PeakID (cmd=annotatePeaks.pl merged_SE_SSE2_MS9.bed mm10 -size given -wig ./mouse_H3K27ac_DM260TN_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig ./mouse_H3K27ac_HZ490LymphE_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig ./mouse_H3K27ac_HZ490LypmD_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig ./mouse_H3K27ac_JT1232_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig ./mouse_H3K27ac_JT1458_NewLib_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig ./mouse_H3K27ac_JT1458_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig ./mouse_H3K27ac_JT1571_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig ./mouse_H3K27ac_KBc8513_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig ./mouse_H3K27ac_KL6663T_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig ./mouse_H3K27ac_KL6668T_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig ./mouse_H3K27ac_KL6835T_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig ./mouse_H3K27ac_KL6948T_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig ./mouse_H3K27ac_KN2147T3_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig ./mouse_H3K27ac_KN2182N_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig ./mouse_H3K27ac_KN2261N_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig ./mouse_H3K27ac_KR131_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig ./mouse_H3K27ac_KRc1959_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig ./mouse_H3K27ac_LX4143TN_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig ./mouse_H3K27ac_RB1458_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig ./mouse_H3K27ac_RB1459_NewLib_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig ./mouse_H3K27ac_RB1459_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig ./mouse_H3K27ac_RB1461_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig ./mouse_H3K27ac_RB1462_NewLib_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig ./mouse_H3K27ac_RB1462_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig ./mouse_H3K27ac_TDc77_223_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig)	Chr	Start	End	Strand	Peak Score	Focus Ratio/Region Size	Annotation	Detailed Annotation	Distance to TSS	Nearest PromoterID	Entrez ID	Nearest Unigene	Nearest Refseq	Nearest Ensembl	Gene Name	Gene Alias	Gene Description	Gene Type	./mouse_H3K27ac_DM260TN_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./mouse_H3K27ac_HZ490LymphE_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./mouse_H3K27ac_HZ490LypmD_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./mouse_H3K27ac_JT1232_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./mouse_H3K27ac_JT1458_NewLib_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./mouse_H3K27ac_JT1458_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./mouse_H3K27ac_JT1571_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./mouse_H3K27ac_KBc8513_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./mouse_H3K27ac_KL6663T_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./mouse_H3K27ac_KL6668T_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./mouse_H3K27ac_KL6835T_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./mouse_H3K27ac_KL6948T_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./mouse_H3K27ac_KN2147T3_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./mouse_H3K27ac_KN2182N_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./mouse_H3K27ac_KN2261N_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./mouse_H3K27ac_KR131_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./mouse_H3K27ac_KRc1959_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./mouse_H3K27ac_LX4143TN_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./mouse_H3K27ac_RB1458_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./mouse_H3K27ac_RB1459_NewLib_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./mouse_H3K27ac_RB1459_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./mouse_H3K27ac_RB1461_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./mouse_H3K27ac_RB1462_NewLib_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./mouse_H3K27ac_RB1462_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp	./mouse_H3K27ac_TDc77_223_treat_rep1_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp
6712	chr17	48110056	48114425	+	0	NA	Intergenic	Intergenic	-21862	NR_110485	320638	Mm.404482	NR_110485		A730006G06Rik	-	RIKEN cDNA A730006G06 gene	ncRNA	3.945	1.629	0.825	4.731	2.651	1.733	10.772	5.887	3.667	6.874	2.325	2.614	5.830	6.972	7.476	10.025	6.999	5.998	4.699	4.071	3.892	7.445	4.038	4.007	11.137
13666	chr7	123340451	123346866	+	0	NA	intron (NM_001122641, intron 1 of 18)	MTE2a|LTR|ERVL-MaLR	26257	NM_001122643	70497	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	2.071	0.893	0.413	1.768	1.905	0.900	2.769	7.024	2.622	2.203	5.715	3.895	2.216	3.016	nan	2.994	2.074	2.706	2.188	0.980	0.754	1.366	1.442	1.361	2.755
8563	chr2	118586046	118592262	+	0	NA	Intergenic	Intergenic	-9057	NM_009773	12236	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	8.500	1.693	0.493	8.062	2.261	0.994	7.263	8.330	4.484	6.459	6.680	3.527	nan	5.920	7.042	8.114	4.709	10.399	2.294	1.103	0.970	2.908	1.244	0.841	11.474
8434	chr2	90948101	90951186	+	0	NA	intron (NM_001244903, intron 1 of 13)	intron (NM_001244903, intron 1 of 13)	9246	NM_017368	13046	Mm.29495	NM_017368	ENSMUSG00000005506	Celf1	1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|Cugbp1|D2Wsu101e|HNAB50|NAB50	CUGBP, Elav-like family member 1	protein-coding	6.661	1.342	0.756	3.545	2.505	1.388	7.274	6.961	5.024	7.488	1.020	0.840	8.058	10.033	5.781	9.994	8.562	6.043	0.861	0.923	0.853	0.606	0.481	0.432	9.533
5006	chr15	3358270	3359629	+	0	NA	intron (NM_001048178, intron 3 of 8)	B1_Mur1|SINE|Alu	-55423	NM_001166063	100039139	Mm.455610	NM_001166063	ENSMUSG00000091119	Ccdc152	ENSMUSG00000071814	coiled-coil domain containing 152	protein-coding	4.841	0.501	0.384	3.297	2.986	2.802	1.678	4.433	4.513	4.760	1.103	1.040	6.270	3.641	2.091	2.584	3.594	4.521	1.132	0.802	1.700	0.553	1.051	1.452	0.493
10309	chr4	99882451	99885660	+	0	NA	intron (NM_145549, intron 4 of 11)	Lx2|LINE|L1	-45396	NM_028132	72157	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	0.820	nan	0.607	0.630	0.920	0.345	0.850	1.326	nan	nan	0.597	0.379	0.770	1.245	nan	0.845	0.642	0.833	1.502	8.169	5.444	nan	1.633	1.275	1.522
3509	chr12	81191130	81193032	+	0	NA	Intergenic	Intergenic	25930	NR_037227	100526532		NR_037227	ENSMUSG00000092673	Mir3067	mir-3067|mmu-mir-3067	microRNA 3067	ncRNA	7.185	4.617	1.651	6.142	2.886	0.869	6.510	3.805	2.741	3.365	1.857	1.031	4.502	4.669	5.226	5.710	3.613	5.141	1.091	1.020	0.740	1.536	0.884	0.555	6.185
10122	chr4	58565402	58566593	+	0	NA	Intergenic	Intergenic	-12506	NM_010336	14745	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	3.214	2.590	1.220	4.105	0.810	0.717	nan	4.953	3.486	6.106	2.259	5.658	3.266	3.610	2.541	1.395	0.717	2.526	nan	0.673	0.903	1.966	0.922	0.691	2.019
14308	chr8	73168795	73174997	+	0	NA	intron (NM_001317391, intron 3 of 15)	intron (NM_001317391, intron 3 of 15)	155384	NR_039551	100628574		NR_039551	ENSMUSG00000093140	Mir28b	mmu-mir-28b	microRNA 28b	ncRNA	5.438	2.702	1.160	4.067	1.699	1.048	nan	6.041	nan	2.711	3.944	2.183	2.795	3.803	3.170	6.360	3.196	5.250	3.381	2.271	1.782	nan	1.272	0.898	8.207
7652	chr19	24262138	24263796	+	0	NA	intron (NM_008044, intron 4 of 4)	intron (NM_008044, intron 4 of 4)	17619	NM_008044	14297	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	2.804	0.596	0.626	nan	5.041	4.597	2.439	3.822	2.080	2.072	nan	0.880	2.571	4.232	2.331	3.492	2.992	3.441	nan	1.009	1.168	1.359	nan	1.328	2.795
4863	chr14	76903200	76906818	+	0	NA	Intergenic	Intergenic	131608	NM_172488	210808	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase (multicopper oxidoreductase) domain containing 1	protein-coding	9.524	2.705	0.634	10.565	4.201	1.685	11.609	14.192	9.619	13.205	8.683	6.082	12.712	13.710	15.056	15.411	7.482	14.513	8.975	2.527	2.096	7.639	4.468	3.793	15.046
11953	chr5	147136156	147138465	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-51386	NM_008178	14842	Mm.4797	NM_008178	ENSMUSG00000053129	Gsx1	Gsh-1|Gsh1	GS homeobox 1	protein-coding	4.737	2.065	1.091	5.695	2.135	1.310	2.204	3.244	4.400	5.382	1.256	0.793	5.143	5.145	4.566	nan	2.735	5.278	1.764	1.349	1.017	1.271	1.452	1.004	6.072
4628	chr14	46166825	46172313	+	0	NA	Intergenic	Lx9|LINE|L1	85542	NR_002875	218963	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo	2.905	0.597	0.627	1.916	1.412	1.033	2.780	3.617	1.838	2.703	0.691	0.918	3.682	3.440	2.609	3.484	2.279	2.360	1.907	1.087	1.028	1.876	1.173	0.955	2.982
12663	chr6	120135790	120143313	+	0	NA	intron (NM_016718, intron 1 of 3)	B1F|SINE|Alu	46171	NM_016718	29862	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	5.371	4.818	1.789	5.535	2.552	1.319	3.521	8.346	3.953	4.856	3.937	1.909	5.188	9.004	5.927	7.744	5.691	6.552	1.282	1.052	1.076	1.827	nan	1.141	5.063
13279	chr7	73736480	73739589	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-2273	NM_001162532	100038347	Mm.425464	NM_001162532	ENSMUSG00000078670	Fam174b	-	family with sequence similarity 174, member B	protein-coding	2.474	0.352	0.245	nan	1.229	0.880	4.444	7.246	3.679	2.148	5.627	5.510	7.012	4.752	3.086	nan	2.691	2.919	0.780	0.580	0.354	0.450	0.575	0.757	nan
1387	chr10	67700395	67704897	+	0	NA	Intergenic	Intergenic	-153691	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	11.931	9.287	6.400	5.842	8.294	5.098	6.506	6.634	6.420	6.238	7.253	4.913	8.868	12.034	6.482	6.369	8.292	6.966	2.423	3.733	2.663	1.914	2.389	1.498	6.777
1932	chr11	5417945	5425018	+	0	NA	intron (NM_001080924, intron 1 of 8)	B3A|SINE|B2	23366	NM_001080924	407821	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	8.279	7.838	3.132	7.347	4.588	3.103	5.686	8.071	4.902	7.266	4.313	2.704	5.347	7.490	6.981	7.263	5.545	6.630	4.958	nan	3.151	6.068	4.250	3.814	8.011
12798	chr6	135734828	135736512	+	0	NA	intron (NM_008171, intron 14 of 14)	AT_rich|Low_complexity|Low_complexity	76757	NR_126088	75024	Mm.399147	NR_126088	ENSMUSG00000107396	4930425L21Rik	4930473P14Rik	RIKEN cDNA 4930425L21 gene	ncRNA	5.183	0.211	0.078	2.508	2.002	0.897	4.662	3.902	4.305	4.868	0.721	0.574	9.106	4.575	6.322	5.716	5.533	8.236	nan	0.713	0.655	0.701	0.616	0.338	5.322
15108	chr9	56852977	56854627	+	0	NA	Intergenic	Intergenic	-1839	NM_198673	382075	Mm.335177	NM_198673	ENSMUSG00000045620	Odf3l1	BC049697|Gm1116	outer dense fiber of sperm tails 3-like 1	protein-coding	3.500	0.628	0.859	2.173	1.819	1.493	2.641	4.603	2.605	2.551	1.181	1.271	2.858	3.721	2.144	3.493	3.590	2.410	0.961	0.641	0.532	0.729	0.683	1.176	2.769
2634	chr11	90537456	90543374	+	0	NA	intron (NM_011505, intron 13 of 17)	intron (NM_011505, intron 13 of 17)	97693	NM_011505	20913	Mm.207203	NM_011505	ENSMUSG00000020546	Stxbp4	6030470M02Rik|Synip	syntaxin binding protein 4	protein-coding	nan	0.442	0.579	nan	3.496	1.958	2.453	3.369	5.337	5.987	1.656	2.009	3.392	3.962	3.458	4.532	3.739	4.839	0.562	0.971	0.932	nan	0.875	0.711	nan
1785	chr10	118443802	118452437	+	0	NA	Intergenic	Lx3C|LINE|L1	7073	NM_008337	15978	Mm.240327	NM_008337	ENSMUSG00000055170	Ifng	IFN-g|Ifg	interferon gamma	protein-coding	3.546	0.830	0.471	2.149	1.687	0.961	2.641	2.818	2.241	2.842	1.204	1.632	2.958	4.001	3.738	3.462	2.467	nan	5.139	5.230	3.630	6.300	4.980	3.348	3.997
8419	chr2	85349408	85352834	+	0	NA	Intergenic	Intergenic	2803	NM_001011534	258166	Mm.389313	NM_001011534	ENSMUSG00000075222	Olfr988	MOR203-5P	olfactory receptor 988	protein-coding	0.611	0.526	0.384	0.537	0.168	0.072	0.349	1.030	0.634	0.513	6.788	2.258	0.961	0.560	0.969	1.233	1.485	0.898	0.479	0.487	0.277	0.291	0.380	0.168	0.471
1250	chr10	41964990	41974889	+	0	NA	intron (NM_001034858, intron 8 of 17)	intron (NM_001034858, intron 8 of 17)	48443	NM_001034858	213402	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	6.114	1.133	0.593	5.469	5.030	2.715	2.486	5.916	3.378	4.209	2.789	1.158	3.748	6.215	3.108	3.936	4.873	5.938	1.077	1.124	0.725	1.395	1.688	0.991	4.628
9363	chr3	65674866	65679370	+	0	NA	intron (NM_001166659, intron 2 of 12)	intron (NM_001166659, intron 2 of 12)	10890	NM_001166659	624866	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	3.032	1.524	0.829	1.439	1.418	0.880	2.646	3.807	2.564	2.245	5.341	3.355	3.274	6.028	1.673	nan	0.969	2.649	1.201	1.257	0.748	1.808	1.232	1.169	5.046
9333	chr3	58315943	58317871	+	0	NA	Intergenic	Intergenic	-97813	NM_001347233	72033	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	2.794	1.670	1.304	nan	3.934	2.731	3.542	0.852	1.897	1.295	0.842	0.637	2.918	4.737	nan	nan	1.705	2.548	0.576	0.989	0.678	0.269	0.799	0.871	1.857
6642	chr17	44827458	44828858	+	0	NA	intron (NM_178652, intron 2 of 11)	L1M3|LINE|L1	-13361	NR_073392	12393	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	3.804	1.586	1.566	1.786	2.793	2.207	4.946	2.675	1.967	2.697	4.169	3.974	2.458	4.220	4.042	3.580	2.483	2.265	0.844	1.903	0.864	2.237	0.623	0.380	2.114
15172	chr9	62673087	62676545	+	0	NA	Intergenic	RMER1A|Other|Other	-3039	NM_176922	319480	Mm.34883	NM_176922	ENSMUSG00000032243	Itga11	4732459H24Rik	integrin alpha 11	protein-coding	6.804	1.312	1.274	3.103	3.149	2.157	8.330	6.605	2.722	3.708	2.102	2.235	6.276	7.718	5.566	6.886	5.541	4.153	4.462	3.025	2.868	4.022	5.203	4.910	6.350
5810	chr16	13446951	13448502	+	0	NA	Intergenic	(CCCA)n|Simple_repeat|Simple_repeat	-1797	NR_030549	100124432		NR_030549	ENSMUSG00000076972	Mir193b	Mir193|Mirn193b|mir-193b	microRNA 193b	ncRNA	4.149	1.719	0.437	3.177	2.327	1.209	4.241	4.523	1.595	5.680	1.500	1.571	3.219	4.789	4.491	6.206	1.340	3.929	2.120	1.658	2.170	4.176	1.166	1.991	7.631
4893	chr14	79691334	79701878	+	0	NA	Intergenic	L1_Mus2|LINE|L1	-6314	NR_045060	73989	Mm.107775	NR_045060		4930452G13Rik	-	RIKEN cDNA 4930452G13 gene	ncRNA	5.854	2.957	1.355	6.172	5.870	3.143	3.983	5.944	4.699	7.897	1.633	0.734	6.013	10.724	6.996	6.095	3.165	7.952	0.719	0.990	0.786	0.904	0.771	0.549	7.051
14392	chr8	85663866	85666201	+	0	NA	intron (NM_001081324, intron 4 of 8)	intron (NM_001081324, intron 4 of 8)	25976	NM_001081324	74513	Mm.126079	NM_001081324	ENSMUSG00000036902	Neto2	5530601C23Rik|AI854825|BTCL2	neuropilin (NRP) and tolloid (TLL)-like 2	protein-coding	7.149	5.881	2.753	2.721	2.073	0.369	1.122	3.488	nan	2.712	1.237	0.730	3.123	3.322	1.959	3.017	2.111	2.804	nan	1.448	0.681	0.972	0.600	0.251	2.944
3957	chr13	34434101	34437010	+	0	NA	Intergenic	Intergenic	-90373	NM_001033167	73102	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	6.130	nan	0.404	7.178	2.487	1.545	8.074	8.091	4.759	11.965	3.854	2.715	6.875	9.846	9.152	9.685	4.811	9.498	2.947	1.648	1.916	4.647	3.219	3.094	15.048
8409	chr2	84486377	84491524	+	0	NA	Intergenic	Intergenic	-12175	NM_001177320	21788	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	11.743	0.972	0.935	7.025	8.172	4.322	9.798	10.837	7.614	8.131	9.293	5.624	9.246	11.249	6.995	8.024	11.994	9.257	4.267	4.399	3.180	3.218	5.269	3.564	7.249
3497	chr12	80959083	80962566	+	0	NA	intron (NM_011387, intron 1 of 3)	intron (NM_011387, intron 1 of 3)	7255	NM_011387	20493	Mm.486361	NM_011387	ENSMUSG00000021135	Slc10a1	Ntcp	solute carrier family 10 (sodium/bile acid cotransporter family), member 1	protein-coding	8.474	1.893	1.032	3.744	2.243	1.343	7.524	4.560	4.072	5.266	1.563	0.964	9.102	9.359	7.110	8.665	6.473	6.333	1.817	1.177	0.894	1.618	0.770	0.791	14.622
6531	chr17	31793047	31797795	+	0	NA	Intergenic	Intergenic	60371	NM_010831	17691	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Msk|Sik|Snf1lk	salt inducible kinase 1	protein-coding	4.852	7.552	3.023	5.620	3.886	4.154	5.242	4.118	3.806	5.504	3.221	2.274	3.898	4.865	5.412	7.031	4.438	5.108	5.131	2.785	4.113	6.224	3.956	5.549	6.934
12093	chr6	28429253	28434430	+	0	NA	intron (NM_019569, intron 3 of 6)	intron (NM_019569, intron 3 of 6)	3940	NM_019569	56223	Mm.31708	NM_019569	ENSMUSG00000029707	Fscn3	-	fascin actin-bundling protein 3	protein-coding	5.172	4.989	2.467	4.364	3.973	2.001	5.063	5.864	3.290	4.087	2.809	1.768	5.358	7.031	6.053	8.145	5.558	4.329	nan	2.173	1.553	1.924	1.555	1.368	5.563
10441	chr4	118904705	118906433	+	0	NA	Intergenic	RMER16-int|LTR|ERVK	11896	NM_001011870	258214	Mm.454498	NM_001011870	ENSMUSG00000096705	Olfr1329	MOR259-2	olfactory receptor 1329	protein-coding	6.382	6.742	2.077	6.639	2.905	2.106	4.083	5.599	2.463	7.661	3.074	2.028	3.803	5.741	6.291	7.815	3.111	6.016	3.063	1.724	2.316	3.409	2.689	2.835	12.548
14816	chr8	129256984	129268067	+	0	NA	Intergenic	Intergenic	-1105	NM_001346808	102635552		NM_001346808		Gm32856	-	predicted gene, 32856	protein-coding	9.137	nan	1.082	7.590	5.645	2.929	6.422	10.849	6.904	8.935	4.554	3.140	10.188	11.405	9.414	11.303	7.785	9.703	nan	1.868	1.202	nan	2.228	nan	10.243
11169	chr5	35917243	35918358	+	0	NA	intron (NM_027373, intron 1 of 16)	MTD|LTR|ERVL-MaLR	24481	NM_027373	70292	Mm.125167	NM_027373	ENSMUSG00000029094	Afap1	2600003E23Rik|9630044L16Rik|AI848729|Afap|mKIAA3018	actin filament associated protein 1	protein-coding	7.141	8.965	1.960	8.423	2.652	1.215	4.656	5.467	4.421	5.606	5.568	3.381	5.746	5.240	8.472	8.230	3.868	9.536	4.493	1.425	1.663	6.499	1.692	1.184	9.902
9638	chr3	104304283	104306038	+	0	NA	Intergenic	RSINE1|SINE|B4	-84754	NM_001159354	99470	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding	3.496	2.876	1.785	1.299	2.163	1.467	3.844	4.343	2.550	1.891	3.949	1.309	4.021	4.731	3.846	2.988	1.972	3.035	0.816	0.906	0.948	0.947	0.872	0.881	2.548
7022	chr18	11558283	11559470	+	0	NA	Intergenic	Lx|LINE|L1	-74400	NM_001252495	225182	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8	protein-coding	4.700	0.623	0.170	2.136	1.549	1.280	5.168	1.027	2.240	2.809	0.409	0.253	4.156	4.687	5.084	4.000	2.616	5.827	0.436	0.691	0.103	0.493	0.457	0.241	5.077
3919	chr13	30283464	30289873	+	0	NA	Intergenic	Intergenic	-49688	NM_177322	11607	Mm.35062	NM_177322	ENSMUSG00000049115	Agtr1a	1810074K20Rik|AG2S|AI551199|AT1|AT1a|AT2R1|AT2R1A|Agtr-1a|Agtr1|Angtr-1a	angiotensin II receptor, type 1a	protein-coding	2.445	1.037	0.845	1.239	1.908	1.393	3.355	3.250	2.607	1.985	5.487	5.694	2.041	3.779	2.671	1.977	1.655	2.209	1.297	1.355	1.062	0.948	1.504	0.879	1.426
728	chr1	152010163	152019244	+	0	NA	intron (NM_197990, intron 1 of 5)	intron (NM_197990, intron 1 of 5)	75617	NM_197990	69399	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik|ENSMUSG00000073540	RIKEN cDNA 1700025G04 gene	protein-coding	nan	0.672	0.551	2.051	4.935	3.691	3.474	3.517	2.949	3.122	3.544	1.374	4.821	5.762	3.626	5.879	3.417	4.727	0.457	0.453	0.446	0.250	0.456	0.335	1.932
1244	chr10	41801832	41813573	+	0	NA	intron (NM_026643, intron 1 of 10)	intron (NM_026643, intron 1 of 10)	1961	NM_001243075	103268	Mm.338605	NM_026643	ENSMUSG00000019813	Cep57l1	2410017P07Rik|4930484D11Rik|AI607327|cep57R	centrosomal protein 57-like 1	protein-coding	5.565	1.200	0.623	4.731	4.039	2.416	2.442	4.198	5.182	6.319	3.534	1.769	4.455	6.782	3.779	4.941	3.377	5.906	1.313	1.028	0.710	2.396	1.503	1.361	5.930
11083	chr5	28362612	28365240	+	0	NA	intron (NM_028234, intron 9 of 18)	intron (NM_028234, intron 9 of 18)	46737	NM_028234	381626	Mm.304075	NM_028234	ENSMUSG00000048271	Rbm33	3200001K10Rik|6430512A10Rik|AA386890|Prr8	RNA binding motif protein 33	protein-coding	5.345	1.366	0.670	4.813	4.456	2.444	6.028	6.094	4.962	5.338	0.690	2.224	5.681	7.576	8.683	8.261	5.717	6.084	2.291	1.425	0.933	1.990	2.194	1.506	6.569
1638	chr10	94762675	94770992	+	0	NA	intron (NM_029852, intron 11 of 15)	intron (NM_029852, intron 11 of 15)	78043	NM_029852	77048	Mm.296971	NM_029852	ENSMUSG00000020024	Cep83	2600001G24Rik|4921537D05Rik|5730513H21Rik|Ccdc41	centrosomal protein 83	protein-coding	7.415	1.256	0.817	5.619	4.476	2.987	5.179	2.301	4.997	5.529	5.127	4.875	4.638	6.466	5.890	5.910	5.455	7.350	nan	1.883	1.224	nan	2.156	1.587	8.713
29	chr1	15795179	15796774	+	0	NA	Intergenic	Intergenic	-9670	NM_009352	21749	Mm.4306	NM_009352	ENSMUSG00000025925	Terf1	Pin2|Trbf1|Trf1	telomeric repeat binding factor 1	protein-coding	9.213	13.547	5.493	10.957	2.678	2.291	5.885	5.706	5.411	9.899	7.052	3.726	7.520	7.316	8.300	13.184	6.661	9.183	5.731	2.885	3.078	7.759	3.226	3.856	13.086
7816	chr19	45866994	45871868	+	0	NA	intron (NM_198296, intron 23 of 25)	intron (NM_198296, intron 23 of 25)	-53368	NM_145703	80906	Mm.213204	NM_030716	ENSMUSG00000025221	Kcnip2	KChIP2	Kv channel-interacting protein 2	protein-coding	1.260	2.092	0.757	nan	1.580	0.831	4.833	5.840	1.386	1.682	1.011	0.715	1.759	3.771	2.805	3.458	3.326	nan	0.392	0.530	0.478	0.615	1.215	0.574	2.464
5831	chr16	17011029	17013864	+	0	NA	intron (NM_011949, intron 1 of 8)	B1_Mur2|SINE|Alu	29064	NM_001038663	26413	Mm.196581	NM_011949	ENSMUSG00000063358	Mapk1	9030612K14Rik|AA407128|AU018647|C78273|ERK|Erk2|MAPK2|PRKM2|Prkm1|p41mapk|p42mapk	mitogen-activated protein kinase 1	protein-coding	6.599	1.433	2.032	3.665	7.110	5.370	2.623	3.472	4.892	4.336	1.856	2.772	5.692	5.118	3.672	4.700	5.026	5.559	1.344	1.404	0.817	0.562	1.205	0.983	3.992
10805	chr4	140542178	140546562	+	0	NA	exon (NM_172415, exon 23 of 28)	exon (NM_172415, exon 23 of 28)	104386	NM_001112723	72754	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	4.432	4.581	2.073	5.179	2.203	1.485	1.808	1.899	nan	3.921	2.209	1.191	1.451	3.253	2.817	3.073	1.499	3.403	3.986	3.136	2.986	5.637	nan	4.300	4.874
4087	chr13	47263500	47265847	+	0	NA	Intergenic	Intergenic	70670	NM_001170643	218215	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	nan	0.604	0.546	nan	0.928	0.529	0.937	1.447	0.730	0.708	5.809	2.128	0.391	0.515	0.947	1.092	0.846	nan	0.550	nan	0.209	0.502	0.515	0.134	nan
1969	chr11	8866899	8868985	+	0	NA	Intergenic	Intergenic	143249	NM_001303610	15574	Mm.42201	NM_008316	ENSMUSG00000020413	Hus1	-	HUS1 checkpoint clamp component	protein-coding	nan	0.380	0.353	0.136	0.275	0.175	0.313	0.161	0.344	0.313	0.226	0.110	0.107	0.275	0.080	0.252	0.246	0.215	3.323	3.612	2.184	1.903	8.616	5.928	0.131
11879	chr5	139896683	139907201	+	0	NA	Intergenic	B4|SINE|B4	-6001	NM_175522	243312	Mm.237102	NM_175522	ENSMUSG00000048988	Elfn1	A930017N06Rik|AI197272|Ppp1r28	leucine rich repeat and fibronectin type III, extracellular 1	protein-coding	0.915	0.845	0.392	1.723	0.589	0.243	0.673	0.601	1.015	1.126	0.430	0.634	0.732	0.589	1.379	1.546	0.894	1.806	3.936	2.232	2.546	6.879	nan	1.460	1.308
2203	chr11	53875730	53879940	+	0	NA	intron (NM_011396, intron 2 of 9)	intron (NM_011396, intron 2 of 9)	13868	NM_011396	20520	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	2.065	2.039	0.604	2.177	1.721	1.066	2.659	2.338	2.176	2.370	2.082	1.556	2.511	3.946	2.447	2.697	1.469	2.383	nan	2.238	1.605	4.504	1.069	0.695	nan
6358	chr17	15788066	15790072	+	0	NA	Intergenic	Intergenic	37517	NM_178615	68799	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	2.429	0.697	0.645	0.706	1.486	0.743	2.306	2.205	1.261	1.261	4.997	2.037	0.532	0.833	1.605	1.616	1.910	1.669	0.524	0.670	0.237	0.336	0.772	0.725	1.816
4358	chr13	103635587	103641797	+	0	NA	intron (NR_136924, intron 1 of 3)	RMER1B|Other|Other	68941	NR_136924	102632492	Mm.383874	NR_136924		Gm30551	Gm30710	predicted gene, 30551	ncRNA	nan	nan	0.908	2.477	2.769	1.466	1.354	2.366	nan	nan	5.964	4.155	2.045	2.045	1.722	2.646	2.135	2.494	2.838	1.531	1.295	nan	2.683	1.997	1.815
14729	chr8	125068995	125076129	+	0	NA	intron (NM_174853, intron 1 of 11)	intron (NM_174853, intron 1 of 11)	18367	NM_174854	244667	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	6.824	12.440	3.760	nan	5.258	3.286	3.879	8.590	4.389	8.249	4.123	2.330	5.981	9.196	8.125	9.743	6.057	8.632	nan	1.691	2.087	nan	1.171	nan	13.230
10701	chr4	135049211	135051662	+	0	NA	Intergenic	L1MEc|LINE|L1	-70209	NM_019732	12399	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	6.201	7.117	2.769	6.728	3.925	2.424	5.967	7.539	4.447	5.165	3.398	2.491	5.031	7.735	5.490	7.838	5.642	5.685	7.991	5.856	4.212	7.677	nan	7.311	6.655
15101	chr9	56613997	56616207	+	0	NA	Intergenic	Intergenic	20546	NM_001311076	235402	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	4.693	0.486	0.205	3.780	0.645	0.359	2.951	nan	3.088	6.023	0.457	0.562	5.528	6.555	5.456	7.636	2.965	6.091	1.420	0.431	0.320	0.902	0.576	0.518	12.188
15021	chr9	44387370	44389554	+	0	NA	intron (NM_021395, intron 19 of 25)	intron (NM_021395, intron 19 of 25)	-8465	NM_001293631	14385	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	100043178|G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding	4.588	6.029	5.067	3.046	2.112	1.821	1.868	2.654	3.266	2.748	1.303	0.941	3.247	3.252	4.356	4.399	3.539	2.761	1.400	2.228	1.954	nan	2.823	2.663	2.818
2994	chr11	115990712	115993738	+	0	NA	intron (NM_001005608, intron 23 of 39)	intron (NM_001005608, intron 23 of 39)	17500	NM_133663	192897	Mm.213873	NM_133663	ENSMUSG00000020758	Itgb4	AA407042|C230078O20|CD104	integrin beta 4	protein-coding	6.500	12.068	3.253	10.918	5.467	4.635	4.935	5.865	5.833	8.897	6.501	3.765	5.494	7.081	8.011	8.431	4.345	7.955	4.146	nan	3.853	5.247	2.851	4.036	9.745
6587	chr17	35299820	35303155	+	0	NA	Intergenic	Intergenic	-19071	NM_010390	15006	Mm.466882	NM_010390	ENSMUSG00000079507	H2-Q1	H-2Q1|Q1|Q1b|Q1d|Q1k|Qa-1|Qa1|Qed-1	histocompatibility 2, Q region locus 1	protein-coding	10.945	10.955	4.258	8.094	6.925	4.296	11.210	8.528	5.833	10.665	7.323	4.550	6.797	11.976	10.346	11.958	9.564	8.475	6.027	6.406	3.300	5.987	6.924	4.909	12.733
4003	chr13	38636387	38638487	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-2328	NM_139063	17828	Mm.261554	NM_139063	ENSMUSG00000038982	Bloc1s5	1810074A19Rik|Muted|mu	biogenesis of lysosomal organelles complex-1, subunit 5, muted	protein-coding	2.319	10.483	5.573	2.063	1.362	0.450	2.024	2.401	2.889	3.371	1.722	0.419	3.073	6.097	3.148	3.836	2.087	3.835	0.841	0.847	0.366	0.816	0.440	0.345	3.306
11648	chr5	120715006	120717073	+	0	NA	Intergenic	RSINE1|SINE|B4	-4370	NM_008052	14357	Mm.1645	NM_008052	ENSMUSG00000029603	Dtx1	Fxit1|mKIAA4160	deltex 1, E3 ubiquitin ligase	protein-coding	0.445	0.502	0.391	0.261	0.185	0.178	0.226	0.105	0.148	0.136	0.264	0.248	0.133	0.163	0.239	0.657	0.359	0.278	6.033	nan	1.287	0.731	4.503	5.248	0.483
10233	chr4	86027298	86035118	+	0	NA	Intergenic	Intergenic	-22707	NM_029967	77739	Mm.331690	NM_029967	ENSMUSG00000066113	Adamtsl1	5930437A14Rik|6720426B09Rik|ADAMTSL-1	ADAMTS-like 1	protein-coding	0.592	nan	0.168	0.631	0.280	0.062	0.306	nan	nan	0.497	0.411	0.257	0.247	0.351	0.479	0.763	0.360	nan	1.699	nan	0.657	13.137	1.014	0.668	nan
4836	chr14	73661686	73663321	+	0	NA	Intergenic	L1Md_F3|LINE|L1	109717	NM_011506	20916	Mm.38951	NM_011506	ENSMUSG00000022110	Sucla2	4930547K18Rik|A-SCS	succinate-Coenzyme A ligase, ADP-forming, beta subunit	protein-coding	4.044	0.673	0.715	2.368	4.612	5.459	4.293	6.443	5.182	3.491	3.184	3.790	4.438	4.317	3.472	4.090	4.246	4.932	1.118	0.594	1.307	0.601	0.956	1.119	2.174
12147	chr6	34547506	34550894	+	0	NA	Intergenic	Intergenic	-49304	NM_001347100	109624	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	5.631	1.509	0.731	3.869	1.435	0.823	5.583	2.119	1.892	2.370	2.096	0.781	6.080	4.038	5.387	3.867	2.636	3.943	nan	1.036	0.458	nan	nan	0.429	3.057
13334	chr7	82797550	82802099	+	0	NA	Intergenic	Intergenic	-44180	NR_046004	77800	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	6.361	6.242	3.381	6.070	7.776	4.586	2.462	5.184	5.295	5.510	3.264	3.208	4.802	5.915	4.093	4.188	4.429	5.854	4.361	5.911	2.344	3.502	5.279	2.976	3.108
3844	chr13	12552383	12554673	+	0	NA	Intergenic	RLTR11A2|LTR|ERVK	-12355	NM_026184	67475	Mm.358706	NM_026184	ENSMUSG00000057069	Ero1lb	1300013B24Rik|1700065B09Rik|AI447560|Ero1b|ero1-beta	ERO1-like beta (S. cerevisiae)	protein-coding	8.862	10.140	2.640	7.845	3.793	1.641	5.735	6.090	5.722	7.148	6.703	2.892	6.450	8.025	8.246	9.528	4.717	8.017	4.291	2.432	1.631	4.584	3.171	2.430	11.114
12242	chr6	52538080	52539653	+	0	NA	Intergenic	RLTR24|LTR|ERV1	46415	NR_046049	74304	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	5.106	0.616	0.412	1.715	2.924	1.012	7.309	4.207	2.918	4.063	0.755	0.803	3.805	5.315	4.260	6.754	4.266	4.209	nan	0.290	0.533	0.618	0.580	0.185	4.996
14610	chr8	113759949	113764628	+	0	NA	intron (NM_172466, intron 10 of 22)	intron (NM_172466, intron 10 of 22)	-85830	NR_136914	102631810	Mm.412563	NR_136914	ENSMUSG00000110582	Gm30052	-	predicted gene, 30052	ncRNA	5.006	1.070	1.184	2.337	5.433	4.397	4.495	4.558	2.955	2.810	1.552	2.210	5.387	4.268	4.570	nan	4.824	3.893	1.249	1.107	1.538	1.262	1.453	1.439	3.661
11427	chr5	91631537	91638175	+	0	NA	Intergenic	L1Md_A|LINE|L1	117156	NM_145562	231440	Mm.5002	NM_145562	ENSMUSG00000034981	Parm1	2210012L08Rik|9130213B05Rik|W91666	prostate androgen-regulated mucin-like protein 1	protein-coding	3.968	0.454	0.462	3.389	4.665	2.216	3.517	3.172	6.061	6.941	2.447	2.544	4.295	4.629	6.776	5.696	3.329	8.062	0.546	0.422	0.255	0.475	0.279	0.175	3.158
15874	chrX	163542336	163544065	+	0	NA	intron (NM_008177, intron 1 of 2)	L1_Mus1|LINE|L1	6536	NM_008177	14829	Mm.4687	NM_008177	ENSMUSG00000031364	Grpr	GRP-R	gastrin releasing peptide receptor	protein-coding	3.257	9.083	5.757	2.588	1.680	1.000	1.692	1.744	2.485	3.167	0.877	0.769	1.931	2.447	2.305	2.531	2.846	2.633	1.433	2.291	1.984	1.123	0.733	0.892	1.876
13766	chr7	134386742	134388656	+	0	NA	Intergenic	Intergenic	-10871	NM_001081331	71007	Mm.334285	NM_001081331	ENSMUSG00000030994	D7Ertd443e	4933400E14Rik|FATS|Gm497	DNA segment, Chr 7, ERATO Doi 443, expressed	protein-coding	8.636	11.231	5.021	8.285	6.456	5.445	9.860	9.978	4.993	10.217	7.029	3.967	7.647	11.511	6.719	8.328	7.006	6.705	4.389	4.202	4.355	4.942	5.538	5.271	12.461
9600	chr3	100903417	100904856	+	0	NA	Intergenic	ID_B1|SINE|B4	-18357	NM_001165952	229644	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding	3.281	0.724	0.847	3.838	1.522	0.758	3.865	2.231	3.094	2.791	nan	0.940	2.520	2.986	2.784	3.559	2.511	4.492	1.144	1.298	1.132	2.245	0.683	0.708	2.920
3889	chr13	24129171	24130753	+	0	NA	intron (NM_001311122, intron 11 of 37)	MERVL-int|LTR|ERVL	-138748	NM_145399	214189	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	3.710	0.676	0.912	1.364	2.816	1.388	2.932	1.109	2.898	3.362	1.530	1.325	2.034	4.386	2.082	2.727	1.940	3.046	1.340	1.597	1.286	0.648	1.793	1.256	2.124
11820	chr5	136889757	136890719	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-7023	NM_001346699	140709	Mm.295020	NM_024474	ENSMUSG00000004415	Col26a1	9430032K24Rik|BC002218|Col26a|Emid2|Emu2	collagen, type XXVI, alpha 1	protein-coding	3.100	0.860	1.209	1.209	3.638	1.437	2.511	2.364	2.290	2.851	1.351	0.785	1.448	3.265	1.519	2.025	1.677	2.614	1.079	1.373	0.509	0.640	nan	0.493	1.572
2086	chr11	35728208	35740749	+	0	NA	Intergenic	Lx8|LINE|L1	-35017	NM_145962	211347	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	6.119	0.539	0.266	4.123	3.553	1.798	6.442	6.942	4.709	5.865	2.543	1.709	6.164	8.274	7.009	7.465	4.984	6.867	1.306	0.876	0.499	1.452	1.371	0.631	6.576
1322	chr10	59104509	59106266	+	0	NA	intron (NM_172788, intron 8 of 9)	intron (NM_172788, intron 8 of 9)	116460	NM_001024911	103080	Mm.346842	NM_001024910	ENSMUSG00000019917	Sept10	4921515A04Rik|9430099J10Rik|AA408298|AI874685	septin 10	protein-coding	5.006	1.135	0.433	1.991	2.561	1.281	2.047	3.039	3.703	3.077	4.093	4.307	4.102	3.791	3.030	2.368	2.735	4.384	nan	0.350	0.100	1.000	1.330	0.774	3.101
15671	chrX	9045581	9048365	+	0	NA	Intergenic	Intergenic	3422	NM_001277184	434728	Mm.291786	NM_001277184		Fthl17-ps1	EG434728|Fthl17L4|Gm14499|OTTMUSG00000016862	ferritin, heavy polypeptide-like 17, pseudogene 1	protein-coding	1.794	5.416	3.686	0.991	0.715	0.560	0.742	0.753	0.910	1.074	0.434	0.506	0.782	0.580	0.846	0.749	1.024	0.946	0.843	0.891	0.792	0.457	0.188	0.206	0.629
7337	chr18	65655673	65657674	+	0	NA	intron (NM_207255, intron 3 of 5)	intron (NM_207255, intron 3 of 5)	-37058	NR_105742	100526497		NR_105742	ENSMUSG00000077113	Mir466p	mmu-mir-466p	microRNA 466p	ncRNA	9.221	0.475	0.748	2.362	5.549	4.517	5.562	11.578	2.676	3.566	1.389	3.017	6.040	5.882	3.123	2.745	3.510	2.406	1.945	1.776	2.329	2.018	2.966	3.128	4.196
10129	chr4	59375054	59376931	+	0	NA	intron (NM_001163288, intron 8 of 16)	intron (NM_001163288, intron 8 of 16)	62641	NM_001163288	634731	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528|OTTMUSG00000007332	sushi domain containing 1	protein-coding	5.178	nan	0.524	3.221	2.676	0.885	nan	6.633	3.393	3.026	1.969	1.944	2.722	3.839	4.786	5.804	2.488	4.743	nan	0.696	0.848	4.074	1.190	0.633	4.068
5804	chr16	11433301	11463795	+	0	NA	intron (NM_001290148, intron 6 of 13)	intron (NM_001290148, intron 6 of 13)	42900	NM_001290148	74478	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|ENSMUSG00000079738|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	6.482	1.952	0.941	5.359	6.144	3.476	nan	6.641	5.200	6.929	2.238	1.455	7.293	10.346	7.688	9.230	5.618	9.346	0.878	0.854	0.638	0.751	0.625	0.555	9.435
15465	chr9	106227656	106231813	+	0	NA	Intergenic	B2_Mm2|SINE|B2	7136	NM_031178	81897	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	5.491	0.966	0.341	5.323	2.989	1.181	4.538	3.305	nan	nan	2.962	0.956	5.573	8.590	4.546	6.523	3.263	7.576	0.890	0.697	0.468	0.827	0.772	0.810	8.843
9968	chr4	32351076	32352865	+	0	NA	Intergenic	MER119|DNA|hAT-Charlie	-65465	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	4.236	2.443	1.947	2.918	2.400	1.479	1.590	0.691	3.056	3.151	0.691	0.532	3.529	3.819	2.704	4.795	1.640	2.639	1.997	0.938	0.716	1.081	0.708	0.528	4.930
2699	chr11	96451925	96460741	+	0	NA	intron (NR_033524, intron 2 of 2)	intron (NR_033524, intron 2 of 2)	8214	NR_033524	100038600	Mm.483549	NR_033524		Gm11529	OTTMUSG00000001775	predicted gene 11529	ncRNA	0.403	nan	0.419	0.501	0.237	0.070	0.234	0.304	0.342	0.312	0.218	0.179	0.202	0.230	0.208	0.484	nan	0.574	3.337	nan	2.432	7.590	nan	nan	0.311
7398	chr18	75612962	75619269	+	0	NA	intron (NM_201354, intron 3 of 11)	intron (NM_201354, intron 3 of 11)	81581	NM_201354	269037	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	5.894	nan	1.926	3.821	3.714	2.074	8.173	8.341	3.637	5.023	2.674	2.853	7.914	9.022	6.176	6.530	5.094	5.246	1.092	nan	1.067	1.050	0.969	0.616	7.346
1259	chr10	42940091	42942255	+	0	NA	intron (NM_172938, intron 6 of 8)	intron (NM_172938, intron 6 of 8)	80661	NM_172938	268297	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	sex comb on midleg-like 4 (Drosophila)	protein-coding	7.710	10.323	2.993	7.310	3.548	1.526	5.234	7.107	5.046	6.529	5.134	3.811	5.588	6.861	7.793	10.018	4.993	8.404	5.713	1.693	1.986	6.553	2.443	2.602	12.740
9961	chr4	19819614	19823366	+	0	NA	intron (NM_028746, intron 1 of 3)	intron (NM_028746, intron 1 of 3)	2763	NM_028746	74087	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	5.497	1.451	0.906	3.722	2.529	1.055	3.093	3.814	4.036	3.741	2.371	1.172	5.471	6.077	3.703	5.158	3.306	5.356	0.765	0.609	0.180	0.528	0.527	0.306	3.672
8694	chr2	132512162	132515097	+	0	NA	intron (NR_028286, intron 2 of 3)	intron (NR_028286, intron 2 of 3)	22901	NR_028286	70371	Mm.394667	NR_028286	ENSMUSG00000086379	1700026D11Rik	-	RIKEN cDNA 1700026D11 gene	ncRNA	6.280	9.703	5.514	5.149	4.294	2.987	3.553	4.566	3.994	4.058	3.106	2.373	3.276	4.240	3.688	4.135	4.466	4.936	nan	2.172	2.132	2.691	2.176	2.203	4.576
14467	chr8	94050271	94054332	+	0	NA	intron (NM_177767, intron 4 of 12)	intron (NM_177767, intron 4 of 12)	15103	NM_001093757	270086	Mm.251085	NM_177767	ENSMUSG00000033009	Ogfod1	4930415J21Rik|AA387199|AA939912|AW061076|mKIAA1612	2-oxoglutarate and iron-dependent oxygenase domain containing 1	protein-coding	0.909	0.724	0.349	0.865	0.757	0.069	0.839	2.412	1.249	1.226	1.053	0.480	1.074	0.937	1.603	2.370	0.926	1.652	2.245	1.917	1.123	5.492	2.051	1.106	1.448
13633	chr7	119965651	119978521	+	0	NA	Intergenic	Intergenic	71975	NR_126475	73919	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	4.417	0.892	0.493	3.705	3.351	2.111	6.297	7.372	4.526	5.711	1.838	1.834	6.638	7.334	7.196	7.167	4.911	6.221	2.973	1.637	1.237	2.935	1.879	1.522	5.160
5464	chr15	81093454	81094959	+	0	NA	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	10841	NM_153049	223701	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	3.590	1.508	0.914	1.448	1.700	1.557	5.345	7.864	1.090	nan	4.436	0.300	3.565	3.408	4.201	2.485	2.777	2.487	2.319	2.672	2.333	4.393	1.085	1.350	2.328
11280	chr5	65836094	65837035	+	0	NA	Intergenic	Intergenic	-27005	NM_001081105	74734	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	1.829	0.834	1.073	1.074	1.277	0.525	2.263	2.705	1.388	1.034	1.986	2.549	1.326	2.747	2.703	1.709	1.342	1.937	1.818	0.638	0.521	nan	1.297	0.517	0.959
9985	chr4	40150670	40153451	+	0	NA	intron (NM_007386, intron 1 of 20)	(CA)n|Simple_repeat|Simple_repeat	8795	NM_007386	11428	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	4.455	0.788	0.666	3.688	3.245	2.113	3.534	4.689	3.686	3.709	0.495	0.503	5.258	7.552	4.560	5.585	4.829	4.405	0.991	0.556	0.711	0.628	0.722	0.754	6.210
5401	chr15	78371456	78375788	+	0	NA	Intergenic	RMER20A|LTR|ERVK	15147	NM_001163613	73376	Mm.73222	NM_028522	ENSMUSG00000062154	Tex33	1700061J05Rik|Ean57	testis expressed 33	protein-coding	3.425	nan	0.478	2.878	1.341	0.823	5.784	10.718	2.898	3.462	nan	1.097	4.186	6.180	5.118	4.129	3.065	5.170	2.651	1.785	1.415	nan	3.650	2.830	3.808
3475	chr12	80080802	80082731	+	0	NA	Intergenic	Intergenic	31247	NM_007564	12192	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	6.348	12.715	7.306	5.784	4.640	3.566	2.973	2.490	3.585	4.072	3.649	2.247	2.031	2.918	2.619	3.461	2.219	3.981	2.983	3.261	2.997	1.875	4.100	4.268	5.868
4319	chr13	99246243	99248795	+	0	NA	TTS (NM_001004149)	TTS (NM_001004149)	62696	NM_001004149	238803	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	3.306	0.440	0.049	1.524	2.381	0.744	1.881	1.582	2.096	2.397	0.893	0.982	3.321	3.203	2.730	1.655	nan	3.834	1.312	0.665	0.514	0.855	1.668	1.325	4.963
8193	chr2	35542868	35554851	+	0	NA	TTS (NR_045894)	TTS (NR_045894)	-9599	NM_001114125	69601	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	6.988	1.645	0.638	6.154	4.245	1.966	6.045	9.301	4.680	5.625	4.099	2.901	7.178	7.858	7.000	8.587	5.437	7.647	2.227	1.143	0.925	2.538	1.028	0.792	10.278
13760	chr7	134119686	134121030	+	0	NA	intron (NM_007400, intron 3 of 22)	intron (NM_007400, intron 3 of 22)	104739	NM_007400	11489	Mm.439714	NM_007400	ENSMUSG00000054555	Adam12	Mltna	a disintegrin and metallopeptidase domain 12 (meltrin alpha)	protein-coding	13.735	18.604	7.340	17.080	7.051	3.408	13.366	14.358	11.105	13.999	9.284	8.331	12.622	14.141	13.540	13.647	11.292	15.412	7.711	4.777	4.291	8.783	4.789	3.436	21.844
6327	chr17	10285724	10290067	+	0	NA	intron (NM_021881, intron 1 of 6)	intron (NM_021881, intron 1 of 6)	31466	NM_021881	19317	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	2.975	1.969	0.490	5.738	1.441	0.395	0.913	1.520	1.981	2.068	0.818	0.231	0.832	1.679	1.544	2.157	nan	3.356	nan	0.938	0.355	2.064	0.459	0.277	1.984
14363	chr8	80005352	80018333	+	0	NA	intron (NM_020259, intron 4 of 12)	intron (NM_020259, intron 4 of 12)	46166	NM_020259	15245	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	4.308	nan	0.759	2.639	3.742	2.286	nan	5.032	nan	2.976	1.419	0.921	5.069	5.709	4.583	nan	4.426	3.778	0.704	0.764	0.701	nan	0.431	0.363	nan
11869	chr5	139624443	139627057	+	0	NA	Intergenic	Intergenic	81852	NM_013702	22255	Mm.42190	NM_013702	ENSMUSG00000029546	Uncx	Chx4|Uncx4.1	UNC homeobox	protein-coding	6.060	4.233	2.026	4.591	3.526	1.168	5.192	4.698	2.969	6.328	3.808	1.815	3.666	7.220	4.808	5.574	4.462	4.381	3.083	2.860	1.554	2.851	nan	3.326	7.198
14479	chr8	96532065	96537160	+	0	NA	Intergenic	Intergenic	11361	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	5.282	6.833	2.381	5.705	3.553	1.715	3.788	7.696	3.347	7.612	3.431	2.361	5.521	5.521	7.415	8.100	5.076	6.929	3.087	1.653	1.697	4.593	2.221	2.224	10.101
12794	chr6	135242704	135246399	+	0	NA	intron (NM_001080553, intron 1 of 5)	intron (NM_001080553, intron 1 of 5)	3333	NM_001080552	14840	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	4.250	0.499	0.316	4.002	4.159	2.170	9.079	6.455	4.903	4.544	3.908	3.743	9.370	8.785	5.996	8.860	7.657	5.911	nan	1.090	0.623	1.107	1.007	0.950	4.692
11798	chr5	136177517	136179748	+	0	NA	Intergenic	Intergenic	-7976	NM_178751	269717	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	5.885	5.984	1.516	6.617	4.838	3.057	4.777	5.075	4.760	5.970	5.585	3.301	3.794	5.204	5.910	6.890	4.440	5.466	1.103	1.390	0.976	0.985	nan	0.953	5.158
6894	chr17	83611350	83620728	+	0	NA	intron (NM_153512, intron 1 of 1)	intron (NM_153512, intron 1 of 1)	15856	NM_153512	225030	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	3.239	2.474	0.821	2.202	0.787	0.538	4.413	3.194	nan	4.677	0.609	0.714	1.778	2.144	3.811	8.027	4.966	3.728	1.429	0.674	0.794	1.439	1.992	2.005	9.101
13020	chr7	26178574	26181629	+	0	NA	intron (NM_010000, intron 1 of 8)	RLTR17|LTR|ERVK	6692	NM_010000	13094	Mm.14413	NM_010000	ENSMUSG00000040660	Cyp2b9	Cyp2b	cytochrome P450, family 2, subfamily b, polypeptide 9	protein-coding	5.948	7.224	2.164	7.398	4.294	1.966	5.831	9.567	4.406	6.332	5.356	2.520	6.328	7.744	7.054	6.746	5.231	6.714	3.560	2.842	1.675	5.131	3.488	2.186	8.048
4902	chr14	79947932	79952653	+	0	NA	Intergenic	L1M5|LINE|L1	-50010	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding	6.771	4.022	4.506	3.850	7.905	5.152	5.108	8.761	4.575	4.503	3.421	2.931	5.191	7.434	4.550	4.046	4.540	4.841	1.202	1.945	1.445	0.914	1.704	1.590	3.070
1203	chr10	29003927	29006449	+	0	NA	Intergenic	Intergenic	-18882	NM_026336	67719	Mm.440480	NM_026336	ENSMUSG00000015519	2310057J18Rik	2210414P04Rik|Leg1	RIKEN cDNA 2310057J18 gene	protein-coding	6.853	0.446	0.309	1.197	1.965	1.180	2.520	3.257	1.014	1.588	1.908	2.693	3.341	2.354	1.898	0.844	6.857	0.722	1.008	1.344	1.264	0.480	0.812	0.969	1.364
4261	chr13	81021292	81027795	+	0	NA	intron (NR_015587, intron 1 of 1)	IAPEY3-int|LTR|ERVK	60469	NR_015587	319983	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	10.276	9.664	4.337	10.328	6.960	3.848	6.558	8.501	9.487	12.722	8.783	6.605	9.786	10.713	8.800	10.032	7.289	11.078	7.282	3.256	2.639	6.096	3.985	3.561	9.274
10919	chr4	149955696	149958985	+	0	NA	Intergenic	Intergenic	-2334	NM_029035	74646	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	9.659	7.273	3.578	8.160	10.350	8.380	9.039	9.236	10.198	10.983	6.820	5.990	10.499	14.156	9.561	11.455	6.440	8.639	3.316	2.150	1.302	3.339	1.644	1.445	9.839
4429	chr13	114016509	114018879	+	0	NA	intron (NM_172595, intron 4 of 4)	intron (NM_172595, intron 4 of 4)	133898	NR_045836	319803	Mm.386896	NM_177004		A430090L17Rik	-	RIKEN cDNA A430090L17 gene	ncRNA	3.725	1.227	0.713	2.731	2.391	1.254	2.677	2.940	3.274	5.016	4.384	0.837	3.967	6.475	5.279	8.294	3.444	4.374	0.413	0.447	0.285	1.284	0.199	0.109	5.686
1354	chr10	62112787	62115010	+	0	NA	Intergenic	RMER5|LTR|ERV1	-2885	NM_027251	69894	Mm.294126	NM_027251	ENSMUSG00000020083	2010107G23Rik	AA545165	RIKEN cDNA 2010107G23 gene	protein-coding	9.464	11.276	3.125	10.450	3.024	2.609	6.145	5.959	5.198	8.577	4.998	3.046	5.867	8.026	8.028	10.510	5.654	8.606	nan	2.810	3.598	6.484	3.005	4.281	14.230
10390	chr4	114656553	114660176	+	0	NA	Intergenic	Intergenic	-163356	NR_033617	433746	Mm.388908	NR_033617	ENSMUSG00000055198	Gm12830	OTTMUSG00000008584	predicted gene 12830	ncRNA	5.440	9.458	3.588	5.696	3.901	2.896	5.140	6.443	4.499	7.819	4.560	3.393	5.050	6.120	6.003	6.625	3.352	6.074	4.643	2.818	2.343	4.931	2.972	2.723	8.292
4066	chr13	45792893	45795596	+	0	NA	intron (NM_001199304, intron 4 of 6)	intron (NM_001199304, intron 4 of 6)	170747	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	4.999	1.060	0.770	nan	5.495	2.674	5.586	4.666	2.563	3.448	1.104	0.948	4.466	6.623	4.752	5.600	3.728	4.487	1.936	nan	1.001	0.676	1.738	1.381	6.057
8	chr1	7077361	7080796	+	0	NA	Intergenic	MTA_Mm-int|LTR|ERVL-MaLR	-9842	NM_183028	319263	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	10.079	11.540	5.521	9.120	5.252	2.698	7.063	7.714	6.952	8.819	6.315	4.024	8.226	9.420	8.444	11.182	7.903	8.929	4.024	2.897	1.861	4.327	3.326	2.599	8.466
7479	chr19	4294124	4306334	+	0	NA	intron (NM_001290818, intron 1 of 20)	intron (NM_001290818, intron 1 of 20)	5993	NM_130863	110355	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	6.279	18.397	5.861	7.182	2.825	1.533	3.906	6.645	nan	5.482	5.499	2.558	3.090	4.809	4.874	5.564	4.531	5.310	1.550	2.019	2.200	3.421	1.493	1.279	8.866
2359	chr11	68879682	68881410	+	0	NA	Intergenic	Intergenic	-8007	NM_177060	320040	Mm.305696	NM_177060	ENSMUSG00000046490	Rnf222	9930039A11Rik	ring finger protein 222	protein-coding	5.239	2.065	0.772	4.874	2.786	1.348	4.102	5.783	4.528	4.455	1.939	1.773	5.421	8.540	5.844	6.852	5.405	4.974	2.183	1.252	1.401	2.678	nan	1.711	4.847
10220	chr4	82229932	82239164	+	0	NA	Intergenic	Intergenic	169168	NR_040659	545641	Mm.216028	NR_040659	ENSMUSG00000085022	Gm5860	EG545641	predicted gene 5860	ncRNA	0.558	0.543	0.409	0.558	0.312	0.186	0.438	0.575	0.534	0.622	0.466	0.624	0.370	0.381	0.356	0.522	0.441	0.606	nan	10.400	6.504	16.767	1.677	1.300	0.465
15646	chr9	123832698	123834353	+	0	NA	intron (NM_148925, intron 6 of 18)	intron (NM_148925, intron 6 of 18)	18136	NM_148925	17281	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	4.994	14.548	6.608	nan	2.028	0.567	nan	1.920	nan	2.660	2.898	1.801	nan	7.021	nan	2.541	1.271	2.634	5.949	5.957	2.653	3.997	1.501	0.744	1.976
12787	chr6	134846516	134848761	+	0	NA	intron (NM_177687, intron 1 of 4)	intron (NM_177687, intron 1 of 4)	17439	NM_177687	232430	Mm.267010	NM_177687	ENSMUSG00000032652	Crebl2	AI046348|B230205M03	cAMP responsive element binding protein-like 2	protein-coding	8.019	11.307	4.764	7.446	3.206	1.316	7.044	7.209	6.040	7.330	5.256	5.492	7.528	7.531	nan	8.827	8.854	6.776	8.565	5.682	4.107	8.343	7.103	6.029	nan
15700	chrX	33651795	33653557	+	0	NA	Intergenic	L1_Mur3|LINE|L1	-4464	NM_001282034	100040722		NM_001282034	ENSMUSG00000095934	Btbd35f13	Gm2927	BTB domain containing 35, family member 13	protein-coding	6.152	2.300	0.728	4.702	4.195	2.252	3.181	3.815	3.208	6.060	5.107	2.374	3.931	5.081	3.384	4.430	3.522	5.140	1.675	1.293	1.355	1.519	1.210	0.820	8.028
11763	chr5	130804407	130810323	+	0	NA	intron (NM_021371, intron 4 of 5)	MTE2a|LTR|ERVL-MaLR	358573	NM_021371	140904	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	1.867	0.772	0.381	1.599	0.864	0.497	2.198	2.001	1.647	nan	0.393	0.393	1.869	2.113	nan	3.114	nan	nan	nan	2.557	1.536	4.502	nan	0.803	nan
11220	chr5	47904262	47905771	+	0	NA	Intergenic	Intergenic	-78139	NR_111900	20563	Mm.289739	NM_178804	ENSMUSG00000031558	Slit2	Drad-1|E030015M03Rik|E130320P19Rik|Slil3|mKIAA4141|slit-2	slit homolog 2 (Drosophila)	protein-coding	3.311	0.716	0.141	1.149	0.953	0.496	4.180	3.538	3.297	3.249	3.415	1.284	5.629	3.711	4.907	4.594	3.543	4.044	0.619	0.263	0.107	0.554	0.132	0.189	2.295
11651	chr5	121010443	121015750	+	0	NA	Intergenic	Intergenic	-3004	NM_001302344	19894	Mm.181166	NM_011286	ENSMUSG00000029608	Rph3a	2900002P20Rik|AU022689|AW108370	rabphilin 3A	protein-coding	2.510	0.813	0.763	2.788	2.135	1.579	3.622	4.196	2.076	1.920	1.858	1.812	2.049	3.210	2.818	2.441	3.325	2.257	nan	nan	6.357	5.259	7.348	7.405	2.629
6375	chr17	23797483	23799219	+	0	NA	Intergenic	B4|SINE|B4	-4836	NM_175229	75956	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	2.915	1.164	0.410	2.351	0.719	0.889	4.595	4.484	1.559	2.194	1.830	1.246	2.481	4.101	4.135	4.612	3.197	3.667	2.365	1.354	1.334	2.564	2.578	1.327	5.109
14870	chr9	14530530	14535253	+	0	NA	Intergenic	Intergenic	32272	NM_023153	66070	Mm.245938	NM_023153	ENSMUSG00000004096	Cwc15	0610040D20Rik|2900052N06Rik|Ed1|c11orf5|mED1	CWC15 spliceosome-associated protein	protein-coding	6.453	2.488	1.098	4.033	1.854	0.807	3.967	4.891	5.375	6.491	2.762	1.365	6.423	7.364	5.885	7.716	4.549	5.740	1.695	0.903	0.486	1.015	1.497	1.117	9.018
7790	chr19	43742993	43752209	+	0	NA	intron (NM_144874, intron 3 of 8)	MTC|LTR|ERVL-MaLR	5399	NM_144874	226139	Mm.248237	NM_144874	ENSMUSG00000040018	Cox15	2900026G05Rik	cytochrome c oxidase assembly protein 15	protein-coding	5.342	5.616	2.278	4.264	3.763	2.732	4.944	9.106	3.508	4.477	3.912	2.867	3.896	6.532	5.356	4.681	4.911	nan	1.401	1.571	1.300	3.229	2.170	1.918	7.134
14850	chr9	9170835	9172983	+	0	NA	intron (NM_027823, intron 2 of 22)	intron (NM_027823, intron 2 of 22)	-64379	NR_045754	100579151	Mm.412450	NR_045754	ENSMUSG00000085253	Gm16833	-	predicted gene, 16833	ncRNA	1.562	nan	0.521	0.877	0.356	0.152	1.043	1.407	1.246	0.955	6.569	1.671	0.986	0.877	1.015	1.049	nan	nan	nan	0.584	0.193	0.355	0.330	0.044	nan
9683	chr3	107807501	107809900	+	0	NA	Intergenic	Intergenic	-48231	NM_001113529	12977	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	3.080	0.489	0.471	1.187	1.528	1.125	4.081	4.033	1.102	1.552	1.417	1.509	3.549	5.042	2.742	2.610	3.110	3.351	0.618	0.961	1.022	0.644	1.023	0.704	1.773
13884	chr7	148264223	148266559	+	0	NA	Intergenic	Intergenic	2950556	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	3.732	nan	0.377	nan	2.062	0.960	5.280	8.413	nan	4.904	10.480	3.821	6.280	5.547	6.259	6.646	3.431	7.000	3.243	0.980	1.319	5.624	nan	1.478	9.912
12164	chr6	38050548	38076341	+	0	NA	intron (NM_080467, intron 14 of 20)	RLTR1A2_MM|LTR|ERV1	-16448	NM_177200	320590	Mm.197449	NM_177200	ENSMUSG00000029830	Svopl	9430071P14Rik	SV2 related protein homolog (rat)-like	protein-coding	7.334	0.631	0.360	3.737	5.542	3.747	8.991	8.727	5.514	9.084	0.665	0.881	9.820	12.575	8.027	nan	8.237	8.886	nan	0.758	0.681	nan	nan	0.640	nan
4993	chr14	122296986	122317172	+	0	NA	intron (NM_029556, intron 1 of 7)	intron (NM_029556, intron 1 of 7)	-73441	NR_015532	68245	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	1.516	13.620	7.537	1.474	0.793	0.342	0.695	1.188	1.225	1.194	0.666	0.484	0.805	0.948	nan	1.237	0.847	1.431	0.825	1.171	0.820	0.614	0.769	0.503	1.304
8611	chr2	122201686	122203544	+	0	NA	intron (NM_028914, intron 6 of 6)	intron (NM_028914, intron 6 of 6)	16343	NM_028914	74401	Mm.374834	NM_028914	ENSMUSG00000027229	Terb2	4933406J08Rik	telomere repeat binding bouquet formation protein 2	protein-coding	5.742	8.389	4.048	6.610	2.940	1.769	5.007	5.318	3.998	4.938	5.185	2.954	nan	6.754	5.341	nan	6.976	5.488	5.031	4.768	2.521	5.290	3.998	3.303	nan
6631	chr17	43525325	43532375	+	0	NA	Intergenic	MLT2B2|LTR|ERVL	14789	NM_001254953	100043332	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding	6.663	0.742	0.351	7.585	5.461	3.526	4.338	4.715	4.834	5.878	2.604	1.963	5.418	6.509	5.212	7.742	6.056	6.993	1.170	1.661	1.132	0.835	1.722	1.601	7.114
11549	chr5	110536209	110537149	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-7676	NM_198306	231605	Mm.275748	NM_198306	ENSMUSG00000033316	Galnt9	GalNAc-T9	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9	protein-coding	13.177	14.601	6.230	10.784	5.324	2.401	12.077	11.049	4.510	16.798	10.389	3.825	9.191	16.839	10.986	11.305	9.560	7.981	5.961	4.789	5.377	7.887	8.877	6.953	18.170
13366	chr7	87318243	87320327	+	0	NA	intron (NM_015760, intron 8 of 17)	intron (NM_015760, intron 8 of 17)	72636	NM_001285833	50490	Mm.31748	NM_015760	ENSMUSG00000030562	Nox4	AI648021	NADPH oxidase 4	protein-coding	2.123	1.414	1.218	1.380	1.920	1.648	2.568	5.968	nan	1.696	1.883	3.314	1.554	3.254	1.487	nan	nan	nan	1.785	2.599	2.492	nan	2.751	3.295	nan
8577	chr2	119389998	119394982	+	0	NA	intron (NM_026574, intron 29 of 35)	intron (NM_026574, intron 29 of 35)	41248	NM_026929	69065	Mm.35083	NM_026929	ENSMUSG00000027313	Chac1	1810008K03Rik	ChaC, cation transport regulator 1	protein-coding	3.574	1.683	0.877	1.530	1.660	1.274	2.973	5.681	2.157	2.608	0.554	0.720	nan	3.670	2.986	nan	2.397	3.077	0.764	0.984	1.056	0.515	0.985	0.728	nan
14419	chr8	87823080	87826502	+	0	NA	intron (NM_033327, intron 3 of 7)	intron (NM_033327, intron 3 of 7)	-20352	NM_001310520	94187	Mm.23452	NM_033327	ENSMUSG00000045333	Zfp423	Ebfaz|Roaz|Zfp104|Znf423|ataxia1|mKIAA0760|nur12	zinc finger protein 423	protein-coding	6.575	6.691	3.515	5.598	5.947	4.858	6.710	5.134	nan	4.887	3.611	2.133	6.714	7.653	5.636	5.198	4.851	4.610	nan	3.847	4.575	5.073	3.093	3.326	6.864
8948	chr2	163483869	163490726	+	0	NA	Intergenic	Intergenic	-5021	NM_001099331	100043899	Mm.442535	NM_001099331	ENSMUSG00000078949	R3hdml	OTTMUSG00000001070	R3H domain containing-like	protein-coding	4.316	14.216	8.774	4.423	2.313	1.430	2.292	2.706	2.457	3.361	1.391	1.522	2.879	3.180	3.101	3.699	3.371	3.091	nan	3.085	2.653	2.515	1.816	1.620	nan
12028	chr6	5061821	5066037	+	0	NA	intron (NM_181595, intron 4 of 15)	intron (NM_181595, intron 4 of 15)	130017	NM_011134	18979	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	4.039	0.481	0.292	3.290	1.647	0.794	7.085	5.662	4.987	4.718	0.491	1.063	8.342	7.496	9.644	11.037	6.209	6.485	1.232	0.651	0.262	1.512	1.083	0.499	nan
5215	chr15	59146020	59151423	+	0	NA	Intergenic	Intergenic	-66695	NM_144800	211401	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	2.494	2.217	1.202	nan	0.918	0.713	nan	4.510	nan	nan	2.948	1.900	2.220	1.962	3.436	nan	2.591	2.886	6.277	2.641	1.926	4.532	5.773	4.362	2.930
14880	chr9	20692241	20694080	+	0	NA	intron (NM_173777, intron 1 of 5)	L1MD3|LINE|L1	35054	NM_173777	244723	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	5.127	12.303	4.702	5.031	2.257	1.013	3.930	4.446	3.224	3.995	4.214	2.375	3.892	4.539	5.724	7.512	3.404	5.033	3.595	1.353	2.023	4.663	1.989	1.130	10.154
12882	chr6	148160820	148162611	+	0	NA	intron (NM_001347516, intron 8 of 11)	intron (NM_001347516, intron 8 of 11)	-50573	NR_015615	320737	Mm.137858	NR_015615		4732416N19Rik	-	RIKEN cDNA 4732416N19 gene	ncRNA	6.149	11.317	5.571	nan	2.993	1.521	5.874	6.091	4.719	nan	4.667	2.644	5.993	5.739	7.405	8.509	6.052	7.514	3.881	nan	1.155	nan	1.433	1.325	nan
5970	chr16	30036582	30039113	+	0	NA	intron (NR_045878, intron 2 of 3)	intron (NR_045878, intron 2 of 3)	1632	NR_045878	71528	Mm.297640	NR_045878		9030404E10Rik	-	RIKEN cDNA 9030404E10 gene	ncRNA	6.194	5.216	2.405	3.065	2.747	1.692	3.830	3.108	3.163	4.627	1.484	1.147	4.994	9.345	5.112	6.955	3.608	6.800	0.713	0.785	0.542	0.878	nan	1.219	7.104
4094	chr13	48418644	48420975	+	0	NA	Intergenic	L1VL2|LINE|L1	93601	NM_001164575	67911	Mm.251375	NM_026450	ENSMUSG00000050954	Zfp169	1700025J14Rik|4930429A13Rik|BE688704	zinc finger protein 169	protein-coding	nan	0.399	0.485	nan	0.115	0.108	0.332	0.300	0.298	0.277	0.252	0.324	0.072	0.205	0.250	0.435	0.325	nan	5.040	nan	2.529	5.076	5.843	4.246	nan
3540	chr12	82798156	82800620	+	0	NA	intron (NM_001310478, intron 2 of 17)	L1MD1|LINE|L1	139767	NR_046045	74283	Mm.398247	NR_046045	ENSMUSG00000100890	1700085C21Rik	-	RIKEN cDNA 1700085C21 gene	ncRNA	8.132	0.625	0.336	5.298	4.179	1.437	3.713	3.777	6.066	7.892	6.594	4.356	5.289	7.139	5.249	8.340	4.974	7.485	2.141	0.717	0.285	1.267	1.192	0.416	11.177
14891	chr9	21139322	21146107	+	0	NA	intron (NM_016742, intron 2 of 7)	intron (NM_016742, intron 2 of 7)	7192	NM_016742	12539	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	4.774	1.060	0.767	4.214	3.373	2.934	5.845	4.606	4.531	5.389	4.411	2.361	5.670	7.480	5.340	6.021	4.231	5.906	1.785	1.159	1.353	1.464	1.639	1.235	7.636
13581	chr7	117381086	117391348	+	0	NA	intron (NM_175645, intron 1 of 11)	B4A|SINE|B4	5238	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	3.457	9.810	7.089	3.261	2.384	1.852	1.340	1.408	2.335	2.115	2.604	2.910	1.034	nan	1.553	1.856	1.890	2.505	1.000	1.780	1.571	0.802	0.687	0.680	1.677
6421	chr17	26357875	26360182	+	0	NA	Intergenic	ORR1G|LTR|ERVL-MaLR	-55937	NM_001081656	240055	Mm.133211	NM_001081656	ENSMUSG00000034413	Neurl1b	C230078M08Rik|EG240055	neuralized E3 ubiquitin protein ligase 1B	protein-coding	3.250	0.620	0.685	2.854	2.504	2.528	4.393	4.317	4.391	3.766	2.100	2.378	3.040	5.914	3.184	5.538	7.642	3.744	1.586	1.378	1.687	1.105	2.309	2.671	5.713
4704	chr14	57193957	57195528	+	0	NA	Intergenic	Intergenic	-61131	NM_001010937	14623	Mm.25652	NM_008128	ENSMUSG00000040055	Gjb6	AA958971|Cx30|D14Bwg0506e	gap junction protein, beta 6	protein-coding	7.652	13.908	5.145	8.561	3.604	1.168	4.269	9.098	5.136	6.223	4.970	2.652	5.293	7.734	7.084	9.403	4.022	6.969	5.958	2.716	1.640	3.994	3.154	2.489	9.959
2394	chr11	70021907	70028794	+	0	NA	intron (NM_001109752, intron 1 of 19)	intron (NM_001109752, intron 1 of 19)	6745	NM_007864	13385	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs, large homolog 4 (Drosophila)	protein-coding	4.562	1.036	0.474	4.527	2.992	1.720	4.068	7.213	3.766	4.656	6.283	4.933	7.236	7.516	5.734	6.013	5.102	4.933	1.387	1.787	1.581	4.055	nan	1.340	4.144
1266	chr10	43532615	43538422	+	0	NA	intron (NM_026411, intron 1 of 3)	B1F|SINE|Alu	5476	NM_026411	67851	Mm.209953	NM_026411	ENSMUSG00000019797	1700021F05Rik	-	RIKEN cDNA 1700021F05 gene	protein-coding	0.649	nan	4.846	0.670	0.203	0.105	0.449	0.597	0.606	0.662	0.453	0.752	0.294	0.366	0.930	0.761	0.667	0.755	nan	5.270	4.259	4.934	5.323	4.271	0.676
6578	chr17	35077698	35079225	+	0	NA	3' UTR (NM_027366, exon 3 of 3)	3' UTR (NM_027366, exon 3 of 3)	1519	NM_027366	70274	Mm.250491	NM_027366	ENSMUSG00000013766	Ly6g6e	2310011I02Rik|G6e	lymphocyte antigen 6 complex, locus G6E	protein-coding	1.781	1.867	1.421	2.175	2.948	2.676	3.735	4.511	2.904	2.497	1.487	2.535	2.574	4.060	2.964	3.619	3.919	2.801	0.643	1.699	1.809	0.884	1.509	1.218	2.930
14349	chr8	77185164	77188384	+	0	NA	intron (NM_001083906, intron 5 of 8)	intron (NM_001083906, intron 5 of 8)	284266	NM_001083906	110784	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	0.889	nan	0.442	0.321	0.382	0.459	nan	nan	nan	0.614	0.263	0.310	0.416	0.459	0.377	nan	0.962	0.976	1.980	4.422	4.750	nan	5.210	7.207	nan
8789	chr2	150418119	150419827	+	0	NA	intron (NM_001310645, intron 1 of 3)	intron (NM_001310645, intron 1 of 3)	32528	NM_001310645	668923	Mm.393876	NM_001177550	ENSMUSG00000068130	Zfp442	OTTMUSG00000015730|ZIPO-II	zinc finger protein 442	protein-coding	1.105	8.419	6.096	1.069	1.401	0.701	1.006	2.226	0.947	1.037	0.728	0.435	0.872	1.077	0.867	0.824	1.344	1.525	nan	2.758	1.259	3.216	0.850	0.685	0.997
3419	chr12	73036502	73038147	+	0	NA	Intergenic	AmnSINE2|SINE|Deu	9388	NM_009189	20471	Mm.4645	NM_009189	ENSMUSG00000051367	Six1	BB138287	sine oculis-related homeobox 1	protein-coding	4.172	2.020	1.501	4.157	3.101	3.474	3.188	1.742	4.783	4.060	2.207	2.336	5.175	4.536	3.426	5.840	3.380	4.382	0.881	1.056	1.045	1.245	0.317	0.414	4.071
3326	chr12	53735935	53738445	+	0	NA	intron (NM_013780, intron 4 of 11)	intron (NM_013780, intron 4 of 11)	466684	NM_028133	112407	Mm.133037	NM_028133	ENSMUSG00000035105	Egln3	2610021G09Rik|AI505553|AI648162|Hif-p4h-3|Phd3|SM-20	egl-9 family hypoxia-inducible factor 3	protein-coding	1.497	nan	0.925	1.553	1.159	0.476	1.314	0.857	1.247	0.734	5.354	2.167	0.869	1.184	nan	1.113	1.038	nan	0.735	0.795	0.244	0.557	0.547	0.600	1.063
5433	chr15	79663591	79664645	+	0	NA	intron (NM_028634, intron 2 of 4)	intron (NM_028634, intron 2 of 4)	4891	NM_028634	73739	Mm.294441	NM_028634	ENSMUSG00000022428	Cby1	1110014P06Rik|CBY|PGEA14|Pgea1|arb1	chibby family member 1, beta catenin antagonist	protein-coding	14.131	11.475	3.506	10.713	3.202	2.424	16.107	12.702	4.228	8.415	2.752	3.577	8.853	9.446	10.804	9.507	10.979	9.262	9.805	3.795	5.366	9.046	9.417	9.855	20.485
10430	chr4	118065526	118076329	+	0	NA	intron (NM_009176, intron 2 of 11)	MER44B|DNA|TcMar-Tigger	64019	NM_001285520	20441	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	7.478	0.781	0.649	5.691	5.678	2.718	8.161	7.280	6.810	10.184	1.023	0.846	9.542	12.231	9.058	11.076	6.331	9.308	0.879	1.017	0.636	0.787	0.814	0.526	13.714
4209	chr13	63052482	63054885	+	0	NA	intron (NM_001289926, intron 3 of 15)	Lx|LINE|L1	88790	NM_001289924	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	1.903	1.360	0.701	0.861	1.225	0.155	0.581	0.626	1.033	1.355	1.133	0.629	0.560	1.034	0.544	nan	0.696	1.066	2.785	5.062	3.325	5.189	3.474	2.482	0.740
10774	chr4	138351482	138353183	+	0	NA	intron (NM_028176, intron 1 of 3)	B3|SINE|B2	15623	NM_028176	72269	Mm.46182	NM_028176	ENSMUSG00000028755	Cda	2210401N16Rik	cytidine deaminase	protein-coding	2.694	1.143	1.276	0.655	0.791	0.609	3.422	4.436	nan	2.362	3.191	1.331	2.618	2.232	1.948	2.155	1.353	nan	7.399	4.406	5.799	7.647	6.208	6.341	2.722
11458	chr5	93693971	93698121	+	0	NA	Intergenic	Intergenic	-24583	NM_001164285	381654	Mm.326591	NM_001164284	ENSMUSG00000070686	C87414	-	expressed sequence C87414	protein-coding	10.076	13.910	6.047	7.397	4.551	1.911	7.574	9.116	6.787	10.341	5.161	3.581	7.912	9.920	9.361	9.996	6.922	8.808	4.305	2.909	2.514	4.480	2.867	2.288	11.076
15852	chrX	157038832	157040674	+	0	NA	Intergenic	Lx5c|LINE|L1	375533	NM_011077	18675	Mm.2529	NM_011077	ENSMUSG00000057457	Phex	Gy|HPDR|HPDR1|Hyp|PEX	phosphate regulating endopeptidase homolog, X-linked	protein-coding	0.913	0.494	0.162	1.639	0.987	0.415	0.956	1.470	1.135	1.138	0.652	0.829	0.980	3.017	1.937	0.988	0.814	1.849	0.737	0.255	0.067	1.013	0.140	0.260	1.160
10052	chr4	46546698	46549378	+	0	NA	intron (NM_178893, intron 5 of 12)	MTB_Mm-int|LTR|ERVL-MaLR	-11897	NM_029077	74735	Mm.240252	NM_029077	ENSMUSG00000039853	Trim14	5830400N10Rik|pub	tripartite motif-containing 14	protein-coding	7.988	9.627	2.011	7.149	2.665	1.590	6.368	7.780	4.312	7.649	4.869	4.081	5.074	8.038	6.687	8.594	4.336	6.924	8.369	4.131	3.201	6.716	4.172	3.393	14.028
4784	chr14	66380061	66381523	+	0	NA	Intergenic	URR1A|DNA|hAT-Charlie	36496	NM_019675	56471	Mm.35474	NM_019675	ENSMUSG00000022044	Stmn4	Lagl|R75359|RB3	stathmin-like 4	protein-coding	1.287	0.860	0.944	0.462	0.537	0.621	3.097	5.267	1.011	1.151	1.712	1.105	2.072	3.653	2.015	1.727	0.722	0.994	0.482	nan	0.486	1.218	0.773	0.753	1.409
13661	chr7	121787622	121791619	+	0	NA	Intergenic	ID_B1|SINE|B4	55141	NM_011326	20278	Mm.35247	NM_011326	ENSMUSG00000000216	Scnn1g	SCNEG	sodium channel, nonvoltage-gated 1 gamma	protein-coding	0.371	0.528	0.395	0.371	0.181	0.115	0.275	0.337	0.323	0.351	0.229	0.265	0.173	nan	0.239	0.465	0.410	0.484	5.453	1.868	1.692	5.246	6.134	4.254	0.250
7514	chr19	7048495	7051486	+	0	NA	Intergenic	RMER15|LTR|ERVL	-6778	NM_134147	107227	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding	7.027	8.954	1.909	7.757	2.275	1.001	8.567	8.814	4.896	7.785	4.974	3.138	6.924	7.902	8.698	10.650	6.148	8.188	3.174	1.440	1.744	7.114	2.075	1.677	15.203
39	chr1	17591140	17593335	+	0	NA	Intergenic	Intergenic	-9664	NM_053191	94227	Mm.442452	NM_053191	ENSMUSG00000067780	Pi15	P24TI|P25TI|PI-15|SugarCrisp	peptidase inhibitor 15	protein-coding	nan	0.622	0.707	1.459	0.508	0.359	0.256	0.352	0.693	0.593	4.251	1.417	0.365	0.584	0.405	0.843	0.622	0.750	0.636	0.679	0.234	0.427	0.451	0.208	0.475
11383	chr5	86620626	86623557	+	0	NA	intron (NM_178730, intron 1 of 10)	Lx8|LINE|L1	10333	NM_178730	243083	Mm.106867	NM_178730	ENSMUSG00000048764	Tmprss11f	4631408C20|4732406D01Rik	transmembrane protease, serine 11f	protein-coding	1.732	0.727	0.487	1.451	1.195	0.704	1.565	1.307	1.558	1.729	5.551	2.516	1.567	1.944	1.514	1.407	1.419	2.462	0.521	0.325	0.209	0.297	0.458	0.325	0.603
11375	chr5	77591740	77598597	+	0	NA	Intergenic	ORR1B2|LTR|ERVL-MaLR	129680	NR_131050	69370	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	4.889	1.496	1.002	4.851	3.080	1.867	4.569	3.592	2.745	3.588	4.260	2.318	5.131	5.788	3.558	3.934	3.173	5.941	0.726	1.041	0.876	1.034	0.723	0.544	3.696
10300	chr4	98781718	98784201	+	0	NA	intron (NM_172872, intron 2 of 9)	intron (NM_172872, intron 2 of 9)	-10809	NR_040437	399570	Mm.71924	NR_040437	ENSMUSG00000085843	Kank4os	A730085A09Rik	KN motif and ankyrin repeat domains 4, opposite strand	ncRNA	4.746	nan	0.845	3.084	4.050	2.873	4.242	5.438	3.865	3.462	4.012	4.279	3.381	4.926	nan	3.364	2.831	3.263	1.544	1.317	1.510	nan	1.524	1.329	2.972
558	chr1	129136262	129138070	+	0	NA	Intergenic	Intergenic	-136138	NM_172485	210417	Mm.380518	NM_172485	ENSMUSG00000042581	Thsd7b	1700074E13Rik|B930082A18|D130067I03Rik	thrombospondin, type I, domain containing 7B	protein-coding	9.393	9.146	6.208	5.106	5.669	3.977	5.637	7.452	5.054	5.865	6.361	6.719	5.059	5.648	4.990	7.274	6.261	5.164	2.985	3.306	3.253	3.321	2.187	1.288	6.774
7854	chr19	47652865	47656830	+	0	NA	intron (NM_001290825, intron 37 of 53)	intron (NM_001290825, intron 37 of 53)	37195	NM_007732	12821	Mm.1225	NM_007732	ENSMUSG00000025064	Col17a1	BP180|Bpag|Bpag2	collagen, type XVII, alpha 1	protein-coding	6.502	4.888	1.233	7.539	3.112	1.895	6.177	7.848	5.529	10.173	6.636	4.371	5.454	6.332	7.289	8.343	6.081	9.263	2.440	1.279	0.938	4.016	1.849	2.263	9.642
12543	chr6	99896690	99897802	+	0	NA	Intergenic	MIRb|SINE|MIR	-170854	NM_001170419	50501	Mm.87365	NM_015768	ENSMUSG00000030069	Prok2	Bv8|PK2|Prok1	prokineticin 2	protein-coding	2.009	0.744	0.267	1.687	1.123	0.113	3.873	2.930	2.078	2.343	0.697	0.546	3.357	3.299	2.298	5.159	2.909	3.139	nan	nan	0.221	0.503	0.693	0.155	3.125
9859	chr3	145586439	145588580	+	0	NA	intron (NM_001346521, intron 6 of 10)	B1_Mus2|SINE|Alu	11293	NM_001346521	229937	Mm.24586	NM_001081094	ENSMUSG00000074182	Znhit6	2410019A14Rik	zinc finger, HIT type 6	protein-coding	8.019	13.839	3.674	10.901	4.395	3.275	7.073	6.661	5.076	9.865	7.567	4.407	8.597	8.755	8.579	8.606	4.774	9.367	5.916	2.202	2.175	5.877	3.004	4.085	11.044
8806	chr2	151930111	151931723	+	0	NA	intron (NM_009641, intron 4 of 8)	intron (NM_009641, intron 4 of 8)	19710	NM_009641	11602	Mm.189536	NM_009641	ENSMUSG00000027460	Angpt4	ANG-3|ANG-4|Agpt4|Ang3	angiopoietin 4	protein-coding	7.782	4.276	1.813	6.992	7.557	4.113	4.538	7.626	3.006	9.964	6.313	3.200	4.173	6.642	5.792	6.915	3.820	6.393	nan	2.849	4.351	5.331	5.834	6.378	11.614
10509	chr4	124798734	124805701	+	0	NA	promoter-TSS (NM_008636)	promoter-TSS (NM_008636)	-332	NM_008636	17764	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding	8.681	17.772	5.224	9.765	4.093	2.580	5.770	8.422	5.958	6.591	7.206	4.701	6.426	7.012	7.120	7.341	3.104	7.627	2.503	1.717	1.933	2.942	1.362	1.622	9.330
8091	chr2	30558030	30559186	+	0	NA	Intergenic	MIR3|SINE|MIR	-36436	NM_030137	78617	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	2.844	1.531	1.182	1.225	2.627	2.437	3.967	3.986	nan	1.688	1.863	0.980	2.529	2.586	2.686	2.994	3.456	1.937	3.446	4.718	6.299	3.757	5.338	4.655	3.457
15026	chr9	44686284	44691447	+	0	NA	intron (NM_153537, intron 20 of 21)	intron (NM_153537, intron 20 of 21)	15632	NM_021481	58866	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding	4.286	13.866	6.215	5.559	2.542	1.666	3.964	3.452	2.508	6.384	2.853	2.106	3.206	4.325	nan	nan	2.456	4.359	5.325	4.120	3.978	5.750	5.646	5.205	nan
7184	chr18	38512912	38514907	+	0	NA	Intergenic	MT2A|LTR|ERVL	87359	NM_011898	24066	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty homolog 4 (Drosophila)	protein-coding	5.251	0.934	1.078	1.936	2.484	1.980	4.310	1.835	3.511	3.353	1.294	1.154	3.691	4.721	2.164	3.877	2.692	3.179	1.770	0.957	1.969	0.693	1.509	2.836	3.293
15705	chrX	34335166	34336862	+	0	NA	Intergenic	ETnERV3-int|LTR|ERVK	-174430	NM_001243001	100042168	Mm.489575	NM_001243001	ENSMUSG00000078218	Btbd35f3	Gm3706	BTB domain containing 35, family member 3	protein-coding	6.354	8.490	2.199	6.885	2.601	1.833	3.706	5.325	3.850	7.311	5.817	2.205	4.121	6.429	5.232	7.519	4.240	6.220	3.458	2.734	2.563	3.704	2.532	1.878	9.180
12270	chr6	57531103	57532816	+	0	NA	intron (NM_175523, intron 1 of 6)	intron (NM_175523, intron 1 of 6)	3467	NM_175523	243382	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	4.483	10.220	5.361	4.561	3.771	1.481	2.731	3.609	3.038	3.749	1.523	1.333	4.478	4.046	4.957	nan	4.819	5.821	6.067	2.276	3.039	3.876	4.002	3.247	6.812
6101	chr16	45871129	45874621	+	0	NA	Intergenic	Intergenic	-28497	NM_001252442	208177	Mm.211477	NM_153412	ENSMUSG00000033149	Phldb2	AV253284|C820004H04Rik|LL5b|LL5beta	pleckstrin homology like domain, family B, member 2	protein-coding	6.940	0.559	0.519	4.928	5.989	2.826	4.229	5.591	5.272	5.317	2.255	1.552	8.038	8.074	4.798	6.827	4.615	8.072	2.102	1.730	1.219	2.026	1.680	1.341	3.984
4570	chr14	31376821	31378401	+	0	NA	intron (NM_011894, intron 6 of 8)	intron (NM_011894, intron 6 of 8)	40066	NM_001347585	24056	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	3.887	1.285	0.250	2.547	1.215	0.590	1.918	9.076	2.157	2.210	2.007	2.021	1.677	4.872	3.709	3.339	2.508	4.010	0.635	0.649	0.217	nan	0.487	0.060	5.784
10238	chr4	86519770	86523453	+	0	NA	intron (NM_001081096, intron 1 of 3)	intron (NM_001081096, intron 1 of 3)	36692	NM_001081096	75811	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	3.732	nan	0.823	6.518	2.492	1.759	1.671	nan	nan	3.936	1.517	1.601	1.535	3.117	3.027	3.953	1.439	4.026	0.612	nan	1.008	2.487	1.374	1.066	nan
2350	chr11	68526863	68530083	+	0	NA	exon (NM_001081566, exon 6 of 20)	exon (NM_001081566, exon 6 of 20)	25454	NR_126154	104709	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase, regulatory subunit 6	protein-coding	0.733	0.520	0.926	0.596	0.283	0.187	0.419	0.319	0.530	0.588	0.327	0.337	0.130	nan	0.514	0.543	0.580	0.615	4.528	2.480	1.693	1.531	5.815	4.776	nan
2479	chr11	76139011	76142736	+	0	NA	intron (NM_026664, intron 4 of 21)	L1Md_F2|LINE|L1	38757	NM_026664	68299	Mm.46397	NM_026664	ENSMUSG00000017288	Vps53	2010002A08Rik|2310040I21Rik|3100002B05Rik|Hccs1	VPS53 GARP complex subunit	protein-coding	4.428	0.974	0.393	2.291	1.603	0.822	nan	1.578	3.328	6.714	3.896	3.839	3.887	2.720	nan	2.057	4.916	nan	1.865	1.977	nan	4.543	1.084	0.778	7.043
1	chr1	4481811	4483599	+	0	NA	Intergenic	Intergenic	14649	NM_001289464	20671	Mm.279103	NM_011441	ENSMUSG00000025902	Sox17	-	SRY (sex determining region Y)-box 17	protein-coding	2.444	1.256	0.208	5.663	0.387	0.457	1.065	0.944	1.863	5.527	0.983	0.501	0.761	1.324	2.188	2.719	0.671	3.994	0.385	0.190	0.295	0.608	0.295	0.160	4.911
12262	chr6	55298891	55301815	+	0	NA	intron (NM_001142781, intron 14 of 17)	L1MC4a|LINE|L1	-35946	NM_007472	11826	Mm.18625	NM_007472	ENSMUSG00000004655	Aqp1	CHIP28	aquaporin 1	protein-coding	3.763	0.605	0.270	1.468	2.297	1.018	4.800	6.910	3.390	4.917	0.515	0.549	3.347	8.760	4.840	3.837	4.180	3.122	nan	0.363	0.252	0.389	0.399	0.196	4.239
506	chr1	120284552	120286879	+	0	NA	Intergenic	Intergenic	-14633	NM_001085409	68428	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	15.557	13.074	5.419	11.101	6.750	2.757	10.487	9.349	6.816	10.548	8.038	6.250	11.178	13.010	10.931	14.985	11.883	11.213	6.733	4.652	3.821	6.818	5.475	5.043	15.625
5929	chr16	24339170	24341912	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	-52809	NM_178665	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	1.328	8.932	7.063	1.116	1.233	1.034	0.688	1.043	0.940	1.005	0.844	0.962	nan	1.088	0.859	nan	0.869	1.207	0.589	0.815	0.536	0.398	nan	0.727	0.703
12991	chr7	20398014	20418241	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-9815	NM_001166844	100043536	Mm.484979	NM_001166844	ENSMUSG00000096386	Vmn1r100	ENSMUSG00000074331|Gm10671	vomeronasal 1 receptor 100	protein-coding	8.222	7.141	2.709	7.561	5.566	3.763	6.769	9.358	5.560	7.346	5.546	3.803	6.216	7.749	6.669	7.713	6.253	7.717	4.102	2.786	3.002	4.405	3.455	2.883	8.788
5554	chr15	88531423	88534684	+	0	NA	Intergenic	Intergenic	-67249	NM_027306	70073	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	1.903	0.863	0.520	nan	4.293	1.830	2.334	2.464	nan	3.343	0.595	0.653	4.365	6.014	nan	2.145	nan	nan	nan	0.475	0.786	nan	0.542	0.235	nan
4184	chr13	59065214	59070291	+	0	NA	intron (NM_001025074, intron 16 of 17)	intron (NM_001025074, intron 16 of 17)	260055	NM_001025074	18212	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	nan	0.431	0.281	0.541	0.262	0.172	0.130	0.217	0.388	0.367	0.662	0.335	0.153	nan	0.201	nan	0.163	nan	3.465	2.697	1.910	4.979	2.207	1.785	nan
7950	chr2	6185189	6189439	+	0	NA	Intergenic	Intergenic	-5937	NR_040333	320132	Mm.445891	NR_040333	ENSMUSG00000087125	A230108P19Rik	-	RIKEN cDNA A230108P19 gene	ncRNA	3.519	1.657	1.197	2.906	2.510	1.456	3.683	7.707	2.294	2.425	5.045	1.427	3.885	4.442	4.942	7.380	4.685	5.535	1.176	0.849	0.646	1.435	0.833	0.742	6.164
15521	chr9	110309660	110311713	+	0	NA	intron (NM_001081381, intron 2 of 6)	intron (NM_001081381, intron 2 of 6)	5494	NM_001081381	72341	Mm.374250	NM_001081381	ENSMUSG00000054836	Elp6	2610001P13Rik|2610002I17Rik|AV159994|Tmem103	elongator acetyltransferase complex subunit 6	protein-coding	8.414	8.668	3.954	7.215	3.796	1.942	6.724	7.093	nan	6.008	5.009	3.030	5.396	7.542	8.108	10.116	5.615	7.394	4.441	3.510	2.539	5.060	3.558	2.473	13.667
10770	chr4	138265314	138268857	+	0	NA	intron (NM_010623, intron 1 of 14)	intron (NM_010623, intron 1 of 14)	4834	NM_010623	16559	Mm.271936	NM_010623	ENSMUSG00000028758	Kif17	5930435E01Rik|AW492270|Kif17b|mKIAA1405	kinesin family member 17	protein-coding	nan	0.463	0.156	0.346	0.189	0.113	0.618	1.612	nan	1.409	1.196	0.829	1.681	0.542	1.251	1.301	0.765	nan	6.991	2.964	2.222	9.589	4.624	2.247	0.992
8100	chr2	30782448	30785648	+	0	NA	Intergenic	Intergenic	17689	NM_198000	73598	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	6.148	5.965	1.763	4.863	3.869	1.982	5.117	10.324	nan	4.181	4.065	2.186	6.216	7.461	6.312	5.690	3.676	4.784	4.484	2.412	1.836	5.943	2.354	1.510	7.504
7583	chr19	11564898	11569824	+	0	NA	Intergenic	L1_Mur1|LINE|L1	30512	NM_025658	66607	Mm.441056	NM_025658	ENSMUSG00000024678	Ms4a4d	2210417J23Rik	membrane-spanning 4-domains, subfamily A, member 4D	protein-coding	1.050	11.975	8.336	0.990	0.801	0.534	0.726	0.618	nan	0.706	0.338	0.225	0.236	0.311	0.875	nan	1.038	0.891	0.410	1.756	1.281	0.262	0.656	0.448	0.674
12347	chr6	82849599	82851396	+	0	NA	Intergenic	Intergenic	31356	NR_040520	69652	Mm.96357	NR_040520	ENSMUSG00000100291	2310069B03Rik	-	RIKEN cDNA 2310069B03 gene	ncRNA	1.714	0.430	0.364	1.997	4.102	2.188	3.479	1.324	1.382	1.089	0.752	0.621	2.344	4.031	1.715	3.580	2.571	2.089	0.336	0.705	0.916	0.376	0.636	1.064	1.845
9873	chr3	148877892	148880657	+	0	NA	intron (NM_001081298, intron 2 of 23)	intron (NM_001081298, intron 2 of 23)	75361	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	4.277	0.362	0.398	2.991	3.095	1.736	4.409	4.980	3.014	3.828	3.075	1.415	6.629	6.041	5.654	5.472	4.006	4.396	0.883	0.576	0.333	0.603	0.564	0.340	3.763
8600	chr2	120802332	120804911	+	0	NA	intron (NM_001024857, intron 3 of 14)	Lx8|LINE|L1	46797	NM_001024857	140810	Mm.275698	NM_080788	ENSMUSG00000090100	Ttbk2	2610507N02Rik|AI326283|B930008N24Rik|TTK|Ttbk|Ttbk1|mKIAA0847	tau tubulin kinase 2	protein-coding	7.735	9.498	3.416	7.749	3.748	2.292	4.749	5.874	4.641	10.119	3.383	2.411	7.537	9.224	6.469	8.377	5.693	9.065	4.122	1.888	1.779	4.333	2.749	2.689	11.264
2845	chr11	103001168	103004548	+	0	NA	intron (NM_026551, intron 1 of 4)	B2_Mm1t|SINE|B2	-2937	NR_105896	102466988		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	7.681	3.526	1.401	8.862	4.024	1.796	8.012	9.550	nan	5.996	2.691	2.200	5.270	10.150	7.668	8.113	5.516	nan	1.363	1.693	1.546	nan	2.462	2.249	9.815
10075	chr4	48280113	48283183	+	0	NA	intron (NM_010569, intron 1 of 16)	intron (NM_010569, intron 1 of 16)	1888	NM_001281977	16348	Mm.317706	NM_010569	ENSMUSG00000028344	Invs	Nphp2|inv	inversin	protein-coding	1.431	6.834	6.138	1.453	1.736	1.454	1.165	2.164	2.659	2.228	2.418	3.435	1.505	1.117	1.648	1.482	1.185	nan	1.375	0.945	0.934	nan	1.016	0.649	0.852
8537	chr2	116944321	116952362	+	0	NA	Intergenic	MLT1J-int|LTR|ERVL-MaLR	48189	NR_040335	320975	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	8.548	4.079	1.415	6.275	3.036	2.057	10.431	8.777	5.927	11.902	4.366	2.314	9.619	8.689	8.606	nan	9.075	8.579	1.114	1.348	1.583	2.365	1.010	1.348	nan
581	chr1	130486927	130489595	+	0	NA	Intergenic	Intergenic	-25517	NM_010016	13136	Mm.101591	NM_010016	ENSMUSG00000026399	Cd55	Daf|Daf-GPI|Daf1|GPI-DAF	CD55 molecule, decay accelerating factor for complement	protein-coding	4.099	18.044	6.786	5.018	2.302	1.312	3.119	1.979	2.879	3.631	2.095	1.235	2.286	2.494	2.947	2.881	2.816	nan	3.859	3.226	2.200	3.943	2.813	2.510	4.160
4676	chr14	55262411	55268107	+	0	NA	Intergenic	Intergenic	43252	NM_027790	71412	Mm.85484	NM_027790	ENSMUSG00000022209	Dhrs2	5430405K24Rik|Hep27	dehydrogenase/reductase member 2	protein-coding	3.075	nan	0.483	2.307	2.100	1.261	3.295	3.429	2.918	4.575	0.729	0.303	4.501	4.329	3.848	6.379	4.057	3.397	0.444	0.371	0.558	0.491	0.425	0.314	8.153
4200	chr13	60783496	60789460	+	0	NA	promoter-TSS (NM_199148)	promoter-TSS (NM_199148)	-114	NM_199148	218275	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	4.978	1.245	0.337	6.468	2.961	1.423	4.040	4.367	4.627	6.500	2.804	1.742	3.627	7.583	6.091	6.245	2.693	6.883	1.277	1.101	0.704	2.179	1.519	0.865	7.100
11633	chr5	118458823	118462631	+	0	NA	Intergenic	B3|SINE|B2	-99992	NM_001347445	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.258	0.751	0.380	0.512	0.054		0.225	0.318	0.380	0.277	0.214	0.077	0.181	0.155	0.466	0.389	0.289	0.493	3.553	nan	1.171	5.578	nan	1.027	0.556
678	chr1	137410890	137414405	+	0	NA	Intergenic	L1_Mur1|LINE|L1	-452199	NM_030676	26424	Mm.16794	NM_030676	ENSMUSG00000026398	Nr5a2	AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B	nuclear receptor subfamily 5, group A, member 2	protein-coding	5.642	1.725	0.814	2.278	0.650	0.173	2.940	3.472	1.727	2.005	1.611	2.053	1.485	nan	1.894	2.674	1.685	2.210	2.573	1.794	0.770	2.283	3.396	1.239	4.826
3862	chr13	20208215	20220341	+	0	NA	intron (NM_080288, intron 4 of 21)	intron (NM_080288, intron 4 of 21)	123771	NM_080288	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.793	5.971	2.833	1.937	0.680	0.303	2.688	3.247	3.104	3.098	0.607	0.850	4.035	5.777	4.021	2.904	nan	4.494	2.414	1.664	0.740	2.049	2.271	1.305	nan
1517	chr10	80764965	80766914	+	0	NA	intron (NM_199322, intron 2 of 27)	PB1D10|SINE|Alu	10733	NM_199322	208266	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	6.007	10.535	4.148	7.058	2.651	1.093	1.553	1.909	2.709	3.477	2.038	0.968	1.141	3.454	3.711	4.111	1.564	4.492	nan	1.256	1.747	2.266	0.602	0.737	6.907
8941	chr2	163364559	163367846	+	0	NA	intron (NM_021566, intron 2 of 5)	Tigger7|DNA|TcMar-Tigger	31771	NM_021566	59091	Mm.34459	NM_021566	ENSMUSG00000017817	Jph2	1110002E14Rik|JP-2|Jp2	junctophilin 2	protein-coding	1.967	0.855	0.436	1.011	0.459	0.148	3.611	6.036	0.880	0.646	0.300	0.338	2.678	2.790	3.632	5.468	1.955	2.202	nan	0.542	0.233	1.117	1.202	0.803	1.524
14215	chr8	47881894	47892345	+	0	NA	exon (NM_133791, exon 5 of 23)	exon (NM_133791, exon 5 of 23)	62637	NM_029383	75677	Mm.390033	NM_029383	ENSMUSG00000038064	Cldn22	2210404A22Rik|5330431C14Rik|9530051B05Rik	claudin 22	protein-coding	4.685	3.848	2.157	2.815	3.712	1.933	5.066	6.601	4.110	4.233	2.047	2.246	7.356	7.396	6.330	7.522	5.265	5.659	1.177	1.357	0.903	1.368	1.197	0.742	4.780
2808	chr11	101285020	101287918	+	0	NA	intron (NM_026562, intron 5 of 6)	B2_Mm2|SINE|B2	7266	NM_026562	68107	Mm.262369	NM_026562	ENSMUSG00000078653	Cntd1	1700051C09Rik|4921513J16Rik|5430417M23Rik|Cntd	cyclin N-terminal domain containing 1	protein-coding	6.713	5.395	1.943	6.385	4.399	1.707	7.283	7.720	4.318	7.624	3.612	3.708	6.099	8.217	8.305	8.138	5.102	6.438	5.167	nan	2.789	5.560	nan	3.601	8.466
1975	chr11	11631898	11642780	+	0	NA	Intergenic	Lx2B2|LINE|L1	-9501	NM_001305143	102631730	Mm.159430	NM_001305143	ENSMUSG00000062511	4930512M02Rik	-	RIKEN cDNA 4930512M02 gene	protein-coding	nan	9.006	4.489	0.742	0.399	0.158	0.304	0.323	0.642	0.617	0.422	0.204	0.214	0.358	0.515	0.597	0.455	0.685	0.998	nan	0.551	0.769	0.575	0.264	0.623
11786	chr5	135434444	135435584	+	0	NA	exon (NM_146001, exon 14 of 31)	exon (NM_146001, exon 14 of 31)	-40468	NM_148932	107939	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	3.341	0.985	0.751	2.316	3.524	2.425	2.958	4.838	1.833	1.895	5.048	2.363	2.136	4.159	3.056	2.322	0.949	2.648	3.877	2.020	1.832	3.331	4.760	3.032	1.419
1973	chr11	11586299	11592244	+	0	NA	TTS (NM_001305143)	TTS (NM_001305143)	38567	NM_001305143	102631730	Mm.159430	NM_001305143	ENSMUSG00000062511	4930512M02Rik	-	RIKEN cDNA 4930512M02 gene	protein-coding	4.358	20.091	9.121	3.926	1.466	0.658	1.201	0.916	2.313	2.629	1.309	1.087	1.237	1.288	2.158	2.190	1.910	2.610	0.908	nan	0.597	0.499	0.260	0.142	1.805
11443	chr5	93173985	93176278	+	0	NA	TTS (NM_001009818)	TTS (NM_001009818)	31364	NM_017367	12453	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	7.003	0.693	0.337	6.751	6.365	3.234	8.149	5.892	6.946	6.986	4.366	4.447	7.962	7.908	8.366	7.611	7.241	9.312	6.822	2.760	2.311	7.217	5.588	3.964	7.321
12230	chr6	51025447	51027576	+	0	NA	Intergenic	Intergenic	243399	NR_029719	387166		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	0.764	0.556	0.356	1.098	0.203	0.017	5.518	0.406	2.172	1.924	3.107	0.551	4.722	3.600	2.131	4.166	1.002	nan	nan	0.319	0.265	0.236	0.324	0.133	1.050
8214	chr2	38373925	38376338	+	0	NA	Intergenic	Intergenic	23823	NM_010710	16870	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	6.162	1.642	0.214	3.970	3.130	1.906	3.618	5.972	4.610	4.271	1.845	1.842	4.883	4.446	4.913	7.793	3.821	5.996	0.951	0.784	0.447	0.967	0.317	0.239	6.496
12565	chr6	108454005	108461580	+	0	NA	intron (NM_010585, intron 44 of 61)	intron (NM_010585, intron 44 of 61)	-31951	NR_106121	102465766		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	4.437	1.830	0.633	2.019	2.437	1.254	7.000	7.529	3.561	4.271	2.569	2.099	6.315	5.940	6.457	9.137	5.806	4.572	nan	1.984	1.091	2.717	2.730	1.437	4.152
6797	chr17	66460215	66461678	+	0	NA	Intergenic	RMER19B|LTR|ERVK	-11196	NM_001114098	68617	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding	7.554	9.632	3.988	5.854	4.902	1.937	8.406	5.486	4.542	7.808	5.979	3.121	5.882	7.811	6.851	8.194	6.439	6.415	4.385	2.818	2.450	4.011	3.568	3.300	8.899
2302	chr11	61886385	61892431	+	0	NA	intron (NM_019921, intron 11 of 14)	B1_Mur1|SINE|Alu	-34316	NM_013881	29869	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	4.789	1.147	0.503	3.878	4.199	2.987	4.344	4.009	4.506	5.881	4.127	2.226	6.040	7.760	5.702	6.732	3.688	5.711	nan	1.037	0.706	1.430	0.981	1.011	4.913
4827	chr14	72691868	72695525	+	0	NA	intron (NM_207636, intron 1 of 25)	intron (NM_207636, intron 1 of 25)	16307	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	3.190	0.581	0.549	1.507	1.581	1.014	2.287	4.343	3.483	4.104	0.798	0.510	2.722	4.735	4.521	6.392	3.451	4.140	2.228	nan	1.399	2.479	3.455	2.735	4.815
9842	chr3	138736911	138739174	+	0	NA	Intergenic	Intergenic	-4166	NR_121195	56224	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding	6.687	12.779	3.959	11.764	3.231	3.219	9.775	5.427	4.245	12.844	5.027	4.110	8.035	7.514	10.034	8.731	5.055	8.813	5.431	1.545	4.987	6.645	3.137	5.114	14.174
3849	chr13	13678462	13685132	+	0	NA	intron (NM_010748, intron 26 of 52)	intron (NM_010748, intron 26 of 52)	91388	NM_010748	17101	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	6.732	4.412	1.834	5.031	3.801	1.877	6.994	6.303	4.163	5.987	2.985	2.290	7.494	8.145	6.499	6.025	4.357	6.284	2.751	2.601	1.775	2.929	2.906	2.438	6.046
2745	chr11	98406267	98411575	+	0	NA	Intergenic	Intergenic	-3563	NM_001003817	13866	Mm.290822	NM_001003817	ENSMUSG00000062312	Erbb2	Erbb-2|HER-2|HER2|Neu|c-erbB2|c-neu|l11Jus8|mKIAA3023	erb-b2 receptor tyrosine kinase 2	protein-coding	1.189	14.899	8.662	1.975	0.706	0.578	0.600	0.566	0.892	1.347	0.432	0.338	0.339	0.558	0.751	0.775	nan	0.939	0.814	nan	1.781	0.428	nan	nan	0.664
14065	chr8	23157466	23158651	+	0	NA	3' UTR (NM_029002, exon 3 of 3)	3' UTR (NM_029002, exon 3 of 3)	4787	NM_029002	74561	Mm.290028	NM_029002	ENSMUSG00000063672	Nkx6-3	9130417I07Rik|Nkx6.3	NK6 homeobox 3	protein-coding	1.830	nan	0.030	1.341	1.185	0.538	1.819	4.574	2.861	2.331	0.626	0.910	3.538	3.061	2.098	3.125	2.611	2.999	0.912	0.621	0.070	nan	1.081	0.525	1.787
8776	chr2	147837310	147878574	+	0	NA	Intergenic	Intergenic	147249	NR_046014	381384	Mm.259809	NR_046014	ENSMUSG00000051986	A530006G24Rik	Gm1003	RIKEN cDNA A530006G24 gene	ncRNA	6.896	0.542	0.425	4.335	3.519	1.930	8.923	8.930	6.870	8.548	0.888	3.624	7.834	9.612	7.915	10.689	8.139	9.948	nan	4.859	3.317	7.317	7.452	5.684	10.539
12303	chr6	71219852	71222866	+	0	NA	intron (NM_009762, intron 5 of 8)	intron (NM_009762, intron 5 of 8)	21471	NM_017399	14080	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	12.536	12.664	4.149	10.302	5.783	3.306	14.314	13.456	6.117	10.684	7.971	3.982	13.425	14.299	14.004	15.709	11.596	11.947	8.200	3.025	3.142	6.771	5.373	4.770	15.544
11332	chr5	72591100	72595998	+	0	NA	Intergenic	Intergenic	-5999	NM_001024147	545758	Mm.332426	NM_001024147	ENSMUSG00000060204	Gm5868	EG545758	predicted gene 5868	protein-coding	5.734	6.451	3.219	5.511	4.030	2.064	4.076	4.556	5.274	5.958	6.657	3.529	5.317	7.175	5.018	5.822	5.080	6.390	1.629	1.666	1.105	nan	1.224	0.619	4.008
13196	chr7	52958857	52965469	+	0	NA	Intergenic	Intergenic	929726	NR_105746	102466619		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	7.973	10.680	3.121	8.351	5.474	2.223	7.223	10.471	5.821	8.059	5.739	3.652	8.419	13.131	8.567	10.449	7.144	7.508	6.449	3.197	2.202	6.945	4.056	3.444	12.105
11707	chr5	124423112	124433458	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-2371	NM_001081203	243272	Mm.23879	NM_001081203	ENSMUSG00000038095	Sbno1	9330180L10Rik|AI849128|AW557836|BC021875|Sbno|mSno1|sno	strawberry notch homolog 1 (Drosophila)	protein-coding	6.580	8.435	3.967	7.606	4.176	2.687	5.416	7.113	5.311	7.325	4.429	2.831	7.613	7.863	7.428	8.045	5.277	8.120	nan	1.705	2.066	3.827	nan	2.633	7.230
8711	chr2	136882094	136884333	+	0	NA	intron (NM_021527, intron 2 of 5)	intron (NM_021527, intron 2 of 5)	-8005	NM_028201	74243	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	3.313	1.147	0.691	3.136	3.596	1.383	6.620	5.451	3.415	2.702	0.996	0.602	9.852	6.628	7.701	8.832	6.961	6.167	0.868	0.412	0.347	0.656	0.459	0.197	4.387
13233	chr7	56807764	56811662	+	0	NA	intron (NM_008074, intron 5 of 9)	intron (NM_008074, intron 5 of 9)	569942	NM_021879	18431	Mm.137052	NM_021879	ENSMUSG00000030450	Oca2	D7H15S12|D7Icr28RN|D7Nic1|p|p<cas>	oculocutaneous albinism II	protein-coding	3.658	1.116	0.300	4.415	3.698	1.483	3.365	1.726	2.617	3.425	8.923	1.989	2.806	3.882	2.562	4.261	3.183	6.009	0.960	0.506	0.476	0.572	0.588	0.400	7.379
12961	chr7	19733615	19735777	+	0	NA	intron (NM_008990, intron 2 of 8)	intron (NM_008990, intron 2 of 8)	14877	NM_008990	19294	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	5.974	7.586	2.077	7.092	3.304	1.268	4.738	7.182	3.733	4.978	3.739	2.330	6.132	6.477	8.015	7.925	4.735	6.084	4.383	2.698	1.450	7.062	3.460	2.781	9.616
2400	chr11	70375345	70378607	+	0	NA	Intergenic	Lx7|LINE|L1	-24945	NM_009660	11687	Mm.4584	NM_009660	ENSMUSG00000018924	Alox15	12-LO|12/15-LO|15-LOX|Alox12l|L-12LO	arachidonate 15-lipoxygenase	protein-coding	9.041	7.471	3.993	7.202	7.069	3.671	8.928	10.559	5.025	9.235	8.427	5.640	6.243	10.055	6.918	8.812	8.048	6.342	4.694	6.067	4.133	3.787	nan	5.853	8.524
2034	chr11	22890289	22891745	+	0	NA	Intergenic	ORR1F|LTR|ERVL-MaLR	-30681	NM_001169114	53625	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	8.992	10.514	2.884	9.225	3.334	1.346	4.511	4.935	4.656	10.230	7.244	3.925	5.803	6.832	9.074	9.708	5.527	8.895	5.072	1.929	1.308	5.297	2.545	1.956	10.924
4405	chr13	111026755	111028925	+	0	NA	Intergenic	Intergenic	-123994	NR_131194	102636142	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	2.353	nan	0.621	2.641	2.076	0.957	3.312	1.322	3.103	3.523	0.384	0.230	4.037	4.987	4.437	4.658	1.328	4.970	1.325	0.400	0.339	nan	0.761	0.815	2.817
13589	chr7	117814126	117816331	+	0	NA	Intergenic	Intergenic	300919	NM_170669	267019	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	4.847	1.300	0.466	1.772	0.898	0.388	1.564	4.034	1.246	1.357	6.333	3.732	1.895	1.344	1.087	2.728	1.994	2.149	1.840	0.847	0.856	1.864	0.812	0.566	4.384
2029	chr11	22528669	22532143	+	0	NA	Intergenic	Lx2|LINE|L1	18123	NM_153596	103765	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	6.218	nan	1.032	6.817	4.532	2.738	3.064	4.135	3.419	4.308	4.208	2.849	3.952	6.774	3.967	5.010	3.247	nan	1.666	1.776	1.821	3.706	2.029	1.662	5.458
3552	chr12	85525816	85531251	+	0	NA	Intergenic	Lx8|LINE|L1	54632	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	5.153	6.583	1.831	5.770	2.946	1.452	3.087	4.100	2.819	3.524	2.495	1.656	3.991	5.780	4.943	5.079	3.637	6.549	1.310	1.095	0.867	2.465	0.981	0.583	9.716
11975	chr5	149506891	149510299	+	0	NA	intron (NR_045423, intron 1 of 4)	intron (NR_045423, intron 1 of 4)	-20084	NM_029440	381693	Mm.136919	NM_029440	ENSMUSG00000029658	Wdr95	4930434E21Rik	WD40 repeat domain 95	protein-coding	5.336	1.537	0.966	3.090	3.977	2.090	4.538	4.837	nan	4.382	3.388	1.520	5.651	6.116	5.480	4.230	3.577	4.556	1.412	0.997	0.956	1.399	0.975	0.653	4.175
5671	chr15	100240558	100242331	+	0	NA	intron (NM_007497, intron 2 of 6)	B1_Mus2|SINE|Alu	13585	NM_007497	11908	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	2.201	0.737	0.511	2.307	2.093	1.171	3.645	8.851	2.205	1.725	1.309	0.992	7.488	6.731	5.456	3.180	5.425	2.163	0.923	0.894	0.155	0.864	0.743	0.215	3.770
8153	chr2	33070237	33076018	+	0	NA	intron (NM_178888, intron 2 of 28)	intron (NM_178888, intron 2 of 28)	14077	NM_178888	99326	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	2.320	2.637	0.426	3.233	0.758	0.514	2.329	nan	2.913	nan	2.040	1.340	3.262	3.174	3.908	7.478	3.308	3.853	1.842	0.606	0.625	3.821	0.728	0.529	4.359
2723	chr11	97436077	97440082	+	0	NA	Intergenic	Intergenic	-12081	NM_021493	58996	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	3.904	nan	0.228	3.488	2.131	1.423	4.201	5.197	2.082	4.274	0.786	0.645	3.348	4.327	5.050	5.824	3.862	4.770	0.831	nan	1.598	2.257	nan	nan	6.547
10344	chr4	106591685	106594203	+	0	NA	intron (NM_183182, intron 9 of 9)	ID4_|SINE|ID	24294	NM_183182	242602	Mm.235591	NM_183182	ENSMUSG00000054362	Lexm	-	lymphocyte expansion molecule	protein-coding	0.978	3.270	1.719	0.806	0.671	0.326	1.707	nan	1.079	1.032	0.703	0.321	1.140	1.635	1.533	1.106	0.948	nan	4.582	5.015	1.596	5.884	2.055	1.025	1.218
4218	chr13	63286355	63290472	+	0	NA	TTS (NR_045794)	TTS (NR_045794)	8734	NR_045794	100504114	Mm.437070	NR_045794	ENSMUSG00000097242	Gm16907	-	predicted gene, 16907	ncRNA	4.576	1.727	1.176	3.566	3.913	1.915	4.340	4.150	4.236	4.255	5.899	2.262	4.609	5.552	5.181	6.889	3.580	5.464	2.339	1.631	1.690	3.397	2.611	1.751	6.367
13628	chr7	119827969	119834012	+	0	NA	intron (NM_001004187, intron 10 of 12)	intron (NM_001004187, intron 10 of 12)	36803	NM_001004187	434234	Mm.38237	NM_028129	ENSMUSG00000030924	2610020H08Rik	-	RIKEN cDNA 2610020H08 gene	protein-coding	1.920	0.555	0.342	2.549	2.596	1.299	2.148	3.489	2.292	2.311	3.051	2.013	3.053	nan	3.281	2.968	2.047	2.757	3.665	1.476	0.794	4.513	1.629	1.257	2.335
775	chr1	158521935	158524995	+	0	NA	intron (NM_007495, intron 8 of 22)	IMPB_01|Satellite|Satellite	17840	NR_030441	735253		NR_030441	ENSMUSG00000070103	Mir488	Mirn488|mir-488|mmu-mir-488	microRNA 488	ncRNA	1.799	0.864	0.768	0.818	1.635	1.013	1.501	1.382	nan	1.134	4.605	3.138	1.499	1.064	0.988	1.470	1.207	1.455	nan	0.586	0.921	0.341	nan	1.149	0.814
5668	chr15	100148946	100152441	+	0	NA	intron (NR_037311, intron 1 of 3)	intron (NR_037311, intron 1 of 3)	-3703	NM_172819	239667	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	9.569	1.252	0.793	7.363	4.881	4.289	9.930	11.892	6.791	7.671	2.658	1.460	15.085	12.353	9.174	9.965	10.185	8.406	2.771	2.252	2.449	5.190	4.089	4.371	10.803
20	chr1	10224822	10227516	+	0	NA	intron (NM_001102430, intron 1 of 37)	Lx3_Mus|LINE|L1	6501	NM_001102430	211673	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	4.630	0.776	0.087	1.224	1.205	0.315	3.171	3.412	2.155	1.816	1.258	1.509	4.273	3.320	2.994	4.239	4.089	3.391	1.795	1.534	0.390	1.196	2.186	0.794	2.017
9808	chr3	132601510	132604868	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-27002	NM_001270430	433653		NM_001270430	ENSMUSG00000091721	Gimd1	EG433653|Gm5549	GIMAP family P-loop NTPase domain containing 1	protein-coding	5.716	0.457	0.055	5.014	4.570	2.136	3.128	3.416	4.263	6.476	0.817	0.423	5.760	8.319	3.179	3.422	nan	7.014	0.602	0.604	0.158	0.796	1.111	0.493	4.409
14328	chr8	74091011	74098638	+	0	NA	Intergenic	L1_Mur1|LINE|L1	-741284	NM_010687	16795	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	5.483	nan	1.348	3.580	2.878	1.596	5.038	8.474	nan	3.917	4.615	2.322	5.301	5.915	5.150	nan	5.951	3.106	2.800	4.071	2.693	nan	3.489	2.577	7.457
15741	chrX	70917642	70919297	+	0	NA	Intergenic	Intergenic	-131787	NM_001256048	333639	Mm.371730	NM_001081354	ENSMUSG00000059401	Mamld1	G630014P10Rik	mastermind-like domain containing 1	protein-coding	3.210	2.217	0.551	4.664	3.063	2.133	3.252	5.666	2.107	7.744	3.812	1.946	3.025	5.547	4.226	5.518	2.958	4.488	2.502	0.928	2.421	3.678	1.299	3.430	7.212
1983	chr11	11778930	11791263	+	0	NA	Intergenic	MER3|DNA|hAT-Charlie	23866	NM_021891	60530	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	nan	1.089	0.473	0.724	0.202	0.069	1.734	0.960	0.846	0.724	0.286	0.238	1.474	0.940	1.826	2.937	1.839	1.381	6.820	nan	1.795	7.479	4.675	3.072	1.832
14898	chr9	21266575	21269798	+	0	NA	intron (NM_153583, intron 3 of 9)	intron (NM_153583, intron 3 of 9)	2901	NM_153583	235040	Mm.440165	NM_153583	ENSMUSG00000002820	Atg4d	9830134P12Rik|APG4-D|Apg4d|Atg4dl|Autl4	autophagy related 4D, cysteine peptidase	protein-coding	4.244	3.166	0.923	4.916	3.306	2.219	2.772	3.539	3.703	3.599	2.745	2.189	2.601	3.383	4.098	4.045	1.556	4.699	5.084	2.422	4.259	5.639	3.363	3.960	5.602
11152	chr5	34124271	34126092	+	0	NA	intron (NM_181857, intron 4 of 24)	intron (NM_181857, intron 4 of 24)	6441	NR_040703	75357	Mm.410806	NR_040703	ENSMUSG00000106902	4930557J02Rik	-	RIKEN cDNA 4930557J02 gene	ncRNA	4.465	8.983	1.514	8.572	1.968	1.761	3.750	4.495	3.805	7.618	3.113	2.255	3.483	5.830	7.536	8.096	nan	7.261	4.138	1.154	1.422	5.018	2.068	3.149	10.713
4304	chr13	97438887	97442874	+	0	NA	intron (NR_110432, intron 1 of 1)	intron (NR_110432, intron 1 of 1)	5910	NR_110432	100039691	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	ENSMUSG00000078952|Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	4.803	7.789	4.046	6.341	4.091	2.307	4.643	5.451	3.764	5.791	3.750	3.376	4.406	6.430	7.752	5.760	nan	nan	3.370	2.401	1.603	3.715	2.883	2.418	7.310
4180	chr13	57841177	57845204	+	0	NA	intron (NM_001166464, intron 2 of 10)	intron (NM_001166464, intron 2 of 10)	65142	NM_009262	20745	Mm.379020	NM_009262	ENSMUSG00000056222	Spock1	Spock|Ticn1|testican	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	protein-coding	nan	0.211	0.280	0.249	0.095	0.030	0.174	0.282	0.324	0.293	0.177	0.126	0.055	nan	0.117	nan	0.218	nan	7.130	2.622	1.855	5.515	4.145	2.955	nan
4139	chr13	52922249	52926131	+	0	NA	intron (NM_016709, intron 1 of 9)	intron (NM_016709, intron 1 of 9)	5487	NM_016709	11992	Mm.252034	NM_016709	ENSMUSG00000021460	Auh	C77140|W91705	AU RNA binding protein/enoyl-coenzyme A hydratase	protein-coding	6.311	1.912	1.367	4.364	5.723	3.771	4.773	6.202	5.920	7.675	4.036	3.009	5.950	8.336	6.051	5.850	3.988	6.864	1.463	nan	1.414	2.052	1.645	1.664	5.175
468	chr1	95061394	95063817	+	0	NA	Intergenic	ORR1D2|LTR|ERVL-MaLR	-251023	NM_026321	67698	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	3.795	nan	0.240	2.389	1.743	0.886	3.405	4.656	2.346	2.616	4.039	1.485	3.884	4.804	2.878	6.658	1.982	3.604	nan	0.814	0.369	nan	0.464	0.205	nan
9012	chr2	166882838	166890698	+	0	NA	intron (NM_001085495, intron 35 of 38)	intron (NM_001085495, intron 35 of 38)	-19328	NM_023565	110750	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	10.609	6.857	4.246	5.813	7.149	4.552	8.764	9.590	4.648	6.672	5.387	3.230	7.071	8.242	6.619	9.029	10.353	6.379	nan	3.937	3.232	2.801	4.816	3.905	9.933
3030	chr11	117135335	117139600	+	0	NA	intron (NM_001166507, intron 2 of 16)	B1_Mur4|SINE|Alu	22295	NM_001166506	74136	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	3.356	nan	0.765	3.602	2.425	1.443	2.758	4.111	1.722	nan	2.275	2.159	1.248	2.306	2.254	2.016	1.467	nan	1.248	nan	1.496	1.341	0.734	0.396	2.396
12473	chr6	92800221	92802597	+	0	NA	intron (NM_175314, intron 21 of 29)	B3A|SINE|B2	-95225	NM_001081146	243548	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	3.475	1.030	0.328	nan	2.606	0.683	3.868	2.107	2.066	1.847	0.601	0.591	2.747	3.399	2.440	3.976	3.027	2.541	nan	0.931	0.358	0.976	0.568	0.260	2.350
7247	chr18	55059746	55062799	+	0	NA	Intergenic	Intergenic	-71092	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	8.810	4.824	2.915	5.066	4.974	2.512	7.742	4.791	5.046	5.501	5.262	5.532	9.338	7.435	6.047	8.043	7.792	6.888	4.200	2.409	1.319	2.956	2.821	2.021	7.389
78	chr1	34199265	34200682	+	0	NA	intron (NM_001276764, intron 46 of 102)	intron (NM_001276764, intron 46 of 102)	39643	NM_010081	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	1.729	0.625	0.461	1.700	1.418	0.978	0.648	0.790	1.960	2.071	5.211	2.512	1.495	1.722	1.018	1.836	0.722	1.844	0.850	1.049	0.623	0.690	0.604	0.776	1.892
15474	chr9	107188915	107192069	+	0	NA	intron (NM_153413, intron 1 of 52)	intron (NM_153413, intron 1 of 52)	-2315	NR_102273	100417434		NR_102273	ENSMUSG00000092125	AA543401	Mycs-like	myc-like oncogene, s-myc protein pseudogene	pseudo	4.991	6.826	1.728	6.184	1.825	0.886	2.866	5.061	nan	4.579	7.463	2.199	3.746	5.186	4.490	6.138	2.821	5.636	1.869	0.961	0.579	2.057	0.733	0.520	9.514
14853	chr9	13268694	13270530	+	0	NA	intron (NM_025534, intron 6 of 8)	L1_Mus2|LINE|L1	22656	NM_025534	66396	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	5.573	12.488	4.230	5.266	2.897	1.445	4.142	4.425	4.952	4.447	4.296	1.989	3.910	4.470	4.128	4.589	2.395	5.297	1.122	1.921	0.824	1.145	0.524	0.310	4.316
6612	chr17	36136555	36139920	+	0	NA	Intergenic	Intergenic	-6781	NR_033517	675325	Mm.75890	NR_033517	ENSMUSG00000038311	2410017I17Rik	-	RIKEN cDNA 2410017I17 gene	ncRNA	3.250	7.521	4.871	1.355	3.670	2.961	2.084	1.825	1.452	1.855	4.930	1.393	1.830	3.603	1.446	1.594	1.534	1.642	0.911	1.588	2.320	0.657	1.154	1.162	2.051
5571	chr15	92426969	92430712	+	0	NA	intron (NM_001164593, intron 3 of 9)	ORR1B2|LTR|ERVL-MaLR	32030	NM_001164593	239618	Mm.309826	NM_001164593	ENSMUSG00000036218	Pdzrn4	1110017D07Rik|LNX4|SAMCAP3L|mKIAA3027	PDZ domain containing RING finger 4	protein-coding	nan	1.057	0.355	nan	0.275	0.067	nan	nan	nan	0.707	0.949	0.311	0.184	0.306	nan	nan	nan	nan	nan	2.889	1.896	nan	2.930	1.841	nan
13110	chr7	31622457	31630315	+	0	NA	Intergenic	Intergenic	79368	NM_001198871	100043836	Mm.296883	NM_001198871	ENSMUSG00000094053	Scgb2b7	Abpbg7|Gm4684	secretoglobin, family 2B, member 7	protein-coding	1.024	9.105	5.937	0.857	0.760	0.313	0.805	0.839	0.667	0.723	1.081	0.792	0.393	0.612	0.733	0.813	0.646	0.799	0.855	1.469	1.099	1.279	0.950	0.572	0.900
413	chr1	90037622	90040201	+	0	NA	Intergenic	Intergenic	-24334	NM_139152	208372	Mm.215164	NM_139152	ENSMUSG00000067081	Asb18	Asb-18	ankyrin repeat and SOCS box-containing 18	protein-coding	4.864	0.342	0.524	1.174	1.018	0.444	2.660	3.463	1.994	1.604	2.141	1.575	3.643	3.387	2.971	4.163	3.655	2.217	0.422	0.863	0.312	nan	0.439	0.368	1.846
294	chr1	73967027	73986354	+	0	NA	intron (NM_027884, intron 18 of 34)	intron (NM_027884, intron 18 of 34)	-112224	NR_045311	109198	Mm.359721	NR_045311	ENSMUSG00000100301	6030407O03Rik	-	RIKEN cDNA 6030407O03 gene	ncRNA	8.701	2.267	0.749	6.137	3.517	1.793	5.625	5.368	5.250	6.843	1.072	0.991	5.625	7.512	5.816	10.676	5.072	nan	nan	nan	0.698	1.902	nan	0.494	nan
764	chr1	156916166	156925188	+	0	NA	intron (NR_027640, intron 1 of 19)	RMER10A|LTR|ERVL	18710	NM_001159966	78255	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	9.091	1.992	0.819	4.103	6.185	3.709	5.297	5.918	nan	4.655	7.771	3.790	5.667	7.921	5.790	nan	5.500	5.648	nan	1.511	1.064	1.577	nan	1.871	7.109
11289	chr5	66153709	66157720	+	0	NA	Intergenic	Intergenic	-3760	NM_001127382	245945	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	9.497	9.490	3.654	9.784	6.862	5.059	11.293	8.722	6.737	16.316	7.112	4.684	9.211	11.817	10.833	10.881	9.406	9.596	8.045	4.295	6.172	6.940	7.120	10.067	12.920
7575	chr19	10650888	10653529	+	0	NA	intron (NM_027913, intron 11 of 19)	(TTTC)n|Simple_repeat|Simple_repeat	-4155	NR_045316	75096	Mm.399287	NR_045316		4930524O05Rik	-	RIKEN cDNA 4930524O05 gene	ncRNA	8.496	11.012	3.605	8.926	2.646	1.193	7.792	6.537	4.760	5.819	5.009	2.245	4.497	7.427	7.593	7.758	5.530	7.771	2.932	2.748	1.464	5.358	3.439	2.175	11.634
2075	chr11	32550274	32551713	+	0	NA	intron (NM_009288, intron 1 of 18)	ID4|SINE|ID	17727	NM_009288	20868	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	4.052	3.736	2.858	2.764	4.509	2.155	4.004	4.751	2.693	3.107	3.134	3.374	3.994	4.291	4.113	3.630	2.940	4.368	1.522	2.212	0.751	2.170	0.963	1.154	3.118
10327	chr4	102306482	102313323	+	0	NA	intron (NM_019840, intron 1 of 14)	MLT1E2|LTR|ERVL-MaLR	54963	NM_019840	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	6.507	nan	0.572	4.324	1.714	0.610	1.859	4.579	4.357	5.930	1.896	1.818	3.490	3.961	3.988	2.356	2.564	4.927	0.589	1.400	0.827	nan	0.509	0.355	4.901
9109	chr2	180190227	180192083	+	0	NA	intron (NM_001081171, intron 36 of 78)	intron (NM_001081171, intron 36 of 78)	-11332	NR_105972	102466785		NR_105972	ENSMUSG00000098735	Mir7005	Gm27835|mmu-mir-7005	microRNA 7005	ncRNA	2.608	5.074	1.133	3.064	1.216	1.041	1.095	1.279	1.697	2.296	3.105	2.299	1.148	1.895	2.131	2.295	1.347	2.057	6.181	3.210	4.563	8.302	4.823	4.425	2.969
9697	chr3	108293283	108296296	+	0	NA	intron (NM_001271599, intron 1 of 20)	L2c|LINE|L2	10725	NM_019972	20661	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	3.155	1.368	0.917	1.875	1.731	1.465	3.336	3.333	2.216	3.283	0.950	0.834	5.022	5.853	nan	2.991	4.107	2.250	3.594	3.478	2.406	2.725	6.611	5.042	2.646
4582	chr14	31992972	31999797	+	0	NA	Intergenic	B3|SINE|B2	-32719	NM_030166	78754	Mm.40681	NM_030166	ENSMUSG00000021903	Galnt15	4631401E18Rik|Galntl2|mpp-GalNAc-T15	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 15	protein-coding	3.526	1.428	0.626	2.723	1.147	0.606	1.887	6.165	1.985	2.337	1.980	0.914	2.151	2.680	1.952	2.259	nan	2.297	0.926	0.812	0.818	nan	0.714	0.455	3.635
1981	chr11	11754266	11755946	+	0	NA	intron (NM_001301866, intron 4 of 5)	intron (NM_001301866, intron 4 of 5)	53856	NM_021891	60530	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	1.393	1.037	0.827	1.136	0.850	0.721	1.400	1.074	0.869	0.838	0.412	0.440	0.512	0.718	1.051	2.199	1.833	1.435	8.108	5.748	6.694	6.797	11.985	10.558	1.237
7634	chr19	21733757	21740385	+	0	NA	Intergenic	Intergenic	-41269	NM_001033759	83921	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	3.898	0.932	0.945	2.703	3.662	2.382	3.483	5.225	3.688	3.647	1.181	0.858	3.528	4.285	3.620	4.032	5.820	5.462	0.564	0.978	0.652	0.594	0.759	0.624	2.818
12021	chr6	3345484	3349558	+	0	NA	Intergenic	Intergenic	52050	NM_010156	209086	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	5.950	3.670	2.261	3.492	2.590	1.326	6.737	4.225	4.023	3.854	2.300	1.835	6.736	5.844	5.175	nan	7.299	6.086	2.469	1.729	1.218	1.055	1.323	0.820	nan
8754	chr2	146109774	146112713	+	0	NA	Intergenic	Intergenic	-110754	NM_016889	53626	Mm.379070	NM_016889	ENSMUSG00000068154	Insm1	IA-1	insulinoma-associated 1	protein-coding	0.675	0.467	0.757	0.413	0.800	0.697	0.838	1.827	0.566	0.419	0.242	0.650	0.390	0.661	0.435	0.702	0.983	0.619	3.872	3.296	3.124	2.720	6.810	6.400	0.444
3559	chr12	85748182	85750485	+	0	NA	intron (NM_145447, intron 1 of 9)	intron (NM_145447, intron 1 of 9)	2794	NM_145447	217721	Mm.301076	NM_145447	ENSMUSG00000034258	Mfsd7c	CCT|Flvcr2	major facilitator superfamily domain containing 7C	protein-coding	5.062	7.729	1.961	5.614	2.719	2.154	4.507	6.467	2.915	6.012	3.658	1.769	4.392	6.178	6.331	7.813	5.155	4.959	4.994	2.916	3.262	6.158	3.368	4.081	9.413
2522	chr11	79118547	79121165	+	0	NA	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	26498	NM_013571	16706	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb	kinase suppressor of ras 1	protein-coding	9.677	1.675	1.015	6.204	4.446	2.296	6.971	4.052	4.001	5.247	5.457	3.233	3.830	6.432	4.324	4.969	5.325	3.897	1.383	2.383	nan	1.439	1.755	1.314	7.008
11754	chr5	130519859	130520766	+	0	NA	intron (NM_021371, intron 2 of 5)	B1_Mus1|SINE|Alu	71520	NM_021371	140904	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	2.206	2.743	0.695	2.629	0.417	0.192	2.522	4.608	1.978	2.455	0.211	0.729	2.450	3.792	1.996	3.596	2.161	1.739	0.853	0.166	0.135	1.296	nan	0.379	3.245
15681	chrX	12647541	12650571	+	0	NA	Intergenic	Intergenic	-2827	NM_001101484	245347	Mm.327568	NM_001101484		Gm4984	AI428901|EG245347	predicted pseudogene 4984	protein-coding	7.029	10.773	2.986	8.593	3.843	2.877	5.388	6.172	3.994	10.944	5.654	2.891	5.273	8.103	6.435	8.466	4.406	6.803	4.392	2.522	3.332	5.326	3.109	4.908	12.292
14703	chr8	123602529	123614952	+	0	NA	Intergenic	Intergenic	-42653	NR_046152	100861499		NR_046152	ENSMUSG00000096300	Gm25212	Rn5s28	predicted gene, 25212	rRNA	3.284	nan	0.355	9.484	1.467	0.793	nan	nan	2.293	3.525	1.024	0.659	0.936	1.696	nan	3.118	1.254	nan	nan	0.991	0.992	nan	0.980	nan	nan
10083	chr4	53120275	53122612	+	0	NA	intron (NM_013454, intron 5 of 49)	intron (NM_013454, intron 5 of 49)	38452	NM_013454	11303	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	3.526	nan	0.223	3.498	0.760	0.454	nan	2.633	2.368	2.366	1.144	0.830	2.403	3.225	2.337	3.833	1.598	2.735	nan	0.878	0.262	1.412	0.482	0.189	3.147
14040	chr8	13348090	13358914	+	0	NA	intron (NM_001291766, intron 2 of 10)	intron (NM_001291766, intron 2 of 10)	14698	NM_009361	21781	Mm.925	NM_009361	ENSMUSG00000038482	Tfdp1	Dp1|Drtf1	transcription factor Dp 1	protein-coding	0.734	1.430	0.579	0.729	0.413	0.288	0.605	1.125	0.557	0.567	0.972	0.426	0.440	0.595	0.688	nan	0.775	0.972	3.930	3.236	2.051	7.246	3.205	1.993	0.974
5922	chr16	23977056	23996299	+	0	NA	intron (NM_009744, intron 1 of 9)	intron (NM_009744, intron 1 of 9)	1935	NM_009744	12053	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	11.991	8.387	5.831	8.018	8.909	5.791	8.282	12.713	6.520	9.307	6.231	5.038	9.009	12.181	7.587	nan	9.735	8.016	2.764	3.713	2.936	3.651	nan	3.349	10.683
13977	chr8	8656657	8661992	+	0	NA	intron (NM_010111, intron 1 of 4)	intron (NM_010111, intron 1 of 4)	1449	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	5.895	2.285	0.681	6.636	0.942	0.528	7.230	8.365	3.604	5.440	2.479	3.313	7.134	6.059	11.173	9.510	6.092	8.180	1.455	0.842	1.062	3.449	0.604	1.265	12.027
13425	chr7	96474329	96479335	+	0	NA	intron (NM_001310760, intron 3 of 32)	intron (NM_001310760, intron 3 of 32)	-134868	NR_046043	670727	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	OTTMUSG00000021245	predicted gene 15412	ncRNA	3.547	0.598	0.424	1.652	2.369	1.435	4.419	6.671	2.814	3.043	0.609	1.030	5.497	4.439	4.179	3.108	4.478	3.913	nan	0.633	0.643	0.493	0.734	0.774	1.755
8649	chr2	128121746	128125704	+	0	NA	3' UTR (NM_028765, exon 18 of 18)	3' UTR (NM_028765, exon 18 of 18)	-2313	NM_207681	12125	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	4.203	1.406	0.850	2.921	2.551	2.069	5.361	3.968	3.262	2.803	1.738	0.898	3.816	4.088	4.907	nan	4.085	4.906	nan	0.820	0.535	0.948	0.509	0.400	6.280
10949	chr4	151175541	151182464	+	0	NA	intron (NM_001081557, intron 6 of 23)	RLTR20A4|LTR|ERVK	89432	NM_001308446	105704528	Mm.415128	NM_001308446	ENSMUSG00000078491	Gm13090	OTTMUSG00000010356	predicted gene 13090	protein-coding	3.164	nan	1.534	2.058	1.386	0.716	4.370	2.513	2.919	2.770	0.450	0.538	4.018	5.156	4.763	5.327	3.375	4.822	1.452	0.902	0.514	1.396	1.118	0.887	3.159
15881	chrX	166298019	166302400	+	0	NA	intron (NM_023122, intron 1 of 6)	intron (NM_023122, intron 1 of 6)	-44344	NM_001177958	14758	Mm.222320	NM_023122	ENSMUSG00000031342	Gpm6b	AI593561|Gpm6|M6B	glycoprotein m6b	protein-coding	3.096	0.495	0.391	1.903	2.665	1.396	1.740	2.363	2.003	2.994	1.075	1.651	2.742	2.353	1.992	4.879	2.356	2.703	0.906	0.802	0.850	0.492	0.526	0.558	1.198
10787	chr4	138764001	138766997	+	0	NA	Intergenic	Intergenic	-7901	NM_012045	26971	Mm.331989	NM_012045	ENSMUSG00000028749	Pla2g2f	-	phospholipase A2, group IIF	protein-coding	nan	5.353	1.387	6.309	4.990	3.293	3.240	1.797	nan	3.210	2.109	1.138	1.739	4.735	3.206	2.987	1.299	nan	1.590	1.583	0.814	2.065	nan	0.645	4.295
7777	chr19	42066144	42068684	+	0	NA	intron (NM_026152, intron 6 of 6)	intron (NM_026152, intron 6 of 6)	15186	NM_025752	66765	Mm.440412	NM_025752	ENSMUSG00000090369	4933411K16Rik	-	RIKEN cDNA 4933411K16 gene	protein-coding	4.301	1.837	1.077	3.817	4.493	2.851	3.206	5.746	3.752	4.041	6.637	2.844	2.595	4.847	4.496	3.582	4.700	3.858	1.371	1.639	1.048	1.835	1.553	1.504	5.495
6220	chr16	92673475	92677626	+	0	NA	intron (NM_001111023, intron 2 of 5)	intron (NM_001111023, intron 2 of 5)	21779	NM_001111023	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	6.687	nan	1.280	5.988	7.058	4.231	7.179	7.348	6.191	6.922	4.802	2.083	8.992	9.818	7.430	10.865	5.019	8.963	0.863	1.051	1.000	nan	0.775	0.744	9.775
9973	chr4	34497229	34499970	+	0	NA	Intergenic	Intergenic	-52016	NM_001007589	433693	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	8.249	8.812	2.751	8.027	4.941	3.853	6.741	7.065	5.336	10.841	5.661	3.319	6.742	8.090	7.240	8.923	5.045	8.381	5.567	3.127	2.690	3.977	3.167	4.006	11.982
9930	chr4	10845457	10846711	+	0	NA	Intergenic	B4A|SINE|B4	-28414	NM_026005	67157	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	3.841	4.749	0.785	2.345	0.673	0.405	2.339	3.973	2.376	2.950	0.876	1.191	1.828	3.755	3.026	3.475	1.598	2.548	3.006	nan	0.438	2.120	1.267	1.305	4.645
13684	chr7	125629340	125641671	+	0	NA	Intergenic	Intergenic	32076	NM_021887	60504	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	5.139	1.819	0.541	6.308	3.292	1.601	6.126	9.011	4.667	5.522	3.695	3.638	5.964	5.622	nan	6.147	4.058	6.010	1.233	1.030	0.911	1.533	0.919	0.828	5.102
8519	chr2	112105814	112110367	+	0	NA	Intergenic	L1_Mus2|LINE|L1	-15391	NM_146450	258442	Mm.377505	NM_146450	ENSMUSG00000074945	Olfr1314	MOR245-2	olfactory receptor 1314	protein-coding	4.846	10.371	5.215	6.307	2.575	1.959	2.408	3.034	3.769	5.009	3.397	1.786	3.293	3.693	3.869	4.884	3.845	4.551	3.599	2.957	2.703	nan	2.436	2.552	5.697
15723	chrX	45785474	45789420	+	0	NA	Intergenic	Intergenic	541464	NR_045440	75133	Mm.417818	NR_045440	ENSMUSG00000085157	4930515L19Rik	-	RIKEN cDNA 4930515L19 gene	ncRNA	1.665	8.175	3.009	1.984	0.844	0.237	0.756	1.312	1.301	1.446	1.029	0.783	0.613	1.014	1.031	1.224	0.687	1.481	1.057	0.982	0.629	0.929	0.990	0.504	1.427
2583	chr11	86648478	86655115	+	0	NA	intron (NM_029478, intron 5 of 11)	B2_Mm2|SINE|B2	-4275	NR_106195	102465902		NR_106195	ENSMUSG00000099324	Mir8115	Gm28012|mmu-mir-8115	microRNA 8115	ncRNA	5.784	1.230	0.815	nan	3.596	2.772	5.847	6.275	4.965	4.729	2.915	4.081	5.019	6.403	6.417	5.322	3.903	5.714	1.581	1.112	0.848	nan	1.268	0.963	nan
10923	chr4	149988934	149992333	+	0	NA	intron (NM_001291004, intron 3 of 4)	intron (NM_001291004, intron 3 of 4)	12603	NM_001291004	100198	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	2.306	nan	0.411	1.523	1.839	0.944	1.476	2.555	1.642	3.914	0.819	0.590	2.512	5.093	2.446	3.083	2.470	2.087	2.433	1.130	0.975	3.836	0.760	0.614	5.904
2589	chr11	86818042	86821773	+	0	NA	intron (NR_106195, intron 2 of 8)	intron (NR_106195, intron 2 of 8)	-12247	NM_026191	67487	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	3.529	1.108	1.175	3.001	3.156	2.492	2.151	1.675	3.210	2.256	3.764	3.488	1.477	2.131	1.875	2.065	2.066	2.734	3.253	4.235	4.481	3.181	3.618	3.641	1.947
9401	chr3	84656583	84659463	+	0	NA	Intergenic	Intergenic	-8169	NM_177260	320782	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	2.865	1.291	0.678	3.792	0.805	0.491	1.081	2.225	2.680	1.794	1.292	1.669	1.033	1.796	1.596	1.780	1.169	3.223	nan	1.048	0.656	0.626	0.350	0.341	1.240
2814	chr11	101524292	101536764	+	0	NA	intron (NM_009764, intron 7 of 22)	PB1D7|SINE|Alu	21427	NM_009764	12189	Mm.244975	NM_009764	ENSMUSG00000017146	Brca1	-	breast cancer 1, early onset	protein-coding	5.942	nan	0.893	5.669	2.614	2.116	4.461	7.457	3.605	4.130	1.637	1.354	4.603	6.199	5.593	5.933	5.889	6.190	1.082	nan	1.565	1.582	nan	nan	6.462
710	chr1	140036977	140043822	+	0	NA	Intergenic	L1Md_F2|LINE|L1	143012	NM_009888	12628	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	1.971	7.237	3.262	nan	0.969	0.443	0.400	0.603	1.186	1.197	0.680	0.454	0.561	nan	0.974	nan	1.167	1.530	0.626	0.617	0.350	0.596	0.209	0.222	nan
7603	chr19	16212121	16217432	+	0	NA	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	50678	NR_033228	595139	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	5.224	1.906	0.889	5.412	2.682	0.985	2.325	2.439	4.064	3.648	2.641	1.011	2.388	3.564	2.981	3.401	3.006	4.997	1.027	1.433	0.411	1.528	0.851	0.556	3.435
7087	chr18	25803826	25807900	+	0	NA	Intergenic	Intergenic	-51880	NM_001174074	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.491	0.624	0.326	0.217	0.219	0.120	1.224	1.825	0.477	0.433	0.500	0.763	0.571	0.404	0.381	nan	0.727	0.804	nan	2.062	1.209	nan	1.422	1.177	1.060
14859	chr9	13890796	13898210	+	0	NA	Intergenic	Intergenic	66776	NM_176836	72826	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	1.469	11.583	4.548	2.028	0.917	0.303	0.693	0.776	1.394	1.676	1.330	0.661	0.680	1.141	1.616	1.634	0.772	2.488	1.620	1.337	0.591	1.952	1.115	0.659	2.053
15486	chr9	107520178	107522510	+	0	NA	intron (NM_001174047, intron 23 of 38)	intron (NM_001174047, intron 23 of 38)	-12601	NM_019704	56395	Mm.260153	NM_019704	ENSMUSG00000010045	Tmem115	C78915|Pl6|Pp6	transmembrane protein 115	protein-coding	3.787	2.463	0.564	6.928	2.160	1.031	2.706	3.648	nan	2.620	3.939	2.578	1.763	3.517	2.687	3.314	0.779	3.219	3.033	1.060	0.656	1.204	0.823	0.533	3.803
5105	chr15	34419363	34425895	+	0	NA	intron (NM_016762, intron 11 of 18)	L1MC3|LINE|L1	20596	NM_009083	19946	Mm.358632	NM_009083	ENSMUSG00000058600	Rpl30	-	ribosomal protein L30	protein-coding	4.227	2.564	1.183	1.651	0.719	0.433	5.619	8.331	1.859	1.797	1.002	1.109	4.749	3.354	4.971	3.988	3.953	3.088	1.101	0.731	0.536	nan	0.634	0.686	nan
13227	chr7	56596846	56599380	+	0	NA	Intergenic	Intergenic	358342	NM_021879	18431	Mm.137052	NM_021879	ENSMUSG00000030450	Oca2	D7H15S12|D7Icr28RN|D7Nic1|p|p<cas>	oculocutaneous albinism II	protein-coding	2.412	1.930	0.978	3.625	4.016	1.874	3.244	2.583	2.324	4.698	2.029	1.527	4.259	4.174	3.435	4.798	1.890	3.838	1.329	1.235	0.484	1.411	1.218	1.112	3.934
112	chr1	37686589	37689434	+	0	NA	intron (NM_028096, intron 1 of 9)	intron (NM_028096, intron 1 of 9)	31800	NM_028096	72097	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	4.674	1.465	0.684	3.184	1.410	0.536	2.878	5.144	3.139	3.237	7.730	3.550	5.219	4.541	2.504	3.077	2.499	4.142	2.634	1.309	1.081	6.264	1.792	1.161	2.787
5935	chr16	24467461	24474254	+	0	NA	intron (NM_001145952, intron 2 of 11)	intron (NM_001145952, intron 2 of 11)	22766	NM_001145952	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	2.023	8.350	5.228	1.372	1.529	0.398	1.798	4.277	1.972	1.890	1.001	1.277	nan	3.081	2.642	nan	1.535	3.467	1.597	1.094	0.739	1.775	nan	0.798	2.107
13603	chr7	118299670	118301750	+	0	NA	Intergenic	Intergenic	56803	NR_027879	67745	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	4.253	1.879	0.489	2.378	2.433	0.894	8.297	7.043	1.901	2.426	9.190	3.768	3.441	4.327	4.669	4.157	3.493	2.880	3.551	3.401	3.193	4.763	2.520	2.335	4.480
9423	chr3	87308054	87309874	+	0	NA	Intergenic	MTE2b|LTR|ERVL-MaLR	-45440	NM_030707	80891	Mm.45173	NM_030707	ENSMUSG00000015852	Fcrls	2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc	Fc receptor-like S, scavenger receptor	protein-coding	2.297	1.935	0.405	2.328	1.652	0.848	4.518	3.372	2.498	3.922	0.921	0.399	4.616	9.103	5.171	3.446	2.379	3.921	nan	0.592	0.309	0.768	0.418	0.524	6.475
15793	chrX	101207463	101213850	+	0	NA	intron (NM_001110311, intron 4 of 5)	B1F2|SINE|Alu	11907	NM_001110311	55988	Mm.206949	NM_018875	ENSMUSG00000046032	Snx12	2610001F05Rik|AW045757|SDP8	sorting nexin 12	protein-coding	5.598	0.503	0.463	2.489	7.003	5.570	5.736	5.721	5.066	6.149	5.659	3.595	6.356	7.547	4.644	5.164	4.487	4.191	0.507	0.822	0.330	0.429	0.428	0.331	4.308
588	chr1	132610467	132615447	+	0	NA	intron (NM_001160318, intron 10 of 26)	intron (NM_001160318, intron 10 of 26)	29901	NM_001160316	269116	Mm.326702	NM_182716	ENSMUSG00000026442	Nfasc	AA387016|D430023G06Rik|NF|mKIAA0756	neurofascin	protein-coding	11.839	nan	2.630	9.623	3.501	2.049	8.052	7.900	6.867	10.298	7.760	4.368	9.554	10.171	9.389	14.731	8.849	nan	nan	2.446	2.187	5.495	2.747	2.700	14.539
15457	chr9	106113010	106114867	+	0	NA	Intergenic	MER5A|DNA|hAT-Charlie	-17247	NM_026763	68553	Mm.28854	NM_026763	ENSMUSG00000032572	Col6a4	1110001D15Rik|AI413310|AU023415|Dvwa|EG235580|Vwa6	collagen, type VI, alpha 4	protein-coding	4.769	3.857	1.610	4.594	1.573	0.805	5.311	4.224	4.036	4.793	2.239	2.891	4.352	6.117	5.994	7.060	3.285	5.877	6.097	2.676	3.283	5.570	3.910	3.288	11.431
1684	chr10	98722144	98733231	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-187465	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	13.543	9.968	3.256	12.496	5.222	2.838	10.766	9.435	9.998	13.276	9.843	5.488	10.520	12.521	12.786	12.241	8.223	12.531	nan	2.856	2.356	nan	3.458	3.036	15.267
5097	chr15	31497473	31501023	+	0	NA	intron (NM_172606, intron 5 of 25)	intron (NM_172606, intron 5 of 25)	31789	NM_172606	223455	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	6.744	1.275	0.722	2.775	1.446	0.602	8.788	11.301	3.447	3.318	5.707	4.495	9.056	7.729	6.089	5.172	4.449	4.688	2.353	1.578	1.057	2.329	2.653	1.965	4.345
756	chr1	155348663	155349793	+	0	NA	intron (NM_011273, intron 2 of 14)	MLT1A0|LTR|ERVL-MaLR	68216	NM_011273	19775	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	5.897	3.887	1.378	2.547	3.301	1.740	2.855	3.541	nan	2.600	1.398	1.002	3.241	3.240	2.076	3.603	3.338	2.739	nan	0.652	0.846	1.159	nan	0.833	3.987
9935	chr4	11016821	11019184	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	-10383	NM_175175	71801	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	1.252	1.700	1.229	1.666	1.723	1.256	1.216	4.468	1.665	1.332	1.253	1.562	1.713	2.054	1.152	0.971	0.823	1.118	3.883	nan	4.087	9.548	1.962	1.811	0.998
15581	chr9	118915995	118917735	+	0	NA	Intergenic	B1_Mm|SINE|Alu	-9671	NM_133710	69274	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	3.651	0.804	0.433	5.761	2.109	1.138	5.458	4.984	3.908	4.083	2.300	2.185	4.937	5.298	3.862	6.479	3.978	5.411	1.014	1.028	0.765	0.812	nan	0.649	5.370
12983	chr7	20300110	20301810	+	0	NA	Intergenic	IAPEY3-int|LTR|ERVK	33105	NM_001167158	100042964	Mm.484995	NM_001167158	ENSMUSG00000095745	Gm4133	Vmn1r98	predicted gene 4133	protein-coding	5.532	7.979	2.708	4.879	3.502	1.743	5.639	6.050	2.421	6.354	4.938	2.845	4.259	6.179	5.299	6.538	5.126	5.672	3.623	3.598	2.581	3.435	3.185	3.171	9.535
4422	chr13	113233083	113233966	+	0	NA	Intergenic	Intergenic	23865	NM_023612	71690	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	4.622	2.695	0.447	2.859	2.817	1.113	1.713	1.379	2.505	3.374	1.995	1.103	1.079	3.757	3.110	2.547	1.611	2.215	0.902	0.685	0.468	0.890	0.637	0.230	3.623
11500	chr5	104120267	104123320	+	0	NA	Intergenic	L1_Mur1|LINE|L1	-7705	NM_010097	13602	Mm.29027	NM_010097	ENSMUSG00000029309	Sparcl1	Ecm2|Sc1|hevin|mast9	SPARC-like 1	protein-coding	7.502	6.662	2.245	8.196	4.916	2.943	5.795	5.230	5.035	8.112	6.637	3.138	5.335	7.540	7.260	8.239	6.158	7.280	nan	2.246	1.924	1.732	1.689	1.636	10.242
9543	chr3	95693983	95699204	+	0	NA	Intergenic	Intergenic	-8676	NM_001301705	229595	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	8.089	5.153	3.004	8.151	4.578	3.351	5.106	4.239	4.432	5.120	nan	2.292	3.480	5.724	3.700	nan	4.236	5.337	2.333	3.977	2.699	2.390	3.109	1.904	5.667
8851	chr2	155066366	155068730	+	0	NA	intron (NM_016661, intron 2 of 9)	intron (NM_016661, intron 2 of 9)	6949	NM_016661	269378	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	2.839	2.016	1.787	2.751	4.661	3.773	5.039	4.961	nan	nan	1.909	1.445	5.925	4.895	3.655	4.992	4.536	2.933	nan	0.942	1.452	1.165	0.774	1.191	4.969
6257	chr16	95551446	95563733	+	0	NA	intron (NM_001302152, intron 1 of 10)	MTC|LTR|ERVL-MaLR	-27224	NM_133659	13876	Mm.164531	NM_133659	ENSMUSG00000040732	Erg	D030036I24Rik	avian erythroblastosis virus E-26 (v-ets) oncogene related	protein-coding	nan	0.854	0.550	2.842	4.086	2.078	2.882	3.996	nan	4.962	1.165	0.966	5.535	8.515	nan	3.337	4.017	nan	nan	3.163	2.095	4.700	4.037	3.071	3.159
2590	chr11	86829594	86846382	+	0	NA	intron (NR_106195, intron 2 of 8)	intron (NR_106195, intron 2 of 8)	-30328	NM_026191	67487	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	nan	1.138	0.795	nan	5.129	3.945	2.661	4.732	4.762	4.983	3.724	2.414	3.722	6.500	2.862	3.250	3.891	4.644	1.838	1.709	1.619	nan	1.808	1.650	nan
542	chr1	127427083	127431162	+	0	NA	intron (NM_145128, intron 12 of 17)	L1MC5|LINE|L1	224136	NM_145128	107895	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	7.392	nan	0.568	3.201	3.215	2.033	6.257	5.815	5.085	4.197	5.768	2.965	7.577	6.700	5.759	9.942	6.875	6.112	nan	0.738	0.249	0.830	1.132	0.855	3.538
3750	chr12	113042362	113049971	+	0	NA	intron (NM_001291444, intron 3 of 23)	MTE2b|LTR|ERVL-MaLR	-28336	NM_029381	75671	Mm.23377	NM_029381	ENSMUSG00000012211	Tex22	1700028O09Rik|AV210422|Tep22	testis expressed gene 22	protein-coding	nan	1.805	0.646	1.127	0.485	0.209	0.934	1.145	0.831	0.685	0.656	0.384	0.770	0.799	1.212	nan	1.121	0.812	3.796	1.875	2.901	5.816	1.735	2.236	nan
3114	chr11	120399306	120404412	+	0	NA	intron (NM_199469, intron 12 of 15)	RLTR19C|LTR|ERVK	-23113	NM_027980	71885	Mm.274890	NM_027980	ENSMUSG00000025384	Faap100	2310003H01Rik	Fanconi anemia core complex associated protein 100	protein-coding	3.250	nan	0.488	4.406	2.154	1.508	4.228	5.904	3.677	nan	1.530	1.271	5.904	7.140	6.604	7.621	3.392	nan	4.683	nan	2.211	6.217	2.386	2.175	6.772
7845	chr19	47123845	47125816	+	0	NA	intron (NM_011053, intron 26 of 35)	intron (NM_011053, intron 26 of 35)	13464	NM_133746	72691	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	5.969	7.745	3.083	5.434	3.546	1.961	7.501	7.617	2.702	6.653	3.058	3.340	4.139	6.036	5.610	6.600	7.519	nan	1.612	2.854	3.324	4.825	4.748	6.065	9.735
10161	chr4	62351806	62355026	+	0	NA	intron (NM_001045528, intron 1 of 27)	RLTR20A4|LTR|ERVK	7132	NM_001045528	338355	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	2.812	2.374	0.984	2.927	1.033	0.699	nan	3.535	2.388	2.347	1.960	2.725	3.144	3.567	2.814	3.308	1.770	3.813	nan	0.927	0.386	1.791	0.399	0.438	4.297
14971	chr9	40123894	40133959	+	0	NA	promoter-TSS (NM_146855)	promoter-TSS (NM_146855)	-887	NM_146855	258854	Mm.377722	NM_146855	ENSMUSG00000049073	Olfr985	MOR171-4	olfactory receptor 985	protein-coding	5.721	2.065	0.789	2.933	1.723	1.166	6.849	7.533	3.509	3.108	1.394	1.388	5.793	6.131	6.064	8.202	4.233	5.628	nan	2.794	1.716	4.899	5.110	3.593	6.993
13787	chr7	135602662	135605158	+	0	NA	intron (NM_001316680, intron 2 of 20)	intron (NM_001316680, intron 2 of 20)	-1918	NM_001316679	19267	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	7.967	12.076	4.446	8.139	5.187	3.265	8.773	8.860	nan	8.683	7.203	3.737	7.382	8.302	7.768	8.307	6.252	7.100	5.831	3.621	4.216	5.541	3.785	4.337	12.438
10158	chr4	62314193	62316632	+	0	NA	intron (NM_001045528, intron 19 of 27)	RSINE1|SINE|B4	23865	NM_001290518	20530	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	2.952	2.096	0.741	1.918	1.639	1.006	3.361	2.800	3.621	4.404	2.387	1.281	4.410	5.762	3.593	4.112	1.210	3.962	2.656	1.262	0.657	6.453	0.986	0.406	5.797
13245	chr7	71142699	71147571	+	0	NA	Intergenic	Intergenic	-764560	NR_130995	78156	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	7.456	9.736	4.793	6.406	4.991	4.034	3.785	8.692	5.226	6.073	6.728	2.168	4.511	9.541	4.844	6.575	4.649	3.818	3.975	4.465	4.583	3.291	4.411	4.697	7.983
12258	chr6	54760405	54763102	+	0	NA	Intergenic	Intergenic	-55163	NM_199143	387524	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	5.050	4.304	1.977	4.101	2.325	1.423	2.524	3.167	2.709	3.465	3.503	1.896	2.551	3.304	3.795	4.304	2.929	3.711	2.301	2.219	1.519	2.891	1.981	2.176	4.069
9255	chr3	40818521	40820101	+	0	NA	3' UTR (NM_028140, exon 12 of 12)	3' UTR (NM_028140, exon 12 of 12)	19360	NR_045576	20873	Mm.3794	NM_011495	ENSMUSG00000025758	Plk4	1700028H20|AI385771|Sak|Stk18	polo-like kinase 4	protein-coding	2.947	1.478	0.806	2.466	3.268	2.050	3.647	2.400	2.994	3.137	2.087	1.206	3.533	4.886	2.492	2.656	3.649	4.272	nan	1.144	0.990	nan	1.225	0.706	2.038
5337	chr15	75652522	75663252	+	0	NA	intron (NM_028404, intron 12 of 13)	intron (NM_028404, intron 12 of 13)	20903	NM_028404	72960	Mm.182401	NM_028404	ENSMUSG00000000934	Top1mt	2900052H09Rik	DNA topoisomerase 1, mitochondrial	protein-coding	3.980	nan	0.456	5.802	2.523	1.581	nan	10.459	3.733	nan	nan	1.202	1.953	4.457	1.853	2.316	nan	4.842	1.896	1.085	0.800	nan	1.753	1.234	3.013
8073	chr2	29622662	29628949	+	0	NA	intron (NM_001039087, intron 1 of 25)	intron (NM_001039087, intron 1 of 25)	6085	NM_001039086	107746	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	5.374	1.432	0.951	2.441	3.467	2.422	6.375	12.162	nan	2.079	3.152	1.326	5.220	6.535	5.979	6.178	7.688	3.424	1.210	0.866	0.843	1.306	0.761	0.759	6.552
4649	chr14	48107858	48110787	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-11547	NM_033602	93834	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	3.687	0.962	0.337	3.855	3.529	2.370	2.145	3.063	4.884	4.027	1.623	2.882	4.946	5.207	4.066	5.774	3.127	5.286	1.780	1.192	1.100	1.061	1.357	1.029	4.473
9133	chr3	8922362	8925666	+	0	NA	promoter-TSS (NM_025434)	promoter-TSS (NM_025434)	-157	NM_025434	66230	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	6.472	4.515	1.519	5.870	2.491	1.339	6.425	5.049	5.544	6.128	3.159	2.866	7.936	7.319	7.234	9.062	5.547	8.530	3.394	1.300	0.774	4.065	1.665	1.060	7.980
7123	chr18	35131166	35134411	+	0	NA	intron (NM_009818, intron 1 of 17)	B1_Mm|SINE|Alu	13876	NM_009818	12385	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	5.045	0.765	0.600	2.700	2.984	2.112	5.726	4.643	4.071	3.781	2.921	1.556	6.096	6.339	4.758	nan	5.722	3.672	0.909	0.721	0.651	0.691	0.945	0.896	5.964
10414	chr4	117507321	117510338	+	0	NA	Intergenic	Intergenic	-11777	NM_025739	66743	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	6.800	3.282	1.528	6.621	7.313	4.716	8.217	8.001	4.844	9.232	3.953	3.947	6.578	10.626	7.576	9.120	5.631	7.309	5.125	3.949	4.265	7.371	3.838	4.617	13.295
11112	chr5	31453487	31457491	+	0	NA	intron (NM_172993, intron 2 of 13)	intron (NM_172993, intron 2 of 13)	3053	NM_172993	269639	Mm.259127	NM_172993	ENSMUSG00000062761	Zfp512	2500002M11Rik|AI450173|D230008H22|Znf512	zinc finger protein 512	protein-coding	6.025	3.314	1.605	nan	2.713	1.630	6.468	7.184	4.523	3.861	2.038	1.973	5.104	6.265	7.201	6.412	4.154	6.651	1.888	1.019	1.237	3.171	1.459	1.389	6.937
13772	chr7	134620144	134625110	+	0	NA	Intergenic	(TTTAA)n|Simple_repeat|Simple_repeat	-48060	NM_001033420	330662	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik	dedicator of cytokinesis 1	protein-coding	9.903	12.630	4.193	10.782	5.624	2.906	7.313	10.264	nan	10.365	6.784	3.365	9.452	10.195	9.894	10.167	7.095	9.901	4.733	2.935	2.636	5.773	3.898	3.595	13.273
170	chr1	52555914	52559510	+	0	NA	Intergenic	Intergenic	-57264	NM_008667	17936	Mm.25903	NM_008667	ENSMUSG00000002881	Nab1	-	Ngfi-A binding protein 1	protein-coding	7.074	9.053	2.477	7.035	4.173	2.868	5.858	4.315	4.970	10.701	7.266	3.508	7.406	8.343	6.708	10.311	5.402	8.233	4.227	1.873	1.626	4.151	2.428	3.275	9.086
4873	chr14	77136009	77141700	+	0	NA	Intergenic	Intergenic	-17909	NM_001253759	239188	Mm.441158	NM_172813	ENSMUSG00000022012	Enox1	B230207J08|D230005D02Rik	ecto-NOX disulfide-thiol exchanger 1	protein-coding	2.009	0.920	0.503	1.603	1.818	1.141	3.408	5.302	3.587	3.913	2.801	2.356	3.289	nan	4.498	4.875	2.141	3.486	1.067	0.760	0.391	1.019	0.804	0.604	2.292
14422	chr8	87977408	87981136	+	0	NA	Intergenic	Intergenic	-19677	NM_033327	94187	Mm.23452	NM_033327	ENSMUSG00000045333	Zfp423	Ebfaz|Roaz|Zfp104|Znf423|ataxia1|mKIAA0760|nur12	zinc finger protein 423	protein-coding	0.559	0.637	0.440	0.390	0.805	0.448	0.756	0.878	nan	0.523	0.431	0.268	0.415	0.654	0.664	0.893	0.951	0.760	nan	1.943	2.031	4.346	1.642	1.847	0.687
5745	chr16	4403336	4411550	+	0	NA	intron (NM_001291910, intron 3 of 11)	intron (NM_001291910, intron 3 of 11)	13055	NM_001291910	11515	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	3.255	0.868	0.687	2.431	1.783	1.308	nan	4.629	2.777	2.718	1.133	1.161	5.556	5.458	3.012	4.906	3.304	4.171	1.535	0.827	0.762	1.196	1.163	0.863	2.455
26	chr1	13648560	13650977	+	0	NA	intron (NM_145381, intron 2 of 6)	intron (NM_145381, intron 2 of 6)	10741	NM_145381	212442	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	12.645	4.968	2.351	7.913	4.056	2.012	7.267	6.769	6.496	8.771	6.969	3.179	9.550	9.150	9.876	15.476	7.788	10.208	4.160	1.981	1.388	3.492	2.375	1.822	12.789
6513	chr17	30140487	30144144	+	0	NA	intron (NM_148926, intron 3 of 4)	IAPLTR2a|LTR|ERVK	114220	NR_105839	102465223		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA	8.555	11.084	4.223	10.592	6.658	4.580	11.219	8.212	5.734	13.466	6.419	3.994	6.862	9.835	9.382	10.148	7.343	8.306	5.793	2.866	4.027	5.882	4.734	5.991	14.303
2116	chr11	45663060	45669997	+	0	NA	Intergenic	Intergenic	-141555	NR_045876	100009664	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	5.158	5.781	1.964	4.630	2.971	1.886	4.348	5.963	4.195	5.886	4.115	2.605	4.820	4.916	4.757	nan	4.339	nan	nan	1.229	1.393	nan	nan	1.454	4.553
7299	chr18	61768075	61775652	+	0	NA	intron (NM_178928, intron 1 of 18)	intron (NM_178928, intron 1 of 18)	14799	NM_178928	106877	Mm.26632	NM_178928	ENSMUSG00000033032	Afap1l1	AI173486	actin filament associated protein 1-like 1	protein-coding	nan	nan	0.715	nan	0.640	0.525	0.928	nan	1.280	1.158	0.803	1.509	nan	1.076	0.969	1.153	0.771	nan	nan	1.806	1.657	nan	2.327	1.955	nan
12334	chr6	72906417	72908882	+	0	NA	Intergenic	RMER19B|LTR|ERVK	-7670	NM_019715	74287	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	7.870	14.825	5.972	6.758	4.330	2.682	9.875	11.732	3.179	7.243	4.800	3.393	7.553	8.866	9.228	11.685	6.435	6.947	5.981	5.482	4.951	7.234	6.939	5.514	10.010
2250	chr11	59029005	59042624	+	0	NA	intron (NM_199152, intron 68 of 89)	intron (NM_199152, intron 68 of 89)	57721	NM_053168	94091	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	5.578	4.774	1.892	5.769	5.420	3.688	4.753	4.950	4.123	5.529	5.396	2.205	4.373	6.594	4.946	5.686	4.008	5.858	nan	1.811	1.576	2.313	1.615	1.401	nan
526	chr1	121543043	121546222	+	0	NA	Intergenic	Intergenic	-16167	NM_010483	15564	Mm.4833	NM_010483	ENSMUSG00000050534	Htr5b	5-Ht5b	5-hydroxytryptamine (serotonin) receptor 5B	protein-coding	13.071	2.847	0.868	6.856	5.940	4.002	10.972	7.053	4.965	7.593	4.781	3.436	8.779	9.837	8.051	12.762	11.727	8.563	4.227	2.960	1.690	4.032	3.841	4.048	10.950
9117	chr2	180958706	180963634	+	0	NA	Intergenic	Intergenic	-6055	NM_145760	228998	Mm.33765	NM_145760	ENSMUSG00000027575	Arfgap1	AI115377|Arf1gap	ADP-ribosylation factor GTPase activating protein 1	protein-coding	2.116	1.036	0.422	2.624	1.825	1.381	2.099	2.250	1.754	1.849	0.558	0.432	3.373	3.829	1.525	4.887	2.677	3.262	0.638	0.723	0.535	0.767	0.510	0.592	2.742
8298	chr2	62337171	62339921	+	0	NA	intron (NM_001159543, intron 23 of 24)	intron (NM_001159543, intron 23 of 24)	73685	NM_010074	13482	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding	5.900	0.681	0.327	1.159	0.394	0.100	4.634	1.898	1.532	1.956	0.311	0.475	5.665	2.427	3.378	5.197	5.340	4.555	0.596	0.345	0.112	0.433	0.245	0.239	4.599
3500	chr12	81002937	81010151	+	0	NA	Intergenic	Intergenic	-20264	NM_001146217	64075	Mm.273295	NM_022316	ENSMUSG00000021136	Smoc1	2600002F22Rik|AI848508|SRG	SPARC related modular calcium binding 1	protein-coding	9.232	1.883	0.978	7.716	4.799	2.485	7.231	4.988	6.422	7.744	6.866	4.378	9.247	10.122	7.925	9.447	6.667	8.355	2.581	2.577	1.807	4.375	2.520	1.899	12.451
6218	chr16	92644231	92647447	+	0	NA	intron (NM_001111023, intron 3 of 5)	intron (NM_001111023, intron 3 of 5)	51490	NM_001111023	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	8.662	nan	0.880	4.941	5.116	2.382	9.381	11.313	4.996	6.485	6.019	3.035	11.989	11.586	8.486	12.156	5.930	9.475	2.265	1.154	0.950	nan	0.946	0.906	13.893
8251	chr2	57033892	57034820	+	0	NA	Intergenic	L1_Mus1|LINE|L1	80682	NM_013613	18227	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	4.561	8.289	3.231	5.972	1.187	0.909	5.375	6.089	4.454	5.352	4.836	2.788	5.739	5.186	8.760	11.019	7.349	4.503	4.992	2.078	1.565	5.401	2.380	1.433	5.497
6568	chr17	34534966	34536548	+	0	NA	Intergenic	Intergenic	-18405	NM_030747	624681	Mm.471592	NM_030747	ENSMUSG00000092618	Btnl6	EG624681|Gm6519|NG13	butyrophilin-like 6	protein-coding	6.392	16.592	7.482	6.416	2.407	0.555	6.922	4.577	2.603	7.588	0.579	0.376	6.263	6.977	5.714	8.517	5.199	4.551	0.463	1.259	1.277	0.691	1.209	0.721	13.968
12954	chr7	19477813	19479462	+	0	NA	Intergenic	(TCCC)n|Simple_repeat|Simple_repeat	-20143	NM_172279	232944	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	2.131	1.580	0.808	2.590	1.797	0.650	4.773	5.905	1.394	3.588	1.766	0.906	2.598	4.598	3.041	3.107	4.288	3.226	0.963	1.951	0.967	1.996	2.183	1.534	4.950
10334	chr4	104781426	104783196	+	0	NA	intron (NM_001316671, intron 3 of 10)	intron (NM_001316671, intron 3 of 10)	15994	NM_001316671	110382	Mm.87072	NM_133882	ENSMUSG00000029656	C8b	4930439B20Rik|AI595927	complement component 8, beta polypeptide	protein-coding	4.391	2.797	1.349	7.142	3.316	1.893	1.328	4.441	2.131	6.260	1.778	1.171	3.476	3.654	2.814	4.837	2.880	4.807	4.726	5.518	5.649	6.041	6.678	5.198	9.014
14608	chr8	113489358	113491085	+	0	NA	Intergenic	(TCTCCC)n|Simple_repeat|Simple_repeat	-27061	NR_110476	78048	Mm.252797	NR_110476		4930571O06Rik	-	RIKEN cDNA 4930571O06 gene	ncRNA	5.858	1.907	0.841	3.985	4.412	3.966	3.481	9.214	2.324	1.747	2.300	2.085	2.791	5.440	4.052	3.951	2.278	4.074	0.656	1.421	1.244	2.493	0.671	0.489	4.861
232	chr1	60872386	60874355	+	0	NA	Intergenic	Intergenic	-35655	NM_009843	12477	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	1.423	0.698	0.313	1.475	3.627	2.379	2.467	1.457	2.448	2.295	0.381	0.647	4.337	3.883	3.158	3.732	3.102	2.651	0.581	0.688	0.344	0.659	0.342	0.195	1.469
10106	chr4	56778837	56783370	+	0	NA	exon (NM_026079, exon 14 of 37)	exon (NM_026079, exon 14 of 37)	-21226	NM_001081420	230234	Mm.268148	NM_001081420	ENSMUSG00000038827	Fam206a	simiate	family with sequence similarity 206, member A	protein-coding	5.010	nan	0.390	3.001	3.335	1.410	7.363	4.170	4.161	6.588	1.029	1.927	8.903	10.256	5.871	6.681	3.507	7.116	nan	0.850	0.686	1.508	0.332	0.504	8.587
6997	chr18	5138589	5139853	+	0	NA	Intergenic	Intergenic	92632	NM_001347449	225115	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	2.496	1.289	0.449	2.820	0.905	0.413	1.612	2.861	1.650	1.535	1.067	0.700	2.245	3.280	2.591	3.022	1.853	2.245	0.589	0.476	0.388	0.908	0.440	0.379	4.632
6207	chr16	92244637	92251105	+	0	NA	Intergenic	Intergenic	-44518	NM_134110	246133	Mm.156736	NM_134110	ENSMUSG00000039672	Kcne2	2200002I16Rik|AW048273|MiRP1	potassium voltage-gated channel, Isk-related subfamily, gene 2	protein-coding	5.429	nan	0.484	3.708	4.734	2.577	2.912	6.233	5.232	6.711	1.700	2.198	6.105	7.235	4.559	7.322	5.062	nan	0.583	0.510	0.299	nan	0.356	0.294	5.390
11615	chr5	116456398	116475103	+	0	NA	TTS (NR_015595)	TTS (NR_015595)	27028	NR_015595	76798	Mm.444322	NR_015595	ENSMUSG00000086219	Srrm4os	2410137F16Rik	serine/arginine repetitive matrix 4, opposite strand	ncRNA	5.468	1.830	0.759	4.696	3.404	2.085	8.725	7.163	4.983	6.284	3.840	2.689	6.899	9.140	7.676	6.852	5.165	6.542	nan	nan	1.072	1.694	nan	1.054	6.718
3458	chr12	77692846	77695749	+	0	NA	Intergenic	Intergenic	284156	NM_001252616	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	1.332	1.797	0.228	2.126	0.678	0.282	0.613	0.788	0.891	1.135	2.133	1.783	0.462	nan	1.355	nan	0.647	1.040	2.048	1.150	0.549	3.569	1.149	0.343	1.891
3054	chr11	118047000	118048412	+	0	NA	intron (NM_001167746, intron 62 of 80)	intron (NM_001167746, intron 62 of 80)	45436	NR_105898	102466768		NR_105898	ENSMUSG00000098958	Mir6933	Gm27856|mmu-mir-6933	microRNA 6933	ncRNA	3.225	2.341	1.572	2.479	2.268	1.043	3.148	3.078	3.323	2.689	1.833	1.662	3.566	3.894	3.793	4.600	3.390	4.317	1.342	nan	0.351	1.112	0.913	0.235	3.819
6008	chr16	32669697	32679676	+	0	NA	intron (NM_001347185, intron 1 of 6)	intron (NM_001347185, intron 1 of 6)	1532	NM_001289443	51789	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	1.675	1.642	0.568	1.624	1.238	0.743	5.931	7.789	2.960	2.327	3.284	2.933	2.770	4.424	3.406	nan	1.321	2.654	0.901	0.604	0.452	1.024	nan	0.535	3.839
1182	chr10	24198122	24199586	+	0	NA	Intergenic	Intergenic	-24663	NM_021509	59012	Mm.285934	NM_021509	ENSMUSG00000020000	Moxd1	3230402N08Rik|MNCb-5203	monooxygenase, DBH-like 1	protein-coding	4.921	0.557	0.603	1.301	1.314	0.599	3.611	2.717	2.329	2.883	1.593	1.943	3.752	4.824	3.461	3.107	2.577	2.762	0.809	0.664	0.455	0.790	0.515	0.464	2.562
7963	chr2	11350721	11352179	+	0	NA	intron (NR_040615, intron 2 of 2)	RLTR6-int|LTR|ERV1	11961	NR_040369	100503147	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	OTTMUSG00000011311	predicted gene 13293	ncRNA	6.364	3.256	1.467	3.262	2.432	1.715	4.362	7.328	3.236	3.284	3.299	2.220	4.133	4.694	4.469	4.592	4.075	5.529	2.090	1.346	1.424	2.242	1.783	1.764	3.322
6744	chr17	56301373	56307224	+	0	NA	promoter-TSS (NM_001111080)	promoter-TSS (NM_001111080)	-15	NM_001111078	18140	Mm.42196	NM_010931	ENSMUSG00000001228	Uhrf1	AL022808|ICBP90|Np95|RNF106	ubiquitin-like, containing PHD and RING finger domains, 1	protein-coding	3.337	4.032	1.501	2.582	1.827	0.770	4.002	3.885	2.374	2.935	2.421	2.378	2.817	3.597	3.788	4.941	2.132	3.611	3.891	2.353	2.714	5.473	2.462	2.920	5.125
1447	chr10	75896216	75914786	+	0	NA	intron (NM_011418, intron 6 of 8)	B3|SINE|B2	12103	NM_024440	70377	Mm.275878	NM_024440	ENSMUSG00000009092	Derl3	1810006I20Rik|1810063P04Rik|IZP6|derlin-3	Der1-like domain family, member 3	protein-coding	7.578	1.656	0.859	nan	4.717	3.562	5.206	3.354	4.393	5.910	1.721	1.119	5.983	6.981	nan	7.939	5.468	6.980	nan	1.006	0.964	1.281	1.021	0.883	10.287
207	chr1	58479424	58481284	+	0	NA	intron (NM_001025378, intron 6 of 14)	intron (NM_001025378, intron 6 of 14)	21072	NM_001025378	18393	Mm.3411	NM_008765	ENSMUSG00000026037	Orc2	AU041563|Orc2l	origin recognition complex, subunit 2	protein-coding	14.267	18.546	6.742	15.571	7.026	5.712	8.789	10.355	7.798	14.324	8.019	5.016	11.310	12.977	12.149	16.585	10.713	11.391	7.292	3.022	4.143	8.021	4.615	5.766	16.570
12734	chr6	128174152	128177140	+	0	NA	intron (NR_077223, intron 2 of 2)	ORR1E-int|LTR|ERVL-MaLR	8157	NR_077223	330427	Mm.426356	NR_077223	ENSMUSG00000107879	9330102E08Rik	-	RIKEN cDNA 9330102E08 gene	ncRNA	6.021	nan	0.522	4.900	4.445	2.207	6.187	5.688	3.972	5.452	1.127	1.354	7.524	9.573	4.638	6.402	3.407	5.706	0.556	1.662	0.661	1.424	0.960	0.419	7.174
7595	chr19	12646522	12650592	+	0	NA	intron (NM_145935, intron 4 of 5)	MT2B1|LTR|ERVL	15249	NM_145935	107146	Mm.39974	NM_145935	ENSMUSG00000063683	Glyat	A330009E03Rik|ACGNAT|AI195249|AI315345|CAT|GAT	glycine-N-acyltransferase	protein-coding	9.556	12.864	8.590	5.872	7.516	5.313	7.760	5.267	nan	4.020	6.352	3.114	4.427	5.643	6.585	7.505	7.944	5.780	2.506	4.724	3.503	2.746	4.519	4.556	7.730
1510	chr10	80447572	80450947	+	0	NA	Intergenic	Intergenic	-15606	NM_001164148	21423	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	5.231	9.801	4.072	8.229	3.415	3.372	3.647	5.106	3.594	4.997	2.114	1.611	4.199	7.971	5.407	5.935	3.671	5.939	5.424	3.812	3.831	7.072	3.762	4.298	7.771
48	chr1	20991613	20993509	+	0	NA	Intergenic	Intergenic	40935	NM_027974	71877	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	2.823	1.236	0.609	3.546	4.116	3.383	4.914	2.754	1.865	2.809	2.518	1.782	4.675	5.691	4.283	5.233	1.879	3.627	0.909	1.165	1.188	1.559	0.475	0.887	4.046
12125	chr6	31164810	31172637	+	0	NA	intron (NR_110470, intron 2 of 2)	intron (NR_110470, intron 2 of 2)	49751	NR_110470	232685	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	12.161	8.243	2.337	11.139	7.335	3.270	12.729	13.200	6.560	11.308	5.525	4.367	10.255	14.326	11.067	13.641	10.400	9.519	6.293	3.755	2.816	6.159	5.370	4.049	13.920
10968	chr4	153492065	153499261	+	0	NA	Intergenic	BLACKJACK|DNA|hAT-Blackjack	-12833	NM_001099299	230959	Mm.318874	NM_001099299	ENSMUSG00000039546	Ajap1	Gm573	adherens junction associated protein 1	protein-coding	0.381	3.061	2.078	0.579	0.265	0.158	0.324	0.421	0.334	0.379	0.259	0.267	0.326	0.378	0.532	0.485	0.245	0.467	6.579	2.850	1.825	8.431	2.270	1.630	0.606
12692	chr6	124705715	124709426	+	0	NA	intron (NM_013536, intron 1 of 5)	B3|SINE|B2	4608	NM_013536	14791	Mm.6390	NM_013536	ENSMUSG00000004268	Emg1	C2f|Grcc2f	EMG1 N1-specific pseudouridine methyltransferase	protein-coding	10.794	6.581	3.273	6.780	10.965	7.178	14.482	11.128	4.440	13.343	6.914	4.227	7.906	14.613	8.099	10.577	12.372	6.320	4.787	8.065	5.877	5.217	9.476	8.005	12.936
3641	chr12	101560738	101565718	+	0	NA	intron (NM_173023, intron 17 of 26)	intron (NM_173023, intron 17 of 26)	148345	NM_028924	74413	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	3.412	4.328	1.490	1.935	1.336	0.670	1.477	1.199	1.777	2.269	0.410	0.621	1.220	1.677	3.151	3.912	2.319	nan	1.310	0.701	0.598	2.602	0.352	0.308	nan
13833	chr7	139990414	140006586	+	0	NA	TTS (NM_001286009)	TTS (NM_001286009)	-5938	NM_001291066	11501	Mm.15969	NM_007403	ENSMUSG00000025473	Adam8	ADAM 8|CD156|CD156a|E430039A18Rik|MS2	a disintegrin and metallopeptidase domain 8	protein-coding	8.745	6.994	2.209	9.099	5.114	2.647	5.539	6.724	nan	9.475	6.782	3.211	7.244	8.789	7.028	8.788	5.781	10.060	1.551	1.599	1.168	1.770	0.776	0.659	11.674
3585	chr12	87160425	87162133	+	0	NA	intron (NM_010363, intron 5 of 8)	intron (NM_010363, intron 5 of 8)	-5794	NR_136901	625237	Mm.390529	NR_136901		Gm6566	EG625237	predicted gene 6566	ncRNA	2.130	0.956	1.144	1.284	1.824	1.452	1.643	0.955	1.233	2.005	0.346	0.282	3.597	4.718	2.357	2.325	2.526	3.330	0.418	0.253	0.736	0.590	0.280	0.667	3.438
8607	chr2	121780887	121783784	+	0	NA	intron (NM_172673, intron 1 of 14)	intron (NM_172673, intron 1 of 14)	24722	NM_172673	228564	Mm.121514	NM_172673	ENSMUSG00000027238	Frmd5	1500032A09Rik|5830442F04|A930004K21Rik|R75430	FERM domain containing 5	protein-coding	7.562	9.815	3.818	6.362	3.188	1.716	5.977	6.565	4.564	6.412	5.764	2.826	5.922	7.861	6.206	8.428	7.075	7.463	5.088	3.180	2.454	5.829	3.349	3.025	10.627
1988	chr11	16407126	16408777	+	0	NA	Intergenic	LTR41|LTR|ERVL	100533	NM_011343	20335	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	11.860	13.533	7.253	9.858	9.526	5.000	8.069	8.014	6.769	10.618	8.646	4.351	7.510	9.629	7.833	10.277	7.005	8.813	6.004	5.977	4.856	7.396	6.923	4.205	10.071
4128	chr13	51986117	51988808	+	0	NA	Intergenic	IAPEz-int|LTR|ERVK	-109279	NR_045061	74050	Mm.84860	NR_045061		4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	nan	0.396	0.388	nan	3.390	2.717	2.683	3.806	3.728	4.886	2.024	1.593	3.752	6.701	3.808	3.781	2.162	nan	0.757	nan	0.630	0.504	0.663	0.501	nan
14255	chr8	63953312	63958708	+	0	NA	Intergenic	Intergenic	-3840	NM_001195687	244495	Mm.485331	NM_001195687	ENSMUSG00000094443	Sgol2b	EG244495|Gm4975|Sgo2B	shugoshin like 2b (S. pombe)	protein-coding	4.954	0.674	0.488	2.563	5.563	3.117	4.130	7.498	5.064	4.601	3.829	4.485	6.406	6.404	5.934	8.013	5.065	4.914	nan	0.654	0.601	1.156	1.817	2.018	nan
5981	chr16	30510502	30513707	+	0	NA	3' UTR (NM_172614, exon 10 of 10)	3' UTR (NM_172614, exon 10 of 10)	38474	NM_172614	224090	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	8.149	5.716	3.347	5.241	4.702	2.892	4.217	5.479	4.293	4.856	9.315	5.584	5.335	6.924	5.983	7.195	3.043	4.334	4.454	3.824	2.924	7.840	nan	1.911	7.858
14675	chr8	122363853	122371011	+	0	NA	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-6686	NM_133202	170732	Mm.154808	NM_133202	ENSMUSG00000039079	Trhr2	TRH-R2	thyrotropin releasing hormone receptor 2	protein-coding	5.945	3.916	2.279	3.522	6.116	4.704	5.560	7.549	2.984	4.445	2.854	2.319	5.006	8.569	5.007	nan	5.971	4.235	2.867	2.993	2.952	3.330	3.885	3.458	5.258
9955	chr4	16086350	16090662	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-74629	NM_145950	209212	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	7.168	5.465	2.966	5.964	4.410	1.943	3.560	4.653	4.775	6.528	2.855	2.285	4.544	6.945	4.961	5.463	4.619	6.302	3.029	2.033	1.385	2.096	2.152	2.054	5.881
4376	chr13	108160720	108164107	+	0	NA	intron (NM_028042, intron 2 of 11)	BLACKJACK|DNA|hAT-Blackjack	3675	NM_028042	71991	Mm.212208	NM_028042	ENSMUSG00000021694	Ercc8	2410022P04Rik|2810431L23Rik|4631412O06Rik|B130065P18Rik|Ckn1|Csa	excision repaiross-complementing rodent repair deficiency, complementation group 8	protein-coding	4.316	nan	0.458	3.054	3.312	1.244	3.325	4.691	nan	5.623	1.541	0.829	4.550	8.269	4.733	5.272	2.571	nan	0.881	0.785	0.757	nan	0.955	0.731	4.119
10659	chr4	133620259	133625095	+	0	NA	intron (NM_001017968, intron 2 of 7)	intron (NM_001017968, intron 2 of 7)	10752	NM_001017968	503610	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	nan	0.684	0.404	1.697	1.110	0.518	2.081	5.195	nan	1.370	3.643	2.014	2.362	3.195	2.611	3.528	1.788	nan	0.942	0.812	0.659	0.921	nan	0.702	2.280
4243	chr13	73562635	73597904	+	0	NA	Intergenic	Intergenic	-23733	NM_146047	218335	Mm.30099	NM_146047	ENSMUSG00000021610	Clptm1l	C130052I12Rik|Crr9	CLPTM1-like	protein-coding	6.358	1.251	0.652	4.837	4.585	2.830	6.538	5.015	6.762	8.288	1.129	1.088	8.199	9.937	7.981	nan	4.660	9.165	0.764	0.733	0.662	0.923	0.816	0.619	8.822
13534	chr7	109209447	109215111	+	0	NA	Intergenic	Intergenic	-37072	NM_001302205	109594	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding	4.965	7.776	5.507	2.905	2.563	1.399	4.409	5.123	2.448	2.759	2.966	2.346	3.271	nan	3.813	nan	4.060	nan	nan	3.917	1.899	2.467	4.206	2.801	3.344
13353	chr7	86943816	86947580	+	0	NA	intron (NM_001105189, intron 5 of 5)	L1Md_F2|LINE|L1	30349	NM_001105189	637896	Mm.389957	NM_001105189	ENSMUSG00000091962	Vmn2r78	-	vomeronasal 2, receptor 78	protein-coding	2.829	0.909	0.492	4.058	1.562	1.160	2.625	3.092	nan	4.495	2.336	1.048	3.542	6.019	3.434	4.576	4.635	4.282	4.906	3.082	2.242	5.760	2.757	2.353	7.751
10665	chr4	133706842	133715332	+	0	NA	intron (NM_001080819, intron 4 of 19)	intron (NM_001080819, intron 4 of 19)	6021	NR_106086	102465707		NR_106086	ENSMUSG00000104566	Mir7227	mmu-mir-7227	microRNA 7227	ncRNA	nan	1.064	0.918	2.829	3.707	2.862	2.567	0.851	nan	1.361	0.620	0.439	1.836	5.383	2.474	1.426	1.294	nan	1.270	0.974	0.535	1.130	nan	1.083	0.853
2763	chr11	99299079	99303613	+	0	NA	Intergenic	MERVK26-int|LTR|ERVK	-16108	NM_029393	75706	Mm.46378	NM_029393	ENSMUSG00000020913	Krt24	2310058N18Rik|2310075C18Rik	keratin 24	protein-coding	1.700	nan	0.519	0.356	0.326	0.036	2.160	4.671	2.457	1.207	0.734	2.182	2.401	1.484	1.551	1.550	nan	1.093	0.502	nan	0.297	0.450	nan	nan	0.453
15607	chr9	121222225	121227109	+	0	NA	intron (NM_177589, intron 17 of 36)	GA-rich|Low_complexity|Low_complexity	52505	NM_177589	209012	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	8.810	8.042	4.339	8.304	5.217	3.210	3.952	3.949	4.181	5.093	5.240	2.892	2.971	4.999	4.193	5.109	3.538	5.706	2.361	3.714	2.535	1.923	nan	2.006	6.960
1141	chr10	19796474	19797947	+	0	NA	Intergenic	B4A|SINE|B4	54249	NM_029529	76157	Mm.74324	NM_029529	ENSMUSG00000050473	Slc35d3	6230421J19Rik|Frcl1	solute carrier family 35, member D3	protein-coding	5.191	1.826	0.752	4.080	3.921	1.915	6.546	7.036	4.458	3.427	3.487	3.867	5.015	4.809	7.306	7.339	5.510	3.508	1.186	0.935	0.180	1.041	1.368	0.583	3.942
11654	chr5	121843808	121847564	+	0	NA	Intergenic	Intergenic	-3342	NM_175474	231717	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	2.642	1.528	1.436	2.342	3.322	3.736	3.508	4.267	2.932	2.558	7.575	4.814	3.180	3.332	2.735	2.664	3.300	2.498	nan	nan	1.462	0.937	nan	1.789	1.980
14758	chr8	126279529	126281313	+	0	NA	Intergenic	MLTR14|LTR|ERV1	-18158	NM_175434	210027	Mm.405238	NM_175434	ENSMUSG00000057060	Slc35f3	B230375D17Rik	solute carrier family 35, member F3	protein-coding	1.741	nan	0.538	nan	1.846	0.741	2.802	4.767	1.627	1.878	1.802	1.225	3.049	5.418	4.169	3.394	2.350	nan	nan	1.017	0.382	1.581	0.658	nan	2.863
9904	chr4	6840259	6844763	+	0	NA	intron (NM_145711, intron 1 of 8)	intron (NM_145711, intron 1 of 8)	148212	NM_145711	252838	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	5.358	1.035	0.680	3.480	3.575	1.845	3.209	5.371	5.177	5.380	1.053	2.507	3.804	5.579	3.480	4.130	2.495	6.516	7.163	nan	1.956	8.182	5.904	4.477	2.221
984	chr1	184607827	184611678	+	0	NA	Intergenic	Intergenic	-52061	NR_040472	73590	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	6.214	2.071	1.245	2.887	1.821	1.018	5.317	2.494	2.498	3.195	0.905	0.368	5.571	5.438	4.266	7.438	4.832	5.662	0.696	0.638	0.573	0.516	0.599	0.644	5.541
11964	chr5	148536143	148538203	+	0	NA	intron (NM_011908, intron 1 of 4)	intron (NM_011908, intron 1 of 4)	15615	NM_011908	24109	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG	ubiquitin-like 3	protein-coding	3.428	1.599	0.223	8.298	2.104	1.774	3.865	1.654	3.098	6.911	1.700	1.399	1.913	4.181	8.125	4.311	1.579	4.339	0.737	0.219	0.457	0.886	0.464	0.682	7.414
8011	chr2	25023165	25034461	+	0	NA	intron (NM_146251, intron 20 of 34)	intron (NM_146251, intron 20 of 34)	-25566	NM_001177654	56876	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	4.234	1.757	0.501	4.665	1.723	1.089	3.226	6.950	nan	2.622	4.309	2.108	4.393	3.444	4.054	8.562	3.870	4.983	1.249	0.788	0.825	2.213	0.997	0.755	6.746
1155	chr10	20219509	20228849	+	0	NA	intron (NM_001198635, intron 1 of 17)	B3A|SINE|B2	15740	NM_001101561	621697	Mm.440587	NM_001101561		Rpl32l	EG621697|Gm6251	ribosomal protein L32-like	protein-coding	6.088	0.698	0.462	5.073	5.547	3.220	3.346	5.201	6.535	8.712	1.482	1.028	5.817	7.779	6.256	7.616	5.016	7.707	0.698	0.687	0.407	0.784	0.597	0.394	nan
10844	chr4	141783819	141787597	+	0	NA	intron (NM_172338, intron 2 of 14)	PB1D10|SINE|Alu	4936	NM_172338	214063	Mm.39102	NM_172338	ENSMUSG00000040697	Dnajc16	2900037O03Rik|4732437J24Rik|D030060M24|mKIAA0962	DnaJ heat shock protein family (Hsp40) member C16	protein-coding	nan	0.693	0.308	2.555	0.998	0.690	3.991	3.543	nan	1.695	3.521	1.552	3.228	3.049	4.258	4.359	2.465	nan	0.793	0.637	0.682	1.154	nan	0.252	6.501
788	chr1	161818895	161821317	+	0	NA	intron (NM_172645, intron 23 of 23)	(TGAA)n|Simple_repeat|Simple_repeat	-31611	NM_010177	14103	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	2.373	0.867	0.552	3.350	1.434	0.410	2.880	2.272	3.114	2.731	2.282	2.674	3.956	6.525	3.109	1.537	0.788	2.571	nan	0.454	0.299	0.949	nan	0.209	1.315
13117	chr7	31792487	31793828	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	80492	NM_001270542	626305	Mm.454021	NM_001270542	ENSMUSG00000078759	Scgb1b7	ABPA7_A29|Abpa29|Abpa7|EG626305|Gm6662	secretoglobin, family 1B, member 7	protein-coding	6.555	1.496	2.177	2.291	2.063	1.130	1.570	1.688	2.052	3.255	2.555	1.025	1.243	3.575	0.999	1.535	2.240	2.257	0.857	2.527	1.309	0.679	1.382	1.236	3.056
4797	chr14	67616767	67622676	+	0	NA	Intergenic	Intergenic	95889	NM_001110162	108912	Mm.33831	NM_175384	ENSMUSG00000048922	Cdca2	2610311M19Rik|AI586158	cell division cycle associated 2	protein-coding	3.819	0.707	0.551	2.463	3.418	2.230	4.748	4.802	2.612	3.361	0.972	1.324	4.800	5.595	5.095	4.162	3.221	4.577	5.934	nan	3.630	4.581	5.384	5.018	4.958
10751	chr4	137472311	137477338	+	0	NA	intron (NM_008305, intron 1 of 96)	L2b|LINE|L2	6021	NM_008305	15530	Mm.273662	NM_008305	ENSMUSG00000028763	Hspg2	AI852380|Pcn|Plc|per	perlecan (heparan sulfate proteoglycan 2)	protein-coding	nan	1.106	0.515	6.209	2.603	1.385	2.065	1.459	nan	2.314	1.807	1.178	1.443	3.078	2.601	2.952	1.814	nan	1.816	1.474	0.711	2.467	nan	0.860	5.415
7530	chr19	8848699	8849636	+	0	NA	TTS (NM_008144)	TTS (NM_008144)	-1618	NM_001013019	68852	Mm.265792	NM_001013019	ENSMUSG00000071656	Lrrn4cl	1110067I12Rik	LRRN4 C-terminal like	protein-coding	14.431	31.842	7.574	25.352	6.897	5.010	14.973	16.779	9.805	29.261	15.698	6.953	13.119	17.196	18.438	19.398	10.565	19.903	5.121	2.630	6.386	13.386	4.212	8.002	33.342
14887	chr9	20938533	20941577	+	0	NA	intron (NM_001314011, intron 5 of 38)	B3|SINE|B2	12568	NM_001199433	13433	Mm.128580	NM_010066	ENSMUSG00000004099	Dnmt1	Cxxc9|Dnmt|Dnmt1o|MCMT|MTase|Met-1|Met1|MommeD2|m.MmuI	DNA methyltransferase (cytosine-5) 1	protein-coding	4.048	6.337	2.572	5.389	3.425	2.760	3.415	2.285	3.757	3.383	1.804	1.722	3.391	4.256	3.654	3.908	1.692	4.789	1.422	1.165	1.452	1.199	0.668	0.446	5.220
5238	chr15	60719080	60721036	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	-102907	NR_030696	320469	Mm.230853	NM_177166		9930014A18Rik	-	RIKEN cDNA 9930014A18 gene	ncRNA	4.335	0.578	0.439	nan	1.013	0.640	nan	7.329	nan	3.336	0.474	1.826	8.311	3.699	7.116	5.736	5.019	5.649	1.277	0.266	0.314	0.620	0.400	0.345	3.069
12679	chr6	121195453	121196794	+	0	NA	TTS (NM_028730)	TTS (NM_028730)	12456	NM_001304773	74043	Mm.491240	NM_028730	ENSMUSG00000067825	Pex26	4632428M11Rik	peroxisomal biogenesis factor 26	protein-coding	5.203	11.031	2.538	6.652	1.777	0.540	2.321	3.736	4.083	4.805	2.443	3.598	4.900	4.857	4.966	6.710	4.099	7.823	10.125	1.767	1.176	4.222	2.381	1.834	5.688
6630	chr17	43508375	43514723	+	0	NA	Intergenic	B1_Mur1|SINE|Alu	-8776	NM_008585	17287	Mm.5346	NM_008585	ENSMUSG00000023914	Mep1a	AI098089|AW107200|Mep-1|Mep-1a|Mep1	meprin 1 alpha	protein-coding	5.420	0.740	0.407	5.829	4.024	1.902	2.457	1.743	5.086	5.980	1.211	1.013	5.477	7.417	3.820	7.813	5.046	5.790	0.928	1.081	0.539	0.743	0.906	0.706	7.012
6335	chr17	12929224	12937807	+	0	NA	intron (NM_153151, intron 3 of 8)	B2_Mm2|SINE|B2	6881	NM_153151	224530	Mm.490312	NM_153151	ENSMUSG00000062480	Acat3	ACTL	acetyl-Coenzyme A acetyltransferase 3	protein-coding	4.512	1.911	0.933	3.825	4.304	2.590	3.450	4.109	3.236	4.255	3.636	2.221	3.080	6.337	4.271	4.724	4.824	4.672	nan	1.687	0.846	2.165	2.250	1.388	6.564
11326	chr5	68204749	68225005	+	0	NA	Intergenic	L1Md_A|LINE|L1	183042	NM_001018019	433899	Mm.332422	NM_001018019	ENSMUSG00000068082	Grxcr1	Tg(Eno2-Gabrb3)0370Brll|pi|tde	glutaredoxin, cysteine rich 1	protein-coding	3.129	6.909	4.080	3.000	2.665	1.546	2.791	2.673	2.738	2.938	1.032	1.229	3.418	3.472	3.995	4.505	2.712	4.058	2.948	1.655	1.291	nan	2.734	1.967	2.007
11251	chr5	58106483	58109530	+	0	NA	intron (NM_001310608, intron 3 of 3)	B1_Mus1|SINE|Alu	344992	NR_046190	78163	Mm.243828	NR_046190	ENSMUSG00000105234	4930459L07Rik	-	RIKEN cDNA 4930459L07 gene	ncRNA	1.154	1.179	0.301	1.292	0.871	0.482	0.990	0.919	0.470	0.771	7.347	1.532	0.376	0.828	0.620	nan	0.233	0.587	1.000	0.498	0.630	1.160	1.401	1.140	1.076
4115	chr13	49776912	49778289	+	0	NA	Intergenic	Lx5c|LINE|L1	95470	NM_172015	105148	Mm.21118	NM_172015	ENSMUSG00000037851	Iars	2510016L12Rik|AI327140|AU044614|E430001P04Rik|ILRS	isoleucine-tRNA synthetase	protein-coding	7.429	9.433	3.398	6.179	2.508	2.058	4.946	6.816	6.080	6.825	7.316	4.169	5.751	6.198	8.685	9.001	4.369	7.978	4.942	nan	1.878	5.073	2.819	1.931	9.069
13779	chr7	135055175	135057109	+	0	NA	intron (NM_001033420, intron 29 of 51)	L1_Mus3|LINE|L1	-117712	NM_001143802	627214	Mm.323610	NM_001143802	ENSMUSG00000073805	Fam196a	B830028B13Rik	family with sequence similarity 196, member A	protein-coding	7.916	5.475	1.896	5.935	9.995	8.559	9.193	12.423	5.240	7.816	5.140	3.588	8.855	11.424	8.061	8.691	8.639	7.897	4.236	5.056	4.919	4.474	5.588	6.368	10.497
1313	chr10	58698634	58699738	+	0	NA	intron (NR_033565, intron 2 of 4)	intron (NR_033565, intron 2 of 4)	2441	NR_033565	103505	Mm.50261	NR_033565		BB019430	-	expressed sequence BB019430	ncRNA	5.430	4.908	4.353	2.872	2.409	1.424	1.880	2.297	2.657	2.271	1.462	1.130	1.879	3.572	2.531	2.488	2.815	2.442	nan	1.697	1.061	0.651	0.901	1.129	2.274
7891	chr19	55867073	55871168	+	0	NA	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-26201	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.199	nan	1.381	2.170	2.511	1.091	4.428	5.601	2.720	2.355	1.559	1.266	3.134	4.919	3.286	4.581	3.302	4.054	0.439	0.940	0.467	0.743	0.809	0.487	5.094
1617	chr10	93660921	93662408	+	0	NA	intron (NM_021320, intron 2 of 9)	L3|LINE|CR1	4190	NR_027478	667338	Mm.454582	NR_027478		Gm8580	EG667338	ribosomal protein L29 pseudogene	pseudo	8.543	7.106	1.985	8.132	3.816	1.465	4.608	5.732	5.700	6.771	5.073	3.872	5.925	8.284	7.157	7.992	6.220	8.966	4.094	1.782	1.250	nan	2.114	1.840	10.347
8634	chr2	126699965	126702868	+	0	NA	Intergenic	L1_Mur3|LINE|L1	-5912	NM_001252580	84092	Mm.272629	NM_019729	ENSMUSG00000027363	Usp8	AI574262|AW557536|Ubpy|mKIAA0055	ubiquitin specific peptidase 8	protein-coding	10.771	7.292	3.928	10.191	7.848	6.140	8.218	10.816	7.539	10.055	6.953	5.315	9.089	11.617	8.705	11.223	12.604	9.029	nan	6.220	5.026	6.795	7.497	7.752	12.232
6048	chr16	35422778	35425006	+	0	NA	intron (NM_028295, intron 10 of 16)	intron (NM_028295, intron 10 of 16)	-59974	NM_133704	317717	Mm.259164	NM_133704	ENSMUSG00000034473	Sec22a	1810005C06Rik|Sec22l2	SEC22 homolog A, vesicle trafficking protein	protein-coding	nan	0.755	0.687	0.689	0.564	0.529	2.074	2.176	0.699	0.969	0.138	0.289	1.170	1.764	2.063	2.827	2.443	2.108	0.692	0.548	0.161	0.431	0.257	0.380	5.584
3521	chr12	81466058	81470893	+	0	NA	intron (NM_001309810, intron 3 of 4)	L1_Mus2|LINE|L1	16376	NR_132135	66272	Mm.439970	NM_025461	ENSMUSG00000091803	Cox16	1810020G14Rik|1810055I05Rik|BB388670	cytochrome c oxidase assembly protein 16	protein-coding	6.212	1.578	1.245	3.058	3.743	3.071	4.573	3.297	5.037	3.964	7.432	3.705	5.290	5.452	3.869	4.792	4.364	5.015	1.441	1.174	1.123	1.220	1.519	1.050	4.832
490	chr1	107818611	107820270	+	0	NA	Intergenic	ORR1B2|LTR|ERVL-MaLR	-97819	NR_102306	319596	Mm.136054	NR_102306	ENSMUSG00000100457	D830032E09Rik	-	RIKEN cDNA D830032E09 gene	ncRNA	7.104	nan	0.314	2.655	2.657	1.176	5.831	3.154	3.793	4.192	1.960	1.252	8.699	4.689	6.607	9.575	5.864	5.073	1.631	0.539	0.517	0.504	1.861	1.079	4.777
1843	chr10	127013810	127015815	+	0	NA	intron (NM_009635, intron 16 of 19)	B1_Mus1|SINE|Alu	14103	NM_009635	11567	Mm.10739	NM_009635	ENSMUSG00000025432	Avil	Advil|DOC6	advillin	protein-coding	3.030	1.440	0.283	2.552	1.218	0.454	1.078	1.183	0.999	2.047	2.854	1.280	0.705	2.338	1.933	1.721	0.827	1.646	0.613	0.694	0.587	1.179	nan	0.240	3.564
15515	chr9	109019999	109024235	+	0	NA	intron (NM_173019, intron 9 of 13)	intron (NM_173019, intron 9 of 13)	-16450	NM_025858	66940	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	1.611	0.860	0.496	2.521	1.678	1.895	2.175	4.796	nan	2.257	2.944	2.256	1.930	2.489	3.334	nan	1.044	nan	1.546	0.401	0.920	1.378	0.695	0.922	3.418
12875	chr6	147642543	147643761	+	0	NA	Intergenic	Intergenic	-47089	NR_033636	100039727	Mm.396220	NR_033636	ENSMUSG00000085077	1700049E15Rik	Gm15761|OTTMUSG00000026044	RIKEN cDNA 1700049E15 gene	ncRNA	nan	0.423	0.424	nan	1.088	0.820	3.800	2.961	1.981	2.029	0.708	0.563	6.419	5.094	5.908	6.513	3.572	3.026	1.183	nan	0.201	nan	0.768	0.133	2.777
1112	chr10	17440163	17448733	+	0	NA	Intergenic	L1MC3|LINE|L1	-278780	NM_010828	17684	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	9.939	8.358	2.907	7.463	4.387	2.254	8.342	8.252	5.990	10.620	6.456	3.999	8.595	10.211	8.961	9.506	7.636	7.764	4.390	3.464	3.438	6.333	3.449	3.177	11.675
6502	chr17	29472222	29481322	+	0	NA	Intergenic	B1_Mur3|SINE|Alu	-14273	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	3.613	1.374	0.730	4.191	2.797	2.205	3.640	4.046	2.662	3.809	0.879	0.950	3.092	6.164	4.682	5.688	3.401	4.293	2.036	0.943	1.150	2.578	1.327	1.069	6.233
1294	chr10	56096523	56101628	+	0	NA	intron (NM_001033385, intron 22 of 32)	intron (NM_001033385, intron 22 of 32)	-7842	NM_001163833	73390	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	male-specific lethal 3-like 2 (Drosophila)	protein-coding	11.182	1.437	0.715	6.141	6.397	2.586	6.190	4.548	6.880	9.352	7.766	2.239	7.618	7.717	7.916	10.220	8.228	8.940	nan	0.786	0.562	0.553	0.619	0.366	10.750
15862	chrX	160882544	160884671	+	0	NA	intron (NM_001024624, intron 3 of 18)	B3|SINE|B2	23445	NM_001001496	414089	Mm.123113	NM_001001496	ENSMUSG00000055691	Gja6	A530015O12Rik|Cnx33|Cx33|Gja-6	gap junction protein, alpha 6	protein-coding	3.551	0.354	0.100	3.197	3.214	2.056	3.385	4.379	3.841	3.482	3.642	3.430	4.798	5.566	4.348	4.016	3.118	4.124	0.997	0.279	0.389	0.407	0.389	0.269	3.736
12137	chr6	32453833	32464670	+	0	NA	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-51890	NR_040277	319849	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	3.989	0.827	0.518	3.053	2.015	0.955	6.654	5.668	3.592	3.746	1.289	0.861	5.989	5.889	5.026	8.487	4.885	nan	nan	0.729	0.447	0.739	0.533	0.263	4.661
461	chr1	93982086	93985778	+	0	NA	Intergenic	RMER17D2|LTR|ERVK	-6577	NM_001039219	619597	Mm.417228	NM_001039219	ENSMUSG00000073608	Gm6086	EG619597|Gm219	predicted gene 6086	protein-coding	nan	2.062	1.110	1.693	1.463	0.129	0.525	nan	1.803	1.570	6.842	2.598	0.896	1.541	0.897	1.330	0.625	nan	nan	0.467	0.327	nan	0.765	0.271	nan
13755	chr7	133933990	133936915	+	0	NA	intron (NM_007400, intron 12 of 22)	intron (NM_007400, intron 12 of 22)	-152667	NM_001286031	101437	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	6.500	10.191	2.404	8.071	4.281	3.679	6.236	8.631	4.772	8.142	5.281	3.150	6.078	7.345	7.259	8.096	5.258	7.613	4.404	2.149	3.275	4.862	3.081	3.149	10.088
3451	chr12	77435616	77437491	+	0	NA	intron (NR_045554, intron 8 of 11)	intron (NR_045554, intron 8 of 11)	26412	NM_001252616	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	3.810	1.211	0.303	2.098	2.852	2.789	2.046	0.991	1.973	2.159	0.801	0.531	3.581	5.358	2.328	2.255	3.008	3.939	0.599	0.923	0.306	0.759	0.423	0.679	4.666
9438	chr3	88137928	88141181	+	0	NA	Intergenic	Intergenic	-2818	NM_001310587	17261	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	11.389	8.850	4.139	9.011	7.897	5.402	12.230	9.863	6.512	9.233	8.720	5.136	8.905	13.610	10.163	9.995	11.025	8.777	5.139	3.664	4.294	4.611	5.595	5.190	13.534
7894	chr19	55949584	55951586	+	0	NA	Intergenic	Intergenic	55264	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.216	nan	0.518	2.093	1.262	0.552	4.221	5.762	2.953	2.887	1.505	1.833	3.711	4.345	3.447	4.788	2.756	3.781	0.417	0.556	0.245	0.778	0.355	0.286	4.689
7111	chr18	34379997	34383721	+	0	NA	Intergenic	Intergenic	-8444	NM_007874	13476	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	11.138	9.539	3.450	8.463	4.315	2.447	7.368	10.316	8.518	12.508	5.628	4.171	12.060	9.772	8.032	10.447	8.185	10.230	5.184	2.885	2.247	5.542	3.658	3.462	13.724
6345	chr17	13851320	13856515	+	0	NA	intron (NM_010806, intron 19 of 32)	MURVY-LTR|LTR|ERV1	-92523	NM_022311	21646	Mm.486358	NM_022311	ENSMUSG00000038347	Tcte2	AI429268|Tcte-2	t-complex-associated testis expressed 2	protein-coding	nan	0.808	0.298	3.030	0.818	0.254	1.593	nan	2.161	1.989	2.303	0.960	2.285	2.502	2.186	3.903	1.569	3.055	1.779	0.596	0.640	4.474	0.944	0.398	3.603
4640	chr14	47543180	47545148	+	0	NA	intron (NM_172599, intron 9 of 9)	PB1D10|SINE|Alu	24270	NM_172599	100504663	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	4.080	1.150	0.574	4.205	2.330	0.949	2.908	2.597	2.744	2.998	1.728	1.042	4.802	6.028	3.278	3.659	1.724	4.337	0.740	1.040	0.779	0.582	0.544	0.086	5.325
1358	chr10	62501346	62502951	+	0	NA	intron (NM_011157, intron 1 of 2)	B4|SINE|B4	5607	NM_011157	19073	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	2.530	0.595	0.339	1.254	1.067	0.820	3.766	4.012	2.177	2.448	0.362	0.476	5.105	3.303	4.120	4.551	4.936	2.847	nan	0.351	0.455	0.239	0.331	0.344	2.721
782	chr1	158868611	158870427	+	0	NA	intron (NM_001085376, intron 3 of 21)	intron (NM_001085376, intron 3 of 21)	87919	NM_001085376	23850	Mm.458621	NM_001085376	ENSMUSG00000073530	Pappa2	PAPP-A2|PLAC3|Pappe	pappalysin 2	protein-coding	4.132	15.140	3.339	4.312	0.692	1.020	6.981	4.606	nan	8.664	3.336	2.538	2.885	5.170	5.932	2.991	1.252	4.344	4.795	2.085	2.233	5.435	nan	7.421	3.164
5225	chr15	59435077	59437597	+	0	NA	intron (NM_001164604, intron 3 of 4)	B2_Mm1t|SINE|B2	62139	NM_001164604	68501	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	7.259	1.108	0.411	2.855	3.246	2.183	13.789	6.692	4.858	4.019	0.931	1.678	8.697	5.761	6.985	7.108	8.433	6.113	0.907	0.796	0.600	0.681	0.818	0.734	5.985
15230	chr9	66478487	66479456	+	0	NA	exon (NM_145617, exon 58 of 78)	exon (NM_145617, exon 58 of 78)	35622	NM_175206	74165	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	3.005	0.994	0.894	2.325	0.958	0.129	2.964	3.149	1.919	2.238	1.395	0.712	4.351	3.314	4.268	5.230	2.344	2.526	3.368	4.653	1.959	3.363	2.804	1.191	2.931
8701	chr2	135194835	135198134	+	0	NA	intron (NR_040517, intron 2 of 5)	intron (NR_040517, intron 2 of 5)	19132	NR_040517	78805	Mm.78702	NR_040517	ENSMUSG00000085247	4930545L23Rik	-	RIKEN cDNA 4930545L23 gene	ncRNA	0.590	0.443	0.238	0.365	0.428		0.588	0.511	0.499	0.473	0.127	0.364	0.229	0.239	0.316	0.735	0.691	0.619	3.618	3.366	1.599	3.963	4.620	3.236	0.442
13069	chr7	29608115	29613353	+	0	NA	Intergenic	MERVL_2A-int|LTR|ERVL	-105274	NM_001081028	74206	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	6.341	4.582	2.370	6.082	5.264	3.632	6.924	9.742	4.871	5.111	4.683	3.958	7.184	8.866	6.932	6.756	5.882	5.883	2.583	2.715	1.921	2.791	2.778	2.446	6.775
10111	chr4	57150627	57157112	+	0	NA	Intergenic	Intergenic	-10713	NM_019427	54357	Mm.28217	NM_019427	ENSMUSG00000028434	Epb41l4b	6430543G08Rik|AA589614|AU021054|BB007528|D4Ertd346e|Ehm2|Epb4.1l4b|Lulu2	erythrocyte membrane protein band 4.1 like 4b	protein-coding	3.654	nan	0.449	3.468	2.251	1.124	nan	7.137	3.089	6.018	2.394	2.803	5.459	5.977	5.674	5.964	3.238	5.888	2.987	1.851	1.703	6.971	2.208	2.842	9.277
11531	chr5	106158483	106162119	+	0	NA	Intergenic	ORR1C1|LTR|ERVL-MaLR	-161039	NR_136913	102635633	Mm.383511	NR_136913	ENSMUSG00000105508	Gm32921	-	predicted gene, 32921	ncRNA	6.670	4.602	1.677	5.846	3.198	2.104	8.434	7.609	3.883	5.899	1.972	1.880	6.363	8.709	8.794	9.117	5.441	7.013	nan	0.692	0.884	1.296	1.289	1.308	6.917
10544	chr4	128514178	128518359	+	0	NA	intron (NM_001281955, intron 48 of 70)	MTE2b|LTR|ERVL-MaLR	93830	NM_177758	269585	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding	1.769	1.469	1.279	1.433	1.353	0.511	1.362	0.946	1.451	1.582	8.843	2.310	0.687	1.094	nan	1.581	0.761	1.257	1.236	1.085	0.796	1.262	0.591	0.636	1.683
6510	chr17	29751191	29754518	+	0	NA	Intergenic	RLTR17B_Mm|LTR|ERVK	-35837	NM_001163741	68597	Mm.390979	NM_026782	ENSMUSG00000024018	Ccdc167	1110021J02Rik	coiled-coil domain containing 167	protein-coding	4.886	7.340	2.489	6.431	4.025	2.468	6.171	4.832	4.232	8.615	4.211	2.934	4.547	6.843	7.442	8.292	5.055	6.411	5.800	3.818	2.324	6.664	4.585	4.748	10.542
3607	chr12	88301758	88311229	+	0	NA	Intergenic	Intergenic	15269	NR_003647	266459	Mm.312138	NR_003647		Gm5039	EG266459	eukaryotic translation initiation factor 1A pseudogene	pseudo	2.852	1.178	0.418	2.912	1.284	0.871	2.839	2.026	2.637	2.732	0.519	0.542	5.615	6.323	5.042	nan	4.960	3.723	2.423	1.163	0.794	2.847	1.046	0.737	6.957
3648	chr12	102953560	102957495	+	0	NA	intron (NM_001081017, intron 1 of 48)	intron (NM_001081017, intron 1 of 48)	6668	NM_001081017	217843	Mm.387073	NM_177621	ENSMUSG00000021198	Unc79	9030205A07Rik|Mlca3	unc-79 homolog (C. elegans)	protein-coding	5.940	0.630	0.321	3.487	3.580	1.836	7.197	8.031	6.058	7.690	2.362	2.785	10.095	8.603	6.149	6.199	9.595	6.917	0.742	0.807	0.620	0.924	0.576	0.757	8.165
781	chr1	158647615	158649898	+	0	NA	intron (NM_007495, intron 16 of 22)	L1Md_T|LINE|L1	143131	NR_030441	735253		NR_030441	ENSMUSG00000070103	Mir488	Mirn488|mir-488|mmu-mir-488	microRNA 488	ncRNA	7.451	6.579	2.340	5.527	2.747	2.452	7.445	6.235	nan	8.201	6.274	3.058	6.632	7.054	6.304	10.123	7.153	6.441	nan	1.944	2.268	5.216	nan	5.170	11.120
8029	chr2	26155339	26157346	+	0	NA	Intergenic	Intergenic	-15836	NM_001256521	109299	Mm.389259	NM_001256521		C330006A16Rik	AI551216	RIKEN cDNA C330006A16 gene	protein-coding	2.817	0.801	0.293	2.428	1.307	0.516	2.197	2.842	nan	1.861	0.734	0.600	1.955	2.221	2.938	3.501	3.367	1.751	2.120	1.190	1.349	3.459	0.883	1.055	5.656
14430	chr8	88854001	88856277	+	0	NA	Intergenic	B3A|SINE|B2	158111	NM_001128171	74256	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	1.604	0.507	0.460	0.511	0.126	0.106	0.410	0.574	nan	0.902	0.407	0.161	0.881	0.636	0.800	0.975	0.439	1.416	nan	0.508	0.269	0.711	0.345	0.151	4.512
3015	chr11	116729406	116732103	+	0	NA	Intergenic	RLTR13C2|LTR|ERVK	-21413	NR_003364	193217	Mm.100084	NR_003364		BC018473	-	cDNA sequence BC018473	ncRNA	3.864	nan	0.623	3.057	4.368	2.595	nan	4.708	2.389	nan	4.645	1.430	2.418	5.622	3.151	2.511	3.303	3.278	1.496	nan	0.485	0.915	0.386	0.521	2.997
9323	chr3	57139258	57140660	+	0	NA	Intergenic	Lx6|LINE|L1	161960	NM_008536	17112	Mm.856	NM_008536	ENSMUSG00000027800	Tm4sf1	L6|M3s1	transmembrane 4 superfamily member 1	protein-coding	5.023	0.477	0.862	3.045	2.803	1.365	1.937	1.639	2.879	2.955	1.366	1.489	1.616	3.703	nan	nan	2.477	2.623	1.398	2.042	1.278	1.059	0.809	0.921	1.848
1950	chr11	6403298	6407695	+	0	NA	3' UTR (NM_028601, exon 19 of 19)	3' UTR (NM_028601, exon 19 of 19)	3866	NR_106109	102465759		NR_106109	ENSMUSG00000098516	Mir7651	Gm27664|mmu-mir-7651	microRNA 7651	ncRNA	nan	1.057	0.607	2.781	2.790	1.670	3.368	7.364	3.769	3.761	1.123	1.703	4.504	5.698	3.479	4.760	3.497	3.677	0.697	nan	0.419	2.041	0.346	0.262	3.303
6987	chr18	4735718	4739326	+	0	NA	Intergenic	Intergenic	-74964	NR_045881	100038439	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	ENSMUSG00000073646	predicted gene 10556	ncRNA	3.675	0.799	0.480	6.612	1.993	1.424	2.695	1.708	2.127	1.661	0.953	0.444	nan	2.877	2.182	1.970	1.148	3.178	0.996	1.150	0.812	1.917	0.737	0.691	2.174
12406	chr6	87231472	87234433	+	0	NA	intron (NM_054041, intron 12 of 17)	intron (NM_054041, intron 12 of 17)	102823	NM_054041	69538	Mm.232525	NM_054041	ENSMUSG00000033420	Antxr1	2310008J16Rik|2810405N18Rik|Antrx1|Tem8	anthrax toxin receptor 1	protein-coding	4.754	1.411	0.440	3.383	1.985	0.884	8.133	4.459	3.506	3.332	3.102	2.440	7.773	7.320	6.394	9.320	5.146	4.621	nan	0.609	0.966	0.762	0.839	0.576	6.673
10713	chr4	135518620	135521037	+	0	NA	intron (NM_030189, intron 5 of 8)	intron (NM_030189, intron 5 of 8)	23841	NM_030189	78806	Mm.374844	NM_030189	ENSMUSG00000028801	Stpg1	4930403G18Rik|4930555I21Rik|Mapo2	sperm tail PG rich repeat containing 1	protein-coding	7.877	9.098	1.495	11.591	2.977	1.977	6.134	7.545	5.771	7.385	7.458	4.742	6.563	8.423	9.256	11.304	4.133	8.902	7.062	2.657	3.036	11.395	4.392	3.898	13.163
5748	chr16	4548570	4550858	+	0	NA	intron (NM_031182, intron 4 of 6)	intron (NM_031182, intron 4 of 6)	10006	NM_031182	83383	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	nan	1.515	1.630	0.777	0.886	0.689	nan	1.112	0.838	0.609	0.497	0.749	0.526	0.808	0.737	0.974	1.249	0.604	6.347	5.538	6.443	3.701	9.092	9.843	0.850
11272	chr5	65251224	65257812	+	0	NA	intron (NM_153391, intron 31 of 36)	intron (NM_153391, intron 31 of 36)	54822	NM_153391	213081	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	6.861	3.766	1.518	5.459	4.368	3.698	8.098	8.079	6.077	6.116	7.589	4.593	8.283	9.731	6.972	6.971	5.802	5.846	1.451	1.706	1.603	nan	1.850	1.564	6.266
15411	chr9	98321232	98325927	+	0	NA	intron (NM_144533, intron 1 of 4)	intron (NM_144533, intron 1 of 4)	26996	NM_144533	74080	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	2.052	1.021	0.472	0.759	0.491	0.156	3.869	4.480	0.608	0.902	2.414	0.861	2.267	1.954	2.506	1.060	0.567	0.691	1.309	1.223	0.860	1.418	2.757	2.158	0.958
12115	chr6	30624594	30628635	+	0	NA	intron (NM_144537, intron 8 of 11)	intron (NM_144537, intron 8 of 11)	-12604	NM_025350	109697	Mm.25377	NM_025350	ENSMUSG00000054446	Cpa1	0910001L12Rik|Cpa	carboxypeptidase A1, pancreatic	protein-coding	1.174	0.707	0.744	1.499	0.489	0.438	1.170	0.820	1.341	1.079	2.696	0.665	0.592	0.602	1.070	nan	1.915	nan	nan	4.592	1.653	5.824	0.937	0.628	0.905
9867	chr3	146508634	146511176	+	0	NA	TTS (NM_027332)	TTS (NM_027332)	10069	NM_010318	14707	Mm.140804	NM_010318	ENSMUSG00000068523	Gng5	G(y)5	guanine nucleotide binding protein (G protein), gamma 5	protein-coding	2.314	0.911	0.514	4.834	1.581	1.193	1.172	0.734	1.803	1.465	0.644	0.632	0.725	1.663	0.890	1.392	0.835	2.704	0.574	0.476	0.434	0.693	0.361	0.447	1.139
5578	chr15	94475173	94489108	+	0	NA	Intergenic	Intergenic	61367	NM_172437	78895	Mm.34344	NM_172437	ENSMUSG00000033356	Pus7l	3000003F02Rik	pseudouridylate synthase 7-like	protein-coding	0.566	0.534	0.496	0.773	0.566	0.279	0.888	1.235	0.747	0.604	0.238	0.558	0.809	1.069	1.356	nan	0.787	1.319	8.392	4.306	3.003	4.450	7.291	4.913	0.485
5327	chr15	74613429	74620525	+	0	NA	intron (NM_001177437, intron 12 of 26)	L1MEc|LINE|L1	19341	NM_001177437	69439	Mm.263708	NM_001177437	ENSMUSG00000022603	Mroh4	1700016M24Rik	maestro heat-like repeat family member 4	protein-coding	10.215	nan	0.672	4.229	3.777	1.820	13.472	15.346	6.501	7.746	10.266	5.783	12.512	9.324	10.367	10.550	10.307	9.139	3.708	1.329	0.981	3.693	3.125	1.948	10.170
11315	chr5	66993324	66995002	+	0	NA	intron (NM_001256122, intron 4 of 20)	intron (NM_001256122, intron 4 of 20)	25747	NM_001256122	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding	4.178	0.869	0.611	3.421	2.521	1.521	2.330	2.285	2.251	2.825	3.073	1.123	1.814	3.494	2.370	3.140	2.924	3.380	1.855	1.448	1.296	nan	1.318	1.118	2.899
8268	chr2	59478673	59484224	+	0	NA	Intergenic	Intergenic	-3205	NM_029723	76747	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	4.529	1.334	0.776	2.617	2.171	1.102	7.399	5.068	3.081	3.662	0.874	1.198	7.886	5.921	4.037	7.008	5.544	5.100	1.257	1.926	1.260	2.610	1.143	0.894	4.075
8486	chr2	102730818	102737825	+	0	NA	intron (NM_001077515, intron 1 of 10)	intron (NM_001077515, intron 1 of 10)	27883	NM_001077515	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	5.359	2.273	0.859	4.380	2.622	1.205	1.926	4.044	4.163	4.191	5.056	3.074	3.994	4.412	4.640	6.181	4.340	5.368	1.036	0.838	0.505	0.563	0.623	0.520	5.671
1890	chr11	3396289	3397665	+	0	NA	intron (NM_010718, intron 1 of 15)	intron (NM_010718, intron 1 of 15)	12261	NM_010718	16886	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	3.031	0.500	0.563	1.407	0.692	0.890	1.458	2.576	1.265	1.333	1.795	2.007	1.642	1.060	1.431	1.938	3.167	1.272	7.585	nan	5.786	6.027	8.673	11.254	2.326
8723	chr2	139995863	139997114	+	0	NA	intron (NR_110350, intron 5 of 12)	Lx5b|LINE|L1	70317	NM_001159640	75812	Mm.293449	NM_175225	ENSMUSG00000039033	Tasp1	4930485D02Rik|AW986064	taspase, threonine aspartase 1	protein-coding	8.672	11.005	3.718	9.769	3.023	1.398	6.274	6.393	4.520	6.198	4.312	3.103	5.461	4.668	7.695	12.333	5.501	9.303	5.179	3.170	1.322	4.902	5.065	3.742	12.457
6281	chr16	97937442	97942711	+	0	NA	Intergenic	ID_B1|SINE|B4	-17443	NM_174847	207781	Mm.1465	NM_174847	ENSMUSG00000045975	C2cd2	5730563M15|5830404H04Rik|AI314146|AI449533|BF168443|ORF25|mKIAA4045	C2 calcium-dependent domain containing 2	protein-coding	nan	0.672	0.441	1.936	2.204	1.079	4.467	3.229	nan	1.655	3.272	2.519	4.096	3.465	3.348	5.341	2.639	3.521	nan	0.768	0.302	0.879	0.724	0.310	4.493
15294	chr9	72727943	72729280	+	0	NA	intron (NM_010890, intron 14 of 28)	B2_Mm1a|SINE|B2	66264	NM_010890	17999	Mm.279923	NM_010890	ENSMUSG00000032216	Nedd4	AA959633|AL023035|AU019897|E430025J12Rik|Nedd4-1|Nedd4a|mKIAA0093	neural precursor cell expressed, developmentally down-regulated 4	protein-coding	4.092	0.875	0.446	2.369	0.354	0.094	1.303	1.427	1.090	0.973	0.537	0.579	3.619	4.190	nan	1.785	0.896	2.200	nan	1.793	0.787	5.217	1.205	0.689	6.368
10193	chr4	71811244	71813229	+	0	NA	Intergenic	Intergenic	388657	NM_011599	21885	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	4.123	0.536	0.430	1.502	1.095	0.380	1.767	2.684	1.864	2.778	1.832	0.407	2.832	3.967	3.900	2.545	1.412	3.884	1.796	1.270	0.362	1.347	nan	0.362	3.382
872	chr1	173041020	173049502	+	0	NA	Intergenic	Intergenic	85954	NM_146764	258759	Mm.389211	NM_146764	ENSMUSG00000062527	Olfr1408	MOR267-4	olfactory receptor 1408	protein-coding	5.943	2.842	1.468	4.055	4.294	2.857	3.868	3.360	3.478	4.644	2.746	2.300	5.553	6.086	4.745	7.089	5.098	4.236	1.568	1.087	1.026	1.450	1.266	0.931	4.181
15014	chr9	44204312	44206752	+	0	NA	intron (NM_007619, intron 1 of 15)	RMER15|LTR|ERVL	28514	NM_007619	12402	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	7.741	8.008	2.572	6.333	3.553	2.052	6.332	7.521	5.028	7.023	3.957	3.757	6.576	6.293	7.879	8.438	4.656	7.388	4.837	2.788	2.855	5.578	2.831	3.089	10.321
8801	chr2	151365415	151371406	+	0	NA	Intergenic	Intergenic	64039	NR_131976	100125594	Mm.381283	NR_131976	ENSMUSG00000087495	LOC100125594	-	uncharacterized LOC100125594	ncRNA	6.399	5.842	2.418	6.950	4.399	3.606	7.613	8.271	4.668	5.958	2.445	2.795	7.493	6.626	6.534	7.203	5.547	6.841	nan	1.697	2.756	3.415	2.268	3.000	8.754
1146	chr10	19900310	19902160	+	0	NA	intron (NM_008822, intron 3 of 9)	L1_Mus3|LINE|L1	6439	NM_008822	18634	Mm.338363	NM_008822	ENSMUSG00000020003	Pex7	MmPEX7	peroxisomal biogenesis factor 7	protein-coding	3.609	0.669	0.555	1.226	2.055	1.159	2.146	3.423	nan	2.322	2.805	0.773	2.192	4.167	3.243	3.384	2.988	3.378	0.736	0.670	0.549	0.757	0.992	0.612	3.392
89	chr1	36029574	36031108	+	0	NA	Intergenic	Intergenic	-38059	NM_015818	50785	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	7.733	1.183	0.748	2.069	2.752	1.079	5.687	1.609	4.034	6.053	1.462	0.837	6.907	7.072	2.659	2.898	1.704	4.082	2.117	2.039	1.677	0.994	1.443	0.751	4.102
8058	chr2	27599392	27602071	+	0	NA	Intergenic	Intergenic	-76470	NM_011305	20181	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	3.676	2.531	0.711	3.806	0.953	0.411	7.278	6.982	nan	2.518	8.396	3.151	2.872	2.607	4.086	9.013	4.709	3.005	1.906	0.873	0.913	2.581	1.703	1.221	7.668
988	chr1	185857276	185859484	+	0	NA	intron (NR_030555, intron 4 of 6)	intron (NR_030555, intron 4 of 6)	258930	NM_146106	226791	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	9.982	15.240	7.057	9.086	5.532	2.779	6.501	5.665	3.865	9.409	5.238	2.882	6.214	8.335	7.281	10.741	5.565	8.666	5.719	4.135	4.737	7.484	4.961	5.718	14.311
4342	chr13	102124464	102127665	+	0	NA	Intergenic	Intergenic	-357847	NM_001077495	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	0.400	0.517	0.441	0.197	0.087	0.048	0.367	0.470	0.489	0.366	0.448	0.402	0.173	0.334	0.434	0.541	nan	nan	1.422	1.277	0.490	3.585	0.719	0.218	0.350
11730	chr5	125547730	125563325	+	0	NA	intron (NM_001190352, intron 1 of 8)	B1_Mur2|SINE|Alu	23109	NM_001190352	208151	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding	5.392	1.973	0.743	5.516	3.496	1.945	7.272	6.864	4.800	7.207	2.370	2.235	6.783	8.931	nan	7.257	nan	nan	nan	1.092	0.799	2.337	nan	0.873	8.750
10229	chr4	83025100	83026769	+	0	NA	intron (NM_001198811, intron 1 of 36)	MTD|LTR|ERVL-MaLR	-4832	NM_177863	329872	Mm.242337	NM_177863	ENSMUSG00000059049	Frem1	BC037594|D430009N09|D630008K06|crf11|eye<m02Jus>|eyes2|heb|qbrick	Fras1 related extracellular matrix protein 1	protein-coding	1.482	1.332	0.355	2.103	1.064	1.139	2.947	3.395	3.448	2.664	6.160	3.371	2.826	3.797	2.404	2.123	1.247	1.158	1.805	nan	0.661	2.568	0.327	0.479	1.187
10026	chr4	44090150	44092290	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-7043	NM_015828	50798	Mm.256718	NM_015828	ENSMUSG00000028479	Gne	2310066H07Rik|DMRV|GLCNE|IBM2|NM|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding	4.849	nan	0.179	2.691	2.178	0.610	2.671	4.168	3.640	4.903	1.183	0.993	6.081	5.991	4.956	7.341	4.825	4.608	2.665	0.526	0.539	nan	0.519	0.304	5.394
13401	chr7	90798242	90800305	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-291513	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	3.486	12.732	7.754	2.539	2.223	1.319	1.222	1.170	nan	2.276	1.903	0.828	0.803	1.583	1.613	1.924	nan	nan	0.859	1.746	2.216	nan	0.987	0.586	1.776
1454	chr10	76603978	76611172	+	0	NA	intron (NM_001347207, intron 17 of 27)	intron (NM_001347207, intron 17 of 27)	15829	NM_146007	12834	Mm.1949	NM_146007	ENSMUSG00000020241	Col6a2	Col6a-2	collagen, type VI, alpha 2	protein-coding	3.684	0.547	0.312	nan	1.317	0.958	5.449	4.006	1.782	2.043	1.556	1.402	3.001	4.113	nan	4.842	4.049	3.202	nan	0.468	0.354	0.929	0.280	0.321	8.142
13319	chr7	80766824	80770675	+	0	NA	intron (NM_016721, intron 2 of 37)	intron (NM_016721, intron 2 of 37)	34582	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	5.833	1.552	1.194	nan	6.918	4.969	5.548	4.259	5.018	6.113	5.366	2.589	10.129	8.457	5.030	5.608	4.313	7.004	0.967	0.953	1.155	0.625	1.108	0.895	6.716
12206	chr6	48647336	48659406	+	0	NA	intron (NM_001286629, intron 3 of 4)	L1_Mus3|LINE|L1	6010	NM_212486	243374	Mm.86514	NM_212486	ENSMUSG00000064262	Gimap8	Gm457|IAN9|IMAP8	GTPase, IMAP family member 8	protein-coding	3.958	11.444	5.435	4.865	2.411	1.240	1.453	1.395	2.648	2.891	1.065	0.972	1.010	1.897	2.089	2.809	2.158	nan	nan	1.931	1.402	0.656	0.585	0.469	1.936
8528	chr2	115872685	115877479	+	0	NA	intron (NM_001346047, intron 10 of 13)	intron (NM_001346047, intron 10 of 13)	189537	NM_001346044	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	1.232	1.658	0.827	1.187	0.430	0.201	0.725	0.628	1.065	0.799	0.420	0.282	nan	0.588	0.646	nan	0.858	1.057	7.143	3.088	1.469	3.379	5.662	3.603	nan
6969	chr17	93831650	93836640	+	0	NA	Intergenic	L1_Mus3|LINE|L1	634977	NM_009625	11516	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding	3.578	0.432	0.385	1.733	3.031	1.979	7.870	2.684	2.508	2.002	0.831	0.508	3.585	2.747	5.517	4.565	4.916	4.256	0.519	0.328	0.319	0.130	0.729	0.675	3.153
14811	chr8	129205063	129210530	+	0	NA	Intergenic	L1Md_F2|LINE|L1	26250	NM_153780	72139	Mm.426514	NM_153780	ENSMUSG00000071302	2610044O15Rik8	2610044O15Rik	RIKEN cDNA 2610044O15 gene	protein-coding	6.568	nan	0.757	4.878	2.743	1.723	nan	9.885	4.528	4.856	6.835	2.658	5.623	6.855	6.036	7.858	5.215	5.987	nan	1.963	1.237	nan	1.302	nan	6.335
15466	chr9	106268896	106275330	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	-8948	NM_027354	70235	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	8.736	8.866	1.921	10.493	4.082	2.432	8.683	7.590	nan	10.288	10.609	4.839	5.650	9.270	7.736	9.086	3.772	9.702	3.300	2.360	2.741	5.237	2.131	2.489	14.948
12229	chr6	50757038	50758242	+	0	NA	Intergenic	Intergenic	-18475	NR_045984	319981	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	3.082	1.366	0.109	2.951	1.191	0.606	2.834	3.675	2.217	2.715	1.554	1.295	1.727	3.429	5.788	4.371	2.140	3.136	nan	1.573	0.611	2.022	1.407	0.476	4.236
8661	chr2	129023389	129025353	+	0	NA	Intergenic	L1MB8|LINE|L1	-41576	NM_027192	69737	Mm.33909	NM_027192	ENSMUSG00000027394	Ttl	2410003M22Rik|2700049H19Rik|AI848570	tubulin tyrosine ligase	protein-coding	7.313	10.398	2.205	9.417	2.372	1.350	3.283	5.602	4.018	7.251	7.015	4.515	4.371	5.684	5.978	8.335	4.246	6.874	nan	2.709	2.598	6.902	3.294	3.803	10.026
3960	chr13	34764640	34766659	+	0	NA	Intergenic	Intergenic	26007	NM_138746	108161	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	4.086	nan	0.448	4.033	4.239	4.138	nan	nan	4.490	5.741	3.312	0.800	3.643	4.682	3.406	3.504	2.052	5.402	1.081	0.939	0.596	0.915	0.764	0.568	1.675
7717	chr19	34327488	34330320	+	0	NA	Intergenic	L1MEi|LINE|L1	38245	NM_001146708	14102	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	2.592	8.139	4.011	2.266	1.196	0.739	6.861	4.077	1.991	1.874	2.078	1.253	2.965	5.787	7.163	3.162	3.302	2.649	0.704	0.473	0.433	0.682	0.372	0.270	3.478
5117	chr15	36747624	36752330	+	0	NA	Intergenic	Intergenic	40955	NM_001253807	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	7.121	0.922	0.680	3.012	3.373	1.064	9.137	8.802	4.379	4.870	3.955	3.178	7.722	8.724	7.761	5.305	5.377	7.306	1.405	1.605	0.762	nan	1.766	1.273	7.446
11916	chr5	143681398	143683910	+	0	NA	intron (NM_001163548, intron 1 of 12)	MIRc|SINE|MIR	31413	NM_001163548	19159	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	9.835	7.838	3.256	7.896	10.441	8.560	8.853	9.457	5.985	7.221	5.848	5.692	5.462	12.010	6.417	7.007	5.213	7.843	1.035	2.404	2.358	1.283	1.057	1.373	8.087
1584	chr10	89226722	89236304	+	0	NA	intron (NR_102339, intron 1 of 26)	intron (NR_102339, intron 1 of 26)	26277	NM_001277188	320091	Mm.236464	NM_178773	ENSMUSG00000035189	Ano4	A330096O15Rik|Gm65|Tmem16d	anoctamin 4	protein-coding	8.135	2.269	1.800	4.143	5.423	3.723	8.968	5.796	5.258	5.963	1.254	1.720	8.254	7.179	7.919	8.037	8.607	6.264	0.751	1.044	1.058	nan	nan	0.548	7.234
13971	chr8	3660248	3661366	+	0	NA	TTS (NM_001204959)	TTS (NM_001204959)	-4955	NM_026985	69189	Mm.175176	NM_026985	ENSMUSG00000013974	Mcemp1	1810033B17Rik	mast cell expressed membrane protein 1	protein-coding	4.596	2.652	0.653	2.462	1.051	0.967	1.212	1.546	1.428	2.277	1.824	0.847	0.618	2.769	0.916	1.775	2.106	1.514	0.575	1.424	0.652	0.384	0.390	0.210	2.548
10550	chr4	128639152	128641043	+	0	NA	Intergenic	Intergenic	-14605	NM_001195130	54383	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic-like 2 (Drosophila)	protein-coding	3.240	3.369	1.416	5.886	4.836	4.373	2.516	1.201	2.145	6.019	1.501	1.605	3.318	6.820	nan	5.498	2.722	3.995	3.556	2.167	2.660	5.553	2.690	3.471	7.179
7174	chr18	38303937	38305774	+	0	NA	intron (NM_001164621, intron 5 of 9)	intron (NM_001164621, intron 5 of 9)	8050	NM_001164621	56736	Mm.228903	NM_020012	ENSMUSG00000060450	Rnf14	2310075C09Rik|2610005D23Rik|AA986456|AU041447|D18Ertd188e|D7Bwg0165e|Triad2	ring finger protein 14	protein-coding	11.115	2.053	1.915	4.546	6.300	3.107	10.590	9.943	1.949	3.922	3.275	2.356	4.199	9.552	4.793	4.327	6.070	3.838	7.302	8.566	5.807	7.132	10.607	8.802	10.149
1675	chr10	98290960	98292488	+	0	NA	Intergenic	Intergenic	60143	NR_045179	667438	Mm.414522	NR_045179		Gm8633	EG667438	predicted gene 8633	ncRNA	2.725	0.838	0.861	1.982	1.608	0.541	2.534	2.740	2.728	2.785	nan	3.339	4.975	2.894	3.254	3.402	2.393	4.146	1.079	0.880	0.269	nan	0.802	0.241	1.621
649	chr1	135988630	135999661	+	0	NA	intron (NM_177642, intron 3 of 26)	B1F|SINE|Alu	12197	NM_177642	226438	Mm.119675	NM_177642	ENSMUSG00000051985	Igfn1	9830123M21Rik	immunoglobulin-like and fibronectin type III domain containing 1	protein-coding	14.417	10.427	3.567	11.528	5.404	2.559	9.049	10.003	7.477	8.968	5.758	4.432	11.771	12.060	10.104	16.454	7.099	12.646	5.253	3.413	1.915	8.644	2.950	2.009	14.504
7219	chr18	46682052	46687284	+	0	NA	Intergenic	Intergenic	43674	NM_033037	12583	Mm.241056	NM_033037	ENSMUSG00000033022	Cdo1	1300002L19Rik|Cdo|D18Ucla3	cysteine dioxygenase 1, cytosolic	protein-coding	10.608	10.897	4.698	8.089	6.849	5.035	8.983	10.296	6.265	9.541	7.390	4.224	8.641	9.624	8.204	9.043	7.690	9.570	7.140	4.804	5.955	6.329	5.859	6.559	11.125
5527	chr15	85429785	85433820	+	0	NA	intron (NM_016843, intron 9 of 11)	intron (NM_016843, intron 9 of 11)	71425	NM_001256072	328577	Mm.212960	NM_001256072	ENSMUSG00000096607	7530416G11Rik	-	RIKEN cDNA 7530416G11 gene	protein-coding	3.159	1.528	0.688	nan	2.190	1.212	nan	5.462	nan	2.782	1.765	2.465	2.554	3.344	nan	nan	nan	nan	nan	3.391	3.049	nan	5.210	3.803	3.522
14534	chr8	108072359	108078119	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	-486757	NM_010817	17463	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	3.885	1.351	0.599	3.680	4.920	3.922	1.687	5.584	3.329	3.605	0.816	0.952	3.986	5.422	2.953	3.790	3.520	3.551	0.946	0.980	0.757	nan	0.851	1.059	3.431
11595	chr5	115040632	115042741	+	0	NA	intron (NM_029012, intron 1 of 10)	B3|SINE|B2	30162	NM_029012	74585	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	1.779	0.698	0.359	0.869	0.240	0.119	3.123	1.992	0.408	0.423	0.392	0.184	0.236	0.443	1.514	1.430	1.946	1.211	nan	nan	0.349	0.481	nan	0.045	3.315
8793	chr2	150574797	150576764	+	0	NA	exon (NM_009977, exon 2 of 4)	exon (NM_009977, exon 2 of 4)	5365	NM_009977	13011	Mm.12965	NM_009977	ENSMUSG00000068129	Cst7	Cmap	cystatin F (leukocystatin)	protein-coding	5.112	10.497	3.917	5.598	2.227	0.624	4.827	7.127	3.914	5.305	3.394	3.196	5.651	5.774	8.136	9.526	5.793	6.766	2.796	1.775	1.032	3.510	1.817	1.857	10.774
3903	chr13	24891058	24895611	+	0	NA	intron (NR_131787, intron 18 of 19)	intron (NR_131787, intron 18 of 19)	-12266	NR_045182	73326	Mm.458692	NR_045182		4932702P03Rik	1700047I16Rik	RIKEN cDNA 4932702P03 gene	ncRNA	9.328	11.273	4.585	9.582	7.938	5.751	7.116	8.887	6.168	10.465	6.790	3.456	6.344	10.627	8.435	9.171	7.092	7.698	6.389	4.544	4.493	6.033	6.253	6.178	11.240
2150	chr11	50034738	50045387	+	0	NA	intron (NM_001290750, intron 1 of 7)	intron (NM_001290750, intron 1 of 7)	14731	NM_001290750	59044	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	5.421	3.426	1.003	6.304	3.105	2.276	2.945	6.613	3.902	5.166	2.818	2.491	3.604	5.175	5.669	nan	3.548	5.500	nan	2.899	2.752	nan	nan	2.504	7.206
1318	chr10	58839609	58843927	+	0	NA	intron (NM_172788, intron 1 of 9)	ORR1A2|LTR|ERVL-MaLR	28409	NM_172788	237353	Mm.333078	NM_172788	ENSMUSG00000037990	Sh3rf3	4831416G18Rik|Igfbp5-ip|Sh3md4|Sh3rf31	SH3 domain containing ring finger 3	protein-coding	4.556	2.804	1.227	2.518	2.861	1.721	3.368	2.841	2.587	3.633	0.787	0.602	3.314	4.202	4.866	7.443	5.865	4.773	nan	0.958	0.668	1.029	0.765	0.332	6.659
642	chr1	135293743	135298551	+	0	NA	Intergenic	Intergenic	-12063	NM_001159624	215615	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	3.108	0.748	0.659	6.109	1.567	0.947	0.975	1.218	2.128	1.914	2.819	2.562	0.860	nan	1.413	2.263	1.249	3.039	5.432	2.685	2.443	5.001	5.080	4.252	3.029
8704	chr2	135547990	135554061	+	0	NA	Intergenic	Intergenic	32195	NR_015544	320684	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	2.351	0.570	0.422	3.535	1.698	1.048	0.538	2.517	1.506	1.442	2.068	0.670	1.156	1.304	1.074	2.260	2.404	2.477	5.092	1.954	0.884	3.940	3.192	2.285	2.099
8191	chr2	35501256	35504413	+	0	NA	Intergenic	RMER5|LTR|ERV1	-41385	NM_001145821	14594	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	2.768	0.706	0.329	2.006	1.556	0.650	3.691	4.311	1.518	2.410	0.611	0.486	2.906	2.975	2.817	4.607	2.833	4.081	0.316	0.383	0.272	0.479	0.364	0.266	4.923
14743	chr8	125556143	125561718	+	0	NA	Intergenic	Intergenic	-25708	NR_015535	75930	Mm.195663	NR_015535	ENSMUSG00000110629	4930567H12Rik	4930579P07Rik	RIKEN cDNA 4930567H12 gene	ncRNA	4.003	8.133	6.041	2.876	3.292	2.636	nan	3.006	3.061	2.795	3.286	2.331	1.666	2.235	nan	2.216	2.589	nan	nan	2.853	2.622	nan	1.654	nan	1.845
13219	chr7	56388359	56391387	+	0	NA	intron (NM_021879, intron 19 of 23)	intron (NM_021879, intron 19 of 23)	150102	NM_021879	18431	Mm.137052	NM_021879	ENSMUSG00000030450	Oca2	D7H15S12|D7Icr28RN|D7Nic1|p|p<cas>	oculocutaneous albinism II	protein-coding	3.186	1.154	0.350	4.113	3.651	2.724	4.667	6.010	2.972	6.766	1.179	1.377	5.573	7.041	5.582	6.658	5.152	7.063	2.742	1.311	0.815	2.557	2.518	2.220	9.227
11279	chr5	65825779	65828361	+	0	NA	TTS (NM_001024917)	TTS (NM_001024917)	-36499	NM_001081105	74734	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	5.620	7.273	2.408	5.681	3.044	2.679	4.993	6.225	3.131	4.269	3.979	2.824	3.301	5.617	4.944	6.508	3.528	4.667	3.295	2.316	2.918	3.970	2.867	3.383	7.033
1764	chr10	116669269	116673370	+	0	NA	Intergenic	Intergenic	57858	NR_045345	72286	Mm.396207	NR_045345	ENSMUSG00000100198	1700030O20Rik	-	RIKEN cDNA 1700030O20 gene	ncRNA	9.603	0.543	0.380	3.390	2.593	2.043	8.624	6.624	5.106	6.365	1.121	0.538	10.176	9.582	7.894	9.288	10.365	5.724	0.702	0.673	0.796	0.353	0.739	0.632	10.221
13383	chr7	87891381	87892531	+	0	NA	intron (NM_001143834, intron 4 of 10)	intron (NM_001143834, intron 4 of 10)	307788	NM_001143834	108071	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	2.226	1.077	0.554	1.422	1.919	0.420	1.710	2.350	nan	2.374	1.048	1.372	2.463	3.623	2.454	2.044	2.244	2.790	1.218	0.573	0.895	nan	1.385	0.420	2.778
15624	chr9	122101893	122105700	+	0	NA	Intergenic	Intergenic	-13470	NM_001164572	20623	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	4.464	1.954	0.872	3.591	1.361	0.780	3.464	3.894	3.658	3.716	1.986	1.101	4.230	5.867	5.538	6.253	2.645	4.686	1.305	0.444	0.386	1.971	nan	0.476	7.745
6290	chr17	3690249	3693144	+	0	NA	intron (NM_198958, intron 4 of 12)	URR1A|DNA|hAT-Charlie	4565	NM_198958	224480	Mm.328756	NM_198958	ENSMUSG00000023802	Nox3	GP91-3|het|nmf250	NADPH oxidase 3	protein-coding	0.267	0.616	0.360	0.365	0.134		0.406	0.655	0.267	0.314	0.085	0.141	0.152	0.179	0.711	nan	nan	0.576	nan	1.068	0.227	3.514	1.864	1.104	0.517
10190	chr4	70193583	70198453	+	0	NA	Intergenic	ORR1B1|LTR|ERVL-MaLR	214417	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	7.219	2.969	1.031	7.105	2.468	1.677	4.088	3.907	4.123	8.100	7.069	3.057	4.382	6.643	6.220	9.283	3.816	8.295	8.931	7.010	5.206	10.453	nan	4.088	10.272
8847	chr2	154481534	154485784	+	0	NA	intron (NM_009823, intron 1 of 10)	ID_B1|SINE|B4	47175	NM_009823	12396	Mm.29914	NM_009823	ENSMUSG00000038533	Cbfa2t2	A430091M07|C330013D05Rik|Cbfa2t2h|MTGR1	core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	protein-coding	12.824	8.529	3.864	7.748	10.713	5.464	8.888	10.818	5.897	7.885	5.894	3.427	nan	10.286	7.705	9.271	8.718	7.700	nan	4.734	2.535	3.082	5.145	3.421	11.003
14010	chr8	11624828	11626026	+	0	NA	intron (NM_001281975, intron 3 of 6)	intron (NM_001281975, intron 3 of 6)	9609	NR_030781	102334	Mm.12459	NM_133971	ENSMUSG00000031508	Ankrd10	4833425P12Rik|AW549277	ankyrin repeat domain 10	protein-coding	2.910	1.624	0.296	1.865	1.305	1.109	2.388	3.443	2.119	2.104	0.983	1.677	2.548	2.869	3.708	3.166	2.732	4.054	1.688	0.777	0.261	1.156	0.770	0.243	3.390
14103	chr8	27268015	27270257	+	0	NA	intron (NM_007918, intron 1 of 2)	intron (NM_007918, intron 1 of 2)	8809	NM_007918	13685	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	8.396	11.949	4.476	9.743	5.879	6.597	6.455	9.503	6.430	9.834	5.435	3.316	7.760	7.844	8.467	10.410	7.609	7.724	5.049	3.063	6.042	7.594	5.074	7.345	12.367
10593	chr4	131035480	131044419	+	0	NA	Intergenic	Intergenic	-29475	NR_130167	77835	Mm.348412	NR_130167	ENSMUSG00000086262	A930031H19Rik	A930004I12Rik	RIKEN cDNA A930031H19 gene	ncRNA	0.433	0.480	0.098	0.294	0.096	0.065	2.288	0.481	0.361	0.493	0.214	0.189	0.747	0.740	nan	2.194	0.325	0.704	4.763	4.742	3.721	5.060	4.543	3.124	2.537
4849	chr14	75342975	75348589	+	0	NA	intron (NR_030568, intron 2 of 3)	intron (NR_030568, intron 2 of 3)	42364	NR_030568	100124475		NR_030568	ENSMUSG00000077981	Mir466f-3	Mirn466f-3	microRNA 466f-3	ncRNA	5.489	16.155	6.545	6.739	3.258	2.106	3.074	4.477	4.113	6.405	4.716	2.226	3.371	4.625	5.214	6.079	2.636	5.912	2.440	1.438	1.541	2.920	1.097	1.448	8.590
8668	chr2	130985109	130986730	+	0	NA	intron (NM_009730, intron 18 of 28)	L1_Rod|LINE|L1	54479	NR_105969	102465606		NR_105969	ENSMUSG00000098686	Mir6973b	Gm27815|mmu-mir-6973b	microRNA 6973b	ncRNA	8.249	9.938	2.797	7.848	3.210	0.966	7.061	10.514	3.724	5.135	3.903	2.900	7.172	7.666	10.807	12.937	8.557	7.987	nan	2.187	2.500	7.672	2.756	2.598	13.903
13038	chr7	27900575	27905865	+	0	NA	Intergenic	RLTR14-int|LTR|ERV1	26210	NM_028538	73430	Mm.379224	NM_028538	ENSMUSG00000070709	Zfp974	1700049G17Rik|AV321011|BB026409	zinc finger protein 974	protein-coding	4.990	0.686	0.463	3.330	4.244	2.419	3.115	6.434	4.449	4.266	7.459	2.704	6.402	6.119	4.202	5.608	8.737	4.792	0.931	1.314	0.931	0.365	1.638	0.959	3.848
5592	chr15	96468547	96475025	+	0	NA	Intergenic	(GAAA)n|Simple_repeat|Simple_repeat	-10943	NM_028148	72193	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	1.951	11.593	3.670	2.424	0.830	0.588	1.627	1.687	1.423	2.030	0.774	1.007	0.914	1.160	4.281	nan	2.870	1.259	8.782	4.950	4.046	10.584	6.440	6.816	2.199
184	chr1	54042609	54044198	+	0	NA	intron (NM_001001883, intron 1 of 28)	intron (NM_001001883, intron 1 of 28)	151631	NM_001001883	329152	Mm.132150	NM_172655	ENSMUSG00000042807	Hecw2	A730039N16Rik|D030049F17Rik|Gm971|Nedl2|mKIAA1301	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	protein-coding	3.913	0.750	0.752	4.659	1.276	0.259	1.570	1.910	3.412	3.112	1.228	0.646	2.159	3.178	1.879	nan	1.465	3.689	0.826	1.297	0.378	2.378	0.509	0.465	1.346
10597	chr4	131392367	131394558	+	0	NA	Intergenic	Intergenic	-382988	NR_130167	77835	Mm.348412	NR_130167	ENSMUSG00000086262	A930031H19Rik	A930004I12Rik	RIKEN cDNA A930031H19 gene	ncRNA	3.852	2.519	1.008	5.688	2.946	1.151	5.365	1.847	1.457	5.831	3.988	1.416	1.710	3.600	nan	3.661	1.484	2.788	8.380	7.110	7.188	6.888	12.108	13.115	7.529
776	chr1	158528569	158530600	+	0	NA	intron (NM_007495, intron 8 of 22)	intron (NM_007495, intron 8 of 22)	23959	NR_030441	735253		NR_030441	ENSMUSG00000070103	Mir488	Mirn488|mir-488|mmu-mir-488	microRNA 488	ncRNA	1.267	0.814	0.549	0.881	0.988	0.820	0.566	0.681	nan	1.148	5.276	2.477	0.835	0.844	0.668	nan	0.924	2.073	nan	0.408	0.460	0.573	nan	0.647	0.739
13804	chr7	137241402	137243334	+	0	NA	non-coding (NR_045885, exon 4 of 4)	non-coding (NR_045885, exon 4 of 4)	7685	NR_045885	100038555	Mm.444788	NR_045885	ENSMUSG00000109722	Gm10578	ENSMUSG00000073800	predicted gene 10578	ncRNA	3.686	nan		3.435	1.795	0.870	4.969	6.032	3.247	4.782	2.081	0.675	5.651	6.643	8.971	7.001	3.830	6.768	1.893	1.165	0.812	2.296	1.779	1.161	6.494
3738	chr12	112670675	112672870	+	0	NA	intron (NM_001331107, intron 1 of 13)	intron (NM_001331107, intron 1 of 13)	2504	NM_001165894	11651	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	6.327	1.872	0.605	nan	3.436	2.290	5.360	4.177	nan	3.927	4.976	2.566	2.261	nan	2.278	3.191	2.351	2.890	0.885	1.550	1.750	1.352	0.516	0.913	nan
14916	chr9	22109196	22113226	+	0	NA	intron (NR_030448, intron 3 of 4)	intron (NR_030448, intron 3 of 4)	2802	NR_106052	102466221		NR_106052	ENSMUSG00000098646	Mir7084	Gm27978|mmu-mir-7084	microRNA 7084	ncRNA	7.537	4.227	2.201	4.820	2.154	1.004	3.007	3.641	3.324	6.286	4.833	1.842	4.945	6.767	4.906	5.996	2.900	5.059	2.485	1.683	1.671	1.919	2.023	1.948	12.175
1570	chr10	86715378	86722449	+	0	NA	intron (NM_153595, intron 1 of 4)	intron (NM_153595, intron 1 of 4)	6148	NM_153595	103220	Mm.440762	NM_153595	ENSMUSG00000044937	Ttc41	AI449705|AU041509|Gnn	tetratricopeptide repeat domain 41	protein-coding	nan	0.446	0.539	0.198	0.134	0.105	0.320	0.202	0.213	0.139	0.165	0.138	0.094	nan	0.137	0.444	0.430	nan	7.155	4.756	2.507	nan	6.732	4.640	0.258
9286	chr3	51779752	51783416	+	0	NA	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	120405	NM_001310482	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	2.865	0.461	0.471	1.708	1.701	1.125	5.700	4.038	1.913	1.938	0.748	0.893	4.268	4.009	4.485	5.115	3.557	3.770	1.235	1.220	1.031	1.265	5.222	3.514	4.466
6381	chr17	24061341	24062580	+	0	NA	intron (NM_027008, intron 1 of 5)	intron (NM_027008, intron 1 of 5)	11525	NM_027008	69259	Mm.28171	NM_027008	ENSMUSG00000016946	Kctd5	2610030N08Rik|mKIAA0176	potassium channel tetramerisation domain containing 5	protein-coding	7.806	6.477	3.804	5.422	5.304	3.217	9.725	6.519	3.632	6.531	7.136	3.612	5.698	7.419	7.378	8.139	7.350	4.662	6.231	5.476	4.299	4.334	7.420	6.045	9.766
2673	chr11	94953540	94957989	+	0	NA	Intergenic	Intergenic	-11829	NM_018792	54388	Mm.30482	NM_018792	ENSMUSG00000038994	Hils1	H1.9|TISP64	histone H1-like protein in spermatids 1	protein-coding	0.956	nan	0.417	1.990	1.497	1.635	1.552	2.296	1.620	1.229	3.521	5.206	1.002	1.526	1.308	1.195	nan	1.385	1.586	nan	1.917	1.972	nan	nan	0.907
13758	chr7	134024735	134031638	+	0	NA	intron (NM_007400, intron 3 of 22)	(CAAA)n|Simple_repeat|Simple_repeat	196911	NM_007400	11489	Mm.439714	NM_007400	ENSMUSG00000054555	Adam12	Mltna	a disintegrin and metallopeptidase domain 12 (meltrin alpha)	protein-coding	5.412	nan	2.265	7.726	3.101	2.101	3.592	4.055	nan	5.349	3.335	2.487	4.635	5.326	4.981	5.886	3.943	6.371	4.787	3.185	2.438	4.847	3.246	2.921	7.385
12821	chr6	140568406	140573570	+	0	NA	intron (NM_144920, intron 20 of 30)	intron (NM_144920, intron 20 of 30)	-51675	NM_178803	11569	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	7.287	9.744	4.045	6.083	5.300	4.014	8.118	8.661	3.530	9.108	8.858	5.423	5.469	7.124	nan	8.000	6.694	5.636	5.216	4.002	4.981	6.432	3.726	5.375	9.759
5625	chr15	98763783	98766377	+	0	NA	Intergenic	Intergenic	-1962	NM_007478	11842	Mm.221298	NM_007478	ENSMUSG00000051853	Arf3	5430400P17Rik|AI854770	ADP-ribosylation factor 3	protein-coding	7.985	12.621	3.941	5.996	2.050	1.463	7.167	8.597	4.664	5.413	5.808	2.420	8.552	6.991	7.967	8.743	6.224	6.828	7.837	3.473	1.948	8.548	4.787	3.196	8.395
181	chr1	53894313	53896873	+	0	NA	intron (NM_001001883, intron 14 of 28)	intron (NM_001001883, intron 14 of 28)	46169	NR_106149	102465783		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	7.973	2.681	1.503	2.475	2.641	1.070	3.863	5.804	4.619	4.445	4.328	2.602	5.964	6.192	5.081	6.562	3.675	4.284	0.973	1.187	0.444	0.902	0.544	0.201	3.618
412	chr1	90030024	90033925	+	0	NA	Intergenic	Intergenic	-17397	NM_139152	208372	Mm.215164	NM_139152	ENSMUSG00000067081	Asb18	Asb-18	ankyrin repeat and SOCS box-containing 18	protein-coding	5.123	2.325	1.301	2.017	1.347	0.474	4.683	3.275	2.036	2.162	3.620	1.416	4.316	5.073	4.514	5.719	3.306	3.160	0.294	0.217	0.251	nan	0.220	0.148	3.220
11073	chr5	24189649	24194399	+	0	NA	Intergenic	RMER1B|Other|Other	27061	NM_001346582	231042	Mm.45513	NM_153092	ENSMUSG00000048439	Nupl2	AV116043|CG1|NLP-1|Nlp1	nucleoporin like 2	protein-coding	8.909	8.688	7.224	nan	7.980	7.928	10.567	7.751	5.423	6.267	5.519	3.987	7.237	9.142	7.070	8.432	9.037	5.703	4.084	3.329	5.694	3.463	4.406	5.758	5.925
6239	chr16	93910340	93915685	+	0	NA	Intergenic	ID_B1|SINE|B4	16555	NM_001165925	56173	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	nan	3.758	2.266	1.665	2.709	1.743	5.771	6.668	nan	1.772	2.772	3.247	2.951	4.050	nan	3.185	3.067	nan	nan	0.959	0.954	1.351	1.206	1.312	3.600
15790	chrX	100811370	100813181	+	0	NA	intron (NM_016747, intron 15 of 20)	intron (NM_016747, intron 15 of 20)	35004	NM_001177780	53310	Mm.4615	NM_016747	ENSMUSG00000000881	Dlg3	Dlgh3|SAP102|mKIAA1232	discs, large homolog 3 (Drosophila)	protein-coding	6.077	6.697	4.337	4.687	4.327	2.171	4.575	8.871	4.530	8.025	5.760	3.212	5.084	7.017	5.190	5.723	12.766	5.090	7.480	6.391	3.833	5.511	4.572	2.908	4.341
9293	chr3	51864246	51866037	+	0	NA	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	203962	NM_001310482	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	1.610	0.788	0.639	1.492	2.604	1.238	4.921	3.516	2.709	2.507	3.590	2.592	3.894	5.053	2.787	3.063	1.586	4.327	1.580	0.911	0.137	1.096	1.238	0.781	1.578
8642	chr2	127476902	127482609	+	0	NA	intron (NM_019789, intron 2 of 8)	intron (NM_019789, intron 2 of 8)	2744	NM_001111331	56461	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding	3.205	0.546	0.185	3.625	2.362	0.953	5.046	5.483	4.400	5.091	2.468	1.600	6.443	7.911	6.773	10.077	5.858	6.816	nan	0.480	0.388	0.605	0.378	0.476	12.792
14966	chr9	37185107	37187484	+	0	NA	Intergenic	(CAGAGA)n|Simple_repeat|Simple_repeat	-21928	NM_025464	66279	Mm.41451	NM_025464	ENSMUSG00000032121	Tmem218	1810021J13Rik|AV004931	transmembrane protein 218	protein-coding	2.362	0.694	0.656	2.389	1.211	1.493	1.410	0.818	3.412	4.654	0.346	0.286	3.940	2.202	2.089	3.949	4.098	4.070	nan	0.805	0.928	0.350	1.107	1.083	2.259
4933	chr14	103495648	103503615	+	0	NA	Intergenic	Intergenic	-13710	NM_022886	64929	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	4.414	4.486	1.885	4.558	1.836	1.291	3.669	6.511	3.416	6.380	2.890	2.261	4.639	5.167	5.861	5.873	2.869	5.270	5.292	2.614	1.631	4.759	4.598	3.567	5.087
3721	chr12	110768765	110772083	+	0	NA	intron (NM_001347428, intron 1 of 2)	L2b|LINE|L2	32492	NM_001347428	69641	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	10.312	0.404	0.157	nan	0.571	0.226	4.265	4.442	nan	4.211	0.735	0.372	4.342	8.151	7.010	11.142	8.112	3.801	0.517	0.486	0.258	0.861	0.209	0.113	16.297
14959	chr9	34928677	34940056	+	0	NA	intron (NM_001190913, intron 2 of 13)	intron (NM_001190913, intron 2 of 13)	-182362	NR_029475	78934	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	8.344	3.165	0.967	7.298	3.138	1.452	4.473	7.644	6.399	7.318	7.283	2.652	5.468	8.915	7.365	7.731	3.781	8.058	nan	1.217	0.852	2.450	0.701	0.384	12.832
2893	chr11	106129033	106131299	+	0	NA	intron (NM_011947, intron 6 of 15)	L2|LINE|L2	29976	NM_172397	67803	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	5.071	2.210	1.177	nan	2.744	1.748	5.972	7.774	nan	nan	3.404	1.983	4.456	5.740	4.615	6.675	6.169	nan	4.374	3.397	2.947	nan	1.996	2.061	5.901
2062	chr11	31769883	31775618	+	0	NA	Intergenic	Intergenic	51797	NR_102310	414116	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	6.941	4.099	1.636	7.134	7.133	3.995	5.983	5.671	5.109	7.788	3.182	2.649	5.700	7.339	5.190	5.799	nan	7.507	6.811	3.184	2.561	4.536	5.567	4.092	6.705
15242	chr9	67380984	67383050	+	0	NA	intron (NM_001081242, intron 8 of 57)	intron (NM_001081242, intron 8 of 57)	-145291	NR_029576	387185		NR_029576	ENSMUSG00000076379	Mir190a	Mir190|Mirn190|mir-190|mir-190a|mmu-mir-190|mmu-mir-190a	microRNA 190a	ncRNA	1.453	0.478	0.671	0.803	0.311	0.364	0.417	0.973	1.311	0.968	0.490	0.577	1.133	1.794	nan	0.724	0.695	1.166	nan	1.623	1.370	2.004	1.993	1.466	3.400
5204	chr15	58369462	58371384	+	0	NA	intron (NM_027211, intron 1 of 8)	intron (NM_027211, intron 1 of 8)	18851	NM_027211	69787	Mm.237985	NM_027211		Anxa13	1810034H17Rik|AV055219	annexin A13	protein-coding	4.049	0.598	0.368	nan	1.031	0.632	4.221	3.215	nan	2.086	0.700	0.549	4.207	4.249	4.472	4.245	2.764	5.424	0.732	0.806	0.264	0.638	0.609	0.262	4.204
3935	chr13	33014411	33025209	+	0	NA	Intergenic	RLTR13C1|LTR|ERVK	-7604	NM_011452	20706	Mm.45371	NM_011452	ENSMUSG00000021403	Serpinb9b	1600019A21Rik|R86|SPI-CI|Spi10|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9b	protein-coding	5.837	nan	1.829	4.789	7.547	4.381	nan	3.112	nan	nan	7.397	3.058	4.999	5.852	4.365	nan	3.598	8.411	0.908	1.344	1.145	1.068	0.862	0.733	nan
326	chr1	75989361	75992644	+	0	NA	Intergenic	PB1D11|SINE|Alu	444736	NM_009208	20536	Mm.5053	NM_009208	ENSMUSG00000006576	Slc4a3	A930038D23Rik|Ae3	solute carrier family 4 (anion exchanger), member 3	protein-coding	3.222	0.466	0.358	1.087	1.174	0.689	1.675	1.462	1.939	2.219	0.598	0.274	2.136	1.862	2.175	6.831	3.443	nan	nan	nan	0.651	0.300	nan	0.204	2.686
7740	chr19	37148938	37154512	+	0	NA	intron (NM_001290826, intron 2 of 10)	URR1A|DNA|hAT-Charlie	-22118	NR_045329	319931	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	5.652	0.685	0.350	5.054	5.141	3.291	2.293	nan	5.722	7.341	1.567	0.959	7.028	6.435	3.877	4.928	6.567	7.709	1.043	1.042	0.743	1.298	0.858	0.884	6.250
6989	chr18	4843637	4847568	+	0	NA	non-coding (NR_045881, exon 7 of 10)	non-coding (NR_045881, exon 7 of 10)	33116	NR_045881	100038439	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	ENSMUSG00000073646	predicted gene 10556	ncRNA	nan	0.802	0.660	0.719	0.374	0.071	0.356	0.548	0.503	0.304	0.555	0.191	nan	0.349	0.455	0.745	0.378	1.100	2.577	1.443	0.838	4.430	3.417	1.872	0.715
2886	chr11	105950931	105953597	+	0	NA	Intergenic	Intergenic	-8117	NM_007805	13056	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	3.488	0.934	1.245	nan	5.213	4.049	1.289	2.510	nan	2.514	1.293	0.716	1.606	3.174	1.653	1.868	2.215	2.305	1.042	1.345	0.907	nan	0.885	0.856	1.641
13593	chr7	117965085	117968624	+	0	NA	Intergenic	Intergenic	149293	NM_170669	267019	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	2.899	1.452	0.782	4.131	1.672	0.628	2.322	3.768	4.689	4.201	6.123	1.865	5.403	5.374	3.409	3.544	3.379	5.034	1.212	0.946	0.481	1.309	0.695	0.240	2.783
9688	chr3	107988264	107989671	+	0	NA	Intergenic	L1Md_A|LINE|L1	-2531	NM_008183	14863	Mm.440086	NM_008183	ENSMUSG00000040562	Gstm2	Gstb-2|Gstb2	glutathione S-transferase, mu 2	protein-coding	2.460	3.529	1.150	4.028	1.607	1.292	2.896	2.194	1.845	5.072	1.167	2.076	3.049	3.732	3.614	4.048	3.054	3.616	3.359	1.929	2.218	5.052	4.316	6.379	5.073
2543	chr11	82876209	82881222	+	0	NA	non-coding (NR_102720, exon 9 of 9)	non-coding (NR_102720, exon 9 of 9)	-7505	NM_001164571	67338	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	9.546	13.264	5.312	5.809	4.115	2.387	nan	3.767	2.593	4.148	5.809	2.384	1.904	3.542	nan	nan	2.294	nan	1.239	2.574	nan	0.655	0.780	0.527	3.578
8892	chr2	157325996	157326961	+	0	NA	TTS (NM_019642)	TTS (NM_019642)	10948	NM_001329683	14601	Mm.389327	NM_010285	ENSMUSG00000027643	Ghrh	GRF|Ghrf	growth hormone releasing hormone	protein-coding	1.746	1.078	0.534	0.977	3.574	1.250	2.198	5.976	nan	1.892	1.878	0.964	1.794	3.724	0.951	1.526	1.072	1.905	nan	0.979	0.888	1.073	2.825	1.698	1.976
5650	chr15	99681888	99683410	+	0	NA	intron (NM_009597, intron 3 of 11)	PB1|SINE|Alu	-9106	NM_001289791	11419	Mm.440107	NM_009597	ENSMUSG00000023017	Asic1	AI843610|ASIC|ASIC1a|Accn2|B530003N02Rik|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding	2.707	1.640	0.930	3.540	2.202	1.465	2.929	6.513	2.865	1.026	1.223	2.845	5.174	4.534	3.082	nan	3.314	2.782	1.114	1.104	0.658	1.142	0.925	1.278	2.577
5224	chr15	59424313	59433135	+	0	NA	intron (NM_001164604, intron 3 of 4)	intron (NM_001164604, intron 3 of 4)	54526	NM_001164604	68501	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	7.244	3.651	1.609	4.863	4.700	2.664	8.593	7.728	nan	5.862	4.836	2.842	7.466	8.819	8.765	6.723	4.610	7.576	1.076	1.248	0.678	1.087	0.844	0.542	7.965
5129	chr15	37879672	37883038	+	0	NA	Intergenic	IAPLTR2b|LTR|ERVK	79700	NM_199476	382985	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	0.514	6.876	3.490	0.549	0.376	0.217	0.578	0.651	0.594	0.452	0.412	0.299	0.323	0.315	0.484	0.681	0.806	0.706	1.026	0.431	0.234	nan	0.324	0.410	nan
13377	chr7	87772491	87775331	+	0	NA	intron (NM_001143834, intron 3 of 10)	intron (NM_001143834, intron 3 of 10)	189743	NM_001143834	108071	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	9.991	4.978	1.558	6.776	3.702	1.740	5.576	8.372	nan	6.828	3.837	2.646	8.424	7.119	6.750	nan	5.558	7.897	4.991	2.498	1.195	nan	2.719	2.162	9.643
12038	chr6	6905436	6906888	+	0	NA	Intergenic	B1_Mur4|SINE|Alu	-24094	NM_010056	13395	Mm.4873	NM_010056	ENSMUSG00000029755	Dlx5	AI385752	distal-less homeobox 5	protein-coding	5.413	4.777	1.379	6.025	1.665	1.556	6.285	5.213	4.031	3.926	3.296	2.732	5.419	4.992	6.650	9.991	6.143	6.070	2.998	1.766	1.297	3.392	1.418	1.560	7.180
6660	chr17	45934382	45936728	+	0	NA	Intergenic	Intergenic	89608	NM_001110267	22339	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	2.248	0.453	0.399	1.969	1.805	1.234	3.085	3.752	2.255	3.575	1.635	1.343	3.635	7.930	3.962	3.880	nan	2.685	0.651	0.236	0.462	0.661	0.411	0.450	4.367
12909	chr7	4815033	4819302	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	-4827	NM_133777	77891	Mm.389787	NM_133777	ENSMUSG00000060860	Ube2s	0910001J09Rik|6720465F12Rik|AA409170|E2-EPF	ubiquitin-conjugating enzyme E2S	protein-coding	3.717	6.233	2.712	4.686	4.441	3.012	7.566	7.383	3.789	3.755	4.856	2.308	5.855	8.039	5.342	4.554	3.113	4.582	1.823	1.372	1.346	2.018	2.168	1.438	6.700
7212	chr18	43407687	43411312	+	0	NA	intron (NM_001291455, intron 1 of 13)	A-rich|Low_complexity|Low_complexity	-16122	NM_009468	22240	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	7.990	0.356	0.254	1.719	3.103	2.076	5.651	9.094	5.191	4.918	0.372	0.626	7.563	5.678	5.057	4.185	5.550	5.940	1.881	0.794	0.828	2.229	1.874	1.494	5.191
7189	chr18	39020686	39029764	+	0	NA	intron (NM_175164, intron 1 of 22)	intron (NM_175164, intron 1 of 22)	32080	NM_175164	71302	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	8.418	0.633	0.615	4.167	4.470	2.891	8.177	5.055	4.418	5.924	2.530	2.211	9.545	9.997	6.182	7.479	6.912	7.661	1.747	3.223	1.826	2.798	1.959	1.315	7.203
4681	chr14	55543025	55546311	+	0	NA	intron (NM_028994, intron 5 of 9)	intron (NM_028994, intron 5 of 9)	4402	NM_028994	74551	Mm.29856	NM_028994	ENSMUSG00000040618	Pck2	1810010O14Rik|9130022B02Rik|PEPCK-M	phosphoenolpyruvate carboxykinase 2 (mitochondrial)	protein-coding	0.700	nan	0.317	2.681	0.943	0.439	1.219	nan	0.664	1.199	5.970	1.757	1.250	1.495	2.250	1.713	1.256	1.302	6.816	4.066	3.636	9.702	6.151	5.376	7.769
4287	chr13	94765209	94766357	+	0	NA	Intergenic	Intergenic	-23160	NM_009321	21371	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	4.357	1.028	0.771	1.592	1.745	0.382	1.198	1.185	1.994	2.552	1.756	1.223	0.932	3.113	1.947	2.588	nan	2.529	1.276	0.892	0.379	0.729	0.725	0.058	2.120
12976	chr7	20141702	20149046	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-6286	NM_001167573	100043037	Mm.484998	NM_001167573	ENSMUSG00000096348	Gm10666	ENSMUSG00000074310|Vmn1r141	predicted gene 10666	protein-coding	5.823	4.174	1.394	6.706	3.537	1.974	6.224	8.892	3.832	5.802	4.205	2.346	7.139	8.937	7.331	5.888	6.107	6.594	3.745	2.454	1.895	4.864	4.045	2.755	9.538
2791	chr11	100796018	100803075	+	0	NA	intron (NM_001113563, intron 5 of 18)	intron (NM_001113563, intron 5 of 18)	23024	NM_011489	20851	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	7.947	7.644	4.631	7.688	7.635	5.272	4.893	6.136	5.300	7.358	4.587	2.645	5.576	8.920	5.900	6.515	nan	5.706	4.488	nan	3.769	4.208	nan	nan	6.011
8076	chr2	29822909	29824543	+	0	NA	Intergenic	(TCTA)n|Simple_repeat|Simple_repeat	-3663	NM_026615	68205	Mm.20273	NM_026615	ENSMUSG00000069020	Urm1	2900073H19Rik	ubiquitin related modifier 1	protein-coding	4.876	1.125	0.511	5.066	4.779	3.437	3.247	5.657	3.866	2.681	2.213	2.343	3.289	4.387	3.403	5.937	4.234	5.676	1.798	1.596	1.297	1.858	1.185	1.089	5.547
5362	chr15	76506683	76516236	+	0	NA	intron (NM_010046, intron 1 of 16)	intron (NM_010046, intron 1 of 16)	359	NM_010046	13350	Mm.22633	NM_010046	ENSMUSG00000022555	Dgat1	ARAT|C75990|D15Ertd23e|Dgat	diacylglycerol O-acyltransferase 1	protein-coding	6.034	nan	1.271	3.676	3.461	2.517	8.376	9.945	4.482	nan	nan	1.972	8.396	8.469	6.116	6.259	9.062	5.881	2.361	1.690	1.958	nan	2.633	2.639	6.307
4481	chr14	17075245	17082871	+	0	NA	intron (NM_001289760, intron 1 of 9)	intron (NM_001289760, intron 1 of 9)	3273	NM_001289760	218772	Mm.259318	NM_011243	ENSMUSG00000017491	Rarb	A830025K23|Hap|Nr1b2	retinoic acid receptor, beta	protein-coding	7.124	6.058	1.807	6.254	3.584	2.244	6.114	9.644	nan	6.064	4.927	3.536	6.523	7.775	7.706	8.132	4.533	7.698	2.576	1.333	1.077	nan	1.257	1.009	7.473
10885	chr4	148178960	148184434	+	0	NA	Intergenic	Intergenic	21029	NM_176848	230904	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	1.590	nan	0.239	3.953	1.553	0.769	2.056	2.194	1.753	2.547	1.480	1.360	1.605	1.793	2.052	2.240	1.800	2.917	7.496	3.169	2.869	5.939	10.237	9.635	5.069
1867	chr10	127982386	127987141	+	0	NA	Intergenic	Intergenic	22745	NM_013786	27400	Mm.26719	NM_013786	ENSMUSG00000025396	Hsd17b6	17betaHSD9|Hsd17b9|Rdh8	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding	7.817	8.087	3.257	5.532	4.464	1.988	4.930	5.608	3.507	4.619	4.538	2.946	4.497	7.529	5.913	6.992	6.602	4.991	4.204	3.196	2.068	4.766	nan	3.336	7.763
11552	chr5	110771653	110775291	+	0	NA	TTS (NM_019700)	TTS (NM_019700)	-2755	NM_173066	75560	Mm.270487	NM_029337	ENSMUSG00000029505	Ep400	1700020J09Rik|AU023439|mDomino|mKIAA1498|p400	E1A binding protein p400	protein-coding	7.464	0.657	0.228	1.686	1.283	0.652	5.949	3.118	1.399	2.336	0.669	0.249	9.095	10.161	6.451	5.822	8.054	4.814	nan	0.673	0.492	1.109	0.697	0.414	6.351
4742	chr14	62298921	62306657	+	0	NA	Intergenic	L1_Mur3|LINE|L1	-9810	NM_173419	239133	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	6.556	12.596	4.517	7.836	3.745	2.535	4.273	nan	3.820	7.772	2.304	2.018	4.130	6.732	6.085	6.838	3.541	6.273	5.163	2.509	2.558	8.145	3.958	4.198	10.307
3969	chr13	36660110	36661981	+	0	NA	Intergenic	Intergenic	73432	NM_153529	68404	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	1.828	nan	0.420	1.400	1.489	0.844	nan	1.349	2.525	2.502	1.036	0.745	2.779	4.702	2.015	2.930	1.500	2.226	0.598	0.252		0.365	0.333	0.235	nan
4664	chr14	52720732	52727267	+	0	NA	Intergenic	ERVB7_3-LTR_MM|LTR|ERVK	-228304	NM_001170918	57269	Mm.88822	NM_020512	ENSMUSG00000059887	Olfr1507	MOR244-1|Mor28|Or28	olfactory receptor 1507	protein-coding	6.277	5.954	3.046	4.960	6.702	5.759	4.946	7.143	4.329	5.076	3.629	2.663	4.614	6.711	5.293	6.042	4.238	5.044	4.469	3.022	3.651	3.878	4.083	4.306	6.429
7957	chr2	8650574	8652021	+	0	NA	Intergenic	L1VL1|LINE|L1	-538218	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	3.260	0.389	0.306	1.841	3.265	0.895	4.344	6.243	2.000	3.075	3.531	1.472	6.294	4.003	4.501	4.545	4.969	4.538	0.673	0.249	0.357	0.294	0.346	0.091	1.602
15772	chrX	96130872	96136029	+	0	NA	intron (NM_010833, intron 1 of 12)	intron (NM_010833, intron 1 of 12)	37405	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	4.990	3.008	1.070	4.409	2.526	0.852	3.864	3.958	3.983	5.889	3.254	1.977	4.982	5.956	4.581	6.054	3.837	4.707	2.608	1.352	0.779	2.224	1.657	1.184	7.412
2505	chr11	77851463	77852709	+	0	NA	intron (NM_001291214, intron 35 of 38)	intron (NM_001291214, intron 35 of 38)	41786	NM_008952	19193	Mm.8543	NM_008952	ENSMUSG00000017453	Pipox	LPIPOX|Pso	pipecolic acid oxidase	protein-coding	7.099	5.687	2.785	11.296	4.042	2.167	3.969	5.004	4.395	9.150	5.355	3.111	5.255	6.332	6.111	8.118	4.462	8.083	5.738	3.084	nan	8.846	4.058	5.073	11.318
13571	chr7	117153840	117156927	+	0	NA	Intergenic	Intergenic	-225596	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	3.093	0.840	0.582	2.281	4.818	4.792	3.536	3.658	3.723	4.409	2.557	1.590	4.126	3.527	3.031	1.812	2.383	3.797	0.881	0.712	1.256	0.693	1.036	0.805	2.140
9264	chr3	45180100	45186358	+	0	NA	Intergenic	Intergenic	195031	NR_045172	72511	Mm.140700	NR_045172	ENSMUSG00000097040	2610316D01Rik	-	RIKEN cDNA 2610316D01 gene	ncRNA	0.209	0.322	0.291	0.490	0.107	0.117	0.278	0.253	0.194	0.261	0.223	0.147	0.050	0.183	0.253	0.369	0.378	0.243	1.610	2.557	2.447	7.294	0.260	0.267	0.501
8441	chr2	91200419	91201515	+	0	NA	Intergenic	Intergenic	-1945	NM_007387	11432	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	4.717	1.467	1.071	4.402	2.668	1.054	2.546	2.458	2.767	2.883	1.826	1.049	3.004	3.763	2.534	3.590	3.585	4.301	0.817	1.955	1.546	0.965	0.979	0.671	4.585
2936	chr11	109237255	109240253	+	0	NA	intron (NM_001165934, intron 15 of 16)	intron (NM_001165934, intron 15 of 16)	59427	NM_001165934	19739	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	2.791	11.387	4.903	5.298	2.388	1.098	1.031	1.391	2.841	2.380	1.173	1.339	0.891	nan	1.598	2.349	1.326	3.537	2.094	2.136	1.402	3.593	1.189	0.429	1.942
9110	chr2	180443073	180446169	+	0	NA	Intergenic	Intergenic	-16357	NM_148933	108115	Mm.133687	NM_148933	ENSMUSG00000038963	Slco4a1	OATP-E|Slc21a12	solute carrier organic anion transporter family, member 4a1	protein-coding	10.229	12.744	3.927	8.547	4.729	3.090	8.246	10.228	5.921	9.253	7.309	4.618	8.214	8.572	8.851	11.673	7.119	8.886	5.485	2.810	2.718	5.992	3.966	3.834	15.824
14440	chr8	89593351	89596687	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-550857	NM_021390	58198	Mm.214361	NM_021390	ENSMUSG00000031665	Sall1	Msal-3	sal-like 1 (Drosophila)	protein-coding	2.426	0.710	0.546	0.308	0.209	0.146	5.124	5.516	nan	2.420	4.098	2.112	4.852	4.100	3.897	1.280	0.998	2.914	nan	0.573	0.551	1.011	0.651	0.397	0.994
8364	chr2	73345829	73351789	+	0	NA	intron (NM_001276444, intron 14 of 15)	intron (NM_001276444, intron 14 of 15)	36157	NM_029022	74616	Mm.247457	NM_029022	ENSMUSG00000008226	Scrn3	4833415E20Rik|AI427019|AV002033|Ses3	secernin 3	protein-coding	11.003	2.411	0.977	nan	3.690	1.844	3.110	6.150	5.136	7.009	1.785	0.986	5.311	5.749	nan	nan	8.409	5.453	2.059	1.920	1.504	2.533	1.332	0.925	9.578
1289	chr10	53157298	53158792	+	0	NA	Intergenic	Intergenic	-122225	NR_038015	100502820	Mm.55827	NR_038015		Gm19395	-	predicted gene, 19395	ncRNA	1.819	0.910	0.896	3.253	1.090	0.649	0.357	0.544	1.356	1.405	0.790	0.481	0.613	0.926	0.736	1.361	0.543	1.903	nan	0.137	0.561	1.175	0.206	0.210	nan
8280	chr2	60520275	60522081	+	0	NA	intron (NM_008867, intron 4 of 29)	intron (NM_008867, intron 4 of 29)	32130	NM_008867	18779	Mm.5092	NM_008867	ENSMUSG00000054580	Pla2r1	Pla2-r|Pla2g1br|Pla2r	phospholipase A2 receptor 1	protein-coding	3.371	0.808	0.525	2.315	1.872	0.665	1.649	2.112	2.721	2.800	0.765	0.777	3.399	4.053	1.997	3.670	2.765	5.280	1.434	0.901	0.475	0.789	1.358	0.805	3.745
10337	chr4	105377888	105379598	+	0	NA	Intergenic	B3|SINE|B2	221396	NM_080555	67916	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	4.309	0.742	0.228	1.724	1.487	0.582	2.884	nan	1.980	3.021	1.535	0.806	4.350	3.368	3.288	4.586	3.196	3.085	1.347	0.808	0.358	0.860	1.342	1.215	3.910
7159	chr18	36649687	36651054	+	0	NA	intron (NM_175375, intron 29 of 33)	intron (NM_175375, intron 29 of 33)	-13690	NM_201256	108112	Mm.24790	NM_201256	ENSMUSG00000090264	Eif4ebp3	4e-bp3	eukaryotic translation initiation factor 4E binding protein 3	protein-coding	4.172	0.938	0.649	1.573	2.550	1.261	4.567	5.572	1.957	2.328	1.278	0.799	5.061	4.560	2.966	3.867	2.415	3.124	0.579	0.584	0.852	0.237	0.493	0.273	2.388
6113	chr16	49948507	49950132	+	0	NA	Intergenic	Intergenic	-31141	NR_045001	628951	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	5.275	1.807	0.878	1.961	1.955	0.394	2.455	3.275	3.836	2.802	2.257	1.780	5.090	5.457	2.989	5.357	3.830	6.900	0.874	1.101	0.267	0.892	0.697	0.350	2.193
8111	chr2	31392138	31393638	+	0	NA	Intergenic	Intergenic	-77382	NM_007494	11898	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	2.219	0.353	0.397	2.701	0.963	0.496	1.858	3.558	2.081	3.486	1.107	0.687	5.096	4.870	3.164	4.318	1.476	4.537	5.136	1.491	1.357	4.660	3.737	2.157	4.969
841	chr1	167546579	167549959	+	0	NA	Intergenic	RMER10A|LTR|ERVL	-50093	NM_009107	20183	Mm.3475	NM_009107	ENSMUSG00000015843	Rxrg	Nr2b3	retinoid X receptor gamma	protein-coding	5.569	0.966	0.246	nan	3.836	2.342	1.425	4.048	nan	1.804	1.035	1.554	nan	2.297	nan	2.157	1.659	2.740	3.433	3.594	3.223	4.809	nan	3.287	nan
7869	chr19	53465381	53469904	+	0	NA	Intergenic	ORR1F|LTR|ERVL-MaLR	-2846	NR_028427	381232	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|ENSMUSG00000074788|Gm10758	myocardial infarction associated transcript 1	ncRNA	4.775	4.853	2.849	3.040	2.511	2.073	5.407	8.325	2.277	2.296	2.784	2.850	3.727	4.362	nan	4.344	6.678	3.991	1.683	1.445	1.500	3.064	1.693	1.814	5.052
9160	chr3	19417502	19422756	+	0	NA	Intergenic	Intergenic	-88466	NM_001163536	66326	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	4.957	nan	0.629	3.584	3.213	1.713	5.123	3.916	5.367	6.140	5.060	1.704	7.035	9.825	5.536	5.446	4.069	9.289	0.545	0.626	0.326	0.608	0.480	0.283	5.464
11559	chr5	111236750	111239562	+	0	NA	intron (NM_001267622, intron 12 of 22)	intron (NM_001267622, intron 12 of 22)	-92541	NM_001301644	56305	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	7.420	7.315	1.938	10.151	3.384	1.677	6.582	9.432	4.175	11.875	5.612	2.156	6.121	9.930	8.998	10.781	4.237	8.743	nan	2.364	1.943	6.535	3.736	3.874	12.459
8708	chr2	136737750	136742762	+	0	NA	intron (NM_011428, intron 1 of 7)	Lx7|LINE|L1	26806	NM_001291056	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	4.002	1.062	0.609	2.821	2.464	0.971	3.286	3.808	4.020	3.995	2.876	1.601	4.016	3.997	4.046	5.588	4.233	4.298	1.075	0.746	0.416	0.743	0.823	0.563	4.186
5548	chr15	86030916	86035152	+	0	NA	exon (NM_009886, exon 1 of 35)	exon (NM_009886, exon 1 of 35)	743	NM_009886	12614	Mm.22680	NM_009886	ENSMUSG00000016028	Celsr1	Adgrc1|Crsh|Scy|crash	cadherin, EGF LAG seven-pass G-type receptor 1	protein-coding	6.218	6.017	2.462	nan	3.338	2.204	3.947	5.832	3.289	4.024	3.286	2.257	2.871	5.098	3.748	3.728	2.226	4.131	nan	1.772	1.848	nan	1.223	1.024	5.370
1751	chr10	115746594	115749099	+	0	NA	Intergenic	RCHARR1|DNA|hAT-Charlie	-69438	NM_001168680	216350	Mm.22270	NM_146010	ENSMUSG00000034127	Tspan8	C76990|E330007O21Rik|Tm4sf3	tetraspanin 8	protein-coding	2.935	0.527	0.610	3.410	0.930	0.699	1.450	0.966	1.779	1.834	0.582	1.060	1.246	1.152	1.567	1.869	1.483	1.946	0.788	0.841	0.493	0.406	0.459	0.113	2.123
15168	chr9	62283076	62285034	+	0	NA	Intergenic	Intergenic	-1876	NM_025721	66712	Mm.263615	NM_025721	ENSMUSG00000046846	Spesp1	4921508E09Rik|AI428149	sperm equatorial segment protein 1	protein-coding	4.517	1.209	0.965	4.083	2.602	1.506	3.564	5.430	3.344	3.608	0.785	1.282	3.142	6.111	3.877	4.765	4.023	4.979	2.055	2.029	1.898	2.032	1.344	1.367	7.059
11301	chr5	66477563	66500167	+	0	NA	intron (NM_001310626, intron 3 of 15)	intron (NM_001310626, intron 3 of 15)	129952	NM_009686	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	5.703	1.121	1.051	3.787	5.488	3.586	5.541	5.521	5.234	6.110	2.275	2.120	5.422	8.167	5.521	5.848	5.125	5.083	0.870	1.274	1.098	nan	0.880	0.748	4.410
8510	chr2	104330590	104335676	+	0	NA	intron (NM_001033347, intron 1 of 20)	intron (NM_001033347, intron 1 of 20)	77201	NM_001033347	241589	Mm.358909	NM_001033347	ENSMUSG00000068373	D430041D05Rik	9630056G07Rik|G2	RIKEN cDNA D430041D05 gene	protein-coding	8.380	8.625	2.332	8.287	3.346	1.901	5.841	7.714	4.042	11.343	4.598	2.166	6.823	7.433	6.777	8.366	6.460	8.541	6.983	2.667	2.896	6.166	4.604	5.313	12.509
7402	chr18	75744769	75746140	+	0	NA	Intergenic	Lx8b|LINE|L1	-47758	NM_201354	269037	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	2.776	nan	1.069	1.923	1.724	0.931	2.532	3.542	2.968	2.238	2.326	1.330	3.178	3.171	3.319	3.235	2.043	5.433	1.023	nan	1.075	4.090	0.445	0.183	3.460
9316	chr3	54538526	54541292	+	0	NA	Intergenic	Intergenic	-153196	NM_019995	56790	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	6.994	10.970	4.756	8.595	5.219	3.479	8.282	5.511	4.618	10.588	5.844	3.408	7.230	8.194	7.899	8.110	5.430	8.229	4.878	2.822	4.091	5.739	3.435	4.872	12.315
14928	chr9	27907223	27910792	+	0	NA	intron (NM_177906, intron 1 of 7)	intron (NM_177906, intron 1 of 7)	117738	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding	0.290	0.995	1.005	0.244	0.054		0.340	0.142	0.239	0.204	0.511	0.249	0.118	0.130	0.184	nan	0.174	0.333	1.119	1.226	0.515	4.472	0.662	0.352	0.304
10833	chr4	141555330	141557074	+	0	NA	Intergenic	Intergenic	10040	NR_030695	320456	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	4.039	2.986	2.392	1.696	2.197	1.283	5.075	4.845	nan	3.022	2.262	3.531	5.136	4.491	4.445	4.700	3.742	nan	0.797	1.158	0.789	1.379	nan	4.984	4.600
2121	chr11	45925697	45942601	+	0	NA	intron (NM_028185, intron 3 of 3)	intron (NM_028185, intron 3 of 3)	10786	NM_028185	72290	Mm.249827	NM_028185	ENSMUSG00000044847	Lsm11	2210404M20Rik|AV079530	U7 snRNP-specific Sm-like protein LSM11	protein-coding	3.989	3.869	1.616	4.297	3.671	2.252	2.176	nan	4.320	5.200	0.999	0.674	4.029	6.036	4.172	nan	3.478	nan	nan	0.974	0.614	nan	nan	0.411	4.635
474	chr1	95601440	95603357	+	0	NA	intron (NM_009183, intron 4 of 4)	intron (NM_009183, intron 4 of 4)	65196	NM_009183	20452	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	1.868	nan	0.613	1.926	2.655	1.905	4.304	2.885	2.184	2.702	3.143	3.306	4.104	4.052	3.254	nan	1.987	2.475	nan	0.443	0.384	nan	0.297	0.722	2.158
13946	chr7	151748297	151750997	+	0	NA	Intergenic	Intergenic	6434812	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	3.416	nan	0.574	nan	4.060	2.515	6.478	10.099	nan	2.226	7.955	2.917	3.207	7.010	4.640	3.513	2.489	2.948	2.137	1.400	1.197	1.742	nan	1.378	3.759
3563	chr12	86196018	86197446	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	27391	NR_046081	328136	Mm.312050	NR_046081	ENSMUSG00000097543	Gm805	-	predicted gene 805	ncRNA	4.014	1.717	0.588	2.369	1.201	0.598	1.895	2.179	2.123	2.310	2.064	0.649	3.477	3.234	3.064	3.861	3.703	2.524	0.631	0.809	0.384	0.602	0.302	0.135	5.789
13641	chr7	120188821	120193595	+	0	NA	intron (NM_016669, intron 5 of 7)	intron (NM_016669, intron 5 of 7)	10780	NM_016669	12971	Mm.9114	NM_016669	ENSMUSG00000030905	Crym	-	crystallin, mu	protein-coding	6.505	0.659	0.373	2.844	4.265	1.957	8.319	8.617	4.577	5.140	5.802	1.667	9.209	9.313	7.130	7.675	7.128	6.323	0.772	0.811	0.385	0.927	0.577	0.360	6.408
8324	chr2	69422001	69431676	+	0	NA	intron (NM_001081088, intron 77 of 78)	intron (NM_001081088, intron 77 of 78)	46376	NM_175512	241452	Mm.211655	NM_175512	ENSMUSG00000027068	Dhrs9	C730025I08Rik|Rdh15	dehydrogenase/reductase (SDR family) member 9	protein-coding	6.679	0.490	0.336	2.951	1.635	0.809	5.809	1.778	2.790	5.171	0.343	0.328	7.635	6.059	4.560	6.953	8.261	4.582	0.420	0.654	0.476	0.591	0.394	0.311	9.818
12900	chr7	4121536	4123113	+	0	NA	intron (NM_001305822, intron 1 of 13)	intron (NM_001305822, intron 1 of 13)	-1596	NR_033568	77323	Mm.378791	NR_033568	ENSMUSG00000086155	9430041J12Rik	-	RIKEN cDNA 9430041J12 gene	ncRNA	0.920	0.671	0.355	0.815	0.997	0.504	2.742	6.207	2.882	1.305	6.004	6.203	1.903	1.634	2.549	0.825	0.617	1.670	0.402	0.299	0.384	0.298	0.425	0.328	0.921
13187	chr7	52871154	52873261	+	0	NA	Intergenic	MLT2B1|LTR|ERVL	-856491	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	1.454	1.067	0.390	1.325	0.985	0.682	2.427	2.871	1.078	1.921	0.768	0.422	3.064	5.063	3.969	4.480	2.697	2.411	5.858	2.189	1.032	5.079	2.320	1.617	4.630
7552	chr19	10066827	10068493	+	0	NA	intron (NM_019699, intron 7 of 11)	B3|SINE|B2	26112	NM_021890	60527	Mm.253875	NM_021890	ENSMUSG00000024664	Fads3	AI464531	fatty acid desaturase 3	protein-coding	3.653	2.231	0.813	4.100	1.989	1.553	2.695	3.209	2.014	3.354	1.651	0.804	1.597	4.279	2.815	nan	2.746	3.177	0.660	2.172	1.797	3.430	2.026	1.537	2.871
6024	chr16	33682851	33688323	+	0	NA	intron (NM_175256, intron 1 of 14)	MIR3|SINE|MIR	1121	NM_175256	77446	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629|OTTMUSG00000027315	heart development protein with EGF-like domains 1	protein-coding	5.177	11.583	3.685	9.085	3.021	1.988	2.647	3.705	3.338	5.421	1.411	0.941	2.698	3.774	3.715	5.456	2.635	6.207	3.594	1.549	1.167	2.980	2.784	2.782	6.637
12688	chr6	124426213	124438160	+	0	NA	intron (NM_001346656, intron 16 of 17)	intron (NM_001346656, intron 16 of 17)	-17119	NM_001277805	19305	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1R|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	3.490	nan	0.630	2.154	1.612	0.909	7.392	5.548	2.310	2.553	0.870	0.896	5.755	4.414	6.754	nan	5.856	3.835	0.954	0.570	0.616	0.753	0.670	0.449	4.963
11685	chr5	123212729	123214898	+	0	NA	Intergenic	MT2_Mm|LTR|ERVL	-14377	NM_026000	67151	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	2.637	1.846	1.092	1.960	1.020	1.228	4.793	3.868	1.806	nan	0.369	0.535	2.955	5.266	nan	5.280	5.403	nan	nan	0.489	1.270	0.751	nan	0.555	nan
10646	chr4	132961800	132964706	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	-10842	NM_010208	14191	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	6.328	2.317	0.957	7.540	4.746	3.901	4.059	4.004	4.899	7.002	5.350	2.244	4.099	5.946	4.627	4.798	2.332	6.905	2.502	0.967	1.433	2.882	1.089	1.296	8.261
9497	chr3	92348412	92350693	+	0	NA	Intergenic	Intergenic	-2591	NM_011471	20759	Mm.261596	NM_011471	ENSMUSG00000055030	Sprr2e	-	small proline-rich protein 2E	protein-coding	0.256	0.273	0.419	0.350	0.217	0.068	1.156	2.540	1.774	0.396	5.540	3.935	0.625	1.050	0.976	nan	0.737	0.852	nan	0.313	0.164	0.193	0.372	0.208	0.343
15695	chrX	20193790	20195796	+	0	NA	intron (NM_177353, intron 3 of 16)	intron (NM_177353, intron 3 of 16)	96971	NM_177353	236727	Mm.132983	NM_177353	ENSMUSG00000037341	Slc9a7	A530087D17Rik|NHE7	solute carrier family 9 (sodium/hydrogen exchanger), member 7	protein-coding	5.484	7.960	2.803	5.228	2.976	1.834	4.084	5.430	3.179	4.858	4.185	1.471	4.405	5.702	4.980	5.339	3.298	4.057	3.550	2.283	1.654	4.086	2.906	2.470	6.906
4058	chr13	45485122	45487987	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	-20890	NM_025508	66355	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	9.752	13.296	3.570	7.949	5.958	4.125	6.911	7.558	5.050	9.200	6.164	2.789	6.997	12.099	6.262	8.526	5.403	6.035	5.188	nan	3.471	5.585	3.493	3.317	11.680
2953	chr11	112641604	112646854	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	67127	NR_024085	217294	Mm.297761	NM_146031	ENSMUSG00000041674	BC006965	-	cDNA sequence BC006965	ncRNA	3.234	0.998	0.308	nan	0.199	0.142	7.016	5.107	nan	nan	5.496	1.783	2.712	nan	4.830	4.674	4.922	nan	0.362	0.632	0.794	nan	0.204	0.295	9.315
6947	chr17	87600455	87603594	+	0	NA	Intergenic	Intergenic	-33955	NM_008532	17075	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	5.728	4.741	3.724	5.356	5.422	2.778	8.521	3.597	3.559	4.716	6.830	2.733	4.199	4.640	5.693	6.313	3.605	4.539	2.197	2.164	2.968	3.388	1.423	1.100	6.281
6085	chr16	45189340	45190988	+	0	NA	Intergenic	Lx8|LINE|L1	31335	NM_026402	67841	Mm.41775	NM_026402	ENSMUSG00000022663	Atg3	2610016C12Rik|APG3|Apg3l|Atg3l|PC3-96	autophagy related 3	protein-coding	2.920	0.412	0.313	1.739	2.238	0.445	1.518	2.667	1.751	1.789	0.831	0.665	1.926	3.710	1.324	2.065	1.955	3.228	0.465	1.063	0.349	0.538	0.994	0.527	1.356
7549	chr19	10010795	10014074	+	0	NA	intron (NM_001347429, intron 1 of 12)	intron (NM_001347429, intron 1 of 12)	-5760	NM_001347430	74760	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	5.657	9.839	6.253	3.486	4.984	3.079	2.278	3.338	3.344	4.329	5.323	1.799	2.017	3.852	2.364	3.456	2.769	3.310	0.761	1.671	1.633	0.702	1.169	0.553	3.036
6715	chr17	48178203	48181518	+	0	NA	Intergenic	MMERVK10C-int|LTR|ERVK	-12603	NM_178796	328830	Mm.470939	NM_178796	ENSMUSG00000043939	A530064D06Rik	Trem4|pdctrem	RIKEN cDNA A530064D06 gene	protein-coding	6.591	3.703	1.631	5.592	2.897	1.821	16.120	6.733	5.996	9.504	3.362	2.542	9.139	10.566	10.313	12.405	10.209	8.279	3.918	2.484	1.898	3.881	2.733	2.269	12.994
8899	chr2	157960397	157972218	+	0	NA	Intergenic	LTR16C|LTR|ERVL	43053	NM_029282	75425	Mm.29068	NM_029282	ENSMUSG00000027650	Tti1	2610036D13Rik|AI449463	TELO2 interacting protein 1	protein-coding	5.087	2.590	0.861	7.081	3.998	2.172	3.306	5.701	nan	4.488	1.916	1.635	nan	5.074	4.870	5.506	2.235	nan	nan	0.886	0.836	1.273	0.771	0.688	6.263
8745	chr2	145666220	145671302	+	0	NA	Intergenic	Intergenic	-32434	NR_033220	408057	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	7.682	0.993	0.655	4.450	6.063	3.567	8.428	7.035	6.216	8.676	4.822	3.448	6.303	6.273	6.156	5.524	4.704	8.599	nan	0.934	0.700	0.752	1.406	0.819	7.790
13439	chr7	97406276	97408814	+	0	NA	intron (NM_024220, intron 2 of 2)	ID4_|SINE|ID	7542	NM_024220	68197	Mm.334031	NM_024220	ENSMUSG00000030647	Ndufc2	1810004I06Rik|2010300P09Rik|G1|R75094	NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2	protein-coding	2.400	0.705	0.403	3.247	2.821	1.256	3.843	3.215	3.202	4.067	0.626	0.696	4.674	6.451	4.792	3.461	2.905	4.309	nan	0.879	0.557	0.488	0.605	0.332	2.638
13342	chr7	86057239	86060538	+	0	NA	Intergenic	Intergenic	-97406	NM_001105187	546980	Mm.469905	NM_001105187	ENSMUSG00000090774	Vmn2r74	EG546980	vomeronasal 2, receptor 74	protein-coding	6.906	9.868	3.900	8.498	7.354	2.682	6.656	12.727	nan	6.646	6.026	5.711	7.107	9.879	7.703	9.351	6.821	8.147	2.602	2.186	1.454	nan	2.826	1.886	10.887
3489	chr12	80678471	80684865	+	0	NA	3' UTR (NM_026244, exon 7 of 7)	3' UTR (NM_026244, exon 7 of 7)	10798	NR_037995	68354	Mm.46194	NR_037995		Plekhd1os	0610009B14Rik	pleckstrin homology domain containing, family D (with coiled-coil domains) member 1, opposite strand	ncRNA	5.685	1.897	1.181	3.722	4.170	2.659	5.542	3.025	6.764	6.592	4.268	1.619	7.396	6.362	6.034	nan	6.298	6.057	0.834	1.125	0.896	0.795	0.813	0.643	7.191
7910	chr19	59148200	59151071	+	0	NA	Intergenic	Intergenic	20394	NM_009501	22326	Mm.23801	NM_009501	ENSMUSG00000006270	Vax1	-	ventral anterior homeobox 1	protein-coding	5.727	nan	1.195	4.161	1.759	1.301	4.327	7.465	3.170	5.749	1.978	1.375	3.770	5.055	nan	6.896	4.923	6.556	1.990	1.325	1.178	4.292	1.406	1.656	10.241
5488	chr15	82168539	82170659	+	0	NA	intron (NM_033218, intron 1 of 18)	B1F|SINE|Alu	22330	NM_033218	20788	Mm.9002	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	5.364	6.119	2.443	5.698	4.259	3.527	4.565	6.480	3.606	4.706	nan	1.723	4.145	5.084	4.539	4.302	nan	4.637	2.613	1.901	2.135	2.806	2.561	2.219	6.498
4106	chr13	49060297	49067319	+	0	NA	intron (NM_029361, intron 19 of 27)	B1_Mur3|SINE|Alu	84520	NM_029361	75607	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	nan	10.288	2.948	nan	3.974	2.555	5.632	7.920	4.575	9.648	6.294	3.098	5.531	8.031	6.785	7.836	3.804	nan	3.946	nan	2.278	4.311	2.702	2.574	nan
8884	chr2	157026796	157030717	+	0	NA	intron (NM_001164663, intron 10 of 14)	intron (NM_001164663, intron 10 of 14)	-21681	NM_025853	66934	Mm.25410	NM_025853	ENSMUSG00000027635	Dsn1	1700022L09Rik|AW552447	DSN1 homolog, MIS12 kinetochore complex component	protein-coding	8.343	15.485	7.767	7.099	4.430	1.800	4.974	6.458	nan	nan	5.844	3.266	6.199	nan	6.313	8.243	6.137	7.392	nan	3.289	2.450	5.396	3.035	2.811	nan
6069	chr16	38710592	38714551	+	0	NA	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	464	NM_020260	12549	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	8.122	5.144	2.379	6.072	4.813	2.016	2.297	2.309	4.267	8.147	1.562	1.148	4.266	8.191	5.827	7.833	5.207	7.625	1.479	1.655	1.208	1.532	1.762	1.536	10.247
14016	chr8	11966757	11972149	+	0	NA	Intergenic	Intergenic	128932	NM_029326	75528	Mm.440342	NM_029326	ENSMUSG00000031512	Tex29	1700018L24Rik	testis expressed 29	protein-coding	0.201	0.612	0.270	0.320	0.035	0.069	0.197	0.325	0.222	0.205	0.296	0.139	0.113	0.140	0.262	0.618	0.266	0.390	6.567	4.682	2.645	11.396	4.282	2.395	0.543
4176	chr13	56713554	56716112	+	0	NA	intron (NM_001164042, intron 1 of 6)	IAPEz-int|LTR|ERVK	11165	NM_001164042	17129	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	4.824	2.773	0.817	3.204	1.328	0.576	2.094	1.313	4.159	5.537	8.666	3.169	3.071	3.600	3.505	4.474	2.366	nan	1.046	0.971	0.675	1.669	0.439	0.270	5.778
3628	chr12	100463191	100465627	+	0	NA	intron (NM_001033213, intron 4 of 19)	MERVL-int|LTR|ERVL	56413	NM_001033213	104718	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	3.712	1.302	0.903	2.469	1.130	0.518	0.978	0.869	1.320	1.875	1.299	0.455	0.811	1.753	1.691	2.904	1.624	2.111	2.148	1.198	0.661	1.711	3.294	1.934	3.487
7262	chr18	56874145	56876582	+	0	NA	intron (NM_177115, intron 1 of 4)	MTD|LTR|ERVL-MaLR	50185	NM_177115	320253	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	6.549	7.377	3.312	3.544	2.245	2.098	3.177	6.638	3.774	3.157	2.172	2.356	6.132	3.541	4.032	5.587	6.235	4.981	4.697	3.582	1.692	4.783	4.977	3.539	5.673
7557	chr19	10129056	10139443	+	0	NA	Intergenic	Intergenic	-32746	NM_019699	56473	Mm.38901	NM_019699	ENSMUSG00000024665	Fads2	2900042M13Rik|Fadsd2	fatty acid desaturase 2	protein-coding	4.189	1.551	0.520	3.989	1.874	0.924	6.548	6.671	4.203	4.591	2.172	1.579	4.985	7.200	6.385	8.112	5.934	6.914	0.513	0.589	0.392	0.981	0.605	0.264	8.945
5632	chr15	98981676	98985125	+	0	NA	Intergenic	Intergenic	-2565	NR_045991	75951	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	6.125	1.137	0.454	2.098	3.529	2.533	6.033	7.832	2.986	2.768	4.150	3.710	10.104	5.981	4.137	nan	9.170	5.093	1.976	1.843	1.404	2.114	2.214	2.049	4.804
14554	chr8	108691998	108694081	+	0	NA	Intergenic	Intergenic	-21605	NM_007496	11906	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	9.239	10.828	4.445	6.112	5.099	2.557	6.952	11.153	3.588	6.801	3.755	3.298	7.014	9.174	7.205	9.833	11.579	6.435	5.533	7.859	5.738	8.133	7.436	6.808	12.249
2418	chr11	72183835	72184655	+	0	NA	intron (NM_028963, intron 7 of 18)	intron (NM_028963, intron 7 of 18)	19126	NM_028963	74477	Mm.289697	NM_028963	ENSMUSG00000020807	4933427D14Rik	C85113|Kiaa0753|MNR	RIKEN cDNA 4933427D14 gene	protein-coding	2.126	0.424	0.512	2.591	4.157	3.564	1.464	1.595	1.752	2.239	0.962	1.207	0.949	3.692	1.857	1.534	1.261	0.947	0.516	0.899	0.256	0.678	nan	0.789	1.656
13482	chr7	106550613	106552254	+	0	NA	Intergenic	Intergenic	93212	NM_001277179	434223	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	1.664	0.917	0.504	2.672	2.470	1.247	1.477	2.852	1.137	1.894	2.124	1.225	0.997	4.266	1.892	nan	0.904	2.113	nan	0.476	0.558	1.350	0.672	0.409	2.911
10681	chr4	134305703	134310886	+	0	NA	Intergenic	Intergenic	-6826	NM_001039048	433766	Mm.331961	NM_001039048	ENSMUSG00000028834	Trim63	MuRF1|RF1|Rnf28	tripartite motif-containing 63	protein-coding	2.928	4.828	0.856	2.521	0.784	0.281	2.956	3.863	nan	2.032	3.751	3.411	2.234	2.340	3.004	2.507	0.877	nan	5.960	1.496	1.213	4.708	nan	2.239	2.985
305	chr1	74355876	74356892	+	0	NA	Intergenic	Intergenic	-5724	NM_001033345	241112	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	5.372	1.283	0.797	5.744	2.844	2.583	3.280	3.430	3.882	3.341	1.268	2.771	3.280	3.259	2.565	4.168	1.864	5.005	1.142	nan	1.236	0.956	nan	1.460	2.351
15268	chr9	70709946	70711733	+	0	NA	intron (NM_007399, intron 2 of 15)	ORR1E|LTR|ERVL-MaLR	31857	NM_007399	11487	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	5.548	0.987	0.854	4.100	2.159	1.158	2.815	3.525	3.710	3.933	3.995	3.435	1.489	3.133	3.210	3.642	1.808	3.865	2.984	1.492	1.013	3.450	3.843	2.574	3.160
11475	chr5	99652494	99654982	+	0	NA	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	75322	NR_030692	319818	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	3.150	0.969	0.660	2.491	1.857	0.550	5.562	1.814	4.032	4.011	2.371	1.670	4.370	5.329	6.214	5.172	2.905	6.363	1.092	0.375	0.356	0.482	0.262	0.182	3.795
8584	chr2	119818945	119828991	+	0	NA	Intergenic	B4|SINE|B4	24454	NM_019392	22174	Mm.2901	NM_019392	ENSMUSG00000027298	Tyro3	AI323366|Brt|Dtk|Etk-2|Rse|Sky|TK19-2|Tif|etk2/tyro3|tk19-1	TYRO3 protein tyrosine kinase 3	protein-coding	5.408	1.881	1.127	3.837	2.657	1.449	3.372	4.488	4.049	6.054	1.579	0.861	nan	6.073	4.475	nan	5.518	6.028	0.779	0.861	0.464	0.780	0.434	0.482	7.344
15174	chr9	62686199	62687527	+	0	NA	intron (NM_176922, intron 1 of 29)	ID_B1|SINE|B4	9008	NM_176922	319480	Mm.34883	NM_176922	ENSMUSG00000032243	Itga11	4732459H24Rik	integrin alpha 11	protein-coding	8.413	10.297	4.124	9.853	4.460	5.033	8.200	7.528	5.078	11.037	5.559	2.740	7.193	9.092	9.228	10.108	4.862	8.967	7.585	5.025	6.510	9.125	8.454	7.936	13.521
928	chr1	180971411	180973081	+	0	NA	intron (NM_144794, intron 20 of 22)	intron (NM_144794, intron 20 of 22)	29728	NM_144794	208795	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	2.185	1.856	0.621	1.616	0.847		2.509	1.282	1.623	2.135	7.269	1.399	3.114	4.204	2.646	3.449	1.638	1.895	1.220	0.400	0.179	1.514	0.543	0.294	5.755
7274	chr18	58119943	58125695	+	0	NA	intron (NM_010181, intron 8 of 64)	intron (NM_010181, intron 8 of 64)	87107	NM_010181	14119	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding	6.374	nan	0.453	nan	7.165	5.443	8.727	nan	5.111	8.046	1.027	1.067	9.513	10.169	6.273	7.519	7.820	nan	nan	1.151	1.139	nan	1.087	1.246	8.936
15129	chr9	57819355	57823346	+	0	NA	intron (NM_019689, intron 1 of 7)	RSINE1|SINE|B4	12884	NM_019689	56380	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	2.431	15.079	5.579	3.651	1.304	0.568	1.402	nan	2.768	1.686	2.043	2.618	1.305	1.739	1.710	1.899	0.974	2.886	1.321	0.988	0.679	1.348	1.111	0.683	2.200
8889	chr2	157268951	157279794	+	0	NA	intron (NM_001039557, intron 1 of 24)	intron (NM_001039557, intron 1 of 24)	-4726	NM_019642	20014	Mm.22130	NM_019642	ENSMUSG00000027642	Rpn2	1300012C06Rik|AV261018|Rpn-2	ribophorin II	protein-coding	nan	1.425	0.656	3.380	6.455	4.505	5.184	6.297	nan	nan	4.263	2.565	nan	nan	4.915	6.608	3.850	nan	nan	0.949	1.023	0.759	0.694	0.710	nan
1644	chr10	94937414	94938664	+	0	NA	intron (NM_018797, intron 1 of 30)	intron (NM_018797, intron 1 of 30)	6539	NM_018797	54712	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	5.480	1.372	2.569	1.828	3.338	2.293	3.795	2.260	3.576	3.275	nan	1.080	2.516	4.359	2.661	2.517	3.858	3.924	nan	1.110	1.021	nan	1.343	0.689	2.906
12654	chr6	119366481	119370756	+	0	NA	intron (NM_197985, intron 2 of 7)	intron (NM_197985, intron 2 of 7)	-37852	NM_172492	211187	Mm.121498	NM_172492	ENSMUSG00000055003	Lrtm2	A230084J22|AI841794	leucine-rich repeats and transmembrane domains 2	protein-coding	4.195	0.772	0.766	6.048	2.666	1.627	3.016	5.115	4.639	3.243	1.019	2.337	2.208	nan	3.078	4.292	4.303	3.545	1.733	1.141	1.341	1.204	nan	1.995	2.835
10451	chr4	119573873	119579884	+	0	NA	intron (NM_172699, intron 3 of 12)	MIRb|SINE|MIR	37217	NM_172699	230700	Mm.259227	NM_172699	ENSMUSG00000032998	Foxj3	C330039G02Rik|Fhd6	forkhead box J3	protein-coding	0.447	0.682	0.304	0.710	0.341	0.068	0.283	0.295	0.493	0.480	0.355	0.276	0.229	0.340	0.533	nan	0.340	0.472	5.200	2.263	0.956	5.245	2.662	1.473	0.634
4560	chr14	28041866	28045874	+	0	NA	intron (NM_001347497, intron 14 of 19)	intron (NM_001347497, intron 14 of 19)	421463	NM_177814	238988	Mm.318004	NM_177814	ENSMUSG00000040640	Erc2	6430531D06|CAST|CAST1/ERC2|D14Ertd171e|ELKS2alpha	ELKS/RAB6-interacting/CAST family member 2	protein-coding	3.665	5.946	1.781	6.209	2.188	1.101	1.818	5.385	3.041	2.361	3.066	2.180	1.356	1.968	2.137	2.533	nan	nan	4.837	2.986	1.498	3.614	5.178	3.296	3.317
15663	chrX	7366283	7367613	+	0	NA	Intergenic	L1MEd|LINE|L1	8882	NM_019461	54651	Mm.483107	NM_019461	ENSMUSG00000046269	Usp27x	Sfc11|Usp27	ubiquitin specific peptidase 27, X chromosome	protein-coding	6.915	6.438	3.060	5.472	3.863	1.214	3.996	4.250	4.985	4.812	4.724	3.040	4.545	7.084	4.889	4.837	6.212	5.594	5.118	6.158	2.257	4.388	4.782	3.879	4.751
4276	chr13	89791370	89793758	+	0	NA	Intergenic	Intergenic	-50052	NM_001134475	13003	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	4.605	0.869	0.492	3.004	1.722	0.880	4.329	3.234	4.029	4.601	0.633	0.703	7.154	6.356	6.138	4.489	3.152	5.518	1.832	1.483	0.417	1.382	0.845	0.627	3.103
14276	chr8	71570013	71575638	+	0	NA	intron (NM_011977, intron 3 of 13)	ID_B1|SINE|B4	3898	NM_011977	26457	Mm.38165	NM_011977	ENSMUSG00000031808	Slc27a1	FATP1|Fatp	solute carrier family 27 (fatty acid transporter), member 1	protein-coding	1.147	0.517	0.458	1.063	1.015	0.510	0.361	1.396	1.462	1.661	0.785	1.094	0.747	1.298	0.825	2.061	1.400	1.517	nan	2.488	1.694	6.726	1.817	1.069	nan
8509	chr2	104198982	104201397	+	0	NA	intron (NM_001033347, intron 15 of 20)	intron (NM_001033347, intron 15 of 20)	77420	NM_026634	68243	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding	4.021	0.677	0.375	1.101	1.162	0.378	4.462	6.590	1.556	1.411	0.214	0.504	4.365	2.505	5.227	6.225	5.774	4.413	3.142	2.154	0.676	4.457	1.578	0.939	5.159
4815	chr14	70361584	70367601	+	0	NA	Intergenic	L1_Mus3|LINE|L1	-13168	NM_001135151	213053	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	1.186	1.212	0.650	0.351	0.142	0.120	0.297	0.793	0.382	0.534	0.992	0.895	0.214	0.247	0.337	0.818	0.330	0.503	4.210	nan	1.604	5.968	2.500	1.734	0.705
4076	chr13	46821764	46824041	+	0	NA	intron (NM_010617, intron 9 of 37)	(CA)n|Simple_repeat|Simple_repeat	-95053	NM_175749	218210	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	8.531	16.850	7.465	9.471	7.177	6.182	8.293	7.475	4.547	11.950	6.175	4.333	6.762	8.958	8.044	9.595	5.592	8.968	6.098	nan	6.440	7.461	4.836	6.993	13.669
9545	chr3	95775170	95778972	+	0	NA	intron (NM_001081293, intron 7 of 10)	RSINE1|SINE|B4	-22094	NM_001163618	71807	Mm.271754	NM_027931	ENSMUSG00000028107	Tars2	2610024N01Rik|AI429208|Tarsl1	threonyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding	2.304	15.094	9.041	2.439	1.190	1.042	1.004	0.671	1.659	1.668	nan	0.694	0.873	1.249	1.442	nan	1.326	1.567	0.780	1.214	1.100	0.598	0.358	0.694	1.784
281	chr1	72460808	72463331	+	0	NA	intron (NM_001045533, intron 1 of 3)	intron (NM_001045533, intron 1 of 3)	74495	NM_001045533	381270	Mm.337023	NM_001045533	ENSMUSG00000039372	March4	BC056494|mKIAA1399	membrane-associated ring finger (C3HC4) 4	protein-coding	1.450	0.679	0.551	0.792	0.510	0.184	0.517	1.844	1.260	0.706	6.379	4.316	0.751	nan	0.794	1.501	nan	nan	1.953	2.350	0.676	3.796	1.780	0.494	0.969
9790	chr3	126345368	126348153	+	0	NA	Intergenic	B3|SINE|B2	-17092	NM_173451	271970	Mm.317021	NM_173451	ENSMUSG00000046561	Arsj	9330196J05Rik|D830047F08	arylsulfatase J	protein-coding	2.836	0.700	0.500	2.624	3.165	1.584	6.306	4.774	3.279	2.358	1.929	2.133	5.085	5.488	3.968	3.669	3.549	5.517	5.434	1.982	1.426	2.008	5.990	4.390	3.055
11947	chr5	145926930	145929337	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-48279	NM_007818	13112	Mm.332844	NM_007818	ENSMUSG00000056035	Cyp3a11	AI256190|Cyp3a|IIIAm1|Pcn	cytochrome P450, family 3, subfamily a, polypeptide 11	protein-coding	7.507	10.222	3.574	8.567	4.401	3.371	7.385	6.756	nan	6.786	5.990	3.450	5.020	8.017	7.791	7.841	4.897	8.270	5.028	3.006	3.745	4.657	4.404	4.941	9.560
3832	chr13	8277392	8278683	+	0	NA	intron (NR_110345, intron 1 of 10)	intron (NR_110345, intron 1 of 10)	75171	NM_052977	94191	Mm.425794	NM_052977	ENSMUSG00000052551	Adarb2	Adar3|RED2	adenosine deaminase, RNA-specific, B2	protein-coding	4.316	0.540	0.102	0.492		0.284	4.347	1.057	1.710	0.903	0.369	0.140	2.987	3.653	4.636	2.463	5.077	3.814	0.736	0.621	0.167	0.604	0.387	0.311	2.836
3412	chr12	72114898	72118831	+	0	NA	intron (NM_028687, intron 14 of 20)	intron (NM_028687, intron 14 of 20)	31025	NM_024205	104771	Mm.258935	NM_024205	ENSMUSG00000005078	Jkamp	1200003C05Rik|2310047L11Rik|Jamp	JNK1/MAPK8-associated membrane protein	protein-coding	9.517	11.589	3.466	9.722	3.656	3.041	8.029	6.572	4.408	11.269	5.116	2.898	7.750	8.958	9.774	10.565	7.459	7.551	3.765	1.614	2.534	4.139	2.095	3.723	16.713
4928	chr14	102232155	102244194	+	0	NA	Intergenic	Intergenic	397551	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	7.216	nan	1.374	5.783	5.240	2.657	6.233	9.169	7.554	7.614	6.615	3.975	8.790	11.645	8.252	8.567	4.544	10.529	5.184	2.242	1.187	2.940	5.060	3.059	nan
7382	chr18	74717346	74718778	+	0	NA	intron (NM_201600, intron 26 of 38)	intron (NM_201600, intron 26 of 38)	60393	NR_028560	100217466		NR_028560		Scarna17	MBII-119	small Cajal body-specific RNA 17	ncRNA	3.230	nan	0.180	3.207	2.237	0.817	1.585	5.781	2.431	2.664	1.832	1.399	3.964	3.668	3.431	4.208	2.072	4.397	1.713	nan	0.135	2.555	0.811	0.385	3.750
9563	chr3	96377210	96384696	+	0	NA	Intergenic	B1_Mur2|SINE|Alu	33880	NR_001579	21748		NR_001579	ENSMUSG00000064796	Terc	mTER|mTR	telomerase RNA component	ncRNA	7.297	8.851	3.780	8.999	7.633	5.514	5.956	5.890	5.695	6.197	nan	2.734	5.967	8.386	6.740	6.308	5.220	7.213	3.098	2.656	2.530	2.590	3.005	2.229	9.095
10671	chr4	134031963	134034368	+	0	NA	Intergenic	B3|SINE|B2	-14349	NM_145833	83557	Mm.302567	NM_145833	ENSMUSG00000050966	Lin28a	AL024421|ENSMUSG00000070700|Gm10299|Lin-28|Lin28|Tex17|lin-28A	lin-28 homolog A (C. elegans)	protein-coding	nan	1.393	0.588	3.599	2.496	1.818	3.630	2.728	nan	2.329	1.489	0.893	3.473	5.689	3.908	4.502	1.834	2.944	1.720	0.873	1.009	2.417	nan	1.021	4.726
10427	chr4	117899791	117910630	+	0	NA	exon (NM_146152, exon 4 of 20)	exon (NM_146152, exon 4 of 20)	9789	NM_146152	230673	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	2.948	0.565	0.324	2.722	3.651	1.750	3.999	3.417	2.884	3.876	2.131	0.956	3.515	6.490	3.964	4.496	1.616	4.780	0.860	0.842	0.598	1.035	0.766	0.464	5.073
8376	chr2	75598444	75622091	+	0	NA	Intergenic	RMER20B|LTR|ERVK	-48992	NM_146130	229279	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	11.033	1.753	1.245	5.111	5.521	3.458	8.865	10.939	8.152	9.288	5.191	3.970	10.398	11.468	nan	nan	11.411	10.018	4.457	2.262	1.785	2.036	3.690	3.009	nan
9665	chr3	105837147	105840261	+	0	NA	Intergenic	Intergenic	23137	NR_045845	433637	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	1.750	0.488	0.543	1.004	3.958	3.708	3.583	1.126	1.347	1.114	0.296	0.791	2.512	2.209	nan	1.480	3.150	1.285	0.683	1.089	1.158	0.238	0.583	0.777	1.145
13793	chr7	135888061	135889986	+	0	NA	Intergenic	Intergenic	-172644	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	7.022	5.870	2.500	7.231	5.014	2.860	5.459	8.566	nan	4.817	3.921	1.988	4.719	6.153	5.746	6.561	3.771	5.430	2.689	1.752	1.501	3.321	3.120	2.755	9.301
11184	chr5	36894840	36901854	+	0	NA	intron (NM_172994, intron 1 of 8)	intron (NM_172994, intron 1 of 8)	-21468	NR_045505	71054	Mm.444807	NR_045505	ENSMUSG00000087487	Ppp2r2cos	4933401P06Rik	protein phosphatase 2, regulatory subunit B, gamma, opposite strand	ncRNA	4.915	4.701	2.256	3.587	3.941	3.351	5.002	4.921	4.034	4.072	3.458	1.992	5.064	6.379	nan	4.605	4.448	4.275	1.731	1.597	1.747	1.322	1.138	0.936	4.051
9993	chr4	40760814	40773013	+	0	NA	Intergenic	RLTR24|LTR|ERV1	-9028	NM_021535	74255	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	4.574	2.048	0.947	3.941	3.394	1.840	4.252	6.269	5.280	4.868	6.635	3.028	5.023	6.715	5.051	5.833	3.513	5.225	2.782	1.170	0.807	1.697	1.942	1.278	5.041
6485	chr17	28646467	28663136	+	0	NA	intron (NM_001290320, intron 9 of 19)	intron (NM_001290320, intron 9 of 19)	-32347	NM_016795	20815	Mm.15252	NM_016795	ENSMUSG00000004865	Srpk1	AU017960	serine/arginine-rich protein specific kinase 1	protein-coding	6.455	8.969	3.558	10.650	7.448	5.107	3.731	8.318	5.568	7.440	3.823	3.224	3.385	8.950	3.368	nan	2.540	5.471	1.933	1.794	1.997	3.721	2.302	2.718	3.746
13927	chr7	150870974	150872072	+	0	NA	Intergenic	Intergenic	5556688	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	4.180	nan	1.200	4.164	4.114	3.075	3.856	8.479	3.027	4.754	4.981	3.904	5.547	5.836	5.917	4.879	3.775	5.240	1.307	0.895	0.862	0.917	nan	0.737	6.585
14909	chr9	21586603	21597906	+	0	NA	promoter-TSS (NM_178619)	promoter-TSS (NM_178619)	-468	NM_178619	69773	Mm.39704	NM_178619	ENSMUSG00000048429	Timm29	1810026J23Rik	translocase of inner mitochondrial membrane 29	protein-coding	6.073	1.231	0.856	6.012	6.068	4.769	4.665	4.496	6.436	7.916	1.529	1.490	6.425	8.648	5.283	7.349	5.500	7.976	1.448	2.018	2.362	1.621	1.390	1.363	8.686
5150	chr15	38536408	38539990	+	0	NA	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	-18933	NM_018745	54375	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	7.299	1.398	0.902	3.098	1.969	0.840	8.908	7.925	6.057	8.382	3.062	1.621	12.309	8.113	8.201	9.299	7.801	7.583	0.899	0.375	0.260	nan	0.462	0.172	8.527
748	chr1	154748491	154752284	+	0	NA	Intergenic	Intergenic	-24467	NM_009782	12290	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	10.884	10.253	5.205	8.634	5.910	3.863	8.529	6.632	nan	9.453	4.876	4.552	6.921	8.266	6.339	10.218	7.258	6.980	nan	4.699	4.249	5.907	5.662	5.755	10.061
15120	chr9	57436869	57438081	+	0	NA	5' UTR (NM_176831, exon 2 of 7)	5' UTR (NM_176831, exon 2 of 7)	2639	NM_176831	66812	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	6.515	12.543	1.742	10.530	2.063	1.583	6.812	8.173	4.210	9.347	5.782	2.822	4.910	7.553	8.218	10.433	3.092	8.188	4.196	1.385	2.575	6.798	2.414	2.200	18.210
1655	chr10	95402168	95404477	+	0	NA	Intergenic	URR1B|DNA|hAT-Charlie	11961	NM_001168657	216233	Mm.474283	NM_007706	ENSMUSG00000020027	Socs2	8030460M17|AI527257|AW108012|CIS2|Cish2|D130043N08Rik|JAB|SOCS-2|SSI-2|hg	suppressor of cytokine signaling 2	protein-coding	7.250	9.420	1.761	8.746	3.336	2.089	3.820	5.081	4.272	9.638	nan	3.061	4.503	6.313	7.598	7.677	3.980	7.037	4.013	1.582	2.392	nan	1.859	2.900	11.162
5077	chr15	25832402	25842234	+	0	NA	Intergenic	Intergenic	-5980	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	1.125	11.457	5.281	1.321	0.633	0.293	0.705	1.236	0.884	0.794	0.524	0.425	0.504	0.620	0.957	1.187	0.844	1.204	0.624	0.565	0.320	0.764	0.404	0.199	1.022
1943	chr11	6167052	6168354	+	0	NA	intron (NM_173748, intron 2 of 5)	intron (NM_173748, intron 2 of 5)	5628	NR_029471	100042173	Mm.441799	NR_029471		Rps15a-ps6	Gm11968|OTTMUSG00000005107	ribosomal protein S15A, pseudogene 6	pseudo	8.955	12.231	3.648	10.054	3.094	2.111	6.175	6.698	5.138	7.277	5.660	4.347	7.117	7.575	9.035	11.417	5.279	9.466	4.861	nan	1.966	6.333	1.723	2.507	11.432
14097	chr8	26830229	26832016	+	0	NA	Intergenic	Intergenic	-6699	NR_045904	72316	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	8.714	8.001	2.376	8.980	5.857	3.754	7.273	11.508	6.317	8.999	4.838	3.954	9.176	8.630	9.781	11.876	5.998	8.950	4.369	3.697	4.409	9.748	3.790	3.873	12.772
10101	chr4	55542461	55547668	+	0	NA	Intergenic	Intergenic	-12589	NM_010637	16600	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	5.348	nan	1.119	9.326	3.474	2.285	4.449	5.772	3.732	5.788	4.785	3.700	3.402	5.255	5.880	5.793	2.100	6.164	nan	1.407	1.236	4.274	1.685	1.771	6.666
11269	chr5	65089815	65096138	+	0	NA	Intergenic	Lx7|LINE|L1	-14592	NM_001347355	71778	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	6.494	1.392	0.675	5.514	3.223	1.734	7.228	6.607	6.057	6.808	7.653	4.154	6.711	8.303	6.577	7.425	5.357	7.529	5.306	3.178	2.295	nan	4.731	4.398	7.110
6905	chr17	84381028	84393012	+	0	NA	intron (NM_183021, intron 25 of 37)	intron (NM_183021, intron 25 of 37)	79188	NM_183021	240174	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	7.538	2.100	0.987	3.408	2.546	1.381	10.883	4.513	4.348	5.448	2.720	1.284	6.950	7.658	9.390	12.182	8.410	5.623	1.453	2.043	1.383	2.706	1.100	0.803	14.409
3779	chr12	114335146	114338986	+	0	NA	Intergenic	MusHAL1|LINE|L1	132400	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	nan	6.290	1.984	5.897	2.632	2.794	3.994	3.204	2.542	9.397	3.203	1.911	2.708	4.341	3.699	6.151	3.392	3.929	3.174	2.081	3.622	4.829	2.851	4.138	10.386
5724	chr15	102222843	102231191	+	0	NA	intron (NM_013566, intron 2 of 14)	intron (NM_013566, intron 2 of 14)	4918	NM_013566	16421	Mm.58	NM_013566	ENSMUSG00000001281	Itgb7	Ly69	integrin beta 7	protein-coding	10.830	5.497	3.152	6.302	6.044	5.010	12.770	15.514	6.648	6.520	5.878	4.416	13.261	10.764	8.583	8.147	11.401	7.324	3.368	3.064	3.400	2.208	4.341	4.641	7.653
3747	chr12	112935766	112937212	+	0	NA	intron (NM_025399, intron 4 of 4)	intron (NM_025399, intron 4 of 4)	5653	NM_025399	66174	Mm.7070	NM_025399	ENSMUSG00000002804	Nudt14	1110030M18Rik|UGPPase	nudix (nucleoside diphosphate linked moiety X)-type motif 14	protein-coding	0.666	1.188	0.261	3.201	1.380	0.528	1.406	4.237	3.034	nan	2.595	1.558	2.723	4.616	2.663	2.185	1.231	1.231	0.974	0.750	0.704	1.405	0.851	0.594	2.898
14359	chr8	79422749	79426691	+	0	NA	Intergenic	L1_Rod|LINE|L1	-25252	NM_008539	17125	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	4.127	6.804	1.898	9.119	3.733	2.588	nan	nan	nan	7.050	3.220	2.858	5.034	7.830	6.405	7.995	5.138	6.490	3.271	2.390	3.106	nan	3.138	3.312	10.302
14034	chr8	12924971	12954037	+	0	NA	intron (NM_178076, intron 1 of 30)	intron (NM_178076, intron 1 of 30)	-8437	NR_128567	104797311		NR_128567	ENSMUSG00000105030	Gm38671	Mir9768|mmu-mir-9768	predicted gene, 38671	ncRNA	1.511	1.333	0.703	2.166	0.758	0.368	1.655	2.131	1.437	1.601	0.492	0.836	1.565	1.664	2.684	3.772	1.391	1.800	5.780	3.764	3.070	9.786	4.113	2.982	2.728
6060	chr16	38009114	38015554	+	0	NA	Intergenic	Intergenic	-4989	NR_040565	75175	Mm.399335	NR_040565		4930542C21Rik	-	RIKEN cDNA 4930542C21 gene	ncRNA	5.714	0.670	0.522	2.947	2.437	1.871	6.584	6.609	3.592	4.023	2.167	1.464	6.600	6.868	5.061	7.853	5.837	5.245	2.050	0.961	1.271	1.639	2.130	1.926	7.524
8684	chr2	131955823	131958888	+	0	NA	Intergenic	Intergenic	6318	NM_001278520	26434	Mm.180750	NM_023043	ENSMUSG00000027338	Prnd	AI450264|Dpl|PrPLP|doppel	prion protein dublet	protein-coding	4.969	1.829	1.188	4.614	5.054	3.922	3.398	5.740	3.443	4.188	2.185	3.091	4.872	4.539	4.756	7.079	7.012	4.019	3.923	3.149	3.051	2.946	3.269	3.205	6.227
15814	chrX	136312431	136314291	+	0	NA	Intergenic	Intergenic	43108	NM_001110234	12070	Mm.90787	NM_009750	ENSMUSG00000046432	Bex3	AL033356|DXWsu67e|Gcap27|Nade|Ngfrap1	brain expressed X-linked 3	protein-coding	2.420	0.451	0.136	0.883	1.356	0.685	1.079	1.814	1.318	1.351	2.152	0.525	1.397	3.456	2.283	1.496	1.424	1.453	1.128	0.746	0.348	0.418	1.187	0.775	3.055
7669	chr19	25125572	25128166	+	0	NA	intron (NM_028785, intron 18 of 47)	(TG)n|Simple_repeat|Simple_repeat	-110333	NM_181404	107351	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	3.952	17.690	8.505	nan	1.382	0.370	1.603	1.195	1.873	1.798	nan	0.551	1.866	1.540	1.756	2.272	2.675	1.888	nan	1.659	0.539	0.476	nan	0.545	1.967
9924	chr4	9037134	9038534	+	0	NA	Intergenic	Intergenic	-231483	NM_028940	74438	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	6.592	1.545	0.524	1.568	1.482	0.191	3.567	nan	2.050	2.961	2.813	1.520	4.177	3.776	2.469	3.372	4.088	2.444	1.367	nan	0.848	2.061	0.857	0.623	2.314
5369	chr15	76759249	76760625	+	0	NA	intron (NM_198420, intron 2 of 10)	ORR1E|LTR|ERVL-MaLR	-36092	NM_176828	223665	Mm.291713	NM_145472	ENSMUSG00000033707	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	4.789	nan	0.819	nan	1.719	1.112	3.820	3.611	0.735	2.417	nan	0.444	4.597	5.148	2.192	1.607	3.264	1.581	0.923	0.648	0.925	nan	0.820	0.877	1.468
1018	chr1	191636847	191638850	+	0	NA	Intergenic	Intergenic	62212	NM_001306204	77065	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	5.536	1.053	0.333	1.253	2.366	1.203	2.256	3.178	2.113	2.564	4.203	1.356	1.683	2.165	2.000	5.473	2.657	3.555	1.553	1.044	0.979	0.814	1.606	1.368	3.853
12043	chr6	8458632	8462884	+	0	NA	Intergenic	Intergenic	48403	NR_040452	320312	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	5.228	10.219	2.798	6.253	2.144	1.571	5.715	5.891	3.947	7.960	1.044	1.926	5.332	5.694	7.899	9.053	5.687	6.359	5.948	3.474	2.880	5.349	5.392	4.824	8.316
10575	chr4	129558713	129562373	+	0	NA	intron (NM_001162433, intron 1 of 12)	intron (NM_001162433, intron 1 of 12)	-2171	NM_010693	16818	Mm.293753	NM_010693	ENSMUSG00000000409	Lck	Hck-3|Lsk|Lskt|p56<lck>|p56Lck	lymphocyte protein tyrosine kinase	protein-coding	7.076	4.758	3.867	4.227	3.940	2.857	7.108	6.553	3.547	4.392	6.381	3.408	3.849	6.784	nan	4.933	4.120	3.132	1.524	4.212	3.507	1.405	1.662	1.478	6.030
1125	chr10	18727634	18729591	+	0	NA	intron (NM_001033258, intron 2 of 33)	ORR1B1|LTR|ERVL-MaLR	15146	NM_001033258	215821	Mm.40491	NM_001033258	ENSMUSG00000019852	Arfgef3	9630004D11|B930094H20Rik|BIG3|D10Bwg1379e|mKIAA1244	ARFGEF family member 3	protein-coding	7.335	8.015	3.691	7.939	3.455	1.672	3.195	4.911	5.691	4.742	4.186	3.579	4.716	5.036	4.660	7.010	4.236	8.210	1.004	0.985	0.785	1.300	0.375	0.083	5.295
9765	chr3	121902289	121907051	+	0	NA	Intergenic	Intergenic	-48656	NM_172525	214137	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	2.189	1.628	0.709	1.590	1.134	0.650	2.270	3.029	1.202	nan	7.716	3.203	2.129	1.602	1.313	nan	1.289	1.946	1.376	1.967	1.232	1.726	nan	1.116	nan
9102	chr2	179939067	179943732	+	0	NA	intron (NM_001081092, intron 1 of 14)	intron (NM_001081092, intron 1 of 14)	35247	NM_001081092	228980	Mm.235542	NM_001081092	ENSMUSG00000039117	Taf4	135kDa|AI450312|TAFII130|TAFII135|Taf2c1|Taf4a	TATA-box binding protein associated factor 4	protein-coding	1.026	0.854	0.451	1.369	1.074	0.594	1.040	1.568	0.884	1.001	0.743	0.501	0.625	1.037	1.326	nan	1.013	nan	1.763	1.594	1.613	4.173	2.079	1.469	1.823
741	chr1	153522931	153526097	+	0	NA	intron (NM_028749, intron 5 of 11)	intron (NM_028749, intron 5 of 11)	25200	NM_028749	74091	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	7.824	0.646	0.330	4.044	3.744	2.121	3.307	3.250	nan	4.652	3.829	2.053	5.452	6.063	3.892	nan	4.437	5.581	nan	0.628	0.651	0.659	nan	0.474	4.399
15556	chr9	116261405	116263429	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-87054	NM_009371	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	3.492	1.086	0.700	4.212	3.141	1.490	0.659	2.431	2.661	4.173	1.131	0.884	1.461	4.863	1.503	1.651	1.235	3.171	0.649	0.666	0.605	0.806	nan	0.142	2.847
2806	chr11	101130016	101132644	+	0	NA	Intergenic	PB1D10|SINE|Alu	11199	NM_134024	103733	Mm.479145	NM_134024	ENSMUSG00000035198	Tubg1	1500010O08Rik|AI451582|AI503389|Tubg	tubulin, gamma 1	protein-coding	6.844	nan	0.556	1.702	2.322	1.117	6.511	4.966	1.870	2.785	0.911	0.943	4.751	4.772	4.365	4.736	6.035	3.414	3.084	nan	1.216	2.216	4.736	3.750	6.479
9241	chr3	37614360	37617401	+	0	NA	TTS (NR_130163)	TTS (NR_130163)	1967	NR_130161	75947	Mm.109620	NR_130161	ENSMUSG00000085677	4930594O21Rik	-	RIKEN cDNA 4930594O21 gene	ncRNA	3.985	0.796	0.486	2.594	3.477	2.011	6.906	3.827	2.906	3.566	1.552	0.674	6.523	6.821	5.565	6.211	4.935	5.358	nan	0.677	0.887	nan	1.313	1.223	5.502
7922	chr2	3249339	3250849	+	0	NA	Intergenic	Intergenic	-34118	NM_008708	18108	Mm.65021	NM_008708	ENSMUSG00000026643	Nmt2	A930001K02Rik|AI605445|AU044698|hNMT-2	N-myristoyltransferase 2	protein-coding	7.709	6.875	3.002	6.811	4.198	4.414	7.006	8.823	4.814	5.814	3.993	3.111	7.045	7.437	7.686	11.867	9.961	7.589	5.522	3.247	3.872	5.877	4.785	5.062	11.656
7439	chr18	83078785	83087549	+	0	NA	Intergenic	(TTTC)n|Simple_repeat|Simple_repeat	-162607	NR_033307	75853	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	6.965	5.270	2.153	5.062	4.224	2.573	8.436	8.161	3.880	6.453	5.732	3.088	5.064	8.700	6.535	7.847	5.592	5.394	3.069	2.699	2.617	4.266	3.155	2.903	8.033
3032	chr11	117186438	117189212	+	0	NA	Intergenic	Intergenic	-11836	NM_001113486	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	5.384	11.800	5.459	3.757	2.918	1.638	nan	2.755	1.883	2.365	2.183	1.118	1.445	2.332	2.014	2.305	1.900	nan	1.871	3.756	2.223	1.822	1.501	0.860	4.433
11791	chr5	135643696	135647562	+	0	NA	3' UTR (NM_146002, exon 4 of 4)	3' UTR (NM_146002, exon 4 of 4)	12975	NM_146002	215160	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	5.849	13.410	7.329	5.670	4.371	3.144	5.511	5.243	3.944	5.893	4.513	2.582	4.155	6.043	5.340	5.782	3.927	5.289	4.600	3.200	3.756	3.815	nan	4.315	7.086
8733	chr2	143738682	143745899	+	0	NA	intron (NM_008792, intron 5 of 11)	intron (NM_008792, intron 5 of 11)	46896	NR_040625	378775	Mm.441313	NR_040625	ENSMUSG00000087115	Pcsk2os2	9430032N09Rik|Gm12360|OTTMUSG00000006467	proprotein convertase subtilisin/kexin type 2, opposite strand 2	ncRNA	7.659	3.525	1.759	6.229	5.211	3.639	7.026	7.383	6.452	7.316	4.414	4.234	6.891	6.967	7.183	8.017	6.383	7.977	nan	1.896	1.815	4.004	2.764	2.682	9.708
3880	chr13	23646432	23649002	+	0	NA	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-25159	NM_015787	50709	Mm.170587	NM_015787	ENSMUSG00000051627	Hist1h1e	H1-4|H1.4|H1e|H1f4|H1s-4|H1var2	histone cluster 1, H1e	protein-coding	7.547	10.305	3.480	7.253	2.867	1.516	3.319	4.840	5.621	5.479	5.219	3.004	4.750	7.708	8.554	9.516	4.402	9.704	3.232	1.131	0.858	3.046	0.953	0.988	9.562
3192	chr12	15707710	15708883	+	0	NA	Intergenic	Intergenic	92805	NR_105809	102465204		NR_105809	ENSMUSG00000098480	Mir6387	Gm27281|mmu-mir-6387	microRNA 6387	ncRNA	3.178	0.896	0.576	0.713	3.807	1.660	3.682	1.372	1.563	1.531	1.210	1.000	1.526	3.808	2.017	3.249	4.174	2.251	0.421	1.934	0.402	0.687	0.547	1.057	2.032
4294	chr13	95999621	96003493	+	0	NA	intron (NM_029210, intron 4 of 12)	intron (NM_029210, intron 4 of 12)	-109635	NM_027711	544963	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	6.360	0.442	0.456	4.184	5.047	2.030	6.483	7.268	6.263	7.951	0.558	0.739	8.365	9.665	7.734	8.736	5.676	8.101	0.791	0.808	0.352	0.739	0.839	0.638	6.403
10498	chr4	123310572	123312362	+	0	NA	Intergenic	B3|SINE|B2	12212	NM_022033	64059	Mm.270287	NM_022033	ENSMUSG00000076436	Oxct2a	Oxct|Oxct2|Scot|Scot-t1	3-oxoacid CoA transferase 2A	protein-coding	5.566	1.034	1.258	4.999	2.822	0.433	1.808	2.508	3.483	3.603	4.049	2.092	1.278	3.045	2.304	3.015	2.271	4.871	1.123	1.874	0.809	1.468	1.447	0.854	3.575
5159	chr15	44258302	44262016	+	0	NA	Intergenic	Intergenic	64024	NM_013696	22045	Mm.309350	NM_013696	ENSMUSG00000038760	Trhr	TRH-R1	thyrotropin releasing hormone receptor	protein-coding	6.684	5.848	1.687	5.599	2.994	1.543	4.847	7.600	4.448	4.697	3.140	2.306	5.982	5.885	5.899	6.341	4.132	7.846	3.225	1.474	1.309	3.686	1.877	1.548	6.749
13522	chr7	108525830	108528973	+	0	NA	Intergenic	Intergenic	-3453	NM_146739	258734	Mm.377664	NM_146739	ENSMUSG00000058014	Olfr502	MOR204-8	olfactory receptor 502	protein-coding	11.724	8.031	3.332	7.961	7.047	3.694	10.599	14.827	5.857	8.305	3.826	4.347	9.629	12.065	9.849	9.420	7.887	nan	5.041	4.389	2.802	5.728	6.427	4.595	11.930
1545	chr10	83877895	83882140	+	0	NA	Intergenic	Intergenic	157152	NM_001145198	69784	Mm.271188	NM_001145198	ENSMUSG00000087651	1500009L16Rik	2700050C19Rik|OCC-1	RIKEN cDNA 1500009L16 gene	protein-coding	nan	1.067	0.277	1.866	1.258	0.581	1.969	0.659	0.908	0.926	0.564	0.539	0.674	nan	1.002	1.017	1.334	nan	1.400	1.726	1.502	nan	nan	0.525	1.571
8352	chr2	72833118	72835949	+	0	NA	Intergenic	Intergenic	-20816	NR_102349	76218	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	10.018	6.724	2.708	5.210	3.059	2.187	6.410	9.156	6.260	6.674	10.128	5.249	7.198	6.526	6.181	9.999	9.068	8.557	6.769	5.528	4.376	7.077	5.048	3.554	9.553
6468	chr17	28149428	28152380	+	0	NA	intron (NM_001004366, intron 1 of 21)	intron (NM_001004366, intron 1 of 21)	8378	NM_001004366	268935	Mm.258491	NM_001004366	ENSMUSG00000038677	Scube3	CEGF3|D030038I21Rik	signal peptide, CUB domain, EGF-like 3	protein-coding	8.303	4.746	1.790	7.551	4.899	2.382	9.231	5.837	6.047	6.185	6.834	3.413	6.066	7.519	7.470	9.718	6.613	8.361	0.740	1.606	1.774	1.077	0.729	0.857	10.876
1058	chr1	195275016	195279141	+	0	NA	Intergenic	Intergenic	-100363	NM_007758	12902	Mm.235387	NM_007758	ENSMUSG00000026616	Cr2	C3DR|CD21|CD35|Cr-1|Cr-2|Cr1	complement receptor 2	protein-coding	2.249	0.835	0.476	1.009	0.913	0.446	4.561	1.706	2.087	1.890	0.603	0.923	2.559	2.015	3.513	7.652	4.068	3.030	1.022	0.699	0.407	0.820	nan	1.024	4.401
7561	chr19	10245223	10248679	+	0	NA	3' UTR (NM_198114, exon 20 of 20)	3' UTR (NM_198114, exon 20 of 20)	-6203	NM_001033481	225908	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	6.001	2.159	1.526	2.860	1.197	0.725	4.304	7.260	nan	3.360	6.128	3.256	5.168	4.296	3.343	nan	7.052	5.617	0.707	1.043	1.042	1.453	1.228	1.303	4.591
4989	chr14	122156643	122158276	+	0	NA	intron (NM_080556, intron 16 of 16)	intron (NM_080556, intron 16 of 16)	-24235	NM_029556	69634	Mm.34608	NM_029556	ENSMUSG00000025545	Clybl	0610033J05Rik|2310014M14Rik|AI256068|Clb	citrate lyase beta like	protein-coding	3.007	2.620	1.650	1.971	1.433	0.926	2.826	4.108	3.067	3.467	1.307	0.757	3.820	4.161	4.418	5.185	2.506	3.998	0.981	0.802	0.368	0.649	0.544	0.492	3.830
6192	chr16	90844819	90846559	+	0	NA	intron (NM_001316761, intron 1 of 5)	intron (NM_001316761, intron 1 of 5)	14830	NM_001316761	70967	Mm.253077	NM_027627	ENSMUSG00000039903	Eva1c	1700092M14Rik|4931408A02Rik|Fam176c	eva-1 homolog C (C. elegans)	protein-coding	5.276	nan	0.445	3.256	2.808	0.699	3.126	2.466	3.679	3.621	4.435	1.476	4.765	4.365	3.581	5.747	2.734	nan	1.599	0.684	0.282	nan	0.702	0.587	6.400
10287	chr4	97376021	97385666	+	0	NA	Intergenic	B4A|SINE|B4	-201100	NM_001122952	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.839	nan	0.297	0.921	0.808	0.461	0.460	0.639	nan	nan	0.378	0.279	0.727	1.256	nan	1.511	0.717	1.511	3.315	1.678	0.926	nan	1.936	1.225	0.958
13326	chr7	82695732	82701224	+	0	NA	intron (NM_175317, intron 15 of 19)	intron (NM_175317, intron 15 of 19)	49864	NM_175317	101592	Mm.238020	NM_175317	ENSMUSG00000038563	Efl1	4932434J20Rik|6030468D11Rik|AI451340|AU019507|AU022896|D7Ertd791e|Eftud1	elongation factor like GPTase 1	protein-coding	3.759	1.093	0.368	4.022	2.654	1.315	2.392	3.804	4.085	3.924	0.957	1.147	4.215	3.840	3.228	2.917	2.716	6.608	1.350	1.118	1.017	1.566	0.833	1.006	nan
5417	chr15	78869691	78871663	+	0	NA	Intergenic	ORR1C2|LTR|ERVL-MaLR	-6513	NM_145929	106039	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	4.785	nan	0.496	3.250	0.615	0.377	7.152	9.963	2.983	nan	3.746	0.812	9.885	5.952	7.258	5.072	6.279	4.377	2.606	1.399	1.718	3.598	2.814	2.254	8.162
11054	chr5	22892197	22894053	+	0	NA	intron (NM_001081231, intron 1 of 3)	intron (NM_001081231, intron 1 of 3)	-146241	NR_027362	330052	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	5.269	10.739	3.746	5.786	2.887	1.477	3.648	4.421	3.403	5.088	2.823	2.625	3.613	4.753	4.715	4.544	3.006	3.969	4.935	1.845	1.074	4.826	2.610	1.157	4.129
8306	chr2	65402672	65405555	+	0	NA	Intergenic	Intergenic	-39713	NR_105755	102466151		NR_105755	ENSMUSG00000099184	Mir6337	Gm27877|mmu-mir-6337	microRNA 6337	ncRNA	0.994	0.490	0.604	1.027	0.322	0.070	0.776	1.110	0.996	0.591	0.285	0.510	0.731	0.582	1.083	1.354	1.158	1.419	8.487	3.943	1.425	7.335	4.875	2.841	0.807
6211	chr16	92443377	92445304	+	0	NA	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	21829	NM_001081549	54720	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	4.994	nan	1.875	3.530	2.834	1.315	4.030	7.117	2.565	3.591	0.887	1.263	3.170	5.373	4.837	5.725	3.131	5.271	1.438	0.894	0.788	nan	0.507	0.478	6.991
14128	chr8	34926528	34929823	+	0	NA	intron (NM_175091, intron 2 of 26)	Charlie5|DNA|hAT-Charlie	37515	NM_175091	21951	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	5.442	1.153	0.432	3.268	2.380	1.159	3.636	6.980	3.785	3.177	2.767	4.281	5.213	5.511	6.319	8.099	5.399	6.628	0.876	0.676	0.523	0.822	0.632	1.039	6.625
8181	chr2	35137519	35145276	+	0	NA	intron (NM_001290635, intron 5 of 8)	intron (NM_001290635, intron 5 of 8)	9163	NM_001290635	26920	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	4.977	1.046	0.415	4.048	3.500	2.292	4.235	4.267	3.126	4.521	1.614	0.590	5.486	6.713	4.986	6.903	4.981	5.706	0.805	0.873	0.740	1.062	0.559	0.387	8.734
15846	chrX	150128972	150130726	+	0	NA	Intergenic	ETnERV2-int|LTR|ERVK	183515	NM_001101501	333588	Mm.159296	NM_001101501		Gm15104	OTTMUSG00000018998	predicted gene 15104	protein-coding	4.610	1.073	0.449	3.261	1.502	1.096	3.708	3.593	2.365	2.262	0.718	1.307	1.705	1.894	2.181	3.975	3.252	3.265	0.947	0.722	0.419	0.553	0.296	0.334	1.715
3141	chr11	121515832	121517710	+	0	NA	intron (NM_178763, intron 1 of 2)	intron (NM_178763, intron 1 of 2)	2571	NM_178763	319530	Mm.11395	NM_178763	ENSMUSG00000039238	Zfp750	A030007D23Rik|Znf750	zinc finger protein 750	protein-coding	3.525	3.094	1.148	3.378	3.778	2.282	nan	2.727	2.793	2.621	3.267	2.500	1.978	3.662	2.742	3.646	1.629	3.580	1.194	nan	0.914	0.960	0.877	0.733	3.594
1535	chr10	82223151	82227359	+	0	NA	exon (NM_001105557, exon 4 of 4)	exon (NM_001105557, exon 4 of 4)	16020	NM_001105557	237411		NM_172789	ENSMUSG00000062931	Zfp938	B230315N10Rik	zinc finger protein 938	protein-coding	5.754	7.298	2.145	nan	3.642	2.323	4.884	6.849	4.434	8.635	3.464	2.567	5.866	6.376	5.849	6.039	4.499	6.277	5.197	2.708	1.692	5.550	3.865	3.188	9.333
5299	chr15	73300949	73302387	+	0	NA	intron (NM_001130409, intron 11 of 29)	intron (NM_001130409, intron 11 of 29)	-46786	NR_029561	387169		NR_029561	ENSMUSG00000065612	Mir151	Mirn151|mir-151|mmu-mir-151	microRNA 151	ncRNA	4.594	1.204	0.454	2.193	1.044	0.933	6.666	6.439	2.011	1.704	nan	0.897	4.077	3.701	3.687	4.761	nan	3.030	1.065	0.325	0.564	nan	0.869	0.690	6.566
4978	chr14	121636823	121640098	+	0	NA	intron (NM_001347596, intron 13 of 52)	B1_Mus2|SINE|Alu	59957	NM_001347596	105445	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	5.988	0.667	0.313	3.409	3.986	2.521	4.881	6.422	3.808	3.519	0.712	1.398	3.698	7.197	nan	5.671	3.095	6.139	1.801	0.585	0.533	1.251	1.889	0.932	7.304
3775	chr12	114187724	114192009	+	0	NA	Intergenic	Intergenic	279600	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	5.982	2.862	0.857	5.514	1.318	0.702	7.693	5.039	4.033	4.405	2.593	2.785	4.635	7.633	7.079	8.546	3.405	5.754	3.068	2.028	1.306	5.162	2.442	1.830	8.407
12596	chr6	113618041	113619634	+	0	NA	Intergenic	Intergenic	-5184	NM_009507	22346	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	12.258	7.770	8.848	6.463	11.962	10.654	19.354	12.840	8.463	8.404	6.233	9.079	10.900	12.807	8.041	10.878	14.458	5.883	3.802	6.596	5.435	2.725	6.358	7.016	8.057
5258	chr15	63869791	63875470	+	0	NA	intron (NM_183194, intron 1 of 12)	intron (NM_183194, intron 1 of 12)	5928	NM_183194	270328	Mm.483471	NM_183194	ENSMUSG00000055827	Gsdmc3	9930109F21Rik	gasdermin C3	protein-coding	nan	4.053	1.581	6.485	5.592	3.279	8.409	13.272	6.578	7.465	3.022	1.259	9.666	11.775	8.594	8.453	6.917	8.306	2.046	1.386	1.154	1.883	1.448	0.971	9.093
9622	chr3	102538218	102562662	+	0	NA	Intergenic	RLTR34C_MM|LTR|ERVK	80521	NM_013609	18049	Mm.1259	NM_013609	ENSMUSG00000027859	Ngf	Ngfb	nerve growth factor	protein-coding	5.994	1.529	0.565	6.719	6.127	2.863	6.544	6.337	6.501	8.272	nan	3.497	9.747	12.718	7.461	7.657	4.636	10.554	3.477	1.457	1.129	3.193	2.792	1.890	8.107
7718	chr19	34360788	34375591	+	0	NA	Intergenic	ORR1F|LTR|ERVL-MaLR	77530	NM_001146708	14102	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	nan	13.605	8.231	3.504	2.514	1.360	2.097	nan	1.976	1.821	1.177	0.861	1.044	2.239	1.926	2.206	nan	2.106	0.373	1.034	0.530	0.370	0.346	0.304	1.679
5690	chr15	101060328	101067934	+	0	NA	Intergenic	B4A|SINE|B4	-9732	NM_001214911	668225	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	6.459	1.003	0.419	5.107	5.780	4.253	9.071	11.034	5.951	7.490	3.607	2.377	10.624	11.090	8.634	8.911	7.958	8.381	4.965	2.491	2.309	3.489	4.553	3.695	9.499
1335	chr10	59739389	59749015	+	0	NA	intron (NM_001291443, intron 4 of 12)	intron (NM_001291443, intron 4 of 12)	41639	NM_001291443	216001	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	7.862	5.941	2.281	5.151	2.932	2.125	3.780	4.735	3.381	3.625	3.266	2.168	3.207	4.772	4.531	4.028	3.585	4.030	4.705	3.550	2.904	6.147	3.144	2.575	8.386
15306	chr9	75089331	75092986	+	0	NA	intron (NM_010864, intron 1 of 40)	L1VL2|LINE|L1	19952	NM_010864	17918	Mm.3645	NM_010864	ENSMUSG00000034593	Myo5a	9630007J19Rik|AI413174|AI661011|Dbv|MVa|Myo5|MyoVA|Sev-1|d|d-120J|flail|flr	myosin VA	protein-coding	3.368	0.628	0.213	2.590	1.524	1.047	2.486	3.132	3.201	3.897	2.112	0.625	2.868	3.852	5.001	5.612	2.724	5.425	0.581	nan	0.486	0.715	0.310	0.260	7.289
4652	chr14	48144031	48145583	+	0	NA	intron (NM_033602, intron 1 of 5)	L1MC4a|LINE|L1	23938	NM_033602	93834	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	2.271	0.701	0.456	1.052	3.211	0.828	0.574	1.849	1.640	2.057	1.111	0.955	1.756	3.659	2.067	1.957	1.606	1.716	0.631	0.483	0.237	0.869	0.299	0.121	2.842
3780	chr12	114342315	114348622	+	0	NA	Intergenic	L1Md_A|LINE|L1	123998	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	nan	1.115	0.588	2.325	3.144	1.841	2.006	2.003	2.161	2.326	1.698	1.296	2.561	3.377	1.961	nan	2.078	2.802	3.311	3.884	2.878	5.854	3.715	3.111	4.007
10891	chr4	148423064	148424375	+	0	NA	Intergenic	Intergenic	21032	NM_027873	71707	Mm.292503	NM_027873	ENSMUSG00000047719	Ubiad1	1200002M06Rik|AI426463|AW320947|Tere1	UbiA prenyltransferase domain containing 1	protein-coding	4.740	1.443	0.685	7.494	1.996	0.200	3.436	5.056	4.376	5.350	6.465	2.692	3.410	3.937	4.153	7.308	2.472	6.381	2.363	1.139	0.368	3.828	1.162	0.551	7.813
4847	chr14	75315795	75323063	+	0	NA	intron (NM_026083, intron 8 of 18)	B1_Mm|SINE|Alu	35056	NM_026083	67302	Mm.74704	NM_026083	ENSMUSG00000022000	Zc3h13	2600010B19Rik|3110050K21Rik|4930570G11Rik|C87618	zinc finger CCCH type containing 13	protein-coding	2.440	11.132	6.875	2.268	2.312	1.510	1.708	2.265	1.895	1.562	1.028	1.210	1.299	nan	1.823	2.184	1.497	2.184	1.673	2.374	1.620	3.562	1.103	0.956	2.208
8992	chr2	165743158	165747595	+	0	NA	intron (NM_001271962, intron 9 of 15)	intron (NM_001271962, intron 9 of 15)	90078	NM_010165	14049	Mm.282719	NM_010165	ENSMUSG00000017897	Eya2	Eab1	EYA transcriptional coactivator and phosphatase 2	protein-coding	4.684	3.462	2.730	3.552	4.232	3.910	2.416	3.657	2.688	2.326	2.193	2.116	2.676	nan	2.075	2.271	2.619	nan	nan	1.684	2.639	1.032	1.366	2.262	nan
5240	chr15	61128509	61132732	+	0	NA	Intergenic	Lx9|LINE|L1	-209350	NM_001081067	117586	Mm.291499	NM_001081067	ENSMUSG00000022347	A1bg	C44	alpha-1-B glycoprotein	protein-coding	0.373	0.532	0.334	nan	0.291	0.029	nan	nan	nan	nan	6.475	3.287	0.520	0.375	0.648	nan	0.661	0.955	1.791	0.619	0.139	2.249	0.671	0.334	0.340
11258	chr5	64359199	64361405	+	0	NA	Intergenic	MLTR14|LTR|ERV1	107640	NR_040681	69999	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	5.569	5.763	2.380	6.746	3.587	1.773	5.084	5.008	4.620	8.417	6.164	3.551	4.043	6.957	5.495	6.724	4.386	7.044	5.831	2.589	1.848	nan	4.614	4.223	9.314
165	chr1	51970240	51973284	+	0	NA	Intergenic	RMER13A1|LTR|ERVK	-15386	NM_001308266	20849	Mm.1550	NM_011487	ENSMUSG00000062939	Stat4	-	signal transducer and activator of transcription 4	protein-coding	7.180	1.801	0.469	5.753	2.802	2.112	5.215	4.446	3.244	6.617	5.544	2.605	5.635	4.908	6.194	9.157	5.542	6.907	3.574	1.621	1.490	3.051	2.477	3.281	10.153
11149	chr5	34020087	34022332	+	0	NA	intron (NM_001289804, intron 20 of 24)	Arthur1|DNA|hAT-Tip100	25225	NM_001001985	269642	Mm.274610	NM_001001985	ENSMUSG00000048142	Nat8l	1110038O08Rik|Shati	N-acetyltransferase 8-like	protein-coding	3.793	0.790	0.434	3.327	4.198	4.787	5.860	5.498	4.051	4.546	1.334	1.279	5.381	6.682	6.559	6.578	5.818	4.943	0.719	0.803	0.730	0.778	0.910	0.869	4.908
15470	chr9	106377076	106380383	+	0	NA	Intergenic	Intergenic	10097	NM_153459	235584	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	7.678	7.232	2.815	7.355	3.853	3.395	6.622	5.004	nan	nan	4.055	2.586	6.505	8.525	6.747	8.130	3.804	6.193	2.881	1.778	1.825	3.220	2.682	2.454	12.262
6588	chr17	35309307	35310776	+	0	NA	Intergenic	(TCC)n|Simple_repeat|Simple_repeat	-10517	NM_010390	15006	Mm.466882	NM_010390	ENSMUSG00000079507	H2-Q1	H-2Q1|Q1|Q1b|Q1d|Q1k|Qa-1|Qa1|Qed-1	histocompatibility 2, Q region locus 1	protein-coding	3.242	24.628	7.585	3.491	1.624	0.329	1.747	2.061	2.070	3.756	4.583	0.901	1.551	2.109	2.795	2.841	1.252	2.657	3.213	2.041	1.252	3.297	1.531	1.134	4.619
4579	chr14	31754584	31759685	+	0	NA	intron (NM_001024604, intron 3 of 27)	B1_Mus1|SINE|Alu	73281	NM_001024604	105522	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	6.144	2.497	0.837	5.946	3.875	1.974	5.366	6.419	5.804	9.631	1.258	0.689	6.763	9.376	6.564	8.403	nan	7.090	0.785	0.880	0.624	nan	0.609	0.448	9.072
4509	chr14	21477410	21481214	+	0	NA	Intergenic	L1M4|LINE|L1	-20458	NM_001205241	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	2.915	2.590	1.007	3.426	2.717	1.459	3.378	4.459	nan	3.026	2.667	1.139	4.206	8.588	4.082	3.708	1.981	3.033	1.802	1.549	1.344	nan	1.939	1.606	4.713
15779	chrX	97713485	97714961	+	0	NA	Intergenic	L1_Mur3|LINE|L1	-337014	NM_001161433	245527	Mm.189270	NM_175540	ENSMUSG00000034457	Eda2r	9430060M22Rik|TNFRSF27|Xedar	ectodysplasin A2 receptor	protein-coding	3.683	0.474	0.193	2.762	2.350	1.785	5.254	3.984	1.216	1.427	0.286	0.067	2.325	4.881	3.621	3.303	3.609	2.660	0.757	0.969	0.606	0.552	0.549	0.510	3.223
9887	chr3	153427370	153428277	+	0	NA	intron (NM_011372, intron 2 of 4)	intron (NM_011372, intron 2 of 4)	-129174	NR_126464	75489	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	3.641	0.778	1.074	2.515	1.969	1.142	1.373	1.987	1.704	3.015	0.372	0.554	3.452	3.366	1.961	2.802	4.005	2.311	0.678	1.104	0.405	0.224	0.546	0.592	2.425
6074	chr16	43454067	43468231	+	0	NA	intron (NM_181058, intron 2 of 6)	B1_Mm|SINE|Alu	-40953	NR_046026	626693	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	OTTMUSG00000025617	predicted gene 15713	ncRNA	2.124	9.995	5.522	2.036	1.161	0.526	0.722	nan	1.276	1.004	1.719	1.206	0.580	0.965	1.166	1.538	1.096	2.185	2.445	1.555	0.754	2.634	1.169	0.764	1.292
2553	chr11	83892595	83894447	+	0	NA	exon (NM_001291268, exon 7 of 9)	exon (NM_001291268, exon 7 of 9)	40561	NM_001291269	21410	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	4.423	0.695	0.521	2.969	1.371	0.675	2.769	3.090	2.778	2.341	3.935	0.683	2.938	5.291	3.966	3.798	2.135	5.766	0.822	0.531	0.202	nan	0.490	0.423	4.463
12309	chr6	71924565	71927907	+	0	NA	intron (NM_009088, intron 7 of 33)	intron (NM_009088, intron 7 of 33)	17183	NM_009088	20019	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	1.455	0.973	0.595	2.083	2.679	0.631	3.563	4.590	3.214	3.562	0.622	0.791	3.804	5.294	4.215	3.927	2.136	5.023	0.626	0.346	0.469	0.444	0.183	0.370	2.778
10135	chr4	59559470	59563725	+	0	NA	Intergenic	ORR1D2|LTR|ERVL-MaLR	-12233	NM_144904	230257	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	8.179	nan	5.011	8.903	5.014	3.386	nan	6.240	5.585	10.307	5.544	3.874	6.120	6.837	6.934	8.055	4.700	8.351	5.953	3.270	3.954	10.610	4.081	4.255	10.043
2979	chr11	115396115	115398591	+	0	NA	Intergenic	Intergenic	-6399	NM_001347645	68572	Mm.271062	NM_026729	ENSMUSG00000018858	Mrpl58	1110001A02Rik|1110002E03Rik|Ict1|MRP-L58	mitochondrial ribosomal protein L58	protein-coding	6.643	15.592	3.924	9.476	4.178	3.697	nan	6.282	4.175	14.032	5.804	3.318	5.536	8.370	8.070	9.851	5.014	9.311	5.570	3.449	2.743	7.406	4.148	5.597	10.807
3270	chr12	33677149	33687145	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	-246278	NM_033522	114712	Mm.204643	NM_033522	ENSMUSG00000046518	Ferd3l	Mnato3|N-twist|Nato|Nato3|Ntwist|Ptfb|bHLHa31|fer3	Fer3-like (Drosophila)	protein-coding	4.225	10.474	6.599	2.713	3.730	2.016	3.779	2.615	nan	3.295	1.251	0.942	4.516	4.858	4.343	5.604	4.167	4.883	nan	1.198	1.314	1.521	1.199	0.942	6.271
14722	chr8	124892251	124894135	+	0	NA	3' UTR (NM_198103, exon 1 of 1)	3' UTR (NM_198103, exon 1 of 1)	4512	NM_198103	102058	Mm.347360	NM_198103	ENSMUSG00000074030	Exoc8	AI414418|EXO84|Exo84p|R74783|SEC84	exocyst complex component 8	protein-coding	3.721	nan	0.518	3.890	2.575	0.711	5.425	3.553	2.877	3.414	1.515	1.057	6.153	8.891	8.322	9.984	5.134	6.005	nan	0.406	0.243	1.616	0.519	nan	7.882
14785	chr8	127470577	127475387	+	0	NA	intron (NM_001309391, intron 21 of 24)	intron (NM_001309391, intron 21 of 24)	173330	NM_001013580	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	5.948	5.859	1.269	nan	2.721	1.836	nan	7.835	4.579	12.754	4.344	3.539	6.408	7.179	nan	9.218	4.533	8.410	nan	2.176	2.613	8.189	2.173	nan	14.594
7880	chr19	53965148	53969708	+	0	NA	intron (NM_019658, intron 1 of 8)	intron (NM_019658, intron 1 of 8)	22552	NM_019658	56392	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	2.867	8.099	2.343	3.231	1.096	0.507	2.588	4.513	2.497	2.387	4.732	2.619	0.687	1.365	nan	1.921	1.083	1.857	0.899	1.993	1.136	1.684	1.617	0.946	1.669
2961	chr11	113381104	113384584	+	0	NA	intron (NM_027216, intron 5 of 9)	intron (NM_027216, intron 5 of 9)	-173175	NR_040276	319871	Mm.383743	NR_040276	ENSMUSG00000085421	4732490B19Rik	-	RIKEN cDNA 4732490B19 gene	ncRNA	0.495	nan	0.622	0.506	0.518	0.210	nan	nan	0.583	nan	0.876	0.254	0.381	0.336	0.591	0.581	0.358	nan	8.362	7.052	6.885	8.483	11.033	9.941	0.633
2569	chr11	85703427	85704993	+	0	NA	intron (NR_045875, intron 5 of 5)	L1MA9|LINE|L1	15534	NR_045875	71489	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	1.765	0.972	0.428	4.907	1.283	0.318	0.984	0.381	0.998	1.551	0.697	0.126	0.550	0.876	0.823	1.408	0.448	1.329	0.635	0.544	0.313	nan	0.314	0.243	2.234
8824	chr2	153001416	153006659	+	0	NA	TTS (NM_029064)	TTS (NM_029064)	11346	NM_178939	68559	Mm.12746	NM_178939	ENSMUSG00000027472	Pdrg1	1110004D19Rik|AU020945|AV006589|Pdrg	p53 and DNA damage regulated 1	protein-coding	5.111	1.192	0.773	3.228	3.355	2.571	5.037	8.063	nan	3.442	1.493	2.146	6.702	5.485	4.676	5.661	4.465	nan	nan	1.082	1.072	1.200	2.163	1.583	4.487
319	chr1	75244176	75245862	+	0	NA	3' UTR (NM_001159883, exon 9 of 9)	3' UTR (NM_001159883, exon 9 of 9)	8317	NM_001159885	56812	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	9.725	2.352	1.117	6.309	7.662	5.771	7.570	6.291	4.094	6.417	2.920	3.543	7.356	8.575	5.420	10.843	6.593	7.215	2.208	nan	2.921	4.277	nan	2.208	9.749
10942	chr4	150416788	150419679	+	0	NA	intron (NM_001085492, intron 2 of 22)	intron (NM_001085492, intron 2 of 22)	136317	NM_001085492	68703	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	3.746	nan	0.907	7.100	2.149	1.235	5.094	4.682	4.405	7.290	3.248	2.080	6.267	9.052	6.276	8.379	3.737	5.099	4.640	0.652	0.806	5.490	1.584	1.459	8.969
2571	chr11	85863601	85865299	+	0	NA	Intergenic	Intergenic	-25613	NM_011536	21387	Mm.275336	NM_011536	ENSMUSG00000000094	Tbx4	3930401C23	T-box 4	protein-coding	3.670	0.582	0.259	2.133	2.360	0.798	2.900	0.886	2.921	2.866	0.736	0.762	3.239	3.694	2.869	3.323	2.566	3.818	0.739	0.356	0.277	nan	0.574	0.247	2.233
11215	chr5	44635989	44639114	+	0	NA	intron (NM_001347349, intron 2 of 7)	intron (NM_001347349, intron 2 of 7)	162195	NM_001347349	16826	Mm.25785	NM_010698	ENSMUSG00000039706	Ldb2	AI035351|AW146358|CLIM1|CLP-36|Ldb3	LIM domain binding 2	protein-coding	3.971	0.879	0.635	0.905	0.852	0.556	4.401	6.301	1.279	2.277	0.350	0.511	3.598	4.964	4.586	4.147	5.659	2.171	0.657	0.654	0.700	0.901	1.090	1.032	3.591
1179	chr10	23995254	23997818	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-3055	NM_001010829	215856	Mm.377238	NM_001010829	ENSMUSG00000095647	Taar7a	Gm229|taR-7a	trace amine-associated receptor 7A	protein-coding	nan	0.615	0.341	0.404	0.037	0.077	0.461	0.374	0.305	0.286	5.951	0.786	0.361	0.233	0.330	0.735	0.485	0.587	0.891	0.435	0.319	0.687	0.576	0.171	0.367
12516	chr6	97456079	97460981	+	0	NA	intron (NM_145148, intron 2 of 23)	intron (NM_145148, intron 2 of 23)	756	NM_001346639	232288	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	4.747	0.925	0.572	4.395	1.705	0.762	1.353	1.808	2.822	3.458	2.331	1.284	2.638	3.819	3.861	6.172	4.188	4.735	nan	nan	0.733	1.347	1.008	0.572	4.867
1922	chr11	4778322	4784765	+	0	NA	TTS (NM_001252253)	TTS (NM_001252253)	-34765	NM_138948	192650	Mm.207056	NM_138948	ENSMUSG00000009075	Cabp7	-	calcium binding protein 7	protein-coding	2.696	0.945	0.574	1.005	1.385	0.662	5.037	5.387	1.914	1.932	0.733	0.423	3.837	3.909	4.262	4.331	3.591	2.584	0.641	nan	0.640	0.576	0.459	0.553	2.244
735	chr1	153273171	153276896	+	0	NA	intron (NM_010683, intron 1 of 27)	intron (NM_010683, intron 1 of 27)	57753	NM_010683	226519	Mm.1249	NM_010683	ENSMUSG00000026478	Lamc1	Lamb2	laminin, gamma 1	protein-coding	13.399	6.923	3.111	8.509	5.627	3.673	8.867	7.171	nan	10.353	4.466	2.742	11.130	10.930	7.671	13.732	11.804	9.615	nan	2.932	2.283	2.941	nan	2.739	10.669
15332	chr9	77808192	77820652	+	0	NA	Intergenic	Intergenic	59887	NM_010295	14629	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	6.078	1.101	0.729	5.314	3.561	1.855	4.503	5.413	7.153	7.955	3.792	2.025	6.015	7.909	6.509	8.680	3.863	9.838	0.727	nan	0.629	0.868	0.629	0.470	8.962
10201	chr4	81209365	81230145	+	0	NA	Intergenic	RLTR40|LTR|ERVK	223060	NM_010820	17475	Mm.153039	NM_010820	ENSMUSG00000028402	Mpdz	AI225843|B930003D11Rik|MUPP1	multiple PDZ domain protein	protein-coding	0.798	0.816	0.552	1.147	0.368	0.199	0.454	0.509	0.751	0.652	0.622	0.719	0.375	0.477	0.598	0.768	0.528	0.928	nan	8.543	4.828	20.203	0.710	0.406	0.527
2948	chr11	111285542	111290189	+	0	NA	Intergenic	Intergenic	221701	NM_008425	16518	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	2.366	0.444	0.345	nan	5.158	2.191	0.511	1.277	nan	nan	0.748	1.397	3.224	6.713	3.251	4.936	2.514	nan	0.462	0.653	0.290	nan	0.338	0.233	1.617
9889	chr3	153574421	153576913	+	0	NA	intron (NM_011372, intron 1 of 4)	UCON28c|Unknown|Unknown	149466	NM_011372	20447	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	9.473	11.833	4.766	10.050	5.655	3.121	11.200	8.505	7.086	8.151	8.178	5.266	10.052	9.657	11.047	10.555	7.992	10.724	7.499	3.664	3.020	7.211	5.055	3.362	11.816
8654	chr2	128377009	128379523	+	0	NA	intron (NR_028591, intron 1 of 1)	intron (NR_028591, intron 1 of 1)	51085	NR_028591	100043424	Mm.297222	NR_028589		Gm14005	OTTMUSG00000015351	predicted gene 14005	ncRNA	5.816	1.097	0.450	5.279	2.984	0.886	3.518	5.124	4.874	6.682	6.991	3.005	5.764	7.379	4.064	4.644	1.936	8.803	nan	0.503	0.262	1.029	0.544	0.490	6.324
1271	chr10	43986996	43989693	+	0	NA	intron (NM_172393, intron 5 of 19)	intron (NM_172393, intron 5 of 19)	16502	NM_172393	11630	Mm.292082	NM_172393	ENSMUSG00000019866	Aim1	AI462491|AI463325	absent in melanoma 1	protein-coding	8.826	5.439	2.464	5.463	4.439	3.341	6.265	5.760	5.562	5.284	4.802	3.363	5.128	7.143	6.023	6.504	6.308	6.484	nan	3.261	3.159	3.028	3.484	3.655	8.263
6921	chr17	84724556	84726447	+	0	NA	intron (NM_028233, intron 29 of 37)	intron (NM_028233, intron 29 of 37)	42380	NM_026180	67470	Mm.26581	NM_026180	ENSMUSG00000024254	Abcg8	1300003C16Rik|AI114946|sterolin-2	ATP-binding cassette, sub-family G (WHITE), member 8	protein-coding	1.587	2.272	0.662	1.326	0.756	0.091	1.554	1.353	nan	1.220	6.705	2.664	1.068	0.930	1.411	1.772	1.489	2.200	0.877	0.593	0.330	0.650	0.413	0.181	3.674
4566	chr14	30079771	30081254	+	0	NA	intron (NM_001302637, intron 33 of 48)	RLTR40|LTR|ERVK	57879	NM_175343	218865	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	3.588	1.059	0.175	2.331	2.363	0.749	1.838	0.973	2.860	3.178	0.628	0.401	3.802	4.676	2.757	5.562	nan	6.655	0.601	0.297	0.438	nan	0.443	0.017	4.161
9713	chr3	109375481	109377488	+	0	NA	intron (NM_020505, intron 1 of 26)	intron (NM_020505, intron 1 of 26)	35801	NM_020505	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.608	0.614	0.553	1.737	1.127	0.541	7.463	6.136	3.100	2.358	7.242	3.046	6.414	4.990	4.066	2.757	4.484	2.239	1.286	0.574	0.440	0.660	1.071	0.575	0.538
15217	chr9	65938070	65943364	+	0	NA	intron (NM_173185, intron 1 of 13)	B1_Mus1|SINE|Alu	31707	NM_173185	214897	Mm.325816	NM_173185	ENSMUSG00000032384	Csnk1g1	9130020E21Rik	casein kinase 1, gamma 1	protein-coding	5.283	1.029	0.430	5.033	2.539	1.925	5.105	5.386	6.224	7.554	2.656	1.144	7.070	8.827	6.481	8.346	3.579	8.408	nan	0.713	0.668	1.813	0.590	0.480	12.032
10048	chr4	46463358	46466166	+	0	NA	intron (NM_130889, intron 3 of 6)	intron (NM_130889, intron 3 of 6)	13836	NM_130889	67628	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	7.370	23.631	5.792	11.765	3.778	3.373	7.550	6.502	5.411	19.743	8.417	4.871	7.619	7.542	10.973	11.053	5.067	11.317	7.836	1.620	4.700	7.498	2.811	8.042	19.610
8781	chr2	148168931	148171083	+	0	NA	Intergenic	L1_Mus1|LINE|L1	-123038	NM_010446	15376	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	2.770	0.568	0.291	3.780	0.912	0.386	0.437	0.832	1.759	2.155	0.737	0.880	0.559	1.558	1.061	1.879	1.461	3.254	nan	0.426	0.399	0.714	0.321	0.288	1.139
15337	chr9	78023489	78027287	+	0	NA	Intergenic	(TTTG)n|Simple_repeat|Simple_repeat	-26570	NM_008103	14531	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1 (Drosophila)	protein-coding	5.736	6.959	2.727	5.794	2.542	1.040	4.918	6.807	4.759	5.950	9.866	5.380	6.148	7.111	5.309	6.038	4.168	5.334	3.572	nan	1.323	4.070	1.920	1.689	nan
7324	chr18	64978838	64980216	+	0	NA	intron (NM_001114386, intron 1 of 30)	L1_Mur3|LINE|L1	-44000	NM_031881	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	2.156	0.765	0.643	1.177	1.985	0.564	3.676	1.230	1.737	1.992	0.778	0.252	5.535	3.277	2.773	3.406	3.236	3.060	0.902	0.733	0.533	0.341	0.653	0.302	1.790
10709	chr4	135451628	135455102	+	0	NA	intron (NM_028995, intron 11 of 11)	intron (NM_028995, intron 11 of 11)	-19560	NM_022980	53902	Mm.331970	NM_022980	ENSMUSG00000059713	Rcan3	AU041093|Csp3|Dscr1l2	regulator of calcineurin 3	protein-coding	5.968	17.059	9.775	3.524	3.137	2.452	2.615	3.739	2.803	3.394	3.897	1.362	1.613	4.246	2.999	4.037	2.722	3.142	1.154	2.206	2.567	1.867	nan	1.278	3.851
14182	chr8	42180221	42182988	+	0	NA	Intergenic	Intergenic	354337	NR_045497	69966	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA	1.838	0.697	0.355	0.950	0.785	0.536	1.412	3.994	2.024	1.786	1.903	1.329	3.493	2.268	2.320	4.142	3.384	2.416	0.483	0.527	0.089	0.392	0.328	0.041	2.071
14613	chr8	114045019	114046820	+	0	NA	Intergenic	B3A|SINE|B2	-87655	NM_024446	67528	Mm.27889	NM_024437	ENSMUSG00000031767	Nudt7	1300007B24Rik|2210404C19Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 7	protein-coding	5.404	4.950	3.787	4.086	3.593	3.793	4.183	6.487	2.829	3.011	2.783	2.718	4.594	4.916	4.734	6.109	6.507	4.546	2.499	3.731	4.771	4.775	2.949	3.476	4.608
1710	chr10	110446230	110449523	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-152774	NR_028438	109335	Mm.367727	NR_028438		9230102K24Rik	-	RIKEN cDNA 9230102K24 gene	ncRNA	nan	10.675	4.418	8.508	2.437	1.913	2.461	3.774	nan	10.280	4.083	5.826	4.452	4.347	5.460	5.844	4.252	6.568	6.430	4.957	4.106	7.077	3.941	5.305	8.643
9710	chr3	108832457	108836153	+	0	NA	intron (NM_011504, intron 1 of 18)	intron (NM_011504, intron 1 of 18)	6197	NM_011504	20912	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	3.564	1.450	0.965	1.971	2.574	1.201	6.389	2.868	2.978	2.790	2.386	1.944	4.472	5.079	4.560	4.472	3.377	3.726	4.085	4.967	1.972	5.194	4.419	2.767	3.476
4783	chr14	66360641	66363210	+	0	NA	TTS (NM_019675)	TTS (NM_019675)	17629	NM_019675	56471	Mm.35474	NM_019675	ENSMUSG00000022044	Stmn4	Lagl|R75359|RB3	stathmin-like 4	protein-coding	5.012	1.133	0.380	3.753	1.644	0.585	6.715	12.825	2.222	2.553	7.385	2.008	6.602	6.844	8.205	7.848	3.178	5.726	0.550	nan	0.370	0.744	0.420	0.260	6.571
1133	chr10	19530803	19541036	+	0	NA	Intergenic	L1_Mus3|LINE|L1	-56030	NM_010511	15979	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0.452	0.714	0.535	0.267	0.115	0.037	0.304	0.297	nan	0.279	0.413	0.247	0.113	nan	0.210	0.479	0.428	0.380	8.086	4.323	2.381	5.710	6.719	4.118	nan
11862	chr5	138610466	138614285	+	0	NA	intron (NM_001044747, intron 2 of 4)	intron (NM_001044747, intron 2 of 4)	7368	NM_001163797	24135	Mm.27575	NM_013844	ENSMUSG00000058291	Zfp68	KRAB3|KRAZ2|Zfp70|mszf22|mszf49	zinc finger protein 68	protein-coding	6.683	6.683	2.402	5.209	2.178	1.622	7.020	5.535	3.293	4.755	3.853	2.571	4.564	7.560	7.068	7.237	5.630	4.744	4.280	3.897	2.161	5.036	nan	3.093	7.379
6271	chr16	96310336	96314197	+	0	NA	intron (NM_033149, intron 1 of 2)	ORR1D1-int|LTR|ERVL-MaLR	31234	NM_033149	93961	Mm.154783	NM_033149	ENSMUSG00000074892	B3galt5	1190002B21Rik|AU045265|b3Galt-V	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5	protein-coding	6.939	2.008	0.630	5.504	5.678	3.895	7.388	7.646	nan	7.136	3.373	1.492	9.457	10.397	nan	9.562	4.643	nan	nan	1.218	0.671	0.744	0.981	0.670	9.637
14653	chr8	120223580	120231671	+	0	NA	intron (NR_110496, intron 1 of 2)	MIR|SINE|MIR	605	NR_110496	434353	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	2.410	1.050	0.909	0.767	1.258	0.714	4.024	11.353	1.401	1.318	5.276	2.625	3.662	5.620	4.893	nan	3.828	2.056	1.019	0.990	0.601	1.108	0.738	0.564	2.569
5476	chr15	81686249	81692172	+	0	NA	TTS (NM_145993)	TTS (NM_145993)	8077	NM_001164320	214685	Mm.393287	NM_001164320	ENSMUSG00000063765	Chadl	AY100452|D930017K21Rik	chondroadherin-like	protein-coding	12.000	13.331	5.009	11.065	5.965	3.241	12.229	13.685	5.211	nan	nan	3.057	10.735	11.432	12.354	8.951	9.178	9.403	6.993	3.304	3.194	nan	4.844	4.585	15.160
2421	chr11	72277892	72291760	+	0	NA	Intergenic	Intergenic	-16803	NM_001291153	327959	Mm.291131	NM_001037713	ENSMUSG00000040483	Xaf1	Fbox39	XIAP associated factor 1	protein-coding	5.897	1.829	0.604	4.635	2.948	1.422	6.995	6.254	4.699	4.953	3.634	3.236	6.323	nan	7.817	8.230	5.047	7.140	3.363	2.190	1.643	3.289	nan	1.755	7.971
12371	chr6	85298611	85301013	+	0	NA	intron (NM_178639, intron 2 of 13)	intron (NM_178639, intron 2 of 13)	33610	NM_178639	94282	Mm.121485	NM_178639	ENSMUSG00000033720	Sfxn5	C230001H08Rik	sideroflexin 5	protein-coding	1.408	1.066	0.245	1.240	1.923	0.694	5.078	3.232	1.445	1.429	5.376	2.871	2.151	3.400	1.905	2.077	1.165	1.289	nan	0.317	0.550	0.589	0.362	0.232	1.494
2837	chr11	102863462	102870711	+	0	NA	intron (NM_011431, intron 7 of 27)	(GA)n|Simple_repeat|Simple_repeat	13889	NM_011431	20624	Mm.873	NM_011431	ENSMUSG00000020929	Eftud2	116kDa|Snrp116|U5-116kD	elongation factor Tu GTP binding domain containing 2	protein-coding	7.017	nan	0.874	4.502	4.954	4.449	6.122	7.827	4.827	5.010	3.050	1.777	5.947	6.990	5.333	7.772	nan	6.282	1.626	nan	1.795	1.082	nan	nan	7.857
4456	chr14	8785572	8789561	+	0	NA	Intergenic	L1_Mus2|LINE|L1	121176	NR_045968	74859	Mm.84041	NR_045968	ENSMUSG00000097898	4930455B14Rik	1700027C12Rik	RIKEN cDNA 4930455B14 gene	ncRNA	3.166	1.618	0.914	3.050	2.040	1.246	4.072	5.806	3.719	3.655	7.741	6.318	3.909	3.652	4.586	5.721	1.978	3.951	0.867	0.594	0.704	1.339	0.869	0.674	4.760
4132	chr13	52077897	52079887	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	-17849	NR_045061	74050	Mm.84860	NR_045061		4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.983	0.818	0.581	nan	0.593	0.182	3.072	1.814	1.406	1.602	4.450	1.217	3.952	3.730	1.361	2.173	0.907	2.155	1.274	nan	0.532	1.361	0.710	0.566	1.456
1118	chr10	18361176	18364818	+	0	NA	Intergenic	ID_B1|SINE|B4	-44678	NM_173390	215819	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	2.787	0.396	0.526	1.048	1.151	0.371	2.525	1.422	nan	1.828	0.459	0.227	3.848	2.505	3.053	4.963	4.078	2.935	0.887	0.804	0.417	0.732	0.594	0.395	3.248
13816	chr7	138120266	138122458	+	0	NA	Intergenic	Intergenic	276368	NM_183289	70571	Mm.334297	NM_183289	ENSMUSG00000091002	Tcerg1l	5730476P14Rik	transcription elongation regulator 1-like	protein-coding	2.895	nan	0.418	3.416	2.479	1.217	1.915	2.362	nan	2.498	2.656	1.513	2.821	3.495	3.056	3.667	2.094	5.262	0.423	0.292	0.327	0.537	0.259	0.218	5.464
1575	chr10	87841480	87849686	+	0	NA	Intergenic	Intergenic	-12682	NM_001314010	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	8.719	13.101	7.432	6.255	5.306	3.482	7.623	5.825	6.284	7.792	2.063	1.435	8.524	nan	6.869	8.899	7.762	7.572	1.337	1.321	1.416	nan	nan	1.032	8.498
13157	chr7	51859711	51860951	+	0	NA	TTS (NM_001115087)	TTS (NM_001115087)	-1684	NM_001330608	14453	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	1.582	0.984	0.150	1.074	1.420	0.814	3.320	3.838	1.113	1.309	0.620	0.040	1.663	3.369	2.701	2.992	3.346	2.264	2.010	1.577	1.525	1.738	1.463	2.523	2.821
5152	chr15	38943453	38945287	+	0	NA	intron (NM_080640, intron 1 of 1)	B4A|SINE|B4	10461	NM_080640	118452	Mm.233837	NM_080640		Baalc	2810457D07Rik	brain and acute leukemia, cytoplasmic	protein-coding	6.626	9.902	2.252	6.969	3.208	2.418	5.192	7.393	3.668	8.457	4.963	2.025	6.116	5.425	7.145	6.893	4.204	6.828	4.111	1.855	2.253	5.076	2.199	2.980	9.872
7732	chr19	34831346	34835349	+	0	NA	intron (NM_001114339, intron 2 of 6)	RLTR28|LTR|ERVL	-12574	NR_029783	723826		NR_029783	ENSMUSG00000065594	Mir107	Mirn107|mir-107|mmu-mir-107	microRNA 107	ncRNA	2.807	0.699	0.584	0.596	0.610	0.249	5.691	5.879	1.459	1.113	0.356	0.288	3.410	2.518	4.519	4.264	6.447	2.688	1.030	1.273	0.418	1.787	2.784	1.487	1.604
11673	chr5	122732786	122736971	+	0	NA	intron (NM_145358, intron 15 of 15)	intron (NM_145358, intron 15 of 15)	27334	NM_001310718	18438	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	3.670	9.926	4.684	5.321	3.848	2.581	3.199	4.578	3.387	6.540	3.591	2.261	2.830	4.250	3.998	4.651	3.506	4.592	nan	nan	3.125	3.423	nan	4.333	5.786
6938	chr17	86928790	86937045	+	0	NA	Intergenic	Intergenic	14970	NM_029121	74915	Mm.159369	NM_029121	ENSMUSG00000053375	Atp6v1e2	4930500C14Rik|Atp6e1|E1	ATPase, H+ transporting, lysosomal V1 subunit E2	protein-coding	4.486	2.835	1.327	7.630	2.944	1.982	2.828	3.574	6.350	8.099	1.833	1.981	5.195	6.842	5.532	5.783	4.653	6.750	1.036	1.007	1.071	1.251	0.950	0.752	5.343
2428	chr11	72502818	72504596	+	0	NA	intron (NM_029932, intron 9 of 11)	L3|LINE|CR1	-13787	NM_153060	216892	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	7.109	10.569	2.558	6.520	3.178	1.264	5.249	5.080	3.811	4.669	6.051	3.205	4.878	6.231	7.771	8.410	4.194	6.704	4.330	2.702	1.942	5.559	3.148	2.100	8.835
11094	chr5	28888144	28894363	+	0	NA	Intergenic	Intergenic	-304740	NM_001289757	56874	Mm.87352	NM_021470	ENSMUSG00000029130	Rnf32	1700009J01Rik|2700025B22Rik|4930542N22Rik|Lmbr2	ring finger protein 32	protein-coding	4.744	0.641	0.411	nan	2.798	1.495	5.634	3.775	6.843	7.358	0.935	1.854	5.798	7.198	6.457	6.250	3.572	7.553	0.795	0.398	0.256	0.691	0.641	0.205	5.175
5564	chr15	89259496	89261071	+	0	NA	intron (NM_027805, intron 7 of 7)	MT2B1|LTR|ERVL	45449	NR_105924	102465981		NR_105924	ENSMUSG00000098442	Mir6959	Gm27807|mmu-mir-6959	microRNA 6959	ncRNA	9.896	17.812	4.449	13.117	4.692	3.378	9.457	13.132	6.163	10.539	5.717	3.075	11.003	9.227	12.832	11.368	8.779	10.696	5.793	2.533	5.251	8.871	3.891	5.280	14.866
4718	chr14	58416279	58418928	+	0	NA	Intergenic	MLT1F-int|LTR|ERVL-MaLR	344917	NM_013518	14180	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	6.301	5.834	2.545	5.616	4.694	2.855	4.784	8.869	3.823	6.785	3.991	2.547	4.703	6.505	5.914	6.777	4.272	5.486	4.513	2.062	2.197	3.245	2.863	3.043	8.720
8628	chr2	126442939	126446585	+	0	NA	intron (NM_001080944, intron 6 of 27)	intron (NM_001080944, intron 6 of 27)	46791	NM_001080944	241633	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	A530043E15|Im	ATPase, class I, type 8B, member 4	protein-coding	8.288	0.639	0.286	4.138	1.743	0.678	7.183	8.980	3.555	4.326	0.741	0.561	7.549	7.276	8.843	11.660	8.856	8.507	nan	0.701	0.610	0.629	0.497	0.403	14.764
5561	chr15	89041232	89042667	+	0	NA	intron (NM_031260, intron 22 of 26)	L1Md_F2|LINE|L1	-17777	NM_001002005	406218	Mm.483059	NM_001002005	ENSMUSG00000058441	Panx2	-	pannexin 2	protein-coding	12.284	13.007	5.965	11.161	10.059	8.904	13.614	13.475	nan	14.662	6.208	5.480	10.739	13.028	8.978	8.956	14.579	9.350	4.948	6.041	5.934	5.509	9.201	11.254	12.772
7131	chr18	35757645	35762078	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-11698	NM_019912	56550	Mm.180052	NM_019912	ENSMUSG00000091896	Ube2d2a	1500034D03Rik|Ubc2e|Ube2d2|ubc4	ubiquitin-conjugating enzyme E2D 2A	protein-coding	7.678	5.367	2.742	4.616	3.170	1.717	5.180	6.775	3.873	5.288	3.756	1.715	7.226	6.544	4.512	6.905	6.478	6.128	3.853	1.921	1.521	2.723	2.328	1.600	6.861
4191	chr13	59647876	59650363	+	0	NA	intron (NM_027307, intron 6 of 10)	B3|SINE|B2	26665	NM_001035122	105348	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	nan	1.641	0.973	3.092	2.842	1.303	1.361	1.611	2.178	3.345	0.884	1.230	2.578	3.745	2.068	2.537	1.917	3.081	5.020	5.103	2.155	8.176	3.749	2.578	3.219
600	chr1	133056107	133058731	+	0	NA	intron (NM_001099276, intron 1 of 32)	intron (NM_001099276, intron 1 of 32)	11407	NM_001099276	240752	Mm.387308	NM_001099276	ENSMUSG00000026447	Pik3c2b	C330011J12Rik|Gm199|PI3K-C2beta|PI3KC2beta	phosphoinositide-3-kinase, class 2, beta polypeptide	protein-coding	3.128	0.958	0.578	3.293	1.252	1.302	2.853	3.361	1.854	1.722	0.449	0.455	2.491	2.779	2.937	nan	3.747	3.756	0.641	0.787	0.829	0.916	0.539	0.561	nan
80	chr1	34489675	34492302	+	0	NA	Intergenic	Intergenic	-7442	NM_009355	21755	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	6.162	6.840	2.488	7.749	3.688	2.259	6.993	5.710	4.936	5.300	3.430	2.984	5.356	7.272	6.722	8.976	5.578	6.157	3.153	2.490	1.451	5.505	4.296	2.748	6.940
10954	chr4	151460450	151462947	+	0	NA	intron (NM_001081557, intron 4 of 23)	intron (NM_001081557, intron 4 of 23)	372128	NM_001308446	105704528	Mm.415128	NM_001308446	ENSMUSG00000078491	Gm13090	OTTMUSG00000010356	predicted gene 13090	protein-coding	3.061	nan	1.462	4.218	0.924	0.536	2.496	2.405	2.524	5.687	2.068	1.803	2.289	4.536	4.265	5.772	1.951	5.170	4.635	1.240	1.053	8.145	1.552	1.366	8.758
336	chr1	77976595	77980385	+	0	NA	Intergenic	B3A|SINE|B2	218646	NM_008781	18505	Mm.1371	NM_008781	ENSMUSG00000004872	Pax3	Pax-3|Sp|Splchl2|splotch	paired box 3	protein-coding	7.193	0.526	0.438	3.972	4.692	2.953	3.003	4.658	4.451	5.834	0.605	0.684	6.196	6.574	4.902	7.045	8.548	6.518	nan	nan	0.742	0.440	nan	0.414	5.148
6806	chr17	67085025	67089652	+	0	NA	intron (NM_008984, intron 3 of 30)	MER2|DNA|TcMar-Tigger	-61103	NR_049205	100885844		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	5.803	0.621	0.160	0.589	1.782	0.690	1.388	3.633	nan	0.633	2.339	0.751	4.612	nan	7.262	6.334	5.160	4.258	0.524	0.169	0.159	0.329	0.566	0.378	6.191
457	chr1	93386580	93389233	+	0	NA	intron (NM_001271884, intron 7 of 23)	URR1B|DNA|hAT-Charlie	14010	NM_001271884	404545	Mm.297411	NM_207031	ENSMUSG00000034107	Ano7	Ngep|Ngep-L|Pcanap5|Tmem16g	anoctamin 7	protein-coding	1.697	nan	0.294	1.102	0.501	0.356	1.847	1.190	1.083	1.233	4.465	3.366	1.752	1.126	1.211	nan	0.971	nan	nan	1.472	1.233	nan	1.739	0.834	nan
12803	chr6	136480404	136481713	+	0	NA	Intergenic	RMER19A|LTR|ERVK	-37793	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	4.795	3.561	1.421	5.628	3.741	1.020	4.485	6.967	5.399	6.349	5.849	4.382	6.410	7.911	9.074	6.973	6.140	7.116	2.773	1.462	0.508	2.936	0.818	0.366	4.729
1301	chr10	57803782	57806901	+	0	NA	intron (NM_020561, intron 3 of 7)	intron (NM_020561, intron 3 of 7)	10797	NM_020561	57319	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	6.237	2.548	1.265	5.150	3.650	2.221	3.111	3.346	3.767	3.720	2.430	1.948	2.362	4.107	3.208	3.933	3.793	4.911	nan	2.339	1.680	1.186	1.441	1.106	nan
5247	chr15	61859612	61861237	+	0	NA	Intergenic	Intergenic	-85973	NR_040350	432956	Mm.404918	NR_040350		D030024E09Rik	-	RIKEN cDNA D030024E09 gene	ncRNA	4.353	0.771	0.801	nan	7.195	5.779	8.156	6.414	nan	3.293	1.543	2.697	7.885	4.967	4.653	nan	4.953	3.257	1.013	1.198	1.346	0.388	0.964	1.876	0.864
383	chr1	87933626	87937542	+	0	NA	intron (NM_177646, intron 22 of 29)	intron (NM_177646, intron 22 of 29)	72967	NM_001198573	227334	Mm.80484	NM_001033291	ENSMUSG00000005501	Usp40	B230215L03Rik|C730029K03	ubiquitin specific peptidase 40	protein-coding	11.158	0.689	0.425	2.745	3.519	2.225	10.218	10.058	4.281	5.758	3.079	3.099	7.740	7.822	7.123	10.180	8.498	5.408	0.650	0.753	0.697	nan	1.021	0.993	7.871
4945	chr14	106288725	106300963	+	0	NA	Intergenic	L1Md_F2|LINE|L1	188646	NR_073203	212085	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding	7.454	1.562	0.479	7.555	4.451	2.413	9.842	10.433	6.927	10.520	6.330	4.543	8.721	11.255	10.955	11.207	6.435	9.907	3.101	1.980	1.633	4.064	2.576	2.543	14.328
2532	chr11	79949910	79951088	+	0	NA	intron (NM_144826, intron 10 of 18)	B2_Mm2|SINE|B2	11888	NM_144826	216987	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	2.188	0.826	0.134	1.577	1.275	0.836	2.246	3.096	1.906	2.387	0.413	0.527	4.908	4.566	nan	3.482	2.216	3.208	0.666	0.256	nan	0.655	0.183	0.200	2.714
13738	chr7	133519682	133521835	+	0	NA	Intergenic	MTEb|LTR|ERVL-MaLR	81357	NM_028654	73808	Mm.159067	NM_028654	ENSMUSG00000030976	Tex36	4930404H21Rik	testis expressed 36	protein-coding	5.423	5.469	2.318	6.608	2.446	2.073	4.317	4.559	4.815	4.524	1.983	1.826	5.180	3.891	6.917	7.524	4.160	6.490	1.721	1.146	1.249	1.880	1.364	1.148	7.426
3817	chr13	5247723	5249063	+	0	NA	Intergenic	Intergenic	609699	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	3.101	0.353	0.433	1.582	2.237	1.431	2.851	1.674	2.462	2.817	1.067	1.095	3.754	4.165	4.755	4.225	1.700	4.445	1.154	0.225	0.140	0.586	0.536	0.353	2.754
13858	chr7	145848638	145852136	+	0	NA	Intergenic	Intergenic	535552	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	nan	nan	0.357	nan	0.054	0.092	0.396	0.342	nan	0.242	0.118	0.052	0.150	0.113	0.333	0.542	0.403	0.453	6.202	3.004	2.285	5.561	nan	3.031	nan
2497	chr11	77583121	77586756	+	0	NA	intron (NM_144825, intron 2 of 19)	MER21B|LTR|ERVL	22877	NM_144825	216965	Mm.340436	NM_144825	ENSMUSG00000017291	Taok1	2810468K05Rik|AU020252|D130018F14Rik|Map3k16|Markk|Psk2|mKIAA1361	TAO kinase 1	protein-coding	3.455	1.107	0.764	3.215	5.830	4.276	6.077	5.512	3.474	3.432	2.848	2.384	5.131	5.832	4.298	4.705	4.546	4.036	1.789	1.999	nan	1.155	2.025	1.566	3.486
8496	chr2	103111239	103116039	+	0	NA	Intergenic	URR1A|DNA|hAT-Charlie	39964	NM_019735	56369	Mm.24772	NM_019735	ENSMUSG00000010911	Apip	APIP2|CGI-29|Mmrp19	APAF1 interacting protein	protein-coding	2.084	2.006	1.216	1.842	1.276	0.675	1.625	3.274	2.432	2.524	5.698	1.664	3.670	3.390	2.943	4.231	3.485	3.038	1.043	0.747	0.559	nan	0.979	0.620	3.213
11122	chr5	31930666	31933368	+	0	NA	intron (NM_144541, intron 7 of 11)	intron (NM_144541, intron 7 of 11)	-204455	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	4.085	0.959	0.373	3.758	3.887	2.258	2.600	2.509	2.234	2.465	5.306	1.428	1.681	5.765	3.525	3.024	1.443	4.200	0.694	0.725	0.363	1.041	0.717	0.401	3.791
11011	chr5	5299278	5301884	+	0	NA	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	-34513	NM_001310448	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	1.295	0.591	0.288	1.535	0.769	0.169	0.800	0.953	0.882	0.706	0.462	0.698	0.403	0.786	1.065	1.169	0.870	1.618	4.185	3.909	2.139	2.281	6.839	4.396	0.821
9799	chr3	129033337	129036902	+	0	NA	Intergenic	ORR1F|LTR|ERVL-MaLR	-164759	NM_001286942	18741	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding	4.101	0.506	0.621	3.450	3.013	1.105	5.898	nan	2.016	2.102	0.416	0.528	3.810	3.532	4.380	5.444	6.103	4.229	2.549	2.488	1.339	1.405	7.176	4.862	5.629
92	chr1	36327996	36333345	+	0	NA	Intergenic	PB1D11|SINE|Alu	18088	NR_105863	102465541		NR_105863	ENSMUSG00000098680	Mir6898	Gm27816|mmu-mir-6898	microRNA 6898	ncRNA	3.858	8.541	2.958	4.595	2.291	1.159	4.621	5.292	2.712	3.246	3.047	2.791	4.157	5.574	5.011	7.374	2.211	3.421	4.535	2.085	1.719	3.914	3.046	2.682	4.771
5354	chr15	76094146	76095567	+	0	NA	Intergenic	Intergenic	-4843	NM_144847	223649	Mm.101946	NM_144847	ENSMUSG00000075590	Nrbp2	BC011468	nuclear receptor binding protein 2	protein-coding	2.984	nan	0.499	nan	1.813	0.729	3.622	9.563	2.237	2.034	1.760	1.363	2.396	4.147	2.188	1.933	1.902	2.093	1.421	0.858	0.223	nan	0.603	0.543	1.319
14955	chr9	34845806	34848010	+	0	NA	intron (NM_001190912, intron 1 of 15)	intron (NM_001190912, intron 1 of 15)	-269820	NR_029475	78934	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	6.546	2.018	1.038	4.605	3.271	2.087	3.468	4.245	5.172	4.144	3.893	1.886	4.459	5.648	5.242	5.288	3.564	4.831	nan	1.209	1.287	2.286	0.633	0.604	7.901
8413	chr2	84566511	84570395	+	0	NA	Intergenic	IAPEz-int|LTR|ERVK	-61580	NR_046046	672763	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	OTTMUSG00000013441	predicted gene 13710	ncRNA	6.294	4.092	3.080	3.971	4.228	3.831	5.163	6.734	3.486	3.125	2.660	2.176	4.425	5.094	3.713	5.495	5.928	4.112	2.705	2.164	2.580	1.916	2.495	3.378	5.070
3687	chr12	105988956	105991225	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-20173	NM_011705	22367	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	9.131	10.668	2.548	10.341	4.328	3.442	7.040	5.451	5.496	12.906	5.747	3.163	6.592	7.731	9.498	9.864	6.409	9.543	6.288	2.110	4.221	6.489	3.940	5.555	17.093
12717	chr6	127338323	127344908	+	0	NA	Intergenic	Intergenic	-33648	NR_073373	232386	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	4.716	nan	0.370	1.812	2.124	1.328	7.103	nan	2.492	3.229	0.703	0.530	6.145	8.442	7.606	nan	5.899	4.027	0.518	0.346	0.347	0.183	0.358	0.277	6.477
11261	chr5	64620980	64622086	+	0	NA	Intergenic	Intergenic	-10834	NR_045078	100042198	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	3.119	7.653	1.462	5.454	1.861	1.664	3.346	4.839	3.406	5.050	3.520	3.472	2.587	3.651	4.781	5.635	2.752	4.005	2.244	0.830	3.112	2.979	1.338	2.390	4.629
1164	chr10	20806470	20817031	+	0	NA	Intergenic	Intergenic	-86672	NM_013875	29863	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.326	0.904	0.448	0.473	0.136	0.116	0.191	0.272	nan	0.410	0.207	0.180	0.157	nan	0.325	0.653	0.502	0.509	3.388	2.963	2.035	6.632	2.904	2.566	nan
15281	chr9	71597274	71599240	+	0	NA	Intergenic	MLTR11A|LTR|ERVK	-5897	NM_001033208	102371	Mm.27585	NM_001033208	ENSMUSG00000041361	Myzap	AA407270|AV006038|Gcom1|Gm640|Grinl1a7|Myozap	myocardial zonula adherens protein	protein-coding	2.923	0.506	0.564	2.652	2.798	1.625	3.249	3.281	3.142	3.448	0.633	0.984	3.209	4.416	nan	4.062	3.953	3.548	nan	0.856	0.988	0.378	1.201	0.811	4.649
5450	chr15	80540318	80543291	+	0	NA	intron (NM_001163189, intron 1 of 5)	intron (NM_001163189, intron 1 of 5)	18666	NM_001163189	383075	Mm.297626	NM_001163189	ENSMUSG00000050439	Enthd1	Gm1242|Gm86	ENTH domain containing 1	protein-coding	7.243	9.489	3.266	nan	3.175	2.718	6.131	9.283	3.477	8.704	nan	3.110	6.493	8.039	6.449	6.809	5.753	5.876	3.468	2.213	2.580	nan	2.588	3.595	8.510
12862	chr6	146853436	146863426	+	0	NA	intron (NM_027059, intron 3 of 9)	B1F|SINE|Alu	8321	NM_027059	69371	Mm.252733	NM_027059	ENSMUSG00000030292	Smco2	1700023A16Rik	single-pass membrane protein with coiled-coil domains 2	protein-coding	3.489	1.116	0.603	nan	2.232	1.114	3.488	5.131	2.243	nan	2.126	1.203	nan	5.453	3.955	nan	4.807	3.752	1.427	nan	0.589	nan	1.483	0.662	nan
12591	chr6	113443991	113445860	+	0	NA	intron (NM_001243739, intron 1 of 1)	RLTR21|LTR|ERVK	2356	NM_001243739	67767	Mm.2053	NM_026365	ENSMUSG00000051256	Jagn1	5830427H10Rik	jagunal homolog 1	protein-coding	2.904	4.656	1.586	5.512	1.273	1.025	3.421	5.445	2.700	5.973	1.872	1.516	4.255	5.287	6.215	6.047	2.065	5.527	0.743	0.348	1.085	2.004	nan	0.391	7.807
15491	chr9	107732985	107737490	+	0	NA	Intergenic	Intergenic	-24762	NM_011349	20350	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	5.532	0.635	0.353	3.498	2.847	1.140	4.506	4.954	nan	4.721	5.753	2.553	5.164	4.998	4.755	6.231	3.798	6.358	0.708	0.877	0.539	0.719	0.673	0.559	nan
2824	chr11	102124291	102126648	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-17637	NM_001346771	217212	Mm.46248	NM_145435	ENSMUSG00000017311	Pyy	-	peptide YY	protein-coding	1.409	nan	0.319	1.719	1.672	1.279	1.104	2.015	2.876	5.485	0.692	0.511	4.356	7.822	3.211	2.900	nan	1.660	1.844	nan	2.950	4.449	nan	nan	3.667
4597	chr14	34911721	34913319	+	0	NA	intron (NM_008166, intron 2 of 15)	intron (NM_008166, intron 2 of 15)	17911	NR_029774	723847		NR_029774	ENSMUSG00000065481	Mir346	Mirn346|mir-346|mmu-mir-346	microRNA 346	ncRNA	0.760	0.923	0.095	0.378	0.237		0.975	nan	1.004	1.062	5.739	1.892	0.832	1.059	0.680	0.842	0.425	0.748	0.468	0.532	0.153	0.285	0.481	0.297	0.607
10735	chr4	136920259	136927547	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-25059	NM_007572	12259	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	5.403	5.102	2.838	4.881	7.019	5.423	4.185	4.010	nan	4.279	3.993	2.044	2.920	6.783	4.194	3.983	2.850	nan	2.281	3.013	2.828	1.818	nan	2.106	5.249
12387	chr6	86532557	86536687	+	0	NA	intron (NR_037960, intron 3 of 4)	intron (NR_037960, intron 3 of 4)	7221	NR_037961	72012	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	6.130	3.675	1.222	nan	5.045	2.196	6.664	6.165	4.252	5.665	3.208	2.134	5.645	8.660	6.474	7.902	5.076	5.802	nan	2.212	1.413	4.195	2.271	2.134	7.568
14444	chr8	90722750	90724785	+	0	NA	Intergenic	5S|rRNA|rRNA	-105068	NM_177224	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	8.249	10.158	2.926	8.919	4.630	3.445	6.696	9.053	4.304	16.412	4.667	3.218	7.089	9.197	9.165	13.855	6.155	8.065	4.132	2.901	3.996	7.021	3.010	5.997	18.531
11144	chr5	33360127	33363561	+	0	NA	intron (NM_021500, intron 3 of 8)	(CA)n|Simple_repeat|Simple_repeat	-16852	NM_001081101	71101	Mm.132178	NM_001081101	ENSMUSG00000037355	Uvssa	4933407H18Rik|D330017J19Rik|Kiaa1530|mKIAA1530	UV stimulated scaffold protein A	protein-coding	8.757	11.609	3.983	9.945	4.865	3.116	6.843	5.795	5.325	10.057	5.383	3.668	6.798	8.529	8.514	9.782	6.427	8.698	8.310	3.750	4.506	8.396	5.156	6.060	11.718
11823	chr5	136920097	136923490	+	0	NA	intron (NR_015555, intron 1 of 3)	B1F1|SINE|Alu	2647	NR_015555	66752	Mm.135764	NR_015555	ENSMUSG00000097908	4933404O12Rik	AW494809	RIKEN cDNA 4933404O12 gene	ncRNA	2.099	0.940	0.670	2.821	1.988	1.081	1.622	1.710	3.143	3.478	0.775	0.515	4.371	5.677	5.246	3.112	1.465	5.336	0.843	0.529	0.197	0.777	nan	0.242	2.016
12925	chr7	16595672	16605587	+	0	NA	intron (NM_172739, intron 1 of 6)	intron (NM_172739, intron 1 of 6)	-13195	NR_136928	102634559	Mm.421602	NR_136928	ENSMUSG00000100583	Gm29443	-	predicted gene 29443	ncRNA	4.229	10.064	6.090	3.709	2.602	1.554	2.152	6.394	2.984	2.710	2.335	2.033	2.043	3.222	2.717	2.810	2.385	3.251	1.343	1.719	1.225	1.050	0.780	0.777	2.876
419	chr1	90429087	90434749	+	0	NA	Intergenic	MTE2b|LTR|ERVL-MaLR	-171507	NM_133805	108679	Mm.119177	NM_133805	ENSMUSG00000034432	Cops8	9430009J09Rik|AA408242|Csn8|Sgn8	COP9 signalosome subunit 8	protein-coding	3.009	0.437	0.321	1.588	2.164	1.171	4.674	1.288	3.287	2.302	7.715	3.505	3.280	2.716	2.136	4.278	2.866	3.079	0.717	0.776	0.470	nan	0.588	0.670	2.396
12799	chr6	136412244	136420532	+	0	NA	promoter-TSS (NM_001201390)	promoter-TSS (NM_001201390)	-819	NM_001201390	100502936	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	5.412	9.339	4.636	5.560	3.684	2.129	4.655	5.796	4.616	4.714	7.058	4.104	5.383	5.725	6.393	6.844	7.704	5.449	nan	2.559	2.053	3.778	2.202	1.147	5.831
10997	chr4	155242392	155244708	+	0	NA	Intergenic	RMER19B|LTR|ERVK	-6416	NM_001190445	67513	Mm.10374	NM_001190445	ENSMUSG00000073684	Faap20	2610002J02Rik	Fanconi anemia core complex associated protein 20	protein-coding	4.936	6.286	2.516	4.298	3.022	2.418	4.413	5.261	2.903	4.371	3.724	1.958	3.815	6.577	5.154	6.184	3.014	4.836	3.472	1.536	1.560	3.943	2.993	2.386	8.637
2015	chr11	20758308	20760942	+	0	NA	Intergenic	(CAAA)n|Simple_repeat|Simple_repeat	-18069	NM_181411	216549	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	7.324	2.107	0.837	7.994	4.839	4.256	5.070	5.403	5.047	5.319	4.147	1.797	5.454	6.485	4.573	6.881	4.149	5.505	1.571	1.762	2.008	2.824	1.525	1.183	5.980
14015	chr8	11832449	11834294	+	0	NA	3' UTR (NM_001113518, exon 21 of 21)	3' UTR (NM_001113518, exon 21 of 21)	-7150	NM_029326	75528	Mm.440342	NM_029326	ENSMUSG00000031512	Tex29	1700018L24Rik	testis expressed 29	protein-coding	1.420	0.863	0.348	1.994	0.685	0.428	2.113	1.298	2.323	2.858	0.435	0.219	3.866	5.723	5.744	6.239	3.943	3.030	0.470	0.191	0.235	1.032	0.240	0.374	3.091
7073	chr18	23939226	23942386	+	0	NA	Intergenic	Intergenic	-13882	NM_027007	69256	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	2.297	1.417	0.995	3.660	1.479	0.710	1.693	4.818	2.350	2.602	0.711	0.475	3.712	5.414	1.881	nan	1.148	4.303	nan	0.744	0.272	nan	0.377	0.374	3.935
4521	chr14	22308424	22310177	+	0	NA	intron (NM_028275, intron 2 of 6)	intron (NM_028275, intron 2 of 6)	233498	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	2.457	0.831	0.625	2.379	2.799	2.912	0.909	1.611	2.598	2.875	2.062	0.524	1.693	4.609	3.231	2.716	1.429	2.424	1.085	0.844	0.622	nan	0.729	0.647	1.766
14583	chr8	109651623	109655150	+	0	NA	intron (NM_181544, intron 22 of 31)	MTC-int|LTR|ERVL-MaLR	38869	NM_181544	244646	Mm.436810	NM_181544	ENSMUSG00000048827	Pkd1l3	-	polycystic kidney disease 1 like 3	protein-coding	4.326	0.535	0.540	3.369	3.625	2.392	4.447	7.412	3.620	4.657	1.487	2.040	5.998	7.075	5.115	6.786	5.664	5.331	0.707	0.910	1.158	nan	1.137	1.096	6.919
3208	chr12	17314660	17317406	+	0	NA	intron (NM_001159632, intron 3 of 14)	intron (NM_001159632, intron 3 of 14)	8697	NM_133699	68775	Mm.178798	NM_133699	ENSMUSG00000020566	Atp6v1c2	1110038G14Rik	ATPase, H+ transporting, lysosomal V1 subunit C2	protein-coding	4.962	0.385	0.319	2.692	2.669	1.917	3.010	2.566	2.642	3.021	1.654	0.345	5.093	5.051	4.301	5.439	4.814	2.991	0.291	0.381	0.367	0.483	0.274	0.244	6.829
6836	chr17	71822828	71826008	+	0	NA	intron (NM_175378, intron 8 of 13)	intron (NM_175378, intron 8 of 13)	42471	NM_030179	78785	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	6.489	11.591	4.463	6.565	3.866	2.511	7.154	4.843	nan	7.968	4.596	3.256	3.939	5.878	7.070	8.723	5.879	5.990	4.527	2.725	3.736	4.208	3.797	4.461	11.846
3839	chr13	9147227	9154139	+	0	NA	intron (NM_001311117, intron 9 of 16)	intron (NM_001311117, intron 9 of 16)	56802	NM_172585	217980	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	5.738	1.156	1.048	2.710	3.380	1.746	4.313	5.981	4.725	3.681	2.868	3.829	6.293	4.899	5.512	5.164	3.864	4.115	1.544	1.531	0.945	1.111	1.943	1.370	2.284
15505	chr9	108586364	108592118	+	0	NA	intron (NM_028944, intron 2 of 8)	intron (NM_028944, intron 2 of 8)	8359	NM_028944	74443	Mm.226534	NM_028944	ENSMUSG00000006675	P4htm	4933406E20Rik|AI853847|BB128974|Ph-4	prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)	protein-coding	5.435	0.994	0.713	3.519	3.712	3.064	4.224	4.943	3.456	4.139	1.075	0.708	4.468	5.752	5.206	5.673	3.775	6.953	1.982	1.030	1.028	1.691	2.119	1.993	7.671
14500	chr8	97485509	97526576	+	0	NA	Intergenic	Lx|LINE|L1	-960069	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	6.116	1.031	0.504	5.455	4.669	2.453	5.575	7.611	4.118	5.163	1.795	1.497	7.700	8.332	6.831	8.706	4.976	6.194	2.572	2.423	2.050	5.405	2.457	1.794	10.594
9459	chr3	89030431	89043605	+	0	NA	intron (NM_138679, intron 9 of 26)	B3A|SINE|B2	53013	NM_001083808	72296	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	6.186	2.392	0.822	5.714	4.792	2.285	12.539	6.821	4.576	7.308	3.912	2.546	8.425	11.457	7.251	nan	6.952	7.000	nan	3.221	1.888	5.110	4.984	3.013	12.868
6706	chr17	47899163	47900466	+	0	NA	intron (NM_001110824, intron 2 of 16)	B4A|SINE|B4	24818	NM_028767	74123	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	4.746	7.321	1.620	4.952	0.670	0.778	5.146	3.541	2.207	3.458	3.128	2.004	2.463	3.664	3.393	4.157	1.182	3.583	1.853	0.638	1.182	6.311	0.414	0.364	5.939
13670	chr7	123584413	123590710	+	0	NA	Intergenic	Intergenic	-87112	NM_001081329	210162	Mm.135397	NM_175435	ENSMUSG00000030757	Zkscan2	9430065N20Rik|AW493225|Zfp694	zinc finger with KRAB and SCAN domains 2	protein-coding	7.594	3.271	1.249	7.192	5.233	3.160	6.031	8.890	5.785	8.069	4.938	3.229	7.302	8.705	nan	7.435	5.436	7.775	3.013	1.466	1.485	2.868	1.749	1.777	9.204
13258	chr7	72732017	72734242	+	0	NA	Intergenic	Intergenic	368939	NR_046024	625243	Mm.261798	NR_046024	ENSMUSG00000108383	Gm6567	-	predicted gene 6567	ncRNA	2.979	0.612	0.428	2.495	2.745	1.220	2.193	3.792	4.788	6.567	0.246	0.848	3.894	7.141	3.329	3.197	2.678	2.900	0.612	0.544	0.446	0.385	0.589	0.510	1.442
8976	chr2	165337237	165339925	+	0	NA	Intergenic	B3A|SINE|B2	-12102	NM_207706	140579	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	3.474	0.506	0.825	1.775	3.373	1.905	6.812	9.272	1.864	2.042	0.508	0.711	4.364	7.582	3.848	4.195	8.831	2.495	nan	1.749	1.192	1.292	2.549	1.667	nan
6398	chr17	24769005	24775702	+	0	NA	Intergenic	Lx|LINE|L1	19350	NM_001012402	328779	Mm.328848	NM_001012402	ENSMUSG00000039628	Hs3st6	3-OST-6	heparan sulfate (glucosamine) 3-O-sulfotransferase 6	protein-coding	5.539	2.747	0.921	7.779	2.292	1.621	8.054	4.713	6.281	8.308	2.601	1.644	6.649	8.990	7.887	10.324	5.365	8.356	2.548	1.057	0.777	2.282	1.186	1.377	11.932
15272	chr9	71413713	71420054	+	0	NA	Intergenic	B4|SINE|B4	68075	NM_001164793	28015	Mm.21094	NM_178602	ENSMUSG00000032199	Polr2m	AA407243|AA408799|AI303746|AW553238|D9Wsu138e|Grinl1a|mKIAA4185	polymerase (RNA) II (DNA directed) polypeptide M	protein-coding	2.604	1.275	0.789	2.975	2.207	1.457	0.943	1.749	1.860	2.009	1.662	1.177	1.409	2.010	nan	1.275	1.155	2.522	5.648	5.309	3.444	5.268	4.975	4.055	1.505
12297	chr6	70683910	70704807	+	0	NA	Intergenic	IAPEy-int|LTR|ERVK	97817	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.655	13.580	8.138	1.071	0.401	0.200	0.468	0.610	0.546	0.595	0.377	0.318	0.317	0.396	0.704	0.886	0.682	0.579	1.404	1.283	0.979	0.574	1.193	0.924	0.428
2289	chr11	61077385	61082439	+	0	NA	Intergenic	Intergenic	14108	NM_010603	16515	Mm.4970	NM_010603	ENSMUSG00000042529	Kcnj12	IRK-2|IRK2|Kir2.2|MB-IRK2	potassium inwardly-rectifying channel, subfamily J, member 12	protein-coding	6.589	4.852	1.490	6.608	2.786	1.413	5.100	6.473	5.994	7.037	3.024	2.434	8.380	8.093	6.958	8.893	5.123	7.987	nan	2.090	1.270	4.143	2.290	1.499	5.935
3283	chr12	35975183	35980376	+	0	NA	Intergenic	MER103C|DNA|hAT-Charlie	-15146	NM_011783	23795	Mm.7244	NM_011783	ENSMUSG00000020581	Agr2	Agr2h|Gob-4|HAG-2|XAG-2|mAG-2	anterior gradient 2	protein-coding	11.009	1.534	1.178	4.685	6.218	3.783	5.928	4.641	5.999	6.800	7.117	4.892	6.768	7.346	4.483	4.504	7.104	7.347	nan	1.380	0.892	0.733	0.930	0.532	4.356
14313	chr8	73275133	73279910	+	0	NA	intron (NM_010687, intron 1 of 14)	intron (NM_010687, intron 1 of 14)	76019	NM_001317391	16795	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	8.973	nan	2.268	10.440	6.652	5.441	nan	10.389	6.970	10.590	4.423	2.525	10.759	11.850	8.266	nan	9.143	9.349	2.609	2.071	2.963	nan	2.480	2.684	10.847
2312	chr11	62371176	62373149	+	0	NA	intron (NM_011308, intron 19 of 44)	intron (NM_011308, intron 19 of 44)	66353	NM_001252313	20185	Mm.271814	NM_011308	ENSMUSG00000018501	Ncor1	5730405M06Rik|A230020K14Rik|N-CoR|RIP13|Rxrip13|mKIAA1047	nuclear receptor co-repressor 1	protein-coding	2.869	1.685	0.853	2.463	3.562	2.092	2.892	4.257	2.488	2.553	1.062	2.530	3.118	4.178	2.660	2.141	1.761	2.697	nan	0.728	0.765	0.647	0.921	0.540	nan
13698	chr7	126077051	126082217	+	0	NA	intron (NM_001101488, intron 1 of 6)	intron (NM_001101488, intron 1 of 6)	2777	NM_001101488	269994	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	6.566	0.977	0.575	5.982	6.146	4.531	6.541	12.466	7.119	7.034	4.632	3.895	8.608	10.137	nan	9.558	6.335	8.907	1.231	0.749	0.781	0.979	1.181	0.878	8.672
15407	chr9	97004671	97008343	+	0	NA	intron (NM_145134, intron 1 of 2)	(TTTC)n|Simple_repeat|Simple_repeat	11848	NM_145134	211949	Mm.491271	NM_145134	ENSMUSG00000046997	Spsb4	D030068E18Rik|SSB-4|Ssb4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding	6.774	1.760	1.775	4.068	3.408	3.497	2.541	1.282	4.373	4.065	2.283	4.117	3.403	2.888	1.668	3.530	3.037	4.535	1.424	1.602	1.769	0.960	1.364	2.122	4.482
12485	chr6	94107458	94109875	+	0	NA	intron (NM_001029850, intron 1 of 23)	intron (NM_001029850, intron 1 of 23)	128776	NR_130996	78178	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	6.718	0.586	0.486	2.925	4.795	1.786	7.260	9.109	4.209	4.061	5.835	2.280	6.129	7.228	7.547	7.969	7.933	6.755	nan	nan	0.571	0.886	0.877	0.199	4.615
3096	chr11	119898905	119903898	+	0	NA	intron (NR_039557, intron 2 of 2)	intron (NR_039557, intron 2 of 2)	-12409	NM_001085498	208092	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	5.514	nan	0.517	7.493	2.966	2.063	nan	3.427	3.832	nan	2.931	1.491	2.541	4.789	3.798	4.798	2.244	nan	5.453	nan	3.710	7.423	4.339	3.817	5.678
14573	chr8	109231097	109232070	+	0	NA	intron (NR_126329, intron 7 of 9)	L1MA7|LINE|L1	109325	NR_002928	384864	Mm.390083	NR_002928		Gm1943	-	WD repeat domain 70 pseudogene	pseudo	1.039	0.852	1.496	0.580	1.205	1.329	0.398	0.777	0.544	0.663	0.240	0.691	0.312	0.798	0.644	0.865	1.053	0.578	1.686	4.415	5.224	1.832	2.865	2.505	0.484
12380	chr6	86217470	86222268	+	0	NA	intron (NM_031199, intron 1 of 5)	intron (NM_031199, intron 1 of 5)	24642	NM_031199	21802	Mm.137222	NM_031199	ENSMUSG00000029999	Tgfa	wa-1|wa1	transforming growth factor alpha	protein-coding	0.770	0.903	0.332	nan	0.376	0.161	0.939	1.088	0.459	0.463	0.511	0.513	0.622	1.074	1.609	1.340	1.063	nan	nan	1.290	1.617	4.447	1.166	0.751	1.619
3637	chr12	101436948	101440697	+	0	NA	intron (NM_173023, intron 5 of 26)	L1_Mus2|LINE|L1	34149	NM_173023	271036	Mm.84218	NM_173023	ENSMUSG00000047014	Catsperb	4931410B03|4932415G16Rik	catsper channel auxiliary subunit beta	protein-coding	10.395	13.765	3.865	10.965	2.621	1.495	5.867	6.285	5.172	10.460	5.124	3.781	7.824	7.117	9.667	11.683	7.713	9.457	6.806	2.390	2.239	7.274	2.400	3.392	18.741
1030	chr1	193119378	193121272	+	0	NA	exon (NM_145415, exon 6 of 12)	exon (NM_145415, exon 6 of 12)	9926	NM_145415	215193	Mm.173758	NM_145415	ENSMUSG00000016181	Diexf	AA408296|AW045375|Def	digestive organ expansion factor homolog (zebrafish)	protein-coding	2.758	1.094	0.639	1.639	4.090	1.038	1.513	1.636	1.179	2.248	0.864	0.554	1.220	3.907	1.375	3.798	1.677	1.941	1.046	1.729	0.988	2.612	nan	0.698	3.509
365	chr1	82928419	82929329	+	0	NA	Intergenic	Intergenic	89414	NM_001347077	15463	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	1.616	0.279	0.289	1.095	3.138	3.143	1.117	1.952	1.714	2.032	0.336	0.609	2.738	3.205	0.796	2.002	1.990	2.438	nan	nan	0.747	0.139	nan	0.308	nan
15161	chr9	61235714	61237885	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	57010	NR_045334	622037	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	4.528	2.555	0.718	2.030	1.701	1.485	6.419	4.566	3.219	2.692	1.816	1.086	4.186	5.375	5.192	4.639	3.055	3.065	1.847	2.010	1.990	2.243	1.580	1.748	6.496
2730	chr11	97640875	97644735	+	0	NA	Intergenic	ID4|SINE|ID	-13089	NM_175332	103551	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	5.497	nan	3.458	5.876	5.507	4.131	4.147	4.839	4.466	4.476	4.861	2.904	4.312	5.494	5.558	6.206	4.856	5.704	2.872	nan	2.386	3.987	nan	nan	6.290
14294	chr8	72780423	72785495	+	0	NA	Intergenic	MusHAL1|LINE|L1	21300	NM_007975	14065	Mm.12948	NM_007975	ENSMUSG00000050147	F2rl3	PAR4	coagulation factor II (thrombin) receptor-like 3	protein-coding	0.524	0.956	0.422	1.219	0.339	0.110	0.467	0.704	0.500	0.573	0.436	0.340	0.545	0.547	0.757	0.817	0.420	1.161	nan	1.832	1.590	7.892	0.731	0.908	nan
3255	chr12	29964313	29966134	+	0	NA	intron (NM_181395, intron 1 of 22)	intron (NM_181395, intron 1 of 22)	27187	NM_181395	69675	Mm.251774	NM_181395	ENSMUSG00000020674	Pxdn	2310075M15Rik|C85409|E330004E07|VPO1|mKIAA0230	peroxidasin	protein-coding	2.538	0.745	0.283	1.925	0.431	0.133	1.815	1.063	1.462	2.925	0.394	0.219	4.559	4.531	4.728	7.638	3.549	3.186	0.272	0.293	0.134	0.542	0.137	0.248	9.703
4632	chr14	46895091	46899480	+	0	NA	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	14320	NM_001037221	74480	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	3.648	0.497	0.221	2.820	1.793	0.930	5.368	7.587	4.923	5.261	1.414	1.948	6.123	5.734	7.032	7.148	3.636	5.156	0.673	0.414	0.251	0.378	0.233	0.322	4.987
2021	chr11	21030852	21032179	+	0	NA	Intergenic	RLTR1B|LTR|ERV1	-59809	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	4.653	nan	0.416	2.313	2.123	1.245	3.943	3.543	2.049	2.544	1.967	1.172	5.557	3.855	3.638	4.547	4.967	4.240	0.666	0.600	0.202	0.714	0.577	0.350	2.437
3430	chr12	74980888	74985600	+	0	NA	intron (NM_172805, intron 8 of 10)	L1VL4|LINE|L1	194088	NM_172805	238271	Mm.44465	NM_172805	ENSMUSG00000034402	Kcnh5	Eag2	potassium voltage-gated channel, subfamily H (eag-related), member 5	protein-coding	5.487	4.230	3.502	2.544	3.972	2.289	2.418	3.216	3.264	2.923	2.015	1.733	3.820	4.612	4.015	5.584	4.081	3.907	1.943	1.911	1.487	1.839	1.980	1.787	3.798
15834	chrX	139133231	139137592	+	0	NA	Intergenic	Lx8|LINE|L1	49168	NM_029174	75125	Mm.179221	NM_029174	ENSMUSG00000031270	4930513O06Rik	-	RIKEN cDNA 4930513O06 gene	protein-coding	2.338	0.782	0.353	1.404	2.392	1.249	1.063	3.052	2.041	2.017	1.511	1.377	1.544	2.259	1.865	1.895	1.410	2.194	4.077	3.461	1.566	4.149	3.360	2.570	1.887
4590	chr14	32742291	32744678	+	0	NA	Intergenic	ID_B1|SINE|B4	-42479	NM_001163616	69069	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	5.964	1.390	0.221	3.175	1.373	0.370	5.632	7.343	2.919	2.228	2.969	1.929	5.168	5.464	5.762	4.708	1.948	3.953	1.622	0.759	0.418	nan	0.852	0.303	4.444
3318	chr12	52806298	52809911	+	0	NA	intron (NM_198111, intron 2 of 13)	MER5B|DNA|hAT-Charlie	108721	NM_198111	238161	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	3.080	0.896	0.688	3.945	5.238	5.467	4.955	3.163	3.227	2.294	1.509	1.726	2.846	3.783	3.213	3.212	3.049	3.414	0.596	0.632	1.242	0.562	0.880	0.965	2.655
5193	chr15	57906688	57909090	+	0	NA	Intergenic	Intergenic	-4310	NM_001081396	210544	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	7.097	7.306	2.100	7.600	2.904	1.998	4.785	7.713	nan	9.155	3.827	1.932	5.733	6.110	6.880	8.065	4.964	6.840	4.334	2.589	3.223	5.158	3.136	3.046	12.655
570	chr1	129669773	129673792	+	0	NA	intron (NM_172485, intron 6 of 27)	intron (NM_172485, intron 6 of 27)	398478	NM_172485	210417	Mm.380518	NM_172485	ENSMUSG00000042581	Thsd7b	1700074E13Rik|B930082A18|D130067I03Rik	thrombospondin, type I, domain containing 7B	protein-coding	16.212	nan	4.283	7.873	5.175	3.557	13.500	8.623	7.926	10.005	6.047	5.003	14.764	11.737	9.982	14.198	13.687	11.776	nan	4.637	2.320	4.929	4.452	3.643	10.551
11493	chr5	103787896	103790616	+	0	NA	intron (NM_001080798, intron 3 of 19)	intron (NM_001080798, intron 3 of 19)	34683	NM_001080798	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	2.500	4.461	2.275	2.783	2.598	1.513	nan	2.670	3.517	3.114	7.317	2.475	2.350	4.479	2.647	2.866	1.843	3.126	nan	1.436	0.826	1.382	1.992	2.031	2.312
11400	chr5	89315420	89318229	+	0	NA	Intergenic	Lx5b|LINE|L1	141074	NM_008096	14473	Mm.196595	NM_008096	ENSMUSG00000035540	Gc	DBP|VDB	group specific component	protein-coding	4.758	0.972	0.422	4.484	3.184	2.149	6.723	6.649	3.024	8.558	1.945	2.177	5.892	7.103	8.788	7.770	5.229	5.719	0.430	0.387	0.659	0.722	1.483	2.377	7.970
8923	chr2	160523827	160528242	+	0	NA	Intergenic	Intergenic	-119863	NM_009408	21969	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	5.978	1.153	0.855	3.507	2.932	2.063	5.315	6.372	nan	3.502	2.692	3.067	5.623	4.395	4.370	5.745	7.039	4.985	nan	0.989	0.555	0.894	0.652	0.579	nan
3123	chr11	120688081	120690746	+	0	NA	intron (NM_198223, intron 6 of 14)	intron (NM_198223, intron 6 of 14)	12752	NM_001164224	68938	Mm.294020	NM_026877	ENSMUSG00000025142	Aspscr1	1190006K01Rik|ASPC|ASPCR1|ASPL|ASPS|RCC17|TUG	alveolar soft part sarcoma chromosome region, candidate 1 (human)	protein-coding	1.609	1.253	0.470	1.834	0.967	0.772	nan	1.413	1.734	2.225	0.754	0.529	3.673	4.489	2.578	3.800	1.604	2.486	0.852	nan	1.004	1.802	0.786	0.582	3.341
15067	chr9	50350048	50351093	+	0	NA	Intergenic	Intergenic	-117388	NR_131161	71873		NR_131161	ENSMUSG00000110916	2310003N18Rik	-	RIKEN cDNA 2310003N18 gene	ncRNA	1.707	0.890	0.488	0.577	0.749	0.149	1.377	1.024	2.011	1.996	2.118	1.792	2.908	3.846	1.812	nan	1.307	1.688	0.782	0.585		nan	0.248	0.234	nan
5191	chr15	57806544	57812389	+	0	NA	intron (NM_199449, intron 2 of 3)	intron (NM_199449, intron 2 of 3)	82952	NM_024207	67819	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	7.165	6.443	2.351	4.887	2.860	1.276	6.150	8.712	nan	nan	3.611	1.989	6.361	6.607	8.602	7.360	6.632	6.254	1.843	0.913	0.706	2.347	1.284	0.852	9.218
3761	chr12	113883102	113891847	+	0	NA	Intergenic	Intergenic	343566	NM_174885	238406	Mm.188683	NM_174885	ENSMUSG00000043945	Adam6a	Adam6|tMDCIV	a disintegrin and metallopeptidase domain 6A	protein-coding	nan	2.430	0.754	5.015	3.650	2.465	3.898	3.947	4.633	7.282	3.998	1.753	7.952	7.915	5.308	8.186	4.466	4.468	2.461	1.032	0.729	2.556	1.482	1.308	8.922
252	chr1	64363509	64364625	+	0	NA	Intergenic	B1_Mur2|SINE|Alu	-168737	NM_133828	12912	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	2.584	0.499	0.263	0.885	1.368	0.347	2.240	1.698	1.432	1.669	2.150	2.344	3.487	3.657	1.579	1.236	nan	2.452	0.985	0.407		0.566	0.533	0.341	0.767
6684	chr17	47010537	47014397	+	0	NA	Intergenic	PB1D10|SINE|Alu	-1935	NM_001177374	224826	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|ENSMUSG00000043296|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	4.278	1.201	1.121	3.240	5.998	4.658	7.391	7.798	3.589	3.399	5.377	3.575	3.532	5.554	5.090	4.513	3.528	3.659	1.318	1.194	0.989	1.031	1.339	1.465	4.190
883	chr1	173317759	173320783	+	0	NA	Intergenic	Intergenic	14232	NM_010045	13349	Mm.6393	NM_010045	ENSMUSG00000037872	Ackr1	AA162249|CCBP1|CD234|Darc|Dfy|ESTM35|FY|GPD	atypical chemokine receptor 1 (Duffy blood group)	protein-coding	5.190	18.397	7.210	4.165	2.940	1.197	2.345	1.900	2.332	3.922	3.089	1.120	1.099	4.918	2.663	5.326	3.424	2.501	0.789	2.800	1.261	0.546	0.592	0.404	4.380
7864	chr19	53177988	53181031	+	0	NA	intron (NM_013758, intron 1 of 15)	B1_Mus1|SINE|Alu	35512	NM_013758	27360	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	1.980	nan	0.682	1.376	0.555	0.284	2.495	nan	1.515	2.376	0.526	0.782	3.446	1.852	nan	3.906	5.438	2.041	0.308	0.141	0.128	0.453	0.431	0.475	nan
15761	chrX	91076603	91078304	+	0	NA	Intergenic	Intergenic	-77715	NR_126535	101055749	Mm.300769	NR_126535	ENSMUSG00000059972	LOC101055749	-	Gm5941 pseudogene	pseudo	4.294	7.214	2.258	4.391	1.609	1.020	2.236	3.369	2.482	4.721	2.188	1.977	3.302	5.399	4.770	5.770	nan	3.569	3.491	1.027	1.212	3.505	1.288	1.065	6.837
4610	chr14	41759420	41774017	+	0	NA	TTS (NM_001244671)	TTS (NM_001244671)	5686	NM_001244671	100042055	Mm.429109	NM_001244671	ENSMUSG00000095226	Gm10377	ENSMUSG00000072606	predicted gene 10377	protein-coding	8.970	12.422	5.356	7.058	4.306	2.458	6.302	10.106	5.296	6.115	8.208	4.248	6.182	9.810	7.283	8.281	4.872	6.938	4.040	3.124	1.921	2.578	3.069	2.129	9.789
12320	chr6	72310377	72314567	+	0	NA	intron (NM_147779, intron 10 of 11)	intron (NM_147779, intron 10 of 11)	7862	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	8.153	5.543	3.077	6.285	5.159	3.018	8.711	8.520	4.566	5.561	4.838	3.730	8.144	10.286	7.871	9.890	9.056	6.834	3.192	2.743	1.981	2.704	2.229	2.447	8.899
13335	chr7	82846347	82849027	+	0	NA	Intergenic	B4A|SINE|B4	-19646	NM_175366	108797	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	5.273	11.687	7.988	3.428	2.860	1.992	1.683	2.077	3.011	3.078	4.729	2.724	1.771	3.144	2.875	2.821	3.497	3.288	1.643	2.502	1.934	1.233	1.413	1.002	2.234
11848	chr5	137909539	137911107	+	0	NA	intron (NM_007819, intron 6 of 12)	MTE2a|LTR|ERVL-MaLR	11296	NM_007819	13113	Mm.289886	NM_007819	ENSMUSG00000029727	Cyp3a13	IIIAm2	cytochrome P450, family 3, subfamily a, polypeptide 13	protein-coding	1.949	0.512	0.581	1.126	1.882	0.669	3.333	3.577	3.072	4.096	1.095	0.714	2.765	4.365	3.424	3.636	1.581	2.906	1.013	0.692	0.234	0.288	1.401	0.963	2.239
12541	chr6	99641956	99642801	+	0	NA	intron (NM_025829, intron 2 of 6)	B3|SINE|B2	24393	NM_025829	66892	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	0.155	0.348	0.055	0.744		0.291	0.081	0.258	0.207	1.467	0.189	0.607	0.066	0.300	nan	nan	0.235	0.459	4.993	nan	6.791	6.389	6.843	13.104	1.056
6058	chr16	37990430	37993752	+	0	NA	exon (NM_153394, exon 8 of 10)	exon (NM_153394, exon 8 of 10)	-25232	NR_040565	75175	Mm.399335	NR_040565		4930542C21Rik	-	RIKEN cDNA 4930542C21 gene	ncRNA	4.597	0.590	0.622	2.799	1.949	2.254	6.483	7.546	2.072	1.953	1.058	1.678	5.247	3.620	3.492	6.596	3.866	3.614	3.534	2.151	1.869	3.074	3.409	3.386	6.707
15199	chr9	64862541	64865061	+	0	NA	intron (NM_001162917, intron 13 of 34)	Lx5|LINE|L1	52790	NM_001162917	102442	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	3.375	2.601	2.229	3.918	2.927	2.008	1.297	2.310	1.315	2.492	2.117	0.808	3.161	3.549	1.611	1.818	1.864	3.433	nan	2.455	2.399	1.225	1.448	1.995	4.439
6667	chr17	46162538	46170712	+	0	NA	exon (NM_019581, exon 9 of 12)	exon (NM_019581, exon 9 of 12)	5593	NM_001145979	56055	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	8.527	2.154	0.697	8.546	5.090	3.164	11.741	8.894	5.998	12.084	5.638	4.062	7.230	11.046	9.406	11.895	nan	10.103	4.282	2.751	2.568	6.656	3.223	3.195	17.661
6199	chr16	91547377	91553235	+	0	NA	intron (NM_008338, intron 1 of 6)	B3A|SINE|B2	3212	NM_008338	15980	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	9.913	nan	2.328	6.918	8.061	6.182	10.644	12.397	6.387	8.036	4.772	4.911	10.247	11.039	10.654	11.566	7.106	9.443	2.454	2.367	2.754	nan	1.626	2.144	9.177
3825	chr13	5801654	5804545	+	0	NA	Intergenic	Intergenic	54993	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	13.452	3.495	2.015	9.997	12.665	6.528	6.425	9.601	10.400	10.268	9.664	5.257	9.479	12.961	10.785	11.248	7.610	10.867	1.876	1.764	0.877	1.390	1.590	0.819	8.351
9352	chr3	62183734	62185172	+	0	NA	Intergenic	Intergenic	-154324	NM_001081295	622434	Mm.153974	NM_001081295	ENSMUSG00000036885	Arhgef26	4631416L12Rik|8430436L14Rik|AI303572|AW491953|SGEF	Rho guanine nucleotide exchange factor (GEF) 26	protein-coding	4.216	0.480	0.275	2.157	1.576	0.411	6.426	2.125	2.810	3.017	1.110	0.564	5.495	4.822	3.827	4.756	4.095	6.229	0.387	0.521	0.170	0.917	0.162	0.149	5.182
14056	chr8	14615983	14617099	+	0	NA	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-271995	NM_012000	26889	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.637	0.627	0.392	0.391	0.253		1.888	2.858	2.714	2.561	4.572	0.789	3.675	3.918	0.563	2.407	0.902	2.099	0.770	0.810	0.210	0.358	0.257	0.367	0.907
10243	chr4	87628937	87632035	+	0	NA	Intergenic	L1Md_T|LINE|L1	175837	NM_001286158	70122	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	5.419	nan	1.425	3.898	5.126	2.618	3.868	6.390	nan	5.335	4.647	3.881	3.909	6.237	4.380	4.314	2.812	nan	1.401	nan	0.676	2.981	1.170	0.368	nan
3618	chr12	93038262	93046698	+	0	NA	Intergenic	Intergenic	402343	NR_126436	75295	Mm.243878	NR_126436		4930559C10Rik	-	RIKEN cDNA 4930559C10 gene	ncRNA	1.002	11.306	5.102	0.825	0.441	0.192	0.660	0.586	0.515	0.470	0.338	0.308	0.436	0.343	0.762	1.004	0.979	nan	0.810	0.669	0.552	0.377	0.420	0.397	nan
3275	chr12	33996222	34001512	+	0	NA	Intergenic	L1Md_A|LINE|L1	41196	NM_011658	22160	Mm.3280	NM_011658	ENSMUSG00000035799	Twist1	M-Twist|Pde|Ska10|Ska<m10Jus>|Twist|bHLHa38|pdt	twist basic helix-loop-helix transcription factor 1	protein-coding	4.679	11.314	5.062	3.909	1.842	0.793	1.191	2.879	nan	2.798	1.767	0.947	3.225	3.430	3.262	4.210	2.381	3.937	nan	1.832	1.130	4.070	2.450	1.778	6.495
2463	chr11	75092573	75096768	+	0	NA	intron (NM_001002764, intron 13 of 18)	PB1D10|SINE|Alu	-28679	NR_030454	735274		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	nan	4.911	1.483	2.485	0.978	0.394	nan	1.113	1.639	1.932	0.652	0.816	1.574	1.996	nan	nan	1.486	nan	2.446	1.661	nan	4.366	1.690	1.363	2.462
12656	chr6	119730936	119733619	+	0	NA	intron (NR_104484, intron 14 of 20)	L1M2|LINE|L1	115873	NM_053204	111173	Mm.288860	NM_053204	ENSMUSG00000030172	Erc1	4930404L01Rik|5033405M01Rik|9630025C19Rik|B430107L16Rik|CAST2|ELKS|Elks1|RAB6IP2A|RAB6IP2B|Rab6ip2|mKIAA1081	ELKS/RAB6-interacting/CAST family member 1	protein-coding	1.505	0.621	0.459	0.618	1.035	0.491	1.231	1.420	0.949	0.634	5.139	1.935	0.930	nan	0.946	1.323	0.991	1.135	1.851	1.782	0.876	2.591	1.727	1.072	0.701
2493	chr11	77420491	77422015	+	0	NA	exon (NM_001291190, exon 7 of 14)	exon (NM_001291190, exon 7 of 14)	-42660	NM_139129	216961	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	11.850	20.713	5.785	15.039	8.370	6.010	10.452	9.701	6.955	20.657	11.190	4.625	8.477	nan	11.222	12.761	7.675	11.704	5.885	5.463	5.312	7.653	6.025	5.787	17.336
105	chr1	37407126	37408215	+	0	NA	intron (NM_001290797, intron 25 of 25)	intron (NM_001290797, intron 25 of 25)	22433	NM_198006	76178	Mm.28085	NM_198006	ENSMUSG00000026112	Coa5	1700001A24Rik|6330578E17Rik|Pet191	cytochrome C oxidase assembly factor 5	protein-coding	4.591	1.367	0.600	1.270	0.756	0.279	4.879	4.911	3.141	2.330	3.337	0.951	5.543	2.876	5.136	7.208	4.275	4.185	2.783	1.214	0.337	3.832	1.939	0.863	6.754
13659	chr7	121558118	121565290	+	0	NA	Intergenic	ORR1B1|LTR|ERVL-MaLR	28132	NR_102286	75793	Mm.23397	NR_102286		4933432K03Rik	1700001C18Rik|4930433G11Rik|AI428127	RIKEN cDNA 4933432K03 gene	ncRNA	2.397	3.923	1.099	2.598	0.891	0.413	0.729	1.786	1.561	3.793	0.666	0.712	1.011	nan	1.797	1.521	1.026	1.722	6.619	2.449	2.198	5.134	4.086	3.855	2.222
8330	chr2	70344594	70347825	+	0	NA	intron (NM_177376, intron 30 of 34)	intron (NM_177376, intron 30 of 34)	-128714	NM_022435	64406	Mm.423397	NM_022435	ENSMUSG00000075304	Sp5	-	trans-acting transcription factor 5	protein-coding	5.799	0.923	0.446	2.638	0.967	0.450	3.616	3.169	2.032	2.096	0.418	0.619	4.141	1.611	4.285	5.814	6.045	5.073	1.483	0.779	0.678	1.919	1.027	1.113	10.712
9233	chr3	36378834	36382435	+	0	NA	Intergenic	Lx2|LINE|L1	94890	NR_105976	102466786		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	3.725	0.899	0.444	2.812	2.785	1.636	5.496	2.870	nan	3.670	1.272	1.326	5.414	7.015	4.346	4.556	3.851	5.754	nan	0.614	0.540	nan	0.798	0.423	4.584
5976	chr16	30384856	30391348	+	0	NA	intron (NM_001128096, intron 1 of 33)	CpG	428	NM_001128094	224088	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	10.099	5.934	1.653	8.130	5.522	3.790	7.691	9.284	5.478	8.826	3.984	2.886	10.776	11.937	8.990	11.037	7.511	9.686	2.678	2.293	2.123	5.533	nan	2.485	13.001
6532	chr17	31829592	31830862	+	0	NA	Intergenic	Intergenic	25565	NM_010831	17691	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Msk|Sik|Snf1lk	salt inducible kinase 1	protein-coding	2.657	5.249	1.197	3.257	3.666	1.672	3.295	3.311	2.130	4.369	2.142	2.039	2.394	4.678	3.254	3.919	2.485	3.625	0.912	1.055	0.702	1.811	1.044	0.377	4.125
4500	chr14	21086697	21089746	+	0	NA	intron (NM_001243041, intron 1 of 10)	B3A|SINE|B2	12069	NM_001243041	11534	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	0.379	0.841	0.474	0.453	0.203	0.128	0.563	0.744	nan	0.525	0.546	0.410	0.181	0.408	0.629	0.910	0.402	0.628	6.856	5.549	4.545	6.649	4.889	4.723	0.963
2380	chr11	69691891	69695547	+	0	NA	intron (NM_001034097, intron 3 of 12)	intron (NM_001034097, intron 3 of 12)	2379	NM_011614	21944	Mm.8983	NM_011614	ENSMUSG00000097328	Tnfsf12	Apo3l|Dr3l|Dr3lg|Tweak	tumor necrosis factor (ligand) superfamily, member 12	protein-coding	7.983	6.601	1.848	9.718	2.933	1.406	7.162	8.978	4.590	6.923	8.659	4.850	7.491	8.531	9.454	10.258	5.560	8.370	2.573	2.027	1.349	3.233	nan	1.449	11.818
12555	chr6	108162270	108168202	+	0	NA	intron (NM_145937, intron 3 of 8)	intron (NM_145937, intron 3 of 8)	20347	NM_145937	58911	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	6.022	4.291	2.293	4.719	3.785	2.097	4.455	2.906	4.836	6.816	2.597	1.398	5.286	6.669	4.392	7.019	5.892	5.942	nan	2.916	1.516	2.065	4.286	2.486	5.923
3549	chr12	85261359	85269664	+	0	NA	intron (NM_175337, intron 2 of 11)	intron (NM_175337, intron 2 of 11)	5080	NM_001304475	217716	Mm.311981	NM_145446	ENSMUSG00000021245	Mlh3	AV125803|BB126472	mutL homolog 3	protein-coding	7.433	2.539	1.079	5.380	3.634	2.621	6.469	5.305	3.031	4.649	3.128	2.186	6.405	7.094	5.618	nan	7.731	5.336	2.003	2.262	2.260	1.965	2.431	2.390	nan
408	chr1	89742906	89752198	+	0	NA	intron (NM_001037136, intron 11 of 16)	(TTCC)n|Simple_repeat|Simple_repeat	-63660	NR_015540	74403	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	5.336	11.215	5.052	4.495	2.613	1.712	3.162	3.221	2.845	4.961	2.044	1.858	2.819	3.848	3.354	4.901	3.420	3.812	2.034	2.670	1.966	nan	2.395	2.000	4.812
5410	chr15	78705525	78711647	+	0	NA	intron (NM_183141, intron 1 of 1)	intron (NM_183141, intron 1 of 1)	9527	NM_183141	207393	Mm.323188	NM_183141	ENSMUSG00000043460	Elfn2	6330514E13|AW048948|BC094219|Lrrc62|Ppp1r29	leucine rich repeat and fibronectin type III, extracellular 2	protein-coding	nan	nan	1.080	nan	3.523	2.535	nan	9.828	3.788	7.100	nan	2.296	7.829	8.239	7.726	7.402	6.100	7.206	2.763	1.519	1.761	nan	2.031	1.963	11.221
7241	chr18	54461043	54462761	+	0	NA	Intergenic	Intergenic	39607	NR_040338	77433	Mm.159919	NR_040338		Redrum	9430076G02Rik	Redrum, erythroid developmental long intergenic non-protein coding transcript	ncRNA	nan	nan	0.527	nan	2.264	1.818	5.400	1.942	1.985	2.167	0.849	0.390	5.322	3.550	1.889	2.683	3.902	2.898	nan	0.772	0.591	nan	1.387	1.439	nan
11246	chr5	54351048	54354490	+	0	NA	intron (NR_038045, intron 2 of 3)	B1_Mus2|SINE|Alu	2777	NR_038045	330086	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13|ENSMUSG00000072936	predicted gene 10440	ncRNA	3.377	1.032	0.433	4.350	1.815	0.884	2.529	4.362	3.599	2.650	5.916	4.351	2.636	2.638	3.754	3.381	1.766	4.866	2.094	0.569	0.478	1.723	1.292	0.608	2.765
7527	chr19	7680362	7682744	+	0	NA	intron (NM_144785, intron 8 of 9)	intron (NM_144785, intron 8 of 9)	29757	NM_144785	207151	Mm.21365	NM_144785	ENSMUSG00000024757	Slc22a19	D630043A20Rik|OAT-5|Oat5|Slc22a9	solute carrier family 22 (organic anion transporter), member 19	protein-coding	4.083	1.275	0.597	1.963	0.424	0.410	3.974	5.614	nan	1.872	2.332	2.053	3.066	2.047	3.439	4.710	3.625	4.712	3.686	2.224	1.422	7.118	3.046	1.701	6.731
7434	chr18	82906622	82908695	+	0	NA	Intergenic	Intergenic	-3221	NM_183033	329003	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	2.258	nan	0.254	2.694	3.040	1.655	3.151	4.747	4.036	5.776	5.091	1.502	4.472	5.438	4.185	2.549	1.142	3.384	0.766	nan	0.547	1.059	1.003	0.424	2.516
13460	chr7	105304923	105314550	+	0	NA	Intergenic	RLTR9E|LTR|ERVK	-4270	NM_146750	258745	Mm.377668	NM_146750	ENSMUSG00000073907	Olfr689	MOR40-3	olfactory receptor 689	protein-coding	6.795	3.383	1.467	7.594	5.686	3.229	9.471	11.289	4.592	5.400	7.177	4.216	8.323	9.826	9.473	8.462	5.360	nan	nan	3.300	3.037	5.292	3.879	3.140	12.295
12323	chr6	72363491	72372949	+	0	NA	3' UTR (NM_001080742, exon 4 of 4)	3' UTR (NM_001080742, exon 4 of 4)	-1248	NM_001331167	66510	Mm.170023	NM_025607	ENSMUSG00000055850	Rnf181	1700047F16Rik|2500002L14Rik|6230415N01Rik|C77350	ring finger protein 181	protein-coding	5.939	1.837	1.087	3.571	3.434	2.461	9.142	9.678	3.540	4.013	2.038	1.442	8.194	9.682	6.712	9.013	7.479	5.432	1.691	1.486	1.062	1.384	2.120	1.594	5.663
2777	chr11	100423240	100424502	+	0	NA	intron (NM_001163481, intron 9 of 9)	intron (NM_001163481, intron 9 of 9)	8177	NM_001163481	14230	Mm.3894	NM_010221	ENSMUSG00000001555	Fkbp10	AI325255|FKBP-10|FKBP-65|FKBP65|Fkbp-rs1|Fkbp1-rs|Fkbp6|Fkbprp	FK506 binding protein 10	protein-coding	2.025	nan	0.567	1.387	3.282	1.861	1.947	3.767	2.689	3.095	0.774	0.612	2.717	3.774	2.191	2.285	2.707	1.717	0.595	nan	0.680	0.449	nan	nan	1.217
11523	chr5	105993070	106003205	+	0	NA	Intergenic	B2_Mm2|SINE|B2	121569	NM_018759	54367	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	3.475	1.543	1.054	2.886	2.849	1.890	4.882	2.936	3.567	4.109	1.239	1.053	4.361	4.318	4.954	5.568	3.189	4.517	nan	0.707	0.619	0.685	0.533	0.290	4.066
10852	chr4	144558599	144561013	+	0	NA	intron (NM_001085542, intron 2 of 3)	intron (NM_001085542, intron 2 of 3)	5328	NM_001085542	627085	Mm.457899	NM_001085542	ENSMUSG00000078506	Gm13124	OTTMUSG00000010546	predicted gene 13124	protein-coding	3.410	nan	1.270	2.729	2.752	1.681	2.804	3.249	3.196	3.817	2.206	1.050	3.019	3.656	3.069	4.430	1.833	4.334	0.673	0.539	0.425	0.908	0.775	0.900	2.884
3601	chr12	88199161	88201670	+	0	NA	Intergenic	SRV_MM-int|LTR|ERVK	-18521	NR_136900	100039315	Mm.426539	NM_001105254	ENSMUSG00000066027	Gm10436	ENSMUSG00000072907	predicted gene 10436	protein-coding	13.021	6.166	2.048	6.510	5.876	3.809	8.895	8.676	5.193	7.176	4.370	3.261	9.663	10.631	9.712	15.063	11.717	8.652	6.052	4.238	5.096	8.278	5.127	4.864	17.468
9091	chr2	178394453	178397135	+	0	NA	intron (NM_177191, intron 7 of 43)	intron (NM_177191, intron 7 of 43)	11864	NM_177191	320558	Mm.70781	NM_177191	ENSMUSG00000060445	Sycp2	3830402K23Rik|4930518F03Rik	synaptonemal complex protein 2	protein-coding	4.426	0.432	0.237	2.955	2.359	1.350	4.235	1.056	5.002	5.426	0.634	0.519	5.156	4.318	5.563	7.910	7.052	nan	1.037	0.681	0.525	0.633	0.471	0.391	8.315
8912	chr2	158887664	158889381	+	0	NA	Intergenic	Intergenic	93715	NM_001291144	71715	Mm.315652	NM_145742	ENSMUSG00000027655	Dhx35	1200009D07Rik|Ddx35	DEAH (Asp-Glu-Ala-His) box polypeptide 35	protein-coding	3.868	0.575	0.207	3.815	1.769	0.927	0.778	0.841	3.274	5.181	0.540	0.470	3.845	6.647	3.814	3.585	0.976	6.245	nan	0.794	0.514	0.870	0.891	0.217	6.562
5301	chr15	73341353	73347211	+	0	NA	intron (NM_007982, intron 2 of 31)	Lx10|LINE|L1	78909	NM_007982	14083	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FAK|FRNK|Fadk|mKIAA4203|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	8.342	7.627	4.560	nan	5.253	4.129	10.207	8.592	5.416	nan	nan	2.511	8.156	8.296	6.814	7.043	8.083	7.693	2.954	1.896	1.828	nan	2.392	2.444	8.692
10064	chr4	47302878	47308532	+	0	NA	intron (NM_009928, intron 34 of 39)	B4A|SINE|B4	-47517	NM_001312868	21812	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	4.900	nan	0.677	3.304	2.135	0.809	4.105	6.588	4.559	4.914	3.242	2.698	4.310	5.257	6.629	6.291	2.981	5.315	2.048	1.161	0.849	nan	0.901	0.563	7.143
8867	chr2	156102907	156105452	+	0	NA	intron (NM_029397, intron 1 of 2)	intron (NM_029397, intron 1 of 2)	7786	NM_170598	75710	Mm.27660	NM_029397	ENSMUSG00000089824	Rbm12	5730420G12Rik|9430070C08Rik|AI852903|SWAN|mKIAA0765	RNA binding motif protein 12	protein-coding	4.695	2.046	0.851	4.446	3.892	2.214	4.392	6.782	3.446	3.859	2.657	1.383	5.893	5.503	3.849	5.620	4.203	5.686	nan	1.381	1.220	2.232	2.328	1.650	3.892
9722	chr3	115897502	115903791	+	0	NA	intron (NM_027193, intron 4 of 7)	RSINE1|SINE|B4	12463	NM_027193	69740	Mm.5915	NM_027193	ENSMUSG00000033554	Dph5	2410012M04Rik|AU045680|C80186	diphthamide biosynthesis 5	protein-coding	2.881	1.514	0.743	1.855	1.010	0.527	6.609	3.531	2.705	nan	1.745	2.212	4.651	3.224	6.313	4.556	3.688	4.150	1.859	0.605	0.361	1.436	nan	0.689	3.209
4956	chr14	119087664	119092415	+	0	NA	intron (NM_001081252, intron 4 of 38)	L1_Mus1|LINE|L1	9395	NM_001081252	66435	Mm.213406	NM_025561	ENSMUSG00000042104	Uggt2	1810064L21Rik|3110001A05Rik|3110027P15Rik|A230065J02Rik|AW047562|Ugcgl2	UDP-glucose glycoprotein glucosyltransferase 2	protein-coding	4.026	7.682	3.635	2.308	1.236	0.707	1.962	3.284	2.860	2.863	4.299	5.046	1.514	1.830	nan	2.836	1.436	2.645	2.364	1.869	1.343	3.183	2.547	1.900	3.260
7049	chr18	20215206	20218708	+	0	NA	Intergenic	Intergenic	-30383	NM_181680	211924	Mm.391118	NM_181680	ENSMUSG00000034774	Dsg1c	Dsg1gamma|Dsg6|dsg1g	desmoglein 1 gamma	protein-coding	5.200	1.645	0.481	0.510	0.088	0.072	5.679	8.796	0.564	0.777	9.802	3.178	5.848	4.248	3.542	2.090	4.410	1.719	4.040	2.517	2.167	5.200	3.000	2.442	1.154
11591	chr5	114604216	114606965	+	0	NA	intron (NM_001004180, intron 2 of 2)	intron (NM_001004180, intron 2 of 2)	37339	NM_001004180	433940	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	2.553	0.584	0.537	2.587	1.670	0.715	4.551	5.287	2.169	3.823	0.317	1.359	3.711	6.838	4.258	3.408	3.165	2.211	5.641	nan	1.778	3.468	nan	2.496	3.686
9097	chr2	179813102	179816621	+	0	NA	intron (NM_001316723, intron 4 of 5)	intron (NM_001316723, intron 4 of 5)	161785	NM_001081092	228980	Mm.235542	NM_001081092	ENSMUSG00000039117	Taf4	135kDa|AI450312|TAFII130|TAFII135|Taf2c1|Taf4a	TATA-box binding protein associated factor 4	protein-coding	2.921	0.572	0.406	1.757	1.839	1.642	3.563	1.726	1.800	1.954	0.946	0.838	4.270	3.843	1.869	3.677	4.998	2.747	1.816	1.653	1.850	1.753	1.965	1.520	4.823
6458	chr17	27915447	27917465	+	0	NA	intron (NM_001286040, intron 1 of 24)	intron (NM_001286040, intron 1 of 24)	7150	NM_181413	224650	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	3.237	1.113	1.034	2.623	2.585	2.689	2.563	3.547	2.610	3.066	5.519	4.183	2.594	4.901	2.423	4.058	3.529	4.111	1.175	1.085	0.799	0.933	1.037	1.113	4.133
3808	chr13	3641880	3646447	+	0	NA	intron (NM_178283, intron 3 of 5)	intron (NM_178283, intron 3 of 5)	10131	NM_001267724	142688	Mm.253061	NM_178283	ENSMUSG00000033781	Asb13	2210015B19Rik|6430573K02Rik|Asb-13|C85285	ankyrin repeat and SOCS box-containing 13	protein-coding	5.184	0.666	0.426	3.089	5.034	2.938	5.396	5.484	3.923	4.358	1.738	2.246	5.158	7.007	5.144	6.264	4.042	5.419	1.542	1.719	1.795	2.202	1.490	1.353	5.162
12557	chr6	108255318	108257922	+	0	NA	intron (NM_010585, intron 4 of 61)	MLT1D|LTR|ERVL-MaLR	43524	NM_010585	16438	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|ENSMUSG00000072853|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	7.016	7.751	5.576	6.467	5.067	2.073	8.048	6.716	4.065	3.914	2.243	3.102	7.019	6.601	6.916	8.692	6.938	6.714	3.685	4.404	2.358	3.912	4.984	3.098	8.666
13043	chr7	28035872	28039813	+	0	NA	Intergenic	Lx2B2|LINE|L1	12250	NM_011874	23996	Mm.29582	NM_011874	ENSMUSG00000030603	Psmc4	CIP21|MIP224	proteasome (prosome, macropain) 26S subunit, ATPase, 4	protein-coding	3.660	1.193	0.741	2.910	5.941	4.590	6.414	10.128	4.298	4.300	2.072	2.933	5.640	7.710	4.260	5.386	3.818	5.056	1.135	0.732	0.691	0.681	3.900	2.928	3.873
12560	chr6	108357934	108366183	+	0	NA	intron (NM_010585, intron 10 of 61)	intron (NM_010585, intron 10 of 61)	-127685	NR_106121	102465766		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	6.439	1.514	0.758	3.954	3.976	2.164	9.616	8.156	5.517	7.526	1.808	1.124	12.166	10.623	9.299	12.182	8.246	7.377	nan	0.779	0.528	0.839	0.751	0.602	7.047
15559	chr9	117106162	117108072	+	0	NA	intron (NM_001172122, intron 2 of 13)	RMER17A2|LTR|ERVK	145366	NM_001172123	207181	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding	1.260	0.443	0.267	0.546	0.350	0.195	0.871	1.405	1.864	1.451	7.459	2.274	0.955	1.085	1.417	1.597	0.809	1.579	0.674	0.450	0.064	0.547	nan	0.056	1.326
12196	chr6	42207268	42216846	+	0	NA	Intergenic	L1Md_T|LINE|L1	-3271	NM_001001453	387515	Mm.377922	NM_001001453	ENSMUSG00000051917	Tas2r144	Tas2r40|Tas2r44|mt2r33	taste receptor, type 2, member 144	protein-coding	8.845	3.236	1.532	5.068	3.841	1.941	13.265	10.889	6.893	7.294	5.514	2.946	13.309	12.809	10.225	14.071	11.429	8.613	nan	1.599	0.806	nan	nan	1.450	8.643
13488	chr7	106679997	106688767	+	0	NA	Intergenic	Lx2B2|LINE|L1	5347	NM_146452	258444	Mm.271372	NM_146452	ENSMUSG00000064223	Olfr694	MOR283-9	olfactory receptor 694	protein-coding	5.831	3.148	1.112	6.199	4.114	2.674	4.614	7.639	2.876	4.653	3.007	2.218	5.306	5.330	4.300	5.121	3.349	5.832	nan	1.675	1.522	2.354	1.791	1.357	5.886
12567	chr6	108479819	108490049	+	0	NA	intron (NM_010585, intron 48 of 61)	intron (NM_010585, intron 48 of 61)	-4809	NR_106121	102465766		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	7.352	2.357	1.157	4.767	4.955	2.730	11.009	10.313	5.435	6.043	4.637	3.057	10.562	10.447	8.746	11.280	8.057	7.186	nan	1.477	1.495	1.362	1.954	1.427	nan
2307	chr11	62045278	62048244	+	0	NA	intron (NM_001310526, intron 3 of 7)	intron (NM_001310526, intron 3 of 7)	-30263	NM_001029936	432572	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	4.036	1.056	0.691	4.421	7.254	5.150	2.029	1.624	4.934	6.096	2.436	0.571	4.451	6.585	2.666	5.593	4.044	5.347	nan	1.211	1.024	0.508	1.423	1.369	4.290
7039	chr18	14128316	14131303	+	0	NA	Intergenic	Lx2|LINE|L1	-102497	NR_045373	74529	Mm.400519	NR_045373		8430422H06Rik	-	RIKEN cDNA 8430422H06 gene	ncRNA	3.773	2.001	0.910	5.156	2.186	1.627	4.291	1.513	2.405	4.959	1.453	0.910	1.873	3.263	3.565	2.228	2.198	2.300	0.833	1.326	1.641	1.334	0.894	0.858	4.242
2706	chr11	96684234	96692995	+	0	NA	intron (NM_001033186, intron 4 of 12)	intron (NM_001033186, intron 4 of 12)	88941	NM_028965	74479	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	6.369	nan	2.138	6.606	4.608	2.610	5.651	5.950	3.895	5.434	4.335	2.804	4.661	7.311	5.325	6.607	4.718	6.282	3.671	nan	2.702	4.316	nan	nan	6.776
12468	chr6	91679657	91681040	+	0	NA	Intergenic	Intergenic	-3719	NM_009320	21366	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	2.447	1.585	0.787	3.543	0.745	0.087	5.457	5.606	1.962	1.933	2.431	1.864	4.363	3.377	5.884	9.310	1.792	4.776	5.874	3.990	2.351	6.054	3.162	2.266	5.444
6609	chr17	36052028	36060563	+	0	NA	intron (NM_001199967, intron 5 of 5)	intron (NM_001199967, intron 5 of 5)	2076	NM_001199967	100529082	Mm.484641	NM_001199967	ENSMUSG00000079492	Gm11127	ENSMUSG00000079492	predicted gene 11127	protein-coding	11.164	9.164	4.047	8.278	6.558	3.021	13.653	8.874	7.603	8.849	8.778	4.300	11.825	13.690	11.082	12.693	10.879	8.567	6.169	4.183	2.058	5.278	4.558	3.390	11.588
9200	chr3	27919003	27921812	+	0	NA	Intergenic	L3|LINE|CR1	-18273	NM_001164056	18805	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	4.753	0.361	0.705	2.592	1.795	1.120	8.678	3.983	4.836	4.215	6.703	3.561	6.693	5.055	6.204	6.372	4.589	7.159	4.412	1.839	1.092	4.429	2.353	1.467	6.742
7826	chr19	46526924	46538299	+	0	NA	intron (NM_019718, intron 5 of 5)	intron (NM_019718, intron 5 of 5)	30963	NM_053100	93679	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	5.927	2.968	1.027	nan	3.063	1.695	7.902	9.957	4.720	5.408	4.043	3.509	4.719	7.314	7.651	7.356	5.595	7.398	1.174	0.994	0.946	1.463	0.822	0.813	9.239
5973	chr16	30090143	30091431	+	0	NA	Intergenic	Charlie15b|DNA|hAT-Charlie	25430	NM_008235	15205	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hairy and enhancer of split 1 (Drosophila)	protein-coding	3.969	0.838	0.601	1.949	0.761	0.468	4.048	3.658	2.987	2.327	2.362	2.273	4.864	3.746	4.805	7.152	4.237	5.780	1.589	0.338	0.400	1.673	nan	0.129	6.886
8546	chr2	117934974	117938907	+	0	NA	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	115012	NR_040631	73938	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	6.797	1.747	0.871	5.268	3.876	2.060	6.137	6.612	3.368	5.204	8.295	2.638	7.876	7.714	6.949	9.186	7.355	6.284	2.249	1.957	1.614	2.690	3.897	3.405	11.807
12851	chr6	145900663	145902568	+	0	NA	Intergenic	IAPEz-int|LTR|ERVK	-30258	NM_001310837	16651	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	nan	1.199	0.321	nan	0.351	0.057	0.474	1.312	1.035	nan	5.377	2.407	nan	0.900	0.707	nan	0.488	1.377	2.005	nan	0.336	nan	0.447	0.473	nan
8736	chr2	144034495	144036630	+	0	NA	intron (NM_001044750, intron 1 of 2)	MER3|DNA|hAT-Charlie	2460	NM_207275	403171	Mm.389362	NM_207275	ENSMUSG00000037307	Banf2	4930517K23Rik|Baf-L|Baf-like|Gm115	barrier to autointegration factor 2	protein-coding	4.960	1.398	0.433	1.873	1.854	1.456	4.034	3.271	3.338	4.246	1.115	0.573	3.000	2.423	2.591	4.396	4.355	2.935	nan	0.784	0.115	0.393	0.525	0.402	5.890
5444	chr15	79968812	79972482	+	0	NA	Intergenic	Intergenic	28379	NR_106072	102465699		NR_106072	ENSMUSG00000099222	Mir7213	Gm27377|mmu-mir-7213	microRNA 7213	ncRNA	nan	nan	0.535	nan	1.584	1.117	5.509	9.416	3.737	2.702	nan	5.237	6.301	nan	3.679	4.208	4.803	4.228	1.378	1.243	1.323	nan	1.949	1.636	3.321
12888	chr6	149089307	149094838	+	0	NA	intron (NM_177192, intron 1 of 20)	B1_Mus2|SINE|Alu	9608	NM_177192	320560	Mm.426874	NM_177192	ENSMUSG00000030313	Dennd5b	9330160C06Rik|AI852444|D030011O10Rik|ENSMUSG00000072657|Gm17524	DENN/MADD domain containing 5B	protein-coding	5.000	2.217	1.245	nan	4.886	4.026	6.829	8.352	3.410	3.626	2.599	2.518	9.604	11.338	7.509	7.965	6.621	4.527	1.634	nan	0.981	nan	0.976	0.813	nan
5502	chr15	83236948	83244999	+	0	NA	intron (NM_001004150, intron 1 of 2)	ORR1A1|LTR|ERVL-MaLR	10758	NM_001170954	239559	Mm.323805	NM_001004150	ENSMUSG00000047878	A4galt	-	alpha 1,4-galactosyltransferase	protein-coding	8.265	1.895	0.842	6.027	5.728	3.210	9.239	10.287	nan	6.696	2.548	2.389	9.853	10.412	nan	nan	6.370	10.401	nan	1.095	0.872	nan	0.777	0.559	9.407
2133	chr11	48681746	48688101	+	0	NA	Intergenic	Intergenic	-115437	NM_008143	14694	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	10.861	12.872	4.648	10.605	5.406	3.145	7.400	7.605	7.491	8.977	6.207	3.977	9.187	10.495	9.966	10.538	6.565	nan	5.927	3.148	2.064	nan	nan	2.174	10.060
11210	chr5	44199088	44207575	+	0	NA	intron (NM_173764, intron 3 of 13)	intron (NM_173764, intron 3 of 13)	23275	NM_173764	231225	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	3.773	1.266	0.707	1.670	2.806	1.768	4.115	6.343	2.320	1.896	1.521	1.537	3.889	3.554	4.186	3.523	nan	4.096	0.928	0.851	0.525	1.304	1.022	0.545	2.686
13505	chr7	107888923	107890724	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-12896	NM_146774	258770	Mm.389960	NM_146774	ENSMUSG00000073893	Olfr472	MOR204-5	olfactory receptor 472	protein-coding	1.710	0.779	0.596	1.916	6.542	4.636	5.769	2.173	1.785	1.005	0.615	1.043	1.198	4.183	2.124	nan	1.677	nan	nan	0.711	0.685	0.279	0.689	0.930	1.849
8118	chr2	31937158	31940257	+	0	NA	intron (NM_011836, intron 25 of 27)	ID_B1|SINE|B4	-11596	NM_145144	108897	Mm.24838	NM_145144	ENSMUSG00000001864	Aif1l	2810003C17Rik|AI043124|C87647|Iba2	allograft inflammatory factor 1-like	protein-coding	3.709	13.304	3.265	4.954	0.682	0.389	2.174	1.885	nan	4.190	0.720	0.740	1.162	2.624	5.214	3.797	1.903	3.971	2.990	1.217	1.956	2.933	0.900	1.363	9.955
8312	chr2	68253472	68255905	+	0	NA	intron (NM_016866, intron 16 of 17)	intron (NM_016866, intron 16 of 17)	150016	NM_020283	26877	Mm.226435	NM_020283	ENSMUSG00000034780	B3galt1	beta3Gal-T1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	protein-coding	2.952	0.552	0.627	1.409	0.916	0.400	2.444	3.337	1.242	2.088	1.221	0.643	2.237	4.447	3.816	2.310	2.469	3.118	0.952	0.626	0.797	0.953	0.543	0.395	3.188
4969	chr14	121245442	121246948	+	0	NA	intron (NM_134082, intron 13 of 26)	intron (NM_134082, intron 13 of 26)	133035	NM_145465	223255	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	4.472	1.221	0.371	2.857	2.457	1.218	3.809	8.838	1.056	1.389	3.221	0.679	2.711	4.065	nan	3.108	2.176	2.830	1.264	1.134	0.620	0.828	1.276	0.987	3.761
14073	chr8	23968762	23971114	+	0	NA	intron (NM_001277239, intron 6 of 7)	intron (NM_001277239, intron 6 of 7)	300277	NM_177086	320158	Mm.121274	NM_177086	ENSMUSG00000037492	Zmat4	9630048M01Rik	zinc finger, matrin type 4	protein-coding	6.423	9.875	3.033	10.000	3.973	3.151	4.699	6.801	3.766	13.865	6.508	2.896	4.980	6.108	6.495	9.186	4.278	6.675	4.188	2.420	4.218	nan	2.998	4.501	13.512
6529	chr17	31700255	31705119	+	0	NA	Intergenic	URR1B|DNA|hAT-Charlie	24756	NM_001278570	12954	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	4.780	6.350	2.256	7.122	3.932	2.906	5.490	3.997	3.740	8.754	3.970	2.418	3.851	5.757	5.607	nan	4.785	5.345	5.143	2.552	3.390	5.632	3.218	5.302	9.792
4722	chr14	59982706	59985452	+	0	NA	intron (NM_015803, intron 23 of 35)	L1Md_T|LINE|L1	102755	NM_015803	50769	Mm.319599	NM_015803	ENSMUSG00000021983	Atp8a2	AI415030|Atpc1b|agil|wl	ATPase, aminophospholipid transporter-like, class I, type 8A, member 2	protein-coding	5.436	nan	1.261	6.105	5.312	2.766	4.853	6.096	4.230	3.743	5.119	1.994	5.383	5.563	5.743	7.144	3.442	5.892	4.189	1.915	1.269	2.152	2.119	1.734	6.604
8337	chr2	70971821	70974787	+	0	NA	exon (NM_001110512, exon 6 of 9)	exon (NM_001110512, exon 6 of 9)	45070	NM_001110512	228019	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	2.806	0.939	0.522	1.526	1.042	0.580	3.753	3.484	2.237	2.890	2.010	0.736	3.542	3.370	3.222	3.792	5.676	2.739	0.410	0.346	0.306	0.387	0.237	0.276	5.338
431	chr1	91450545	91452392	+	0	NA	intron (NM_011066, intron 1 of 22)	intron (NM_011066, intron 1 of 22)	7860	NM_011066	18627	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	3.501	1.044	0.613	2.816	6.227	3.285	1.321	4.748	1.914	2.866	1.363	0.695	1.054	4.099	1.267	1.777	1.662	2.621	1.953	0.731	0.703	nan	0.998	0.773	2.442
7191	chr18	39047248	39050858	+	0	NA	intron (NM_175164, intron 1 of 22)	intron (NM_175164, intron 1 of 22)	55908	NM_175164	71302	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	5.137	3.969	1.619	3.632	1.659	0.721	5.465	4.313	3.299	3.180	1.251	1.331	6.060	5.916	5.511	6.269	3.151	5.903	1.602	1.680	0.870	3.898	1.788	1.045	5.271
11932	chr5	145048089	145058260	+	0	NA	Intergenic	Lx5b|LINE|L1	10184	NM_027069	69396	Mm.45463	NM_027069	ENSMUSG00000029620	1700018F24Rik	AV045857	RIKEN cDNA 1700018F24 gene	protein-coding	2.737	0.733	0.518	nan	4.219	3.494	4.862	4.052	nan	2.927	1.949	2.229	3.409	7.063	6.679	nan	3.346	3.606	1.670	1.046	1.287	1.283	2.081	2.199	nan
3487	chr12	80624948	80638227	+	0	NA	Intergenic	B2_Mm2|SINE|B2	12524	NM_007951	13877	Mm.246551	NM_007951	ENSMUSG00000021131	Erh	Mer|Prei1	enhancer of rudimentary homolog (Drosophila)	protein-coding	5.940	1.520	0.766	3.219	2.794	1.651	5.614	4.644	4.986	4.893	4.728	1.919	9.816	6.638	6.334	nan	8.199	5.621	1.109	1.610	0.805	1.332	1.247	0.787	5.738
12537	chr6	99223091	99228589	+	0	NA	intron (NM_001347345, intron 4 of 19)	intron (NM_001347345, intron 4 of 19)	40675	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	6.395	1.563	0.987	4.694	3.815	2.322	8.291	8.034	6.174	7.332	2.345	1.909	9.904	11.039	8.331	10.835	9.347	7.891	nan	nan	0.446	0.941	1.175	0.691	6.533
13894	chr7	148603526	148605044	+	0	NA	Intergenic	Intergenic	3289450	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	nan	1.178	0.698	nan	2.574	2.271	0.496	1.745	nan	1.741	0.702	0.863	0.622	2.830	1.048	0.977	0.562	0.961	1.002	0.464	0.107	1.047	nan	0.401	1.099
12572	chr6	108774569	108778060	+	0	NA	Intergenic	Intergenic	-6745	NM_026011	67166	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	3.177	9.011	5.383	2.119	2.312	1.460	1.988	2.483	2.085	2.433	1.235	1.032	2.194	3.226	3.304	3.716	2.667	3.304	nan	1.137	1.057	1.038	0.729	0.616	2.029
7134	chr18	35879567	35883065	+	0	NA	Intergenic	Intergenic	51498	NM_133687	67393	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	5.718	2.549	1.092	6.022	2.565	0.941	2.047	3.391	3.064	3.869	2.437	2.014	2.468	2.699	2.817	nan	2.228	5.487	1.672	1.262	1.204	1.863	1.138	1.164	4.304
11379	chr5	77823843	77837364	+	0	NA	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	365115	NR_131050	69370	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	4.227	1.590	0.732	3.090	1.626	0.833	4.947	3.333	3.056	3.790	1.296	0.839	5.097	4.967	4.302	nan	3.468	nan	1.096	0.698	0.509	0.816	0.556	0.561	4.297
4729	chr14	60458269	60460464	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	81080	NM_001164705	72125	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	2.889	nan	0.413	0.851	0.521	0.337	3.573	7.321	1.310	0.923	0.342	0.254	1.737	4.552	4.641	2.656	1.824	1.637	0.717	0.794	0.893	0.572	0.952	0.517	1.975
4329	chr13	100006865	100010366	+	0	NA	intron (NM_030026, intron 1 of 16)	intron (NM_030026, intron 1 of 16)	7024	NM_030026	78038	Mm.137327	NM_030026	ENSMUSG00000021646	Mccc2	4930552N12Rik|MCCB	methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	protein-coding	4.769	3.008	0.692	7.100	1.998	0.851	2.845	1.855	3.118	2.610	2.204	1.113	1.962	2.646	3.241	3.462	nan	4.805	1.081	0.984	0.729	1.003	0.720	0.663	6.008
14225	chr8	48736463	48738955	+	0	NA	Intergenic	Intergenic	-63019	NM_011857	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding	6.624	0.597	1.162	2.285	2.162	1.876	5.586	8.633	2.998	2.791	0.647	0.860	7.824	5.612	5.542	7.568	7.213	3.842	0.313	0.587	1.386	0.548	0.934	1.333	6.029
12220	chr6	50202546	50206014	+	0	NA	Intergenic	Intergenic	57489	NM_018769	54722	Mm.248361	NM_018769	ENSMUSG00000029821	Dfna5	2310037D07Rik|4932441K13Rik|Dfna5h|EG14210|Fin15	deafness, autosomal dominant 5 (human)	protein-coding	4.584	1.446	0.775	2.766	3.215	1.670	7.337	7.596	3.154	2.712	2.583	1.637	7.412	7.220	6.905	7.331	5.238	4.635	nan	1.290	0.884	1.690	1.765	0.871	5.149
129	chr1	39632919	39636836	+	0	NA	intron (NM_170597, intron 2 of 3)	intron (NM_170597, intron 2 of 3)	16305	NM_170597	263764	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	10.624	6.092	1.383	6.699	3.104	2.481	6.586	7.230	4.602	9.548	8.051	3.097	8.843	8.651	8.299	11.661	8.001	7.963	2.943	1.444	2.106	3.621	2.034	2.542	10.161
6077	chr16	43494369	43513362	+	0	NA	intron (NM_181058, intron 3 of 6)	intron (NM_181058, intron 3 of 6)	-83669	NR_046026	626693	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	OTTMUSG00000025617	predicted gene 15713	ncRNA	2.977	10.060	6.117	2.598	2.493	1.188	1.481	nan	1.694	1.686	1.067	0.901	1.336	2.002	1.660	2.038	2.066	2.662	3.447	2.963	1.685	1.706	2.278	1.615	2.066
4662	chr14	52580513	52581863	+	0	NA	Intergenic	Intergenic	-85493	NM_001170918	57269	Mm.88822	NM_020512	ENSMUSG00000059887	Olfr1507	MOR244-1|Mor28|Or28	olfactory receptor 1507	protein-coding	2.279	0.233	0.405	0.923	1.572	0.868	2.038	3.235	1.385	1.732	1.123	1.038	2.355	4.056	2.561	1.058	1.454	2.066	0.669	0.255	0.359	0.181	0.531	0.215	1.956
6033	chr16	34079600	34085423	+	0	NA	intron (NM_177357, intron 34 of 59)	intron (NM_177357, intron 34 of 59)	-115508	NM_009471	22247	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	nan	0.923	0.560	1.092	0.724	0.615	1.674	1.136	1.156	1.039	0.246	0.460	1.676	nan	1.455	2.282	1.528	2.146	2.190	1.629	1.103	4.514	2.253	1.503	nan
926	chr1	180334875	180338103	+	0	NA	intron (NM_001081175, intron 2 of 7)	intron (NM_001081175, intron 2 of 7)	-5940	NR_003623	277333	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	13.296	13.954	7.649	13.116	11.952	8.714	9.944	7.988	8.748	14.943	9.050	7.362	10.651	11.554	8.838	12.088	9.886	10.000	7.713	5.687	6.059	7.011	6.396	8.853	13.836
13967	chr8	3423820	3426324	+	0	NA	intron (NM_133962, intron 1 of 19)	B3A|SINE|B2	32064	NM_133962	102098	Mm.170461	NM_133962	ENSMUSG00000004568	Arhgef18	AI467246|D030053O22Rik	rho/rac guanine nucleotide exchange factor (GEF) 18	protein-coding	3.544	0.867	0.365	2.156	2.236	1.566	1.906	3.934	2.804	1.956	6.118	4.027	2.375	2.175	2.030	2.156	1.403	4.203	0.561	0.780	0.523	0.743	0.464	0.372	1.999
15356	chr9	83456785	83458708	+	0	NA	Intergenic	RMER1B|Other|Other	-16619	NM_029434	75782	Mm.199698	NM_027448	ENSMUSG00000032258	Lca5	4930431B11Rik|5730406O13Rik|AV274874|ORF64	Leber congenital amaurosis 5 (human)	protein-coding	1.367	2.200	1.297	1.209	0.604	0.429	0.291	1.504	1.846	1.949	3.846	2.070	1.952	1.688	1.478	1.540	0.867	1.661	0.972	1.040	0.315	0.951	0.671	0.533	5.164
12310	chr6	71928701	71933671	+	0	NA	intron (NM_009088, intron 11 of 33)	intron (NM_009088, intron 11 of 33)	22133	NM_009088	20019	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	3.768	4.812	1.635	2.721	2.759	1.098	7.849	7.169	4.525	4.201	2.304	1.746	7.311	8.901	7.106	7.439	4.607	6.961	0.737	0.597	0.579	0.846	0.327	0.501	4.294
12577	chr6	112895102	112898799	+	0	NA	intron (NM_080448, intron 1 of 21)	intron (NM_080448, intron 1 of 21)	50316	NM_080448	259302	Mm.236401	NM_080448	ENSMUSG00000030257	Srgap3	AI452337|Arhgap14|D130026O08Rik|Gbi|MEGAP|WRP|mKIAA0411	SLIT-ROBO Rho GTPase activating protein 3	protein-coding	2.638	2.394	1.093	1.664	0.855	0.581	4.885	7.029	1.180	1.436	3.085	1.939	3.600	3.454	4.304	4.790	3.189	2.462	3.737	3.015	2.762	5.653	1.806	1.438	nan
1083	chr10	7543100	7545114	+	0	NA	Intergenic	Intergenic	-45693	NM_172784	237253	Mm.206759	NM_172784	ENSMUSG00000019796	Lrp11	1700034J19Rik|6330533B21|9830160H19Rik	low density lipoprotein receptor-related protein 11	protein-coding	0.936	6.323	5.227	0.998	1.609	1.515	1.858	0.434	0.666	0.799	0.565	0.375	1.499	0.793	1.793	1.264	0.673	0.746	1.478	1.370	1.535	0.704	0.959	0.983	0.511
11692	chr5	123437981	123442143	+	0	NA	exon (NM_177582, exon 2 of 9)	exon (NM_177582, exon 2 of 9)	42039	NM_029594	76399	Mm.75049	NM_029594	ENSMUSG00000029437	Il31	1700013B14Rik	interleukin 31	protein-coding	6.332	9.157	3.038	5.823	3.959	2.467	6.045	4.025	4.027	6.528	3.504	2.703	4.857	7.420	5.812	6.475	4.939	6.832	6.337	4.518	3.451	7.476	4.879	4.346	8.083
9763	chr3	121821571	121826278	+	0	NA	Intergenic	Intergenic	-8709	NM_008991	19299	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	5.301	1.987	0.436	7.330	4.181	3.083	5.082	2.836	3.429	3.757	1.455	1.344	4.859	6.926	4.526	nan	3.146	5.759	0.923	1.093	0.771	1.121	nan	0.488	5.349
6137	chr16	57420147	57423641	+	0	NA	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	68617	NM_001040397	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	5.317	4.874	2.276	3.290	2.683	1.395	2.376	2.960	3.475	3.724	3.918	4.729	3.164	4.521	3.281	3.091	2.620	4.268	nan	2.046	0.860	1.860	1.090	0.863	2.332
3024	chr11	116999395	117001025	+	0	NA	Intergenic	Intergenic	-76573	NR_027059	76972	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	2.697	1.556	0.562	2.397	0.959	0.533	nan	nan	1.346	nan	1.304	0.269	1.430	1.511	1.667	2.087	1.677	2.530	0.961	nan	0.306	0.862	0.548	0.604	3.754
1792	chr10	119637404	119638988	+	0	NA	intron (NM_133442, intron 1 of 21)	intron (NM_133442, intron 1 of 21)	123503	NR_045359	75321	Mm.402041	NR_045359	ENSMUSG00000084764	Grip1os2	4930564G21Rik	glutamate receptor interacting protein 1, opposite strand 2	ncRNA	3.459	5.349	1.310	6.327	1.826	2.071	1.890	2.449	2.921	4.640	1.782	1.150	1.745	2.652	3.724	3.321	1.364	nan	2.888	1.021	2.013	2.141	3.246	3.813	3.499
8894	chr2	157382305	157394302	+	0	NA	intron (NM_026968, intron 2 of 2)	intron (NM_026968, intron 2 of 2)	20709	NM_026968	69161	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	nan	2.426	0.862	4.180	3.881	2.087	4.096	6.519	nan	nan	2.775	2.089	nan	6.106	4.753	6.614	5.801	nan	nan	3.184	2.047	6.103	5.228	3.741	8.653
662	chr1	136645950	136646961	+	0	NA	Intergenic	ID_B1|SINE|B4	21554	NM_001160251	226442	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	1.621	1.280	0.375	nan	1.132	1.061	1.386	1.798	1.105	2.146	1.421	1.135	1.481	3.844	2.173	2.012	1.711	1.965	1.100	1.279	0.335	1.267	0.811	0.856	1.537
168	chr1	52173294	52177806	+	0	NA	intron (NM_001081081, intron 14 of 17)	intron (NM_001081081, intron 14 of 17)	55928	NM_001205313	20846	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	7.065	17.845	9.352	7.820	5.333	2.688	3.087	3.312	4.519	5.049	3.721	2.129	3.822	4.250	4.179	6.999	4.189	5.111	nan	2.848	2.093	3.186	2.898	1.924	6.804
12763	chr6	134100231	134103180	+	0	NA	intron (NM_001303102, intron 2 of 8)	MER44A|DNA|TcMar-Tigger	66005	NM_007961	14011	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	6.349	3.075	1.535	4.470	2.783	1.714	1.629	2.436	3.463	3.656	3.672	1.613	1.364	2.958	2.307	3.157	2.652	3.518	nan	2.444	1.688	0.973	1.300	0.733	3.129
6180	chr16	87712817	87717798	+	0	NA	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	16353	NM_007520	12013	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	3.944	nan	0.505	4.252	1.938	0.930	1.284	4.705	3.453	3.169	1.885	1.291	2.742	4.129	3.192	4.504	2.392	5.811	1.159	0.989	0.382	nan	0.778	0.290	3.699
13994	chr8	11259316	11263720	+	0	NA	intron (NR_133670, intron 2 of 52)	intron (NR_133670, intron 2 of 52)	-51287	NM_009932	12827	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	4.061	1.270	0.592	5.863	3.247	1.086	2.655	3.815	3.149	3.378	1.394	0.834	2.954	3.816	3.639	3.882	2.575	4.454	1.039	0.791	0.473	1.342	0.613	0.333	3.369
14926	chr9	25804216	25806740	+	0	NA	Intergenic	Lx3_Mus|LINE|L1	323881	NM_026189	67484	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	1.126	1.361	0.885	0.869	0.477	0.189	0.721	0.657	1.882	1.214	0.166	0.132	1.451	0.900	1.948	3.379	1.443	1.668	0.641	0.444	0.291	0.409	0.224	0.220	2.452
3447	chr12	77355583	77358842	+	0	NA	intron (NR_045554, intron 4 of 11)	intron (NR_045554, intron 4 of 11)	-31652	NM_001252615	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	12.102	4.864	2.217	5.821	5.168	4.090	9.997	6.552	5.643	7.344	6.063	3.370	10.638	11.803	7.628	10.743	11.810	7.174	2.669	2.968	2.237	2.900	3.965	4.097	14.952
10867	chr4	144833635	144836769	+	0	NA	Intergenic	Lx2B2|LINE|L1	-48619	NM_001126316	329993	Mm.297407	NM_001126316	ENSMUSG00000078504	Gm438	-	predicted gene 438	protein-coding	7.824	12.982	3.355	7.892	2.996	1.820	4.179	5.002	4.250	6.054	2.847	1.661	4.182	6.367	7.671	6.435	2.204	7.425	4.734	1.756	0.898	4.505	1.911	1.732	9.870
10030	chr4	44245168	44248297	+	0	NA	Intergenic	Intergenic	-25465	NR_039565	100628618		NR_039565	ENSMUSG00000092677	Mir5106	mir-5106|mmu-mir-5106|mu-mir-5106	microRNA 5106	ncRNA	5.950	7.303	2.448	8.449	5.217	4.249	5.314	5.398	4.460	10.894	5.168	4.431	5.033	6.183	5.568	7.238	3.297	6.652	4.108	2.426	3.646	4.239	3.451	4.520	10.171
8007	chr2	24779359	24791772	+	0	NA	Intergenic	ORR1D1|LTR|ERVL-MaLR	-22413	NM_007579	12287	Mm.4424	NM_007579	ENSMUSG00000004113	Cacna1b	AW050276|AW060892|AW822256|BIII|Cav2.2|Cchn1a|alpha(1B)	calcium channel, voltage-dependent, N type, alpha 1B subunit	protein-coding	9.515	3.114	1.048	5.947	6.190	4.179	9.978	10.955	nan	8.035	4.748	2.833	10.645	10.956	9.899	12.492	9.638	9.386	1.155	0.943	1.034	1.689	1.000	1.158	14.837
12356	chr6	83341512	83344371	+	0	NA	Intergenic	Intergenic	-6543	NM_175277	78653	Mm.391470	NM_175277	ENSMUSG00000045160	Bola3	1810056O20Rik	bolA-like 3 (E. coli)	protein-coding	5.838	1.471	0.370	4.128	2.462	1.168	6.115	5.633	4.543	4.231	7.009	2.437	7.738	7.577	5.969	8.394	5.431	6.542	nan	1.163	0.676	1.955	1.535	0.671	6.644
3156	chr12	4429015	4432539	+	0	NA	intron (NM_010881, intron 1 of 22)	intron (NM_010881, intron 1 of 22)	46405	NM_010881	17977	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	7.625	1.172	0.924	3.692	5.383	3.092	7.259	4.455	4.349	5.295	2.601	1.123	7.858	10.153	4.809	5.216	6.962	6.079	0.884	1.317	0.757	0.606	0.881	0.678	6.438
2728	chr11	97555059	97558176	+	0	NA	intron (NM_018873, intron 1 of 19)	intron (NM_018873, intron 1 of 19)	18509	NM_018873	56013	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	2.009	nan	0.414	2.392	2.643	1.350	3.539	4.556	2.247	3.166	0.645	1.136	2.704	4.643	3.382	4.746	2.434	3.641	1.686	nan	1.416	4.373	nan	nan	2.488
10619	chr4	132029437	132034767	+	0	NA	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	16976	NM_001128606	269587	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	4.908	0.731	0.602	3.662	7.853	5.184	3.858	7.333	5.810	7.454	4.120	2.818	5.677	7.667	nan	5.336	4.254	5.323	0.783	0.925	1.058	0.965	0.727	0.801	4.541
8594	chr2	119989909	119991122	+	0	NA	intron (NM_011941, intron 1 of 29)	intron (NM_011941, intron 1 of 29)	17816	NM_011941	26390	Mm.330501	NM_011941	ENSMUSG00000033902	Mapkbp1	2810483F24Rik|AW123212|JNKBP-1|Jnkbp1|mKIAA0596	mitogen-activated protein kinase binding protein 1	protein-coding	3.233	0.532	0.476	2.012	2.755	1.679	4.116	2.852	2.355	2.310	2.197	2.787	3.887	4.756	4.071	4.903	5.254	4.015	1.094	0.997	1.096	0.482	0.639	0.286	3.286
3992	chr13	37969370	37975899	+	0	NA	3' UTR (NM_025965, exon 8 of 8)	3' UTR (NM_025965, exon 8 of 8)	21556	NM_025965	107513	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	5.067	nan	0.609	4.501	3.399	1.518	4.762	4.216	4.271	4.936	2.626	1.819	6.157	8.075	7.357	7.482	3.618	5.887	3.844	2.790	1.558	4.831	2.810	1.547	7.915
3439	chr12	76567090	76590829	+	0	NA	TTS (NM_153804)	TTS (NM_153804)	-31034	NR_046044	100504549	Mm.440349	NR_046044		AI463170	-	expressed sequence AI463170	ncRNA	5.330	0.679	0.563	1.904	1.936	1.126	5.114	5.127	2.881	2.732	0.835	1.041	7.318	6.035	5.819	nan	6.483	4.111	1.086	0.811	0.551	0.994	1.031	0.808	4.330
124	chr1	39423510	39426193	+	0	NA	intron (NM_018775, intron 2 of 19)	HAL1b|LINE|L1	53896	NM_018775	54610	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	9.517	8.328	2.983	6.389	4.556	2.538	6.104	5.876	5.100	7.481	6.750	4.000	5.750	7.071	5.902	11.837	6.612	6.949	4.099	3.237	2.198	4.976	3.647	2.546	10.809
9821	chr3	135291182	135294150	+	0	NA	intron (NM_001172055, intron 5 of 9)	intron (NM_001172055, intron 5 of 9)	11445	NM_027208	69772	Mm.45121	NM_027208	ENSMUSG00000028167	Bdh2	1810026B04Rik|Dhrs6	3-hydroxybutyrate dehydrogenase, type 2	protein-coding	4.493	5.039	1.626	3.484	2.309	1.114	4.650	3.700	3.429	3.459	6.971	1.966	4.980	5.466	5.795	4.734	4.010	6.482	0.657	1.110	0.330	0.657	0.262	0.222	4.571
1429	chr10	74889875	74891660	+	0	NA	Intergenic	Intergenic	-76464	NM_010311	14687	Mm.32595	NM_010311	ENSMUSG00000040009	Gnaz	AI847979|Gz	guanine nucleotide binding protein, alpha z subunit	protein-coding	1.326	2.190	2.196	nan	0.726	0.407	0.490	2.411	0.875	0.599	0.597	0.760	0.964	0.709	nan	1.103	1.205	0.926	nan	1.408	1.126	0.886	6.794	5.798	0.811
15518	chr9	109833614	109835757	+	0	NA	intron (NM_018757, intron 2 of 6)	B1_Mus2|SINE|Alu	1891	NM_018757	54369	Mm.12951	NM_018757	ENSMUSG00000032478	Nme6	nm23-M6	NME/NM23 nucleoside diphosphate kinase 6	protein-coding	7.511	9.939	2.540	8.170	4.959	3.621	4.740	5.780	nan	8.598	5.631	3.280	4.344	6.502	5.348	7.351	4.755	5.449	4.331	4.489	4.850	5.539	5.334	5.498	12.470
11836	chr5	137441948	137443571	+	0	NA	intron (NM_011741, intron 28 of 87)	RSINE1|SINE|B4	34305	NM_011741	22635	Mm.7984	NM_011741	ENSMUSG00000079173	Zan	Zan-test	zonadhesin	protein-coding	3.437	1.694	0.558	4.836	1.721	0.319	1.465	1.323	1.935	2.629	0.916	0.315	1.246	3.192	2.559	3.703	1.938	3.723	0.576	0.774	0.496	1.019	nan	0.443	3.573
11742	chr5	125921503	125922705	+	0	NA	Intergenic	MTC|LTR|ERVL-MaLR	389686	NM_001190352	208151	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding	4.387	14.725	2.536	5.223	1.758	1.189	6.255	4.070	2.409	8.718	3.260	1.879	3.085	4.636	6.700	8.911	nan	5.412	4.846	1.947	3.214	4.658	3.547	3.917	9.578
11436	chr5	92663316	92666300	+	0	NA	intron (NM_177230, intron 4 of 24)	RMER17B|LTR|ERVK	10319	NM_177230	320696	Mm.209991	NM_177230	ENSMUSG00000050050	Ccdc158	4932413O14Rik	coiled-coil domain containing 158	protein-coding	2.317	1.120	0.350	2.054	1.469	1.126	1.139	0.884	1.386	1.139	1.263	0.788	0.608	1.010	1.068	1.343	0.674	1.412	6.101	4.674	4.105	7.882	6.811	6.534	1.427
4259	chr13	76010145	76014965	+	0	NA	intron (NM_001131069, intron 1 of 3)	intron (NM_001131069, intron 1 of 3)	6007	NM_178916	218341	Mm.266515	NM_178916	ENSMUSG00000043190	Rfesd	AI256775|D030068K09	Rieske (Fe-S) domain containing	protein-coding	4.856	1.361	0.831	3.376	4.655	3.287	5.495	1.516	3.662	3.297	2.109	1.704	6.388	6.209	5.518	nan	1.572	5.461	1.337	0.566	0.452	1.007	0.908	0.972	3.937
2536	chr11	80242183	80243262	+	0	NA	intron (NM_021536, intron 10 of 18)	intron (NM_021536, intron 10 of 18)	33667	NM_021536	59040	Mm.489674	NM_021536	ENSMUSG00000017686	Rhot1	2210403N23Rik|AA415293|AF244542|AI834919|Arht1|C430039G08Rik|Miro1	ras homolog family member T1	protein-coding	10.598	14.013	3.005	15.294	8.072	9.068	9.716	9.306	8.417	20.423	8.028	6.371	8.459	13.167	12.280	13.276	5.883	12.003	6.328	1.964	4.899	6.832	3.105	5.082	18.968
5856	chr16	19059163	19067944	+	0	NA	Intergenic	Intergenic	186803	NM_010435	15260	Mm.15694	NM_010435	ENSMUSG00000022702	Hira	AA138857|D16Ertd95e|Gm15797|N28177|OTTMUSG00000026264|Tuple1	histone cell cycle regulator	protein-coding	0.519	10.427	5.595	0.770	0.413	0.197	0.349	0.451	0.614	nan	0.266	0.159	0.251	0.394	0.559	nan	0.587	0.582	0.535	1.202	0.675	0.347	0.238	0.253	0.374
4988	chr14	122108020	122122205	+	0	NA	intron (NM_080556, intron 1 of 16)	B2_Mm2|SINE|B2	8030	NM_080556	68059	Mm.275191	NM_080556	ENSMUSG00000025544	Tm9sf2	1500001N15Rik|AA536814|D14Ertd64e|P76	transmembrane 9 superfamily member 2	protein-coding	4.103	1.642	0.967	2.745	1.948	1.220	3.721	5.638	3.169	3.895	3.952	1.346	3.926	5.331	nan	5.469	2.655	3.848	1.253	0.893	0.762	1.252	1.194	0.866	6.035
6875	chr17	79996839	80018798	+	0	NA	Intergenic	RMER10A|LTR|ERVL	54450	NM_144802	72692	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	4.461	1.584	0.886	4.624	4.494	2.807	6.380	5.401	nan	6.473	1.448	1.281	6.138	8.233	7.168	nan	7.389	7.975	1.103	0.772	0.726	0.929	0.906	0.833	5.965
3611	chr12	88624327	88626272	+	0	NA	Intergenic	ORR1D1|LTR|ERVL-MaLR	-169205	NM_001198587	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	3.416	1.003	0.271	3.672	3.003	1.457	4.850	1.738	2.562	4.529	0.863	1.161	4.186	5.376	3.706	4.649	6.021	4.398	0.618	0.366	0.510	0.430	0.296	0.369	4.511
2483	chr11	76302402	76304459	+	0	NA	intron (NM_008750, intron 1 of 7)	L1MC4|LINE|L1	59694	NM_183263	67390	Mm.24886	NM_183263	ENSMUSG00000038046	Rnmtl1	4833420N02Rik|AI255153|HC90|Mrm3	RNA methyltransferase like 1	protein-coding	2.893	2.132	0.669	2.545	1.325	0.463	2.099	2.136	2.585	2.076	1.115	1.039	2.810	2.305	3.272	4.357	2.491	4.286	2.071	1.327	nan	2.214	1.018	0.613	3.975
12420	chr6	88271614	88273345	+	0	NA	intron (NM_023060, intron 6 of 6)	intron (NM_023060, intron 6 of 6)	50211	NM_019964	56691	Mm.272871	NM_019964	ENSMUSG00000048206	Dnajb8	1700016F14Rik|1700031F10Rik|AI326313|mDj6	DnaJ heat shock protein family (Hsp40) member B8	protein-coding	3.005	0.691	0.202	2.139	1.005	0.796	6.363	8.102	3.617	3.463	2.336	2.102	6.895	4.971	5.076	8.753	4.921	4.859	nan	1.012	0.425	0.714	0.394	0.328	2.401
9480	chr3	89712666	89718207	+	0	NA	intron (NM_001038587, intron 1 of 14)	CpG	414	NM_001038587	56417	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	5.857	7.971	2.473	6.660	3.243	2.830	4.531	6.755	3.495	5.421	4.366	2.256	5.487	8.030	5.695	nan	3.907	4.921	5.126	1.941	2.345	5.712	4.422	5.497	7.360
9782	chr3	122806854	122807974	+	0	NA	intron (NM_153422, intron 11 of 20)	intron (NM_153422, intron 11 of 20)	-5434	NR_045168	71647	Mm.449992	NR_045168	ENSMUSG00000106583	4930447N08Rik	-	RIKEN cDNA 4930447N08 gene	ncRNA	1.881	0.868	0.557	1.638	1.004	0.816	1.780	1.935	1.320	1.939	2.632	1.290	2.003	3.102	1.658	1.321	1.166	1.086	0.683	0.605	0.599	0.281	nan	0.239	1.418
6098	chr16	45809347	45812619	+	0	NA	intron (NM_001252442, intron 2 of 18)	intron (NM_001252442, intron 2 of 18)	33395	NM_153412	208177	Mm.211477	NM_153412	ENSMUSG00000033149	Phldb2	AV253284|C820004H04Rik|LL5b|LL5beta	pleckstrin homology like domain, family B, member 2	protein-coding	4.330	0.533	0.238	5.298	3.135	1.465	3.091	3.707	4.871	5.709	1.042	1.610	4.303	5.645	4.802	6.674	3.649	6.955	1.537	1.306	0.798	1.723	1.220	0.643	3.725
11699	chr5	123804688	123807072	+	0	NA	intron (NM_001042421, intron 51 of 63)	intron (NM_001042421, intron 51 of 63)	56154	NM_001042421	208628	Mm.441089	NM_001042421	ENSMUSG00000029414	Kntc1	D330012D13|jgl	kinetochore associated 1	protein-coding	3.149	0.826	0.438	3.289	1.251	1.058	3.955	5.517	2.195	nan	5.917	1.881	4.301	5.189	4.827	4.169	3.721	3.884	nan	0.633	0.581	0.717	nan	0.425	nan
11386	chr5	87169688	87171754	+	0	NA	Intergenic	Intergenic	-30381	NM_009467	22238	Mm.291575	NM_009467	ENSMUSG00000054630	Ugt2b5	AI118071|M-1|Udpgt-3|Udpgt2b5|Ugt2b17	UDP glucuronosyltransferase 2 family, polypeptide B5	protein-coding	0.530	2.327	0.968	0.544	0.049	0.119	1.670	3.081	0.676	0.640	6.035	3.780	2.204	1.444	0.894	0.838	0.712	0.939	0.603	0.312	0.297	0.517	0.163	0.090	0.299
8202	chr2	36088769	36095091	+	0	NA	intron (NM_001083125, intron 5 of 8)	intron (NM_001083125, intron 5 of 8)	12130	NM_001083126	16874	Mm.12881	NM_008500	ENSMUSG00000026890	Lhx6	Lhx6.1	LIM homeobox protein 6	protein-coding	7.779	1.342	0.583	4.976	2.861	1.162	7.210	6.207	4.238	5.396	1.162	0.955	7.775	7.723	6.426	10.436	7.758	7.764	0.929	0.912	0.556	1.102	0.638	0.241	11.927
6679	chr17	46815897	46818594	+	0	NA	intron (NM_001100452, intron 4 of 10)	B2_Mm1a|SINE|B2	14168	NM_001100452	210982	Mm.37642	NM_001100452	ENSMUSG00000036568	Gltscr1l	mKIAA0240	GLTSCR1-like	protein-coding	10.478	7.371	3.422	7.439	6.818	4.916	12.328	9.949	4.593	6.801	6.189	3.648	6.787	12.804	9.237	10.292	7.992	6.790	4.179	5.505	5.068	3.850	4.930	3.942	12.984
2259	chr11	59627157	59628641	+	0	NA	Intergenic	Intergenic	14933	NM_001011740	257886	Mm.457883	NM_001011740	ENSMUSG00000044061	Olfr225	MOR256-51	olfactory receptor 225	protein-coding	1.667	0.502	0.334	1.620	2.236	1.854	0.830	1.343	1.501	1.784	0.676	0.511	1.551	3.958	2.206	2.024	2.718	1.251	nan	1.122	0.422	1.232	0.628	0.567	nan
10507	chr4	124538473	124540694	+	0	NA	Intergenic	B1_Mur2|SINE|Alu	-29596	NR_045819	108809	Mm.250313	NR_045819		4933407E24Rik	-	RIKEN cDNA 4933407E24 gene	ncRNA	0.247	1.244	0.552	0.360	0.369	0.054	0.150	0.080	0.128	0.381	0.084		0.147	0.123	nan	0.297	0.157	0.194	5.957	3.073	5.477	8.274	5.346	7.815	0.729
11364	chr5	77339075	77340610	+	0	NA	intron (NM_153798, intron 17 of 24)	B1F|SINE|Alu	29358	NM_153798	231329	Mm.273217	NM_153798	ENSMUSG00000029250	Polr2b	Pol2rb|Rpb140|Rpb2	polymerase (RNA) II (DNA directed) polypeptide B	protein-coding	3.711	0.476	0.490	1.211	1.093	0.644	3.313	2.533	1.697	1.591	1.421	0.880	2.676	3.766	4.114	3.918	3.166	3.454	0.550	0.621	0.555	0.755	1.001	0.415	3.754
10990	chr4	154856947	154868658	+	0	NA	intron (NM_172878, intron 6 of 6)	RMER17C2|LTR|ERVK	6602	NM_172878	242800	Mm.72944	NM_172878	ENSMUSG00000046637	Ttc34	4932418L02|B230396O12Rik	tetratricopeptide repeat domain 34	protein-coding	6.852	5.947	2.080	7.832	4.481	2.797	5.049	6.249	4.454	7.088	4.548	2.822	4.570	6.852	6.528	7.876	3.987	6.532	3.236	1.594	1.516	2.802	2.257	2.272	9.651
7694	chr19	29979739	29984148	+	0	NA	Intergenic	ORR1F|LTR|ERVL-MaLR	-21847	NM_025741	66745	Mm.158128	NM_025741	ENSMUSG00000024815	Trpd52l3	4931412G03Rik	tumor protein D52-like 3	protein-coding	3.291	0.501	0.474	nan	2.393	1.592	3.827	2.405	4.827	4.141	nan	1.100	4.222	5.356	4.376	4.631	5.924	5.068	nan	0.338	0.239	0.400	nan	0.195	2.807
2212	chr11	54538210	54543282	+	0	NA	intron (NM_175258, intron 1 of 27)	intron (NM_175258, intron 1 of 27)	17901	NM_001252496	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	6.348	10.116	4.450	5.815	3.735	1.944	3.103	3.025	4.610	4.624	2.177	1.380	3.544	4.606	4.132	4.175	2.730	6.822	nan	1.732	1.444	2.301	1.446	1.040	3.665
12235	chr6	51830787	51832813	+	0	NA	Intergenic	Intergenic	180749	NM_018773	54353	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	4.211	1.378	0.973	5.243	0.909	0.636	0.897	1.237	2.254	2.348	1.345	1.077	1.260	2.072	1.829	2.563	1.695	3.226	nan	0.637	0.265	0.708	0.323	0.286	1.947
6694	chr17	47597601	47601957	+	0	NA	TTS (NM_007632)	TTS (NM_007632)	6312	NM_007632	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	1.953	0.649	0.332	1.603	1.228	0.761	4.222	3.922	0.987	1.051	1.969	1.639	1.410	3.308	1.995	1.738	nan	1.355	5.906	3.125	1.667	3.575	5.659	4.936	2.663
1886	chr11	3268206	3272339	+	0	NA	intron (NR_037301, intron 1 of 1)	PB1D10|SINE|Alu	-3886	NM_007879	13494	Mm.3250	NM_007879	ENSMUSG00000020457	Drg1	AA408859|AI132520|Nedd3	developmentally regulated GTP binding protein 1	protein-coding	4.835	1.485	0.436	7.470	3.066	1.479	3.374	5.870	4.670	5.970	7.809	2.307	4.944	8.891	6.801	8.193	3.348	7.558	1.886	nan	0.682	2.031	1.362	0.988	8.979
7222	chr18	46885812	46888713	+	0	NA	intron (NM_029008, intron 13 of 19)	intron (NM_029008, intron 13 of 19)	-34553	NM_001033446	381142	Mm.329423	NM_001033446	ENSMUSG00000073568	Arl14epl	Gm949	ADP-ribosylation factor-like 14 effector protein-like	protein-coding	1.571	1.005	0.763	4.030	1.658	1.747	1.023	1.778	1.412	2.033	0.474	0.494	0.781	1.416	1.664	1.723	1.496	nan	3.967	2.057	2.364	4.380	6.075	7.392	2.626
9627	chr3	103590442	103598211	+	0	NA	intron (NM_001276681, intron 3 of 7)	intron (NM_001276681, intron 3 of 7)	18200	NM_001276681	54524	Mm.88818	NM_018800	ENSMUSG00000027849	Syt6	3110037A08Rik|AW048930|sytVI	synaptotagmin VI	protein-coding	6.958	5.629	1.682	6.959	5.623	3.752	7.895	7.320	4.758	6.044	5.404	3.290	6.425	8.000	nan	6.490	6.378	6.565	2.249	2.206	2.150	2.581	1.767	1.783	7.256
940	chr1	182292435	182296782	+	0	NA	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-6226	NR_015458	67330	Mm.331019	NR_015458	ENSMUSG00000100147	1700047M11Rik	-	RIKEN cDNA 1700047M11 gene	ncRNA	7.227	13.074	5.518	7.445	4.299	2.384	4.500	4.884	5.386	4.823	2.951	2.283	5.587	6.985	6.536	9.512	6.526	8.031	4.544	2.627	1.744	5.174	2.321	2.582	5.338
12759	chr6	134040373	134043407	+	0	NA	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	6190	NM_007961	14011	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	2.138	1.230	0.620	1.317	0.873	0.500	1.661	2.874	1.049	1.249	5.928	1.413	1.153	1.238	nan	2.206	2.095	1.491	nan	0.904	0.812	0.869	0.657	0.366	nan
15807	chrX	131134647	131136467	+	0	NA	Intergenic	L1_Mus1|LINE|L1	1385815	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	5.786	6.228	2.133	5.524	4.242	2.005	3.601	4.891	3.501	4.570	3.492	2.436	3.572	5.313	5.286	6.603	4.244	4.969	3.609	2.361	1.879	3.772	2.268	2.385	6.527
685	chr1	137690198	137691564	+	0	NA	Intergenic	Lx8|LINE|L1	-275574	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	4.526	2.745	1.049	3.452	2.260	0.490	5.248	6.246	2.119	1.943	6.839	4.478	5.263	4.830	4.403	3.741	3.483	3.552	1.114	0.768	0.528	1.153	1.283	0.735	2.793
10192	chr4	71783668	71785014	+	0	NA	Intergenic	MERVL-int|LTR|ERVL	416552	NM_011599	21885	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	4.329	1.329	1.099	1.919	1.771	0.971	2.027	2.934	1.031	0.706	1.245	0.253	1.239	3.350	1.850	nan	0.340	2.390	4.534	3.275	0.827	nan	3.731	2.608	3.090
5313	chr15	73577224	73579874	+	0	NA	Intergenic	Intergenic	17977	NM_001168255	106068	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	5.658	16.267	3.665	8.099	3.300	1.892	4.820	6.578	3.433	8.552	nan	1.598	5.668	7.447	7.247	7.165	3.428	7.761	8.761	3.575	3.114	11.002	6.135	4.665	10.298
7809	chr19	45665922	45668419	+	0	NA	Intergenic	Intergenic	-6977	NM_013907	30838	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	2.820	1.760	0.268	3.553	0.571	0.736	1.409	2.593	2.581	2.440	5.558	2.091	4.340	3.738	4.052	7.208	3.902	4.604	0.549	0.421	0.745	0.975	0.246	0.455	9.572
4360	chr13	103660003	103662593	+	0	NA	intron (NR_136924, intron 1 of 3)	URR1B|DNA|hAT-Charlie	46335	NR_136924	102632492	Mm.383874	NR_136924		Gm30551	Gm30710	predicted gene, 30551	ncRNA	4.150	1.312	1.237	3.997	2.699	1.162	1.507	3.095	2.999	2.516	2.015	1.803	1.416	2.245	2.150	2.545	1.850	4.323	1.911	1.351	1.000	nan	1.354	0.953	1.751
3823	chr13	5712120	5714668	+	0	NA	Intergenic	MER131|SINE?|SINE?	144698	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	6.009	5.672	3.205	5.630	5.367	2.632	2.794	3.801	5.192	5.286	4.090	2.620	4.250	5.915	4.451	4.732	2.490	6.886	2.581	2.097	0.686	2.025	2.205	1.883	3.621
2377	chr11	69608602	69610218	+	0	NA	Intergenic	Intergenic	-3450	NM_013415	11932	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	4.469	7.216	2.225	6.986	2.100	0.560	5.670	5.147	3.815	4.816	1.521	1.710	4.654	6.190	7.643	8.923	3.938	6.544	1.909	0.940	0.864	2.880	nan	1.128	8.828
3975	chr13	37196670	37198847	+	0	NA	Intergenic	Intergenic	-147514	NM_001166391	74145	Mm.235105	NM_028784	ENSMUSG00000039109	F13a1	1200014I03Rik|AI462306|F13a	coagulation factor XIII, A1 subunit	protein-coding	2.814	nan	0.345	1.931	1.749	0.903	1.839	3.600	4.004	4.031	1.360	0.620	2.355	3.567	3.237	3.975	2.891	2.903	0.668	0.347	0.211	0.591	0.239	0.158	2.376
14158	chr8	37182901	37186924	+	0	NA	Intergenic	Intergenic	-160674	NR_126063	414128	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	6.290	4.544	2.594	3.297	3.188	1.854	2.162	4.247	3.252	4.488	2.203	1.940	1.927	3.186	3.616	4.365	3.501	4.548	1.131	1.747	1.331	1.182	0.902	0.482	nan
13441	chr7	97518171	97523066	+	0	NA	intron (NM_027256, intron 15 of 22)	intron (NM_027256, intron 15 of 22)	39662	NM_027256	101861	Mm.27383	NM_027256	ENSMUSG00000025133	Ints4	2610034N24Rik|AA692684|AW493223	integrator complex subunit 4	protein-coding	2.725	0.965	0.664	2.641	1.810	0.626	5.092	6.096	2.386	2.448	0.680	1.546	5.018	5.493	6.110	5.240	4.086	4.055	nan	0.789	0.401	1.003	0.544	0.584	2.797
8198	chr2	35832706	35835266	+	0	NA	intron (NM_029774, intron 6 of 9)	MER58A|DNA|hAT-Charlie	14796	NR_040618	77665	Mm.400558	NR_040618	ENSMUSG00000086449	9030204H09Rik	-	RIKEN cDNA 9030204H09 gene	ncRNA	5.335	5.160	1.363	7.095	4.286	4.557	4.792	7.168	4.139	11.092	2.039	2.079	7.270	6.900	6.393	9.469	5.352	7.638	5.650	1.743	3.777	4.470	4.503	5.724	12.103
2500	chr11	77701537	77704271	+	0	NA	intron (NM_001024205, intron 2 of 3)	intron (NM_001024205, intron 2 of 3)	16765	NM_001024205	68564	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	nan	12.931	9.804	0.985	0.316	0.320	nan	0.536	0.481	0.346	0.426	0.245	0.270	nan	nan	nan	0.782	nan	0.709	0.946	nan	0.852	1.314	0.931	0.561
3937	chr13	33052478	33071309	+	0	NA	Intergenic	ETnERV-int|LTR|ERVK	-22210	NM_173052	282663	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	5.338	nan	1.089	4.733	4.066	2.153	nan	nan	4.582	nan	4.823	1.863	2.825	3.133	3.071	4.604	2.743	7.882	0.739	1.100	0.697	0.709	0.613	0.423	5.646
3162	chr12	5282993	5285566	+	0	NA	intron (NM_001164493, intron 2 of 13)	intron (NM_001164493, intron 2 of 13)	91403	NM_001164493	208439	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	7.782	0.938	0.627	3.915	5.627	3.959	7.911	4.812	3.196	4.926	0.590	0.829	6.975	7.519	5.587	4.257	6.412	5.798	0.765	0.785	0.664	0.555	1.116	0.626	4.891
3895	chr13	24369731	24373218	+	0	NA	intron (NM_001284519, intron 2 of 17)	intron (NM_001284519, intron 2 of 17)	-43648	NM_007717	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	5.531	1.755	0.623	6.348	3.559	1.871	4.921	6.526	3.606	6.383	3.734	3.898	5.384	6.351	6.149	5.937	3.744	6.220	6.830	3.875	4.419	8.004	6.968	7.011	9.359
3303	chr12	41168558	41169753	+	0	NA	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	145065	NM_053122	93757	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	1.875	nan	0.732	1.299	0.906	0.103	0.936	0.965	1.194	1.217	0.442	0.697	1.794	2.992	2.476	2.756	2.500	1.886	nan	0.819	0.410	0.726	0.462	0.330	2.429
351	chr1	80335034	80338290	+	0	NA	intron (NM_001313728, intron 1 of 16)	intron (NM_001313728, intron 1 of 16)	4028	NM_001313728	26554	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	9.437	12.044	3.667	8.657	5.424	4.210	7.105	6.326	4.412	14.988	5.569	2.686	8.386	8.131	7.364	12.401	6.533	9.211	5.623	2.874	3.426	6.183	nan	5.206	11.903
12294	chr6	67215898	67219480	+	0	NA	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	-49290	NM_001113564	66870	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	6.763	10.491	4.081	7.072	3.078	1.679	8.362	7.600	4.172	8.379	7.220	3.223	7.359	8.258	9.633	10.898	6.447	7.876	4.891	2.487	2.869	5.184	3.046	3.913	10.687
8691	chr2	132112031	132112981	+	0	NA	intron (NM_018824, intron 1 of 15)	B3|SINE|B2	32602	NM_018824	54338	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	4.026	1.042	0.595	2.699	1.953	1.712	2.686	1.863	3.767	3.231	2.858	2.361	3.896	3.962	2.737	3.539	2.477	4.431	nan	0.629	0.361	2.073	0.369	0.292	4.618
11018	chr5	9361443	9362951	+	0	NA	intron (NM_172706, intron 1 of 21)	intron (NM_172706, intron 1 of 21)	-13507	NR_030537	100124492		NR_030537	ENSMUSG00000077896	Mir879	Mirn879|mir-879|mmu-mir-879	microRNA 879	ncRNA	0.881	0.662	0.855	0.265	0.551	0.298	0.399	0.304	0.208	0.590	0.268	0.405	0.326	0.444	0.499	0.571	0.761	0.720	2.130	4.680	2.418	4.099	4.422	3.379	0.367
6337	chr17	12961552	12963062	+	0	NA	Intergenic	Intergenic	-1582	NM_009338	110460	Mm.439711	NM_009338	ENSMUSG00000023832	Acat2	AW742799|Tcp-1x|Tcp1-rs1	acetyl-Coenzyme A acetyltransferase 2	protein-coding	3.284	6.119	1.723	5.946	1.850	1.272	6.333	4.969	3.697	9.189	4.742	1.233	3.536	5.502	6.138	8.479	1.999	5.665	nan	1.254	0.990	3.873	2.022	2.275	12.875
9127	chr2	181404704	181406715	+	0	NA	intron (NM_027656, intron 2 of 3)	intron (NM_027656, intron 2 of 3)	18679	NM_027656	72147	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	2.824	1.330	0.669	7.332	0.711	0.500	1.421	1.043	2.055	4.556	0.806	0.168	1.219	1.889	2.195	2.727	0.915	4.817	0.913	0.636	0.731	0.817	0.413	0.565	5.904
1854	chr10	127360805	127363181	+	0	NA	intron (NM_010565, intron 1 of 1)	B2_Mm2|SINE|B2	8555	NM_010565	16325	Mm.2594	NM_010565	ENSMUSG00000025405	Inhbc	-	inhibin beta-C	protein-coding	3.850	nan	0.697	2.132	1.699	0.931	3.429	3.628	2.129	1.998	8.513	3.586	3.627	2.546	2.879	2.915	4.221	3.116	1.536	1.601	0.886	2.594	nan	1.040	2.154
1498	chr10	80065052	80067047	+	0	NA	intron (NM_183426, intron 14 of 31)	B3|SINE|B2	12030	NM_001037741	625249	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	9.125	14.657	4.172	7.744	3.590	1.077	6.086	7.387	4.331	6.058	4.019	3.599	5.226	7.360	8.144	8.968	3.865	8.196	5.304	2.257	1.464	6.510	3.172	1.720	9.815
13254	chr7	72563495	72566179	+	0	NA	Intergenic	Intergenic	-258242	NM_001024703	244049	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	4.345	0.898	0.912	4.876	5.270	3.718	1.824	2.330	3.274	2.679	1.387	2.181	2.016	2.689	1.476	2.227	2.580	4.040	0.808	1.596	1.292	1.040	1.088	1.100	2.140
6863	chr17	75874584	75876699	+	0	NA	intron (NR_033456, intron 2 of 4)	intron (NR_033456, intron 2 of 4)	14618	NR_033456	100043885	Mm.127562	NR_033456		Gm4710	-	predicted gene 4710	ncRNA	0.962	9.513	7.039	0.853	0.437	0.321	nan	1.532	nan	0.859	0.549	0.641	0.312	1.021	1.752	1.260	0.849	1.278	0.470	0.652	0.447	0.343	0.364	0.427	0.473
5874	chr16	20699327	20702165	+	0	NA	intron (NM_133778, intron 5 of 5)	B1_Mus1|SINE|Alu	5689	NM_133778	78408	Mm.196512	NM_133778	ENSMUSG00000050821	Fam131a	2900046G09Rik	family with sequence similarity 131, member A	protein-coding	0.372	1.582	0.632	0.527	0.336	0.303	0.704	1.214	0.776	nan	0.691	1.060	0.402	0.853	1.125	nan	0.465	0.989	0.771	0.622	1.037	3.682	0.322	0.464	0.829
13590	chr7	117911444	117913612	+	0	NA	Intergenic	MIRb|SINE|MIR	203619	NM_170669	267019	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	8.163	4.472	1.141	12.064	2.378	1.162	5.669	10.706	4.508	9.899	4.282	4.333	8.258	nan	6.334	5.128	6.122	7.693	4.946	2.423	2.582	6.570	4.877	4.555	15.495
11052	chr5	21150497	21153163	+	0	NA	Intergenic	L1Md_T|LINE|L1	-34437	NM_175437	212167	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	7.198	4.207	1.860	5.204	5.421	2.615	7.408	4.788	3.754	6.906	3.268	1.797	5.648	10.512	6.035	6.499	5.141	5.891	4.489	2.109	1.920	4.351	3.917	4.098	7.947
4620	chr14	45607997	45610096	+	0	NA	intron (NM_001039106, intron 7 of 11)	intron (NM_001039106, intron 7 of 11)	49007	NR_039593	100628600		NR_039593	ENSMUSG00000093167	Mir5131	mmu-mir-5131|mu-mir-5131	microRNA 5131	ncRNA	7.009	11.325	2.635	8.367	1.668	0.735	1.578	2.148	3.038	3.791	3.336	1.440	1.696	3.557	3.342	3.551	1.812	4.307	2.399	2.200	1.416	3.961	1.313	0.774	6.049
901	chr1	174442865	174446103	+	0	NA	Intergenic	Intergenic	-4141	NM_207694	546747	Mm.380253	NM_207694	ENSMUSG00000066671	Olfr220	EG546747|MOR103-13P|MOR103-17|Olfr220-ps1|Olfr413-ps1	olfactory receptor 220	protein-coding	8.812	9.155	2.965	7.369	4.274	1.806	5.169	3.759	4.353	6.805	2.785	1.301	4.526	6.065	5.709	9.771	3.271	4.934	0.877	2.209	1.261	2.848	0.950	0.245	8.770
2191	chr11	53162951	53165845	+	0	NA	intron (NM_177059, intron 10 of 15)	intron (NM_177059, intron 10 of 15)	-44342	NR_046047	790909	Mm.404626	NR_046047	ENSMUSG00000087668	Gm11186	OTTMUSG00000000039	predicted gene 11186	ncRNA	11.630	9.422	3.763	10.585	9.288	7.189	11.200	11.618	6.723	17.721	8.888	6.498	8.864	13.024	9.075	11.207	9.045	9.124	nan	4.325	4.792	6.360	5.644	5.632	12.547
14375	chr8	82838033	82840324	+	0	NA	Intergenic	Intergenic	-24178	NM_177378	330812	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	5.427	nan	0.454	2.887	1.930	0.919	nan	4.201	nan	3.517	0.920	0.904	4.901	5.760	4.020	nan	6.077	4.018	0.779	1.579	0.856	nan	0.452	0.211	4.664
8322	chr2	68973053	68977794	+	0	NA	intron (NM_172856, intron 3 of 9)	intron (NM_172856, intron 3 of 9)	113982	NM_001347161	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	4.822	1.413	0.619	4.822	1.653	0.575	1.740	3.789	3.289	3.794	1.972	1.551	2.219	2.261	2.489	3.675	2.265	4.713	1.161	1.197	0.686	1.936	0.862	0.623	2.892
12382	chr6	86421526	86425304	+	0	NA	intron (NM_001164079, intron 5 of 9)	intron (NM_001164079, intron 5 of 9)	-14983	NM_146170	232196	Mm.404040	NM_146170	ENSMUSG00000046679	C87436	-	expressed sequence C87436	protein-coding	8.527	7.022	2.098	6.221	4.192	1.681	9.027	9.559	4.957	6.416	3.816	2.065	9.878	9.804	12.206	14.221	7.784	8.521	nan	3.138	2.484	6.119	3.416	2.922	11.565
10830	chr4	141451561	141456660	+	0	NA	intron (NM_009541, intron 2 of 15)	MIR|SINE|MIR	9437	NM_009541	22642	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	nan	1.290	0.505	1.093	0.488	0.267	0.408	0.897	nan	0.554	0.435	0.317	0.382	0.489	0.665	0.740	0.417	nan	3.361	1.978	1.759	6.661	nan	3.244	0.958
10921	chr4	149969693	149975171	+	0	NA	Intergenic	Lx|LINE|L1	-17426	NM_029035	74646	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	3.359	nan	0.639	2.525	2.700	1.691	3.014	2.969	3.038	3.047	1.477	0.843	2.768	3.671	3.479	4.433	2.898	4.191	2.848	1.332	1.130	3.754	1.505	1.711	4.992
1056	chr1	195170353	195173565	+	0	NA	intron (NM_007758, intron 1 of 18)	L1MA4A|LINE|L1	4756	NM_007758	12902	Mm.235387	NM_007758	ENSMUSG00000026616	Cr2	C3DR|CD21|CD35|Cr-1|Cr-2|Cr1	complement receptor 2	protein-coding	0.846	1.754	0.933	0.447	0.843	0.191	0.551	0.843	0.686	0.803	0.636	0.592	0.576	0.774	0.608	nan	0.832	0.696	1.572	1.479	1.086	3.039	nan	1.642	nan
11299	chr5	66460439	66461931	+	0	NA	intron (NM_001310626, intron 4 of 15)	RMER15|LTR|ERVL	-123520	NM_001201416	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	4.889	9.343	4.768	4.411	3.431	2.160	5.533	4.038	4.186	4.200	3.208	3.895	3.540	4.829	6.040	5.595	4.437	5.340	2.708	2.451	2.046	3.621	3.754	2.888	4.641
7032	chr18	12386742	12389039	+	0	NA	intron (NM_010680, intron 2 of 74)	intron (NM_010680, intron 2 of 74)	53866	NM_010680	16774	Mm.42012	NM_010680	ENSMUSG00000024421	Lama3	Lama3B|[a]3B	laminin, alpha 3	protein-coding	3.399	2.549	0.982	3.663	1.843	0.699	0.919	4.447	3.033	2.716	1.843	0.668	nan	3.105	2.511	3.641	1.918	2.414	0.599	1.189	0.452	0.529	0.634	0.342	4.766
3664	chr12	103597997	103601317	+	0	NA	intron (NM_028980, intron 16 of 24)	L2a|LINE|L2	31787	NM_001301404	217847	Mm.29094	NM_144834	ENSMUSG00000061947	Serpina10	PZI|ZPI	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10	protein-coding	7.521	0.914	0.341	6.545	3.478	2.690	0.514	nan	nan	7.760	1.561	0.935	3.289	6.296	2.979	3.232	4.617	4.784	1.790	1.241	0.618	2.893	0.665	0.441	7.507
10377	chr4	109077215	109081251	+	0	NA	intron (NM_001346502, intron 12 of 23)	intron (NM_001346502, intron 12 of 23)	38803	NM_173350	100273	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	4.118	0.769	0.546	3.461	2.082	0.917	3.033	5.476	3.392	4.959	3.367	2.985	3.314	4.018	4.599	5.644	2.722	5.768	7.869	4.087	4.064	8.265	5.471	4.217	7.398
6540	chr17	32007202	32011999	+	0	NA	intron (NM_028902, intron 5 of 7)	intron (NM_028902, intron 5 of 7)	24908	NM_028902	74377	Mm.75856	NM_028902	ENSMUSG00000002076	Hsf2bp	4932437G14Rik	heat shock transcription factor 2 binding protein	protein-coding	2.414	2.508	0.961	5.650	4.081	2.249	4.216	4.207	4.125	6.507	3.198	2.381	2.025	3.665	2.919	3.454	2.343	4.335	2.973	2.608	2.125	8.809	3.499	2.907	2.771
10433	chr4	118096623	118105874	+	0	NA	intron (NM_009176, intron 2 of 11)	B3|SINE|B2	33698	NM_001285520	20441	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	7.539	3.581	1.472	7.086	4.343	2.331	6.726	7.096	5.394	9.658	3.256	2.133	6.373	11.033	7.797	nan	5.907	7.110	2.609	2.257	1.779	2.611	2.828	1.917	10.341
3108	chr11	120204351	120207021	+	0	NA	Intergenic	Intergenic	-15830	NR_030682	100042332	Mm.269766	NR_030682		2810410L24Rik	-	RIKEN cDNA 2810410L24 gene	ncRNA	3.336	2.408	1.875	2.439	4.004	3.406	3.847	5.644	3.535	3.120	3.645	2.943	4.302	4.772	3.743	4.371	3.330	3.557	2.282	nan	2.341	2.344	2.434	2.445	2.977
9558	chr3	96065527	96068370	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	-8493	NM_013841	22365	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	11.665	15.277	5.206	9.667	8.333	3.353	9.036	10.708	6.289	9.099	9.766	3.756	10.828	14.247	9.887	11.270	9.961	10.491	8.077	5.889	3.297	8.997	6.304	4.537	14.159
4285	chr13	93379078	93383225	+	0	NA	intron (NM_001284189, intron 5 of 8)	intron (NM_001284189, intron 5 of 8)	73117	NM_152134	26556	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	8.738	7.565	1.778	8.117	3.033	1.727	6.081	7.232	5.306	7.530	5.352	3.034	8.606	8.915	9.369	9.597	nan	9.981	2.500	1.421	1.274	3.414	1.446	1.557	12.621
10821	chr4	141113280	141132027	+	0	NA	intron (NM_001025608, intron 1 of 3)	intron (NM_001025608, intron 1 of 3)	17143	NR_102344	213491	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	nan	2.116	1.046	5.070	8.038	6.355	5.272	6.427	nan	4.998	4.491	3.375	4.862	7.642	4.812	5.819	3.504	nan	1.764	1.412	1.861	1.907	nan	1.924	6.423
11753	chr5	130504777	130506274	+	0	NA	intron (NM_021371, intron 1 of 5)	A-rich|Low_complexity|Low_complexity	56733	NM_021371	140904	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	7.254	9.990	5.631	7.432	4.276	3.451	6.296	6.184	5.026	7.229	5.172	3.234	5.289	6.262	7.812	7.900	4.790	7.763	4.713	2.600	4.878	4.991	3.837	4.988	9.159
5066	chr15	25069894	25071694	+	0	NA	Intergenic	Intergenic	342970	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	5.099	0.767	0.578	0.879	0.889	0.715	7.844	4.880	3.214	2.906	0.855	0.753	8.683	4.570	5.226	2.078	7.275	3.172	0.875	0.922	0.456	0.454	0.678	0.752	2.541
2753	chr11	98763808	98769574	+	0	NA	intron (NM_001313983, intron 9 of 9)	intron (NM_001313983, intron 9 of 9)	8686	NM_145434	217166	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	6.371	nan	1.327	3.815	6.631	5.069	8.314	7.522	4.951	4.889	4.347	4.041	5.910	7.104	6.603	7.511	6.877	6.174	1.685	nan	1.539	1.632	nan	nan	5.614
1473	chr10	79370748	79372423	+	0	NA	intron (NM_001101572, intron 1 of 5)	L1Md_F2|LINE|L1	14994	NM_001101572	624845	Mm.469866	NM_001101572	ENSMUSG00000091468	Vmn2r82	EG624845	vomeronasal 2, receptor 82	protein-coding	8.893	10.863	5.534	7.997	9.719	7.856	6.367	8.140	5.811	10.267	6.678	3.310	7.227	10.510	nan	6.636	10.147	5.469	6.090	4.627	6.987	6.251	5.714	7.440	8.899
881	chr1	173295945	173297014	+	0	NA	Intergenic	Intergenic	-18723	NM_001205011	100504232	Mm.482546	NM_001205011	ENSMUSG00000079180	Mptx2	ENSMUSG00000079180|Gm11062	mucosal pentraxin 2	protein-coding	1.269	0.555	0.114	1.483	1.516	0.320	1.994	2.267	1.027	1.075	0.719	0.943	1.390	3.324	2.009	3.344	0.949	1.690	1.214	0.898	0.439	0.818	1.152	0.356	1.639
2461	chr11	75015269	75028632	+	0	NA	intron (NM_001002764, intron 10 of 18)	Lx5|LINE|L1	44041	NR_030454	735274		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	nan	0.909	0.495	1.607	0.863	0.410	nan	2.975	1.250	1.575	0.369	0.796	1.703	nan	nan	nan	1.853	nan	4.634	4.258	nan	6.386	4.766	3.707	2.301
14563	chr8	108994830	108996598	+	0	NA	Intergenic	Intergenic	58854	NR_037295	100526511		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0.463	0.551	1.307	0.414	0.699	0.537	0.632	0.666	0.551	0.509	0.395	0.797	0.133	0.425	0.347	0.792	0.950	0.498	1.437	3.170	4.648	nan	2.802	2.981	0.626
10636	chr4	132625745	132627541	+	0	NA	Intergenic	B2_Mm1t|SINE|B2	-12403	NM_210071	14050	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	1.458	0.998	0.645	2.714	4.105	1.551	3.553	2.620	2.537	2.478	6.575	2.912	2.680	4.958	3.549	1.740	0.536	2.833	2.868	1.855	0.964	3.663	0.838	0.601	2.949
6880	chr17	80183873	80186946	+	0	NA	TTS (NM_176963)	TTS (NM_176963)	21896	NM_001195486	225027	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	5.292	1.143	0.800	2.510	3.292	1.815	7.358	2.907	3.919	4.405	5.499	1.573	3.610	5.487	4.473	6.017	5.847	3.347	0.901	1.147	0.376	0.789	0.806	0.513	3.590
3186	chr12	14157519	14159633	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-6538	NM_029007	105005	Mm.227253	NM_029007	ENSMUSG00000020607	Fam84a	2310003N02Rik|4731402F03Rik|AW125753|Nse1	family with sequence similarity 84, member A	protein-coding	3.476	0.643	0.187	1.516	1.198	0.366	3.370	3.179	1.196	1.030	4.958	4.860	2.239	4.192	5.038	1.644	3.995	1.607	3.696	1.787	1.378	3.062	3.519	2.837	3.351
405	chr1	89543678	89550778	+	0	NA	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	92417	NM_001037136	347722	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	4.023	9.674	5.844	4.348	2.634	1.526	1.006	1.123	2.481	2.512	1.560	0.847	0.880	2.333	1.559	2.262	1.528	2.657	0.687	1.417	1.150	nan	0.552	0.468	1.894
7033	chr18	12391569	12396041	+	0	NA	intron (NM_010680, intron 2 of 74)	intron (NM_010680, intron 2 of 74)	59781	NM_010680	16774	Mm.42012	NM_010680	ENSMUSG00000024421	Lama3	Lama3B|[a]3B	laminin, alpha 3	protein-coding	nan	4.308	1.627	6.389	2.723	1.375	3.316	7.097	3.335	6.966	3.408	1.530	6.637	6.806	5.555	8.373	5.017	4.759	2.041	1.258	0.777	1.880	1.658	1.729	11.821
6092	chr16	45392366	45396483	+	0	NA	intron (NM_010818, intron 4 of 5)	intron (NM_010818, intron 4 of 5)	14629	NM_010818	17470	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	6.640	1.795	1.278	2.906	3.696	1.707	2.626	3.669	3.616	4.615	1.035	0.969	5.331	4.588	3.714	4.912	3.994	5.970	0.803	1.474	0.566	0.483	0.991	0.510	4.281
8172	chr2	34746067	34749863	+	0	NA	intron (NM_025709, intron 2 of 26)	intron (NM_025709, intron 2 of 26)	7267	NM_025709	66691	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	2.880	0.911	0.659	2.055	1.816	1.132	3.311	2.089	2.376	nan	0.334	0.481	4.440	4.176	2.388	4.592	5.461	3.823	0.667	0.789	0.630	0.538	0.607	0.590	5.264
8045	chr2	26809864	26813613	+	0	NA	Intergenic	Lx7|LINE|L1	53257	NM_030718	80908	Mm.160386	NM_030718	ENSMUSG00000015787	Abo	NAGAT	ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase, transferase B, alpha 1-3-galactosyltransferase)	protein-coding	4.508	0.840	0.459	2.036	1.337	1.433	3.500	10.043	nan	1.997	0.632	0.700	6.249	5.312	4.837	5.458	3.490	2.924	0.756	0.752	0.748	1.966	0.444	0.244	5.574
1734	chr10	111270863	111277176	+	0	NA	intron (NM_175489, intron 12 of 23)	intron (NM_175489, intron 12 of 23)	-24660	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	nan	0.534	0.720	1.950	1.781	1.054	3.298	3.513	nan	3.178	8.474	7.130	3.761	3.734	3.298	3.494	2.518	3.391	1.155	1.318	0.739	1.152	0.925	0.546	2.811
14133	chr8	35023863	35029941	+	0	NA	Intergenic	Intergenic	-61212	NM_175091	21951	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	4.129	1.000	0.881	4.380	4.468	3.309	3.232	6.839	3.800	3.323	3.319	2.583	4.316	5.365	4.854	5.467	4.576	5.327	2.845	1.363	1.236	2.056	2.394	2.163	4.682
11666	chr5	122497917	122500412	+	0	NA	intron (NM_001110140, intron 3 of 19)	intron (NM_001110140, intron 3 of 19)	3061	NM_001110140	11938	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	1.179	1.163	0.626	1.955	0.908	0.783	0.166	0.975	0.797	2.797	0.116	0.398	0.611	0.856	1.022	1.644	1.805	0.890	4.886	nan	3.753	4.882	6.314	7.482	1.211
9835	chr3	137641866	137644469	+	0	NA	Intergenic	Intergenic	19495	NM_030143	73284	Mm.250841	NM_030143	ENSMUSG00000046818	Ddit4l	1700037B15Rik|1700108M02Rik|REDD2|RTP801L|Smhs1	DNA-damage-inducible transcript 4-like	protein-coding	7.896	7.973	2.726	4.051	3.135	1.384	8.331	7.547	5.193	5.035	5.004	3.786	9.190	8.623	8.470	8.022	7.735	7.079	4.283	2.884	2.079	4.656	3.195	2.349	7.890
9396	chr3	84159750	84161649	+	0	NA	3' UTR (NM_030706, exon 12 of 12)	3' UTR (NM_030706, exon 12 of 12)	-4913	NM_029797	76915	Mm.274829	NM_029797	ENSMUSG00000033752	Mnd1	2610034E18Rik|AI591601|Gaj	meiotic nuclear divisions 1	protein-coding	2.761	1.667	1.408	1.990	2.454	1.858	3.446	2.968	3.166	2.415	1.594	1.010	3.741	4.928	2.939	3.748	4.134	2.499	nan	1.399	1.638	1.034	1.895	1.313	2.395
9354	chr3	62242871	62244575	+	0	NA	Intergenic	Intergenic	-95054	NM_001081295	622434	Mm.153974	NM_001081295	ENSMUSG00000036885	Arhgef26	4631416L12Rik|8430436L14Rik|AI303572|AW491953|SGEF	Rho guanine nucleotide exchange factor (GEF) 26	protein-coding	3.442	0.416	0.472	3.194	2.212	1.169	4.670	1.862	2.773	2.462	1.371	0.533	5.546	5.163	3.104	3.644	5.003	5.712	0.983	0.753	0.967	0.677	0.770	0.499	3.174
3230	chr12	25369409	25372951	+	0	NA	Intergenic	Intergenic	242006	NR_045844	432641	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	2.530	0.724	0.445	1.044	0.185	0.243	2.468	3.255	2.136	1.883	0.141	0.412	5.481	4.365	4.452	5.325	3.815	3.223	0.796	0.147	0.388	0.981	0.402	0.268	2.076
7042	chr18	14940889	14942460	+	0	NA	Intergenic	RMER17B2|LTR|ERVK	-47321	NR_045372	74456	Mm.391075	NR_045372		4933424G05Rik	-	RIKEN cDNA 4933424G05 gene	ncRNA	6.433	8.681	3.717	7.177	2.741	1.938	4.041	6.854	3.423	7.378	5.601	2.834	5.155	5.912	5.046	5.850	3.879	6.996	0.772	0.866	0.974	1.753	1.077	0.779	10.114
13708	chr7	128216590	128219954	+	0	NA	Intergenic	MT2A|LTR|ERVL	-11906	NM_009943	12862	Mm.43824	NM_009943	ENSMUSG00000030785	Cox6a2	CoxVIaH|VIaH	cytochrome c oxidase subunit VIa polypeptide 2	protein-coding	7.141	2.359	1.204	4.106	4.006	2.591	5.272	10.041	3.397	5.007	6.466	3.003	5.834	5.534	6.783	5.127	3.906	6.250	2.234	0.750	0.781	1.697	0.711	0.668	4.717
12429	chr6	89395749	89398052	+	0	NA	intron (NM_025351, intron 6 of 7)	intron (NM_025351, intron 6 of 7)	-34287	NM_008881	18844	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	5.230	1.277	0.731	4.167	3.526	1.061	9.039	5.643	3.740	3.813	2.209	1.243	7.763	6.588	7.414	9.105	5.317	8.090	2.509	1.232	0.870	1.704	1.685	1.221	5.062
13554	chr7	116077905	116080587	+	0	NA	Intergenic	Intergenic	13903	NR_029433	69350	Mm.440425	NR_029433	ENSMUSG00000087621	1700003G18Rik	2610312K03Rik	RIKEN cDNA 1700003G18 gene	ncRNA	5.453	5.731	1.980	4.897	4.573	2.534	4.556	6.430	3.496	6.642	3.149	3.273	5.678	6.880	5.480	4.485	4.212	5.863	2.332	1.861	1.583	2.154	2.404	2.158	8.423
392	chr1	88375280	88380959	+	0	NA	intron (NM_134252, intron 23 of 26)	B3A|SINE|B2	-28891	NM_029269	75396	Mm.173058	NM_029269	ENSMUSG00000026295	Spp2	0610038O04Rik|pp-24|spp24	secreted phosphoprotein 2	protein-coding	7.898	7.008	6.309	3.123	3.372	2.839	5.629	5.912	2.613	2.330	2.673	1.738	5.597	5.699	4.993	8.032	9.696	3.676	1.165	1.342	1.919	nan	1.151	1.702	5.417
13155	chr7	51808280	51810895	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-52428	NM_001330608	14453	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	5.992	9.329	6.216	6.363	6.206	2.313	6.754	8.936	3.877	5.621	4.230	2.865	7.133	7.611	6.383	7.150	7.631	5.780	2.641	2.920	1.875	2.347	2.651	1.654	6.969
9387	chr3	79718970	79722430	+	0	NA	intron (NM_212452, intron 1 of 17)	intron (NM_212452, intron 1 of 17)	17094	NM_212452	381489	Mm.331086	NM_212452	ENSMUSG00000034009	Rxfp1	Gm1018|Lgr7	relaxin/insulin-like family peptide receptor 1	protein-coding	1.419	0.578	0.227	1.207	0.529	0.144	0.854	0.398	0.817	0.632	7.517	2.230	0.561	0.761	0.912	1.176	0.803	1.839	0.425	0.356	0.248	0.746	0.105	0.138	0.887
7484	chr19	4718489	4722177	+	0	NA	intron (NM_021287, intron 2 of 36)	intron (NM_021287, intron 2 of 36)	9110	NM_021287	20743	Mm.329668	NM_021287	ENSMUSG00000067889	Sptbn2	Spnb3|mKIAA0302	spectrin beta, non-erythrocytic 2	protein-coding	4.260	0.702	0.322	3.271	2.012	1.102	4.655	8.920	nan	3.190	5.368	2.171	3.758	5.342	4.281	3.853	5.788	4.082	3.709	3.718	2.008	6.583	5.884	4.478	5.130
2242	chr11	57880369	57881739	+	0	NA	Intergenic	Intergenic	-48907	NM_008213	15110	Mm.4746	NM_008213	ENSMUSG00000037335	Hand1	Ehand1|Hxt|Th1|Thing1|bHLHa27|eHAND	heart and neural crest derivatives expressed transcript 1	protein-coding	1.917	1.044	0.801	1.966	1.413	0.695	3.371	3.231	1.801	1.603	3.339	1.644	2.694	3.275	2.940	3.546	1.709	2.767	nan	1.583	0.537	1.657	1.233	0.661	nan
15310	chr9	75269350	75272132	+	0	NA	intron (NM_001081322, intron 16 of 40)	B1_Mus1|SINE|Alu	-35547	NM_010313	14697	Mm.17604	NM_010313	ENSMUSG00000032192	Gnb5	GBS|Gbeta5|flr	guanine nucleotide binding protein (G protein), beta 5	protein-coding	5.087	1.092	0.681	4.008	6.644	5.593	5.417	5.257	5.466	4.674	6.866	3.992	4.065	7.310	4.847	3.581	1.972	6.317	0.838	nan	0.899	1.042	1.244	1.165	5.934
5530	chr15	85475340	85479381	+	0	NA	Intergenic	L1M5|LINE|L1	25867	NM_001256072	328577	Mm.212960	NM_001256072	ENSMUSG00000096607	7530416G11Rik	-	RIKEN cDNA 7530416G11 gene	protein-coding	9.018	5.816	1.790	8.058	5.435	2.913	10.609	12.343	nan	7.785	7.782	4.141	8.367	10.081	nan	nan	7.224	9.754	nan	2.348	1.941	4.581	3.127	2.806	nan
2254	chr11	59445850	59453907	+	0	NA	promoter-TSS (NM_178659)	promoter-TSS (NM_178659)	78	NM_144521	67826	Mm.26680	NM_144521	ENSMUSG00000009894	Snap47	1110031B06Rik|SNAP-47	synaptosomal-associated protein, 47	protein-coding	3.857	1.377	0.894	3.070	3.691	1.709	4.140	5.342	3.988	3.871	6.490	3.395	5.294	6.247	4.016	4.110	2.885	5.286	nan	1.686	1.090	2.699	1.080	0.690	4.125
15277	chr9	71522031	71528581	+	0	NA	intron (NM_001033208, intron 10 of 12)	intron (NM_001033208, intron 10 of 12)	-39323	NM_178602	28015	Mm.21094	NM_178602	ENSMUSG00000032199	Polr2m	AA407243|AA408799|AI303746|AW553238|D9Wsu138e|Grinl1a|mKIAA4185	polymerase (RNA) II (DNA directed) polypeptide M	protein-coding	4.357	0.814	0.484	2.667	2.978	2.462	3.812	6.104	3.158	3.172	3.513	1.782	3.174	5.247	4.764	4.606	2.736	4.021	nan	0.887	0.721	1.218	1.288	1.135	6.695
13546	chr7	112853304	112856586	+	0	NA	intron (NM_001166585, intron 3 of 10)	(TG)n|Simple_repeat|Simple_repeat	95561	NM_001166585	21676	Mm.24685	NM_009346	ENSMUSG00000055320	Tead1	2610024B07Rik|B230114H05Rik|Gtrgeo5|TEAD-1|TEF-1|Tcf13|mTEF-1	TEA domain family member 1	protein-coding	1.740	0.563	0.468	1.815	0.852	0.543	1.773	1.012	1.424	2.076	0.459	0.211	3.848	4.527	2.445	2.949	2.551	2.776	nan	1.252	0.549	0.589	0.718	0.449	1.932
10375	chr4	108815062	108823669	+	0	NA	intron (NM_027453, intron 3 of 5)	intron (NM_027453, intron 3 of 5)	14219	NM_027453	70533	Mm.379178	NM_027453	ENSMUSG00000028568	Btf3l4	4632412E09Rik|5730434I03Rik|AI316863|AU022207|AW552446	basic transcription factor 3-like 4	protein-coding	5.645	1.225	0.848	3.787	5.674	4.328	4.298	3.100	4.020	3.517	2.298	1.613	4.022	5.571	3.894	4.080	3.232	5.609	1.160	1.757	1.532	1.192	0.900	0.673	3.663
9693	chr3	108113787	108116193	+	0	NA	intron (NM_010306, intron 5 of 8)	intron (NM_010306, intron 5 of 8)	21924	NM_008141	14686	Mm.439652	NM_008141	ENSMUSG00000009108	Gnat2	AW490837|Gnat-2|Gt-2|Tcalpha	guanine nucleotide binding protein, alpha transducing 2	protein-coding	2.804	0.729	0.331	3.789	3.284	2.667	2.996	1.163	3.175	3.408	0.922	1.273	4.562	4.168	2.274	3.385	4.336	3.035	2.057	1.419	1.778	1.725	3.419	4.136	3.357
15343	chr9	78458111	78459458	+	0	NA	intron (NM_026658, intron 7 of 11)	intron (NM_026658, intron 7 of 11)	10574	NM_026658	68291	Mm.291779	NM_026658	ENSMUSG00000032342	Mto1	2310039H01Rik|5730419A02Rik	mitochondrial tRNA translation optimization 1	protein-coding	0.458	0.594	0.538	0.469	0.564	0.427	0.676	0.348	0.391	0.117	0.491	0.696	0.041	0.266	0.216	0.397	0.264	0.301	1.084	nan	1.208	0.308	5.086	4.876	nan
813	chr1	164125777	164128466	+	0	NA	intron (NM_011347, intron 3 of 15)	intron (NM_011347, intron 3 of 15)	11857	NM_011347	20344	Mm.3337	NM_011347	ENSMUSG00000026580	Selp	CD62P|GMP-140|Grmp|LECAM3|PADGEM	selectin, platelet	protein-coding	0.610	1.094	0.464	nan	0.250	0.093	0.517	0.412	nan	0.737	6.441	1.126	nan	0.492	nan	1.005	0.668	0.599	0.653	0.449	0.185	nan	nan	0.616	nan
9770	chr3	122120875	122125237	+	0	NA	intron (NM_007378, intron 19 of 49)	intron (NM_007378, intron 19 of 49)	78596	NM_007378	11304	Mm.3918	NM_007378	ENSMUSG00000028125	Abca4	AW050280|Abc10|Abcr|D430003I15Rik|RmP	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding	6.597	12.123	5.755	7.046	5.418	3.248	5.719	6.178	6.758	8.698	8.073	5.550	4.876	8.362	5.388	6.118	4.354	7.756	3.308	2.404	2.181	2.104	nan	4.098	nan
644	chr1	135389081	135390958	+	0	NA	intron (NM_153774, intron 17 of 23)	intron (NM_153774, intron 17 of 23)	-14956	NM_175259	77552	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	3.411	1.619	0.641	5.553	0.756	0.250	4.242	2.471	3.005	3.341	4.155	1.806	1.367	2.782	3.910	5.117	2.647	4.327	4.269	2.108	1.691	5.992	3.207	2.798	7.109
6810	chr17	67601721	67604202	+	0	NA	Intergenic	Intergenic	29762	NM_001033340	240131	Mm.295736	NM_001033340	ENSMUSG00000073375	Lrrc30	Gm326	leucine rich repeat containing 30	protein-coding	5.077	0.507	0.159	2.347	2.701	0.897	6.010	3.003	nan	3.526	0.506	0.500	5.814	5.743	4.135	5.419	4.963	5.505	1.060	0.916	0.346	1.182	1.134	0.591	4.609
2477	chr11	75959901	75961230	+	0	NA	Intergenic	Intergenic	-34674	NM_001291159	380714	Mm.425697	NM_029548	ENSMUSG00000020847	Rph3al	Gm1753|Noc2	rabphilin 3A-like (without C2 domains)	protein-coding	4.788	0.770	0.759	3.465	3.842	3.221	2.959	2.211	3.591	2.878	2.879	1.706	1.664	4.130	nan	nan	3.341	3.051	0.896	1.412	nan	0.385	0.717	1.177	3.351
13498	chr7	107577886	107580743	+	0	NA	intron (NM_172907, intron 2 of 2)	intron (NM_172907, intron 2 of 2)	962	NR_035497	100316820		NR_035497	ENSMUSG00000088464	Mir1970	mmu-mir-1970	microRNA 1970	ncRNA	6.545	1.830	1.203	5.943	3.521	2.301	3.906	6.647	5.541	5.484	6.901	4.961	5.054	6.353	6.536	6.801	5.606	5.471	nan	1.194	1.058	1.417	1.133	0.884	5.440
3360	chr12	57879510	57883744	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-218716	NR_131112	217601	Mm.488987	NR_131112		BC042761	-	cDNA sequence BC042761	ncRNA	0.844	nan	0.226	0.299	0.350	0.176	0.593	1.710	2.036	1.517	6.852	4.014	1.381	1.141	nan	nan	0.531	nan	0.510	1.182	0.535	1.551	0.219	0.366	0.440
1820	chr10	122290875	122292292	+	0	NA	Intergenic	Intergenic	-156916	NM_016847	54140	Mm.4351	NM_016847	ENSMUSG00000020123	Avpr1a	AVPR|Avpr1|V1a|V1aR	arginine vasopressin receptor 1A	protein-coding	2.723	1.480	0.182	1.304	3.054	1.391	4.652	2.137	1.815	2.518	2.516	1.004	2.428	4.232	2.302	1.922	1.787	2.875	1.130	1.205	0.636	1.538	0.831	0.590	2.139
14665	chr8	122078085	122083999	+	0	NA	Intergenic	Intergenic	103018	NR_106096	102466915		NR_106096	ENSMUSG00000099140	Mir7237	Gm27482|mmu-mir-7237	microRNA 7237	ncRNA	3.559	3.493	1.213	3.458	1.950	1.021	2.449	3.051	2.569	3.820	3.499	1.957	3.181	3.431	3.858	4.847	2.815	3.670	2.628	2.424	1.832	6.346	1.103	1.189	4.897
5308	chr15	73443843	73445307	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-21384	NM_001130409	14083	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FAK|FRNK|Fadk|mKIAA4203|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	3.344	3.590	1.480	2.519	1.719	0.598	5.778	4.797	2.839	3.144	3.275	1.823	5.822	5.137	5.147	4.315	3.131	4.187	1.444	1.381	1.040	nan	1.141	0.599	4.068
5275	chr15	66932323	66936421	+	0	NA	intron (NM_008681, intron 14 of 15)	intron (NM_008681, intron 14 of 15)	35269	NM_008681	17988	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	5.301	1.600	0.885	4.625	4.118	1.960	5.394	11.132	4.108	5.188	2.058	1.499	7.633	7.522	6.350	5.989	4.376	5.088	1.836	1.486	1.205	2.084	1.724	1.150	5.750
10392	chr4	115317025	115323195	+	0	NA	intron (NM_177406, intron 4 of 11)	L1Md_F2|LINE|L1	21064	NM_177406	277753	Mm.276106	NM_177406	ENSMUSG00000066071	Cyp4a12a	BC025936|Cyp4a12	cytochrome P450, family 4, subfamily a, polypeptide 12a	protein-coding	3.262	0.575	0.420	4.176	2.177	0.891	1.713	3.153	1.635	1.892	1.570	0.655	2.566	3.009	2.660	nan	1.136	3.692	0.534	0.822	0.511	1.237	0.526	0.423	2.462
15205	chr9	65193411	65195425	+	0	NA	Intergenic	PB1D10|SINE|Alu	-20272	NM_177460	214424	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	6.834	11.752	3.361	7.726	3.983	3.010	5.533	6.139	3.356	13.117	6.698	2.899	6.620	7.696	6.972	6.883	3.561	8.275	3.969	2.601	3.620	5.330	3.171	3.638	13.376
4185	chr13	59329265	59332347	+	0	NA	Intergenic	Intergenic	213645	NM_001284221	67269	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	nan	0.537	0.257	2.639	1.370	1.035	2.364	2.886	1.948	1.654	2.450	1.294	3.357	nan	1.457	nan	1.277	3.448	2.157	1.045	0.882	3.403	0.902	1.022	5.389
1802	chr10	120801540	120805774	+	0	NA	intron (NM_177092, intron 5 of 6)	intron (NM_177092, intron 5 of 6)	37925	NR_038003	70874	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	6.715	10.054	4.312	7.256	3.402	1.832	3.751	5.705	4.865	6.896	2.715	3.008	4.560	5.699	5.689	7.008	3.815	6.328	3.877	1.786	1.775	3.085	3.687	3.291	7.662
11358	chr5	74931083	74932726	+	0	NA	Intergenic	Intergenic	-17290	NR_045866	619945	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	8.476	11.500	4.682	10.014	6.090	3.530	9.657	7.122	5.453	9.262	6.983	4.995	6.654	9.167	8.145	8.563	7.866	8.508	7.362	5.752	2.770	6.452	6.858	5.169	10.253
2775	chr11	100385191	100390237	+	0	NA	intron (NM_010593, intron 1 of 13)	intron (NM_010593, intron 1 of 13)	10076	NM_010593	16480	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	7.254	nan	1.445	6.881	4.380	1.882	9.122	8.428	5.116	7.021	3.554	2.404	7.597	11.231	9.542	11.153	nan	8.093	2.526	nan	1.833	2.840	nan	nan	10.531
7494	chr19	5712978	5715160	+	0	NA	intron (NM_001114595, intron 11 of 17)	intron (NM_001114595, intron 11 of 17)	9598	NM_010609	16530	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	3.561	2.363	1.328	3.365	2.760	1.386	3.095	4.738	nan	2.856	1.512	1.515	2.481	4.683	3.394	4.016	3.185	3.563	0.997	1.079	1.140	0.971	0.788	1.049	5.414
9222	chr3	32408000	32410899	+	0	NA	Intergenic	Intergenic	-26702	NM_008839	18706	Mm.260521	NM_008839	ENSMUSG00000027665	Pik3ca	6330412C24Rik|caPI3K|p110|p110alpha	phosphatidylinositol 3-kinase, catalytic, alpha polypeptide	protein-coding	6.213	6.716	3.092	7.795	5.848	4.253	6.628	5.526	nan	7.495	3.535	2.946	6.540	7.615	6.674	7.305	5.597	6.810	3.715	2.599	3.274	4.680	3.129	4.414	9.995
15049	chr9	47559880	47566037	+	0	NA	intron (NM_001025600, intron 1 of 8)	intron (NM_001025600, intron 1 of 8)	32606	NM_018770	54725	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0.564	1.080	0.785	0.473	0.368	0.141	0.231	0.258	0.438	0.451	0.502	0.256	0.089	0.243	nan	nan	0.329	0.942	7.713	3.994	1.734	5.285	6.872	4.308	nan
14130	chr8	34976851	34982517	+	0	NA	Intergenic	Intergenic	-13994	NM_175091	21951	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	5.041	0.754	0.455	3.161	3.297	2.118	4.385	5.967	3.099	4.107	2.298	1.699	5.494	6.726	6.001	5.952	3.853	5.874	1.577	0.793	0.436	0.701	2.754	1.962	4.377
2273	chr11	60112743	60117062	+	0	NA	intron (NM_009021, intron 1 of 5)	intron (NM_009021, intron 1 of 5)	9889	NM_009021	19377	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	2.699	1.729	0.603	2.493	1.369	0.971	3.047	4.120	2.577	2.578	5.228	3.973	2.691	3.544	3.609	3.673	2.439	3.143	2.125	1.158	0.737	1.572	1.344	1.384	nan
8343	chr2	71649168	71653836	+	0	NA	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-67915	NR_037979	381371	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	4.737	10.084	4.621	3.042	1.516	0.542	2.857	6.128	2.607	2.437	3.567	2.844	4.799	3.247	4.153	4.165	3.463	4.144	4.020	4.235	2.565	4.039	3.804	2.650	5.893
9207	chr3	29945790	29948539	+	0	NA	Intergenic	Intergenic	56147	NR_110437	102636083		NR_110437	ENSMUSG00000102590	Mannr	Manr	Mecom adjacent non-protein coding RNA	ncRNA	1.631	0.413	0.224	nan	1.551	1.229	nan	0.847	nan	1.933	6.712	3.534	2.544	2.015	nan	2.049	1.994	2.271	0.669	0.604	0.268	0.532	0.362	0.450	1.378
791	chr1	162141510	162144288	+	0	NA	intron (NM_001038619, intron 14 of 20)	intron (NM_001038619, intron 14 of 20)	-74724	NR_002870	474332	Mm.479755	NR_002870	ENSMUSG00000078190	Dnm3os	6030416H16Rik|Hag2|Npn1|P/L01	dynamin 3, opposite strand	ncRNA	8.464	10.541	3.926	8.390	2.975	1.192	5.716	5.672	nan	9.571	5.882	3.127	7.935	8.000	8.382	13.314	8.641	8.089	nan	2.328	1.212	6.622	nan	2.314	10.611
3330	chr12	55295537	55306050	+	0	NA	intron (NM_021529, intron 2 of 13)	intron (NM_021529, intron 2 of 13)	-1844	NM_025373	66132	Mm.383213	NM_025373	ENSMUSG00000021023	1110008L16Rik	Kiaa0391|Mrpp3|mKIAA0391	RIKEN cDNA 1110008L16 gene	protein-coding	4.103	nan	0.583	0.862	1.179	0.578	2.384	6.614	1.037	1.478	3.108	4.451	2.286	2.002	nan	nan	1.919	nan	5.358	1.393	0.943	2.997	2.415	1.595	5.274
13003	chr7	25668674	25677339	+	0	NA	intron (NM_001290498, intron 2 of 3)	intron (NM_001290498, intron 2 of 3)	2160	NM_001290497	320208	Mm.207484	NM_177102	ENSMUSG00000061702	Tmem91	A830041P22Rik|DSPC3	transmembrane protein 91	protein-coding	6.769	8.117	3.172	6.397	5.771	3.827	6.799	9.123	4.868	7.207	3.628	2.147	7.954	9.473	7.890	7.942	7.132	8.821	2.269	1.954	2.168	2.489	1.847	1.612	9.598
14772	chr8	127044364	127047842	+	0	NA	Intergenic	Intergenic	-17953	NM_033620	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	2.250	nan	0.825	nan	1.493	0.424	nan	nan	1.050	1.752	1.034	1.395	1.325	1.752	nan	2.393	1.508	nan	nan	2.553	1.237	5.669	1.956	nan	nan
2231	chr11	55213092	55214096	+	0	NA	intron (NM_153139, intron 1 of 10)	L2b|LINE|L2	9254	NM_153139	215335	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	3.146	0.934	0.393	2.073	2.385	1.576	3.640	3.247	2.468	2.851	0.991	0.920	3.109	4.144	4.020	4.569	1.295	3.895	nan	0.265	0.366	0.560	0.166	0.094	3.318
5904	chr16	22508445	22513492	+	0	NA	promoter-TSS (NR_130988)	promoter-TSS (NR_130988)	-512	NR_130988	78082	Mm.243927	NR_130988	ENSMUSG00000089874	9230117E06Rik	-	RIKEN cDNA 9230117E06 gene	ncRNA	6.150	0.835	0.605	3.380	3.522	2.238	4.588	4.414	4.183	4.768	1.718	0.979	6.379	6.989	4.946	7.016	5.965	6.427	1.088	1.655	1.415	3.548	0.860	0.729	7.109
3231	chr12	25419331	25420848	+	0	NA	Intergenic	MTC-int|LTR|ERVL-MaLR	290915	NR_045844	432641	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	3.289	0.598	0.666	1.073	1.149	0.501	3.468	4.126	3.164	2.424	1.951	1.986	3.846	4.438	3.796	6.428	2.984	2.999	5.770	3.352	3.008	4.544	5.052	4.342	3.635
916	chr1	179563771	179564993	+	0	NA	intron (NM_146105, intron 1 of 10)	intron (NM_146105, intron 1 of 10)	17853	NM_146105	226744	Mm.87662	NM_146105	ENSMUSG00000038949	Cnst	9630058J23Rik	consortin, connexin sorting protein	protein-coding	2.982	0.985	0.275	1.297	3.382	2.863	3.273	1.781	2.147	1.655	2.435	1.491	2.397	3.316	3.575	3.065	1.398	4.151	1.368	0.221	0.526	1.115	1.065	0.916	2.334
11517	chr5	104999867	105001109	+	0	NA	Intergenic	Intergenic	-17771	NM_030239	27405	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP-binding cassette, sub-family G (WHITE), member 3	protein-coding	4.866	7.335	3.001	4.477	1.305	0.431	nan	2.518	1.955	2.834	1.883	0.725	5.560	5.793	4.821	3.545	1.078	2.119	nan	2.089	1.381	1.363	2.207	1.038	5.480
12933	chr7	16893724	16901951	+	0	NA	Intergenic	B2_Mm1a|SINE|B2	6051	NM_010320	14709	Mm.103770	NM_010320	ENSMUSG00000063594	Gng8	G(y)8	guanine nucleotide binding protein (G protein), gamma 8	protein-coding	8.704	8.472	2.781	8.834	6.298	4.332	7.264	7.918	4.791	11.378	4.049	2.979	5.546	9.118	7.717	9.764	7.665	8.947	4.577	3.157	3.647	4.642	3.469	4.237	13.894
14361	chr8	79956240	79959078	+	0	NA	Intergenic	L1Md_F2|LINE|L1	100349	NM_020259	15245	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	3.399	nan	0.637	3.209	3.414	1.197	nan	3.701	nan	2.807	1.454	2.130	5.939	6.363	4.025	6.164	4.184	3.023	0.801	0.877	0.342	1.258	0.706	0.241	3.027
3646	chr12	102257889	102267875	+	0	NA	intron (NM_172152, intron 14 of 16)	intron (NM_172152, intron 14 of 16)	-20192	NM_177620	217835	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	5.322	7.743	2.033	3.907	1.576	0.778	5.217	5.006	3.652	5.022	2.019	2.028	6.794	6.671	6.880	10.768	7.292	5.314	2.217	1.158	1.066	3.187	1.310	1.092	14.370
12392	chr6	86713291	86724099	+	0	NA	intron (NM_011818, intron 4 of 13)	RMER1B|Other|Other	14683	NM_011818	23885	Mm.321452	NM_011818	ENSMUSG00000001157	Gmcl1	2810049L19Rik|Btbd13|DIP|Gcl|Gcl-1|glc-1|mglc-1	germ cell-less, spermatogenesis associated 1	protein-coding	4.329	1.228	0.697	nan	4.899	2.957	9.525	7.139	4.812	4.865	3.675	4.542	5.248	8.391	5.690	7.098	4.034	nan	nan	2.331	2.283	2.677	3.922	3.499	4.650
11576	chr5	113560314	113569025	+	0	NA	intron (NM_177292, intron 3 of 7)	intron (NM_177292, intron 3 of 7)	14249	NM_177292	320916	Mm.102783	NM_177292	ENSMUSG00000063430	Wscd2	4933413A10Rik|C530024P05Rik|Gm450	WSC domain containing 2	protein-coding	4.441	1.623	0.432	7.733	3.433	2.140	5.973	6.180	3.772	5.557	5.674	3.073	2.999	4.608	6.402	6.965	3.533	6.830	6.234	nan	3.358	7.629	nan	3.595	7.999
10013	chr4	43051569	43053732	+	0	NA	Intergenic	Intergenic	-6303	NM_021468	22249	Mm.128892	NM_021468	ENSMUSG00000028456	Unc13b	Munc13-1|Munc13-2|Unc13a|Unc13h1|Unc13h2	unc-13 homolog B (C. elegans)	protein-coding	7.157	5.167	2.820	6.049	6.088	2.536	4.765	6.667	3.257	5.440	7.181	3.003	3.031	8.189	4.896	5.718	3.751	6.017	2.249	2.737	1.638	nan	1.763	1.609	7.292
14735	chr8	125193566	125197264	+	0	NA	intron (NM_174854, intron 9 of 12)	intron (NM_174854, intron 9 of 12)	141220	NM_174854	244667	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	1.220	nan	0.500	2.767	0.537	0.380	nan	nan	1.046	0.558	0.293	0.272	0.474	0.510	nan	1.260	0.610	1.854	3.916	3.079	1.761	nan	3.063	nan	1.438
7996	chr2	20883278	20885936	+	0	NA	intron (NM_001128084, intron 6 of 24)	intron (NM_001128084, intron 6 of 24)	83114	NM_001081364	71435	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	3.285	0.864	0.989	3.600	3.410	1.846	2.195	4.624	2.813	3.542	1.931	3.669	2.482	2.630	2.099	3.386	4.080	3.869	7.130	6.385	3.423	5.772	9.997	7.241	2.235
4857	chr14	76242427	76247048	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	133846	NM_013745	27275	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	7.791	8.765	3.022	9.289	4.590	3.864	6.117	8.870	5.809	9.734	5.667	4.720	6.757	8.111	7.819	8.408	5.085	7.976	4.933	2.626	3.621	5.134	2.661	4.327	10.794
4828	chr14	73107680	73110652	+	0	NA	Intergenic	LTR40c|LTR|ERVL	-33344	NM_001170694	105670	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	6.003	9.871	3.319	7.877	3.874	3.542	3.897	9.216	4.060	10.066	6.245	4.896	3.435	5.683	5.615	6.290	3.306	6.003	7.445	2.993	4.332	5.881	5.028	5.875	10.286
8120	chr2	31995771	31998052	+	0	NA	intron (NM_172268, intron 13 of 35)	intron (NM_172268, intron 13 of 35)	22461	NM_172268	227720	Mm.289686	NM_172268	ENSMUSG00000001855	Nup214	BC039282|CAN|D2H9S46E	nucleoporin 214	protein-coding	7.708	2.851	1.940	4.257	4.980	3.303	2.673	5.555	3.228	3.970	4.380	2.258	4.320	6.038	3.499	4.960	4.129	3.714	2.531	1.725	1.374	2.108	2.062	1.796	5.897
9231	chr3	36364859	36372306	+	0	NA	Intergenic	Intergenic	106942	NR_105976	102466786		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	3.851	0.822	0.509	2.025	4.892	3.706	4.683	1.618	nan	2.251	0.931	1.266	2.607	3.995	2.834	1.699	1.196	2.188	nan	0.942	0.545	nan	0.850	0.845	3.085
8764	chr2	146697970	146710486	+	0	NA	Intergenic	Intergenic	-151661	NM_001033298	228730	Mm.292352	NM_001033298	ENSMUSG00000074749	Kiz	Gm114|Ncrna00153|Plk1s1	kizuna centrosomal protein	protein-coding	4.230	0.613	0.377	2.896	2.389	1.419	4.660	2.919	3.176	3.195	1.166	0.481	9.030	5.957	3.474	6.242	7.022	3.889	nan	0.713	0.401	0.496	0.527	0.472	4.050
4476	chr14	14792225	14794698	+	0	NA	intron (NM_001033270, intron 23 of 24)	(TTTC)n|Simple_repeat|Simple_repeat	-27354	NM_001195229	674895	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	4.619	9.540	3.529	5.360	4.540	3.457	4.456	8.090	nan	9.182	4.840	3.277	3.728	4.942	4.719	5.429	4.172	4.915	5.439	4.541	5.070	nan	8.189	8.258	8.671
2331	chr11	66616983	66620998	+	0	NA	Intergenic	Intergenic	-92864	NM_001034874	380702	Mm.351764	NM_001034874	ENSMUSG00000053930	Shisa6	Gm879|ckamp52	shisa family member 6	protein-coding	0.617	0.753	0.446	0.340	0.226		0.386	0.426	0.256	0.322	0.267	0.102	0.172	nan	0.195	0.519	0.376	0.416	4.742	2.792	1.340	5.143	nan	2.464	nan
1902	chr11	3933253	3937432	+	0	NA	Intergenic	Intergenic	-3264	NM_001130458	21452	Mm.20948	NM_015749	ENSMUSG00000020432	Tcn2	AW208754|Tcn-2	transcobalamin 2	protein-coding	nan	2.137	0.845	5.163	4.708	2.625	4.333	6.163	4.645	5.621	2.125	1.404	5.884	8.855	5.747	6.491	4.570	6.883	1.319	nan	1.007	2.601	1.428	1.170	5.696
1561	chr10	85887419	85889282	+	0	NA	3' UTR (NM_133993, exon 15 of 15)	3' UTR (NM_133993, exon 15 of 15)	16519	NM_133993	103136	Mm.18834	NM_133993	ENSMUSG00000001785	Pwp1	2310058A11Rik|2610205J09Rik|AI098170|AL022879|AV083409|AW550690	PWP1 homolog, endonuclein	protein-coding	3.610	0.789	0.413	1.370	0.957	0.312	2.928	1.245	2.115	2.069	0.488	0.467	1.579	2.068	2.493	3.985	2.932	3.651	3.177	1.746	1.165	nan	nan	0.508	6.907
7503	chr19	6275735	6279975	+	0	NA	intron (NM_010119, intron 1 of 4)	intron (NM_010119, intron 1 of 4)	959	NM_010119	13660	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	8.671	12.188	2.658	10.216	4.613	1.893	8.736	11.835	nan	7.339	7.539	2.947	5.953	11.610	9.345	10.867	8.157	10.214	1.675	2.113	1.298	3.456	2.208	1.868	13.933
10766	chr4	138010053	138012850	+	0	NA	intron (NM_172703, intron 2 of 34)	B1_Mus2|SINE|Alu	17995	NM_172703	230861	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	7.412	1.581	0.880	9.910	8.122	5.361	17.018	11.738	4.081	12.774	2.212	2.966	10.430	15.447	7.479	10.392	6.609	7.063	8.942	6.728	6.287	12.117	nan	11.714	10.126
6316	chr17	7038093	7041572	+	0	NA	intron (NM_001033442, intron 2 of 3)	intron (NM_001033442, intron 2 of 3)	14289	NM_001033442	381059	Mm.490353	NM_001033442	ENSMUSG00000095720	Gm1604b	ENSMUSG00000073470|Gm1604	predicted gene 1604b	protein-coding	5.133	0.789	0.432	3.699	5.741	3.556	6.691	4.484	3.773	3.846	3.392	2.487	5.286	7.373	6.944	7.850	5.470	5.677	nan	0.844	1.090	1.154	1.109	0.979	5.358
2001	chr11	20007189	20009130	+	0	NA	intron (NM_033523, intron 3 of 5)	intron (NM_033523, intron 3 of 5)	83717	NM_033523	114716	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	2.887	5.347	3.425	1.928	2.609	1.747	2.933	2.180	1.788	1.729	4.598	2.272	2.788	3.027	1.959	2.241	1.738	nan	0.995	1.202	0.892	0.674	1.008	0.619	1.994
4394	chr13	110099568	110101948	+	0	NA	intron (NM_023852, intron 3 of 4)	intron (NM_023852, intron 3 of 4)	179448	NM_023852	67295	Mm.151600	NM_023852	ENSMUSG00000021700	Rab3c	2700062I01Rik|3110015B08Rik|3110037E15Rik|AI850886	RAB3C, member RAS oncogene family	protein-coding	3.265	nan	0.604	3.900	1.456	0.651	1.586	2.417	4.096	4.588	1.921	0.811	5.334	4.823	2.442	4.168	2.750	4.236	0.914	0.635	0.154	nan	0.457	0.198	1.863
3731	chr12	112087846	112089690	+	0	NA	Intergenic	L1MA7|LINE|L1	-17915	NM_001081169	104816	Mm.77133	NM_001081169	ENSMUSG00000037686	Aspg	A530050D06Rik|AI429460|Gm690	asparaginase	protein-coding	8.784	9.956	2.206	8.546	2.173	1.754	7.018	7.095	4.499	10.649	3.326	2.272	6.290	6.892	9.955	9.875	5.789	8.265	2.302	1.642	1.074	5.260	1.129	1.796	15.095
3216	chr12	17769507	17772668	+	0	NA	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	80273	NM_016677	53602	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	8.412	1.444	0.621	5.853	4.948	3.412	3.266	4.179	4.737	5.041	1.674	1.480	3.685	4.495	3.126	3.718	2.519	6.411	1.105	1.048	0.819	1.027	1.090	0.881	4.199
15845	chrX	149931949	149935585	+	0	NA	intron (NM_001114400, intron 3 of 6).2	intron (NM_001114400, intron 3 of 6).2	-7888	NM_001122735	382244	Mm.359506	NM_001122735	ENSMUSG00000095082	Gm15091	OTTMUSG00000018981	predicted gene 15091	protein-coding	2.996	3.759	1.601	3.726	1.624	1.401	2.660	2.793	1.600	3.709	2.023	1.528	2.097	2.999	2.851	3.342	2.138	3.024	4.866	2.591	2.653	4.154	3.719	3.866	4.503
11008	chr5	4325581	4327219	+	0	NA	Intergenic	Intergenic	134033	NM_001042670	208595	Mm.129815	NM_001042670	ENSMUSG00000053178	Mterf1b	ENSMUSG00000053178|Gm9897	mitochondrial transcription termination factor 1b	protein-coding	4.684	0.763	0.512	1.635	3.675	2.691	6.706	3.573	2.851	2.898	4.111	1.913	4.886	4.067	4.883	3.832	4.566	3.180	0.784	0.898	0.745	0.530	1.125	0.517	2.897
10510	chr4	124807838	124809716	+	0	NA	intron (NM_008636, intron 2 of 10)	intron (NM_008636, intron 2 of 10)	6228	NM_008636	17764	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding	5.960	2.677	1.397	3.394	4.095	4.168	2.910	5.442	3.906	4.546	5.653	3.795	3.708	4.433	3.379	3.623	2.617	3.547	2.417	2.183	2.726	1.989	1.469	1.533	4.539
4357	chr13	103488365	103491271	+	0	NA	Intergenic	MTEa|LTR|ERVL-MaLR	-155326	NM_175171	328329	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	7.265	5.754	4.306	2.638	1.490	0.952	3.425	2.767	nan	2.938	1.771	1.056	2.082	4.681	2.809	3.201	2.115	nan	2.786	2.642	1.651	nan	2.398	1.663	5.957
10291	chr4	97490820	97492956	+	0	NA	Intergenic	Intergenic	-90055	NM_001122952	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	2.826	nan	0.622	2.806	2.593	0.456	1.740	2.629	2.656	2.990	1.127	1.798	1.570	3.747	nan	2.901	2.111	3.070	1.026	0.726	1.065	nan	0.292	0.415	1.958
5796	chr16	11012817	11015177	+	0	NA	non-coding (NR_040518, exon 3 of 3)	non-coding (NR_040518, exon 3 of 3)	5099	NR_040518	100043147	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	nan	7.302	4.063	2.526	1.791	0.804	nan	2.110	2.161	2.113	2.017	1.845	1.431	1.717	2.172	2.654	1.728	3.059	5.428	5.769	3.518	4.471	7.988	5.130	2.820
6670	chr17	46225889	46229667	+	0	NA	exon (NM_028198, exon 18 of 32)	exon (NM_028198, exon 18 of 32)	-3753	NR_030466	751553		NR_030466	ENSMUSG00000076141	Mir693	Mirn693|mir-693|mmu-mir-693	microRNA 693	ncRNA	1.584	0.675	0.686	0.835	0.740	0.765	3.550	4.023	1.433	1.075	0.806	0.452	1.233	nan	1.243	1.777	nan	1.057	0.853	1.129	1.341	0.929	0.647	0.547	1.162
4234	chr13	68711346	68712977	+	0	NA	intron (NM_153534, intron 13 of 24)	intron (NM_153534, intron 13 of 24)	114722	NM_027035	69315	Mm.272795	NM_027035	ENSMUSG00000021534	1700001L19Rik	-	RIKEN cDNA 1700001L19 gene	protein-coding	0.474	1.209	0.261	2.155	0.405	0.191	4.266	0.234	0.200	0.317	0.594	0.060	4.014	4.223	3.337	nan	0.225	4.173	0.427	0.107		0.418	0.054		2.746
3695	chr12	106751627	106753020	+	0	NA	Intergenic	Intergenic	-35999	NR_015512	71033	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA	4.046	1.250	0.429	3.197	1.526	1.655	2.249	nan	2.613	3.631	0.945	0.286	1.282	3.484	2.320	1.183	0.882	3.592	0.845	0.623	0.374	0.666	0.400	0.193	4.134
11029	chr5	17340233	17343363	+	0	NA	Intergenic	L1_Mur1|LINE|L1	-134324	NM_027609	70935	Mm.332225	NM_027609	ENSMUSG00000058643	Speer4f1	4922502J04Rik|SPEER-4F|Speer4f	spermatogenesis associated glutamate (E)-rich protein 4F1	protein-coding	3.447	1.016	0.505	3.496	3.636	1.297	2.256	2.833	3.599	3.759	0.817	0.686	3.540	4.169	3.784	3.944	3.857	4.219	0.695	0.982	0.527	0.483	0.512	0.119	2.117
1239	chr10	41301878	41309284	+	0	NA	Intergenic	Intergenic	-2340	NM_133999	103199	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	2.174	0.732	0.728	0.828	0.684	0.568	1.613	3.131	0.953	0.978	1.585	2.063	1.892	1.574	1.567	1.788	2.150	0.914	4.713	2.835	2.021	5.715	3.484	3.082	1.113
14829	chr8	129587134	129591083	+	0	NA	Intergenic	Intergenic	325478	NR_144501	102635552		NM_001346808		Gm32856	-	predicted gene, 32856	protein-coding	6.942	nan	0.464	8.083	2.696	2.040	6.629	8.694	4.966	11.295	8.065	3.687	8.793	7.898	9.342	10.692	7.446	8.008	nan	1.581	2.597	nan	2.414	nan	13.723
12461	chr6	91436716	91442067	+	0	NA	intron (NR_045980, intron 1 of 2)	ID4_|SINE|ID	1463	NR_045980	75787	Mm.30842	NR_045980	ENSMUSG00000097693	4930471M09Rik	4930427C17Rik	RIKEN cDNA 4930471M09 gene	ncRNA	6.321	1.165	0.362	nan	4.851	2.365	9.184	10.255	4.890	5.220	3.727	1.678	10.249	10.739	10.872	11.774	5.762	8.583	nan	0.668	0.504	1.959	1.054	1.032	7.647
14680	chr8	122624552	122629619	+	0	NA	3' UTR (NM_009824, exon 12 of 12)	3' UTR (NM_009824, exon 12 of 12)	-4350	NM_001007462	382035	Mm.25449	NM_001007462	ENSMUSG00000069867	Pabpn1l	Gm1108|Pabpnl1|ePABP2	poly(A)binding protein nuclear 1-like	protein-coding	6.982	4.454	1.302	8.057	3.122	2.164	3.127	6.328	4.115	6.834	3.286	1.947	4.257	5.875	5.567	6.584	3.197	6.691	2.086	1.500	1.682	3.875	1.646	1.481	8.126
7600	chr19	16036016	16038453	+	0	NA	Intergenic	Intergenic	52159	NR_045355	100502653	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	3.514	0.905	0.395	1.663	2.371	1.118	3.964	4.648	2.252	2.177	0.810	0.479	2.604	3.613	3.862	4.575	3.550	5.681	0.346	0.351	0.613	0.567	0.485	0.423	5.321
1809	chr10	120933202	120939378	+	0	NA	intron (NM_001081193, intron 4 of 12)	intron (NM_001081193, intron 4 of 12)	-37319	NM_177092	320183	Mm.169755	NM_177092	ENSMUSG00000051236	Msrb3	D430026P16Rik|I-8-23|MsrB2	methionine sulfoxide reductase B3	protein-coding	9.456	4.991	2.519	6.682	5.181	2.951	7.065	7.526	5.683	6.679	5.404	3.401	8.117	8.782	8.449	9.239	7.808	nan	2.542	2.076	1.684	4.235	1.678	1.316	8.504
2744	chr11	98353485	98357545	+	0	NA	intron (NM_144828, intron 5 of 6)	intron (NM_144828, intron 5 of 6)	2768	NR_045477	69338	Mm.398308	NR_045477	ENSMUSG00000085944	1700003D09Rik	-	RIKEN cDNA 1700003D09 gene	ncRNA	1.659	14.908	10.288	1.603	1.062	0.426	0.507	0.332	0.947	0.971	0.732	0.443	0.344	0.463	0.663	0.972	nan	0.854	0.690	nan	1.374	0.421	nan	nan	0.800
14344	chr8	75015201	75017630	+	0	NA	intron (NM_001316754, intron 1 of 6)	L1MC1|LINE|L1	193	NM_001316754	70823	Mm.261739	NM_178017	ENSMUSG00000034518	Hmgxb4	4733401K04Rik|AI316803|Hmgb2l1	HMG box domain containing 4	protein-coding	5.405	8.926	1.713	6.407	3.016	2.276	nan	7.720	nan	6.406	3.955	2.497	5.037	5.296	5.835	8.885	4.485	5.843	3.784	2.050	2.793	6.490	2.344	3.075	9.202
12364	chr6	83780445	83782660	+	0	NA	Intergenic	Intergenic	-5740	NM_009357	21766	Mm.28371	NM_009357	ENSMUSG00000014748	Tex261	3110001O07Rik|AA409339|AI480706|AL033351|TEG-261	testis expressed gene 261	protein-coding	5.265	5.022	1.835	nan	4.112	2.190	6.325	6.118	2.681	5.445	2.197	1.701	4.881	7.745	5.531	8.338	6.241	6.213	nan	2.149	2.198	3.375	3.057	3.563	6.206
9848	chr3	142427695	142429323	+	0	NA	Intergenic	Lx7|LINE|L1	-32813	NM_019808	56376	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	9.780	11.235	4.126	10.320	7.118	4.086	nan	7.623	6.572	8.954	7.442	5.029	8.456	9.324	8.140	9.273	7.726	10.185	5.672	4.216	4.458	6.987	5.326	4.299	12.598
6816	chr17	71075511	71081306	+	0	NA	intron (NM_010867, intron 16 of 37)	AT_rich|Low_complexity|Low_complexity	58851	NM_001083934	17929	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	2.701	0.895	0.606	1.710	3.744	3.309	4.642	4.324	nan	2.347	5.403	5.415	2.841	nan	3.484	3.937	3.288	3.306	1.081	0.761	0.852	0.659	0.910	0.861	2.717
13244	chr7	71130954	71136465	+	0	NA	Intergenic	Intergenic	-766963	NM_183261	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	nan	3.235	1.365	2.085	0.975	0.624	0.607	1.131	1.179	1.071	1.595	0.835	0.619	0.685	0.890	1.320	0.511	1.559	6.784	2.539	1.684	8.554	5.129	3.020	1.562
3199	chr12	16440376	16443187	+	0	NA	Intergenic	Intergenic	147989	NM_015763	14245	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	4631420P06|Kiaa0188|Lipin1|fld|mKIAA0188	lipin 1	protein-coding	0.322	1.497	1.381	0.399	0.237	0.175	0.440	0.186	0.117	0.201	0.330	0.177	0.038	0.255	0.281	0.614	0.464	0.340	3.767	3.237	1.831	4.770	2.296	2.169	0.542
5801	chr16	11251836	11254271	+	0	NA	intron (NM_146066, intron 1 of 14)	intron (NM_146066, intron 1 of 14)	1272	NM_001130008	14852	Mm.325827	NM_146066	ENSMUSG00000062203	Gspt1	AI314175|AI326449|AV307676|C79774|G1st|Gst-1	G1 to S phase transition 1	protein-coding	10.208	10.330	3.397	9.757	6.491	4.705	8.548	10.152	5.805	12.966	5.588	4.538	7.618	9.769	8.824	10.987	6.741	9.393	5.688	3.606	4.449	5.223	3.637	4.990	15.017
4669	chr14	54798096	54799430	+	0	NA	Intergenic	Intergenic	-16877	NM_016972	50934	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	1.741	2.582	1.100	0.937	3.561	1.867	2.540	1.267	1.569	2.607	1.228	0.503	1.183	3.545	1.900	0.861	1.099	1.075	0.713	1.845	0.521	0.759	0.503	0.325	0.893
14862	chr9	14078847	14081771	+	0	NA	Intergenic	Intergenic	-195992	NM_030261	75747	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	7.115	12.051	3.094	7.494	3.187	2.063	5.010	6.213	4.199	7.349	5.085	2.191	6.149	6.981	7.995	9.162	3.866	7.768	4.799	3.115	2.940	6.208	3.605	3.572	12.926
5287	chr15	72602875	72607067	+	0	NA	intron (NM_029640, intron 20 of 21)	intron (NM_029640, intron 20 of 21)	-58692	NM_001033876	223604	Mm.386856	NM_001033876	ENSMUSG00000036760	Kcnk9	Task3	potassium channel, subfamily K, member 9	protein-coding	2.449	0.834	0.394	2.256	1.337	0.466	2.539	1.666	1.275	1.734	0.426	0.516	3.873	4.394	2.929	2.023	1.570	2.873	2.399	1.040	0.598	2.446	1.154	0.900	4.096
60	chr1	23769466	23773717	+	0	NA	intron (NM_172124, intron 1 of 3)	intron (NM_172124, intron 1 of 3)	9665	NM_172124	280645	Mm.471661	NM_172124	ENSMUSG00000026156	B3gat2	GlcAT-S|Glcats	beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	protein-coding	0.538	nan	0.428	0.354	0.337	0.246	0.286	0.468	0.307	0.464	0.196	0.164	0.227	0.465	0.453	0.688	0.612	0.371	3.437	1.073	0.928	0.771	5.728	5.671	0.515
10585	chr4	129950547	129954525	+	0	NA	Intergenic	Intergenic	-7838	NR_040647	72225	Mm.102193	NR_040647		1700003M07Rik	-	RIKEN cDNA 1700003M07 gene	ncRNA	2.428	0.491	0.228	2.510	2.325	1.353	5.756	4.406	2.373	4.482	5.136	3.979	3.540	4.532	nan	4.824	2.099	4.241	6.054	3.695	3.485	10.210	4.047	4.441	3.438
1400	chr10	68865396	68868082	+	0	NA	Intergenic	B2_Mm1t|SINE|B2	142993	NM_177794	327766	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	2.723	0.450	0.651	2.972	5.362	5.116	1.590	0.954	2.599	4.019	0.467	0.688	1.140	1.671	1.502	2.370	2.020	nan	0.667	0.375	1.216	0.385	0.875	1.119	2.244
1067	chr1	196824076	196825430	+	0	NA	Intergenic	Intergenic	-1648038	NM_007758	12902	Mm.235387	NM_007758	ENSMUSG00000026616	Cr2	C3DR|CD21|CD35|Cr-1|Cr-2|Cr1	complement receptor 2	protein-coding	5.301	2.165	1.022	3.545	2.135	1.265	3.128	4.561	4.238	3.122	2.316	1.536	3.376	3.763	2.696	5.802	3.114	5.328	1.376	1.549	0.413	1.192	nan	0.613	nan
691	chr1	137779111	137782093	+	0	NA	Intergenic	Lx2B2|LINE|L1	-185853	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.719	0.568	0.261	nan	0.378	0.125	0.572	0.964	1.925	1.734	6.581	2.499	1.550	nan	0.985	nan	0.546	1.344	0.572	0.593	0.556	0.601	0.444	0.422	nan
9847	chr3	142222317	142223948	+	0	NA	Intergenic	Intergenic	-53904	NM_001277216	12167	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	5.615	8.702	2.890	5.974	2.146	0.976	5.152	1.121	3.319	3.216	2.409	1.375	2.400	4.019	4.643	4.430	1.735	4.458	2.670	0.820	1.190	2.395	1.347	1.148	6.393
2615	chr11	88394453	88399782	+	0	NA	intron (NM_054043, intron 8 of 13)	intron (NM_054043, intron 8 of 13)	44344	NR_039545	100628571		NR_039545	ENSMUSG00000092985	Mir378b	mir-378b|mmu-mir-378b	microRNA 378b	ncRNA	2.098	8.611	3.351	3.682	1.953	0.861	1.703	2.798	1.456	1.803	1.821	3.300	0.832	2.401	1.867	1.871	1.185	2.337	4.682	3.222	1.741	5.348	4.268	2.466	1.441
13955	chr7	152156407	152159778	+	0	NA	Intergenic	Intergenic	6843257	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	3.865	nan	0.226	nan	2.757	1.410	3.396	5.293	4.322	4.626	6.371	4.666	3.686	4.043	3.841	5.584	1.478	5.756	3.348	0.993	0.562	2.547	nan	1.064	5.532
5173	chr15	54531947	54537807	+	0	NA	Intergenic	Intergenic	-36489	NM_178920	105853	Mm.410994	NM_178920	ENSMUSG00000024479	Mal2	AI461653	mal, T cell differentiation protein 2	protein-coding	0.489	0.368	0.289	nan	0.110	0.043	nan	nan	nan	nan	0.201	0.295	0.192	0.207	0.254	nan	0.550	0.573	6.234	3.734	2.261	5.395	4.655	3.245	0.325
3134	chr11	121214797	121216349	+	0	NA	intron (NM_001001333, intron 5 of 12)	B3|SINE|B2	7930	NM_001146073	238023	Mm.275130	NM_001001333	ENSMUSG00000039307	Hexdc	BC069960	hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing	protein-coding	9.906	12.519	4.037	10.773	6.985	5.697	7.188	6.946	5.879	10.902	7.466	4.100	5.957	8.777	7.914	9.841	6.322	8.743	5.405	4.793	4.680	6.822	4.233	4.153	13.493
5245	chr15	61448786	61453048	+	0	NA	Intergenic	Intergenic	323534	NR_040350	432956	Mm.404918	NR_040350		D030024E09Rik	-	RIKEN cDNA D030024E09 gene	ncRNA	3.088	0.744	0.402	nan	0.585	0.377	2.571	nan	nan	nan	7.089	3.259	2.140	1.022	2.423	nan	2.322	2.986	0.653	0.498	0.316	1.097	0.563	0.243	2.195
5453	chr15	80825656	80835093	+	0	NA	intron (NM_177124, intron 1 of 21)	RMER10B|LTR|ERVL	31764	NM_177124	213988	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	4.019	nan	0.711	nan	3.091	2.551	nan	8.252	3.148	nan	nan	2.600	4.314	4.184	3.639	2.951	nan	4.213	1.607	1.285	1.457	nan	2.317	2.613	2.192
3171	chr12	8680439	8683233	+	0	NA	intron (NM_030723, intron 1 of 20)	intron (NM_030723, intron 1 of 20)	7155	NM_030723	80913	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	12.500	11.585	6.739	7.831	6.709	4.503	9.403	7.818	4.853	10.532	7.544	4.853	8.815	10.061	8.781	9.387	9.737	8.235	5.924	4.350	4.030	5.291	5.612	5.952	13.357
427	chr1	91086801	91089146	+	0	NA	intron (NM_001310732, intron 9 of 24)	B3|SINE|B2	34529	NM_008515	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	3.954	1.067	0.269	2.694	1.088	0.573	3.670	1.825	2.084	2.400	1.203	0.554	2.947	2.003	2.631	5.211	2.935	3.396	1.095	0.594	0.591	nan	0.604	0.405	3.810
5121	chr15	36828460	36831732	+	0	NA	Intergenic	Intergenic	-33167	NM_001253806	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	5.132	1.686	0.673	2.286	1.130	0.363	7.515	11.942	3.677	2.961	1.774	2.425	7.442	5.257	6.917	5.529	3.155	4.536	1.395	0.460	0.350	nan	0.285	0.483	3.830
6593	chr17	35399178	35401913	+	0	NA	Intergenic	RMER19B|LTR|ERVK	6446	NR_051981	15016	Mm.439648	NR_051981	ENSMUSG00000055413	H2-Q5	H-2Q5|Qa-5|Qa5|Qat-5	histocompatibility 2, Q region locus 5	pseudo	9.532	18.807	5.475	18.410	6.481	5.618	7.651	10.239	7.494	16.135	8.066	4.325	6.391	7.797	12.569	15.264	8.304	11.494	6.408	3.002	5.208	6.929	3.188	3.717	18.908
14528	chr8	108012358	108013812	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-424603	NM_010817	17463	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	2.152	0.521	0.091	2.561	2.353	1.165	0.770	1.550	1.497	1.996	0.573	0.513	2.269	4.066	2.121	2.299	3.722	1.700	0.522	0.935	0.461	nan	0.463	0.653	2.788
4735	chr14	61315060	61316869	+	0	NA	Intergenic	Intergenic	6211	NM_177337	219144	Mm.206566	NM_177337	ENSMUSG00000043157	Arl11	ARLTS1|C730007L20Rik	ADP-ribosylation factor-like 11	protein-coding	1.248	nan	0.307	0.970	0.192	0.139	1.600	3.181	1.151	2.007	1.831	0.947	3.055	4.488	1.886	2.568	1.535	2.263	0.476	0.256	0.068	0.500	0.192	0.205	2.316
82	chr1	34515872	34517989	+	0	NA	Intergenic	RMER4B|LTR|ERVK	18500	NM_009355	21755	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	8.860	6.766	2.564	6.446	3.215	1.999	8.476	7.128	5.375	6.817	5.280	3.754	9.210	8.789	7.894	14.455	8.359	7.922	3.952	2.069	2.121	3.795	2.590	3.063	12.975
15078	chr9	50971747	50979941	+	0	NA	intron (NM_178710, intron 3 of 15)	intron (NM_178710, intron 3 of 15)	33229	NM_178710	235344	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	3.294	2.995	1.096	2.189	0.859	0.285	1.063	2.216	2.568	3.219	4.507	4.533	2.003	1.949	nan	3.768	2.526	2.705	6.098	2.701	1.211	nan	3.946	2.578	5.271
3464	chr12	77967360	77970533	+	0	NA	Intergenic	Intergenic	-257709	NM_172952	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	4.042	1.189	0.786	2.428	4.513	1.738	2.874	4.354	2.947	3.322	4.665	2.955	3.285	5.724	3.171	nan	2.534	3.615	0.512	1.050	0.344	0.426	0.814	0.486	4.033
13802	chr7	137176978	137178328	+	0	NA	Intergenic	Intergenic	-57030	NR_045885	100038555	Mm.444788	NR_045885	ENSMUSG00000109722	Gm10578	ENSMUSG00000073800	predicted gene 10578	ncRNA	1.803	nan	0.267	1.403	1.503	1.093	1.258	2.770	nan	2.040	0.841	0.522	1.669	3.290	1.599	1.739	2.041	2.254	1.398	2.276	0.896	0.779	2.111	1.621	1.331
14686	chr8	122788675	122790244	+	0	NA	intron (NM_144932, intron 5 of 9)	B1_Mm|SINE|Alu	13973	NM_144932	257633	Mm.334875	NM_144932	ENSMUSG00000015016	Acsf3	BB101783	acyl-CoA synthetase family member 3	protein-coding	2.763	2.849	1.547	4.003	2.177	1.587	4.641	5.736	1.782	3.058	1.085	0.729	4.490	4.064	2.618	3.302	2.211	1.803	4.103	7.934	9.059	5.211	5.808	5.566	4.448
13470	chr7	105850620	105853160	+	0	NA	Intergenic	Intergenic	-9891	NR_033578	626055	Mm.414818	NR_033578		Gm15645	EG626055|OTTMUSG00000024782	predicted gene 15645	ncRNA	5.965	7.815	3.070	7.431	4.530	2.563	5.748	6.420	4.654	7.278	5.898	3.176	6.391	7.103	7.456	8.416	4.885	7.587	nan	2.242	2.290	4.687	2.442	2.191	10.962
12214	chr6	49046034	49048160	+	0	NA	intron (NM_053110, intron 4 of 10)	intron (NM_053110, intron 4 of 10)	10579	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	6.688	1.905	0.756	5.096	2.738	0.977	6.060	8.403	4.135	6.231	5.698	2.699	6.924	9.165	6.898	7.760	3.472	5.684	nan	0.909	0.573	2.571	1.298	0.695	5.030
14000	chr8	11329736	11334664	+	0	NA	intron (NM_009932, intron 3 of 47)	intron (NM_009932, intron 3 of 47)	-19374	NM_009931	12826	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	6.616	0.886	0.477	4.050	6.731	4.419	4.812	6.402	5.112	5.594	1.406	1.034	6.030	7.995	6.992	7.712	5.219	7.613	0.630	0.841	0.821	1.183	0.502	0.413	7.974
1763	chr10	116660911	116664137	+	0	NA	Intergenic	Intergenic	66653	NR_045345	72286	Mm.396207	NR_045345	ENSMUSG00000100198	1700030O20Rik	-	RIKEN cDNA 1700030O20 gene	ncRNA	9.345	5.530	1.624	5.938	2.174	1.337	6.179	5.185	3.530	6.368	2.592	1.294	8.085	7.651	8.170	9.125	8.701	6.322	2.628	1.586	1.106	2.789	1.655	1.797	11.635
13455	chr7	104638777	104646404	+	0	NA	TTS (NM_147049)	TTS (NM_147049)	4715	NM_147049	259051	Mm.223432	NM_147049	ENSMUSG00000070421	Olfr658	MOR34-5	olfactory receptor 658	protein-coding	2.003	0.695	0.885	1.766	5.721	5.263	2.456	1.915	1.812	2.136	0.824	0.699	2.436	nan	2.038	nan	2.521	nan	nan	1.044	0.928	0.422	0.783	1.100	1.385
4499	chr14	20996542	21002080	+	0	NA	intron (NM_009502, intron 8 of 20)	intron (NM_009502, intron 8 of 20)	53131	NM_018829	55946	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	3.746	8.380	3.049	2.833	1.499	0.937	2.749	5.575	nan	1.952	2.310	1.102	2.011	3.137	5.295	6.148	3.624	4.086	0.713	0.631	0.536	nan	0.542	0.307	7.756
10999	chr4	155365950	155368308	+	0	NA	Intergenic	Intergenic	-5701	NM_008860	18762	Mm.28561	NM_008860	ENSMUSG00000029053	Prkcz	AI098070|C80388|Pkcz|R74924|aPKCzeta|nPKC-zeta|zetaPKC	protein kinase C, zeta	protein-coding	6.865	14.129	3.775	9.957	2.871	2.680	6.098	6.434	4.711	12.426	6.719	3.599	6.327	7.274	9.036	9.967	2.968	8.323	5.143	1.763	1.904	5.197	1.666	2.699	16.601
10888	chr4	148322032	148323654	+	0	NA	Intergenic	Intergenic	-34878	NM_001083342	242748	Mm.33873	NM_001083342	ENSMUSG00000041544	Ptchd2	Disp3|G630052C06Rik|RNDEu-2	patched domain containing 2	protein-coding	2.516	nan	0.318	3.743	2.192	1.261	2.251	2.199	1.434	1.336	2.705	1.813	2.891	3.489	3.127	1.536	0.775	3.302	11.000	4.398	3.370	10.260	8.019	6.204	4.559
69	chr1	31205608	31210270	+	0	NA	intron (NR_033445, intron 1 of 2)	intron (NR_033445, intron 1 of 2)	14717	NR_033445	70988	Mm.161414	NM_027637	ENSMUSG00000086727	4931428L18Rik	4930563O14Rik	RIKEN cDNA 4931428L18 gene	ncRNA	6.559	nan	0.841	4.101	4.966	2.434	2.843	5.886	5.582	6.136	1.811	3.005	5.752	4.122	3.878	6.228	7.408	5.490	0.652	0.888	0.638	1.401	0.472	0.494	2.890
4299	chr13	96403309	96405618	+	0	NA	exon (NM_026173, exon 11 of 13)	exon (NM_026173, exon 11 of 13)	16169	NM_026173	67463	Mm.86472	NM_026173	ENSMUSG00000021671	Poc5	1200014M14Rik|AV144706	POC5 centriolar protein	protein-coding	5.811	0.583	0.540	2.363	1.579	1.376	6.174	3.631	2.290	2.789	4.195	1.449	3.966	5.290	3.841	3.240	2.485	3.342	1.068	0.794	1.168	1.148	0.947	0.293	5.176
14985	chr9	41991451	41992884	+	0	NA	intron (NM_011436, intron 33 of 47)	intron (NM_011436, intron 33 of 47)	132122	NM_011436	20660	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	2.055	2.289	1.117	2.644	0.996	0.953	2.121	1.461	1.916	1.957	2.537	0.648	1.934	3.714	2.255	3.302	nan	4.014	nan	0.660	0.647	1.196	0.607	0.131	4.251
9325	chr3	57271846	57276469	+	0	NA	Intergenic	L1_Rod|LINE|L1	27762	NM_008536	17112	Mm.856	NM_008536	ENSMUSG00000027800	Tm4sf1	L6|M3s1	transmembrane 4 superfamily member 1	protein-coding	5.495	0.791	0.566	4.248	4.672	2.295	5.830	3.255	3.988	4.058	2.670	1.659	7.244	8.084	6.069	5.849	5.202	6.572	0.774	0.962	0.314	1.460	0.537	0.474	6.530
224	chr1	59968509	59973765	+	0	NA	intron (NM_001037725, intron 6 of 7)	intron (NM_001037725, intron 6 of 7)	58131	NM_001037725	72750	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	9.003	6.883	2.988	9.120	5.268	4.696	6.814	6.127	5.757	11.837	4.075	2.678	9.056	8.820	7.202	12.070	8.367	7.916	2.979	2.945	3.404	4.340	3.203	3.214	10.662
11092	chr5	28821408	28823534	+	0	NA	Intergenic	B4|SINE|B4	-355370	NM_009170	20423	Mm.57202	NM_009170	ENSMUSG00000002633	Shh	9530036O11Rik|Dsh|Hhg1|Hx|Hxl3|M100081	sonic hedgehog	protein-coding	3.573	0.447	0.426	nan	1.947	0.807	5.121	4.530	4.236	3.868	3.315	2.567	4.450	6.344	6.019	6.506	3.938	5.860	1.087	0.631	0.659	1.848	0.718	0.801	4.832
12550	chr6	100783193	100785338	+	0	NA	intron (NM_198612, intron 4 of 6)	B4|SINE|B4	-49373	NM_182939	232314	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	5.720	11.129	5.667	4.851	4.470	3.595	6.947	7.194	5.072	9.376	4.528	3.081	4.448	6.784	6.883	9.040	5.887	6.850	3.284	nan	2.716	3.663	3.297	3.042	8.640
11001	chr4	155483235	155484723	+	0	NA	Intergenic	(CAAAC)n|Simple_repeat|Simple_repeat	-7382	NM_001160017	14688	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	5.785	7.861	6.089	5.270	5.224	5.119	7.449	6.295	3.294	5.366	5.732	3.866	4.598	6.577	5.673	6.003	5.152	3.678	4.089	3.211	3.652	3.473	4.069	4.420	8.537
2711	chr11	96825934	96842341	+	0	NA	Intergenic	Intergenic	-4169	NM_008686	18023	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	8.625	nan	2.170	8.329	6.061	4.339	6.292	6.561	6.493	8.053	6.870	3.387	6.284	10.593	7.732	8.606	nan	7.853	2.060	nan	2.239	2.278	nan	nan	8.452
9608	chr3	101356640	101358021	+	0	NA	Intergenic	Intergenic	-19795	NM_207205	78908	Mm.257997	NM_207205	ENSMUSG00000042035	Igsf3	1700016K10Rik|2810035F16Rik|4833439O17Rik|mKIAA0466	immunoglobulin superfamily, member 3	protein-coding	3.721	0.388	0.664	1.037	1.662	1.031	6.141	7.174	2.448	3.077	nan	1.081	4.887	4.409	3.199	5.489	5.973	5.204	0.787	1.556	1.548	1.067	1.273	1.525	5.042
13899	chr7	149006917	149010277	+	0	NA	Intergenic	Intergenic	3693762	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	nan	nan	0.078	nan	0.173	0.072	0.663	4.036	nan	1.276	0.428	1.277	1.015	1.227	1.066	0.988	0.578	0.766	1.240	0.434	0.362	1.552	nan	0.520	nan
7966	chr2	11455170	11458091	+	0	NA	Intergenic	B4A|SINE|B4	45460	NM_001177754	170768	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	5.751	3.985	2.112	7.075	4.243	3.036	2.272	7.573	3.163	3.679	2.760	1.283	3.030	7.354	2.740	4.479	5.092	3.183	1.320	1.993	1.888	2.106	1.725	1.818	4.114
2393	chr11	70009277	70011501	+	0	NA	TTS (NM_007888)	TTS (NM_007888)	-1654	NR_029758	723896		NR_029758	ENSMUSG00000065534	Mir324	Mirn324|mir-324|mmu-mir-324	microRNA 324	ncRNA	1.869	1.172	0.435	2.155	1.982	1.374	1.150	1.850	2.449	2.287	7.393	6.026	2.161	2.210	1.635	1.799	1.376	1.679	1.048	1.095	0.915	1.072	nan	1.192	0.859
15317	chr9	75477867	75480671	+	0	NA	Intergenic	Intergenic	37745	NM_001039522	235497	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	2.999	4.670	1.790	5.171	1.298	0.369	1.131	0.769	2.384	2.260	1.260	0.496	0.865	1.680	1.672	1.909	1.355	2.378	2.137	nan	1.261	1.265	1.066	0.770	nan
10515	chr4	125791604	125796656	+	0	NA	Intergenic	(CACCAT)n|Simple_repeat|Simple_repeat	128180	NR_015560	72395	Mm.112888	NR_015560	ENSMUSG00000085562	2610028E06Rik	BB043107	RIKEN cDNA 2610028E06 gene	ncRNA	1.571	1.273	0.736	1.943	0.811	0.666	1.329	1.186	1.628	1.766	1.299	0.963	0.781	1.312	nan	1.751	1.089	2.112	2.667	3.336	2.815	5.827	2.646	2.373	2.341
426	chr1	91013062	91022920	+	0	NA	intron (NM_001111312, intron 1 of 12)	B1F|SINE|Alu	19264	NM_001111312	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	3.572	0.663	0.346	3.216	1.737	0.887	3.966	3.530	2.459	2.456	5.174	2.517	3.888	3.876	3.601	6.119	2.514	5.211	1.634	1.061	0.609	nan	0.911	0.537	4.662
9043	chr2	167939365	167941400	+	0	NA	intron (NM_011201, intron 1 of 8)	intron (NM_011201, intron 1 of 8)	8055	NM_011201	19246	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	4.586	0.740	0.445	2.891	2.350	1.932	3.920	5.131	3.204	2.372	3.951	1.908	3.958	4.604	3.929	4.925	5.034	nan	nan	1.475	1.129	1.158	0.813	0.409	6.309
15059	chr9	49604979	49606625	+	0	NA	intron (NM_001081445, intron 1 of 17)	intron (NM_001081445, intron 1 of 17)	87514	NR_029465	100036537	Mm.437541	NR_029465	ENSMUSG00000079564	Gm11149	ENSMUSG00000060603|ENSMUSG00000079564	predicted gene 11149	ncRNA	0.206	0.529	0.138	0.474	0.116	0.226	0.385	0.225	0.196	0.719	0.406	0.242	0.217	0.442	nan	nan	0.315	0.445	5.816	1.657	2.375	8.185	3.299	3.800	1.455
7662	chr19	24574881	24576337	+	0	NA	Intergenic	Intergenic	-19782	NM_008846	18719	Mm.217214	NM_008846	ENSMUSG00000024867	Pip5k1b	PI4P5K-I[b]|PIP5K1-beta|PIP5KIbeta|Pipk5b|STM7	phosphatidylinositol-4-phosphate 5-kinase, type 1 beta	protein-coding	2.137	0.444	0.639	1.719	1.656	0.587	1.456	5.009	1.483	1.702	nan	0.371	2.563	2.833	2.680	4.025	3.870	3.222	nan	0.357	0.248	1.019	nan	0.353	2.840
3222	chr12	21356467	21360808	+	0	NA	intron (NR_102380, intron 1 of 15)	intron (NR_102380, intron 1 of 15)	14995	NR_102380	11491	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	3.460	0.843	0.648	1.356	2.362	1.449	0.857	1.197	1.906	1.914	0.743	0.557	5.689	4.715	1.105	2.500	2.893	3.159	0.513	0.605	0.611	0.358	0.649	0.745	4.413
1435	chr10	75164807	75169518	+	0	NA	intron (NM_001081412, intron 15 of 22)	intron (NM_001081412, intron 15 of 22)	-44911	NM_153406	74392	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	1.669	1.459	0.675	nan	1.163	0.617	2.540	1.368	1.415	1.434	1.052	0.479	1.822	4.228	nan	1.996	1.256	2.529	nan	0.602	0.383	1.112	0.273	0.207	3.282
279	chr1	71965345	71967575	+	0	NA	intron (NR_040454, intron 1 of 2)	MER103C|DNA|hAT-Charlie	38735	NR_040454	71134	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	3.192	0.309	0.293	1.035	2.996	1.561	2.906	3.652	2.731	2.989	2.217	4.066	4.796	4.935	1.959	2.258	nan	2.157	0.661	0.688	0.349	0.498	0.741	0.114	1.156
14474	chr8	95751745	95754580	+	0	NA	promoter-TSS (NR_106041)	promoter-TSS (NR_106041)	52	NR_106041	102465650		NR_106041	ENSMUSG00000106145	Mir7073	mmu-mir-7073	microRNA 7073	ncRNA	7.109	0.206	0.232	3.316	2.659	1.689	4.843	8.574	2.936	4.794	1.742	2.083	8.359	8.197	6.067	7.459	8.274	6.280	1.394	1.209	0.622	0.656	1.503	1.113	7.388
9519	chr3	94787593	94789591	+	0	NA	Intergenic	Intergenic	-2077	NM_001037711	70737	Mm.87634	NM_001037711	ENSMUSG00000068876	Cgn	6330408J11Rik	cingulin	protein-coding	2.241	1.225	0.691	3.509	2.241	1.409	3.726	3.778	2.118	2.624	nan	0.541	4.303	6.359	3.857	5.297	3.643	3.705	0.784	0.478	0.203	0.827	0.491	0.160	6.071
483	chr1	99889301	99897346	+	0	NA	intron (NM_172851, intron 1 of 23)	intron (NM_172851, intron 1 of 23)	120558	NM_172851	241175	Mm.251301	NM_172851	ENSMUSG00000067028	Cntnap5b	C230078M14Rik|Caspr5-2	contactin associated protein-like 5B	protein-coding	6.779	nan	0.453	3.256	2.311	1.309	4.961	nan	5.394	6.563	4.249	4.438	6.736	5.838	5.042	5.558	4.789	5.131	nan	3.133	1.807	nan	4.045	2.762	nan
4145	chr13	54195709	54198405	+	0	NA	intron (NM_001010973, intron 1 of 2)	intron (NM_001010973, intron 1 of 2)	4928	NM_008286	15466	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	-	histamine receptor H2	protein-coding	4.360	1.599	0.387	2.506	2.467	0.894	4.910	4.154	3.782	4.758	3.075	1.315	4.633	6.014	4.616	3.787	2.054	5.114	1.310	0.605	0.275	0.922	0.454	0.214	3.722
11468	chr5	97425383	97428786	+	0	NA	intron (NR_045981, intron 2 of 7)	L1ME3A|LINE|L1	29924	NM_010294	14626	Mm.61206	NM_010294	ENSMUSG00000050553	Gk2	GKTA|Gk-rs2	glycerol kinase 2	protein-coding	8.038	12.046	5.021	9.259	4.851	3.026	5.903	5.139	5.481	10.234	5.499	2.913	5.698	8.895	8.047	9.209	6.109	7.943	4.866	2.440	3.766	4.549	2.822	4.972	10.793
2055	chr11	30671478	30672806	+	0	NA	Intergenic	MIRc|SINE|MIR	-22746	NM_029344	75572	Mm.390319	NM_029344	ENSMUSG00000060923	Acyp2	2310004B09Rik	acylphosphatase 2, muscle type	protein-coding	9.300	12.150	3.016	13.814	8.641	8.826	10.703	6.927	4.793	13.974	7.069	4.872	7.051	10.938	8.813	9.807	6.306	8.469	6.600	3.916	6.976	7.011	5.735	7.567	14.429
5576	chr15	93314040	93316459	+	0	NA	intron (NM_024189, intron 2 of 3)	Lx3_Mus|LINE|L1	21686	NR_028315	67057	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	2.730	4.315	3.022	3.967	1.455	0.828	0.912	0.955	2.102	1.785	1.002	0.839	0.923	1.390	1.462	nan	1.725	2.550	0.774	1.229	1.226	0.727	0.909	1.029	1.525
1487	chr10	79597455	79606271	+	0	NA	Intergenic	MTC|LTR|ERVL-MaLR	12155	NM_198614	237397	Mm.334207	NM_198614	ENSMUSG00000045912	C2cd4c	4932409I22Rik|Fam148c|Gm238	C2 calcium-dependent domain containing 4C	protein-coding	5.133	3.959	1.662	4.675	3.936	2.623	4.934	6.192	2.960	5.885	3.133	1.740	3.997	6.978	6.000	7.179	5.692	4.990	nan	1.719	2.899	4.526	2.869	3.701	9.343
9367	chr3	65759871	65763097	+	0	NA	intron (NM_001166659, intron 6 of 12)	L1Md_A|LINE|L1	95256	NM_001166659	624866	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	10.579	13.508	4.756	12.697	10.810	9.137	12.722	10.119	7.631	16.267	7.173	4.809	11.580	12.268	10.914	12.148	8.063	12.190	7.444	3.413	5.626	8.455	4.820	7.829	16.216
4698	chr14	56374283	56385065	+	0	NA	intron (NM_138652, intron 12 of 22)	intron (NM_138652, intron 12 of 22)	14606	NM_138652	192113	Mm.273271	NM_138652	ENSMUSG00000022229	Atp12a	Atp1al1|HKalpha2|cHKA	ATPase, H+/K+ transporting, nongastric, alpha polypeptide	protein-coding	4.150	nan	0.576	2.787	2.217	1.391	4.317	7.104	2.695	3.666	4.856	2.233	4.424	6.341	5.825	5.418	3.874	4.224	0.951	1.203	1.161	1.240	1.081	1.278	6.178
13892	chr7	148577665	148579983	+	0	NA	Intergenic	Intergenic	3263989	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	9.149	nan	1.598	7.163	6.791	6.051	5.318	13.026	4.686	5.943	6.558	3.933	6.438	8.558	7.404	7.120	5.760	6.820	2.863	1.822	2.889	3.030	nan	1.919	10.057
13866	chr7	146575157	146580120	+	0	NA	Intergenic	Intergenic	1262803	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	3.569	nan	0.658	4.982	2.301	1.018	1.867	2.627	nan	3.606	2.221	1.448	1.628	2.837	2.779	3.392	1.754	4.062	2.858	2.513	1.691	4.867	nan	1.481	4.411
9196	chr3	27793588	27806608	+	0	NA	Intergenic	Intergenic	-89659	NM_173182	72007	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	2.082	0.867	0.488	nan	1.072	0.621	nan	3.330	nan	1.689	5.026	4.340	2.570	2.097	nan	1.712	2.262	nan	4.176	3.189	2.083	6.713	2.873	1.884	1.742
1540	chr10	82784742	82789516	+	0	NA	Intergenic	RLTR17B_Mm|LTR|ERVK	-22988	NM_010914	18045	Mm.245998	NM_010914	ENSMUSG00000020248	Nfyb	AA985999|Cbf-A	nuclear transcription factor-Y beta	protein-coding	2.616	7.096	4.726	nan	1.040	0.666	0.649	0.818	0.862	0.715	0.381	0.433	0.709	1.106	nan	0.843	0.994	1.021	4.210	4.895	4.052	5.130	3.809	2.926	1.024
7360	chr18	69356688	69359458	+	0	NA	intron (NM_013685, intron 3 of 19)	intron (NM_013685, intron 3 of 19)	12352	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	3.248	1.155	0.699	3.335	3.057	1.211	1.493	1.568	2.396	2.903	2.124	1.609	1.188	1.828	1.892	1.779	1.408	1.919	5.183	4.467	3.251	6.298	7.543	6.193	2.458
3075	chr11	119132078	119133609	+	0	NA	Intergenic	Intergenic	21294	NR_105899	102465563		NR_105899	ENSMUSG00000098704	Mir6934	Gm27523|mmu-mir-6934	microRNA 6934	ncRNA	1.704	nan	0.490	0.864	1.859	1.811	3.906	1.202	1.456	nan	1.251	0.515	3.063	3.627	1.892	3.212	2.199	2.554	0.398	nan	0.572	0.543	0.562	0.934	2.372
14938	chr9	31823261	31832452	+	0	NA	Intergenic	Intergenic	85429	NM_013800	12023	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	0.700	0.742	0.536	0.986	0.340	0.202	0.359	0.642	0.694	0.466	0.784	0.749	0.333	0.322	0.373	nan	0.482	0.774	4.106	3.499	2.447	6.374	3.837	2.833	0.559
14495	chr8	97257246	97260496	+	0	NA	Intergenic	Lx6|LINE|L1	-712898	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	5.263	1.093	0.944	3.358	3.600	2.858	3.346	2.637	2.100	2.709	1.246	1.267	2.797	4.142	2.088	3.179	3.553	2.453	7.838	7.822	5.185	6.962	11.272	8.520	3.554
2064	chr11	32247336	32250086	+	0	NA	intron (NR_104306, intron 5 of 13)	AT_rich|Low_complexity|Low_complexity	18996	NM_181569	17168	Mm.263161	NM_181569	ENSMUSG00000020289	Nprl3	Aag|CGTHBA|HS-26|HS-40|Mare|Phg|Prox1|m(alpha)RE	nitrogen permease regulator-like 3	protein-coding	8.246	3.049	0.955	nan	4.008	2.455	6.166	4.949	4.213	7.106	8.123	5.370	4.109	7.178	5.903	7.092	3.920	5.474	2.770	2.389	3.327	3.616	2.605	3.334	7.347
7983	chr2	17635217	17643430	+	0	NA	intron (NM_028757, intron 2 of 6)	intron (NM_028757, intron 2 of 6)	75809	NR_105847	102465964		NR_105847	ENSMUSG00000099161	Mir6419	Gm27713|mmu-mir-6419	microRNA 6419	ncRNA	7.027	0.510	0.287	4.730	3.931	2.547	4.211	5.060	5.712	5.809	2.625	1.557	8.161	7.367	4.014	6.299	5.726	6.903	3.804	2.601	1.789	2.414	4.068	2.586	6.620
99	chr1	36635774	36638563	+	0	NA	intron (NM_001126046, intron 4 of 14)	intron (NM_001126046, intron 4 of 14)	-43836	NM_027957	381337	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	4.265	2.127	0.876	4.148	1.489	0.353	4.861	3.582	2.286	3.634	3.301	2.367	3.678	4.195	3.942	8.260	5.425	3.551	6.641	4.701	3.501	8.759	5.755	4.549	6.846
4767	chr14	65484144	65486946	+	0	NA	Intergenic	B3|SINE|B2	-60073	NM_010932	18155	Mm.16347	NM_010932	ENSMUSG00000045731	Pnoc	N/OFQ|Npnc1|OFQ/N	prepronociceptin	protein-coding	8.433	5.185	2.832	4.536	4.038	2.128	2.922	6.443	4.243	4.748	2.240	1.692	3.321	5.547	4.984	5.959	3.626	6.072	3.222	nan	1.079	1.594	3.075	1.440	6.220
5424	chr15	79198276	79201651	+	0	NA	intron (NR_029470, intron 2 of 4)	intron (NR_029470, intron 2 of 4)	-29210	NM_008837	18693	Mm.259464	NM_008837	ENSMUSG00000068206	Pick1	Prkcabp	protein interacting with C kinase 1	protein-coding	8.840	nan	0.459	12.812	5.129	2.551	8.010	14.320	7.874	8.958	nan	4.138	9.706	10.068	11.130	10.465	nan	12.806	6.198	2.743	2.273	nan	3.848	3.165	14.557
13469	chr7	105719825	105721976	+	0	NA	Intergenic	Intergenic	15684	NM_025897	101867	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	2.091	1.593	0.602	6.454	1.855	1.298	0.680	1.040	1.519	1.452	0.604	0.234	0.556	nan	1.515	1.373	0.807	2.005	nan	0.948	0.911	1.087	0.697	0.467	2.035
11687	chr5	123270380	123272424	+	0	NA	Intergenic	Intergenic	43212	NM_026000	67151	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	5.038	6.577	1.916	5.595	2.614	2.330	4.289	4.397	3.637	5.593	3.743	2.765	4.046	7.237	6.235	6.493	5.485	4.422	5.342	2.339	5.024	4.744	3.411	5.795	nan
5218	chr15	59260320	59263075	+	0	NA	Intergenic	Intergenic	-45251	NR_045613	100416830	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	3.899	1.530	0.927	3.173	1.303	0.363	4.772	6.157	nan	2.806	2.058	2.208	6.331	6.090	6.628	nan	5.066	4.996	2.528	0.776	0.469	2.321	0.864	0.573	3.943
7758	chr19	40341224	40346440	+	0	NA	intron (NM_001034963, intron 12 of 22)	intron (NM_001034963, intron 12 of 22)	58478	NM_001034964	20411	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	4.944	2.747	1.220	5.883	3.648	2.800	7.845	7.558	4.861	5.217	3.285	5.121	5.770	4.660	6.408	8.076	9.880	5.091	0.897	1.340	1.036	1.138	0.756	0.878	7.922
6295	chr17	5045282	5047089	+	0	NA	intron (NM_001085355, intron 2 of 19)	intron (NM_001085355, intron 2 of 19)	51111	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	2.530	1.701	1.081	2.112	1.544	0.764	2.050	1.350	2.283	1.998	1.055	0.926	2.751	3.278	2.548	4.108	2.962	3.208	nan	0.959	0.193	0.894	0.870	0.473	2.412
5164	chr15	52256118	52259052	+	0	NA	Intergenic	(GAAAA)n|Simple_repeat|Simple_repeat	-37968	NM_172816	239436	Mm.208831	NM_172816	ENSMUSG00000022315	Slc30a8	C820002P14Rik|ZnT-8|ZnT8	solute carrier family 30 (zinc transporter), member 8	protein-coding	3.369	0.711	0.229	2.008	0.922	0.280	4.460	1.299	2.462	3.988	0.299	0.160	4.531	3.373	5.049	4.632	5.295	4.218	0.693	0.447	0.321	0.602	0.550	0.087	3.326
533	chr1	122161288	122162277	+	0	NA	Intergenic	Intergenic	-593802	NM_025860	66942	Mm.44219	NM_025860	ENSMUSG00000001674	Ddx18	2310005B10Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding	3.163	6.299	1.867	4.802	1.399	0.379	0.859	2.797	2.051	3.743	4.874	1.442	2.191	3.648	3.710	6.372	1.829	3.324	1.929	1.793	1.212	2.794	1.240	0.380	6.955
15309	chr9	75260619	75263368	+	0	NA	intron (NM_001081322, intron 10 of 40)	intron (NM_001081322, intron 10 of 40)	29979	NM_001081322	208943	Mm.41339	NM_001081322	ENSMUSG00000033590	Myo5c	9130003O20Rik|BB085560|C330029I24	myosin VC	protein-coding	3.667	3.428	0.999	3.117	2.305	1.307	3.248	3.754	3.164	2.958	3.592	1.883	4.312	5.302	4.183	4.092	1.427	4.018	2.721	nan	0.616	1.095	1.056	0.733	5.301
11062	chr5	23177778	23178718	+	0	NA	intron (NM_029990, intron 2 of 2)	Lx8|LINE|L1	256105	NR_040469	269630	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	2.891	0.448	0.168	nan	2.080	0.697	1.900	2.366	1.056	1.951	2.666	0.960	1.227	3.673	3.270	2.494	2.412	2.051	0.465	0.271	0.351	0.515	0.429	0.221	2.236
4446	chr13	118390682	118393003	+	0	NA	Intergenic	Intergenic	-4590	NM_021556	59054	Mm.143810	NM_021556	ENSMUSG00000021731	Mrps30	2610020A16Rik|AA968347|PAP|Pdcd9	mitochondrial ribosomal protein S30	protein-coding	0.257	0.396	0.166	0.261	0.110	0.052	0.313	0.460	0.140	0.312	0.297	0.087	0.048	0.224	0.157	0.293	0.149	0.329	4.641	1.983	2.858	8.568	4.917	5.903	nan
2080	chr11	33771680	33773646	+	0	NA	intron (NM_001190885, intron 1 of 8)	intron (NM_001190885, intron 1 of 8)	70922	NM_027398	70357	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	5.725	1.294	0.880	3.274	1.956	0.930	2.697	10.600	7.741	10.288	4.456	5.032	6.085	10.312	4.615	2.724	3.244	5.203	1.459	0.829	0.561	2.415	0.981	0.466	3.992
13125	chr7	35085594	35092054	+	0	NA	Intergenic	Intergenic	-30469	NM_001287521	12606	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	5.606	2.256	1.484	7.379	5.307	4.174	2.765	2.694	4.313	4.655	2.075	1.277	2.511	3.815	3.270	4.538	2.823	5.341	1.172	1.328	1.290	1.288	0.838	0.668	3.360
11996	chr5	151266776	151272019	+	0	NA	Intergenic	Intergenic	-79204	NM_146258	243362	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	5.478	1.082	0.684	5.806	3.483	2.037	4.184	2.557	nan	3.947	2.072	1.081	3.360	4.751	3.832	nan	3.005	4.467	1.177	1.198	0.946	0.804	1.132	0.732	3.387
4448	chr13	120217098	120220935	+	0	NA	Intergenic	L1Md_F3|LINE|L1	-44079	NM_001310627	236546	Mm.247428	NM_199060	ENSMUSG00000095071	AF067061	-	cDNA sequence AF067061	protein-coding	6.475	7.795	2.423	7.565	6.216	3.842	8.861	5.452	5.394	14.093	5.812	3.615	6.209	5.026	6.847	7.668	5.830	7.285	1.905	1.688	2.025	3.669	2.055	3.565	12.423
2416	chr11	71812474	71813813	+	0	NA	Intergenic	Intergenic	62440	NM_177618	216881	Mm.48648	NM_177618	ENSMUSG00000020811	Wscd1	mKIAA0523	WSC domain containing 1	protein-coding	2.088	1.404	0.668	1.408	1.363	0.716	2.205	0.962	1.366	2.032	1.227	1.141	1.690	3.666	2.552	1.826	2.041	2.203	1.205	0.923	0.989	1.504	nan	0.491	1.349
6045	chr16	34961362	34963541	+	0	NA	intron (NM_139300, intron 21 of 31)	intron (NM_139300, intron 21 of 31)	-3457	NR_045723	278725	Mm.436927	NR_045722		E130310I04Rik	A930019C19Rik	RIKEN cDNA E130310I04 gene	ncRNA	4.177	1.141	0.486	5.320	1.649	0.999	1.313	1.548	2.743	2.728	0.685	0.842	2.582	4.436	3.157	nan	2.387	4.833	0.785	0.707	0.256	0.948	0.307	0.390	nan
10143	chr4	61947229	61949300	+	0	NA	Intergenic	Intergenic	105853	NM_001012323	381530	Mm.460005	NM_001012323	ENSMUSG00000078672	Mup20	Gm12560|Mup24|OTTMUSG00000007485|darcin	major urinary protein 20	protein-coding	10.013	4.732	1.712	8.085	4.640	3.272	6.659	8.623	5.132	8.054	5.012	2.270	5.727	9.903	7.250	8.811	5.447	7.922	8.181	3.615	4.230	8.496	4.344	4.457	12.254
3852	chr13	14704254	14706287	+	0	NA	Intergenic	Lx3B|LINE|L1	75012	NM_134067	105351	Mm.41450	NM_134067	ENSMUSG00000039182	AW209491	-	expressed sequence AW209491	protein-coding	7.984	9.269	3.302	9.651	6.484	2.926	6.360	5.342	7.764	8.181	6.176	4.567	7.223	nan	10.673	9.191	5.504	10.274	4.956	1.896	2.102	4.890	2.783	2.841	nan
6923	chr17	84831018	84836279	+	0	NA	Intergenic	Intergenic	-42862	NM_028233	72416	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	1.094	7.844	5.787	1.572	1.049	0.657	1.091	0.984	nan	1.065	0.486	0.309	0.973	1.005	1.013	1.452	1.387	1.256	0.722	0.703	0.761	0.614	0.398	0.386	1.174
6556	chr17	34166643	34170055	+	0	NA	Intergenic	Intergenic	15158	NM_010387	14999	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	8.282	12.192	3.686	7.372	4.917	3.550	10.063	7.222	4.364	11.043	7.166	3.127	5.755	9.037	8.007	10.556	6.140	7.564	4.240	3.048	3.393	4.185	3.533	4.595	15.732
14796	chr8	128510601	128512126	+	0	NA	Intergenic	Intergenic	152122	NR_035436	100316680		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	3.299	nan	0.421	nan	1.411	0.681	nan	2.173	2.117	3.367	0.674	0.632	3.092	4.762	nan	5.074	3.126	2.537	nan	0.834	0.228	nan	0.999	nan	3.510
4558	chr14	27456929	27459693	+	0	NA	intron (NM_028945, intron 11 of 23)	intron (NM_028945, intron 11 of 23)	29464	NM_001114879	218850	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	9.866	12.310	4.803	10.357	4.748	2.504	8.070	11.609	7.048	9.666	7.042	4.851	8.595	10.761	11.572	11.856	nan	9.151	5.598	2.557	2.125	6.949	2.894	2.428	13.588
263	chr1	66875134	66881634	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	-15075	NM_007381	11363	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	3.156	0.620	0.414	1.138	0.953	0.376	3.604	2.191	3.075	2.184	0.516	0.450	4.039	2.489	3.433	6.635	4.321	3.735	0.772	0.654	0.220	0.557	0.425	0.225	1.666
7550	chr19	10019610	10022139	+	0	NA	intron (NM_001347430, intron 1 of 8)	intron (NM_001347430, intron 1 of 8)	2646	NM_144538	74760	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	5.182	2.856	1.334	5.270	5.483	3.015	2.272	5.550	3.789	3.856	3.184	1.219	2.366	4.664	3.413	3.391	2.150	4.956	0.622	0.772	0.587	0.935	0.661	0.565	3.059
10971	chr4	153670684	153675838	+	0	NA	Intergenic	MTEa|LTR|ERVL-MaLR	-190431	NM_001099299	230959	Mm.318874	NM_001099299	ENSMUSG00000039546	Ajap1	Gm573	adherens junction associated protein 1	protein-coding	3.310	2.549	0.768	3.280	1.904	1.439	6.249	6.057	2.108	3.669	2.675	2.162	4.433	5.704	5.856	5.801	2.459	4.588	4.142	0.639	0.904	5.529	1.849	1.867	7.597
3746	chr12	112931695	112933761	+	0	NA	Intergenic	Intergenic	-3233	NM_010588	16450	Mm.186146	NM_010588	ENSMUSG00000002799	Jag2	D12Ggc2e|Serh|mJagged2-1|sm	jagged 2	protein-coding	2.721	2.931	0.627	6.286	0.975	0.574	2.738	3.346	nan	2.923	1.425	0.830	2.519	3.635	3.288	2.351	1.226	1.670	4.038	1.191	1.414	6.202	2.539	2.630	3.067
12911	chr7	4923200	4924778	+	0	NA	exon (NM_201355, exon 3 of 3)	exon (NM_201355, exon 3 of 3)	1738	NM_201355	269854	Mm.42652	NM_201355	ENSMUSG00000035285	Nat14	BC047219	N-acetyltransferase 14	protein-coding	3.353	0.864	0.423	3.709	3.359	1.540	2.949	1.737	1.859	2.650	0.935	1.239	2.576	3.666	2.992	1.631	1.927	2.758	1.358	1.606	0.805	1.940	1.447	0.669	2.093
7628	chr19	21345545	21350626	+	0	NA	Intergenic	Lx9|LINE|L1	75807	NM_009551	22682	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	9.515	10.877	4.150	9.587	7.428	4.594	9.280	13.562	6.980	12.358	7.427	4.201	8.442	11.546	9.880	10.770	11.661	11.463	3.819	2.214	2.751	5.840	4.246	4.012	13.006
5919	chr16	23305001	23309482	+	0	NA	intron (NM_001252506, intron 1 of 6)	intron (NM_001252506, intron 1 of 6)	16771	NM_001252506	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	2.258	11.746	5.628	2.495	2.337	1.314	3.128	1.938	2.265	2.784	1.359	0.987	nan	4.239	2.966	4.371	2.973	2.810	0.951	1.391	0.590	0.813	nan	0.481	3.347
4536	chr14	25352609	25354878	+	0	NA	Intergenic	Intergenic	-105442	NM_001310666	328365	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|ENSMUSG00000072684|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.261	0.724	0.625	0.414	0.113	0.136	0.365	0.512	0.459	0.319	0.790	0.349	0.288	0.276	0.311	nan	nan	nan	8.447	3.238	1.893	5.460	5.000	3.717	0.487
12431	chr6	89484817	89487069	+	0	NA	intron (NM_025351, intron 4 of 7)	intron (NM_025351, intron 4 of 7)	109709	NM_025351	66098	Mm.20313	NM_025351	ENSMUSG00000030086	Chchd6	0710001P09Rik|1700021B03Rik	coiled-coil-helix-coiled-coil-helix domain containing 6	protein-coding	3.486	0.653	0.659	nan	3.726	3.071	6.134	3.111	3.649	2.679	1.745	1.464	5.549	4.699	5.231	5.927	4.149	nan	nan	0.750	0.647	0.722	0.851	0.823	3.550
3361	chr12	58208774	58210938	+	0	NA	Intergenic	Intergenic	-1948	NM_009216	20605	Mm.278336	NM_009216	ENSMUSG00000035431	Sstr1	SRIF-2|SS-1-R|SS1-R|SS1R|Smstr-1|Smstr1|sst1	somatostatin receptor 1	protein-coding	5.395	nan	0.392	1.489	1.304	0.511	2.195	0.440	2.168	2.683	1.639	0.504	8.378	4.279	nan	4.258	6.033	2.623	0.861	0.463	0.269	0.625	0.453	0.707	4.349
2985	chr11	115636052	115642535	+	0	NA	Intergenic	Intergenic	-10998	NM_001252395	67283	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	4.470	nan	0.586	5.605	3.381	1.757	nan	5.524	3.376	4.449	3.459	1.724	4.807	7.726	5.258	6.131	4.067	nan	5.380	nan	2.474	5.440	3.271	2.967	5.080
3593	chr12	87621536	87625153	+	0	NA	TTS (NM_001177573)	TTS (NM_001177573)	4435	NM_001177564	100042776	Mm.458802	NM_001177564	ENSMUSG00000092019	Gm4027	-	predicted gene 4027	protein-coding	0.672	8.417	6.829	0.263	0.461	0.240	0.465	0.515	0.463	0.444	0.552	0.363	0.320	0.331	0.259	nan	0.773	0.578	2.018	1.140	1.420	1.171	1.307	1.711	nan
9148	chr3	14886119	14891671	+	0	NA	intron (NM_009801, intron 2 of 6)	intron (NM_009801, intron 2 of 6)	2469	NM_009801	12349	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	5.978	nan	0.863	6.208	2.720	1.666	2.571	2.078	3.982	4.221	3.258	2.982	2.485	2.577	3.494	4.178	4.272	7.902	0.821	1.488	0.845	0.755	0.655	0.384	6.140
4979	chr14	121644394	121648713	+	0	NA	intron (NM_001347596, intron 9 of 52)	intron (NM_001347596, intron 9 of 52)	51864	NM_001347596	105445	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	3.183	1.132	0.453	2.694	3.404	1.654	2.227	2.256	1.488	1.687	0.621	0.419	1.338	5.086	nan	2.631	1.168	3.876	1.287	0.765	0.689	1.273	0.867	0.445	3.522
10863	chr4	144809441	144810892	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	-23583	NM_001126316	329993	Mm.297407	NM_001126316	ENSMUSG00000078504	Gm438	-	predicted gene 438	protein-coding	2.296	4.184	1.135	1.778	2.247	1.108	1.708	1.870	1.515	1.452	1.092	0.485	1.683	3.143	2.527	1.902	1.344	3.047	1.677	1.147	0.575	3.389	0.599	0.197	2.796
7781	chr19	42163530	42167626	+	0	NA	Intergenic	RSINE1|SINE|B4	-4989	NM_177319	319740	Mm.287359	NM_177319	ENSMUSG00000018820	Zfyve27	2210011N02Rik|9530077C24Rik|AI426636|AI593546|AI835681	zinc finger, FYVE domain containing 27	protein-coding	nan	6.793	2.363	5.732	5.399	3.827	5.688	nan	4.315	6.280	3.746	2.660	4.136	6.780	5.403	6.973	7.452	5.782	2.054	2.541	2.337	3.145	2.762	2.638	7.657
13513	chr7	108290546	108293618	+	0	NA	Intergenic	Lx|LINE|L1	-4958	NM_146498	258491	Mm.377533	NM_146498	ENSMUSG00000109884	Olfr490	MOR204-17	olfactory receptor 490	protein-coding	5.121	2.109	2.304	4.673	4.227	2.798	4.112	6.407	4.745	4.073	4.080	6.562	6.538	4.480	3.289	3.702	5.707	5.260	nan	2.113	1.855	1.400	2.275	1.828	2.140
9162	chr3	19527811	19530051	+	0	NA	intron (NM_025489, intron 1 of 4)	RLTR31D_MM|LTR|ERVK	-2316	NM_001163537	66326	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	7.421	11.299	4.556	7.188	3.074	1.209	7.050	5.568	4.459	6.188	3.854	2.845	6.548	8.205	7.361	7.610	4.883	7.396	5.207	3.563	2.090	6.376	3.938	2.947	9.316
3210	chr12	17364063	17365085	+	0	NA	intron (NM_001008421, intron 9 of 20)	B2_Mm2|SINE|B2	9182	NR_037226	100526470		NR_037226	ENSMUSG00000093037	Mir3066	mir-3066|mmu-mir-3066	microRNA 3066	ncRNA	5.018	0.712	0.155	0.796	0.240	0.179	3.806	4.014	1.419	1.690	0.572	1.842	5.076	3.639	3.441	4.540	7.382	3.353	0.886	0.167	0.287	0.397	0.253	0.441	3.382
7260	chr18	56777345	56780717	+	0	NA	intron (NM_177115, intron 4 of 4)	intron (NM_177115, intron 4 of 4)	71218	NM_010721	16906	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	6.277	nan	0.988	nan	3.832	3.139	2.098	3.652	5.017	5.098	0.634	0.711	nan	5.556	3.673	3.596	2.624	nan	nan	0.988	1.276	nan	1.088	1.007	4.658
1409	chr10	69386188	69394283	+	0	NA	Intergenic	B3|SINE|B2	-37323	NM_007659	12534	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	8.253	0.593	0.464	3.013	3.453	2.126	8.494	7.574	4.860	4.595	4.480	4.344	6.900	8.767	7.353	7.783	8.522	5.560	1.630	1.461	1.115	1.774	1.804	1.383	8.104
5895	chr16	21954961	21956770	+	0	NA	3' UTR (NM_153404, exon 9 of 9)	3' UTR (NM_153404, exon 9 of 9)	-8313	NR_037773	66664	Mm.46480	NM_025693	ENSMUSG00000022856	Tmem41a	2900010K02Rik|5730578N08Rik	transmembrane protein 41a	protein-coding	2.998	0.716	0.121	4.618	6.047	4.476	2.510	2.786	3.266	4.504	1.223	0.827	2.799	6.689	3.463	7.292	2.861	4.198	0.689	0.728	0.696	0.864	0.589	0.690	3.861
4417	chr13	112723446	112724572	+	0	NA	intron (NM_178746, intron 12 of 14)	intron (NM_178746, intron 12 of 14)	63243	NM_178746	268706	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	7.372	2.173	1.898	2.005	1.622	1.064	3.088	5.235	2.039	2.501	1.115	0.446	2.987	3.766	3.964	3.627	3.188	nan	1.374	1.370	0.925	nan	1.887	1.198	2.803
1716	chr10	110926955	110928091	+	0	NA	intron (NM_007792, intron 1 of 5)	intron (NM_007792, intron 1 of 5)	7347	NM_007792	13008	Mm.2020	NM_007792	ENSMUSG00000020186	Csrp2	AW551867|Crp2|SmLim	cysteine and glycine-rich protein 2	protein-coding	4.443	1.178	0.906	1.711	1.207	0.677	4.396	4.257	nan	1.541	1.955	1.412	4.303	3.680	3.770	4.850	3.434	4.472	0.751	0.464	0.091	0.465	2.582	0.800	2.819
9521	chr3	94827628	94834575	+	0	NA	Intergenic	IMPB_01|Satellite|Satellite	-6466	NM_001165948	229584	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	4.373	2.835	1.996	3.517	8.333	6.081	9.752	5.213	4.343	5.088	nan	2.869	7.322	8.868	6.215	6.083	6.193	5.630	1.052	1.199	1.300	1.062	1.388	1.245	6.351
7688	chr19	29596477	29597826	+	0	NA	intron (NM_001081319, intron 19 of 25)	intron (NM_001081319, intron 19 of 25)	51269	NM_001081213	226090	Mm.267131	NM_146098	ENSMUSG00000046324	Ermp1	D19Ertd410e|D19Wsu12e|Fxna|mKIAA1815	endoplasmic reticulum metallopeptidase 1	protein-coding	9.901	13.669	3.409	11.938	9.020	6.660	14.770	13.630	5.621	22.160	7.451	3.338	6.696	13.142	9.525	13.953	11.186	10.903	nan	1.941	4.238	4.699	nan	5.617	25.332
1663	chr10	96078708	96086492	+	0	NA	Intergenic	Intergenic	141937	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	9.134	14.655	5.260	9.278	4.444	3.126	5.775	7.702	7.689	8.882	nan	4.961	7.359	7.088	9.809	9.307	6.638	9.215	nan	2.254	2.056	nan	2.885	2.854	10.228
14386	chr8	84387362	84391572	+	0	NA	Intergenic	ID4|SINE|ID	-25897	NM_001252060	12286	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	5.006	0.987	0.545	2.162	3.115	1.226	2.981	4.455	nan	3.276	2.261	1.935	4.835	4.892	5.126	6.206	5.310	5.338	nan	0.687	0.234	0.613	0.372	0.180	3.380
11561	chr5	111676431	111677608	+	0	NA	Intergenic	Intergenic	84709	NR_045834	269683	Mm.136946	NM_207252	ENSMUSG00000085271	E130006D01Rik	Gm16018|Gm681|OTTMUSG00000029083	RIKEN cDNA E130006D01 gene	ncRNA	3.050	1.168	0.499	5.650	2.043	0.417	3.051	1.286	2.646	3.597	3.474	1.792	1.830	3.886	3.389	4.693	1.607	4.554	nan	0.771	0.557	0.819	0.556	0.225	4.621
10604	chr4	131629948	131634008	+	0	NA	Intergenic	Intergenic	206300	NM_011214	19273	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding	6.667	5.430	1.448	7.541	3.754	1.907	5.399	7.627	4.683	7.869	3.805	2.820	4.851	7.532	7.075	8.754	3.106	7.342	3.312	1.739	1.459	5.567	1.377	1.181	10.996
9175	chr3	22011783	22016618	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-62452	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	1.502	7.080	3.981	1.821	1.336	0.744	1.424	1.666	1.790	1.429	1.218	1.606	0.962	0.967	1.311	1.458	1.600	1.974	2.586	1.731	1.240	2.159	2.830	1.870	1.001
9739	chr3	121232690	121235992	+	0	NA	intron (NM_178936, intron 3 of 7)	intron (NM_178936, intron 3 of 7)	28975	NM_178936	99887	Mm.26088	NM_178936	ENSMUSG00000028132	Tmem56	4930577M16Rik|AU018104|AW109744|C730036B01Rik	transmembrane protein 56	protein-coding	7.238	1.100	0.423	5.197	4.120	2.151	10.486	8.737	6.578	8.829	5.105	2.214	11.496	11.053	8.283	nan	8.230	8.046	3.271	1.564	1.882	1.798	nan	3.255	11.262
13105	chr7	31560476	31565084	+	0	NA	Intergenic	ID_B1|SINE|B4	142974	NM_001198871	100043836	Mm.296883	NM_001198871	ENSMUSG00000094053	Scgb2b7	Abpbg7|Gm4684	secretoglobin, family 2B, member 7	protein-coding	1.515	0.813	0.346	2.373	2.723	1.589	2.419	5.169	1.585	2.218	2.004	0.858	1.604	4.182	3.571	2.915	4.304	2.130	1.526	0.713	0.775	1.519	1.495	1.192	8.328
5716	chr15	101971526	101976108	+	0	NA	Intergenic	Intergenic	-19530	NM_212487	332131	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	3.437	1.084	0.319	4.514	3.055	1.945	5.594	5.427	3.045	3.562	1.215	1.057	7.395	10.171	5.359	6.010	6.483	4.013	0.751	1.102	0.430	0.744	0.866	0.749	4.341
635	chr1	135057360	135061865	+	0	NA	intron (NM_001033409, intron 4 of 17)	MIR3|SINE|MIR	45664	NM_001033409	329252	Mm.279594	NM_001033409	ENSMUSG00000042793	Lgr6	A530037C04Rik|D830026M09	leucine-rich repeat-containing G protein-coupled receptor 6	protein-coding	6.638	1.779	0.530	nan	0.466	0.305	5.572	6.086	1.591	2.086	2.014	2.429	4.989	nan	4.268	7.539	5.777	3.583	3.221	1.153	1.088	4.055	3.915	3.143	6.853
9707	chr3	108713389	108714562	+	0	NA	intron (NM_029522, intron 1 of 14)	intron (NM_029522, intron 1 of 14)	8324	NM_029522	76123	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	14.854	26.193	12.250	15.240	8.977	5.907	15.891	11.077	8.364	17.344	12.603	8.412	12.473	16.670	12.760	16.064	11.181	12.437	8.578	4.315	5.371	9.320	5.195	5.655	23.861
1088	chr10	8608505	8612566	+	0	NA	Intergenic	L1_Mus1|LINE|L1	-91710	NM_177387	338362	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	3.607	0.497	0.782	2.092	7.128	4.268	3.105	3.362	3.248	3.008	2.542	1.734	2.865	4.455	2.685	3.406	3.055	4.463	0.659	0.906	0.731	0.674	0.934	0.800	2.751
5373	chr15	76979217	76985113	+	0	NA	Intergenic	RLTR19-int|LTR|ERVK	33621	NM_054099	117171	Mm.322968	NM_054099	ENSMUSG00000063236	1110038F14Rik	-	RIKEN cDNA 1110038F14 gene	protein-coding	9.437	nan	0.464	5.064	4.300	2.471	11.574	13.077	5.397	6.133	7.367	4.373	9.692	9.718	9.767	8.878	9.657	7.775	7.647	4.401	2.753	6.054	6.607	4.690	10.176
979	chr1	184389617	184392783	+	0	NA	Intergenic	RLTR11D|LTR|ERVK	166491	NR_040472	73590	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	6.496	1.716	0.927	4.669	3.381	0.895	4.447	5.332	3.056	3.705	1.672	2.125	3.920	4.894	5.692	11.037	9.125	5.511	3.261	1.375	0.465	1.747	2.826	1.333	6.557
15060	chr9	50202777	50205237	+	0	NA	Intergenic	Intergenic	29175	NR_131161	71873		NR_131161	ENSMUSG00000110916	2310003N18Rik	-	RIKEN cDNA 2310003N18 gene	ncRNA	6.154	0.545	0.317	3.136	2.880	1.622	6.422	5.925	5.715	8.126	6.087	2.879	6.287	8.005	6.572	5.392	3.013	5.326	1.905	1.055	0.336	nan	1.553	0.751	7.058
3950	chr13	34335722	34339895	+	0	NA	intron (NM_001033167, intron 1 of 10)	BGLII_Mur|LTR|ERVK	7374	NM_001033167	73102	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	3.480	nan	0.229	3.070	4.409	2.138	3.703	3.953	4.571	4.706	1.200	1.437	5.042	5.368	5.687	7.445	2.992	6.648	5.137	2.691	1.823	5.401	4.739	3.540	5.434
709	chr1	140028056	140036342	+	0	NA	Intergenic	L1_Mus4|LINE|L1	151212	NM_009888	12628	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	4.028	8.124	5.573	nan	2.190	1.258	1.050	1.278	2.300	2.094	1.846	0.803	2.659	nan	1.968	nan	3.297	2.698	0.692	1.784	1.441	0.736	0.482	0.357	nan
3603	chr12	88218826	88241438	+	0	NA	Intergenic	L1Md_T|LINE|L1	44365	NM_001013824	435337	Mm.441366	NM_001013824	ENSMUSG00000079029	Gm5662	EG435337	predicted gene 5662	protein-coding	14.438	7.230	2.715	9.838	5.729	3.449	11.599	9.142	6.979	11.383	6.970	4.308	12.419	14.002	10.962	nan	11.171	10.358	6.845	4.285	4.103	7.771	5.067	4.450	nan
12584	chr6	113183722	113189168	+	0	NA	intron (NM_177763, intron 2 of 3)	intron (NM_177763, intron 2 of 3)	8939	NM_177763	269788	Mm.37943	NM_177763	ENSMUSG00000042873	Lhfpl4	1190004M23Rik|AI604880|B230384L07|mKIAA4027	lipoma HMGIC fusion partner-like protein 4	protein-coding	2.547	9.826	6.320	2.295	1.295	0.598	2.534	3.096	1.435	2.126	1.547	0.906	2.086	nan	2.402	3.569	2.628	2.284	1.931	1.350	0.924	1.548	nan	0.821	3.033
310	chr1	74551456	74553943	+	0	NA	intron (NM_001081456, intron 6 of 16)	intron (NM_001081456, intron 6 of 16)	8339	NM_148937	18802	Mm.290731	NM_148937	ENSMUSG00000026173	Plcd4	4921507K24Rik	phospholipase C, delta 4	protein-coding	11.192	10.412	4.130	7.060	5.117	3.386	7.852	7.860	4.970	6.600	6.425	3.488	7.069	8.269	8.449	13.391	8.450	nan	6.175	nan	4.443	7.799	nan	5.625	10.665
192	chr1	55219818	55221853	+	0	NA	intron (NM_028713, intron 1 of 8)	intron (NM_028713, intron 1 of 8)	5947	NM_028713	74013	Mm.292050	NM_028713	ENSMUSG00000025978	Rftn2	2700010E02Rik|3222401M22Rik	raftlin family member 2	protein-coding	8.282	0.562	0.482	2.655	5.116	3.658	4.844	4.783	2.363	2.814	3.920	2.627	5.655	6.730	3.512	7.516	7.072	3.830	0.444	0.378	0.765	0.614	0.851	0.915	4.556
14699	chr8	123048563	123075809	+	0	NA	Intergenic	MYSERV6-int|LTR|ERVK	-3322	NM_153176	234847	Mm.292075	NM_153176	ENSMUSG00000000738	Spg7	AI452278|AU015315|Cmar|PGN	spastic paraplegia 7 homolog (human)	protein-coding	4.058	nan	1.162	nan	3.347	2.392	nan	6.837	2.356	4.422	1.661	1.188	4.348	5.608	nan	5.101	3.805	nan	nan	2.997	3.452	5.998	3.197	nan	6.970
9819	chr3	135101367	135103829	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-109965	NM_173762	229841	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	14.215	19.030	6.659	16.418	16.039	9.159	18.292	11.817	8.126	20.047	11.068	5.338	12.722	17.543	13.096	13.565	10.048	11.765	7.062	5.173	5.090	7.392	6.358	7.798	20.390
14099	chr8	26909441	26910770	+	0	NA	Intergenic	B3|SINE|B2	-67231	NM_001101502	353310	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	2.367	nan	0.211	0.626	2.022	0.737	1.557	4.130	1.063	0.619	2.594	0.870	1.940	3.421	2.118	1.375	2.921	1.609	0.914	1.763	2.809	nan	0.443	0.521	1.447
8458	chr2	92581816	92593414	+	0	NA	Intergenic	Intergenic	-4591	NR_106080	102466819		NR_106080	ENSMUSG00000099223	Mir7221	Gm27378|mmu-mir-7221	microRNA 7221	ncRNA	5.792	1.604	0.855	3.246	3.376	2.305	5.353	5.260	3.023	4.500	1.782	1.149	5.343	6.969	3.687	5.208	3.182	5.659	1.068	1.129	0.719	0.755	1.361	1.152	7.323
11732	chr5	125610616	125623176	+	0	NA	intron (NM_001190352, intron 1 of 8)	B4A|SINE|B4	84478	NM_001190352	208151	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding	4.211	1.927	0.928	4.751	2.451	1.391	4.668	4.483	3.196	nan	4.353	2.135	3.767	4.807	nan	5.406	nan	5.357	nan	2.398	2.217	5.225	nan	3.494	nan
11106	chr5	31150098	31154189	+	0	NA	intron (NM_001310527, intron 2 of 7)	intron (NM_001310527, intron 2 of 7)	2037	NM_001294324	17527	Mm.271923	NM_008622	ENSMUSG00000107283	Mpv17	Tg.Mpv17	MpV17 mitochondrial inner membrane protein	protein-coding	8.596	1.909	1.368	5.403	7.348	5.191	9.259	6.347	5.572	6.693	5.334	3.233	6.087	9.918	7.564	9.681	6.190	8.376	0.879	1.349	0.970	0.979	1.156	0.804	7.631
10381	chr4	109649058	109657821	+	0	NA	Intergenic	Intergenic	11933	NM_007671	12580	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)	protein-coding	0.212	1.692	0.567	0.318	0.153	0.099	0.169	nan	0.244	0.339	0.183	0.138	0.044	0.089	0.172	0.405	0.224	nan	2.185	1.690	1.819	5.519	1.100	1.410	0.604
11991	chr5	150438304	150439600	+	0	NA	intron (NM_172887, intron 45 of 60)	intron (NM_172887, intron 45 of 60)	63267	NR_024513	194292	Mm.300184	NR_024513		Gm5	Gm1812	predicted gene 5	ncRNA	4.460	10.014	2.540	nan	1.983	1.678	6.642	5.046	nan	4.514	3.480	3.255	4.417	4.038	7.959	8.597	6.062	5.141	4.923	2.158	2.849	4.634	3.304	3.618	8.711
15261	chr9	70081885	70094639	+	0	NA	Intergenic	B3|SINE|B2	-50174	NM_028087	72077	Mm.195555	NM_028087	ENSMUSG00000032226	Gcnt3	2010013H22Rik|2210021I22Rik|2210401J11Rik	glucosaminyl (N-acetyl) transferase 3, mucin type	protein-coding	5.559	9.156	5.121	3.696	2.235	1.197	4.478	3.972	4.353	4.915	2.468	2.292	5.545	4.929	nan	6.900	3.912	6.021	nan	1.297	1.087	1.506	1.652	1.072	7.050
14904	chr9	21523000	21525415	+	0	NA	Intergenic	B2_Mm1t|SINE|B2	-1970	NM_206536	382062	Mm.325205	NM_206536	ENSMUSG00000057191	AB124611	Gm1706	cDNA sequence AB124611	protein-coding	1.983	1.180	1.404	1.292	1.840	1.404	0.848	1.835	1.445	1.689	1.293	1.931	1.192	1.217	0.934	1.237	1.158	1.293	4.210	5.041	7.145	3.789	4.763	5.164	1.055
4320	chr13	99357018	99367501	+	0	NA	intron (NM_173757, intron 2 of 10)	B2_Mm2|SINE|B2	17473	NM_173757	218506	Mm.30208	NM_173757	ENSMUSG00000041632	Mrps27	2610028H14Rik	mitochondrial ribosomal protein S27	protein-coding	0.712	0.748	0.348	0.692	0.445	0.251	0.851	1.106	0.733	0.610	0.648	0.672	0.613	0.624	1.216	0.997	nan	nan	5.366	2.759	2.262	4.572	5.200	4.128	1.159
4262	chr13	81073965	81081907	+	0	NA	intron (NR_015587, intron 1 of 1)	MLT1F1|LTR|ERVL-MaLR	113862	NR_015587	319983	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	4.656	1.447	0.700	4.257	4.645	2.928	4.085	6.126	4.822	4.936	5.498	4.772	4.825	5.924	4.560	nan	2.657	4.971	1.534	1.339	1.266	1.246	1.565	1.295	3.291
3764	chr12	113906004	113914070	+	0	NA	Intergenic	L1_Mus2|LINE|L1	366129	NM_174885	238406	Mm.188683	NM_174885	ENSMUSG00000043945	Adam6a	Adam6|tMDCIV	a disintegrin and metallopeptidase domain 6A	protein-coding	nan	12.620	3.778	6.600	2.508	1.609	4.736	5.024	3.083	7.296	4.051	1.762	5.369	5.801	5.356	6.618	4.569	4.624	2.651	1.420	1.819	3.637	1.651	1.980	11.916
1707	chr10	107879177	107885822	+	0	NA	intron (NM_001177567, intron 10 of 57)	intron (NM_001177567, intron 10 of 57)	29635	NM_001177567	628870	Mm.336090	NM_001177567	ENSMUSG00000091455	Otogl	EG628870|Gm6924	otogelin-like	protein-coding	7.304	2.147	0.812	3.866	3.930	2.323	5.989	4.254	4.441	4.873	3.408	3.331	3.937	4.153	6.486	6.284	5.340	6.435	0.900	0.956	0.517	0.971	0.758	0.648	9.511
7753	chr19	38127636	38129853	+	0	NA	Intergenic	Intergenic	-3423	NM_001159487	19662	Mm.2605	NM_011255	ENSMUSG00000024990	Rbp4	Rbp-4	retinol binding protein 4, plasma	protein-coding	nan	5.642	2.931	2.330	2.256	0.843	3.261	5.193	1.867	2.776	3.311	2.444	2.037	3.515	2.865	4.673	3.689	2.607	2.346	2.092	0.982	3.585	2.698	1.868	4.681
3103	chr11	120089910	120106686	+	0	NA	promoter-TSS (NM_001110242)	promoter-TSS (NM_001110242)	433	NM_183137	78777	Mm.23672	NM_183137	ENSMUSG00000025377	Tepsin	2410002I01Rik|Enthd2	TEPSIN, adaptor related protein complex 4 accessory protein	protein-coding	5.781	nan	0.867	9.312	3.242	2.159	nan	nan	6.177	nan	4.931	2.981	6.107	8.760	7.242	9.195	5.929	9.894	4.791	nan	2.760	6.658	3.271	4.168	11.321
9704	chr3	108642470	108644426	+	0	NA	intron (NM_181400, intron 14 of 14)	intron (NM_181400, intron 14 of 14)	-10465	NM_145543	229725	Mm.214545	NM_145543	ENSMUSG00000027884	Clcc1	Mclc	chloride channel CLIC-like 1	protein-coding	8.451	7.338	3.153	6.963	4.183	1.538	6.080	5.644	3.616	6.211	4.516	2.920	5.428	8.490	nan	6.971	6.045	6.061	3.492	2.766	1.461	3.128	3.056	1.468	8.304
2044	chr11	29145898	29147976	+	0	NA	intron (NM_027869, intron 15 of 27)	B3|SINE|B2	16186	NM_027869	71701	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	3.307	5.083	1.995	4.521	2.226	1.077	2.547	2.380	2.803	3.247	1.848	1.361	1.775	3.604	3.789	3.881	nan	4.163	3.916	2.065	1.254	4.350	2.010	1.967	3.920
12441	chr6	90505382	90506796	+	0	NA	Intergenic	Intergenic	43463	NM_023184	66277	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	1.185	0.673	0.564	nan	2.137	1.779	2.345	1.420	1.298	1.230	0.540	0.788	2.017	3.701	1.259	2.559	2.061	nan	nan	1.009	1.505	0.860	1.435	1.774	1.294
9513	chr3	94712208	94723865	+	0	NA	Intergenic	Intergenic	24463	NM_019414	20342	Mm.225405	NM_019414	ENSMUSG00000068877	Selenbp2	AP56|Lpsb2	selenium binding protein 2	protein-coding	6.902	0.606	0.489	6.046	9.921	8.969	8.973	8.026	7.252	8.747	nan	3.014	9.219	11.685	6.006	nan	6.205	9.163	1.115	1.014	1.151	1.323	0.981	1.146	6.821
8038	chr2	26472175	26473757	+	0	NA	exon (NM_008714, exon 18 of 34)	exon (NM_008714, exon 18 of 34)	-2847	NR_105962	102465602		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	3.464	0.391	0.527	1.525	1.782	0.727	1.772	1.699	nan	3.486	0.635	0.733	2.006	4.516	1.786	2.337	4.319	2.368	0.509	0.766	0.535	0.431	0.525	0.559	5.269
4553	chr14	26513009	26514796	+	0	NA	intron (NM_001310445, intron 1 of 22)	intron (NM_001310445, intron 1 of 22)	20722	NM_032008	83997	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	3.846	8.226	2.182	5.076	1.454	0.607	3.673	6.498	3.058	4.599	2.452	3.321	3.580	4.917	5.852	6.636	2.678	nan	5.128	2.223	2.788	6.230	3.601	3.961	8.828
10457	chr4	119949629	119951165	+	0	NA	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	135719	NM_010657	16656	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	1.004	1.594	0.332	1.744	0.539	0.321	0.691	1.046	0.875	1.358	0.244	0.259	0.968	1.231	0.951	nan	1.398	1.336	7.207	5.063	3.296	8.994	5.205	4.849	3.116
4231	chr13	65379203	65380780	+	0	NA	Intergenic	Intergenic	101137	NM_178364	170936	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	6.375	9.743	2.621	7.174	3.535	1.191	5.859	3.143	3.274	3.986	2.715	1.717	4.937	6.290	7.113	8.057	3.453	7.811	3.433	3.993	1.087	4.470	2.971	1.880	9.863
1437	chr10	75241714	75246044	+	0	NA	intron (NM_153406, intron 3 of 15)	intron (NM_153406, intron 3 of 15)	31489	NM_001145826	74392	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	6.251	2.957	1.450	nan	2.713	2.272	4.219	6.689	3.000	4.171	2.685	1.921	4.872	6.474	nan	5.925	5.226	4.314	nan	1.009	1.116	0.990	1.227	0.652	7.802
14151	chr8	36268038	36270832	+	0	NA	Intergenic	Intergenic	-19919	NM_001081150	244421	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	4.737	0.620	0.252	0.827	1.331	0.757	3.718	7.615	1.855	2.674	2.455	1.534	6.524	6.530	6.384	8.263	6.983	3.299	6.008	4.677	2.382	8.543	6.557	3.995	5.121
6189	chr16	90623134	90627022	+	0	NA	Intergenic	Intergenic	102293	NM_025642	66578	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	9.118	nan	0.407	3.493	1.190	0.616	5.846	6.717	2.860	2.797	1.263	2.073	7.036	3.574	5.691	9.679	6.157	5.665	2.387	1.150	0.819	nan	0.895	0.833	7.143
2517	chr11	78835954	78837705	+	0	NA	intron (NM_001076681, intron 2 of 3)	L1MC4|LINE|L1	10234	NM_001076681	66274	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	2.460	4.895	1.299	5.516	1.778	0.526	nan	1.562	1.837	2.367	1.178	0.464	0.832	1.620	2.110	2.327	0.986	2.630	0.880	0.620	nan	1.163	0.427	0.331	2.291
7547	chr19	10004248	10007619	+	0	NA	intron (NM_001347429, intron 1 of 12)	B1F|SINE|Alu	4264	NM_001347429	74760	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	5.137	3.901	1.779	3.115	4.501	3.137	1.667	4.238	nan	3.012	5.365	1.565	2.200	3.800	2.420	nan	2.010	3.395	0.684	1.452	0.926	0.698	0.750	0.534	2.689
14766	chr8	126754057	126756822	+	0	NA	Intergenic	Intergenic	-162003	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	7.482	5.878	1.300	7.188	3.665	2.349	7.142	nan	4.277	9.817	4.006	2.777	6.801	8.106	7.582	9.034	6.710	nan	nan	2.403	1.709	5.130	2.490	nan	14.242
14507	chr8	97903692	97905704	+	0	NA	Intergenic	Lx3A|LINE|L1	-1107189	NR_110579	100873092	Mm.414599	NR_110579	ENSMUSG00000089819	Gm15679	OTTMUSG00000025218	predicted gene 15679	ncRNA	4.815	0.890	0.769	3.641	4.924	2.972	2.508	4.367	4.315	4.103	2.551	3.293	5.635	3.820	3.503	5.314	7.733	5.737	1.407	1.861	2.058	1.693	1.857	1.748	3.862
12948	chr7	17504893	17510371	+	0	NA	Intergenic	Intergenic	-164681	NR_002857	232919	Mm.153893	NR_002857	ENSMUSG00000108558	Psg-ps1	AV036018|Cea-6|Cea6	pregnancy specific glycoprotein pseudogene 1	pseudo	5.260	6.729	3.097	5.129	3.188	1.438	4.980	6.743	2.451	5.447	3.622	2.221	3.423	4.824	4.351	4.890	3.874	4.512	4.814	5.331	3.521	4.794	6.083	4.489	6.678
10944	chr4	150530833	150537326	+	0	NA	intron (NM_001085492, intron 10 of 22)	B1_Mus2|SINE|Alu	118095	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.203	nan	0.255	0.465	0.103	0.038	0.246	0.237	0.203	0.247	0.175	0.077	0.094	0.266	0.181	0.428	0.230	0.414	2.477	0.542	0.396	5.117	1.045	0.675	0.630
6108	chr16	48375742	48379316	+	0	NA	Intergenic	L1MB8|LINE|L1	34887	NR_015373	433023	Mm.483302	NR_015373	ENSMUSG00000110573	Gm5485	EG433023	predicted gene 5485	ncRNA	6.854	0.330	0.363	2.689	5.393	3.310	4.157	5.582	5.312	6.313	0.630	0.914	7.184	6.614	4.568	6.114	4.226	5.901	0.500	0.488	0.274	0.311	0.461	0.425	4.663
1740	chr10	111432610	111434788	+	0	NA	Intergenic	ORR1D1|LTR|ERVL-MaLR	-39493	NM_015781	53605	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	13.332	11.156	8.107	3.921	5.020	2.631	6.106	4.086	4.966	4.298	7.736	5.078	5.646	5.963	5.432	5.758	4.495	4.178	0.883	2.426	2.137	0.502	0.471	0.886	6.449
1600	chr10	92627886	92631517	+	0	NA	Intergenic	Intergenic	92717	NM_008682	17997	Mm.2998	NM_008682	ENSMUSG00000019988	Nedd1	-	neural precursor cell expressed, developmentally down-regulated gene 1	protein-coding	5.681	7.168	3.375	5.850	4.561	2.264	2.300	1.783	2.959	3.076	3.867	2.073	2.662	3.334	3.142	3.270	3.142	4.841	2.302	3.330	1.519	nan	nan	0.510	4.372
15095	chr9	55951082	55957445	+	0	NA	Intergenic	B3|SINE|B2	-16148	NM_001081341	244891	Mm.86588	NM_175536	ENSMUSG00000034007	Scaper	C430017I08|D530014O03Rik|Zfp291	S phase cyclin A-associated protein in the ER	protein-coding	3.249	2.576	1.056	2.159	1.720	1.118	2.923	2.579	2.855	1.960	9.536	3.419	2.081	3.736	2.683	1.767	1.008	1.478	0.696	1.162	0.864	0.685	0.642	0.375	1.790
9882	chr3	152001988	152015569	+	0	NA	Intergenic	MYSERV6-int|LTR|ERVK	157122	NM_016867	54120	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	5.485	2.700	1.839	4.145	5.564	4.629	4.528	4.201	5.038	7.495	1.590	1.434	5.629	6.406	3.926	5.545	5.809	5.835	2.005	1.342	1.925	1.615	1.600	2.153	6.734
11704	chr5	124143725	124148142	+	0	NA	intron (NM_011256, intron 3 of 24)	intron (NM_011256, intron 3 of 24)	29825	NM_144509	65105	Mm.29430	NM_144509	ENSMUSG00000029404	Arl6ip4	AA408210|AA408365|Aip-4|Srp25	ADP-ribosylation factor-like 6 interacting protein 4	protein-coding	3.602	0.965	0.702	3.852	5.572	4.682	4.672	4.427	4.193	3.584	3.704	2.877	3.516	5.152	4.891	5.169	4.071	nan	nan	1.217	1.971	1.712	nan	1.931	2.712
9584	chr3	97853717	97855239	+	0	NA	intron (NM_001039376, intron 1 of 46)	intron (NM_001039376, intron 1 of 46)	34229	NM_001289702	83679	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	2.436	1.120	0.905	2.322	2.207	1.580	2.650	2.240	2.534	2.844	2.425	0.899	3.479	3.699	3.214	4.212	4.778	3.357	0.920	0.929	0.980	0.313	1.153	1.005	3.190
603	chr1	133228645	133230719	+	0	NA	Intergenic	Intergenic	-16415	NM_001160268	240753	Mm.253559	NM_182930	ENSMUSG00000041757	Plekha6	9530028L01Rik|AU042621|Pepp3	pleckstrin homology domain containing, family A member 6	protein-coding	3.437	1.197	0.375	nan	1.333	0.288	1.917	1.265	2.601	1.794	0.948	0.246	3.610	2.006	3.866	5.193	3.584	4.498	0.884	0.522	0.118	0.663	0.421	0.162	nan
8250	chr2	54065918	54070085	+	0	NA	Intergenic	L1Md_T|LINE|L1	17551	NM_023396	67874	Mm.27086	NM_023396	ENSMUSG00000075334	Rprm	2410012A13Rik|Reprimo	reprimo, TP53 dependent G2 arrest mediator candidate	protein-coding	4.621	0.476	0.217	2.431	1.256	0.573	3.434	4.082	2.512	3.064	0.580	0.540	5.725	3.965	2.725	4.150	6.583	4.892	0.411	0.643	0.216	0.279	0.366	0.236	2.592
8009	chr2	24830095	24833173	+	0	NA	intron (NM_001012518, intron 15 of 26)	intron (NM_001012518, intron 15 of 26)	-68482	NM_007579	12287	Mm.4424	NM_007579	ENSMUSG00000004113	Cacna1b	AW050276|AW060892|AW822256|BIII|Cav2.2|Cchn1a|alpha(1B)	calcium channel, voltage-dependent, N type, alpha 1B subunit	protein-coding	9.447	8.611	4.013	6.964	5.336	3.347	6.279	7.690	nan	5.884	4.617	2.180	5.476	7.725	6.538	9.271	6.938	5.706	2.971	4.230	3.160	3.346	3.919	2.393	11.275
5666	chr15	100138408	100143447	+	0	NA	intron (NM_001159361, intron 3 of 37)	intron (NM_001159361, intron 3 of 37)	-13469	NM_172819	239667	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	5.106	1.278	0.800	3.708	4.239	3.019	4.611	3.911	4.206	3.355	1.304	1.692	6.348	4.442	3.967	nan	5.618	6.254	0.912	1.443	1.683	2.671	1.453	1.216	4.025
11197	chr5	38870952	38871949	+	0	NA	intron (NM_013748, intron 1 of 18)	intron (NM_013748, intron 1 of 18)	5243	NM_013748	27278	Mm.440845	NM_013748	ENSMUSG00000039315	Clnk	MIST	cytokine-dependent hematopoietic cell linker	protein-coding	5.411	7.830	5.177	6.092	3.731	1.906	2.985	3.937	3.817	3.226	5.143	2.002	2.002	3.393	3.871	5.260	1.604	4.278	5.077	3.304	3.817	6.073	5.930	4.155	5.658
90	chr1	36124564	36127682	+	0	NA	Intergenic	B1_Mur3|SINE|Alu	18190	NR_105862	102465540		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	8.692	11.043	3.216	6.238	2.873	1.327	7.817	6.259	3.604	8.515	4.984	3.045	6.470	6.832	7.914	11.197	5.323	8.112	5.442	1.962	2.234	7.093	3.446	3.874	12.943
15252	chr9	69313086	69322551	+	0	NA	intron (NM_001289916, intron 1 of 9)	intron (NM_001289916, intron 1 of 9)	27977	NM_001289916	19883	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	3.054	1.148	0.539	2.660	2.192	1.309	3.761	3.116	2.908	2.781	4.689	2.541	2.210	4.101	nan	3.244	1.619	3.199	nan	1.118	0.685	0.963	1.174	0.865	2.918
4712	chr14	57751492	57754627	+	0	NA	Intergenic	Intergenic	-6936	NM_015771	50523	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	2.807	nan	0.107	2.014	0.978	0.504	1.185	2.838	1.594	3.244	0.524	0.516	2.586	6.261	4.291	3.974	2.220	2.592	1.016	0.166	0.092	0.309	0.256	0.360	6.290
3514	chr12	81308652	81334367	+	0	NA	intron (NM_001167920, intron 1 of 6)	MIRb|SINE|MIR	11671	NM_001167920	110893	Mm.443748	NM_080440	ENSMUSG00000079055	Slc8a3	AW742262|Ncx3	solute carrier family 8 (sodium/calcium exchanger), member 3	protein-coding	8.085	1.524	0.648	5.695	5.377	3.101	5.247	6.104	5.785	6.405	6.177	3.062	7.120	9.531	6.785	nan	4.935	6.725	4.756	2.932	2.622	5.199	4.382	3.424	10.811
8722	chr2	139891587	139893166	+	0	NA	intron (NM_001159641, intron 10 of 12)	intron (NM_001159641, intron 10 of 12)	174429	NM_001159640	75812	Mm.293449	NM_175225	ENSMUSG00000039033	Tasp1	4930485D02Rik|AW986064	taspase, threonine aspartase 1	protein-coding	6.204	8.095	1.600	7.719	3.236	1.328	3.792	7.841	3.815	7.238	3.548	2.214	5.649	7.022	6.986	9.674	7.803	7.533	4.416	2.636	1.785	4.316	3.645	2.765	9.265
565	chr1	129553553	129554610	+	0	NA	intron (NM_172485, intron 2 of 27)	Lx8|LINE|L1	280777	NM_172485	210417	Mm.380518	NM_172485	ENSMUSG00000042581	Thsd7b	1700074E13Rik|B930082A18|D130067I03Rik	thrombospondin, type I, domain containing 7B	protein-coding	1.045	nan	1.055	0.209	2.154	1.702	0.707	0.602	0.648	0.976	0.421	0.345	0.451	1.065	0.440	0.454	1.138	nan	1.942	3.052	4.810	2.106	4.392	4.497	0.559
9717	chr3	115412455	115418828	+	0	NA	Intergenic	RMER5|LTR|ERV1	299414	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	4.824	7.002	2.323	7.719	2.173	1.240	2.299	1.341	3.018	nan	1.403	0.915	1.445	2.592	2.270	nan	2.223	4.388	1.029	1.724	1.042	0.984	nan	1.194	nan
3247	chr12	26475664	26481125	+	0	NA	3' UTR (NM_020557, exon 5 of 5)	3' UTR (NM_020557, exon 5 of 5)	9179	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	0.878	0.648	0.269	1.438	1.084	0.346	1.307	1.979	0.977	1.146	1.361	0.419	1.437	2.099	1.285	1.326	0.964	1.201	2.607	1.308	1.002	3.504	2.119	1.589	2.109
850	chr1	168308361	168310947	+	0	NA	intron (NM_008783, intron 2 of 7)	intron (NM_008783, intron 2 of 7)	122515	NM_001291508	18514	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	8.805	10.442	3.246	nan	4.497	3.292	6.950	5.680	nan	9.833	6.045	3.589	nan	7.110	nan	12.325	5.601	8.071	4.213	3.004	2.991	nan	nan	3.586	13.258
11174	chr5	36079555	36087103	+	0	NA	intron (NM_030889, intron 3 of 26)	intron (NM_030889, intron 3 of 26)	-120692	NM_175249	76943	Mm.44242	NM_175249	ENSMUSG00000043430	Psapl1	2310020A21Rik	prosaposin-like 1	protein-coding	5.000	0.975	0.392	4.977	3.203	1.827	5.425	6.369	3.530	4.121	2.187	1.804	6.240	9.030	nan	8.495	4.522	6.476	1.158	0.955	0.972	1.506	0.865	0.658	7.663
10688	chr4	134485857	134487859	+	0	NA	Intergenic	RLTR49|LTR|ERVK	-9903	NM_001285845	71904	Mm.142343	NM_027995	ENSMUSG00000037348	Paqr7	2310021M12Rik|AV001994|BB007237|Mpra|PGLP|mPR	progestin and adipoQ receptor family member VII	protein-coding	6.984	8.973	4.242	8.897	7.181	4.842	5.152	7.589	5.288	7.204	4.817	3.049	5.108	8.353	6.804	8.607	4.743	7.431	5.344	3.746	4.166	7.188	4.562	4.292	8.854
13264	chr7	73006563	73008896	+	0	NA	Intergenic	L1Md_T|LINE|L1	94339	NR_046024	625243	Mm.261798	NR_046024	ENSMUSG00000108383	Gm6567	-	predicted gene 6567	ncRNA	2.933	0.530	0.169	nan	0.863	0.422	5.699	4.969	3.492	9.220	3.033	1.811	3.928	4.466	6.741	5.451	1.748	4.522	1.745	0.518	1.208	4.777	0.840	2.247	11.711
15086	chr9	53191515	53194886	+	0	NA	intron (NM_029936, intron 13 of 17)	B1_Mur1|SINE|Alu	54912	NM_029936	77591	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	9.298	3.151	0.949	7.997	3.238	1.929	6.163	7.898	6.102	11.230	6.635	4.840	7.304	8.786	7.986	8.607	5.819	9.219	3.043	2.705	2.096	4.032	2.741	2.475	11.546
14370	chr8	81873864	81875492	+	0	NA	intron (NM_001024617, intron 8 of 24)	intron (NM_001024617, intron 8 of 24)	527908	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	4.684	2.012	0.661	3.790	2.498	0.681	3.732	4.243	3.617	2.699	7.204	4.662	3.650	3.339	2.963	3.342	2.275	3.636	6.318	4.518	1.375	9.649	2.775	2.892	2.979
4997	chr14	122664750	122668805	+	0	NA	intron (NM_144844, intron 11 of 23)	intron (NM_144844, intron 11 of 23)	132449	NM_144844	110821	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0.310	0.559	0.704	0.355	0.297	0.047	0.517	0.621	0.330	0.242	0.280	0.373	0.092	0.300	nan	0.532	0.426	0.385	2.468	1.571	2.085	1.726	7.977	7.391	0.388
4683	chr14	55620801	55625112	+	0	NA	intron (NM_020002, intron 11 of 19)	intron (NM_020002, intron 11 of 19)	4790	NM_020002	56739	Mm.23149	NM_020002	ENSMUSG00000002324	Rec8	Rec8L1|mrec	REC8 meiotic recombination protein	protein-coding	3.470	nan	0.548	2.882	4.187	2.288	2.379	3.669	2.699	3.783	0.559	0.522	3.919	10.679	5.110	7.132	4.507	4.498	1.431	1.341	1.168	1.124	1.689	1.552	9.506
12522	chr6	98898553	98901352	+	0	NA	Intergenic	Intergenic	128346	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	4.603	2.033	1.271	4.725	2.378	1.333	4.434	3.666	3.199	3.288	7.176	3.059	3.773	4.299	4.665	5.583	4.992	4.597	2.322	1.994	0.915	3.389	1.271	0.958	4.528
8554	chr2	118358381	118359749	+	0	NA	intron (NM_201367, intron 1 of 2)	ID_B1|SINE|B4	14354	NM_201367	381413	Mm.70979	NM_201367	ENSMUSG00000040133	Gpr176	Gm1012	G protein-coupled receptor 176	protein-coding	4.661	2.635	0.944	4.757	1.800	0.911	2.973	5.207	2.634	3.338	1.051	0.626	2.206	3.450	2.629	4.106	2.534	3.234	3.185	2.007	1.818	2.747	2.282	2.804	4.975
10073	chr4	48250992	48258811	+	0	NA	intron (NM_029572, intron 1 of 11)	intron (NM_029572, intron 1 of 11)	24688	NM_029572	76299	Mm.317701	NM_029572	ENSMUSG00000028343	Erp44	1110001E24Rik|AI849526|AL033348|Txndc4	endoplasmic reticulum protein 44	protein-coding	1.280	6.616	3.772	1.437	0.614	0.282	1.024	1.431	2.227	1.944	0.762	1.092	2.010	2.058	1.204	1.908	1.594	nan	0.994	0.640	0.157	nan	0.388	0.208	0.754
13027	chr7	26472038	26474861	+	0	NA	intron (NM_172896, intron 10 of 10)	ORR1D2|LTR|ERVL-MaLR	38336	NM_172896	243880	Mm.322356	NM_172896	ENSMUSG00000040601	Nlrp4a	E330021B02|E330028A19Rik|NALP4|Nalp-eta|Nalp-ita|Nalp4a	NLR family, pyrin domain containing 4A	protein-coding	9.853	21.915	7.542	13.439	4.939	2.414	10.887	10.016	5.381	11.531	8.157	5.393	7.531	11.313	11.300	12.556	7.564	9.980	5.091	4.752	3.422	7.874	5.272	4.312	17.744
10614	chr4	131908582	131910937	+	0	NA	intron (NR_102393, intron 3 of 4)	intron (NR_102393, intron 3 of 4)	10270	NR_102394	545681	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	OTTMUSG00000009742	predicted gene 12992	ncRNA	9.907	11.558	5.761	10.760	10.741	9.707	7.974	8.584	7.175	8.978	8.687	4.785	6.393	10.376	7.961	8.484	6.400	8.995	6.451	6.986	6.504	6.937	7.179	7.541	10.019
13091	chr7	30765336	30770845	+	0	NA	intron (NM_172899, intron 8 of 18)	B1F|SINE|Alu	4334	NM_001166174	73712	Mm.30138	NM_028618	ENSMUSG00000060962	Dmkn	1110014F24Rik|AW561900|C130074A08|SK30|SK89|cI-36	dermokine	protein-coding	9.054	3.421	1.504	5.611	5.352	2.774	8.958	10.145	5.379	6.251	3.396	2.248	9.950	9.161	7.602	8.180	8.135	8.394	2.796	2.495	2.428	2.113	3.158	3.158	9.910
11629	chr5	117763703	117771074	+	0	NA	3' UTR (NM_001312914, exon 20 of 20)	3' UTR (NM_001312914, exon 20 of 20)	-99451	NM_008712	18125	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	4.002	2.441	0.708	4.544	2.426	1.397	5.142	3.795	2.927	4.565	3.127	2.737	3.502	4.319	4.770	4.649	3.902	4.623	nan	nan	3.221	6.505	nan	4.761	5.751
7986	chr2	17975961	17981497	+	0	NA	Intergenic	RLTR13D3|LTR|ERVK	18229	NM_026627	68231	Mm.23887	NM_026627	ENSMUSG00000062651	H2afb1	1700113O17Rik|H2A.Bbd|H2al2|TSEG-1|Tseg1	H2A histone family, member B1	protein-coding	7.917	8.313	3.557	8.411	4.921	2.868	10.469	10.817	6.416	10.827	9.011	4.710	9.534	11.768	9.503	10.472	12.212	9.161	5.826	3.677	3.222	6.111	4.287	3.690	9.483
14950	chr9	32523181	32539539	+	0	NA	intron (NM_008026, intron 1 of 8)	MER121|DNA|TcMar?	10092	NM_008026	14247	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	3.027	10.479	4.242	3.349	1.469	0.703	1.646	1.486	2.624	2.508	1.376	2.319	1.527	1.601	2.169	nan	1.368	3.455	1.585	1.542	0.842	1.907	1.059	0.580	2.124
13877	chr7	148136179	148143298	+	0	NA	Intergenic	Intergenic	2824903	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	5.929	nan	1.110	6.385	2.193	1.027	3.378	5.660	nan	3.777	10.429	3.012	3.634	4.421	4.001	4.894	3.732	3.845	2.930	2.235	1.612	2.962	nan	2.279	5.802
15567	chr9	118551029	118564741	+	0	NA	exon (NM_018748, exon 15 of 24)	exon (NM_018748, exon 15 of 24)	-48824	NM_133721	104099	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	5.971	1.527	0.542	4.787	3.421	1.949	6.835	6.086	5.611	7.808	1.886	0.839	6.595	8.329	7.456	8.749	4.684	9.072	2.141	0.889	0.747	1.047	nan	1.426	11.360
11079	chr5	24565736	24578085	+	0	NA	intron (NM_013853, intron 5 of 13)	intron (NM_013853, intron 5 of 13)	5557	NM_013853	27407	Mm.21629	NM_013853	ENSMUSG00000028953	Abcf2	0710005O05Rik|Drr3|E430001O06	ATP-binding cassette, sub-family F (GCN20), member 2	protein-coding	6.457	1.182	0.401	5.485	3.329	1.803	7.330	7.148	5.669	8.495	0.677	1.086	8.549	9.797	7.977	8.289	6.046	8.128	2.863	1.343	0.824	3.520	3.908	2.821	8.291
11138	chr5	32983561	32986704	+	0	NA	intron (NM_001025426, intron 41 of 42)	intron (NM_001025426, intron 41 of 42)	-33684	NM_011738	22629	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	5.372	0.608	0.490	2.339	4.970	3.013	4.395	3.398	3.605	3.611	0.651	0.467	3.700	4.518	3.873	3.924	4.283	4.776	0.931	1.027	0.939	0.647	0.940	1.125	3.662
4777	chr14	65950172	65951535	+	0	NA	intron (NM_172604, intron 1 of 5)	intron (NM_172604, intron 1 of 5)	2891	NM_172604	219151	Mm.344095	NM_172604	ENSMUSG00000034463	Scara3	APC7|C130058N24Rik|CSR|CSR1|MSLR1|MSRL1	scavenger receptor class A, member 3	protein-coding	7.177	2.340	0.336	7.447	4.226	2.530	7.868	12.055	5.103	9.874	7.402	3.156	6.375	8.780	8.031	10.928	4.293	6.795	4.269	nan	1.719	4.008	3.218	4.619	17.253
11	chr1	9534958	9538965	+	0	NA	Intergenic	RMER1A|Other|Other	-8447	NM_021511	59014	Mm.29061	NM_021511	ENSMUSG00000061024	Rrs1	5730466A07Rik|AA415037|D1Ertd701e|Rrr	ribosome biogenesis regulator 1	protein-coding	5.327	4.467	2.008	4.436	1.928	0.938	2.703	4.989	2.217	2.894	2.190	1.679	2.811	2.472	3.374	5.407	3.645	3.920	1.498	1.496	0.813	2.031	1.439	1.094	5.340
10826	chr4	141273441	141282382	+	0	NA	Intergenic	Intergenic	-23310	NM_010139	13836	Mm.2581	NM_010139	ENSMUSG00000006445	Epha2	AW545284|Eck|Myk2|Sek-2|Sek2	Eph receptor A2	protein-coding	nan	4.185	2.123	6.229	4.749	3.540	5.003	5.792	4.562	6.523	3.445	2.993	5.432	6.274	5.379	6.316	4.253	5.482	8.018	4.393	4.451	8.359	7.806	8.555	6.507
14622	chr8	114507449	114509923	+	0	NA	intron (NM_019573, intron 5 of 8)	intron (NM_019573, intron 5 of 8)	69034	NM_019573	80707	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	4.205	0.840	0.256	1.478	0.942	0.399	3.241	1.378	1.644	2.229	0.471	0.446	5.561	5.260	3.492	nan	5.387	4.589	0.604	1.091	0.842	0.646	0.543	0.246	6.239
4117	chr13	51193679	51198000	+	0	NA	Intergenic	L1MEc|LINE|L1	7227	NR_132443	667728		NR_132443		Hist1h2al	EG667728	histone cluster 1, H2al	pseudo	6.277	7.790	3.035	6.706	3.803	2.658	5.707	6.517	5.106	8.566	8.850	4.370	5.029	6.274	5.926	7.904	4.201	6.678	3.901	nan	2.715	3.814	2.694	4.393	10.166
12098	chr6	29193736	29199679	+	0	NA	Intergenic	Intergenic	15590	NM_011829	23917	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine 5'-phosphate dehydrogenase 1	protein-coding	1.612	2.175	1.018	2.514	4.224	2.542	2.078	8.421	2.809	1.956	2.076	2.843	2.956	3.975	3.410	nan	1.334	nan	nan	1.097	1.028	1.133	1.646	1.158	1.337
14559	chr8	108822641	108827390	+	0	NA	intron (NM_007496, intron 3 of 9)	intron (NM_007496, intron 3 of 9)	110371	NM_007496	11906	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.727	0.695	0.710	0.625	0.586	0.582	0.498	1.438	0.981	0.768	0.333	0.800	0.516	0.623	0.746	0.959	1.027	0.999	3.926	2.918	2.210	5.875	3.271	3.850	0.868
11218	chr5	46247379	46248688	+	0	NA	Intergenic	L1Md_A|LINE|L1	-315624	NR_110478	78106	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	8.451	11.663	4.236	7.718	4.116	3.602	7.163	8.939	3.494	12.530	5.881	1.809	4.819	6.640	7.961	7.724	5.845	6.274	7.396	4.149	5.749	8.044	6.439	9.348	14.578
7145	chr18	36014909	36017337	+	0	NA	Intergenic	Intergenic	51293	NR_110349	74002	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0.251	1.145	0.850	0.864	0.392	0.255	0.442	0.615	0.297	0.566	0.129	0.166	0.104	nan	0.482	nan	0.424	0.523	4.143	3.205	2.206	5.139	6.026	5.197	0.753
13728	chr7	132693295	132710792	+	0	NA	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	74873	NM_001347630	77938	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	8.309	6.949	2.277	10.344	5.093	2.407	6.478	9.115	7.478	9.285	6.024	4.196	8.554	9.624	nan	7.642	3.858	9.487	1.706	1.936	1.343	2.637	1.348	1.014	9.182
9307	chr3	52681007	52686436	+	0	NA	Intergenic	Intergenic	-56003	NR_038079	329639	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	5.728	2.107	0.980	3.384	2.299	1.282	6.616	3.837	4.633	5.602	3.113	1.006	7.759	5.615	4.980	5.813	5.473	5.481	0.814	0.730	0.605	0.555	0.385	0.317	6.065
7605	chr19	16241300	16243777	+	0	NA	intron (NM_008139, intron 2 of 6)	intron (NM_008139, intron 2 of 6)	72466	NR_105832	102465218		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	3.832	1.986	0.646	5.255	1.932	0.554	2.613	3.855	3.676	3.335	3.756	2.322	2.570	3.122	3.288	3.892	2.265	5.485	2.004	1.006	0.508	3.540	1.271	0.814	3.531
3340	chr12	56546947	56549327	+	0	NA	Intergenic	L1MEg|LINE|L1	-11229	NM_009385	21869	Mm.89972	NM_009385	ENSMUSG00000001496	Nkx2-1	AV026640|Nkx2.1|T/EBP|Titf1|Ttf-1	NK2 homeobox 1	protein-coding	8.504	10.750	3.271	10.964	4.668	3.063	4.774	6.169	4.416	5.836	3.745	2.260	4.648	7.706	5.845	6.193	2.626	7.402	6.156	4.416	3.148	8.437	4.818	4.460	9.470
15366	chr9	86593622	86596805	+	0	NA	intron (NM_008615, intron 11 of 13)	intron (NM_008615, intron 11 of 13)	23160	NM_027100	69519	Mm.272517	NM_027100	ENSMUSG00000032417	Rwdd2a	1700030C20Rik|AI848608|Rwdd2	RWD domain containing 2A	protein-coding	3.979	0.683	0.196	2.504	3.127	2.189	3.767	6.331	4.202	4.764	2.085	2.096	5.734	5.193	4.561	4.421	3.088	4.068	1.215	0.917	0.902	0.784	1.303	1.197	5.211
6498	chr17	29381974	29384143	+	0	NA	Intergenic	B2_Mm1t|SINE|B2	22144	NM_001159538	26382	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	1.082	1.645	0.437	1.251	0.787	0.571	1.643	1.616	1.287	1.051	0.550	0.229	1.135	2.133	3.096	3.361	1.487	1.915	1.504	0.514	0.752	1.608	1.264	0.674	2.500
14594	chr8	112098181	112104849	+	0	NA	Intergenic	Intergenic	90156	NM_020584	57321	Mm.213064	NM_020584	ENSMUSG00000033430	Terf2ip	Rap1	telomeric repeat binding factor 2, interacting protein	protein-coding	4.238	1.239	0.344	4.395	4.194	1.866	5.812	5.996	4.573	6.256	2.825	1.699	10.469	9.567	5.777	9.244	7.222	5.957	0.989	1.330	1.026	nan	0.811	0.539	5.185
11036	chr5	17389673	17394969	+	0	NA	Intergenic	Intergenic	-83801	NM_027609	70935	Mm.332225	NM_027609	ENSMUSG00000058643	Speer4f1	4922502J04Rik|SPEER-4F|Speer4f	spermatogenesis associated glutamate (E)-rich protein 4F1	protein-coding	3.348	0.391	0.396	5.602	2.694	1.011	1.432	2.432	3.600	2.851	1.240	0.834	1.850	2.201	2.425	2.779	2.505	5.389	0.764	1.728	0.826	0.791	0.715	0.576	1.142
5960	chr16	26613688	26614597	+	0	NA	intron (NM_001159318, intron 1 of 10)	MER103C|DNA|hAT-Charlie	32437	NM_008364	16180	Mm.253424	NM_008364	ENSMUSG00000022514	Il1rap	6430709H04Rik|AI255955|AV239853|IL-1RAcP	interleukin 1 receptor accessory protein	protein-coding	4.151	0.431	0.675	1.622	1.136	0.619	2.474	2.044	2.356	2.076	2.911	0.585	3.656	3.835	3.038	3.055	3.513	3.633	0.554	0.462	0.380	0.600	nan	0.357	1.788
11190	chr5	37112299	37119463	+	0	NA	intron (NM_001347348, intron 7 of 20)	intron (NM_001347348, intron 7 of 20)	30645	NM_001347348	76071	Mm.85280	NM_178394	ENSMUSG00000063646	Jakmip1	5830437M04Rik|C330021K24Rik|Gababrbp|Marlin-1	janus kinase and microtubule interacting protein 1	protein-coding	3.270	3.215	1.448	2.755	2.809	2.387	4.160	5.596	2.462	2.975	2.102	2.120	2.427	5.442	nan	2.174	nan	nan	2.161	1.588	1.199	1.794	2.392	2.195	2.203
7121	chr18	35089706	35093531	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	-27294	NM_009818	12385	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	11.184	11.939	3.863	9.966	5.343	2.953	8.435	10.919	6.193	9.852	7.590	3.412	8.961	11.173	9.654	10.181	6.692	10.381	5.069	2.495	1.427	5.160	2.749	2.284	13.022
199	chr1	58052078	58056659	+	0	NA	intron (NM_009676, intron 6 of 34)	intron (NM_009676, intron 6 of 34)	24399	NM_009676	11761	Mm.26787	NM_009676	ENSMUSG00000063558	Aox1	AI196512|AI255253|Ao|Aox-1|Aox-2|Aox2|Moro|Ro	aldehyde oxidase 1	protein-coding	7.110	3.650	1.850	2.314	2.547	1.108	6.908	5.669	4.248	4.461	3.223	4.517	6.142	6.034	5.113	8.499	7.381	5.115	2.727	1.376	0.955	2.049	1.923	1.213	5.631
4972	chr14	121449213	121454658	+	0	NA	Intergenic	Intergenic	53319	NM_053079	56643	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	3.845	0.890	0.690	2.675	3.640	3.213	3.321	5.051	3.003	3.157	1.304	1.010	2.744	4.082	nan	3.232	2.373	3.349	2.155	2.363	2.016	2.392	3.804	3.214	3.353
14176	chr8	41657881	41660004	+	0	NA	Intergenic	L1Md_T|LINE|L1	-168325	NR_045497	69966	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA	3.791	0.666	0.456	1.147	0.525	0.308	4.767	6.146	1.593	1.347	0.938	0.620	8.434	3.852	3.718	3.601	1.991	2.295	0.597	0.789	0.462	1.143	0.706	0.776	nan
6747	chr17	56388240	56393239	+	0	NA	intron (NM_172132, intron 11 of 22)	MLT1D|LTR|ERVL-MaLR	28170	NR_105943	102465590		NR_105943	ENSMUSG00000098339	Mir6977	Gm27922|mmu-mir-6977	microRNA 6977	ncRNA	5.910	nan	0.592	3.754	3.371	3.416	9.530	5.417	5.792	7.015	1.240	0.854	6.767	8.731	7.191	8.343	8.663	5.371	3.031	1.724	2.092	1.181	3.211	3.174	8.780
7764	chr19	40781883	40783939	+	0	NA	Intergenic	L1_Mus3|LINE|L1	-48368	NM_172839	240665	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	5.455	4.737	2.224	4.324	3.468	1.763	1.374	nan	2.947	3.954	2.213	1.779	0.984	2.099	2.131	3.131	nan	3.390	0.680	1.881	1.067	0.397	0.776	0.366	3.362
9779	chr3	122623508	122628372	+	0	NA	Intergenic	Intergenic	-6226	NM_153118	214459	Mm.209491	NM_153118	ENSMUSG00000039735	Fnbp1l	2610318I01Rik|AW548221|TOCA1|toca-1	formin binding protein 1-like	protein-coding	6.764	2.723	1.481	3.149	3.254	1.706	6.148	5.867	3.268	4.118	5.789	4.286	8.303	8.548	4.744	5.400	7.853	4.859	2.745	2.082	1.211	2.246	nan	1.718	5.791
7934	chr2	4565582	4573197	+	0	NA	intron (NM_001347086, intron 14 of 24)	C-rich|Low_complexity|Low_complexity	9635	NM_001177844	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	9.170	2.532	1.575	5.822	7.596	5.232	9.078	9.881	5.733	7.704	1.955	1.680	11.518	9.559	7.709	9.174	9.623	9.160	1.318	1.555	1.403	1.359	1.350	1.158	9.028
1899	chr11	3829567	3833217	+	0	NA	intron (NM_152818, intron 1 of 13)	intron (NM_152818, intron 1 of 13)	32511	NM_152818	74309	Mm.61022	NM_152818	ENSMUSG00000020435	Osbp2	1700095P05Rik|C630001G20Rik|Gm244|ORP-4|OSBPL1	oxysterol binding protein 2	protein-coding	4.526	1.559	0.391	6.571	2.543	1.552	3.799	3.798	3.679	4.111	3.219	1.505	2.996	4.776	3.806	4.108	2.859	4.655	0.870	nan	0.932	0.850	0.812	0.661	5.004
4606	chr14	35573065	35578037	+	0	NA	intron (NM_008166, intron 15 of 15)	intron (NM_008166, intron 15 of 15)	236427	NM_001033766	239036	Mm.239970	NM_001033766	ENSMUSG00000041068	4930596D02Rik	-	RIKEN cDNA 4930596D02 gene	protein-coding	4.066	7.420	5.077	1.643	2.323	1.729	4.501	6.070	2.523	3.095	2.724	2.516	3.519	4.340	3.053	3.171	2.901	2.580	1.930	1.904	1.379	1.120	2.196	1.610	3.140
11178	chr5	36699101	36703020	+	0	NA	Intergenic	Intergenic	-5039	NM_001081232	320661	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	4.033	1.260	0.500	1.995	2.908	1.972	5.833	2.431	2.370	3.181	2.500	1.249	3.825	5.332	4.801	3.693	nan	3.717	1.690	0.744	0.773	1.804	1.401	1.395	5.772
1929	chr11	5343228	5345746	+	0	NA	intron (NM_001080924, intron 1 of 8)	intron (NM_001080924, intron 1 of 8)	37253	NM_001290501	407821	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	4.212	6.697	1.756	7.379	1.890	1.723	3.107	4.655	3.268	8.637	3.128	2.201	3.759	4.068	5.932	6.820	2.777	6.900	3.431	nan	1.655	3.434	2.108	2.975	8.212
15153	chr9	60389082	60395805	+	0	NA	intron (NM_001040426, intron 5 of 17)	intron (NM_001040426, intron 5 of 17)	118592	NM_001040426	207596	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	5.413	0.552	0.460	2.766	1.919	1.116	5.573	5.823	3.828	4.011	2.146	2.257	7.294	6.711	6.858	7.322	4.913	6.527	1.415	0.677	0.492	1.177	1.446	1.064	7.520
13391	chr7	88147766	88154523	+	0	NA	Intergenic	Lx5|LINE|L1	-126941	NM_009982	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	3.638	3.517	2.439	3.087	5.617	4.754	2.584	4.666	nan	3.880	2.287	1.158	4.079	6.332	2.927	nan	4.171	nan	1.652	1.551	1.345	nan	1.821	1.540	nan
11396	chr5	89130736	89133268	+	0	NA	intron (NM_001197147, intron 9 of 25)	RSINE1|SINE|B4	244742	NM_018760	54403	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	2.255	1.474	0.711	1.748	1.879	2.308	3.608	3.524	1.540	1.615	0.406	0.265	1.972	2.601	3.463	3.757	2.846	1.432	0.860	0.504	0.739	0.671	0.442	0.903	1.652
10870	chr4	147310351	147315287	+	0	NA	intron (NM_001039209, intron 1 of 2)	Lx8|LINE|L1	136953	NM_001039209	195531	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152|OTTMUSG00000010671	zinc finger protein 982	protein-coding	6.436	nan	1.465	5.309	4.310	3.090	3.812	5.285	3.169	5.541	2.313	2.353	2.812	4.323	3.750	4.282	3.001	4.067	2.922	3.120	3.006	5.457	4.675	4.991	5.887
9335	chr3	58327945	58330579	+	0	NA	Intergenic	(TAGA)n|Simple_repeat|Simple_repeat	-85458	NM_001347233	72033	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	7.075	17.013	5.681	9.862	3.308	2.328	8.631	5.964	5.668	11.543	6.210	3.339	9.313	8.235	8.616	9.003	5.267	10.302	4.409	1.519	1.625	4.774	2.202	1.850	10.752
12647	chr6	118881103	118892076	+	0	NA	intron (NM_001256002, intron 3 of 47)	ORR1F|LTR|ERVL-MaLR	6431	NR_046053	74363	Mm.399403	NR_046053		4931430N09Rik	-	RIKEN cDNA 4931430N09 gene	ncRNA	5.576	1.008	0.337	4.052	3.286	1.679	2.931	3.313	4.626	7.127	1.251	0.675	6.780	7.579	5.311	11.387	4.917	5.943	3.204	1.098	0.578	1.833	nan	1.807	7.897
13618	chr7	119447448	119456189	+	0	NA	intron (NM_025989, intron 5 of 10)	intron (NM_025989, intron 5 of 10)	7454	NM_025989	67133	Mm.46403	NM_025989	ENSMUSG00000030954	Gp2	2310037I18Rik|AV060639	glycoprotein 2 (zymogen granule membrane)	protein-coding	3.190	0.590	0.348	4.314	3.796	2.252	4.193	2.657	5.070	5.502	1.387	0.981	4.914	6.230	6.386	6.284	3.752	6.607	1.272	0.634	0.538	0.897	0.946	0.700	6.337
12281	chr6	61610010	61613043	+	0	NA	intron (NM_001164316, intron 6 of 10)	MTE2b|LTR|ERVL-MaLR	-430716	NR_040287	100504262	Mm.438066	NR_040287		A730020E08Rik	-	RIKEN cDNA A730020E08 gene	ncRNA	6.227	0.369	0.461	1.853	1.963	1.260	5.625	3.657	3.940	3.753	0.591	0.959	8.228	6.242	5.582	nan	8.504	4.719	nan	0.629	0.658	0.415	0.547	0.661	3.161
9481	chr3	89765566	89768355	+	0	NA	TTS (NR_130957)	TTS (NR_130957)	-2328	NM_009602	11444	Mm.35088	NM_009602	ENSMUSG00000027950	Chrnb2	Acrb-2|Acrb2|C030030P04Rik|[b]2-nAchR	cholinergic receptor, nicotinic, beta polypeptide 2 (neuronal)	protein-coding	6.460	15.076	6.143	7.313	4.001	2.818	7.566	7.148	3.141	5.619	4.057	1.625	3.552	5.628	6.784	8.264	6.474	4.531	6.301	4.233	4.986	5.559	7.557	5.977	8.980
12835	chr6	144568726	144571642	+	0	NA	Intergenic	Intergenic	-102684	NR_040519	66760	Mm.233631	NR_040519	ENSMUSG00000085785	Sox5os3	4933425H06Rik	SRY (sex determining region Y)-box 5, opposite strand 3	ncRNA	6.790	0.599	0.761	3.147	6.911	6.484	7.520	5.252	3.387	nan	1.381	0.495	5.178	8.488	7.716	9.915	6.542	7.806	0.972	nan	0.789	nan	0.717	0.522	6.329
6507	chr17	29570244	29582054	+	0	NA	intron (NM_198647, intron 7 of 12)	intron (NM_198647, intron 7 of 12)	20156	NR_045447	74092	Mm.396264	NR_045447	ENSMUSG00000089900	Tbc1d22bos	0610038L08Rik	TBC1 domain family, member 22B, opposite strand	ncRNA	5.593	5.196	2.825	5.572	4.078	3.050	2.939	2.965	3.578	3.494	1.293	1.855	3.022	4.313	2.894	nan	2.854	3.814	2.392	2.118	2.602	2.685	2.133	2.323	5.216
3223	chr12	21367535	21371021	+	0	NA	intron (NR_120376, intron 1 of 18)	intron (NR_120376, intron 1 of 18)	4354	NR_102380	11491	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	6.188	1.391	1.242	4.119	6.787	5.531	5.888	5.165	3.272	4.124	1.742	1.918	6.147	7.597	4.855	7.488	6.198	7.733	0.696	0.864	0.949	0.611	0.843	0.684	7.018
3244	chr12	25932773	25938264	+	0	NA	Intergenic	Intergenic	274987	NR_131149	629481	Mm.390460	NR_131149		Gm29687	-	predicted gene, 29687	ncRNA	4.832	4.391	1.834	3.054	2.360	1.128	3.300	3.546	2.924	3.296	3.508	1.221	1.984	2.867	5.339	6.506	3.563	3.716	2.398	2.222	1.322	4.376	1.010	0.691	8.649
5581	chr15	95633124	95636129	+	0	NA	intron (NM_207533, intron 2 of 3)	intron (NM_207533, intron 2 of 3)	20145	NM_207533	223843	Mm.152937	NM_207533	ENSMUSG00000045608	Dbx2	9430056A22Rik|9630005K15|AI846217|Gm1229	developing brain homeobox 2	protein-coding	9.762	2.408	1.661	6.774	8.577	5.370	8.078	9.009	5.008	6.932	3.310	5.014	8.507	10.371	8.120	7.487	7.727	6.533	1.632	1.604	0.897	1.023	1.199	0.782	7.436
2280	chr11	60588496	60591676	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	52403	NM_172943	268420	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	8.517	9.604	2.729	7.627	4.405	1.999	5.661	6.472	5.722	6.966	6.101	3.226	6.941	8.301	7.899	9.861	5.731	7.786	3.535	2.750	1.873	3.842	2.627	1.985	9.327
15657	chrX	7249553	7252582	+	0	NA	intron (NM_001243762, intron 2 of 13)	MIR|SINE|MIR	-2570	NR_030242	751544		NR_030242	ENSMUSG00000070139	Mir532	Mirn532|mir-532|mmu-mir-532	microRNA 532	ncRNA	2.389	3.875	1.120	2.762	1.472	0.867	2.703	1.725	1.847	2.280	4.992	1.765	2.861	4.909	4.030	4.301	2.472	3.125	0.787	0.714	0.617	2.130	1.499	0.774	3.961
273	chr1	69701110	69705150	+	0	NA	Intergenic	IAPLTR1_Mm|LTR|ERVK	-17170	NM_011770	22779	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	1.431	1.773	0.803	0.839	0.712	0.347	0.756	1.524	1.308	0.920	7.310	5.875	1.094	nan	1.138	nan	nan	nan	0.482	1.345	0.825	0.463	0.358	0.418	0.580
10137	chr4	59731346	59735841	+	0	NA	intron (NM_001015681, intron 2 of 3)	L1ME3|LINE|L1	50262	NM_001013577	66209	Mm.51988	NM_001013577	ENSMUSG00000038544	Inip	1110054O05Rik|2610312O17Rik|AA399876|Ssbip1	INTS3 and NABP interacting protein	protein-coding	0.802	10.072	5.170	0.684	0.426	0.298	nan	0.687	0.580	0.700	0.474	0.479	0.320	0.510	0.716	0.993	0.565	1.247	nan	0.673	0.321	3.058	0.506	0.251	1.230
8626	chr2	125613328	125621421	+	0	NA	intron (NM_001081091, intron 6 of 27)	ID4_|SINE|ID	7739	NM_001081091	99100	Mm.330545	NM_001081091	ENSMUSG00000068394	Cep152	AI851464|mKIAA0912	centrosomal protein 152	protein-coding	7.459	1.987	1.263	3.599	4.047	2.704	5.219	8.141	5.408	7.643	2.777	1.855	7.242	7.808	5.890	8.610	8.175	6.594	nan	1.557	1.320	1.715	1.246	0.827	7.710
471	chr1	95372981	95377355	+	0	NA	Intergenic	Intergenic	61540	NM_026321	67698	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	11.194	nan	3.378	7.352	4.669	3.294	7.085	7.455	4.941	7.596	5.440	2.736	8.970	9.231	7.294	11.919	8.206	7.597	nan	1.946	2.637	nan	3.517	2.495	nan
6914	chr17	84539558	84549959	+	0	NA	intron (NM_177606, intron 2 of 29)	intron (NM_177606, intron 2 of 29)	32863	NM_177606	213556	Mm.215159	NM_177606	ENSMUSG00000040852	Plekhh2	AI256725|E030001K05|mKIAA2028	pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	protein-coding	4.720	7.670	2.870	6.066	3.041	1.740	4.207	5.026	nan	3.985	8.339	3.230	3.077	4.841	4.964	4.698	3.830	4.568	2.587	2.425	1.637	3.322	2.682	2.108	5.420
15716	chrX	39500711	39507182	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	157680	NM_001177380	78631	Mm.243738	NM_001177380	ENSMUSG00000079619	Cypt15	1700085A12Rik	cysteine-rich perinuclear theca 15	protein-coding	8.568	7.115	3.564	6.732	6.937	4.328	6.426	6.748	4.942	9.350	5.800	3.126	6.370	9.414	5.620	6.872	7.558	6.502	4.045	3.849	2.980	4.186	3.899	3.901	7.785
11356	chr5	74555710	74557889	+	0	NA	intron (NM_001159574, intron 8 of 15)	intron (NM_001159574, intron 8 of 15)	21317	NM_001159574	66899	Mm.272468	NM_024183	ENSMUSG00000029227	Fip1l1	1300019H17Rik|Rje	FIP1 like 1 (S. cerevisiae)	protein-coding	2.335	0.610	0.297	3.080	2.007	1.073	3.963	1.777	3.680	4.069	3.092	1.123	3.878	4.974	3.070	5.430	2.659	nan	0.980	0.595	0.235	1.490	0.827	0.569	3.946
10642	chr4	132740052	132742606	+	0	NA	intron (NM_133888, intron 4 of 7)	MIR|SINE|MIR	-8783	NM_201368	381560	Mm.44558	NM_201368	ENSMUSG00000037752	Xkr8	4931440N07Rik|AI597014|Gm1031|XRG8|mXkr8	X-linked Kx blood group related 8	protein-coding	7.188	3.895	1.790	5.776	6.491	2.073	6.495	5.082	4.055	6.654	4.527	1.592	5.846	9.460	nan	6.277	4.105	5.223	5.557	3.882	1.883	7.703	3.631	2.640	7.543
4991	chr14	122185011	122186284	+	0	NA	intron (NM_029556, intron 1 of 7)	L1MC3|LINE|L1	3953	NM_029556	69634	Mm.34608	NM_029556	ENSMUSG00000025545	Clybl	0610033J05Rik|2310014M14Rik|AI256068|Clb	citrate lyase beta like	protein-coding	3.046	1.620	1.444	2.018	2.620	1.633	2.852	5.402	3.767	2.916	1.101	1.549	2.851	4.069	4.056	5.158	2.803	3.114	1.615	1.539	1.514	0.610	1.639	1.638	4.175
2262	chr11	59764907	59767651	+	0	NA	intron (NM_012027, intron 17 of 23)	intron (NM_012027, intron 17 of 23)	20943	NR_110894	194908	Mm.344651	NM_183139	ENSMUSG00000043648	Pld6	4933433K01Rik|Gm10|Zuc|mZuc|mitoPLD	phospholipase D family, member 6	protein-coding	2.775	0.827	0.524	3.501	2.846	2.199	3.076	3.587	2.987	3.460	0.856	0.718	3.071	4.891	4.307	4.415	2.227	4.682	3.482	2.349	1.712	5.238	1.991	1.638	nan
9475	chr3	89634682	89636982	+	0	NA	intron (NM_080466, intron 3 of 7)	MLT1F2|LTR|ERVL-MaLR	-79190	NM_001038587	56417	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	2.497	1.146	0.496	5.811	1.116	1.120	0.838	0.744	1.432	4.071	0.652	0.482	1.106	1.282	1.546	2.151	1.063	2.986	nan	0.492	1.280	1.027	0.591	1.086	3.180
1936	chr11	5775549	5780730	+	0	NA	intron (NR_015577, intron 4 of 6)	intron (NR_015577, intron 4 of 6)	-10344	NM_001146309	13169	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	nan	3.462	2.376	3.144	2.787	1.725	4.824	4.158	3.204	3.569	1.876	1.589	4.778	6.787	3.913	4.424	4.591	3.095	3.911	nan	2.323	3.839	3.536	3.021	3.842
7089	chr18	25835008	25845241	+	0	NA	Intergenic	Intergenic	-86141	NM_001174074	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	2.749	0.654	0.389	1.153	0.794	0.372	4.320	5.840	1.624	2.699	1.160	2.258	2.953	1.863	2.530	nan	2.583	2.790	6.381	3.318	1.912	6.690	5.105	3.520	4.661
2912	chr11	106646927	106651215	+	0	NA	Intergenic	B1F1|SINE|Alu	-36141	NM_198292	21763	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	9.773	13.873	5.141	12.529	7.208	4.850	7.970	8.229	nan	nan	8.065	5.426	8.441	12.049	10.059	10.657	8.140	9.140	6.795	3.779	4.506	nan	4.920	6.550	13.483
131	chr1	39957845	39960384	+	0	NA	intron (NM_001252200, intron 2 of 31)	intron (NM_001252200, intron 2 of 31)	58201	NM_008696	26921	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	12.978	8.834	3.288	10.945	6.195	3.461	8.619	8.322	6.311	13.652	8.528	4.914	8.187	11.140	8.298	14.013	7.991	9.673	6.361	4.447	3.021	7.273	4.914	4.354	15.400
11977	chr5	149550520	149553007	+	0	NA	intron (NM_029440, intron 3 of 22)	intron (NM_029440, intron 3 of 22)	-13733	NR_045423	100415916	Mm.145528	NR_045423	ENSMUSG00000107132	Gm15997	OTTMUSG00000028862	predicted gene 15997	ncRNA	5.126	3.814	1.070	4.494	3.104	1.194	4.666	5.581	nan	4.392	2.893	1.111	4.544	6.476	5.369	5.284	3.311	4.455	4.592	3.768	2.454	6.050	4.539	2.487	6.016
7686	chr19	29439947	29447398	+	0	NA	intron (NM_021396, intron 3 of 5)	intron (NM_021396, intron 3 of 5)	32753	NM_021396	58205	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	5.880	8.364	4.529	nan	4.053	2.616	4.934	3.692	3.088	3.121	nan	1.444	2.104	3.944	3.627	3.882	3.599	4.392	nan	2.172	1.792	3.613	nan	2.056	4.118
7119	chr18	35013470	35021248	+	0	NA	Intergenic	Intergenic	-63008	NM_010481	15526	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	4.126	13.388	6.286	3.813	2.891	1.721	3.732	4.375	2.129	3.577	2.872	1.306	2.973	nan	3.599	nan	3.194	3.250	2.448	1.650	1.923	2.314	2.164	2.378	5.567
1565	chr10	86333874	86335773	+	0	NA	intron (NM_011595, intron 1 of 4)	intron (NM_011595, intron 1 of 4)	34411	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	nan	0.527	0.297	1.302	2.734	0.945	2.745	2.860	1.157	2.120	0.625	0.624	2.777	5.431	1.611	2.684	2.547	1.423	6.857	1.477	0.482	3.368	1.448	1.081	5.312
13417	chr7	95390356	95394463	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-778835	NM_001310762	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	6.155	1.410	1.117	3.243	3.657	1.809	8.095	6.587	5.580	5.222	3.115	2.169	9.695	8.400	7.485	5.641	7.955	7.088	nan	1.103	0.918	0.450	0.577	0.442	3.101
14489	chr8	96909428	96912978	+	0	NA	Intergenic	Intergenic	-365230	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	13.744	20.344	7.781	15.402	7.401	3.329	10.285	17.039	9.699	16.838	9.292	5.044	16.073	17.660	14.262	17.237	12.991	13.944	5.962	4.992	3.347	9.239	5.254	3.818	17.889
12120	chr6	31083879	31086145	+	0	NA	Intergenic	Intergenic	-21919	NR_029532	387223		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	4.128	1.576	0.756	5.074	5.007	2.698	4.560	3.610	4.683	6.444	1.159	0.755	4.403	5.494	5.632	7.970	4.792	5.940	nan	1.782	1.501	3.583	0.908	0.589	4.140
6016	chr16	32876701	32879412	+	0	NA	intron (NM_027226, intron 1 of 8)	CpG	272	NM_001159349	69823	Mm.12831	NM_027226	ENSMUSG00000022800	Fyttd1	2010005M05Rik|3830411L18Rik|3830421F13Rik|4933423A17Rik|AI098218|AW539567|C85190	forty-two-three domain containing 1	protein-coding	7.898	8.733	2.224	7.318	3.726	1.848	5.000	8.644	5.052	7.786	4.463	3.046	7.573	7.335	7.598	9.978	5.267	8.730	3.829	1.177	1.266	4.017	nan	2.497	12.321
13427	chr7	96556545	96559100	+	0	NA	intron (NM_011858, intron 5 of 32)	ORR1A2|LTR|ERVL-MaLR	-215858	NR_046043	670727	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	OTTMUSG00000021245	predicted gene 15412	ncRNA	2.286	0.980	0.602	2.520	1.712	0.669	2.192	4.009	2.041	1.890	0.712	0.879	1.864	1.995	2.260	3.259	1.497	3.681	nan	0.706	0.807	0.723	0.457	0.562	2.016
10425	chr4	117769777	117772770	+	0	NA	Intergenic	Intergenic	-5607	NM_029416	75753	Mm.3848	NM_029416	ENSMUSG00000048626	Klf17	7420700M05Rik|AA420409|AU043468|C85123|D4Ertd561e|Gzf|Zfp393	Kruppel-like factor 17	protein-coding	4.184	0.683	0.416	2.473	2.345	1.170	4.543	3.885	3.387	4.393	0.690	0.594	5.780	6.391	4.939	6.521	2.881	5.603	0.564	0.724	0.637	0.727	0.407	0.191	7.197
1872	chr10	128179986	128186074	+	0	NA	Intergenic	ID_B1|SINE|B4	-2733	NM_001039080	56516	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	11.010	13.605	6.129	10.741	7.403	4.583	6.236	8.728	7.341	9.494	10.526	5.588	7.884	11.584	8.097	9.441	9.794	8.733	4.529	4.416	3.941	3.829	nan	4.892	11.522
11403	chr5	89770542	89774118	+	0	NA	intron (NM_001081401, intron 4 of 21)	intron (NM_001081401, intron 4 of 21)	111004	NM_177872	330119	Mm.133062	NM_177872	ENSMUSG00000043635	Adamts3	1100001H14Rik|6330442E02Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	protein-coding	1.461	0.246	0.305	2.048	3.432	2.364	2.995	2.419	4.476	5.211	0.832	1.104	2.881	4.112	2.891	4.332	2.991	3.843	0.778	0.310	0.411	0.333	0.728	0.429	1.837
7991	chr2	18687138	18689906	+	0	NA	Intergenic	Intergenic	-10500	NM_001001334	381350	Mm.330024	NM_001001334	ENSMUSG00000037708	Spag6	Spag6l	sperm associated antigen 6	protein-coding	13.933	9.756	3.617	11.466	5.834	3.186	10.255	12.898	7.881	11.831	7.657	5.070	11.915	13.462	9.800	12.972	10.505	12.031	9.507	7.593	4.528	8.709	9.765	8.274	14.442
7097	chr18	32090361	32093148	+	0	NA	intron (NM_173441, intron 12 of 13)	intron (NM_173441, intron 12 of 13)	24020	NM_173441	73473	Mm.66853	NM_173441	ENSMUSG00000024384	Iws1	1700069O15Rik|3000008H23|AL117927|AW214353	IWS1, SUPT6 interacting protein	protein-coding	4.515	1.144	0.388	8.913	1.061	0.657	0.994	1.838	3.066	3.388	0.598	0.581	1.009	2.042	1.566	2.894	0.918	4.196	nan	0.617	0.616	nan	0.639	0.227	3.882
6708	chr17	48023795	48029683	+	0	NA	Intergenic	L2a|LINE|L2	11554	NM_029689	76651	Mm.76918	NM_029689	ENSMUSG00000094928	1700122O11Rik	-	RIKEN cDNA 1700122O11 gene	protein-coding	4.417	1.869	1.269	2.689	3.477	1.628	8.768	6.789	2.464	4.647	2.217	1.770	5.158	7.153	5.366	6.029	5.027	4.105	5.720	4.152	2.850	5.253	7.069	5.034	5.586
15390	chr9	95092770	95095302	+	0	NA	intron (NM_177909, intron 12 of 15)	MT2C_Mm|LTR|ERVL	313234	NM_018763	54371	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	5.250	1.767	0.898	2.009	1.149	0.389	1.828	4.127	1.554	2.339	4.274	0.863	1.383	3.179	4.538	2.213	1.813	2.135	1.192	0.734	0.798	1.098	0.646	0.398	3.594
14659	chr8	120867340	120880123	+	0	NA	Intergenic	Intergenic	135092	NM_001301811	15900	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.426	0.401	0.276	0.322	0.354	0.184	0.554	0.370	0.369	0.310	0.663	0.396	0.237	0.407	0.319	nan	0.412	0.347	4.243	3.280	2.052	8.635	4.424	2.595	0.367
14260	chr8	66676099	66686932	+	0	NA	exon (NM_016708, exon 2 of 2)	exon (NM_016708, exon 2 of 2)	6579	NM_016708	18168	Mm.10685	NM_016708	ENSMUSG00000044014	Npy5r	NPY5-R|NPYY5-R|Y5R	neuropeptide Y receptor Y5	protein-coding	0.693	0.584	0.333	1.087	0.356	0.181	0.398	0.519	0.614	0.769	0.695	0.465	0.242	0.517	0.497	0.778	0.634	0.814	nan	6.282	3.179	10.996	1.724	1.350	nan
13086	chr7	30286462	30294240	+	0	NA	TTS (NR_144498)	TTS (NR_144498)	-1402	NM_001081114	76686	Mm.159258	NM_001081114	ENSMUSG00000013921	Clip3	1500005P14Rik|AI844915|Clipr-59	CAP-GLY domain containing linker protein 3	protein-coding	5.231	1.081	0.433	5.539	4.778	3.005	6.981	8.924	4.553	5.100	4.066	3.247	7.670	8.784	7.438	7.936	5.079	7.169	4.547	2.970	2.649	4.938	3.664	3.561	8.740
7489	chr19	5477237	5478151	+	0	NA	intron (NM_001164352, intron 4 of 9)	intron (NM_001164352, intron 4 of 9)	2959	NM_001164352	58859	Mm.276367	NM_021474	ENSMUSG00000024909	Efemp2	0610011K11Rik|Fbln4|MBP1	epidermal growth factor-containing fibulin-like extracellular matrix protein 2	protein-coding	1.414	0.470	0.389	2.012	1.060	2.110	2.081	2.242	2.112	2.839	1.281	1.033	1.563	4.566	2.293	1.416	1.795	2.238	1.258	1.045	1.067	5.215	1.132	1.169	3.605
12084	chr6	22300570	22306740	+	0	NA	Intergenic	Intergenic	15428	NM_053116	93735	Mm.137403	NM_053116	ENSMUSG00000029671	Wnt16	E130309I19Rik	wingless-type MMTV integration site family, member 16	protein-coding	5.655	4.502	1.769	3.684	3.005	1.544	12.798	10.731	4.209	4.813	1.586	4.813	9.277	8.191	8.521	11.201	8.685	4.788	2.419	1.519	1.442	2.349	2.304	1.987	5.889
3875	chr13	21845188	21846561	+	0	NA	Intergenic	MERVL_2A-int|LTR|ERVL	12131	NM_001097979	665596	Mm.371766	NM_001097979	ENSMUSG00000069307	Hist1h2bq	Gm13646|OTTMUSG00000013203	histone cluster 1, H2bq	protein-coding	1.842	7.153	1.894	3.694	0.895	0.513	1.292	1.706	2.507	3.406	2.269	2.047	1.877	nan	4.297	3.525	nan	2.997	2.396	0.675	0.679	3.379	0.837	0.474	nan
2513	chr11	78248306	78250815	+	0	NA	intron (NM_009143, intron 1 of 2)	intron (NM_009143, intron 1 of 2)	3814	NM_009143	20316	Mm.20755	NM_009143	ENSMUSG00000002064	Sdf2	AI853825	stromal cell derived factor 2	protein-coding	5.971	0.729	0.311	2.374	2.860	2.288	7.631	5.740	2.919	3.010	1.123	0.842	5.166	7.345	5.187	5.743	6.822	4.406	1.450	0.807	nan	1.364	1.517	1.420	5.212
37	chr1	17476869	17479379	+	0	NA	Intergenic	L1Md_A|LINE|L1	-123777	NM_053191	94227	Mm.442452	NM_053191	ENSMUSG00000067780	Pi15	P24TI|P25TI|PI-15|SugarCrisp	peptidase inhibitor 15	protein-coding	nan	0.881	0.421	0.284	0.269		0.275	0.459	0.259	0.172	7.221	4.338	0.246	0.516	0.193	0.434	0.789	0.463	0.504	0.808	0.195	0.316	0.347	0.075	0.258
12842	chr6	145245321	145249928	+	0	NA	intron (NM_021284, intron 1 of 4)	intron (NM_021284, intron 1 of 4)	2607	NM_021284	16653	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras	Kirsten rat sarcoma viral oncogene homolog	protein-coding	nan	0.813	0.488	nan	0.944	0.689	2.049	nan	1.994	nan	0.765	0.407	nan	3.431	3.140	nan	2.561	1.883	0.682	nan	0.337	nan	0.353	0.407	nan
6416	chr17	26011305	26012979	+	0	NA	intron (NM_001162869, intron 5 of 14)	intron (NM_001162869, intron 5 of 14)	9718	NM_153140	215445	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	5.137	10.043	2.259	7.700	1.506	0.563	5.997	5.011	4.187	5.339	2.806	2.132	5.087	6.072	9.119	10.180	5.454	5.574	4.891	1.678	1.400	6.849	2.714	1.749	13.133
855	chr1	169360176	169364817	+	0	NA	Intergenic	LTR78|LTR|ERV1	168968	NM_023284	66977	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	7.628	0.443	0.166	nan	1.007	0.582	5.854	3.037	nan	4.897	3.049	0.656	nan	5.295	nan	5.887	5.821	5.180	0.466	0.444	0.264	nan	nan	0.255	4.575
11589	chr5	114480651	114482277	+	0	NA	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	37195	NM_023556	17855	Mm.28088	NM_023556	ENSMUSG00000041939	Mvk	2310010A05Rik|AI256848|AI414037|MK	mevalonate kinase	protein-coding	2.825	0.457	0.145	1.671	1.295	0.760	4.883	1.967	2.114	3.508	0.126	0.420	4.359	6.295	2.811	3.462	3.398	3.246	nan	nan	0.707	0.468	nan	0.703	3.714
3659	chr12	103499623	103502047	+	0	NA	Intergenic	Intergenic	-31730	NM_028980	74521	Mm.248619	NM_028980	ENSMUSG00000021209	Ppp4r4	8430415E04Rik|mKIAA1622	protein phosphatase 4, regulatory subunit 4	protein-coding	7.221	0.745	0.344	6.815	4.611	2.088	5.579	4.291	5.477	6.122	4.318	1.857	5.868	7.740	6.894	8.882	4.701	8.674	0.945	0.850	0.152	0.936	0.641	0.277	10.578
11772	chr5	134732967	134736358	+	0	NA	intron (NM_007925, intron 4 of 36)	RSINE1|SINE|B4	12661	NM_007925	13717	Mm.275320	NM_007925	ENSMUSG00000029675	Eln	AI385707|AI480567|E030024M20Rik	elastin	protein-coding	5.314	1.632	0.952	4.479	4.727	3.092	4.445	4.857	4.403	4.989	1.669	1.068	6.411	8.415	6.115	6.953	4.598	7.240	1.001	0.737	0.414	0.829	nan	0.495	5.875
9755	chr3	121552483	121562597	+	0	NA	Intergenic	Intergenic	-25196	NM_145394	213603	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	6.221	0.377	0.617	3.815	4.304	2.196	5.673	5.074	4.865	nan	2.014	1.842	6.946	8.754	4.502	nan	8.401	6.178	1.118	1.445	0.824	0.858	nan	1.575	nan
6269	chr16	96215686	96219091	+	0	NA	intron (NM_015825, intron 3 of 7)	intron (NM_015825, intron 3 of 7)	16918	NM_015825	50795	Mm.28638	NM_015825	ENSMUSG00000040666	Sh3bgr	5430437A18Rik	SH3-binding domain glutamic acid-rich protein	protein-coding	4.688	1.162	0.364	1.981	1.523	0.827	5.649	2.795	nan	2.149	0.421	0.357	10.001	6.473	2.638	6.260	2.441	4.703	nan	0.558	0.711	0.564	0.178	0.475	2.412
1839	chr10	126625657	126626816	+	0	NA	Intergenic	Intergenic	84155	NR_105841	102465224		NR_105841	ENSMUSG00000098756	Mir378d	Gm27650|mmu-mir-378d	microRNA 378d	ncRNA	4.391	4.475	0.436	4.918	2.238	1.301	3.944	3.135	2.042	3.790	1.307	1.115	2.463	3.101	4.344	3.892	2.442	3.092	3.537	2.180	2.088	3.268	nan	3.140	7.847
1788	chr10	118596580	118597800	+	0	NA	Intergenic	L1Md_A|LINE|L1	-40665	NR_104123	103214	Mm.30529	NR_104123		Tmevpg1	AI447422	Theiler's murine encephalomyelitis virus persistence candidate gene 1	ncRNA	2.843	0.261	0.366	1.522	1.859	2.191	4.560	2.431	1.691	1.521	0.347	0.260	2.145	3.706	3.284	3.589	3.910	3.028	0.970	0.537	1.027	0.558	0.702	0.853	4.285
9462	chr3	89069979	89071846	+	0	NA	intron (NM_138679, intron 23 of 26)	intron (NM_138679, intron 23 of 26)	19119	NM_001083808	72296	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	6.189	6.937	4.211	6.318	5.669	3.157	7.809	6.215	4.006	5.831	4.450	3.484	6.032	7.660	6.555	6.324	6.623	5.977	nan	4.008	4.093	4.197	4.553	2.603	7.346
15147	chr9	60112293	60113800	+	0	NA	intron (NM_001040426, intron 7 of 17)	L1M3c|LINE|L1	28174	NM_172444	207596	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	2.656	1.113	0.346	2.074	0.796	0.354	2.492	2.965	2.506	3.206	1.611	0.769	2.307	3.604	2.319	2.641	1.595	3.495	0.570	0.214	0.188	0.543	0.432	0.420	3.574
11045	chr5	20654198	20655342	+	0	NA	intron (NM_001170746, intron 21 of 22)	intron (NM_001170746, intron 21 of 22)	227354	NM_172992	68770	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	1.003	1.031	0.568	1.775	1.792	0.134	1.866	1.199	1.557	1.767	0.460	0.468	3.631	4.216	1.891	2.790	1.282	1.501	0.890	0.771	0.214	0.865	0.744	0.428	1.189
9781	chr3	122755384	122758429	+	0	NA	intron (NM_153422, intron 2 of 20)	intron (NM_153422, intron 2 of 20)	27748	NM_153422	242202	Mm.134911	NM_153422	ENSMUSG00000053965	Pde5a	Cgbpde|Cn5n|PDE5a2|Pde5|Pde5a1	phosphodiesterase 5A, cGMP-specific	protein-coding	3.003	0.761	0.540	1.843	2.032	1.041	3.161	3.309	3.425	nan	5.015	3.834	4.493	3.275	2.238	2.047	1.911	4.108	0.953	0.901	0.727	0.730	nan	0.716	nan
2186	chr11	53111863	53114661	+	0	NA	intron (NR_046047, intron 2 of 3)	intron (NR_046047, intron 2 of 3)	6794	NR_046047	790909	Mm.404626	NR_046047	ENSMUSG00000087668	Gm11186	OTTMUSG00000000039	predicted gene 11186	ncRNA	9.137	13.968	5.516	13.353	5.727	4.653	7.236	8.160	7.699	12.986	7.603	5.777	8.016	9.063	10.845	11.622	5.891	10.906	5.662	2.649	3.450	6.776	2.110	3.484	12.781
680	chr1	137581425	137588768	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-381359	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	7.678	1.960	0.496	nan	1.677	0.951	3.808	4.840	3.464	4.867	2.156	1.244	4.032	4.702	3.640	6.438	3.500	4.317	3.012	1.524	1.489	3.335	2.252	1.800	9.890
8826	chr2	153155797	153160279	+	0	NA	Intergenic	Intergenic	-3263	NM_133847	99237	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	3.104	1.680	0.608	3.279	1.824	0.577	3.003	4.852	3.429	nan	0.811	0.827	7.702	6.494	5.169	8.791	4.259	6.646	nan	0.415	0.242	0.680	0.208	0.191	7.060
8599	chr2	120790296	120791983	+	0	NA	intron (NM_001024857, intron 3 of 14)	intron (NM_001024857, intron 3 of 14)	59279	NM_001024857	140810	Mm.275698	NM_080788	ENSMUSG00000090100	Ttbk2	2610507N02Rik|AI326283|B930008N24Rik|TTK|Ttbk|Ttbk1|mKIAA0847	tau tubulin kinase 2	protein-coding	5.546	0.795	1.039	2.550	1.962	2.119	3.187	1.520	4.202	3.343	0.723	1.193	5.740	3.548	2.820	4.794	6.771	5.466	0.649	1.060	0.857	0.476	0.800	0.604	3.016
3962	chr13	34965601	34968801	+	0	NA	Intergenic	Intergenic	-3392	NM_026947	69123	Mm.482475	NM_026947	ENSMUSG00000021416	Eci3	1810022C23Rik|Kseg2	enoyl-Coenzyme A delta isomerase 3	protein-coding	8.923	9.439	4.998	9.646	7.806	5.788	7.639	8.781	nan	9.989	6.797	5.159	7.909	11.085	9.039	9.694	7.062	8.374	7.076	4.275	5.171	7.017	5.118	6.511	11.681
13190	chr7	52890400	52892416	+	0	NA	Intergenic	PB1D7|SINE|Alu	-875692	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	5.546	2.546	0.703	5.436	3.073	1.538	3.087	5.873	4.985	5.544	2.685	1.936	6.463	8.206	5.526	8.357	5.198	6.664	1.362	2.040	0.543	1.254	0.997	0.449	4.967
12089	chr6	24611643	24615818	+	0	NA	TTS (NM_028459)	TTS (NM_028459)	15959	NM_053098	93677	Mm.332941	NM_053098	ENSMUSG00000029683	Lmod2	C-Lmod	leiomodin 2 (cardiac)	protein-coding	8.441	8.371	2.772	9.581	3.916	2.117	9.734	9.952	6.336	9.249	5.477	3.979	9.485	9.752	11.056	12.796	7.071	10.042	nan	1.914	2.158	4.982	2.577	3.089	12.729
11482	chr5	100843453	100845181	+	0	NA	Intergenic	Intergenic	-1912	NM_172715	231510	Mm.271911	NM_172715	ENSMUSG00000029314	Agpat9	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|GPAT-3|Gpat3|mGPAT3	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding	7.135	5.641	1.238	6.957	3.449	1.620	7.978	7.312	5.333	7.429	6.635	4.742	6.887	7.968	9.409	8.853	6.112	8.402	5.402	2.215	1.636	4.405	3.374	2.550	7.144
7346	chr18	66664214	66666391	+	0	NA	Intergenic	L1Md_T|LINE|L1	161124	NR_040528	100503565	Mm.98256	NR_040528		Gm9926	ENSMUSG00000053891	predicted gene 9926	ncRNA	0.397	0.872	0.549	0.437	1.351	0.847	4.114	2.979	1.497	1.154	1.564	4.768	3.076	0.575	0.885	0.962	3.601	0.660	0.336	0.463	0.247	0.418	1.138	1.310	0.250
13870	chr7	147100127	147103177	+	0	NA	Intergenic	Intergenic	1786817	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	nan	nan	1.783	nan	0.097	0.173	0.507	0.351	nan	0.345	0.412	0.312	0.163	0.308	0.274	0.349	0.326	0.347	6.729	4.009	2.959	5.104	6.506	5.735	nan
15677	chrX	11734977	11737436	+	0	NA	Intergenic	Intergenic	344347	NM_175045	71458	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	4.544	6.359	1.197	5.069	1.798	1.472	4.063	4.233	2.055	4.521	2.483	0.612	2.850	3.626	3.980	4.585	3.446	3.632	3.337	1.675	2.317	5.247	1.931	2.778	8.168
15542	chr9	115214038	115220815	+	0	NA	intron (NM_148958, intron 6 of 9)	intron (NM_148958, intron 6 of 9)	64644	NR_029430	111186	Mm.484753	NR_029430		Stmn1-rs1	Lag-rs1|Lap18-rs1	stathmin 1, related sequence 1	pseudo	5.068	11.410	4.919	6.445	2.168	1.160	3.113	4.511	3.744	7.243	3.288	2.184	3.548	4.543	5.074	5.739	2.532	6.234	4.262	2.246	2.202	5.550	nan	3.391	7.842
7876	chr19	53610554	53611943	+	0	NA	intron (NM_007790, intron 2 of 28)	Lx8|LINE|L1	10852	NM_007790	13006	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	3.330	3.804	1.141	1.893	0.986	0.301	2.172	5.990	1.538	1.723	1.057	1.089	1.331	3.286	2.783	2.969	1.114	3.072	0.546	0.424	0.140	0.662	0.154	0.071	4.409
7259	chr18	56765691	56767172	+	0	NA	intron (NM_177115, intron 4 of 4)	L1M5|LINE|L1	58618	NM_010721	16906	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	2.419	nan	0.872	nan	2.563	2.339	3.987	2.679	1.280	1.017	0.286	0.332	3.771	4.042	3.041	2.140	1.928	2.701	nan	0.946	0.722	nan	1.174	1.210	1.963
2783	chr11	100563454	100565955	+	0	NA	intron (NM_028918, intron 9 of 11)	Lx8b|LINE|L1	-10235	NM_009923	12799	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	5.555	12.574	4.062	6.115	2.669	2.079	2.540	3.498	2.922	3.449	2.571	1.659	3.408	5.072	4.324	6.748	3.866	4.921	4.747	nan	2.230	4.667	nan	nan	6.539
12154	chr6	34822733	34828816	+	0	NA	intron (NM_178630, intron 13 of 18)	L1M4b|LINE|L1	-37372	NM_197986	68487	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	7.247	8.250	2.843	8.461	3.617	2.294	4.731	4.867	3.835	5.189	5.289	2.108	3.956	5.299	5.236	6.544	3.740	6.087	nan	2.398	1.867	nan	nan	1.634	6.150
13059	chr7	29170297	29175286	+	0	NA	exon (NM_182694, exon 2 of 3)	exon (NM_182694, exon 2 of 3)	2401	NM_182696	243897	Mm.389886	NM_182694	ENSMUSG00000031493	Ggn	AI593290	gametogenetin	protein-coding	2.750	3.947	1.732	3.110	2.017	1.187	5.313	5.593	1.841	1.913	1.213	0.664	4.140	3.691	2.871	3.065	1.825	3.795	0.771	0.938	1.054	0.987	0.438	1.074	2.196
14021	chr8	12607840	12615642	+	0	NA	Intergenic	Intergenic	38692	NM_024279	78634	Mm.116871	NM_024279	ENSMUSG00000010435	Spaca7	1700094C09Rik	sperm acrosome associated 7	protein-coding	0.695	0.941	0.452	0.921	0.564	0.218	0.775	0.857	1.336	1.370	0.325	0.756	0.925	1.449	1.399	1.460	0.978	1.555	7.884	5.992	3.389	13.978	4.898	2.981	1.435
334	chr1	77532003	77536377	+	0	NA	Intergenic	Intergenic	-19102	NM_007936	13838	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	11.314	0.648	0.484	1.278	2.407	1.474	7.323	2.689	3.124	2.940	1.164	0.534	7.976	4.268	3.700	nan	6.680	5.597	nan	nan	1.193	0.721	nan	0.608	3.437
13138	chr7	38720169	38722671	+	0	NA	Intergenic	Intergenic	48884	NR_073038	100861861	Mm.60620	NR_073038		Gm21276	-	predicted gene, 21276	pseudo	4.844	0.577	0.314	2.405	1.245	0.691	2.578	2.759	2.988	3.941	0.430	0.378	6.625	4.922	4.735	5.897	5.512	4.987	0.812	0.438	0.147	0.266	0.540	0.267	6.972
7735	chr19	36775494	36777723	+	0	NA	Intergenic	Intergenic	-40004	NM_016854	53412	Mm.24724	NM_016854	ENSMUSG00000067279	Ppp1r3c	PTG|Ppp1r5	protein phosphatase 1, regulatory (inhibitor) subunit 3C	protein-coding	4.468	0.812	0.528	2.563	0.822	0.250	3.060	4.331	2.857	3.105	0.634	0.601	3.171	3.345	3.421	4.173	4.143	2.813	0.332	0.726	0.188	0.852	0.412	0.208	5.479
2292	chr11	61375728	61377609	+	0	NA	intron (NM_026183, intron 1 of 16)	intron (NM_026183, intron 1 of 16)	1407	NM_026183	67473	Mm.100741	NM_026183	ENSMUSG00000010122	Slc47a1	1300013J15Rik|AI036982|MATE1|mMATE1	solute carrier family 47, member 1	protein-coding	3.317	1.867	1.343	4.348	4.502	2.424	3.442	3.611	2.898	3.007	3.637	4.649	3.267	4.433	2.301	3.731	3.001	3.629	nan	1.107	0.786	1.778	0.845	0.802	3.103
3582	chr12	87097934	87101641	+	0	NA	intron (NM_022414, intron 3 of 3)	intron (NM_022414, intron 3 of 3)	2752	NM_022414	64242	Mm.41395	NM_022414	ENSMUSG00000021032	Ngb	-	neuroglobin	protein-coding	6.035	0.575	0.459	2.264	3.051	1.938	2.823	2.017	2.128	2.765	0.405	0.500	3.934	4.043	3.133	4.128	3.623	4.252	0.670	0.777	0.697	0.656	0.472	0.564	4.060
15102	chr9	56748339	56750431	+	0	NA	Intergenic	B4A|SINE|B4	-64132	NM_181074	235402	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	3.531	1.009	0.274	2.596	3.107	2.863	4.833	6.182	2.244	1.885	4.628	4.060	3.547	4.008	4.873	3.422	2.787	4.278	6.341	4.575	4.869	6.534	6.197	5.665	3.733
1997	chr11	19823727	19827434	+	0	NA	Intergenic	Intergenic	-98862	NM_033523	114716	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	7.998	9.203	2.878	9.677	6.144	4.354	11.174	9.886	6.566	12.384	5.297	5.951	8.913	11.518	10.464	11.554	8.466	8.455	4.616	2.627	4.194	6.772	3.450	4.238	12.230
6650	chr17	45709010	45712104	+	0	NA	Intergenic	Intergenic	23287	NM_028164	72240	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	9.859	17.412	5.393	13.836	4.625	2.939	12.520	9.208	5.996	9.728	5.951	4.056	8.998	10.738	14.299	16.052	9.481	10.034	7.401	3.587	3.317	8.755	4.587	4.685	19.985
12509	chr6	97152572	97162635	+	0	NA	intron (NM_001081111, intron 15 of 16)	intron (NM_001081111, intron 15 of 16)	-8720	NM_175313	101351	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	6.165	8.243	3.967	5.810	3.364	1.922	5.177	6.110	4.642	5.091	3.700	3.887	6.353	5.989	nan	nan	6.000	6.349	nan	nan	1.311	3.113	1.577	1.382	5.952
6888	chr17	80653674	80656086	+	0	NA	intron (NM_001290345, intron 4 of 33)	Tigger5|DNA|TcMar-Tigger	73145	NM_001290345	225028	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	2.498	2.012	0.927	3.696	1.347	0.961	nan	6.578	nan	1.443	1.321	1.186	2.716	5.915	3.362	3.744	1.426	2.313	0.577	0.807	0.762	0.845	0.471	0.326	2.378
5256	chr15	63836445	63838193	+	0	NA	intron (NM_177912, intron 1 of 11)	B2_Mm2|SINE|B2	7857	NM_001168274	331063	Mm.273185	NM_177912	ENSMUSG00000056293	Gsdmc2	9130023H10|AI987692	gasdermin C2	protein-coding	nan	2.649	1.487	0.576	0.948	0.422	2.533	6.487	1.441	1.063	5.533	2.353	1.970	2.269	3.447	1.780	1.986	2.102	0.755	0.381	0.561	1.380	0.278	0.339	1.079
8400	chr2	83878347	83880683	+	0	NA	exon (NM_175514, exon 8 of 8)	exon (NM_175514, exon 8 of 8)	61711	NM_027964	71861	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	3.116	0.557	0.668	3.578	1.150	0.685	0.638	1.153	1.537	1.945	0.734	0.858	0.759	1.495	0.794	1.202	1.453	2.904	0.509	0.847	0.518	0.333	0.373	0.205	0.787
12436	chr6	89816249	89819095	+	0	NA	Intergenic	L1_Mus3|LINE|L1	27943	NM_053221	113848	Mm.349358	NM_053221	ENSMUSG00000068232	Vmn1r42	V1ra1|V1ra3|V1ra6	vomeronasal 1 receptor 42	protein-coding	6.611	0.806	0.455	1.849	4.735	2.416	3.661	2.862	2.263	2.685	4.090	1.347	3.921	5.600	2.523	1.947	1.527	4.357	nan	0.260	0.215	0.395	0.212	0.190	2.873
1680	chr10	98659112	98662541	+	0	NA	Intergenic	Intergenic	-254326	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	4.118	3.611	1.841	1.693	3.561	2.156	5.755	3.459	2.784	2.822	nan	1.618	3.203	4.372	4.151	3.128	2.620	3.160	4.133	2.220	1.998	nan	3.823	2.845	4.181
2879	chr11	105794275	105797987	+	0	NA	intron (NM_181071, intron 6 of 25)	intron (NM_181071, intron 6 of 25)	148016	NM_007805	13056	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	6.080	1.322	0.428	5.920	3.453	1.747	5.022	5.799	6.146	8.237	4.058	1.915	6.594	8.351	6.102	6.922	4.304	7.322	2.142	1.869	1.381	nan	1.304	1.002	6.740
5984	chr16	30827604	30828738	+	0	NA	Intergenic	Intergenic	228448	NM_177632	224093	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	3.123	1.895	0.752	3.710	1.780	0.719	2.653	4.687	2.920	3.536	1.472	1.666	4.082	3.784	3.252	4.331	1.015	2.726	0.672	0.832	0.540	1.242	nan	0.552	5.321
5847	chr16	18588371	18591883	+	0	NA	intron (NM_001285472, intron 1 of 8)	intron (NM_001285472, intron 1 of 8)	544	NM_001285472	21380	Mm.295194	NM_011532	ENSMUSG00000009097	Tbx1	-	T-box 1	protein-coding	0.774	1.894	0.579	2.793	0.462	0.249	0.780	0.866	1.935	nan	4.603	4.468	0.730	1.423	1.648	2.276	0.747	1.736	7.144	3.012	3.158	7.453	5.502	4.049	2.136
4043	chr13	43625790	43627948	+	0	NA	intron (NM_183204, intron 1 of 1)	L1VL2|LINE|L1	11072	NM_183204	328234	Mm.40588	NM_183204	ENSMUSG00000044164	Rnf182	C630023L15Rik	ring finger protein 182	protein-coding	4.328	1.881	0.524	4.032	2.557	2.052	2.425	2.963	2.647	2.699	0.926	0.977	2.689	4.547	3.470	3.724	2.032	3.422	5.737	nan	2.912	7.551	5.278	2.884	4.653
5995	chr16	31591660	31594213	+	0	NA	Intergenic	Intergenic	-70507	NM_001252435	13383	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs, large homolog 1 (Drosophila)	protein-coding	11.985	1.364	0.511	6.494	3.396	1.793	9.067	10.845	7.378	7.182	7.809	3.463	9.931	10.798	11.611	13.476	7.451	10.482	2.502	0.855	0.659	3.399	nan	0.632	16.138
2454	chr11	74768013	74769134	+	0	NA	Intergenic	B3|SINE|B2	-2290	NM_026197	67493	Mm.45748	NM_026197	ENSMUSG00000010554	Mettl16	2610100D03Rik|2810013M15Rik|A830095F14Rik|AI846133|Mett10d	methyltransferase like 16	protein-coding	2.694	3.130	2.160	1.358	2.441	1.759	6.117	6.091	2.760	2.386	3.828	4.344	5.283	4.149	2.473	3.494	2.092	2.578	2.310	1.975	nan	1.158	4.154	2.519	1.271
2077	chr11	33042391	33044437	+	0	NA	Intergenic	L1_Rod|LINE|L1	103986	NM_008005	14172	Mm.339812	NM_008005	ENSMUSG00000057967	Fgf18	D130055P09Rik|FGF-18	fibroblast growth factor 18	protein-coding	1.471	0.664	0.284	1.556	1.101	0.361	1.635	0.660	1.291	1.966	0.452	0.196	1.691	3.941	1.360	nan	0.843	3.009	0.429	0.294	0.562	0.586	0.367	0.313	2.589
2036	chr11	23624929	23627044	+	0	NA	intron (NM_027860, intron 3 of 21)	L1_Mus1|LINE|L1	7645	NM_001347242	71675	Mm.48031	NM_027860	ENSMUSG00000042208	0610010F05Rik	Kiaa1841|mKIAA1841	RIKEN cDNA 0610010F05 gene	protein-coding	0.875	1.032	0.481	nan	0.364	0.644	0.587	0.862	1.127	0.465	5.993	2.254	0.505	0.334	0.551	1.152	nan	1.483	0.643	0.283	0.348	0.366	0.449	0.211	0.540
11292	chr5	66317072	66328862	+	0	NA	intron (NM_001310626, intron 10 of 15)	(TG)n|Simple_repeat|Simple_repeat	14698	NM_001201416	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0.979	9.674	5.939	1.106	0.511	0.353	0.566	0.600	0.914	0.960	0.571	0.580	0.332	0.514	0.843	0.919	0.630	0.909	0.708	1.144	1.089	nan	0.530	0.408	0.818
8452	chr2	91933549	91935680	+	0	NA	intron (NM_001166597, intron 28 of 31)	intron (NM_001166597, intron 28 of 31)	-2317	NM_010784	17242	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	4.145	0.486	0.503	1.846	2.491	1.217	3.759	3.159	1.702	2.555	0.584	0.717	4.534	4.884	2.584	2.961	5.434	3.120	0.915	0.402	0.690	0.353	0.950	0.552	2.567
7833	chr19	46601862	46611147	+	0	NA	intron (NM_146099, intron 1 of 3)	intron (NM_146099, intron 1 of 3)	7398	NM_146099	226178	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	2.313	2.532	1.170	nan	1.798	0.940	3.046	3.245	2.151	2.423	3.367	3.007	2.134	4.183	4.234	3.856	3.329	nan	3.816	3.182	2.972	7.980	5.160	5.037	4.627
10266	chr4	89140880	89147443	+	0	NA	intron (NM_024433, intron 1 of 7)	ORR1A2|LTR|ERVL-MaLR	6791	NM_024433	66902	Mm.28500	NM_024433	ENSMUSG00000062937	Mtap	1300019I21Rik|MSAP	methylthioadenosine phosphorylase	protein-coding	2.086	nan	0.560	1.156	1.893	0.994	3.157	nan	nan	2.121	4.484	3.228	2.339	4.686	2.098	1.655	1.362	nan	1.042	nan	0.710	0.782	1.090	0.526	nan
5588	chr15	96154226	96158589	+	0	NA	Intergenic	RLTR12A|LTR|ERVK	-26393	NR_028311	100043335	Mm.247464	NR_028311		Gm4371	EG667874|Gm8854	eukaryotic translation initiation factor 3, subunit I pseudogene	pseudo	7.462	0.955	0.637	4.422	1.982	0.913	7.910	10.303	5.361	6.886	2.048	0.751	11.335	8.133	7.412	7.797	9.252	7.667	2.256	1.255	0.394	1.929	1.404	0.787	6.664
8468	chr2	101553077	101557658	+	0	NA	Intergenic	B3|SINE|B2	-69381	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	nan	0.641	0.617	2.999	1.723	1.238	4.536	3.189	2.834	3.509	0.620	0.547	6.301	5.779	4.779	7.207	7.921	6.687	0.795	0.506	0.428	0.574	0.372	0.544	6.489
12419	chr6	88143506	88149274	+	0	NA	Intergenic	RLTR20A4|LTR|ERVK	-42132	NR_105795	102465196		NR_105795	ENSMUSG00000099095	Mir6376	Gm27778|mmu-mir-6376	microRNA 6376	ncRNA	2.291	0.598	0.291	nan	1.018	0.506	1.021	1.219	2.334	3.744	0.662	0.529	0.801	2.256	1.686	2.649	0.965	3.833	nan	0.410	0.468	1.089	0.553	0.504	3.518
10412	chr4	116871744	116876437	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-3312	NM_001029912	74464	Mm.218946	NM_001029912	ENSMUSG00000033948	Zswim5	4933426E21Rik|AI503093|mKIAA1511	zinc finger SWIM-type containing 5	protein-coding	6.942	7.544	5.497	5.126	10.690	8.565	8.527	6.872	5.684	4.769	2.632	2.628	7.378	8.234	6.469	nan	8.202	6.348	3.720	2.854	2.324	1.519	2.970	3.118	5.626
15718	chrX	45329550	45331107	+	0	NA	Intergenic	(TAA)n|Simple_repeat|Simple_repeat	239424	NM_026841	68800	Mm.336041	NM_026841	ENSMUSG00000037086	Prr32	1110059M19Rik	proline rich 32	protein-coding	2.979	0.529	0.258	1.014	1.989	1.060	2.595	1.867	0.967	1.589	1.142	1.147	1.896	4.688	2.339	2.771	2.726	1.580	0.407	0.486	0.157	0.275	0.475	0.060	2.573
12455	chr6	91074474	91076084	+	0	NA	intron (NM_018815, intron 8 of 39)	intron (NM_018815, intron 8 of 39)	41547	NM_018815	54563	Mm.28162	NM_018815	ENSMUSG00000030091	Nup210	9830001L10|AI836801|Pom210|gp190|gp210	nucleoporin 210	protein-coding	1.775	4.780	1.594	nan	0.907	1.356	0.996	1.035	1.437	1.830	0.366	0.434	1.480	3.915	2.085	2.698	1.212	nan	nan	0.886	0.801	1.380	0.379	0.675	1.643
10573	chr4	129486335	129489670	+	0	NA	3' UTR (NM_133889, exon 11 of 11)	3' UTR (NM_133889, exon 11 of 11)	2768	NM_080442	58864	Mm.143802	NM_080442	ENSMUSG00000000411	Tssk3	1700014N07Rik|4930594I21Rik|Stk22c|Stk22d|Tsk-3|Tssk-3|Tssk3b	testis-specific serine kinase 3	protein-coding	6.293	13.258	6.146	8.190	10.108	7.582	8.798	5.038	6.145	6.212	6.014	3.794	6.343	7.818	7.210	8.061	3.523	7.820	1.175	1.757	2.140	1.049	0.991	1.027	7.621
1552	chr10	84959484	84968770	+	0	NA	intron (NM_001013441, intron 4 of 8)	L2a|LINE|L2	46514	NM_183172	237422	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	nan	1.826	1.022	0.541	0.391	0.294	0.443	0.462	0.543	0.526	1.012	0.581	0.252	nan	0.420	0.748	0.475	nan	1.608	1.300	0.993	4.838	nan	1.390	0.840
1194	chr10	25122522	25128467	+	0	NA	Intergenic	Intergenic	74676	NM_001347460	432442	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	nan	7.395	4.570	1.364	0.750	0.182	0.808	0.620	1.061	0.918	0.493	0.774	0.403	0.790	0.682	0.934	0.649	1.191	0.654	0.977	0.312	0.512	0.566	0.423	0.736
7271	chr18	58004138	58007116	+	0	NA	Intergenic	Intergenic	126949	NM_009194	20496	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	6.185	nan	0.726	nan	4.824	3.278	5.870	4.820	3.498	4.144	2.390	1.986	7.113	6.498	4.178	4.696	5.760	5.074	nan	1.064	1.279	nan	1.492	0.812	3.924
4433	chr13	114403550	114409443	+	0	NA	Intergenic	Intergenic	-18402	NM_010887	17993	Mm.253142	NM_010887	ENSMUSG00000021764	Ndufs4	6720411N02Rik|C1-18k	NADH dehydrogenase (ubiquinone) Fe-S protein 4	protein-coding	8.255	8.342	2.081	10.894	5.125	2.834	4.006	6.807	4.549	8.872	4.143	2.152	6.247	10.454	9.076	6.693	2.744	9.116	1.859	1.106	1.044	2.940	0.988	1.225	10.576
41	chr1	20605972	20609419	+	0	NA	intron (NM_153179, intron 5 of 66)	MTB|LTR|ERVL-MaLR	10362	NM_153179	241035	Mm.249253	NM_153179	ENSMUSG00000043760	Pkhd1	AI118496|AI182499|FPC|Tigm1	polycystic kidney and hepatic disease 1	protein-coding	4.763	0.530	0.446	1.354	2.478	1.268	8.310	5.190	2.590	1.590	0.795	1.302	8.075	6.979	6.974	5.566	3.380	4.910	0.455	0.353	0.185	0.287	0.353	0.361	1.907
8934	chr2	163027842	163030410	+	0	NA	intron (NM_172150, intron 6 of 12)	Lx5b|LINE|L1	11654	NM_172150	245866	Mm.34034	NM_172150	ENSMUSG00000017858	Ift52	BC037708|NGD5	intraflagellar transport 52	protein-coding	1.639	9.185	2.415	5.831	0.551	0.339	0.185	0.720	1.784	3.058	0.522	0.366	0.413	nan	1.065	1.825	0.344	nan	nan	0.666	0.952	1.253	2.001	1.558	2.296
3084	chr11	119667736	119670200	+	0	NA	intron (NM_028898, intron 2 of 33)	Charlie1a|DNA|hAT-Charlie	66063	NM_028898	74370	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	5.606	3.067	0.780	6.631	2.180	1.028	3.249	4.806	4.334	4.078	4.671	4.248	3.945	4.643	4.751	4.699	2.144	5.090	2.136	nan	0.249	1.472	1.681	0.768	4.848
2887	chr11	106019522	106023341	+	0	NA	intron (NM_001037712, intron 8 of 12)	intron (NM_001037712, intron 8 of 12)	13228	NM_001037712	192775	Mm.343850	NM_001037712	ENSMUSG00000001901	Kcnh6	m-erg2	potassium voltage-gated channel, subfamily H (eag-related), member 6	protein-coding	6.058	22.712	6.546	9.763	2.763	1.865	6.004	5.668	nan	9.200	4.432	2.360	5.648	8.168	6.923	8.840	4.596	6.764	4.109	2.308	3.763	5.966	3.152	3.100	10.886
13706	chr7	127881364	127884236	+	0	NA	exon (NM_172749, exon 2 of 3)	exon (NM_172749, exon 2 of 3)	5099	NM_172749	233905	Mm.491243	NM_172749	ENSMUSG00000049739	Zfp646	6820429M01	zinc finger protein 646	protein-coding	1.128	1.036	0.325	1.459	0.808	0.430	1.891	nan	0.711	1.136	0.493	0.401	1.557	2.560	3.351	4.628	1.992	1.288	1.338	0.935	0.926	3.277	0.652	0.438	5.735
14800	chr8	128914755	128916046	+	0	NA	Intergenic	Intergenic	150092	NM_029061	74703	Mm.196017	NM_029061	ENSMUSG00000025808	Ccdc7a	4930517G15Rik|4930540C21Rik|Biot2|Ccdc7	coiled-coil domain containing 7A	protein-coding	1.741	nan	0.543	nan	0.592	0.593	nan	2.437	0.931	1.044	5.646	0.879	1.093	3.259	2.171	2.779	1.758	nan	nan	0.737	0.689	nan	0.896	nan	1.546
12412	chr6	87760075	87762483	+	0	NA	Intergenic	Intergenic	-16857	NM_018762	54368	Mm.12897	NM_018762	ENSMUSG00000030054	Gp9	Cd42|GPIX	glycoprotein 9 (platelet)	protein-coding	10.204	17.018	5.748	11.263	4.826	3.132	8.670	13.860	5.201	11.886	4.743	3.010	7.891	12.684	9.871	12.958	9.095	7.310	3.136	3.007	2.617	3.844	3.532	3.428	14.287
9458	chr3	89017277	89024243	+	0	NA	intron (NM_138679, intron 4 of 26)	intron (NM_138679, intron 4 of 26)	54948	NM_138679	192195	Mm.130752	NM_138679	ENSMUSG00000028053	Ash1l	8030453L17Rik|Ash1|E430018P19Rik|Kmt2h	ash1 (absent, small, or homeotic)-like (Drosophila)	protein-coding	3.452	2.514	0.766	5.416	2.695	1.505	6.570	2.049	2.953	5.659	1.578	0.983	6.266	6.666	5.979	8.022	5.875	5.961	nan	1.325	0.956	2.232	1.674	1.304	10.312
10721	chr4	135728662	135746923	+	0	NA	intron (NM_178257, intron 4 of 6)	intron (NM_178257, intron 4 of 6)	9633	NM_178257	230828	Mm.261647	NM_178257	ENSMUSG00000037157	Il22ra1	9130219A07Rik|ENSMUSG00000073746|IL-22R|Il22r	interleukin 22 receptor, alpha 1	protein-coding	4.798	9.893	3.831	6.505	4.870	2.920	4.763	3.843	nan	4.284	2.494	1.932	3.886	7.696	5.055	5.258	3.401	nan	3.501	2.533	2.281	4.358	nan	4.205	7.287
12894	chr6	149255553	149263437	+	0	NA	Intergenic	Intergenic	-49919	NM_001289661	67246	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	8.315	5.731	2.282	6.439	7.957	4.527	6.148	4.493	4.690	6.092	5.372	2.568	6.797	8.709	5.702	6.676	4.860	7.250	2.338	nan	1.120	nan	1.509	1.374	5.386
14994	chr9	42922748	42924883	+	0	NA	intron (NM_175481, intron 1 of 20)	intron (NM_175481, intron 1 of 20)	20556	NM_175481	110637	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	3.385	3.527	1.225	3.259	0.579	0.923	2.015	3.879	2.136	3.488	1.315	2.150	4.789	4.482	3.270	4.449	nan	3.319	nan	0.854	0.693	1.999	0.607	0.668	3.388
9612	chr3	101399008	101411915	+	0	NA	intron (NM_207205, intron 2 of 10)	intron (NM_207205, intron 2 of 10)	28336	NM_207205	78908	Mm.257997	NM_207205	ENSMUSG00000042035	Igsf3	1700016K10Rik|2810035F16Rik|4833439O17Rik|mKIAA0466	immunoglobulin superfamily, member 3	protein-coding	6.353	3.546	1.440	6.702	4.881	2.743	6.237	6.173	5.515	7.459	nan	3.132	6.493	9.046	7.405	nan	5.238	8.365	2.825	1.620	1.268	3.293	2.288	1.972	7.405
9115	chr2	180921998	180924684	+	0	NA	Intergenic	Intergenic	-2405	NM_173761	228994	Mm.30205	NM_173761	ENSMUSG00000038848	Ythdf1	2210410K23Rik|8030473O16	YTH domain family 1	protein-coding	7.791	12.842	3.097	8.062	3.642	2.003	8.761	12.499	5.657	7.661	5.163	4.095	9.239	9.010	9.028	11.812	6.883	9.034	2.778	1.312	1.406	3.315	1.513	2.286	15.889
2223	chr11	54926718	54928006	+	0	NA	intron (NM_001199275, intron 9 of 18)	L1MC4a|LINE|L1	24508	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	5.878	5.333	3.099	2.085	3.172	3.159	1.822	3.559	2.001	3.331	2.924	1.398	1.457	2.900	2.875	2.602	3.239	1.798	nan	2.662	2.401	0.618	1.399	1.271	nan
15053	chr9	48528489	48534413	+	0	NA	Intergenic	MT2B1|LTR|ERVL	36108	NM_001004191	434402	Mm.386950	NM_001004191	ENSMUSG00000042293	Gm5617	EG434402	predicted gene 5617	protein-coding	5.830	5.649	3.095	8.278	4.146	2.287	0.972	4.111	4.157	6.163	1.794	0.705	2.736	6.333	nan	nan	1.341	7.517	1.312	1.734	1.181	nan	2.176	1.294	3.527
14028	chr8	12762831	12764292	+	0	NA	intron (NR_121603, intron 1 of 29)	intron (NR_121603, intron 1 of 29)	6545	NM_001293667	50770	Mm.257837	NM_015804	ENSMUSG00000031441	Atp11a	4930558F19Rik|AU040868|Atpc1h|Ih	ATPase, class VI, type 11A	protein-coding	3.406	2.262	1.255	4.909	4.825	4.232	2.730	4.729	3.392	3.538	0.773	0.609	3.743	4.378	4.423	5.243	3.422	5.762	1.280	1.162	1.138	1.712	0.790	1.303	6.865
8502	chr2	103253259	103257014	+	0	NA	Intergenic	L1M2|LINE|L1	48060	NM_007914	13661	Mm.10724	NM_007914	ENSMUSG00000012350	Ehf	9030625L19Rik|AU019492	ets homologous factor	protein-coding	3.684	0.606	0.514	1.706	0.884	0.728	3.633	3.113	2.124	3.396	0.450	0.205	3.714	5.303	5.564	5.926	5.574	3.303	1.221	1.284	0.783	nan	0.562	0.375	7.830
3532	chr12	81928116	81941881	+	0	NA	intron (NM_018814, intron 8 of 35)	intron (NM_018814, intron 8 of 35)	74968	NM_018814	54604	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog (Drosophila)	protein-coding	5.641	1.753	1.122	3.914	4.532	2.647	2.790	2.862	3.745	3.325	4.268	1.691	3.556	nan	3.508	nan	3.224	5.172	1.573	1.504	1.078	2.044	1.297	1.111	3.423
3380	chr12	70534939	70541533	+	0	NA	intron (NR_037248, intron 2 of 4)	intron (NR_037248, intron 2 of 4)	85082	NM_028339	72736	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	6.676	1.308	0.923	3.642	6.206	5.089	8.548	4.004	5.556	5.946	5.220	4.970	8.230	9.451	7.054	7.629	8.572	6.182	1.211	2.568	2.182	1.550	1.536	1.309	7.634
11711	chr5	124599355	124608282	+	0	NA	exon (NM_026486, exon 5 of 19)	exon (NM_026486, exon 5 of 19)	5069	NM_026486	67978	Mm.1158	NM_026486		Tctn2	4432405B04Rik|Tect2	tectonic family member 2	protein-coding	4.914	0.735	0.503	4.151	3.951	3.224	8.533	2.173	5.049	6.710	1.406	0.675	7.777	7.508	7.147	7.026	6.198	6.345	nan	1.066	1.173	1.547	nan	1.247	nan
11926	chr5	144752450	144756593	+	0	NA	intron (NM_177735, intron 2 of 7)	RSINE1|SINE|B4	7057	NM_177735	243339	Mm.126793	NM_177735	ENSMUSG00000043388	Tmem130	BC067004|C130036G08	transmembrane protein 130	protein-coding	5.714	0.964	0.284	5.191	3.833	2.080	4.561	5.242	5.464	8.288	1.177	1.132	6.243	10.557	7.633	7.695	4.639	8.453	1.493	0.855	0.503	0.604	0.965	0.528	7.357
9058	chr2	169971211	169976833	+	0	NA	Intergenic	L1MB7|LINE|L1	-10835	NR_131974	446211	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	4.961	3.473	2.525	3.979	4.802	4.736	5.683	5.991	4.130	3.265	2.528	3.042	5.755	6.136	4.544	5.210	5.680	4.306	nan	1.689	2.414	1.533	2.007	2.094	3.208
4292	chr13	95903415	95907152	+	0	NA	Intergenic	ID2|SINE|ID	-13361	NM_027711	544963	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	1.025	0.598	0.582	1.410	0.946	0.562	0.682	0.850	1.089	1.039	0.405	0.485	0.709	1.130	0.831	1.014	nan	nan	5.873	3.182	1.973	4.978	4.450	3.349	1.177
10842	chr4	141776826	141778630	+	0	NA	intron (NM_172338, intron 4 of 14)	B2_Mm2|SINE|B2	12916	NM_172338	214063	Mm.39102	NM_172338	ENSMUSG00000040697	Dnajc16	2900037O03Rik|4732437J24Rik|D030060M24|mKIAA0962	DnaJ heat shock protein family (Hsp40) member C16	protein-coding	2.798	1.193	0.210	2.763	0.427	0.186	3.019	2.389	nan	1.850	1.419	1.323	2.603	1.672	3.315	4.045	1.802	4.715	0.895	0.339	0.164	1.219	nan	0.416	5.386
1097	chr10	12410685	12415853	+	0	NA	intron (NM_011682, intron 68 of 73)	B4A|SINE|B4	448466	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	5.485	0.568	0.589	2.305	4.150	2.937	3.497	4.286	2.672	2.607	1.463	1.345	4.084	5.852	3.016	3.577	5.378	3.918	0.783	0.762	0.522	0.434	0.780	0.570	3.137
5964	chr16	29661484	29664325	+	0	NA	Intergenic	Intergenic	83570	NM_001199177	74143	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	5.384	0.526	0.492	2.599	7.764	4.784	6.172	7.045	4.086	5.067	3.457	3.151	6.014	10.805	8.119	9.468	4.133	5.474	1.517	1.201	0.909	1.832	nan	1.250	6.164
838	chr1	167122682	167126063	+	0	NA	Intergenic	Intergenic	122955	NM_001160261	226610	Mm.389217	NM_175461	ENSMUSG00000060568	Fam78b	C030014K22Rik|C030020L09Rik	family with sequence similarity 78, member B	protein-coding	10.443	9.389	3.227	nan	3.175	1.890	5.812	7.542	5.806	7.902	5.133	3.905	8.264	7.625	7.900	11.336	5.443	9.451	2.769	1.444	1.435	4.484	nan	1.405	9.300
2664	chr11	94774634	94779675	+	0	NA	TTS (NM_001034896)	TTS (NM_001034896)	5549	NM_001034896	544806	Mm.379774	NM_001034896	ENSMUSG00000075610	Tmem92	AU016430|Tmem92-ps	transmembrane protein 92	protein-coding	4.337	nan	0.343	2.833	3.968	2.308	5.593	5.124	3.227	4.692	1.518	0.870	4.636	8.289	4.333	5.961	3.447	4.263	0.738	nan	0.961	1.022	nan	nan	5.631
8187	chr2	35436373	35439763	+	0	NA	intron (NM_001308300, intron 1 of 6)	intron (NM_001308300, intron 1 of 6)	23381	NM_001308299	14594	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	5.829	0.987	0.153	5.935	3.070	1.546	5.223	6.569	3.239	7.988	1.053	1.792	8.054	9.472	7.351	11.035	6.657	6.919	2.820	1.741	1.410	3.171	1.841	1.774	15.151
8461	chr2	93027820	93034101	+	0	NA	intron (NR_110333, intron 4 of 5)	intron (NR_110333, intron 4 of 5)	1612	NR_110333	433456	Mm.235231	NM_001002794	ENSMUSG00000075027	4631405J19Rik	-	RIKEN cDNA 4631405J19 gene	ncRNA	nan	16.553	5.325	3.979	0.950	0.392	0.833	1.450	2.283	3.108	1.358	2.067	0.746	1.135	1.684	2.301	1.273	3.183	6.164	2.532	2.210	2.808	3.962	3.923	4.333
5019	chr15	6682202	6683383	+	0	NA	Intergenic	MuRRS-int|LTR|ERV1	-25589	NM_030168	78757	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	4.512	1.245	0.302	2.644	2.639	0.639	1.863	5.699	3.356	3.351	1.183	0.517	2.917	4.078	3.741	3.095	2.107	3.926	0.742	0.148	0.071	0.464	0.305	0.015	2.150
1121	chr10	18460521	18463830	+	0	NA	intron (NM_173390, intron 1 of 6)	intron (NM_173390, intron 1 of 6)	-7806	NM_001163592	215819	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	6.866	1.091	0.498	4.421	3.798	1.489	2.627	3.294	3.968	4.528	0.352	0.569	5.940	7.536	7.244	9.327	5.658	7.496	2.837	1.323	0.921	3.658	2.471	1.666	10.076
8081	chr2	30094862	30099108	+	0	NA	TTS (NM_178694)	TTS (NM_178694)	-3350	NM_001037762	66220	Mm.22538	NM_025428	ENSMUSG00000015335	Zdhhc12	1190004A01Rik	zinc finger, DHHC domain containing 12	protein-coding	5.098	2.273	0.701	7.043	2.441	1.989	2.427	5.895	nan	3.198	2.521	2.878	2.716	4.136	2.932	3.998	2.676	5.015	1.056	1.221	1.185	1.426	0.954	0.985	4.772
4245	chr13	73885938	73891151	+	0	NA	Intergenic	Intergenic	-40913	NM_001347535	72293	Mm.45506	NM_028186	ENSMUSG00000021567	Nkd2	2210403L10Rik|AW212591|mNkd2	naked cuticle 2 homolog (Drosophila)	protein-coding	2.086	1.787	0.643	2.499	1.268	0.779	3.186	2.809	3.234	2.723	3.772	1.879	4.230	4.752	3.949	4.684	2.110	3.817	1.695	1.160	0.690	1.780	1.150	1.133	2.363
9087	chr2	174641935	174652918	+	0	NA	intron (NM_001099328, intron 1 of 4)	intron (NM_001099328, intron 1 of 4)	3892	NM_001099328	100043757	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	ENSMUSG00000050600|OTTMUSG00000017459	zinc finger protein 831	protein-coding	1.001	0.497	0.277	0.632	0.688	0.422	0.854	0.905	0.781	0.963	0.219	0.213	1.144	1.562	0.797	nan	1.009	nan	4.118	3.435	2.013	3.819	4.141	2.952	nan
6493	chr17	29180482	29188827	+	0	NA	intron (NM_153166, intron 9 of 20)	intron (NM_153166, intron 9 of 20)	49598	NM_001002786	442827	Mm.440341	NM_001002786	ENSMUSG00000064147	Rab44	9830134C10Rik	RAB44, member RAS oncogene family	protein-coding	3.058	1.641	0.740	2.052	3.121	2.730	6.718	6.773	3.156	3.720	1.446	1.603	5.136	4.754	4.611	5.969	4.951	3.317	1.945	1.492	1.419	2.155	2.145	2.007	4.084
896	chr1	174077524	174080506	+	0	NA	Intergenic	Intergenic	9715	NM_146718	258713	Mm.377649	NM_146718	ENSMUSG00000050134	Olfr430	MOR105-5P	olfactory receptor 430	protein-coding	14.726	10.573	4.547	10.501	7.535	3.882	12.856	9.813	8.597	11.041	8.934	5.549	13.252	12.629	11.526	16.631	12.513	11.322	5.154	3.761	2.800	5.892	4.183	3.593	14.021
3530	chr12	81910714	81911590	+	0	NA	intron (NM_018814, intron 3 of 35)	B1F2|SINE|Alu	51122	NM_018814	54604	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog (Drosophila)	protein-coding	4.496	4.413	3.848	2.909	4.298	2.250	1.589	1.579	2.738	2.905	3.599	2.570	2.412	3.541	2.795	2.315	1.846	3.929	1.596	1.941	0.559	1.199	1.631	0.852	2.697
9896	chr4	3604708	3607340	+	0	NA	intron (NM_054089, intron 12 of 12)	intron (NM_054089, intron 12 of 12)	31145	NM_054089	116940	Mm.171323	NM_054089	ENSMUSG00000028233	Tgs1	D4Ertd800e|Ncoa6ip|Pimt	trimethylguanosine synthase 1	protein-coding	7.787	14.626	5.781	11.137	2.813	3.082	2.144	6.163	5.259	8.592	5.033	2.559	3.710	6.058	5.649	6.142	2.782	7.954	1.160	nan	2.354	1.051	1.293	1.192	8.356
5539	chr15	85836632	85839629	+	0	NA	intron (NM_001033337, intron 4 of 13)	intron (NM_001033337, intron 4 of 13)	5826	NM_001033337	239570	Mm.151748	NM_001033337	ENSMUSG00000035944	Ttc38	9030019H09	tetratricopeptide repeat domain 38	protein-coding	3.409	5.415	3.072	nan	2.917	2.061	nan	nan	nan	1.796	1.623	1.533	3.852	3.139	nan	nan	3.557	3.723	nan	1.003	1.386	nan	1.351	1.115	6.018
15110	chr9	56977280	56979498	+	0	NA	intron (NM_178374, intron 7 of 8)	B2_Mm2|SINE|B2	-16579	NM_019651	56294	Mm.325643	NM_019651	ENSMUSG00000032290	Ptpn9	MEG2	protein tyrosine phosphatase, non-receptor type 9	protein-coding	6.304	11.757	2.807	8.757	2.368	1.385	4.112	5.633	4.718	6.865	4.581	3.007	4.483	6.248	6.758	7.816	2.579	7.750	5.245	2.654	1.485	5.852	2.515	2.231	10.975
3672	chr12	103758056	103761094	+	0	NA	Intergenic	L1Md_F2|LINE|L1	14058	NM_009246	20703	Mm.439695	NM_009246	ENSMUSG00000071177	Serpina1d	AI118301|Dom4|PI4|Spi1-4	serine (or cysteine) peptidase inhibitor, clade A, member 1D	protein-coding	5.513	0.689	0.644	3.008	2.246	1.670	3.529	3.207	nan	nan	0.475	0.603	4.571	5.677	4.305	6.288	7.064	4.829	4.113	3.543	3.401	6.608	3.261	2.744	9.485
9040	chr2	167782885	167799459	+	0	NA	Intergenic	Intergenic	99995	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	3.966	5.020	2.260	3.583	2.399	1.252	2.467	4.602	3.048	3.726	2.283	1.247	3.221	nan	3.458	3.573	2.362	4.655	nan	2.007	1.652	6.207	1.984	1.666	nan
13351	chr7	86516732	86518348	+	0	NA	Intergenic	MTE-int|LTR|ERVL-MaLR	-9219	NM_146618	258611	Mm.271464	NM_146618	ENSMUSG00000057067	Olfr297	MOR220-3	olfactory receptor 297	protein-coding	1.154	0.699	0.467	1.133	0.999	0.457	1.362	1.299	nan	1.801	0.706	0.307	1.740	3.547	1.427	nan	1.890	nan	0.534	0.580	0.227	nan	0.449	0.423	1.433
8143	chr2	32566601	32569553	+	0	NA	3' UTR (NM_153560, exon 11 of 11)	3' UTR (NM_153560, exon 11 of 11)	-2781	NM_010073	13481	Mm.22001	NM_010073	ENSMUSG00000026810	Dpm2	AW557993|R75484	dolichol-phosphate (beta-D) mannosyltransferase 2	protein-coding	9.489	13.743	4.529	11.272	6.393	6.633	8.003	10.216	4.557	12.126	6.098	3.376	8.146	8.785	8.733	11.467	7.281	8.009	4.517	2.305	4.780	5.763	3.473	6.764	16.924
6470	chr17	28166023	28174756	+	0	NA	intron (NM_001004366, intron 21 of 21)	B1F|SINE|Alu	-7029	NM_172617	224656	Mm.267359	NM_172617	ENSMUSG00000024220	Zfp523	2810027J07|BC025615|Znf76	zinc finger protein 523	protein-coding	2.912	1.183	0.351	5.881	2.147	1.481	4.026	2.530	3.162	3.281	3.499	1.373	3.472	4.107	4.315	5.717	3.568	5.274	0.915	0.651	0.702	1.617	0.805	0.796	6.614
15729	chrX	53713309	53717825	+	0	NA	intron (NR_110489, intron 2 of 6)	intron (NR_110489, intron 2 of 6)	1011	NR_110489	331578	Mm.483375	NR_110489	ENSMUSG00000085998	AW822252	C230063B02	expressed sequence AW822252	ncRNA	4.130	1.112	0.737	3.158	5.325	3.495	4.457	4.194	2.660	4.495	0.691	0.738	4.163	5.731	5.096	5.700	4.512	4.328	3.631	2.552	3.106	2.362	4.246	4.632	4.033
14516	chr8	107057734	107059913	+	0	NA	non-coding (NR_028367, exon 4 of 4)	non-coding (NR_028367, exon 4 of 4)	1946	NR_028367	66164	Mm.334789	NM_025391	ENSMUSG00000031917	Nip7	1110017C15Rik|6330509M23Rik|AA408773|AA410017|PEachy	NIP7, nucleolar pre-rRNA processing protein	protein-coding	7.452	8.757	2.452	9.487	3.369	2.050	3.952	7.950	5.313	8.511	4.925	3.179	6.947	6.202	9.533	11.467	5.472	9.657	5.540	1.996	2.505	9.815	2.534	2.457	12.211
4310	chr13	98051624	98053770	+	0	NA	intron (NM_012026, intron 5 of 35)	intron (NM_012026, intron 5 of 35)	153468	NM_012026	110596	Mm.252718	NM_012026	ENSMUSG00000021662	Arhgef28	9230110L08Rik|AI323540|D13Bwg1089e|RIP2|Rgnef|RhoGEF|Rhoip2|p190RhoGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding	4.790	0.432	0.366	2.011	2.274	1.457	6.878	3.647	3.488	3.547	1.324	1.324	3.561	6.116	5.419	5.207	2.835	nan	1.098	0.711	0.491	1.261	0.808	0.551	4.860
9341	chr3	60085223	60086643	+	0	NA	intron (NM_032400, intron 1 of 1)	intron (NM_032400, intron 1 of 1)	4064	NM_032400	84112	Mm.125110	NM_032400	ENSMUSG00000027762	Sucnr1	Gpr91	succinate receptor 1	protein-coding	3.050	0.563	0.196	1.861	1.572	0.347	2.793	2.458	5.432	5.614	0.871	0.492	4.050	4.027	2.587	3.346	4.288	5.055	1.178	0.270	0.173	0.647	0.124	0.139	1.008
5045	chr15	10676790	10679337	+	0	NA	intron (NM_001166408, intron 2 of 17)	MER2|DNA|TcMar-Tigger	35477	NM_030690	75646	Mm.212395	NM_030690	ENSMUSG00000022246	Rai14	1700008J19Rik|1700020L11Rik|Ankycorbin|Norpeg|mKIAA1334	retinoic acid induced 14	protein-coding	4.121	1.349	0.614	3.632	3.721	1.596	9.682	5.514	3.359	4.725	2.266	2.273	8.087	8.179	6.942	4.578	3.858	5.751	0.845	0.783	0.372	0.549	0.519	0.173	2.723
3609	chr12	88367016	88373130	+	0	NA	intron (NR_045888, intron 1 of 2)	intron (NR_045888, intron 1 of 2)	7250	NR_045888	71818	Mm.490789	NR_045888		3200001D21Rik	-	RIKEN cDNA 3200001D21 gene	ncRNA	0.309	1.008	0.403	0.350	0.183	0.035	0.234	0.198	0.264	0.222	0.227	0.256	0.123	0.180	0.174	nan	0.190	0.345	2.644	1.723	1.231	5.114	1.870	0.966	nan
2786	chr11	100590967	100592357	+	0	NA	intron (NM_019795, intron 6 of 13)	intron (NM_019795, intron 6 of 13)	15771	NM_001146318	12799	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	5.340	2.523	0.932	3.958	3.741	2.474	2.031	1.549	3.109	4.117	1.717	0.964	1.506	3.555	1.605	2.881	2.154	2.330	1.565	nan	1.633	1.085	nan	nan	2.741
15448	chr9	102991451	102993420	+	0	NA	Intergenic	Intergenic	-16054	NM_033314	24059	Mm.207106	NM_033314	ENSMUSG00000032548	Slco2a1	2310021C19Rik|Pgt|Slc21a2|mPgt	solute carrier organic anion transporter family, member 2a1	protein-coding	4.672	1.243	0.800	3.354	2.668	1.780	5.137	2.495	3.154	4.010	1.567	1.352	4.869	6.722	4.335	4.692	2.542	4.523	1.127	1.263	0.724	1.344	1.612	1.651	5.613
14877	chr9	18096237	18097547	+	0	NA	Intergenic	L1_Mus3|LINE|L1	-195375	NM_025844	66917	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	8.610	12.614	4.035	10.427	2.146	1.762	4.926	5.514	6.010	7.005	4.864	3.595	6.975	6.126	8.131	10.837	5.021	9.096	4.754	1.679	1.122	4.572	2.744	1.406	13.057
10405	chr4	116268700	116270678	+	0	NA	intron (NM_181585, intron 3 of 9)	intron (NM_181585, intron 3 of 9)	47775	NM_181585	18710	Mm.253819	NM_181585	ENSMUSG00000028698	Pik3r3	AA414954|p55pik	phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)	protein-coding	5.981	14.836	4.283	8.968	2.583	1.087	3.875	5.398	4.832	6.319	7.859	2.824	5.163	7.161	7.322	8.976	3.660	8.499	5.586	2.334	1.418	6.919	2.031	1.571	10.508
1672	chr10	98001030	98002618	+	0	NA	Intergenic	L1Md_T|LINE|L1	-34734	NR_033537	100038699	Mm.467933	NR_033537		Gm10754	ENSMUSG00000074776	predicted gene 10754	ncRNA	5.824	0.447	0.660	1.674	2.961	1.794	3.661	2.909	3.789	5.464	1.371	2.593	4.476	6.135	4.204	4.547	6.619	3.893	nan	1.805	1.068	nan	1.924	1.035	2.338
13855	chr7	145473394	145478620	+	0	NA	Intergenic	Intergenic	161172	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	nan	nan	0.322	nan	0.127	0.024	0.679	0.439	nan	1.001	0.161	0.215	1.493	0.692	0.674	1.230	0.668	0.914	2.742	1.553	1.306	4.467	nan	1.276	nan
12204	chr6	48150758	48153610	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-65591	NM_001163475	69228	Mm.207555	NM_001163475	ENSMUSG00000057691	Zfp746	2810407L07Rik|AI317225|Znf746	zinc finger protein 746	protein-coding	0.272	0.480	0.092	0.403	0.267	0.093	0.386	0.367	0.293	0.321	0.290	0.099	0.214	0.124	0.237	0.760	0.474	nan	2.221	1.709	1.303	4.472	0.746	0.586	0.602
2325	chr11	63730960	63735733	+	0	NA	Intergenic	Intergenic	188938	NM_018805	54710	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	4.322	5.553	1.534	5.125	2.856	1.628	3.599	9.107	2.254	4.250	1.177	0.789	5.313	5.866	6.606	4.551	6.406	7.869	1.239	0.587	0.795	1.210	nan	1.367	13.021
13178	chr7	52594110	52595643	+	0	NA	Intergenic	RLTR17|LTR|ERVK	-579160	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	4.937	3.530	1.283	5.808	1.770	1.213	7.950	12.786	3.292	4.315	3.789	3.465	6.858	4.629	8.165	6.814	4.969	7.058	6.532	1.517	2.678	7.156	3.299	2.720	12.079
6225	chr16	93128914	93131081	+	0	NA	Intergenic	Intergenic	223192	NR_040486	69857	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	3.903	0.658	0.395	1.435	2.128	0.683	3.324	3.993	nan	3.481	1.345	0.587	5.508	4.042	nan	6.538	1.805	5.782	nan	0.288	0.448	0.338	0.464	0.171	4.648
15328	chr9	77595987	77607392	+	0	NA	Intergenic	L1MEd|LINE|L1	-35043	NM_172925	244923	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	5.366	4.041	1.954	4.379	2.796	1.491	2.984	5.922	4.424	6.882	3.460	2.478	4.593	4.651	4.611	5.914	2.879	5.464	2.482	nan	1.404	2.504	1.732	1.620	nan
9015	chr2	167153400	167164893	+	0	NA	intron (NM_008420, intron 1 of 1)	intron (NM_008420, intron 1 of 1)	29672	NM_008420	16500	Mm.205341	NM_008420	ENSMUSG00000050556	Kcnb1	Kcr1-1|Kv2.1|Shab	potassium voltage gated channel, Shab-related subfamily, member 1	protein-coding	2.095	2.574	1.242	2.722	1.452	0.907	1.071	1.807	1.482	1.283	0.790	0.964	0.901	nan	1.593	1.781	0.780	1.973	5.502	3.186	2.532	7.159	2.988	2.397	nan
4924	chr14	102095607	102098036	+	0	NA	Intergenic	L2c|LINE|L2	256198	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.514	8.326	7.050	0.381	0.236	0.148	0.481	0.633	0.324	0.371	0.380	0.290	0.270	0.472	0.403	0.571	0.590	0.682	0.834	1.122	0.337	0.991	1.018	1.064	nan
3941	chr13	34114106	34115602	+	0	NA	Intergenic	MTE2a|LTR|ERVL-MaLR	-1582	NR_046184	432745	Mm.159104	NR_046184		4930447K03Rik	-	RIKEN cDNA 4930447K03 gene	ncRNA	1.854	nan	0.496	1.790	1.387	0.796	nan	1.905	2.194	2.061	1.152	0.417	2.361	4.494	2.117	1.829	1.490	1.946	0.766	0.804	0.556	0.439	0.887	0.597	nan
2768	chr11	100015100	100021745	+	0	NA	Intergenic	Intergenic	-2210	NM_027983	71888	Mm.440318	NM_027983	ENSMUSG00000035592	Krt33a	2310015J09Rik	keratin 33A	protein-coding	2.247	nan	0.817	1.797	2.982	1.758	4.275	5.129	2.685	2.984	5.484	5.594	3.252	4.588	3.289	4.042	nan	3.066	2.035	nan	2.494	3.019	nan	nan	1.858
562	chr1	129480222	129484602	+	0	NA	intron (NM_172485, intron 2 of 27)	intron (NM_172485, intron 2 of 27)	209108	NM_172485	210417	Mm.380518	NM_172485	ENSMUSG00000042581	Thsd7b	1700074E13Rik|B930082A18|D130067I03Rik	thrombospondin, type I, domain containing 7B	protein-coding	4.254	nan	0.565	2.272	3.403	2.493	2.655	2.393	4.615	4.495	0.531	0.623	5.955	5.539	4.453	7.704	5.308	4.491	nan	1.039	0.661	1.156	1.180	0.724	3.107
9526	chr3	95050780	95052541	+	0	NA	Intergenic	MTC|LTR|ERVL-MaLR	-9046	NM_008951	19185	Mm.2261	NM_008951	ENSMUSG00000005625	Psmd4	Af1|Mcb1|angiocidin	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	protein-coding	3.617	1.046	1.422	2.194	3.137	4.618	2.449	2.193	2.652	2.219	nan	1.377	2.013	4.597	1.627	nan	2.444	1.862	0.870	1.039	1.600	0.362	1.014	1.377	2.459
10935	chr4	150193110	150202609	+	0	NA	intron (NM_009802, intron 2 of 7)	ID_B1|SINE|B4	3276	NM_009802	12353	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	7.560	nan	0.465	5.289	8.338	4.672	7.359	7.805	6.868	8.880	5.058	2.989	7.210	13.136	6.951	8.668	6.053	8.045	4.617	2.321	1.612	6.111	2.431	1.745	8.838
2269	chr11	59983050	59993966	+	0	NA	intron (NM_001290011, intron 2 of 6)	intron (NM_001290011, intron 2 of 6)	-23564	NM_009026	19416	Mm.3903	NM_009026	ENSMUSG00000049892	Rasd1	Dexras1	RAS, dexamethasone-induced 1	protein-coding	2.117	2.152	0.708	3.524	1.331	0.711	2.188	2.312	2.143	2.925	0.871	1.263	2.086	nan	3.134	3.877	1.890	4.322	3.817	1.761	1.509	4.926	2.431	2.100	nan
1102	chr10	12640879	12644042	+	0	NA	intron (NM_011682, intron 46 of 73)	intron (NM_011682, intron 46 of 73)	219275	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	7.428	5.788	3.227	6.122	4.866	3.932	5.251	5.218	3.996	5.561	4.576	3.219	4.684	7.256	5.704	5.411	6.584	5.631	1.925	1.821	2.106	2.092	2.032	2.355	7.483
7027	chr18	12105081	12107237	+	0	NA	intron (NM_178801, intron 3 of 14)	B2_Mm2|SINE|B2	15378	NR_110356	338363	Mm.271567	NM_178801	ENSMUSG00000049411	Tmem241	6030446N20Rik	transmembrane protein 241	protein-coding	8.938	1.497	0.622	7.016	2.133	1.234	2.934	9.934	4.093	7.639	7.291	2.307	nan	5.924	4.611	6.843	6.338	9.175	0.777	0.354	0.653	1.061	0.996	0.993	10.993
15826	chrX	137517094	137520130	+	0	NA	Intergenic	Lx10|LINE|L1	-52142	NM_030688	60367	Mm.328321	NM_030688	ENSMUSG00000059203	Il1rapl2	-	interleukin 1 receptor accessory protein-like 2	protein-coding	2.970	1.408	0.293	2.922	1.298	0.482	2.163	3.341	2.613	2.217	1.238	1.141	3.687	3.503	3.758	3.908	2.173	3.906	0.853	0.433	0.242	0.826	0.360	0.280	2.024
6481	chr17	28556423	28559764	+	0	NA	TTS (NR_105935)	TTS (NR_105935)	408	NR_105935	102465585		NR_105935	ENSMUSG00000099152	Mir6969	Gm27305|mmu-mir-6969	microRNA 6969	ncRNA	9.976	6.346	2.044	11.313	5.524	4.239	3.993	6.159	5.841	6.887	7.950	2.548	6.240	8.333	5.208	5.473	5.545	7.607	1.578	1.028	0.883	2.089	0.841	0.825	7.770
1478	chr10	79445970	79453223	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-19362	NM_001104537	625029	Mm.469865	NM_001104537	ENSMUSG00000091381	Vmn2r83	EG625029	vomeronasal 2, receptor 83	protein-coding	13.405	15.263	6.062	11.782	7.363	5.549	10.451	9.878	7.200	11.932	6.569	3.531	9.644	13.629	10.914	12.553	10.598	10.558	nan	3.338	3.114	4.400	3.542	2.944	17.980
2541	chr11	82658694	82660063	+	0	NA	Intergenic	Lx8|LINE|L1	26025	NR_033582	791422	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	OTTMUSG00000000913	predicted gene 11426	ncRNA	4.031	8.478	2.008	4.861	2.923	1.672	nan	5.397	3.466	3.388	2.528	2.732	2.069	5.724	5.487	5.335	4.320	4.361	1.109	1.364	nan	6.772	1.328	0.763	6.967
439	chr1	92792319	92795919	+	0	NA	Intergenic	Intergenic	-37567	NM_016696	14733	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	5.283	1.034	0.784	2.360	6.289	3.312	2.674	4.793	2.669	4.388	1.252	1.684	3.373	4.784	3.122	5.267	2.386	4.263	0.952	1.786	1.091	nan	0.934	0.687	1.988
5846	chr16	18511514	18516492	+	0	NA	intron (NR_104347, intron 2 of 8)	L1ME1|LINE|L1	15132	NR_104347	13972	Mm.236139	NM_023120	ENSMUSG00000000884	Gnb1l	ESTM55|Gm16314|Me49f07|OTTMUSG00000033458|Wdr14|Wdvcf	guanine nucleotide binding protein (G protein), beta polypeptide 1-like	protein-coding	1.462	0.768	0.654	0.568	0.426	0.348	0.641	0.810	1.173	nan	0.711	0.544	0.459	0.735	0.575	nan	1.311	1.000	3.654	3.403	2.856	3.500	3.678	3.438	0.745
15564	chr9	118515340	118522750	+	0	NA	intron (NM_018748, intron 2 of 23)	intron (NM_018748, intron 2 of 23)	12727	NM_018748	54214	Mm.10409	NM_018748	ENSMUSG00000038708	Golga4	AI225887|AU019508|Olp-1	golgi autoantigen, golgin subfamily a, 4	protein-coding	5.774	2.569	0.960	6.049	2.282	1.539	6.720	7.201	6.114	10.717	1.193	0.702	6.059	9.594	8.140	9.321	5.329	10.152	2.025	1.021	0.840	1.718	nan	1.046	15.758
2607	chr11	87881309	87884363	+	0	NA	Intergenic	Intergenic	7058	NM_146411	258406	Mm.377484	NM_146411	ENSMUSG00000093839	Olfr462	MOR240-3	olfactory receptor 462	protein-coding	3.866	9.792	2.417	10.069	3.291	1.858	3.508	4.242	3.242	10.800	5.715	3.352	4.016	5.309	5.764	6.702	3.264	6.053	9.547	4.103	4.351	10.946	4.008	6.641	nan
8676	chr2	131730049	131739047	+	0	NA	Intergenic	Intergenic	113108	NR_029381	414081	Mm.246905	NR_029381	ENSMUSG00000086822	5330413P13Rik	-	RIKEN cDNA 5330413P13 gene	ncRNA	7.054	2.419	1.312	4.524	4.271	2.099	3.576	5.525	4.795	5.193	2.116	1.752	5.226	5.985	5.363	8.288	6.586	6.992	nan	2.001	1.276	4.466	1.817	1.487	7.797
13825	chr7	139859841	139864925	+	0	NA	intron (NM_177469, intron 6 of 7)	RLTR20A4|LTR|ERVK	28209	NM_177469	52389	Mm.39863	NM_177469	ENSMUSG00000025475	Adgra1	2900059M17Rik|D7Ertd680e|Gpr123	adhesion G protein-coupled receptor A1	protein-coding	5.356	nan	1.249	8.144	2.289	1.484	2.586	3.055	4.488	4.358	3.405	2.067	4.823	4.655	4.382	5.710	3.298	7.184	1.985	1.441	1.070	2.695	0.723	0.821	7.598
9592	chr3	100273378	100274631	+	0	NA	Intergenic	Intergenic	111541	NR_104341	14547	Mm.279228	NM_010269	ENSMUSG00000027865	Gdap2	C77050|D3Ertd801e	ganglioside-induced differentiation-associated-protein 2	protein-coding	2.779	1.453	0.658	1.638	1.328	0.656	1.316	1.595	3.518	3.260	nan	1.137	3.364	3.625	2.863	2.710	3.201	4.378	0.888	0.621	0.560	0.816	0.481	0.153	2.704
3345	chr12	57244074	57246608	+	0	NA	intron (NM_001164370, intron 1 of 9)	B1_Mur1|SINE|Alu	14916	NM_001164370	73490	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	9.688	nan	0.260	1.755	2.479	0.678	7.390	4.690	4.198	4.271	5.267	2.037	10.313	7.822	5.928	5.811	9.854	7.535	0.927	0.894	0.377	0.651	0.625	0.188	5.202
12299	chr6	70754790	70755824	+	0	NA	Intergenic	Intergenic	36868	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	2.739	2.750	1.675	1.563	2.894	1.522	2.861	2.647	1.128	1.720	1.516	1.086	2.262	3.440	3.217	3.816	3.809	2.351	2.197	2.404	1.872	0.727	2.616	2.500	1.891
4839	chr14	73843153	73853415	+	0	NA	Intergenic	L1Md_F2|LINE|L1	295498	NM_011506	20916	Mm.38951	NM_011506	ENSMUSG00000022110	Sucla2	4930547K18Rik|A-SCS	succinate-Coenzyme A ligase, ADP-forming, beta subunit	protein-coding	5.871	1.895	1.413	1.817	1.896	1.112	2.940	7.397	3.595	4.300	6.687	3.653	2.738	nan	2.922	4.440	3.709	4.116	1.030	1.028	0.498	0.511	0.838	0.820	3.488
10255	chr4	88691854	88711690	+	0	NA	Intergenic	Intergenic	-10504	NM_008336	15974	Mm.377093	NM_008336	ENSMUSG00000100079	Ifnab	-	interferon alpha B	protein-coding	0.846	nan	0.408	0.623	0.962	0.575	1.292	nan	nan	1.593	10.306	6.349	1.564	2.002	1.212	0.947	0.734	nan	1.085	nan	0.438	1.041	0.819	0.562	nan
10974	chr4	153896203	153905843	+	0	NA	Intergenic	RMER19B|LTR|ERVK	49453	NR_040670	407793	Mm.260950	NR_040670		BC039966	-	cDNA sequence BC039966	ncRNA	3.616	0.502	0.231	4.540	3.101	1.583	4.700	4.473	3.712	5.085	0.944	1.028	4.946	6.538	5.283	6.676	3.052	5.445	0.886	0.482	0.369	0.612	0.767	0.423	6.714
4374	chr13	105424238	105427270	+	0	NA	Intergenic	Intergenic	-17939	NM_008308	15550	Mm.4716	NM_008308	ENSMUSG00000021721	Htr1a	Gpcr18	5-hydroxytryptamine (serotonin) receptor 1A	protein-coding	1.825	nan	0.415	1.652	0.524	0.284	1.943	2.497	3.207	3.317	0.584	0.387	3.936	2.501	3.869	4.955	2.944	nan	0.895	0.376	0.197	nan	0.370	0.114	1.672
18	chr1	10147450	10148990	+	0	NA	intron (NM_001102430, intron 32 of 37)	intron (NM_001102430, intron 32 of 37)	84450	NM_001102430	211673	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	10.456	0.866	0.717	1.757	1.610	1.030	3.450	3.300	1.793	1.893	0.219	0.393	3.750	4.749	4.157	6.175	6.912	4.918	0.827	0.732	0.435	0.752	0.247	0.475	5.017
376	chr1	87630776	87633095	+	0	NA	intron (NM_010566, intron 1 of 26)	intron (NM_010566, intron 1 of 26)	11623	NM_001110193	16331	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	10.626	15.669	8.035	4.590	3.843	2.291	6.312	5.771	3.330	4.285	1.392	1.415	5.517	4.886	6.161	9.998	6.173	6.082	1.191	2.587	1.542	3.841	1.443	0.712	9.321
15050	chr9	48287788	48289510	+	0	NA	Intergenic	B4A|SINE|B4	52249	NM_030069	78252	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding	7.627	7.468	2.860	6.616	4.074	2.397	4.443	4.468	3.432	5.439	3.469	2.742	6.447	5.518	nan	6.588	6.038	5.967	4.456	3.570	3.533	3.144	4.059	5.227	11.319
14452	chr8	91088424	91091113	+	0	NA	intron (NM_011250, intron 8 of 21)	intron (NM_011250, intron 8 of 21)	19711	NM_001282000	19651	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	retinoblastoma-like 2	protein-coding	3.478	1.397	0.968	3.936	3.180	2.309	1.449	2.357	nan	2.910	0.791	0.452	2.915	4.322	3.687	5.504	3.388	4.112	4.467	2.906	2.014	5.991	4.239	2.775	6.383
6598	chr17	35785391	35790978	+	0	NA	Intergenic	Intergenic	15734	NR_045459	74601	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	nan	0.579	0.228	6.157	7.682	5.316	11.007	8.238	7.684	9.115	1.815	0.963	9.800	12.827	11.055	13.464	9.336	9.910	0.612	0.713	0.707	0.451	0.390	0.479	16.175
5826	chr16	16071894	16076365	+	0	NA	intron (NM_146068, intron 5 of 19)	intron (NM_146068, intron 5 of 19)	72722	NM_146068	224008	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	9.148	0.679	0.739	5.637	7.456	3.934	6.856	9.876	7.002	7.619	6.814	2.140	9.966	10.245	6.484	nan	9.162	8.183	2.332	2.238	1.118	1.009	2.838	1.742	4.511
609	chr1	133723907	133726070	+	0	NA	intron (NM_213616, intron 14 of 19)	intron (NM_213616, intron 14 of 19)	1657	NR_105868	102466206		NR_105868	ENSMUSG00000098606	Mir6903	Gm27797|mmu-mir-6903	microRNA 6903	ncRNA	9.594	16.354	4.219	9.156	4.641	1.661	7.342	5.974	4.327	7.799	4.530	2.238	8.200	8.929	8.254	12.066	6.508	7.565	4.499	2.543	2.400	5.269	3.982	2.674	12.761
15864	chrX	162951812	162958632	+	0	NA	intron (NR_033143, intron 13 of 18)	intron (NR_033143, intron 13 of 18)	9377	NM_009789	12309	Mm.6891	NM_009789	ENSMUSG00000040808	S100g	AU042539|CABP1|CaBP-D9K|Cabp9k|Calb3	S100 calcium binding protein G	protein-coding	2.982	0.608	0.417	1.803	1.650	1.007	2.810	2.872	3.483	4.188	0.621	0.451	3.892	4.111	3.326	4.717	2.418	3.275	0.975	0.689	0.760	1.037	0.392	0.430	4.541
14139	chr8	35454768	35458012	+	0	NA	Intergenic	Intergenic	39143	NM_026067	67276	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	0.686	0.456	0.168	0.296	0.471	0.156	0.274	0.786	0.449	0.446	0.359	0.328	0.333	0.323	0.492	0.841	0.777	0.785	1.542	1.921	1.007	4.611	0.841	0.345	nan
13171	chr7	52269914	52275265	+	0	NA	Intergenic	Intergenic	-256873	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	9.139	8.075	2.933	9.739	6.645	3.037	6.465	10.152	5.145	7.722	5.729	3.698	7.269	8.830	7.651	8.254	6.258	8.855	3.651	2.814	2.038	3.176	3.554	2.521	11.405
5615	chr15	97712050	97716271	+	0	NA	intron (NM_001168693, intron 7 of 9)	intron (NM_001168693, intron 7 of 9)	6990	NM_008902	19011	Mm.1001	NM_008902	ENSMUSG00000022468	Endou	Pp11r|Tcl-30	endonuclease, polyU-specific	protein-coding	0.871	0.774	0.234	0.677	0.453	0.146	0.833	0.988	0.528	0.657	2.025	1.193	0.414	0.838	0.697	nan	0.585	0.930	1.170	1.456	0.512	5.022	0.431	0.158	0.873
7623	chr19	20796512	20801913	+	0	NA	exon (NM_028953, exon 17 of 21)	exon (NM_028953, exon 17 of 21)	-71656	NM_011921	26358	Mm.14609	NM_011921	ENSMUSG00000024747	Aldh1a7	AI987940|Ahd2-like|Aldh-pb|Aldh1a4|Aldhpb	aldehyde dehydrogenase family 1, subfamily A7	protein-coding	4.791	0.425	0.356	2.795	2.103	1.046	4.160	6.142	4.393	4.219	1.106	1.995	4.787	5.191	4.176	4.859	8.171	6.107	3.427	1.410	1.467	1.893	5.654	3.821	3.873
7105	chr18	33532278	33534217	+	0	NA	Intergenic	HERVL40-int|LTR|ERVL	69084	NR_045415	433171	Mm.353332	NR_045415		Gm10549	ENSMUSG00000073610	predicted gene 10549	ncRNA	2.637	0.700	0.390	1.887	1.415	0.502	1.880	2.261	2.188	1.778	0.782	0.710	2.739	3.193	3.407	3.175	1.870	3.666	0.409	0.534	0.259	0.662	0.272	0.101	3.577
10745	chr4	137338701	137341386	+	0	NA	intron (NM_009861, intron 1 of 5)	B2_Mm2|SINE|B2	17716	NM_009861	12540	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	nan	0.768	0.235	5.522	1.487	1.080	3.747	3.020	nan	2.831	1.084	0.450	2.496	4.634	4.192	5.225	1.808	3.933	1.009	0.579	0.776	1.990	nan	0.456	10.121
4790	chr14	66586338	66592189	+	0	NA	Intergenic	Intergenic	-45988	NM_001271759	11549	Mm.57064	NM_013461	ENSMUSG00000045875	Adra1a	Adra1c	adrenergic receptor, alpha 1a	protein-coding	3.733	2.146	0.800	2.899	1.834	1.072	6.326	7.363	3.210	3.294	1.569	4.247	4.379	5.730	5.071	5.137	2.307	3.970	0.878	nan	0.663	2.877	0.941	0.669	6.824
6717	chr17	48187615	48190331	+	0	NA	Intergenic	MERV1_I-int|LTR|ERV1	-21716	NM_178796	328830	Mm.470939	NM_178796	ENSMUSG00000043939	A530064D06Rik	Trem4|pdctrem	RIKEN cDNA A530064D06 gene	protein-coding	4.430	0.766	0.585	4.151	1.548	0.633	8.425	5.694	4.863	6.859	0.805	0.880	6.581	8.260	7.418	9.230	7.251	5.988	1.388	0.884	0.592	1.044	1.001	0.885	7.711
3652	chr12	103194564	103197633	+	0	NA	TTS (NM_133364)	TTS (NM_133364)	46048	NM_133364	170952	Mm.217019	NM_133364	ENSMUSG00000041669	Prima1	B230212M13Rik|BB120497|PRiMA	proline rich membrane anchor 1	protein-coding	10.573	5.665	3.463	nan	4.902	2.929	7.217	6.275	nan	5.497	3.768	2.918	7.441	nan	6.535	7.846	8.679	6.314	2.699	3.205	1.741	2.717	3.633	3.092	8.286
3373	chr12	66136554	66138531	+	0	NA	Intergenic	Intergenic	146859	NM_001162933	238217	Mm.188575	NM_001162933	ENSMUSG00000060499	Rpl10l	EG238217	ribosomal protein L10-like	protein-coding	8.123	6.605	3.173	8.339	5.086	3.249	6.542	4.866	4.886	8.337	4.448	3.362	7.132	7.110	7.569	8.361	6.957	7.429	4.330	1.972	2.592	4.208	2.823	4.649	11.252
12001	chr5	151851741	151853560	+	0	NA	Intergenic	Intergenic	-201442	NM_027009	69263	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	2.441	1.140	0.501	5.120	2.553	1.418	1.096	1.306	1.887	1.971	0.919	0.639	1.007	1.588	1.786	2.229	0.741	3.057	0.746	0.830	0.595	0.764	0.641	0.428	2.211
9278	chr3	51381182	51383567	+	0	NA	Intergenic	Intergenic	14173	NM_026358	67749	Mm.273339	NM_026358	ENSMUSG00000037161	Mgarp	4930583H14Rik|AI195347|CESP-1|HUMMR|Osap|Qsap	mitochondria localized glutamic acid rich protein	protein-coding	3.198	0.631	0.260	2.484	3.896	2.300	4.216	5.341	2.263	2.885	4.567	1.149	4.986	7.863	4.968	5.175	5.864	4.104	2.055	0.902	1.284	1.577	1.817	1.435	6.118
14281	chr8	72147381	72149812	+	0	NA	intron (NM_001001491, intron 7 of 7)	AT_rich|Low_complexity|Low_complexity	-12604	NM_023126	17274	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	5.445	4.868	2.839	3.755	4.874	3.233	4.781	5.879	3.285	4.667	3.279	1.777	4.679	7.014	5.101	5.818	5.675	3.657	nan	3.671	2.957	3.715	3.046	2.837	5.336
13526	chr7	108622617	108625385	+	0	NA	Intergenic	Intergenic	2187	NM_146743	258738	Mm.377666	NM_146743	ENSMUSG00000061000	Olfr507	MOR204-7	olfactory receptor 507	protein-coding	3.010	1.817	0.553	2.104	2.841	1.319	3.152	2.594	1.541	2.615	1.744	0.969	1.491	4.277	3.213	3.215	1.769	3.087	2.390	1.398	0.674	1.554	3.551	2.525	4.856
148	chr1	43501157	43505044	+	0	NA	intron (NM_010879, intron 1 of 4)	intron (NM_010879, intron 1 of 4)	57349	NM_010879	17974	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	7.915	5.228	1.271	5.333	2.161	1.684	7.615	8.031	3.892	7.080	4.005	3.570	7.462	6.471	8.398	12.441	6.446	6.390	4.803	1.439	1.773	4.395	3.050	3.450	11.240
6453	chr17	27689511	27699087	+	0	NA	intron (NM_178365, intron 1 of 9)	MuRRS4-int|LTR|ERV1	9060	NM_178365	23969	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	2.920	9.027	2.533	4.011	1.943	1.457	6.351	5.231	2.315	5.026	4.703	2.739	3.989	5.686	6.015	nan	3.426	3.668	2.785	1.314	1.775	5.098	1.366	2.003	8.726
12182	chr6	39211596	39220305	+	0	NA	Intergenic	MTEa|LTR|ERVL-MaLR	-9177	NM_001033430	338523	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|ENSMUSG00000073143|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	4.512	1.208	0.770	3.022	3.153	2.043	5.019	6.922	3.215	3.508	2.060	2.518	4.983	6.607	4.610	5.581	4.304	nan	nan	3.277	2.486	nan	nan	4.348	nan
6067	chr16	38700413	38704142	+	0	NA	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	10758	NM_020260	12549	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	3.646	0.723	0.627	3.523	5.049	2.697	0.965	1.140	2.350	2.775	0.821	1.123	1.577	nan	2.217	nan	2.186	3.400	0.495	0.999	0.942	0.804	0.719	0.598	nan
7709	chr19	32559892	32564298	+	0	NA	Intergenic	Lx9|LINE|L1	-33620	NM_001201470	23972	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	nan	9.350	4.488	nan	0.992	0.884	2.190	nan	1.461	2.432	nan	1.203	1.540	1.652	2.455	2.381	1.485	2.497	nan	0.745	1.169	2.468	nan	1.164	3.540
1343	chr10	60923865	60925242	+	0	NA	Intergenic	Intergenic	1530	NR_105835	102466158		NR_105835	ENSMUSG00000099279	Mir6408	Gm27451|mmu-mir-6408	microRNA 6408	ncRNA	1.871	0.926	1.126	1.026	2.515	1.709	1.515	2.428	0.992	1.413	1.273	1.227	1.365	3.429	0.968	1.083	0.703	1.568	nan	0.786	0.767	0.557	1.182	0.958	2.217
8383	chr2	76401214	76402967	+	0	NA	Intergenic	Intergenic	-4418	NM_145525	99031	Mm.240435	NM_145525	ENSMUSG00000042359	Osbpl6	1110062M20Rik|AI596402|ORP-6|mKIAA4128	oxysterol binding protein-like 6	protein-coding	3.281	0.451	0.411	nan	0.436	0.284	2.029	5.155	2.790	3.118	5.575	3.476	5.763	4.448	3.100	4.786	4.180	3.374	0.484	0.481	0.561	0.493	0.517	0.519	3.131
14261	chr8	66716693	66719010	+	0	NA	Intergenic	Intergenic	20429	NM_010934	18166	Mm.5112	NM_010934	ENSMUSG00000036437	Npy1r	Npyr|Y1-R	neuropeptide Y receptor Y1	protein-coding	0.492	0.320	0.280	0.336		0.141	0.325	0.474	0.174	0.207	0.277	0.252	0.258	0.334	0.188	0.422	0.428	0.363	nan	4.436	3.510	7.164	1.170	0.807	nan
7234	chr18	53294871	53296248	+	0	NA	intron (NM_029394, intron 1 of 6)	Lx8|LINE|L1	49897	NM_029394	69226	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	6.273	nan	0.771	1.817	1.332	0.617	5.182	3.793	1.937	1.663	0.405	0.789	6.483	4.569	6.941	7.225	5.330	4.450	nan	0.621	0.278	nan	1.011	0.304	4.605
2655	chr11	94196537	94209517	+	0	NA	Intergenic	B2_Mm1a|SINE|B2	-8427	NM_009427	22057	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	4.947	nan	0.664	5.596	4.384	2.853	5.868	6.519	5.517	6.041	2.070	2.054	6.875	8.521	6.467	8.001	5.485	7.401	3.021	nan	1.258	2.622	nan	nan	6.055
726	chr1	146019574	146026650	+	0	NA	Intergenic	L1Md_A|LINE|L1	-472554	NM_153539	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	nan	7.336	4.917	0.441	0.160	0.034	0.274	0.347	0.359	0.312	0.295	0.313	0.217	0.211	0.340	0.713	0.685	0.573	0.658	0.488	0.131	0.305	0.487	0.261	0.214
7722	chr19	34516177	34520858	+	0	NA	intron (NM_001111100, intron 3 of 9)	intron (NM_001111100, intron 3 of 9)	8957	NM_001111100	16889	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	4.888	1.343	0.684	2.693	1.850	0.873	6.330	5.812	3.894	3.404	3.515	1.993	4.862	5.532	5.923	5.507	7.287	4.527	0.679	0.675	0.254	0.384	0.307	0.257	2.891
6241	chr16	94536189	94540443	+	0	NA	Intergenic	Intergenic	-11687	NM_007834	13185	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	Down syndrome critical region gene 3	protein-coding	nan	1.071	0.817	2.321	1.313	1.002	3.287	8.012	3.507	1.565	2.815	5.212	3.445	2.133	1.601	1.758	1.325	3.152	nan	0.857	1.114	0.848	0.843	1.264	1.080
2703	chr11	96529307	96540606	+	0	NA	intron (NM_001033186, intron 3 of 12)	intron (NM_001033186, intron 3 of 12)	70365	NM_001177898	78473	Mm.395840	NM_001033186	ENSMUSG00000057058	Skap1	1700091G21Rik|Scap1|Skap-55	src family associated phosphoprotein 1	protein-coding	0.348	nan	0.449	0.386	0.217	0.120	0.275	0.287	0.389	0.319	0.267	0.215	0.170	0.245	0.290	0.531	nan	0.434	4.392	nan	2.590	6.094	nan	nan	0.434
12065	chr6	15737709	15744841	+	0	NA	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	20614	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	4.001	nan	5.706	3.353	2.134	1.176	1.839	2.045	nan	2.777	1.205	0.993	2.251	2.505	2.810	nan	2.701	3.121	1.277	1.341	1.100	2.163	0.980	0.991	2.442
6659	chr17	45913479	45915912	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	110468	NM_001110267	22339	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	2.517	0.526	0.610	0.589	3.504	2.132	6.200	5.594	3.113	3.536	5.869	5.943	3.774	4.553	2.892	3.413	2.183	1.926	0.567	0.412	0.438	0.533	0.533	0.563	1.845
4110	chr13	49237770	49243783	+	0	NA	intron (NM_028340, intron 1 of 4)	intron (NM_028340, intron 1 of 4)	7387	NM_025491	66329	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	nan	0.530	0.201	nan	0.172	0.121	0.418	0.391	0.260	1.017	0.346	0.531	0.175	0.288	0.556	0.630	0.327	nan	3.097	nan	1.499	4.853	3.764	4.817	nan
157	chr1	51561583	51567128	+	0	NA	Intergenic	Lx7|LINE|L1	-85956	NM_001310549	109019	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	8.971	1.136	1.016	2.322	4.675	2.149	4.470	4.514	3.479	3.445	5.427	3.785	3.946	4.992	4.173	nan	6.595	nan	nan	0.971	0.537	0.441	1.529	0.911	3.589
2009	chr11	20441916	20444209	+	0	NA	Intergenic	RSINE1|SINE|B4	-100191	NM_021372	58172	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	6.321	12.743	5.030	8.108	4.884	3.078	4.669	5.210	3.307	7.096	5.688	3.920	4.206	8.172	5.693	7.353	5.441	4.537	4.324	1.971	3.125	5.081	2.892	3.838	8.469
1909	chr11	4086269	4089305	+	0	NA	Intergenic	L1_Mur3|LINE|L1	7644	NM_026443	67900	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	6.521	6.572	1.933	9.097	3.653	1.938	3.650	5.339	4.027	6.214	6.180	3.229	2.997	4.674	5.004	6.166	3.539	6.765	3.034	nan	1.847	4.340	3.036	2.765	7.252
7179	chr18	38363825	38366123	+	0	NA	Intergenic	MTC|LTR|ERVL-MaLR	-25981	NM_011937	26384	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	4.153	0.897	0.605	2.179	2.282	1.142	4.599	10.010	2.500	1.947	6.504	2.803	3.275	4.654	3.251	2.769	2.654	3.620	1.955	1.427	0.518	1.718	2.052	1.411	2.914
2627	chr11	89955971	89957738	+	0	NA	Intergenic	RMER4B|LTR|ERVK	46040	NM_008796	18559	Mm.5062	NM_008796	ENSMUSG00000020553	Pctp	PC-TP|StarD2	phosphatidylcholine transfer protein	protein-coding	nan	1.105	0.757	4.803	0.369	0.068	0.363	0.523	0.913	0.814	0.601	0.234	0.401	0.447	0.468	0.885	0.073	1.874	0.381	0.393	0.239	nan	0.268	0.010	nan
3576	chr12	86802981	86806725	+	0	NA	Intergenic	Intergenic	70484	NM_001195767	627607	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	6.103	1.503	1.341	5.824	4.575	2.620	2.387	4.859	4.478	3.653	4.172	2.277	3.004	4.918	3.217	nan	3.814	4.442	1.362	2.281	1.188	1.829	1.157	1.013	4.029
1213	chr10	39088338	39091388	+	0	NA	intron (NM_010681, intron 30 of 37)	L2a|LINE|L2	44032	NM_183254	66337	Mm.45187	NM_183254	ENSMUSG00000051736	Fam229b	1700025K23Rik	family with sequence similarity 229, member B	protein-coding	4.312	10.898	4.317	4.605	1.862	1.159	1.621	2.110	1.859	4.435	0.668	0.671	1.121	1.616	2.370	3.232	2.914	2.458	3.685	2.599	2.742	4.094	4.477	4.247	4.047
1093	chr10	9247614	9252672	+	0	NA	Intergenic	Intergenic	-364073	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	5.104	0.485	0.403	2.001	3.531	2.172	6.595	5.040	4.372	3.512	6.487	5.261	4.689	6.226	5.677	4.674	3.474	3.763	0.869	0.642	0.459	0.439	0.638	0.417	3.636
13917	chr7	150473508	150478562	+	0	NA	Intergenic	Intergenic	5161200	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	2.857	nan	0.421	nan	1.528	0.534	2.665	3.856	4.140	4.149	0.638	0.923	2.959	4.078	3.308	3.931	4.226	4.747	1.529	1.042	0.362	1.126	nan	1.169	nan
14830	chr8	129596602	129607038	+	0	NA	Intergenic	Intergenic	338190	NR_144501	102635552		NM_001346808		Gm32856	-	predicted gene, 32856	protein-coding	3.975	nan	0.293	nan	1.855	0.860	3.200	5.925	2.280	2.555	3.018	1.699	4.887	4.900	4.843	6.072	4.869	nan	nan	0.815	0.623	nan	0.544	nan	nan
12250	chr6	53904458	53907168	+	0	NA	intron (NM_001289713, intron 11 of 12)	intron (NM_001289713, intron 11 of 12)	72860	NM_001289714	71287	Mm.158654	NM_027749	ENSMUSG00000052955	Cpvl	4933436L16Rik|HVLP	carboxypeptidase, vitellogenic-like	protein-coding	2.378	0.594	0.524	1.627	0.895	0.588	2.856	1.198	1.329	1.938	0.261	0.236	4.205	3.865	1.231	3.626	3.167	3.520	nan	0.734	0.765	1.197	0.608	0.567	4.196
9411	chr3	85645826	85653280	+	0	NA	intron (NM_144896, intron 11 of 12)	intron (NM_144896, intron 11 of 12)	75424	NM_144896	229487	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	3.051	0.654	0.642	1.903	1.593	0.993	2.374	1.994	2.193	2.214	1.587	1.684	2.748	2.377	2.111	nan	3.046	3.129	6.571	3.406	2.237	5.037	4.711	3.456	3.787
8061	chr2	28372053	28386249	+	0	NA	Intergenic	Intergenic	-68790	NM_001005420	241289	Mm.330095	NM_001005420	ENSMUSG00000035829	Ppp1r26	Gm347|Kiaa0649|mKIAA0649	protein phosphatase 1, regulatory subunit 26	protein-coding	5.612	6.487	2.451	5.812	4.532	3.436	5.467	9.688	4.242	4.544	4.424	2.604	6.090	6.235	5.522	7.607	4.301	5.818	3.082	1.442	1.906	3.331	2.294	2.112	9.595
6955	chr17	87872089	87874848	+	0	NA	Intergenic	RMER12C|LTR|ERVK	-75474	NM_199251	210741	Mm.312046	NM_199251	ENSMUSG00000050138	Kcnk12	mntk1	potassium channel, subfamily K, member 12	protein-coding	5.086	0.981	0.628	3.700	5.924	3.146	5.434	4.250	5.092	7.194	2.716	2.284	2.583	6.116	3.511	7.574	7.512	4.741	1.178	1.813	1.295	2.066	2.246	1.697	9.287
11508	chr5	104235333	104237577	+	0	NA	Intergenic	Intergenic	33838	NM_016779	13406	Mm.199008	NM_016779	ENSMUSG00000029307	Dmp1	AV020965|Dmp|PP	dentin matrix protein 1	protein-coding	4.662	1.074	0.683	3.883	3.173	1.280	nan	5.184	3.981	3.397	5.423	3.977	2.722	2.480	3.860	4.653	3.594	4.383	6.049	3.967	2.844	8.011	2.567	1.604	4.400
8856	chr2	155342935	155344692	+	0	NA	intron (NM_001004721, intron 2 of 11)	L2|LINE|L2	-13004	NR_030475	735287		NR_030475	ENSMUSG00000076216	Mir695	Mirn695|mmu-mir-695	microRNA 695	ncRNA	4.841	5.393	2.513	4.032	2.898	0.785	2.040	5.219	nan	5.678	2.554	1.785	nan	6.092	4.311	6.576	4.915	nan	2.725	2.683	1.027	3.127	3.287	1.942	7.039
624	chr1	134556332	134558616	+	0	NA	Intergenic	Intergenic	-2704	NM_152895	75605	Mm.28995	NM_152895	ENSMUSG00000042207	Kdm5b	2010009J12Rik|2210016I17Rik|AW556288|D1Ertd202e|Jarid1b|PLU-1|PUT1|Plu1|RBBP2H1A|Rb-Bp2|mKIAA4034	lysine (K)-specific demethylase 5B	protein-coding	0.811	1.030	0.371	nan	0.228	0.163	0.592	0.668	0.555	0.431	0.296	0.406	0.338	nan	0.353	nan	0.709	0.569	4.498	2.895	2.013	2.311	8.648	6.746	nan
6323	chr17	8417859	8419747	+	0	NA	intron (NM_001161832, intron 9 of 10)	intron (NM_001161832, intron 9 of 10)	-15620	NM_009309	20997	Mm.913	NM_009309	ENSMUSG00000062327	T	Bra|D17Mit170|Low|Lr|T1|Tl2|Tl3|cou|me75	brachyury	protein-coding	2.579	4.823	2.099	1.755	1.105	0.800	1.016	1.346	1.807	1.858	1.101	0.740	1.365	1.449	1.760	1.985	nan	1.704	nan	1.012	0.884	0.539	0.368	0.649	2.728
371	chr1	84834705	84837526	+	0	NA	intron (NM_133975, intron 1 of 40)	B3|SINE|B2	3189	NM_133975	14897	Mm.209265	NM_133975	ENSMUSG00000026219	Trip12	1110036I07Rik|6720416K24Rik|AA410158|Gtl6|TRIP-12	thyroid hormone receptor interactor 12	protein-coding	13.967	9.921	3.821	9.042	9.147	6.473	11.182	8.180	5.352	11.147	8.078	4.469	8.491	10.712	7.493	11.343	10.520	8.437	4.939	3.260	6.035	nan	5.287	7.733	15.633
6209	chr16	92293271	92295910	+	0	NA	intron (NM_134110, intron 1 of 1)	intron (NM_134110, intron 1 of 1)	2201	NM_134110	246133	Mm.156736	NM_134110	ENSMUSG00000039672	Kcne2	2200002I16Rik|AW048273|MiRP1	potassium voltage-gated channel, Isk-related subfamily, gene 2	protein-coding	7.293	nan	0.224	5.560	3.868	2.181	4.884	9.545	7.119	8.593	0.540	1.456	10.152	12.439	9.676	11.161	7.795	9.776	3.785	1.753	1.423	nan	3.051	1.765	7.694
10120	chr4	57928599	57930935	+	0	NA	Intergenic	Intergenic	-13503	NM_178727	242484	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding	8.202	nan	0.744	3.534	3.117	1.505	nan	6.608	2.199	4.379	2.608	3.217	4.024	4.937	3.846	5.270	5.430	3.291	5.151	6.704	4.491	7.356	4.276	2.954	8.323
6967	chr17	89672987	89675262	+	0	NA	Intergenic	L1_Mus1|LINE|L1	294883	NR_045952	100043904	Mm.396198	NR_045952		Gm4719	-	predicted gene 4719	ncRNA	0.891	0.416	0.274	0.384		0.055	2.392	3.380	nan	2.980	5.386	3.553	2.588	3.014	2.069	0.915	2.735	0.933	0.359	0.377	0.108	0.968	0.114	0.128	0.182
9209	chr3	30124015	30127750	+	0	NA	Intergenic	B3A|SINE|B2	-112678	NM_007963	14013	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	1.220	0.535	0.625	nan	1.062	0.728	nan	0.680	4.770	2.845	0.905	2.906	1.925	1.440	nan	3.123	1.879	2.960	0.760	0.536	0.952	0.457	0.671	0.748	1.651
6872	chr17	79728987	79733266	+	0	NA	Intergenic	Intergenic	-16085	NM_009994	13078	Mm.214016	NM_009994	ENSMUSG00000024087	Cyp1b1	CP1B|P4501b1	cytochrome P450, family 1, subfamily b, polypeptide 1	protein-coding	3.092	1.716	0.827	2.187	3.213	1.842	4.784	1.901	3.056	3.236	1.042	0.645	3.452	4.045	3.955	5.551	3.439	3.929	0.726	0.374	0.480	0.478	0.358	0.267	4.738
1041	chr1	193913107	193916902	+	0	NA	Intergenic	RMER15|LTR|ERVL	307755	NR_040477	74942	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	5.638	13.624	4.656	6.339	1.733	1.002	3.782	3.486	3.067	3.303	2.735	1.590	2.909	3.125	5.075	6.165	3.640	5.261	1.566	1.569	0.951	2.020	nan	0.875	7.984
7674	chr19	27425275	27426137	+	0	NA	intron (NR_131940, intron 3 of 17)	intron (NR_131940, intron 3 of 17)	4202	NM_177474	52874	Mm.261027	NM_177474	ENSMUSG00000041360	Pum3	1110069H02Rik|AA675048|D19Bwg1357e|Kiaa0020	pumilio RNA-binding family member 3	protein-coding	1.479	0.643	0.670	nan	1.839	1.008	2.200	4.183	1.946	1.502	4.658	2.862	1.754	3.943	1.306	0.953	1.239	2.259	nan	0.691	0.284	0.848	nan	0.239	1.543
8421	chr2	90330219	90331902	+	0	NA	Intergenic	L1_Mus3|LINE|L1	8838	NM_146265	257665	Mm.271314	NM_146265	ENSMUSG00000075064	Olfr1506	MOR228-4	olfactory receptor 1506	protein-coding	4.492	3.190	1.831	3.048	1.122	0.735	5.110	10.728	3.732	2.944	5.697	6.182	6.653	5.002	4.551	6.576	4.724	4.462	4.214	2.835	1.633	4.455	2.800	2.427	3.870
6080	chr16	44190145	44193559	+	0	NA	intron (NM_001029889, intron 1 of 7)	LTR86B1|LTR|ERVL	18455	NM_001029889	207806	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	5.053	2.233	1.663	2.777	3.656	2.518	2.959	3.856	3.102	3.101	2.075	1.388	5.212	4.896	3.594	4.070	4.523	4.388	1.971	1.377	1.442	1.326	2.086	1.794	3.824
1990	chr11	16902717	16909205	+	0	NA	intron (NM_207655, intron 22 of 27)	intron (NM_207655, intron 22 of 27)	45321	NR_110421	72735	Mm.268598	NR_015469		Eldr	2810442I21Rik|4930500E12Rik|Fabl	Egfr long non-coding downstream RNA	ncRNA	nan	9.273	6.101	2.546	1.521	0.853	1.247	1.069	2.019	2.072	1.803	0.843	1.202	1.792	1.697	2.211	1.917	nan	0.839	1.472	1.081	0.443	0.484	0.467	2.045
10319	chr4	101365265	101367241	+	0	NA	intron (NR_040640, intron 1 of 3)	intron (NR_040640, intron 1 of 3)	-10005	NR_040708	77866	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	3.680	nan	1.006	4.308	3.714	1.695	0.881	0.409	2.047	2.301	0.681	0.466	0.967	2.655	nan	1.588	1.538	2.318	1.245	4.115	2.641	nan	1.312	0.573	1.641
3254	chr12	29468036	29472545	+	0	NA	Intergenic	B3A|SINE|B2	-58094	NM_001093775	17933	Mm.253067	NM_008666	ENSMUSG00000061911	Myt1l	2900046C06Rik|2900093J19Rik|C630034G21Rik|Nztf1|Pmng1|Png-1|mKIAA1106	myelin transcription factor 1-like	protein-coding	0.514	1.459	0.608	0.479	0.244	0.055	0.301	0.574	0.281	0.209	0.297	0.198	0.257	0.270	0.282	0.602	0.389	0.475	3.404	2.276	1.327	3.750	4.537	3.022	0.902
12032	chr6	5208822	5212248	+	0	NA	Intergenic	Intergenic	-16589	NM_011134	18979	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	3.913	5.552	3.003	2.326	2.967	1.408	6.551	3.341	1.861	1.779	0.956	0.418	5.051	5.825	3.860	nan	5.126	3.182	0.601	1.131	0.866	0.823	0.716	0.438	nan
7699	chr19	32258446	32267297	+	0	NA	intron (NM_001168525, intron 2 of 9)	RLTR21|LTR|ERVK	-51858	NM_001168526	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	5.386	3.001	1.308	4.959	5.013	2.340	4.922	7.815	4.819	4.652	4.528	2.374	4.465	5.728	5.066	5.893	5.804	5.778	nan	1.226	0.717	2.624	nan	0.592	5.245
5235	chr15	60523858	60527639	+	0	NA	Intergenic	Intergenic	-297217	NR_030696	320469	Mm.230853	NM_177166		9930014A18Rik	-	RIKEN cDNA 9930014A18 gene	ncRNA	1.017	0.640	0.405	nan	0.212	0.017	nan	nan	nan	nan	0.364	0.475	0.625	0.564	1.020	nan	0.497	1.120	4.871	1.538	0.770	5.155	2.513	1.520	0.794
15133	chr9	58428899	58431515	+	0	NA	Intergenic	Intergenic	-24966	NR_040736	74879	Mm.416924	NR_040736	ENSMUSG00000097651	4930461G14Rik	-	RIKEN cDNA 4930461G14 gene	ncRNA	14.790	10.407	5.962	10.018	11.118	6.281	9.248	9.934	6.915	12.337	10.998	6.986	6.776	14.790	8.222	9.553	8.507	8.050	9.780	12.207	6.875	7.158	15.737	11.616	14.638
14601	chr8	113234387	113236489	+	0	NA	Intergenic	Intergenic	168176	NR_033584	791378	Mm.350576	NR_033584	ENSMUSG00000110541	Gm10280	ENSMUSG00000069883	predicted gene 10280	ncRNA	2.922	1.293	0.378	5.640	0.803	0.234	1.480	1.258	1.380	1.898	0.807	0.667	0.657	0.971	1.643	2.400	0.881	3.447	0.685	1.096	0.811	1.974	0.616	0.047	2.723
14171	chr8	37806142	37809899	+	0	NA	intron (NM_145841, intron 2 of 7)	intron (NM_145841, intron 2 of 7)	444182	NR_029884	723860		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA	4.576	0.748	0.488	4.074	3.910	1.339	4.876	4.015	3.246	3.949	2.046	0.584	9.870	6.884	5.599	6.334	4.361	4.396	0.476	0.627	0.163	0.577	0.371	0.254	nan
13000	chr7	25264397	25268062	+	0	NA	Intergenic	RLTR13C2|LTR|ERVK	-1470	NM_001302811	71722	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	1.833	1.445	1.016	1.119	2.833	1.764	3.171	3.225	1.449	2.439	4.350	1.990	1.595	3.555	2.466	1.391	1.499	1.016	7.353	7.777	5.590	6.920	9.498	8.967	2.364
2109	chr11	44520166	44523026	+	0	NA	intron (NM_001166553, intron 1 of 5)	intron (NM_001166553, intron 1 of 5)	2219	NM_001166553	74315	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	1.117	8.115	7.560	0.927	0.752	0.392	0.522	nan	0.540	0.897	0.204	0.449	0.180	0.604	0.547	nan	0.699	nan	nan	1.088	0.817	nan	nan	0.371	0.498
9022	chr2	167446292	167450181	+	0	NA	intron (NM_001304540, intron 7 of 16)	intron (NM_001304540, intron 7 of 16)	26526	NM_001304542	77031	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	3.530	6.842	3.374	3.546	4.584	2.820	2.681	7.043	2.739	3.620	1.707	1.077	3.213	5.301	2.884	2.967	2.227	nan	nan	2.535	1.940	2.493	3.349	2.801	nan
6544	chr17	32117358	32121640	+	0	NA	Intergenic	Intergenic	-28076	NR_027316	435518	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	ENSMUSG00000002791|Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	6.054	2.433	0.977	6.184	2.867	1.923	7.250	5.828	4.883	6.530	7.854	3.306	6.288	8.978	4.735	6.984	5.106	7.647	0.958	1.064	0.487	1.508	0.777	0.427	5.649
5133	chr15	38106047	38108576	+	0	NA	Intergenic	RMER17B|LTR|ERVK	-28457	NM_001081359	70790	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	7.293	1.221	0.541	1.704	1.330	0.788	6.144	10.286	1.852	2.831	1.491	0.890	6.253	6.521	4.797	4.807	7.026	2.677	1.700	1.556	1.099	nan	1.222	0.834	6.203
14200	chr8	46712126	46716037	+	0	NA	Intergenic	Intergenic	25434	NR_045750	100503498	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	3.493	2.786	1.927	1.535	0.936	0.314	2.077	3.953	1.930	1.324	2.018	1.630	2.653	2.166	2.209	2.302	3.184	1.707	8.160	7.097	3.140	13.126	3.112	1.725	3.354
13420	chr7	95573259	95575705	+	0	NA	Intergenic	B4|SINE|B4	-596762	NM_001310762	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	2.793	0.447	0.383	1.807	1.918	1.018	4.022	4.208	3.414	2.762	3.735	1.429	4.990	4.508	4.667	3.879	4.007	4.299	nan	0.448	0.370	0.709	0.586	0.205	1.794
3539	chr12	82788791	82792747	+	0	NA	intron (NM_001310478, intron 2 of 17)	intron (NM_001310478, intron 2 of 17)	148386	NR_046045	74283	Mm.398247	NR_046045	ENSMUSG00000100890	1700085C21Rik	-	RIKEN cDNA 1700085C21 gene	ncRNA	7.168	0.641	0.527	3.106	4.364	2.396	1.835	2.843	3.664	5.772	4.136	3.372	2.242	5.383	2.497	nan	2.270	3.805	1.101	0.723	0.585	0.918	1.043	0.537	8.680
12785	chr6	134763098	134770411	+	0	NA	intron (NM_001048054, intron 1 of 6)	PB1D10|SINE|Alu	25874	NM_130447	70686	Mm.491182	NM_130447	ENSMUSG00000030203	Dusp16	3830417M17Rik|AW558566|D6Ertd213e|MKP-7|MKP7|Mkpm	dual specificity phosphatase 16	protein-coding	2.007	0.614	0.356	1.564	2.597	1.654	1.993	2.867	1.879	1.839	2.275	1.138	1.814	3.198	nan	2.814	1.981	2.425	nan	3.271	2.735	4.852	3.636	2.498	nan
12078	chr6	21753796	21755866	+	0	NA	Intergenic	Intergenic	97684	NM_173007	269831	Mm.21950	NM_173007	ENSMUSG00000029669	Tspan12	9030619E17|AI426782|AI663988|AW111457|Tm4sf12	tetraspanin 12	protein-coding	3.116	nan	0.334	2.538	0.724	0.757	2.647	2.519	nan	1.626	1.819	0.878	1.833	3.315	4.101	6.128	3.715	2.665	0.919	1.051	0.178	1.272	0.645	0.298	4.353
6311	chr17	6974150	6977566	+	0	NA	Intergenic	Intergenic	-3002	NM_026611	68195	Mm.181237	NM_026611	ENSMUSG00000094724	Rnaset2b	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2B	protein-coding	3.918	1.939	1.050	4.314	3.503	2.810	4.960	3.596	4.214	4.765	2.821	1.692	4.019	4.762	5.275	8.229	4.985	5.089	nan	1.115	1.008	3.617	1.003	0.969	5.192
6205	chr16	91962238	91963898	+	0	NA	Intergenic	Intergenic	-31438	NM_138597	28080	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	3.368	1.946	1.724	1.141	4.890	2.344	3.197	5.919	2.390	2.615	4.531	4.841	2.879	4.670	3.308	1.794	1.835	nan	1.855	1.071	0.517	nan	1.962	2.149	1.778
345	chr1	78697851	78703761	+	0	NA	intron (NM_028817, intron 12 of 15)	intron (NM_028817, intron 12 of 15)	42366	NM_001136226	195434	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	6.548	1.798	0.724	1.472	1.002	0.623	3.816	3.812	2.570	2.503	1.621	0.920	6.106	3.434	3.505	5.855	4.106	4.112	nan	nan	0.354	0.759	nan	0.315	nan
3323	chr12	53097944	53100429	+	0	NA	intron (NM_198111, intron 11 of 13)	MER5A|DNA|hAT-Charlie	-149491	NM_013780	27386	Mm.247044	NM_013780	ENSMUSG00000021010	Npas3	4930423H22Rik|bHLHe12	neuronal PAS domain protein 3	protein-coding	6.158	nan	0.473	1.651	2.185	1.920	3.340	1.928	1.773	1.993	0.431	0.311	3.345	4.889	2.589	4.051	3.401	3.803	0.483	0.509	0.232	0.312	0.294	0.063	6.399
9449	chr3	88407417	88408591	+	0	NA	intron (NM_025928, intron 1 of 4)	intron (NM_025928, intron 1 of 4)	2393	NM_001310605	67037	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	5.080	2.145	1.372	5.509	3.940	2.778	3.683	3.370	3.215	3.252	2.396	1.655	3.134	4.633	3.798	4.588	3.212	4.098	nan	1.388	1.043	1.117	1.085	0.779	3.485
613	chr1	134045359	134049633	+	0	NA	3' UTR (NM_021355, exon 3 of 3)	3' UTR (NM_021355, exon 3 of 3)	9981	NM_021355	14264	Mm.287146	NM_021355	ENSMUSG00000041559	Fmod	AI131919|AU041740|SLRR2E	fibromodulin	protein-coding	8.540	0.848	0.311	nan	3.349	2.189	7.235	7.441	5.245	6.685	8.040	4.794	6.741	7.801	7.700	nan	3.940	8.461	3.718	1.047	1.287	4.290	1.082	0.750	11.056
9184	chr3	27168760	27170590	+	0	NA	Intergenic	Intergenic	-13329	NM_178772	320024	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	4.875	3.166	1.372	5.367	2.318	1.508	3.266	2.583	3.809	3.852	2.274	1.175	4.822	5.098	nan	5.876	3.488	6.475	1.139	1.466	0.430	1.383	0.610	0.149	5.295
5141	chr15	38397234	38404834	+	0	NA	Intergenic	Intergenic	89513	NR_105916	102465574		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	10.559	9.276	2.530	10.219	3.471	2.111	7.087	11.291	5.161	9.275	7.280	3.982	10.003	8.328	8.230	8.891	6.113	9.117	4.715	1.596	1.716	nan	1.881	2.117	11.326
15745	chrX	71158804	71160977	+	0	NA	Intergenic	Intergenic	-50877	NM_001164190	17772	Mm.274981	NM_019926	ENSMUSG00000031337	Mtm1	AF073996|Mtm|mKIAA4176	X-linked myotubular myopathy gene 1	protein-coding	4.794	7.449	5.511	4.240	5.123	4.770	3.847	4.064	3.566	3.576	3.669	2.626	3.784	4.697	3.148	3.981	3.987	3.228	3.407	3.320	5.023	2.654	3.778	4.939	3.550
7970	chr2	13306219	13308459	+	0	NA	intron (NM_001081084, intron 58 of 66)	intron (NM_001081084, intron 58 of 66)	-35924	NM_009105	20163	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	4.564	1.518	0.596	4.662	1.388	0.679	3.767	2.917	3.463	2.826	1.512	0.821	2.620	3.190	3.923	3.813	3.079	4.626	0.705	0.608	0.666	0.931	0.602	0.086	4.145
5181	chr15	55211420	55213015	+	0	NA	exon (NM_145470, exon 6 of 9)	exon (NM_145470, exon 6 of 9)	78781	NM_001037937	97998	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding	4.394	1.265	0.861	2.108	0.985	0.230	4.404	7.181	nan	nan	1.145	1.136	4.465	3.437	3.890	nan	3.163	1.983	0.762	0.588	0.307	0.705	0.413	0.069	1.809
10362	chr4	108009266	108012104	+	0	NA	intron (NM_146255, intron 9 of 10)	intron (NM_146255, intron 9 of 10)	20301	NM_001285956	242608	Mm.74710	NM_172874	ENSMUSG00000028600	Podn	9430070G18|Pcan|SLRR5A	podocan	protein-coding	0.986	0.952	0.685	1.013	0.588	0.377	0.508	nan	0.878	0.813	0.553	1.803	0.413	0.578	0.690	0.877	0.702	nan	7.679	7.735	5.763	9.874	5.083	4.533	0.648
15004	chr9	43912572	43916081	+	0	NA	Intergenic	B4A|SINE|B4	-129058	NM_009382	21838	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding	4.449	1.584	0.484	5.067	3.241	1.542	2.048	1.469	2.834	7.077	3.057	0.795	2.478	7.302	nan	3.919	1.721	3.814	0.667	0.667	0.427	nan	0.665	0.324	7.320
14842	chr9	3017348	3020640	+	0	NA	Intergenic	GSAT_MM|Satellite|Satellite	19749	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	nan	nan	18.874	8.956	12.672	15.082	9.666	nan	10.393	7.906	8.892	13.086	6.856	5.587	3.060	nan	nan	nan	nan	13.726	30.238	3.351	12.566	20.892	nan
6841	chr17	72078564	72082141	+	0	NA	intron (NM_007439, intron 4 of 28)	intron (NM_007439, intron 4 of 28)	298405	NM_030179	78785	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	4.797	0.514	0.298	4.225	8.426	7.071	5.002	2.273	nan	6.518	3.127	1.152	5.918	7.100	3.743	5.316	5.455	4.455	1.299	1.957	1.901	1.815	1.109	1.549	6.287
952	chr1	182777554	182781822	+	0	NA	intron (NM_144796, intron 1 of 7)	intron (NM_144796, intron 1 of 7)	14782	NM_144796	96935	Mm.331052	NM_144796	ENSMUSG00000038576	Susd4	AI848994|E430021N18Rik|N28096	sushi domain containing 4	protein-coding	12.371	10.747	4.269	10.227	4.529	2.282	7.396	7.129	6.499	7.663	5.731	3.369	8.955	9.894	9.708	13.439	9.249	9.674	7.447	4.301	2.229	8.933	5.297	3.176	10.795
15693	chrX	18739763	18745832	+	0	NA	Intergenic	Lx2B2|LINE|L1	-281400	NM_175228	75905	Mm.159617	NM_175228	ENSMUSG00000037358	4930578C19Rik	-	RIKEN cDNA 4930578C19 gene	protein-coding	4.564	2.066	1.266	4.637	3.138	1.686	2.116	2.799	4.911	4.804	5.814	3.289	3.913	4.312	3.208	nan	2.748	6.540	1.205	0.883	0.343	0.639	0.269	0.211	2.961
2691	chr11	95925515	95927283	+	0	NA	Intergenic	Intergenic	-11528	NM_008081	14422	Mm.340702	NM_008081	ENSMUSG00000013418	B4galnt2	AI593864|Dlb-1|Dlb1|Galg2|Galgt2|Ggm3|Igf2bp1	beta-1,4-N-acetyl-galactosaminyl transferase 2	protein-coding	10.267	14.199	5.062	8.701	8.518	5.588	10.404	8.487	5.167	12.499	7.338	4.031	6.529	9.126	7.386	9.778	9.004	8.349	7.204	7.684	6.699	6.900	6.463	8.163	12.873
6758	chr17	56896373	56898164	+	0	NA	intron (NM_022328, intron 7 of 11)	intron (NM_022328, intron 7 of 11)	21635	NM_030141	78625	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	nan	1.871	0.596	4.226	1.777	1.311	2.885	4.449	1.334	5.324	2.526	0.745	2.121	4.547	3.268	3.793	3.183	2.966	3.768	2.177	1.391	3.779	5.065	4.480	6.126
4804	chr14	68284365	68285455	+	0	NA	Intergenic	Intergenic	-159906	NM_008691	18040	Mm.242832	NM_008691	ENSMUSG00000022054	Nefm	NF-M|NF160|NF165|Nef3|Nfm	neurofilament, medium polypeptide	protein-coding	2.142	1.134	0.233	2.152	0.897	0.639	1.943	1.339	1.928	3.292	0.842	0.368	4.089	3.322	3.099	4.524	1.979	3.751	0.485	nan	0.225	0.686	0.376		6.869
4498	chr14	20979752	20995723	+	0	NA	intron (NM_009502, intron 6 of 20)	intron (NM_009502, intron 6 of 20)	58304	NM_009502	22330	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	4.137	7.145	4.005	1.916	2.261	1.634	3.403	5.340	nan	1.948	1.279	0.845	2.517	3.627	4.421	5.208	3.105	3.329	0.557	0.934	0.766	nan	0.418	0.368	6.080
1071	chr10	4521339	4523947	+	0	NA	intron (NM_001195672, intron 5 of 10)	intron (NM_001195672, intron 5 of 10)	12771	NM_001195672	100504234	Mm.291807	NM_001195672	ENSMUSG00000019767	Ccdc170	Gm221	coiled-coil domain containing 170	protein-coding	6.819	7.502	1.890	5.029	2.025	1.278	5.285	4.169	2.757	6.867	3.399	1.996	4.958	6.976	5.683	6.882	4.688	4.907	3.335	2.674	1.739	3.528	3.422	1.949	9.363
12748	chr6	128942174	128946906	+	0	NA	intron (NM_027562, intron 1 of 6)	Lx3B|LINE|L1	10159	NM_027562	70809	Mm.439891	NM_027562	ENSMUSG00000000248	Clec2g	4632413B12Rik|Clr-c|Clr-d|Clrc|Clrd|Clrx|Ddv10|Ocilrp1	C-type lectin domain family 2, member g	protein-coding	4.360	6.594	3.431	3.160	1.934	0.681	5.193	4.701	3.299	2.950	6.449	4.584	4.430	2.609	4.040	nan	4.509	3.806	1.854	2.515	0.916	2.143	1.279	0.943	2.490
3058	chr11	118126169	118128193	+	0	NA	exon (NM_001167746, exon 2 of 81)	exon (NM_001167746, exon 2 of 81)	2038	NM_001167746	69926	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	2.839	7.601	3.051	3.047	4.396	2.126	1.872	2.497	1.883	3.369	0.672	0.400	2.039	3.828	2.359	5.040	3.853	3.745	0.826	nan	1.520	1.840	0.617	0.779	4.017
15739	chrX	70473387	70474885	+	0	NA	intron (NM_001033328, intron 1 of 5)	intron (NM_001033328, intron 1 of 5)	2907	NM_001033328	236848	Mm.24569	NM_001033328	ENSMUSG00000073139	Tmem185a	-	transmembrane protein 185A	protein-coding	4.812	10.136	1.786	7.912	1.364	0.567	2.826	4.905	3.884	9.111	4.319	2.060	3.536	4.493	5.784	8.358	2.278	7.040	5.111	1.815	2.301	5.786	2.528	2.409	12.368
9636	chr3	104173988	104177596	+	0	NA	intron (NM_001159354, intron 1 of 20)	ORR1D1|LTR|ERVL-MaLR	44614	NM_133853	99470	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding	4.321	0.546	0.254	2.624	4.216	2.797	5.393	2.025	4.539	3.926	1.262	0.638	5.237	5.768	nan	4.742	2.930	6.484	0.610	0.486	0.459	0.420	0.516	0.585	3.718
4331	chr13	100921595	100923954	+	0	NA	Intergenic	L1Md_A|LINE|L1	-89347	NM_022885	69048	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	7.061	1.109	1.036	2.191	1.788	0.940	3.600	4.459	2.717	2.652	1.987	0.651	2.634	4.414	4.095	3.016	3.455	3.405	0.562	0.705	0.475	0.507	0.321	0.388	3.408
14624	chr8	115508013	115512305	+	0	NA	Intergenic	Intergenic	196735	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.414	0.345	0.026	0.265	0.194	0.112	0.423	0.768	0.337	0.385	0.231	0.121	0.129	0.217	0.165	nan	0.664	0.322	3.953	5.086	3.663	4.281	4.070	3.306	0.241
10569	chr4	129315389	129318302	+	0	NA	intron (NM_009030, intron 11 of 11)	RMER16B3|LTR|ERVK	18525	NM_009030	19646	Mm.12145	NM_009030	ENSMUSG00000057236	Rbbp4	RBAP48|mRbAp48	retinoblastoma binding protein 4	protein-coding	5.248	5.283	1.516	7.230	2.891	1.708	4.630	4.534	4.817	6.447	4.775	2.033	6.258	7.031	7.102	8.477	4.413	6.967	5.200	2.411	2.193	5.642	3.350	2.717	11.699
11131	chr5	32434825	32442948	+	0	NA	Intergenic	B3|SINE|B2	-20084	NM_172707	19046	Mm.241931	NM_172707	ENSMUSG00000014956	Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding	12.828	5.505	1.645	14.437	9.274	5.144	10.913	10.605	8.748	13.948	11.986	7.098	9.721	12.762	11.457	11.061	9.153	11.417	5.783	3.176	3.034	6.695	4.607	5.327	13.791
4158	chr13	54729194	54735717	+	0	NA	intron (NM_001033364, intron 23 of 31)	RLTR20A4|LTR|ERVK	17419	NM_001316710	26913	Mm.41812	NM_012014	ENSMUSG00000069227	Gprin1	GRIN1|Z16	G protein-regulated inducer of neurite outgrowth 1	protein-coding	4.194	0.881	0.828	2.899	3.110	3.452	4.156	4.780	5.297	4.432	3.136	2.537	4.207	5.442	4.064	nan	4.452	3.778	1.435	1.581	1.184	1.571	1.299	1.258	nan
5388	chr15	77732779	77744927	+	0	NA	Intergenic	Intergenic	9732	NM_001168660	71898	Mm.422856	NM_173743	ENSMUSG00000068246	Apol9b	2310016F22Rik	apolipoprotein L 9b	protein-coding	8.192	nan	1.031	6.535	4.394	3.442	11.184	12.544	6.105	6.763	nan	2.886	11.685	10.873	10.023	8.624	nan	9.414	1.936	1.318	1.635	nan	1.712	1.885	10.714
6602	chr17	35938830	35947022	+	0	NA	Intergenic	MuRRS-int|LTR|ERV1	-4228	NR_028278	667766	Mm.29385	NR_028278		Gm8801	-	protein phosphatase 1, regulatory subunit 10 pseudogene	pseudo	5.603	1.507	0.897	6.720	5.907	5.303	5.396	5.744	4.547	5.296	2.601	2.641	4.313	6.888	4.442	5.190	4.710	6.146	1.032	1.733	1.867	1.568	0.861	0.849	5.312
13780	chr7	135064647	135079935	+	0	NA	intron (NM_001033420, intron 29 of 51)	intron (NM_001033420, intron 29 of 51)	123711	NR_046050	74314	Mm.415339	NR_046050	ENSMUSG00000100717	1700120G07Rik	-	RIKEN cDNA 1700120G07 gene	ncRNA	8.243	nan	0.980	7.735	5.301	3.797	10.090	12.619	nan	8.162	4.663	2.967	11.471	13.869	11.039	11.372	8.453	10.104	3.780	1.991	2.056	3.547	2.918	2.722	14.522
5817	chr16	14799687	14801401	+	0	NA	Intergenic	Intergenic	94685	NM_011415	20583	Mm.4272	NM_011415	ENSMUSG00000022676	Snai2	Slug|Slugh|Snail2	snail family zinc finger 2	protein-coding	0.472	0.521	0.531	0.297	0.152		0.297	1.038	0.457	nan	6.364	2.894	0.182	0.398	0.297	nan	0.444	0.685	0.826	0.520	0.286	0.453	0.512	0.365	0.586
13599	chr7	118081722	118088539	+	0	NA	Intergenic	Intergenic	31017	NM_170669	267019	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	5.706	1.312	0.741	5.221	5.479	3.000	6.134	6.798	5.378	7.276	3.310	1.273	7.422	nan	5.831	4.487	4.479	8.535	0.809	0.743	0.511	1.390	0.571	0.455	6.234
6393	chr17	24507360	24512983	+	0	NA	intron (NM_153792, intron 17 of 20)	intron (NM_153792, intron 17 of 20)	17767	NM_153792	224619	Mm.275150	NM_153792	ENSMUSG00000052752	Traf7	RFWD1	TNF receptor-associated factor 7	protein-coding	3.488	0.777	0.592	2.255	2.914	1.918	3.376	1.900	2.252	2.721	0.563	0.874	2.317	3.397	3.021	nan	3.017	2.868	1.578	1.978	1.548	1.827	0.742	0.800	3.934
9656	chr3	105548352	105549881	+	0	NA	intron (NM_001039347, intron 2 of 6)	intron (NM_001039347, intron 2 of 6)	90300	NM_019931	56543	Mm.44530	NM_019931	ENSMUSG00000040896	Kcnd3	AW045978|Kncd3|Kv4.3	potassium voltage-gated channel, Shal-related family, member 3	protein-coding	3.082	0.778	0.491	1.990	2.331	2.143	2.054	1.640	2.465	2.108	1.038	1.263	4.062	3.241	1.996	1.618	3.166	3.146	1.305	0.887	0.561	0.266	0.489	0.503	1.996
5949	chr16	25777701	25779399	+	0	NA	intron (NM_001127259, intron 3 of 13)	intron (NM_001127259, intron 3 of 13)	-23366	NM_001127263	22061	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	2.229	1.391	1.137	1.061	2.016	0.532	3.190	6.444	2.103	1.365	5.873	2.437	4.136	3.596	3.017	3.842	2.851	2.843	0.805	0.383	0.286	0.982	nan	0.420	2.648
179	chr1	53875289	53877631	+	0	NA	intron (NM_001001883, intron 17 of 28)	intron (NM_001001883, intron 17 of 28)	27036	NR_106149	102465783		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	7.088	3.253	3.162	3.268	3.749	2.585	3.439	5.472	3.724	3.546	5.917	2.980	3.411	4.143	3.567	4.790	3.252	3.979	1.089	1.884	1.881	0.761	0.909	1.162	3.331
8226	chr2	44969968	44973585	+	0	NA	Intergenic	Intergenic	51401	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	5.975	4.346	2.337	7.665	2.807	1.863	2.100	1.570	2.679	3.448	1.637	1.132	1.770	3.210	2.311	2.839	2.195	3.419	1.077	1.666	1.201	0.943	0.793	0.913	3.563
12525	chr6	98960671	98983790	+	0	NA	intron (NM_001347345, intron 11 of 19)	intron (NM_001347345, intron 11 of 19)	56068	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	4.005	2.073	1.222	4.411	2.486	1.189	1.752	1.928	3.257	3.385	4.516	2.308	2.110	2.928	nan	nan	2.784	4.089	nan	nan	1.987	7.329	3.796	2.868	2.885
12492	chr6	94188839	94191814	+	0	NA	intron (NR_130996, intron 1 of 1)	intron (NR_130996, intron 1 of 1)	47116	NR_130996	78178	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	2.945	0.567	0.121	2.006	2.207	1.346	4.993	6.320	2.846	2.049	2.821	2.179	3.826	5.362	4.134	4.896	2.468	3.875	nan	nan	0.462	1.031	0.464	0.545	3.139
8729	chr2	142692813	142694295	+	0	NA	intron (NM_001081133, intron 22 of 25)	Lx5c|LINE|L1	207910	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	6.112	0.566	0.288	2.043	1.851	1.319	3.212	3.229	2.855	2.841	1.306	1.719	5.606	4.759	2.538	3.759	5.081	3.836	0.627	0.744	0.787	0.461	0.993	0.152	3.344
15385	chr9	92144178	92149957	+	0	NA	Intergenic	Intergenic	-45869	NM_001195693	100504689	Mm.464262	NM_001195693	ENSMUSG00000095654	Plscr5	331000	phospholipid scramblase family, member 5	protein-coding	6.469	4.551	1.977	6.509	2.392	1.434	3.655	5.212	4.334	3.905	4.334	3.358	5.578	3.765	3.943	4.106	2.908	4.531	1.427	2.345	1.294	1.859	2.889	1.840	3.813
6760	chr17	56969010	56970396	+	0	NA	intron (NM_175731, intron 1 of 5)	MYSERV-int|LTR|ERVK	12423	NM_175731	171168	Mm.218784	NM_175731	ENSMUSG00000045019	Acer1	2310024P18Rik|AI662009|Alkcdase1|Asah3|Cer1	alkaline ceramidase 1	protein-coding	2.610	4.162	0.816	5.398	2.505	1.914	2.070	1.960	2.201	5.138	2.879	1.363	1.407	4.365	4.125	4.405	2.103	3.918	3.512	1.204	0.955	2.365	2.997	2.802	8.322
3705	chr12	107293850	107295903	+	0	NA	Intergenic	Intergenic	440612	NR_045973	74968	Mm.359821	NR_045973	ENSMUSG00000085641	4930465M20Rik	4930431H15Rik	RIKEN cDNA 4930465M20 gene	ncRNA	1.475	0.955	0.502	nan	0.493	0.182	0.914	1.354	nan	nan	0.533	0.195	1.656	1.446	2.325	3.548	2.574	1.909	0.808	0.558	0.179	0.459	0.143	0.342	5.031
9305	chr3	52403774	52406363	+	0	NA	Intergenic	Intergenic	136731	NM_019739	56458	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	6.151	2.282	0.659	6.149	4.430	3.278	4.136	5.411	5.268	7.651	1.872	1.818	8.523	8.005	4.884	6.106	3.812	6.440	0.897	0.817	0.749	3.302	0.661	0.535	7.874
15036	chr9	45714067	45715833	+	0	NA	intron (NM_001081270, intron 16 of 32)	intron (NM_001081270, intron 16 of 32)	113688	NM_001081373	214552	Mm.260103	NM_172531	ENSMUSG00000043987	Cep164	AI450905|BC027092|D030051D21|mKIAA1052	centrosomal protein 164	protein-coding	14.550	15.204	5.227	10.592	6.043	4.284	10.695	11.488	6.917	16.376	10.310	4.732	8.734	14.718	9.829	11.763	7.102	10.226	6.158	5.170	6.329	7.165	6.822	7.310	21.317
3948	chr13	34287352	34289248	+	0	NA	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	56882	NM_001033167	73102	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	1.566	nan	0.462	2.629	1.607	0.517	2.209	2.093	2.041	2.214	0.952	0.967	2.497	4.281	3.300	4.345	1.330	3.060	0.902	0.525	0.576	0.800	0.431	0.070	4.914
2499	chr11	77614002	77616651	+	0	NA	Intergenic	Intergenic	-7511	NM_144825	216965	Mm.340436	NM_144825	ENSMUSG00000017291	Taok1	2810468K05Rik|AU020252|D130018F14Rik|Map3k16|Markk|Psk2|mKIAA1361	TAO kinase 1	protein-coding	5.076	12.497	4.616	6.295	2.005	0.990	1.584	1.957	2.799	3.819	2.304	1.169	1.416	3.276	2.884	3.405	1.564	4.023	0.963	1.096	nan	0.972	0.609	0.411	4.809
7701	chr19	32284072	32286933	+	0	NA	intron (NM_001168525, intron 2 of 9)	intron (NM_001168525, intron 2 of 9)	63814	NM_001168525	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	8.316	5.610	2.525	9.509	5.146	1.904	7.381	9.521	6.783	6.724	5.294	2.497	6.529	7.833	8.170	8.473	8.777	8.693	nan	2.610	0.985	5.224	nan	1.215	10.547
13232	chr7	56777498	56780055	+	0	NA	intron (NM_008074, intron 5 of 9)	ORR1B2|LTR|ERVL-MaLR	539005	NM_021879	18431	Mm.137052	NM_021879	ENSMUSG00000030450	Oca2	D7H15S12|D7Icr28RN|D7Nic1|p|p<cas>	oculocutaneous albinism II	protein-coding	2.031	0.735	0.461	1.905	1.606	0.632	3.199	2.592	1.337	1.592	5.847	1.037	2.216	1.821	3.391	3.199	2.762	2.379	0.945	0.676	0.452	0.751	0.910	0.547	4.180
13329	chr7	82736577	82739540	+	0	NA	intron (NM_175317, intron 15 of 19)	IAPEz-int|LTR|ERVK	17586	NR_046004	77800	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	4.342	0.987	0.584	nan	5.482	2.412	4.114	3.002	4.518	4.129	1.190	1.719	9.089	6.325	4.376	4.993	4.635	6.461	0.949	1.029	0.496	0.743	0.767	0.591	nan
4016	chr13	41422604	41445649	+	0	NA	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	53234	NM_001111324	18003	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	5.969	nan	1.126	5.229	5.140	2.629	nan	5.203	nan	5.826	3.647	3.759	5.245	7.138	5.470	nan	3.727	6.154	1.602	1.854	1.272	2.450	1.455	1.080	nan
3882	chr13	23673436	23679192	+	0	NA	Intergenic	Intergenic	7645	NM_178189	319164	Mm.261973	NM_178189	ENSMUSG00000069270	Hist1h2ac	-	histone cluster 1, H2ac	protein-coding	8.257	7.781	3.802	8.100	7.014	4.078	4.102	5.512	5.255	4.784	6.351	4.230	5.124	7.352	7.343	6.519	4.903	8.542	5.777	2.362	1.463	5.475	3.393	3.181	7.144
10006	chr4	41294278	41301278	+	0	NA	intron (NM_026893, intron 6 of 8)	intron (NM_026893, intron 6 of 8)	17123	NM_026893	68970	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	6.227	3.291	2.790	3.223	7.434	5.519	3.889	5.716	3.034	4.058	3.875	2.944	3.040	5.781	3.197	3.911	3.801	nan	3.305	2.992	2.517	2.060	3.452	2.882	4.098
1830	chr10	126363606	126366194	+	0	NA	Intergenic	ORR1A3|LTR|ERVL-MaLR	345491	NR_105841	102465224		NR_105841	ENSMUSG00000098756	Mir378d	Gm27650|mmu-mir-378d	microRNA 378d	ncRNA	6.628	nan	0.915	12.106	4.675	2.867	5.581	7.542	5.228	8.344	4.092	2.310	8.014	10.192	6.157	7.312	3.677	8.482	2.659	1.985	1.956	2.772	3.856	3.649	9.861
3917	chr13	30199980	30202963	+	0	NA	intron (NM_153546, intron 3 of 12)	IMPB_01|Satellite|Satellite	64981	NM_153546	218121	Mm.89682	NM_153546	ENSMUSG00000038732	Mboat1	9130215M02Rik|BC023845|LPEAT1|Moact1|Oact1	membrane bound O-acyltransferase domain containing 1	protein-coding	2.780	0.551	0.475	1.135	4.330	2.531	3.579	4.181	2.547	2.216	3.325	3.167	3.508	5.765	3.069	2.988	2.046	2.918	0.639	0.536	0.198	0.437	0.533	0.222	2.388
3060	chr11	118178982	118181750	+	0	NA	intron (NM_001112700, intron 9 of 12)	intron (NM_001112700, intron 9 of 12)	32376	NM_001112700	19157	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	3.822	nan	0.611	2.383	6.801	3.970	nan	3.999	2.395	3.601	1.811	0.513	2.365	5.294	3.017	3.134	4.120	2.467	0.802	nan	1.337	0.759	1.051	0.920	2.478
14499	chr8	97428531	97429766	+	0	NA	Intergenic	Intergenic	-883175	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	4.454	1.809	1.138	4.276	2.758	1.132	2.860	5.239	1.414	2.262	1.253	0.617	2.340	4.177	2.527	4.512	2.630	2.777	5.004	7.415	3.774	8.320	5.096	2.594	4.327
3167	chr12	8457886	8464940	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	38572	NM_007483	11852	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	4.416	1.307	0.820	3.778	3.607	2.072	2.279	3.103	3.549	4.599	1.699	1.241	4.215	8.137	3.059	4.473	4.149	4.060	1.036	1.587	1.286	1.607	1.103	0.696	5.719
7411	chr18	79151805	79152864	+	0	NA	Intergenic	Intergenic	-42943	NM_053099	240427	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	4.083	1.343	0.493	1.063	0.804	0.228	2.982	3.936	1.870	nan	1.019	0.895	4.180	4.011	2.963	4.979	3.238	5.530	1.097	nan	0.446	0.491	0.234	0.372	6.160
9027	chr2	167565611	167570341	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	29781	NM_011427	20613	Mm.2093	NM_011427	ENSMUSG00000042821	Snai1	Sna|Sna1|Snail|Snail1	snail family zinc finger 1	protein-coding	5.308	1.469	0.935	2.668	4.367	2.506	1.908	3.408	1.862	3.043	2.440	1.443	1.348	nan	1.721	2.383	2.151	nan	nan	2.217	1.886	1.468	1.146	1.041	nan
6433	chr17	26669200	26673885	+	0	NA	Intergenic	MurERV4-int|LTR|ERVK	-4854	NM_025272	11974	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	5.888	7.691	2.223	5.927	3.420	1.260	2.188	3.351	3.286	3.596	4.440	2.137	2.233	3.901	3.114	3.398	1.440	3.522	1.020	1.691	1.111	2.851	0.437	0.253	3.112
13841	chr7	141477662	141481119	+	0	NA	intron (NM_001252588, intron 1 of 7)	B1_Mus1|SINE|Alu	3010	NM_001252588	64540	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	5.591	nan	0.402	1.941	1.703	0.599	6.358	3.476	3.735	3.770	4.573	2.817	7.485	5.564	5.239	5.535	5.263	4.541	0.553	1.013	0.355	1.610	0.473	0.321	6.152
5695	chr15	101156048	101171368	+	0	NA	Intergenic	RMER17C2|LTR|ERVK	-10417	NM_007395	11479	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	4.970	1.515	0.645	4.231	5.411	2.399	11.312	13.354	4.923	5.392	13.679	5.878	9.328	9.385	8.899	8.764	5.987	8.013	1.151	1.179	0.931	1.510	1.196	0.590	10.237
12008	chr5	151910384	151914172	+	0	NA	Intergenic	Intergenic	-261070	NM_027009	69263	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	3.740	5.972	3.865	nan	4.806	2.209	2.621	3.220	4.509	4.478	1.947	1.504	3.478	4.415	3.740	nan	2.582	4.333	0.813	1.057	0.669	1.515	0.906	0.325	3.319
4203	chr13	60808727	60811460	+	0	NA	Intergenic	L1_Rod|LINE|L1	-7249	NM_027344	70202	Mm.158337	NM_027344	ENSMUSG00000056728	Ctsll3	2310051M13Rik	cathepsin L-like 3	protein-coding	3.658	0.602	0.136	3.354	3.868	0.972	3.625	4.986	4.389	4.827	1.351	0.802	4.195	7.836	5.642	6.560	2.994	6.119	1.707	0.783	0.481	1.700	1.407	0.981	5.729
7163	chr18	36882124	36887921	+	0	NA	Intergenic	L1VL4|LINE|L1	-35283	NR_076393	627427		NR_076393	ENSMUSG00000063514	Gm6756	EG627427	3-phosphoglycerate dehydrogenase pseudogene	pseudo	9.170	1.647	0.365	5.861	4.012	2.333	8.974	12.339	4.577	4.175	3.539	5.104	9.269	6.729	9.226	7.300	5.341	8.908	0.710	0.867	0.725	0.700	0.839	0.513	8.917
11970	chr5	149361810	149366344	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-47729	NM_027519	70717	Mm.252139	NM_027519	ENSMUSG00000029659	Medag	6330406I15Rik|Awms3|MEDA-4|Meda4|mAWMS3	mesenteric estrogen dependent adipogenesis	protein-coding	10.318	7.404	3.647	10.067	7.310	4.706	7.916	8.410	nan	12.077	5.442	4.297	7.549	12.798	10.156	10.063	8.273	10.180	5.278	3.068	2.477	3.910	3.713	3.486	9.810
12742	chr6	128543957	128550429	+	0	NA	exon (NM_001001179, exon 28 of 36)	exon (NM_001001179, exon 28 of 36)	-20473	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	4.664	nan	0.678	2.299	2.396	1.876	3.571	8.591	3.309	3.921	4.248	3.791	4.732	6.340	6.325	8.141	10.214	3.866	4.651	3.788	3.246	5.553	4.089	4.117	3.885
7453	chr19	3623590	3625113	+	0	NA	intron (NM_008513, intron 7 of 22)	RLTR25B|LTR|ERVK	-48602	NM_028999	52036	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	2.620	0.830	0.527	2.749	1.283	1.459	5.700	5.393	nan	2.186	2.311	1.961	3.482	3.427	3.529	3.983	3.597	2.668	2.342	1.961	1.568	4.098	3.204	2.950	5.190
15534	chr9	114309479	114311475	+	0	NA	Intergenic	Intergenic	-19658	NM_007535	12046	Mm.378887	NM_007535	ENSMUSG00000053820	Bcl2a1c	A1-c	B cell leukemia/lymphoma 2 related protein A1c	protein-coding	7.276	11.701	2.623	9.263	3.090	1.869	6.403	6.968	5.007	10.123	5.965	3.179	6.026	7.654	7.059	8.403	4.541	8.108	3.645	1.800	3.191	4.898	2.793	4.072	14.634
8937	chr2	163253534	163260282	+	0	NA	intron (NM_001098799, intron 2 of 8)	intron (NM_001098799, intron 2 of 8)	31454	NM_001098799	269389	Mm.207709	NM_001098799	ENSMUSG00000074607	Tox2	AI851523|AV026525|BI987407|Gcx1|RxHMG1	TOX high mobility group box family member 2	protein-coding	2.483	0.533	0.532	1.612	1.985	1.331	2.212	3.332	1.532	1.837	0.371	0.485	3.319	3.955	2.938	3.804	5.833	nan	nan	0.510	0.797	0.605	0.853	0.922	6.004
10987	chr4	154577329	154584314	+	0	NA	intron (NM_001177995, intron 1 of 15)	intron (NM_001177995, intron 1 of 15)	55546	NR_045643	320939	Mm.436738	NR_045643		5930403L14Rik	-	RIKEN cDNA 5930403L14 gene	ncRNA	5.126	2.152	1.217	4.417	4.244	2.167	4.117	5.120	3.415	3.970	1.713	1.794	3.830	4.544	4.360	4.931	2.584	4.541	1.879	1.381	1.060	2.693	0.992	0.646	4.903
11893	chr5	140878470	140879809	+	0	NA	intron (NM_175362, intron 21 of 24)	RMER15|LTR|ERVL	-48708	NM_010302	14673	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	5.724	0.852	0.599	4.558	3.085	1.650	6.478	7.141	5.281	5.799	2.552	1.036	7.348	8.351	7.379	7.468	4.095	6.843	3.141	1.399	0.774	4.150	1.686	1.545	6.307
258	chr1	64906012	64907774	+	0	NA	intron (NM_001039493, intron 3 of 7)	intron (NM_001039493, intron 3 of 7)	49931	NM_001039493	241075	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	3.548	1.305	0.966	2.070	3.194	2.267	4.025	3.755	2.895	2.439	1.267	1.392	5.244	4.569	3.323	4.788	5.241	3.335	0.909	0.495	0.626	0.783	0.298	0.540	1.958
14638	chr8	119644579	119649426	+	0	NA	Intergenic	RLTR10B2|LTR|ERVK	-11322	NM_025734	66733	Mm.358699	NM_025734	ENSMUSG00000045246	Kcng4	4921535I01Rik|AW049024|KV6.3|KV6.4	potassium voltage-gated channel, subfamily G, member 4	protein-coding	3.186	1.515	0.914	2.610	1.443	1.035	2.815	6.879	3.474	2.737	7.679	4.484	3.945	3.329	4.672	6.209	3.215	5.596	0.761	0.741	0.625	1.056	0.739	0.575	3.718
2620	chr11	88723666	88726828	+	0	NA	intron (NR_038058, intron 2 of 3)	B1_Mus1|SINE|Alu	6604	NR_038058	193280	Mm.396842	NR_038058		C030037D09Rik	9330160M04	RIKEN cDNA C030037D09 gene	ncRNA	4.892	5.059	1.397	6.127	2.313	1.012	5.578	7.042	4.497	6.385	3.116	2.176	5.632	7.684	7.103	8.237	4.943	5.800	4.351	1.797	2.095	5.582	2.741	2.617	8.353
9485	chr3	90010815	90018263	+	0	NA	intron (NM_153489, intron 20 of 26)	intron (NM_153489, intron 20 of 26)	-3329	NR_106129	102465771		NR_106129	ENSMUSG00000098397	Mir7669	Gm27996|mmu-mir-7669	microRNA 7669	ncRNA	3.385	4.233	2.097	3.664	3.418	3.053	4.873	3.204	2.616	2.680	4.049	2.164	4.236	4.376	4.033	nan	3.651	4.371	nan	1.533	1.648	2.092	1.462	1.378	4.148
8137	chr2	32354380	32360273	+	0	NA	Intergenic	Intergenic	-3997	NM_010065	13429	Mm.44736	NM_010065	ENSMUSG00000026825	Dnm1	AI838169|Dnm|Ftfl|mKIAA4093	dynamin 1	protein-coding	3.757	1.637	1.090	2.907	3.279	2.727	7.319	7.938	nan	4.369	6.552	6.214	7.969	6.738	4.009	4.727	5.690	3.824	1.196	1.386	1.769	0.720	0.783	1.004	3.712
15488	chr9	107600821	107607650	+	0	NA	intron (NR_111986, intron 2 of 17)	intron (NR_111986, intron 2 of 17)	1167	NM_009153	20347	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	5.456	1.755	0.466	6.692	1.908	0.903	5.743	6.076	nan	3.673	4.438	3.319	3.600	4.743	4.404	6.736	2.147	4.473	2.033	1.654	1.509	3.324	1.491	0.977	10.040
10098	chr4	55026220	55027650	+	0	NA	intron (NM_172867, intron 7 of 12)	intron (NM_172867, intron 7 of 12)	78990	NM_172867	242466	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	2.718	nan	0.111	0.905	0.624	0.766	nan	1.883	1.110	0.776	0.658	0.160	3.330	3.639	1.617	3.922	1.488	1.841	nan	0.866	0.233	0.988	0.502	0.340	2.780
13494	chr7	107109328	107113376	+	0	NA	Intergenic	L1_Mur3|LINE|L1	-4493	NM_001162940	384732	Mm.457863	NM_001162940	ENSMUSG00000062987	Gm10081	EG384732|ENSMUSG00000060503	predicted gene 10081	protein-coding	5.734	2.430	1.065	6.348	2.691	1.977	1.566	3.468	3.839	4.133	5.948	2.096	2.891	3.735	2.256	nan	1.741	4.653	nan	0.909	0.773	1.297	0.662	0.533	2.793
13316	chr7	80728240	80735988	+	0	NA	intron (NM_016721, intron 26 of 37)	intron (NM_016721, intron 26 of 37)	-43237	NM_173863	70461	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	6.528	3.752	2.314	4.974	5.602	4.328	7.453	9.144	5.058	5.269	7.066	3.669	8.856	10.601	7.854	7.304	6.205	6.772	2.134	1.904	2.257	1.862	2.406	1.999	nan
4022	chr13	41532687	41533848	+	0	NA	Intergenic	Intergenic	-45907	NM_001111324	18003	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	3.378	1.296	0.661	4.351	1.836	1.986	2.478	1.401	4.747	4.371	0.705	0.585	3.518	3.596	3.426	4.714	2.648	4.806	1.544	0.408	0.881	0.883	0.543	1.359	4.066
14414	chr8	87497065	87515467	+	0	NA	intron (NR_125722, intron 1 of 3)	intron (NR_125722, intron 1 of 3)	33150	NR_125722	100040294	Mm.213632	NR_033430	ENSMUSG00000097248	Gm2694	C230036H16Rik|linc1582	predicted gene 2694	ncRNA	13.422	13.547	4.336	13.146	7.856	4.661	11.023	14.125	nan	11.642	9.832	5.052	14.164	15.479	12.632	14.701	10.183	10.968	nan	3.384	2.776	8.664	2.898	2.558	17.053
10279	chr4	94772039	94773817	+	0	NA	intron (NM_001290549, intron 1 of 22)	intron (NM_001290549, intron 1 of 22)	33639	NM_001290551	21687	Mm.14313	NM_013690	ENSMUSG00000006386	Tek	AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2	endothelial-specific receptor tyrosine kinase	protein-coding	4.941	5.525	2.639	4.117	4.697	1.427	2.828	2.496	2.871	4.272	6.314	1.745	2.364	3.908	3.167	2.847	2.386	2.977	2.915	1.940	1.591	4.366	3.723	2.298	3.610
15785	chrX	98834449	98837630	+	0	NA	intron (NM_001313755, intron 2 of 23)	MER57C2|LTR|ERV1	54986	NM_052976	94190	Mm.33536	NM_052976	ENSMUSG00000031214	Ophn1	C130037N19Rik|Wtgr	oligophrenin 1	protein-coding	7.489	7.822	2.723	5.728	3.462	1.762	4.257	5.680	4.945	5.712	4.637	3.206	4.805	7.295	6.286	6.450	4.207	6.068	4.899	3.356	1.895	4.536	3.760	2.354	6.058
2138	chr11	49015055	49019153	+	0	NA	Intergenic	L1_Mus1|LINE|L1	-24858	NM_011579	21822	Mm.15793	NM_011579	ENSMUSG00000078922	Tgtp1	Gtp2|Irgb6|Mg21|Tgtp	T cell specific GTPase 1	protein-coding	11.049	10.541	4.819	8.426	6.480	3.497	8.159	8.890	6.477	9.271	7.538	4.236	8.042	10.934	8.543	nan	8.209	8.528	6.675	6.433	4.383	nan	nan	5.157	9.674
6479	chr17	28484971	28489543	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-1108	NM_010220	14229	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	6.009	2.721	0.566	7.941	4.252	2.907	7.717	6.684	3.924	8.903	5.804	3.184	5.652	8.297	8.284	9.269	5.532	7.795	1.957	1.167	1.469	3.335	0.978	1.530	15.307
10093	chr4	53835930	53840586	+	0	NA	intron (NM_028053, intron 1 of 5)	intron (NM_028053, intron 1 of 5)	12213	NM_028053	52076	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	4.827	nan	1.529	5.485	2.775	0.977	nan	5.178	4.213	4.601	1.991	1.731	4.477	6.377	5.532	6.036	3.411	5.869	nan	0.810	0.658	2.072	0.772	0.772	4.256
7376	chr18	73993517	73995970	+	0	NA	intron (NM_172632, intron 1 of 5)	RSINE1|SINE|B4	-23164	NR_045390	77855	Mm.410760	NR_045390	ENSMUSG00000090263	D730045A05Rik	-	RIKEN cDNA D730045A05 gene	ncRNA	1.459	5.370	3.429	1.845	1.247	0.953	1.017	0.669	1.307	nan	2.801	1.947	1.586	0.696	1.311	0.748	0.823	0.930	3.690	4.162	3.926	3.780	5.949	4.254	0.578
141	chr1	40431921	40433336	+	0	NA	intron (NM_001294171, intron 1 of 7)	intron (NM_001294171, intron 1 of 7)	3058	NM_001294171	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	2.642	1.135	0.275	2.700	0.393	0.348	1.085	1.474	1.674	3.053	0.653	0.386	2.038	4.685	1.790	3.548	1.050	2.178	0.287	0.221		0.401	0.366	0.066	3.730
13624	chr7	119776257	119780631	+	0	NA	exon (NM_016870, exon 11 of 16)	exon (NM_016870, exon 11 of 16)	15614	NM_027698	71151	Mm.274160	NM_027698	ENSMUSG00000030929	Eri2	4933424N09Rik|Exod1|mKIAA1504	exoribonuclease 2	protein-coding	4.627	0.513	0.394	3.654	10.051	7.800	4.033	8.788	5.909	7.937	2.097	2.924	6.558	9.021	3.489	3.083	4.144	5.216	0.815	0.756	0.966	0.515	1.017	1.283	2.681
11461	chr5	96635405	96639733	+	0	NA	intron (NM_175473, intron 22 of 73)	B3|SINE|B2	-155816	NM_013470	11745	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	7.494	4.593	2.770	4.393	3.184	1.819	5.654	5.655	4.458	4.216	3.079	2.208	5.727	6.668	6.797	5.640	7.032	5.570	4.283	2.811	1.947	3.406	4.147	2.441	5.306
3043	chr11	117683469	117694727	+	0	NA	intron (NM_198022, intron 1 of 21)	B1_Mus1|SINE|Alu	34809	NM_198022	217351	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	5.370	11.474	4.577	5.123	4.182	3.499	nan	6.195	4.152	4.701	4.810	2.708	5.156	7.765	6.539	7.118	4.364	5.275	2.804	nan	2.708	2.982	3.322	3.109	6.342
4228	chr13	64411812	64414718	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	-19288	NM_053180	105278	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	4.801	5.463	2.056	6.528	5.746	3.769	6.375	5.591	3.886	5.312	3.822	2.225	6.095	8.018	6.786	5.174	2.882	7.342	3.447	3.226	2.514	4.843	4.425	4.600	6.509
1230	chr10	40229441	40232685	+	0	NA	intron (NM_001042556, intron 7 of 9)	B1_Mur1|SINE|Alu	15916	NM_001042556	67239	Mm.11480	NM_023323	ENSMUSG00000038510	Rpf2	2810470K21Rik|AU040229|AU043242|Bxdc1	ribosome production factor 2 homolog	protein-coding	5.825	0.721	0.481	2.688	2.951	1.619	5.386	5.959	5.463	4.684	9.107	7.581	5.262	5.246	5.794	5.931	3.699	5.451	1.763	1.089	0.645	2.281	0.971	0.737	5.248
2793	chr11	100840661	100842189	+	0	NA	intron (NM_001113563, intron 1 of 18)	intron (NM_001113563, intron 1 of 18)	9160	NM_001113563	20851	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	5.075	nan	0.887	5.215	6.127	4.932	5.268	5.633	5.399	4.586	3.013	2.313	4.063	6.391	4.847	5.515	3.706	4.872	1.251	nan	1.749	1.120	nan	nan	2.878
14777	chr8	127276962	127279478	+	0	NA	intron (NM_001309391, intron 3 of 24)	intron (NM_001309391, intron 3 of 24)	-21392	NM_001013581	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	4.004	nan	0.267	nan	0.418	0.196	nan	4.068	1.724	2.467	2.180	0.404	4.343	2.159	3.769	3.698	2.822	2.430	3.162	1.630	1.218	3.368	2.925	nan	6.728
6155	chr16	76363605	76374556	+	0	NA	intron (NM_173440, intron 1 of 3)	intron (NM_173440, intron 1 of 3)	3969	NM_173440	268903	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	7.245	8.060	3.567	5.474	3.188	1.702	5.517	5.988	4.658	7.595	4.053	3.242	6.728	5.917	6.454	8.826	5.112	nan	nan	1.382	1.154	2.253	1.192	1.187	8.529
13848	chr7	144586387	144591289	+	0	NA	3' UTR (NM_178642, exon 26 of 26)	3' UTR (NM_178642, exon 26 of 26)	-6402	NM_010175	14082	Mm.5126	NM_010175	ENSMUSG00000031077	Fadd	Mort1/FADD	Fas (TNFRSF6)-associated via death domain	protein-coding	2.924	nan	1.086	nan	2.157	1.853	1.236	0.929	2.945	3.456	0.594	0.452	4.441	4.892	2.215	1.823	3.157	4.046	0.645	0.455	0.539	0.609	nan	0.270	4.334
15636	chr9	123185946	123192379	+	0	NA	intron (NM_133974, intron 2 of 8)	MLT1A1|LTR|ERVL-MaLR	26876	NM_133974	109332	Mm.27519	NM_133974	ENSMUSG00000035498	Cdcp1	9030022E12Rik|AA409659|E030027H19Rik	CUB domain containing protein 1	protein-coding	nan	0.583	0.531	nan	nan	0.097	nan	nan	nan	nan	0.537	0.260	nan	nan	nan	nan	0.342	nan	3.045	1.479	1.003	4.845	1.746	1.197	nan
6387	chr17	24283460	24286583	+	0	NA	intron (NM_001031621, intron 22 of 29)	intron (NM_001031621, intron 22 of 29)	-33612	NM_007634	12449	Mm.77695	NM_007634	ENSMUSG00000072082	Ccnf	CycF|Fbxo1	cyclin F	protein-coding	4.203	0.675	0.709	2.439	6.224	7.142	7.391	7.630	4.384	3.278	3.753	3.666	4.346	6.885	5.910	4.365	4.384	4.473	0.911	0.879	0.785	0.345	0.834	1.093	3.824
10911	chr4	149765987	149773693	+	0	NA	intron (NM_027460, intron 1 of 6)	intron (NM_027460, intron 1 of 6)	4427	NM_027460	70556	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	1.858	nan	0.766	1.773	1.419	1.052	1.376	2.425	2.278	2.313	1.418	2.214	1.678	1.577	1.522	2.032	1.609	2.265	6.767	2.318	1.624	6.736	8.661	7.251	1.322
11789	chr5	135473467	135484214	+	0	NA	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	66282	NM_146001	215114	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	4.632	0.610	0.668	4.014	6.712	5.207	6.433	4.916	4.632	5.364	4.147	2.725	4.869	7.618	5.337	5.080	5.261	4.380	3.872	2.901	2.459	2.419	nan	5.077	5.068
14147	chr8	35867071	35879729	+	0	NA	intron (NR_046181, intron 1 of 2)	RCHARR1|DNA|hAT-Charlie	9557	NR_046181	330737	Mm.381743	NR_046181	ENSMUSG00000109761	5430403N17Rik	5430403N17	RIKEN cDNA 5430403N17 gene	ncRNA	10.537	6.244	1.899	5.716	4.554	2.804	9.230	14.543	7.104	10.601	4.462	5.729	10.852	12.180	12.190	13.348	10.017	9.080	4.222	2.922	3.493	9.553	2.085	2.375	16.773
11722	chr5	124924161	124930201	+	0	NA	Intergenic	Intergenic	64476	NM_001081750	269704	Mm.138617	NM_001081750	ENSMUSG00000079215	Zfp664	AW060232|D930038J03Rik|ZFOC1|Znf664	zinc finger protein 664	protein-coding	5.889	8.044	5.700	4.444	5.991	3.760	5.745	4.828	3.315	nan	2.648	2.705	4.056	5.700	nan	4.232	4.064	nan	nan	3.459	3.834	2.755	nan	3.300	nan
5865	chr16	19960140	19963741	+	0	NA	intron (NM_183390, intron 2 of 6)	Lx8|LINE|L1	21109	NM_183390	239743	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	7.496	3.321	1.737	3.706	2.713	1.886	4.401	3.081	4.495	5.051	1.250	1.166	7.042	5.606	4.246	6.427	5.023	7.308	0.762	0.984	0.751	0.532	0.648	0.499	4.838
12993	chr7	20456213	20457525	+	0	NA	Intergenic	L1Md_A|LINE|L1	-14276	NM_001166836	100042968	Mm.480292	NM_001166836	ENSMUSG00000094545	Vmn1r101	Gm4135	vomeronasal 1 receptor 101	protein-coding	4.864	19.354	6.503	6.305	3.851	2.367	4.166	4.674	3.597	5.260	5.463	3.862	4.873	4.571	4.398	4.209	1.914	5.192	0.993	1.364	1.374	1.107	1.035	0.300	5.176
12362	chr6	83527031	83528749	+	0	NA	intron (NM_009610, intron 1 of 8)	RMER4A|LTR|ERVK	8361	NM_009610	11468	Mm.292865	NM_009610	ENSMUSG00000059430	Actg2	ACTA3|Act-4|Act4|SMGA	actin, gamma 2, smooth muscle, enteric	protein-coding	2.334	0.564	0.821	1.751	2.110	0.897	4.458	1.915	1.606	2.304	1.433	0.746	5.267	4.612	4.753	5.828	5.826	4.709	nan	0.390	0.222	0.294	0.400	0.229	2.792
7446	chr18	85017650	85029901	+	0	NA	Intergenic	Intergenic	-72251	NM_025969	67105	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	tranlocase of inner mitochondrial membrane 21	protein-coding	nan	3.170	1.160	6.329	4.443	2.296	2.695	4.003	4.355	4.568	3.179	2.826	4.967	5.373	4.550	5.763	4.621	nan	2.143	2.054	1.171	2.440	1.526	1.042	nan
3590	chr12	87325150	87330315	+	0	NA	intron (NM_011479, intron 9 of 11)	intron (NM_011479, intron 9 of 11)	-28027	NM_001290302	217738	Mm.219363	NM_001290302	ENSMUSG00000050671	Ism2	Gm264|Thsd3	isthmin 2	protein-coding	2.595	2.332	1.129	2.002	0.856	0.372	1.527	1.213	1.851	1.735	2.278	1.340	1.629	1.679	1.697	2.471	1.690	3.355	4.353	1.892	1.150	5.232	2.326	1.535	2.648
1060	chr1	195392024	195396537	+	0	NA	Intergenic	Intergenic	-217565	NM_007758	12902	Mm.235387	NM_007758	ENSMUSG00000026616	Cr2	C3DR|CD21|CD35|Cr-1|Cr-2|Cr1	complement receptor 2	protein-coding	0.831	0.811	0.433	0.377	0.169	0.135	1.191	0.733	0.794	0.646	8.498	3.040	0.587	0.593	0.717	nan	0.801	0.827	0.768	0.551	0.294	0.840	nan	0.691	nan
11863	chr5	139060131	139062555	+	0	NA	intron (NM_008923, intron 6 of 10)	intron (NM_008923, intron 6 of 10)	-66390	NM_008808	18590	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	6.042	5.600	2.332	6.334	5.098	1.926	5.741	4.996	4.393	5.096	5.224	2.574	5.993	10.518	7.082	5.829	5.711	5.009	5.284	4.304	2.388	3.830	nan	5.480	5.713
3759	chr12	113842213	113844104	+	0	NA	Intergenic	Intergenic	299250	NM_174885	238406	Mm.188683	NM_174885	ENSMUSG00000043945	Adam6a	Adam6|tMDCIV	a disintegrin and metallopeptidase domain 6A	protein-coding	6.057	1.525	1.372	2.820	3.155	2.252	5.518	4.280	3.146	5.912	1.540	1.151	4.371	7.497	4.505	nan	3.814	4.725	1.035	0.275	0.678	0.759	0.368	0.572	10.692
13131	chr7	35838375	35844320	+	0	NA	Intergenic	L1MA9|LINE|L1	-38358	NM_177739	668501	Mm.286296	NM_177739	ENSMUSG00000044452	Zfp507	1810022O10Rik|A230056M16Rik|AL024009|AU021817|BB105092|Gm480|Znf507|mKIAA1084	zinc finger protein 507	protein-coding	9.475	6.766	1.842	8.642	4.683	2.316	5.314	10.667	7.004	10.214	4.986	2.064	9.250	10.084	7.804	8.064	6.847	9.769	4.112	1.876	1.716	4.290	2.907	2.976	10.590
2104	chr11	44428609	44443041	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	34723	NM_024475	79560	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	1.032	11.900	7.191	1.055	0.578	0.308	0.424	nan	0.689	0.864	0.417	0.396	0.282	0.569	0.503	nan	0.620	nan	nan	0.915	0.608	nan	nan	0.296	0.524
11721	chr5	124913306	124915587	+	0	NA	Intergenic	Intergenic	51741	NM_001081750	269704	Mm.138617	NM_001081750	ENSMUSG00000079215	Zfp664	AW060232|D930038J03Rik|ZFOC1|Znf664	zinc finger protein 664	protein-coding	2.629	1.040	0.461	1.679	2.433	2.558	7.017	2.759	2.341	2.060	0.838	1.270	3.879	4.003	2.991	3.399	nan	3.614	nan	0.898	1.227	0.809	nan	0.954	4.037
10582	chr4	129844020	129846766	+	0	NA	intron (NM_008974, intron 4 of 5)	intron (NM_008974, intron 4 of 5)	24685	NM_001164745	19244	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	3.055	1.367	0.393	7.405	1.621	1.210	3.839	4.610	2.158	3.038	1.689	1.299	3.524	4.458	nan	6.101	2.062	5.842	1.660	1.326	0.937	2.886	0.816	0.520	6.775
14978	chr9	41861633	41863590	+	0	NA	Intergenic	Intergenic	261678	NM_011436	20660	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	4.892	1.049	0.403	2.974	1.529	0.357	3.986	5.171	3.492	3.849	0.810	1.097	5.162	5.408	4.815	4.684	2.771	4.718	1.526	1.103	0.668	2.152	1.747	0.756	7.577
6171	chr16	85543108	85550562	+	0	NA	intron (NM_144853, intron 1 of 3)	intron (NM_144853, intron 1 of 3)	3538	NM_144853	224405	Mm.213203	NM_144853	ENSMUSG00000041134	Cyyr1	-	cysteine and tyrosine-rich protein 1	protein-coding	3.516	nan	0.409	5.543	1.207	0.865	0.997	1.254	2.563	2.453	0.923	0.700	0.939	1.740	1.761	2.530	1.627	4.337	0.833	0.770	0.450	nan	0.335	0.277	2.091
2894	chr11	106132546	106135077	+	0	NA	intron (NM_011947, intron 6 of 15)	tRNA-Ala-GCY_|tRNA|tRNA	26331	NM_172397	67803	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	10.713	11.669	3.518	10.698	5.740	3.754	8.352	8.938	nan	12.155	8.912	5.150	7.312	10.480	8.888	10.977	8.105	9.682	5.163	6.122	3.988	6.885	6.013	4.983	14.839
2126	chr11	48559219	48562330	+	0	NA	Intergenic	Intergenic	-239586	NM_008143	14694	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	3.077	0.654	0.274	2.116	1.599	1.013	0.510	nan	3.511	4.604	0.443	0.583	3.595	4.076	2.344	nan	2.474	2.796	nan	0.617	0.377	nan	nan	0.308	3.604
2858	chr11	103272640	103274969	+	0	NA	Intergenic	Intergenic	-6403	NM_016896	53859	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	8.579	13.135	6.547	8.323	7.258	4.203	5.394	8.326	5.220	8.511	4.919	3.005	5.651	9.556	7.020	8.743	5.551	7.886	4.398	5.599	3.835	6.303	4.177	3.041	8.350
10758	chr4	137621292	137622991	+	0	NA	intron (NM_001347227, intron 12 of 26)	B2_Mm2|SINE|B2	27952	NM_130879	170707	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	4.789	6.206	2.397	5.553	4.023	1.773	3.174	5.172	nan	2.499	1.495	1.288	4.691	5.139	4.720	4.624	3.322	4.665	3.276	1.655	0.522	3.181	nan	1.523	3.800
4221	chr13	63386139	63393599	+	0	NA	intron (NM_001347514, intron 4 of 15)	intron (NM_001347514, intron 4 of 15)	41876	NM_001347515	14088	Mm.126106	NM_007985	ENSMUSG00000021461	Fancc	Facc	Fanconi anemia, complementation group C	protein-coding	1.754	1.528	0.669	2.295	1.080	0.519	0.638	0.853	1.379	1.021	2.194	0.829	0.618	1.076	0.999	nan	0.655	1.877	5.565	1.682	1.520	5.379	2.987	1.983	1.634
15228	chr9	66459257	66463501	+	0	NA	intron (NM_145617, intron 43 of 77)	intron (NM_145617, intron 43 of 77)	53214	NM_175206	74165	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	3.554	1.987	0.990	3.457	1.831	1.279	4.113	4.094	3.947	4.407	1.559	1.689	5.993	5.053	5.220	5.424	3.937	4.681	nan	1.736	1.299	3.088	0.888	1.101	4.034
14217	chr8	47902520	47904738	+	0	NA	intron (NM_133791, intron 2 of 22)	intron (NM_133791, intron 2 of 22)	79147	NM_029383	75677	Mm.390033	NM_029383	ENSMUSG00000038064	Cldn22	2210404A22Rik|5330431C14Rik|9530051B05Rik	claudin 22	protein-coding	9.750	1.925	1.331	4.559	5.014	2.315	5.087	8.072	4.356	5.009	2.730	1.421	6.960	9.765	7.940	9.468	7.313	5.881	1.073	2.081	0.926	1.405	1.113	1.068	8.265
8644	chr2	127669247	127671963	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-13910	NM_001171187	17153	Mm.39040	NM_010762	ENSMUSG00000027375	Mal	Mpv17|Vip17	myelin and lymphocyte protein, T cell differentiation protein	protein-coding	1.286	1.154	0.488	1.472	0.596	0.413	0.757	0.990	2.091	1.328	0.357	0.407	1.159	1.360	2.222	4.634	3.586	2.407	nan	0.464	0.090	0.459	0.272	0.104	1.912
2526	chr11	79524510	79529257	+	0	NA	3' UTR (NM_010161, exon 2 of 2)	3' UTR (NM_010161, exon 2 of 2)	-3121	NM_001077496	216984	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	3.716	3.216	0.658	5.100	2.209	1.053	nan	1.967	2.533	6.025	1.335	1.501	2.963	5.634	nan	5.227	1.803	3.756	0.885	0.748	nan	0.970	0.841	1.098	4.412
972	chr1	184156628	184160173	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	123939	NM_022019	63953	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	6.469	0.793	0.671	1.646	4.279	2.615	3.711	4.223	3.475	6.954	1.391	1.529	5.019	7.022	3.823	5.875	4.022	4.952	0.724	0.768	0.791	0.831	0.587	0.631	4.636
7787	chr19	42522081	42524731	+	0	NA	intron (NM_177464, intron 1 of 6)	intron (NM_177464, intron 1 of 6)	4601	NM_177464	52013	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	nan	0.699	0.762	0.195	0.180	0.047	0.360	nan	0.252	0.299	0.190	0.247	0.080	0.139	0.219	0.430	nan	0.331	0.736	0.997	0.601	3.807	1.026	0.468	0.483
14652	chr8	120215967	120216912	+	0	NA	intron (NR_110496, intron 2 of 2)	intron (NR_110496, intron 2 of 2)	11791	NR_110496	434353	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	2.520	0.623	0.282	0.155		0.348	4.518	8.484	1.280	1.558	0.938	0.736	2.432	4.074	5.968	7.713	3.926	1.590	0.741	0.158	0.023	0.775	0.530	0.279	1.815
12101	chr6	29496512	29499618	+	0	NA	intron (NM_001029985, intron 13 of 37)	intron (NM_001029985, intron 13 of 37)	9887	NM_001029985	333088	Mm.332961	NM_001029985	ENSMUSG00000059022	Kcp	AW060220|CRIM-2|Crim2|Gm793|KCP-1	kielin/chordin-like protein	protein-coding	1.162	0.477	0.495	0.544	0.255	0.459	0.983	0.873	0.843	0.566	5.961	2.616	0.950	0.747	1.104	nan	0.722	nan	nan	0.546	0.236	0.312	0.472	0.231	0.613
10003	chr4	41212580	41214788	+	0	NA	intron (NM_026872, intron 11 of 28)	RSINE1|SINE|B4	61451	NM_026872	68926	Mm.41864	NM_026872	ENSMUSG00000028433	Ubap2	1190005K07Rik|AA408600|AU045235|UBAP-2|mKIAA1491	ubiquitin-associated protein 2	protein-coding	3.387	1.064	0.907	1.814	4.616	2.825	3.237	3.227	2.577	3.264	1.841	1.772	3.315	4.888	3.303	3.413	3.744	3.540	2.524	0.941	1.486	1.406	1.385	1.027	3.260
8397	chr2	80419122	80421936	+	0	NA	intron (NM_011356, intron 3 of 5)	intron (NM_011356, intron 3 of 5)	26867	NM_011356	20378	Mm.427436	NM_011356	ENSMUSG00000027004	Frzb	Frp|Sfrp3|frezzled|fritz|frzb-1	frizzled-related protein	protein-coding	8.220	3.466	0.757	9.080	5.197	4.056	8.844	9.674	6.440	13.030	5.861	5.000	7.993	7.785	9.233	10.332	7.991	9.707	5.922	2.214	3.828	6.058	3.764	5.150	13.804
3	chr1	6276073	6279487	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	63118	NM_009826	12421	Mm.293811	NM_009826	ENSMUSG00000025907	Rb1cc1	2900055E04Rik|5930404L04Rik|Cc1|FIP200|LaXp180	RB1-inducible coiled-coil 1	protein-coding	7.468	0.675	0.499	3.433	1.331	0.399	0.820	1.469	5.295	6.283	1.225	0.514	5.831	4.588	3.631	5.651	5.463	5.449	1.988	1.384	0.366	1.786	1.111	0.502	4.879
7802	chr19	44494880	44499272	+	0	NA	intron (NM_011720, intron 1 of 5)	intron (NM_011720, intron 1 of 5)	3604	NM_011720	22423	Mm.88365	NM_011720	ENSMUSG00000036961	Wnt8b	-	wingless-type MMTV integration site family, member 8B	protein-coding	5.018	1.170	0.672	3.794	5.872	4.140	6.759	6.358	4.785	7.434	1.609	1.132	6.126	8.332	5.091	8.275	6.311	6.072	0.398	0.498	0.547	0.624	0.494	0.425	8.418
5643	chr15	99413289	99427498	+	0	NA	Intergenic	Intergenic	27174	NM_001171035	110213	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	7.992	0.715	0.230	7.147	4.564	2.447	9.902	14.532	7.065	11.803	7.191	5.686	13.023	14.491	10.367	nan	8.011	10.807	1.012	1.183	1.144	2.656	0.747	0.718	15.023
248	chr1	64162462	64169702	+	0	NA	Intergenic	Intergenic	-44693	NM_033563	93691	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	13.432	5.910	2.563	9.554	7.369	3.167	9.291	7.513	5.745	9.304	7.564	4.100	9.190	9.768	8.089	10.104	nan	9.181	7.457	5.351	4.363	7.055	6.939	5.102	10.142
5608	chr15	97238422	97241063	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	-7365	NM_172293	239647	Mm.130036	NM_172293	ENSMUSG00000044250	Pced1b	Fam113b	PC-esterase domain containing 1B	protein-coding	1.458	1.543	0.491	1.792	1.171	0.459	4.322	3.514	0.853	1.376	0.410	0.343	3.472	2.561	2.863	3.464	2.670	2.013	1.846	1.727	0.720	4.082	0.436	0.347	5.662
802	chr1	163194710	163196927	+	0	NA	Intergenic	Intergenic	-110148	NM_030071	78258	Mm.78368	NM_030071	ENSMUSG00000071890	Mroh9	4921528O07Rik|Armc11	maestro heat-like repeat family member 9	protein-coding	1.873	0.611	0.116	nan	1.674	0.925	0.707	3.360	nan	2.209	4.838	3.790	nan	1.551	nan	1.423	1.866	1.765	0.527	0.381	0.441	nan	nan	0.285	nan
11204	chr5	40221775	40224688	+	0	NA	Intergenic	Intergenic	-578600	NM_010474	15476	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	7.453	0.448	0.804	2.774	6.059	3.952	7.410	5.477	6.032	5.298	7.795	7.924	8.332	5.761	5.349	4.561	4.867	4.863	1.209	1.260	1.775	0.797	1.679	2.131	2.854
3924	chr13	31515175	31516514	+	0	NA	Intergenic	Intergenic	-42326	NM_008239	15220	Mm.44235	NM_008239	ENSMUSG00000038415	Foxq1	HFH-1|Hfh1|Hfh1l|sa	forkhead box Q1	protein-coding	2.740	0.897	0.193	0.864	1.147	0.554	1.474	4.702	2.792	3.188	2.439	0.919	4.234	5.354	2.161	3.368	1.402	3.486	0.394	0.141	0.205	0.364	0.327	0.138	4.220
9153	chr3	19086690	19089808	+	0	NA	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	74816	NM_028840	74252	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	5.140	nan	1.809	4.890	3.464	2.538	7.138	5.603	3.299	5.476	4.722	2.282	6.575	8.215	6.381	6.230	5.031	5.768	2.461	1.681	1.061	3.283	2.303	1.837	7.772
3420	chr12	73764517	73770106	+	0	NA	intron (NM_001313977, intron 13 of 14)	intron (NM_001313977, intron 13 of 14)	-134013	NM_001313920	15251	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	6.581	3.021	1.161	4.339	3.045	1.615	4.640	4.338	3.567	4.520	2.420	1.251	5.202	nan	6.336	nan	4.861	5.158	5.649	1.712	1.365	4.181	3.123	2.991	10.221
8097	chr2	30740265	30747256	+	0	NA	Intergenic	Intergenic	22550	NR_037272	100526499		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0.720	0.697	0.338	0.617	0.462	0.294	0.965	1.666	nan	0.675	0.780	0.919	0.694	0.709	0.811	1.027	0.609	0.862	3.115	2.743	3.323	5.918	1.480	1.698	1.113
5130	chr15	37976888	37978022	+	0	NA	intron (NM_001112721, intron 52 of 58)	intron (NM_001112721, intron 52 of 58)	-16400	NM_199476	382985	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	4.096	1.505	0.949	1.782	1.096	0.770	4.850	5.812	3.435	2.171	1.887	0.841	8.002	3.748	3.870	4.716	4.529	4.280	1.385	0.442	0.411	nan	0.595	0.626	1.955
3269	chr12	33637172	33644272	+	0	NA	Intergenic	MER74C|LTR|ERVL	211098	NM_172253	28071	Mm.196472	NM_172253	ENSMUSG00000020561	Twistnb	2410173G11|2810024J17Rik|D16Wsu83e	twist basic helix-loop-helix transcription factor 1 neighbor	protein-coding	7.840	9.332	4.164	6.263	3.093	1.836	4.649	5.164	5.272	6.700	3.680	2.359	7.770	6.507	6.983	8.422	6.401	7.811	nan	1.162	1.084	2.739	1.237	1.088	9.376
14108	chr8	28082934	28092241	+	0	NA	Intergenic	L1_Mur3|LINE|L1	-2734	NR_033590	666422	Mm.484413	NR_033590	ENSMUSG00000110372	Gm8096	EG666422	3-phosphoglycerate dehydrogenase pseudogene	pseudo	8.755	nan	2.159	5.973	3.036	1.891	6.898	9.855	5.829	9.135	6.444	5.494	9.484	8.440	7.397	8.858	7.831	8.019	2.583	2.174	2.569	nan	2.348	3.098	11.726
2632	chr11	90524793	90528683	+	0	NA	intron (NM_011505, intron 16 of 17)	intron (NM_011505, intron 16 of 17)	111370	NM_011505	20913	Mm.207203	NM_011505	ENSMUSG00000020546	Stxbp4	6030470M02Rik|Synip	syntaxin binding protein 4	protein-coding	6.688	0.700	0.578	4.349	4.690	2.350	2.872	6.348	7.509	9.783	1.695	2.837	4.102	7.139	4.990	7.609	5.049	7.492	0.673	1.256	0.928	nan	0.501	0.497	3.880
5684	chr15	100899287	100910896	+	0	NA	intron (NM_001077499, intron 1 of 26)	(A)n|Simple_repeat|Simple_repeat	-31180	NM_011323	20273	Mm.385012	NM_011323	ENSMUSG00000023033	Scn8a	AI853486|C630029C19Rik|NaCh6|Nav1.6|dmu|med|mnd-2|mnd2|nmf2|nmf335|nmf58|nur14|seal	sodium channel, voltage-gated, type VIII, alpha	protein-coding	6.076	1.307	0.349	4.671	3.374	1.967	12.172	14.338	3.193	4.427	6.273	2.433	10.947	5.947	8.848	7.321	7.392	6.013	1.164	0.600	0.789	1.604	0.721	0.975	8.056
6261	chr16	95980622	95984415	+	0	NA	intron (NM_019537, intron 5 of 6)	B2_Mm1a|SINE|B2	8385	NM_019537	56088	Mm.396248	NM_019537	ENSMUSG00000022913	Psmg1	AW552102|Dscr2	proteasome (prosome, macropain) assembly chaperone 1	protein-coding	nan	1.455	0.840	1.224	0.751	0.340	0.659	0.943	nan	0.905	3.546	2.707	0.280	0.661	nan	0.893	0.543	nan	nan	2.479	1.976	4.180	1.089	1.033	0.741
6243	chr16	94632327	94635193	+	0	NA	intron (NM_001347731, intron 1 of 10)	intron (NM_001347731, intron 1 of 10)	22341	NM_001347731	13548	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|ENSMUSG00000074897|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	nan	1.293	0.483	1.241	1.025	0.347	2.148	2.693	nan	2.254	0.466	0.544	2.953	3.748	3.474	4.758	3.021	4.026	2.810	0.773	0.270	1.411	0.824	0.437	4.024
13164	chr7	52103571	52106580	+	0	NA	Intergenic	Intergenic	-89359	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	11.253	12.821	3.349	10.109	5.175	2.793	10.251	13.656	5.562	10.217	8.023	4.209	10.737	12.526	10.584	12.232	8.404	9.810	4.600	3.291	1.939	5.915	4.252	2.977	16.665
10416	chr4	117538210	117540317	+	0	NA	Intergenic	Intergenic	-11061	NM_001285902	140546	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	3.011	0.934	0.418	2.088	1.126	0.633	5.016	4.219	2.049	2.165	0.677	0.669	3.414	4.469	4.976	5.724	2.448	4.035	5.952	2.312	2.417	7.376	3.798	2.942	6.707
13975	chr8	8612768	8614429	+	0	NA	Intergenic	Intergenic	47175	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	2.746	0.863	0.500	1.229	2.243	1.512	2.508	2.308	2.256	1.700	2.199	1.251	2.571	4.218	3.499	3.119	2.441	3.140	0.693	0.468	0.516	0.942	0.576	0.790	2.660
13532	chr7	109103998	109105342	+	0	NA	Intergenic	Intergenic	-21339	NM_001311161	320360	Mm.71007	NM_178780	ENSMUSG00000048330	Ric3	E130307J04Rik	RIC3 acetylcholine receptor chaperone	protein-coding	1.451	1.518	0.691	0.971	0.937	0.516	1.121	3.279	1.144	1.367	0.948	0.413	1.578	3.207	1.938	1.897	1.867	1.717	nan	0.705	0.523	0.947	0.644	0.213	2.090
9998	chr4	40821514	40822797	+	0	NA	intron (NM_022305, intron 2 of 5)	intron (NM_022305, intron 2 of 5)	27983	NR_039584	100628614		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	nan	3.211	3.118	1.388	1.283	1.175	0.630	0.900	1.585	0.927	1.215	0.993	0.261	1.048	0.417	nan	0.468	nan	7.691	3.726	6.309	4.906	8.034	7.957	0.923
8349	chr2	72623438	72624993	+	0	NA	Intergenic	Intergenic	-79295	NR_040503	74541	Mm.410774	NR_040503	ENSMUSG00000085252	8430437L04Rik	-	RIKEN cDNA 8430437L04 gene	ncRNA	5.160	0.902	0.518	1.794	1.715	0.624	4.704	5.977	2.551	2.799	2.729	1.193	6.651	4.852	4.574	5.493	4.738	2.792	2.031	0.582	0.759	1.091	1.005	1.141	5.661
4869	chr14	77061670	77067488	+	0	NA	intron (NM_175369, intron 1 of 5)	intron (NM_175369, intron 1 of 5)	27807	NM_001310649	108811	Mm.102168	NM_175369	ENSMUSG00000034795	Ccdc122	4933415L06Rik	coiled-coil domain containing 122	protein-coding	3.186	0.489	0.401	2.847	3.674	2.105	4.771	6.298	4.499	4.376	4.261	3.230	4.302	5.400	5.329	6.058	3.115	5.082	1.484	1.010	0.705	1.403	1.446	0.953	3.490
2812	chr11	101503295	101508546	+	0	NA	intron (NM_009764, intron 15 of 22)	intron (NM_009764, intron 15 of 22)	37582	NM_009708	11858	Mm.378883	NM_009708	ENSMUSG00000001313	Rnd2	Arhn|Rohn	Rho family GTPase 2	protein-coding	3.625	nan	1.544	3.045	4.813	4.473	1.917	3.962	3.060	3.276	3.050	2.085	3.253	5.651	2.485	2.594	nan	2.730	2.042	nan	3.062	1.737	nan	nan	2.470
6361	chr17	15961209	15964997	+	0	NA	Intergenic	Lx2|LINE|L1	-136517	NM_178615	68799	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	6.796	5.116	1.944	8.313	3.907	1.407	6.904	6.746	5.658	9.135	4.880	4.164	5.108	7.948	8.343	9.084	6.415	7.630	0.644	1.700	1.504	3.390	0.616	0.601	12.327
560	chr1	129248773	129250458	+	0	NA	Intergenic	Intergenic	-23689	NM_172485	210417	Mm.380518	NM_172485	ENSMUSG00000042581	Thsd7b	1700074E13Rik|B930082A18|D130067I03Rik	thrombospondin, type I, domain containing 7B	protein-coding	5.072	nan	0.519	1.246	1.795	0.420	2.726	5.514	1.729	1.564	1.606	1.422	5.003	3.454	3.751	4.953	3.369	2.897	nan	0.703	0.248	1.939	1.239	1.111	2.140
13284	chr7	74454851	74456347	+	0	NA	intron (NM_001038643, intron 2 of 10)	RMER12C|LTR|ERVK	99181	NM_023908	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	3.446	1.655	1.457	nan	3.203	1.280	3.766	4.891	3.283	4.094	1.502	3.065	6.849	3.455	3.502	3.044	3.501	4.099	2.781	1.637	0.714	1.853	3.015	1.266	1.085
2830	chr11	102291182	102295648	+	0	NA	intron (NM_001098836, intron 6 of 12)	intron (NM_001098836, intron 6 of 12)	3214	NM_001098836	217218	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	5.616	9.690	3.847	5.979	3.167	1.585	2.990	2.984	2.934	4.240	2.641	1.455	2.622	4.640	4.175	5.513	nan	4.476	2.395	nan	2.366	4.873	nan	nan	6.782
798	chr1	162721315	162723578	+	0	NA	intron (NM_001081290, intron 3 of 34)	intron (NM_001081290, intron 3 of 34)	18110	NM_001081290	226562	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	3.355	17.511	6.874	6.547	2.066	1.361	1.335	1.898	2.687	6.468	2.705	2.147	2.227	3.741	4.758	4.791	1.610	4.461	nan	0.819	1.565	3.046	nan	1.486	6.876
898	chr1	174410914	174416876	+	0	NA	Intergenic	Lx5c|LINE|L1	-16535	NM_146761	258756	Mm.223188	NM_146761	ENSMUSG00000051509	Olfr414	MOR103-10	olfactory receptor 414	protein-coding	3.111	1.554	0.879	1.039	0.734	0.317	4.031	2.982	0.779	1.253	2.266	1.018	2.269	nan	2.671	4.279	2.770	1.983	5.331	5.065	2.114	5.139	6.995	4.735	3.262
3670	chr12	103697420	103699556	+	0	NA	Intergenic	ORR1C2|LTR|ERVL-MaLR	-2959	NM_026687	68348	Mm.20149	NM_026687	ENSMUSG00000021081	Serpina1f	0610012A11Rik|AI327419|Serpina2|epserin	serine (or cysteine) peptidase inhibitor, clade A, member 1F	protein-coding	5.429	1.000	1.269	nan	4.125	3.451	4.608	3.184	nan	3.302	1.326	1.820	5.791	6.901	4.426	4.992	4.646	4.226	0.715	1.427	0.742	1.142	0.603	0.694	4.224
7391	chr18	75178363	75184530	+	0	NA	intron (NM_027727, intron 13 of 16)	intron (NM_027727, intron 13 of 16)	115871	NR_045394	100503117	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	6.345	nan	1.381	5.607	7.760	6.804	6.044	8.767	5.311	nan	3.361	1.845	8.211	10.096	5.781	5.681	5.736	5.746	2.738	nan	2.303	2.063	3.147	3.284	7.756
14756	chr8	126240698	126243364	+	0	NA	Intergenic	MTC|LTR|ERVL-MaLR	-56548	NM_175434	210027	Mm.405238	NM_175434	ENSMUSG00000057060	Slc35f3	B230375D17Rik	solute carrier family 35, member F3	protein-coding	2.944	nan	0.245	nan	3.807	1.916	nan	nan	2.100	2.554	0.873	1.452	2.704	5.547	nan	3.596	0.990	nan	nan	1.027	0.796	nan	0.879	nan	nan
7239	chr18	54020219	54026355	+	0	NA	Intergenic	Intergenic	161174	NM_152809	70425	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	6.070	nan	2.392	nan	3.685	3.101	4.408	6.216	3.205	7.228	3.372	3.571	nan	4.867	3.805	3.906	4.454	nan	nan	3.767	3.132	nan	3.777	4.453	nan
1273	chr10	44283964	44286788	+	0	NA	intron (NM_001314013, intron 1 of 6)	intron (NM_001314013, intron 1 of 6)	17037	NM_053069	11793	Mm.22264	NM_053069	ENSMUSG00000038160	Atg5	2010107M05Rik|3110067M24Rik|AW319544|Apg5l|Atg5l|C88337|Paddy	autophagy related 5	protein-coding	2.247	nan	1.044	0.868	1.654	0.666	1.518	2.937	1.387	1.507	7.252	1.528	0.752	1.046	0.946	1.092	1.426	1.530	nan	0.572	0.567	0.579	0.817	0.341	0.905
15753	chrX	71669122	71675714	+	0	NA	Intergenic	L1MEc|LINE|L1	8751	NM_001308501	14765	Mm.33336	NM_010340	ENSMUSG00000056380	Gpr50	H9	G-protein-coupled receptor 50	protein-coding	5.898	3.392	1.182	3.958	2.110	0.941	3.199	5.675	3.280	4.190	4.489	2.069	4.096	5.741	4.829	6.325	2.832	5.020	2.196	1.167	0.642	2.598	1.007	0.885	5.916
15683	chrX	12856725	12860297	+	0	NA	Intergenic	Intergenic	-78362	NM_001272033	245350	Mm.302695	NM_001272033		AA414768	OTTMUSG00000017000	expressed sequence AA414768	protein-coding	8.596	8.700	2.720	9.466	7.222	4.832	6.456	9.851	4.679	13.007	5.910	3.693	6.191	9.934	7.267	8.382	8.966	6.850	7.089	4.508	4.701	8.049	3.716	4.479	11.390
451	chr1	93076574	93077812	+	0	NA	intron (NM_001294150, intron 3 of 46)	intron (NM_001294150, intron 3 of 46)	5287	NM_001294150	16560	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	3.948	nan	0.931	4.304	1.649	1.015	2.171	1.762	3.298	5.949	1.360	1.462	2.510	3.953	3.863	4.499	2.488	5.734	nan	0.621	0.602	2.082	0.904	1.431	6.722
14761	chr8	126543825	126545729	+	0	NA	Intergenic	Intergenic	48659	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	6.787	12.232	2.658	8.306	3.125	2.645	5.579	8.040	4.288	10.210	5.269	3.485	7.421	6.285	8.826	11.776	6.224	8.341	4.736	1.737	3.729	8.512	2.274	4.201	14.717
7573	chr19	10584533	10586648	+	0	NA	intron (NM_001282067, intron 6 of 8)	B2_Mm1t|SINE|B2	-8204	NR_126092	72982	Mm.391194	NM_028411	ENSMUSG00000024666	Tmem138	1700113I01Rik|2900055D14Rik	transmembrane protein 138	protein-coding	8.429	1.271	1.480	4.296	4.555	2.618	3.664	5.399	4.065	5.007	2.325	0.975	3.135	7.854	3.771	5.002	7.631	4.832	0.898	2.103	0.789	1.176	1.519	0.626	4.340
7632	chr19	21718173	21721821	+	0	NA	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-58343	NM_001033759	83921	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	7.015	5.941	2.738	3.689	4.336	1.983	4.213	8.183	4.307	4.071	3.853	1.655	4.607	5.438	4.396	6.024	5.217	6.738	0.922	1.505	0.632	1.313	2.664	1.782	5.446
6227	chr16	93363615	93366474	+	0	NA	Intergenic	Intergenic	-4676	NR_030429	791074		NR_030429	ENSMUSG00000076457	Mir802	Mirn802|mir-802|mmu-mir-802	microRNA 802	ncRNA	nan	0.586	0.365	0.273	0.218	0.146	0.906	1.159	nan	0.480	5.948	0.888	0.555	0.442	nan	0.807	0.669	nan	nan	0.421	0.557	0.398	0.429	0.201	0.639
2448	chr11	74536796	74538300	+	0	NA	intron (NM_001015046, intron 2 of 24)	intron (NM_001015046, intron 2 of 24)	52610	NM_001015046	380711	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	14.819	23.738	7.174	23.228	8.879	8.745	14.911	12.574	9.509	23.670	12.148	6.155	12.750	15.207	16.474	16.658	9.360	16.221	8.812	5.054	8.715	11.260	6.445	9.594	24.558
2969	chr11	114034558	114046856	+	0	NA	intron (NM_172800, intron 1 of 44)	intron (NM_172800, intron 1 of 44)	25244	NM_172800	237979	Mm.130504	NM_172800	ENSMUSG00000041592	Sdk2	4632412F08Rik|5330435L01Rik|Sdk-2|mKIAA1514	sidekick cell adhesion molecule 2	protein-coding	0.283	nan	0.288	0.394	0.114	0.072	nan	nan	0.167	nan	0.232	0.106	0.085	0.144	0.184	0.439	0.241	nan	5.671	nan	2.969	7.577	3.384	2.790	0.392
7898	chr19	56795172	56802405	+	0	NA	exon (NM_170757, exon 10 of 15)	exon (NM_170757, exon 10 of 15)	14895	NM_170757	213993	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	4.149	nan	0.468	7.935	1.537	0.647	3.454	nan	2.640	5.669	0.873	1.050	1.660	3.249	4.479	4.596	1.886	7.939	0.748	0.500	0.678	0.866	0.573	0.627	9.232
4557	chr14	27326619	27327697	+	0	NA	intron (NM_001289686, intron 4 of 12)	Lx8|LINE|L1	-8879	NM_001289687	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	3.017	0.715	0.451	1.591	1.613	1.259	3.116	5.208	3.484	3.012	4.686	3.802	3.509	3.876	4.142	3.490	3.197	3.768	2.529	1.163	0.520	nan	0.807	0.475	2.558
2721	chr11	97240720	97247047	+	0	NA	intron (NM_008942, intron 5 of 22)	intron (NM_008942, intron 5 of 22)	36693	NM_008942	19155	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	2.058	nan	0.550	1.282	1.419	0.988	1.861	4.653	1.524	1.675	1.046	0.982	3.848	2.350	1.358	2.368	2.401	1.910	1.011	nan	1.005	1.041	nan	nan	0.766
12605	chr6	114765859	114773360	+	0	NA	intron (NM_001253718, intron 18 of 19)	(CA)n|Simple_repeat|Simple_repeat	126512	NM_001253717	74244	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	4.263	1.311	0.654	3.439	1.427	0.744	7.175	2.981	3.329	4.121	2.806	1.419	4.827	4.015	6.141	11.334	5.908	4.626	1.422	0.703	0.950	1.903	nan	0.718	9.272
3595	chr12	88134573	88138288	+	0	NA	Intergenic	MERV1_I-int|LTR|ERV1	45464	NM_001105254	100039315	Mm.426539	NM_001105254	ENSMUSG00000066027	Gm10436	ENSMUSG00000072907	predicted gene 10436	protein-coding	5.240	2.682	0.850	3.725	2.467	1.746	2.313	4.133	2.337	2.416	2.104	1.770	2.882	4.058	3.580	4.192	2.643	4.186	1.601	1.335	1.349	2.837	1.179	1.172	6.687
4788	chr14	66489590	66503927	+	0	NA	Intergenic	Intergenic	-138493	NM_001271759	11549	Mm.57064	NM_013461	ENSMUSG00000045875	Adra1a	Adra1c	adrenergic receptor, alpha 1a	protein-coding	3.729	0.931	0.676	1.423	1.986	1.092	8.321	6.788	3.431	2.834	3.111	4.882	5.629	4.500	5.592	4.452	2.534	3.646	0.833	nan	0.731	0.834	0.919	0.770	4.353
14399	chr8	86238605	86242002	+	0	NA	Intergenic	L1Md_T|LINE|L1	326287	NM_172912	244562	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding	6.053	7.348	3.132	5.157	6.073	4.104	6.104	6.823	nan	5.278	3.620	3.309	4.996	7.616	7.350	7.631	6.348	5.773	2.932	2.606	3.905	4.185	2.161	3.025	8.601
13789	chr7	135669959	135683036	+	0	NA	intron (NM_001316681, intron 14 of 17)	B3|SINE|B2	-24183	NR_015548	67765	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	3.627	nan	0.893	3.729	3.231	2.193	2.340	6.401	nan	3.602	3.693	2.770	2.661	4.386	3.155	2.978	2.253	4.211	3.705	2.141	2.093	4.219	1.528	1.352	4.715
11034	chr5	17381208	17384629	+	0	NA	Intergenic	Intergenic	-93204	NM_027609	70935	Mm.332225	NM_027609	ENSMUSG00000058643	Speer4f1	4922502J04Rik|SPEER-4F|Speer4f	spermatogenesis associated glutamate (E)-rich protein 4F1	protein-coding	5.474	0.547	0.526	5.036	4.016	1.967	4.744	5.028	5.858	6.312	2.735	1.311	5.397	5.483	6.518	5.549	5.204	8.637	0.648	1.000	0.331	0.675	0.578	0.412	1.833
8810	chr2	152167241	152177564	+	0	NA	Intergenic	RMER19B|LTR|ERVK	28793	NM_009328	21407	Mm.3881	NM_009328	ENSMUSG00000068079	Tcf15	Meso1|bHLH-EC2	transcription factor 15	protein-coding	6.044	1.530	0.744	2.691	3.299	2.744	6.012	11.162	3.171	3.185	1.718	1.887	4.686	4.386	3.625	5.626	5.867	3.454	nan	1.103	1.907	1.902	1.459	1.534	6.326
4909	chr14	99696895	99710525	+	0	NA	Intergenic	Intergenic	405019	NM_009769	12224	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding	4.933	nan	0.374	4.842	4.325	2.361	4.851	8.321	7.633	8.423	7.033	6.789	6.388	8.067	8.306	8.955	4.410	8.379	4.523	2.066	1.517	3.743	3.921	3.349	7.516
4384	chr13	109058232	109062924	+	0	NA	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-264166	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	nan	nan	0.556	0.713	0.348	0.260	0.356	0.568	nan	nan	0.450	0.307	0.444	0.389	0.686	0.684	0.462	nan	2.603	2.549	1.954	nan	1.499	1.181	0.578
11638	chr5	118788682	118791919	+	0	NA	Intergenic	Lx8|LINE|L1	-162039	NR_040694	74627	Mm.410828	NR_040694	ENSMUSG00000107144	4930413E15Rik	-	RIKEN cDNA 4930413E15 gene	ncRNA	5.948	1.648	1.233	6.856	8.081	5.834	6.539	3.883	7.044	8.242	5.888	2.122	7.092	5.542	4.667	6.019	5.661	5.874	nan	nan	1.124	0.918	nan	1.144	5.890
10790	chr4	138802311	138810480	+	0	NA	intron (NM_011110, intron 1 of 4)	intron (NM_011110, intron 1 of 4)	12862	NM_011110	18784	Mm.486532	NM_011110	ENSMUSG00000041193	Pla2g5	PLA2|sPLA2	phospholipase A2, group V	protein-coding	4.519	1.881	0.721	4.350	3.749	1.608	6.631	3.211	nan	4.508	5.772	3.110	3.708	7.126	5.232	5.428	2.239	5.571	0.848	0.820	0.565	2.788	nan	0.400	6.173
8743	chr2	145645454	145650736	+	0	NA	Intergenic	RMER17A|LTR|ERVK	-53100	NR_033220	408057	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	8.340	0.825	0.654	4.113	5.259	2.810	7.748	8.373	4.715	5.727	4.221	2.086	7.155	7.233	6.295	7.285	6.460	7.127	nan	1.259	0.655	0.903	1.259	0.858	6.512
10168	chr4	62732721	62734823	+	0	NA	Intergenic	RSINE1|SINE|B4	59798	NM_001310706	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	3.599	nan	0.917	0.842	0.763	0.609	8.374	4.046	1.046	0.867	0.420	0.441	4.218	5.609	4.975	5.191	2.674	2.579	nan	0.571	0.376	0.956	1.072	0.866	5.314
3331	chr12	55795826	55797160	+	0	NA	intron (NM_001003719, intron 1 of 39)	B1_Mus1|SINE|Alu	25023	NM_019994	56784	Mm.292180	NM_019994	ENSMUSG00000021027	Ralgapa1	2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884	Ral GTPase activating protein, alpha subunit 1	protein-coding	12.200	9.698	6.084	10.213	7.678	5.675	8.362	8.577	5.662	10.709	7.107	4.583	10.304	11.782	9.616	10.140	9.568	7.903	5.149	4.786	6.242	5.278	5.481	7.565	16.229
5335	chr15	75464415	75465997	+	0	NA	Intergenic	RMER15|LTR|ERVL	15754	NM_001347049	102637705		NM_001347049	ENSMUSG00000093626	Ly6l	Gm20654	lymphocyte antigen 6 complex, locus L	protein-coding	1.990	nan	1.270	nan	0.278	0.235	nan	2.296	1.239	nan	nan	0.164	3.580	3.395	1.319	1.316	1.973	1.087	5.314	4.418	1.281	8.769	3.021	2.298	1.414
5148	chr15	38522794	38524887	+	0	NA	Intergenic	Intergenic	-4574	NM_018745	54375	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	5.451	1.039	0.763	2.405	3.960	3.093	6.981	6.628	4.448	5.070	5.092	1.902	7.836	8.614	4.854	5.507	5.798	4.792	0.505	0.334	0.662	nan	0.509	0.682	5.261
9932	chr4	10942087	10952457	+	0	NA	Intergenic	Lx6|LINE|L1	60347	NM_175175	71801	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	5.309	2.144	1.820	3.369	5.800	4.848	4.726	5.104	4.302	3.917	2.712	1.185	5.209	6.857	5.103	6.216	4.157	6.024	1.222	nan	1.222	0.745	1.439	1.285	5.523
9906	chr4	6902880	6909133	+	0	NA	intron (NM_145711, intron 1 of 8)	intron (NM_145711, intron 1 of 8)	84717	NM_145711	252838	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	1.020	3.662	2.081	1.213	0.793	0.421	0.564	nan	1.698	1.408	0.395	0.556	1.170	1.050	1.198	1.448	0.946	2.367	5.263	nan	1.556	6.166	3.011	1.633	0.879
540	chr1	127414959	127417062	+	0	NA	intron (NM_145128, intron 12 of 17)	intron (NM_145128, intron 12 of 17)	211024	NM_145128	107895	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	7.133	1.657	0.731	5.058	3.766	2.636	6.782	7.206	4.300	4.188	6.104	4.057	6.753	5.759	5.622	8.595	4.781	5.830	nan	1.462	1.513	0.983	1.859	1.550	4.405
15114	chr9	57268355	57270276	+	0	NA	Intergenic	Intergenic	-6716	NM_028820	74211	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	7.624	11.931	4.096	6.667	4.560	2.356	7.305	7.287	4.849	7.219	6.211	3.746	6.398	6.849	9.216	8.602	5.160	7.088	6.720	2.938	3.151	8.929	4.482	3.956	12.990
6673	chr17	46403032	46405428	+	0	NA	intron (NM_207671, intron 5 of 9)	L1MC4|LINE|L1	20464	NM_021346	57908	Mm.439916	NM_021346	ENSMUSG00000015597	Zfp318	2610034E08Rik|D530032D06Rik|TZF|Znf318	zinc finger protein 318	protein-coding	2.450	0.864	0.384	2.340	1.468	1.224	3.520	3.276	1.926	2.339	2.229	1.053	2.086	4.746	2.506	4.431	nan	3.937	0.850	0.287	0.595	1.734	0.530	0.333	5.393
1615	chr10	93592060	93593000	+	0	NA	intron (NR_045810, intron 1 of 3)	intron (NR_045810, intron 1 of 3)	-2872	NM_027246	69878	Mm.259642	NM_027246	ENSMUSG00000020018	Snrpf	2010013O18Rik|SMF|sm-F|snRNP-F	small nuclear ribonucleoprotein polypeptide F	protein-coding	3.307	0.950	0.899	1.376	1.457	1.146	3.883	3.316	2.006	1.879	nan	1.259	2.908	4.106	3.385	3.578	3.159	3.002	nan	1.136	0.319	1.421	0.987	0.305	3.406
13423	chr7	96326242	96327432	+	0	NA	intron (NM_001310760, intron 1 of 32)	IMPB_01|Satellite|Satellite	15127	NR_046043	670727	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	OTTMUSG00000021245	predicted gene 15412	ncRNA	2.575	2.760	1.467	2.295	1.080	0.101	1.831	2.286	2.916	2.132	5.989	1.693	4.064	3.709	4.341	3.456	2.605	4.265	nan	0.555	0.230	0.881	0.362	0.101	2.618
3065	chr11	118259527	118265719	+	0	NA	intron (NM_001033528, intron 18 of 20)	intron (NM_001033528, intron 18 of 20)	-14031	NM_011180	19157	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	6.811	nan	2.997	7.130	3.914	2.314	nan	nan	4.736	nan	3.315	3.209	5.363	7.090	6.649	7.425	4.698	nan	4.604	nan	1.943	4.570	3.203	2.298	8.400
7959	chr2	9890586	9894627	+	0	NA	Intergenic	Intergenic	-3066	NR_040511	77682	Mm.488621	NR_040511	ENSMUSG00000079602	9230102O04Rik	-	RIKEN cDNA 9230102O04 gene	ncRNA	5.038	1.042	0.541	2.294	1.923	0.811	6.081	7.702	3.152	3.719	0.864	1.013	5.154	5.313	6.544	7.084	6.267	4.973	0.833	0.466	0.205	0.621	0.387	0.237	5.292
2073	chr11	32518987	32520075	+	0	NA	TTS (NM_173784)	TTS (NM_173784)	8043	NM_027031	69306	Mm.288704	NM_027031	ENSMUSG00000044056	Efcab9	1700007I06Rik|4930403C08Rik	EF-hand calcium binding domain 9	protein-coding	3.273	6.172	2.441	3.915	4.864	4.994	4.875	3.028	3.204	4.062	1.720	0.693	3.769	4.725	4.409	4.341	3.344	3.704	2.693	2.903	4.150	5.496	1.643	1.554	4.281
2406	chr11	70460794	70472841	+	0	NA	TTS (NM_001029929)	TTS (NM_001029929)	-6833	NM_023158	66102	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	7.838	14.551	4.989	7.565	3.365	1.935	6.762	6.772	4.555	7.893	5.271	3.192	5.843	8.215	8.158	8.066	5.239	6.567	4.176	2.789	2.465	4.717	nan	2.669	10.628
76	chr1	34062767	34064931	+	0	NA	intron (NM_133833, intron 1 of 92)	MLT1F|LTR|ERVL-MaLR	52024	NM_134448	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	3.449	2.404	0.997	2.754	1.211	1.148	1.377	0.792	1.394	1.533	1.012	1.429	1.308	1.374	1.506	1.827	1.327	2.067	8.350	6.166	3.120	8.177	9.049	7.553	2.253
11223	chr5	52538096	52539098	+	0	NA	exon (NM_144945, exon 7 of 7)	exon (NM_144945, exon 7 of 7)	27709	NM_001310604	246316	Mm.44721	NM_144945	ENSMUSG00000039252	Lgi2	mKIAA1916	leucine-rich repeat LGI family, member 2	protein-coding	3.240	0.791	0.165	1.802	1.794	0.634	0.811	2.344	2.817	2.286	0.824	0.513	1.153	3.000	2.026	2.256	2.073	3.152	1.469	0.939	0.208	1.199	0.826	0.414	0.966
10285	chr4	95149319	95155691	+	0	NA	Intergenic	Intergenic	-100283	NM_010591	16476	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	3.441	nan	0.709	2.752	1.456	0.615	4.042	4.671	nan	nan	2.216	0.961	4.311	3.267	nan	6.226	3.530	2.991	1.443	1.009	0.951	nan	1.857	1.376	4.036
7621	chr19	20675734	20677911	+	0	NA	Intergenic	Intergenic	50734	NM_011921	26358	Mm.14609	NM_011921	ENSMUSG00000024747	Aldh1a7	AI987940|Ahd2-like|Aldh-pb|Aldh1a4|Aldhpb	aldehyde dehydrogenase family 1, subfamily A7	protein-coding	4.627	1.221	1.020	3.827	1.857	0.998	3.539	6.622	3.641	2.405	1.103	3.066	2.340	4.229	3.978	4.913	5.051	nan	2.203	1.445	1.114	2.513	2.627	2.329	2.713
14750	chr8	125864686	125867946	+	0	NA	intron (NM_175561, intron 8 of 33)	intron (NM_175561, intron 8 of 33)	32001	NM_175561	270109	Mm.145535	NM_175561	ENSMUSG00000060212	Pcnx2	A830048P05|AU067631|E330039K12Rik|Pcnxl2|mKIAA0435	pecanex homolog 2	protein-coding	3.541	nan	0.708	3.141	4.169	3.568	3.434	11.346	3.603	2.137	3.154	4.422	7.410	5.019	nan	5.721	3.711	4.930	4.744	2.628	3.128	6.669	3.754	nan	4.912
13601	chr7	118163494	118164557	+	0	NA	intron (NM_001031814, intron 38 of 62)	L1MB4|LINE|L1	-34400	NM_019419	54208	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	1.456	0.933	0.960	1.768	1.921	1.664	2.448	2.396	1.886	1.318	0.803	1.249	1.344	3.235	1.517	1.125	1.909	1.804	0.684	0.378	1.225	1.108	0.954	0.623	1.206
982	chr1	184446703	184448345	+	0	NA	Intergenic	Intergenic	110167	NR_040472	73590	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	10.984	9.492	2.852	13.048	5.088	2.744	5.455	7.585	5.838	11.808	6.557	4.004	8.334	7.973	8.703	13.210	6.181	11.712	4.751	2.566	3.608	5.077	4.521	4.970	15.391
8752	chr2	146039129	146055618	+	0	NA	Intergenic	Intergenic	112589	NM_175280	78774	Mm.136347	NM_175280	ENSMUSG00000037143	Cfap61	4930529M08Rik|BB178539|BC024760	cilia and flagella associated protein 61	protein-coding	0.300	1.065	0.536	0.372	0.171	0.105	0.221	0.391	0.215	0.329	0.159	0.126	0.154	0.233	0.288	0.478	0.391	0.287	nan	3.867	3.261	7.979	6.113	5.596	0.467
9957	chr4	19773821	19777923	+	0	NA	Intergenic	L1Md_T|LINE|L1	-42855	NM_028746	74087	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	2.964	0.865	0.524	2.542	5.586	2.886	1.499	2.448	2.936	2.954	2.099	1.109	2.408	4.839	2.743	2.486	1.844	3.206	0.718	0.611	0.468	0.402	0.464	0.500	2.201
2592	chr11	87236968	87241279	+	0	NA	intron (NM_177167, intron 4 of 6)	intron (NM_177167, intron 4 of 6)	112048	NM_197987	68729	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	3.866	4.529	4.256	3.928	6.634	5.537	3.325	4.123	3.358	3.261	2.426	2.584	3.106	5.739	2.920	3.571	4.899	3.419	2.684	3.516	3.374	nan	3.845	3.852	nan
11213	chr5	44337507	44341931	+	0	NA	Intergenic	Intergenic	-113113	NM_173764	231225	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	4.546	4.573	3.155	3.211	2.850	1.741	5.981	6.214	4.268	4.465	5.708	5.428	3.560	7.081	5.549	5.251	nan	4.912	3.446	2.073	1.358	2.274	2.619	1.937	3.231
7646	chr19	24050814	24054539	+	0	NA	Intergenic	ORR1A4|LTR|ERVL-MaLR	-21657	NM_001114174	381217	Mm.426078	NM_001114174	ENSMUSG00000071604	Fam189a2	AI414343|AI666772|Gm967	family with sequence similarity 189, member A2	protein-coding	nan	0.568	0.460	1.318	0.413	0.215	0.990	nan	1.262	1.044	nan	0.298	0.931	2.132	1.040	1.564	1.226	1.648	nan	1.572	0.741	4.507	nan	0.610	1.844
9131	chr3	7629858	7632084	+	0	NA	Intergenic	Intergenic	-17211	NM_001313888	16196	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	4.089	0.502	0.191	2.522	1.371	1.131	4.671	4.253	3.504	3.073	0.416	0.606	5.625	4.395	4.016	4.455	5.153	3.729	0.649	0.661	0.220	0.429	0.193	0.310	2.325
11898	chr5	141083341	141088326	+	0	NA	Intergenic	Intergenic	-85237	NM_175362	108723	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	7.204	9.686	1.972	9.059	1.968	0.965	5.632	4.633	3.790	7.618	5.918	3.266	4.134	5.677	6.008	7.635	2.390	7.855	9.204	3.911	4.168	10.076	5.489	4.720	9.587
15485	chr9	107507176	107512816	+	0	NA	intron (NM_001174047, intron 6 of 38)	intron (NM_001174047, intron 6 of 38)	-23949	NM_019704	56395	Mm.260153	NM_019704	ENSMUSG00000010045	Tmem115	C78915|Pl6|Pp6	transmembrane protein 115	protein-coding	2.546	1.929	0.561	5.825	2.341	1.176	3.085	5.569	nan	3.168	1.152	1.314	2.537	4.324	4.200	6.047	1.682	4.773	1.361	0.910	0.869	2.577	0.901	0.738	4.940
10743	chr4	137240971	137244913	+	0	NA	Intergenic	Intergenic	-34693	NM_009523	22417	Mm.20355	NM_009523	ENSMUSG00000036856	Wnt4	Wnt-4	wingless-type MMTV integration site family, member 4	protein-coding	nan	0.305	0.131	3.209	1.595	0.934	5.099	2.564	nan	2.273	0.317	0.403	3.064	7.271	3.497	3.453	1.929	nan	3.286	2.709	2.120	5.481	nan	1.533	8.633
8151	chr2	32985183	32987405	+	0	NA	TTS (NM_178888)	TTS (NM_178888)	-4238	NM_019488	56017	Mm.305754	NM_019488	ENSMUSG00000026791	Slc2a8	D2Ertd44e|GLUT8|GlutX1	solute carrier family 2, (facilitated glucose transporter), member 8	protein-coding	5.727	4.041	2.058	5.600	4.631	2.917	4.162	5.129	2.669	6.454	3.007	1.951	4.208	8.668	4.254	7.156	6.665	4.528	1.633	2.151	1.257	2.993	3.546	2.693	10.889
1345	chr10	61116779	61118000	+	0	NA	intron (NM_009163, intron 4 of 14)	MER20|DNA|hAT-Charlie	28058	NM_025273	13180	Mm.39473	NM_025273	ENSMUSG00000020098	Pcbd1	Dcoh|Pcbd|Pcd|Phs	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	protein-coding	3.291	0.845	0.638	1.876	3.621	2.029	2.548	5.496	2.260	2.222	1.605	2.129	2.583	4.118	3.096	4.164	2.272	2.686	nan	0.894	0.090	0.577	0.508	0.110	3.305
2290	chr11	61306811	61309059	+	0	NA	intron (NM_001033542, intron 13 of 16)	MTD|LTR|ERVL-MaLR	34925	NM_001033542	380701	Mm.340166	NM_001033542	ENSMUSG00000069855	Slc47a2	4933429E10Rik	solute carrier family 47, member 2	protein-coding	6.923	8.438	2.747	7.227	3.508	2.147	4.834	4.708	3.105	5.751	3.758	3.082	4.726	nan	6.686	7.514	3.678	6.076	nan	1.634	2.637	4.913	2.678	3.285	9.809
4431	chr13	114273432	114276646	+	0	NA	Intergenic	Intergenic	113055	NM_010887	17993	Mm.253142	NM_010887	ENSMUSG00000021764	Ndufs4	6720411N02Rik|C1-18k	NADH dehydrogenase (ubiquinone) Fe-S protein 4	protein-coding	3.504	0.956	0.532	2.867	4.527	1.945	1.762	2.219	1.933	1.670	1.408	0.913	2.084	5.310	2.322	2.257	1.093	3.682	0.497	0.589	0.267	0.461	0.321	0.198	2.341
9276	chr3	51219535	51221597	+	0	NA	Intergenic	B1_Mur1|SINE|Alu	-3881	NM_009834	12457	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	10.599	15.656	6.286	9.596	8.505	7.072	10.453	7.972	4.429	10.924	8.700	6.032	8.026	9.634	8.672	9.493	7.559	8.423	5.259	3.619	6.315	5.697	4.342	8.191	14.847
10601	chr4	131594044	131598395	+	0	NA	Intergenic	Intergenic	242059	NM_011214	19273	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding	4.398	5.924	3.198	6.074	4.088	2.214	1.977	1.801	2.766	2.737	1.593	1.421	0.934	2.105	nan	2.310	1.588	3.986	2.032	3.070	2.044	2.258	2.154	1.654	1.993
1123	chr10	18579784	18583968	+	0	NA	Intergenic	Intergenic	-35800	NM_019487	56016	Mm.35551	NM_019487	ENSMUSG00000019853	Hebp2	SOUL	heme binding protein 2	protein-coding	0.619	0.582	0.553	0.408	0.547	0.380	0.467	0.700	nan	0.528	5.358	1.160	0.425	nan	0.341	0.630	0.824	0.807	0.479	0.875	0.368	0.595	0.535	0.375	nan
758	chr1	155587059	155589148	+	0	NA	TTS (NM_001145781)	TTS (NM_001145781)	29983	NM_026683	72482	Mm.288249	NM_026683	ENSMUSG00000033701	Acbd6	0610010G04Rik|2610100E10Rik	acyl-Coenzyme A binding domain containing 6	protein-coding	5.704	3.297	1.104	2.325	1.953	0.703	1.212	1.392	nan	0.912	0.461	0.288	1.340	1.680	2.584	nan	1.886	3.065	5.993	1.687	1.520	5.792	nan	3.638	6.464
6351	chr17	14026677	14028717	+	0	NA	Intergenic	L1_Mus2|LINE|L1	79324	NM_001122977	635895	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	3.502	0.416	0.572	2.359	2.706	1.987	4.327	2.269	5.277	3.911	6.278	3.132	4.987	3.579	3.453	4.426	5.141	4.044	1.164	1.042	0.625	0.663	0.750	0.744	nan
5902	chr16	22407559	22414662	+	0	NA	intron (NM_023794, intron 7 of 12)	intron (NM_023794, intron 7 of 12)	28460	NM_023794	104156	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	2.936	0.769	0.433	1.417	2.805	1.554	2.725	3.231	1.846	nan	0.426	0.463	3.282	2.595	2.118	4.118	2.943	2.771	0.570	0.649	0.449	0.686	0.537	0.452	2.995
15215	chr9	65842210	65843495	+	0	NA	intron (NM_019797, intron 14 of 15)	B1_Mur2|SINE|Alu	-15288	NM_172536	214812	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	2.803	0.614	0.158	0.585	1.021	0.408	0.742	0.589	2.172	1.676	0.392	0.231	2.672	3.863	nan	1.771	1.557	1.513	nan	0.860	0.925	0.580	0.427	0.223	2.220
14	chr1	9618295	9622482	+	0	NA	intron (NM_178399, intron 4 of 5)	MLT1A|LTR|ERVL-MaLR	10704	NR_015470	72481	Mm.279818	NR_015470	ENSMUSG00000079671	2610203C22Rik	2310007M24Rik	RIKEN cDNA 2610203C22 gene	ncRNA	4.964	1.545	0.718	3.854	1.581	0.979	1.817	2.824	2.371	2.522	4.667	3.351	1.402	1.827	2.456	7.021	2.798	3.513	5.443	2.985	1.358	5.949	5.226	2.569	5.526
4761	chr14	65057222	65060767	+	0	NA	exon (NM_018788, exon 5 of 7)	exon (NM_018788, exon 5 of 7)	39112	NM_018788	54616	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	9.497	9.598	2.321	9.086	3.018	1.580	6.138	10.371	6.129	9.389	5.443	3.764	8.072	10.083	9.828	10.285	5.264	10.874	5.807	nan	1.724	6.891	2.565	1.631	12.054
15455	chr9	105700622	105702862	+	0	NA	intron (NM_001102607, intron 34 of 36)	intron (NM_001102607, intron 34 of 36)	58747	NM_001081309	75669	Mm.274830	NM_029380	ENSMUSG00000032571	Pik3r4	2210010O15Rik|C730038E05Rik|C85833|D9Ertd418e	phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 4, p150	protein-coding	3.022	0.586	0.361	0.778	0.151	0.112	1.835	0.495	nan	nan	0.275	0.175	1.858	2.908	1.834	nan	1.691	3.111	0.437	0.477	0.180	0.413	0.308	0.170	4.247
2587	chr11	86764165	86766861	+	0	NA	intron (NR_106195, intron 2 of 8)	intron (NR_106195, intron 2 of 8)	-8021	NM_001003908	67300	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	3.263	1.485	0.422	3.759	1.386	0.373	1.369	2.096	2.830	2.262	1.178	1.282	1.440	1.876	2.961	3.149	1.656	3.618	0.955	0.997	0.411	2.758	0.521	0.169	3.038
14671	chr8	122301230	122303705	+	0	NA	intron (NM_009569, intron 1 of 9)	intron (NM_009569, intron 1 of 9)	20326	NM_009569	22761	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	7.652	6.668	2.641	6.521	4.183	1.511	4.500	8.265	3.299	5.159	4.692	2.413	4.568	8.131	5.998	8.055	6.077	5.524	3.000	2.958	2.126	5.160	3.064	2.332	10.344
10898	chr4	149069604	149077302	+	0	NA	intron (NM_019781, intron 2 of 8)	intron (NM_019781, intron 2 of 8)	26359	NM_019781	56273	Mm.184172	NM_019781	ENSMUSG00000028975	Pex14	Pex14p|R75137	peroxisomal biogenesis factor 14	protein-coding	3.258	13.767	5.295	3.440	1.856	1.127	1.691	1.072	1.199	1.927	1.247	0.581	1.163	2.216	2.304	1.657	1.287	1.715	1.429	1.921	1.727	1.689	2.151	1.657	2.860
9010	chr2	166759291	166761151	+	0	NA	Intergenic	RMER4B|LTR|ERVK	-33546	NM_023815	76367	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	4.644	1.311	0.514	2.887	2.063	1.046	3.689	3.662	3.270	5.096	1.144	0.778	6.198	5.664	4.923	6.589	4.441	4.627	2.986	0.415	0.938	2.654	2.005	1.597	6.224
9556	chr3	96034352	96037402	+	0	NA	intron (NM_013841, intron 10 of 14)	intron (NM_013841, intron 10 of 14)	22578	NM_013841	22365	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	2.872	1.696	0.938	2.167	2.049	0.792	8.255	3.542	2.814	2.565	nan	0.748	3.738	3.709	5.311	4.047	3.839	4.009	0.972	0.803	0.463	1.233	0.506	0.381	5.828
2328	chr11	64248276	64249428	+	0	NA	Intergenic	Intergenic	169368	NR_033780	66456	Mm.124828	NR_033780	ENSMUSG00000087497	2810001G20Rik	AW045514	RIKEN cDNA 2810001G20 gene	ncRNA	3.669	3.360	1.262	5.716	1.927	1.197	2.092	4.719	2.110	3.654	6.347	0.727	1.876	3.536	4.642	4.061	2.900	7.403	1.603	0.633	0.792	1.702	nan	1.944	6.758
5630	chr15	98929387	98930654	+	0	NA	Intergenic	ID_B1|SINE|B4	4370	NM_011654	22143	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	5.508	0.787	0.467	0.862	1.263	0.741	8.265	11.960	2.056	1.604	0.750	3.409	9.975	6.448	5.095	nan	7.105	2.989	1.076	1.029	1.133	3.482	1.990	1.861	3.809
2889	chr11	106053125	106057943	+	0	NA	3' UTR (NM_027946, exon 7 of 7)	3' UTR (NM_027946, exon 7 of 7)	-10573	NM_027346	70207	Mm.343857	NM_027346	ENSMUSG00000001983	Taco1	2310066I18Rik|Ccdc44	translational activator of mitochondrially encoded cytochrome c oxidase I	protein-coding	4.705	6.471	2.785	5.535	3.575	2.541	4.807	4.287	nan	4.762	3.444	2.543	5.175	7.329	5.950	6.817	4.556	nan	3.155	2.119	1.599	nan	2.062	1.549	5.782
3786	chr12	114477202	114500156	+	0	NA	Intergenic	Intergenic	-19213	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	nan	12.342	6.367	1.009	0.461	0.221	0.190	0.244	0.276	0.392	0.237	0.153	0.134	0.200	0.376	nan	0.560	0.329	0.382	1.248	0.598	0.203	0.266	0.214	nan
234	chr1	60967482	60970739	+	0	NA	Intergenic	Intergenic	-8804	NM_017480	54167	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	1.514	6.604	2.768	1.551	0.638	0.290	0.435	0.489	0.925	0.958	0.428	0.742	0.317	0.497	0.928	nan	0.804	1.005	0.624	0.758	0.339	0.662	0.440	0.434	0.607
7867	chr19	53384342	53389790	+	0	NA	intron (NM_172429, intron 2 of 5)	intron (NM_172429, intron 2 of 5)	3507	NM_172429	76479	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	2410004J23Rik|4933440I19Rik	survival motor neuron domain containing 1	protein-coding	8.364	5.396	2.405	7.120	5.523	3.710	2.949	14.955	4.524	12.096	6.606	5.809	4.377	9.191	nan	6.773	5.616	5.290	3.001	3.993	3.595	5.253	5.004	5.097	15.857
594	chr1	132976654	132988357	+	0	NA	Intergenic	Intergenic	42911	NR_126506	17248	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	6.499	nan	1.475	5.501	4.055	2.018	2.696	4.142	4.676	5.411	1.902	1.372	4.720	7.342	5.582	9.033	5.791	7.136	nan	1.719	0.942	2.764	1.221	0.773	7.177
10789	chr4	138783162	138792514	+	0	NA	Intergenic	MIR3|SINE|MIR	12103	NM_011109	18782	Mm.71913	NM_011109	ENSMUSG00000041202	Pla2g2d	Splash|mGIID	phospholipase A2, group IID	protein-coding	4.286	2.404	0.765	4.600	3.832	1.784	3.028	3.425	3.910	4.636	4.970	3.166	3.190	5.103	4.600	4.749	1.771	4.741	1.287	0.704	0.669	2.029	nan	0.376	4.382
2924	chr11	107317145	107319304	+	0	NA	intron (NM_145823, intron 4 of 9)	intron (NM_145823, intron 4 of 9)	-128843	NM_001161329	68979	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	2.825	6.038	8.136	2.234	2.956	2.074	1.226	3.141	nan	nan	4.115	5.407	1.216	1.899	1.075	1.155	1.514	nan	1.704	3.670	3.209	nan	2.521	1.895	0.847
6746	chr17	56381203	56384972	+	0	NA	intron (NM_172132, intron 8 of 22)	intron (NM_172132, intron 8 of 22)	35822	NR_105943	102465590		NR_105943	ENSMUSG00000098339	Mir6977	Gm27922|mmu-mir-6977	microRNA 6977	ncRNA	nan	nan	0.484	0.648	0.405	0.355	1.625	1.429	0.562	0.710	0.288	0.381	0.562	1.748	1.221	0.941	1.381	0.661	4.756	2.327	2.380	2.866	6.599	5.647	1.096
14173	chr8	38056322	38057675	+	0	NA	intron (NM_145841, intron 1 of 7)	intron (NM_145841, intron 1 of 7)	195204	NR_029884	723860		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA	8.072	3.916	0.731	6.722	2.686	1.133	3.856	11.131	4.864	5.746	3.535	2.128	7.363	6.278	10.791	13.325	6.406	8.571	1.609	1.170	0.617	4.151	1.364	0.180	11.858
4580	chr14	31831470	31833067	+	0	NA	Intergenic	Intergenic	-1853	NM_001024604	105522	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	10.831	12.940	5.304	9.405	10.402	8.854	10.171	12.375	6.913	14.137	7.574	5.760	7.590	11.662	9.639	10.336	8.793	8.253	7.235	5.026	8.172	5.686	5.905	11.226	13.942
10011	chr4	42962778	42967092	+	0	NA	Intergenic	Intergenic	-5011	NM_026088	67317	Mm.478018	NM_026088	ENSMUSG00000028451	1700022I11Rik	-	RIKEN cDNA 1700022I11 gene	protein-coding	nan	3.624	1.197	2.936	1.792	1.096	1.660	1.675	1.134	2.632	0.900	0.761	0.864	1.988	1.773	2.445	1.123	nan	5.869	2.430	1.878	4.527	2.081	1.445	3.928
12040	chr6	7805786	7809361	+	0	NA	Intergenic	Intergenic	-37651	NM_052993	94192	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	5.060	1.264	1.031	3.284	3.077	1.465	5.255	6.328	4.089	5.283	3.798	3.585	5.403	8.636	5.027	8.127	7.049	5.577	1.519	0.845	0.464	0.998	0.988	0.634	nan
5213	chr15	58900459	58916649	+	0	NA	intron (NM_175151, intron 9 of 11)	B2_Mm2|SINE|B2	19325	NM_175226	75841	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	7.345	7.154	3.214	nan	2.654	1.478	9.982	10.427	nan	6.159	2.341	2.034	11.059	7.280	8.112	nan	7.599	6.723	3.763	1.636	1.491	2.977	2.000	1.521	9.107
4302	chr13	96612545	96615643	+	0	NA	intron (NM_023420, intron 8 of 17)	intron (NM_023420, intron 8 of 17)	56842	NM_008255	15357	Mm.316652	NM_008255	ENSMUSG00000021670	Hmgcr	HMG-CoAR|Red	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	protein-coding	2.753	0.896	0.660	0.759	0.940	0.428	4.018	3.400	2.734	2.304	3.617	2.386	3.921	5.543	2.273	4.452	2.570	nan	0.581	0.813	0.353	0.419	0.424	0.598	1.180
10273	chr4	94651945	94655410	+	0	NA	intron (NM_026319, intron 9 of 19)	B2_Mm1a|SINE|B2	-3533	NM_175305	100061	Mm.26760	NM_175305	ENSMUSG00000049799	Lrrc19	9130022A01Rik|AI314124|AL022954|AW261791	leucine rich repeat containing 19	protein-coding	2.352	nan	0.414	1.630	1.695	0.647	1.825	1.526	nan	nan	0.532	0.380	4.393	5.312	nan	4.847	2.587	2.393	0.682	0.463	0.312	nan	0.672	0.408	3.322
3554	chr12	85542030	85545404	+	0	NA	Intergenic	Intergenic	-55388	NM_001205052	81703	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	5.085	12.709	5.288	4.711	3.572	2.220	3.021	7.215	2.885	4.928	6.016	3.221	3.560	7.472	4.680	5.368	3.799	5.264	4.161	2.036	1.499	2.894	1.870	1.175	6.655
11473	chr5	99264381	99265312	+	0	NA	Intergenic	Intergenic	-11919	NM_145839	320292	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.907	0.294	0.424	1.674	1.644	0.130	0.934	2.672	1.014	0.944	1.426	1.008	1.534	3.319	1.520	1.504	1.131	1.350	0.519	0.705	0.307	0.249	0.521	0.432	1.227
6158	chr16	76957753	76959673	+	0	NA	Intergenic	Intergenic	52168	NR_040573	76601	Mm.396217	NR_040573	ENSMUSG00000100857	1700041M19Rik	-	RIKEN cDNA 1700041M19 gene	ncRNA	4.461	0.472	0.206	1.796	2.888	2.043	3.929	6.875	3.609	3.233	5.818	4.040	4.693	5.838	5.025	6.029	4.912	5.208	nan	1.240	0.702	1.391	1.653	1.087	3.352
10127	chr4	59265159	59267402	+	0	NA	intron (NR_105031, intron 3 of 3)	RMER19A|LTR|ERVK	6229	NR_105031	101055769	Mm.421401	NR_105031		Gm12596	OTTMUSG00000007649	predicted gene 12596	ncRNA	5.473	5.083	2.536	3.981	2.517	2.221	nan	5.227	3.896	3.889	1.674	1.670	4.252	3.965	4.890	5.526	3.212	4.820	nan	1.460	1.222	1.174	0.860	0.626	8.010
9982	chr4	40089030	40096503	+	0	NA	Intergenic	Lx8|LINE|L1	-50499	NM_007386	11428	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	6.695	3.054	0.899	4.923	3.725	2.207	6.844	5.674	5.004	6.226	2.926	1.999	7.439	8.122	6.495	7.216	4.441	nan	2.500	0.924	1.153	1.865	1.144	1.225	8.548
11973	chr5	149409120	149411037	+	0	NA	Intergenic	MT2A|LTR|ERVL	-1728	NM_027519	70717	Mm.252139	NM_027519	ENSMUSG00000029659	Medag	6330406I15Rik|Awms3|MEDA-4|Meda4|mAWMS3	mesenteric estrogen dependent adipogenesis	protein-coding	3.485	5.192	2.420	2.201	1.923	0.908	4.537	5.181	3.657	2.515	3.152	1.361	4.859	5.167	5.444	3.806	3.909	4.240	1.275	1.027	0.988	1.199	2.027	1.457	2.869
6936	chr17	86903981	86908251	+	0	NA	Intergenic	Intergenic	-11232	NM_001277980	78469	Mm.67234	NM_030104	ENSMUSG00000037689	Tmem247	1700090G07Rik	transmembrane protein 247	protein-coding	2.871	5.227	2.227	6.058	3.212	1.250	1.056	1.123	nan	3.148	1.113	0.871	1.299	1.974	1.585	2.619	1.215	3.535	0.760	0.833	0.791	0.843	0.513	0.359	2.071
6551	chr17	33891668	33898461	+	0	NA	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-4431	NM_001195298	100502766	Mm.335713	NM_001195298	ENSMUSG00000079553	Kifc1	100042970|Gm4137|HSET|KNSL2|Kifc5a|Knsl2a|Tctex-7|Tctex-7A|Tctex7|Tctex7a	kinesin family member C1	protein-coding	nan	3.948	1.818	5.542	4.234	2.739	5.469	7.236	4.797	5.623	3.291	1.979	5.498	7.507	6.285	7.294	4.819	6.464	2.161	1.789	1.859	2.132	1.938	1.874	8.563
12978	chr7	20162413	20167420	+	0	NA	Intergenic	Lx6|LINE|L1	3461	NM_001166723	620537	Mm.480273	NM_001166723	ENSMUSG00000094011	Vmn1r94	EG620537|Gm6160	vomeronasal 1 receptor 94	protein-coding	2.509	6.780	2.269	4.280	2.044	1.528	3.763	6.084	2.315	3.537	6.436	2.537	4.903	5.507	5.083	4.257	4.223	4.839	1.056	1.148	1.376	2.579	0.791	0.821	6.196
9191	chr3	27608457	27610186	+	0	NA	intron (NM_173182, intron 3 of 25)	intron (NM_173182, intron 3 of 25)	-24326	NR_037275	100526525		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	11.125	4.940	1.166	15.113	7.329	5.893	16.291	11.245	6.868	24.470	10.309	5.773	12.628	14.278	11.744	13.444	9.916	13.680	8.704	3.216	5.313	8.261	5.262	10.385	26.473
6107	chr16	48354994	48357548	+	0	NA	Intergenic	Intergenic	45997	NM_028615	73703	Mm.27857	NM_028615	ENSMUSG00000072419	Dppa2	2410088E07Rik|C80932|D19Mgi18|ECAT15-2	developmental pluripotency associated 2	protein-coding	6.355	0.375	0.357	1.979	5.836	3.007	3.976	4.941	3.545	3.622	0.391	1.202	5.670	6.305	3.767	4.464	3.832	4.226	0.606	0.736	0.510	0.266	0.568	0.223	3.769
3116	chr11	120432236	120435885	+	0	NA	intron (NM_199469, intron 1 of 15)	B3|SINE|B2	3640	NM_001195023	217365	Mm.309520	NM_199469	ENSMUSG00000039703	Nploc4	AK129375|Npl4|mKIAA1499	NPL4 homolog, ubiquitin recognition factor	protein-coding	7.315	10.335	2.859	7.788	4.146	2.650	5.622	nan	4.597	7.687	5.322	3.828	6.571	7.592	8.787	10.270	4.738	8.262	4.205	nan	1.810	6.039	1.982	2.012	10.063
10571	chr4	129416929	129420661	+	0	NA	Intergenic	B3|SINE|B2	22023	NM_153541	215627	Mm.428660	NM_153541	ENSMUSG00000048485	Zbtb8b	AV220464|BC023839|BOZF1|Zbtb8	zinc finger and BTB domain containing 8b	protein-coding	6.614	10.769	5.192	6.607	5.709	3.677	6.573	4.942	3.093	7.717	6.176	2.288	4.266	6.484	nan	6.476	4.365	5.020	7.966	7.462	7.784	8.339	8.532	8.468	10.927
1000	chr1	186690484	186696699	+	0	NA	intron (NM_001329107, intron 1 of 7)	intron (NM_001329107, intron 1 of 7)	12398	NM_009367	21808	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	3.752	1.035	0.537	2.653	1.027	0.575	2.299	4.926	2.793	2.603	1.644	0.981	3.412	4.973	4.184	nan	3.837	3.637	0.605	0.670	0.452	0.615	0.681	0.325	6.303
11222	chr5	52258247	52260272	+	0	NA	Intergenic	Intergenic	-42826	NR_040717	414111	Mm.417638	NR_040717	ENSMUSG00000106464	C130083M11Rik	-	RIKEN cDNA C130083M11 gene	ncRNA	2.218	0.390	0.307	3.243	1.737	0.533	1.956	3.463	4.406	4.857	0.922	0.890	2.583	4.079	4.560	5.546	4.196	4.220	0.765	0.631	0.327	1.261	0.440	0.591	2.236
9818	chr3	133901413	133904367	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-333605	NM_001004367	319478	Mm.224814	NM_001004367	ENSMUSG00000044365	Cxxc4	9330210J02Rik|C030003J12Rik|Idax	CXXC finger 4	protein-coding	0.394	nan	1.517	1.337	0.414	0.209	nan	3.529	0.343	0.509	0.776	0.262	0.377	1.595	1.396	0.430	0.577	0.667	5.889	3.040	2.069	3.055	7.817	7.183	0.630
43	chr1	20824741	20827802	+	0	NA	Intergenic	Intergenic	-6058	NM_008563	17215	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|p1.m	minichromosome maintenance complex component 3	protein-coding	12.324	0.470	0.196	3.466	7.176	4.257	7.114	4.370	5.117	7.405	2.042	1.476	8.886	10.885	6.363	11.638	9.671	6.854	0.638	0.842	0.734	0.454	0.679	0.492	8.433
8410	chr2	84534987	84535814	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-28527	NR_046046	672763	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	OTTMUSG00000013441	predicted gene 13710	ncRNA	2.533	0.519	0.356	0.972	1.162	0.102	0.891	1.170	1.221	1.263	1.460	0.612	1.410	3.152	1.787	1.877	2.572	1.684	1.095	0.601	0.466	0.623	0.301	0.637	2.806
6012	chr16	32802884	32810531	+	0	NA	exon (NM_001256309, exon 2 of 4)	exon (NM_001256309, exon 2 of 4)	3739	NM_001256309	381043	Mm.303864	NM_001256309	ENSMUSG00000094430	Gm933	Gm1743	predicted gene 933	protein-coding	7.833	1.030	0.621	3.270	2.873	1.798	7.449	8.751	3.330	4.802	1.554	0.980	8.826	9.367	7.719	10.006	8.048	5.873	3.666	1.309	1.088	1.497	nan	2.373	8.375
2582	chr11	86640273	86642913	+	0	NA	intron (NM_029478, intron 6 of 11)	B1_Mus1|SINE|Alu	-14478	NR_106195	102465902		NR_106195	ENSMUSG00000099324	Mir8115	Gm28012|mmu-mir-8115	microRNA 8115	ncRNA	9.369	2.143	1.397	3.321	5.273	3.890	9.596	3.724	4.124	4.987	3.993	2.339	5.359	7.327	4.972	5.019	4.430	5.125	0.962	1.972	1.913	nan	1.067	1.314	6.004
6669	chr17	46219756	46221701	+	0	NA	intron (NM_028198, intron 11 of 31)	intron (NM_028198, intron 11 of 31)	-10803	NR_030466	751553		NR_030466	ENSMUSG00000076141	Mir693	Mirn693|mir-693|mmu-mir-693	microRNA 693	ncRNA	5.838	1.385	0.485	3.777	3.177	0.762	9.179	6.035	2.254	4.013	0.966	0.517	3.492	6.176	4.414	6.624	3.869	2.694	1.555	2.064	1.554	1.504	1.782	0.887	5.588
3502	chr12	81030029	81031471	+	0	NA	intron (NM_022316, intron 1 of 12)	intron (NM_022316, intron 1 of 12)	3942	NM_022316	64075	Mm.273295	NM_022316	ENSMUSG00000021136	Smoc1	2600002F22Rik|AI848508|SRG	SPARC related modular calcium binding 1	protein-coding	5.009	2.763	1.247	2.873	2.070	1.250	5.353	3.615	1.968	3.245	3.440	2.000	3.777	3.224	3.679	3.675	5.080	3.430	1.455	1.833	0.914	1.652	1.664	1.165	4.178
7887	chr19	55321770	55350256	+	0	NA	intron (NM_001293685, intron 3 of 8)	intron (NM_001293685, intron 3 of 8)	19956	NM_001293686	53611	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	5.323	nan	1.056	3.804	3.527	1.996	8.854	nan	5.593	5.124	3.754	2.873	6.857	8.216	nan	8.401	7.830	7.478	1.852	1.327	0.988	1.811	3.198	2.266	nan
12135	chr6	31567163	31570676	+	0	NA	Intergenic	B4|SINE|B4	-4982	NM_013723	27205	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1	podocalyxin-like	protein-coding	4.361	0.658	0.667	2.689	1.287	0.540	3.982	5.635	2.880	2.895	0.991	1.200	2.642	3.174	3.336	4.383	3.550	3.125	2.774	1.854	1.225	3.485	5.113	3.391	3.620
3955	chr13	34403606	34405846	+	0	NA	Intergenic	Intergenic	-59544	NM_001033167	73102	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	3.311	nan	0.778	1.606	3.166	1.755	nan	2.902	2.631	2.679	2.281	1.325	2.495	4.169	2.632	2.749	1.718	3.846	1.585	1.498	1.368	2.318	1.179	1.488	2.550
5367	chr15	76707869	76713063	+	0	NA	promoter-TSS (NM_058214)	promoter-TSS (NM_058214)	93	NM_058214	79456	Mm.18373	NM_058214	ENSMUSG00000033762	Recql4	RecQ4	RecQ protein-like 4	protein-coding	6.646	nan	1.308	nan	4.357	3.610	11.630	12.051	3.636	3.962	nan	4.468	8.643	7.359	6.441	6.187	8.682	5.658	4.391	2.773	3.370	nan	4.606	3.924	7.324
193	chr1	55269470	55271231	+	0	NA	Intergenic	Intergenic	33173	NM_175439	212679	Mm.19223	NM_175439	ENSMUSG00000046994	Mars2	C730026E21Rik|MetRS	methionine-tRNA synthetase 2 (mitochondrial)	protein-coding	6.461	0.996	0.387	3.755	3.533	5.261	5.219	4.280	3.809	3.458	1.022	1.805	7.228	4.611	4.297	8.543	7.297	5.662	0.723	0.759	1.262	0.518	0.820	1.125	5.454
288	chr1	72974645	72980358	+	0	NA	Intergenic	Intergenic	38398	NM_009407	21958	Mm.425024	NM_009407	ENSMUSG00000026182	Tnp1	Stp-1|TP1|Tp-1	transition protein 1	protein-coding	1.869	0.680	0.365	1.144	0.495	0.256	1.716	1.631	1.699	1.831	0.295	0.295	3.026	nan	3.434	6.459	nan	nan	4.221	3.220	1.683	7.064	2.630	1.718	3.013
13711	chr7	129033731	129034600	+	0	NA	Intergenic	MERV1_LTR|LTR|ERV1	-222929	NM_001080963	381925	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	2.399	2.449	1.045	2.037	0.733	0.283	0.973	3.367	1.186	2.513	0.393	0.759	2.738	3.567	1.467	2.986	2.221	2.105	2.469	0.783	0.799	1.586	2.782	2.040	2.282
119	chr1	39243128	39244739	+	0	NA	intron (NM_008719, intron 1 of 20)	intron (NM_008719, intron 1 of 20)	49661	NM_008719	18143	Mm.2380	NM_008719	ENSMUSG00000026077	Npas2	MOP4|bHLHe9	neuronal PAS domain protein 2	protein-coding	11.338	0.888	0.547	1.824	4.668	2.530	6.165	5.645	2.265	4.355	3.613	1.622	5.682	5.687	4.017	8.298	6.675	5.515	1.089	0.995	0.906	1.263	0.762	0.867	5.625
12956	chr7	19532444	19535197	+	0	NA	intron (NM_199149, intron 8 of 12)	RSINE1|SINE|B4	15089	NM_027116	69547	Mm.77325	NM_027116	ENSMUSG00000060621	Nkpd1	2310015G09Rik	NTPase, KAP family P-loop domain containing 1	protein-coding	2.827	0.804	0.764	3.024	1.801	0.638	1.397	2.585	2.183	2.169	0.727	0.864	0.569	1.325	1.284	2.393	1.128	2.402	4.557	2.214	2.517	4.508	6.287	4.217	1.858
4875	chr14	77184387	77190208	+	0	NA	intron (NM_001253759, intron 1 of 19)	intron (NM_001253759, intron 1 of 19)	30534	NM_172813	239188	Mm.441158	NM_172813	ENSMUSG00000022012	Enox1	B230207J08|D230005D02Rik	ecto-NOX disulfide-thiol exchanger 1	protein-coding	2.052	0.791	0.189	1.746	2.551	1.577	4.266	4.715	3.820	3.429	3.720	2.360	4.476	3.973	6.418	5.743	1.575	4.184	1.567	0.311	0.567	1.068	0.771	0.724	3.598
10764	chr4	137918743	137923170	+	0	NA	intron (NM_199307, intron 3 of 19)	intron (NM_199307, intron 3 of 19)	58719	NM_199307	230857	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	nan	0.334	0.271	1.107	3.515	3.355	1.634	0.427	nan	0.267	2.267	0.701	0.301	2.511	0.691	0.328	0.313	nan	0.619	0.497	0.525	0.529	nan	0.790	0.996
10222	chr4	82333754	82338171	+	0	NA	intron (NM_001113210, intron 6 of 11)	RLTR17B_Mm|LTR|ERVK	169817	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.842	0.566	0.371	0.408	0.148	0.112	0.409	0.399	0.498	0.565	0.300	0.147	0.308	0.240	0.479	0.831	0.451	0.823	4.593	6.784	4.325	10.552	2.065	1.315	0.802
7859	chr19	47992477	47995481	+	0	NA	intron (NM_001163267, intron 15 of 17)	B4|SINE|B4	56267	NM_001163267	381229	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	7.476	14.956	4.797	9.372	4.375	2.075	4.685	6.341	5.188	6.422	6.516	2.471	4.184	8.239	7.483	7.817	3.412	8.296	2.092	1.406	1.008	4.886	1.365	0.796	11.042
5227	chr15	59464561	59467638	+	0	NA	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	91901	NM_001164604	68501	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	3.538	1.150	0.294	nan	1.262	0.738	6.160	6.740	nan	nan	1.172	0.835	5.409	4.161	6.349	nan	4.873	4.028	0.588	1.041	0.870	2.364	0.707	0.543	7.543
5954	chr16	25943954	25949967	+	0	NA	Intergenic	Intergenic	145044	NM_001127264	22061	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	3.440	0.563	0.231	1.649	1.237	0.688	4.029	5.634	2.470	2.143	4.618	1.708	3.632	4.474	4.146	5.686	3.329	3.652	1.120	0.839	0.674	1.797	nan	0.466	4.556
11303	chr5	66525611	66527478	+	0	NA	intron (NM_001310626, intron 2 of 15)	intron (NM_001310626, intron 2 of 15)	92273	NM_009686	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	3.541	1.118	0.952	2.091	3.495	1.727	2.273	4.352	1.793	3.775	1.266	1.615	2.145	5.298	4.135	3.849	3.350	3.316	1.011	1.867	1.016	1.348	0.873	0.914	2.388
15629	chr9	122495651	122505073	+	0	NA	Intergenic	Intergenic	-72139	NR_015610	319626	Mm.186748	NR_015610	ENSMUSG00000097736	9530059O14Rik	-	RIKEN cDNA 9530059O14 gene	ncRNA	0.377	0.536	0.344	0.248	0.152	0.067	0.207	0.322	0.227	0.365	1.068	0.383	0.171	0.196	0.212	0.487	0.243	0.408	5.391	3.432	2.365	5.872	nan	2.679	0.579
10213	chr4	82080146	82083676	+	0	NA	intron (NR_040659, intron 2 of 2)	intron (NR_040659, intron 2 of 2)	16531	NR_040659	545641	Mm.216028	NR_040659	ENSMUSG00000085022	Gm5860	EG545641	predicted gene 5860	ncRNA	5.267	1.170	0.620	5.048	2.689	1.284	3.000	3.178	3.087	2.874	3.417	2.671	2.566	3.679	2.949	2.451	1.339	4.318	nan	2.367	1.901	6.726	1.538	0.920	2.800
4730	chr14	60464812	60467296	+	0	NA	Intergenic	Intergenic	87768	NM_001164705	72125	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	1.640	nan	0.522	0.463	0.250	0.006	2.055	6.455	0.648	0.462	0.409	0.266	1.181	4.571	4.843	1.595	1.131	1.325	0.764	0.487	0.247	0.512	0.487	0.359	0.840
7946	chr2	5995166	5999263	+	0	NA	intron (NM_001081132, intron 8 of 21)	intron (NM_001081132, intron 8 of 21)	45745	NM_001081132	326622	Mm.31102	NM_001081132	ENSMUSG00000043241	Upf2	-	UPF2 regulator of nonsense transcripts homolog (yeast)	protein-coding	4.502	0.647	0.350	2.578	3.747	2.329	3.515	5.785	3.126	3.664	1.742	1.229	3.670	5.469	3.162	4.245	3.193	4.722	0.651	0.500	0.359	0.542	0.595	0.516	4.011
4438	chr13	117738182	117740945	+	0	NA	intron (NM_010408, intron 2 of 7)	intron (NM_010408, intron 2 of 7)	-19552	NR_045508	71100	Mm.414841	NR_045508	ENSMUSG00000079048	4933413L06Rik	-	RIKEN cDNA 4933413L06 gene	ncRNA	3.995	4.591	3.265	3.168	5.600	3.324	1.515	2.753	3.315	3.722	7.387	1.008	2.103	3.764	1.577	2.631	1.960	2.956	0.765	1.173	1.006	0.430	0.800	0.514	1.823
8515	chr2	109761404	109764195	+	0	NA	Intergenic	Intergenic	39878	NM_001285422	12064	Mm.1442	NM_007540	ENSMUSG00000048482	Bdnf	-	brain derived neurotrophic factor	protein-coding	0.745	0.572	0.542	0.547	0.514	0.088	0.288	0.760	1.233	1.156	4.559	2.233	0.418	0.817	0.645	0.872	1.196	1.227	0.992	0.749	0.713	nan	1.842	0.980	0.715
2118	chr11	45868386	45891153	+	0	NA	intron (NM_001346760, intron 1 of 11)	Lx|LINE|L1	27805	NM_001045520	216705	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	7.663	3.312	1.575	6.360	8.239	5.191	5.322	4.916	5.384	7.787	1.888	1.168	6.745	9.725	6.811	nan	6.114	nan	nan	2.003	2.022	nan	nan	0.691	7.011
14296	chr8	72929806	72933938	+	0	NA	intron (NM_001317391, intron 7 of 15)	L1_Mus3|LINE|L1	-84640	NR_039551	100628574		NR_039551	ENSMUSG00000093140	Mir28b	mmu-mir-28b	microRNA 28b	ncRNA	0.794	0.962	0.420	1.555	0.667	0.272	0.529	2.743	1.100	0.986	0.436	0.667	0.990	0.678	1.340	1.591	0.550	2.336	5.890	2.202	2.310	9.365	2.181	2.398	2.292
12965	chr7	19893610	19896114	+	0	NA	Intergenic	Intergenic	-6897	NM_177036	319930	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	3.900	7.014	1.609	8.457	2.962	1.377	4.567	5.995	2.654	4.077	2.543	2.367	4.810	5.931	7.991	9.269	3.507	6.047	2.131	1.378	0.964	5.158	1.492	1.081	8.560
415	chr1	90323646	90326901	+	0	NA	Intergenic	MER103C|DNA|hAT-Charlie	121293	NM_007722	12778	Mm.6522	NM_007722	ENSMUSG00000044337	Ackr3	AW541270|CXC-R7|CXCR-7|Cmkor1|Cxcr7|RDC-1|Rdc1	atypical chemokine receptor 3	protein-coding	4.588	0.664	0.398	2.799	3.088	1.955	4.527	2.664	4.770	5.068	5.309	3.312	6.132	5.478	3.185	7.958	2.892	7.067	0.758	0.410	0.312	nan	0.680	0.499	3.995
8904	chr2	158222759	158224116	+	0	NA	intron (NM_001131021, intron 1 of 15)	intron (NM_001131021, intron 1 of 15)	5787	NM_001131021	228846	Mm.187574	NM_177657	ENSMUSG00000037813	D630003M21Rik	-	RIKEN cDNA D630003M21 gene	protein-coding	2.592	0.571	0.946	2.503	3.581	2.746	5.353	2.741	2.493	4.465	0.584	1.601	6.384	7.217	3.998	5.174	1.522	nan	nan	5.664	5.490	0.825	5.927	6.983	1.475
14114	chr8	32216240	32219129	+	0	NA	Intergenic	Intergenic	65789	NR_046039	666589	Mm.367675	NR_046039		Gm8179	EG666589	predicted gene 8179	ncRNA	5.724	nan	1.281	2.890	4.941	3.402	4.495	5.961	2.655	3.084	2.970	1.635	5.411	6.230	5.869	6.653	4.361	4.571	1.168	1.414	1.208	2.224	1.111	0.669	7.308
12739	chr6	128498690	128500970	+	0	NA	intron (NM_007376, intron 16 of 35)	B2_Mm1t|SINE|B2	26890	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	3.982	nan	0.571	1.318	2.438	0.817	6.331	11.099	2.742	2.045	2.998	2.383	4.903	6.450	9.472	10.315	6.316	4.129	1.320	0.831	0.323	1.009	1.199	0.716	2.155
4196	chr13	60580596	60582402	+	0	NA	Intergenic	Intergenic	-20448	NM_001285917	69635	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	3.643	1.336	0.619	2.296	2.607	1.090	4.700	4.844	2.278	2.703	1.807	1.364	3.410	4.426	5.004	6.303	3.796	3.563	0.815	1.531	1.088	1.696	0.860	0.804	6.517
12732	chr6	128081574	128086907	+	0	NA	intron (NM_175414, intron 1 of 8)	L1MC4a|LINE|L1	59338	NM_175414	109246	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597	tetraspanin 9	protein-coding	5.991	nan	0.650	6.239	3.689	2.334	6.933	7.173	3.860	5.050	4.827	1.764	6.419	9.328	7.488	10.537	6.712	6.671	0.833	1.166	0.954	0.772	3.021	2.323	7.058
3987	chr13	37873578	37877527	+	0	NA	intron (NM_001039188, intron 1 of 9)	AT_rich|Low_complexity|Low_complexity	-12882	NR_033218	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	2.194	nan	0.427	1.060	1.157	0.617	nan	nan	nan	nan	6.398	4.412	2.871	3.500	2.761	nan	1.048	nan	0.938	0.625	0.873	1.479	0.622	0.534	nan
2597	chr11	87391281	87394064	+	0	NA	intron (NM_053269, intron 5 of 8)	B1_Mus1|SINE|Alu	11823	NM_053269	114714	Mm.37376	NM_053269	ENSMUSG00000007646	Rad51c	R51H3|Rad51l2	RAD51 paralog C	protein-coding	3.941	2.321	0.819	5.948	1.028	0.624	3.890	2.131	2.621	3.419	1.170	0.683	2.568	3.766	4.396	4.643	1.685	4.319	1.686	0.893	0.702	nan	1.294	1.516	5.442
1292	chr10	53348846	53350245	+	0	NA	intron (NM_001204983, intron 2 of 12)	intron (NM_001204983, intron 2 of 12)	11859	NM_001141927	18821	Mm.34145	NM_023129	ENSMUSG00000038583	Pln	Plb	phospholamban	protein-coding	4.465	10.594	2.914	6.233	1.900	1.533	3.183	3.993	2.821	8.479	4.669	2.014	3.385	5.409	5.369	6.819	3.616	5.539	nan	1.823	1.930	5.538	2.088	3.101	9.624
14311	chr8	73242487	73250075	+	0	NA	intron (NM_010687, intron 1 of 14)	RLTR6-int|LTR|ERV1	107259	NM_001317391	16795	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	6.023	nan	0.740	5.688	5.942	4.579	4.995	9.337	6.233	8.904	2.315	1.877	8.885	9.226	5.305	nan	7.322	5.499	0.600	1.084	1.282	nan	0.890	0.993	nan
11984	chr5	149887445	149891218	+	0	NA	Intergenic	RMER15|LTR|ERVL	41584	NR_045758	70969	Mm.78499	NR_045758	ENSMUSG00000107214	4930500F04Rik	4931407C17Rik	RIKEN cDNA 4930500F04 gene	ncRNA	3.552	1.051	0.848	nan	2.049	1.210	3.161	2.355	nan	2.572	2.561	1.504	3.207	3.646	3.592	nan	2.288	4.315	3.985	3.724	2.637	5.305	2.919	2.214	nan
8370	chr2	75444792	75453679	+	0	NA	Intergenic	Intergenic	-5056	NR_040635	77269	Mm.389278	NR_040635		9430019J16Rik	-	RIKEN cDNA 9430019J16 gene	ncRNA	4.381	0.931	0.529	nan	3.811	2.636	7.861	9.244	4.348	4.901	6.246	5.533	7.122	9.053	nan	9.779	6.758	6.361	1.609	1.010	0.842	1.125	1.143	0.925	6.774
5441	chr15	79911509	79914882	+	0	NA	Intergenic	B1_Mur4|SINE|Alu	18172	NM_001347041	80287	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	9.249	8.866	3.399	5.984	3.970	2.417	9.719	9.852	5.141	5.122	5.833	2.543	8.909	7.879	9.036	8.443	8.068	7.636	4.636	2.843	2.570	nan	3.228	2.561	8.909
1356	chr10	62382483	62384212	+	0	NA	3' UTR (NM_145419, exon 18 of 18)	3' UTR (NM_145419, exon 18 of 18)	-3439	NM_010438	15275	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	7.737	9.022	2.650	11.290	2.832	1.718	4.065	5.571	4.837	10.763	4.621	3.479	4.714	6.516	8.459	9.660	4.757	8.432	5.090	2.188	2.716	7.068	3.053	5.336	13.177
10782	chr4	138670632	138679297	+	0	NA	Intergenic	L2a|LINE|L2	49892	NM_001285930	212190	Mm.292226	NM_178671	ENSMUSG00000043621	Ubxn10	5730509E04Rik|A830047D02|Ubxd3	UBX domain protein 10	protein-coding	nan	1.251	0.624	1.489	1.320	0.833	1.042	1.398	nan	1.579	0.959	0.924	1.113	1.232	0.947	1.226	0.795	nan	3.231	2.357	2.221	4.984	nan	1.956	1.411
5208	chr15	58834728	58839954	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-13914	NM_175212	74868	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	3.089	9.067	2.966	4.356	1.906	0.850	nan	6.377	nan	nan	1.056	0.714	3.554	3.791	4.123	3.381	2.894	4.269	3.735	0.906	0.552	4.537	1.064	0.700	3.643
12216	chr6	49315761	49320438	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-1175	NM_175098	57895	Mm.32416	NM_175098	ENSMUSG00000050786	Ccdc126	6330407D12Rik|AA675040|AI465320|AL022711	coiled-coil domain containing 126	protein-coding	3.994	2.898	1.144	3.951	2.992	1.994	4.703	4.007	3.528	4.133	1.511	1.206	5.150	7.725	7.251	8.057	4.870	nan	nan	1.118	0.821	2.709	1.859	1.549	4.543
13318	chr7	80751229	80765315	+	0	NA	intron (NM_016721, intron 8 of 37)	intron (NM_016721, intron 8 of 37)	45059	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	7.448	6.751	3.869	nan	5.723	4.271	7.458	8.425	6.277	7.645	9.259	5.827	10.243	9.908	7.409	nan	7.161	8.923	8.970	5.684	4.042	7.055	6.112	5.467	nan
10966	chr4	152729535	152736952	+	0	NA	Intergenic	Intergenic	35703	NR_033138	330004	Mm.291863	NM_001033414		Gm833	-	predicted gene 833	ncRNA	0.096	nan	0.103	0.220	0.063	0.033	0.142	0.095	0.088	0.115	0.068	0.068	0.097	0.106	0.116	0.284	0.112	0.248	2.218	0.636	0.404	6.608	0.730	0.428	0.353
1153	chr10	20193307	20195349	+	0	NA	intron (NM_001198635, intron 1 of 17)	intron (NM_001198635, intron 1 of 17)	7526	NR_045350	73811	Mm.55644	NR_045350	ENSMUSG00000110754	4930405J17Rik	-	RIKEN cDNA 4930405J17 gene	ncRNA	2.345	0.447	0.444	2.715	1.920	0.323	2.593	4.784	4.211	3.402	0.651	0.961	6.157	4.915	5.161	5.733	3.520	4.255	1.416	1.327	0.297	3.595	2.171	0.793	4.141
1871	chr10	128141063	128142808	+	0	NA	intron (NM_001039080, intron 6 of 13)	RMER17C|LTR|ERVK	34633	NM_019711	56516	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	10.056	12.187	5.435	10.786	4.670	2.795	7.323	7.970	6.520	9.148	6.889	4.538	8.480	10.989	10.177	10.611	6.947	8.508	6.714	3.950	2.564	6.838	5.973	4.364	14.596
15721	chrX	45637488	45639191	+	0	NA	Intergenic	(GAA)n|Simple_repeat|Simple_repeat	547435	NM_026841	68800	Mm.336041	NM_026841	ENSMUSG00000037086	Prr32	1110059M19Rik	proline rich 32	protein-coding	4.901	6.081	1.941	4.873	1.694	1.150	3.882	3.687	1.902	4.730	3.920	2.018	3.061	6.349	3.409	4.396	3.062	3.561	2.834	3.111	1.611	2.820	3.746	2.520	6.618
5209	chr15	58843238	58846025	+	0	NA	Intergenic	RMER17B2|LTR|ERVK	-21204	NM_175212	74868	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	2.307	5.566	3.146	nan	1.736	0.922	1.942	2.990	nan	nan	0.797	0.566	1.806	1.751	2.403	nan	1.740	2.190	1.818	1.932	1.524	3.303	0.985	0.945	1.605
7843	chr19	47042302	47047843	+	0	NA	intron (NR_133574, intron 5 of 9)	B1_Mm|SINE|Alu	5834	NM_027654	71041	Mm.35413	NM_027654	ENSMUSG00000025050	Pcgf6	4933407A11Rik|AI604840|MBLR|Rnf134	polycomb group ring finger 6	protein-coding	2.844	3.027	1.984	nan	5.344	3.566	5.241	7.323	2.282	2.915	3.115	2.746	3.759	7.744	4.891	5.926	4.856	nan	3.333	3.884	2.699	4.344	5.046	3.529	3.589
4463	chr14	9135022	9140046	+	0	NA	Intergenic	L1Md_F2|LINE|L1	471144	NR_045968	74859	Mm.84041	NR_045968	ENSMUSG00000097898	4930455B14Rik	1700027C12Rik	RIKEN cDNA 4930455B14 gene	ncRNA	1.847	0.797	0.527	1.989	1.285	0.643	2.321	4.826	2.237	1.915	3.066	1.523	2.001	2.953	2.545	3.659	1.841	2.208	0.704	0.525	0.366	0.688	0.444	0.248	1.934
12643	chr6	118111967	118116725	+	0	NA	intron (NM_030165, intron 7 of 7)	intron (NM_030165, intron 7 of 7)	24794	NM_030165	78752	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	1.893	0.792	0.321	5.713	4.703	2.528	8.987	7.203	2.796	3.781	0.349	0.320	16.562	14.998	11.028	12.679	4.795	6.591	0.638	0.429	0.495	0.688	nan	0.700	13.989
2795	chr11	100854581	100856620	+	0	NA	Intergenic	Intergenic	-3751	NM_011488	20850	Mm.277403	NM_011488	ENSMUSG00000004043	Stat5a	AA959963|STAT5	signal transducer and activator of transcription 5A	protein-coding	6.503	nan	0.772	3.803	5.481	3.694	7.061	6.888	3.851	3.767	2.951	2.117	4.066	5.925	5.467	6.394	8.081	4.456	0.881	1.614	1.310	0.638	nan	nan	3.691
8517	chr2	112079252	112081124	+	0	NA	Intergenic	L1_Mus1|LINE|L1	-7607	NM_207150	258257	Mm.377396	NM_207150	ENSMUSG00000074946	Olfr1313	MOR245-23	olfactory receptor 1313	protein-coding	7.461	11.157	3.591	6.416	1.385	1.103	5.706	10.158	2.583	6.420	4.502	3.511	5.381	4.779	6.555	8.637	5.679	7.110	5.421	3.524	3.023	6.081	5.190	4.323	12.023
4830	chr14	73516318	73517395	+	0	NA	intron (NM_026119, intron 5 of 6)	intron (NM_026119, intron 5 of 6)	6807	NM_026119	67381	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	7.646	6.988	10.164	3.703	5.161	3.590	6.052	7.220	4.107	4.599	6.391	4.212	3.288	5.331	3.848	4.359	6.388	3.924	6.532	7.252	6.366	3.584	11.109	8.295	4.589
11157	chr5	34523948	34531535	+	0	NA	intron (NM_011893, intron 1 of 12)	intron (NM_011893, intron 1 of 12)	1957	NM_011893	24055	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	7.671	6.129	1.494	11.600	2.486	1.219	4.083	6.284	4.975	7.559	2.307	1.587	4.296	7.524	5.875	7.001	nan	nan	4.012	1.416	1.324	3.553	2.375	2.052	9.967
8123	chr2	32016333	32024332	+	0	NA	exon (NM_172268, exon 24 of 36)	exon (NM_172268, exon 24 of 36)	-30614	NR_106135	102466844		NR_106135	ENSMUSG00000099075	Mir7674	Gm27563|mmu-mir-7674	microRNA 7674	ncRNA	5.800	4.701	1.830	4.771	5.294	3.577	3.408	6.938	nan	3.468	4.519	3.463	3.549	4.451	3.822	5.515	3.618	4.057	4.281	3.086	3.148	3.179	5.409	4.942	5.328
3912	chr13	29050002	29051512	+	0	NA	Intergenic	Intergenic	34502	NR_045075	77920	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA	10.997	4.754	1.334	8.481	2.327	2.106	11.132	9.113	5.422	9.872	7.062	4.856	8.064	9.465	11.529	13.091	7.535	10.870	9.375	5.404	6.073	11.193	8.324	6.770	21.870
10908	chr4	149609780	149614105	+	0	NA	intron (NM_001290989, intron 1 of 17)	intron (NM_001290989, intron 1 of 17)	25474	NM_023051	65945	Mm.38993	NM_023051	ENSMUSG00000039953	Clstn1	1810034E21Rik|Cst-1|Cstn1	calsyntenin 1	protein-coding	8.715	11.153	3.844	7.417	6.336	5.246	7.773	8.179	5.139	8.699	8.690	4.854	7.199	9.706	9.024	8.332	4.681	7.337	8.216	2.887	2.099	10.339	6.940	7.688	11.946
6500	chr17	29403853	29407420	+	0	NA	Intergenic	Intergenic	44722	NM_001159538	26382	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	5.936	8.575	4.483	5.388	4.283	3.522	7.293	6.926	4.362	6.510	5.200	4.347	6.930	8.401	6.516	nan	6.850	5.780	6.147	4.016	4.063	5.446	4.060	4.330	6.923
6637	chr17	44347701	44355936	+	0	NA	Intergenic	MIRb|SINE|MIR	163246	NM_172621	224796	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg	chloride intracellular channel 5	protein-coding	3.666	0.549	0.372	2.245	3.134	1.979	3.083	1.618	2.626	2.955	0.579	0.330	3.177	6.450	4.199	4.978	nan	4.859	0.571	0.367	0.362	0.471	0.274	0.326	4.602
784	chr1	159010210	159012148	+	0	NA	Intergenic	Intergenic	-53741	NM_001085376	23850	Mm.458621	NM_001085376	ENSMUSG00000073530	Pappa2	PAPP-A2|PLAC3|Pappe	pappalysin 2	protein-coding	1.922	2.220	0.834	0.963	0.524	0.084	3.378	3.402	nan	1.622	1.327	2.542	2.584	4.957	2.972	nan	0.743	1.760	nan	0.601	0.520	1.682	nan	0.789	1.086
7601	chr19	16159246	16162911	+	0	NA	intron (NM_008139, intron 1 of 6)	MER68|LTR|ERVL	-3020	NR_033228	595139	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	2.380	1.025	0.733	1.227	1.210	0.783	1.102	1.568	1.537	1.243	5.648	1.899	0.950	1.146	1.130	1.453	1.208	nan	0.695	0.744	0.447	0.659	0.542	0.402	1.285
14424	chr8	88005630	88007044	+	0	NA	Intergenic	L1MA6|LINE|L1	-46742	NM_033327	94187	Mm.23452	NM_033327	ENSMUSG00000045333	Zfp423	Ebfaz|Roaz|Zfp104|Znf423|ataxia1|mKIAA0760|nur12	zinc finger protein 423	protein-coding	6.209	1.520	0.793	3.020	3.572	1.758	6.408	7.201	2.333	2.110	2.612	0.559	5.636	5.026	4.601	6.118	6.972	3.626	3.636	3.317	2.954	6.230	3.461	3.982	4.388
6300	chr17	5220086	5222864	+	0	NA	intron (NM_001085355, intron 4 of 19)	B4A|SINE|B4	197292	NM_175349	106557	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	3.050	1.572	0.823	2.733	2.226	1.181	2.111	2.382	2.807	3.436	1.846	1.028	3.394	5.815	2.753	3.380	2.623	3.149	2.124	1.103	0.686	2.686	1.620	0.442	3.633
9747	chr3	121325740	121331416	+	0	NA	intron (NM_024178, intron 3 of 3)	intron (NM_024178, intron 3 of 3)	36761	NM_024178	66789	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	3.389	0.767	0.414	3.173	5.547	3.364	4.798	4.879	4.869	5.329	3.631	3.327	4.691	6.192	4.519	nan	3.447	6.852	3.260	1.138	0.825	2.303	nan	1.254	4.044
1844	chr10	127026942	127029613	+	0	NA	intron (NM_025537, intron 4 of 5)	intron (NM_025537, intron 4 of 5)	2537	NM_025537	66399	Mm.29900	NM_025537	ENSMUSG00000040521	Tsfm	2310050B20Rik|9430024O13Rik|EF-TS|EF-Tsmt	Ts translation elongation factor, mitochondrial	protein-coding	5.138	2.191	0.849	2.236	3.007	2.065	0.985	1.864	1.375	2.126	9.848	4.190	1.099	2.538	1.751	2.159	1.428	1.774	3.112	1.534	1.618	1.975	nan	0.966	3.332
11324	chr5	67923900	67924976	+	0	NA	Intergenic	Intergenic	-17231	NM_001256184	330097	Mm.78496	NM_001256184	ENSMUSG00000094719	Gm5108	EG330097	predicted gene 5108	protein-coding	2.449	1.936	0.942	1.850	2.175	0.646	2.542	2.423	2.547	3.952	1.585	1.664	2.483	4.573	2.294	2.969	2.177	2.388	1.609	1.412	1.115	nan	2.238	1.181	2.512
5765	chr16	5216034	5218359	+	0	NA	intron (NM_001033220, intron 3 of 7)	intron (NM_001033220, intron 3 of 7)	5103	NM_001033220	239691	Mm.325639	NM_001033220	ENSMUSG00000051669	AU021092	-	expressed sequence AU021092	protein-coding	2.505	0.579	0.168	1.603	0.647	0.489	nan	2.116	1.684	2.678	0.892	0.304	3.080	2.451	2.056	4.403	1.213	4.185	2.223	0.895	0.359	1.477	2.161	1.025	5.297
14673	chr8	122348810	122352276	+	0	NA	Intergenic	Intergenic	10203	NM_133202	170732	Mm.154808	NM_133202	ENSMUSG00000039079	Trhr2	TRH-R2	thyrotropin releasing hormone receptor 2	protein-coding	6.998	3.718	1.538	3.723	3.372	2.466	3.850	8.289	2.879	4.079	4.123	2.800	4.173	6.311	5.585	6.833	5.412	4.679	0.894	1.643	1.499	1.201	0.795	0.699	7.019
7186	chr18	38737690	38738894	+	0	NA	Intergenic	Intergenic	-137024	NM_011898	24066	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty homolog 4 (Drosophila)	protein-coding	6.259	0.901	0.500	3.203	2.695	1.943	4.466	5.680	3.087	4.240	0.816	1.828	4.379	3.729	3.669	5.141	3.560	4.099	0.712	1.381	0.712	0.808	0.411	0.414	3.256
762	chr1	156896358	156907650	+	0	NA	intron (NR_027640, intron 2 of 19)	B4A|SINE|B4	37383	NM_001159966	78255	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	12.262	8.848	5.387	4.315	5.143	2.644	3.372	4.250	nan	5.006	6.968	3.933	3.298	5.129	3.720	7.995	4.529	5.032	nan	2.415	1.751	1.735	nan	1.393	7.309
10108	chr4	56948303	56960928	+	0	NA	Intergenic	Intergenic	-7186	NM_175518	242474	Mm.296632	NM_175518	ENSMUSG00000055296	Tmem245	A630051L19Rik|AI957324|D730040F13Rik	transmembrane protein 245	protein-coding	6.222	nan	0.843	5.213	4.146	2.561	6.300	6.052	5.661	8.397	2.373	1.509	8.416	9.279	8.599	10.230	5.441	7.572	nan	0.848	0.746	2.473	0.931	0.908	9.637
13839	chr7	140984391	140987343	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	17791	NM_001112715	68713	Mm.175661	NM_026820	ENSMUSG00000025491	Ifitm1	1110036C17Rik|DSPA2a|Mil-2|Mil2	interferon induced transmembrane protein 1	protein-coding	6.125	nan	0.346	2.609	3.706	3.599	8.852	13.043	nan	2.963	5.208	3.711	8.253	8.055	10.070	6.611	6.212	5.580	1.617	1.546	2.362	3.003	1.682	1.779	8.131
13845	chr7	142795055	142798238	+	0	NA	Intergenic	Lx4A|LINE|L1	103320	NM_009377	21823	Mm.1292	NM_009377	ENSMUSG00000000214	Th	-	tyrosine hydroxylase	protein-coding	6.001	nan	1.220	5.614	2.998	1.868	5.037	5.429	5.079	4.453	4.957	4.339	4.763	5.736	5.262	5.403	2.276	5.958	1.894	1.571	1.229	3.862	1.205	0.732	6.182
10346	chr4	106630987	106637760	+	0	NA	intron (NM_177667, intron 2 of 6)	intron (NM_177667, intron 2 of 6)	11924	NM_177667	230576	Mm.41945	NM_177667	ENSMUSG00000034919	Ttc22	4732467L16Rik	tetratricopeptide repeat domain 22	protein-coding	1.183	2.627	1.410	0.911	0.774	0.300	1.435	2.270	1.100	0.861	1.545	0.945	1.254	1.647	1.922	1.463	1.031	nan	3.890	2.696	1.747	6.245	2.861	1.839	1.760
12963	chr7	19822928	19825599	+	0	NA	Intergenic	Intergenic	-1508	NM_033601	12051	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	3.140	1.636	1.006	3.162	3.735	3.415	5.388	4.922	2.902	3.761	0.889	1.109	5.120	4.557	6.064	5.969	4.332	5.499	2.774	1.723	2.010	2.202	2.650	3.315	6.703
13067	chr7	29585720	29590083	+	0	NA	Intergenic	MMERVK10C-int|LTR|ERVK	-82441	NM_001081028	74206	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	8.365	2.711	1.743	5.348	6.313	5.061	9.070	12.893	5.413	5.582	7.124	4.944	9.545	9.502	9.412	8.867	7.697	9.164	1.393	1.256	1.236	1.790	1.694	1.401	7.661
4619	chr14	45476369	45483885	+	0	NA	intron (NM_146054, intron 4 of 14)	intron (NM_146054, intron 4 of 14)	49938	NM_146054	218952	Mm.210018	NM_146054	ENSMUSG00000037712	Fermt2	AA960555|Kindlin-2|Mig2|Plekhc1	fermitin family member 2	protein-coding	0.734	0.628	0.406	0.578	0.076	0.074	0.219	0.620	0.272	0.267	0.508	0.157	0.129	0.212	0.240	0.527	0.400	0.397	3.318	2.734	1.411	7.628	2.784	2.074	0.412
5281	chr15	68197577	68199054	+	0	NA	intron (NM_198644, intron 3 of 15)	RLTR14|LTR|ERV1	60541	NM_001145888	380993	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	6.121	0.787	0.520	2.240	1.946	0.754	3.464	5.193	2.710	2.858	0.471	0.403	7.153	5.558	4.783	5.343	6.140	5.995	0.352	0.543	0.166	0.682	0.543	0.391	3.416
10542	chr4	128470019	128472255	+	0	NA	intron (NM_001281955, intron 32 of 70)	intron (NM_001281955, intron 32 of 70)	138961	NM_177758	269585	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding	3.943	4.559	1.796	3.365	2.922	1.156	5.593	4.553	3.805	5.673	2.009	2.297	4.890	6.384	3.775	4.597	2.625	4.732	1.888	1.134	0.548	1.633	0.760	0.510	11.345
14705	chr8	124085213	124088461	+	0	NA	Intergenic	RMER13A2|LTR|ERVK	63364	NM_001029876	382038	Mm.334891	NM_001029876	ENSMUSG00000031976	Urb2	C77575|mKIAA0133	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	protein-coding	3.193	nan	0.459	6.864	2.523	1.804	3.619	10.798	3.699	5.552	0.986	1.612	6.486	7.145	4.916	7.542	3.408	5.642	nan	0.682	1.212	nan	0.692	nan	6.509
6118	chr16	52091806	52098005	+	0	NA	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	63356	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	6.804	5.460	2.316	7.933	7.599	4.820	2.762	6.252	5.531	6.310	4.350	1.679	4.734	9.599	4.697	4.348	2.380	8.492	0.902	0.972	0.417	1.519	0.555	0.543	3.934
5708	chr15	101823354	101825800	+	0	NA	Intergenic	Intergenic	-6408	NM_010668	16681	Mm.358616	NM_010668	ENSMUSG00000064201	Krt2	BB005427|Krt2-17|Krt2-2|Krt2e	keratin 2	protein-coding	2.263	0.850	1.092	1.001	1.317	0.722	3.786	4.504	1.681	1.488	1.567	1.956	2.291	1.847	2.731	2.264	2.125	2.530	6.783	4.882	4.036	5.695	8.451	7.637	1.206
9138	chr3	9644843	9649497	+	0	NA	Intergenic	ORR1D2|LTR|ERVL-MaLR	-37085	NM_133218	170753	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	5.012	1.111	0.734	2.376	2.716	2.176	10.932	6.478	3.436	4.120	0.585	1.302	8.075	8.484	5.838	5.651	7.735	5.191	1.023	1.159	1.125	0.719	1.044	1.437	5.800
2205	chr11	53913657	53916262	+	0	NA	Intergenic	Intergenic	-23256	NM_011396	20520	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	4.064	1.364	0.431	6.676	3.016	1.131	3.211	6.062	2.841	6.351	1.913	1.864	4.365	6.230	5.268	5.138	2.518	5.832	2.919	0.909	1.400	2.958	1.436	1.307	8.666
8071	chr2	29548991	29555534	+	0	NA	Intergenic	Intergenic	-67458	NM_054050	107746	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.781	11.510	5.917	0.997	0.447	0.437	0.625	0.777	nan	0.788	0.957	0.323	0.443	0.473	0.685	1.149	0.907	1.207	0.586	0.537	0.515	0.710	0.299	0.279	1.187
7965	chr2	11422152	11426529	+	0	NA	Intergenic	Intergenic	-25840	NR_040615	77543	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	8.962	5.401	1.613	7.325	2.936	1.406	5.348	15.029	3.487	6.028	3.873	2.637	8.179	6.191	7.557	9.545	7.819	6.814	2.176	2.447	1.735	6.151	1.634	0.933	13.391
8292	chr2	60760417	60762885	+	0	NA	intron (NM_001141932, intron 9 of 14)	intron (NM_001141932, intron 9 of 14)	-39048	NM_001159564	16420	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	7.621	1.493	1.110	4.154	4.547	1.912	5.438	7.437	4.960	4.462	3.910	2.565	4.846	5.892	4.823	6.715	7.034	5.357	3.004	2.934	1.442	3.624	3.702	2.267	4.677
6349	chr17	14000424	14002239	+	0	NA	Intergenic	Intergenic	52958	NM_001122977	635895	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	3.689	0.887	0.347	1.927	0.831	0.255	3.494	2.086	3.841	3.031	4.753	1.840	3.029	2.362	2.185	4.404	2.536	3.918	0.928	0.497	0.338	0.868	0.372	0.525	3.998
12175	chr6	38754815	38758040	+	0	NA	intron (NM_001294144, intron 2 of 14)	intron (NM_001294144, intron 2 of 14)	80884	NM_001136065	15258	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	3.168	2.374	0.763	4.056	1.937	0.988	1.503	1.278	2.130	2.147	1.066	0.743	1.015	2.106	1.943	nan	1.859	3.564	nan	1.180	0.895	nan	nan	0.568	2.560
11420	chr5	91307813	91311707	+	0	NA	Intergenic	L1MB3|LINE|L1	-26684	NR_040428	100503265	Mm.125059	NR_040428	ENSMUSG00000107198	Gm19619	-	predicted gene, 19619	ncRNA	4.321	1.699	1.047	2.614	3.338	1.768	5.589	5.818	3.952	3.538	5.091	4.068	6.073	6.765	6.633	4.832	3.226	4.871	0.802	0.530	0.799	0.697	0.390	0.274	2.839
7593	chr19	12559661	12566917	+	0	NA	Intergenic	L1_Mus3|LINE|L1	-10221	NM_001346545	107373	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	4.699	2.266	0.695	4.090	2.625	0.981	6.264	6.139	nan	3.158	3.560	2.357	3.004	5.296	5.762	4.722	4.006	4.612	1.734	1.665	0.862	3.468	2.670	1.526	9.098
22	chr1	10682450	10683794	+	0	NA	intron (NM_177834, intron 1 of 10)	intron (NM_177834, intron 1 of 10)	36823	NM_001289497	329093	Mm.336423	NM_177834	ENSMUSG00000042501	Cpa6	9030616D13Rik	carboxypeptidase A6	protein-coding	0.362	0.255	0.178	0.074	0.175	0.087	0.413	0.410	0.215	0.198	0.248	0.196	0.083	0.118	0.183	0.416	0.402	0.212	2.296	1.756	3.178	2.841	5.053	5.294	0.245
205	chr1	58449080	58450815	+	0	NA	intron (NM_022988, intron 2 of 6)	B1_Mur1|SINE|Alu	-4461	NM_001285827	70225	Mm.340195	NM_027351	ENSMUSG00000026035	Ppil3	2310076N22Rik|2510026K04Rik|Cyp10l	peptidylprolyl isomerase (cyclophilin)-like 3	protein-coding	15.519	18.433	6.095	12.359	5.451	4.651	14.003	8.124	2.657	12.175	5.008	2.539	12.741	12.202	13.786	17.446	5.579	13.724	5.955	3.505	4.393	8.969	5.379	6.360	21.333
15232	chr9	66548628	66550691	+	0	NA	intron (NM_001302122, intron 1 of 12)	intron (NM_001302122, intron 1 of 12)	-35066	NM_175206	74165	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0.622	0.498	0.666	0.357	0.257	0.321	0.567	0.537	0.439	0.415	0.460	0.374	0.165	0.459	nan	0.619	0.662	0.649	7.747	5.280	3.468	5.864	7.995	6.199	0.845
14834	chr8	130880333	130888152	+	0	NA	Intergenic	Intergenic	1620612	NR_144501	102635552		NM_001346808		Gm32856	-	predicted gene, 32856	protein-coding	7.459	nan	1.247	nan	2.449	1.474	nan	nan	4.999	6.989	3.113	1.310	6.272	4.309	5.801	10.057	6.394	8.390	nan	1.784	1.770	nan	2.804	nan	13.812
8990	chr2	165725170	165726948	+	0	NA	intron (NM_001271962, intron 8 of 15)	intron (NM_001271962, intron 8 of 15)	70761	NM_010165	14049	Mm.282719	NM_010165	ENSMUSG00000017897	Eya2	Eab1	EYA transcriptional coactivator and phosphatase 2	protein-coding	3.827	2.054	1.613	3.969	2.498	1.411	1.230	7.390	2.044	2.390	2.149	2.446	2.646	2.952	2.633	3.539	5.692	2.406	7.147	4.365	5.271	5.760	8.776	6.374	2.330
3296	chr12	37106562	37107641	+	0	NA	Intergenic	Intergenic	-1445	NM_008584	17286	Mm.341398	NM_008584	ENSMUSG00000036144	Meox2	AI528662|Gax|Mox-2|Mox2	mesenchyme homeobox 2	protein-coding	5.500	nan	0.675	1.109	1.428	0.357	2.603	3.043	nan	1.704	7.132	3.629	4.272	3.819	2.185	2.609	3.313	2.640	nan	1.005	0.830	1.739	1.261	1.243	2.603
13292	chr7	75116687	75119298	+	0	NA	intron (NM_001109753, intron 12 of 12)	intron (NM_001109753, intron 12 of 12)	87781	NR_131122	75205	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	-	RIKEN cDNA 4930533N22 gene	ncRNA	4.976	1.327	0.386	nan	0.628	0.421	3.390	3.553	2.316	2.421	4.506	2.616	7.007	5.013	4.724	4.104	4.642	4.932	2.735	1.164	0.446	2.298	1.241	0.621	6.342
12462	chr6	91531321	91542559	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	20905	NM_026309	67678	Mm.246693	NM_026309	ENSMUSG00000034192	Lsm3	1010001J12Rik|2610005D18Rik|6030401D18Rik|SMX4|USS2	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	4.903	0.812	0.403	nan	3.202	2.147	1.843	3.423	3.667	4.295	1.605	1.615	3.901	7.644	4.467	9.049	2.669	nan	nan	1.095	1.066	2.233	1.712	1.560	5.844
10847	chr4	142884630	142892957	+	0	NA	Intergenic	L2b|LINE|L2	247369	NR_105988	102465618		NR_105988	ENSMUSG00000106597	Mir7021	mmu-mir-7021	microRNA 7021	ncRNA	nan	1.131	0.604	1.685	2.711	1.540	6.539	0.482	nan	0.787	3.451	0.678	3.504	5.235	3.687	2.749	2.296	nan	0.466	0.340	0.255	0.307	nan	0.296	4.981
15703	chrX	34137854	34139509	+	0	NA	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	22903	NM_001085552	668960		NM_001085552	ENSMUSG00000095716	Btbd35f10	Gm14351|OTTMUSG00000016411	BTB domain containing 35, family member 10	protein-coding	5.758	6.133	2.706	3.518	2.981	2.607	1.874	6.191	2.130	3.702	3.553	1.392	2.957	5.706	3.530	4.312	2.294	2.458	2.819	3.587	2.524	3.776	4.112	3.765	4.353
5730	chr15	102388116	102390308	+	0	NA	Intergenic	ORR1D2|LTR|ERVL-MaLR	-17104	NM_013672	20683	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	4.608	0.812	0.527	2.277	2.130	1.634	3.173	3.205	3.578	3.003	1.263	0.893	4.473	5.748	4.925	4.192	4.687	4.019	1.049	0.747	0.494	0.632	0.343	0.480	3.188
2681	chr11	95263114	95265616	+	0	NA	intron (NM_053093, intron 1 of 3)	intron (NM_053093, intron 1 of 3)	2836	NM_053093	93670	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	4.957	nan	0.806	2.882	4.495	1.951	4.757	3.105	2.634	2.956	3.140	3.282	2.150	4.819	3.538	2.862	2.223	3.167	1.210	nan	1.520	0.738	nan	nan	3.264
8013	chr2	25049203	25053819	+	0	NA	intron (NM_146251, intron 29 of 34)	intron (NM_146251, intron 29 of 34)	-2868	NM_001177654	56876	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	11.020	15.272	4.430	8.824	4.467	2.024	10.715	13.664	5.157	8.462	7.978	4.336	10.430	12.365	11.108	12.251	7.645	8.818	2.390	2.775	1.907	4.293	2.299	1.537	16.313
1260	chr10	43205508	43211319	+	0	NA	Intergenic	(TTTG)n|Simple_repeat|Simple_repeat	-13073	NM_027772	71365	Mm.490430	NM_027772	ENSMUSG00000038240	Pdss2	5430420P03Rik|Gm60|Plmp|kd|mDLP1	prenyl (solanesyl) diphosphate synthase, subunit 2	protein-coding	3.965	nan	1.138	0.883	0.908	0.477	3.029	5.461	1.372	1.108	0.590	0.369	2.548	3.206	2.663	3.744	3.155	2.564	nan	1.012	0.682	1.066	0.850	0.639	3.187
8636	chr2	126774436	126779500	+	0	NA	intron (NM_029163, intron 4 of 6)	intron (NM_029163, intron 4 of 6)	6492	NM_029163	75083	Mm.389373	NM_029163	ENSMUSG00000027364	Usp50	1700086G18Rik|4930511O11Rik	ubiquitin specific peptidase 50	protein-coding	1.559	0.658	0.692	0.649	0.510	0.479	2.071	2.713	1.083	0.835	1.483	1.489	1.488	1.021	1.249	nan	1.783	1.105	7.008	5.123	7.759	5.785	7.027	8.234	0.959
12694	chr6	124865206	124877272	+	0	NA	intron (NM_013488, intron 5 of 9)	ORR1C2|LTR|ERVL-MaLR	-7322	NM_013533	14788	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	9.891	nan	2.226	6.117	6.767	4.670	9.700	11.323	5.553	7.980	5.127	3.210	8.596	13.260	8.803	11.516	11.208	7.398	5.493	5.469	4.099	4.915	6.874	6.362	10.947
874	chr1	173113378	173115554	+	0	NA	Intergenic	L1Md_F3|LINE|L1	16749	NM_146764	258759	Mm.389211	NM_146764	ENSMUSG00000062527	Olfr1408	MOR267-4	olfactory receptor 1408	protein-coding	7.993	2.440	1.558	4.604	5.689	4.234	5.126	4.900	4.611	4.943	2.814	2.488	6.828	7.069	5.613	9.628	7.159	5.992	1.301	1.065	1.091	0.705	1.002	0.953	5.333
13830	chr7	139958418	139961024	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-1961	NR_029589	387198		NR_029589	ENSMUSG00000065502	Mir202	Mirn202|mir-202|mmu-mir-202	microRNA 202	ncRNA	4.537	4.500	2.217	5.959	3.050	1.037	1.888	3.292	nan	3.075	2.956	2.896	2.193	3.094	2.950	2.849	2.163	5.819	1.262	0.660	0.410	1.854	0.974	0.751	3.070
14257	chr8	64089786	64091192	+	0	NA	intron (NM_009390, intron 8 of 20)	intron (NM_009390, intron 8 of 20)	115504	NM_009390	21892	Mm.418367	NM_009390	ENSMUSG00000053626	Tll1	Tll|Tll-1	tolloid-like	protein-coding	3.122	0.658	0.620	1.468	1.019	0.689	4.013	2.916	1.651	1.250	0.517	0.748	4.495	4.558	4.318	3.760	4.064	1.575	nan	1.643	0.871	0.595	1.047	1.269	2.766
1708	chr10	107903352	107904536	+	0	NA	intron (NM_001177567, intron 3 of 57)	intron (NM_001177567, intron 3 of 57)	8190	NM_001177567	628870	Mm.336090	NM_001177567	ENSMUSG00000091455	Otogl	EG628870|Gm6924	otogelin-like	protein-coding	3.831	1.226	0.894	1.826	2.107	0.695	3.152	1.160	1.735	2.512	2.832	0.926	4.315	3.502	2.917	4.009	3.766	3.153	0.635	0.781	0.103	0.635	0.997	0.083	4.513
2220	chr11	54784807	54785994	+	0	NA	intron (NM_178626, intron 1 of 5)	intron (NM_178626, intron 1 of 5)	2303	NM_178626	72729	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	3.604	10.174	3.641	3.242	5.693	3.286	2.309	2.647	2.336	2.667	1.639	1.275	2.002	3.591	2.991	2.906	2.149	3.199	nan	2.689	1.303	1.128	0.957	0.980	2.338
12117	chr6	31048290	31051981	+	0	NA	Intergenic	RLTR51A_Mm|LTR|ERVK?	12612	NR_029744	387222		NR_029744	ENSMUSG00000065610	Mir29a	Mirn29a|mir-29a|mmu-mir-29a	microRNA 29a	ncRNA	4.265	2.119	0.809	4.609	4.044	1.534	4.738	5.710	4.245	5.172	2.491	2.325	5.610	7.656	7.379	7.732	3.540	6.774	2.011	1.111	0.545	3.145	1.456	0.711	5.621
10983	chr4	154535394	154539905	+	0	NA	intron (NM_001177995, intron 1 of 15)	intron (NM_001177995, intron 1 of 15)	98718	NR_045643	320939	Mm.436738	NR_045643		5930403L14Rik	-	RIKEN cDNA 5930403L14 gene	ncRNA	6.187	3.542	1.102	6.933	3.575	2.165	3.942	5.701	4.424	4.683	2.843	2.490	4.058	5.865	5.117	6.010	2.021	6.066	2.311	0.953	1.327	3.954	2.004	1.747	6.349
2528	chr11	79603332	79604704	+	0	NA	intron (NM_175543, intron 1 of 14)	RSINE1|SINE|B4	12806	NM_175543	268451	Mm.130656	NM_175543	ENSMUSG00000017639	Rab11fip4	A730072L08Rik|RAB11-FIP4|mKIAA1821	RAB11 family interacting protein 4 (class II)	protein-coding	nan	4.645	2.137	3.400	2.266	1.347	nan	3.199	2.395	2.958	1.471	1.710	3.873	4.580	2.687	5.264	1.039	3.454	0.947	0.312	nan	1.629	0.809	0.443	1.919
1591	chr10	90904370	90911867	+	0	NA	intron (NM_001347053, intron 3 of 8)	intron (NM_001347053, intron 3 of 8)	78275	NM_001347053	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	nan	0.449	0.233	0.190	0.191	0.037	0.882	0.596	0.952	0.645	0.239	0.108	0.709	nan	0.991	0.927	0.635	nan	7.567	1.894	1.386	nan	nan	4.338	0.302
8043	chr2	26788247	26789696	+	0	NA	Intergenic	Intergenic	76024	NM_030718	80908	Mm.160386	NM_030718	ENSMUSG00000015787	Abo	NAGAT	ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase, transferase B, alpha 1-3-galactosyltransferase)	protein-coding	11.455	15.630	3.974	11.965	7.812	5.619	11.514	13.622	5.896	13.780	8.637	4.839	10.632	12.547	10.420	14.006	9.572	10.636	6.239	3.519	5.399	7.608	3.736	5.057	21.798
1677	chr10	98509371	98513642	+	0	NA	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-159639	NR_045179	667438	Mm.414522	NR_045179		Gm8633	EG667438	predicted gene 8633	ncRNA	6.733	0.777	0.586	1.474	3.594	1.978	6.482	4.516	2.671	3.377	nan	0.446	5.474	4.266	3.636	3.123	4.508	3.906	nan	1.135	0.552	nan	0.843	0.633	3.263
12942	chr7	17173791	17174989	+	0	NA	Intergenic	Intergenic	23990	NM_054059	384557	Mm.486145	NM_054059	ENSMUSG00000053228	Ceacam3	EG384557|Psg24|cea12	carcinoembryonic antigen-related cell adhesion molecule 3	protein-coding	2.025	0.939	0.860	1.769	1.521	1.165	1.306	2.007	1.929	1.491	1.287	0.855	4.031	3.042	2.776	2.473	1.333	3.400	1.906	0.844	0.479	1.344	1.088	0.888	1.298
11877	chr5	139846171	139868355	+	0	NA	Intergenic	Intergenic	-30420	NM_025604	66506	Mm.29070	NM_025604	ENSMUSG00000029551	Psmg3	1810042K04Rik|4930403H09Rik|AI303239	proteasome (prosome, macropain) assembly chaperone 3	protein-coding	7.906	4.847	1.301	9.985	3.851	2.419	5.723	5.819	5.408	6.779	2.937	1.949	5.207	7.766	7.424	8.125	4.606	7.856	3.367	2.183	2.093	4.485	nan	1.928	8.765
12511	chr6	97225123	97228811	+	0	NA	intron (NM_022992, intron 1 of 2)	ORR1D1|LTR|ERVL-MaLR	16175	NM_022992	65106	Mm.291014	NM_022992	ENSMUSG00000035199	Arl6ip5	5930404D22Rik|AV001879|Aip-5|Gtrap3-18|addiscin	ADP-ribosylation factor-like 6 interacting protein 5	protein-coding	2.955	1.134	0.790	2.244	2.512	1.386	3.646	3.749	2.140	2.059	2.452	1.933	2.713	2.899	nan	nan	3.395	2.602	nan	nan	2.549	4.561	3.255	2.755	3.260
2174	chr11	51816157	51819215	+	0	NA	exon (NM_199299, exon 12 of 12)	exon (NM_199299, exon 12 of 12)	39795	NM_199299	76901	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	9.320	10.834	6.606	6.919	6.961	5.691	6.465	nan	6.525	6.658	7.979	5.679	7.882	9.232	8.640	8.851	8.509	8.344	nan	3.621	2.945	nan	nan	2.763	7.000
1320	chr10	59038980	59042048	+	0	NA	intron (NM_172788, intron 3 of 9)	Lx2B|LINE|L1	181333	NM_001024911	103080	Mm.346842	NM_001024910	ENSMUSG00000019917	Sept10	4921515A04Rik|9430099J10Rik|AA408298|AI874685	septin 10	protein-coding	6.743	3.022	1.507	4.754	5.456	2.586	4.654	7.103	5.468	4.958	5.191	5.408	5.723	5.699	5.973	6.416	5.213	5.299	nan	2.020	1.199	2.432	1.863	0.587	3.927
8417	chr2	84886615	84891797	+	0	NA	Intergenic	CpG	-2514	NM_199223	269295	Mm.86447	NM_199223	ENSMUSG00000050896	Rtn4rl2	Ngr2|Ngrh1|Ngrl3	reticulon 4 receptor-like 2	protein-coding	11.417	5.452	2.483	9.276	4.811	2.770	10.180	12.174	5.487	8.107	5.848	3.071	8.097	12.963	7.990	12.921	9.514	9.166	3.046	1.870	1.433	3.232	3.443	3.035	13.694
7814	chr19	45822949	45824301	+	0	NA	intron (NM_198296, intron 24 of 25)	intron (NM_198296, intron 24 of 25)	-7562	NM_145703	80906	Mm.213204	NM_030716	ENSMUSG00000025221	Kcnip2	KChIP2	Kv channel-interacting protein 2	protein-coding	2.888	8.677	2.469	nan	1.254	1.278	4.999	4.115	2.017	4.694	2.662	1.775	4.031	3.983	4.863	7.885	5.375	5.244	1.108	0.584	1.214	2.839	1.039	2.081	12.680
11369	chr5	77518361	77529680	+	0	NA	Intergenic	RLTR25A|LTR|ERVK	58532	NR_131050	69370	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	3.161	2.929	1.295	4.219	2.275	1.509	2.708	3.188	2.104	3.393	1.815	0.980	2.971	6.414	3.117	nan	2.348	nan	0.689	1.247	0.908	1.686	0.570	0.617	3.401
8561	chr2	118522687	118524294	+	0	NA	Intergenic	Intergenic	21097	NR_138603	171543	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	2.522	0.979	0.243	3.105	1.007	0.385	0.807	1.489	1.684	2.929	1.047	0.212	2.277	4.529	1.940	nan	2.821	1.966	0.726	0.555	0.532	0.827	0.607	0.718	6.400
1026	chr1	192733968	192736071	+	0	NA	intron (NM_144881, intron 4 of 11)	intron (NM_144881, intron 4 of 11)	36200	NM_144881	226861	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	7.712	4.782	1.851	5.475	2.272	1.902	3.672	4.050	2.870	5.714	2.464	1.644	3.970	4.653	5.258	7.899	4.181	4.672	3.957	3.933	2.453	5.113	2.617	1.802	7.403
15179	chr9	63547312	63549374	+	0	NA	intron (NM_001311098, intron 5 of 21)	intron (NM_001311098, intron 5 of 21)	54150	NM_030068	78250	Mm.444612	NM_030068	ENSMUSG00000037801	Iqch	4921504K03Rik	IQ motif containing H	protein-coding	3.553	1.541	0.948	2.698	2.476	1.889	4.540	4.208	3.201	3.771	1.573	4.608	4.899	4.646	nan	4.307	3.585	4.099	nan	1.641	1.129	1.497	1.043	0.931	6.156
5606	chr15	97201611	97208653	+	0	NA	Intergenic	Intergenic	-41975	NM_172293	239647	Mm.130036	NM_172293	ENSMUSG00000044250	Pced1b	Fam113b	PC-esterase domain containing 1B	protein-coding	5.385	12.099	6.684	3.205	3.039	1.723	4.662	7.235	2.390	2.297	1.596	0.750	6.007	4.761	3.627	nan	4.474	3.879	0.827	1.805	1.174	0.541	0.666	0.456	3.546
12796	chr6	135312185	135316229	+	0	NA	Intergenic	Intergenic	-3823	NM_029595	76400	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding	6.160	1.527	0.549	5.319	4.000	1.991	9.729	6.605	4.962	5.120	5.175	3.971	9.663	7.902	7.688	10.819	6.856	6.192	nan	2.224	1.417	2.248	1.750	1.647	3.681
1390	chr10	67816020	67819911	+	0	NA	Intergenic	UCON7|DNA?|DNA?	94697	NM_178679	216049	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding	9.411	2.396	1.667	4.246	5.257	2.831	4.388	5.648	5.438	5.061	4.156	2.976	5.812	6.440	5.850	6.039	8.565	nan	3.639	3.397	2.420	4.201	3.682	3.077	5.410
12110	chr6	30547344	30549222	+	0	NA	intron (NM_001024698, intron 5 of 10)	intron (NM_001024698, intron 5 of 10)	6641	NM_001024698	232680	Mm.268855	NM_001024698	ENSMUSG00000071553	Cpa2	-	carboxypeptidase A2, pancreatic	protein-coding	0.393	0.796	0.576	0.445	0.348	0.367	0.306	0.403	0.524	0.386	0.623	0.375	0.118	0.308	0.505	nan	0.849	nan	6.016	4.407	3.345	4.409	6.296	5.351	0.614
8521	chr2	112315021	112316811	+	0	NA	intron (NM_133648, intron 1 of 24)	L1MB3|LINE|L1	31228	NM_133648	107723	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	3.070	0.794	0.411	3.099	1.135	0.302	1.976	3.958	2.099	2.221	2.224	1.232	3.654	3.821	3.765	5.929	3.970	4.319	0.846	0.478	0.274	nan	0.285	0.260	4.606
10268	chr4	94090342	94092793	+	0	NA	Intergenic	Intergenic	465229	NM_026368	67770	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	0.847	nan	0.155	0.307	0.482	0.287	0.595	0.928	nan	nan	5.544	1.830	0.308	0.717	nan	0.777	0.510	0.952	0.633	0.739	0.150	nan	0.350	0.195	0.538
13214	chr7	54263632	54264825	+	0	NA	Intergenic	Intergenic	-372339	NR_105746	102466619		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	9.350	9.025	3.257	7.361	9.816	5.746	9.583	13.028	5.141	7.825	7.698	4.159	8.580	12.054	7.329	8.420	9.818	6.698	5.854	4.413	5.486	4.637	6.158	5.964	9.889
3544	chr12	83288120	83292139	+	0	NA	intron (NM_058212, intron 7 of 8)	MTA_Mm-int|LTR|ERVL-MaLR	197607	NM_001267626	70127	Mm.151308	NM_058212	ENSMUSG00000021221	Dpf3	2810403B03Rik|6530402L11Rik|BAF45C|C78788|CERD4|cer-d4	D4, zinc and double PHD fingers, family 3	protein-coding	6.286	2.375	1.152	4.444	2.056	0.752	1.247	3.398	3.703	3.251	3.636	3.685	3.296	1.589	2.438	4.360	4.789	4.287	0.972	1.390	0.572	0.901	1.025	0.459	6.300
1469	chr10	79143176	79147844	+	0	NA	Intergenic	L1VL4|LINE|L1	-3306	NM_001103368	624765	Mm.469843	NM_001103368	ENSMUSG00000091888	Vmn2r80	EG624765	vomeronasal 2, receptor 80	protein-coding	7.734	5.418	1.221	nan	3.028	1.291	4.287	6.029	3.095	6.834	4.322	1.930	3.773	7.492	nan	5.995	3.443	5.374	nan	1.386	1.164	4.212	1.203	1.242	10.306
15815	chrX	136331886	136335269	+	0	NA	Intergenic	ORR1A0-int|LTR|ERVL-MaLR	63324	NM_001110234	12070	Mm.90787	NM_009750	ENSMUSG00000046432	Bex3	AL033356|DXWsu67e|Gcap27|Nade|Ngfrap1	brain expressed X-linked 3	protein-coding	2.869	0.567	0.274	1.174	0.781	0.365	2.325	2.972	2.269	1.936	5.459	3.654	2.537	3.284	2.349	2.789	2.028	1.376	1.220	0.805	0.424	1.135	1.172	0.787	2.843
4674	chr14	55048660	55054766	+	0	NA	Intergenic	B3|SINE|B2	13251	NR_073535	100151693	Mm.378403	NR_073535	ENSMUSG00000072492	Gm10364	EG545052|ENSMUSG00000072492	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	6.044	nan	1.016	6.183	5.370	3.234	4.539	12.763	4.888	8.087	12.318	5.763	5.904	11.513	7.509	4.888	5.035	4.424	1.971	4.067	2.791	3.743	3.399	2.926	8.923
10248	chr4	87830927	87838020	+	0	NA	intron (NM_027326, intron 5 of 10)	intron (NM_027326, intron 5 of 10)	-28150	NM_029931	70122	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.548	nan	0.514	0.870	0.509	0.319	0.538	nan	nan	0.478	0.341	0.567	0.307	0.336	0.412	0.619	0.416	nan	5.740	5.456	4.628	20.198	7.607	7.203	nan
9268	chr3	50708926	50710739	+	0	NA	Intergenic	Intergenic	-266219	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	3.327	4.623	2.190	1.828	1.010	0.270	5.484	5.283	1.532	2.780	2.051	2.210	5.748	4.019	4.310	4.960	4.624	3.003	2.488	1.827	0.633	5.296	2.723	1.394	5.219
1268	chr10	43617472	43623650	+	0	NA	intron (NR_033558, intron 2 of 2)	intron (NR_033558, intron 2 of 2)	27134	NR_033558	414125	Mm.244305	NR_033558	ENSMUSG00000075184	F830002L21Rik	F930017D23Rik	RIKEN cDNA F830002L21 gene	ncRNA	2.024	10.020	5.008	1.957	0.925	0.401	1.100	1.248	1.464	1.379	1.381	1.252	1.013	1.574	1.779	1.992	1.882	1.877	nan	1.887	1.290	2.552	1.798	1.729	2.513
12149	chr6	34569344	34571538	+	0	NA	Intergenic	L1_Mus3|LINE|L1	-28063	NM_001347100	109624	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	6.193	0.870	0.670	1.964	2.426	0.920	6.843	3.512	1.316	1.909	3.171	0.559	5.188	4.954	6.600	3.779	2.994	3.187	nan	1.085	0.312	nan	nan	0.456	1.975
12816	chr6	137839541	137841187	+	0	NA	Intergenic	Intergenic	85787	NM_172733	232449	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	2.833	0.258	0.125	0.785	0.862	0.511	4.677	2.738	2.660	1.998	2.102	1.396	3.486	4.488	nan	4.880	5.292	3.865	nan	0.419	0.715	0.332	0.442	0.427	nan
1977	chr11	11657804	11661271	+	0	NA	Intergenic	Intergenic	-26388	NM_009578	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	nan	7.933	4.218	0.791	0.272	0.258	0.351	0.388	0.600	0.659	0.399	0.237	0.244	0.262	0.400	0.625	0.465	0.703	0.503	nan	0.283	0.387	0.325	0.356	0.318
2023	chr11	21148740	21153477	+	0	NA	TTS (NM_023324)	TTS (NM_023324)	59784	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	4.260	1.904	1.611	3.918	5.209	3.373	1.897	5.474	3.410	4.014	2.762	1.693	4.233	5.394	2.777	3.425	4.982	3.507	1.182	1.349	1.015	0.898	1.134	0.922	2.232
4387	chr13	109964385	109967771	+	0	NA	Intergenic	L1_Mus1|LINE|L1	62269	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	nan	nan	0.266	0.236	0.339	0.017	0.323	0.173	nan	nan	0.146	0.410	0.120	0.188	0.188	0.427	0.310	nan	2.971	2.061	1.124	nan	1.268	1.055	0.426
9788	chr3	126329517	126334868	+	0	NA	Intergenic	Intergenic	-31660	NM_173451	271970	Mm.317021	NM_173451	ENSMUSG00000046561	Arsj	9330196J05Rik|D830047F08	arylsulfatase J	protein-coding	7.731	3.864	2.332	4.528	4.897	2.453	9.266	4.683	3.958	3.771	1.342	1.226	7.872	8.453	5.656	5.547	5.544	8.505	1.382	1.552	0.733	0.948	1.122	0.623	4.477
8331	chr2	70399708	70402373	+	0	NA	intron (NM_177376, intron 32 of 34)	intron (NM_177376, intron 32 of 34)	-73883	NM_022435	64406	Mm.423397	NM_022435	ENSMUSG00000075304	Sp5	-	trans-acting transcription factor 5	protein-coding	0.536	1.276	0.730	0.122	0.125	0.138	0.457	0.242	0.099	0.295	0.174	0.154	0.145	0.212	0.235	0.449	0.387	0.233	4.821	5.551	3.967	7.774	8.213	8.623	0.753
11822	chr5	136902020	136906780	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	-3750	NM_026073	67286	Mm.41779	NM_026073	ENSMUSG00000007987	Ift22	3110017O03Rik|AI835745|AI847427|Rabl5	intraflagellar transport 22	protein-coding	4.201	1.406	0.629	4.677	2.803	1.520	5.547	4.997	4.978	5.264	1.976	1.627	5.444	7.271	6.809	7.276	3.738	7.611	1.005	1.028	0.619	1.159	nan	0.469	4.631
3445	chr12	77113387	77117603	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	-122609	NM_001252614	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	5.406	0.876	0.373	3.622	3.077	1.650	5.485	6.789	3.322	3.964	4.520	2.938	7.814	8.131	7.201	7.550	5.868	5.458	2.217	1.127	1.135	2.724	1.364	0.900	6.275
1669	chr10	96387167	96389279	+	0	NA	Intergenic	Intergenic	162016	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	7.007	0.650	0.595	3.641	2.329	1.203	3.918	8.005	6.054	6.357	3.758	2.292	5.747	5.380	5.880	6.579	4.854	5.946	nan	1.106	0.526	nan	1.489	1.019	4.212
1825	chr10	122632871	122634604	+	0	NA	Intergenic	L1Md_A|LINE|L1	-45025	NM_176919	319468	Mm.489703	NM_176919	ENSMUSG00000034613	Ppm1h	A430075L18Rik|ARHCL1|C030002B11Rik	protein phosphatase 1H (PP2C domain containing)	protein-coding	10.910	10.253	4.622	9.291	6.758	5.214	9.452	7.598	5.572	12.257	6.797	7.105	8.659	10.770	8.084	9.667	9.948	7.596	6.291	3.454	8.887	5.747	5.938	7.397	15.634
10957	chr4	151504765	151505899	+	0	NA	intron (NM_001081557, intron 4 of 23)	intron (NM_001081557, intron 4 of 23)	356436	NM_001081557	100072	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	2.680	3.219	0.661	3.277	0.652	0.408	1.126	2.230	1.718	3.634	0.660	0.707	2.147	1.952	2.125	2.800	1.091	2.591	10.905	1.572	2.098	15.920	2.474	4.955	5.545
1285	chr10	52136590	52140513	+	0	NA	intron (NM_011282, intron 17 of 43)	L1Md_A|LINE|L1	56693	NM_011282	19886	Mm.236163	NM_011282	ENSMUSG00000019893	Ros1	Ros-1|c-ros	Ros1 proto-oncogene	protein-coding	11.606	nan	1.459	7.311	8.105	3.678	6.235	8.405	6.498	10.138	6.971	3.498	6.034	8.910	8.280	9.023	6.022	8.617	nan	2.396	1.594	2.880	1.754	1.962	9.744
9963	chr4	19894421	19896019	+	0	NA	intron (NM_175406, intron 2 of 7)	intron (NM_175406, intron 2 of 7)	27346	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	3.591	0.289	0.313	2.050	2.318	2.331	1.379	4.215	2.387	3.031	0.876	0.318	3.339	4.773	2.066	2.137	3.010	3.046	1.098	0.401	0.537	0.439	0.465	0.438	0.797
6401	chr17	24831548	24838382	+	0	NA	intron (NM_029197, intron 11 of 13)	intron (NM_029197, intron 11 of 13)	15337	NM_023480	68636	Mm.347964	NM_023480	ENSMUSG00000045316	Fahd1	1110025H10Rik|AV002085	fumarylacetoacetate hydrolase domain containing 1	protein-coding	7.129	3.498	1.086	3.273	1.942	0.939	9.763	7.417	2.926	4.032	3.608	2.026	4.851	5.327	6.192	8.288	6.067	4.364	3.797	1.977	1.794	2.965	3.691	3.198	12.183
7335	chr18	65588794	65594093	+	0	NA	intron (NM_207255, intron 2 of 5)	intron (NM_207255, intron 2 of 5)	11213	NM_207255	328977	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	9.935	7.910	2.717	7.702	9.494	6.066	4.603	6.958	6.565	11.113	4.820	1.708	7.960	7.208	6.001	5.889	4.552	10.564	1.870	1.402	1.486	1.952	1.402	1.878	8.395
3757	chr12	113822762	113828502	+	0	NA	Intergenic	Intergenic	281724	NM_174885	238406	Mm.188683	NM_174885	ENSMUSG00000043945	Adam6a	Adam6|tMDCIV	a disintegrin and metallopeptidase domain 6A	protein-coding	6.918	7.247	3.030	4.926	5.153	3.253	4.909	7.439	4.567	6.033	4.502	3.651	6.467	9.505	5.443	6.782	4.488	4.942	1.785	1.441	1.512	2.403	1.291	1.516	9.095
12873	chr6	147486887	147488845	+	0	NA	intron (NM_025911, intron 1 of 12)	intron (NM_025911, intron 1 of 12)	11995	NM_025911	67015	Mm.209774	NM_025911	ENSMUSG00000030301	Ccdc91	1700086G08Rik|1810060J02Rik|AU045683|AW555238|p56	coiled-coil domain containing 91	protein-coding	1.964	0.876	0.458	1.929	3.611	2.873	2.447	3.047	2.761	3.821	0.791	0.322	3.122	4.068	3.066	4.886	2.513	2.459	0.687	nan	0.236	nan	0.357	0.535	2.167
1959	chr11	7112595	7113921	+	0	NA	intron (NM_009622, intron 4 of 19)	intron (NM_009622, intron 4 of 19)	49769	NM_009622	432530	Mm.259733	NM_009622	ENSMUSG00000020431	Adcy1	AC1|D11Bwg1392e|I-AC|brl|mKIAA4070	adenylate cyclase 1	protein-coding	1.304	2.709	0.272	1.041	0.362	0.514	1.326	2.150	1.100	3.126	4.863	5.348	1.198	2.369	1.681	1.579	0.565	0.773	0.392	nan	0.092	0.739	0.131	0.187	2.912
13578	chr7	117327427	117336979	+	0	NA	Intergenic	Intergenic	-48776	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	2.106	8.977	7.500	1.831	1.678	1.001	0.982	1.244	1.532	1.367	1.135	1.221	0.728	nan	1.003	1.275	1.279	1.774	0.769	0.997	0.948	0.595	0.681	0.821	1.052
1242	chr10	41528156	41539016	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	14086	NM_016898	53599	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	2.515	9.801	5.202	2.578	1.001	0.829	1.264	1.550	1.818	2.171	1.942	1.294	1.550	1.831	2.089	2.734	2.029	2.302	2.407	1.855	1.196	2.353	1.823	1.595	3.069
11167	chr5	35399394	35401605	+	0	NA	Intergenic	Intergenic	11382	NM_010445	15371	Mm.358606	NM_010445	ENSMUSG00000067438	Hmx1	Nkx5-3	H6 homeobox 1	protein-coding	0.567	0.606	0.449	1.626	0.503	0.548	0.437	0.959	1.317	2.084	0.595	1.432	0.621	0.671	nan	1.858	nan	nan	6.872	1.993	2.873	6.411	6.115	6.860	1.831
12287	chr6	66914430	66918648	+	0	NA	intron (NM_001177556, intron 2 of 3)	L1MC1|LINE|L1	19648	NM_001177558	14701	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	3.723	3.374	1.913	3.154	3.227	1.084	5.075	5.259	3.133	3.207	1.555	0.980	5.177	8.116	8.597	8.906	4.580	5.398	1.472	0.731	0.608	1.838	0.976	0.702	4.999
1874	chr10	128258111	128260118	+	0	NA	Intergenic	Lx8|LINE|L1	4983	NM_133996	28194	Mm.439846	NM_133996	ENSMUSG00000051716	Apon	AI195275|D10Ucla2	apolipoprotein N	protein-coding	8.330	6.160	3.251	4.473	6.042	2.686	5.248	5.652	3.641	4.668	4.059	2.796	3.545	7.047	5.749	6.478	7.089	5.205	4.374	5.196	2.000	2.831	nan	3.540	7.325
3542	chr12	82880483	82885526	+	0	NA	intron (NM_001310478, intron 2 of 17)	intron (NM_001310478, intron 2 of 17)	56151	NR_046045	74283	Mm.398247	NR_046045	ENSMUSG00000100890	1700085C21Rik	-	RIKEN cDNA 1700085C21 gene	ncRNA	10.595	4.540	1.221	5.470	4.464	2.930	8.375	6.147	5.132	8.016	4.917	3.771	9.364	9.643	9.086	11.097	8.392	7.682	3.414	2.151	2.185	4.486	1.840	2.467	15.265
13403	chr7	91031504	91034448	+	0	NA	Intergenic	Intergenic	-57810	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	9.039	16.479	3.469	16.075	3.056	2.394	9.286	12.227	7.032	16.945	6.328	4.693	11.686	10.787	14.045	13.281	7.829	13.928	5.616	1.550	3.166	nan	3.257	4.646	20.079
6619	chr17	42827706	42830029	+	0	NA	intron (NM_009847, intron 6 of 17)	B3|SINE|B2	47557	NM_009847	12488	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	nan	0.679	0.386	0.219	0.183	0.106	0.757	1.215	0.335	0.374	5.124	0.383	0.215	0.609	0.685	0.689	0.443	0.437	1.987	0.222	0.279	0.617	0.624	0.423	0.561
11627	chr5	117631402	117633102	+	0	NA	intron (NM_001312914, intron 5 of 19)	B1F|SINE|Alu	218250	NM_001312914	333050	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	6.601	3.427	1.357	2.339	2.869	0.872	3.115	3.737	3.497	4.865	5.931	3.403	2.987	3.586	4.238	5.528	2.616	6.345	nan	nan	0.871	2.897	nan	0.845	4.794
10803	chr4	140262985	140265595	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-17479	NM_198610	230868	Mm.298731	NM_198610	ENSMUSG00000040972	Igsf21	BC055811|Gm141	immunoglobulin superfamily, member 21	protein-coding	1.377	1.169	0.369	3.468	1.547	0.738	2.979	2.712	nan	2.761	1.132	0.970	2.238	4.909	3.242	4.211	1.517	2.833	3.474	0.855	0.802	4.577	2.722	1.550	5.470
11814	chr5	136717912	136722417	+	0	NA	Intergenic	Intergenic	25987	NM_001085387	59310	Mm.5178	NM_021611	ENSMUSG00000005474	Myl10	1700027I08Rik|Mylc2pl|PLRLC	myosin, light chain 10, regulatory	protein-coding	3.441	12.258	5.526	3.245	1.614	0.831	2.454	2.893	1.675	3.062	1.428	0.582	1.504	3.031	3.404	3.396	2.034	2.457	2.431	1.212	1.495	2.316	nan	2.246	5.044
519	chr1	121304964	121306568	+	0	NA	3' UTR (NM_001271531, exon 6 of 6)	3' UTR (NM_001271531, exon 6 of 6)	21912	NM_001271531	72999	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	0.536	0.810	0.246	0.805	0.388	0.437	1.814	2.397	0.639	0.695	5.694	1.657	0.830	0.763	1.070	1.254	0.704	0.577	1.329	0.510	0.560	1.109	1.243	1.153	1.272
11390	chr5	88982262	88984918	+	0	NA	intron (NM_001197147, intron 3 of 25)	intron (NM_001197147, intron 3 of 25)	96330	NM_018760	54403	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	12.769	12.113	8.042	7.954	8.041	5.112	12.008	8.721	6.544	9.466	6.856	5.363	6.812	11.008	7.884	7.860	9.054	6.829	6.049	6.151	5.245	4.767	8.614	7.011	10.709
5070	chr15	25570791	25577879	+	0	NA	Intergenic	Intergenic	-48215	NM_019472	17909	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	4.645	1.317	0.757	2.883	3.222	2.089	5.884	5.851	4.386	4.929	2.465	2.096	5.837	4.582	4.285	4.622	4.422	4.402	1.589	1.000	1.022	1.712	1.181	1.156	3.306
14568	chr8	109099668	109109927	+	0	NA	intron (NR_126329, intron 2 of 9)	MIRb|SINE|MIR	29575	NR_126329	628686	Mm.203332	NR_126329	ENSMUSG00000097393	D030068K23Rik	-	RIKEN cDNA D030068K23 gene	ncRNA	6.828	0.722	0.745	3.618	7.749	6.478	5.190	8.130	5.161	5.190	4.719	3.449	6.855	7.487	5.614	6.453	6.884	5.685	1.943	1.879	1.952	nan	2.225	2.553	5.156
6383	chr17	24125304	24127981	+	0	NA	intron (NM_001286662, intron 1 of 13)	PB1D11|SINE|Alu	14952	NM_011062	18607	Mm.10504	NM_011062	ENSMUSG00000024122	Pdpk1	Pdk1	3-phosphoinositide dependent protein kinase 1	protein-coding	1.813	0.652	0.543	1.181	2.020	0.703	3.485	3.009	1.842	1.999	1.292	0.504	3.265	5.609	2.958	nan	2.488	1.870	0.562	0.490	0.071	0.307	0.482	0.394	2.331
4092	chr13	48355696	48365821	+	0	NA	Intergenic	MTEa|LTR|ERVL-MaLR	-86874	NR_045162	320315	Mm.185120	NR_045162	ENSMUSG00000097326	A330048O09Rik	-	RIKEN cDNA A330048O09 gene	ncRNA	nan	0.470	0.374	nan	0.222	0.098	0.296	0.452	0.540	0.861	1.945	1.008	0.234	0.436	0.394	0.693	0.407	nan	7.303	nan	2.512	7.017	5.473	4.841	nan
2451	chr11	74683719	74686193	+	0	NA	intron (NM_013625, intron 6 of 10)	intron (NM_013625, intron 6 of 10)	35461	NM_001081158	74148	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	3.510	0.898	0.653	4.654	4.216	3.167	4.043	5.006	5.018	5.042	1.776	1.930	5.466	8.015	nan	6.338	4.388	6.668	4.183	1.483	nan	3.335	2.195	2.021	6.420
8621	chr2	124683384	124685521	+	0	NA	Intergenic	B4A|SINE|B4	30871	NM_199239	214968	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	6.921	1.023	0.618	3.898	4.470	2.426	7.547	7.666	2.967	2.571	4.084	2.893	4.953	6.622	3.378	nan	2.468	2.975	nan	1.737	0.838	1.683	1.214	1.036	3.131
7059	chr18	21312022	21313829	+	0	NA	Intergenic	Intergenic	-12786	NM_001033445	381126	Mm.312276	NM_001033445	ENSMUSG00000042680	Garem1	C86169|Fam59a|Garem|Gm944|mKIAA4238	GRB2 associated regulator of MAPK1 subtype 1	protein-coding	3.115	0.708	0.351	1.932	1.781	0.997	0.999	1.136	2.184	2.723	1.131	0.810	3.452	4.165	1.868	3.711	2.513	3.430	1.008	1.637	1.205	1.953	1.610	1.010	4.344
5466	chr15	81159075	81161541	+	0	NA	intron (NM_001082536, intron 1 of 13)	intron (NM_001082536, intron 1 of 13)	30449	NM_001082536	223701	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	3.026	2.492	1.332	4.858	1.396	0.590	1.521	2.050	2.207	1.861	nan	1.497	2.007	2.018	2.440	2.362	nan	3.422	0.943	0.684	0.564	nan	0.525	0.392	2.804
3337	chr12	56402059	56404582	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-57426	NM_145442	217588	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	14.491	10.211	3.950	8.816	5.756	3.389	8.543	7.187	7.931	7.485	8.030	5.100	10.030	11.088	nan	12.579	11.961	9.843	6.276	5.621	2.884	6.639	6.052	4.885	14.518
1274	chr10	44717998	44723612	+	0	NA	Intergenic	Intergenic	-262057	NM_007548	12142	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	4.240	nan	1.806	2.938	2.929	1.665	4.040	2.793	3.244	4.130	2.342	0.812	3.314	5.440	4.677	4.987	4.034	4.347	nan	3.336	1.909	2.397	4.614	3.080	3.403
11761	chr5	130697157	130705537	+	0	NA	intron (NM_021371, intron 4 of 5)	B4A|SINE|B4	252555	NM_021371	140904	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	6.218	3.816	2.011	5.763	3.982	2.873	6.200	6.229	5.113	6.224	2.943	2.670	6.722	8.167	nan	7.493	6.880	6.694	nan	1.737	1.930	2.350	nan	2.498	7.932
5119	chr15	36800338	36801212	+	0	NA	Intergenic	RMER15|LTR|ERVL	-3846	NM_001253806	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	1.485	1.917	0.304	1.271	0.656	1.025	3.062	3.933	2.566	3.625	2.394	1.522	4.221	3.942	4.253	3.420	1.681	5.527	0.820	0.200	0.169	1.873	0.397	0.085	1.805
110	chr1	37655548	37659235	+	0	NA	intron (NM_028096, intron 1 of 9)	intron (NM_028096, intron 1 of 9)	62420	NM_028096	72097	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	0.992	9.232	4.414	0.751	0.409	0.266	0.720	0.705	0.870	0.676	1.238	1.177	0.386	0.748	0.923	nan	0.816	1.067	0.978	0.778	0.544	1.059	0.707	0.251	1.027
15644	chr9	123732873	123739647	+	0	NA	Intergenic	Intergenic	-18703	NM_033322	93730	Mm.378263	NM_033322	ENSMUSG00000025245	Lztfl1	5530402H04Rik|6130400H19Rik|AI414725|AW048545	leucine zipper transcription factor-like 1	protein-coding	4.277	1.335	0.381	3.948	nan	0.743	nan	nan	4.830	5.163	2.199	1.914	3.825	6.204	nan	6.579	3.200	6.187	2.334	0.948	0.561	2.547	1.287	0.924	8.338
4861	chr14	76596794	76598100	+	0	NA	Intergenic	Intergenic	-40558	NR_027699	72661	Mm.320384	NM_001160326	ENSMUSG00000052584	Serp2	2810032E02Rik	stress-associated endoplasmic reticulum protein family member 2	protein-coding	1.478	0.652	0.561	1.028	0.219	0.096	1.655	3.987	1.096	1.887	0.555	1.032	2.988	4.397	2.375	3.175	2.064	1.503	0.637	0.260	0.188	0.934	0.373	0.147	2.827
9253	chr3	40548461	40550809	+	0	NA	intron (NM_175515, intron 1 of 15)	intron (NM_175515, intron 1 of 15)	8868	NM_175515	380614	Mm.105309	NM_175515	ENSMUSG00000060798	Intu	9230116I04Rik|9430087H23Rik|Pdzd6|Pdzk6|mKIAA1284	inturned planar cell polarity protein	protein-coding	6.460	7.035	1.995	9.273	3.528	2.053	5.819	6.031	4.889	9.464	5.431	3.323	8.026	7.831	8.940	10.156	5.797	8.938	7.085	2.100	2.814	8.027	3.917	4.380	12.183
9246	chr3	37874123	37878438	+	0	NA	Intergenic	Intergenic	-22533	NR_040559	626410	Mm.389417	NR_040559	ENSMUSG00000106461	Gm20755	-	predicted gene, 20755	ncRNA	3.880	1.466	0.842	2.800	3.280	1.338	9.406	5.072	2.762	3.224	3.109	2.532	6.258	5.394	5.207	4.259	4.522	4.241	nan	1.285	0.859	nan	1.282	0.879	2.697
8215	chr2	38376713	38398046	+	0	NA	Intergenic	Intergenic	36071	NM_010710	16870	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	7.154	1.916	0.767	4.406	3.885	2.202	7.355	6.681	4.117	nan	1.941	1.737	7.114	6.110	6.258	10.663	5.555	7.462	1.985	1.057	0.839	1.356	1.009	0.483	10.569
8139	chr2	32441136	32449263	+	0	NA	intron (NM_146118, intron 1 of 10)	intron (NM_146118, intron 1 of 10)	-5258	NM_194335	71254	Mm.102341	NM_194335	ENSMUSG00000039164	Naif1	2310007O20Rik|4933440H19Rik	nuclear apoptosis inducing factor 1	protein-coding	6.246	5.201	1.950	6.665	3.630	2.783	6.131	7.720	nan	6.916	1.205	1.230	7.058	9.449	8.326	12.464	8.738	6.453	1.791	1.310	1.835	3.587	0.996	0.832	14.455
9646	chr3	104799656	104802053	+	0	NA	intron (NM_001163441, intron 9 of 20)	intron (NM_001163441, intron 9 of 20)	11820	NM_007484	11853	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	3.755	1.222	0.670	5.136	2.893	1.329	2.156	1.640	3.437	3.390	3.824	1.002	1.708	3.561	nan	3.200	1.623	6.137	0.899	0.753	0.690	0.631	0.982	0.744	4.739
2210	chr11	54334627	54337919	+	0	NA	intron (NM_001033597, intron 10 of 20)	intron (NM_001033597, intron 10 of 20)	21370	NM_001033599	216739	Mm.267478	NM_144823	ENSMUSG00000020333	Acsl6	A330035H04Rik|AW050338|Facl6|LACS|Lacsl|mKIAA0837	acyl-CoA synthetase long-chain family member 6	protein-coding	7.451	9.277	4.494	8.015	4.222	4.154	5.629	6.180	5.896	6.623	5.421	4.178	6.796	8.453	7.532	8.599	6.438	8.342	nan	2.964	2.086	5.604	3.258	2.675	7.891
2658	chr11	94384000	94385299	+	0	NA	intron (NM_029600, intron 1 of 30)	intron (NM_029600, intron 1 of 30)	8327	NM_029600	76408	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	1.478	nan	0.507	1.745	1.091	0.880	2.289	0.916	1.777	1.772	0.454	0.348	1.765	3.635	2.462	2.906	2.944	2.452	0.626	nan	0.283	0.326	nan	nan	1.781
11797	chr5	136157755	136172499	+	0	NA	intron (NM_178751, intron 1 of 2)	B3A|SINE|B2	5529	NM_178751	269717	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	5.187	2.523	1.715	4.899	5.695	3.917	5.657	7.637	5.234	6.313	5.613	5.410	5.638	7.965	4.973	6.088	5.484	5.242	3.983	2.761	2.742	4.229	nan	4.059	4.367
8778	chr2	148008010	148013345	+	0	NA	Intergenic	Intergenic	34787	NM_001291067	15376	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	5.896	0.705	0.481	2.822	4.176	1.986	6.453	5.606	4.293	3.479	1.638	2.405	5.749	4.587	5.409	7.009	4.791	6.684	nan	0.800	0.353	2.374	0.900	0.463	5.345
8112	chr2	31614751	31619362	+	0	NA	3' UTR (NM_001290548, exon 19 of 19)	3' UTR (NM_001290548, exon 19 of 19)	4635	NR_105964	102466214		NR_105964	ENSMUSG00000098904	Mir6998	Gm28024|mmu-mir-6998	microRNA 6998	ncRNA	7.329	3.069	1.095	7.218	3.521	2.354	4.645	8.132	4.281	5.442	3.682	1.879	6.028	5.758	6.237	7.859	5.699	7.012	3.992	2.390	2.140	5.196	2.482	2.194	10.353
9686	chr3	107914253	107916858	+	0	NA	Intergenic	Intergenic	16190	NM_026672	68312	Mm.458189	NM_026672	ENSMUSG00000004035	Gstm7	0610005A07Rik|AI894236|Cd203c	glutathione S-transferase, mu 7	protein-coding	3.967	0.510	0.507	2.433	1.522	0.867	3.491	4.451	2.546	2.679	1.770	0.860	4.400	3.471	4.576	4.826	3.981	3.081	0.862	0.846	0.568	1.333	0.778	0.390	3.741
6309	chr17	6171390	6174050	+	0	NA	intron (NM_054040, intron 1 of 13)	intron (NM_054040, intron 1 of 13)	34572	NM_054040	68842	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	7.331	2.292	1.394	4.259	3.880	2.137	6.114	5.129	4.549	3.112	3.994	3.443	4.133	5.204	4.905	nan	5.475	4.706	nan	1.249	1.056	1.199	1.325	0.661	4.646
10621	chr4	132087425	132092680	+	0	NA	Intergenic	B3|SINE|B2	-14739	NM_001128607	269587	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	6.385	6.118	2.866	5.549	4.066	2.170	6.339	7.029	4.363	5.259	6.244	3.199	5.670	6.336	nan	7.307	5.223	5.972	6.313	5.047	5.542	7.409	5.771	6.354	8.265
11057	chr5	22945034	22947490	+	0	NA	intron (NM_001081231, intron 1 of 3)	L1_Mur2|LINE|L1	-199378	NR_027362	330052	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	3.472	1.682	1.911	3.287	3.999	2.404	2.772	3.800	3.161	2.553	1.267	1.617	3.646	4.232	2.793	4.117	4.841	3.370	1.546	1.343	0.993	0.840	1.132	0.994	1.674
6644	chr17	44870906	44873767	+	0	NA	intron (NM_178652, intron 2 of 11)	intron (NM_178652, intron 2 of 11)	8549	NM_029257	75341	Mm.386821	NM_029257		4930564C03Rik	-	RIKEN cDNA 4930564C03 gene	protein-coding	5.963	11.387	2.266	6.949	2.791	2.087	4.915	1.979	2.996	8.058	8.627	4.988	2.907	5.735	4.932	4.527	nan	4.108	1.001	1.522	1.737	1.713	0.837	1.151	7.983
646	chr1	135901130	135905303	+	0	NA	intron (NM_001313701, intron 2 of 13)	MIRb|SINE|MIR	15991	NM_001313701	18772	Mm.4494	NM_019645	ENSMUSG00000026413	Pkp1	-	plakophilin 1	protein-coding	3.533	0.513	0.233	nan	0.340	0.119	2.093	2.710	1.086	1.653	0.298	0.443	3.078	nan	2.484	5.388	2.139	2.395	7.778	4.114	3.153	8.468	5.489	4.194	3.389
10703	chr4	135219245	135221253	+	0	NA	intron (NM_013885, intron 4 of 5)	intron (NM_013885, intron 4 of 5)	52511	NM_013885	29876	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	nan	5.419	3.696	0.685	1.014	0.511	1.236	0.959	nan	0.858	4.069	2.925	0.573	1.048	0.580	0.561	0.825	nan	5.851	3.818	3.809	4.154	5.347	6.079	0.886
14612	chr8	114014052	114016450	+	0	NA	Intergenic	Intergenic	-118323	NM_024446	67528	Mm.27889	NM_024437	ENSMUSG00000031767	Nudt7	1300007B24Rik|2210404C19Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 7	protein-coding	1.304	1.067	0.608	2.813	1.047	0.820	0.876	0.923	1.240	1.037	0.568	0.248	0.397	0.807	0.682	nan	0.723	1.441	3.098	3.974	4.347	8.988	2.945	3.428	0.842
12792	chr6	135013366	135028319	+	0	NA	intron (NM_026360, intron 10 of 11)	intron (NM_026360, intron 10 of 11)	9230	NM_026360	67755	Mm.166524	NM_026360	ENSMUSG00000030204	Ddx47	4930588A18Rik|C77285	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein-coding	6.855	0.824	0.514	4.458	5.824	3.677	7.685	8.274	6.136	7.585	2.667	3.590	7.947	9.359	nan	8.708	7.391	8.286	nan	1.348	1.268	1.756	2.542	2.075	nan
8530	chr2	116733820	116744844	+	0	NA	Intergenic	L1_Mm|LINE|L1	-139359	NM_026104	67356	Mm.131623	NM_026104	ENSMUSG00000027355	Tmco5	1700095F04Rik|Tmco5a	transmembrane and coiled-coil domains 5	protein-coding	4.022	0.536	0.448	1.154	1.150	0.567	2.409	3.629	2.996	2.712	1.346	0.626	nan	5.031	3.507	nan	4.186	4.175	0.577	0.821	0.367	0.799	0.513	0.251	nan
5322	chr15	74558270	74561048	+	0	NA	intron (NM_174991, intron 17 of 30)	intron (NM_174991, intron 17 of 30)	43463	NM_174991	107831	Mm.43133	NM_174991	ENSMUSG00000034730	Adgrb1	B830018M07Rik|Bai1|R75078|mKIAA4089	adhesion G protein-coupled receptor B1	protein-coding	2.677	nan	0.340	2.634	1.268	0.479	5.442	8.271	2.747	nan	1.935	2.122	6.966	4.390	5.767	5.538	4.147	4.265	3.878	1.630	0.884	nan	2.800	1.459	5.641
15872	chrX	163525493	163530586	+	0	NA	intron (NM_008177, intron 1 of 2)	intron (NM_008177, intron 1 of 2)	21697	NM_008177	14829	Mm.4687	NM_008177	ENSMUSG00000031364	Grpr	GRP-R	gastrin releasing peptide receptor	protein-coding	3.030	6.363	2.964	2.660	2.276	1.083	1.290	4.304	2.392	nan	1.919	2.070	1.703	1.886	2.184	2.390	1.699	2.902	0.998	1.363	0.683	0.749	0.474	0.341	1.179
11603	chr5	115720877	115723963	+	0	NA	intron (NM_001080808, intron 2 of 8)	intron (NM_001080808, intron 2 of 8)	9139	NM_001080808	75665	Mm.233914	NM_001080808	ENSMUSG00000041609	Ccdc64	2210403N09Rik|BICDR-1|Bicdl1	coiled-coil domain containing 64	protein-coding	6.476	9.221	4.860	8.022	5.940	6.945	7.887	5.724	4.761	9.656	5.067	3.953	7.018	10.203	7.877	6.315	4.767	6.943	nan	nan	5.338	3.679	nan	6.021	9.939
15795	chrX	103123312	103125002	+	0	NA	Intergenic	L1Md_T|LINE|L1	62507	NM_008671	17954	Mm.388694	NM_008671	ENSMUSG00000082229	Nap1l2	Bpx	nucleosome assembly protein 1-like 2	protein-coding	7.475	10.275	3.365	7.978	5.127	4.226	5.861	5.176	4.439	9.725	3.994	2.254	5.668	7.149	6.254	7.398	3.335	5.772	3.952	2.234	3.024	4.907	3.526	4.145	11.623
10282	chr4	94861932	94865576	+	0	NA	intron (NM_001290549, intron 19 of 22)	intron (NM_001290549, intron 19 of 22)	65089	NM_027089	67753	Mm.25097	NM_027089	ENSMUSG00000028575	Eqtn	1700028B15Rik|4930579C15Rik|Afaf|C81058|Eqtl|Eqts	equatorin, sperm acrosome associated	protein-coding	2.411	3.528	1.424	1.553	1.142	0.621	1.609	1.711	nan	nan	1.359	1.335	1.969	2.297	2.506	2.873	1.588	2.058	4.749	1.990	1.575	3.762	6.012	4.442	2.045
8491	chr2	102831650	102833426	+	0	NA	exon (NM_009851, exon 14 of 19)	exon (NM_009851, exon 14 of 19)	69127	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	1.959	0.947	1.463	1.798	3.058	2.198	3.257	2.525	3.458	3.020	2.004	1.240	4.273	4.777	2.609	4.233	4.483	2.923	0.502	0.523	1.055	0.639	0.641	0.947	2.371
4005	chr13	38743793	38745825	+	0	NA	Intergenic	B4A|SINE|B4	-85781	NM_025380	66143	Mm.490319	NM_025380	ENSMUSG00000001707	Eef1e1	1110003A02Rik	eukaryotic translation elongation factor 1 epsilon 1	protein-coding	4.919	nan	0.600	2.545	2.630	1.734	nan	2.091	2.825	3.390	0.762	0.220	3.310	5.876	3.220	4.408	3.195	4.267	0.317	1.121	0.789	0.451	0.458	0.762	5.453
8999	chr2	165905854	165910622	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-23400	NM_001252587	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	3.870	0.646	0.393	2.253	1.763	0.802	3.631	5.920	1.913	2.963	1.352	0.772	3.110	6.911	4.942	7.025	6.085	nan	nan	0.612	0.411	0.605	1.011	0.442	6.665
10235	chr4	86331939	86339735	+	0	NA	intron (NM_029967, intron 15 of 27)	intron (NM_029967, intron 15 of 27)	222466	NM_001081096	75811	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	4.400	nan	0.874	4.509	7.108	4.092	2.447	5.031	nan	4.496	2.058	1.717	2.792	3.979	4.634	4.787	2.823	nan	0.997	nan	1.313	5.329	1.058	0.772	nan
13583	chr7	117411435	117413069	+	0	NA	intron (NM_175645, intron 1 of 11)	intron (NM_175645, intron 1 of 11)	31273	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	3.781	5.347	5.328	2.716	2.535	2.035	1.440	1.900	3.037	2.530	5.169	3.457	0.767	1.678	1.984	1.993	1.651	2.304	3.077	1.918	1.742	2.159	1.409	1.561	1.892
10251	chr4	88593792	88598076	+	0	NA	Intergenic	Intergenic	-3549	NM_010507	15972	Mm.377092	NM_010507	ENSMUSG00000095270	Ifna9	Ifa9	interferon alpha 9	protein-coding	1.341	nan	0.238	0.671	0.578	0.343	1.959	2.617	nan	1.308	7.532	3.404	2.515	3.006	2.651	2.200	0.944	nan	0.784	nan	0.172	0.870	0.224	0.288	nan
13925	chr7	150645294	150647595	+	0	NA	Intergenic	Intergenic	5331609	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	nan	nan	0.170	4.296	1.030	0.570	2.293	1.950	nan	4.267	0.861	0.881	1.377	2.997	3.234	2.969	1.570	3.638	1.496	0.656	1.001	3.616	nan	1.777	4.813
12665	chr6	120312496	120315349	+	0	NA	Intergenic	Intergenic	-19363	NM_198884	330406	Mm.321840	NM_198884	ENSMUSG00000041372	B4galnt3	AB114826|B4GalNAcT3|C330047A21	beta-1,4-N-acetyl-galactosaminyl transferase 3	protein-coding	10.862	13.727	5.781	10.909	6.044	2.728	11.838	12.429	7.169	9.220	7.643	5.811	11.094	13.391	12.699	14.044	11.228	9.913	5.992	3.129	2.512	6.609	3.204	2.934	14.085
13199	chr7	53039088	53041320	+	0	NA	Intergenic	Lx|LINE|L1	851685	NR_105746	102466619		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	nan	2.402	1.980	1.337	0.912	0.483	2.661	4.364	0.795	2.041	1.279	0.854	1.751	2.562	2.680	nan	2.369	1.954	6.969	6.470	4.822	6.559	8.564	6.351	2.654
8342	chr2	71638051	71645669	+	0	NA	intron (NR_039557, intron 2 of 3).2	intron (NR_039557, intron 2 of 3).2	-77557	NR_037979	381371	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	3.720	2.468	1.341	2.307	1.648	0.914	3.633	7.035	2.391	1.893	3.917	3.916	4.407	3.742	4.062	4.438	3.701	3.577	4.632	2.665	1.898	4.823	3.040	2.333	4.818
15517	chr9	109797522	109799096	+	0	NA	Intergenic	Intergenic	-7659	NM_001303004	76998	Mm.442009	NM_001303003	ENSMUSG00000104614	Fbxw27	1700124P09Rik	F-box and WD-40 domain protein 27	protein-coding	3.627	1.015	0.827	2.234	2.086	1.548	2.806	4.088	nan	1.944	1.662	2.334	2.040	3.266	2.696	nan	2.916	nan	1.010	1.077	2.102	1.428	1.722	0.839	2.590
6407	chr17	25346893	25349417	+	0	NA	Intergenic	Intergenic	-2593	NR_033521	100503895	Mm.3301	NM_031187	ENSMUSG00000024173	Tpsab1	MMCP-7|Mcp-7|Mcp7|Mcpt7	tryptase alpha/beta 1	protein-coding	2.588	6.711	2.937	2.402	2.624	2.412	3.459	1.173	1.630	2.759	0.687	0.794	1.671	3.513	3.175	3.674	2.034	2.501	2.576	1.776	2.247	3.984	0.786	0.925	5.506
4626	chr14	46126097	46129250	+	0	NA	Intergenic	B4A|SINE|B4	43646	NR_002875	218963	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo	4.024	1.171	0.375	5.998	3.446	1.804	3.680	5.531	2.949	3.366	0.867	0.744	2.908	4.847	4.322	4.490	2.516	4.457	1.931	2.221	1.434	2.783	1.957	1.312	4.871
15673	chrX	11653965	11658579	+	0	NA	Intergenic	Intergenic	328450	NM_001114529	236663	Mm.473680	NM_001114529	ENSMUSG00000069038	H2al1j	EG236663|Gm4906	H2A histone family member L1J	protein-coding	2.836	7.661	2.663	5.187	1.689	1.469	2.920	3.470	2.495	6.497	2.846	1.695	2.425	2.843	3.488	3.857	2.798	4.527	3.880	1.361	3.016	4.429	2.481	4.439	8.485
8431	chr2	90909736	90913293	+	0	NA	TTS (NM_025991)	TTS (NM_025991)	6536	NM_025576	66461	Mm.23926	NM_025576		Ptpmt1	1110001D10Rik|2810004N20Rik|PLIP	protein tyrosine phosphatase, mitochondrial 1	protein-coding	8.961	6.225	2.590	5.565	4.299	2.572	6.057	6.759	3.729	6.958	3.895	2.680	5.486	8.111	5.305	7.774	7.735	5.618	2.784	3.288	2.543	2.637	3.404	3.100	10.742
7993	chr2	20438865	20443678	+	0	NA	intron (NM_001081006, intron 2 of 21)	intron (NM_001081006, intron 2 of 21)	-68776	NM_029895	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	6.834	3.587	2.070	4.825	3.375	1.245	5.396	5.684	5.003	5.047	5.402	3.504	6.456	6.313	6.459	7.813	6.349	6.129	1.333	1.151	0.737	0.892	1.494	0.810	7.927
6151	chr16	64774679	64776278	+	0	NA	Intergenic	RMER6C|LTR|ERVK	-4539	NM_026273	67609	Mm.212157	NM_026273	ENSMUSG00000059920	4930453N24Rik	AI649104|din	RIKEN cDNA 4930453N24 gene	protein-coding	4.798	0.742	0.560	2.070	5.331	2.967	2.898	4.283	2.587	3.013	2.740	1.495	4.403	7.331	2.771	4.097	2.000	5.157	0.626	0.325	0.210	0.308	0.761	0.191	3.513
11962	chr5	148282409	148290108	+	0	NA	intron (NM_029920, intron 8 of 14)	intron (NM_029920, intron 8 of 14)	106557	NM_001301424	11987	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	1.238	9.033	6.279	nan	0.547	0.440	0.664	0.850	nan	1.083	0.865	0.667	0.628	0.794	1.137	nan	0.811	1.429	0.888	1.079	0.661	0.757	0.620	0.415	nan
5885	chr16	21320545	21325251	+	0	NA	Intergenic	Intergenic	10458	NR_131983	76222	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	5.590	1.070	0.637	3.516	2.618	1.327	5.231	8.201	6.298	7.713	3.182	2.167	7.438	9.028	6.302	8.493	4.751	7.339	2.025	1.913	0.959	3.245	2.452	1.612	6.344
4351	chr13	102615120	102619500	+	0	NA	Intergenic	MERVL-int|LTR|ERVL	-76248	NM_008533	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly78|RP105	CD180 antigen	protein-coding	2.925	0.732	0.505	2.251	1.224	0.514	1.382	2.591	2.172	2.068	3.814	0.872	2.710	2.919	3.201	4.384	2.467	nan	0.642	0.578	0.617	0.730	0.494	0.196	3.134
4166	chr13	55925853	55939014	+	0	NA	Intergenic	Intergenic	-101008	NM_011097	18740	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	nan	0.457	0.268	0.421	0.214	0.160	0.238	0.252	0.205	0.462	14.327	0.657	0.155	nan	0.357	nan	0.267	nan	0.380	0.328	0.289	0.448	0.222	0.196	nan
33	chr1	16508670	16509988	+	0	NA	intron (NM_001347044, intron 4 of 13)	intron (NM_001347044, intron 4 of 13)	9786	NM_001347044	29819	Mm.216257	NM_025303	ENSMUSG00000025920	Stau2	-	staufen (RNA binding protein) homolog 2 (Drosophila)	protein-coding	9.705	7.423	6.003	4.472	8.883	5.730	9.911	3.358	3.133	12.203	5.944	4.282	5.193	7.356	4.851	8.293	8.095	5.163	5.014	7.599	11.336	4.311	9.253	13.884	8.523
14197	chr8	46350350	46355432	+	0	NA	Intergenic	Intergenic	-58220	NM_173789	234219	Mm.145631	NM_173789	ENSMUSG00000047171	Helt	A830086M02|Hesl|Heslike|Mgn|megane	helt bHLH transcription factor	protein-coding	3.304	0.808	0.485	2.128	1.451	0.914	2.581	3.075	2.424	2.516	0.787	0.924	3.610	2.899	4.887	5.781	5.158	3.551	0.524	0.547	0.479	0.543	0.546	0.365	2.911
5654	chr15	99720353	99722788	+	0	NA	intron (NM_010271, intron 5 of 7)	B1_Mur1|SINE|Alu	3977	NM_010271	14555	Mm.252391	NM_010271	ENSMUSG00000023019	Gpd1	AI747587|Gdc-1|Gdc1|mKIAA4010	glycerol-3-phosphate dehydrogenase 1 (soluble)	protein-coding	6.225	3.377	2.552	4.891	4.734	3.947	6.582	11.377	5.067	4.556	3.319	3.577	10.534	6.906	6.302	6.012	7.607	5.230	6.510	4.668	5.554	5.571	6.223	7.959	5.518
6990	chr18	4875679	4877158	+	0	NA	Intergenic	Helitron1Na_Mam|RC|Helitron	63932	NR_045881	100038439	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	ENSMUSG00000073646	predicted gene 10556	ncRNA	3.061	0.769	0.244	2.297	1.314	0.428	3.761	1.729	2.160	1.944	0.732	0.243	5.169	3.906	3.006	3.011	1.827	3.826	0.966	0.411	0.082	0.748	0.547	0.344	3.709
6235	chr16	93815978	93817588	+	0	NA	Intergenic	Intergenic	-15338	NM_001045529	338467	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	11.904	14.712	5.055	9.820	5.873	4.631	7.671	9.085	7.844	7.139	6.896	3.060	7.878	9.353	7.146	11.193	7.810	8.742	3.015	2.952	2.339	1.351	1.110	1.441	12.432
5619	chr15	98362308	98365264	+	0	NA	Intergenic	L1MA5A|LINE|L1	15322	NM_147036	259038	Mm.377802	NM_147036	ENSMUSG00000056184	Olfr283	MOR160-1	olfactory receptor 283	protein-coding	9.527	8.811	2.946	6.368	5.697	4.757	11.089	12.197	4.445	6.649	5.638	3.438	7.589	7.673	7.109	7.308	7.420	5.390	3.543	2.705	3.378	4.034	3.146	3.979	9.159
11547	chr5	109985371	109988414	+	0	NA	Intergenic	Intergenic	-9635	NM_145563	69504	Mm.441438	NM_145563	ENSMUSG00000066613	Zfp932	2310001H12Rik|Znf431	zinc finger protein 932	protein-coding	4.909	10.622	2.570	6.014	2.272	0.920	nan	1.949	2.281	4.879	3.135	0.772	3.938	6.213	4.288	5.841	3.478	4.433	nan	1.668	1.560	1.861	1.689	1.514	7.394
15334	chr9	77867300	77872778	+	0	NA	Intergenic	MMERVK10C-int|LTR|ERVK	-47326	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	6.262	2.355	1.067	4.819	3.405	2.335	5.194	8.349	6.749	6.596	2.442	2.876	6.949	6.416	6.989	8.888	4.941	7.717	0.728	nan	0.506	0.670	0.752	0.492	8.549
4577	chr14	31686457	31702625	+	0	NA	Intergenic	Intergenic	53484	NM_025295	26363	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	3.340	1.435	0.442	4.240	2.449	1.702	3.688	6.499	3.498	4.269	0.731	0.640	4.329	5.275	4.542	nan	nan	nan	1.305	0.641	0.736	nan	0.942	0.865	5.124
2013	chr11	20531020	20536723	+	0	NA	Intergenic	B3|SINE|B2	-9382	NM_021372	58172	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	5.273	nan	1.619	6.199	3.765	2.308	3.839	6.132	3.954	6.132	4.653	3.097	5.294	5.658	5.879	7.152	6.056	6.002	2.291	1.300	1.480	2.754	1.796	1.642	6.371
13519	chr7	108477410	108478448	+	0	NA	Intergenic	RLTR25B|LTR|ERVK	12603	NM_146307	258304	Mm.377424	NM_146307	ENSMUSG00000096679	Olfr498	MOR204-36	olfactory receptor 498	protein-coding	2.023	1.963	0.631	1.556	3.301	1.297	3.421	5.239	1.577	1.970	1.441	1.849	1.726	3.461	2.733	2.166	1.358	2.912	nan	2.344	1.033	3.496	4.146	2.041	2.444
9875	chr3	151100452	151103943	+	0	NA	Intergenic	RLTR51A_Mm|LTR|ERVK?	-335685	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding	2.665	0.902	0.570	4.821	1.483	0.299	1.170	0.992	2.303	2.307	1.048	0.629	1.058	1.651	1.565	2.187	1.506	3.527	0.566	0.918	0.282	0.929	0.395	0.352	1.897
7675	chr19	28084211	28087044	+	0	NA	Intergenic	BGLII_A|LTR|ERVK	-74461	NM_011265	19726	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	9.246	14.202	5.717	10.811	4.589	3.030	6.554	8.956	6.343	13.675	nan	4.276	7.423	10.046	8.637	9.154	8.899	9.237	5.590	4.998	4.623	8.636	8.397	8.745	16.288
264	chr1	66884830	66888182	+	0	NA	Intergenic	Lx5b|LINE|L1	-23197	NM_007381	11363	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	4.412	1.112	1.514	1.502	2.130	1.465	6.255	2.047	2.600	2.125	1.048	1.097	4.264	2.568	2.873	5.074	3.908	3.178	1.060	1.403	0.693	1.133	1.228	1.111	3.030
806	chr1	163821442	163827459	+	0	NA	intron (NM_001305643, intron 8 of 19)	RMER12C|LTR|ERVK	44867	NM_010629	16579	Mm.4651	NM_010629	ENSMUSG00000026585	Kifap3	KAP-3|KAP3|SMAP	kinesin-associated protein 3	protein-coding	1.035	10.698	6.719	nan	0.475	0.283	0.616	0.755	nan	0.615	1.644	0.857	nan	0.397	nan	0.898	0.733	1.010	1.201	0.716	0.407	nan	nan	0.348	nan
4960	chr14	120543421	120544633	+	0	NA	Intergenic	Intergenic	65566	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	2.277	0.684	0.317	1.405	1.006	0.069	1.951	4.220	2.020	2.448	1.460	0.563	3.067	3.456	3.568	3.176	1.917	3.666	1.562	0.526	0.619	1.096	1.002	0.591	2.642
1885	chr11	3233910	3238006	+	0	NA	intron (NM_023743, intron 13 of 18)	B3|SINE|B2	30428	NM_007879	13494	Mm.3250	NM_007879	ENSMUSG00000020457	Drg1	AA408859|AI132520|Nedd3	developmentally regulated GTP binding protein 1	protein-coding	5.415	7.566	2.920	6.507	5.136	3.790	6.134	3.829	3.713	2.991	9.325	5.982	2.951	5.199	3.559	3.815	2.935	3.910	1.761	nan	2.447	1.289	1.352	1.636	4.045
15781	chrX	97972118	97973844	+	0	NA	Intergenic	L1Md_T|LINE|L1	-175776	NM_013476	11835	Mm.39005	NM_013476	ENSMUSG00000046532	Ar	AW320017|Tfm	androgen receptor	protein-coding	3.710	2.363	0.640	3.190	3.829	2.294	3.984	5.073	2.498	4.104	4.343	3.251	3.164	6.030	4.310	4.553	4.017	3.347	4.452	3.600	2.113	3.566	4.688	3.477	5.657
4899	chr14	79918245	79924291	+	0	NA	Intergenic	L1Md_A|LINE|L1	-52092	NR_033535	100038734	Mm.387484	NR_033535		Gm10845	ENSMUSG00000075496	predicted gene 10845	ncRNA	5.667	14.007	8.324	5.490	3.800	1.616	3.331	5.020	4.579	3.771	3.398	2.488	3.283	4.376	5.102	5.226	3.527	5.243	2.054	2.122	1.221	0.855	1.696	0.994	4.135
13009	chr7	25891864	25895059	+	0	NA	Intergenic	RMER1B|Other|Other	-4197	NM_009999	13088	Mm.218749	NM_009999	ENSMUSG00000030483	Cyp2b10	Cyp2b|Cyp2b20|p16	cytochrome P450, family 2, subfamily b, polypeptide 10	protein-coding	1.115	9.076	5.970	0.729	1.315	0.687	0.706	0.660	0.701	0.554	0.625	0.549	0.277	0.595	0.594	0.638	0.670	0.786	0.959	1.223	0.871	0.941	0.679	0.782	0.809
10054	chr4	46603127	46607246	+	0	NA	3' UTR (NM_198664, exon 13 of 13)	3' UTR (NM_198664, exon 13 of 13)	-3257	NM_001164804	107684	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	5.840	2.816	1.083	2.733	3.417	2.713	5.246	5.042	3.488	3.594	4.268	2.995	3.584	5.403	3.112	2.878	2.331	nan	2.361	2.481	2.496	nan	1.751	1.212	4.813
2905	chr11	106473136	106476083	+	0	NA	intron (NM_023913, intron 1 of 21)	(TAGA)n|Simple_repeat|Simple_repeat	13187	NM_023913	78943	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	6.687	6.365	2.308	8.337	3.952	3.138	5.076	6.577	nan	nan	5.254	3.215	5.452	6.970	6.491	7.870	5.422	7.230	4.119	2.161	3.482	5.196	2.575	4.000	8.771
12232	chr6	51473741	51475239	+	0	NA	intron (NM_007624, intron 2 of 5)	B1_Mm|SINE|Alu	3874	NM_007624	12417	Mm.280968	NM_007624	ENSMUSG00000029836	Cbx3	HP1g|M32	chromobox 3	protein-coding	5.828	7.170	3.428	4.268	2.757	1.530	4.655	5.209	2.894	4.936	1.979	1.466	2.030	3.644	4.093	5.188	2.556	nan	nan	1.981	4.270	3.876	1.827	2.204	4.716
5612	chr15	97641775	97647549	+	0	NA	Intergenic	MLT1A1-int|LTR|ERVL-MaLR	61160	NM_028003	71919	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	4.521	2.857	0.687	5.055	2.948	1.988	3.338	7.415	2.469	3.341	0.950	0.758	3.536	5.327	5.013	4.836	2.898	5.351	4.173	1.587	1.381	4.411	2.598	2.308	6.926
7659	chr19	24505504	24511835	+	0	NA	intron (NM_008846, intron 1 of 14)	intron (NM_008846, intron 1 of 14)	-31195	NM_026520	68034	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|ENSMUSG00000051082|Gm9849	family with sequence similarity 122, member A	protein-coding	nan	0.834	0.406	nan	1.400	0.701	1.979	nan	1.614	1.728	nan	0.714	1.867	1.880	2.267	2.896	1.813	2.623	nan	1.852	1.587	5.324	nan	2.380	2.498
6519	chr17	30336521	30337977	+	0	NA	intron (NM_172618, intron 6 of 11)	intron (NM_172618, intron 6 of 11)	58931	NR_030688	623169	Mm.440508	NR_030688		Gm6402	EG623169	ribosomal protein S17 pseudogene	pseudo	3.126	4.357	1.683	3.662	1.798	1.054	4.458	2.547	2.327	2.563	2.100	1.191	2.419	2.707	4.686	3.954	1.797	3.069	1.710	1.133	1.653	3.337	1.173	1.068	5.738
556	chr1	129112956	129122591	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-155531	NM_172485	210417	Mm.380518	NM_172485	ENSMUSG00000042581	Thsd7b	1700074E13Rik|B930082A18|D130067I03Rik	thrombospondin, type I, domain containing 7B	protein-coding	7.088	nan	0.933	3.290	3.275	1.901	2.863	5.037	4.026	5.102	3.380	2.136	3.932	5.121	4.294	7.062	3.730	5.113	nan	0.793	0.814	0.684	0.677	0.523	5.289
717	chr1	140509408	140511160	+	0	NA	intron (NM_001081027, intron 16 of 27)	intron (NM_001081027, intron 16 of 27)	146118	NR_040604	75910	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA	2.503	10.919	6.777	nan	1.827	0.697	0.654	1.107	1.422	1.213	0.732	0.548	0.549	nan	0.818	nan	1.107	1.782	0.458	1.110	0.790	0.794	0.408	0.355	nan
7882	chr19	54119572	54122576	+	0	NA	Intergenic	L1MEc|LINE|L1	75892	NM_007417	11551	Mm.235195	NM_007417	ENSMUSG00000033717	Adra2a	AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR	adrenergic receptor, alpha 2a	protein-coding	0.716	1.512	0.490	1.568	0.151	0.164	0.781	nan	0.982	1.542	0.130	0.290	0.498	0.704	nan	0.798	0.595	0.711	2.665	1.979	2.817	7.745	3.516	5.264	2.341
2817	chr11	101740404	101741635	+	0	NA	intron (NM_144831, intron 8 of 22)	intron (NM_144831, intron 8 of 22)	8063	NM_144831	217207	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	3.389	1.639	0.609	2.116	2.037	2.036	1.668	3.020	2.850	3.742	2.107	1.815	2.055	4.235	3.659	3.550	2.597	3.418	1.241	nan	1.467	1.575	1.181	nan	2.793
6111	chr16	49378460	49382023	+	0	NA	Intergenic	Intergenic	-319053	NM_028680	73916	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	0.751	0.345	0.501	0.209	0.146	0.205	1.117	nan	0.357	0.293	0.265	0.028	0.355	1.404	0.877	0.549	0.474	0.422	2.759	2.370	1.402	4.510	2.304	1.848	0.340
7838	chr19	46715511	46721309	+	0	NA	intron (NM_020577, intron 7 of 10)	RMER6C|LTR|ERVK	10967	NM_020577	57344	Mm.28566	NM_020577	ENSMUSG00000003559	As3mt	2310045H08Rik|Cyt19	arsenic (+3 oxidation state) methyltransferase	protein-coding	4.828	3.068	1.130	6.417	4.300	2.219	5.023	5.054	3.540	5.185	3.238	3.043	4.581	5.604	4.936	6.227	4.295	5.936	1.139	1.892	1.495	4.571	1.035	0.770	7.603
7250	chr18	55089009	55093944	+	0	NA	Intergenic	Intergenic	-101296	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	5.199	nan	0.741	3.827	4.590	1.939	3.769	2.596	3.934	4.584	2.926	2.795	7.403	5.701	3.569	6.927	5.212	5.510	nan	1.947	0.904	nan	2.850	1.597	4.592
5436	chr15	79722122	79729144	+	0	NA	intron (NM_001205346, intron 17 of 17)	intron (NM_001205346, intron 17 of 17)	16903	NM_194342	223697	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	nan	nan	3.726	7.803	6.900	4.920	nan	3.592	1.358	nan	nan	0.851	2.704	nan	2.444	3.057	nan	2.493	1.577	1.313	0.768	nan	1.279	1.079	3.990
8299	chr2	63932631	63935449	+	0	NA	Intergenic	Intergenic	163998	NM_001267846	60344	Mm.130769	NM_021716	ENSMUSG00000075324	Fign	fi|fidget	fidgetin	protein-coding	1.868	1.407	1.119	2.139	1.195	0.937	0.606	0.778	1.179	0.977	0.558	0.997	0.584	0.956	0.762	0.834	1.237	1.092	4.049	1.583	1.131	0.972	6.833	5.036	0.735
2249	chr11	59014618	59016401	+	0	NA	intron (NM_199152, intron 88 of 89)	intron (NM_199152, intron 88 of 89)	37416	NM_053168	94091	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	3.246	5.165	0.853	4.231	1.245	0.285	2.498	2.130	1.815	2.711	1.912	1.138	2.213	nan	2.559	4.177	2.317	3.378	nan	1.400	0.420	1.780	1.167	0.732	7.054
3353	chr12	57505301	57508127	+	0	NA	Intergenic	Intergenic	39407	NM_008259	15375	Mm.4578	NM_008259	ENSMUSG00000035451	Foxa1	Hnf-3a|Hnf3a|Tcf-3a|Tcf3a	forkhead box A1	protein-coding	2.981	4.109	1.844	2.427	1.036	0.412	4.636	3.023	3.270	3.801	0.985	0.649	6.769	6.076	5.484	4.677	4.304	6.055	7.125	1.262	0.888	2.705	2.408	1.251	3.282
5678	chr15	100494129	100500485	+	0	NA	Intergenic	B1_Mur1|SINE|Alu	-2068	NM_153407	207785	Mm.294969	NM_153407	ENSMUSG00000044636	Csrnp2	CSRNP-2|Csnrp2|taip-12	cysteine-serine-rich nuclear protein 2	protein-coding	5.661	9.638	3.504	3.238	1.645	1.009	4.000	7.563	2.275	2.471	2.178	0.944	3.264	3.501	4.459	3.914	4.686	2.956	0.824	1.529	1.412	0.918	0.682	0.618	4.496
1605	chr10	92883585	92888476	+	0	NA	intron (NM_001347060, intron 53 of 67)	(TC)n|Simple_repeat|Simple_repeat	-163612	NM_008682	17997	Mm.2998	NM_008682	ENSMUSG00000019988	Nedd1	-	neural precursor cell expressed, developmentally down-regulated gene 1	protein-coding	6.946	1.356	0.610	3.299	5.816	2.511	2.563	5.218	4.018	4.497	6.932	3.312	4.155	7.413	5.462	5.194	2.930	nan	0.568	0.596	0.605	nan	nan	0.250	5.499
8957	chr2	163964888	163972364	+	0	NA	Intergenic	Intergenic	-26571	NM_018753	54401	Mm.34319	NM_018753	ENSMUSG00000018326	Ywhab	1300003C17Rik|14-3-3b	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	protein-coding	5.031	2.792	1.751	1.989	1.932	0.787	4.481	6.947	4.164	2.849	1.103	2.116	5.711	3.996	4.575	6.484	5.061	5.857	nan	0.947	0.738	1.526	1.483	0.858	nan
6892	chr17	81199940	81201948	+	0	NA	Intergenic	Intergenic	-135859	NM_028138	72167	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	6.077	1.841	0.330	8.082	4.421	2.741	6.727	3.956	4.524	5.741	7.979	3.685	3.382	6.063	5.078	6.554	3.932	6.274	1.403	1.472	0.970	2.475	1.171	1.213	6.741
2431	chr11	72758182	72760458	+	0	NA	intron (NM_009671, intron 20 of 24)	(TCTG)n|Simple_repeat|Simple_repeat	36519	NM_001024926	192986	Mm.194755	NM_001024926	ENSMUSG00000057778	Cyb5d2	9330151E16Rik|Gm2	cytochrome b5 domain containing 2	protein-coding	8.070	3.397	1.267	7.242	2.443	1.597	5.881	5.680	5.032	6.152	3.593	1.874	7.036	7.638	8.563	10.459	6.572	9.416	4.787	2.900	1.994	4.936	nan	1.674	11.440
15593	chr9	120647611	120651088	+	0	NA	Intergenic	L1MD2|LINE|L1	72018	NR_073359	76100	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	3.443	1.581	0.523	4.402	1.703	1.071	4.294	3.847	3.791	3.739	8.188	4.830	4.429	6.393	4.442	5.638	1.816	5.269	0.938	0.739	0.466	1.393	nan	0.481	3.492
6373	chr17	22560223	22562194	+	0	NA	intron (NM_001104573, intron 4 of 5)	intron (NM_001104573, intron 4 of 5)	12065	NM_001104573	210876	Mm.390947	NM_001104573	ENSMUSG00000095093	Vmn2r111	EG210876|V2rp2	vomeronasal 2, receptor 111	protein-coding	7.057	5.174	2.626	5.827	4.164	2.424	6.357	4.543	4.272	5.514	4.751	3.746	5.016	7.064	5.520	7.748	6.115	6.449	4.958	2.830	2.985	4.171	4.490	3.421	6.958
6299	chr17	5205546	5208414	+	0	NA	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	211787	NM_175349	106557	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	4.479	1.774	0.709	3.735	2.896	1.327	1.945	1.944	2.418	2.660	1.788	1.458	2.139	3.491	3.068	4.926	2.897	3.338	nan	1.103	0.507	1.790	1.374	0.498	3.543
1945	chr11	6288431	6290189	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-2287	NM_001252287	18293	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	7.072	11.731	5.310	8.715	7.875	7.939	6.363	6.987	4.321	13.070	5.067	3.958	5.322	8.030	5.513	7.761	5.526	6.744	5.287	nan	9.006	5.531	6.105	10.294	11.115
9075	chr2	173484429	173486366	+	0	NA	Intergenic	B1F|SINE|Alu	-37195	NM_028158	72221	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	7.150	8.823	2.989	8.479	3.659	3.618	6.563	8.919	5.034	9.498	5.397	4.301	7.879	6.820	8.357	11.265	6.156	8.177	4.287	1.049	2.681	3.652	2.743	3.298	16.223
969	chr1	183977500	183979057	+	0	NA	Intergenic	ORR1B2|LTR|ERVL-MaLR	55720	NM_028516	73363	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	2.084	0.533	0.695	2.210	0.611	0.866	4.902	1.944	1.179	1.551	0.553	0.649	8.759	5.758	3.939	3.824	6.387	2.036	0.600	1.207	1.490	0.518	0.849	1.217	2.193
14879	chr9	20369224	20371627	+	0	NA	intron (NM_001004190, intron 1 of 6)	MERVL-int|LTR|ERVL	14733	NM_001004190	434377	Mm.379669	NM_001004190	ENSMUSG00000045519	Zfp560	2310030G09Rik|Znf560	zinc finger protein 560	protein-coding	6.668	0.334	0.528	1.393	2.802	2.497	1.657	1.313	4.064	7.351	0.630	1.215	3.211	6.819	2.553	3.388	4.661	3.486	0.781	1.106	0.749	0.381	0.835	0.599	7.592
9477	chr3	89664504	89667806	+	0	NA	intron (NM_080466, intron 7 of 7)	intron (NM_080466, intron 7 of 7)	-48867	NM_001038587	56417	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	4.318	3.146	1.192	3.465	4.598	4.602	3.503	5.109	3.681	2.782	5.179	4.233	3.337	5.896	3.608	nan	3.141	3.359	nan	1.537	1.801	2.614	1.703	1.575	3.058
4207	chr13	60834105	60840607	+	0	NA	Intergenic	Lx3_Mus|LINE|L1	27060	NM_178098	214639	Mm.19839	NM_178098	ENSMUSG00000050345	4930486L24Rik	AW545031	RIKEN cDNA 4930486L24 gene	protein-coding	5.141	1.016	0.400	5.229	3.820	2.570	7.332	6.608	5.555	7.345	2.765	1.817	7.647	8.928	8.624	9.295	4.588	nan	2.857	1.802	1.508	2.650	4.417	3.063	8.356
4089	chr13	47308640	47314038	+	0	NA	Intergenic	Intergenic	117336	NM_001170643	218215	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	5.431	1.361	0.675	nan	6.613	3.435	2.456	6.317	3.389	3.347	3.886	2.720	2.711	4.327	3.184	3.933	2.597	4.765	0.652	nan	0.874	0.893	0.850	0.464	3.565
1501	chr10	80124927	80143364	+	0	NA	intron (NR_036582, intron 9 of 10)	ID_B1|SINE|B4	3242	NM_001195268	100503659	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	6.848	9.984	3.011	nan	4.562	3.207	4.704	7.856	5.474	7.359	6.990	3.536	5.935	9.164	nan	7.770	4.807	7.751	nan	2.625	2.760	7.125	2.778	2.366	9.495
4808	chr14	69070077	69080833	+	0	NA	Intergenic	B2_Mm2|SINE|B2	46166	NM_009285	20855	Mm.20911	NM_009285	ENSMUSG00000014813	Stc1	Stc	stanniocalcin 1	protein-coding	2.653	0.343	0.306	2.081	1.540	0.596	3.487	5.314	3.225	3.333	0.411	0.431	4.840	4.491	5.614	7.182	3.666	4.734	0.878	nan	0.324	0.873	1.384	0.672	2.490
15389	chr9	94436568	94439869	+	0	NA	Intergenic	Intergenic	99863	NM_001033145	68861	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	4.392	9.434	3.073	8.847	1.981	1.715	2.685	5.084	3.540	7.942	3.174	2.606	2.631	4.461	5.741	4.309	2.388	6.223	4.695	2.556	2.730	4.864	3.352	4.536	9.786
15308	chr9	75254831	75259377	+	0	NA	intron (NM_001081322, intron 9 of 40)	intron (NM_001081322, intron 9 of 40)	25090	NM_001081322	208943	Mm.41339	NM_001081322	ENSMUSG00000033590	Myo5c	9130003O20Rik|BB085560|C330029I24	myosin VC	protein-coding	7.641	9.906	3.177	8.884	4.072	2.323	5.213	5.652	6.069	9.316	7.144	4.285	5.342	8.466	7.342	8.522	4.287	8.410	4.015	nan	1.999	4.841	2.197	2.326	11.935
549	chr1	128498214	128503880	+	0	NA	Intergenic	L1Md_T|LINE|L1	-83631	NM_145507	226414	Mm.28693	NM_145507	ENSMUSG00000026356	Dars	5730439G15Rik	aspartyl-tRNA synthetase	protein-coding	4.590	nan	0.343	3.160	2.154	0.961	3.315	1.918	2.643	3.428	2.042	1.072	4.665	4.379	3.704	7.206	3.044	6.136	nan	0.524	0.317	0.654	0.978	0.566	4.979
13815	chr7	137978773	137980343	+	0	NA	Intergenic	Intergenic	418172	NM_183289	70571	Mm.334297	NM_183289	ENSMUSG00000091002	Tcerg1l	5730476P14Rik	transcription elongation regulator 1-like	protein-coding	2.152	nan	0.412	1.072	0.889	0.968	2.029	3.161	nan	1.340	2.978	1.213	1.716	1.053	1.959	1.794	2.316	1.906	4.833	2.509	3.053	3.283	6.490	6.018	1.659
13501	chr7	107679958	107683589	+	0	NA	exon (NM_008905, exon 4 of 25)	exon (NM_008905, exon 4 of 25)	74929	NM_001163557	19024	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	3.486	0.912	0.649	1.992	1.911	1.357	4.069	5.995	3.026	2.577	0.967	1.662	4.554	nan	4.692	nan	3.356	nan	nan	0.656	0.788	0.594	0.644	0.471	2.813
8002	chr2	22931177	22932184	+	0	NA	intron (NM_019501, intron 9 of 10)	intron (NM_019501, intron 9 of 10)	36158	NM_019501	56075	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	3.775	0.552	0.167	1.466	1.260	0.479	2.437	3.577	1.337	1.505	0.725	0.745	4.040	2.864	3.165	2.417	3.717	2.762	0.877	0.352		0.322	0.429	0.373	1.717
6127	chr16	52469532	52472163	+	0	NA	Intergenic	Intergenic	-17766	NM_001331110	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	4.938	1.995	0.817	2.945	1.800	0.608	1.596	2.920	2.726	3.251	5.257	2.813	3.969	2.911	3.357	2.949	2.604	4.317	1.121	1.224	0.621	0.536	0.684	0.416	1.514
8532	chr2	116759610	116763347	+	0	NA	Intergenic	Intergenic	-117213	NM_026104	67356	Mm.131623	NM_026104	ENSMUSG00000027355	Tmco5	1700095F04Rik|Tmco5a	transmembrane and coiled-coil domains 5	protein-coding	5.385	0.829	0.793	2.322	2.126	0.938	3.650	4.782	3.687	4.247	1.606	1.203	5.009	5.353	4.028	nan	6.026	4.704	0.775	1.016	0.783	0.821	0.840	0.555	nan
9049	chr2	168537169	168539495	+	0	NA	intron (NR_111898, intron 2 of 5)	RSINE1|SINE|B4	52033	NM_001291178	18019	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	4.131	0.850	0.928	1.080	2.659	1.628	4.445	4.887	1.945	2.090	1.067	1.210	3.874	nan	1.539	2.981	3.147	nan	6.164	5.152	5.673	7.908	7.458	5.553	nan
7018	chr18	11020769	11021831	+	0	NA	Intergenic	Lx6|LINE|L1	-31210	NM_010258	14465	Mm.329287	NM_010258	ENSMUSG00000005836	Gata6	AA410133|GATA-6	GATA binding protein 6	protein-coding	2.879	0.384	0.058	1.272	1.073	0.412	3.809	3.129	1.964	1.717	0.474	0.473	4.258	3.783	2.457	2.799	3.667	2.968	0.685	1.049	0.269	0.250	0.312	0.241	1.753
3930	chr13	31898547	31901016	+	0	NA	intron (NM_146041, intron 9 of 10)	intron (NM_146041, intron 9 of 10)	93135	NM_008592	17300	Mm.12949	NM_008592	ENSMUSG00000050295	Foxc1	FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda	forkhead box C1	protein-coding	1.194	1.776	0.441	2.904	0.618	0.698	0.576	0.729	1.597	4.002	6.613	6.527	0.406	1.133	1.153	1.258	0.645	1.266	4.300	1.460	3.863	8.556	4.138	9.149	2.318
8828	chr2	153247808	153265122	+	0	NA	intron (NM_080463, intron 4 of 6)	MIR|SINE|MIR	14933	NM_080463	140484	Mm.293761	NM_080463	ENSMUSG00000046020	Pofut1	O-FucT-1|mKIAA0180	protein O-fucosyltransferase 1	protein-coding	nan	1.094	0.467	3.734	1.384	0.802	5.091	7.753	nan	nan	0.987	1.343	nan	nan	4.890	5.702	3.212	nan	nan	0.993	0.706	1.609	0.845	0.724	nan
946	chr1	182448064	182450170	+	0	NA	exon (NM_173378, exon 13 of 18)	exon (NM_173378, exon 13 of 18)	39950	NM_173378	209456	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	1.547	13.874	9.301	1.197	0.197	0.174	0.396	0.359	0.447	0.361	0.239	0.244	0.340	nan	0.451	1.038	0.584	1.265	1.205	1.268	1.164	1.429	1.070	0.670	1.182
13569	chr7	117136515	117138317	+	0	NA	Intergenic	RLTR41B|LTR|ERV1	-243563	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	3.666	0.858	0.391	3.453	2.056	0.867	2.995	3.439	2.801	3.098	2.213	2.348	4.029	4.238	4.440	3.241	2.168	4.188	2.095	0.889	0.713	3.135	1.464	1.586	3.547
7230	chr18	50199946	50208067	+	0	NA	Intergenic	Intergenic	-74363	NM_001004061	225497	Mm.329435	NM_001004061	ENSMUSG00000035420	Fam170a	Gm93|Znfd	family with sequence similarity 170, member A	protein-coding	1.827	9.379	6.215	1.225	0.401	0.320	1.041	1.461	1.009	1.027	1.261	0.883	0.929	0.838	1.230	0.979	0.909	nan	0.595	0.553	0.489	0.431	0.392	0.308	2.211
12166	chr6	38290022	38296198	+	0	NA	exon (NM_172467, exon 4 of 4)	exon (NM_172467, exon 4 of 4)	6149	NM_172467	209032	Mm.101389	NM_172467	ENSMUSG00000047749	Zc3hav1l	B130055L09Rik|E430016P22Rik	zinc finger CCCH-type, antiviral 1-like	protein-coding	2.830	8.121	3.797	2.583	2.749	1.482	2.410	3.717	1.865	1.477	0.893	0.930	2.167	2.098	2.465	nan	3.024	nan	nan	3.109	2.286	nan	5.254	3.811	nan
1361	chr10	66388046	66393210	+	0	NA	Intergenic	L1MEg|LINE|L1	245332	NR_131070	77198	Mm.107617	NR_131070		4930407I19Rik	-	RIKEN cDNA 4930407I19 gene	ncRNA	5.372	1.097	1.117	2.693	6.953	4.991	4.220	3.473	4.075	4.405	2.977	3.103	4.460	4.714	3.263	3.719	3.970	nan	1.032	1.004	1.490	1.204	0.941	0.935	3.557
14305	chr8	73130790	73136360	+	0	NA	intron (NM_001317391, intron 3 of 15)	(CAAAA)n|Simple_repeat|Simple_repeat	117063	NR_039551	100628574		NR_039551	ENSMUSG00000093140	Mir28b	mmu-mir-28b	microRNA 28b	ncRNA	9.484	12.234	3.717	10.370	4.110	2.463	6.799	8.121	nan	9.730	6.387	3.538	8.687	8.900	8.972	10.177	6.807	8.078	3.208	2.616	2.822	5.161	2.301	2.685	14.414
11709	chr5	124496268	124502890	+	0	NA	intron (NM_021430, intron 6 of 6)	RSINE1|SINE|B4	16424	NM_029532	76167	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	4.183	2.828	1.583	3.070	4.546	2.965	5.018	6.891	3.519	3.268	10.034	6.269	2.748	4.114	nan	2.921	2.940	nan	nan	1.596	1.355	0.921	nan	1.224	nan
7020	chr18	11034684	11035807	+	0	NA	Intergenic	Tigger17c|DNA|TcMar-Tigger	-17265	NM_010258	14465	Mm.329287	NM_010258	ENSMUSG00000005836	Gata6	AA410133|GATA-6	GATA binding protein 6	protein-coding	3.562	0.658	0.782	1.644	3.219	2.238	7.804	4.448	2.422	2.664	0.359	1.033	5.942	4.414	4.541	5.768	5.646	5.120	0.623	0.485	0.218	0.814	0.691	1.136	3.881
15522	chr9	110432670	110436549	+	0	NA	intron (NM_177771, intron 7 of 9)	intron (NM_177771, intron 7 of 9)	14801	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	6.752	12.991	5.169	10.040	4.014	3.618	5.623	5.800	6.016	12.293	5.815	3.798	6.051	7.232	7.412	7.990	4.367	8.535	4.268	2.503	3.479	5.549	2.836	4.534	12.883
6737	chr17	53725238	53728018	+	0	NA	intron (NR_073205, intron 3 of 7)	intron (NR_073205, intron 3 of 7)	10119	NR_073205	211496	Mm.251553	NM_177599	ENSMUSG00000062036	4932415M13Rik	-	RIKEN cDNA 4932415M13 gene	ncRNA	6.204	4.034	1.748	4.618	3.945	1.794	5.553	5.198	2.863	3.074	2.826	1.860	3.180	5.651	5.281	4.693	4.392	4.165	1.092	1.505	0.709	1.596	0.933	0.604	6.585
3864	chr13	20254735	20256604	+	0	NA	intron (NM_080288, intron 6 of 21)	intron (NM_080288, intron 6 of 21)	165162	NM_080288	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	2.439	5.103	2.599	1.777	0.168	0.002	3.425	5.436	3.205	1.496	0.429	1.137	2.941	nan	2.223	5.201	3.052	2.674	0.851	0.744	0.540	1.810	0.692	0.258	5.448
12490	chr6	94164087	94166402	+	0	NA	intron (NR_130996, intron 1 of 1)	intron (NR_130996, intron 1 of 1)	72198	NR_130996	78178	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	3.398	0.568	0.359	2.662	2.920	2.010	5.025	5.352	2.798	3.752	0.921	1.054	4.157	7.920	4.998	6.649	4.214	3.578	nan	nan	0.636	0.594	0.654	0.330	4.141
15183	chr9	63592353	63599275	+	0	NA	intron (NM_001311098, intron 1 of 21)	intron (NM_001311098, intron 1 of 21)	6679	NM_030068	78250	Mm.444612	NM_030068	ENSMUSG00000037801	Iqch	4921504K03Rik	IQ motif containing H	protein-coding	3.136	1.368	0.753	2.939	2.503	1.589	3.683	6.637	3.583	3.460	3.212	3.223	3.790	5.011	nan	3.282	2.129	4.141	nan	1.030	1.043	1.485	0.934	0.923	4.854
12809	chr6	136865794	136869516	+	0	NA	Intergenic	RLTR20A4|LTR|ERVK	8168	NM_008597	17313	Mm.243085	NM_008597	ENSMUSG00000030218	Mgp	Mglap	matrix Gla protein	protein-coding	0.438	1.134	0.914	0.648	0.178		0.232	1.369	0.651	0.539	0.225	1.660	1.101	0.265	nan	0.448	0.759	0.776	nan	1.614	1.010	4.589	0.703	0.554	nan
5079	chr15	27395678	27398531	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-69573	NM_020332	11732	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	1.427	6.148	2.343	3.212	1.125	0.706	0.980	5.030	2.149	4.450	3.051	1.522	2.887	2.099	2.797	2.140	2.639	1.977	5.905	2.739	3.496	5.262	5.816	7.600	2.125
10302	chr4	98877905	98879154	+	0	NA	Intergenic	RLTR1B|LTR|ERV1	-45281	NM_001301414	230484	Mm.371692	NM_146144	ENSMUSG00000028560	Usp1	-	ubiquitin specific peptidase 1	protein-coding	4.858	nan	0.740	3.680	5.233	3.626	4.179	5.440	4.967	3.762	2.307	2.440	3.834	4.674	4.172	5.710	4.956	4.311	1.146	0.756	0.650	nan	0.712	0.601	4.051
3773	chr12	114165129	114173487	+	0	NA	Intergenic	MTA_Mm|LTR|ERVL-MaLR	300158	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	nan	0.863	0.359	2.330	0.512	0.458	1.030	1.449	1.019	2.828	1.792	0.840	0.747	1.352	1.947	nan	0.524	2.330	5.780	1.787	2.617	6.191	3.187	3.773	nan
5025	chr15	7523875	7525433	+	0	NA	Intergenic	Intergenic	-126259	NM_001289498	268780	Mm.203208	NM_178748	ENSMUSG00000042961	Egflam	5930412K08|AU040377	EGF-like, fibronectin type III and laminin G domains	protein-coding	5.910	0.628	0.631	3.264	4.756	1.874	2.883	2.474	3.800	3.924	0.978	0.717	4.965	4.182	2.776	3.134	3.961	5.781	0.811	0.978	0.653	0.455	0.786	0.380	3.106
10835	chr4	141626236	141628264	+	0	NA	intron (NM_001347237, intron 18 of 18)	B2_Mm2|SINE|B2	-3416	NM_001013780	384071	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	6.002	3.056	0.923	4.862	2.889	1.395	3.241	6.163	3.639	3.798	5.818	3.505	3.691	5.048	4.468	4.984	3.105	5.106	3.512	1.391	0.857	6.141	nan	0.762	7.140
11381	chr5	84843288	84846242	+	0	NA	Intergenic	Intergenic	-427383	NM_007937	13839	Mm.137991	NM_007937	ENSMUSG00000029245	Epha5	AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk	Eph receptor A5	protein-coding	0.127	0.437	0.175	0.373	0.194	0.178	0.529	0.622	0.299	0.261	0.139	0.100	0.056	0.213	0.306	0.274	0.315	0.266	0.828	5.108	2.456	5.281	0.766	0.729	0.380
11631	chr5	117803218	117815188	+	0	NA	Intergenic	Intergenic	-57636	NM_008712	18125	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	7.109	4.551	2.339	5.208	5.349	3.084	7.274	6.215	4.521	6.709	4.902	3.381	5.299	7.346	6.106	7.285	4.669	6.504	nan	nan	3.277	6.465	nan	3.887	6.810
1397	chr10	68767837	68769891	+	0	NA	intron (NM_177794, intron 4 of 5)	L1Md_F2|LINE|L1	45118	NM_177794	327766	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	3.201	1.037	0.423	1.977	2.047	1.010	3.305	2.469	1.406	1.488	0.743	0.522	3.348	4.440	3.408	4.043	3.056	2.979	0.465	0.323	0.283	0.811	0.422	0.432	3.419
12105	chr6	30248849	30255165	+	0	NA	intron (NM_009459, intron 3 of 6)	B1_Mur3|SINE|Alu	-8204	NM_001169577	22214	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	9.148	7.103	3.411	6.216	6.594	4.586	10.193	10.038	5.787	6.856	5.662	3.881	7.955	10.320	8.879	11.304	8.722	nan	nan	3.526	2.628	3.005	2.990	2.397	7.112
3678	chr12	103940978	103944048	+	0	NA	Intergenic	L1_Mm|LINE|L1	14384	NM_009247	20704	Mm.312593	NM_009247	ENSMUSG00000072849	Serpina1e	Dom5|PI5|Spi1-5	serine (or cysteine) peptidase inhibitor, clade A, member 1E	protein-coding	5.476	9.443	1.972	nan	2.967	1.757	3.805	5.510	nan	7.820	3.840	2.802	4.666	nan	6.250	6.835	4.527	6.132	4.880	1.892	2.526	6.276	2.996	2.760	12.149
11089	chr5	28641827	28645491	+	0	NA	intron (NR_015562, intron 2 of 6)	B3|SINE|B2	-176558	NM_009170	20423	Mm.57202	NM_009170	ENSMUSG00000002633	Shh	9530036O11Rik|Dsh|Hhg1|Hx|Hxl3|M100081	sonic hedgehog	protein-coding	5.944	10.430	3.316	nan	4.462	3.697	7.091	6.064	5.451	11.278	5.549	3.783	6.872	8.156	9.427	8.437	5.219	9.107	6.021	1.823	2.789	6.062	3.466	3.731	9.916
12422	chr6	88834593	88840210	+	0	NA	intron (NM_030251, intron 10 of 11)	intron (NM_030251, intron 10 of 11)	4534	NM_030251	80283	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0.596	0.906	0.406	nan	0.271	0.108	0.913	1.307	0.342	0.399	0.229	0.231	0.384	0.829	1.056	1.584	0.751	nan	nan	1.116	0.978	3.891	1.384	1.245	1.499
8539	chr2	117556359	117559064	+	0	NA	Intergenic	Intergenic	-214834	NM_011246	19419	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp	RAS guanyl releasing protein 1	protein-coding	4.879	0.492	0.193	1.952	3.181	1.462	6.546	2.459	2.157	2.556	3.945	1.535	6.008	7.603	3.881	5.217	4.784	4.683	0.824	0.757	0.120	0.664	0.288	0.769	2.766
6051	chr16	36530796	36533538	+	0	NA	intron (NM_013803, intron 1 of 6)	intron (NM_013803, intron 1 of 6)	29967	NM_013803	12374	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	nan	1.595	1.221	0.663	0.416	0.137	0.480	0.871	0.747	0.873	1.050	0.507	0.325	nan	0.549	nan	0.734	1.099	8.689	4.831	3.048	9.718	8.070	5.389	0.960
583	chr1	132358703	132361398	+	0	NA	intron (NM_001311107, intron 3 of 4)	intron (NM_001311107, intron 3 of 4)	7898	NM_001311108	68875	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	8.637	nan	1.229	6.478	2.349	2.028	3.720	5.303	4.342	5.779	3.415	1.801	7.151	7.574	6.529	12.539	7.268	6.350	nan	1.667	1.465	2.815	1.226	1.787	8.968
10317	chr4	101319349	101321815	+	0	NA	Intergenic	(CAAA)n|Simple_repeat|Simple_repeat	26445	NR_029537	387143		NR_029537	ENSMUSG00000065451	Mir101a	Mirn101|Mirn101a|miR-101|mir-101a	microRNA 101a	ncRNA	7.961	9.357	3.465	8.151	3.091	0.965	4.174	5.081	nan	7.157	5.039	2.710	4.221	6.404	nan	8.128	4.294	7.810	4.164	4.421	2.169	nan	3.316	2.470	9.215
7852	chr19	47581871	47591355	+	0	NA	intron (NM_009289, intron 1 of 18)	RSINE1|SINE|B4	6594	NM_001164639	20874	Mm.281011	NM_009289	ENSMUSG00000025060	Slk	9A2|AV021402|AW411554|Etk4|SMAK|Stk2|mKIAA0204|mSLK	STE20-like kinase	protein-coding	7.358	3.229	1.175	6.488	5.077	2.529	6.680	8.715	6.325	6.523	9.282	6.528	5.831	7.756	7.485	8.068	6.521	8.547	1.801	1.873	1.500	2.555	1.768	1.678	8.533
5063	chr15	12360970	12364430	+	0	NA	intron (NM_001081064, intron 23 of 23)	intron (NM_001081064, intron 23 of 23)	41204	NM_025673	66629	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	1.714	1.491	1.172	1.582	0.876	0.641	0.948	1.665	0.968	1.112	6.198	2.983	0.433	0.781	0.806	1.067	1.339	1.205	1.504	1.771	1.186	1.524	1.134	1.022	0.996
8602	chr2	120994877	120998419	+	0	NA	intron (NM_175285, intron 10 of 13)	intron (NM_175285, intron 10 of 13)	-11760	NM_010761	17151	Mm.7838	NM_010761	ENSMUSG00000023572	Ccndbp1	AU022347|DIP1|GCIP|Maid|SECC-8|SSEC-8	cyclin D-type binding-protein 1	protein-coding	8.268	10.871	3.285	8.842	2.933	1.388	5.690	8.809	4.742	7.856	5.710	3.143	6.651	8.221	7.621	10.628	7.687	8.388	5.860	3.956	2.392	5.590	5.463	3.945	nan
7535	chr19	9015925	9019820	+	0	NA	promoter-TSS (NR_105786)	promoter-TSS (NR_105786)	-32	NR_105786	102465190		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	9.150	9.595	4.227	8.627	7.562	6.334	8.322	9.500	5.917	10.185	8.603	6.988	6.123	10.778	7.510	7.544	6.795	7.521	3.165	4.480	4.458	4.392	4.593	4.866	13.424
8946	chr2	163445560	163447161	+	0	NA	intron (NM_144891, intron 2 of 5)	intron (NM_144891, intron 2 of 5)	7893	NM_144891	228858	Mm.102080	NM_144891	ENSMUSG00000017943	Gdap1l1	Gdap1l	ganglioside-induced differentiation-associated protein 1-like 1	protein-coding	5.274	1.733	1.080	2.836	3.882	2.215	4.064	8.322	3.791	4.015	2.307	1.252	6.714	5.495	6.360	7.050	6.740	5.896	1.618	0.655	0.959	2.156	0.866	0.905	4.701
8817	chr2	152582096	152594431	+	0	NA	Intergenic	Intergenic	-7951	NM_145157	246700	Mm.82820	NM_145157	ENSMUSG00000050645	Defb19	BD-19|Defb24|Tdl|mBD-19	defensin beta 19	protein-coding	6.508	1.602	1.227	3.355	3.829	3.046	9.032	7.315	4.528	5.811	1.353	1.384	6.280	7.421	6.234	8.397	7.562	6.386	nan	1.208	1.049	1.258	1.083	0.926	9.959
591	chr1	132774627	132776556	+	0	NA	Intergenic	Intergenic	-33794	NM_001160317	269116	Mm.326702	NM_182716	ENSMUSG00000026442	Nfasc	AA387016|D430023G06Rik|NF|mKIAA0756	neurofascin	protein-coding	0.985	nan	1.239	0.825	1.333	0.503	0.756	1.251	0.674	1.579	5.071	1.374	0.868	0.859	1.504	1.494	0.910	nan	nan	1.009	0.635	1.841	1.219	1.145	1.700
15170	chr9	62623027	62627068	+	0	NA	Intergenic	Intergenic	-52808	NM_176922	319480	Mm.34883	NM_176922	ENSMUSG00000032243	Itga11	4732459H24Rik	integrin alpha 11	protein-coding	2.725	0.643	0.540	2.171	2.784	1.765	2.747	nan	2.614	2.910	0.814	0.866	3.520	4.526	3.000	3.436	2.486	2.852	0.667	0.706	0.824	0.802	0.606	0.640	5.310
13692	chr7	125866476	125868901	+	0	NA	intron (NM_001081022, intron 22 of 27)	intron (NM_001081022, intron 22 of 27)	159812	NM_001081022	233865	Mm.274389	NM_001081022	ENSMUSG00000032743	D430042O09Rik	Kiaa0556	RIKEN cDNA D430042O09 gene	protein-coding	2.856	0.826	0.594	2.580	2.825	1.941	4.033	2.038	3.661	4.879	0.464	0.759	6.977	5.594	3.576	4.536	5.860	3.854	1.821	0.745	0.910	2.017	1.022	0.958	3.311
8808	chr2	152118964	152121182	+	0	NA	Intergenic	Intergenic	14549	NM_029688	76650	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	7.180	7.367	2.087	7.422	4.859	2.611	5.345	8.682	4.676	8.473	5.103	2.424	6.131	7.108	5.778	9.103	6.047	7.135	nan	2.985	1.781	4.952	3.248	2.960	9.687
2304	chr11	61958844	61962555	+	0	NA	intron (NM_001310526, intron 1 of 7)	L1MB2|LINE|L1	3936	NM_001310526	432572	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	3.773	0.718	0.354	4.939	5.002	2.851	0.997	1.014	3.516	3.629	1.729	0.877	2.942	5.620	3.296	4.046	2.108	5.965	nan	0.654	0.458	0.770	0.476	0.357	nan
6571	chr17	34762776	34785028	+	0	NA	Intergenic	Intergenic	-30005	NM_009780	12268	Mm.477109	NM_009780	ENSMUSG00000073418	C4b	C4|Ss	complement component 4B (Chido blood group)	protein-coding	nan	3.520	1.719	3.247	2.617	1.590	6.135	5.478	1.951	2.690	2.007	1.482	3.915	6.637	5.376	5.484	4.239	3.350	1.758	1.987	1.592	2.338	2.292	2.095	5.574
3846	chr13	13561449	13563818	+	0	NA	Intergenic	Intergenic	-27776	NM_010748	17101	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	1.226	0.903	1.023	0.756	1.154	1.424	1.037	1.292	0.584	0.592	0.780	0.674	0.673	nan	1.173	0.751	nan	0.629	2.936	2.452	2.644	3.212	4.548	5.746	nan
2804	chr11	101107341	101109523	+	0	NA	intron (NM_028933, intron 1 of 7)	RSINE1|SINE|B4	11392	NM_026501	67998	Mm.33881	NM_026501	ENSMUSG00000017802	Fam134c	1300010M03Rik|4933404C01Rik|AI551748	family with sequence similarity 134, member C	protein-coding	4.836	2.413	0.743	10.015	1.687	0.394	1.460	1.901	2.621	4.964	1.688	0.836	1.320	3.053	3.092	4.543	1.775	5.393	1.331	nan	2.325	2.257	nan	nan	5.778
2341	chr11	67758131	67762023	+	0	NA	intron (NM_175681, intron 3 of 12)	intron (NM_175681, intron 3 of 12)	11076	NM_175681	93896	Mm.118883	NM_175681	ENSMUSG00000049928	Glp2r	9530092J08Rik|GLP-2	glucagon-like peptide 2 receptor	protein-coding	4.377	0.500	0.560	1.934	3.422	2.918	4.573	2.174	2.349	2.890	0.386	0.392	2.916	5.542	4.126	3.810	2.037	3.875	0.625	0.719	0.986	0.647	nan	0.648	nan
13064	chr7	29550451	29552588	+	0	NA	Intergenic	RLTR19-int|LTR|ERVK	-46059	NM_001081028	74206	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	6.115	8.899	3.844	6.916	5.227	2.900	4.283	6.622	3.311	5.754	3.399	2.385	3.956	6.170	5.212	6.256	3.482	5.855	3.303	3.116	2.102	2.841	3.890	2.201	7.433
12264	chr6	56664310	56666534	+	0	NA	Intergenic	Lx5|LINE|L1	39277	NM_025520	66373	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	6.468	7.318	2.131	7.096	3.324	1.799	7.190	8.457	4.834	9.200	4.686	3.044	8.833	7.907	8.940	10.430	7.487	6.589	nan	2.203	2.472	4.345	2.636	2.758	9.411
4078	chr13	46847291	46848795	+	0	NA	intron (NM_010617, intron 4 of 37)	B1F1|SINE|Alu	81675	NM_010617	16553	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	3.626	0.938	0.343	5.800	1.605	0.865	1.471	4.617	2.726	2.814	0.601	0.661	3.854	3.907	3.100	4.707	1.926	5.831	0.544	nan	0.252	0.757	0.459	0.327	5.869
5123	chr15	37121732	37123914	+	0	NA	Intergenic	Intergenic	-110213	NM_026496	252973	Mm.244612	NM_026496	ENSMUSG00000022286	Grhl2	0610015A08Rik|BOM|Tcfcp2l3|clft3	grainyhead-like 2 (Drosophila)	protein-coding	1.925	0.811	0.626	1.140	1.874	2.117	1.427	6.121	1.715	1.479	8.838	4.306	2.082	2.269	1.580	1.498	1.987	2.683	1.246	1.358	1.097	2.095	1.340	1.246	nan
14855	chr9	13300097	13302118	+	0	NA	Intergenic	Intergenic	54151	NM_025534	66396	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	4.710	1.804	0.661	3.782	5.076	2.585	2.568	4.341	3.797	2.859	5.966	4.833	2.668	4.083	2.326	3.969	1.995	3.356	1.121	1.133	0.713	0.833	0.656	0.514	2.446
12410	chr6	87570436	87571992	+	0	NA	Intergenic	Intergenic	19487	NM_021381	58182	Mm.333226	NM_021381	ENSMUSG00000049409	Prokr1	EG-VEGFR1|Gpr73|Pkr1	prokineticin receptor 1	protein-coding	3.125	1.331	0.407	nan	0.852	0.323	3.142	0.886	2.226	3.148	1.815	0.633	4.209	4.044	4.205	4.785	1.925	nan	nan	0.407	0.236	1.399	0.161	0.060	4.903
6467	chr17	28147214	28148805	+	0	NA	intron (NM_001004366, intron 1 of 21)	intron (NM_001004366, intron 1 of 21)	5483	NM_001004366	268935	Mm.258491	NM_001004366	ENSMUSG00000038677	Scube3	CEGF3|D030038I21Rik	signal peptide, CUB domain, EGF-like 3	protein-coding	3.379	1.010	0.450	5.423	1.448	0.405	2.778	2.201	2.841	2.958	2.325	1.003	3.124	3.995	2.443	3.307	2.402	4.186	0.663	0.953	0.386	0.532	0.539	0.368	5.539
4990	chr14	122172870	122181016	+	0	NA	Intergenic	Intergenic	-4751	NM_029556	69634	Mm.34608	NM_029556	ENSMUSG00000025545	Clybl	0610033J05Rik|2310014M14Rik|AI256068|Clb	citrate lyase beta like	protein-coding	4.415	1.957	0.780	4.561	2.059	1.125	3.316	4.385	4.831	5.147	1.285	1.394	4.822	5.424	5.944	8.296	4.425	5.947	1.384	1.230	0.938	1.531	1.387	1.265	6.693
1920	chr11	4747646	4750286	+	0	NA	Intergenic	Intergenic	-2188	NM_138948	192650	Mm.207056	NM_138948	ENSMUSG00000009075	Cabp7	-	calcium binding protein 7	protein-coding	4.857	7.384	3.158	5.985	3.600	2.525	3.331	4.850	4.038	6.347	5.538	4.356	3.409	4.951	4.922	5.068	3.833	5.371	3.582	nan	1.877	3.323	2.103	2.651	6.720
11656	chr5	121911882	121914870	+	0	NA	intron (NM_001312908, intron 4 of 22)	B4|SINE|B4	64348	NM_175474	231717	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	6.745	0.774	0.536	4.338	8.168	5.867	5.451	5.809	5.224	6.428	1.799	1.789	5.918	10.906	5.844	5.226	6.706	6.024	nan	nan	0.721	0.525	nan	0.782	5.165
10947	chr4	150825789	150830640	+	0	NA	TTS (NR_040649)	TTS (NR_040649)	26735	NR_040649	73348	Mm.396218	NR_040649	ENSMUSG00000078492	1700045H11Rik	-	RIKEN cDNA 1700045H11 gene	ncRNA	0.372	nan	0.192	0.495	0.158	0.069	0.138	0.189	0.245	0.147	0.208	0.314	0.085	0.085	0.129	0.464	0.170	0.384	6.001	1.311	0.859	6.740	2.232	1.177	0.389
3827	chr13	5839219	5845887	+	0	NA	Intergenic	Intergenic	15539	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	6.860	2.202	1.214	7.521	7.786	4.319	3.520	6.700	7.177	5.758	7.212	5.468	5.324	7.918	5.449	4.846	2.513	9.343	1.707	0.956	0.619	1.739	1.192	0.832	3.955
11891	chr5	140728225	140733804	+	0	NA	intron (NM_173405, intron 2 of 7)	intron (NM_173405, intron 2 of 7)	6887	NM_173405	231842	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.990	1.312	0.518	1.613	0.944	0.288	1.169	1.184	1.566	1.138	2.732	2.676	0.783	1.364	1.562	1.208	0.680	1.376	4.999	2.326	1.418	5.497	nan	2.497	1.249
5157	chr15	41441700	41446352	+	0	NA	Intergenic	Intergenic	-3456	NM_001130166	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	2.404	1.996	1.158	1.472	1.242	0.547	4.145	6.577	3.173	1.611	2.695	4.781	4.472	2.358	3.432	1.882	1.666	2.498	2.108	0.962	0.470	nan	0.678	0.623	nan
4589	chr14	32594264	32595400	+	0	NA	Intergenic	Intergenic	-4576	NM_001347590	107751	Mm.119274	NM_001001796	ENSMUSG00000041730	Prrxl1	Drg11|Drgx	paired related homeobox protein-like 1	protein-coding	5.581	3.009	1.834	4.200	3.365	0.863	3.222	3.906	4.009	4.801	3.513	2.785	3.876	4.424	4.318	4.617	2.311	4.196	2.248	1.372	1.291	nan	1.121	0.563	3.613
2992	chr11	115920397	115923096	+	0	NA	intron (NM_130454, intron 6 of 18)	intron (NM_130454, intron 6 of 18)	9729	NM_001162998	68528	Mm.441893	NM_001162998	ENSMUSG00000075420	Smim6	1110017F19Rik	small integral membrane protein 6	protein-coding	3.524	nan	0.522	4.439	1.764	1.362	nan	nan	3.386	3.908	1.139	1.853	3.496	7.005	4.833	5.796	3.854	6.008	0.342	nan	0.182	1.132	0.194	0.272	6.290
4942	chr14	106136652	106146112	+	0	NA	Intergenic	ORR1D1|LTR|ERVL-MaLR	35184	NR_073203	212085	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding	3.629	0.662	0.386	3.783	2.844	1.223	3.245	2.463	5.608	7.090	1.602	1.173	4.236	6.009	4.509	6.926	2.745	6.207	1.022	0.757	0.347	1.045	0.603	0.366	3.363
2639	chr11	93827990	93830587	+	0	NA	Intergenic	Intergenic	56478	NM_001013375	217109	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	5.711	6.031	3.221	3.907	4.456	2.583	4.562	4.315	3.916	4.131	3.813	2.649	3.179	4.948	4.205	6.210	5.305	5.262	4.722	nan	3.342	4.118	nan	nan	4.055
4409	chr13	111350637	111351847	+	0	NA	Intergenic	RLTR20B3|LTR|ERVK	96229	NM_175497	238880	Mm.107293	NM_175497	ENSMUSG00000055194	Actbl2	4732495G21Rik	actin, beta-like 2	protein-coding	5.245	1.627	1.046	6.870	2.585	0.877	3.133	2.943	5.173	4.571	4.524	2.349	3.490	2.695	4.718	7.269	1.890	5.580	0.818	1.117	0.370	nan	0.304	0.517	5.233
14719	chr8	124803788	124809490	+	0	NA	intron (NM_198632, intron 1 of 9)	intron (NM_198632, intron 1 of 9)	13620	NM_198632	330863	Mm.422769	NM_198632	ENSMUSG00000036913	Trim67	D130049O21Rik|TNL	tripartite motif-containing 67	protein-coding	6.300	13.325	4.187	6.186	2.623	1.630	5.666	7.946	2.989	6.863	2.215	1.760	5.512	7.124	7.083	7.396	6.381	nan	nan	2.135	2.491	5.590	1.978	nan	13.202
12499	chr6	94607378	94608894	+	0	NA	exon (NM_008377, exon 16 of 19)	exon (NM_008377, exon 16 of 19)	-1721	NR_106008	102466992		NR_106008	ENSMUSG00000098531	Mir7041	Gm27872|mmu-mir-7041	microRNA 7041	ncRNA	1.697	0.925	0.424	1.308	0.332	0.080	5.681	4.608	1.613	1.375	1.720	2.628	3.311	4.533	4.802	2.381	1.405	2.599	nan	nan	0.531	2.825	0.912	0.357	0.985
11784	chr5	135421266	135428311	+	0	NA	intron (NM_146001, intron 24 of 30)	intron (NM_146001, intron 24 of 30)	-30242	NM_148932	107939	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	3.602	0.899	0.555	4.637	5.699	4.117	6.446	6.745	2.070	2.453	5.332	4.553	3.069	5.539	5.717	5.514	3.807	4.815	5.144	3.270	3.278	3.629	6.310	6.036	3.738
12618	chr6	115428012	115431871	+	0	NA	intron (NM_011146, intron 1 of 6)	intron (NM_011146, intron 1 of 6)	7875	NM_011146	19016	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	6.838	1.469	0.776	3.372	2.680	1.139	10.793	10.390	4.712	4.828	2.119	2.956	7.983	9.518	8.530	10.471	8.136	6.551	2.745	1.165	0.798	0.970	nan	1.109	6.484
1625	chr10	94290906	94293059	+	0	NA	Intergenic	MTB_Mm|LTR|ERVL-MaLR	6721	NR_033209	215472	Mm.255656	NM_174999	ENSMUSG00000053420	Gm4792	E130012K09|EG215472	predicted gene 4792	ncRNA	6.672	16.676	5.818	6.247	3.022	1.091	3.716	3.433	3.467	4.795	nan	1.632	4.710	5.047	5.371	6.484	3.818	6.728	nan	2.022	1.427	3.856	1.349	0.707	8.383
163	chr1	51934432	51936358	+	0	NA	Intergenic	Intergenic	-19417	NM_001161817	17912	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	3.867	1.050	0.467	3.754	1.943	0.677	1.298	1.985	3.578	3.842	1.068	1.172	4.834	4.436	2.998	7.214	4.344	4.338	nan	0.843	0.361	0.747	0.629	0.484	3.243
13148	chr7	50926261	50928532	+	0	NA	Intergenic	RMER17C-int|LTR|ERVK	328206	NM_172901	243996	Mm.443270	NM_172901	ENSMUSG00000084234	4933405O20Rik	-	RIKEN cDNA 4933405O20 gene	protein-coding	9.034	5.849	2.629	6.133	5.310	3.101	6.559	7.179	5.057	5.658	5.416	3.469	6.596	7.699	6.888	8.204	7.442	7.547	3.920	5.026	2.914	3.541	5.187	3.251	9.698
4070	chr13	46053643	46062389	+	0	NA	Intergenic	Intergenic	-93025	NM_009124	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	8.434	4.273	1.317	6.918	6.532	4.398	6.385	6.928	4.483	9.547	5.854	2.694	6.459	10.632	7.201	8.399	5.309	nan	4.044	nan	2.360	2.876	2.970	3.153	nan
3898	chr13	24656973	24659126	+	0	NA	intron (NM_029679, intron 1 of 22)	L1Md_A|LINE|L1	19401	NM_029679	193385	Mm.217319	NM_029679	ENSMUSG00000036006	Fam65b	-	family with sequence similarity 65, member B	protein-coding	6.256	1.967	0.741	3.566	2.676	1.546	3.792	4.037	4.252	2.481	3.438	2.001	3.984	4.735	4.153	5.444	2.230	6.993	0.793	0.766	0.385	0.881	0.410	0.313	6.279
1106	chr10	13702175	13707061	+	0	NA	intron (NM_001347362, intron 3 of 5)	intron (NM_001347362, intron 3 of 5)	-151476	NM_001347361	56535	Mm.282711	NM_019961	ENSMUSG00000019809	Pex3	1700014F15Rik|2810027F19Rik|2900010N04Rik	peroxisomal biogenesis factor 3	protein-coding	7.325	5.150	2.731	5.233	4.743	3.712	2.977	3.689	nan	5.605	3.803	3.079	3.417	nan	4.297	6.216	3.678	5.045	2.673	1.370	1.622	2.868	1.886	2.001	5.253
10356	chr4	106915951	106922800	+	0	NA	intron (NM_023672, intron 4 of 17)	intron (NM_023672, intron 4 of 17)	7905	NM_023672	72475	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	3.902	1.248	0.705	2.636	2.148	1.440	2.898	4.220	2.979	3.084	0.621	0.935	4.222	3.318	3.169	4.215	4.018	4.698	4.475	3.521	3.682	5.408	4.411	4.399	3.419
14058	chr8	15026175	15028631	+	0	NA	exon (NM_029116, exon 2 of 2)	exon (NM_029116, exon 2 of 2)	16378	NM_029116	74901	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	6.177	10.957	2.108	5.473	0.953	0.254	4.376	7.224	4.055	10.146	0.921	2.981	7.222	5.586	7.516	8.731	5.339	8.488	1.142	0.869	1.366	3.953	1.067	2.312	16.207
12594	chr6	113588469	113596037	+	0	NA	intron (NM_001347350, intron 41 of 42)	intron (NM_001347350, intron 41 of 42)	8462	NM_027633	70979	Mm.72959	NM_027633	ENSMUSG00000033963	Fancd2os	4931417G12Rik	Fancd2 opposite strand	protein-coding	5.958	3.898	2.147	6.355	6.782	5.741	4.007	6.837	4.871	5.073	3.108	3.281	4.040	6.430	4.487	6.218	4.807	4.726	1.145	1.812	2.061	1.086	nan	1.311	4.847
12322	chr6	72337854	72346911	+	0	NA	intron (NM_138592, intron 2 of 12)	B1_Mus2|SINE|Alu	2793	NM_138592	28035	Mm.281900	NM_138592	ENSMUSG00000056305	Usp39	AA408960|AI894154|CGI-21|D6Wsu157e|SAD1	ubiquitin specific peptidase 39	protein-coding	9.160	5.101	2.230	7.226	5.858	3.828	9.723	9.313	5.593	7.815	5.275	2.924	8.962	13.022	7.142	9.128	8.994	7.717	2.174	2.162	1.849	2.206	1.824	1.646	8.327
1531	chr10	81020042	81024122	+	0	NA	exon (NM_145217, exon 2 of 2)	exon (NM_145217, exon 2 of 2)	3295	NM_145217	208666	Mm.44995	NM_145217	ENSMUSG00000043670	Diras1	Di-Ras1|Gbts1|RIG	DIRAS family, GTP-binding RAS-like 1	protein-coding	11.290	7.956	4.242	nan	7.036	5.017	8.960	7.896	3.793	8.679	5.314	3.229	4.817	9.305	nan	6.716	7.901	5.098	nan	5.623	6.874	5.210	7.794	7.958	11.564
10772	chr4	138296422	138307837	+	0	NA	TTS (NM_001190978)	TTS (NM_001190978)	-2609	NM_007838	13200	Mm.7236	NM_007838	ENSMUSG00000028757	Ddost	-	dolichyl-di-phosphooligosaccharide-protein glycotransferase	protein-coding	nan	0.688	0.239	0.559	0.189	0.073	0.764	0.972	nan	0.710	0.864	0.762	0.745	0.632	0.861	0.956	0.415	nan	4.762	2.202	1.333	7.346	nan	1.516	1.000
2731	chr11	97659998	97684934	+	0	NA	exon (NM_139311, exon 9 of 20)	exon (NM_139311, exon 9 of 20)	-4594	NR_105892	102465559		NR_105892	ENSMUSG00000098881	Mir6927	Gm27662|mmu-mir-6927	microRNA 6927	ncRNA	6.402	nan	1.375	6.763	5.368	3.293	7.282	7.536	4.486	5.615	4.975	3.527	5.754	8.304	6.740	7.048	nan	6.835	4.973	nan	3.050	5.378	nan	nan	7.236
5640	chr15	99269499	99271703	+	0	NA	TTS (NM_001081254)	TTS (NM_001081254)	16579	NM_001081254	545136	Mm.324745	NM_001081254	ENSMUSG00000078907	Fam186b	EG545136	family with sequence similarity 186, member B	protein-coding	5.114	1.291	0.723	2.287	2.815	2.632	5.660	7.738	2.126	1.899	1.193	2.112	3.347	4.033	4.539	3.790	3.954	2.446	1.502	1.702	2.441	1.254	1.369	2.034	2.846
11825	chr5	136938822	136945869	+	0	NA	Intergenic	ORR1D2|LTR|ERVL-MaLR	-10930	NM_001163243	66437	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	3.775	2.671	0.933	3.736	3.807	1.885	3.078	4.495	3.639	4.107	2.726	1.537	3.939	7.092	5.113	4.539	2.849	4.955	1.029	1.318	0.744	2.463	nan	0.570	3.630
8838	chr2	153941962	153944308	+	0	NA	intron (NM_001034875, intron 3 of 15)	intron (NM_001034875, intron 3 of 15)	2273	NM_001034875	381399	Mm.315572	NM_001034875	ENSMUSG00000074665	Bpifb4	Gm1006|Lplunc4	BPI fold containing family B, member 4	protein-coding	6.623	0.471	0.218	2.786	0.962	0.107	3.167	7.255	3.539	3.682	0.393	0.392	6.707	4.087	4.472	10.171	10.103	4.408	nan	0.756	0.157	0.323	0.541	0.282	4.791
12053	chr6	13023195	13024559	+	0	NA	Intergenic	Intergenic	-45882	NM_027992	71900	Mm.27742	NM_027992	ENSMUSG00000029571	Tmem106b	2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344	transmembrane protein 106B	protein-coding	2.026	nan	0.931	1.708	3.184	2.419	1.404	3.758	2.390	1.577	2.017	1.436	1.637	3.821	1.911	nan	1.577	2.396	0.682	0.854	0.365	0.823	0.731	0.450	1.308
14627	chr8	116191133	116194260	+	0	NA	Intergenic	Intergenic	-312319	NM_029297	75465	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	2.387	0.379	0.455	0.361	0.306	0.236	1.575	0.731	0.369	0.525	0.213	0.293	0.864	1.088	1.806	nan	2.212	0.725	0.581	0.473	0.862	0.692	0.481	0.305	4.476
9251	chr3	38174176	38177012	+	0	NA	Intergenic	Intergenic	32525	NR_040541	71342	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	1.976	0.961	0.466	0.818	0.695	0.303	2.946	3.330	2.218	1.545	6.497	4.095	1.987	2.539	1.702	0.867	0.940	1.424	nan	0.810	0.749	2.799	0.959	0.770	1.040
1333	chr10	59623804	59634710	+	0	NA	Intergenic	Intergenic	-12565	NM_001033259	215999	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	0.453	12.213	6.042	0.758	0.286	0.191	0.244	0.212	0.488	0.432	0.999	0.716	0.203	0.228	0.509	0.572	0.501	0.480	nan	1.091	0.787	0.711	0.384	0.415	nan
8022	chr2	25337384	25344706	+	0	NA	intron (NM_001029983, intron 4 of 12)	intron (NM_001029983, intron 4 of 12)	8302	NM_001029983	227619	Mm.270798	NM_001029983	ENSMUSG00000036646	Man1b1	E430019H13Rik|ERMan1|Gm108|MANA-ER	mannosidase, alpha, class 1B, member 1	protein-coding	0.416	0.734	0.544	0.472	0.403	0.104	0.434	0.850	nan	0.441	0.623	0.484	0.308	0.330	0.603	0.859	0.519	0.715	0.814	0.996	0.972	4.545	0.276	0.292	0.861
14439	chr8	89411620	89413533	+	0	NA	Intergenic	Intergenic	-368414	NM_021390	58198	Mm.214361	NM_021390	ENSMUSG00000031665	Sall1	Msal-3	sal-like 1 (Drosophila)	protein-coding	5.609	3.420	1.201	5.757	2.440	2.843	2.942	7.740	nan	3.422	6.622	4.297	4.376	4.038	3.927	4.939	2.523	5.169	nan	1.089	1.452	1.198	1.163	0.760	3.705
12528	chr6	99041249	99052238	+	0	NA	intron (NM_001347345, intron 6 of 19)	intron (NM_001347345, intron 6 of 19)	-18445	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	5.334	4.934	2.790	4.985	4.685	2.646	7.543	7.822	5.819	7.143	5.625	3.775	8.479	9.673	nan	9.002	7.188	7.210	nan	nan	1.609	2.938	2.948	1.693	4.623
7478	chr19	4260759	4261903	+	0	NA	TTS (NM_198113)	TTS (NM_198113)	2547	NR_105951	102465595		NR_105951	ENSMUSG00000099290	Mir6985	Gm27719|mmu-mir-6985	microRNA 6985	ncRNA	3.893	2.792	2.289	1.423	1.248	1.805	5.237	5.675	1.877	1.275	0.862	2.104	2.157	3.557	3.967	2.678	3.364	2.065	3.816	2.839	2.973	4.427	7.360	8.151	3.932
2770	chr11	100144192	100157732	+	0	NA	Intergenic	Intergenic	-5036	NM_008471	16669	Mm.439699	NM_008471	ENSMUSG00000020911	Krt19	AI663979|CK-19|EndoC|K19|Krt-1.19|Krt1-19	keratin 19	protein-coding	2.776	nan	0.518	4.715	5.237	2.934	3.901	4.454	3.829	4.273	14.707	7.684	3.238	5.504	4.375	5.973	nan	5.691	0.941	nan	0.841	0.936	nan	nan	5.092
3859	chr13	19480328	19488440	+	0	NA	intron (NR_131037, intron 2 of 4)	intron (NR_131037, intron 2 of 4)	19983	NR_131038	319466		NR_131037		9330199G10Rik	-	RIKEN cDNA 9330199G10 gene	ncRNA	4.735	2.759	1.002	5.148	2.855	1.749	3.355	4.596	5.211	6.015	1.984	1.461	4.896	6.281	4.811	7.207	5.233	6.756	2.020	1.156	0.869	2.271	1.614	0.940	nan
7775	chr19	42007127	42008465	+	0	NA	intron (NM_145500, intron 1 of 2)	RLTR11A|LTR|ERVK	26033	NM_145500	226122	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	6.118	12.143	3.186	5.740	1.790	1.239	5.433	nan	4.046	5.254	4.054	3.558	3.218	6.227	5.528	7.521	nan	5.303	2.342	2.318	2.382	3.711	2.734	2.207	11.689
7288	chr18	60818703	60830679	+	0	NA	intron (NM_011552, intron 16 of 24)	intron (NM_011552, intron 16 of 24)	12615	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	5.566	nan	0.789	nan	6.180	4.176	4.407	4.981	5.567	6.680	5.295	4.192	6.149	5.336	4.515	4.798	3.721	nan	nan	1.305	1.144	nan	1.676	1.412	nan
6165	chr16	84794467	84796427	+	0	NA	intron (NM_023844, intron 1 of 9)	intron (NM_023844, intron 1 of 9)	21324	NM_023844	67374	Mm.41758	NM_023844	ENSMUSG00000053062	Jam2	1110002N23Rik|2410030G21Rik|2410167M24Rik|JAM-2|JAM-B|Jcam2|VE-JAM	junction adhesion molecule 2	protein-coding	5.239	nan	0.831	0.993	2.086	1.872	1.413	0.970	1.121	1.172	0.741	0.259	1.481	3.107	0.752	1.246	1.303	nan	0.346	0.556	0.657	nan	0.578	0.228	4.078
8656	chr2	128571001	128574271	+	0	NA	Intergenic	PB1D10|SINE|Alu	-19705	NM_001310641	241634	Mm.297682	NM_001310641	ENSMUSG00000074812	Spdye4c	Gm355|SpeedyB3|SpyB3	speedy/RINGO cell cycle regulator family, member E4C	protein-coding	6.410	1.654	0.645	5.078	2.732	1.597	1.896	2.622	2.474	2.634	1.310	0.549	1.511	3.658	1.840	nan	2.114	3.113	nan	0.875	0.801	0.722	0.570	0.471	2.666
4492	chr14	19164059	19164924	+	0	NA	Intergenic	Intergenic	-270864	NM_144839	218793	Mm.23551	NM_144839	ENSMUSG00000058317	Ube2e2	BC016265	ubiquitin-conjugating enzyme E2E 2	protein-coding	5.927	9.061	2.685	7.920	4.700	2.871	6.749	8.757	3.740	13.931	4.369	5.060	3.786	6.611	7.183	6.782	4.338	6.974	5.500	3.782	7.533	6.516	6.257	11.259	15.087
2156	chr11	51075671	51078857	+	0	NA	Intergenic	Intergenic	-7823	NR_045865	619293	Mm.387061	NM_001033798	ENSMUSG00000072982	9230009I02Rik	-	RIKEN cDNA 9230009I02 gene	ncRNA	11.666	12.703	5.309	10.293	8.499	6.638	8.338	9.269	7.645	10.753	6.874	4.069	8.986	12.242	9.481	11.543	7.674	8.800	6.134	4.365	5.321	6.743	nan	5.311	12.133
1577	chr10	87866468	87877766	+	0	NA	intron (NM_001314010, intron 3 of 4)	intron (NM_001314010, intron 3 of 4)	11006	NM_001111276	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	nan	9.952	6.756	1.143	1.713	1.139	0.805	1.304	1.239	1.125	1.343	0.821	0.711	nan	1.034	1.280	1.242	nan	0.671	0.776	0.781	nan	nan	0.471	1.121
7511	chr19	6994034	6997349	+	0	NA	promoter-TSS (NM_153597)	promoter-TSS (NM_153597)	346	NM_026675	68323	Mm.49041	NM_026675	ENSMUSG00000037349	Nudt22	0610006K04Rik|AI851793|AW545547	nudix (nucleoside diphosphate linked moiety X)-type motif 22	protein-coding	6.189	6.847	2.346	5.402	2.908	1.576	7.424	8.680	nan	7.358	4.738	2.057	4.184	7.067	6.035	7.728	6.506	5.521	1.178	1.806	2.042	2.544	2.031	2.196	11.331
1572	chr10	86947156	86958902	+	0	NA	intron (NM_138673, intron 15 of 68)	(TG)n|Simple_repeat|Simple_repeat	54913	NM_138673	192188	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	nan	0.325	0.323	0.196	0.179	0.055	0.206	0.160	0.195	0.245	0.115	0.130	0.090	nan	0.155	0.354	0.381	nan	10.360	7.097	4.131	nan	nan	9.786	0.363
13957	chr7	152210571	152218619	+	0	NA	Intergenic	Intergenic	6899760	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	nan	nan	0.678	nan	2.633	1.210	5.964	5.325	4.663	5.704	2.550	1.939	7.666	8.074	7.145	8.708	5.262	5.924	0.867	0.392	0.627	0.845	nan	0.440	9.354
2851	chr11	103139364	103143844	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	8245	NM_027658	71059	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding	1.450	1.184	0.555	nan	0.940	0.489	0.973	1.046	nan	nan	0.858	0.857	0.839	nan	1.160	1.855	1.297	1.383	2.973	2.777	2.491	4.340	2.106	1.816	1.157
11105	chr5	30949836	30956104	+	0	NA	non-coding (NR_003522, exon 2 of 9)	non-coding (NR_003522, exon 2 of 9)	2864	NM_021304	57742	Mm.389615	NM_021304	ENSMUSG00000006638	Abhd1	LABH-1|LABH1	abhydrolase domain containing 1	protein-coding	6.317	4.316	1.359	4.218	1.669	0.616	4.221	6.108	3.298	3.022	8.271	3.401	4.728	5.589	6.505	5.979	2.906	4.992	1.920	1.059	0.895	1.928	1.070	0.700	6.873
13018	chr7	26156788	26168108	+	0	NA	Intergenic	L1_Mus4|LINE|L1	-10961	NM_010000	13094	Mm.14413	NM_010000	ENSMUSG00000040660	Cyp2b9	Cyp2b	cytochrome P450, family 2, subfamily b, polypeptide 9	protein-coding	2.900	1.400	0.576	3.231	4.321	2.525	2.715	6.418	2.351	3.064	1.629	1.585	3.235	4.896	3.933	2.976	3.666	3.088	1.036	0.991	0.800	1.525	1.039	0.991	3.108
886	chr1	173352584	173353997	+	0	NA	intron (NM_053199, intron 1 of 8)	intron (NM_053199, intron 1 of 8)	14405	NM_053199	94332	Mm.330524	NM_053199	ENSMUSG00000005338	Cadm3	BIgR|Igsf4b|Necl-1|Necl1|SynCAM3|Tsll1	cell adhesion molecule 3	protein-coding	5.222	1.043	0.471	1.502	3.113	1.532	3.951	2.222	2.233	2.245	1.441	1.178	4.193	4.806	3.837	5.633	5.735	3.229	2.062	2.030	1.774	1.826	1.575	0.681	3.366
4984	chr14	121898540	121900144	+	0	NA	intron (NM_026861, intron 1 of 8)	Lx8b|LINE|L1	16432	NM_182806	110168	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	4.276	0.553	0.246	1.501	0.601	0.142	5.139	3.611	3.119	3.215	1.348	0.378	5.719	5.068	4.351	7.705	2.858	5.286	0.466	0.377	0.230	0.446	0.645	0.104	5.402
4733	chr14	61147501	61148402	+	0	NA	5' UTR (NM_172809, exon 2 of 10)	5' UTR (NM_172809, exon 2 of 10)	9494	NM_172809	50720	Mm.440703	NM_015788	ENSMUSG00000048279	Sacs	A230052M14|DNAJC29|E130115J16Rik|mKIAA0730	sacsin	protein-coding	3.973	9.420	8.322	2.914	1.438	2.386	3.520	6.900	3.551	2.201	3.267	5.019	3.128	3.586	2.039	2.609	1.278	2.709	1.573	2.185	4.127	2.653	1.641	1.949	3.764
2835	chr11	102484355	102486529	+	0	NA	intron (NM_001159492, intron 7 of 7)	B2_Mm1a|SINE|B2	-15559	NM_010575	16399	Mm.26646	NM_010575	ENSMUSG00000034664	Itga2b	AI172977|CD41|CD41B|GpIIb|alphaIIb	integrin alpha 2b	protein-coding	4.628	nan	0.303	1.300	2.237	0.888	6.181	1.830	1.888	3.220	1.548	0.606	2.953	4.705	4.685	5.735	4.093	3.614	1.764	nan	1.283	2.582	nan	nan	8.235
1329	chr10	59430850	59439091	+	0	NA	intron (NM_010959, intron 4 of 8)	B3|SINE|B2	6809	NM_010959	18302	Mm.123013	NM_010959	ENSMUSG00000009654	Oit3	EF-9|LZP	oncoprotein induced transcript 3	protein-coding	7.051	10.942	5.606	9.774	5.643	4.160	1.990	4.912	4.909	6.460	3.887	2.635	2.338	6.492	3.101	3.085	2.837	5.699	nan	5.642	4.856	6.936	5.936	5.548	nan
3728	chr12	111770805	111773338	+	0	NA	intron (NM_001025362, intron 1 of 14)	B3|SINE|B2	13203	NM_001025361	16593	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	3.288	1.620	0.800	1.771	2.451	1.115	3.659	nan	nan	nan	1.747	1.110	3.543	5.321	3.481	3.453	2.293	3.460	0.574	0.471	0.330	0.701	0.276	0.375	3.911
7410	chr18	77417248	77427597	+	0	NA	intron (NM_172834, intron 35 of 38)	intron (NM_172834, intron 35 of 38)	140464	NM_172834	240411	Mm.380247	NM_172834	ENSMUSG00000032818	Loxhd1	1700096C21Rik|4932417K07|sba	lipoxygenase homology domains 1	protein-coding	0.317	nan	0.294	0.233	0.064	0.095	0.237	0.256	0.157	nan	0.122	0.117	0.187	0.151	0.187	0.467	0.295	0.320	5.950	nan	2.202	7.506	3.742	2.814	0.592
5562	chr15	89144672	89146615	+	0	NA	intron (NM_011161, intron 7 of 11)	intron (NM_011161, intron 7 of 11)	3963	NM_011161	19094	Mm.91969	NM_011161	ENSMUSG00000053137	Mapk11	P38b|Prkm11|Sapk2|Sapk2b|p38-2|p38beta|p38beta2	mitogen-activated protein kinase 11	protein-coding	6.882	8.144	2.266	7.146	1.959	1.451	6.484	8.801	2.682	6.413	4.784	2.202	5.123	5.624	6.634	7.452	3.774	6.229	nan	1.154	1.948	3.650	1.555	1.614	11.511
3568	chr12	86476369	86477515	+	0	NA	intron (NM_001159500, intron 2 of 6)	intron (NM_001159500, intron 2 of 6)	55298	NM_011934	26380	Mm.235550	NM_011934	ENSMUSG00000021255	Esrrb	Err2|Errb|Estrrb|Nr3b2	estrogen related receptor, beta	protein-coding	3.099	0.943	0.397	1.268	0.835	0.320	3.902	1.527	1.125	1.082	0.808	0.176	2.963	4.505	5.178	6.310	4.265	3.810	0.573	0.381	0.257	0.378	0.147	0.019	6.417
11267	chr5	64891374	64898507	+	0	NA	Intergenic	IAPEz-int|LTR|ERVK	37759	NM_030682	21897	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	3.802	4.524	2.318	3.613	2.944	1.709	4.419	4.525	3.476	3.880	3.695	2.487	3.591	5.715	4.417	4.262	3.265	3.828	3.156	2.203	1.883	nan	3.311	2.678	3.662
12563	chr6	108403131	108409562	+	0	NA	intron (NM_010585, intron 35 of 61)	intron (NM_010585, intron 35 of 61)	-83397	NR_106121	102465766		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	7.441	2.090	1.119	5.447	6.771	3.538	12.948	8.378	5.810	8.308	3.255	3.554	9.835	12.494	9.150	11.336	9.229	7.494	nan	1.287	0.679	1.187	1.341	1.022	8.704
13071	chr7	29706967	29748501	+	0	NA	promoter-TSS (NM_029714)	promoter-TSS (NM_029714)	-719	NM_029714	76718	Mm.69030	NM_029714	ENSMUSG00000049123	Catsperg2	1700067C01Rik|CATSPERG	catsper channel auxiliary subunit gamma 2	protein-coding	6.918	2.568	1.449	5.741	6.506	3.934	7.651	7.853	5.169	5.768	5.133	3.176	7.524	9.469	7.476	6.815	5.906	6.742	2.343	2.173	1.598	2.451	2.633	2.113	8.102
12330	chr6	72728649	72730026	+	0	NA	intron (NM_001079822, intron 3 of 12)	B4A|SINE|B4	59708	NM_001079822	21415	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	2.083	0.624	0.552	1.852	1.222	0.740	5.217	4.045	1.902	3.051	0.472	1.337	5.795	4.024	5.115	6.736	3.785	3.640	1.101	0.357	0.712	0.560	0.935	0.424	3.395
3777	chr12	114251583	114254450	+	0	NA	Intergenic	Lx3B|LINE|L1	216450	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	nan	6.049	1.836	8.701	2.788	2.382	6.136	5.652	4.523	8.845	3.892	3.242	6.215	7.485	8.342	10.642	6.512	8.553	4.928	3.032	2.697	5.964	3.933	4.462	16.005
320	chr1	75260017	75261780	+	0	NA	intron (NM_008985, intron 3 of 22)	MIR|SINE|MIR	3310	NM_008985	19275	Mm.2902	NM_008985	ENSMUSG00000026204	Ptprn	IA-2|mIA-A|mKIAA4064	protein tyrosine phosphatase, receptor type, N	protein-coding	2.480	0.542	0.149	0.457	0.957	0.887	2.653	2.996	4.269	12.278	0.700	1.190	1.717	4.049	1.471	nan	2.032	1.792	6.306	3.714	1.936	3.259	5.882	6.207	nan
9141	chr3	9825377	9829567	+	0	NA	intron (NM_001195031, intron 1 of 8)	intron (NM_001195031, intron 1 of 8)	6207	NM_053182	94212	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	3.918	10.781	5.328	2.924	1.827	0.708	1.066	1.340	2.165	2.761	0.972	1.343	1.174	1.832	1.998	2.517	2.130	2.825	0.965	1.342	0.950	0.732	0.718	0.363	2.787
6273	chr16	96428986	96430812	+	0	NA	intron (NM_008405, intron 9 of 15)	MTD|LTR|ERVL-MaLR	13715	NM_008405	16415	Mm.12872	NM_008405	ENSMUSG00000000157	Itgb2l	5033406G21Rik|pactolus	integrin beta 2-like	protein-coding	4.818	1.443	2.146	2.772	3.913	3.840	2.437	0.633	nan	1.100	0.520	0.167	3.004	4.388	nan	0.914	0.736	nan	nan	0.772	0.732	0.488	0.581	0.924	3.731
5663	chr15	100055693	100062557	+	0	NA	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	20461	NM_001159361	239667	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	7.643	7.220	3.451	6.440	5.926	5.640	8.239	9.439	5.455	8.109	5.080	3.227	9.430	8.551	7.373	6.874	7.585	7.521	3.516	2.274	3.584	4.196	2.945	4.061	8.613
6561	chr17	34328034	34330268	+	0	NA	intron (NM_001033978, intron 1 of 4)	L1M2|LINE|L1	3476	NM_001033978	381091	Mm.139204	NM_001033978	ENSMUSG00000067341	H2-Eb2	A130038H09Rik|H-2Eb2|Ia-5|Ia5|Iebeta2	histocompatibility 2, class II antigen E beta2	protein-coding	2.608	6.239	2.069	2.349	1.062	0.797	4.399	4.758	1.713	0.929	0.834	0.315	4.028	4.204	3.051	5.343	2.357	1.985	1.143	0.952	0.440	0.874	0.724	0.591	5.420
3528	chr12	81790889	81796083	+	0	NA	Intergenic	Intergenic	-12316	NM_001174107	338372	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	5.216	1.214	0.479	4.750	2.574	0.989	5.913	4.184	3.820	4.809	1.681	1.229	7.955	7.752	6.971	9.583	5.789	7.489	0.970	0.404	0.447	1.205	0.805	0.604	12.106
3756	chr12	113812916	113820221	+	0	NA	Intergenic	L1_Mus1|LINE|L1	272660	NM_174885	238406	Mm.188683	NM_174885	ENSMUSG00000043945	Adam6a	Adam6|tMDCIV	a disintegrin and metallopeptidase domain 6A	protein-coding	5.942	1.381	0.624	4.648	4.643	2.182	5.906	7.703	5.715	7.722	4.413	2.148	7.370	11.107	6.181	9.005	5.455	4.564	1.105	0.682	0.319	0.867	0.540	0.392	11.401
811	chr1	164055360	164058224	+	0	NA	3' UTR (NM_011345, exon 14 of 14)	3' UTR (NM_011345, exon 14 of 14)	-5284	NM_011346	20343	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	0.998	0.471	0.277	nan	0.826	0.569	1.247	0.488	nan	0.583	5.147	0.914	nan	0.786	nan	0.860	0.620	0.684	0.463	0.280	0.385	nan	nan	0.277	nan
13159	chr7	51937862	51943166	+	0	NA	intron (NM_008087, intron 5 of 7)	intron (NM_008087, intron 5 of 7)	61547	NM_001330607	14453	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	5.939	0.707	0.445	5.472	5.289	3.778	6.885	11.255	4.384	5.138	1.532	0.988	8.765	11.114	7.332	9.070	6.059	7.674	2.574	1.600	1.588	3.348	2.757	2.138	8.783
465	chr1	94803109	94804564	+	0	NA	Intergenic	Intergenic	6394	NR_040473	74689	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	7.471	11.774	3.782	9.263	3.858	2.696	5.308	5.869	4.845	9.283	5.083	3.598	7.910	6.590	7.426	13.485	5.232	8.356	nan	2.402	3.481	7.320	3.135	5.104	12.435
11360	chr5	75438018	75441069	+	0	NA	Intergenic	Intergenic	-135444	NM_001122733	16590	Mm.247073	NM_021099	ENSMUSG00000005672	Kit	Bs|CD117|Fdc|Gsfsco1|Gsfsco5|Gsfsow3|SCO1|SCO5|SOW3|Ssm|Tr-kit|W|c-KIT	KIT proto-oncogene receptor tyrosine kinase	protein-coding	7.777	9.010	3.318	9.669	5.730	3.793	8.005	7.383	6.231	10.784	5.548	4.169	5.719	7.432	7.678	8.049	4.019	7.954	3.930	1.707	3.341	4.877	2.848	3.686	10.120
819	chr1	164668483	164671303	+	0	NA	Intergenic	MER44C|DNA|TcMar-Tigger	-126839	NM_019759	56429	Mm.28935	NM_019759	ENSMUSG00000026574	Dpt	1810032B19Rik|5033416F05Rik|EQ-1|Eq1	dermatopontin	protein-coding	9.892	12.162	3.731	9.154	4.188	2.263	7.296	6.414	nan	11.165	5.557	2.830	8.503	8.248	9.248	13.065	7.817	8.599	5.131	2.547	2.388	6.073	nan	2.541	11.660
5280	chr15	68191269	68196707	+	0	NA	intron (NM_198644, intron 3 of 15)	intron (NM_198644, intron 3 of 15)	64868	NM_001145888	380993	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	10.566	3.936	1.493	7.452	5.565	4.336	9.068	10.405	5.404	10.390	2.812	1.884	10.054	9.881	10.113	9.713	7.725	11.205	2.700	1.310	1.588	3.260	2.034	2.771	10.783
1177	chr10	23868508	23871061	+	0	NA	TTS (NM_011979)	TTS (NM_011979)	18322	NM_011979	26464	Mm.27334	NM_011979	ENSMUSG00000020010	Vnn3	-	vanin 3	protein-coding	7.813	9.395	4.516	6.241	2.328	2.024	5.817	5.636	4.804	6.050	5.013	2.221	5.129	7.141	6.652	6.953	4.572	6.502	5.396	2.457	2.024	4.714	3.389	3.249	7.282
1189	chr10	24836712	24839461	+	0	NA	Intergenic	ERVB4_2-LTR_MM|LTR|ERVK	-1891	NM_134005	209558	Mm.338425	NM_134005	ENSMUSG00000019989	Enpp3	AI876438|CD203c	ectonucleotide pyrophosphatase/phosphodiesterase 3	protein-coding	7.328	2.024	1.130	3.546	5.754	2.482	3.470	2.934	3.372	4.860	1.252	0.903	5.215	5.118	3.785	7.271	8.850	3.459	0.467	1.549	0.968	0.658	0.620	0.451	6.281
13792	chr7	135765254	135767456	+	0	NA	Intergenic	Intergenic	-49976	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	4.850	7.473	6.595	4.772	4.692	3.297	4.206	6.355	4.716	4.602	5.472	3.895	7.096	5.637	4.856	4.343	3.663	7.039	4.000	2.501	1.873	3.870	1.919	1.782	2.770
3680	chr12	103981188	103983179	+	0	NA	intron (NM_199314, intron 4 of 4)	intron (NM_199314, intron 4 of 4)	7760	NM_199314	380780	Mm.201338	NM_199314	ENSMUSG00000063232	Serpina11	Gm895	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11	protein-coding	8.761	12.549	4.116	10.223	2.828	1.726	5.473	6.183	4.922	9.171	4.680	2.755	7.797	7.669	10.131	12.504	6.253	8.996	5.649	1.286	2.064	7.972	2.162	2.355	15.535
10085	chr4	53158206	53161480	+	0	NA	promoter-TSS (NM_013454)	promoter-TSS (NM_013454)	52	NM_013454	11303	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	3.222	5.937	3.080	2.126	2.306	1.186	nan	2.784	2.865	3.369	1.040	0.518	2.875	6.052	1.917	3.690	1.584	2.528	nan	0.865	0.522	0.867	0.546	0.604	3.394
13247	chr7	71151113	71158150	+	0	NA	Intergenic	Intergenic	-755064	NR_130995	78156	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	6.116	6.272	4.987	4.109	5.152	4.058	3.162	6.615	4.414	4.907	4.469	2.097	5.350	9.157	4.079	4.702	4.932	3.453	1.989	2.946	2.322	1.321	2.322	1.807	4.113
8185	chr2	35315460	35320091	+	0	NA	intron (NM_013515, intron 6 of 6)	intron (NM_013515, intron 6 of 6)	19234	NM_013515	13830	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	5.685	13.366	5.967	5.313	2.617	1.609	1.854	1.973	3.363	4.513	5.218	2.315	1.844	3.124	3.057	3.317	2.081	3.068	1.389	1.677	1.542	0.977	0.881	0.814	4.438
12256	chr6	54542744	54546041	+	0	NA	intron (NM_027268, intron 2 of 7)	intron (NM_027268, intron 2 of 7)	21990	NM_027268	69938	Mm.41557	NM_027268	ENSMUSG00000019124	Scrn1	2810019K23Rik|6330535A03Rik|AI852905|SES1|mKIAA0193	secernin 1	protein-coding	5.836	3.684	1.239	6.217	2.355	0.935	5.926	5.924	3.521	6.236	2.141	1.948	5.598	7.368	7.470	10.556	5.906	6.812	3.454	1.866	1.487	3.839	3.393	2.470	8.561
3768	chr12	114031087	114037176	+	0	NA	Intergenic	Intergenic	435335	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	10.534	1.290	0.440	4.314	6.424	3.439	7.947	6.903	2.947	5.079	6.457	2.770	6.112	10.991	6.632	10.019	6.369	6.239	1.718	1.162	0.971	1.642	2.042	1.553	14.546
385	chr1	88109876	88116794	+	0	NA	intron (NM_201410, intron 2 of 5)	RLTR13G|LTR|ERVK	10078	NM_201410	394435	Mm.300095	NM_201410	ENSMUSG00000090145	Ugt1a6b	A9'|Ugt1a9	UDP glucuronosyltransferase 1 family, polypeptide A6B	protein-coding	7.939	4.278	2.807	2.756	1.667	1.083	4.588	2.820	4.328	4.745	2.318	2.294	5.395	4.746	5.310	9.443	5.092	5.280	1.102	1.341	1.135	nan	0.593	0.435	4.567
7440	chr18	83149974	83154271	+	0	NA	Intergenic	Intergenic	173762	NR_045361	70960	Mm.410834	NR_045361		4921531P14Rik	1700108N05Rik	RIKEN cDNA 4921531P14 gene	ncRNA	nan	1.090	0.962	3.578	7.235	4.063	3.734	5.516	5.224	9.960	1.924	1.350	3.228	6.082	2.524	4.431	2.860	5.263	1.342	1.733	1.239	2.736	1.090	1.023	nan
9926	chr4	9601036	9602895	+	0	NA	intron (NM_023066, intron 7 of 23)	(TG)n|Simple_repeat|Simple_repeat	41752	NM_001177853	65973	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	3.679	1.302	0.880	2.810	1.115	0.401	2.497	3.919	2.601	2.315	3.344	2.594	2.916	4.211	2.734	2.725	1.261	3.713	2.823	nan	0.508	3.645	1.144	0.796	1.725
5095	chr15	31400858	31404709	+	0	NA	Intergenic	Intergenic	-35024	NM_027496	67434	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	5.818	1.430	1.014	2.221	2.146	2.135	7.306	4.849	3.673	4.216	3.250	2.733	8.438	7.004	5.558	4.438	7.595	5.140	1.220	0.399	0.415	0.829	0.753	0.847	2.813
2578	chr11	86530122	86532503	+	0	NA	intron (NM_028259, intron 4 of 9)	B4|SINE|B4	13495	NM_028259	72508	Mm.394280	NM_028259	ENSMUSG00000020516	Rps6kb1	2610318I15Rik|4732464A07Rik|70kDa|AA959758|AI256796|AI314060|S6K1|p70/85s6k|p70s6k	ribosomal protein S6 kinase, polypeptide 1	protein-coding	5.555	7.354	5.798	4.227	3.195	2.691	3.797	1.559	4.586	4.710	1.751	1.149	5.847	5.427	4.444	5.077	5.852	5.814	1.143	1.946	2.031	nan	0.727	0.760	2.982
14464	chr8	93911634	93916097	+	0	NA	intron (NM_001113384, intron 3 of 7)	(TCC)n|Simple_repeat|Simple_repeat	98775	NM_011787	23802	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	2.104	9.151	6.043	1.943	1.476	0.535	0.917	2.035	1.420	1.954	0.678	0.879	2.510	2.058	1.683	2.940	2.172	2.361	0.896	1.122	0.628	1.027	1.046	0.684	2.188
8087	chr2	30295275	30304112	+	0	NA	intron (NM_198304, intron 3 of 43)	intron (NM_198304, intron 3 of 43)	13260	NM_198304	227699	Mm.330119	NM_198304	ENSMUSG00000052533	Nup188	BC025526|U89435|mKIAA0169	nucleoporin 188	protein-coding	8.490	8.316	1.869	10.146	4.090	2.112	8.590	8.253	nan	6.238	10.859	4.994	7.347	7.748	8.508	8.440	5.557	7.447	1.627	1.195	1.221	1.797	0.676	0.501	12.062
7469	chr19	4033452	4034751	+	0	NA	Intergenic	Intergenic	3811	NM_013541	14870	Mm.299292	NM_013541	ENSMUSG00000060803	Gstp1	GstpiB	glutathione S-transferase, pi 1	protein-coding	3.679	0.983	0.338	1.024	1.760	1.307	5.431	7.941	2.396	1.959	0.806	0.936	2.299	3.891	3.555	2.737	4.042	2.649	0.694	0.862	0.441	0.941	1.939	1.390	2.445
7213	chr18	44549707	44553183	+	0	NA	intron (NM_001085373, intron 3 of 18)	intron (NM_001085373, intron 3 of 18)	-110220	NR_026853	626275	Mm.427116	NR_026853	ENSMUSG00000097610	A930012L18Rik	-	RIKEN cDNA A930012L18 gene	ncRNA	2.065	1.572	0.977	1.427	1.419	1.310	1.653	5.827	1.631	1.448	1.424	1.503	2.000	1.384	1.201	1.982	1.353	2.235	1.150	0.998	0.743	1.018	1.349	1.065	2.107
4781	chr14	66217381	66219551	+	0	NA	intron (NM_001162365, intron 1 of 30)	intron (NM_001162365, intron 1 of 30)	-4914	NM_001162366	19229	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.561	11.199	6.274	0.335	0.395	0.169	0.621	1.080	0.640	0.515	0.510	0.141	1.199	0.494	0.988	0.773	0.504	0.601	0.594	nan	0.375	0.347	0.512	0.297	0.822
4716	chr14	58324889	58327962	+	0	NA	Intergenic	L1Md_T|LINE|L1	253739	NM_013518	14180	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	3.290	nan	0.871	6.451	2.087	0.984	0.863	nan	2.681	2.361	1.829	1.178	1.263	2.316	2.304	3.208	1.275	4.228	1.413	0.836	0.406	1.168	0.907	0.728	4.134
12408	chr6	87481243	87484798	+	0	NA	intron (NM_001037727, intron 4 of 10)	intron (NM_001037727, intron 4 of 10)	13307	NR_104483	232201	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	5.808	17.602	9.822	3.701	2.014	0.492	2.248	1.671	3.118	3.808	1.879	1.058	1.452	2.806	2.359	2.847	2.284	nan	nan	2.656	0.965	0.637	0.635	0.407	3.115
7520	chr19	7366417	7371027	+	0	NA	intron (NM_001033139, intron 5 of 5)	B2_Mm2|SINE|B2	-14281	NR_045703	654802	Mm.414924	NR_045703		1700105P06Rik	-	RIKEN cDNA 1700105P06 gene	ncRNA	8.768	9.224	3.056	6.428	4.649	1.945	9.401	10.323	nan	7.366	6.635	3.122	6.864	9.011	7.852	8.089	7.081	8.293	2.728	2.348	1.219	2.955	3.523	1.544	13.527
1166	chr10	21388472	21390665	+	0	NA	intron (NM_178713, intron 5 of 6)	intron (NM_178713, intron 5 of 6)	12268	NM_178713	237320	Mm.90181	NM_178713	ENSMUSG00000037542	Aldh8a1	Raldh4	aldehyde dehydrogenase 8 family, member A1	protein-coding	3.335	1.495	1.182	3.905	1.279	0.103	0.571	0.839	2.591	2.684	0.930	0.752	0.949	2.133	1.433	2.255	1.474	2.911	0.799	0.705	0.358	1.350	0.255	0.190	nan
8381	chr2	76355170	76356336	+	0	NA	intron (NM_009989, intron 3 of 3)	intron (NM_009989, intron 3 of 3)	4700	NM_009989	13067	Mm.4872	NM_009989	ENSMUSG00000056436	Cyct	T-Cc	cytochrome c, testis	protein-coding	3.945	0.509	0.334	2.054	1.251	1.079	0.587	1.217	1.245	4.742	0.636	0.598	4.154	4.338	nan	1.877	4.931	2.958	0.584	0.295	0.565	0.647	0.953	0.667	nan
15541	chr9	114898094	114899903	+	0	NA	TTS (NM_175380)	TTS (NM_175380)	34989	NM_175380	333433	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	2.282	0.623	0.218	2.165	1.618	0.540	2.475	2.136	2.540	2.766	1.322	0.962	2.183	2.138	2.288	3.510	1.585	2.607	1.878	1.647	0.917	3.689	nan	1.527	4.359
3091	chr11	119802584	119811181	+	0	NA	intron (NM_001306081, intron 9 of 32)	intron (NM_001306081, intron 9 of 32)	27483	NR_045313	319454	Mm.442144	NR_045312	ENSMUSG00000085081	Rptoros	A430071A18Rik	regulatory associated protein of MTOR, complex 1, opposite strand	ncRNA	6.348	nan	0.976	6.707	4.548	2.832	nan	nan	5.026	8.168	4.083	2.704	5.989	9.219	6.772	7.400	5.050	nan	3.261	nan	1.902	4.044	2.649	2.718	7.314
2166	chr11	51466362	51473543	+	0	NA	intron (NM_153393, intron 2 of 28)	intron (NM_153393, intron 2 of 28)	-114805	NM_028398	72947	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	3.044	0.910	0.540	2.214	2.404	1.484	5.416	6.431	1.925	1.842	5.020	2.891	3.052	3.530	3.932	nan	2.680	nan	nan	1.784	2.200	nan	nan	1.412	3.472
5637	chr15	99211704	99215555	+	0	NA	Intergenic	Intergenic	-11347	NM_010601	16512	Mm.374793	NM_010601	ENSMUSG00000037579	Kcnh3	AU019351|C030044P22Rik|Elk2|Kv12.2|Melk2	potassium voltage-gated channel, subfamily H (eag-related), member 3	protein-coding	6.761	0.807	0.632	2.721	3.030	2.467	6.582	9.712	3.475	3.159	1.644	2.957	7.825	5.681	5.492	5.141	10.865	3.869	1.880	1.060	1.837	1.720	1.964	2.109	5.367
1378	chr10	67501736	67503263	+	0	NA	Intergenic	Intergenic	-35370	NM_010118	13654	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	3.213	3.009	2.113	2.393	2.024	1.282	3.098	3.789	2.638	2.141	3.604	3.038	5.092	4.698	3.355	3.081	2.814	4.189	1.223	0.593	0.241	1.301	0.497	0.289	1.607
7420	chr18	80614985	80617313	+	0	NA	intron (NM_198429, intron 9 of 9)	intron (NM_198429, intron 9 of 9)	-71603	NR_028424	100039348	Mm.254722	NR_028424		Gm2176	A430076E10Rik	glucosamine-6-phosphate deaminase 1 pseudogene	pseudo	0.609	16.896	7.768	1.100	0.288	0.052	0.768	0.667	0.689	nan	0.466	0.347	0.343	0.496	0.652	0.704	0.585	0.724	0.557	nan	0.263	0.551	0.327	0.288	1.258
1054	chr1	195124031	195131376	+	0	NA	intron (NM_013499, intron 3 of 9)	intron (NM_013499, intron 3 of 9)	3867	NM_013499	12946	Mm.301652	NM_013499	ENSMUSG00000016481	Cr1l	Crry|Mcp|mCRY	complement component (3b/4b) receptor 1-like	protein-coding	4.097	1.038	0.379	1.830	2.303	0.952	5.143	4.709	3.089	3.469	3.712	2.125	5.008	6.357	4.992	9.211	5.237	4.158	0.873	0.611	0.332	1.200	nan	0.546	7.595
5726	chr15	102240675	102242637	+	0	NA	intron (NM_001042727, intron 2 of 7)	B1_Mur3|SINE|Alu	4844	NM_001042727	19411	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	2.482	3.091	2.454	2.457	3.164	3.839	2.093	2.700	2.934	2.134	1.737	1.747	2.532	1.972	2.111	nan	2.366	2.669	1.802	1.660	2.634	1.048	2.259	2.369	1.777
8354	chr2	72874411	72877523	+	0	NA	Intergenic	Intergenic	-62250	NR_102349	76218	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	7.128	0.827	0.576	4.818	6.057	4.405	7.717	10.006	4.683	5.955	2.840	1.398	8.403	9.382	6.465	9.387	9.124	6.427	0.673	1.261	1.097	1.095	0.558	0.660	7.987
3797	chr12	118778315	118785881	+	0	NA	Intergenic	Intergenic	-64231	NM_177082	320145	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	6.152	0.597	0.557	3.197	2.588	1.555	5.492	4.078	4.842	4.766	1.518	1.851	8.547	5.347	6.761	7.275	7.725	6.154	0.706	0.524	0.488	0.750	0.404	0.323	5.403
3616	chr12	92921855	92925464	+	0	NA	Intergenic	IMPB_01|Satellite|Satellite	521164	NR_126436	75295	Mm.243878	NR_126436		4930559C10Rik	-	RIKEN cDNA 4930559C10 gene	ncRNA	6.743	1.624	0.542	2.607	1.994	0.680	5.233	5.855	2.889	3.692	4.841	2.359	7.551	6.564	5.967	7.826	5.169	5.226	2.599	0.961	0.543	2.324	3.262	1.689	9.579
621	chr1	134229387	134232646	+	0	NA	intron (NM_001291930, intron 1 of 1)	intron (NM_001291930, intron 1 of 1)	3840	NM_001291928	11539	Mm.298908	NM_009629	ENSMUSG00000042429	Adora1	A1-AR|A1AR|A1R|AA1R|AI848715|BB176431|Ri	adenosine A1 receptor	protein-coding	8.957	2.740	0.805	4.717	3.922	1.688	7.106	5.341	3.171	3.741	1.837	1.348	4.264	6.582	5.408	8.217	5.062	5.168	1.158	1.536	0.812	1.539	1.549	1.383	7.174
6056	chr16	37778707	37781699	+	0	NA	intron (NM_008047, intron 2 of 10)	intron (NM_008047, intron 2 of 10)	3148	NM_008047	14314	Mm.182434	NM_008047	ENSMUSG00000022816	Fstl1	AI316791|AW107808|Fstl|TSC-36	follistatin-like 1	protein-coding	2.219	0.828	0.511	1.566	1.596	1.461	1.650	1.753	2.613	3.821	0.681	0.849	4.149	5.109	3.376	4.160	1.975	1.946	1.372	1.108	1.011	1.249	0.766	0.530	2.581
7537	chr19	9095702	9099327	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-9558	NM_011681	22287	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	6.055	3.478	2.541	4.187	4.449	3.644	3.736	4.334	nan	3.706	3.778	2.004	2.796	6.392	3.169	nan	5.206	4.347	0.454	1.292	1.759	0.506	0.991	0.921	6.609
14575	chr8	109277208	109278232	+	0	NA	Intergenic	Intergenic	63188	NR_002928	384864	Mm.390083	NR_002928		Gm1943	-	WD repeat domain 70 pseudogene	pseudo	1.739	0.565	0.416	0.707	1.246	0.973	1.606	2.459	1.069	0.467	1.396	3.012	2.285	2.008	0.939	1.003	1.328	0.681	1.869	5.685	5.555	nan	4.390	3.935	0.481
9938	chr4	11078538	11086138	+	0	NA	Intergenic	L2|LINE|L2	-6133	NM_001085493	76947	Mm.275265	NM_001085493	ENSMUSG00000050323	Ndufaf6	2310030N02Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6	protein-coding	4.706	6.863	2.673	5.576	3.013	2.294	2.247	4.005	4.161	4.732	2.965	2.076	2.208	3.473	3.546	4.679	2.001	5.512	4.558	nan	2.435	6.952	2.712	2.570	5.576
12325	chr6	72429820	72431430	+	0	NA	3' UTR (NM_019802, exon 15 of 15)	3' UTR (NM_019802, exon 15 of 15)	-8058	NR_046011	78108	Mm.440743	NR_046011	ENSMUSG00000108591	Particl	4930414L22Rik|AI449819	promoter of Mat2a antisense radiation induced circulating long non-coding RNA	ncRNA	3.085	0.734	0.403	3.781	3.349	2.868	2.143	2.247	3.990	2.558	0.640	1.934	3.483	5.108	3.423	5.344	2.258	5.338	0.944	1.028	1.229	0.815	0.475	0.801	2.702
10397	chr4	115746970	115750535	+	0	NA	intron (NM_172698, intron 3 of 11)	intron (NM_172698, intron 3 of 11)	10679	NM_172698	230648	Mm.283565	NM_172698	ENSMUSG00000034210	Efcab14	4732418C07Rik	EF-hand calcium binding domain 14	protein-coding	12.888	11.237	2.719	13.352	9.500	6.618	11.038	11.312	7.967	15.562	9.091	5.596	9.372	14.092	11.686	13.500	7.679	12.161	6.316	5.303	4.986	8.735	5.261	6.016	20.512
9511	chr3	94488482	94490314	+	0	NA	intron (NR_110353, intron 10 of 11)	intron (NR_110353, intron 10 of 11)	6676	NR_110353	78784	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	1.582	0.172	0.117	0.961	1.802	1.065	2.578	1.998	2.287	1.569	nan	0.760	2.152	4.313	1.770	3.212	3.444	2.621	0.765	0.757	0.734	0.370	1.121	0.832	1.536
7389	chr18	74968856	74970160	+	0	NA	Intergenic	L2a|LINE|L2	-8245	NM_010720	16891	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	3.774	nan	0.695	1.947	3.962	1.614	3.361	3.781	2.697	3.982	2.519	1.992	4.594	3.449	3.780	2.850	2.744	2.352	1.314	nan	0.631	0.633	1.296	0.990	2.362
2310	chr11	62268950	62273343	+	0	NA	intron (NM_027198, intron 3 of 4)	intron (NM_027198, intron 3 of 4)	10249	NM_027198	69747	Mm.141150	NM_027198	ENSMUSG00000014243	Zswim7	2410012H22Rik	zinc finger SWIM-type containing 7	protein-coding	10.201	13.234	4.061	11.525	5.543	3.623	9.866	8.262	7.499	14.480	7.029	4.525	10.029	10.774	11.362	12.052	8.124	11.309	5.932	3.660	3.898	5.978	4.240	4.478	14.655
12518	chr6	97769575	97771891	+	0	NA	Intergenic	Intergenic	-36325	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	5.473	1.751	0.945	2.906	4.113	1.604	2.173	1.818	2.680	3.239	1.752	1.086	1.444	5.196	3.638	5.524	3.698	3.413	nan	nan	0.582	0.791	0.613	0.244	2.524
7579	chr19	10969100	10971036	+	0	NA	intron (NM_023529, intron 1 of 8)	MER103C|DNA|hAT-Charlie	4602	NM_023529	69826	Mm.273404	NM_023529	ENSMUSG00000024731	Ms4a10	2010001N17Rik	membrane-spanning 4-domains, subfamily A, member 10	protein-coding	5.618	7.771	1.955	5.589	1.557	0.816	5.058	7.117	4.863	5.128	3.377	2.689	4.498	5.308	6.373	7.095	3.934	5.936	2.850	1.563	1.014	5.905	2.322	1.942	10.317
2495	chr11	77498168	77501558	+	0	NA	intron (NM_001004144, intron 4 of 19)	intron (NM_001004144, intron 4 of 19)	6451	NM_001004144	216963	Mm.290182	NM_001004144	ENSMUSG00000011877	Git1	Cat-1|p95Cat	G protein-coupled receptor kinase-interactor 1	protein-coding	12.836	14.236	6.993	12.953	9.836	5.717	9.870	9.011	7.001	15.896	8.826	5.909	8.849	13.026	nan	9.998	9.388	8.796	7.961	5.575	nan	7.333	6.675	6.494	13.481
3052	chr11	117867482	117872017	+	0	NA	exon (NM_027919, exon 5 of 7)	exon (NM_027919, exon 5 of 7)	3777	NM_027919	71776	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	4.799	3.156	0.976	4.562	3.862	1.687	3.373	4.960	3.537	4.296	6.257	1.791	2.924	4.995	3.560	4.432	2.987	5.290	1.842	nan	1.249	2.864	1.789	1.067	4.965
2438	chr11	72973996	72975293	+	0	NA	intron (NM_001163336, intron 7 of 20)	intron (NM_001163336, intron 7 of 20)	13475	NM_001163337	53313	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	2.892	2.834	0.405	4.269	3.616	1.861	2.112	1.915	3.654	5.052	0.680	0.293	1.955	4.937	3.878	3.470	3.856	4.066	0.351	0.663	0.731	1.052	nan	0.293	5.092
3246	chr12	25994223	25998380	+	0	NA	Intergenic	L1Md_F2|LINE|L1	214204	NR_131149	629481	Mm.390460	NR_131149		Gm29687	-	predicted gene, 29687	ncRNA	4.701	4.460	2.490	2.961	2.904	1.422	4.587	2.502	2.477	3.192	3.551	0.835	4.786	4.480	6.705	6.738	4.304	4.535	1.243	0.691	0.373	1.776	0.461	0.256	9.647
4179	chr13	56857473	56860409	+	0	NA	intron (NM_001302373, intron 3 of 12)	intron (NM_001302373, intron 3 of 12)	36848	NM_001302372	26946	Mm.62409	NM_012035	ENSMUSG00000021541	Trpc7	TRP7|Trrp8	transient receptor potential cation channel, subfamily C, member 7	protein-coding	2.472	0.695	0.264	1.496	0.592	0.337	3.542	3.741	2.098	2.687	0.894	1.145	3.741	4.322	4.475	5.349	2.691	3.122	3.477	1.665	1.123	5.030	3.920	2.015	5.652
14287	chr8	72493457	72499031	+	0	NA	exon (NM_027485, exon 3 of 3)	exon (NM_027485, exon 3 of 3)	-3630	NM_177766	270066	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	6.060	3.941	1.192	6.407	3.385	1.773	4.112	8.286	4.023	6.527	3.678	2.180	6.252	7.499	5.834	7.516	5.331	6.406	nan	1.563	1.733	3.506	1.421	1.297	9.434
5899	chr16	22260415	22261399	+	0	NA	intron (NM_001330555, intron 1 of 9)	ID_B1|SINE|B4	5098	NM_001330554	20462	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta homolog (Drosophila)	protein-coding	3.323	3.700	1.353	2.583	2.374	2.465	1.789	2.944	2.613	2.759	1.493	1.223	2.621	3.312	1.978	nan	3.405	3.799	1.460	0.863	1.038	0.646	0.451	1.059	1.867
5481	chr15	81784163	81785894	+	0	NA	intron (NM_001081016, intron 16 of 22)	L2|LINE|L2	-17645	NM_153484	21685	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	4.056	nan	0.682	2.463	3.221	3.052	6.563	6.229	4.284	nan	nan	3.953	3.996	3.818	4.534	5.752	5.056	3.976	1.284	0.917	0.650	nan	0.663	1.007	5.189
15533	chr9	113615564	113617752	+	0	NA	Intergenic	Intergenic	-29506	NR_040760	102688	Mm.394901	NR_040760	ENSMUSG00000109890	AU023762	-	expressed sequence AU023762	ncRNA	8.482	10.784	3.333	9.831	3.916	4.095	5.184	7.226	6.975	11.369	7.569	4.412	6.456	7.668	7.624	9.670	5.755	9.451	3.760	2.398	4.159	5.047	nan	5.395	13.067
10628	chr4	132417770	132420535	+	0	NA	intron (NM_001161797, intron 1 of 12)	intron (NM_001161797, intron 1 of 12)	3294	NM_001161797	100169	Mm.158361	NM_175306	ENSMUSG00000066043	Phactr4	3110001B12Rik|AI527228|AW495572|C330013F19Rik|N28169|mKIAA4120	phosphatase and actin regulator 4	protein-coding	4.270	0.463	0.860	2.664	1.890	2.834	2.471	2.102	3.972	3.451	1.211	1.454	4.027	4.226	2.641	4.265	4.175	3.378	1.545	1.710	2.084	0.947	1.488	1.717	3.341
9663	chr3	105760841	105763253	+	0	NA	intron (NM_145541, intron 1 of 7)	intron (NM_145541, intron 1 of 7)	39334	NM_145541	109905	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein-1a	protein-coding	8.230	11.385	3.030	9.559	4.506	1.832	8.717	6.570	5.361	7.988	6.895	3.015	8.846	8.982	10.277	9.988	7.453	9.576	5.571	3.173	2.742	5.733	2.869	3.314	13.270
8281	chr2	60527001	60541358	+	0	NA	intron (NM_008867, intron 2 of 29)	intron (NM_008867, intron 2 of 29)	19129	NM_008867	18779	Mm.5092	NM_008867	ENSMUSG00000054580	Pla2r1	Pla2-r|Pla2g1br|Pla2r	phospholipase A2 receptor 1	protein-coding	5.146	0.933	0.681	2.922	3.501	2.018	5.583	6.321	4.331	4.113	3.289	2.578	6.745	6.806	4.934	6.187	4.993	7.410	0.840	0.542	0.474	0.630	0.529	0.516	5.874
7267	chr18	57826845	57828785	+	0	NA	Intergenic	Intergenic	-50863	NM_009194	20496	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	2.575	0.837	0.473	nan	1.347	0.826	10.228	6.615	5.439	4.307	2.022	2.597	9.150	5.957	8.041	8.405	5.167	2.894	1.470	1.240	0.884	nan	1.084	1.395	3.853
2050	chr11	30095224	30099147	+	0	NA	Intergenic	Intergenic	-71152	NM_146016	237711	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding	3.495	11.370	4.949	6.995	4.836	3.992	1.718	5.690	5.691	5.678	6.453	6.521	4.084	3.886	4.735	5.842	3.724	4.616	5.149	3.900	3.706	6.250	3.340	3.477	1.936
13289	chr7	74885077	74888055	+	0	NA	Intergenic	Intergenic	-143645	NR_131122	75205	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	-	RIKEN cDNA 4930533N22 gene	ncRNA	5.436	2.336	0.832	4.486	3.356	1.803	4.803	5.037	2.833	4.345	2.166	0.996	6.187	6.908	4.926	5.643	4.800	5.715	1.420	1.290	0.782	1.728	0.849	0.588	6.604
13273	chr7	73458991	73460881	+	0	NA	intron (NM_001081345, intron 28 of 38)	MTD|LTR|ERVL-MaLR	81810	NM_001081345	244059	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	2.229	0.513	0.273	nan	1.661	2.182	3.530	1.967	2.422	2.242	0.585	0.745	0.757	2.788	2.369	2.651	1.639	2.534	0.746	0.968	0.537	0.518	0.500	0.407	4.085
3815	chr13	4227983	4232693	+	0	NA	Intergenic	MER50-int|LTR|ERV1	-3402	NM_001013785	432720	Mm.22832	NM_001013785	ENSMUSG00000071551	Akr1c19	1810010N06Rik	aldo-keto reductase family 1, member C19	protein-coding	5.253	0.447	0.705	2.592	2.540	1.120	5.771	6.447	3.248	3.733	0.642	0.831	7.253	9.104	5.925	5.780	4.767	4.556	0.607	0.599	0.442	0.466	1.450	1.218	5.202
1311	chr10	58575834	58579674	+	0	NA	Intergenic	Lx|LINE|L1	79817	NM_001162956	76138	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	7.632	0.549	0.317	4.855	4.092	2.922	2.450	1.676	4.345	5.992	0.768	0.977	3.864	5.683	4.066	5.800	5.102	6.972	nan	0.728	0.584	1.100	0.918	0.657	7.698
14783	chr8	127417640	127422945	+	0	NA	intron (NM_001309391, intron 19 of 24)	ID_B1|SINE|B4	120640	NM_001013580	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	6.238	nan	1.480	6.654	3.222	2.778	6.091	8.443	4.617	9.587	3.322	2.205	7.846	7.756	8.522	10.174	5.473	7.898	nan	1.401	2.543	nan	1.767	nan	14.538
12366	chr6	84646936	84650366	+	0	NA	intron (NM_177077, intron 20 of 21)	intron (NM_177077, intron 20 of 21)	-54743	NM_001177713	232174	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	3.750	0.568	0.460	3.050	3.989	2.228	3.726	6.436	4.858	4.827	2.037	3.580	5.375	7.353	4.440	6.094	4.007	3.954	nan	1.032	0.830	1.171	0.962	1.100	3.218
1787	chr10	118578692	118581869	+	0	NA	Intergenic	Intergenic	-23755	NR_104123	103214	Mm.30529	NR_104123		Tmevpg1	AI447422	Theiler's murine encephalomyelitis virus persistence candidate gene 1	ncRNA	0.409	0.493	0.171	0.555	0.391	0.040	0.386	0.299	0.311	0.455	0.159	0.191	0.157	0.266	0.527	0.716	0.406	nan	4.889	2.848	1.726	5.200	3.966	2.581	0.492
11081	chr5	25119524	25120414	+	0	NA	Intergenic	ID_B1|SINE|B4	18994	NR_027851	67261	Mm.461781	NM_026059	ENSMUSG00000043833	2900005J15Rik	-	RIKEN cDNA 2900005J15 gene	ncRNA	1.589	0.735	0.224	0.879	0.513	0.174	6.950	4.355	2.078	1.376	4.362	2.812	2.903	3.317	2.266	2.890	0.709	2.493	0.695	0.629	0.351	1.094	1.125	0.219	1.583
6062	chr16	38089551	38093431	+	0	NA	intron (NM_001347232, intron 1 of 11)	(TTA)n|Simple_repeat|Simple_repeat	-2231	NR_033221	414072	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	10.844	7.003	2.481	8.427	6.498	4.469	8.775	10.261	6.533	9.992	6.274	4.879	8.424	10.351	8.786	10.419	8.518	9.535	7.858	4.900	3.570	4.860	6.588	5.775	nan
8229	chr2	48266994	48270057	+	0	NA	Intergenic	Lx8b|LINE|L1	-545584	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	6.240	0.472	0.798	2.414	2.019	1.334	5.549	5.814	4.660	4.228	1.668	0.697	7.256	5.424	4.219	5.296	5.761	4.859	1.641	1.184	1.834	1.384	2.872	2.422	4.058
936	chr1	182208609	182210731	+	0	NA	Intergenic	ORR1A2|LTR|ERVL-MaLR	-51572	NM_001166728	625823	Mm.479992	NM_001166728	ENSMUSG00000091013	Vmn1r1	EG625823|Gm6628	vomeronasal 1 receptor 1	protein-coding	6.473	3.017	1.093	5.088	2.769	0.958	5.240	4.044	3.483	3.558	1.095	0.849	6.478	6.491	5.991	10.820	4.845	6.540	2.071	1.229	0.631	3.884	1.479	0.797	6.203
15409	chr9	97895522	97897573	+	0	NA	intron (NM_022319, intron 1 of 17)	intron (NM_022319, intron 1 of 17)	-106873	NR_110443	66737	Mm.445908	NR_110443	ENSMUSG00000090255	4921534H16Rik	-	RIKEN cDNA 4921534H16 gene	ncRNA	2.483	0.565	0.180	0.767	0.187	0.061	1.940	5.475	0.321	0.465	0.272	0.077	2.122	1.544	2.834	3.236	1.820	0.696	1.332	0.608	0.103	1.112	1.764	0.956	5.319
14712	chr8	124384967	124386588	+	0	NA	intron (NM_171824, intron 1 of 6)	intron (NM_171824, intron 1 of 6)	48159	NM_171824	209966	Mm.234233	NM_171824	ENSMUSG00000050751	Pgbd5	2900019M05Rik|AI854313	piggyBac transposable element derived 5	protein-coding	2.063	nan	0.318	nan	1.275	0.954	nan	nan	1.067	1.077	2.424	0.636	1.258	2.771	nan	1.555	1.178	nan	nan	0.516	1.251	nan	0.858	nan	nan
5736	chr15	103043988	103047649	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	11423	NM_013553	15423	Mm.1351	NM_013553	ENSMUSG00000075394	Hoxc4	Hox-3.5	homeobox C4	protein-coding	9.534	2.296	1.659	4.669	3.778	2.304	12.756	12.025	5.906	5.881	3.695	3.042	11.788	7.710	7.576	7.109	10.933	7.526	4.658	2.900	2.193	3.127	4.049	3.470	5.586
7417	chr18	80440985	80442744	+	0	NA	intron (NM_026295, intron 10 of 12)	intron (NM_026295, intron 10 of 12)	27803	NM_026295	67655	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	3.767	nan	1.086	0.750	1.456	1.018	3.034	1.695	1.295	nan	1.386	0.912	1.489	1.585	1.159	1.237	1.575	1.724	2.086	1.968	1.753	0.910	4.746	5.011	2.079
5110	chr15	36199553	36200647	+	0	NA	intron (NM_012031, intron 9 of 18)	intron (NM_012031, intron 9 of 18)	20570	NM_012031	26942	Mm.295539	NM_012031	ENSMUSG00000037617	Spag1	tpis	sperm associated antigen 1	protein-coding	4.039	1.167	0.921	1.878	1.069	0.329	3.696	4.254	2.189	1.686	1.204	1.207	3.059	3.151	4.282	3.237	4.792	4.880	0.744	0.704	0.197	nan	0.321	0.104	1.901
4510	chr14	21513217	21516784	+	0	NA	intron (NM_017479, intron 1 of 16)	Tigger7|DNA|TcMar-Tigger	15215	NM_017479	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	4.400	8.780	2.545	7.829	3.063	1.533	4.451	6.852	4.042	7.370	4.429	2.453	4.368	7.150	7.804	7.988	3.019	5.841	4.655	1.632	1.351	4.948	2.084	2.872	10.644
701	chr1	138549230	138550491	+	0	NA	intron (NM_001311148, intron 2 of 7)	MTE2a|LTR|ERVL-MaLR	69897	NM_021605	59125	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	3.495	1.348	0.693	1.343	2.599	1.126	4.806	3.720	1.790	1.578	1.759	2.075	3.514	3.469	3.244	4.995	4.319	2.073	1.323	0.849	0.991	0.578	1.035	1.756	2.416
3710	chr12	109792449	109793979	+	0	NA	Intergenic	Lx5|LINE|L1	45336	NR_037233	100499517		NR_037233	ENSMUSG00000093351	Mir3072	mir-3072|mmu-mir-3072	microRNA 3072	ncRNA	1.924	0.604	0.319	nan	0.612	1.089	1.696	nan	nan	4.097	1.316	0.552	0.544	2.320	1.862	1.736	0.852	1.499	3.946	3.127	4.209	4.915	4.829	7.943	3.518
12240	chr6	52149276	52154358	+	0	NA	Intergenic	Intergenic	6500	NM_010449	15394	Mm.197	NM_010449	ENSMUSG00000029844	Hoxa1	ERA1|Hox-1.6	homeobox A1	protein-coding	3.976	1.976	0.816	7.303	2.328	1.282	1.319	1.203	2.060	3.505	1.305	1.049	0.962	2.371	2.076	3.075	1.677	3.924	nan	1.214	0.531	0.623	0.550	0.432	3.527
9365	chr3	65708197	65710679	+	0	NA	intron (NM_001166659, intron 3 of 12)	(CAA)n|Simple_repeat|Simple_repeat	43210	NM_001166659	624866	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	3.433	1.098	0.538	1.481	0.814	0.348	4.682	1.018	1.391	1.604	0.961	1.974	4.196	4.442	2.137	nan	0.905	1.700	0.489	1.124	0.595	0.869	0.664	0.287	5.787
6251	chr16	95429897	95432099	+	0	NA	intron (NM_001302152, intron 3 of 10)	intron (NM_001302152, intron 3 of 10)	28350	NM_001302154	13876	Mm.164531	NM_133659	ENSMUSG00000040732	Erg	D030036I24Rik	avian erythroblastosis virus E-26 (v-ets) oncogene related	protein-coding	4.152	0.924	0.299	2.514	1.029	0.388	2.946	2.444	3.491	4.178	1.092	0.850	4.583	4.621	nan	3.747	2.691	5.055	nan	0.903	0.657	1.881	0.476	0.312	2.900
13672	chr7	123635150	123639543	+	0	NA	Intergenic	Intergenic	-136897	NM_001081329	210162	Mm.135397	NM_175435	ENSMUSG00000030757	Zkscan2	9430065N20Rik|AW493225|Zfp694	zinc finger with KRAB and SCAN domains 2	protein-coding	2.840	0.615	0.410	1.733	5.314	3.465	1.601	5.308	2.269	2.348	1.892	1.453	1.935	3.244	nan	1.620	1.998	2.416	0.861	1.001	0.596	0.484	0.812	0.607	1.914
11366	chr5	77378831	77387103	+	0	NA	intron (NM_008048, intron 1 of 4)	intron (NM_008048, intron 1 of 4)	25078	NM_001159518	29817	Mm.233470	NM_008048	ENSMUSG00000036256	Igfbp7	AGM|Fstl2|Mac25	insulin-like growth factor binding protein 7	protein-coding	4.750	4.360	2.243	4.392	3.678	2.843	6.977	7.038	5.701	5.206	2.562	1.870	5.533	7.799	7.250	7.834	5.444	6.468	2.250	1.552	1.707	2.879	2.347	2.084	5.162
8978	chr2	165420237	165428835	+	0	NA	exon (NM_054055, exon 9 of 13)	exon (NM_054055, exon 9 of 13)	-24142	NM_029021	74614	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	9.560	1.207	0.581	4.296	3.603	1.877	5.597	8.873	4.104	5.332	7.085	4.313	8.573	6.106	4.640	7.971	8.922	nan	nan	0.837	0.723	0.870	1.038	0.708	13.018
3630	chr12	100568317	100571189	+	0	NA	intron (NM_153587, intron 14 of 17)	intron (NM_153587, intron 14 of 17)	-48931	NM_001033213	104718	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	1.637	0.915	0.381	1.635	0.747	0.440	0.725	0.574	1.098	1.094	8.323	2.083	1.266	0.778	1.373	1.809	0.938	2.068	0.958	0.802	0.548	1.205	0.817	0.809	2.844
13731	chr7	132739486	132752338	+	0	NA	intron (NM_001347630, intron 3 of 3)	intron (NM_001347630, intron 3 of 3)	31004	NM_001347630	77938	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	2.578	16.672	7.476	2.489	0.979	0.598	1.072	nan	1.928	2.242	0.826	0.675	1.239	2.281	nan	1.828	1.401	2.341	0.666	0.940	0.467	0.565	0.380	0.245	2.280
8696	chr2	132521174	132525509	+	0	NA	intron (NR_028286, intron 3 of 3)	intron (NR_028286, intron 3 of 3)	32613	NR_028286	70371	Mm.394667	NR_028286	ENSMUSG00000086379	1700026D11Rik	-	RIKEN cDNA 1700026D11 gene	ncRNA	3.891	1.617	0.919	4.569	2.741	1.712	1.477	4.818	2.314	1.801	1.586	1.316	0.933	1.339	1.492	nan	1.633	3.036	nan	2.858	3.248	3.705	3.990	4.209	2.629
7176	chr18	38343874	38346275	+	0	NA	Intergenic	MIR|SINE|MIR	-6081	NM_011937	26384	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	9.411	5.769	1.997	7.269	4.154	1.754	10.160	11.404	4.341	6.497	6.704	3.696	8.398	10.503	7.891	7.472	5.209	6.952	4.902	3.223	2.740	6.618	4.800	5.385	11.737
2708	chr11	96778096	96781930	+	0	NA	Intergenic	Charlie1|DNA|hAT-Charlie	-2458	NM_001163389	74479	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	6.142	nan	1.625	4.885	6.659	5.565	7.121	7.740	5.827	6.830	5.080	5.071	7.532	9.390	6.431	7.603	6.878	6.808	2.430	nan	2.524	1.773	nan	nan	6.677
1650	chr10	95224175	95231223	+	0	NA	intron (NM_009950, intron 2 of 2)	RSINE1|SINE|B4	-81874	NR_131146	628062		NR_131146		Gm29684	-	predicted gene, 29684	ncRNA	3.749	1.023	1.024	1.916	4.071	2.706	2.975	3.847	2.959	4.867	3.681	2.120	4.568	5.409	3.377	3.298	3.236	2.868	nan	1.483	1.064	nan	1.460	0.914	2.051
6999	chr18	5389891	5392079	+	0	NA	Intergenic	Intergenic	-56546	NM_178722	240186	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	2.634	1.287	0.869	5.349	1.102	0.338	0.971	1.175	1.889	1.945	1.208	1.270	nan	1.644	1.480	1.630	1.142	3.581	0.627	0.630	0.264	0.795	0.548	0.355	1.998
13799	chr7	136906900	136909205	+	0	NA	intron (NM_008598, intron 1 of 4)	MTEb|LTR|ERVL-MaLR	13441	NM_008598	17314	Mm.440219	NM_008598	ENSMUSG00000054612	Mgmt	AGT|AI267024|Agat	O-6-methylguanine-DNA methyltransferase	protein-coding	4.566	1.685	0.626	3.646	4.287	1.941	3.341	6.535	3.702	3.611	6.051	2.866	4.819	4.278	6.315	6.468	2.391	6.388	1.549	1.405	0.590	1.971	1.967	1.133	5.973
2539	chr11	80577521	80581608	+	0	NA	intron (NM_177390, intron 20 of 21)	L1MC3|LINE|L1	-70458	NR_126552	77417	Mm.437510	NR_126552	ENSMUSG00000085078	C030013C21Rik	-	RIKEN cDNA C030013C21 gene	ncRNA	nan	0.596	0.871	4.643	6.674	3.968	nan	3.613	5.125	4.602	1.251	1.238	4.075	nan	nan	nan	4.017	nan	0.649	1.413	nan	1.116	1.143	0.908	3.955
10046	chr4	46044990	46046827	+	0	NA	intron (NM_021883, intron 1 of 9)	intron (NM_021883, intron 1 of 9)	6686	NM_021883	21916	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	4.514	nan	0.963	3.163	3.700	3.323	4.046	1.657	2.240	4.173	0.726	0.434	2.735	6.008	2.819	4.503	4.525	nan	0.892	0.495	0.990	nan	0.554	0.784	6.858
9359	chr3	65123418	65125261	+	0	NA	intron (NM_010597, intron 1 of 13)	intron (NM_010597, intron 1 of 13)	14971	NM_010597	16497	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	2.693	2.597	2.019	1.537	1.489	0.731	3.422	4.113	2.069	1.294	1.897	1.352	3.287	3.686	1.756	2.464	3.581	3.300	0.921	0.608	0.172	0.272	0.459	0.297	1.759
3639	chr12	101519095	101522538	+	0	NA	intron (NM_173023, intron 15 of 26)	intron (NM_173023, intron 15 of 26)	116143	NM_173023	271036	Mm.84218	NM_173023	ENSMUSG00000047014	Catsperb	4931410B03|4932415G16Rik	catsper channel auxiliary subunit beta	protein-coding	8.212	2.489	0.927	3.311	1.239	0.971	3.703	4.064	2.297	3.242	1.009	1.409	2.270	2.412	5.090	7.690	6.903	3.543	5.139	2.488	1.963	7.135	4.342	3.295	13.182
11192	chr5	37308274	37314266	+	0	NA	intron (NM_021292, intron 14 of 20)	MLT1B|LTR|ERVL-MaLR	25611	NM_021292	59056	Mm.479678	NM_021292	ENSMUSG00000029122	Evc	-	Ellis van Creveld gene syndrome	protein-coding	0.273	1.181	0.447	0.432	0.160	0.082	0.261	0.215	0.352	0.192	0.254	0.183	0.128	0.148	nan	0.521	nan	nan	2.097	1.299	0.977	3.641	0.549	0.433	0.402
2779	chr11	100458653	100461756	+	0	NA	Intergenic	Intergenic	12578	NM_172565	217194	Mm.183320	NM_172565	ENSMUSG00000048732	Klhl11	BC011167	kelch-like 11	protein-coding	0.807	9.596	7.250	1.123	0.515	0.372	0.728	0.456	0.753	0.956	0.703	0.518	0.269	0.418	0.625	0.795	nan	0.728	0.681	nan	1.200	0.730	nan	nan	0.457
2139	chr11	49056401	49066724	+	0	NA	intron (NM_001145164, intron 1 of 1)	Lx9|LINE|L1	2650	NM_001145164	100039796	Mm.482363	NM_001145164	ENSMUSG00000078921	Tgtp2	OTTMUSG00000005537|TGTP	T cell specific GTPase 2	protein-coding	8.903	13.689	5.560	8.277	4.884	2.954	6.277	7.090	5.413	6.916	6.217	3.336	6.751	9.164	8.183	9.708	6.444	8.060	4.408	3.515	2.855	nan	nan	2.592	7.552
5573	chr15	93103174	93107158	+	0	NA	Intergenic	Lx7|LINE|L1	169918	NM_001033275	223827	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	5.102	9.173	3.198	5.620	3.092	2.124	4.262	10.423	4.434	5.844	3.670	2.950	7.262	6.943	6.721	6.740	5.241	6.502	3.524	2.164	2.311	4.485	3.059	3.127	6.044
768	chr1	157044292	157049856	+	0	NA	Intergenic	Intergenic	61576	NM_001305059	73435	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	6.400	2.830	1.203	1.753	0.931	0.490	7.298	5.400	3.449	2.872	0.974	1.584	7.579	5.024	7.045	11.221	7.841	5.059	nan	0.781	0.749	1.491	nan	1.341	6.625
7924	chr2	3629158	3649949	+	0	NA	Intergenic	Intergenic	-73905	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	nan	10.276	4.162	3.009	1.471	0.873	1.862	3.323	2.523	2.583	2.365	2.268	1.849	2.102	2.845	3.277	2.636	2.738	1.845	2.081	1.262	2.303	2.130	1.504	2.903
3877	chr13	22142123	22143458	+	0	NA	Intergenic	Intergenic	36792	NM_145849	632534	Mm.479517	NM_145849	ENSMUSG00000095916	Vmn1r191	V1rh15	vomeronasal 1 receptor 191	protein-coding	5.056	10.332	4.466	3.986	2.185	1.715	1.100	2.784	3.416	3.782	2.674	1.984	2.966	5.147	4.590	3.805	nan	4.605	2.945	1.856	1.153	2.026	1.788	1.312	5.361
1636	chr10	94722431	94731082	+	0	NA	intron (NM_029852, intron 4 of 15)	intron (NM_029852, intron 4 of 15)	37966	NM_029852	77048	Mm.296971	NM_029852	ENSMUSG00000020024	Cep83	2600001G24Rik|4921537D05Rik|5730513H21Rik|Ccdc41	centrosomal protein 83	protein-coding	10.677	3.291	1.360	7.580	6.782	3.434	6.714	1.855	6.721	7.325	nan	4.918	5.357	5.932	6.775	5.558	6.928	10.638	nan	2.371	1.576	nan	1.790	1.422	10.144
13011	chr7	25934218	25941719	+	0	NA	Intergenic	MYSERV6-int|LTR|ERVK	40310	NM_009999	13088	Mm.218749	NM_009999	ENSMUSG00000030483	Cyp2b10	Cyp2b|Cyp2b20|p16	cytochrome P450, family 2, subfamily b, polypeptide 10	protein-coding	0.509	1.433	0.513	0.498	0.486	0.171	0.454	4.015	0.500	0.613	0.452	0.322	0.795	1.824	0.534	0.563	0.411	0.622	6.828	6.018	4.176	7.130	6.971	4.862	0.684
2491	chr11	77302660	77315815	+	0	NA	intron (NM_177710, intron 1 of 14)	B1_Mur1|SINE|Alu	-39043	NM_001291190	237860	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot homolog 2 (Drosophila)	protein-coding	nan	3.590	0.887	5.366	1.915	1.439	nan	3.449	2.454	4.734	2.258	1.650	2.059	nan	nan	nan	2.159	3.864	2.946	1.516	nan	4.441	1.733	2.019	4.338
13180	chr7	52688833	52691778	+	0	NA	Intergenic	RLTR19-int|LTR|ERVK	-674589	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	9.021	6.965	4.191	6.711	6.519	2.769	8.992	11.809	4.491	7.840	5.986	3.317	8.463	12.179	9.656	10.360	7.176	7.914	4.651	5.625	3.488	4.992	5.993	3.552	13.111
11958	chr5	147864743	147871752	+	0	NA	intron (NM_025624, intron 2 of 5)	intron (NM_025624, intron 2 of 5)	7619	NM_025624	66537	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	3.565	9.451	5.315	3.260	3.765	2.358	3.660	3.259	nan	3.068	1.020	0.794	3.584	4.086	4.460	nan	3.293	4.343	1.130	1.027	0.604	0.810	0.925	0.884	nan
7730	chr19	34792857	34797863	+	0	NA	Intergenic	(TCC)n|Simple_repeat|Simple_repeat	25413	NR_029783	723826		NR_029783	ENSMUSG00000065594	Mir107	Mirn107|mir-107|mmu-mir-107	microRNA 107	ncRNA	nan	0.644	0.446	1.472	1.989	1.081	5.538	7.074	1.715	1.973	1.122	1.258	3.322	5.184	4.712	3.557	4.955	4.079	0.972	1.013	0.315	1.013	2.115	1.149	2.494
12357	chr6	83365969	83369886	+	0	NA	3' UTR (NM_183138, exon 11 of 11)	3' UTR (NM_183138, exon 11 of 11)	18443	NM_175277	78653	Mm.391470	NM_175277	ENSMUSG00000045160	Bola3	1810056O20Rik	bolA-like 3 (E. coli)	protein-coding	3.476	4.290	1.993	2.762	1.715	1.557	4.498	3.463	2.671	3.243	1.884	1.573	4.927	3.808	3.537	5.414	3.819	4.028	nan	1.740	1.566	1.417	1.855	1.605	3.535
6971	chr17	95162769	95164165	+	0	NA	Intergenic	Intergenic	298549	NM_001024731	100044193		NM_001024731	ENSMUSG00000095193	Gm20939	-	predicted gene, 20939	protein-coding	5.297	1.754	0.902	1.956	3.250	1.755	2.791	1.777	3.954	3.360	0.742	0.816	5.082	4.213	3.027	2.958	4.033	4.692	0.564	0.564	0.439	0.262	0.807	0.946	4.142
15069	chr9	50505439	50511147	+	0	NA	Intergenic	RLTR33|LTR|ERVK	-3488	NR_040714	69631	Mm.414996	NR_040714	ENSMUSG00000101304	Plet1os	2310014F07Rik	placenta expressed transcript 1, opposite strand	ncRNA	4.517	0.732	0.383	4.156	1.308	0.647	2.468	5.867	4.100	6.679	2.508	2.208	6.654	7.388	nan	6.635	3.726	5.317	2.076	1.926	1.396	nan	1.717	0.993	8.164
10314	chr4	100916333	100918393	+	0	NA	intron (NM_198037, intron 3 of 26)	intron (NM_198037, intron 3 of 26)	140684	NM_198037	320508	Mm.151962	NM_198037	ENSMUSG00000028532	Cachd1	1190007F10Rik|AI852726|B430218L07Rik|Vwcd1|mKIAA1573	cache domain containing 1	protein-coding	4.506	3.788	2.079	3.203	3.467	2.201	1.418	3.495	3.250	3.775	2.630	0.973	2.542	3.580	nan	2.831	2.103	3.920	0.887	2.300	1.433	1.696	1.031	1.095	3.447
12385	chr6	86504851	86508224	+	0	NA	Intergenic	Intergenic	-18310	NR_040292	381792	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	5.240	1.347	1.145	3.219	5.891	5.414	9.638	4.422	6.189	5.279	4.060	2.017	7.407	9.586	5.378	7.688	7.819	4.867	nan	1.403	2.077	0.788	1.580	1.840	4.891
4976	chr14	121589333	121591491	+	0	NA	intron (NM_001347596, intron 38 of 52)	intron (NM_001347596, intron 38 of 52)	-85158	NM_053079	56643	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	5.034	0.882	0.504	6.265	3.135	1.457	4.282	9.312	5.662	6.098	2.224	2.633	7.173	10.012	9.637	9.497	3.974	9.037	6.567	2.862	1.572	7.850	4.471	2.607	8.002
14768	chr8	126771089	126782766	+	0	NA	Intergenic	Intergenic	168994	NM_024214	67952	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding	3.911	nan	0.589	3.609	3.559	1.847	nan	6.770	2.995	3.789	1.427	1.177	7.093	6.219	nan	7.659	5.224	nan	nan	0.981	0.842	nan	1.260	nan	7.258
338	chr1	78288064	78289977	+	0	NA	Intergenic	Intergenic	-21326	NM_001004173	433323	Mm.276248	NM_001004173	ENSMUSG00000032908	Sgpp2	SPPase2|Spp2	sphingosine-1-phosphate phosphotase 2	protein-coding	5.553	0.478	0.069	2.985	3.290	2.815	2.884	2.628	3.306	3.869	0.266	0.314	8.613	5.728	4.273	8.098	4.965	nan	nan	nan	0.373	0.205	nan	0.245	4.913
5478	chr15	81721366	81724604	+	0	NA	intron (NM_001146174, intron 2 of 15)	intron (NM_001146174, intron 2 of 15)	6934	NM_011241	19387	Mm.270975	NM_011241	ENSMUSG00000022391	Rangap1	C79654|Fug1|mKIAA1835	RAN GTPase activating protein 1	protein-coding	6.131	nan	0.659	2.133	3.264	2.687	8.218	9.836	2.866	nan	nan	1.050	7.310	5.934	5.077	4.331	7.262	4.046	0.945	0.691	1.189	nan	0.781	0.799	3.844
3105	chr11	120120962	120123752	+	0	NA	intron (NM_001164802, intron 10 of 10)	intron (NM_001164802, intron 10 of 10)	23423	NM_001110242	208501	Mm.46699	NM_001110242	ENSMUSG00000078572	Ndufaf8	1810043H04Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 8	protein-coding	2.334	nan	0.281	3.613	0.657	0.132	3.182	3.203	1.845	3.125	0.932	0.632	3.458	5.173	4.535	5.119	1.857	3.967	2.057	nan	1.017	3.786	0.883	0.686	4.934
576	chr1	129914952	129916253	+	0	NA	exon (NM_172485, exon 13 of 28)	exon (NM_172485, exon 13 of 28)	507441	NM_007827	13137	Mm.436759	NM_007827	ENSMUSG00000026401	Cd55b	AI323748|Daf|Daf-TM|Daf2|TM-DAF	CD55 molecule, decay accelerating factor for complement B	protein-coding	4.718	nan	0.060	1.128	1.583	0.616	1.592	1.716	1.891	1.858	2.259	0.382	2.351	3.593	4.015	6.821	4.376	3.759	nan	0.657	0.808	0.513	0.770	0.922	4.933
761	chr1	156801653	156806207	+	0	NA	TTS (NM_001159968)	TTS (NM_001159968)	-35093	NM_028333	72713	Mm.389206	NM_028333	ENSMUSG00000033544	Angptl1	2810039D03Rik|ANG3|ANGPT3|ANGY|ARP1	angiopoietin-like 1	protein-coding	0.467	0.769	0.415	0.307	0.153	0.059	0.284	0.202	nan	0.261	0.380	0.159	0.085	0.208	0.163	nan	0.433	0.473	nan	2.920	1.550	5.391	nan	0.837	0.481
9793	chr3	126399598	126404819	+	0	NA	intron (NM_173451, intron 1 of 1)	intron (NM_173451, intron 1 of 1)	38356	NM_173451	271970	Mm.317021	NM_173451	ENSMUSG00000046561	Arsj	9330196J05Rik|D830047F08	arylsulfatase J	protein-coding	2.826	3.255	2.446	2.001	2.997	2.224	4.431	5.995	3.321	2.179	2.028	2.903	4.068	4.570	2.471	2.092	nan	nan	1.146	1.177	0.704	0.833	1.205	0.898	1.917
1775	chr10	117165682	117169525	+	0	NA	Intergenic	Intergenic	-19129	NM_177798	327826	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	3.262	1.571	1.085	2.456	2.077	2.040	1.418	2.834	2.453	2.505	1.436	1.115	2.074	3.727	2.613	3.639	2.297	4.261	0.761	0.433	0.820	0.674	0.407	0.495	4.159
1415	chr10	70699999	70702251	+	0	NA	Intergenic	Intergenic	-45162	NR_045292	319646	Mm.483039	NR_045291	ENSMUSG00000037747	D630013N20Rik	-	RIKEN cDNA D630013N20 gene	ncRNA	4.766	10.830	5.610	6.139	2.520	1.156	3.795	4.351	1.955	4.641	2.977	2.503	2.918	3.770	5.187	5.832	4.125	4.889	4.226	2.679	2.233	4.482	3.105	3.072	8.390
15007	chr9	44005978	44008900	+	0	NA	Intergenic	RMER15-int|LTR|ERVL	-35945	NM_009382	21838	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding	4.237	1.325	1.139	2.579	1.860	1.386	4.300	5.711	2.463	1.981	3.343	2.545	4.150	4.378	3.674	3.637	4.310	4.182	0.854	0.510	0.878	nan	1.087	0.820	3.128
2334	chr11	66810783	66813377	+	0	NA	Intergenic	Intergenic	-99911	NM_178656	193003	Mm.440256	NM_178656	ENSMUSG00000048070	Pirt	A530088H08Rik	phosphoinositide-interacting regulator of transient receptor potential channels	protein-coding	3.493	0.479	0.414	2.445	1.953	0.546	4.033	3.798	4.007	3.547	0.598	2.219	4.248	4.499	4.410	5.876	2.548	4.991	5.923	3.614	1.583	6.346	6.046	3.740	4.149
1078	chr10	6893477	6900772	+	0	NA	intron (NM_001347225, intron 8 of 8)	intron (NM_001347225, intron 8 of 8)	83157	NM_001347225	320495	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	3.875	0.481	0.426	3.681	4.201	2.283	5.111	0.537	5.063	7.360	1.487	0.667	3.901	5.148	4.577	7.579	5.979	6.050	0.516	0.700	0.938	0.482	0.484	0.486	6.885
13538	chr7	109390027	109400498	+	0	NA	intron (NM_054103, intron 1 of 13)	intron (NM_054103, intron 1 of 13)	43791	NM_054103	117229	Mm.389950	NM_054103	ENSMUSG00000031027	Stk33	4921505G21Rik|AW061264	serine/threonine kinase 33	protein-coding	9.026	9.612	4.595	9.132	7.412	4.696	6.058	7.294	4.982	6.894	6.200	2.673	5.480	9.695	6.879	6.911	6.416	7.868	nan	3.050	2.056	2.166	2.468	2.207	9.966
12295	chr6	67480213	67486432	+	0	NA	intron (NM_144548, intron 3 of 10)	intron (NM_144548, intron 3 of 10)	8533	NM_144548	209590	Mm.221227	NM_144548	ENSMUSG00000049093	Il23r	IL-23R	interleukin 23 receptor	protein-coding	7.086	1.159	0.697	7.356	7.087	3.497	0.662	2.782	5.185	7.136	11.892	4.413	2.872	8.342	6.690	4.735	2.250	7.539	0.498	0.840	0.589	0.375	0.491	0.208	9.886
2530	chr11	79884788	79885833	+	0	NA	Intergenic	RSINE1|SINE|B4	77077	NM_144826	216987	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	3.859	6.990	6.989	1.777	2.719	2.397	nan	1.421	2.652	2.578	0.915	0.934	1.349	3.001	nan	1.642	2.301	2.322	0.978	2.709	nan	0.595	0.912	1.092	1.251
1512	chr10	80608382	80610230	+	0	NA	promoter-TSS (NR_105877)	promoter-TSS (NR_105877)	46	NR_105877	102465550		NR_105877	ENSMUSG00000099283	Mir6912	Gm27990|mmu-mir-6912	microRNA 6912	ncRNA	1.981	2.235	0.477	2.398	3.452	2.611	3.109	4.257	2.284	2.590	4.574	3.871	1.359	4.002	nan	2.100	1.355	2.176	nan	0.785	0.651	0.517	0.425	0.409	2.185
2956	chr11	112991807	112995426	+	0	NA	Intergenic	MER2B|DNA|TcMar-Tigger	-168488	NR_130164	76393	Mm.86795	NR_130164		1700012H19Rik	-	RIKEN cDNA 1700012H19 gene	ncRNA	2.652	1.337	0.510	nan	0.775	0.613	4.107	3.540	nan	nan	2.669	1.212	3.967	3.536	4.751	6.347	3.095	nan	1.123	0.538	0.685	nan	1.215	0.680	6.659
8056	chr2	27568172	27577956	+	0	NA	Intergenic	Intergenic	57917	NM_080848	140858	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	3.733	1.869	0.698	3.043	1.719	0.696	2.875	6.058	nan	2.557	6.507	2.645	1.641	2.191	2.302	4.676	2.567	2.329	1.284	0.857	0.669	1.811	0.863	0.434	5.164
14336	chr8	74667825	74672260	+	0	NA	Intergenic	Intergenic	-203132	NM_027837	71597	Mm.158735	NM_027837	ENSMUSG00000031621	Isx	9130012O13Rik|Pix-1	intestine specific homeobox	protein-coding	7.981	nan	0.831	3.769	7.819	6.126	6.540	9.619	nan	4.852	2.954	1.428	5.558	9.630	6.981	7.734	7.552	5.620	1.288	1.329	1.181	nan	0.998	0.677	7.867
9439	chr3	88244600	88253403	+	0	NA	intron (NM_021375, intron 1 of 9)	B4A|SINE|B4	5683	NM_021375	58176	Mm.103777	NM_021375	ENSMUSG00000103766	Rhbg	-	Rhesus blood group-associated B glycoprotein	protein-coding	4.235	2.237	1.190	2.921	3.893	2.749	4.930	6.395	3.604	3.511	2.167	2.549	5.395	6.252	3.509	3.574	4.461	4.150	nan	1.310	1.278	1.189	1.375	1.084	3.383
12186	chr6	39321679	39323867	+	0	NA	Intergenic	MER74A|LTR|ERVL	54934	NM_028123	72144	Mm.482167	NM_028123	ENSMUSG00000029924	Slc37a3	2610507O21Rik|AU044904	solute carrier family 37 (glycerol-3-phosphate transporter), member 3	protein-coding	7.493	1.622	0.986	3.595	6.884	4.454	10.241	8.192	4.609	4.492	5.211	3.119	4.447	8.558	4.602	5.592	6.826	3.849	nan	4.018	1.830	nan	nan	2.929	4.848
10678	chr4	134229050	134234695	+	0	NA	intron (NM_001081047, intron 14 of 20)	B3|SINE|B2	-4489	NM_177866	329954	Mm.79072	NM_177866	ENSMUSG00000048003	Catsper4	4933412L05	cation channel, sperm associated 4	protein-coding	nan	0.868	0.569	2.126	1.776	0.762	2.096	1.706	nan	2.126	1.047	0.772	1.182	2.323	1.493	1.584	0.457	nan	2.633	0.957	1.109	4.340	nan	1.146	2.871
2946	chr11	109576929	109584520	+	0	NA	intron (NM_145940, intron 8 of 12)	intron (NM_145940, intron 8 of 12)	30665	NM_145940	52639	Mm.35817	NM_145940	ENSMUSG00000041895	Wipi1	4930533H01Rik|AW411817|D11Ertd498e	WD repeat domain, phosphoinositide interacting 1	protein-coding	2.648	1.383	0.447	nan	1.455	0.645	5.322	6.700	nan	nan	1.917	1.083	2.708	3.674	5.363	5.911	4.128	nan	1.619	1.132	0.834	nan	0.587	0.336	4.000
328	chr1	76019831	76024520	+	0	NA	Intergenic	Intergenic	-466958	NR_038012	620079	Mm.378379	NR_038012	ENSMUSG00000100553	Gm17751	-	predicted gene, 17751	ncRNA	3.006	0.374	0.334	1.193	1.752	0.809	4.615	1.705	3.326	4.039	3.216	1.141	4.396	3.186	5.059	10.113	5.410	3.979	nan	nan	0.183	0.527	nan	0.114	3.859
10732	chr4	136389400	136392793	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-32428	NM_001285482	15552	Mm.40573	NM_008309	ENSMUSG00000070687	Htr1d	5-HT-1D|5-HT1D|AI853647|Gpcr14|Htr1db	5-hydroxytryptamine (serotonin) receptor 1D	protein-coding	nan	0.914	0.117	0.979	0.281	0.074	0.700	1.985	nan	5.224	1.241	2.821	0.689	0.717	1.134	0.949	0.299	nan	6.193	1.799	2.763	8.268	5.651	6.821	2.755
9568	chr3	96574977	96577788	+	0	NA	Intergenic	Intergenic	-9581	NR_040409	100038464	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	ENSMUSG00000074398|OTTMUSG00000021867	predicted gene 15441	ncRNA	2.813	0.970	0.763	1.589	1.469	0.637	4.289	2.100	2.757	2.347	nan	0.849	5.790	4.383	3.487	4.266	3.881	3.685	0.930	1.288	0.547	0.704	0.789	0.470	1.605
8104	chr2	30935805	30946258	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-11970	NM_133673	30934	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	1.936	12.186	6.310	2.539	1.156	0.750	1.555	0.947	nan	1.409	1.133	0.896	0.702	1.152	1.404	1.696	1.703	1.405	1.111	1.224	0.810	0.934	0.766	0.533	2.217
6682	chr17	46918362	46920612	+	0	NA	intron (NM_008938, intron 1 of 2)	intron (NM_008938, intron 1 of 2)	9002	NM_008938	19133	Mm.291370	NM_008938	ENSMUSG00000023978	Prph2	AOFMD|AVMD|Nmf193|PRPH|RP7|Rd-2|Rd2|Rds|Tspan22|rds	peripherin 2	protein-coding	7.701	8.605	3.246	5.678	4.104	1.406	6.913	5.324	4.772	5.784	5.156	2.341	5.049	9.017	7.795	9.026	5.912	6.067	3.225	3.178	1.645	3.276	3.090	1.810	9.621
6144	chr16	58501250	58503712	+	0	NA	intron (NM_018784, intron 2 of 10)	RLTR25B|LTR|ERVK	20831	NM_018784	54613	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	8.059	5.443	3.958	4.578	8.088	5.311	5.405	4.525	3.511	4.219	2.416	1.809	3.541	6.141	5.296	6.033	6.566	4.427	nan	5.125	4.850	2.176	3.707	4.171	5.306
10241	chr4	87394293	87397896	+	0	NA	Intergenic	Intergenic	-165554	NM_172426	76376	Mm.490487	NM_172426	ENSMUSG00000037996	Slc24a2	2810021B17Rik|6330417K15Rik|AI847460|Nckx2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	protein-coding	3.539	nan	0.385	1.500	1.387	0.797	1.903	nan	4.806	5.471	1.421	0.900	2.992	1.385	2.156	3.854	2.380	3.407	0.777	nan	0.412	2.115	0.768	0.796	3.433
628	chr1	134967380	134970594	+	0	NA	intron (NM_001278115, intron 2 of 6)	ID_B1|SINE|B4	6422	NM_001278115	67196	Mm.284587	NM_026024	ENSMUSG00000026429	Ube2t	2700084L22Rik|C80607	ubiquitin-conjugating enzyme E2T	protein-coding	3.216	2.519	0.790	3.949	1.465	1.050	2.734	2.242	2.190	3.021	1.023	0.787	2.818	3.398	2.784	5.719	1.966	3.335	0.953	0.494	0.647	1.231	0.445	0.132	5.744
1223	chr10	40020346	40022897	+	0	NA	intron (NM_144821, intron 1 of 3)	intron (NM_144821, intron 1 of 3)	3647	NM_144821	215929	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	7.895	7.639	3.236	8.257	3.694	2.851	6.407	5.745	4.534	9.904	7.090	4.811	6.014	7.828	8.212	9.152	6.834	7.888	5.579	2.014	3.389	5.387	2.655	4.091	14.137
7525	chr19	7625989	7627815	+	0	NA	intron (NM_025731, intron 4 of 5)	MYSERV6-int|LTR|ERVK	14333	NM_025731	66727	Mm.116803	NM_025731	ENSMUSG00000024973	Hrasls5	1700055A14Rik|1700086E08Rik|4921526K24Rik|HRSL5|iNAT	HRAS-like suppressor family, member 5	protein-coding	3.263	1.000	0.713	2.201	1.344	0.600	5.276	3.238	2.846	2.313	0.764	1.032	3.025	4.347	2.659	4.349	4.241	3.417	2.391	1.060	0.176	2.447	1.728	0.887	6.033
4014	chr13	41073379	41074807	+	0	NA	intron (NM_001145802, intron 1 of 11)	intron (NM_001145802, intron 1 of 11)	-3628	NM_008547	17152	Mm.8149	NM_008547	ENSMUSG00000021363	Mak	A930010O05Rik	male germ cell-associated kinase	protein-coding	8.236	nan	1.089	3.469	2.315	2.802	4.590	5.374	4.250	4.460	3.720	3.786	4.465	4.790	4.137	4.836	3.385	3.871	1.743	2.542	1.626	2.035	1.784	1.419	4.472
4803	chr14	68280978	68282735	+	0	NA	Intergenic	Intergenic	-156852	NM_008691	18040	Mm.242832	NM_008691	ENSMUSG00000022054	Nefm	NF-M|NF160|NF165|Nef3|Nfm	neurofilament, medium polypeptide	protein-coding	4.705	0.727	0.959	2.459	2.615	1.496	4.160	2.864	3.345	3.949	1.730	1.869	5.313	4.359	3.774	6.510	2.460	4.094	0.776	nan	1.056	0.466	0.522	0.683	5.896
4271	chr13	83710851	83715306	+	0	NA	Intergenic	Intergenic	-15028	NR_015561	320203	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik	RIKEN cDNA C130071C03 gene	ncRNA	4.153	9.702	6.135	5.001	1.703	1.029	1.348	1.114	2.806	2.851	2.081	0.953	1.622	2.717	2.653	2.709	2.272	3.705	1.148	1.232	0.715	1.531	0.582	0.534	1.596
13657	chr7	121442558	121444025	+	0	NA	intron (NM_001081327, intron 1 of 1)	intron (NM_001081327, intron 1 of 1)	50995	NM_001081327	195646	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	2.451	2.237	1.537	1.524	1.186	0.886	1.126	1.991	2.456	2.051	0.750	0.371	2.646	5.281	1.995	1.535	2.406	2.270	0.804	1.752	0.640	0.582	0.757	0.691	1.364
5003	chr15	3197618	3204315	+	0	NA	Intergenic	URR1A|DNA|hAT-Charlie	-69801	NM_001042613	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	8.274	0.824	0.724	5.032	3.062	1.876	9.243	11.642	4.787	5.197	0.739	3.021	10.951	7.730	7.087	5.885	8.645	6.317	0.887	0.919	0.429	0.587	0.553	0.581	3.775
733	chr1	153105254	153107051	+	0	NA	intron (NM_175460, intron 8 of 10)	ID_B1|SINE|B4	80295	NM_008485	16782	Mm.329272	NM_008485	ENSMUSG00000026479	Lamc2	AA589349	laminin, gamma 2	protein-coding	3.118	4.340	2.127	2.501	2.165	0.822	3.334	2.552	3.711	3.169	4.158	1.151	4.142	4.252	3.995	4.846	3.184	4.856	nan	0.799	0.409	0.853	nan	0.309	2.895
6249	chr16	94821713	94824850	+	0	NA	3' UTR (NM_001025590, exon 3 of 3)	3' UTR (NM_001025590, exon 3 of 3)	33409	NM_001025590	16522	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding	6.046	3.147	2.528	2.724	4.499	1.759	5.104	5.543	3.200	3.804	3.220	2.269	4.435	6.185	4.266	5.620	4.267	5.186	2.020	2.022	1.389	0.804	2.332	1.226	3.780
11096	chr5	30025298	30026933	+	0	NA	Intergenic	Intergenic	13001	NM_031168	16193	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	2.665	0.380	0.249	0.894	2.336	0.940	4.700	6.602	3.958	2.237	8.050	4.343	2.493	4.034	3.350	2.164	1.823	2.478	0.358	0.264	0.375	0.299	0.645	0.520	1.916
7711	chr19	32578615	32581031	+	0	NA	Intergenic	Intergenic	-15892	NM_001201470	23972	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	nan	7.297	6.419	nan	0.582	0.180	0.555	1.409	0.672	0.471	nan	0.246	0.336	0.740	0.509	0.635	1.091	0.524	nan	0.567	0.387	0.493	nan	0.200	0.662
14144	chr8	35684381	35688205	+	0	NA	Intergenic	MTC|LTR|ERVL-MaLR	-97273	NR_040376	100504714	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	2.832	2.024	1.406	1.712	2.928	1.896	3.200	7.215	2.974	2.948	2.077	2.324	3.251	4.353	3.910	4.212	3.762	3.510	3.598	3.387	2.343	6.477	2.898	1.612	nan
12130	chr6	31320886	31323934	+	0	NA	intron (NR_040261, intron 3 of 4)	intron (NR_040261, intron 3 of 4)	76363	NR_040300	100503869	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845|OTTMUSG00000014733	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	8.220	0.768	0.610	4.743	4.151	2.388	12.503	5.176	4.144	4.714	4.624	2.360	9.106	8.645	5.443	8.699	5.843	6.981	nan	1.184	0.704	2.817	1.089	1.030	5.659
11305	chr5	66533852	66548536	+	0	NA	intron (NM_001310626, intron 2 of 15)	intron (NM_001310626, intron 2 of 15)	77623	NM_009686	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	5.288	1.599	1.056	4.201	4.176	3.292	6.171	6.193	4.820	6.622	4.534	3.092	5.833	8.072	6.357	6.660	5.101	5.904	0.887	1.320	1.277	nan	0.846	0.862	5.852
8425	chr2	90404857	90407019	+	0	NA	Intergenic	(GGAA)n|Simple_repeat|Simple_repeat	5298	NM_146263	258330	Mm.330392	NM_146263	ENSMUSG00000082980	Olfr1274-ps	GA_x5J8B7W2BV0-3116-4045|MOR228-4|MOR228-5|Olfr1274	olfactory receptor 1274, pseudogene	protein-coding	7.194	1.595	0.670	3.921	2.050	0.849	3.966	9.579	3.253	2.571	4.566	2.941	5.916	3.880	4.104	5.734	4.534	6.343	2.838	1.540	1.017	4.743	1.664	0.838	6.152
630	chr1	134978788	134982078	+	0	NA	Intergenic	MTD-int|LTR|ERVL-MaLR	17868	NM_001278115	67196	Mm.284587	NM_026024	ENSMUSG00000026429	Ube2t	2700084L22Rik|C80607	ubiquitin-conjugating enzyme E2T	protein-coding	3.081	15.561	5.803	5.040	3.087	1.829	3.694	4.705	3.164	4.661	1.436	1.384	5.399	5.889	3.839	7.990	2.893	5.804	0.708	0.892	1.151	1.560	1.002	1.068	5.378
8980	chr2	165468583	165472490	+	0	NA	intron (NM_054055, intron 1 of 12)	intron (NM_054055, intron 1 of 12)	2661	NM_054055	114644	Mm.250738	NM_054055	ENSMUSG00000018459	Slc13a3	NaDC-3|NaDC3|SDCT2	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	protein-coding	5.389	0.810	0.474	2.705	1.927	0.726	4.361	9.050	2.975	3.350	6.366	3.262	5.837	4.470	4.322	7.638	4.947	nan	3.536	2.998	1.954	4.771	2.318	1.699	9.161
5001	chr14	124590835	124593095	+	0	NA	intron (NM_207667, intron 1 of 4)	ORR1A2-int|LTR|ERVL-MaLR	85162	NM_207667	14169	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|mFHF-4(1B)	fibroblast growth factor 14	protein-coding	0.151	nan	0.347	0.188		0.111	0.241	0.130	0.162	0.366	0.076	0.133	0.097	0.224	0.092	0.241	0.033	0.231	10.593	4.149	3.013	10.739	10.392	9.254	0.493
4947	chr14	106339932	106341453	+	0	NA	Intergenic	L1_Rod|LINE|L1	145828	NR_045938	73631	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	2.796	0.387	0.433	1.891	1.900	0.574	2.258	2.724	2.445	2.912	1.077	0.848	2.718	3.565	3.357	4.359	3.297	1.903	0.599	0.986	0.571	1.194	0.781	0.664	2.390
12828	chr6	142694935	142697557	+	0	NA	intron (NM_001310143, intron 3 of 38)	intron (NM_001310143, intron 3 of 38)	6028	NM_021041	20928	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	7.181	1.357	1.244	2.968	3.653	2.445	7.836	4.998	3.647	4.185	2.657	1.436	6.596	6.684	6.386	6.637	6.765	5.445	nan	2.321	1.399	1.632	1.262	0.962	5.471
11132	chr5	32485148	32486789	+	0	NA	exon (NM_172707, exon 6 of 8)	exon (NM_172707, exon 6 of 8)	26998	NM_172707	19046	Mm.241931	NM_172707	ENSMUSG00000014956	Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding	2.056	0.575	0.591	nan	3.193	1.337	4.147	3.135	2.749	3.028	3.920	1.192	2.898	4.221	4.470	4.172	2.058	5.012	3.462	0.967	0.685	2.696	2.839	2.050	3.256
9605	chr3	101309575	101314842	+	0	NA	Intergenic	Intergenic	-24269	NM_013486	12481	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	4.857	0.682	0.335	3.013	2.474	1.773	7.660	6.338	4.296	4.823	nan	1.520	6.880	5.546	5.622	5.305	4.029	6.117	1.439	1.060	1.043	2.214	1.548	1.246	8.251
11593	chr5	115017461	115021688	+	0	NA	intron (NM_029012, intron 1 of 10)	B2_Mm2|SINE|B2	8050	NM_029012	74585	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	3.157	1.659	0.255	4.298	1.352	0.993	2.624	3.692	1.820	4.542	0.578	0.576	3.172	5.380	3.735	4.179	2.890	4.476	nan	nan	1.785	4.151	nan	2.748	7.376
7824	chr19	46420733	46424828	+	0	NA	intron (NM_001025391, intron 2 of 11)	intron (NM_001025391, intron 2 of 11)	25884	NM_015752	24069	Mm.41210	NM_015752	ENSMUSG00000025231	Sufu	Su(fu)	suppressor of fused homolog (Drosophila)	protein-coding	3.484	2.720	1.064	nan	2.965	2.433	6.278	6.375	2.370	4.248	3.406	2.899	4.413	6.669	4.699	6.988	6.655	nan	2.154	1.450	2.308	3.302	2.939	3.538	8.319
3263	chr12	32240882	32249749	+	0	NA	Intergenic	MLTR14|LTR|ERV1	-36666	NM_001146200	30955	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphoinositide-3-kinase, catalytic, gamma polypeptide	protein-coding	9.887	0.557	0.413	1.990	1.296	1.177	1.261	0.982	1.317	1.775	1.181	0.731	2.635	1.100	2.058	1.391	2.637	4.491	0.641	0.659	0.869	0.497	0.363	0.431	12.146
9833	chr3	137614006	137616725	+	0	NA	Intergenic	Intergenic	-8307	NM_030143	73284	Mm.250841	NM_030143	ENSMUSG00000046818	Ddit4l	1700037B15Rik|1700108M02Rik|REDD2|RTP801L|Smhs1	DNA-damage-inducible transcript 4-like	protein-coding	5.617	6.187	3.220	3.351	2.851	2.502	6.289	4.959	3.826	4.639	2.152	2.038	4.781	5.863	4.507	5.491	5.774	4.003	4.433	2.416	2.929	2.426	5.024	4.730	5.403
1234	chr10	41169263	41171627	+	0	NA	Intergenic	RMER10A|LTR|ERVL	-98861	NM_199058	140741	Mm.290693	NM_199058	ENSMUSG00000046922	Gpr6	AI852874|Gm233	G protein-coupled receptor 6	protein-coding	7.916	8.158	2.782	7.537	2.390	1.229	4.902	7.471	5.127	6.461	3.735	2.670	5.922	7.601	8.313	9.529	6.166	8.126	4.133	1.488	1.417	4.431	1.821	1.562	11.401
14235	chr8	58773052	58777439	+	0	NA	intron (NM_175032, intron 1 of 11)	L1_Mur3|LINE|L1	-74449	NM_001177534	100271928	Mm.484123	NM_001177534		Gm15881	OTTMUSG00000027193	predicted gene 15881	protein-coding	0.962	1.019	0.518	5.172	0.435	0.354	0.604	2.501	1.354	0.857	0.253	0.420	0.583	0.653	0.857	1.087	0.830	3.602	0.539	0.511	0.342	1.263	0.551	0.434	0.769
7368	chr18	69820307	69827692	+	0	NA	Intergenic	Intergenic	-101560	NM_201362	381175	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	3.272	7.896	3.772	2.785	1.737	0.685	1.067	1.134	1.740	1.610	0.951	0.694	0.691	1.358	1.399	1.744	1.206	2.156	0.909	1.110	0.638	1.186	0.702	0.426	1.640
11696	chr5	123598806	123601081	+	0	NA	intron (NM_001347468, intron 18 of 24)	intron (NM_001347468, intron 18 of 24)	-26928	NM_029929	77573	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	4.175	9.213	2.970	4.465	1.833	1.026	3.999	3.411	2.708	3.221	2.192	1.913	2.358	5.534	4.759	4.642	nan	3.698	2.799	2.262	1.198	2.837	2.431	1.906	5.221
4108	chr13	49196122	49200407	+	0	NA	Intergenic	Intergenic	10717	NM_013610	18081	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	nan	0.620	0.183	nan	0.499	0.202	0.907	1.263	0.631	0.673	0.521	0.373	0.408	0.669	0.785	1.136	0.674	nan	1.411	nan	0.792	3.752	1.753	0.861	nan
8845	chr2	154465989	154468632	+	0	NA	intron (NM_009823, intron 1 of 10)	RMER10B|LTR|ERVL	30826	NM_009823	12396	Mm.29914	NM_009823	ENSMUSG00000038533	Cbfa2t2	A430091M07|C330013D05Rik|Cbfa2t2h|MTGR1	core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	protein-coding	6.684	0.789	0.678	2.830	3.421	2.872	8.999	6.897	2.745	3.854	0.742	0.969	5.505	6.031	5.369	6.412	6.942	5.086	nan	1.396	1.236	0.581	2.267	2.674	7.159
12349	chr6	82963030	82968000	+	0	NA	intron (NM_033079, intron 2 of 9)	Lx2B2|LINE|L1	18593	NM_033079	110958	Mm.100652	NM_033079	ENSMUSG00000030041	M1ap	D6Mm5e	meiosis 1 associated protein	protein-coding	6.338	3.476	2.059	3.492	4.075	2.032	6.926	6.212	1.826	2.736	2.658	2.010	6.996	9.934	4.051	4.006	5.622	3.643	0.812	1.558	1.008	0.715	0.893	0.361	2.710
13229	chr7	56651856	56654789	+	0	NA	Intergenic	Intergenic	413551	NM_021879	18431	Mm.137052	NM_021879	ENSMUSG00000030450	Oca2	D7H15S12|D7Icr28RN|D7Nic1|p|p<cas>	oculocutaneous albinism II	protein-coding	4.028	2.172	1.147	6.349	3.019	2.437	0.796	3.831	3.435	5.035	2.498	1.273	7.587	5.001	3.796	4.522	1.527	4.054	5.820	2.108	1.871	6.119	3.319	2.386	3.528
14126	chr8	34905599	34910900	+	0	NA	intron (NM_175091, intron 3 of 26)	intron (NM_175091, intron 3 of 26)	57441	NM_175091	21951	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	3.228	1.170	0.466	3.156	1.219	0.739	3.336	5.161	2.148	2.671	2.996	2.236	4.311	5.251	5.355	5.280	2.211	4.092	0.717	0.665	0.793	1.855	1.046	0.659	5.659
15125	chr9	57542502	57544684	+	0	NA	TTS (NM_025837)	TTS (NM_025837)	6065	NM_001166364	78323	Mm.25814	NM_175273	ENSMUSG00000032305	Fam219b	2310046O06Rik|AI594866	family with sequence similarity 219, member B	protein-coding	1.189	1.059	0.490	2.252	0.737	0.359	0.770	1.667	1.094	1.351	0.336	0.410	0.509	1.098	0.988	1.454	0.772	1.630	3.669	2.576	1.051	3.575	5.717	3.054	1.904
15774	chrX	96330481	96337656	+	0	NA	intron (NM_001310755, intron 3 of 10)	L1MEd|LINE|L1	33851	NM_001310754	245525	Mm.166749	NM_172931	ENSMUSG00000045802	Hsf3	B230358A15Rik|HSF 3|HSTF 3	heat shock transcription factor 3	protein-coding	6.130	5.005	1.726	7.197	2.990	1.937	5.136	6.419	3.747	6.595	4.940	2.817	4.882	7.991	6.023	7.437	3.599	6.696	1.808	0.951	0.713	1.172	2.374	1.926	9.924
10961	chr4	151570433	151573503	+	0	NA	intron (NM_001081557, intron 4 of 23)	G-rich|Low_complexity|Low_complexity	289800	NM_001081557	100072	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	2.197	nan	2.197	2.067	2.726	2.156	1.248	4.101	1.848	1.927	0.885	1.532	1.510	1.697	1.300	1.387	1.217	1.589	1.696	1.785	1.982	2.049	1.423	0.958	1.225
1687	chr10	98898108	98899099	+	0	NA	Intergenic	Intergenic	-16549	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	3.711	0.586	0.603	2.343	2.343	0.884	2.167	2.890	2.570	2.742	2.297	0.760	1.745	3.354	3.281	3.995	2.872	4.597	nan	0.530	0.678	nan	0.426	0.273	1.800
7404	chr18	76191863	76193143	+	0	NA	Intergenic	Intergenic	21951	NR_105776	102465184		NR_105776	ENSMUSG00000098276	Mir6358	Gm27830|mmu-mir-6358	microRNA 6358	ncRNA	0.907	nan	0.103	1.680	0.521	0.590	1.518	3.227	1.439	1.486	0.773	0.604	3.741	3.688	3.624	3.492	1.850	2.225	0.909	nan	0.479	1.470	0.268	0.234	2.420
8494	chr2	102978548	102986111	+	0	NA	Intergenic	Intergenic	-80664	NM_001039150	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	nan	1.097	0.460	1.820	0.821	0.231	2.521	6.148	3.009	2.562	8.508	1.692	3.906	3.298	3.568	4.556	3.811	4.342	0.862	0.549	0.275	0.911	1.236	0.956	3.638
1188	chr10	24677617	24679923	+	0	NA	intron (NM_001308327, intron 2 of 24)	intron (NM_001308327, intron 2 of 24)	33389	NM_001308327	18605	Mm.27254	NM_008813	ENSMUSG00000037370	Enpp1	4833416E15Rik|AI428932|C76301|CD203c|E-NPP 1|E-NPP1|Ly-41|M6S1|NPP1|Npps|PC-1|Pca|Pca-1|Pdnp1|ttw|twy	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding	4.176	0.908	0.564	3.015	1.975	1.774	2.812	3.254	3.642	5.355	6.080	1.816	6.165	5.963	4.686	5.870	7.516	3.151	1.089	1.209	0.858	1.854	0.802	0.703	7.967
3142	chr11	121562675	121569112	+	0	NA	intron (NM_029878, intron 17 of 38)	Lx8|LINE|L1	-46551	NM_178763	319530	Mm.11395	NM_178763	ENSMUSG00000039238	Zfp750	A030007D23Rik|Znf750	zinc finger protein 750	protein-coding	4.671	nan	1.012	5.371	2.380	1.031	nan	4.229	4.132	6.112	3.362	1.798	4.219	5.831	4.963	6.630	2.870	5.335	0.991	nan	0.705	1.056	0.809	0.680	5.974
7455	chr19	3640628	3651867	+	0	NA	intron (NM_008513, intron 5 of 22)	intron (NM_008513, intron 5 of 22)	40317	NM_008513	16973	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	1.740	1.061	0.441	2.672	1.046	0.838	3.617	6.579	nan	2.187	1.028	0.937	3.445	3.195	3.078	nan	2.588	3.329	0.728	0.611	0.734	1.919	0.954	0.861	4.448
10595	chr4	131063762	131071085	+	0	NA	Intergenic	Intergenic	-56949	NR_130167	77835	Mm.348412	NR_130167	ENSMUSG00000086262	A930031H19Rik	A930004I12Rik	RIKEN cDNA A930031H19 gene	ncRNA	0.678	0.629	0.231	0.276	0.090		1.690	0.281	0.212	0.246	0.159	0.110	0.616	0.702	nan	2.592	0.376	0.991	3.849	2.690	1.967	6.646	2.077	1.602	1.726
7138	chr18	35909465	35911696	+	0	NA	Intergenic	B3|SINE|B2	-54250	NM_028707	74002	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	2.911	3.566	1.880	1.929	3.299	1.599	2.591	3.274	1.691	1.842	1.663	1.601	1.622	nan	2.409	nan	2.690	2.895	5.119	3.421	5.324	4.523	7.026	8.538	3.255
12635	chr6	117864419	117871156	+	0	NA	intron (NM_001001792, intron 2 of 3)	intron (NM_001001792, intron 2 of 3)	4710	NM_001001792	22685	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	5.773	7.649	3.966	5.059	3.454	2.100	7.737	6.833	3.533	4.557	4.220	2.482	6.519	7.097	7.300	8.362	5.669	6.163	4.351	2.237	1.875	3.876	nan	2.295	6.532
714	chr1	140184304	140193527	+	0	NA	Intergenic	RLTR13D6|LTR|ERVK	-5504	NM_009888	12628	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	8.673	3.440	2.448	nan	3.463	1.946	6.142	3.399	6.810	5.963	1.434	1.512	8.810	6.543	6.863	10.424	8.568	7.132	0.771	0.814	0.594	0.476	0.358	0.300	nan
4364	chr13	104708678	104711993	+	0	NA	intron (NM_026072, intron 11 of 13)	intron (NM_026072, intron 11 of 13)	106618	NM_026072	67285	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	12.638	15.817	4.191	14.931	9.693	7.244	10.429	9.971	9.107	22.697	12.155	7.415	11.207	14.300	13.098	13.740	7.735	15.088	5.864	3.898	4.311	8.768	3.619	5.157	19.299
7293	chr18	61350887	61356146	+	0	NA	intron (NM_133249, intron 1 of 11)	(CAAA)n|Simple_repeat|Simple_repeat	46915	NM_133249	170826	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	nan	nan	0.473	nan	2.429	2.338	7.586	4.610	4.157	4.405	1.704	1.066	9.661	6.494	6.074	6.605	5.278	nan	nan	0.458	0.536	nan	0.419	0.448	nan
11914	chr5	143572403	143585579	+	0	NA	Intergenic	PB1D10|SINE|Alu	30285	NM_026050	67238	Mm.383219	NM_026050	ENSMUSG00000083012	Fam220a	1500026F15Rik|2810453I06Rik|AW047776|Acpin1|Sipar	family with sequence similarity 220, member A	protein-coding	13.352	4.363	1.398	15.300	7.349	4.450	15.993	11.263	nan	15.773	13.495	9.405	11.136	16.348	13.722	nan	10.666	14.102	10.023	4.693	5.315	9.403	6.944	8.021	nan
11429	chr5	91688515	91704652	+	0	NA	Intergenic	Intergenic	70717	NR_045383	73452	Mm.396233	NR_045383	ENSMUSG00000101978	1700063O14Rik	-	RIKEN cDNA 1700063O14 gene	ncRNA	3.304	0.472	0.555	2.070	4.694	3.197	3.808	3.275	5.720	6.465	1.452	2.681	4.418	4.981	4.728	4.160	3.197	5.071	0.703	0.692	0.717	0.782	0.647	0.651	1.968
14821	chr8	129347226	129380411	+	0	NA	Intergenic	Intergenic	100188	NR_144501	102635552		NM_001346808		Gm32856	-	predicted gene, 32856	protein-coding	13.978	12.818	6.726	9.010	10.574	6.757	9.800	13.648	10.327	12.662	8.989	6.269	13.865	16.014	nan	13.917	11.321	nan	nan	3.680	3.306	nan	4.447	nan	nan
5008	chr15	3928421	3930962	+	0	NA	Intergenic	Intergenic	49882	NM_134099	106052	Mm.234191	NM_134099	ENSMUSG00000022184	Fbxo4	1700096C12Rik|AI851261|AW494535|Fbx4	F-box protein 4	protein-coding	6.720	10.508	2.479	9.203	4.168	2.348	7.155	8.423	5.877	10.999	4.363	2.743	9.371	9.364	8.557	7.920	6.518	9.256	4.535	1.457	1.515	4.807	2.776	1.997	8.521
14405	chr8	86534279	86536804	+	0	NA	intron (NM_172912, intron 13 of 28)	intron (NM_172912, intron 13 of 28)	31049	NM_172912	244562	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding	1.975	2.129	0.710	3.654	0.873	1.422	1.261	3.519	1.614	3.430	0.442	0.654	3.697	4.614	4.459	4.351	1.939	5.444	5.358	1.590	2.297	9.785	3.447	4.829	6.891
12283	chr6	65619520	65623040	+	0	NA	intron (NM_001001495, intron 7 of 7)	L1MC|LINE|L1	30882	NM_001001495	414084	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	2.568	2.075	0.527	4.628	2.745	1.608	2.310	4.165	2.072	3.754	0.764	1.511	2.197	5.066	4.986	3.603	1.677	7.425	0.490	0.429	0.897	0.762	0.491	0.422	5.512
14532	chr8	108059815	108062603	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	-472727	NM_010817	17463	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	6.423	1.175	0.641	5.486	6.060	2.657	2.685	8.580	4.697	6.395	3.087	2.173	6.726	12.283	5.756	6.449	5.264	6.463	1.873	1.551	0.760	4.526	2.310	1.457	7.433
11274	chr5	65308849	65312097	+	0	NA	intron (NM_001347358, intron 4 of 24)	(GAA)n|Simple_repeat|Simple_repeat	25166	NM_011258	19687	Mm.148877	NM_011258	ENSMUSG00000029191	Rfc1	140kDa|Alp145|RFC140|Recc1	replication factor C (activator 1) 1	protein-coding	1.124	6.800	5.401	0.776	0.741	0.416	0.629	0.696	1.021	0.750	0.641	0.513	0.547	0.677	0.752	0.712	0.824	1.042	0.642	1.118	1.127	nan	0.886	0.959	0.608
15472	chr9	106723654	106725562	+	0	NA	intron (NM_030730, intron 2 of 21)	RLTR12C|LTR|ERVK	-38656	NM_001286498	21767	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	6.755	6.683	2.128	6.381	3.348	2.005	6.246	6.748	nan	nan	3.336	2.814	4.274	6.275	4.723	6.447	4.901	4.549	4.432	2.675	3.080	4.003	4.538	3.657	8.050
13031	chr7	26620048	26623226	+	0	NA	Intergenic	Intergenic	-9559	NM_134231	171265	Mm.377217	NM_134231	ENSMUSG00000091924	Vmn1r185	V1re12	vomeronasal 1 receptor 185	protein-coding	1.461	1.671	1.048	1.609	1.604	1.189	1.443	2.744	1.610	1.931	6.689	4.879	1.908	2.853	1.537	1.646	1.197	1.301	0.681	0.974	0.540	0.685	0.378	0.211	1.188
4631	chr14	46877577	46882501	+	0	NA	Intergenic	Intergenic	-2926	NM_028966	74480	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	3.146	0.497	0.329	1.932	1.385	0.771	4.572	6.855	2.607	2.189	0.710	0.740	3.935	3.524	4.713	6.792	3.562	3.368	0.690	0.786	0.622	0.546	0.626	0.558	2.450
13183	chr7	52763804	52766410	+	0	NA	Intergenic	Intergenic	-749391	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	5.679	6.780	2.299	5.706	3.068	1.166	7.671	9.885	4.085	5.285	4.827	2.862	5.637	8.284	7.696	7.607	6.261	6.940	4.086	2.277	1.602	3.948	2.609	2.488	9.025
3285	chr12	36214185	36220345	+	0	NA	intron (NM_001177877, intron 5 of 7)	intron (NM_001177877, intron 5 of 7)	937	NM_027699	71156	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	9.059	2.856	1.040	4.377	2.741	1.536	4.301	4.549	nan	5.832	6.184	5.525	5.261	5.008	5.110	5.131	4.817	7.764	nan	1.615	1.027	1.775	1.408	1.055	5.858
11904	chr5	141286473	141289594	+	0	NA	intron (NM_177879, intron 1 of 44)	Lx5|LINE|L1	46499	NM_177879	330222	Mm.151931	NM_177879	ENSMUSG00000039683	Sdk1	5330440E10|6720466O15Rik	sidekick cell adhesion molecule 1	protein-coding	3.283	3.200	1.214	2.312	1.314	0.649	1.316	1.019	1.893	1.743	1.037	1.250	0.941	1.517	1.301	1.492	1.206	2.062	3.267	3.193	1.687	2.987	5.981	3.715	1.497
1657	chr10	95647968	95652257	+	0	NA	Intergenic	Intergenic	-85945	NM_027722	71207	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	7.042	1.034	0.741	3.126	2.925	1.339	1.704	4.302	3.121	3.358	3.810	1.842	2.345	4.283	2.867	2.707	2.279	3.509	nan	1.934	0.845	nan	1.574	0.645	2.750
3009	chr11	116574282	116576124	+	0	NA	intron (NM_173755, intron 1 of 17)	intron (NM_173755, intron 1 of 17)	6244	NM_173755	217342	Mm.243950	NM_173755	ENSMUSG00000020802	Ube2o	9630022H21|B230113M03Rik|E2-230K|mKIAA1734	ubiquitin-conjugating enzyme E2O	protein-coding	1.857	nan	0.339	1.346	0.906	0.442	2.972	2.870	2.293	nan	6.936	2.111	3.022	2.297	3.277	2.373	1.798	3.205	0.445	nan	0.133	0.648	0.256	0.087	1.930
10692	chr4	134801858	134804423	+	0	NA	3' UTR (NM_025382, exon 11 of 11)	3' UTR (NM_025382, exon 11 of 11)	-35136	NM_145554	100017	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	2.851	1.689	0.703	3.813	1.515	0.865	1.145	1.569	3.744	2.645	1.300	1.418	2.190	3.783	3.019	2.382	1.855	4.486	2.095	1.067	1.123	3.099	nan	0.375	2.448
8484	chr2	102644138	102645966	+	0	NA	Intergenic	Intergenic	-13631	NM_001077514	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	4.286	2.022	0.694	3.467	1.457	0.732	3.459	5.046	3.571	3.261	1.845	1.344	4.490	3.725	4.942	3.933	3.560	2.931	1.011	0.636	0.549	0.854	0.810	0.612	2.760
2717	chr11	97139728	97142676	+	0	NA	intron (NM_198100, intron 6 of 8)	MIRc|SINE|MIR	5217	NR_106094	102466822		NR_106094	ENSMUSG00000099286	Mir7235	Gm27986|mmu-mir-7235	microRNA 7235	ncRNA	9.087	7.037	2.803	9.794	9.920	8.186	7.820	8.724	6.226	13.022	7.482	4.278	7.276	9.874	8.217	9.979	5.896	7.945	5.783	4.528	6.460	7.545	4.675	nan	11.242
6825	chr17	71435361	71449345	+	0	NA	intron (NM_028887, intron 8 of 47)	intron (NM_028887, intron 8 of 47)	32990	NM_028887	74355	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	6.164	3.737	2.453	7.041	7.998	4.634	6.359	7.017	nan	8.992	2.732	2.339	8.190	nan	7.925	10.126	6.923	8.705	1.971	1.390	1.078	2.763	1.897	1.137	6.925
13189	chr7	52887849	52889569	+	0	NA	Intergenic	L1_Mus1|LINE|L1	-872993	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	2.019	1.277	0.419	3.970	2.288	2.358	1.913	3.812	2.544	3.396	0.942	1.346	2.826	5.012	3.192	2.877	3.701	4.799	1.101	1.901	1.436	4.010	1.754	0.960	2.819
13032	chr7	26627492	26631501	+	0	NA	Intergenic	L1_Mur3|LINE|L1	-17418	NM_134231	171265	Mm.377217	NM_134231	ENSMUSG00000091924	Vmn1r185	V1re12	vomeronasal 1 receptor 185	protein-coding	3.115	0.763	0.423	3.113	1.982	1.172	5.280	6.859	2.578	2.780	8.388	4.344	8.106	7.040	4.970	4.342	3.229	3.143	0.612	0.426	0.397	0.323	0.302	0.312	3.230
4659	chr14	51682553	51685767	+	0	NA	Intergenic	Lx2|LINE|L1	32972	NM_001034102	545047	Mm.425915	NM_001034102	ENSMUSG00000068506	Gm5800	EG545047	predicted gene 5800	protein-coding	6.586	9.496	5.017	6.257	4.293	1.673	3.971	5.349	4.554	6.256	4.044	2.952	4.157	5.995	5.648	7.033	4.401	5.788	4.181	2.497	1.716	3.607	2.817	1.554	6.556
771	chr1	157887600	157890113	+	0	NA	Intergenic	Intergenic	362686	NM_001159986	89867	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	7.957	4.306	2.299	4.677	5.231	2.149	5.294	4.138	4.131	3.625	2.608	2.275	5.979	5.483	4.808	7.705	6.256	5.130	nan	1.367	1.107	1.971	nan	0.967	4.739
5697	chr15	101228128	101229942	+	0	NA	exon (NM_019518, exon 4 of 8)	exon (NM_019518, exon 4 of 8)	-3849	NR_045328	380977	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	2.541	0.397	0.575	1.812	2.642	0.743	2.365	3.225	1.789	2.725	2.480	0.910	3.730	4.858	1.703	2.542	1.821	3.802	2.556	0.790	0.857	2.213	1.179	0.714	1.452
401	chr1	89305666	89306993	+	0	NA	Intergenic	ORR1D1|LTR|ERVL-MaLR	99804	NR_040482	77331	Mm.374962	NR_040482	ENSMUSG00000099938	C030007H22Rik	-	RIKEN cDNA C030007H22 gene	ncRNA	5.241	1.343	1.096	2.049	3.013	1.490	1.845	1.468	3.868	3.776	1.649	1.247	3.108	4.211	2.425	5.862	6.150	3.387	1.984	2.145	0.863	nan	2.498	2.390	2.511
15240	chr9	66998997	67002062	+	0	NA	Intergenic	MT2B|LTR|ERVL	-25045	NM_030717	80907	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	1.897	0.780	0.433	0.884	0.261	0.282	3.326	0.815	1.978	1.485	1.508	0.347	1.920	1.616	4.397	3.524	2.490	1.037	nan	0.546	0.565	0.873	0.841	0.443	8.330
186	chr1	54953057	54955127	+	0	NA	Intergenic	Intergenic	-27705	NM_001081433	329154	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	6.852	3.198	1.390	3.194	3.012	1.156	4.899	1.994	2.931	2.814	1.573	1.673	4.636	4.757	4.758	7.480	4.361	4.763	1.797	1.030	0.902	2.210	1.237	0.648	4.840
10033	chr4	44950539	44959366	+	0	NA	Intergenic	Intergenic	-26442	NM_080289	76238	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding	0.320	11.580	5.820	0.318	0.151	0.098	0.212	0.184	0.337	0.326	0.307	0.188	0.123	0.157	0.313	0.529	0.274	nan	0.708	0.454	0.471	nan	0.283	0.303	0.561
1914	chr11	4386894	4388594	+	0	NA	intron (NM_029458, intron 10 of 10)	intron (NM_029458, intron 10 of 10)	53338	NM_029458	75828	Mm.159592	NM_029458	ENSMUSG00000020419	Hormad2	4930529M09Rik	HORMA domain containing 2	protein-coding	2.287	1.073	0.355	1.896	0.361	0.033	1.133	1.679	1.208	2.030	2.332	0.746	1.893	2.254	3.087	3.375	1.733	3.374	1.338	nan	0.269	1.452	0.411	0.600	4.032
8706	chr2	136537470	136539858	+	0	NA	intron (NM_175667, intron 3 of 10)	ID_B1|SINE|B4	6343	NM_175667	319196	Mm.477841	NM_175667	ENSMUSG00000074771	Ankef1	AV276460|Ankrd5	ankyrin repeat and EF-hand domain containing 1	protein-coding	0.738	0.632	0.294	0.126	0.279	0.278	0.471	2.228	0.356	0.305	2.062	1.832	0.387	0.530	0.326	0.349	0.607	0.317	7.051	4.245	2.110	5.590	9.110	5.390	0.392
6696	chr17	47620717	47623182	+	0	NA	intron (NM_020048, intron 3 of 3)	intron (NM_020048, intron 3 of 3)	-8741	NM_198421	224836	Mm.59393	NM_198421	ENSMUSG00000090115	Usp49	C330046L10Rik|Gm545	ubiquitin specific peptidase 49	protein-coding	3.670	4.986	2.818	2.373	2.445	0.813	6.400	4.388	1.097	1.801	2.262	1.724	2.325	2.915	4.222	4.659	4.250	3.242	4.347	2.667	1.632	3.013	4.599	3.185	6.131
6495	chr17	29227286	29234700	+	0	NA	intron (NM_153166, intron 1 of 20)	intron (NM_153166, intron 1 of 20)	6797	NM_153166	240058	Mm.39905	NM_153166	ENSMUSG00000024008	Cpne5	A830083G22Rik	copine V	protein-coding	8.585	5.095	2.049	4.979	3.875	2.017	4.526	7.000	4.267	7.620	4.610	2.684	3.789	4.927	4.246	8.241	4.090	6.949	3.134	1.292	1.294	3.937	2.151	1.827	12.051
6940	chr17	87130705	87132846	+	0	NA	intron (NM_019654, intron 2 of 2)	intron (NM_019654, intron 2 of 2)	24096	NM_019654	56468	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	6.362	4.605	1.853	7.457	3.535	2.337	4.337	4.595	nan	6.860	3.317	4.396	3.960	5.108	5.343	5.504	4.541	6.602	3.163	2.496	2.397	2.609	1.913	2.531	5.816
1705	chr10	107840284	107849853	+	0	NA	intron (NM_001177567, intron 25 of 57)	intron (NM_001177567, intron 25 of 57)	67066	NM_001177567	628870	Mm.336090	NM_001177567	ENSMUSG00000091455	Otogl	EG628870|Gm6924	otogelin-like	protein-coding	6.882	0.717	0.597	3.757	4.083	2.779	7.090	6.263	nan	6.632	2.154	1.917	7.626	7.472	6.613	7.481	7.605	6.596	1.070	0.814	0.780	0.966	1.375	1.248	6.556
3000	chr11	116113712	116119023	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-6132	NM_172570	217333	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	2.475	2.517	1.055	1.938	1.723	1.310	nan	5.239	2.874	nan	4.949	3.483	4.224	5.547	3.862	3.969	4.231	nan	2.138	nan	2.006	3.656	1.834	1.565	2.992
6729	chr17	50592808	50599467	+	0	NA	intron (NM_013880, intron 1 of 5)	intron (NM_013880, intron 1 of 5)	86590	NM_013880	224860	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0.329	0.770	0.516	0.390	0.156	0.074	0.279	0.429	0.320	0.242	0.326	0.152	0.091	nan	0.292	0.730	nan	0.459	5.967	2.988	1.891	3.929	5.012	3.701	0.458
7512	chr19	7012227	7017758	+	0	NA	intron (NM_153795, intron 2 of 14)	intron (NM_153795, intron 2 of 14)	4477	NM_153795	108101	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	5.640	6.113	2.021	6.851	1.965	1.068	8.040	8.986	nan	5.867	4.505	4.148	5.173	7.281	7.091	7.126	4.316	6.915	1.811	1.233	1.220	3.533	1.453	1.234	15.160
6558	chr17	34275204	34277449	+	0	NA	Intergenic	RLTR11A2|LTR|ERVK	11445	NM_010378	14960	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	2.961	5.007	1.540	3.584	1.756	0.623	4.466	3.636	2.324	2.160	0.748	0.478	3.407	5.250	5.521	7.064	4.022	4.110	0.719	0.268	0.055	0.340	0.117	0.126	6.790
5390	chr15	77758589	77761171	+	0	NA	TTS (NM_022410)	TTS (NM_022410)	-4651	NM_001081970	239552	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	nan	5.513	2.264	nan	4.399	2.621	8.291	10.051	3.189	4.425	nan	2.021	5.660	8.353	6.041	6.158	6.711	4.611	3.551	4.560	3.065	5.950	3.260	2.657	6.179
5260	chr15	63906570	63908332	+	0	NA	intron (NM_028992, intron 1 of 11)	MTEa|LTR|ERVL-MaLR	4846	NM_028992	74548	Mm.273185	NM_028992	ENSMUSG00000055748	Gsdmc4	9030605I04Rik	gasdermin C4	protein-coding	3.514	18.056	6.056	3.112	1.399	0.537	1.097	1.971	2.050	2.091	1.705	1.029	1.105	2.139	2.602	2.010	2.368	2.389	1.407	0.964	0.418	1.327	0.670	0.321	3.206
1586	chr10	90631066	90636532	+	0	NA	intron (NM_001177396, intron 1 of 11)	RMER19A|LTR|ERVK	57108	NM_181398	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	5.441	13.682	6.448	6.922	3.805	3.000	3.581	4.855	4.195	8.215	5.889	3.195	4.526	4.597	5.768	6.080	4.313	6.396	5.886	4.118	5.071	5.857	nan	7.244	8.458
14365	chr8	81031758	81033833	+	0	NA	Intergenic	MERV1_I-int|LTR|ERV1	-17889	NM_027554	74841	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	10.212	18.419	4.450	14.343	3.800	2.521	8.009	11.206	5.935	14.308	7.862	4.499	9.609	10.597	12.582	15.612	6.910	11.687	6.086	3.639	3.326	12.954	2.892	3.726	20.572
7918	chr19	61124826	61128618	+	0	NA	3' UTR (NM_001001737, exon 3 of 3)	3' UTR (NM_001001737, exon 3 of 3)	14118	NR_131956	414758	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	3.345	nan	0.689	3.522	2.104	1.134	0.978	2.689	2.531	2.936	1.148	0.782	1.214	3.663	nan	2.817	2.852	3.895	0.962	0.794	0.614	1.671	0.503	0.454	3.861
1986	chr11	12363889	12365244	+	0	NA	intron (NM_001282993, intron 5 of 13)	B4A|SINE|B4	47574	NM_001282994	12808	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	4.195	2.530	0.683	5.776	3.394	1.806	5.505	5.828	4.124	10.443	1.567	2.358	5.381	6.559	7.200	8.865	5.131	6.834	3.308	nan	2.187	5.335	3.959	4.085	9.775
1456	chr10	76673347	76686041	+	0	NA	Intergenic	Lx3_Mus|LINE|L1	46350	NM_009933	12833	Mm.2509	NM_009933	ENSMUSG00000001119	Col6a1	AI747156|Col6a-1	collagen, type VI, alpha 1	protein-coding	3.779	1.054	0.335	nan	1.800	0.996	5.195	3.029	2.870	2.383	1.459	1.218	3.192	4.713	6.599	6.012	5.153	4.102	nan	0.553	0.561	0.908	0.411	0.328	7.222
14240	chr8	60078392	60082009	+	0	NA	Intergenic	Intergenic	254551	NR_126087	75017	Mm.60775	NR_126087	ENSMUSG00000110406	4930470O06Rik	-	RIKEN cDNA 4930470O06 gene	ncRNA	6.973	0.872	1.076	1.683	3.797	2.558	4.006	11.310	3.129	3.009	0.528	0.904	5.197	4.142	3.486	4.874	7.735	4.088	1.809	1.839	1.369	1.278	3.418	3.105	2.371
7471	chr19	4053896	4059546	+	0	NA	TTS (NM_144869)	TTS (NM_144869)	2573	NM_144869	225884	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	4.738	2.678	1.183	4.383	4.646	3.318	7.880	10.479	2.969	3.930	1.917	0.887	5.213	7.750	6.472	7.660	6.197	5.886	0.660	0.898	1.016	0.988	1.239	0.789	8.245
14902	chr9	21418432	21424255	+	0	NA	Intergenic	Intergenic	-3565	NM_007871	13430	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	4.633	8.666	6.449	5.001	3.049	2.878	3.785	3.894	3.856	5.202	4.174	2.929	3.609	5.089	4.274	4.424	3.811	4.362	4.622	3.789	5.010	4.348	4.052	4.539	6.559
2060	chr11	31629797	31632659	+	0	NA	Intergenic	Intergenic	40634	NM_001024919	69556	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	2.146	3.728	0.891	3.654	1.258	0.645	2.112	1.838	2.055	2.903	0.928	0.869	2.316	3.439	2.065	3.802	nan	3.407	1.771	0.861	0.782	2.639	1.012	0.835	3.178
3561	chr12	86100264	86118597	+	0	NA	intron (NM_001199843, intron 2 of 8)	intron (NM_001199843, intron 2 of 8)	26869	NM_001199843	76411	Mm.292345	NM_029601	ENSMUSG00000007867	Ift43	1700019E19Rik|R75064	intraflagellar transport 43	protein-coding	13.030	3.212	1.817	6.240	7.809	5.623	9.148	6.605	8.509	10.342	3.919	1.913	10.562	12.369	8.404	nan	9.974	9.006	1.078	1.235	1.331	1.003	1.216	0.980	12.696
14470	chr8	94430149	94433868	+	0	NA	Intergenic	Intergenic	3095	NR_015514	320377	Mm.486022	NR_015514		9330175E14Rik	A630085K21	RIKEN cDNA 9330175E14 gene	ncRNA	2.234	0.448	0.245	2.535	1.006	0.397	2.750	0.715	3.163	2.990	0.605	0.457	5.087	2.292	3.461	5.923	2.851	4.463	0.878	0.852	0.349	1.572	1.675	1.115	6.310
10699	chr4	134907079	134914787	+	0	NA	intron (NM_027935, intron 2 of 6)	intron (NM_027935, intron 2 of 6)	3983	NM_027935	71817	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	nan	5.426	2.708	5.556	5.702	4.853	8.142	8.362	4.289	6.730	6.446	3.542	6.528	9.494	6.706	6.745	6.073	5.924	3.598	3.189	3.080	4.787	nan	3.475	7.974
8195	chr2	35584295	35585982	+	0	NA	intron (NM_001290637, intron 1 of 16)	intron (NM_001290637, intron 1 of 16)	2298	NM_001290637	69601	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	4.017	2.521	0.596	6.105	1.193	0.608	3.931	4.880	3.235	3.855	1.057	1.166	5.901	4.305	5.788	7.254	4.405	6.327	0.847	0.368	0.291	1.113	0.253	0.111	11.130
15432	chr9	101374202	101375574	+	0	NA	Intergenic	Lx8|LINE|L1	32694	NR_110509	102633035	Mm.411422	NR_110509	ENSMUSG00000101941	Gm28979	-	predicted gene 28979	ncRNA	0.976	0.597	0.394	1.286	0.174	0.082	0.605	0.278	1.512	1.845	0.410	0.168	0.374	2.396	1.618	0.686	0.510	1.138	0.594	0.321	0.250	0.724	0.152	0.307	1.087
14539	chr8	108159798	108162654	+	0	NA	Intergenic	HAL1|LINE|L1	423451	NR_077224	109215	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	10.414	21.484	6.852	12.764	7.483	7.095	6.616	10.057	6.223	15.212	8.562	4.485	8.531	9.248	9.718	11.855	7.274	10.518	6.264	4.817	7.866	10.516	5.651	8.537	17.596
11888	chr5	140590391	140592771	+	0	NA	Intergenic	Intergenic	-15760	NM_008494	16848	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	7.228	2.518	0.607	6.650	2.510	1.240	8.022	5.729	5.865	7.102	8.406	2.501	6.135	9.930	9.156	8.512	5.360	7.327	1.702	0.950	0.591	1.209	nan	0.886	10.391
7001	chr18	5816760	5820968	+	0	NA	Intergenic	Intergenic	-226427	NR_033552	791318	Mm.84339	NR_033552	ENSMUSG00000063087	Gm10125	ENSMUSG00000063087|Zeb1os	predicted gene 10125	ncRNA	6.625	2.385	0.872	4.473	2.416	1.624	4.845	7.821	2.690	4.565	3.938	1.304	5.412	8.320	4.909	5.457	4.456	4.955	2.719	2.066	1.396	2.718	4.222	3.164	8.040
12780	chr6	134710312	134716198	+	0	NA	Intergenic	ORR1G|LTR|ERVL-MaLR	72315	NM_026371	67774	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	1.494	0.905	0.466	1.691	1.717	0.563	1.104	1.690	1.759	1.463	0.598	0.679	1.304	2.302	nan	1.968	1.532	1.947	6.234	3.366	2.070	7.267	4.015	2.422	nan
11940	chr5	145665182	145666454	+	0	NA	Intergenic	L1_Mus1|LINE|L1	54318	NM_017396	53973	Mm.379071	NM_017396	ENSMUSG00000075551	Cyp3a41a	Cyp3a41	cytochrome P450, family 3, subfamily a, polypeptide 41A	protein-coding	2.184	1.342	0.615	1.911	2.693	2.107	3.028	2.895	3.384	2.154	1.958	1.962	3.281	3.445	4.017	3.723	1.831	3.790	0.585	0.284	0.281	0.798	0.298	0.037	2.869
2904	chr11	106440073	106444527	+	0	NA	intron (NM_023913, intron 2 of 21)	ID_B1|SINE|B4	45496	NM_023913	78943	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	6.074	1.547	0.632	3.346	8.302	5.341	4.235	8.505	5.326	5.559	2.114	2.521	3.983	7.655	4.020	5.861	4.952	4.292	0.980	1.236	1.309	nan	1.037	0.889	4.886
11075	chr5	24330424	24334423	+	0	NA	intron (NM_013569, intron 3 of 14)	intron (NM_013569, intron 3 of 14)	-2832	NM_001294162	16511	Mm.6539	NM_013569	ENSMUSG00000038319	Kcnh2	AI326795|ERG1|LQT|Lqt2|M-erg|Merg1|merg1a|merg1b	potassium voltage-gated channel, subfamily H (eag-related), member 2	protein-coding	5.259	2.121	1.315	nan	4.224	1.981	4.769	6.839	4.161	3.901	7.788	2.918	5.450	7.876	4.572	5.038	3.722	4.864	1.748	1.713	0.911	0.998	1.628	1.016	2.351
10940	chr4	150291352	150293146	+	0	NA	intron (NM_001085492, intron 1 of 22)	B1_Mus1|SINE|Alu	10333	NM_001085492	68703	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	3.748	2.147	0.931	1.013	3.209	2.201	2.348	1.563	2.338	4.928	5.709	2.479	0.277	3.947	1.988	1.795	1.487	1.542	0.379	0.431	0.068	0.795	0.612	0.316	1.138
7788	chr19	42900970	42905634	+	0	NA	intron (NM_001081257, intron 9 of 11)	intron (NM_001081257, intron 9 of 11)	-123326	NM_019424	192236	Mm.218381	NM_019424	ENSMUSG00000025188	Hps1	6030422N11Rik|BB405864|Gm21361|Hps|ep	Hermansky-Pudlak syndrome 1	protein-coding	nan	0.720	0.420	1.257	2.488	1.375	2.564	3.467	4.307	5.287	1.078	1.141	2.350	4.417	4.730	4.398	3.732	3.403	0.424	0.315	0.184	0.272	0.837	0.354	2.701
3643	chr12	102227102	102228509	+	0	NA	intron (NM_172152, intron 8 of 16)	RLTR17B_Mm|LTR|ERVK	-55269	NM_177620	217835	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	2.680	2.971	1.149	2.049	0.984	0.378	0.969	2.944	1.472	2.061	1.026	0.353	2.275	3.579	2.564	3.738	3.749	2.542	0.552	0.651	0.071	0.798	0.390	0.202	5.843
5325	chr15	74579374	74583829	+	0	NA	intron (NM_174991, intron 25 of 30)	intron (NM_174991, intron 25 of 30)	54717	NM_001177437	69439	Mm.263708	NM_001177437	ENSMUSG00000022603	Mroh4	1700016M24Rik	maestro heat-like repeat family member 4	protein-coding	nan	2.136	0.724	nan	0.883	0.422	nan	4.212	1.431	nan	nan	1.287	2.043	nan	2.612	2.448	nan	2.223	2.285	1.156	1.156	5.446	0.860	0.563	3.223
2346	chr11	68006620	68015503	+	0	NA	intron (NM_018768, intron 4 of 7)	intron (NM_018768, intron 4 of 7)	44578	NM_018768	55943	Mm.3973	NM_018768	ENSMUSG00000020903	Stx8	0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB	syntaxin 8	protein-coding	1.458	3.327	1.542	2.113	1.540	0.840	1.280	0.624	1.198	1.601	0.603	0.542	1.405	nan	2.027	1.843	1.499	1.923	6.084	4.295	3.104	9.372	nan	2.190	3.479
2195	chr11	53574538	53578719	+	0	NA	intron (NM_001290805, intron 2 of 16)	MT2C_Mm|LTR|ERVL	9259	NM_001290806	16568	Mm.88694	NM_008443	ENSMUSG00000018395	Kif3a	Kif3|Kifl|Kns3	kinesin family member 3A	protein-coding	11.450	11.581	3.473	14.776	5.989	2.776	8.233	7.359	7.719	10.163	7.270	3.950	8.821	11.952	9.720	12.191	7.332	11.382	3.760	2.517	2.128	5.756	2.370	1.799	14.332
5546	chr15	86001846	86009485	+	0	NA	intron (NM_009886, intron 1 of 34)	intron (NM_009886, intron 1 of 34)	28112	NM_009886	12614	Mm.22680	NM_009886	ENSMUSG00000016028	Celsr1	Adgrc1|Crsh|Scy|crash	cadherin, EGF LAG seven-pass G-type receptor 1	protein-coding	nan	11.145	4.664	2.726	2.063	1.424	nan	nan	nan	2.137	2.350	2.080	3.028	2.749	nan	nan	nan	nan	nan	1.477	1.106	nan	0.824	0.842	2.557
10591	chr4	130592799	130597791	+	0	NA	Intergenic	Intergenic	-21259	NM_025998	67149	Mm.423029	NM_025998	ENSMUSG00000078532	Nkain1	2610200G18Rik|2810426C15Rik	Na+/K+ transporting ATPase interacting 1	protein-coding	0.131	0.624	0.466	0.259	0.206	0.168	0.145	0.207	0.197	0.172	0.169	0.140	0.045	0.075	nan	0.423	0.192	0.355	3.987	5.268	4.568	4.412	4.233	3.041	0.297
13045	chr7	28233068	28234898	+	0	NA	Intergenic	MMERVK10C-int|LTR|ERVK	-33898	NM_198425	386655	Mm.258201	NM_198425	ENSMUSG00000046058	Eid2	Cri2|EID-2	EP300 interacting inhibitor of differentiation 2	protein-coding	3.879	3.875	1.265	3.566	1.943	1.067	1.698	8.887	2.772	3.823	3.721	2.278	2.950	5.442	3.988	3.609	2.275	3.327	1.347	1.247	0.925	1.449	0.681	1.291	4.909
6329	chr17	10655725	10660016	+	0	NA	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	182321	NM_027032	69310	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	7.301	0.526	0.350	3.836	4.347	1.949	7.784	2.426	4.624	5.443	1.019	1.412	5.785	7.840	6.497	nan	5.795	7.192	nan	0.812	0.385	0.729	0.995	0.268	9.199
5202	chr15	58249431	58251351	+	0	NA	Intergenic	Intergenic	-35499	NM_026346	67731	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	1.918	5.699	3.894	nan	0.884	0.241	nan	1.825	nan	nan	1.382	1.504	1.697	1.620	1.511	1.271	1.761	2.044	1.076	0.812	0.442	0.770	0.392	0.485	1.346
2555	chr11	84374855	84382414	+	0	NA	intron (NM_133360, intron 48 of 53)	intron (NM_133360, intron 48 of 53)	134867	NM_019816	56321	Mm.257482	NM_019816	ENSMUSG00000018697	Aatf	4933415H02Rik|5830465M17Rik|Che-1|Trb	apoptosis antagonizing transcription factor	protein-coding	nan	0.521	0.228	nan	0.227	0.098	0.274	0.212	0.296	0.242	0.256	0.118	0.136	0.153	0.168	0.484	0.250	0.314	1.305	2.471	1.318	nan	1.244	1.007	nan
3718	chr12	110116921	110133148	+	0	NA	Intergenic	B4|SINE|B4	33039	NR_045466	67280	Mm.390495	NR_045466		3110009F21Rik	-	RIKEN cDNA 3110009F21 gene	ncRNA	8.397	1.351	0.590	nan	2.223	1.159	8.797	4.612	nan	nan	0.923	1.717	6.619	7.428	6.553	7.147	7.177	7.384	2.607	2.391	1.392	4.718	4.046	2.760	8.484
14914	chr9	22021820	22023280	+	0	NA	intron (NM_010487, intron 6 of 6)	Tigger7|DNA|TcMar-Tigger	19562	NM_008925	19089	Mm.214593	NM_008925	ENSMUSG00000003402	Prkcsh	80K-H|PKCSH	protein kinase C substrate 80K-H	protein-coding	2.354	0.433	0.475	3.445	2.094	0.984	1.668	1.742	2.153	2.779	2.204	2.507	2.384	3.954	2.303	3.818	1.753	3.548	0.463	0.978	0.556	0.501	0.738	0.235	4.732
2475	chr11	75735624	75742036	+	0	NA	intron (NM_009536, intron 1 of 5)	B1_Mm|SINE|Alu	5943	NM_009536	22627	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	4.758	1.318	0.715	3.258	1.733	0.896	nan	4.576	1.879	2.443	2.132	0.652	4.497	4.622	nan	6.514	4.727	nan	8.295	6.819	5.480	7.509	8.364	6.862	6.172
3834	chr13	9020308	9024396	+	0	NA	Intergenic	Intergenic	-26340	NM_027000	69237	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	3.639	0.813	0.952	1.715	1.836	1.200	3.613	4.983	3.636	2.889	1.753	1.994	4.738	3.848	3.701	3.006	2.393	3.529	0.721	0.410	0.614	0.549	0.839	0.700	2.212
13484	chr7	106613240	106618882	+	0	NA	intron (NM_001277179, intron 1 of 2)	intron (NM_001277179, intron 1 of 2)	28584	NM_001277179	434223	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	2.041	2.392	0.828	2.083	1.180	0.480	1.016	1.904	1.464	3.725	1.977	1.449	1.123	nan	2.053	1.797	1.143	nan	nan	2.624	1.378	5.560	2.114	1.525	2.906
11680	chr5	122996709	123001695	+	0	NA	TTS (NR_045820)	TTS (NR_045820)	9848	NR_045820	109202	Mm.30769	NM_175405	ENSMUSG00000056735	A930024E05Rik	-	RIKEN cDNA A930024E05 gene	ncRNA	5.158	1.540	0.888	4.994	2.722	1.191	4.063	4.997	5.245	4.495	4.223	4.116	5.205	5.824	5.333	5.205	4.118	4.981	nan	nan	0.765	2.062	nan	0.843	3.623
9737	chr3	120993014	120995589	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-107569	NR_130170	320739	Mm.388474	NR_130170		6530403H02Rik	-	RIKEN cDNA 6530403H02 gene	ncRNA	8.391	6.841	2.504	8.245	3.113	1.373	8.485	8.223	6.110	nan	5.983	2.975	9.808	8.753	9.206	9.476	7.489	8.210	3.299	2.106	0.637	4.253	nan	1.220	9.300
15618	chr9	122015937	122020479	+	0	NA	Intergenic	Intergenic	-22182	NM_153540	215494	Mm.402151	NM_153540	ENSMUSG00000066235	Pomgnt2	Ago61|C85492|Gtdc2	protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2	protein-coding	4.300	1.333	0.554	4.750	2.550	1.008	1.538	1.799	2.508	3.083	3.593	1.354	1.553	2.795	2.490	2.919	1.938	3.942	1.500	1.839	1.398	4.713	nan	0.934	3.490
4084	chr13	47073660	47087159	+	0	NA	intron (NM_172262, intron 19 of 20)	intron (NM_172262, intron 19 of 20)	25812	NM_025900	110052	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	nan	2.722	2.208	3.394	3.648	2.348	3.444	3.487	3.440	3.512	0.938	1.262	2.700	5.275	4.726	6.073	3.074	nan	0.710	nan	0.545	0.565	0.620	0.545	nan
5491	chr15	82728422	82730883	+	0	NA	Intergenic	L1Md_T|LINE|L1	34470	NM_023623	71754	Mm.443024	NM_023623	ENSMUSG00000068083	Cyp2d40	1300013D18Rik|CYPIID3|P450-DB3	cytochrome P450, family 2, subfamily d, polypeptide 40	protein-coding	7.435	10.990	3.256	7.274	3.951	2.665	7.942	9.001	3.395	10.487	nan	3.529	8.109	6.965	7.990	8.590	5.517	6.997	2.680	1.427	3.672	nan	2.280	3.975	12.230
297	chr1	74069943	74084563	+	0	NA	intron (NM_027884, intron 2 of 34)	intron (NM_027884, intron 2 of 34)	47194	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	8.920	2.258	0.724	10.816	7.318	3.847	5.068	5.352	5.918	9.507	2.140	1.476	6.861	10.582	6.377	12.917	5.708	9.753	nan	nan	1.255	2.083	nan	0.898	12.646
963	chr1	183161523	183165102	+	0	NA	intron (NM_001278219, intron 2 of 8)	intron (NM_001278219, intron 2 of 8)	-15755	NM_001278220	68897	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched RND transporter family member 1	protein-coding	5.296	4.994	2.146	4.279	2.326	1.496	1.514	3.343	3.700	3.427	3.493	2.238	3.590	3.967	3.241	3.893	1.657	4.642	1.506	1.362	0.848	2.460	0.965	0.667	4.159
8582	chr2	119801514	119808645	+	0	NA	intron (NM_001290800, intron 6 of 19)	intron (NM_001290800, intron 6 of 19)	5565	NM_019392	22174	Mm.2901	NM_019392	ENSMUSG00000027298	Tyro3	AI323366|Brt|Dtk|Etk-2|Rse|Sky|TK19-2|Tif|etk2/tyro3|tk19-1	TYRO3 protein tyrosine kinase 3	protein-coding	3.314	0.938	0.505	3.864	2.673	1.628	1.673	4.192	3.734	3.939	0.550	0.777	3.934	4.774	3.511	6.131	5.273	3.615	1.102	0.968	0.897	1.112	1.014	0.912	4.383
14354	chr8	77625165	77633201	+	0	NA	TTS (NR_045467)	TTS (NR_045467)	5011	NR_045467	67357	Mm.71129	NR_045467	ENSMUSG00000086781	1700092C02Rik	-	RIKEN cDNA 1700092C02 gene	ncRNA	4.370	nan	1.075	2.720	3.382	2.722	nan	4.410	nan	3.587	1.423	1.006	7.174	7.055	6.114	7.362	7.843	3.681	1.956	1.877	1.580	nan	1.316	1.349	nan
10199	chr4	80562646	80569320	+	0	NA	Intergenic	MERVL-int|LTR|ERVL	-268230	NM_031202	22178	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	5.018	0.757	0.617	3.681	3.821	2.027	3.775	4.091	3.925	3.567	2.846	2.137	5.176	5.211	4.431	5.837	3.391	5.512	nan	0.948	0.588	1.152	1.052	1.014	3.592
9291	chr3	51842701	51845837	+	0	NA	intron (NM_001004176, intron 2 of 4)	PB1D10|SINE|Alu	183090	NM_001310482	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	4.645	0.840	0.711	3.481	7.206	7.344	5.931	6.091	5.562	4.119	3.111	1.756	6.825	7.226	4.499	5.853	6.121	5.247	4.422	3.077	3.767	3.032	5.761	5.963	5.024
4959	chr14	119405165	119407680	+	0	NA	intron (NM_015820, intron 1 of 1)	Lx9|LINE|L1	268157	NM_015820	50787	Mm.445777	NM_015820	ENSMUSG00000053465	Hs6st3	6OST3|HS6ST-3	heparan sulfate 6-O-sulfotransferase 3	protein-coding	5.677	3.581	1.677	5.320	1.797	0.632	4.631	7.083	4.787	4.431	3.010	3.002	4.893	7.391	7.206	7.307	4.679	6.658	5.930	2.089	0.984	5.842	3.894	2.802	4.758
4931	chr14	102279247	102280407	+	0	NA	Intergenic	Intergenic	439204	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	2.616	nan	1.752	0.991	1.862	1.330	1.899	3.948	2.143	2.401	1.379	3.192	2.022	3.165	2.005	1.519	2.599	1.680	0.636	1.167	0.779	0.366	0.703	0.135	nan
14588	chr8	110027048	110028135	+	0	NA	Intergenic	Intergenic	11743	NM_011998	26887	Mm.89207	NM_011998	ENSMUSG00000035930	Chst4	GST-3|Gn6st-2|HEC-GlcNAc6ST	carbohydrate (chondroitin 6/keratan) sulfotransferase 4	protein-coding	4.518	9.140	4.587	2.104	3.194	1.323	1.179	2.248	2.634	4.453	4.923	1.984	2.161	3.563	1.236	1.928	2.004	2.660	0.755	1.994	2.439	nan	1.240	0.617	1.342
6340	chr17	13095656	13097160	+	0	NA	TTS (NR_024558)	TTS (NR_024558)	2064	NR_024558	625850	Mm.422879	NR_024558		Gm11166	ENSMUSG00000079713	predicted gene 11166	ncRNA	2.992	0.786	0.865	2.578	2.178	1.364	2.436	nan	2.063	2.701	0.550	0.392	3.754	4.619	2.785	5.331	2.737	3.563	1.859	1.546	1.181	1.096	0.660	1.505	4.298
13141	chr7	38891302	38893003	+	0	NA	Intergenic	L1_Mur2|LINE|L1	-121848	NR_073038	100861861	Mm.60620	NR_073038		Gm21276	-	predicted gene, 21276	pseudo	1.974	9.325	2.848	2.099	0.804	0.739	2.284	2.107	1.251	2.265	1.175	0.880	1.412	1.468	2.821	3.273	1.211	2.084	4.399	1.355	3.447	4.532	2.649	3.325	5.312
2031	chr11	22568879	22570278	+	0	NA	Intergenic	MTA_Mm-int|LTR|ERVL-MaLR	57295	NM_153596	103765	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	3.076	nan	0.246	2.319	4.881	3.309	1.943	4.708	3.523	3.804	1.333	1.914	3.347	4.769	4.877	5.496	2.765	4.825	3.789	1.960	1.998	3.252	3.163	2.107	1.665
5627	chr15	98814435	98817195	+	0	NA	intron (NM_016781, intron 3 of 11)	intron (NM_016781, intron 3 of 11)	-7890	NM_001013741	13199	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	11.888	11.044	6.003	9.120	7.058	4.478	8.971	10.180	6.447	7.789	7.590	4.917	9.715	8.893	8.371	8.113	10.237	9.160	12.400	8.280	6.242	10.385	13.170	10.566	7.757
8798	chr2	151337501	151340087	+	0	NA	Intergenic	IAPEz-int|LTR|ERVK	36755	NR_040747	74660	Mm.170672	NR_040747	ENSMUSG00000087609	4930442J19Rik	1700029E19Rik|Gm14152|OTTMUSG00000015807	RIKEN cDNA 4930442J19 gene	ncRNA	1.463	0.547	0.100	0.687	0.317	0.142	0.978	1.420	1.022	0.790	0.616	0.357	0.926	0.731	1.027	1.886	0.883	1.586	3.574	1.279	0.559	3.324	1.643	0.471	1.634
980	chr1	184408531	184412641	+	0	NA	Intergenic	Intergenic	147105	NR_040472	73590	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	4.641	0.703	0.286	2.285	1.399	0.656	1.401	4.112	3.291	3.125	0.374	0.384	3.915	4.202	3.904	11.364	6.590	6.174	0.465	0.251	0.277	0.727	0.254	0.224	5.007
1596	chr10	92583915	92584943	+	0	NA	Intergenic	RMER13A1|LTR|ERVK	137989	NM_008682	17997	Mm.2998	NM_008682	ENSMUSG00000019988	Nedd1	-	neural precursor cell expressed, developmentally down-regulated gene 1	protein-coding	1.608	1.400	0.427	1.378	2.419	0.662	0.451	0.732	0.898	1.270	0.479	0.467	0.375	3.042	1.110	1.176	1.018	nan	0.547	0.803	0.998	nan	nan	0.598	1.708
5957	chr16	25963703	25965215	+	0	NA	intron (NM_173379, intron 14 of 14)	intron (NM_173379, intron 14 of 14)	141325	NM_173379	210530	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	3.327	0.588	0.561	1.120	1.451	0.758	3.762	5.219	2.729	1.645	1.276	0.593	7.125	6.255	3.117	4.387	2.776	3.409	0.468	0.580	0.309	0.773	nan	0.247	2.992
13751	chr7	133850377	133852091	+	0	NA	intron (NM_025850, intron 1 of 10)	L1M5|LINE|L1	-68449	NM_001286031	101437	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	1.270	7.048	4.708	1.454	0.697	0.546	0.910	1.092	nan	0.805	0.597	0.581	0.493	0.843	1.126	1.317	0.912	1.368	4.603	3.324	2.354	3.172	5.601	5.062	1.040
13225	chr7	56548966	56561370	+	0	NA	Intergenic	RLTR51B_Mm|LTR|ERVK?	315397	NM_021879	18431	Mm.137052	NM_021879	ENSMUSG00000030450	Oca2	D7H15S12|D7Icr28RN|D7Nic1|p|p<cas>	oculocutaneous albinism II	protein-coding	nan	2.220	1.087	3.723	2.358	1.262	3.564	3.455	3.012	4.313	0.942	0.857	4.037	4.135	4.180	nan	3.739	4.241	1.259	0.964	0.642	0.915	0.944	0.799	4.955
7941	chr2	5403817	5407149	+	0	NA	intron (NR_030601, intron 1 of 1)	intron (NR_030601, intron 1 of 1)	26093	NR_030601	100124465		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	nan	0.779	0.705	1.005	1.130	0.776	4.235	5.613	1.700	2.844	0.779	0.676	6.669	5.996	2.558	1.738	4.239	2.504	1.142	0.967	0.727	1.206	1.992	1.612	1.913
2697	chr11	96398136	96400829	+	0	NA	Intergenic	Intergenic	33724	NM_008266	15407	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	0.359	nan	0.147	0.418	0.248	0.047	0.243	0.345	0.347	0.475	0.182	0.109	0.248	0.303	0.151	0.498	nan	0.468	2.018	3.321	1.129	6.617	nan	nan	0.379
2097	chr11	44283169	44290822	+	0	NA	Intergenic	MLT2B2|LTR|ERVL	-113068	NM_001303244	16160	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	3.348	10.365	5.120	3.714	1.793	0.760	2.383	nan	2.689	3.863	2.487	1.541	2.871	3.297	3.384	nan	2.397	nan	nan	0.987	0.824	nan	nan	0.937	3.768
6423	chr17	26372071	26372987	+	0	NA	Intergenic	Intergenic	-42436	NM_001081656	240055	Mm.133211	NM_001081656	ENSMUSG00000034413	Neurl1b	C230078M08Rik|EG240055	neuralized E3 ubiquitin protein ligase 1B	protein-coding	4.351	3.848	1.162	3.993	1.236	0.632	3.266	4.485	4.547	5.567	4.750	2.647	3.795	3.364	4.090	6.235	4.042	4.476	3.261	0.460	0.552	2.827	1.821	0.446	5.348
1651	chr10	95235353	95238191	+	0	NA	intron (NM_009950, intron 2 of 2)	intron (NM_009950, intron 2 of 2)	86937	NM_001330138	12905	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	4.243	0.808	0.346	3.836	3.146	2.030	3.140	5.015	4.226	5.986	nan	1.333	4.933	6.064	5.299	5.495	4.942	5.005	nan	1.137	0.506	3.239	0.246	0.172	4.388
13643	chr7	120293370	120297881	+	0	NA	intron (NM_026458, intron 24 of 30)	L1Md_T|LINE|L1	-33059	NM_177213	320631	Mm.78330	NM_177213	ENSMUSG00000054746	Abca15	4930500I12Rik	ATP-binding cassette, sub-family A (ABC1), member 15	protein-coding	5.026	1.117	0.506	2.726	3.728	1.878	4.269	4.452	3.413	4.312	6.300	2.680	5.991	6.024	4.856	3.987	3.692	4.349	1.436	0.730	0.819	1.065	0.995	0.687	4.182
13375	chr7	87530486	87534302	+	0	NA	Intergenic	L1_Mus3|LINE|L1	-38882	NM_001317397	22173	Mm.238127	NM_011661	ENSMUSG00000004651	Tyr	Oca1|albino|c|skc35	tyrosinase	protein-coding	10.324	8.678	4.242	8.483	4.242	3.207	8.898	10.532	5.032	7.990	9.119	4.338	8.280	11.271	8.019	9.204	8.012	8.852	3.411	2.086	2.578	nan	3.819	3.213	14.641
11502	chr5	104153394	104155508	+	0	NA	Intergenic	MTB|LTR|ERVL-MaLR	-16252	NM_010080	666279	Mm.319832	NM_010080	ENSMUSG00000053268	Dspp	Dmp2|Dmp3|Dpp|Dsp	dentin sialophosphoprotein	protein-coding	2.857	4.405	2.467	3.710	2.088	1.249	3.597	1.348	2.832	2.850	1.197	0.929	2.923	3.832	4.750	5.164	2.757	4.967	nan	1.134	0.633	0.825	0.679	0.461	3.403
5451	chr15	80626330	80632063	+	0	NA	intron (NM_010815, intron 1 of 6)	intron (NM_010815, intron 1 of 6)	5713	NM_010815	17444	Mm.12947	NM_010815	ENSMUSG00000042351	Grap2	GRAP-2|GRB2L|GRBLG|GRID|Gads|GrbX|Grf40|GrpL|Mona|P38	GRB2-related adaptor protein 2	protein-coding	6.160	nan	4.071	4.526	2.975	1.277	nan	6.361	3.773	nan	nan	2.799	5.098	4.657	5.099	4.888	nan	4.487	6.649	3.878	2.683	nan	3.673	2.741	3.607
10496	chr4	123289697	123291557	+	0	NA	intron (NM_148917, intron 4 of 13)	intron (NM_148917, intron 4 of 13)	7342	NM_148917	230721	Mm.277091	NM_130881	ENSMUSG00000011257	Pabpc4	-	poly(A) binding protein, cytoplasmic 4	protein-coding	7.345	1.313	0.480	4.704	4.641	2.275	2.633	6.655	3.416	3.328	2.481	2.463	3.223	5.702	nan	3.783	2.893	6.542	1.025	1.527	0.987	0.813	1.092	1.030	4.784
13381	chr7	87797774	87801950	+	0	NA	intron (NM_001143834, intron 3 of 10)	L1_Mus3|LINE|L1	215694	NM_001143834	108071	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	4.637	1.677	1.016	4.924	4.249	2.675	3.193	4.157	3.373	3.623	2.338	1.534	3.358	5.568	4.098	3.942	2.874	4.327	1.049	1.068	1.264	nan	0.567	0.531	3.734
12756	chr6	131337898	131338960	+	0	NA	Intergenic	Lx|LINE|L1	-24602	NM_172891	243659	Mm.20114	NM_172891	ENSMUSG00000032899	Styk1	9130025L13|AI326477|Nok	serine/threonine/tyrosine kinase 1	protein-coding	6.374	10.086	5.166	8.031	3.508	2.632	7.558	9.776	3.612	15.289	6.767	4.316	5.436	6.093	9.295	9.151	6.720	6.944	4.534	3.023	4.953	4.180	4.602	6.890	11.673
12662	chr6	120127693	120130110	+	0	NA	intron (NM_016718, intron 1 of 3)	IAPEz-int|LTR|ERVK	35521	NM_016718	29862	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	2.987	3.489	2.149	2.756	2.345	1.036	1.975	2.469	1.743	2.409	1.625	0.792	1.765	3.722	1.953	3.898	1.670	2.916	1.345	1.251	1.281	1.883	nan	1.225	2.116
9403	chr3	84755657	84762069	+	0	NA	Intergenic	Intergenic	-56714	NM_001177773	50754	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	1.159	0.610	0.645	0.637	0.432	0.154	0.621	1.477	0.796	0.545	0.902	0.545	0.639	0.563	0.529	nan	1.287	0.719	8.068	2.320	1.644	2.599	4.334	3.179	0.603
12350	chr6	83002830	83005576	+	0	NA	intron (NM_033079, intron 5 of 9)	intron (NM_033079, intron 5 of 9)	29268	NM_010070	13448	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	8.889	14.632	4.323	8.791	3.501	2.398	7.902	7.985	4.024	7.912	4.700	3.630	8.270	8.144	9.690	12.104	8.170	8.393	3.908	2.233	2.502	4.285	2.429	3.560	13.541
12063	chr6	15685745	15690592	+	0	NA	Intergenic	L1Md_T|LINE|L1	-32493	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	5.627	nan	1.224	2.964	4.068	1.621	5.491	4.506	nan	4.073	2.205	1.084	6.206	7.767	6.251	9.673	6.444	5.885	0.785	1.046	0.430	0.914	0.816	0.554	3.607
14101	chr8	27099032	27101261	+	0	NA	intron (NM_054044, intron 2 of 18)	B1_Mus1|SINE|Alu	14305	NM_054044	78560	Mm.87046	NM_054044	ENSMUSG00000031486	Adgra2	8430414O08Rik|9530074E10Rik|Gpr124|Tem5|mKIAA1531	adhesion G protein-coupled receptor A2	protein-coding	4.350	nan	0.851	2.327	2.015	1.046	6.303	3.819	1.857	2.124	0.912	0.544	4.510	6.731	7.572	6.419	6.303	4.364	0.497	0.793	0.652	nan	0.202	0.127	6.105
11234	chr5	53415665	53419274	+	0	NA	Intergenic	Intergenic	-138310	NM_001080928	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	2.840	0.492	0.561	1.344	0.834	0.497	3.883	2.442	1.682	1.688	1.109	0.454	2.661	2.264	3.317	3.233	2.139	2.791	1.128	1.420	1.189	3.422	0.880	0.729	5.554
6778	chr17	64324045	64325575	+	0	NA	intron (NM_144859, intron 1 of 8)	Lx8|LINE|L1	7073	NM_144859	224938	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja 2, RING-H2 motif containing	protein-coding	0.442	0.562	0.102	0.401	0.249	0.033	0.405	0.479	nan	0.490	0.544	0.592	0.290	nan	0.332	0.470	1.116	0.750	3.166	1.674	0.778	1.066	6.556	3.762	0.154
2123	chr11	46209579	46212461	+	0	NA	intron (NM_133769, intron 26 of 30)	ID_B1|SINE|B4	-21115	NR_105955	102465598		NR_105955	ENSMUSG00000099230	Mir6989	Gm27885|mmu-mir-6989	microRNA 6989	ncRNA	1.640	8.119	7.666	1.105	0.914	0.469	0.680	nan	0.682	0.639	0.521	0.496	0.439	1.394	0.570	nan	0.569	nan	nan	1.251	0.851	nan	nan	0.566	0.772
8713	chr2	137032307	137035980	+	0	NA	intron (NM_001038641, intron 4 of 7)	L1Md_A|LINE|L1	82377	NM_013822	16449	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	2.502	0.313	0.280	2.563	2.306	1.954	4.321	3.928	2.915	3.079	1.066	0.799	5.627	5.559	5.542	5.247	5.641	4.831	0.930	0.613	0.295	0.508	0.756	0.608	2.744
11949	chr5	147058939	147064739	+	0	NA	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	14733	NM_080795	140887	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	5.498	1.060	0.556	4.763	3.071	1.632	3.959	5.131	5.099	5.487	2.236	1.474	5.515	6.676	6.201	6.616	4.298	5.430	3.686	2.102	2.066	4.015	2.482	1.660	4.811
9991	chr4	40728262	40729464	+	0	NA	intron (NM_008298, intron 5 of 8)	B1_Mur4|SINE|Alu	5933	NM_001164672	15502	Mm.27897	NM_008298	ENSMUSG00000028410	Dnaja1	HSJ-2|Hsj2|Nedd7	DnaJ heat shock protein family (Hsp40) member A1	protein-coding	5.966	6.830	3.336	4.884	2.626	0.979	2.969	3.242	3.622	3.847	9.126	3.541	1.612	3.820	2.801	3.234	2.357	3.767	0.928	1.991	1.596	1.001	0.843	0.424	3.998
9547	chr3	95796303	95801209	+	0	NA	intron (NM_001081293, intron 1 of 10)	B1_Mus2|SINE|Alu	20197	NM_001081293	75137	Mm.196275	NM_028328	ENSMUSG00000028106	Rprd2	2810036A19Rik|4930535B03Rik|6720469I21Rik|AL022841|AL022940|AU021304|BB077382|mKIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding	6.617	18.232	6.557	7.285	3.551	1.942	2.776	2.072	4.386	6.363	nan	1.563	2.515	4.325	3.909	4.624	3.101	5.653	3.504	2.834	2.667	3.582	1.590	2.188	6.637
10071	chr4	48055008	48059590	+	0	NA	TTS (NM_001307989)	TTS (NM_001307989)	6053	NM_001307989	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	4.850	10.029	3.386	7.652	3.648	2.045	2.246	3.752	4.070	8.515	2.594	1.838	3.093	4.679	6.429	7.977	2.954	6.044	4.524	1.594	1.981	4.594	1.761	1.957	9.061
10429	chr4	117930994	117965620	+	0	NA	intron (NM_009176, intron 9 of 11)	intron (NM_009176, intron 9 of 11)	-18544	NM_001284192	11876	Mm.56897	NM_009711	ENSMUSG00000028539	Artn	neublastin	artemin	protein-coding	5.892	1.077	0.434	4.944	4.745	2.545	7.240	6.421	4.406	8.014	5.377	2.692	6.117	10.031	5.958	7.626	4.114	6.217	3.764	1.991	1.750	3.066	3.345	2.486	10.693
5594	chr15	96514057	96515896	+	0	NA	Intergenic	RMER19B|LTR|ERVK	-54133	NM_028148	72193	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	5.308	0.869	1.056	2.141	3.511	1.747	9.076	6.157	2.506	3.625	2.317	1.227	4.829	5.184	3.793	4.824	6.381	1.692	0.922	0.926	0.999	0.860	1.248	0.734	4.591
3701	chr12	106990459	106997780	+	0	NA	Intergenic	Intergenic	-277795	NR_015512	71033	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA	2.117	0.598	0.501	nan	0.447	0.250	1.583	nan	nan	nan	0.388	0.792	1.784	nan	1.006	1.022	1.356	1.331	5.955	4.179	3.034	3.152	9.388	7.685	nan
15630	chr9	122926052	122933188	+	0	NA	exon (NM_009544, exon 4 of 4)	exon (NM_009544, exon 4 of 4)	6542	NM_009544	22646	Mm.290595	NM_009544	ENSMUSG00000057895	Zfp105	AW557864	zinc finger protein 105	protein-coding	5.895	4.465	1.768	4.316	2.071	1.674	3.882	3.908	6.035	8.354	1.837	1.099	6.460	5.886	5.510	7.410	5.356	7.958	2.336	1.475	1.710	2.640	nan	2.046	10.694
2675	chr11	94968399	94971271	+	0	NA	intron (NM_009161, intron 7 of 10)	intron (NM_009161, intron 7 of 10)	2242	NM_018792	54388	Mm.30482	NM_018792	ENSMUSG00000038994	Hils1	H1.9|TISP64	histone H1-like protein in spermatids 1	protein-coding	0.532	nan	0.499	0.677	0.727	0.562	0.898	1.056	0.743	0.665	0.427	0.842	0.578	0.729	0.845	0.999	nan	1.075	1.232	nan	1.501	4.115	nan	nan	0.808
11445	chr5	93252078	93255529	+	0	NA	Intergenic	Intergenic	-13770	NM_007635	12452	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	5.970	0.389	0.532	3.111	6.325	3.650	7.111	5.938	5.032	4.269	4.070	2.263	5.451	7.111	6.638	6.141	5.295	6.101	1.109	1.094	0.920	0.913	1.275	1.116	5.128
8266	chr2	59449704	59451415	+	0	NA	Intergenic	B2_Mm1a|SINE|B2	-34094	NM_029723	76747	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	13.506	6.324	1.760	15.973	5.115	2.742	13.386	14.345	7.953	17.724	8.635	6.489	12.547	13.724	12.422	15.032	11.269	14.162	5.589	3.308	4.455	8.322	4.614	5.556	24.570
15127	chr9	57646684	57648691	+	0	NA	intron (NM_001304761, intron 2 of 14)	MIRb|SINE|MIR	-2034	NM_007783	12988	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	3.765	2.771	1.407	1.839	2.157	1.070	3.877	3.510	2.010	2.583	0.358	0.356	2.280	5.222	3.524	3.560	2.352	4.097	0.758	0.885	0.498	0.458	0.985	0.653	6.987
7308	chr18	62018128	62019319	+	0	NA	Intergenic	Intergenic	65648	NM_172628	225608	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	5.233	nan	0.284	1.831	1.126	0.277	2.018	4.149	2.814	3.422	3.920	1.757	1.824	4.501	2.891	2.456	1.573	3.504	1.949	0.939	0.845	3.772	1.474	0.385	4.106
11747	chr5	128928177	128930618	+	0	NA	intron (NM_001310733, intron 1 of 20)	intron (NM_001310733, intron 1 of 20)	24089	NM_001081388	231760	Mm.233996	NM_001081388	ENSMUSG00000029420	Rimbp2	A930033C01Rik|mKIAA0318	RIMS binding protein 2	protein-coding	0.511	0.150	0.428	0.625	0.148	0.128	0.546	0.437	0.308	nan	0.291	0.123	0.088	0.321	nan	0.546	nan	nan	nan	6.155	3.286	2.485	4.003	3.081	nan
6830	chr17	71555491	71556713	+	0	NA	TTS (NR_015549)	TTS (NR_015549)	4041	NM_029254	70891	Mm.477599	NM_029254	ENSMUSG00000052525	Spdya	4921517J08Rik|4930548B21Rik|GS4|MLZ-465|Spdy1	speedy/RINGO cell cycle regulator family, member A	protein-coding	2.912	5.295	2.692	4.720	5.221	1.840	2.152	3.440	2.931	4.053	1.034	0.572	2.511	4.252	4.499	5.650	2.859	5.340	0.795	0.431	0.569	0.439	0.387	0.315	3.128
8860	chr2	155651195	155652886	+	0	NA	intron (NM_001163452, intron 8 of 18)	intron (NM_001163452, intron 8 of 18)	29160	NR_030757	735275		NR_030757	ENSMUSG00000076312	Mir499	Mirn499|mir-499|mmu-mir-499	microRNA 499	ncRNA	8.092	8.474	3.180	5.239	5.909	2.591	6.449	13.207	nan	4.653	5.990	2.978	8.659	10.737	7.909	11.799	7.522	5.310	4.779	4.629	3.495	6.420	5.270	4.634	12.238
11311	chr5	66914505	66916839	+	0	NA	intron (NM_001001980, intron 3 of 25)	intron (NM_001001980, intron 3 of 25)	-52744	NM_001256122	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding	4.431	1.686	1.223	3.160	1.228	0.833	3.316	2.338	3.484	3.606	6.085	0.988	3.651	3.442	2.428	3.697	3.987	2.960	1.049	0.963	0.525	nan	0.909	0.570	3.206
10673	chr4	134049215	134054282	+	0	NA	Intergenic	Intergenic	-16704	NM_001162970	230806	Mm.240080	NM_001162970	ENSMUSG00000012123	Aim1l	-	absent in melanoma 1-like	protein-coding	4.793	5.132	1.202	6.797	3.416	2.399	5.819	5.606	nan	4.706	3.331	2.284	4.603	7.463	5.262	6.141	2.895	nan	3.208	2.019	1.427	5.170	nan	1.473	6.856
6756	chr17	56811445	56814768	+	0	NA	intron (NM_027787, intron 1 of 17)	ID_B1|SINE|B4	17902	NM_009056	19725	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	nan	8.170	3.873	6.532	6.240	5.871	7.281	5.687	4.330	6.749	5.102	2.992	4.761	6.020	5.947	7.300	6.152	5.776	5.139	3.374	5.493	5.319	5.036	7.308	9.263
11186	chr5	36915354	36919707	+	0	NA	intron (NM_172994, intron 1 of 8)	intron (NM_172994, intron 1 of 8)	-40651	NR_045505	71054	Mm.444807	NR_045505	ENSMUSG00000087487	Ppp2r2cos	4933401P06Rik	protein phosphatase 2, regulatory subunit B, gamma, opposite strand	ncRNA	9.436	7.856	3.078	6.106	3.801	2.110	8.885	7.379	6.474	7.564	6.340	3.233	8.442	8.660	9.705	8.507	5.891	8.467	2.752	1.447	1.155	1.364	1.139	0.757	8.587
15279	chr9	71553743	71557871	+	0	NA	intron (NM_001033208, intron 5 of 12)	intron (NM_001033208, intron 5 of 12)	36553	NM_001033208	102371	Mm.27585	NM_001033208	ENSMUSG00000041361	Myzap	AA407270|AV006038|Gcom1|Gm640|Grinl1a7|Myozap	myocardial zonula adherens protein	protein-coding	3.620	0.529	0.475	1.337	2.634	1.180	3.918	4.200	3.066	3.598	1.592	1.382	3.385	3.280	nan	4.066	2.981	3.306	nan	1.371	0.653	0.530	1.048	0.647	5.247
10644	chr4	132932867	132937554	+	0	NA	Intergenic	Intergenic	-12659	NM_001163792	230789	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	5.649	1.475	0.789	4.533	4.803	3.068	5.439	4.723	4.190	6.324	2.697	2.280	3.877	8.454	4.411	4.795	3.987	4.348	1.344	2.059	1.277	2.087	1.468	1.485	5.631
1287	chr10	52654183	52655468	+	0	NA	Intergenic	L1Md_T|LINE|L1	-35676	NM_178675	215085	Mm.338690	NM_178675	ENSMUSG00000038602	Slc35f1	Duf6|E130016L02	solute carrier family 35, member F1	protein-coding	4.472	nan	0.429	1.152	1.819	1.262	3.522	2.038	1.578	2.115	0.328	0.395	3.174	3.250	4.121	2.730	4.347	2.783	nan	0.827	0.095	0.192	0.321	0.211	1.172
4650	chr14	48113939	48118725	+	0	NA	Intergenic	L1MB1|LINE|L1	-4537	NM_033602	93834	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	2.442	0.699	0.870	3.341	4.291	3.204	1.343	3.114	4.479	3.388	1.513	2.296	3.005	4.632	3.158	3.803	2.426	3.720	0.997	0.830	0.565	0.722	1.014	1.034	2.811
8378	chr2	75663720	75665066	+	0	NA	intron (NM_146130, intron 8 of 10)	intron (NM_146130, intron 8 of 10)	5103	NR_033513	627828	Mm.459502	NR_033513	ENSMUSG00000092086	Gm6793	EG627828	heterogeneous nuclear ribonucleoprotein A3 pseudogene	pseudo	2.811	0.908	0.285	1.999	0.860	1.010	2.569	3.235	3.423	2.788	0.877	0.947	3.787	4.734	3.013	5.371	4.541	3.022	0.700	0.065	0.328	0.845	0.429	0.334	2.657
10091	chr4	53639584	53640300	+	0	NA	intron (NM_001195284, intron 1 of 12)	intron (NM_001195284, intron 1 of 12)	8471	NM_001195284	319636	Mm.103464	NM_176966	ENSMUSG00000054752	Fsd1l	A230072O16Rik|Ccdc10|Csdufd1|Fsd1nl|OTTMUSG00000007002	fibronectin type III and SPRY domain containing 1-like	protein-coding	2.844	0.742	0.548	0.834	0.587	0.295	1.048	5.220	1.177	1.289	0.131	0.145	1.874	4.244	3.366	2.043	0.782	0.779	3.898	1.840	1.336	3.146	1.957	1.573	3.844
7153	chr18	36500975	36504458	+	0	NA	Intergenic	Intergenic	13089	NM_010415	15200	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	9.342	0.630	0.300	4.087	3.154	1.530	5.639	5.858	5.678	5.381	1.852	1.033	8.394	7.645	6.822	nan	5.586	9.570	0.707	0.767	0.364	0.564	0.525	0.223	11.301
10883	chr4	148144152	148147526	+	0	NA	TTS (NM_027985)	TTS (NM_027985)	1157	NR_105989	102465619		NR_105989	ENSMUSG00000099043	Mir7022	Gm27291|mmu-mir-7022	microRNA 7022	ncRNA	0.350	nan	0.244	0.580	0.338	0.435	0.330	0.492	0.455	0.485	0.509	0.386	0.289	0.459	0.355	0.714	0.291	0.707	2.632	1.147	1.046	4.890	3.618	3.171	0.813
283	chr1	72508401	72512609	+	0	NA	intron (NM_001045533, intron 1 of 3)	intron (NM_001045533, intron 1 of 3)	26059	NM_001045533	381270	Mm.337023	NM_001045533	ENSMUSG00000039372	March4	BC056494|mKIAA1399	membrane-associated ring finger (C3HC4) 4	protein-coding	3.359	0.732	0.275	1.390	1.306	0.650	3.125	3.833	3.132	3.086	3.063	3.334	5.182	4.055	3.155	nan	nan	nan	1.234	0.891	0.474	0.867	0.665	0.646	3.290
11736	chr5	125644933	125646307	+	0	NA	intron (NM_001190352, intron 3 of 8)	RMER4B|LTR|ERVK	113202	NM_001190352	208151	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding	4.002	3.701	0.852	4.887	1.726	1.152	2.265	3.398	2.898	3.319	3.729	2.591	1.983	3.553	nan	3.757	2.095	4.831	nan	1.852	1.239	6.382	3.165	1.996	6.117
13948	chr7	151788760	151807445	+	0	NA	Intergenic	Intergenic	6483267	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	nan	nan	0.381	nan	2.372	1.371	3.844	4.763	nan	5.571	5.704	1.923	5.510	6.357	4.021	4.764	3.241	4.409	0.740	0.625	0.528	1.244	nan	0.353	5.172
7304	chr18	61917986	61922220	+	0	NA	Intergenic	RMER6A|LTR|ERVK	-8251	NM_001164491	319713	Mm.329478	NM_198649	ENSMUSG00000032735	Ablim3	AW990719|D930036B08Rik	actin binding LIM protein family, member 3	protein-coding	3.633	nan	0.278	6.753	1.927	0.808	1.167	1.830	2.782	2.641	0.859	0.794	nan	2.569	2.607	3.457	0.953	6.040	nan	0.785	0.820	nan	0.283	0.143	5.427
12034	chr6	5259571	5260752	+	0	NA	Intergenic	Intergenic	-3928	NM_173006	269823	Mm.9122	NM_173006	ENSMUSG00000029759	Pon3	2810004E20|AI786302	paraoxonase 3	protein-coding	3.056	0.642	0.307	2.299	0.969	0.324	4.806	4.055	1.808	1.673	1.577	0.626	3.675	4.722	3.710	5.844	5.049	2.508	0.498	0.629	0.311	0.697	0.443	0.388	3.344
5860	chr16	19670383	19672640	+	0	NA	intron (NM_177356, intron 5 of 5)	intron (NM_177356, intron 5 of 5)	34854	NM_177356	239739	Mm.258059	NM_177356	ENSMUSG00000041247	Lamp3	1200002D17Rik|Cd208|DC-LAMP|DCLAMP|LAMP|TSC403	lysosomal-associated membrane protein 3	protein-coding	4.231	0.614	0.352	2.451	2.092	0.541	3.337	3.338	3.421	4.683	0.450	0.258	6.645	5.051	4.335	5.026	4.614	5.703	0.756	0.654	0.272	0.226	0.189	0.143	1.983
12986	chr7	20353372	20357961	+	0	NA	TTS (NR_030707)	TTS (NR_030707)	3252	NR_030707	100042966	Mm.431911	NR_030707		Vmn1r-ps79	Gm652	vomeronasal 1 receptor, pseudogene 79	pseudo	8.016	1.327	0.181	6.724	4.173	2.437	8.608	8.952	4.099	7.014	3.151	2.036	6.537	9.612	7.913	9.327	5.841	9.423	2.837	2.569	1.736	5.999	2.497	1.754	14.706
4178	chr13	56848517	56850458	+	0	NA	intron (NM_001302373, intron 3 of 12)	intron (NM_001302373, intron 3 of 12)	46302	NM_001302372	26946	Mm.62409	NM_012035	ENSMUSG00000021541	Trpc7	TRP7|Trrp8	transient receptor potential cation channel, subfamily C, member 7	protein-coding	10.186	0.758	0.274	4.906	2.614	1.093	10.612	10.021	7.612	10.767	3.959	4.536	13.145	12.910	12.540	13.636	8.487	11.489	5.798	2.556	0.854	3.709	6.677	3.461	14.004
3414	chr12	72931474	72935204	+	0	NA	Intergenic	L1VL2|LINE|L1	-6543	NM_011384	20476	Mm.57138	NM_011384	ENSMUSG00000021099	Six6	Optx2|Six9	sine oculis-related homeobox 6	protein-coding	4.981	5.369	1.487	7.668	2.359	1.099	2.710	2.706	4.004	6.741	3.376	1.939	3.874	3.755	5.031	nan	3.337	6.398	3.928	1.428	1.536	4.585	2.267	2.198	11.053
4278	chr13	91302341	91306761	+	0	NA	Intergenic	Intergenic	-80564	NM_025770	66795	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	2.601	0.745	0.609	2.608	2.900	1.173	2.015	2.219	2.838	2.875	9.515	3.891	2.254	4.020	2.663	3.029	2.176	2.924	1.466	1.381	0.963	1.389	1.363	0.721	2.744
14432	chr8	89122109	89123950	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-78867	NM_021390	58198	Mm.214361	NM_021390	ENSMUSG00000031665	Sall1	Msal-3	sal-like 1 (Drosophila)	protein-coding	5.697	0.680	0.608	2.330	1.218	0.202	3.092	9.210	3.010	3.720	0.672	0.216	4.433	4.018	5.045	7.790	4.330	4.671	nan	0.548	0.200	0.827	0.275	0.051	5.964
12227	chr6	50513100	50514207	+	0	NA	Intergenic	ORR1A1-int|LTR|ERVL-MaLR	52821	NM_007808	13063	Mm.35389	NM_007808	ENSMUSG00000063694	Cycs	-	cytochrome c, somatic	protein-coding	1.105	1.276	0.904	0.649	1.171	1.221	1.674	1.793	1.144	0.831	0.523	0.089	1.953	3.622	1.438	2.189	1.746	1.562	nan	0.390	0.674	0.749	0.622	1.099	1.583
15498	chr9	108175193	108179305	+	0	NA	intron (NM_007567, intron 1 of 11)	L1MC5a|LINE|L1	13134	NM_007567	12217	Mm.20425	NM_007567	ENSMUSG00000032589	Bsn	-	bassoon	protein-coding	5.998	0.760	0.678	3.390	3.016	2.421	5.257	3.618	nan	5.662	1.761	1.351	4.174	5.931	4.102	6.123	5.356	nan	0.597	1.577	1.058	0.787	1.088	0.995	nan
10559	chr4	128903274	128930614	+	0	NA	Intergenic	RSINE1|SINE|B4	32804	NM_178110	67525	Mm.30653	NM_178110	ENSMUSG00000041000	Trim62	6330414G21Rik|AI450348|Dear1	tripartite motif-containing 62	protein-coding	5.576	1.309	0.619	4.285	4.688	3.155	7.858	6.995	4.393	6.096	5.343	3.140	6.217	8.389	6.961	8.109	4.288	5.991	2.705	2.041	1.703	3.266	2.189	1.861	9.642
15768	chrX	93188006	93190379	+	0	NA	Intergenic	L1Md_A|LINE|L1	5898	NR_103799	100042663	Mm.291732	NR_103799	ENSMUSG00000095110	1700003E24Rik	ENSMUSG00000067646|Gm14779|OTTMUSG00000017966	Gm5941 pseudogene	pseudo	2.772	0.669	0.270	1.259	2.218	0.715	3.495	4.663	3.672	4.460	0.898	1.433	4.431	5.149	5.660	5.439	3.490	3.246	0.591	0.434	0.375	0.260	0.281	0.079	3.718
12907	chr7	4762799	4765432	+	0	NA	intron (NM_172895, intron 3 of 10)	intron (NM_172895, intron 3 of 10)	7155	NM_172895	243822	Mm.333542	NM_172895	ENSMUSG00000092518	Fam71e2	4930401F20Rik	family with sequence similarity 71, member E2	protein-coding	8.109	15.965	5.537	8.921	6.416	4.414	7.333	8.697	4.996	6.302	5.320	3.119	7.459	9.417	8.941	8.792	6.578	8.421	6.420	4.635	4.400	6.656	5.483	6.236	12.028
7040	chr18	14617025	14618459	+	0	NA	Intergenic	Intergenic	65172	NM_001161369	268996	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	4.999	0.438	0.285	2.030	1.209	0.469	5.375	3.965	2.668	4.047	1.402	1.205	5.854	4.073	3.678	3.023	3.487	4.294	0.665	0.442	0.171	0.714	0.815	0.773	4.560
14321	chr8	73833349	73834927	+	0	NA	Intergenic	B2_Mm1t|SINE|B2	-480598	NM_010687	16795	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	8.192	5.208	2.896	3.427	6.263	4.200	3.198	8.102	3.323	4.218	3.979	1.730	3.867	5.763	3.904	4.307	3.380	3.943	1.266	1.524	1.780	nan	1.054	0.776	4.752
9868	chr3	146514701	146517163	+	0	NA	intron (NM_027371, intron 3 of 8)	intron (NM_027371, intron 3 of 8)	5491	NM_027332	70285	Mm.28128	NM_027332	ENSMUSG00000028187	Rpf1	2210420E24Rik|2310066N05Rik|Bxdc5	ribosome production factor 1 homolog	protein-coding	4.430	0.951	0.317	6.828	3.133	1.669	4.459	3.859	3.829	7.249	2.105	1.763	4.670	6.537	6.208	5.367	2.297	7.287	5.344	1.700	1.077	7.145	2.598	2.264	8.190
11553	chr5	110848896	110851485	+	0	NA	intron (NM_016681, intron 5 of 14)	B4A|SINE|B4	10173	NM_016681	50883	Mm.279308	NM_016681	ENSMUSG00000029521	Chek2	CHK2|Cds1|HUCDS1|Rad53	checkpoint kinase 2	protein-coding	3.247	2.875	1.181	1.871	0.856	0.187	2.859	1.417	2.032	2.283	1.674	1.002	2.523	3.043	2.995	3.306	1.403	2.326	nan	0.656	0.493	1.064	0.874	0.327	5.629
9494	chr3	90415535	90421601	+	0	NA	intron (NM_145540, intron 3 of 29)	intron (NM_145540, intron 3 of 29)	15068	NM_145540	229543	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	5.224	3.990	1.143	5.196	5.485	2.751	9.570	7.804	4.441	5.448	7.551	4.784	8.438	11.979	7.744	8.351	4.255	7.916	nan	1.615	1.183	2.498	2.228	1.399	7.123
7742	chr19	37246650	37250631	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	15455	NR_040299	77059	Mm.251476	NR_040298		4931408D14Rik	-	RIKEN cDNA 4931408D14 gene	ncRNA	6.480	3.006	1.358	6.374	4.690	2.620	1.236	nan	3.892	7.693	0.979	1.180	3.459	5.424	4.127	5.071	7.048	6.548	2.790	3.074	2.848	4.337	5.524	5.813	9.057
9318	chr3	55044726	55047075	+	0	NA	intron (NM_001305221, intron 8 of 8)	intron (NM_001305221, intron 8 of 8)	9155	NM_007628	12427	Mm.4815	NM_007628	ENSMUSG00000027793	Ccna1	-	cyclin A1	protein-coding	2.239	1.807	0.464	3.815	2.761	1.838	1.435	0.931	2.218	4.078	1.975	0.425	1.736	4.641	2.822	3.315	2.362	4.256	0.477	0.537	0.577	0.940	0.712	0.880	6.700
7480	chr19	4330023	4335850	+	0	NA	intron (NM_001001984, intron 12 of 20)	intron (NM_001001984, intron 12 of 20)	-26714	NM_001290818	110355	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	6.309	8.014	4.062	4.102	3.295	1.567	7.600	8.198	3.570	4.361	3.833	3.118	4.170	6.137	5.398	6.299	6.471	5.457	1.575	1.813	0.924	2.259	1.542	1.022	6.898
1744	chr10	114698063	114702151	+	0	NA	intron (NM_146241, intron 2 of 18)	L2|LINE|L2	101263	NM_146241	237553	Mm.445550	NM_146241	ENSMUSG00000050663	Trhde	9330155P21Rik	TRH-degrading enzyme	protein-coding	6.998	0.552	0.708	2.799	5.268	4.609	6.555	6.172	6.925	5.887	1.762	4.503	8.386	8.269	6.643	6.357	7.670	5.694	0.543	1.035	0.665	0.481	0.739	0.677	4.294
12775	chr6	134610069	134623254	+	0	NA	intron (NM_026345, intron 3 of 3)	intron (NM_026345, intron 3 of 3)	15827	NM_026345	67729	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	4.087	0.824	0.566	2.528	3.998	2.656	6.049	8.199	4.158	4.451	1.412	1.650	5.308	7.831	7.002	4.624	4.034	4.665	nan	1.983	1.437	2.927	2.672	2.084	2.713
7683	chr19	29289817	29291342	+	0	NA	intron (NM_001048177, intron 11 of 23)	intron (NM_001048177, intron 11 of 23)	34739	NM_013754	27356	Mm.306511	NM_013754	ENSMUSG00000050957	Insl6	RIF1	insulin-like 6	protein-coding	nan	0.550	0.677	nan	2.111	0.691	2.676	2.962	2.356	2.310	nan	2.124	2.587	3.565	1.478	1.896	2.940	2.505	nan	0.388	0.241	0.552	nan	0.372	1.326
864	chr1	172403209	172404237	+	0	NA	Intergenic	Intergenic	27192	NM_026234	67556	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	7.968	0.716	0.218	1.843	5.216	2.167	4.189	3.671	3.761	4.426	3.862	5.012	4.007	3.605	2.435	3.355	2.188	3.765	0.713	0.313	0.477	nan	nan	0.622	2.028
9669	chr3	106122654	106124191	+	0	NA	intron (NM_023186, intron 5 of 10)	Lx2B2|LINE|L1	10040	NM_023186	81600	Mm.46418	NM_023186	ENSMUSG00000062778	Chia1	2200003E03Rik|AMCase|Chia|YNL	chitinase, acidic 1	protein-coding	2.689	0.400	0.429	1.832	0.682	0.392	2.611	2.441	3.029	2.632	1.470	0.526	4.453	3.781	nan	3.264	4.839	4.117	0.539	0.222	0.080	0.194	0.241	0.008	1.007
1170	chr10	22417903	22419637	+	0	NA	Intergenic	MTA_Mm|LTR|ERVL-MaLR	15957	NR_028580	100038752	Mm.392859	NR_028580	ENSMUSG00000096937	Gm10825	ENSMUSG00000075295	predicted gene 10825	ncRNA	4.776	0.552	0.076	2.981	3.635	1.673	4.630	3.754	3.009	2.740	4.466	3.504	3.025	3.866	3.072	4.142	3.820	4.204	2.297	2.169	1.265	1.837	2.397	1.596	5.792
7638	chr19	21936749	21938681	+	0	NA	Intergenic	Intergenic	159375	NM_031997	83921	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	4.949	2.741	1.583	2.365	2.482	1.618	7.604	6.308	3.520	3.768	5.180	3.302	6.324	4.894	5.884	5.826	3.628	6.007	0.955	0.495	0.571	0.751	0.474	0.250	3.784
14964	chr9	37165784	37168613	+	0	NA	Intergenic	B3|SINE|B2	-19876	NM_001029838	208076	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	4.666	1.432	1.003	3.783	1.604	0.453	3.102	1.377	3.207	3.255	0.849	0.617	4.621	3.815	3.740	5.903	3.731	6.023	nan	0.878	0.393	0.420	0.609	0.489	6.316
11597	chr5	115221415	115226134	+	0	NA	Intergenic	Intergenic	-12077	NM_026398	117109	Mm.24636	NM_026398	ENSMUSG00000060152	Pop5	1500019J17Rik|2700077E03Rik|AW049989|Rnasep3	processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)	protein-coding	8.048	11.035	3.758	9.074	3.478	2.415	5.637	5.544	4.718	11.312	6.179	3.587	5.164	7.168	7.504	8.039	4.449	7.320	4.927	nan	3.166	4.432	nan	4.045	12.247
11571	chr5	112771832	112773041	+	0	NA	intron (NM_028901, intron 34 of 43)	intron (NM_028901, intron 34 of 43)	-20856	NR_040675	67360	Mm.59218	NR_040675	ENSMUSG00000098230	1700095B10Rik	-	RIKEN cDNA 1700095B10 gene	ncRNA	7.847	11.295	3.010	8.784	5.565	4.935	6.654	6.962	5.691	10.414	4.384	3.537	5.256	6.319	8.221	10.008	4.877	7.794	4.086	2.296	4.553	5.614	4.060	5.331	11.919
14941	chr9	32030120	32032866	+	0	NA	Intergenic	Intergenic	-84643	NM_001195632	330914	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	3.087	1.265	0.697	3.279	1.311	0.586	3.018	4.760	3.375	2.829	6.928	3.971	3.403	3.368	3.926	3.591	1.817	5.184	3.869	1.636	0.768	5.158	2.753	1.336	3.564
11585	chr5	114336513	114337767	+	0	NA	intron (NM_001164573, intron 12 of 30)	(TG)n|Simple_repeat|Simple_repeat	22199	NM_001164573	231646	Mm.238285	NM_146163	ENSMUSG00000066952	Myo1h	4631401O15Rik	myosin 1H	protein-coding	2.069	1.099	0.523	2.404	2.109	1.941	3.204	2.988	2.191	1.813	1.024	1.429	2.122	3.558	2.424	2.458	2.234	2.251	1.936	nan	1.757	0.791	nan	0.943	2.142
9561	chr3	96354515	96373163	+	0	NA	Intergenic	LTRIS2|LTR|ERV1	50994	NR_001579	21748		NR_001579	ENSMUSG00000064796	Terc	mTER|mTR	telomerase RNA component	ncRNA	9.750	7.686	3.568	11.641	9.202	6.307	8.652	8.154	7.418	9.097	nan	3.588	8.494	12.165	8.114	7.870	7.776	9.493	5.487	4.342	4.050	5.178	6.167	5.123	8.879
8307	chr2	65410943	65413077	+	0	NA	Intergenic	Intergenic	-47610	NR_105755	102466151		NR_105755	ENSMUSG00000099184	Mir6337	Gm27877|mmu-mir-6337	microRNA 6337	ncRNA	0.873	0.247	0.516	0.429	0.184	0.124	0.672	0.925	0.452	0.366	0.447	0.670	0.695	0.452	1.207	0.823	1.067	0.950	5.265	4.998	2.353	7.118	4.426	3.385	0.869
1686	chr10	98853023	98856150	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-60566	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	1.851	1.593	2.178	0.964	1.708	1.835	1.302	1.206	1.628	1.319	5.112	2.565	0.855	1.509	1.738	1.246	1.034	1.451	nan	1.952	1.554	nan	1.264	1.246	0.948
15841	chrX	147954647	147957168	+	0	NA	Intergenic	Intergenic	-37086	NM_001198988	666184	Mm.422381	NM_001198988	ENSMUSG00000072931	Gm15080	OTTMUSG00000018964|Ott-like	predicted gene 15080	protein-coding	5.270	7.564	2.494	5.724	4.097	1.385	3.308	4.244	3.272	6.216	4.722	2.076	3.142	6.049	4.481	6.220	3.160	4.895	3.751	2.195	2.140	3.678	2.670	2.849	7.830
14907	chr9	21554206	21559133	+	0	NA	intron (NM_153141, intron 1 of 14)	B1_Mus2|SINE|Alu	9775	NM_153141	59035	Mm.178115	NM_021531	ENSMUSG00000032185	Carm1	Prmt4	coactivator-associated arginine methyltransferase 1	protein-coding	4.189	1.757	0.748	6.033	3.150	2.757	4.068	5.207	4.188	5.608	3.142	1.529	5.830	7.589	5.615	7.965	4.352	6.861	3.046	1.774	1.805	2.927	2.134	2.146	8.264
13150	chr7	51591456	51592847	+	0	NA	intron (NM_001271879, intron 20 of 20)	ORR1A4|LTR|ERVL-MaLR	-29679	NM_080853	140919	Mm.256618	NM_080853	ENSMUSG00000030500	Slc17a6	2900073D12Rik|DNPI|VGLUT2	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6	protein-coding	0.039	0.319	0.091	0.128	0.069	0.087	0.098	0.138	0.129	0.367	0.058	0.145		0.224	0.105	0.252	0.195	0.229	4.382	4.655	3.812	4.095	5.881	5.671	0.287
4817	chr14	70565605	70581011	+	0	NA	3' UTR (NM_021877, exon 20 of 20)	3' UTR (NM_021877, exon 20 of 20)	-4539	NM_153136	213484	Mm.34191	NM_153136	ENSMUSG00000045211	Nudt18	BC036718	nudix (nucleoside diphosphate linked moiety X)-type motif 18	protein-coding	6.440	6.134	1.999	7.213	4.881	2.954	5.791	9.348	5.652	9.008	5.272	2.758	5.381	10.608	5.731	8.088	4.011	8.381	1.389	nan	1.393	2.145	0.957	0.943	8.877
4745	chr14	63496531	63500037	+	0	NA	intron (NM_021480, intron 2 of 8)	intron (NM_021480, intron 2 of 8)	10808	NM_021480	58865	Mm.354229	NM_021480	ENSMUSG00000021953	Tdh	-	L-threonine dehydrogenase	protein-coding	3.818	1.630	0.597	3.723	2.695	0.865	2.216	5.994	2.352	2.236	2.092	1.238	3.023	4.880	3.953	4.564	2.557	3.332	1.709	nan	0.552	2.590	0.849	0.623	4.562
13239	chr7	65931505	65933335	+	0	NA	intron (NM_011048, intron 6 of 21)	intron (NM_011048, intron 6 of 21)	70284	NM_011048	18553	Mm.294007	NM_011048	ENSMUSG00000030513	Pcsk6	C86343|Pace4|SPC4	proprotein convertase subtilisin/kexin type 6	protein-coding	4.351	1.872	0.883	3.003	1.552	0.803	1.757	6.400	3.624	4.269	2.728	2.822	2.726	4.443	5.237	5.215	2.391	2.842	0.701	0.539	0.470	0.631	0.227	0.159	3.466
4143	chr13	53405000	53406538	+	0	NA	intron (NR_037991, intron 4 of 7)	MTC|LTR|ERVL-MaLR	12080	NR_037991	100040421	Mm.83967	NR_037991	ENSMUSG00000107008	Gm2762	1700025I17Rik	predicted gene 2762	ncRNA	nan	0.547	0.511	0.848	0.696	0.692	0.815	0.389	0.750	0.524	0.322	0.400	0.928	nan	0.679	nan	0.897	nan	3.802	1.999	2.364	3.312	5.469	4.328	nan
14009	chr8	11521842	11523391	+	0	NA	intron (NM_024248, intron 9 of 14)	Lx4B|LINE|L1	25048	NM_026995	69225	Mm.64911	NM_026995	ENSMUSG00000031505	Naxd	0710008K08Rik|2810407E01Rik|Carkd	NAD(P)HX dehydratase	protein-coding	2.620	0.643	0.453	2.254	1.223	0.214	1.335	3.888	1.327	1.696	0.992	0.408	4.214	3.321	3.381	4.801	4.624	2.688	2.569	2.160	1.583	5.430	2.970	1.528	4.090
12836	chr6	144594345	144597787	+	0	NA	Intergenic	Intergenic	-76802	NR_040519	66760	Mm.233631	NR_040519	ENSMUSG00000085785	Sox5os3	4933425H06Rik	SRY (sex determining region Y)-box 5, opposite strand 3	ncRNA	6.903	0.896	0.531	nan	6.294	3.398	7.332	3.036	3.564	4.409	0.808	0.735	nan	5.935	4.930	7.719	5.791	7.111	0.729	nan	0.617	nan	0.732	0.492	4.186
8010	chr2	24999615	25002197	+	0	NA	intron (NM_146251, intron 12 of 34)	intron (NM_146251, intron 12 of 34)	24873	NM_146251	241274	Mm.389243	NM_146251	ENSMUSG00000036833	Pnpla7	BC027342|E430013P11Rik|Nre	patatin-like phospholipase domain containing 7	protein-coding	4.662	1.826	0.377	6.504	1.646	0.538	4.070	8.913	3.137	2.825	1.405	2.522	3.175	2.679	5.790	5.865	2.480	6.366	0.501	0.936	0.381	1.262	0.365	0.331	5.755
5837	chr16	17344275	17348795	+	0	NA	intron (NM_001001983, intron 19 of 54)	Lx5b|LINE|L1	15164	NM_001331047	15160	Mm.6609	NM_008223	ENSMUSG00000022766	Serpind1	AA985900|AI303446|HC-II|HCII|Hcf2	serine (or cysteine) peptidase inhibitor, clade D, member 1	protein-coding	4.683	1.401	0.949	2.372	2.510	1.408	8.978	6.496	3.214	3.862	0.609	0.886	6.197	4.292	5.050	7.081	4.841	5.380	0.757	1.033	1.044	0.667	0.791	0.814	3.189
1674	chr10	98251977	98254883	+	0	NA	Intergenic	MTC|LTR|ERVL-MaLR	98437	NR_045179	667438	Mm.414522	NR_045179		Gm8633	EG667438	predicted gene 8633	ncRNA	5.960	1.059	0.793	3.024	2.695	2.021	4.799	4.037	4.526	3.449	5.834	2.917	5.025	3.740	4.171	5.606	6.125	5.724	nan	0.966	1.032	nan	1.100	0.640	2.846
11980	chr5	149775763	149781708	+	0	NA	Intergenic	URR1B|DNA|hAT-Charlie	33016	NR_077242	100861794	Mm.402054	NR_077242	ENSMUSG00000106740	Gm21221	-	predicted gene, 21221	ncRNA	4.630	1.712	1.046	nan	3.422	1.790	6.220	5.796	nan	3.928	2.653	2.891	4.388	7.187	6.395	nan	4.357	3.965	1.958	1.639	0.965	1.384	2.107	1.684	nan
1065	chr1	196476247	196479990	+	0	NA	Intergenic	Intergenic	-1301403	NM_007758	12902	Mm.235387	NM_007758	ENSMUSG00000026616	Cr2	C3DR|CD21|CD35|Cr-1|Cr-2|Cr1	complement receptor 2	protein-coding	9.108	0.994	0.532	6.992	6.192	2.305	6.066	6.548	6.451	7.310	4.132	2.169	8.416	10.001	6.818	10.270	5.241	10.452	1.079	0.829	0.376	1.203	nan	0.614	5.800
5862	chr16	19695889	19701910	+	0	NA	intron (NM_177356, intron 3 of 5)	Lx2B2|LINE|L1	7466	NM_177356	239739	Mm.258059	NM_177356	ENSMUSG00000041247	Lamp3	1200002D17Rik|Cd208|DC-LAMP|DCLAMP|LAMP|TSC403	lysosomal-associated membrane protein 3	protein-coding	5.897	0.415	0.530	3.279	8.107	7.068	6.019	3.056	5.111	nan	0.435	0.670	7.205	6.200	4.869	6.411	7.079	7.951	0.601	0.868	0.834	0.263	0.911	1.014	4.198
9089	chr2	178327930	178331433	+	0	NA	intron (NM_001007154, intron 9 of 12)	intron (NM_001007154, intron 9 of 12)	77977	NM_177191	320558	Mm.70781	NM_177191	ENSMUSG00000060445	Sycp2	3830402K23Rik|4930518F03Rik	synaptonemal complex protein 2	protein-coding	2.749	0.479	0.085	0.828	1.171	0.906	1.319	1.170	1.088	0.848	0.575	0.314	1.070	1.063	2.136	nan	2.938	nan	6.053	2.273	1.637	3.386	5.313	4.043	nan
8761	chr2	146400890	146403564	+	0	NA	intron (NM_001033348, intron 21 of 40)	intron (NM_001033348, intron 21 of 40)	109777	NM_001033348	241694	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	5.274	0.580	0.340	3.303	2.657	1.677	7.670	9.033	2.414	2.975	1.123	0.626	8.702	5.777	4.434	8.868	10.859	3.612	nan	1.011	0.655	1.007	1.276	1.396	5.412
15550	chr9	116095597	116097122	+	0	NA	intron (NM_009371, intron 6 of 7)	intron (NM_009371, intron 6 of 7)	79004	NM_029575	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	3.155	1.704	0.515	0.974	0.855	0.649	2.247	3.176	2.478	3.390	2.812	1.048	2.227	4.587	2.472	4.002	1.960	5.288	0.669	0.410	0.326	0.687	nan	0.101	4.134
14687	chr8	122808240	122818606	+	0	NA	intron (NM_144932, intron 8 of 9)	intron (NM_144932, intron 8 of 9)	-34951	NM_007662	12555	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.948	0.733	0.313	1.478	0.718	0.461	1.001	2.767	0.677	0.855	0.347	0.453	1.147	2.153	1.204	nan	0.718	1.105	2.364	2.020	1.743	6.264	1.435	1.303	1.493
4396	chr13	110117511	110124901	+	0	NA	intron (NM_023852, intron 3 of 4)	intron (NM_023852, intron 3 of 4)	159000	NM_023852	67295	Mm.151600	NM_023852	ENSMUSG00000021700	Rab3c	2700062I01Rik|3110015B08Rik|3110037E15Rik|AI850886	RAB3C, member RAS oncogene family	protein-coding	nan	nan	0.422	2.094	2.054	1.190	2.414	2.404	3.517	3.909	0.938	1.073	3.873	5.000	2.765	3.600	2.414	3.140	1.633	1.090	0.547	nan	1.167	0.935	1.911
84	chr1	34537855	34541881	+	0	NA	intron (NM_007685, intron 5 of 5)	MTB_Mm|LTR|ERVL-MaLR	4220	NM_007685	12627	Mm.2531	NM_007685	ENSMUSG00000026124	Cfc1	AV265756|b2b970Clo|cryptic	cripto, FRL-1, cryptic family 1	protein-coding	2.872	10.945	7.947	1.790	1.199	0.887	1.306	1.582	1.468	0.999	0.977	0.897	1.722	1.289	1.287	2.108	1.809	1.394	1.686	1.949	1.323	2.098	1.363	1.205	2.469
6002	chr16	32515549	32517337	+	0	NA	Intergenic	Intergenic	20162	NM_199309	245308	Mm.76859	NM_199309	ENSMUSG00000052363	Zdhhc19	Gm1744|Gm616	zinc finger, DHHC domain containing 19	protein-coding	1.388	2.311	1.232	1.383	1.811	1.308	1.804	2.442	1.385	1.353	0.812	1.278	nan	2.488	2.640	2.089	2.607	1.605	9.180	2.550	4.594	7.042	9.132	9.303	2.061
4068	chr13	45810650	45815158	+	0	NA	intron (NM_001199304, intron 3 of 6)	Lx8|LINE|L1	152087	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	3.947	1.002	0.379	nan	2.012	1.052	1.732	2.959	2.077	2.933	1.109	0.508	2.149	3.427	3.451	4.321	2.363	4.137	0.717	nan	0.386	0.597	0.460	0.296	4.263
437	chr1	92529234	92531892	+	0	NA	Intergenic	Intergenic	-12048	NM_147039	259041	Mm.223424	NM_147039	ENSMUSG00000042849	Olfr1414	MOR103-2	olfactory receptor 1414	protein-coding	2.470	0.352	0.293	2.140	2.914	1.664	3.338	2.684	1.934	3.137	1.444	1.022	4.581	5.790	2.514	4.556	2.055	2.468	0.321	0.205	0.184	nan	0.461	0.179	2.696
2749	chr11	98643911	98651679	+	0	NA	intron (NM_029727, intron 2 of 10)	C-rich|Low_complexity|Low_complexity	1036	NM_029727	76758	Mm.159149	NM_029727	ENSMUSG00000017211	Gsdma2	2200001G21Rik|2210006M16Rik|2210009F20Rik|2210411P14Rik|Gsdm2|Gsdml2	gasdermin A2	protein-coding	7.045	3.805	1.592	5.791	5.072	3.383	6.824	6.210	4.232	4.658	3.032	2.139	6.132	9.442	7.092	7.351	6.177	5.641	2.173	nan	1.776	2.458	nan	nan	6.671
1768	chr10	116755122	116763469	+	0	NA	Intergenic	Intergenic	30042	NR_131036	75878	Mm.370607	NR_131036		4930579P08Rik	-	RIKEN cDNA 4930579P08 gene	ncRNA	5.886	1.322	1.080	4.057	3.440	2.584	3.860	4.480	4.946	5.267	1.055	0.541	6.138	6.786	6.127	7.095	6.895	nan	1.497	1.319	1.042	1.218	0.925	0.776	6.561
6429	chr17	26547671	26567865	+	0	NA	Intergenic	L1_Mus3|LINE|L1	-3744	NM_026170	67458	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	2.800	1.986	0.843	2.102	0.684	0.427	4.106	3.374	1.352	2.043	1.448	0.966	3.798	3.132	4.028	nan	3.394	2.911	6.479	3.587	3.167	8.336	4.024	3.421	7.308
8015	chr2	25078802	25084862	+	0	NA	exon (NM_028093, exon 2 of 10)	exon (NM_028093, exon 2 of 10)	1509	NM_028093	72090	Mm.33403	NM_028093	ENSMUSG00000036813	Entpd8	-	ectonucleoside triphosphate diphosphohydrolase 8	protein-coding	7.472	5.849	2.081	6.143	3.827	2.705	4.466	8.860	nan	5.590	6.002	3.535	6.182	7.032	6.047	8.052	6.100	6.009	5.603	3.389	3.827	8.572	3.499	3.240	9.927
12959	chr7	19594970	19598208	+	0	NA	intron (NM_016680, intron 2 of 20)	B4A|SINE|B4	7772	NR_125835	53609	Mm.20913	NM_016680	ENSMUSG00000061028	Clasrp	Clasp|Sfrs16|Srsf16|Swap2	CLK4-associating serine/arginine rich protein	protein-coding	3.526	1.905	0.897	2.757	3.696	1.990	6.491	8.455	2.138	4.261	1.659	1.602	5.605	6.215	5.126	4.406	3.906	4.576	1.850	1.723	2.430	2.896	4.903	4.366	5.872
8309	chr2	68109412	68111134	+	0	NA	intron (NM_020283, intron 1 of 1)	intron (NM_020283, intron 1 of 1)	5601	NM_020283	26877	Mm.226435	NM_020283	ENSMUSG00000034780	B3galt1	beta3Gal-T1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	protein-coding	5.110	0.843	0.186	2.139	1.329	0.984	7.881	4.137	2.718	3.884	0.973	0.223	7.848	4.757	5.194	9.204	9.278	4.506	0.755	1.137	0.751	0.574	0.614	0.612	5.983
9216	chr3	30893513	30903360	+	0	NA	TTS (NM_153421)	TTS (NM_153421)	42486	NM_001286994	71862	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	6.181	2.124	0.868	5.590	6.130	3.719	6.846	6.187	5.864	6.204	6.416	2.844	8.114	10.132	6.958	7.160	6.009	8.264	1.539	1.322	1.089	1.856	1.049	0.793	7.063
6781	chr17	64994382	64996126	+	0	NA	Intergenic	Intergenic	-159183	NM_030031	78057	Mm.109380	NM_030031	ENSMUSG00000024088	4930583I09Rik	-	RIKEN cDNA 4930583I09 gene	protein-coding	2.114	0.970	0.999	0.825	2.002	0.784	1.852	2.572	1.458	2.102	4.648	2.874	1.113	1.253	1.582	1.914	1.635	1.158	3.428	4.071	2.254	5.116	5.608	3.656	3.035
1021	chr1	191978442	191984982	+	0	NA	intron (NM_001303132, intron 1 of 2)	intron (NM_001303132, intron 1 of 2)	3458	NM_001303132	74023	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding	0.507	0.285	0.218	0.244	0.356	0.263	0.389	1.700	0.337	0.358	0.263	0.263	0.274	0.378	0.362	nan	0.612	0.395	6.036	4.576	2.865	8.514	5.048	3.904	0.337
6325	chr17	8522500	8524104	+	0	NA	Intergenic	Intergenic	-3499	NM_001290707	23984	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.479	0.775	0.082	0.833	0.957	0.151	1.200	0.465	0.517	0.488	0.390	0.556	2.377	4.280	1.112	nan	nan	1.110	nan	0.324	0.306	1.811	0.329		1.546
5094	chr15	31382399	31383786	+	0	NA	Intergenic	L1VL2|LINE|L1	-15333	NM_027496	67434	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	8.478	6.638	2.647	6.808	1.996	1.463	8.864	12.230	5.664	6.258	5.370	4.721	12.053	9.714	11.120	11.050	11.517	8.995	3.318	0.955	0.454	5.193	2.036	1.595	9.616
6595	chr17	35479140	35480927	+	0	NA	Intergenic	MMVL30-int|LTR|ERV1	9944	NM_010391	15007	Mm.88795	NM_010391	ENSMUSG00000067235	H2-Q10	H-2Q10|Q10|Qa10	histocompatibility 2, Q region locus 10	protein-coding	3.408	4.958	1.500	4.160	1.860	1.210	3.746	5.103	2.659	4.123	0.446	0.998	4.077	4.686	5.938	8.208	2.863	5.063	3.661	1.059	1.158	1.716	0.844	1.074	13.115
4212	chr13	63184746	63188686	+	0	NA	intron (NM_001289926, intron 7 of 15)	intron (NM_001289926, intron 7 of 15)	-53313	NR_110520	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.997	0.356	0.453	0.696	1.437	1.383	0.774	1.361	0.914	0.974	1.303	1.105	0.435	1.046	0.561	nan	0.802	0.957	3.875	3.007	3.008	1.333	7.416	8.911	0.710
934	chr1	181972998	181976149	+	0	NA	intron (NM_001083121, intron 1 of 13)	intron (NM_001083121, intron 1 of 13)	45407	NM_008680	13800	Mm.87759	NM_008680	ENSMUSG00000022995	Enah	Mena|NDPP-1|Ndpp1|WBP8	enabled homolog (Drosophila)	protein-coding	4.695	0.614	0.457	1.976	1.704	0.812	3.079	1.077	3.700	5.082	0.583	0.482	4.893	3.440	3.337	6.213	5.563	3.902	1.049	0.812	0.350	0.566	0.418	0.330	2.737
9420	chr3	86027755	86029778	+	0	NA	Intergenic	Intergenic	-26275	NM_001001650	368202	Mm.253822	NM_001001650	ENSMUSG00000049013	Prss48	Esspl|Gm1019	protease, serine 48	protein-coding	6.323	10.367	2.476	11.033	3.579	2.425	7.274	6.371	4.546	11.941	6.586	4.284	7.488	7.594	9.804	9.363	4.826	9.805	7.415	3.270	4.124	8.493	5.364	6.142	14.854
6451	chr17	27376329	27380313	+	0	NA	Intergenic	Intergenic	20224	NR_106077	102466228		NR_106077	ENSMUSG00000106215	Mir7218	mmu-mir-7218	microRNA 7218	ncRNA	1.599	2.034	0.814	1.942	0.597	0.218	0.544	0.809	0.869	1.383	0.336	0.602	0.722	1.556	1.360	nan	1.650	2.183	7.579	4.397	4.013	8.668	5.357	4.514	2.950
5990	chr16	31325373	31327743	+	0	NA	Intergenic	Intergenic	-11750	NM_001301354	11815	Mm.2082	NM_007470	ENSMUSG00000022548	Apod	-	apolipoprotein D	protein-coding	2.933	1.156	0.278	4.716	1.684	0.420	0.939	1.196	1.688	1.834	1.124	0.451	nan	1.558	1.518	2.606	1.142	2.636	0.670	0.787	0.199	0.884	nan	0.159	1.778
11902	chr5	141242760	141248547	+	0	NA	intron (NM_177879, intron 1 of 44)	intron (NM_177879, intron 1 of 44)	4119	NM_177879	330222	Mm.151931	NM_177879	ENSMUSG00000039683	Sdk1	5330440E10|6720466O15Rik	sidekick cell adhesion molecule 1	protein-coding	5.475	5.890	2.936	4.562	3.731	1.988	1.836	1.657	2.669	3.267	2.581	1.788	1.584	2.625	2.314	2.583	1.742	3.494	5.348	3.709	3.436	4.824	nan	4.411	3.308
3537	chr12	82632991	82634146	+	0	NA	intron (NM_001282061, intron 1 of 16)	intron (NM_001282061, intron 1 of 16)	16069	NM_001282061	50779	Mm.126176	NM_015812	ENSMUSG00000021219	Rgs6	-	regulator of G-protein signaling 6	protein-coding	10.281	7.440	2.913	6.125	3.564	1.137	3.892	3.871	4.073	4.728	4.561	2.972	5.532	6.160	6.920	8.124	4.987	5.794	3.572	3.007	2.325	4.996	2.934	2.146	13.194
14346	chr8	75815004	75816735	+	0	NA	intron (NM_001164235, intron 12 of 13)	L1_Mus1|LINE|L1	367175	NM_001164235	71831	Mm.443238	NM_027944	ENSMUSG00000031620	1700007B14Rik	-	RIKEN cDNA 1700007B14 gene	protein-coding	2.974	nan	0.586	2.425	3.544	2.643	nan	1.099	1.855	2.300	1.147	0.359	1.408	4.730	2.702	3.835	1.795	4.569	0.513	0.744	0.273	nan	0.844	0.601	3.815
4821	chr14	70738260	70745532	+	0	NA	intron (NM_023045, intron 1 of 27)	RMER19B2|LTR|ERVK	24732	NM_023045	65246	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|mKIAA0745	exportin 7	protein-coding	2.308	1.776	0.873	1.321	1.279	0.832	2.320	6.035	1.376	1.633	2.064	2.747	1.534	2.187	1.436	2.117	1.083	1.967	0.902	nan	0.702	3.016	0.804	0.767	1.325
14002	chr8	11342440	11373809	+	0	NA	intron (NM_009932, intron 4 of 47)	intron (NM_009932, intron 4 of 47)	-45298	NM_009931	12826	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	5.964	1.243	0.723	4.536	4.730	2.671	4.782	5.670	4.970	5.859	1.718	1.150	6.500	6.983	6.803	9.039	5.784	7.609	0.699	0.718	0.655	1.004	0.500	0.334	8.190
948	chr1	182471775	182474101	+	0	NA	exon (NM_009794, exon 17 of 21)	exon (NM_009794, exon 17 of 21)	44545	NM_009794	12334	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0.596	12.467	7.823	0.754	0.695	0.317	0.424	0.368	0.576	0.912	0.276	0.192	0.261	nan	0.643	1.071	0.976	0.769	0.662	0.890	0.846	0.378	0.667	0.626	0.594
8239	chr2	50545113	50546796	+	0	NA	Intergenic	Lx|LINE|L1	249144	NR_040362	100502624	Mm.382825	NR_040361	ENSMUSG00000085862	Gm13483	OTTMUSG00000012382	predicted gene 13483	ncRNA	1.998	3.280	2.100	2.173	2.113	1.222	1.287	3.275	1.248	nan	5.531	0.822	0.524	2.041	0.895	0.871	0.773	0.754	0.488	0.951	0.655	0.440	0.359	0.243	1.165
8361	chr2	73253068	73256619	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-17083	NM_001005343	381373	Mm.330293	NM_001005343	ENSMUSG00000068859	Sp9	-	trans-acting transcription factor 9	protein-coding	3.117	0.667	0.352	nan	0.515	0.137	0.965	1.753	2.734	2.351	2.760	0.709	1.647	1.245	1.644	2.211	1.671	2.280	3.811	1.512	0.905	5.516	2.154	1.824	2.964
14864	chr9	14324417	14328849	+	0	NA	TTS (NM_030261)	TTS (NM_030261)	50332	NM_030261	75747	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	4.108	0.946	0.266	2.712	1.466	0.689	3.015	2.536	2.657	3.139	2.459	1.306	4.843	4.657	3.844	5.036	2.396	4.206	0.849	0.480	0.369	0.836	0.591	0.416	6.550
9768	chr3	121993241	121996965	+	0	NA	intron (NM_172525, intron 12 of 22)	intron (NM_172525, intron 12 of 22)	41777	NM_172525	214137	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	8.759	5.265	1.662	9.038	3.222	2.593	6.740	8.489	5.577	10.693	6.268	5.417	6.915	9.892	8.296	9.218	6.347	9.706	3.110	1.820	1.538	3.886	nan	2.433	10.789
6827	chr17	71508290	71509535	+	0	NA	intron (NM_023294, intron 10 of 16)	intron (NM_023294, intron 10 of 16)	17945	NM_023294	67052	Mm.225956	NM_023294	ENSMUSG00000024056	Ndc80	2610020P18Rik|AV139730|HEC|HEC1|Kntc2	NDC80 kinetochore complex component	protein-coding	2.895	1.062	0.581	2.562	1.893	0.675	4.543	2.939	2.913	3.003	5.867	1.355	4.287	4.066	6.068	7.104	3.255	3.517	0.937	0.096	0.178	0.828	0.400	0.139	4.688
14549	chr8	108525266	108529552	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	57268	NR_077224	109215	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	2.320	0.853	0.624	1.227	2.374	1.699	0.969	2.601	1.281	0.988	0.890	0.687	1.072	2.303	1.173	1.241	1.495	1.282	2.419	1.870	1.312	nan	7.004	7.076	0.944
14047	chr8	13620075	13621375	+	0	NA	intron (NM_009025, intron 2 of 23)	intron (NM_009025, intron 2 of 23)	56862	NM_009025	19414	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	4.154	3.530	1.436	4.595	1.544	1.604	0.620	5.368	2.470	4.005	3.551	1.716	2.059	3.998	1.607	2.144	1.540	2.710	1.033	1.986	1.407	4.563	0.548	0.555	2.457
10520	chr4	125842215	125847604	+	0	NA	Intergenic	(TGGA)n|Simple_repeat|Simple_repeat	77401	NR_015560	72395	Mm.112888	NR_015560	ENSMUSG00000085562	2610028E06Rik	BB043107	RIKEN cDNA 2610028E06 gene	ncRNA	4.064	0.807	0.633	4.636	6.339	5.051	4.004	5.092	5.661	7.055	3.753	2.195	4.012	8.114	nan	3.896	2.208	5.032	1.564	1.789	1.231	2.088	1.705	1.921	4.215
226	chr1	60153978	60156019	+	0	NA	Intergenic	Intergenic	-25601	NM_173444	269198	Mm.205224	NM_173444	ENSMUSG00000073664	Nbeal1	2310076G13Rik|A530050O19Rik|A530083I02Rik|AI662228|ALS2CR17	neurobeachin like 1	protein-coding	7.957	9.065	3.483	9.111	3.106	1.821	5.866	5.888	4.519	9.053	6.127	4.022	8.086	7.239	8.493	11.650	7.179	8.696	5.391	2.065	1.861	5.434	1.974	2.543	11.019
15190	chr9	64089371	64092006	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	9927	NR_040743	76814	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	4.367	6.728	6.102	2.895	2.881	2.715	1.864	2.617	3.030	3.488	1.609	1.617	2.624	4.055	nan	2.956	3.838	3.131	2.562	3.983	3.950	3.086	2.078	2.259	3.742
4296	chr13	96094437	96103302	+	0	NA	intron (NM_029210, intron 1 of 12)	intron (NM_029210, intron 1 of 12)	33708	NM_029210	75209	Mm.40436	NM_029210	ENSMUSG00000051111	Sv2c	4930527L09Rik|AI841971	synaptic vesicle glycoprotein 2c	protein-coding	3.284	3.319	1.485	3.230	2.296	1.724	3.300	3.591	2.968	3.561	2.836	2.366	3.261	3.453	3.717	4.234	nan	nan	8.403	4.023	2.833	8.440	6.483	5.401	5.425
14770	chr8	126863527	126865399	+	0	NA	Intergenic	Intergenic	81458	NM_024214	67952	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding	4.347	nan	0.318	2.076	0.902	0.446	nan	5.656	1.547	2.163	1.755	1.630	4.925	3.388	nan	2.894	4.666	3.041	nan	0.733	0.786	1.982	0.559	nan	5.256
4982	chr14	121782633	121783675	+	0	NA	intron (NM_134074, intron 1 of 52)	intron (NM_134074, intron 1 of 52)	14580	NM_134074	105445	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	1.373	0.392	0.503	1.053	0.914	0.370	1.327	5.434	1.480	1.084	0.823	0.522	1.252	3.255	nan	1.873	0.585	1.915	1.701	0.363	0.449	2.079	1.702	0.907	1.608
1430	chr10	74971831	74981451	+	0	NA	intron (NM_010311, intron 1 of 3)	L2|LINE|L2	9410	NM_010311	14687	Mm.32595	NM_010311	ENSMUSG00000040009	Gnaz	AI847979|Gz	guanine nucleotide binding protein, alpha z subunit	protein-coding	4.261	4.218	1.444	nan	1.736	0.868	2.202	2.681	2.120	3.090	2.474	1.475	2.129	3.288	nan	3.612	2.104	3.504	nan	2.560	1.621	7.140	2.724	2.050	4.799
7473	chr19	4133744	4138462	+	0	NA	intron (NM_144532, intron 5 of 5)	intron (NM_144532, intron 5 of 5)	3506	NM_144532	73660	Mm.379226	NM_144532	ENSMUSG00000024842	Cabp4	2410038D05Rik	calcium binding protein 4	protein-coding	1.339	10.312	5.508	1.418	1.193	0.834	1.069	1.368	nan	0.907	0.633	0.829	0.552	1.144	0.957	nan	1.288	1.343	0.551	1.143	1.327	0.760	0.895	0.759	0.981
1145	chr10	19886017	19890871	+	0	NA	intron (NM_001161825, intron 5 of 8)	intron (NM_001161825, intron 5 of 8)	19230	NM_008822	18634	Mm.338363	NM_008822	ENSMUSG00000020003	Pex7	MmPEX7	peroxisomal biogenesis factor 7	protein-coding	5.775	1.073	0.560	2.154	3.206	1.361	3.826	5.597	nan	3.736	4.537	1.239	4.068	6.013	5.260	6.108	4.937	4.007	3.769	1.505	1.136	3.729	2.031	1.242	5.472
8960	chr2	164256967	164270345	+	0	NA	Intergenic	L1_Mur3|LINE|L1	-7013	NM_173377	329557	Mm.118769	NM_173377	ENSMUSG00000050383	Svs3b	9530004A22Rik	seminal vesicle secretory protein 3B	protein-coding	7.780	2.050	0.665	6.650	4.509	1.998	9.250	12.698	5.366	7.634	6.751	3.433	9.767	9.431	9.247	12.750	7.585	nan	nan	1.552	1.150	2.742	2.173	1.612	14.982
13453	chr7	104574938	104578038	+	0	NA	Intergenic	Lx2|LINE|L1	-3136	NM_147074	57250	Mm.377129	NM_147074	ENSMUSG00000073926	Olfr653	MOR33-1|Ors19	olfactory receptor 653	protein-coding	1.882	3.879	3.677	1.597	2.606	2.570	2.156	3.549	2.094	2.211	7.205	5.087	2.211	2.941	2.507	nan	1.508	2.401	nan	3.694	2.436	3.093	4.827	4.842	1.863
9381	chr3	69293317	69295284	+	0	NA	Intergenic	L1MC1|LINE|L1	-22618	NM_178726	242083	Mm.40577	NM_178726	ENSMUSG00000027784	Ppm1l	3222401G13|5930404J21Rik|AI481720|AW045850|PP2C|PP2Cepsilon|Pp2ce|Ppp2ce|mKIAA4175	protein phosphatase 1 (formerly 2C)-like	protein-coding	3.532	0.686	0.502	0.945	0.878	0.562	2.334	1.032	1.299	1.674	0.678	0.931	4.641	2.035	1.574	nan	3.421	1.319	4.286	2.959	2.014	1.835	3.903	2.688	1.395
3229	chr12	25363768	25369049	+	0	NA	Intergenic	Lx8|LINE|L1	237234	NR_045844	432641	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	3.828	1.298	0.692	2.534	0.978	0.585	3.577	5.009	2.107	3.653	0.449	0.263	5.635	5.754	4.022	5.907	5.509	3.882	1.076	1.615	1.109	1.122	1.446	1.226	2.596
2466	chr11	75321709	75327428	+	0	NA	intron (NM_001164223, intron 6 of 17)	(CA)n|Simple_repeat|Simple_repeat	23815	NM_001164223	68275	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding	5.238	2.803	0.684	7.458	2.820	0.968	nan	6.129	4.553	8.305	2.500	1.636	5.214	7.928	nan	7.484	3.368	7.585	1.250	0.940	nan	2.593	0.720	0.748	9.215
62	chr1	24684777	24686450	+	0	NA	intron (NM_001310483, intron 2 of 15)	intron (NM_001310483, intron 2 of 15)	6695	NM_001310483	68421	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	8.922	12.252	4.189	10.094	4.827	2.243	5.223	6.097	3.868	7.993	4.377	2.121	6.208	6.183	7.865	12.585	5.367	8.016	4.890	2.394	2.191	7.909	3.139	3.004	10.635
8209	chr2	37613308	37614450	+	0	NA	intron (NM_009261, intron 9 of 16)	L1_Mus2|LINE|L1	33406	NM_009261	20744	Mm.237095	NM_009261	ENSMUSG00000026915	Strbp	6430510M02Rik|AI852513|C230082I21Rik|C86322|Spnr	spermatid perinuclear RNA binding protein	protein-coding	3.088	2.373	1.302	2.395	1.064	0.545	1.897	2.014	1.438	nan	0.423	0.661	2.815	3.652	3.254	3.296	2.234	2.495	2.048	0.952	0.788	2.582	0.416	0.305	4.538
6749	chr17	56402921	56408659	+	0	NA	Intergenic	Intergenic	13119	NR_105943	102465590		NR_105943	ENSMUSG00000098339	Mir6977	Gm27922|mmu-mir-6977	microRNA 6977	ncRNA	4.486	7.860	6.260	3.369	6.361	5.258	4.094	2.722	2.704	3.328	1.688	1.578	2.948	4.774	3.620	3.599	3.792	2.534	1.437	2.345	2.895	1.076	1.728	2.229	3.602
13613	chr7	119380427	119385870	+	0	NA	Intergenic	URR1B|DNA|hAT-Charlie	76124	NM_025989	67133	Mm.46403	NM_025989	ENSMUSG00000030954	Gp2	2310037I18Rik|AV060639	glycoprotein 2 (zymogen granule membrane)	protein-coding	4.271	1.042	0.593	5.540	4.722	2.379	3.892	5.541	3.561	4.486	2.070	1.178	4.812	7.645	5.492	5.774	3.741	6.350	1.632	1.284	0.730	1.510	2.056	1.090	7.129
7427	chr18	80909233	80913209	+	0	NA	intron (NM_001201569, intron 3 of 29)	intron (NM_001201569, intron 3 of 29)	22837	NM_001201569	50771	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	2.867	9.206	4.493	5.612	2.780	1.471	2.022	2.120	2.477	6.123	0.869	0.679	3.407	3.638	2.935	5.135	4.559	3.717	1.760	nan	1.394	1.692	0.968	0.851	7.492
4794	chr14	67462759	67468001	+	0	NA	Intergenic	RLTR20A4|LTR|ERVK	-67638	NR_045961	73977	Mm.414915	NR_045961	ENSMUSG00000093472	4930438E09Rik	-	RIKEN cDNA 4930438E09 gene	ncRNA	8.504	2.714	1.310	8.367	6.440	3.883	4.637	4.791	5.228	5.600	2.771	1.709	4.502	7.460	4.915	7.616	3.872	7.175	2.417	nan	2.069	2.874	1.814	1.542	7.382
10657	chr4	133521526	133526894	+	0	NA	intron (NM_001083916, intron 1 of 3)	B4|SINE|B4	5247	NM_133707	69073	Mm.299081	NM_133707	ENSMUSG00000037600	Kdf1	1810019J16Rik	keratinocyte differentiation factor 1	protein-coding	nan	4.386	1.135	3.945	1.027	0.802	1.509	2.280	nan	4.581	2.521	1.130	1.656	2.121	3.078	3.535	1.606	nan	9.180	2.762	2.817	10.809	nan	5.172	5.010
6719	chr17	48547010	48551020	+	0	NA	Intergenic	Intergenic	94114	NM_152823	76589	Mm.311629	NM_152823	ENSMUSG00000043592	Unc5cl	2510009H09Rik|BB155270|Zud	unc-5 family C-terminal like	protein-coding	8.164	15.911	4.178	9.581	3.986	1.852	8.985	7.014	6.246	9.450	7.413	3.911	6.225	8.535	11.274	12.074	6.791	8.775	8.350	4.603	2.442	8.347	6.337	3.885	14.107
14476	chr8	96441242	96443389	+	0	NA	Intergenic	Intergenic	103658	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	1.183	0.877	0.766	0.894	0.597	0.105	1.148	1.367	0.707	0.731	0.636	0.375	1.008	0.711	1.609	1.293	1.001	1.384	4.064	4.826	3.096	8.641	4.809	2.883	1.251
10461	chr4	120186971	120192443	+	0	NA	Intergenic	Intergenic	28501	NM_007902	13615	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	7.419	1.008	0.671	3.464	5.600	2.538	6.785	7.154	5.435	5.408	5.666	4.256	7.510	8.121	6.443	7.985	4.940	6.186	4.691	2.592	1.287	4.630	3.258	2.058	9.404
6505	chr17	29505239	29508620	+	0	NA	Intergenic	Intergenic	15884	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	2.902	1.687	0.461	2.456	1.535	0.728	4.975	3.106	2.021	2.568	1.143	0.906	2.142	4.271	4.424	nan	4.617	2.430	3.679	1.983	1.258	2.799	3.236	2.835	5.359
3697	chr12	106792924	106795567	+	0	NA	Intergenic	Intergenic	-77921	NR_015512	71033	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA	4.208	1.597	0.423	4.218	3.286	1.054	7.419	1.791	nan	4.717	0.881	1.071	3.926	5.908	3.680	1.795	0.985	3.729	1.083	0.864	0.464	2.145	0.893	0.385	5.267
3466	chr12	78001983	78003963	+	0	NA	Intergenic	Intergenic	-223682	NM_172952	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	2.786	1.168	0.926	1.486	4.919	3.862	0.916	1.089	1.670	1.633	0.863	1.080	0.673	3.546	0.614	nan	1.255	3.015	0.619	2.028	0.753	0.391	0.712	0.997	2.169
1999	chr11	19861819	19865006	+	0	NA	Intergenic	Intergenic	-61030	NM_033523	114716	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	4.999	2.390	1.389	4.721	4.088	1.726	5.374	5.763	4.208	4.996	2.877	2.466	6.558	7.241	6.419	7.067	4.572	5.197	2.720	1.688	1.204	3.124	1.827	1.013	5.215
10035	chr4	45023708	45026897	+	0	NA	intron (NM_001285800, intron 6 of 13)	MIR3|SINE|MIR	6693	NM_001285800	64424	Mm.282932	NM_022811	ENSMUSG00000028318	Polr1e	53kDa|AU042259|D030019D19Rik|Paf53|Praf1	polymerase (RNA) I polypeptide E	protein-coding	6.865	12.369	5.288	7.808	3.149	1.511	5.806	5.554	5.319	6.820	5.035	3.761	5.182	6.378	8.105	9.310	4.778	nan	5.910	2.836	1.733	nan	2.552	2.051	11.073
3632	chr12	100589456	100591490	+	0	NA	intron (NM_153587, intron 7 of 17)	MER2|DNA|TcMar-Tigger	-69651	NM_001033213	104718	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	3.128	0.760	0.650	3.777	3.219	1.194	2.363	1.904	2.603	3.576	5.594	3.025	4.686	3.724	2.881	3.131	2.633	5.220	0.820	1.231	0.533	1.554	0.640	0.499	nan
9678	chr3	107218846	107220771	+	0	NA	intron (NM_001111143, intron 1 of 8)	intron (NM_001111143, intron 1 of 8)	1924	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	3.590	0.690	0.202	2.743	2.422	0.951	0.838	0.560	3.387	7.119	0.388	0.509	4.013	6.537	2.448	2.312	1.233	4.824	1.023	0.654	0.425	1.225	0.471	0.049	7.092
6030	chr16	34028365	34031454	+	0	NA	intron (NM_177357, intron 45 of 59)	intron (NM_177357, intron 45 of 59)	-62906	NM_009471	22247	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	5.585	0.897	0.352	2.200	2.222	1.131	7.378	4.611	2.684	3.066	0.450	0.470	6.314	6.304	5.928	8.139	6.978	5.472	1.245	1.360	0.868	1.546	1.452	1.566	7.772
9000	chr2	165930956	165932031	+	0	NA	Intergenic	IAPEz-int|LTR|ERVK	-46655	NM_001252587	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.861	0.752	0.556	1.423	0.869	0.117	1.576	1.195	1.050	1.704	0.473	0.650	2.691	3.104	2.156	4.675	1.642	nan	1.327	0.615	0.654	1.253	1.116	0.254	2.101
6953	chr17	87838588	87840175	+	0	NA	Intergenic	Intergenic	-41387	NM_199251	210741	Mm.312046	NM_199251	ENSMUSG00000050138	Kcnk12	mntk1	potassium channel, subfamily K, member 12	protein-coding	2.743	1.924	0.918	3.945	6.475	5.644	5.237	2.411	3.839	3.399	0.697	1.930	4.001	3.847	4.176	4.857	6.267	3.669	1.266	1.116	2.055	1.068	1.095	1.638	2.477
5969	chr16	29943571	29947971	+	0	NA	Intergenic	Intergenic	33353	NR_037689	328657	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	11.319	2.375	1.176	7.696	6.353	4.578	9.725	13.166	6.748	10.128	7.761	4.867	10.435	12.739	10.055	13.577	9.168	10.529	2.369	1.958	1.939	3.853	nan	2.755	13.561
7968	chr2	11698070	11700752	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	-5882	NM_001271498	16169	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	nan	10.222	2.366	9.743	2.860	1.201	7.420	9.649	5.115	8.480	4.929	2.487	7.635	7.257	8.952	12.422	6.856	8.829	3.678	1.560	2.580	5.587	1.449	2.733	17.993
6082	chr16	44739006	44740167	+	0	NA	intron (NM_001159329, intron 5 of 5)	B1_Mus2|SINE|Alu	6777	NM_001159329	66067	Mm.34520	NM_025332	ENSMUSG00000022668	Gtpbp8	0610037H22Rik	GTP-binding protein 8 (putative)	protein-coding	3.537	0.599	0.497	0.755	1.150	0.636	3.958	6.425	1.373	0.903	0.655	0.443	3.738	3.749	3.420	2.823	3.835	2.419	0.753	0.416	1.161	0.425	0.450	0.821	2.719
15776	chrX	96486550	96489665	+	0	NA	intron (NM_181273, intron 10 of 15)	Lx8b|LINE|L1	31761	NM_001159627	15203	Mm.277092	NM_010417	ENSMUSG00000031209	Heph	C130006F04Rik|Cpl|mKIAA0698|sla	hephaestin	protein-coding	1.959	1.051	0.549	3.339	1.159	0.476	0.685	0.979	1.223	1.566	0.523	0.358	0.865	2.742	1.766	1.808	0.900	2.401	0.598	0.566	0.315	0.699	0.492	0.154	1.977
7907	chr19	58691082	58692094	+	0	NA	Intergenic	Intergenic	-7329	NR_038140	69166	Mm.491059	NR_038140	ENSMUSG00000101088	1810018F18Rik	1810031L05Rik|1810047O18Rik	RIKEN cDNA 1810018F18 gene	ncRNA	3.460	nan	0.339	2.135	2.748	1.029	4.044	2.454	2.394	2.998	0.963	3.331	3.370	2.801	2.757	3.639	4.908	4.347	1.063	1.551	0.744	1.262	1.473	0.941	3.022
6812	chr17	67662564	67667690	+	0	NA	Intergenic	MT2B2|LTR|ERVL	-32138	NM_008480	16772	Mm.303386	NM_008480	ENSMUSG00000032796	Lama1	AA408497|Lama	laminin, alpha 1	protein-coding	4.682	0.365	0.294	2.893	4.053	2.426	8.287	3.687	nan	4.394	0.771	0.605	5.911	6.101	5.079	6.072	6.434	4.417	0.589	1.129	0.987	0.623	0.818	0.578	5.309
5808	chr16	13280375	13283263	+	0	NA	intron (NM_181860, intron 1 of 3)	L1_Mus4|LINE|L1	16740	NM_181860	239719	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	ENSMUSG00000075401|Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	2.735	0.439	0.519	1.412	4.483	4.866	2.089	2.201	3.297	2.340	1.806	1.597	2.440	2.358	0.882	nan	3.533	2.753	1.038	1.782	1.530	0.250	2.345	3.502	0.959
2046	chr11	29552826	29554832	+	0	NA	intron (NM_001163521, intron 2 of 11)	intron (NM_001163521, intron 2 of 11)	-5789	NM_001033865	78294	Mm.180003	NM_024277	ENSMUSG00000020460	Rps27a	0610006J14Rik|Uba52|Ubb|Ubc	ribosomal protein S27A	protein-coding	0.998	0.740	0.468	nan	0.497	0.612	1.091	0.718	1.066	0.628	6.590	2.203	0.163	0.260	0.429	0.664	nan	0.813	0.893	0.713	0.790	0.238	0.854	0.770	0.663
8682	chr2	131883110	131888175	+	0	NA	Intergenic	Intergenic	-24286	NM_011170	19122	Mm.648	NM_011170	ENSMUSG00000079037	Prnp	AA960666|AI325101|CD230|PrP|PrP<C>|PrPC|PrPSc|Prn-i|Prn-p|Sinc|prP27-30|prP33-35C	prion protein	protein-coding	1.467	7.622	4.699	1.641	1.165	1.093	0.616	0.970	2.294	1.842	0.672	0.661	1.182	1.432	1.250	nan	1.646	2.071	nan	1.483	1.500	2.650	0.952	1.100	1.776
13851	chr7	144683840	144686966	+	0	NA	intron (NM_178642, intron 1 of 25)	intron (NM_178642, intron 1 of 25)	53189	NM_178642	101772	Mm.26700	NM_178642	ENSMUSG00000031075	Ano1	Tmem16a	anoctamin 1, calcium activated chloride channel	protein-coding	nan	nan	0.455	nan	0.337	0.079	0.630	2.698	nan	0.783	0.380	1.208	0.992	0.692	0.950	1.160	0.419	1.052	2.134	1.225	0.706	3.754	nan	1.367	nan
7985	chr2	17966584	17973081	+	0	NA	Intergenic	RMER17C-int|LTR|ERVK	27126	NM_026627	68231	Mm.23887	NM_026627	ENSMUSG00000062651	H2afb1	1700113O17Rik|H2A.Bbd|H2al2|TSEG-1|Tseg1	H2A histone family, member B1	protein-coding	3.414	4.504	2.436	4.983	2.005	1.288	8.781	7.516	4.683	6.954	5.488	3.903	6.282	9.141	6.639	8.303	8.996	7.108	3.438	3.309	2.606	4.917	3.160	3.016	3.366
13507	chr7	108138988	108142677	+	0	NA	Intergenic	Intergenic	-15571	NM_146499	258492	Mm.271411	NM_146499	ENSMUSG00000110171	Olfr484	MOR204-16	olfactory receptor 484	protein-coding	6.171	1.738	1.253	5.468	4.548	3.086	2.646	4.150	3.351	3.958	3.801	2.593	2.250	4.033	2.961	3.370	2.860	3.999	nan	1.189	2.011	0.854	0.630	0.251	3.484
10697	chr4	134872089	134875397	+	0	NA	intron (NM_011270, intron 1 of 9)	intron (NM_011270, intron 1 of 9)	9207	NM_011270	19746	Mm.195461	NM_011270	ENSMUSG00000028825	Rhd	Rh|Rhced|Rhl1	Rh blood group, D antigen	protein-coding	nan	1.040	0.846	1.723	2.133	2.640	1.290	1.461	nan	1.109	0.739	0.753	0.740	1.241	1.235	1.243	1.148	nan	1.130	1.148	1.700	1.587	nan	1.553	0.998
6302	chr17	5419543	5421441	+	0	NA	intron (NM_027457, intron 3 of 3)	intron (NM_027457, intron 3 of 3)	-1725	NM_175349	106557	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	5.918	0.777	0.609	2.624	1.288	0.325	3.905	2.650	3.916	4.412	0.449	1.095	5.270	5.180	3.997	4.568	3.826	4.164	1.278	0.479	0.145	0.818	0.420	0.339	6.459
11253	chr5	64203290	64204757	+	0	NA	intron (NM_001310611, intron 2 of 21)	MER58A|DNA|hAT-Charlie	-26334	NM_001289514	57915	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	6.228	0.822	0.238	4.100	1.403	1.190	6.618	6.028	4.632	6.774	3.973	3.048	6.478	6.824	8.905	8.604	5.190	7.028	6.382	2.217	0.861	nan	4.363	2.518	11.528
8858	chr2	155416155	155419007	+	0	NA	intron (NM_001242558, intron 7 of 12)	intron (NM_001242558, intron 7 of 12)	23202	NM_001242558	56406	Mm.27592	NM_019825	ENSMUSG00000038369	Ncoa6	AIB3|ASC-2|ASC2|NRC|Ncoa7|PRIP|RAP250|mKIAA0181	nuclear receptor coactivator 6	protein-coding	7.150	4.759	2.283	5.106	3.813	2.472	5.702	11.903	4.492	6.051	5.533	2.969	9.473	12.180	7.059	10.446	8.916	6.756	nan	3.157	1.836	3.551	2.750	1.975	9.168
10203	chr4	81571040	81575365	+	0	NA	Intergenic	Intergenic	-86189	NR_030570	100124446		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA	1.388	1.772	0.983	0.957	0.614	0.289	2.403	1.854	2.207	1.501	8.049	3.953	1.676	2.048	2.029	1.562	0.909	1.929	nan	2.102	0.955	4.056	0.469	0.420	1.024
6604	chr17	35971451	35978203	+	0	NA	intron (NM_145487, intron 2 of 3)	intron (NM_145487, intron 2 of 3)	4196	NM_001282012	75210	Mm.40036	NM_145487	ENSMUSG00000038500	Prr3	4930540G07Rik|Cat56	proline-rich polypeptide 3	protein-coding	4.889	7.017	3.814	4.377	2.863	2.414	6.029	4.461	3.086	3.575	4.349	2.909	4.584	5.715	5.680	6.611	5.497	4.500	5.870	3.860	3.731	6.285	4.795	4.848	6.609
1934	chr11	5685061	5690275	+	0	NA	intron (NM_023816, intron 26 of 26)	intron (NM_023816, intron 26 of 26)	20031	NM_026080	64660	Mm.7328	NM_026080	ENSMUSG00000020477	Mrps24	3110030K20Rik|AI414579|Rpms24	mitochondrial ribosomal protein S24	protein-coding	9.660	9.470	3.840	8.634	4.884	3.224	7.301	9.069	6.552	8.058	5.446	3.274	7.366	8.986	8.107	9.990	7.151	9.250	3.211	nan	2.103	4.258	2.161	2.222	9.755
1916	chr11	4539164	4545312	+	0	NA	intron (NM_028860, intron 1 of 17)	intron (NM_028860, intron 1 of 17)	52577	NM_028860	74302	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	4.425	1.065	0.506	4.188	4.728	2.756	2.769	2.858	3.972	5.331	1.668	1.049	4.607	5.736	4.590	5.775	5.063	5.669	0.872	nan	0.459	0.653	0.958	0.784	4.070
4232	chr13	67181554	67182907	+	0	NA	exon (NM_001013769, exon 4 of 4)	exon (NM_001013769, exon 4 of 4)	9048	NM_001013769	380855	Mm.284988	NM_001013769	ENSMUSG00000058900	Rsl1	rslcan-9	regulator of sex limited protein 1	protein-coding	6.711	5.185	1.832	7.389	3.600	1.244	4.881	6.116	5.007	6.564	3.187	3.051	5.790	7.906	8.309	7.946	3.792	6.851	2.722	1.557	1.372	2.106	2.816	1.537	8.653
9517	chr3	94755959	94759142	+	0	NA	Intergenic	Intergenic	28965	NM_001293727	70737	Mm.87634	NM_001037711	ENSMUSG00000068876	Cgn	6330408J11Rik	cingulin	protein-coding	7.120	12.719	5.801	6.646	5.129	2.073	7.032	5.225	5.005	5.849	4.734	2.742	7.352	8.814	7.595	9.258	6.739	7.245	5.503	3.223	1.954	5.232	3.817	2.641	10.548
14983	chr9	41935887	41940023	+	0	NA	Intergenic	Intergenic	186334	NM_011436	20660	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	1.511	7.366	4.297	1.188	0.674	0.153	0.726	1.113	0.975	1.088	1.616	0.840	0.653	0.971	1.170	1.080	nan	1.044	nan	1.110	0.571	1.289	0.459	0.270	0.970
1722	chr10	111031728	111033385	+	0	NA	Intergenic	L1ME4b|LINE|L1	-22490	NM_172554	320150	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|Hip14	zinc finger, DHHC domain containing 17	protein-coding	2.664	0.667	0.449	1.269	0.815	0.771	4.556	4.651	2.236	1.430	1.660	1.991	2.361	3.847	3.606	2.295	1.370	2.888	0.492	0.505	0.676	0.568	0.691	0.501	2.103
12686	chr6	122773181	122777532	+	0	NA	Intergenic	Intergenic	-32611	NM_011401	20527	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	4.137	3.069	2.159	3.847	5.457	3.670	7.353	7.479	3.196	3.871	3.093	2.061	4.963	8.760	6.001	8.583	5.855	4.882	2.646	2.446	1.982	2.246	nan	2.556	6.580
4568	chr14	30780890	30783625	+	0	NA	intron (NM_001166531, intron 6 of 21)	MERVL-int|LTR|ERVL	-43337	NM_028839	69179	Mm.143025	NM_028839	ENSMUSG00000006526	Tmem110	1810038N08Rik|2310014H19Rik|AW554125|STIMATE	transmembrane protein 110	protein-coding	6.938	9.158	4.366	6.363	2.253	2.278	3.989	8.733	4.379	5.453	3.961	1.659	4.568	6.642	7.245	7.541	3.623	nan	4.043	2.606	2.409	nan	2.713	2.194	8.735
950	chr1	182696914	182699023	+	0	NA	Intergenic	Intergenic	51212	NM_001033547	433386	Mm.338103	NM_001033547	ENSMUSG00000043429	Ccdc185	4922505E12Rik	coiled-coil domain containing 185	protein-coding	11.020	11.712	3.358	7.915	3.899	1.758	7.767	7.467	5.514	7.979	4.682	3.199	9.638	9.132	8.952	13.379	9.723	8.998	3.943	3.849	3.587	5.314	3.293	2.173	14.588
9508	chr3	94280105	94288619	+	0	NA	Intergenic	L1Md_T|LINE|L1	-25770	NM_029431	75778	Mm.45092	NM_029431	ENSMUSG00000028145	Them4	2700077M13Rik|4921507I02Rik	thioesterase superfamily member 4	protein-coding	0.984	0.623	0.461	0.627	0.904	0.533	0.944	1.111	0.777	0.939	nan	1.432	0.642	0.936	0.900	nan	0.544	1.397	6.458	4.443	2.802	7.333	6.853	4.698	1.423
1445	chr10	75723016	75725394	+	0	NA	intron (NM_172549, intron 22 of 36)	intron (NM_172549, intron 22 of 36)	40152	NM_172549	104248	Mm.257404	NM_172549	ENSMUSG00000020196	Cabin1	A330070M20Rik|Cain|Ppp3in	calcineurin binding protein 1	protein-coding	7.397	0.790	0.499	5.146	2.452	1.133	4.534	5.677	5.846	5.680	1.362	2.042	5.731	6.630	6.678	7.668	5.331	7.927	nan	0.476	0.616	1.721	0.512	0.401	8.854
14521	chr8	107826453	107830767	+	0	NA	Intergenic	Intergenic	-240128	NM_010817	17463	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	6.296	2.038	1.080	3.501	4.314	2.722	5.093	7.929	2.778	4.081	3.022	1.652	4.507	6.796	5.559	7.541	5.454	5.896	1.871	1.634	1.745	nan	1.920	1.295	8.086
11574	chr5	113535739	113540001	+	0	NA	Intergenic	Intergenic	-12550	NM_177292	320916	Mm.102783	NM_177292	ENSMUSG00000063430	Wscd2	4933413A10Rik|C530024P05Rik|Gm450	WSC domain containing 2	protein-coding	4.355	1.121	0.303	4.045	6.027	3.508	5.053	2.486	3.620	4.714	3.338	1.630	3.107	7.266	4.735	4.917	2.304	5.379	nan	nan	1.110	1.237	nan	1.165	5.260
8481	chr2	102250089	102251680	+	0	NA	Intergenic	Intergenic	-64424	NM_001290784	241576	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	3.429	0.625	0.391	1.515	2.886	2.919	4.877	6.457	2.788	2.430	2.454	1.258	5.006	4.640	5.310	4.601	4.625	2.856	0.473	0.889	0.793	0.352	0.604	0.570	2.601
3429	chr12	74890601	74897011	+	0	NA	Intergenic	Intergenic	283526	NM_172805	238271	Mm.44465	NM_172805	ENSMUSG00000034402	Kcnh5	Eag2	potassium voltage-gated channel, subfamily H (eag-related), member 5	protein-coding	7.599	3.439	1.492	2.834	3.032	1.818	5.603	5.817	2.868	3.998	3.874	2.048	3.997	nan	6.124	nan	4.382	4.576	2.886	1.635	1.036	3.205	2.500	1.909	8.955
3580	chr12	86938949	86941559	+	0	NA	Intergenic	B1_Mur3|SINE|Alu	-6787	NM_001289431	217732	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	8.990	16.744	4.289	13.574	2.398	1.999	5.545	6.805	3.818	12.192	6.380	1.973	8.082	7.141	8.149	11.592	5.118	9.423	2.578	0.853	1.674	2.693	1.339	2.013	15.956
3073	chr11	119075742	119078201	+	0	NA	TTS (NM_007625)	TTS (NM_007625)	9266	NM_007625	12418	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	3.789	nan	0.473	3.529	1.697	0.589	3.553	5.311	2.944	4.097	1.556	2.403	2.403	5.095	4.358	5.358	2.100	nan	7.403	3.513	1.975	8.753	6.421	4.160	6.172
1992	chr11	17069543	17072556	+	0	NA	intron (NM_029861, intron 2 of 2)	intron (NM_029861, intron 2 of 2)	19115	NM_029861	380686	Mm.425666	NM_029861	ENSMUSG00000044629	Cnrip1	1500041B16Rik|3110054C06Rik|5330437A18Rik|AI854501|C2orf32	cannabinoid receptor interacting protein 1	protein-coding	4.721	nan	0.651	5.472	4.369	2.151	2.537	4.518	5.394	6.285	5.690	1.557	4.763	6.763	4.290	3.711	3.107	6.363	1.513	1.512	0.582	1.384	0.846	0.593	1.920
14119	chr8	34715600	34719214	+	0	NA	Intergenic	ID_B1|SINE|B4	-77091	NR_040706	330734	Mm.149998	NR_040706	ENSMUSG00000109819	B930018H19Rik	B930018H19	RIKEN cDNA B930018H19 gene	ncRNA	7.658	4.248	2.209	4.454	6.766	4.626	5.125	10.847	5.417	4.856	5.685	5.131	7.510	8.489	7.654	8.443	7.493	5.882	2.435	3.133	3.295	3.774	2.383	2.082	5.852
6912	chr17	84524103	84526105	+	0	NA	intron (NM_177606, intron 2 of 29)	B4A|SINE|B4	13209	NM_177606	213556	Mm.215159	NM_177606	ENSMUSG00000040852	Plekhh2	AI256725|E030001K05|mKIAA2028	pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	protein-coding	7.414	3.570	2.898	5.083	4.599	3.149	2.203	2.652	3.031	4.396	5.739	1.639	1.633	4.148	1.979	3.022	3.133	3.233	1.642	2.776	2.673	1.314	2.787	2.316	4.417
1466	chr10	77813447	77817567	+	0	NA	TTS (NM_001205009)	TTS (NM_001205009)	825	NM_001205009	100040299	Mm.486155	NM_001205009		Gm2696	-	predicted gene 2696	protein-coding	6.151	5.363	1.472	nan	3.397	2.531	3.144	5.629	2.768	7.474	2.606	1.594	3.933	6.718	6.768	4.933	3.677	6.152	3.157	1.942	2.060	4.491	2.683	2.842	8.592
10466	chr4	120471709	120474449	+	0	NA	intron (NM_001159630, intron 7 of 17)	L1MC4|LINE|L1	-59152	NM_177570	194219	Mm.29788	NM_177570	ENSMUSG00000047518	Slfnl1	4933406A14Rik	schlafen like 1	protein-coding	5.016	2.960	1.931	3.882	2.879	2.049	2.783	3.744	2.828	3.142	3.751	1.378	2.842	3.668	2.297	2.723	2.095	4.120	1.424	1.262	1.040	1.289	1.043	0.732	2.324
14827	chr8	129468654	129471469	+	0	NA	Intergenic	Intergenic	206431	NR_144501	102635552		NM_001346808		Gm32856	-	predicted gene, 32856	protein-coding	6.829	6.711	2.107	nan	2.727	1.655	nan	7.220	3.586	5.210	3.567	2.074	6.168	7.087	6.495	9.084	5.845	5.894	nan	1.758	2.207	nan	1.881	nan	9.734
9824	chr3	135394801	135397142	+	0	NA	intron (NM_028946, intron 12 of 12)	intron (NM_028946, intron 12 of 12)	27462	NM_025902	67006	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	6.016	nan	0.422	2.764	5.189	2.381	6.740	2.849	2.806	3.916	3.079	0.933	6.407	6.745	5.575	6.020	5.037	5.702	0.804	0.903	0.628	0.591	0.888	0.387	4.865
4248	chr13	74438878	74439982	+	0	NA	Intergenic	Lx4B|LINE|L1	32365	NR_109835	735288		NR_109835	ENSMUSG00000094403	Mir692-2	Mir692-2a|Mir692-3|Mirn692-2|Mirn692-2a|mir-692-2|mmu-mir-692-2	microRNA 692-2	ncRNA	2.354	0.769	0.234	2.157	3.435	1.800	2.468	4.230	2.489	2.659	5.839	2.403	2.292	4.834	2.245	3.844	0.839	2.971	0.796	0.325	0.222	0.651	0.159	0.519	3.194
11689	chr5	123349451	123350776	+	0	NA	intron (NM_029850, intron 1 of 5)	B2_Mm1t|SINE|B2	5665	NM_029850	77045	Mm.151960	NM_029850	ENSMUSG00000029438	Bcl7a	4432415N06Rik|AI448316	B cell CLL/lymphoma 7A	protein-coding	4.081	9.645	1.323	7.512	1.201	0.947	4.071	4.454	2.281	11.875	3.423	3.053	3.188	3.640	8.362	7.880	2.828	7.895	nan	0.339	2.158	6.612	nan	3.746	12.527
4534	chr14	25282503	25284700	+	0	NA	Intergenic	L1MD2|LINE|L1	-140360	NR_045718	75862	Mm.109191	NR_045718		4930572O13Rik	-	RIKEN cDNA 4930572O13 gene	ncRNA	3.521	1.224	0.770	1.502	1.783	0.892	5.401	1.969	3.738	4.589	0.694	0.467	3.400	7.213	4.049	5.612	2.254	3.713	0.502	0.672	0.181	nan	0.672	0.311	7.812
778	chr1	158582554	158586329	+	0	NA	intron (NM_007495, intron 11 of 22)	L1Md_T|LINE|L1	78816	NR_030441	735253		NR_030441	ENSMUSG00000070103	Mir488	Mirn488|mir-488|mmu-mir-488	microRNA 488	ncRNA	3.345	1.582	0.756	2.757	2.007	1.194	2.442	2.479	nan	3.167	1.608	1.100	3.019	4.469	2.463	3.907	2.701	3.485	nan	0.595	0.308	0.826	nan	0.602	3.516
15311	chr9	75281825	75284560	+	0	NA	intron (NM_001081322, intron 25 of 40)	intron (NM_001081322, intron 25 of 40)	-23096	NM_010313	14697	Mm.17604	NM_010313	ENSMUSG00000032192	Gnb5	GBS|Gbeta5|flr	guanine nucleotide binding protein (G protein), beta 5	protein-coding	7.950	4.514	2.648	5.006	7.212	5.699	3.818	6.984	5.406	5.337	6.432	3.382	3.995	5.897	5.899	6.419	5.331	6.701	6.649	nan	5.277	5.402	7.854	8.065	5.938
10383	chr4	111570715	111574178	+	0	NA	intron (NM_001048189, intron 9 of 12)	IAPEz-int|LTR|ERVK	-147564	NM_026470	67946	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	0.544	0.494	0.373	0.429	0.127	0.040	0.149	nan	1.020	0.647	6.164	1.085	0.391	0.479	0.850	0.675	0.363	nan	0.892	0.570	0.142	0.896	0.641	0.358	0.351
13921	chr7	150517817	150519759	+	0	NA	Intergenic	Intergenic	5203953	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	2.430	nan	0.068	2.443	0.898	0.318	3.201	3.141	nan	2.303	0.544	0.701	3.997	4.512	3.908	3.956	2.991	4.115	1.164	0.356	0.267	1.392	nan	0.441	4.556
10096	chr4	54981901	54987002	+	0	NA	intron (NM_172867, intron 1 of 12)	intron (NM_172867, intron 1 of 12)	36506	NM_172867	242466	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	3.383	nan	0.274	2.362	1.816	0.821	3.769	4.705	1.957	2.391	1.407	0.299	5.071	7.035	4.233	6.404	1.553	4.804	nan	0.374	0.228	1.161	0.763	0.383	3.296
5166	chr15	53097676	53099093	+	0	NA	intron (NM_010162, intron 4 of 10)	intron (NM_010162, intron 4 of 10)	247799	NM_010162	14042	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	4.819	4.427	1.990	2.598	1.892	1.363	9.226	6.576	3.206	2.705	2.843	1.425	6.551	4.060	3.880	4.995	3.744	4.215	0.977	1.962	1.069	1.016	1.202	0.881	4.667
11541	chr5	108465050	108469287	+	0	NA	intron (NM_172716, intron 1 of 10)	intron (NM_172716, intron 1 of 10)	5836	NM_172716	69587	Mm.261218	NM_172716	ENSMUSG00000033623	Pcgf3	2310035N15Rik|AI662857|D630042K08Rik|DONG1|E430039C14|RNF3A|Rnf3	polycomb group ring finger 3	protein-coding	0.534	8.462	9.125	0.410	0.584	0.609	nan	0.345	0.480	0.440	0.354	0.423	0.275	0.376	0.351	0.593	0.709	0.471	nan	0.575	0.707	0.405	0.639	0.893	0.347
11470	chr5	98446115	98447830	+	0	NA	intron (NM_001024614, intron 2 of 5)	L1MC|LINE|L1	28692	NR_030484	735265		NR_030484	ENSMUSG00000105814	Mir703	Mirn703|mir-703|mmu-mir-703	microRNA 703	ncRNA	2.029	7.098	5.261	1.755	0.906	0.311	0.855	0.741	1.187	1.099	1.669	1.021	0.523	0.952	1.444	1.323	1.205	1.065	0.672	1.260	0.797	0.419	0.574	0.306	0.624
10297	chr4	98588879	98591994	+	0	NA	intron (NM_001005787, intron 2 of 15)	intron (NM_001005787, intron 2 of 15)	43802	NM_001005787	12695	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	6.617	13.624	5.105	9.809	2.740	1.676	5.247	5.732	4.849	11.043	6.208	3.614	5.078	7.121	7.396	8.289	4.058	7.947	7.991	8.191	7.095	9.880	4.268	5.519	13.185
5072	chr15	25680685	25686722	+	0	NA	intron (NM_019472, intron 2 of 40)	intron (NM_019472, intron 2 of 40)	61153	NM_019472	17909	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	1.179	0.646	0.522	1.008	0.722	0.443	1.451	1.587	0.774	0.943	0.832	0.673	1.343	1.325	1.451	1.485	1.857	1.510	5.383	4.629	3.185	6.631	2.129	1.840	1.235
15655	chrX	7225116	7227537	+	0	NA	intron (NM_001243762, intron 2 of 13)	Lx8|LINE|L1	11448	NR_030495	723974		NR_030495	ENSMUSG00000070108	Mir500	Mirn500|mir-500|mmu-mir-500	microRNA 500	ncRNA	4.513	6.452	3.792	5.264	4.942	4.140	3.889	4.849	2.916	5.170	2.757	2.041	3.528	4.970	4.251	5.337	3.995	4.485	2.570	2.527	3.353	2.548	2.350	3.411	5.685
6297	chr17	5124263	5127678	+	0	NA	intron (NM_001085355, intron 3 of 19)	intron (NM_001085355, intron 3 of 19)	130896	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	4.719	1.539	1.762	3.847	5.532	1.879	7.146	5.034	4.258	4.679	3.484	2.280	5.190	7.514	5.743	8.119	6.187	6.497	nan	1.294	0.997	2.947	0.864	0.419	7.171
4168	chr13	56054749	56058625	+	0	NA	Intergenic	Intergenic	78863	NM_012015	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	nan	0.430	0.204	2.386	1.038	0.495	0.878	1.142	1.671	2.393	2.369	0.209	2.363	nan	2.563	nan	1.709	nan	0.659	0.496	0.201	0.697	0.345	0.224	nan
7664	chr19	24627343	24631993	+	0	NA	Intergenic	Intergenic	-44340	NM_183160	226040	Mm.391170	NM_183160	ENSMUSG00000048572	Tmem252	E030010A14Rik	transmembrane protein 252	protein-coding	5.696	1.142	0.343	5.500	3.256	2.184	7.074	9.225	5.465	9.738	nan	1.028	6.709	8.187	9.418	10.581	8.438	7.413	nan	1.901	2.225	5.562	3.722	3.920	12.452
3744	chr12	112908535	112910370	+	0	NA	intron (NM_010588, intron 25 of 25)	intron (NM_010588, intron 25 of 25)	11089	NR_105906	102465567		NR_105906	ENSMUSG00000098338	Mir6941	Gm27923|mmu-mir-6941	microRNA 6941	ncRNA	2.977	2.199	0.569	4.142	0.623	0.297	3.834	2.516	nan	3.064	0.903	0.886	5.079	4.623	4.771	2.813	1.011	3.475	1.171	0.467	0.558	2.671	0.564	1.342	4.664
3220	chr12	21307464	21308672	+	0	NA	exon (NM_018813, exon 13 of 18)	exon (NM_018813, exon 13 of 18)	-8324	NM_026347	67732	Mm.335830	NM_026347	ENSMUSG00000062054	Iah1	1500019E20Rik|4833421E05Rik	isoamyl acetate-hydrolyzing esterase 1 homolog	protein-coding	2.360	0.928	0.621	1.867	0.340	0.204	3.771	3.821	3.805	3.066	1.021	1.225	6.273	4.810	3.479	7.577	3.732	5.011	0.976	0.736	0.101	3.523	0.544	0.186	4.139
15158	chr9	61013618	61015743	+	0	NA	Intergenic	Intergenic	-2389	NR_040767	330956	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	3.522	2.273	1.704	3.102	0.942	0.119	3.469	4.220	1.741	2.541	1.057	0.402	2.757	4.421	2.276	2.709	2.266	1.777	0.984	0.823	0.539	0.506	0.509	0.494	5.725
12438	chr6	90309552	90310924	+	0	NA	intron (NM_027928, intron 2 of 2)	intron (NM_027928, intron 2 of 2)	8968	NM_177738	243535	Mm.233854	NM_177738	ENSMUSG00000049694	BC048671	-	cDNA sequence BC048671	protein-coding	4.773	1.071	0.338	nan	1.388	0.535	6.627	8.234	1.593	2.844	9.180	2.348	4.309	6.901	5.692	4.831	3.488	nan	nan	0.685	0.357	0.924	1.142	0.339	6.095
6411	chr17	25584867	25587818	+	0	NA	intron (NM_029624, intron 2 of 10)	intron (NM_029624, intron 2 of 10)	7168	NR_045520	76483	Mm.12787	NM_029624	ENSMUSG00000002279	Lmf1	2400010G15Rik|AW822050|Tmem112|cld	lipase maturation factor 1	protein-coding	0.576	3.374	1.381	0.579	0.179	0.043	3.376	4.430	1.533	1.394	0.234	0.255	1.776	1.747	2.772	2.094	0.915	1.013	5.731	3.273	2.172	6.129	6.318	4.171	0.954
12629	chr6	116056760	116058306	+	0	NA	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-62528	NM_026376	67784	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	6.363	2.446	0.769	6.315	2.477	1.427	6.057	6.943	3.143	5.258	1.756	1.916	4.088	5.811	7.652	9.566	4.267	8.695	4.226	1.597	1.421	4.352	2.312	1.742	9.517
7586	chr19	11985965	11987601	+	0	NA	intron (NM_001033174, intron 9 of 13)	L1MB3|LINE|L1	20939	NM_001033174	76303	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	12.956	15.691	5.408	14.680	9.577	7.312	12.635	13.670	nan	16.857	7.474	4.042	9.666	14.476	12.471	13.605	13.391	11.948	3.559	1.953	5.051	6.442	3.747	6.153	22.658
3854	chr13	15186045	15187586	+	0	NA	Intergenic	Lx9|LINE|L1	-276908	NM_008130	14634	Mm.5098	NM_008130	ENSMUSG00000021318	Gli3	AI854843|AU023367|Bph|GLI3-190|GLI3FL|Pdn|Xt|add	GLI-Kruppel family member GLI3	protein-coding	4.604	0.499		1.191	2.720	1.083	4.589	0.863	2.876	3.038	0.348	0.760	4.816	3.096	2.810	4.244	2.516	3.197	0.502	1.224	0.630	0.508	0.707	0.374	3.433
13696	chr7	126037670	126042183	+	0	NA	intron (NM_001101488, intron 1 of 6)	intron (NM_001101488, intron 1 of 6)	42485	NM_001101488	269994	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	1.245	0.783	0.663	0.673	0.632	0.625	2.096	nan	1.381	0.777	7.718	3.644	0.525	0.560	nan	0.895	1.155	0.795	0.856	0.602	0.521	0.535	0.677	0.451	0.596
12758	chr6	133984099	133987745	+	0	NA	Intergenic	B3A|SINE|B2	-49778	NM_001303102	14011	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	10.883	9.800	3.851	11.495	5.303	3.070	9.847	11.615	6.363	11.267	10.070	5.929	8.656	10.161	10.276	11.605	10.524	9.455	6.798	4.794	4.203	7.510	5.160	5.933	14.027
14234	chr8	55695198	55697231	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	210750	NM_175939	244486	Mm.67684	NM_175939	ENSMUSG00000046258	Adam29	-	a disintegrin and metallopeptidase domain 29	protein-coding	2.068	0.654	0.604	2.819	3.748	1.219	2.504	1.241	1.538	2.181	1.568	0.864	1.807	5.102	3.326	1.226	1.152	2.599	2.436	2.061	1.121	4.033	1.916	0.971	1.125
7744	chr19	37452880	37457038	+	0	NA	Intergenic	Intergenic	-10295	NR_131008	78640	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	nan	3.406	3.424	0.872	1.889	1.206	3.300	2.267	1.283	1.027	0.837	0.804	1.963	1.336	1.422	1.558	nan	1.891	2.117	3.820	2.358	2.051	6.118	6.431	1.555
8906	chr2	158334548	158345618	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	21426	NR_015463	68108	Mm.119198	NR_015463		Snhg17	9430008C03Rik	small nucleolar RNA host gene 17	ncRNA	nan	0.729	0.527	1.663	3.279	2.393	4.421	5.562	nan	nan	2.518	2.391	nan	4.773	3.017	5.071	3.100	nan	nan	1.985	2.329	1.711	2.394	2.176	nan
9143	chr3	10021508	10023685	+	0	NA	Intergenic	Intergenic	10011	NM_001272098	16592	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	8.088	1.403	1.814	2.156	6.714	4.665	8.651	9.281	2.713	3.006	1.560	2.452	3.144	6.473	5.196	6.828	11.150	4.661	1.225	2.121	1.656	0.853	1.615	1.444	4.698
1607	chr10	93143725	93146171	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-15928	NM_146239	237459	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	0.887	0.570	0.545	1.412	0.544	0.101	0.290	0.239	0.629	0.802	nan	0.220	0.100	0.512	0.315	0.799	0.368	1.245	4.615	3.293	2.428	4.557	5.001	3.294	0.748
12318	chr6	72279755	72283865	+	0	NA	Intergenic	Intergenic	-22800	NM_001282071	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	2.666	0.566	0.786	1.492	5.478	4.533	4.422	2.774	1.842	1.945	1.784	1.250	2.422	5.009	1.951	2.791	3.079	2.526	0.669	0.619	0.789	0.374	0.821	1.075	2.142
10369	chr4	108585179	108591669	+	0	NA	intron (NM_011015, intron 1 of 16)	B1_Mm|SINE|Alu	8970	NM_011015	18392	Mm.294154	NM_011015	ENSMUSG00000028587	Orc1	AA545195|MmORC1|Orc1l	origin recognition complex, subunit 1	protein-coding	0.858	1.003	0.639	0.598	0.387	0.346	2.254	nan	1.173	0.782	0.540	1.716	1.236	1.736	2.163	1.307	0.897	nan	7.324	4.407	3.676	6.835	5.895	5.155	0.781
11003	chr4	155608223	155610545	+	0	NA	non-coding (NR_040441, exon 3 of 3)	non-coding (NR_040441, exon 3 of 3)	7968	NM_177186	320541	Mm.306018	NM_177186	ENSMUSG00000042202	Slc35e2	A530082C11Rik|AI957035	solute carrier family 35, member E2	protein-coding	4.422	7.362	2.800	5.778	1.610	1.004	4.538	3.709	3.743	7.250	6.459	3.545	3.710	5.216	5.927	7.256	3.301	6.051	5.389	0.899	1.893	4.620	1.336	2.748	10.886
8036	chr2	26425231	26447835	+	0	NA	intron (NM_153125, intron 2 of 29)	B1F|SINE|Alu	8683	NM_153125	227648	Mm.206371	NM_153125	ENSMUSG00000026924	Sec16a	AU024582|C230052J16Rik	SEC16 homolog A, endoplasmic reticulum export factor	protein-coding	4.094	1.489	0.398	7.127	1.636	0.824	2.234	2.342	nan	3.703	1.229	0.718	2.196	3.274	2.913	4.401	1.959	4.780	0.864	0.867	0.857	1.819	0.499	0.450	5.773
15832	chrX	138948795	138953818	+	0	NA	intron (NM_013724, intron 2 of 27)	L1Md_F2|LINE|L1	36876	NM_013724	27206	Mm.482319	NM_013724	ENSMUSG00000052854	Nrk	AA407323|AA409510|AI225895|AV168563|AW538185|Nesk	Nik related kinase	protein-coding	3.184	0.317	0.155	2.373	2.998	1.643	3.269	7.258	3.421	4.724	2.098	1.364	4.029	4.188	4.404	4.512	3.385	4.269	0.763	0.587	0.329	0.654	0.505	0.295	2.792
10438	chr4	118773729	118781695	+	0	NA	Intergenic	RMER19B|LTR|ERVK	4874	NM_146309	258306	Mm.377426	NM_146309	ENSMUSG00000111159	Olfr1337	MOR259-10|Olfr219-ps1	olfactory receptor 1337	protein-coding	3.140	3.651	1.375	1.571	3.561	1.706	3.119	6.358	1.886	2.510	4.010	2.674	2.227	3.114	3.095	nan	1.664	2.670	6.694	3.543	2.210	6.555	4.157	3.089	3.785
3893	chr13	24352239	24353372	+	0	NA	intron (NM_001284519, intron 2 of 17)	MERVL_2A-int|LTR|ERVL	25401	NM_001111110	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	3.016	0.530	0.331	1.439	3.571	1.726	2.622	4.588	1.816	1.330	3.360	1.885	2.135	3.392	2.201	2.275	0.921	2.823	2.616	1.167	1.168	1.203	1.736	1.256	2.252
2617	chr11	88479066	88483199	+	0	NA	intron (NM_054043, intron 6 of 13)	intron (NM_054043, intron 6 of 13)	128359	NR_039545	100628571		NR_039545	ENSMUSG00000092985	Mir378b	mir-378b|mmu-mir-378b	microRNA 378b	ncRNA	3.674	11.866	4.806	5.763	3.671	1.416	3.059	3.597	2.724	3.012	0.894	1.839	2.822	4.302	3.953	3.312	2.859	3.845	5.606	3.550	2.230	nan	4.995	3.382	nan
4187	chr13	59568150	59570098	+	0	NA	Intergenic	ORR1C2|LTR|ERVL-MaLR	-11777	NM_023328	67269	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	4.543	1.476	0.688	2.136	2.252	1.062	8.878	4.212	2.966	4.150	1.249	1.146	5.665	8.633	3.296	4.194	4.038	3.799	0.720	1.227	0.547	1.238	1.141	0.379	4.927
13575	chr7	117251728	117269298	+	0	NA	Intergenic	Intergenic	-120466	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	4.702	4.033	2.165	5.075	6.476	5.513	4.744	6.186	3.208	3.832	2.279	2.312	5.776	nan	5.330	5.188	5.334	5.472	2.303	1.720	1.769	2.198	2.405	2.539	5.720
579	chr1	130253802	130256235	+	0	NA	Intergenic	L1Md_F2|LINE|L1	168025	NM_007827	13137	Mm.436759	NM_007827	ENSMUSG00000026401	Cd55b	AI323748|Daf|Daf-TM|Daf2|TM-DAF	CD55 molecule, decay accelerating factor for complement B	protein-coding	2.392	8.721	4.815	3.249	2.626	1.421	3.917	2.033	2.074	2.007	1.725	1.018	3.321	2.925	4.418	5.432	2.655	2.861	nan	3.157	2.206	5.170	4.106	3.070	3.432
12660	chr6	120094161	120102590	+	0	NA	intron (NM_016718, intron 1 of 3)	intron (NM_016718, intron 1 of 3)	4995	NM_016718	29862	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	6.817	2.571	1.484	6.513	4.781	3.140	8.266	8.358	5.709	6.802	2.365	1.401	7.701	12.400	8.586	11.892	7.580	9.632	1.503	1.203	1.107	0.977	nan	1.105	7.680
9303	chr3	52198587	52204141	+	0	NA	Intergenic	Intergenic	-66973	NM_019739	56458	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0.787	12.805	4.571	1.268	0.678	0.406	0.678	0.611	1.147	1.031	0.373	0.685	0.586	0.618	0.724	0.937	0.526	1.078	0.722	0.842	0.536	0.906	0.612	0.369	0.967
4701	chr14	56551159	56555663	+	0	NA	exon (NM_001014996, exon 7 of 17)	exon (NM_001014996, exon 7 of 17)	18435	NM_001014996	219103	Mm.212525	NM_001014996	ENSMUSG00000064128	Cenpj	4932437H03Rik|CPAP|Gm81|LAP|LIP1|Sas4	centromere protein J	protein-coding	5.487	nan	0.588	4.583	3.786	3.275	5.224	6.749	6.709	7.675	8.107	2.490	4.473	4.894	4.234	4.109	3.585	4.224	1.033	1.188	1.137	0.576	0.921	0.733	3.609
3301	chr12	40923767	40930286	+	0	NA	Intergenic	Intergenic	-97064	NM_053122	93757	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	3.908	nan	0.637	3.211	2.596	0.783	2.070	2.987	nan	3.790	1.471	1.000	4.689	6.837	3.525	5.152	3.707	2.615	nan	1.240	0.536	2.176	2.362	1.636	4.866
3136	chr11	121377854	121381227	+	0	NA	intron (NM_139147, intron 1 of 5)	intron (NM_139147, intron 1 of 5)	7664	NR_106095	102465713		NR_106095	ENSMUSG00000098981	Mir7236	Gm28005|mmu-mir-7236	microRNA 7236	ncRNA	3.962	nan	0.810	1.783	1.053	0.694	4.010	6.115	3.461	2.912	7.345	3.909	6.122	5.272	5.022	6.629	4.536	3.653	3.295	nan	0.879	2.585	1.357	1.022	2.998
8220	chr2	38841792	38844939	+	0	NA	intron (NM_010264, intron 3 of 10)	B4A|SINE|B4	-9370	NR_029568	387176		NR_029568	ENSMUSG00000065423	Mir181a-2	Mirn181|Mirn181a|Mirn181a-2|miR-181|mir-181a|mir-181a-2	microRNA 181a-2	ncRNA	2.355	1.375	0.703	2.237	1.254	0.779	2.004	3.103	2.703	nan	7.633	3.561	3.976	3.394	2.822	5.064	1.800	4.080	1.244	0.993	1.163	0.959	0.737	0.303	4.123
9369	chr3	66114216	66115449	+	0	NA	intron (NM_145820, intron 11 of 13)	intron (NM_145820, intron 11 of 13)	-105055	NM_008987	19288	Mm.276776	NM_008987	ENSMUSG00000027832	Ptx3	AI607804|TSG-14	pentraxin related gene	protein-coding	4.828	0.227	0.357	1.320	1.342	0.671	8.084	1.825	2.884	2.611	0.497	0.064	5.513	3.392	3.562	nan	5.061	4.379	0.476	0.592	0.353	0.335	0.341	0.449	3.947
12479	chr6	92853175	92856362	+	0	NA	intron (NM_175314, intron 16 of 29)	intron (NM_175314, intron 16 of 29)	46673	NM_175314	101401	Mm.158235	NM_175314	ENSMUSG00000030022	Adamts9	1810011L16Rik|8430403M15Rik|AW743315|E030027K14Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 9	protein-coding	4.121	0.846		nan	2.519	1.716	6.897	4.880	2.228	2.197	0.442	0.402	5.182	5.187	6.119	6.463	5.665	4.297	nan	0.491	0.342	0.653	1.028	0.527	3.867
4317	chr13	98781538	98787514	+	0	NA	intron (NM_172591, intron 6 of 25)	intron (NM_172591, intron 6 of 25)	30923	NM_172591	218503	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	4.026	0.488	0.216	4.541	5.248	3.019	5.080	5.859	3.168	2.729	4.784	3.178	4.175	5.710	6.837	3.500	nan	nan	0.734	0.575	0.431	1.142	0.949	0.650	5.759
11525	chr5	106030019	106031574	+	0	NA	Intergenic	Intergenic	154228	NM_018759	54367	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	1.909	1.217	1.241	1.888	1.650	1.839	nan	0.970	1.192	1.798	0.304	0.629	1.444	3.157	1.340	1.092	1.194	1.089	nan	1.026	1.141	0.366	1.050	0.897	1.131
10145	chr4	62025601	62027892	+	0	NA	Intergenic	L1VL4|LINE|L1	27371	NM_001012323	381530	Mm.460005	NM_001012323	ENSMUSG00000078672	Mup20	Gm12560|Mup24|OTTMUSG00000007485|darcin	major urinary protein 20	protein-coding	5.920	nan	0.495	3.547	1.935	1.039	3.352	8.010	3.951	3.214	1.173	1.166	5.468	4.561	4.336	6.226	4.018	4.747	nan	0.916	0.686	0.909	0.844	0.824	3.743
5863	chr16	19702707	19708288	+	0	NA	intron (NM_177356, intron 1 of 5)	intron (NM_177356, intron 1 of 5)	868	NM_177356	239739	Mm.258059	NM_177356	ENSMUSG00000041247	Lamp3	1200002D17Rik|Cd208|DC-LAMP|DCLAMP|LAMP|TSC403	lysosomal-associated membrane protein 3	protein-coding	8.035	0.375	0.404	4.691	6.657	3.952	4.820	3.727	6.384	7.190	0.505	0.640	8.394	7.179	6.059	nan	8.849	10.536	0.609	0.982	0.764	0.182	0.689	0.905	6.232
5061	chr15	12249732	12254431	+	0	NA	intron (NM_172958, intron 8 of 15)	MER102a|DNA|hAT-Charlie	46987	NM_172958	268783	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	9.178	8.025	2.431	9.547	3.692	2.375	9.999	11.631	7.121	11.365	5.744	4.563	12.047	9.310	10.549	10.012	8.703	9.814	5.100	1.959	1.962	5.049	3.070	3.294	12.252
1628	chr10	94507344	94513305	+	0	NA	Intergenic	Intergenic	-4533	NM_172051	319880	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	AW488095|C630016B22Rik|C88213|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	3.166	0.459	0.467	2.938	6.797	4.633	3.790	2.105	4.938	5.462	nan	0.591	3.129	4.954	3.858	4.516	3.157	6.324	nan	0.503	0.402	nan	0.568	0.567	2.630
9575	chr3	97552013	97554169	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	57099	NM_026539	68058	Mm.31761	NM_026539	ENSMUSG00000028089	Chd1l	4432404A22Rik|Alc1|Snf2p	chromodomain helicase DNA binding protein 1-like	protein-coding	3.410	0.867	0.307	1.431	0.928	0.246	2.191	0.865	1.706	2.202	nan	0.466	5.993	4.681	4.022	nan	1.435	2.778	0.653	0.277	0.261	0.395	0.498	0.174	5.317
9173	chr3	21972189	21977421	+	0	NA	Intergenic	MTEa|LTR|ERVL-MaLR	-101847	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	8.344	11.945	3.982	8.444	4.753	3.668	9.573	7.549	5.800	13.404	6.948	4.209	8.119	9.079	8.283	8.809	7.010	9.004	3.426	2.245	3.515	4.461	2.546	4.395	12.344
6011	chr16	32798810	32802337	+	0	NA	Intergenic	Intergenic	-3138	NM_001145874	224116	Mm.153301	NM_146071	ENSMUSG00000035638	Muc20	BC026367	mucin 20	protein-coding	2.638	1.596	1.218	1.443	1.278	0.523	1.607	4.498	1.399	1.747	1.334	0.862	nan	2.882	2.327	3.316	2.632	2.496	1.250	0.622	0.287	0.723	nan	0.823	2.483
3219	chr12	21290991	21297175	+	0	NA	intron (NM_018813, intron 4 of 17)	intron (NM_018813, intron 4 of 17)	7786	NM_018813	54451	Mm.356778	NM_018813	ENSMUSG00000054309	Cpsf3	-	cleavage and polyadenylation specificity factor 3	protein-coding	10.316	6.017	1.698	6.969	3.764	1.905	10.574	6.646	6.360	8.536	3.697	2.052	11.467	12.077	11.008	13.039	12.013	10.460	1.814	1.357	0.991	2.348	1.595	1.096	15.964
8161	chr2	33435706	33442654	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-7856	NM_001276332	241311	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	0.298	0.626	0.243	0.478	0.152	0.121	0.426	nan	0.143	nan	0.248	0.145	0.151	0.227	0.328	0.630	0.234	0.466	3.972	2.218	1.866	5.059	4.797	3.943	0.779
6042	chr16	34859944	34863530	+	0	NA	intron (NM_139300, intron 3 of 31)	(TTTG)n|Simple_repeat|Simple_repeat	76787	NM_139300	107589	Mm.33360	NM_139300	ENSMUSG00000022836	Mylk	9530072E15Rik|A930019C19Rik|AW489456|KRP|MLCK108|MLCK210|Mlck|nmMlck|smMLCK	myosin, light polypeptide kinase	protein-coding	4.570	0.967	0.476	2.850	2.504	2.446	5.838	7.123	3.861	3.601	1.134	3.442	6.468	5.224	4.522	5.337	2.934	6.017	0.599	0.693	0.426	0.469	0.338	0.320	nan
13863	chr7	146465579	146468676	+	0	NA	Intergenic	Intergenic	1152292	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	2.764	nan	0.356	2.201	2.062	1.568	4.691	7.385	3.471	2.299	3.459	3.609	3.974	5.060	4.255	4.440	3.191	3.836	1.838	1.167	0.970	2.295	nan	1.287	5.355
237	chr1	62880713	62882584	+	0	NA	Intergenic	L1M5|LINE|L1	-86916	NR_040601	74992	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	7.244	0.584	0.376	0.393	0.377	0.233	7.176	2.300	0.526	0.762	1.134	0.688	5.568	4.250	4.239	4.611	2.387	2.649	1.580	0.846	0.713	1.658	2.309	1.865	4.090
10029	chr4	44179063	44182394	+	0	NA	Intergenic	Intergenic	-12445	NM_001038993	73469	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	6.390	nan	2.051	6.622	4.079	2.656	5.555	6.717	4.808	7.350	4.856	3.258	5.630	7.458	6.389	7.734	4.364	nan	6.065	1.428	2.323	nan	2.557	3.254	7.888
14542	chr8	108272491	108275951	+	0	NA	Intergenic	Intergenic	310456	NR_077224	109215	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	7.655	1.511	0.927	4.499	5.876	2.950	3.603	6.291	2.698	3.850	1.953	1.354	3.731	5.790	3.532	5.522	5.584	4.351	2.400	3.835	2.843	nan	4.340	2.941	5.620
2371	chr11	69445633	69448436	+	0	NA	intron (NM_001081330, intron 61 of 85)	(TGGGGG)n|Simple_repeat|Simple_repeat	-33359	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	5.243	7.493	2.607	5.807	4.442	4.358	4.152	4.005	3.818	7.844	4.335	2.990	3.848	6.386	4.918	5.897	4.334	4.846	3.691	2.893	3.444	3.486	nan	4.386	6.716
15093	chr9	54996534	54998378	+	0	NA	intron (NM_176844, intron 1 of 5)	B3A|SINE|B2	16576	NM_176844	110835	Mm.103778	NM_176844	ENSMUSG00000035594	Chrna5	Acra-5|Acra5	cholinergic receptor, nicotinic, alpha polypeptide 5	protein-coding	5.149	8.584	2.513	9.071	1.521	1.612	4.038	4.638	3.556	10.956	4.244	3.349	4.553	4.635	8.305	7.782	2.488	8.026	3.909	1.445	2.766	6.218	1.810	4.016	15.881
2519	chr11	78901457	78904030	+	0	NA	Intergenic	Intergenic	-18044	NM_010927	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	5.783	4.433	2.737	4.923	5.819	3.952	2.879	3.490	2.301	2.929	2.979	1.596	1.839	4.243	nan	nan	2.296	nan	1.238	1.888	nan	1.466	1.757	1.190	2.661
6958	chr17	88369765	88373082	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-69289	NM_180974	14236	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	4.156	2.493	1.519	0.718	1.425	1.111	0.644	1.522	nan	1.995	6.848	1.851	0.875	1.314	0.833	1.634	2.273	1.289	0.433	0.837	0.644	0.468	0.577	0.619	1.355
14892	chr9	21150977	21153780	+	0	NA	Intergenic	RSINE1|SINE|B4	-2472	NM_016742	12539	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	3.715	1.053	0.587	2.696	3.073	2.175	3.438	4.376	2.592	2.482	1.425	0.740	2.591	4.216	3.088	3.591	2.514	3.390	1.698	1.923	2.110	2.767	0.535	1.539	5.502
2610	chr11	87946968	87979185	+	0	NA	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	23509	NM_001168472	68097	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	nan	0.978	0.608	nan	1.723	1.092	1.881	2.369	1.321	1.622	3.211	2.041	1.389	2.574	2.311	2.208	1.685	2.084	7.269	6.096	5.974	nan	5.954	5.142	nan
9586	chr3	97865128	97868155	+	0	NA	intron (NM_001039376, intron 1 of 46)	L3|LINE|CR1	22066	NM_001289702	83679	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	5.104	2.469	0.778	4.394	3.688	1.997	4.604	2.801	3.418	4.392	nan	1.422	5.627	6.561	4.851	5.991	5.936	5.129	2.463	1.682	1.247	1.175	2.051	1.372	5.103
4154	chr13	54604752	54606937	+	0	NA	intron (NM_001347512, intron 2 of 5)	intron (NM_001347512, intron 2 of 5)	5529	NM_028870	74325	Mm.290026	NM_028870	ENSMUSG00000047547	Cltb	2310046E19Rik|lcb	clathrin, light polypeptide (Lcb)	protein-coding	nan	7.043	2.030	5.656	1.331	1.162	1.860	2.293	2.550	5.680	1.683	1.498	2.258	2.933	4.444	4.218	1.668	4.314	4.341	1.706	2.944	5.608	3.282	4.518	6.872
3212	chr12	17717169	17719280	+	0	NA	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	27410	NM_016677	53602	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	3.001	2.670	0.364	5.026	2.918	2.502	3.797	4.136	2.947	2.775	1.600	1.696	2.837	3.997	3.622	3.856	1.930	4.342	2.435	1.572	1.251	2.965	1.645	1.307	4.462
4407	chr13	111153174	111158773	+	0	NA	Intergenic	Intergenic	73458	NR_045908	73129	Mm.417826	NR_045908		3110015C05Rik	-	RIKEN cDNA 3110015C05 gene	ncRNA	2.872	nan	0.539	2.761	2.448	1.126	1.685	0.882	nan	4.534	0.935	0.567	2.741	3.582	2.927	3.283	1.726	4.700	1.096	1.591	1.226	nan	1.631	1.070	2.788
914	chr1	179403446	179405442	+	0	NA	intron (NM_027188, intron 5 of 11)	intron (NM_027188, intron 5 of 11)	113559	NM_027188	69726	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	5.374	0.385	0.512	1.595	3.203	2.218	3.799	3.868	3.181	3.216	0.750	0.747	4.974	5.469	3.792	4.786	4.154	4.401	1.869	1.294	0.798	2.166	1.041	1.024	2.293
14682	chr8	122649815	122652051	+	0	NA	intron (NM_009824, intron 1 of 11)	intron (NM_009824, intron 1 of 11)	27242	NM_001109873	12398	Mm.194339	NM_009824	ENSMUSG00000006362	Cbfa2t3	A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2	core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	protein-coding	5.166	0.909	0.598	5.082	1.851	0.947	2.272	3.323	2.927	2.751	1.495	0.895	3.589	5.444	2.625	3.692	2.375	4.348	0.723	1.158	0.642	1.136	0.402	0.610	4.792
4756	chr14	64160664	64163933	+	0	NA	intron (NM_001347639, intron 5 of 5)	MTEa|LTR|ERVL-MaLR	57975	NM_028525	73382	Mm.481055	NM_028525	ENSMUSG00000021966	Prss52	1700049K14Rik|Tesp3	protease, serine 52	protein-coding	3.459	6.180	2.049	7.737	1.336	1.165	1.940	3.032	2.570	4.290	2.453	2.229	3.058	3.172	4.533	4.792	1.658	4.715	3.059	nan	1.566	3.500	2.285	2.518	6.420
300	chr1	74190198	74198786	+	0	NA	intron (NM_178241, intron 1 of 1)	intron (NM_178241, intron 1 of 1)	139	NM_178241	227288	Mm.337035	NM_178241	ENSMUSG00000048480	Cxcr1	Il8ra	chemokine (C-X-C motif) receptor 1	protein-coding	10.826	0.739	0.620	1.283	1.929	1.288	4.898	5.865	2.373	2.409	2.409	2.073	2.778	3.364	3.686	6.140	5.804	nan	nan	nan	0.775	0.648	nan	0.812	nan
14427	chr8	88035852	88037907	+	0	NA	Intergenic	Intergenic	-77284	NM_033327	94187	Mm.23452	NM_033327	ENSMUSG00000045333	Zfp423	Ebfaz|Roaz|Zfp104|Znf423|ataxia1|mKIAA0760|nur12	zinc finger protein 423	protein-coding	5.149	0.533	0.808	2.654	3.774	2.466	4.522	4.519	3.268	3.819	5.510	2.125	6.833	7.439	4.878	6.164	5.717	4.659	nan	0.791	0.457	1.459	0.268	0.438	5.720
9702	chr3	108524220	108525660	+	0	NA	intron (NM_001346518, intron 1 of 21)	L1_Mus1|LINE|L1	11582	NM_001033304	229722	Mm.316890	NM_001033304	ENSMUSG00000040412	5330417C22Rik	BB183350	RIKEN cDNA 5330417C22 gene	protein-coding	4.474	10.677	3.704	5.826	2.159	1.663	6.503	4.400	3.644	6.164	5.835	3.098	4.987	5.034	7.867	7.300	3.882	6.874	3.813	2.656	1.264	5.180	3.500	3.572	8.255
1439	chr10	75295289	75300918	+	0	NA	intron (NM_153406, intron 13 of 15)	L1MB5|LINE|L1	-18774	NM_009630	11540	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	10.144	10.714	4.725	7.155	5.377	3.170	7.929	7.293	4.837	6.506	2.782	2.167	7.466	9.691	8.857	9.957	8.668	7.559	nan	1.819	1.546	1.701	2.169	2.144	12.742
4419	chr13	112756503	112758845	+	0	NA	Intergenic	Intergenic	-43103	NM_008903	19012	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	3.156	nan	0.640	1.354	0.913	0.526	3.213	1.494	nan	1.317	0.998	0.752	3.659	2.099	3.499	3.355	1.253	nan	1.802	0.886	0.285	nan	0.964	1.006	2.320
3654	chr12	103245981	103247791	+	0	NA	Intergenic	Intergenic	-4740	NM_133364	170952	Mm.217019	NM_133364	ENSMUSG00000041669	Prima1	B230212M13Rik|BB120497|PRiMA	proline rich membrane anchor 1	protein-coding	4.340	0.820	0.437	nan	2.402	1.497	5.346	4.224	3.051	3.560	0.649	0.374	6.988	6.615	4.830	8.930	6.107	3.806	2.952	1.958	0.609	4.217	0.868	0.156	7.574
6330	chr17	12311072	12313537	+	0	NA	intron (NM_011948, intron 1 of 26)	intron (NM_011948, intron 1 of 26)	6356	NM_011948	26407	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	5.117	8.565	3.160	7.009	3.509	1.226	3.572	3.415	2.543	3.519	1.987	1.380	2.491	3.030	4.408	nan	4.167	5.121	5.651	4.222	2.857	6.656	4.726	3.145	4.320
9005	chr2	166630637	166635755	+	0	NA	intron (NM_177782, intron 5 of 39)	MLT1K|LTR|ERVL-MaLR	-39522	NR_105783	102465188		NR_105783	ENSMUSG00000098675	Mir6364	Gm27327|mmu-mir-6364	microRNA 6364	ncRNA	8.060	3.912	1.388	6.239	7.432	5.578	8.281	8.710	5.675	8.170	4.226	2.456	9.102	nan	7.166	10.178	8.237	nan	nan	1.978	2.533	3.052	2.648	2.532	nan
11108	chr5	31214821	31219623	+	0	NA	intron (NM_008014, intron 1 of 9)	B2_Mm2|SINE|B2	3323	NM_008014	14208	Mm.14501	NM_008014	ENSMUSG00000029147	Ppm1g	AI385652|Fin13	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	protein-coding	7.250	3.429	1.108	7.723	3.180	1.590	2.756	3.156	3.288	4.844	2.173	0.947	2.413	6.009	3.760	3.872	2.289	4.691	1.937	2.144	1.545	2.047	1.979	1.306	5.347
13773	chr7	134654140	134658267	+	0	NA	Intergenic	Intergenic	-14484	NM_001033420	330662	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik	dedicator of cytokinesis 1	protein-coding	6.859	nan	3.210	6.297	6.164	4.723	7.566	9.567	4.077	9.155	6.456	2.528	7.434	7.953	7.398	7.646	6.115	6.417	4.065	2.509	3.580	4.141	3.291	4.525	10.017
1407	chr10	69290924	69292577	+	0	NA	TTS (NM_001252636)	TTS (NM_001252636)	61162	NM_007659	12534	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	4.652	0.581	0.493	1.965	3.827	2.011	2.469	2.776	1.147	1.871	0.945	0.387	4.060	5.654	2.127	4.244	3.119	4.122	0.657	0.576	0.615	0.472	0.374	0.645	3.756
12332	chr6	72794467	72795712	+	0	NA	Intergenic	MER74A|LTR|ERVL	-6044	NM_009332	21415	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	2.577	1.130	0.510	1.138	4.455	3.791	6.374	3.260	2.102	1.811	1.401	1.103	3.508	4.209	2.873	3.348	4.817	2.658	0.503	0.615	1.783	0.486	0.897	1.418	2.454
3946	chr13	34220615	34224510	+	0	NA	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	59598	NM_001110515	69666	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	2.380	nan	0.789	1.855	1.049	0.409	nan	nan	nan	nan	1.273	0.619	0.949	2.024	1.821	2.356	0.837	nan	3.067	1.243	0.929	5.228	1.249	0.836	nan
496	chr1	108295524	108301104	+	0	NA	Intergenic	L1_Mus2|LINE|L1	381055	NR_102307	319596	Mm.136054	NR_102306	ENSMUSG00000100457	D830032E09Rik	-	RIKEN cDNA D830032E09 gene	ncRNA	2.720	nan	0.271	1.150	0.690	0.596	9.036	3.119	1.886	2.186	2.383	2.210	5.428	3.493	3.955	5.343	2.026	2.555	1.392	0.433	0.250	1.551	1.015	0.552	4.117
6246	chr16	94738851	94742096	+	0	NA	Intergenic	Intergenic	116217	NM_001025590	16522	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding	3.819	2.786	1.405	3.257	1.675	0.834	1.490	3.077	nan	1.353	3.330	1.186	1.013	1.641	nan	2.049	1.531	2.359	4.533	4.449	1.752	4.987	5.402	4.338	2.147
2829	chr11	102265715	102268825	+	0	NA	Intergenic	Intergenic	-1553	NM_148953	217217	Mm.216432	NM_148953	ENSMUSG00000034768	Asb16	-	ankyrin repeat and SOCS box-containing 16	protein-coding	4.818	nan	1.496	6.247	2.463	1.649	4.377	5.521	3.748	7.027	2.570	1.224	6.558	8.270	6.727	6.204	3.111	6.462	2.626	nan	1.919	3.495	nan	nan	9.728
14526	chr8	107983634	107987210	+	0	NA	Intergenic	Intergenic	-396940	NM_010817	17463	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	4.805	0.884	0.568	3.728	2.868	2.343	2.598	2.399	4.705	6.361	0.633	0.628	6.440	7.849	6.330	9.955	7.331	6.610	0.630	0.924	1.104	nan	0.726	0.649	10.344
5170	chr15	54326770	54328833	+	0	NA	Intergenic	Intergenic	-49317	NM_008764	18383	Mm.15383	NM_008764	ENSMUSG00000063727	Tnfrsf11b	OCIF|Opg|TR1	tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)	protein-coding	3.372	0.406	0.440	nan	4.039	1.989	5.272	4.802	3.270	nan	3.353	3.791	5.374	4.660	3.433	3.481	4.542	2.717	1.091	1.654	0.917	0.887	1.861	1.605	1.325
7738	chr19	36905968	36910007	+	0	NA	Intergenic	Intergenic	11612	NM_028263	72514	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	9.860	8.141	3.664	7.187	7.880	6.206	13.103	11.658	6.077	12.830	8.740	5.888	7.823	10.235	8.204	9.072	11.747	7.815	2.772	3.560	4.077	4.206	4.428	4.909	11.974
605	chr1	133407553	133411812	+	0	NA	intron (NM_011439, intron 1 of 13)	Charlie12|DNA|hAT-Charlie	14530	NM_011439	20668	Mm.8575	NM_011439	ENSMUSG00000070643	Sox13	AA407916|AW259412|AW540933|Sox-13	SRY (sex determining region Y)-box 13	protein-coding	7.360	0.832	0.747	nan	2.355	1.444	1.964	1.720	2.200	2.055	2.253	1.288	2.479	2.046	2.247	nan	3.407	3.491	0.977	0.718	0.580	0.643	0.882	0.570	nan
2987	chr11	115772378	115774142	+	0	NA	intron (NM_028014, intron 1 of 31)	B2_Mm2|SINE|B2	7827	NM_028014	71947	Mm.23168	NM_028014	ENSMUSG00000020747	Tmem94	2310067B10Rik|Kiaa0195|mKIAA0195	transmembrane protein 94	protein-coding	2.337	1.289	0.885	3.771	2.959	1.873	5.584	8.283	3.795	4.379	8.543	3.937	7.488	7.241	11.327	8.280	4.541	4.585	0.967	nan	2.102	5.724	2.189	1.839	7.755
9523	chr3	94912095	94915647	+	0	NA	Intergenic	L1MD1|LINE|L1	-19212	NM_009150	20341	Mm.196558	NM_009150	ENSMUSG00000068874	Selenbp1	Lp56|Lpsb|SBP56	selenium binding protein 1	protein-coding	5.606	3.487	3.068	3.849	5.457	4.939	8.355	6.528	3.661	4.592	nan	2.742	5.827	8.065	4.548	4.023	5.443	4.211	2.207	2.923	2.462	2.020	2.585	2.959	5.408
4855	chr14	76189300	76191290	+	0	NA	Intergenic	Intergenic	79404	NM_013745	27275	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	4.020	1.393	0.656	1.943	1.117	0.732	7.416	9.883	7.925	8.073	2.644	4.128	3.627	6.083	5.418	7.390	4.784	6.021	1.059	0.576	0.657	0.782	0.634	0.417	2.739
1699	chr10	107368674	107370102	+	0	NA	intron (NM_001039354, intron 2 of 5)	L1Md_T|LINE|L1	96994	NM_001284329	108030	Mm.268025	NM_001033223	ENSMUSG00000019906	Lin7a	AI848705|LIN-7A|MALS-1|TIP-33|Veli|Veli1	lin-7 homolog A (C. elegans)	protein-coding	4.082	2.787	1.948	3.112	5.106	2.413	1.733	4.199	2.998	2.994	2.083	1.927	2.361	3.123	3.413	3.045	2.364	3.619	1.860	1.544	1.320	3.275	1.198	1.098	2.242
10525	chr4	125927164	125930559	+	0	NA	Intergenic	Intergenic	-6551	NR_015560	72395	Mm.112888	NR_015560	ENSMUSG00000085562	2610028E06Rik	BB043107	RIKEN cDNA 2610028E06 gene	ncRNA	3.947	2.657	0.991	6.808	2.660	1.461	1.746	1.693	2.648	2.615	2.627	1.217	1.505	2.713	2.311	2.857	1.533	3.904	1.362	1.568	1.882	1.983	1.057	1.216	4.923
15823	chrX	137099458	137100352	+	0	NA	Intergenic	Intergenic	20421	NM_007957	13984	Mm.8017	NM_007957	ENSMUSG00000023443	Esx1	Spx1	extraembryonic, spermatogenesis, homeobox 1	protein-coding	3.722	0.760	0.173	5.109	1.787	0.760	2.161	2.301	3.015	2.742	2.002	0.769	3.892	3.245	3.673	5.742	1.839	5.201	0.641	0.644	0.166	2.267	0.682	0.154	5.973
10399	chr4	115832122	115845629	+	0	NA	promoter-TSS (NM_001285488)	promoter-TSS (NM_001285488)	-323	NM_001285488	17346	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	3.355	1.234	0.810	2.306	2.568	1.946	3.902	4.882	2.573	2.363	1.417	2.134	4.225	3.869	3.567	nan	2.984	3.625	6.099	4.622	3.068	7.196	4.510	3.459	3.416
1228	chr10	40194428	40200694	+	0	NA	Intergenic	B3|SINE|B2	49418	NM_001042556	67239	Mm.11480	NM_023323	ENSMUSG00000038510	Rpf2	2810470K21Rik|AU040229|AU043242|Bxdc1	ribosome production factor 2 homolog	protein-coding	5.167	4.700	1.863	3.275	0.882	0.668	2.279	3.280	3.840	2.785	3.444	5.711	2.166	2.904	4.128	4.387	3.514	4.697	0.998	1.228	0.994	0.774	0.473	0.467	4.047
14509	chr8	98376088	98378664	+	0	NA	Intergenic	L1Md_A|LINE|L1	-634511	NR_110579	100873092	Mm.414599	NR_110579	ENSMUSG00000089819	Gm15679	OTTMUSG00000025218	predicted gene 15679	ncRNA	5.607	2.376	1.181	3.323	2.153	1.162	5.419	5.615	2.477	3.154	2.087	1.645	5.456	5.477	6.752	8.717	6.542	4.999	2.394	1.812	1.608	4.055	1.769	1.303	8.968
14227	chr8	48758769	48762366	+	0	NA	Intergenic	Intergenic	-85877	NM_011857	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding	9.609	14.897	4.596	9.215	5.295	3.723	6.717	10.501	4.454	11.481	6.244	2.800	8.526	8.708	10.038	13.096	8.482	8.784	4.149	2.810	4.012	7.471	2.510	4.095	17.472
6117	chr16	52058922	52062490	+	0	NA	intron (NM_001033238, intron 3 of 17)	intron (NM_001033238, intron 3 of 17)	29157	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	6.217	7.754	2.913	6.314	5.600	2.969	2.877	3.577	4.524	5.125	6.591	3.050	4.138	6.460	3.870	4.910	2.597	6.253	1.567	2.541	0.928	2.650	1.540	0.773	3.870
5788	chr16	10739940	10742404	+	0	NA	intron (NM_001204229, intron 22 of 22)	(A)n|Simple_repeat|Simple_repeat	44364	NM_009896	12703	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	4.371	6.595	2.647	4.016	2.371	0.843	3.668	2.283	1.904	2.876	1.877	1.649	2.088	2.593	3.221	5.241	2.726	4.398	2.896	1.850	1.488	2.546	3.124	1.637	6.859
5917	chr16	23270520	23273367	+	0	NA	intron (NM_001252505, intron 2 of 7)	intron (NM_001252505, intron 2 of 7)	-18527	NM_001252506	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	5.038	11.584	3.645	3.771	2.473	1.723	7.144	3.855	3.476	4.391	6.595	2.447	4.374	6.234	4.730	6.622	3.305	3.145	1.088	1.032	1.248	1.727	nan	1.068	6.659
694	chr1	138027460	138037354	+	0	NA	Intergenic	(TATG)n|Simple_repeat|Simple_repeat	65768	NR_029820	723890		NR_029820	ENSMUSG00000065458	Mir181b-1	Mirn181b-1|mir-181b-1	microRNA 181b-1	ncRNA	5.695	15.336	4.842	4.666	1.850	0.802	2.873	5.737	3.502	4.762	4.670	2.436	4.822	4.453	4.890	6.970	3.409	4.125	2.176	2.099	1.725	2.309	1.205	1.164	6.161
9165	chr3	21532504	21534467	+	0	NA	Intergenic	RMER17C-int|LTR|ERVK	-543167	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	1.411	nan	0.629	3.762	2.383	1.367	4.881	1.319	4.697	5.933	4.180	2.771	7.127	6.393	3.472	1.239	1.323	4.470	0.742	0.466	0.263	0.550	0.401	0.345	2.047
14973	chr9	40588246	40593202	+	0	NA	Intergenic	Lx9|LINE|L1	-95240	NM_133733	71566	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	8.074	2.868	1.142	6.358	3.292	1.248	4.473	6.752	4.962	6.192	5.153	3.716	4.715	7.614	5.923	5.878	nan	6.070	nan	1.737	1.005	2.083	2.067	1.012	7.526
9812	chr3	132872545	132878932	+	0	NA	intron (NR_102297, intron 1 of 3)	intron (NR_102297, intron 1 of 3)	2858	NR_102297	101243624	Mm.306256	NR_102297	ENSMUSG00000106230	Gm29811	-	predicted gene, 29811	ncRNA	6.867	0.347	0.549	3.737	8.013	5.496	12.023	7.583	5.067	5.955	1.212	1.380	11.074	10.822	7.381	6.842	9.360	6.550	1.184	1.307	1.039	0.718	1.607	1.393	5.567
5426	chr15	79219434	79223040	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-7936	NM_008837	18693	Mm.259464	NM_008837	ENSMUSG00000068206	Pick1	Prkcabp	protein interacting with C kinase 1	protein-coding	8.790	nan	0.868	7.691	4.980	3.376	6.448	12.074	3.622	5.550	nan	1.977	5.753	6.182	4.769	7.464	4.750	6.521	3.265	3.469	2.816	4.624	4.493	2.810	6.968
14168	chr8	37771698	37773584	+	0	NA	intron (NM_145841, intron 2 of 7)	Lx2|LINE|L1	479561	NR_029884	723860		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA	4.036	0.337	0.207	2.671	2.934	1.773	2.487	2.087	2.167	3.189	0.748	0.599	3.385	4.410	1.366	2.545	2.356	2.853	0.384	0.546	0.393	0.299	0.374	0.235	1.677
14737	chr8	125220399	125223396	+	0	NA	intron (NM_174853, intron 9 of 11)	B2_Mm2|SINE|B2	167702	NM_174854	244667	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	1.272	9.297	2.772	nan	0.535	0.130	nan	nan	0.678	0.910	0.501	0.420	0.469	0.395	nan	1.352	0.845	nan	nan	6.000	4.141	nan	6.550	4.737	2.213
5371	chr15	76952765	76958000	+	0	NA	Intergenic	Intergenic	6838	NM_054099	117171	Mm.322968	NM_054099	ENSMUSG00000063236	1110038F14Rik	-	RIKEN cDNA 1110038F14 gene	protein-coding	2.244	nan	0.545	nan	0.948	0.550	2.196	6.397	1.870	nan	nan	0.715	3.026	2.131	3.313	3.247	2.965	3.027	4.350	1.918	1.188	6.082	2.812	1.925	2.075
4444	chr13	118008908	118014189	+	0	NA	Intergenic	Intergenic	-291537	NR_045508	71100	Mm.414841	NR_045508	ENSMUSG00000079048	4933413L06Rik	-	RIKEN cDNA 4933413L06 gene	ncRNA	7.379	4.124	1.581	4.961	3.633	2.062	3.643	4.304	3.883	6.302	5.128	1.150	6.174	7.629	4.839	6.732	4.772	4.700	3.811	2.688	1.602	3.615	3.829	3.300	8.705
13076	chr7	30051869	30054127	+	0	NA	Intergenic	B3|SINE|B2	-1602	NM_178733	243906	Mm.347644	NM_011748	ENSMUSG00000053985	Zfp14	4732429I09Rik|Krox-9|Zfp-14|mKIAA1559	zinc finger protein 14	protein-coding	2.339	0.830	0.918	2.409	5.172	4.019	3.593	5.509	2.961	2.283	3.001	2.236	3.955	4.762	2.752	2.864	3.465	3.087	1.415	1.069	0.785	1.254	1.611	1.660	3.224
11372	chr5	77552812	77561182	+	0	NA	Intergenic	L1Md_F2|LINE|L1	91509	NR_131050	69370	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	5.040	2.047	0.806	3.203	4.641	2.921	6.429	3.009	3.152	4.963	2.565	1.297	5.469	8.816	4.295	nan	3.886	nan	0.533	0.760	0.483	0.845	0.361	0.442	4.771
3788	chr12	117561499	117562993	+	0	NA	intron (NM_175930, intron 3 of 27)	(TG)n|Simple_repeat|Simple_repeat	45767	NM_175930	217944	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	3.173	0.509	0.610	1.050	1.655	1.173	3.623	1.382	1.638	2.302	1.375	1.009	4.689	4.359	2.354	2.695	2.236	3.425	0.927	0.422	0.539	0.506	0.250	0.115	1.940
3148	chr12	3338605	3341291	+	0	NA	Intergenic	Intergenic	-25184	NM_008445	16570	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	3.041	9.553	8.344	1.406	4.069	3.580	0.935	1.429	2.017	2.461	1.555	1.059	2.015	4.257	1.428	2.132	2.146	1.904	0.799	1.242	1.780	0.563	0.671	0.761	3.575
2244	chr11	58027474	58030100	+	0	NA	intron (NM_028451, intron 1 of 18)	intron (NM_028451, intron 1 of 18)	19723	NM_028451	73158	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	4.457	11.183	3.832	6.144	2.254	0.982	2.202	3.385	2.856	3.391	1.976	1.325	2.726	nan	3.511	4.373	2.894	4.449	nan	1.109	0.839	2.236	1.356	0.619	nan
14380	chr8	83368160	83382709	+	0	NA	intron (NM_026233, intron 10 of 10)	MTA_Mm|LTR|ERVL-MaLR	-14408	NM_001329627	12745	Mm.358581	NM_009904	ENSMUSG00000002190	Clgn	4930459O04Rik|A2/6|AI528775|Cln	calmegin	protein-coding	6.165	0.972	0.694	3.484	5.708	4.195	5.343	8.238	nan	4.230	6.486	3.947	7.196	7.728	6.584	8.399	7.944	5.688	nan	3.866	3.246	4.797	3.367	2.919	6.672
9503	chr3	93356402	93357440	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-36778	NM_009100	20129	Mm.1417	NM_009100	ENSMUSG00000041984	Rptn	-	repetin	protein-coding	4.213	3.520	1.965	3.718	2.432	2.124	1.722	2.212	2.186	3.075	nan	1.710	2.758	3.742	2.432	2.574	2.316	2.478	0.600	1.150	0.655	0.562	0.369	0.185	2.725
7201	chr18	39825528	39827356	+	0	NA	Intergenic	(TTTG)n|Simple_repeat|Simple_repeat	52945	NM_011033	18459	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	7.181	2.424	1.615	3.733	3.148	1.605	4.370	4.404	3.529	3.386	1.102	0.768	5.021	5.751	4.078	nan	3.891	6.902	0.894	0.586	0.577	0.618	0.200	0.475	4.644
7064	chr18	22806283	22809350	+	0	NA	intron (NM_001347510, intron 6 of 9)	L1Md_F2|LINE|L1	230847	NM_001161483	319211	Mm.209896	NM_199024	ENSMUSG00000041923	Nol4	1700013J13Rik|4930568N03Rik|Gm1262	nucleolar protein 4	protein-coding	nan	1.124	0.373	0.348	0.062	0.121	0.257	0.396	0.182	0.215	0.220	0.237	0.223	0.134	0.153	0.419	0.565	0.336	7.206	3.187	1.564	6.533	4.082	2.452	0.266
9220	chr3	32233240	32234708	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-131515	NR_027966	67576	Mm.435324	NR_027966		4930429B21Rik	-	RIKEN cDNA 4930429B21 gene	ncRNA	3.243	6.289	2.642	3.776	3.399	1.786	2.328	2.465	nan	2.426	1.942	0.829	2.723	4.320	4.177	4.902	2.265	4.262	0.902	0.661	0.623	2.377	0.296	0.171	4.747
8174	chr2	34812523	34821917	+	0	NA	intron (NM_001164768, intron 1 of 5)	B2_Mm1t|SINE|B2	5961	NM_001164768	30050	Mm.4465	NM_013890	ENSMUSG00000035949	Fbxw2	2700071L08Rik|FBW2|Fwd2|MD6	F-box and WD-40 domain protein 2	protein-coding	4.096	14.791	5.894	4.432	2.937	1.445	2.889	4.508	3.194	nan	1.370	1.745	4.780	5.000	3.632	5.232	3.809	4.331	1.575	1.976	1.362	1.960	1.133	0.933	5.422
14924	chr9	25391271	25393797	+	0	NA	Intergenic	L1_Mus3|LINE|L1	-89063	NM_026189	67484	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	1.899	0.748	0.413	0.845	0.547	0.396	1.597	4.126	1.303	1.139	0.855	1.362	0.933	1.075	1.562	nan	0.417	1.440	0.539	0.837	0.507	0.539	0.594	0.567	1.828
12709	chr6	125462238	125466502	+	0	NA	intron (NM_007657, intron 3 of 7)	intron (NM_007657, intron 3 of 7)	30385	NM_007657	12527	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	4.756	nan	0.394	2.015	2.609	0.916	4.699	6.672	2.286	2.858	1.095	1.171	4.055	5.524	5.199	7.328	4.043	4.767	2.823	1.682	1.294	2.640	2.753	1.785	4.809
3999	chr13	38248055	38252556	+	0	NA	Intergenic	Intergenic	45366	NM_026382	67797	Mm.250783	NM_026382	ENSMUSG00000021431	Snrnp48	1110050F08Rik|6530403A03Rik|C6orf151	small nuclear ribonucleoprotein 48 (U11/U12)	protein-coding	0.608	nan	0.649	0.608	0.467	0.332	nan	nan	nan	nan	6.785	2.952	0.501	0.567	0.863	nan	0.849	nan	2.667	2.273	1.854	1.766	2.417	2.357	nan
4327	chr13	99894650	99896040	+	0	NA	Intergenic	Intergenic	5338	NM_013732	27220	Mm.75498	NM_013732	ENSMUSG00000021647	Cartpt	Cart	CART prepropeptide	protein-coding	4.833	1.343	0.710	5.223	4.284	2.044	2.072	2.897	2.054	3.050	2.830	1.905	2.230	3.402	2.375	1.596	1.742	3.266	1.456	1.581	1.584	1.865	2.784	1.072	4.236
14142	chr8	35661042	35666568	+	0	NA	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-74785	NR_040376	100504714	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	4.247	0.999	0.710	1.592	2.453	1.141	4.082	6.884	4.444	4.929	2.462	1.201	4.187	5.682	4.842	6.034	5.570	3.712	0.958	1.138	0.823	3.037	0.677	0.500	3.790
11636	chr5	118603007	118605859	+	0	NA	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	43714	NM_172424	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	5.755	2.743	0.843	5.826	3.612	2.895	6.511	3.404	3.965	8.876	3.005	1.820	5.493	7.255	5.158	5.506	3.466	7.305	nan	nan	1.301	1.853	nan	1.903	6.651
9487	chr3	90095769	90097855	+	0	NA	intron (NM_001271764, intron 8 of 8)	B2_Mm1t|SINE|B2	-7320	NM_029937	77595	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	9.337	10.929	4.327	7.587	5.490	4.773	10.585	8.033	5.606	10.300	6.671	3.772	8.093	10.869	7.001	nan	7.256	7.285	nan	2.908	4.152	5.628	4.977	4.521	11.924
6079	chr16	44177615	44179964	+	0	NA	intron (NM_001029889, intron 1 of 7)	intron (NM_001029889, intron 1 of 7)	5392	NM_001029889	207806	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	5.370	0.889	0.660	2.882	4.694	2.119	2.802	7.478	4.535	5.596	1.853	1.741	5.549	8.855	4.415	5.409	5.357	8.197	3.950	2.642	1.057	2.293	5.650	2.696	2.972
7650	chr19	24123383	24125543	+	0	NA	intron (NM_001198985, intron 7 of 22)	intron (NM_001198985, intron 7 of 22)	49677	NM_001198985	21873	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	5.529	0.759	0.180	3.735	3.369	1.059	3.946	2.626	3.146	4.479	nan	0.605	3.866	6.678	6.042	7.152	4.042	6.728	nan	0.406	0.303	0.816	nan	0.300	6.524
7313	chr18	62350985	62352543	+	0	NA	intron (NM_008313, intron 2 of 6)	(CA)n|Simple_repeat|Simple_repeat	27560	NM_008313	15562	Mm.20440	NM_008313	ENSMUSG00000026322	Htr4	5-HT-4|5-HT4|5-HT<4L>|5HTR4	5 hydroxytryptamine (serotonin) receptor 4	protein-coding	6.007	3.070	0.922	2.724	1.741	1.298	1.830	5.288	2.448	2.404	3.707	0.979	2.256	3.740	2.634	2.536	1.540	3.106	nan	1.447	0.532	2.792	0.507	0.368	3.069
14207	chr8	47563667	47565965	+	0	NA	Intergenic	Intergenic	31171	NM_203507	192174	Mm.273081	NM_203507	ENSMUSG00000031568	Rwdd4a	BC016198|Gm1942|Rwdd4	RWD domain containing 4A	protein-coding	3.091	0.995	0.395	2.783	2.339	0.974	2.029	6.316	2.833	3.672	3.922	2.393	4.549	5.233	3.593	3.234	2.795	4.095	3.200	2.449	1.669	3.461	4.255	3.327	2.635
14063	chr8	18767297	18769360	+	0	NA	intron (NM_173189, intron 12 of 13)	intron (NM_173189, intron 12 of 13)	-26766	NM_007426	11601	Mm.439874	NM_007426	ENSMUSG00000031465	Angpt2	Agpt2|Ang-2|Ang2	angiopoietin 2	protein-coding	7.052	1.501	0.625	4.388	3.677	1.394	5.580	10.388	4.715	3.609	3.731	3.260	9.139	7.502	8.766	9.764	7.280	7.947	1.131	1.673	1.034	6.771	0.632	0.831	5.692
8320	chr2	68698993	68700909	+	0	NA	intron (NM_183113, intron 13 of 28)	L1Md_A|LINE|L1	42067	NM_183113	75721	Mm.65456	NM_183113	ENSMUSG00000079324	4932414N04Rik	-	RIKEN cDNA 4932414N04 gene	protein-coding	6.992	11.693	3.727	6.100	1.385	0.547	7.452	8.712	2.377	4.915	2.282	0.682	5.842	5.924	9.291	9.111	5.453	6.753	5.567	1.917	2.142	6.021	3.588	3.951	16.557
3201	chr12	16859706	16862268	+	0	NA	Intergenic	Intergenic	-33991	NM_009072	19878	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	12.254	0.970	0.623	5.396	3.606	1.687	7.824	6.073	4.975	5.718	4.522	2.984	8.817	10.731	9.024	9.601	6.294	7.860	2.649	1.464	0.953	2.001	1.517	1.271	11.230
11064	chr5	23834562	23835785	+	0	NA	intron (NR_037304, intron 3 of 4)	B1_Mus2|SINE|Alu	8972	NM_025394	66169	Mm.291868	NM_025394	ENSMUSG00000028998	Tomm7	1110020J08Rik|AW047273|Tom7	translocase of outer mitochondrial membrane 7 homolog (yeast)	protein-coding	0.732	1.188	0.316	3.484	0.610	0.602	3.165	2.564	1.502	3.238	0.538	0.366	3.238	4.285	4.754	4.714	1.210	2.515	3.325	1.824	2.193	4.865	3.306	2.772	3.676
3257	chr12	30221591	30225142	+	0	NA	intron (NR_136915, intron 14 of 16)	intron (NR_136915, intron 14 of 16)	-90742	NM_009417	22018	Mm.4991	NM_009417	ENSMUSG00000020673	Tpo	-	thyroid peroxidase	protein-coding	0.290	1.079	0.677	0.189	0.054	0.035	0.247	0.173	0.275	0.204	0.239	0.028	0.047	0.257	0.203	0.491	0.294	0.265	4.696	1.819	0.880	3.632	1.482	1.091	0.401
11694	chr5	123567127	123568222	+	0	NA	intron (NM_029929, intron 4 of 12)	PB1D10|SINE|Alu	5341	NM_029929	77573	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	2.826	2.648	1.406	3.740	0.655	0.732	4.762	2.670	2.441	3.712	0.675	0.569	4.093	4.952	5.826	4.980	2.675	6.268	nan	0.626	1.244	1.527	nan	0.499	5.685
6572	chr17	34791478	34793825	+	0	NA	Intergenic	MMERVK10C-int|LTR|ERVK	11775	NM_009995	13079	Mm.440407	NM_009995	ENSMUSG00000024365	Cyp21a1	21-OH|21OH|21OHA|21OHB|CYP21OH-A|Cyp21|Cyp21-ps1|Cyp21B|Cyp21a2-ps|Cyp21a2ps|Oh21-1|Oh21-2	cytochrome P450, family 21, subfamily a, polypeptide 1	protein-coding	2.673	1.374	0.819	6.114	3.093	1.736	3.660	3.825	2.108	2.835	0.522	0.792	1.838	5.288	4.528	5.373	2.856	3.185	0.712	0.949	1.062	1.042	0.768	0.411	5.968
5303	chr15	73358884	73360090	+	0	NA	intron (NM_007982, intron 2 of 31)	intron (NM_007982, intron 2 of 31)	63704	NM_007982	14083	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FAK|FRNK|Fadk|mKIAA4203|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	3.875	3.362	2.307	2.753	3.010	2.343	6.536	4.794	3.673	2.515	nan	0.807	7.165	4.881	4.212	4.133	4.913	4.554	0.998	0.580	1.406	nan	0.823	1.101	4.347
14952	chr9	32551179	32556429	+	0	NA	Intergenic	Intergenic	-12352	NM_008026	14247	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	2.158	12.576	4.112	3.654	0.824	0.405	0.765	1.200	2.692	2.301	1.294	1.769	1.331	1.470	2.186	2.408	0.956	3.945	3.864	2.311	1.308	4.634	2.284	1.356	2.404
9432	chr3	87861363	87865524	+	0	NA	intron (NM_033573, intron 4 of 6)	B3|SINE|B2	16688	NM_021309	27371	Mm.86361	NM_021309	ENSMUSG00000028071	Sh2d2a	Lad|Ribp|Tsad	SH2 domain containing 2A	protein-coding	3.412	2.849	1.066	3.788	2.386	2.248	7.147	3.643	3.384	4.618	2.498	1.486	7.289	7.104	5.588	5.828	4.956	4.770	nan	1.174	1.733	1.814	1.758	2.018	6.948
7306	chr18	61929453	61947016	+	0	NA	Intergenic	MERVL_2A-int|LTR|ERVL	-14841	NM_172628	225608	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	6.274	nan	0.483	nan	4.445	2.804	5.003	nan	3.936	4.795	1.289	1.293	nan	7.182	5.174	5.668	3.559	nan	nan	1.208	1.054	nan	0.543	0.557	nan
12313	chr6	72175168	72176281	+	0	NA	Intergenic	RLTR12B|LTR|ERVK	-52527	NR_045165	71265	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	1.488	1.313	0.652	2.197	0.857	0.507	2.397	2.102	2.024	1.631	0.432	0.621	2.858	4.886	5.184	5.782	1.704	4.384	0.638	0.397	0.299	1.716	0.424	0.392	3.590
13016	chr7	26060393	26070072	+	0	NA	intron (NM_007813, intron 1 of 8)	L1_Mus3|LINE|L1	3737	NM_007813	13089	Mm.482696	NM_007813	ENSMUSG00000040583	Cyp2b13	-	cytochrome P450, family 2, subfamily b, polypeptide 13	protein-coding	7.955	8.085	3.019	7.391	4.541	3.156	7.744	8.923	4.103	8.304	7.884	3.330	6.306	9.682	7.735	7.933	5.982	7.609	6.351	5.966	4.009	6.652	6.182	5.179	10.394
3621	chr12	93201303	93203193	+	0	NA	Intergenic	Lx9|LINE|L1	242575	NR_126436	75295	Mm.243878	NR_126436		4930559C10Rik	-	RIKEN cDNA 4930559C10 gene	ncRNA	11.466	0.462	0.401	2.261	2.169	1.044	8.005	3.048	3.520	4.341	0.711	0.318	7.239	5.460	3.944	5.828	8.575	6.019	0.776	1.008	0.584	0.706	1.374	0.723	8.163
10257	chr4	88769718	88775576	+	0	NA	Intergenic	RLTR11A2|LTR|ERVK	-1187	NM_001243155	545646	Mm.380019	NM_001243155	ENSMUSG00000094271	Gm13290	OTTMUSG00000011291	predicted gene 13290	protein-coding	1.892	nan	0.533	0.810	0.806	0.549	3.419	2.723	2.746	1.968	14.471	5.843	3.501	4.095	2.571	2.048	1.575	nan	0.657	nan	0.565	0.604	0.458	0.461	nan
8278	chr2	60121185	60123223	+	0	NA	intron (NM_001001182, intron 1 of 35)	intron (NM_001001182, intron 1 of 35)	3536	NM_001001182	407823	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	9.296	2.512	1.482	6.168	3.605	2.020	4.447	6.735	3.791	6.932	1.865	0.894	6.879	6.176	4.617	7.067	6.347	4.547	1.167	1.475	2.588	1.366	0.828	0.935	8.729
15397	chr9	96279683	96285368	+	0	NA	intron (NM_001184711, intron 2 of 10)	PB1D9|SINE|Alu	23277	NM_001184710	211586	Mm.17977	NM_178667	ENSMUSG00000032411	Tfdp2	1110029I05Rik|A330080J22Rik|DP-3|DP3	transcription factor Dp 2	protein-coding	3.882	0.834	0.633	3.624	2.913	2.079	4.111	3.298	3.274	3.915	10.425	3.284	5.180	6.528	3.130	3.571	3.006	4.402	0.628	0.928	0.724	0.911	0.744	0.689	4.264
14086	chr8	25631048	25632746	+	0	NA	intron (NM_001001735, intron 1 of 9)	B1_Mur1|SINE|Alu	-8680	NM_001081269	234135	Mm.217337	NM_001001735	ENSMUSG00000054823	Whsc1l1	6720429E03|A530023P05|AI528490|NSD3|WHISTLE	Wolf-Hirschhorn syndrome candidate 1-like 1 (human)	protein-coding	1.235	nan	0.475	0.516	0.584	0.110	4.970	1.296	0.938	0.845	4.580	2.792	1.116	3.490	5.247	1.230	0.731	1.065	0.204	0.255	0.055	nan	0.264	0.230	0.666
12446	chr6	90699306	90703389	+	0	NA	intron (NM_001134384, intron 1 of 13)	intron (NM_001134384, intron 1 of 13)	15182	NM_001134383	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	2.736	7.683	2.689	2.712	1.628	1.054	1.700	2.402	1.488	1.741	1.732	0.683	1.587	2.023	1.755	2.758	1.731	nan	nan	1.270	0.794	1.062	0.765	0.363	2.587
11454	chr5	93521295	93523947	+	0	NA	Intergenic	L1VL2|LINE|L1	148842	NM_001164284	381654	Mm.326591	NM_001164284	ENSMUSG00000070686	C87414	-	expressed sequence C87414	protein-coding	6.700	8.067	2.923	7.435	4.305	2.744	5.434	5.239	3.816	7.747	4.670	3.342	3.590	6.166	7.561	6.814	4.260	5.309	6.747	4.367	4.959	7.443	5.123	5.726	10.438
2726	chr11	97529902	97532105	+	0	NA	intron (NM_018873, intron 12 of 19)	intron (NM_018873, intron 12 of 19)	-30663	NM_001289118	100141474	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	1.959	nan	0.502	2.567	1.874	0.740	1.941	0.916	1.293	2.248	0.803	0.199	1.428	4.465	2.930	3.336	1.341	3.292	0.816	nan	0.741	1.468	nan	nan	4.396
12539	chr6	99586457	99588213	+	0	NA	Intergenic	Intergenic	-66342	NM_001347345	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	1.783	1.119	0.211	1.980	0.609	0.265	1.238	0.966	1.823	2.128	0.372	0.362	2.313	3.437	nan	2.928	0.815	1.194	nan	nan	0.626	0.979	0.461	0.108	2.991
11587	chr5	114421638	114428457	+	0	NA	Intergenic	Intergenic	18980	NM_029956	77697	Mm.105182	NM_029956	ENSMUSG00000029575	Mmab	9130222L19Rik|ATR	methylmalonic aciduria (cobalamin deficiency) cblB type homolog (human)	protein-coding	5.716	3.401	1.205	6.518	4.872	2.355	7.547	5.488	4.438	5.291	1.496	1.298	6.273	9.067	6.669	7.669	4.612	7.491	nan	nan	0.923	0.811	nan	0.922	8.790
12934	chr7	16914229	16915862	+	0	NA	TTS (NM_007590)	TTS (NM_007590)	8555	NM_008967	19222	Mm.287572	NM_008967	ENSMUSG00000043017	Ptgir	IP|PGI2	prostaglandin I receptor (IP)	protein-coding	2.569	2.245	1.239	3.151	2.461	2.014	4.157	3.835	3.367	3.001	1.043	0.810	4.568	5.070	3.444	3.908	4.328	4.333	2.061	1.273	0.941	1.138	1.168	1.233	3.445
9442	chr3	88302913	88309008	+	0	NA	intron (NM_009836, intron 6 of 13)	intron (NM_009836, intron 6 of 13)	8825	NM_009836	12462	Mm.256034	NM_009836	ENSMUSG00000001416	Cct3	AL024092|Cctg|Tcp1-rs3|TriC-P5	chaperonin containing Tcp1, subunit 3 (gamma)	protein-coding	6.945	2.194	0.873	7.578	5.310	4.070	7.892	6.721	4.382	6.282	5.433	3.259	6.297	8.967	7.224	7.998	4.629	7.054	nan	2.732	2.691	5.401	4.812	4.116	8.997
7193	chr18	39298763	39301482	+	0	NA	intron (NM_175164, intron 19 of 22)	intron (NM_175164, intron 19 of 22)	187123	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	6.533	2.636	1.031	5.975	3.022	1.435	4.112	7.384	3.670	4.376	1.614	1.068	4.274	4.946	4.371	5.430	2.757	6.078	1.113	1.353	0.902	1.743	0.798	0.579	6.398
441	chr1	92810895	92815142	+	0	NA	Intergenic	Intergenic	-18668	NM_016696	14733	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	8.721	0.950	0.491	3.857	2.476	1.292	9.378	7.314	3.878	4.089	3.765	2.714	6.931	6.609	7.740	10.238	4.932	7.633	1.366	0.970	0.650	nan	0.850	0.729	7.987
8865	chr2	156019887	156025235	+	0	NA	exon (NM_001136556, exon 40 of 45)	exon (NM_001136556, exon 40 of 45)	14436	NM_025516	66366	Mm.141276	NM_025516	ENSMUSG00000005881	Ergic3	2310015B14Rik|AV318804|CGI-54|D2Ucla1|NY-BR-84|Sdbcag84	ERGIC and golgi 3	protein-coding	5.062	5.975	3.880	5.051	4.881	3.783	3.211	5.913	nan	nan	3.082	1.496	nan	5.905	3.644	5.587	5.059	nan	nan	3.721	3.163	3.203	4.042	3.692	nan
6182	chr16	90143284	90145096	+	0	NA	non-coding (NR_033476, exon 1 of 1)	non-coding (NR_033476, exon 1 of 1)	1953	NR_033476	100038709	Mm.484070	NR_033476		Gm10789	ENSMUSG00000074924	predicted gene 10789	ncRNA	1.540	nan	0.199	2.753	0.666	0.452	1.995	2.057	1.136	1.553	3.959	1.450	1.957	1.725	4.745	4.714	2.191	2.702	3.920	1.714	1.265	4.793	1.236	1.361	6.094
7430	chr18	82677678	82690911	+	0	NA	intron (NM_177832, intron 1 of 29)	intron (NM_177832, intron 1 of 29)	8440	NM_177832	329002	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	3.626	nan	0.995	3.325	3.073	1.642	4.450	6.244	3.398	3.279	2.898	3.092	5.399	5.517	4.099	4.876	3.575	5.465	2.072	nan	1.093	2.877	1.727	1.284	5.233
7047	chr18	15559336	15561367	+	0	NA	intron (NM_199055, intron 2 of 3)	Lx|LINE|L1	-149369	NM_001308646	11829	Mm.250786	NM_009700	ENSMUSG00000024411	Aqp4	WCH4	aquaporin 4	protein-coding	2.568	1.938	1.421	0.482	0.327	0.245	0.986	2.193	0.782	0.944	5.468	7.672	1.651	0.382	0.532	1.030	3.385	0.937	2.164	1.718	1.047	0.516	2.107	1.322	1.074
4041	chr13	43571642	43577510	+	0	NA	Intergenic	Intergenic	-14385	NM_001081059	76137	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	7.834	10.010	5.074	9.100	8.212	5.671	6.086	8.250	5.915	13.985	4.978	3.545	6.778	9.888	7.023	7.759	5.079	nan	5.077	nan	2.841	5.021	3.863	5.043	nan
672	chr1	137090792	137096924	+	0	NA	Intergenic	L1Md_A|LINE|L1	-133410	NM_030676	26424	Mm.16794	NM_030676	ENSMUSG00000026398	Nr5a2	AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B	nuclear receptor subfamily 5, group A, member 2	protein-coding	3.801	0.890	0.568	nan	1.465	1.374	2.631	4.583	2.632	2.297	2.868	4.039	4.171	nan	3.135	nan	3.349	2.559	8.694	5.265	6.013	10.297	7.266	7.851	nan
8575	chr2	119363895	119365184	+	0	NA	Intergenic	PB1D7|SINE|Alu	13297	NM_026929	69065	Mm.35083	NM_026929	ENSMUSG00000027313	Chac1	1810008K03Rik	ChaC, cation transport regulator 1	protein-coding	3.409	0.641	0.593	1.717	1.094	1.003	2.296	1.765	2.038	2.779	0.520	0.210	2.500	4.521	2.963	nan	2.337	3.714	0.528	0.404	0.664	0.527	0.380	0.239	3.135
10485	chr4	122720710	122735143	+	0	NA	Intergenic	L2|LINE|L2	38667	NM_023865	77432	Mm.491436	NM_023865	ENSMUSG00000023263	9530002B09Rik	Aump|Vpp1|Vppl	RIKEN cDNA 9530002B09 gene	protein-coding	3.600	1.765	1.159	3.251	2.357	1.687	3.016	5.735	3.161	3.074	3.955	1.925	4.511	5.523	4.164	3.623	3.318	4.199	3.187	10.017	8.650	7.439	1.778	1.578	3.921
7644	chr19	23207040	23219876	+	0	NA	intron (NM_153808, intron 21 of 23)	intron (NM_153808, intron 21 of 23)	59141	NM_001252685	226026	Mm.23267	NM_153808	ENSMUSG00000024943	Smc5	MLZ-453|SMC-5|Smc5l1|mKIAA0594|mSMC5	structural maintenance of chromosomes 5	protein-coding	9.858	5.768	1.732	nan	7.159	4.586	8.489	12.289	7.217	11.580	nan	3.878	7.802	13.866	9.414	10.601	9.630	10.954	nan	1.469	1.801	3.027	nan	3.105	14.494
15382	chr9	90127439	90128829	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	-13314	NM_024431	21761	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	4.852	2.002	0.915	3.919	1.400	1.159	2.345	4.355	4.123	5.002	2.407	1.360	2.745	4.631	4.036	6.075	3.850	4.749	0.949	0.671	1.060	2.812	0.542	0.253	6.349
11744	chr5	128089533	128098304	+	0	NA	intron (NM_172885, intron 3 of 8)	MER115|DNA|hAT-Tip100	339159	NM_172885	243274	Mm.447698	NM_172885	ENSMUSG00000034310	Tmem132d	C630028F04Rik	transmembrane protein 132D	protein-coding	6.653	9.146	4.353	5.872	5.355	3.471	4.227	4.278	4.742	7.014	3.737	1.759	3.997	6.567	nan	5.812	nan	nan	nan	2.608	2.990	3.682	nan	2.454	nan
4257	chr13	75961475	75963636	+	0	NA	Intergenic	RMER1A|Other|Other	-5184	NM_029343	75571	Mm.443291	NM_029343	ENSMUSG00000021590	Spata9	1700030K01Rik|4930599C08Rik|A930023H06Rik	spermatogenesis associated 9	protein-coding	6.981	5.973	2.626	3.916	5.909	1.685	1.781	3.850	2.642	3.230	5.089	3.010	2.242	5.099	3.078	2.949	1.922	4.572	0.711	1.410	0.497	1.011	0.807	0.404	3.236
15045	chr9	47337529	47339985	+	0	NA	Intergenic	Intergenic	-191413	NM_001310841	54725	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	4.985	1.391	0.210	7.274	1.513	1.461	2.156	1.226	3.125	9.760	4.302	2.195	2.700	4.166	nan	7.149	2.016	8.686	4.663	1.376	2.588	6.757	2.877	4.890	17.097
11239	chr5	53629892	53637558	+	0	NA	intron (NM_001080928, intron 2 of 10)	intron (NM_001080928, intron 2 of 10)	43239	NM_001080927	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	1.918	0.632	0.247	1.082	1.050	0.656	1.712	2.056	1.629	1.401	2.039	1.361	1.963	2.524	2.254	nan	1.751	1.728	4.133	1.975	1.202	5.751	2.574	1.812	1.959
3806	chr12	120677321	120680362	+	0	NA	Intergenic	Intergenic	732879	NM_001160385	217951	Mm.387395	NM_001160385	ENSMUSG00000048004	Tmem196	Gm528	transmembrane protein 196	protein-coding	7.327	0.696	0.255	2.370	3.281	1.645	4.005	1.647	3.165	3.197	2.791	0.952	4.600	3.674	3.055	3.923	3.344	3.216	0.743	1.037	0.376	0.868	0.556	0.513	6.256
3689	chr12	106104889	106106663	+	0	NA	Intergenic	Intergenic	95513	NM_001029843	22367	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	7.647	0.672	0.267	nan	1.035	0.419	2.843	6.006	nan	nan	1.326	0.712	4.502	5.327	2.731	6.388	6.280	3.203	1.187	1.054	0.416	2.871	1.380	0.856	6.942
5858	chr16	19239584	19241746	+	0	NA	Intergenic	Intergenic	46076	NM_146451	258443	Mm.377506	NM_146451	ENSMUSG00000050742	Olfr164	MOR279-2	olfactory receptor 164	protein-coding	0.450	10.522	5.577	1.278	0.181	0.114	0.197	0.441	0.546	nan	0.258	0.331	0.227	0.432	0.495	nan	0.752	0.835	0.721	0.744	0.283	0.289	0.201	0.187	0.328
15380	chr9	90007411	90010043	+	0	NA	intron (NM_011245, intron 20 of 26)	intron (NM_011245, intron 20 of 26)	-45540	NM_007801	13036	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	10.060	12.488	5.613	8.420	5.875	4.620	8.809	7.874	4.199	7.975	4.900	3.049	6.339	9.373	7.467	8.104	6.661	6.878	5.911	5.118	5.154	5.782	5.136	5.060	11.670
13339	chr7	83013791	83016524	+	0	NA	Intergenic	L1MB3|LINE|L1	-43766	NR_045855	71285	Mm.76818	NR_045855	ENSMUSG00000109106	4933430H16Rik	-	RIKEN cDNA 4933430H16 gene	ncRNA	1.283	1.071	0.434	1.665	0.687	0.458	0.719	1.385	nan	1.253	0.816	0.518	1.189	1.128	1.197	2.379	1.048	2.290	0.762	0.521	0.425	nan	0.608	0.560	4.661
13206	chr7	53935448	53941851	+	0	NA	Intergenic	RLTR12B|LTR|ERVK	-46760	NR_105746	102466619		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	nan	1.813	1.112	0.227	0.238	0.185	0.431	0.892	0.321	0.288	0.360	0.218	0.233	0.286	0.401	nan	0.395	0.403	3.377	2.161	1.081	5.157	4.001	2.855	0.476
5391	chr15	77764459	77765886	+	0	NA	intron (NM_022410, intron 35 of 40)	intron (NM_022410, intron 35 of 40)	-9943	NM_001081970	239552	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	nan	nan	0.273	nan	0.719	0.470	nan	5.162	1.266	nan	nan	0.189	2.529	3.748	1.678	1.874	nan	1.632	0.994	0.784	0.602	5.552	0.612	0.528	1.552
751	chr1	154966305	154995891	+	0	NA	Intergenic	Intergenic	118538	NM_010500	15939	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	6.322	0.895	0.488	3.903	4.714	2.744	7.444	6.591	nan	4.714	3.032	2.684	8.031	9.157	7.663	nan	5.198	8.251	nan	0.640	0.621	1.251	nan	0.616	6.749
1746	chr10	114819279	114823625	+	0	NA	Intergenic	Intergenic	-20082	NM_146241	237553	Mm.445550	NM_146241	ENSMUSG00000050663	Trhde	9330155P21Rik	TRH-degrading enzyme	protein-coding	10.338	12.016	4.503	11.412	6.852	4.318	6.859	7.416	6.935	12.000	6.465	4.708	6.706	8.873	9.099	9.727	7.593	9.479	5.024	3.214	3.593	5.325	3.904	3.542	12.431
11853	chr5	138068745	138075805	+	0	NA	Intergenic	MERVL-int|LTR|ERVL	-12809	NM_133906	74570	Mm.213114	NM_029869	ENSMUSG00000029729	Zkscan1	5930429A01Rik|9130423L19Rik|9230118B16Rik|AI646829|AI788588|C87323|KOX18|PHZ-37|ZNF139	zinc finger with KRAB and SCAN domains 1	protein-coding	8.908	9.916	3.508	8.534	5.535	2.880	7.330	7.904	5.023	7.715	7.615	3.838	7.718	11.645	7.590	8.718	6.117	8.372	2.593	2.568	1.752	2.245	nan	2.137	10.463
8580	chr2	119566127	119568834	+	0	NA	intron (NM_019769, intron 3 of 6)	B1_Mus1|SINE|Alu	19773	NM_019769	56398	Mm.214765	NM_019769	ENSMUSG00000014077	Chp1	1500003O03Rik|AA960066|AI046351|Cahp|Chp|Sid470p|p24|vac	calcineurin-like EF hand protein 1	protein-coding	4.598	7.587	2.856	4.720	1.754	1.047	3.756	6.348	2.639	5.288	1.787	1.254	3.938	4.546	4.553	7.490	3.872	4.275	1.617	0.948	0.703	2.001	0.903	1.518	8.430
7224	chr18	47156372	47160221	+	0	NA	Intergenic	Intergenic	199420	NM_178377	69456	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2	COMM domain containing 10	protein-coding	0.914	0.645	0.598	0.670	4.945	3.281	0.710	0.889	0.622	0.514	0.397	0.264	0.244	0.508	0.175	0.433	0.952	nan	0.648	1.149	0.890	0.396	1.198	0.583	0.382
4551	chr14	26358542	26359985	+	0	NA	intron (NR_038005, intron 1 of 7)	intron (NR_038005, intron 1 of 7)	1716	NR_038005	71106	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	2.330	1.787	1.846	2.888	1.709	1.318	2.046	5.348	1.650	2.378	1.124	0.679	2.282	3.571	2.294	2.851	nan	2.441	1.190	1.297	0.943	nan	0.823	1.083	5.031
4300	chr13	96548980	96550378	+	0	NA	intron (NM_023420, intron 2 of 17)	intron (NM_023420, intron 2 of 17)	6944	NM_023420	68018	Mm.24125	NM_023420	ENSMUSG00000021669	Col4a3bp	2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	protein-coding	1.164	1.060	0.311	0.908	0.506	0.173	1.408	2.896	1.401	1.420	1.731	0.960	2.021	3.197	1.813	2.501	nan	1.377	0.756	0.277	0.175	0.799	0.231	0.144	0.551
3356	chr12	57537268	57542615	+	0	NA	TTS (NM_008259)	TTS (NM_008259)	6180	NM_008259	15375	Mm.4578	NM_008259	ENSMUSG00000035451	Foxa1	Hnf-3a|Hnf3a|Tcf-3a|Tcf3a	forkhead box A1	protein-coding	5.582	nan	1.062	4.125	2.500	1.694	5.535	2.290	4.794	6.025	0.721	0.751	9.383	8.039	5.925	8.132	6.537	8.683	2.436	0.716	0.541	2.168	1.227	0.586	5.885
13103	chr7	31381065	31389462	+	0	NA	Intergenic	L1Md_T|LINE|L1	9671	NM_001256073	384585	Mm.305164	NM_001256073	ENSMUSG00000095257	Scgb1b3	Abpa21|Abpa3|EG384585|Gm5325	secretoglobin, family 1B, member 3	protein-coding	7.241	1.284	0.816	5.743	5.536	4.818	9.177	9.743	6.752	7.319	2.989	2.758	10.710	12.525	8.359	8.234	8.498	8.725	2.294	1.603	1.294	1.622	1.970	1.549	8.678
2275	chr11	60130120	60137855	+	0	NA	intron (NM_009021, intron 1 of 5)	intron (NM_009021, intron 1 of 5)	-6095	NM_001037764	19377	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	3.146	0.681	0.566	3.181	2.702	1.884	4.027	3.311	3.214	3.357	1.993	1.358	4.657	4.130	4.661	5.571	4.230	5.019	3.816	2.392	1.495	3.457	2.388	1.881	2.995
12312	chr6	72046610	72056478	+	0	NA	Intergenic	Intergenic	-9016	NR_046180	330350	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	3.337	1.940	0.725	3.838	3.238	2.061	6.978	4.962	4.833	5.841	0.902	1.064	7.839	9.143	6.498	9.645	6.917	6.694	2.010	1.259	0.947	2.086	1.391	1.269	5.915
5532	chr15	85525512	85540467	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	-29762	NM_001256072	328577	Mm.212960	NM_001256072	ENSMUSG00000096607	7530416G11Rik	-	RIKEN cDNA 7530416G11 gene	protein-coding	nan	1.540	0.499	nan	2.007	0.774	nan	nan	nan	2.763	2.322	1.275	4.387	4.634	nan	nan	nan	nan	nan	1.800	1.252	nan	1.719	1.481	nan
10663	chr4	133673781	133678791	+	0	NA	Intergenic	Intergenic	-3639	NM_001145956	230801	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	3.550	13.810	5.306	3.512	1.643	0.998	1.969	3.453	nan	3.074	2.960	1.187	2.235	2.456	3.271	3.468	1.810	3.094	1.922	2.340	2.192	1.933	nan	1.595	3.303
10062	chr4	47156933	47166919	+	0	NA	Intergenic	Intergenic	-46086	NM_009928	12819	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	5.032	nan	0.409	0.883	1.597	0.768	4.235	7.024	3.862	4.195	2.225	2.103	4.278	4.673	5.321	3.079	3.199	nan	1.515	1.014	0.536	nan	1.204	0.730	5.619
9249	chr3	38030793	38031758	+	0	NA	Intergenic	L1_Mur3|LINE|L1	132462	NR_040559	626410	Mm.389417	NR_040559	ENSMUSG00000106461	Gm20755	-	predicted gene, 20755	ncRNA	2.184	0.748	0.469	1.677	0.697	0.407	2.248	2.059	nan	2.213	2.104	0.923	1.630	3.637	2.246	2.006	1.155	3.528	nan	0.596	0.237	1.090	1.160	0.728	2.001
907	chr1	178755760	178758587	+	0	NA	intron (NM_001161665, intron 4 of 14)	intron (NM_001161665, intron 4 of 14)	228048	NM_001161665	269152	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	6.471	1.831	1.532	3.581	2.704	0.847	2.399	5.489	3.743	4.288	2.459	2.085	4.553	5.699	5.484	6.903	4.142	4.903	0.973	0.593	0.443	0.955	0.406	0.159	3.758
15181	chr9	63562466	63571603	+	0	NA	intron (NM_001311098, intron 5 of 21)	intron (NM_001311098, intron 5 of 21)	35459	NM_030068	78250	Mm.444612	NM_030068	ENSMUSG00000037801	Iqch	4921504K03Rik	IQ motif containing H	protein-coding	5.005	4.270	1.358	4.225	4.729	2.474	5.667	8.054	5.195	6.898	5.243	4.268	5.756	8.260	6.122	7.158	3.262	6.081	nan	1.400	1.027	2.922	1.032	0.829	7.459
10060	chr4	46654294	46657907	+	0	NA	Intergenic	Intergenic	-5901	NM_198664	381605	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	9.638	nan	0.671	4.753	6.357	3.563	4.393	8.422	6.440	7.288	4.595	2.731	4.699	8.260	7.694	9.399	4.344	7.919	0.895	1.045	0.961	nan	0.447	0.516	8.339
5925	chr16	24162942	24175765	+	0	NA	Intergenic	B4A|SINE|B4	-180741	NM_009744	12053	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	1.398	9.321	5.014	1.296	0.801	0.396	1.058	1.870	1.223	1.245	1.383	1.402	nan	1.390	1.666	nan	1.235	2.012	0.919	0.607	0.415	0.950	nan	0.622	1.873
7257	chr18	56565588	56568507	+	0	NA	intron (NM_001162989, intron 1 of 4)	intron (NM_001162989, intron 1 of 4)	4478	NM_001162989	56698	Mm.214569	NM_019996	ENSMUSG00000008301	Phax	2810055C14Rik|4933427L19Rik|AU018701|AU018854|D18Ertd65e|Rnuxa|p55	phosphorylated adaptor for RNA export	protein-coding	7.227	nan	0.658	nan	2.313	0.454	5.412	6.463	1.964	2.725	1.218	0.889	6.693	7.927	5.034	4.181	6.357	4.813	nan	1.073	0.959	nan	0.814	0.736	5.634
1868	chr10	128002577	128004284	+	0	NA	intron (NM_013786, intron 1 of 5)	MERVL_2A-int|LTR|ERVL	4078	NM_013786	27400	Mm.26719	NM_013786	ENSMUSG00000025396	Hsd17b6	17betaHSD9|Hsd17b9|Rdh8	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding	10.957	14.753	3.693	10.785	7.407	6.668	9.016	8.110	6.806	10.357	6.727	4.719	7.096	9.969	8.420	9.861	8.839	7.467	4.234	4.095	6.589	5.967	nan	6.429	13.815
10869	chr4	144856947	144869490	+	0	NA	Intergenic	Intergenic	-29609	NM_001172424	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	4.875	nan	1.292	3.625	3.993	2.626	3.294	2.080	2.912	3.069	1.697	1.281	3.134	5.197	4.379	3.545	1.554	4.328	1.081	0.988	0.850	1.227	0.967	0.807	5.060
10505	chr4	124506164	124507772	+	0	NA	Intergenic	Intergenic	-21009	NR_040774	78460	Mm.452060	NR_040774		1700057H15Rik	-	RIKEN cDNA 1700057H15 gene	ncRNA	2.849	1.442	0.732	1.719	3.015	2.493	3.991	1.929	2.565	3.146	1.597	1.382	3.846	4.079	4.917	4.688	2.945	3.984	1.039	0.846	1.445	0.968	0.868	0.548	5.336
3480	chr12	80230946	80237662	+	0	NA	intron (NM_001346669, intron 1 of 20)	RMER1A|Other|Other	26067	NM_134156	109711	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	7.107	0.888	0.590	2.072	3.341	1.897	4.960	5.786	2.340	2.764	2.099	0.763	5.315	6.337	5.167	6.612	6.499	4.498	2.008	1.422	0.931	1.178	1.339	0.643	8.076
6925	chr17	84928023	84934748	+	0	NA	intron (NR_027929, intron 2 of 3)	MER67C|LTR|ERV1	-25356	NM_001159497	19043	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	4.125	0.685	0.591	2.711	2.910	2.194	5.530	1.151	4.502	4.581	0.872	0.782	4.723	5.704	4.626	6.099	5.036	5.935	1.856	1.895	1.264	1.866	2.689	1.785	4.067
3154	chr12	3866020	3873582	+	0	NA	intron (NM_007872, intron 4 of 22)	ID_B1|SINE|B4	-7557	NR_045884	100038522	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	ENSMUSG00000073242|Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	4.917	7.666	2.692	3.642	2.125	1.891	2.242	2.244	2.496	3.297	0.898	0.737	4.055	3.718	3.586	4.107	3.230	3.478	1.675	1.469	1.216	2.099	0.716	0.730	7.239
13885	chr7	148349366	148351445	+	0	NA	Intergenic	Intergenic	3035570	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	3.133	nan	0.362	3.884	2.527	0.521	3.644	7.736	2.269	2.776	3.056	1.796	5.481	5.978	5.570	5.132	2.091	5.005	0.959	0.414	0.118	1.066	nan	0.185	3.303
5812	chr16	13588401	13590160	+	0	NA	intron (NM_028761, intron 21 of 23)	intron (NM_028761, intron 21 of 23)	-68861	NR_037997	70100	Mm.158330	NR_037997	ENSMUSG00000099411	2310015D24Rik	-	RIKEN cDNA 2310015D24 gene	ncRNA	6.898	1.834	1.445	4.553	2.014	1.576	8.773	8.025	4.125	3.749	1.699	2.871	8.176	7.536	4.825	7.016	4.335	7.302	2.984	2.462	2.775	7.084	2.616	2.636	5.058
15698	chrX	21291203	21293250	+	0	NA	Intergenic	RLTR14-int|LTR|ERV1	42501	NR_033482	629024	Mm.391230	NR_033482	ENSMUSG00000087586	Gm6938	EG629024	predicted gene 6938	ncRNA	2.735	0.287	0.129	3.327	2.826	0.813	1.925	2.104	2.916	2.860	1.732	1.323	2.505	3.078	3.069	nan	2.620	4.458	0.615	0.972	0.644	1.475	0.971	0.303	3.652
12006	chr5	151894474	151898012	+	0	NA	Intergenic	Intergenic	-245035	NM_027009	69263	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	3.612	0.613	0.654	nan	4.065	2.665	3.069	1.433	nan	2.341	1.197	0.906	1.709	4.231	2.042	nan	1.943	3.921	1.052	0.746	0.909	0.658	0.972	0.882	nan
10379	chr4	109347620	109351072	+	0	NA	intron (NM_001159964, intron 1 of 12)	MERVL-int|LTR|ERVL	6290	NM_001159964	13858	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	7.968	5.066	1.942	6.177	7.289	3.994	5.016	nan	4.123	8.445	5.122	3.597	5.181	7.573	4.846	5.984	4.868	6.330	7.480	7.871	4.802	6.805	7.852	5.250	7.719
8914	chr2	158904987	158908083	+	0	NA	Intergenic	Intergenic	111728	NM_001291144	71715	Mm.315652	NM_145742	ENSMUSG00000027655	Dhx35	1200009D07Rik|Ddx35	DEAH (Asp-Glu-Ala-His) box polypeptide 35	protein-coding	3.336	0.476	0.266	3.587	2.074	1.353	0.438	0.896	nan	5.042	0.685	0.457	2.029	5.246	2.518	2.282	0.784	5.008	nan	0.909	0.718	0.682	0.405	0.481	4.917
8725	chr2	140600394	140602163	+	0	NA	intron (NM_001013802, intron 3 of 18)	intron (NM_001013802, intron 3 of 18)	70198	NM_001172160	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	2.696	0.526	0.357	2.503	2.275	1.134	2.450	2.079	2.350	2.925	1.115	0.994	2.554	2.513	3.147	5.521	3.766	4.609	0.609	0.574	0.321	0.650	0.850	0.467	3.476
13370	chr7	87350031	87355252	+	0	NA	intron (NM_015760, intron 12 of 17)	intron (NM_015760, intron 12 of 17)	105992	NM_001285833	50490	Mm.31748	NM_015760	ENSMUSG00000030562	Nox4	AI648021	NADPH oxidase 4	protein-coding	4.656	7.297	1.548	5.315	3.789	1.567	5.992	9.630	3.733	5.074	7.301	4.308	6.458	7.920	6.659	7.588	nan	5.317	3.171	2.341	1.379	nan	1.213	0.877	7.860
664	chr1	136666457	136671160	+	0	NA	Intergenic	PB1D11|SINE|Alu	-14588	NR_045324	100503460	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	6.563	1.845	0.653	4.845	2.555	1.357	5.046	5.463	4.116	5.059	2.739	3.556	6.818	5.263	4.648	6.926	3.726	5.208	1.297	0.763	0.585	1.377	0.644	0.549	nan
5639	chr15	99221677	99241170	+	0	NA	intron (NM_010601, intron 7 of 14)	intron (NM_010601, intron 7 of 14)	6447	NM_010601	16512	Mm.374793	NM_010601	ENSMUSG00000037579	Kcnh3	AU019351|C030044P22Rik|Elk2|Kv12.2|Melk2	potassium voltage-gated channel, subfamily H (eag-related), member 3	protein-coding	7.001	2.929	1.423	4.849	3.845	2.507	9.161	12.162	3.910	4.828	3.045	2.343	9.575	8.760	9.091	nan	7.443	6.843	1.933	1.610	1.540	2.703	1.173	0.996	6.693
1790	chr10	119549055	119551036	+	0	NA	intron (NM_133442, intron 1 of 21)	L1MCb|LINE|L1	96011	NM_001277293	74053	Mm.196692	NM_028736	ENSMUSG00000034813	Grip1	4931400F03Rik|GRIP|eb	glutamate receptor interacting protein 1	protein-coding	6.303	7.399	5.599	4.307	4.349	3.263	4.235	5.387	2.769	4.059	3.238	2.443	3.519	5.121	3.483	3.702	3.994	3.412	3.905	4.405	6.321	4.163	6.022	5.690	4.263
2264	chr11	59915697	59932078	+	0	NA	Intergenic	L1Md_T|LINE|L1	2388	NR_130986	69854	Mm.57859	NR_130986	ENSMUSG00000085551	1810063I02Rik	-	RIKEN cDNA 1810063I02 gene	ncRNA	6.734	5.502	1.922	6.345	3.717	2.557	7.051	6.498	4.431	7.448	5.534	3.124	5.983	7.233	7.300	8.477	5.960	6.759	nan	2.733	2.742	4.943	3.659	3.420	nan
12715	chr6	127275331	127286860	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	26872	NR_073373	232386	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	4.120	nan	0.972	2.641	2.199	1.189	5.717	3.362	3.740	3.558	3.472	3.685	4.343	5.059	5.761	nan	4.156	5.267	0.725	0.643	0.468	0.510	0.482	0.448	6.491
8738	chr2	144415136	144416404	+	0	NA	Intergenic	(TGGG)n|Simple_repeat|Simple_repeat	-43510	NR_033459	668917	Mm.152805	NR_033459	ENSMUSG00000083674	Zfp133-ps	OTTMUSG00000003825|Zfp133	zinc finger protein 133, pseudogene	pseudo	1.817	0.347	0.243	0.770	1.877	0.719	2.028	5.206	1.708	1.601	0.950	0.377	1.718	3.388	2.802	1.808	1.811	3.186	2.986	0.535	0.145	0.672	1.822	0.853	1.129
13965	chr8	3260008	3261436	+	0	NA	intron (NM_010568, intron 1 of 20)	intron (NM_010568, intron 1 of 20)	18895	NM_010568	16337	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	3.711	0.838	0.435	4.734	3.860	1.718	2.392	5.865	2.829	3.081	2.185	1.403	2.483	3.644	3.188	5.763	2.712	4.993	1.744	0.856	0.849	3.868	0.653	0.166	6.142
12579	chr6	112979719	112986335	+	0	NA	Intergenic	B4A|SINE|B4	-35761	NM_080448	259302	Mm.236401	NM_080448	ENSMUSG00000030257	Srgap3	AI452337|Arhgap14|D130026O08Rik|Gbi|MEGAP|WRP|mKIAA0411	SLIT-ROBO Rho GTPase activating protein 3	protein-coding	5.836	0.762	0.669	3.207	5.479	4.241	4.505	8.724	5.697	6.971	7.046	5.602	5.733	8.526	5.549	4.269	3.724	7.242	nan	0.745	0.809	0.603	0.822	0.753	nan
6920	chr17	84702171	84707670	+	0	NA	TTS (NM_028233)	TTS (NM_028233)	21799	NM_026180	67470	Mm.26581	NM_026180	ENSMUSG00000024254	Abcg8	1300003C16Rik|AI114946|sterolin-2	ATP-binding cassette, sub-family G (WHITE), member 8	protein-coding	4.222	3.323	0.909	2.522	1.468	0.828	2.483	2.262	nan	3.302	1.472	0.761	2.846	3.704	3.908	4.808	4.726	4.109	0.729	0.579	0.406	0.670	0.459	0.386	6.910
1420	chr10	74551449	74557105	+	0	NA	intron (NM_001142740, intron 26 of 31)	intron (NM_001142740, intron 26 of 31)	-412954	NM_010311	14687	Mm.32595	NM_010311	ENSMUSG00000040009	Gnaz	AI847979|Gz	guanine nucleotide binding protein, alpha z subunit	protein-coding	2.070	1.366	0.894	nan	2.550	1.221	1.566	1.662	1.769	1.701	1.497	0.862	1.014	1.741	nan	1.701	1.276	2.084	nan	1.388	1.494	4.694	1.249	1.195	1.772
15024	chr9	44609605	44612185	+	0	NA	intron (NM_007841, intron 2 of 13)	B3|SINE|B2	6003	NM_181324	13209	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	3.779	0.822	0.435	2.722	1.667	0.737	3.529	6.180	3.015	3.986	2.933	1.340	5.032	5.711	4.071	4.302	2.851	4.256	1.019	0.672	0.595	nan	0.606	0.699	4.622
11405	chr5	89875825	89877744	+	0	NA	intron (NM_001081401, intron 2 of 21)	intron (NM_001081401, intron 2 of 21)	6550	NM_177872	330119	Mm.133062	NM_177872	ENSMUSG00000043635	Adamts3	1100001H14Rik|6330442E02Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	protein-coding	3.232	0.465	0.416	1.886	1.739	1.075	3.199	3.327	2.414	2.932	0.479	0.999	3.257	5.195	3.669	3.864	3.720	2.935	0.477	0.545	0.565	0.378	0.372	0.446	1.508
3437	chr12	75553025	75555591	+	0	NA	intron (NM_012024, intron 2 of 13)	B4|SINE|B4	41892	NM_012024	26932	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	0.463	0.537	0.257	0.182	0.110	0.049	0.496	0.178	0.114	0.272	0.245	0.198	0.058	nan	0.170	nan	0.231	0.321	4.681	3.321	2.828	6.231	4.220	2.287	0.465
2502	chr11	77795439	77799348	+	0	NA	intron (NM_011586, intron 1 of 39)	B3|SINE|B2	-3905	NM_001291214	360013	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	nan	17.077	5.677	11.153	5.871	3.528	8.981	9.020	6.831	12.911	9.816	5.692	7.526	12.350	9.561	11.394	8.464	9.313	5.585	3.965	nan	6.723	5.099	5.707	15.795
126	chr1	39472433	39476609	+	0	NA	intron (NM_018775, intron 1 of 19)	intron (NM_018775, intron 1 of 19)	4226	NM_018775	54610	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	6.256	2.314	1.058	6.172	5.765	4.428	4.378	4.660	5.998	8.497	7.689	3.947	4.336	5.116	3.959	5.815	4.536	7.295	1.713	0.852	0.778	1.135	1.222	0.921	4.246
9095	chr2	179774930	179778047	+	0	NA	intron (NM_001316723, intron 2 of 5)	intron (NM_001316723, intron 2 of 5)	200158	NM_001081092	228980	Mm.235542	NM_001081092	ENSMUSG00000039117	Taf4	135kDa|AI450312|TAFII130|TAFII135|Taf2c1|Taf4a	TATA-box binding protein associated factor 4	protein-coding	7.598	10.661	3.134	8.014	3.541	3.093	5.929	9.333	3.793	9.887	5.038	3.056	6.550	7.746	7.457	10.820	5.897	7.131	4.955	1.834	3.757	5.953	2.195	4.828	15.724
6314	chr17	7012785	7014451	+	0	NA	Intergenic	MTEa|LTR|ERVL-MaLR	-11925	NM_001033442	381059	Mm.490353	NM_001033442	ENSMUSG00000095720	Gm1604b	ENSMUSG00000073470|Gm1604	predicted gene 1604b	protein-coding	2.696	0.756	0.279	5.141	4.859	2.622	3.634	6.415	4.019	4.061	5.234	4.516	4.869	6.233	7.457	7.889	2.505	5.606	2.590	0.631	0.736	2.888	1.430	1.131	6.384
11934	chr5	145093471	145100481	+	0	NA	intron (NM_019767, intron 4 of 9)	B1_Mm|SINE|Alu	13107	NM_019767	56443	Mm.371610	NM_019767	ENSMUSG00000029621	Arpc1a	0610010H08Rik|1110030K07Rik|41kDa|AA407347|Sid32|Sid329	actin related protein 2/3 complex, subunit 1A	protein-coding	3.631	0.624	0.588	nan	4.459	3.261	3.780	5.282	3.870	5.414	1.778	1.876	4.621	6.402	4.860	5.407	4.382	5.075	2.160	1.263	0.996	1.271	2.213	1.988	nan
9614	chr3	101605319	101609856	+	0	NA	Intergenic	Intergenic	-2880	NM_144900	11928	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	1.767	0.974	0.539	2.370	1.797	1.264	4.268	2.783	1.549	2.026	nan	1.045	2.199	3.095	3.291	nan	2.357	2.605	4.657	1.963	1.380	6.022	4.713	3.025	3.325
2875	chr11	105419172	105420741	+	0	NA	intron (NM_172568, intron 4 of 11)	L2|LINE|L2	36779	NM_172568	632687	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|OTTMUSG00000002847|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	2.351	0.726	0.489	nan	1.175	0.554	1.983	2.493	2.322	3.570	0.536	0.765	4.421	3.338	2.368	3.606	3.877	nan	1.077	0.497	0.275	nan	0.716	0.561	2.137
5819	chr16	14938220	14943278	+	0	NA	Intergenic	Intergenic	34103	NM_025769	66793	Mm.100270	NM_025769	ENSMUSG00000068617	Efcab1	4930449A16Rik|5430404L10Rik	EF hand calcium binding domain 1	protein-coding	4.309	0.813	0.512	2.735	3.100	1.671	3.071	6.473	3.937	3.361	8.461	3.580	3.687	5.015	2.854	nan	2.381	4.096	1.030	0.820	0.796	1.195	1.048	0.911	1.722
1533	chr10	81089680	81090782	+	0	NA	intron (NM_145365, intron 5 of 11)	intron (NM_145365, intron 5 of 11)	8641	NM_145365	208677	Mm.294693	NM_145365	ENSMUSG00000035041	Creb3l3	BC010786|CREB-H|D10Bur1e	cAMP responsive element binding protein 3-like 3	protein-coding	15.280	17.906	6.239	13.162	9.461	5.250	11.115	10.793	7.103	10.592	10.402	5.079	9.167	12.533	12.444	11.725	10.136	10.906	7.608	6.998	5.970	9.088	5.831	5.015	18.581
7979	chr2	14150644	14152057	+	0	NA	Intergenic	Intergenic	-23174	NM_001081310	625286	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding	5.369	0.718	0.367	2.401	1.031	0.332	1.138	0.981	2.157	2.551	0.904	0.564	1.455	3.401	1.925	2.687	0.988	2.676	0.492	0.880	0.610	0.542	0.615	0.469	3.505
651	chr1	136075925	136099493	+	0	NA	intron (NM_001081023, intron 14 of 43)	MER5A1|DNA|hAT-Charlie	34808	NM_014193	12292	Mm.4418	NM_014193	ENSMUSG00000026407	Cacna1s	AW493108|Cav1.1|Cchl1a3|fmd|mdg|sj	calcium channel, voltage-dependent, L type, alpha 1S subunit	protein-coding	4.515	2.274	0.787	nan	2.390	1.337	4.982	3.982	2.711	3.495	0.550	0.760	3.778	nan	4.174	nan	4.484	4.508	0.643	0.659	0.504	0.819	0.418	0.396	nan
176	chr1	52904700	52906312	+	0	NA	intron (NM_146108, intron 11 of 13)	intron (NM_146108, intron 11 of 13)	47334	NM_144953	67080	Mm.236287	NM_144953	ENSMUSG00000043629	1700019D03Rik	2410136C24Rik|AA410151|smAKAP	RIKEN cDNA 1700019D03 gene	protein-coding	3.867	0.726	1.213	2.698	3.562	2.879	1.824	1.821	2.570	3.274	1.070	1.762	4.003	3.158	2.811	4.919	3.229	3.266	1.185	0.830	1.108	0.665	1.124	0.895	2.229
4660	chr14	51707377	51717374	+	0	NA	intron (NM_001034102, intron 4 of 4)	intron (NM_001034102, intron 4 of 4)	4757	NM_001034102	545047	Mm.425915	NM_001034102	ENSMUSG00000068506	Gm5800	EG545047	predicted gene 5800	protein-coding	6.208	5.810	2.277	4.941	3.559	1.859	4.258	5.420	4.810	5.855	3.422	1.902	4.693	7.871	5.974	7.093	4.062	4.845	1.457	1.519	0.943	1.794	1.905	1.648	7.365
15857	chrX	159601926	159603469	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-24575	NM_001135727	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	1.755	0.346	0.085	1.934	1.192	0.579	1.440	1.468	2.437	2.180	0.530	0.326	2.474	3.099	3.059	3.212	1.390	2.769	0.264	0.216	0.031	0.443	0.093	0.052	2.287
15358	chr9	83467804	83470307	+	0	NA	Intergenic	ORR1A4|LTR|ERVL-MaLR	-27928	NM_029434	75782	Mm.199698	NM_027448	ENSMUSG00000032258	Lca5	4930431B11Rik|5730406O13Rik|AV274874|ORF64	Leber congenital amaurosis 5 (human)	protein-coding	3.304	2.800	1.396	1.515	0.652	0.553	0.855	1.409	1.806	2.303	1.330	1.286	1.226	1.650	1.705	1.697	0.915	1.623	1.364	0.769	0.461	1.665	0.986	0.565	4.379
256	chr1	64799296	64804659	+	0	NA	intron (NM_001039493, intron 7 of 7)	intron (NM_001039493, intron 7 of 7)	-64227	NM_022721	14367	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	7.641	1.258	1.116	3.467	4.555	2.778	6.044	4.792	3.395	4.270	4.064	2.558	5.807	9.565	4.056	7.193	nan	4.844	0.903	0.928	0.617	0.821	0.849	0.872	5.025
13996	chr8	11275192	11280203	+	0	NA	intron (NR_133670, intron 1 of 52)	intron (NR_133670, intron 1 of 52)	-35108	NM_009932	12827	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	3.574	1.784	0.541	5.222	2.508	1.061	1.537	2.952	2.044	2.355	1.157	0.724	1.644	2.007	2.262	3.277	1.945	3.770	1.332	1.062	0.786	2.737	0.784	0.437	2.453
10264	chr4	89087502	89096223	+	0	NA	Intergenic	L2|LINE|L2	41555	NR_033533	100040617	Mm.171720	NR_033533	ENSMUSG00000085183	Gm12603	OTTMUSG00000007693	predicted gene 12603	ncRNA	5.223	nan	0.518	3.563	5.932	3.375	2.882	nan	nan	5.748	2.689	1.743	3.238	8.256	3.915	4.303	2.468	nan	0.874	nan	0.785	1.413	0.704	0.807	3.849
7613	chr19	18804740	18806075	+	0	NA	intron (NM_153417, intron 13 of 38)	L1_Mus1|LINE|L1	55424	NM_153417	225997	Mm.215171	NM_153417	ENSMUSG00000024727	Trpm6	CHAK2|TRPM6/CHAK2	transient receptor potential cation channel, subfamily M, member 6	protein-coding	2.853	0.647	0.048	2.173	1.792	0.314	2.261	1.541	2.643	2.602	1.796	1.308	2.936	3.703	3.152	4.750	3.573	3.864	0.273	0.131	0.324	0.558	0.266	0.308	3.703
2810	chr11	101443190	101444230	+	0	NA	intron (NM_011289, intron 3 of 4)	intron (NM_011289, intron 3 of 4)	1465	NM_011289	19942	Mm.340658	NM_011289	ENSMUSG00000063316	Rpl27	-	ribosomal protein L27	protein-coding	10.404	6.308	2.845	6.543	4.401	1.952	5.032	6.293	6.423	5.235	3.555	2.455	4.661	6.961	7.191	8.266	6.085	8.278	4.252	2.591	1.542	5.046	3.427	1.869	6.485
13486	chr7	106630768	106632718	+	0	NA	intron (NM_001277180, intron 1 of 2)	intron (NM_001277180, intron 1 of 2)	12902	NM_001277179	434223	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	8.212	10.440	3.486	6.423	3.720	1.346	5.429	8.009	4.946	5.646	5.333	3.328	7.438	6.763	8.977	8.867	5.389	8.174	nan	2.239	1.614	6.463	1.937	0.987	10.068
6704	chr17	47874057	47875245	+	0	NA	exon (NM_028767, exon 13 of 17)	exon (NM_028767, exon 13 of 17)	-39960	NM_001109973	17240	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	12.924	19.720	9.051	10.658	4.402	4.905	16.332	10.707	4.581	16.358	6.065	3.705	8.767	14.753	9.977	13.908	11.509	8.108	5.182	4.292	5.657	4.269	4.590	7.880	20.944
9468	chr3	89187446	89200978	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-8713	NM_001077411	14466	Mm.5031	NM_008094	ENSMUSG00000028048	Gba	GBA1|GC|GCase|GLUC|betaGC	glucosidase, beta, acid	protein-coding	7.938	7.638	2.347	7.652	4.917	2.323	9.029	8.177	4.486	7.878	5.094	3.227	6.482	10.066	7.539	9.001	5.535	7.470	nan	3.394	2.980	6.420	2.855	2.260	11.315
4840	chr14	73873434	73875296	+	0	NA	Intergenic	Intergenic	321579	NM_011506	20916	Mm.38951	NM_011506	ENSMUSG00000022110	Sucla2	4930547K18Rik|A-SCS	succinate-Coenzyme A ligase, ADP-forming, beta subunit	protein-coding	5.146	1.848	1.209	3.883	1.854	1.491	2.062	5.800	3.022	3.612	4.113	2.990	2.359	3.706	2.530	2.840	2.347	3.454	1.650	1.495	1.488	0.555	1.868	0.992	3.435
4545	chr14	26129095	26135188	+	0	NA	Intergenic	L1MB2|LINE|L1	9532	NM_001177538	100039227	Mm.428840	NM_001177538	ENSMUSG00000072675	Duxbl2	ENSMUSG00000072675|Gm10394	double homeobox B-like 2	protein-coding	3.758	1.662	0.896	2.889	1.730	1.015	3.865	6.741	2.799	3.007	1.871	2.142	3.363	5.625	5.006	5.572	2.609	3.682	2.370	1.347	0.891	nan	2.008	1.591	5.052
14460	chr8	93392840	93394556	+	0	NA	Intergenic	RLTR13A1|LTR|ERVK	-56489	NM_021456	12623	Mm.22720	NM_021456	ENSMUSG00000057074	Ces1g	Ces-1|Ces1|Ses-1	carboxylesterase 1G	protein-coding	7.440	5.181	1.916	5.205	1.864	0.671	4.371	10.822	2.455	3.020	2.126	2.135	4.424	5.074	5.074	6.415	3.126	4.520	1.807	1.803	1.103	3.427	1.548	0.850	5.110
4344	chr13	102293220	102295066	+	0	NA	Intergenic	Intergenic	-399415	NM_008533	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly78|RP105	CD180 antigen	protein-coding	3.860	1.281	0.962	2.713	1.670	0.928	1.186	3.636	3.271	2.480	2.738	1.051	2.728	3.361	3.393	3.336	1.869	2.685	1.095	0.603	0.616	2.683	0.180	0.155	3.476
5273	chr15	66761028	66768022	+	0	NA	intron (NM_009375, intron 38 of 47)	intron (NM_009375, intron 38 of 47)	67304	NM_001029841	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	nan	1.575	0.815	3.422	2.225	1.196	1.916	2.578	2.111	1.779	2.443	1.227	1.561	2.028	1.928	1.854	1.540	2.666	4.952	4.272	2.681	5.870	3.132	2.885	2.051
6542	chr17	32049600	32058906	+	0	NA	intron (NM_001163734, intron 7 of 12)	intron (NM_001163734, intron 7 of 12)	5968	NM_001163734	72462	Mm.102761	NM_028244	ENSMUSG00000058392	Rrp1b	2600005C20Rik|D030064A17|Kiaa0179|mKIAA0179	ribosomal RNA processing 1 homolog B (S. cerevisiae)	protein-coding	5.689	0.975	0.491	8.733	6.984	4.316	4.050	3.917	6.042	9.512	7.533	3.608	5.351	10.628	4.522	7.784	3.931	7.317	0.852	0.797	0.830	1.876	1.461	1.136	8.337
1221	chr10	39896472	39898346	+	0	NA	intron (NR_033628, intron 1 of 3)	B4A|SINE|B4	1829	NR_033628	213332	Mm.484359	NR_033628		Mfsd4b4	AA474331	major facilitator superfamily domain containing 4B4	pseudo	1.067	0.891	0.737	1.492	1.123	0.827	0.501	1.713	1.281	1.274	0.727	1.038	0.339	0.592	0.711	0.746	0.714	1.188	1.774	5.949	7.646	3.849	6.760	6.898	0.750
6135	chr16	56857219	56860108	+	0	NA	intron (NM_019631, intron 1 of 5)	L1M2|LINE|L1	27500	NM_019631	56277	Mm.262328	NM_019631	ENSMUSG00000022754	Tmem45a	C630002M10Rik|M32486|p19.5	transmembrane protein 45a	protein-coding	0.493	0.528	0.327	0.434	0.322	0.015	0.348	0.887	1.208	0.488	5.424	0.704	0.287	0.249	0.379	nan	0.693	0.673	nan	0.355	0.410	0.197	0.440	0.679	0.271
1200	chr10	27793868	27796966	+	0	NA	Intergenic	L1Md_A|LINE|L1	-178475	NM_008481	16773	Mm.256087	NM_008481	ENSMUSG00000019899	Lama2	5830440B04|dy|mKIAA4087|mer|merosin	laminin, alpha 2	protein-coding	7.238	2.185	0.452	9.859	3.898	2.256	6.469	6.999	6.615	11.668	6.381	5.301	6.716	7.510	10.113	9.346	6.791	9.419	2.841	1.528	0.985	3.203	2.731	1.735	12.567
1757	chr10	116165263	116166584	+	0	NA	intron (NM_011217, intron 4 of 13)	L1Md_F3|LINE|L1	-11335	NM_001161839	19279	Mm.336316	NM_011217	ENSMUSG00000020151	Ptprr	Gmcp1|PTP-SL|PTPBR7|RPTPRR|mPTP213	protein tyrosine phosphatase, receptor type, R	protein-coding	2.494	2.607	2.001	1.158	0.909	0.281	2.951	2.194	2.041	2.251	1.837	0.288	2.135	2.715	2.062	1.299	1.811	nan	2.597	2.125	1.091	3.018	3.898	2.059	1.895
4193	chr13	59867769	59880546	+	0	NA	Intergenic	Intergenic	-51010	NM_153538	214290	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	5.690	3.985	1.344	5.204	3.501	2.116	4.844	7.139	4.229	6.840	2.252	1.802	6.042	8.572	6.643	nan	3.459	6.179	2.429	1.075	0.825	3.100	1.403	1.238	nan
918	chr1	179578201	179579926	+	0	NA	intron (NM_146105, intron 1 of 10)	intron (NM_146105, intron 1 of 10)	32534	NM_146105	226744	Mm.87662	NM_146105	ENSMUSG00000038949	Cnst	9630058J23Rik	consortin, connexin sorting protein	protein-coding	7.245	1.444	0.706	2.222	5.049	2.603	6.187	2.966	2.753	4.562	3.375	1.483	4.203	4.792	2.942	5.326	4.332	4.045	0.757	1.370	1.195	0.762	1.063	1.028	3.618
8406	chr2	84389041	84392543	+	0	NA	intron (NM_018782, intron 2 of 15)	intron (NM_018782, intron 2 of 15)	34474	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	2.567	0.570	0.521	0.881	2.284	1.183	3.875	5.828	3.402	2.648	5.738	5.001	2.982	3.071	1.745	1.894	1.475	2.061	1.719	0.644	0.482	1.309	1.605	1.335	1.590
1413	chr10	70615047	70617277	+	0	NA	intron (NR_045291, intron 3 of 5)	intron (NR_045291, intron 3 of 5)	-16871	NM_178621	70911	Mm.19825	NM_178621	ENSMUSG00000037747	Phyhipl	4921522K17Rik|AI267048	phytanoyl-CoA hydroxylase interacting protein-like	protein-coding	5.339	0.862	0.616	1.335	0.848	0.611	4.527	3.397	1.087	1.539	0.520	0.331	4.977	3.259	3.650	5.204	3.837	2.886	0.582	0.705	0.330	0.385	0.763	0.363	4.363
11805	chr5	136379178	136395998	+	0	NA	intron (NM_001291239, intron 4 of 22)	L2c|LINE|L2	-11785	NR_030500	723975		NR_030500	ENSMUSG00000106479	Mir721	Mirn721|miRY|mir-721|mmu-mir-721	microRNA 721	ncRNA	4.472	1.409	0.579	5.055	5.800	4.027	4.168	7.314	4.213	5.282	2.231	2.107	4.726	8.809	6.483	5.329	3.038	5.287	1.556	1.178	1.107	1.439	nan	0.905	3.487
9959	chr4	19797781	19800751	+	0	NA	Intergenic	Lx2|LINE|L1	-19461	NM_028746	74087	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	4.339	0.729	0.494	3.759	3.976	1.660	2.594	2.449	3.666	4.220	1.630	0.748	4.398	6.658	4.308	4.667	3.881	5.384	0.812	0.763	0.206	0.572	0.442	0.235	4.227
7539	chr19	9106697	9110468	+	0	NA	Intergenic	Intergenic	-20626	NM_011681	22287	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	6.227	1.972	0.906	3.971	3.042	2.107	5.000	6.583	3.564	3.211	4.178	3.460	4.256	6.859	5.192	6.509	6.045	6.307	0.734	0.728	0.470	0.783	0.829	0.576	9.399
7326	chr18	65045791	65049106	+	0	NA	intron (NM_031881, intron 1 of 29)	intron (NM_031881, intron 1 of 29)	23921	NM_031881	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	5.961	6.956	2.736	6.430	2.700	2.214	5.141	5.180	4.491	7.953	2.593	2.776	6.570	4.731	6.727	7.338	5.205	6.196	2.369	1.927	2.418	3.431	2.175	2.921	10.430
2107	chr11	44498232	44500573	+	0	NA	Intergenic	Intergenic	-19562	NM_028862	74315	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	3.198	9.991	6.931	2.776	1.172	0.732	0.736	nan	1.319	1.772	0.650	0.583	0.667	1.455	1.150	nan	1.105	nan	nan	1.503	0.468	nan	nan	0.289	1.333
12844	chr6	145419586	145423006	+	0	NA	intron (NM_028742, intron 5 of 9)	intron (NM_028742, intron 5 of 9)	13629	NM_028742	74071	Mm.441497	NM_028742	ENSMUSG00000054966	Lmntd1	4933403M22Rik|AI482300|Ifltd1|Lmna-rs1|Lmna1|OTTMUSG00000022798	lamin tail domain containing 1	protein-coding	nan	0.608	0.189	nan	0.167	0.011	0.551	nan	0.507	nan	0.493	0.324	nan	0.276	0.423	1.071	0.493	0.900	3.756	nan	1.039	4.641	2.944	1.845	nan
6960	chr17	88654850	88658271	+	0	NA	Intergenic	Intergenic	-12100	NM_023630	71828	Mm.61330	NM_023630	ENSMUSG00000024154	Gtf2a1l	1700011N16Rik|Alf|Gtf2a1lf	general transcription factor IIA, 1-like	protein-coding	6.910	6.744	2.408	7.547	4.197	3.016	4.920	6.308	5.733	8.874	7.756	3.807	3.967	7.763	6.941	7.586	3.581	8.397	2.290	1.771	1.347	2.430	1.077	0.887	13.020
1598	chr10	92605511	92608734	+	0	NA	Intergenic	Intergenic	115296	NM_008682	17997	Mm.2998	NM_008682	ENSMUSG00000019988	Nedd1	-	neural precursor cell expressed, developmentally down-regulated gene 1	protein-coding	nan	0.968	0.673	1.441	3.566	2.218	1.843	2.642	2.199	2.234	2.661	1.838	1.826	3.997	2.153	2.245	2.152	nan	0.666	1.160	1.298	nan	nan	0.681	1.532
9395	chr3	84099764	84101226	+	0	NA	intron (NM_029797, intron 6 of 7)	intron (NM_029797, intron 6 of 7)	55291	NM_029797	76915	Mm.274829	NM_029797	ENSMUSG00000033752	Mnd1	2610034E18Rik|AI591601|Gaj	meiotic nuclear divisions 1	protein-coding	1.295	0.829	0.433	0.970	1.395	0.760	1.573	1.517	1.388	1.044	0.521	0.742	1.986	3.673	2.042	1.732	1.767	2.087	nan	0.814	0.810	1.272	1.231	1.256	1.599
3453	chr12	77474904	77478555	+	0	NA	TTS (NM_016893)	TTS (NM_016893)	66588	NM_001252616	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	2.162	9.088	6.141	1.748	1.472	0.927	1.150	1.263	1.392	1.364	1.452	0.627	1.173	1.488	1.514	nan	1.245	1.855	0.793	1.304	0.881	0.796	0.897	0.902	1.410
1856	chr10	127495120	127498177	+	0	NA	intron (NM_027900, intron 21 of 23)	B2_Mm1t|SINE|B2	-5069	NM_177707	237611	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	10.501	13.325	4.067	12.160	5.883	3.532	8.402	7.968	5.688	12.151	7.188	3.963	8.936	9.805	11.539	11.669	7.304	10.508	7.317	3.049	3.744	8.472	3.868	4.972	15.426
1491	chr10	79735661	79739503	+	0	NA	intron (NM_172551, intron 15 of 20)	intron (NM_172551, intron 15 of 20)	8999	NM_172551	216151	Mm.39001	NM_172551	ENSMUSG00000020329	Polrmt	1110018N15Rik|4932416K13	polymerase (RNA) mitochondrial (DNA directed)	protein-coding	3.922	1.111	1.025	nan	4.468	4.010	3.704	3.136	2.791	3.902	0.832	0.722	3.940	5.828	nan	5.068	3.397	3.739	nan	0.668	1.067	0.923	0.438	0.737	6.834
1804	chr10	120855796	120878269	+	0	NA	intron (NM_177092, intron 2 of 6)	intron (NM_177092, intron 2 of 6)	9403	NR_038023	100504616	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	OTTMUSG00000027725	predicted gene 15910	ncRNA	6.759	5.697	3.154	5.907	5.507	4.098	6.276	4.718	4.461	5.021	2.726	2.444	5.987	7.351	5.410	6.341	5.099	nan	2.412	2.265	2.527	3.227	2.113	1.924	9.028
632	chr1	134995345	135000982	+	0	NA	intron (NM_001033409, intron 13 of 17)	intron (NM_001033409, intron 13 of 17)	35598	NM_001278115	67196	Mm.284587	NM_026024	ENSMUSG00000026429	Ube2t	2700084L22Rik|C80607	ubiquitin-conjugating enzyme E2T	protein-coding	2.819	1.139	0.735	nan	1.996	1.408	4.221	5.158	2.410	2.797	2.282	1.725	5.709	4.622	4.282	nan	3.279	4.125	1.424	1.368	1.109	3.053	1.687	1.494	nan
14078	chr8	24579808	24585323	+	0	NA	Intergenic	Intergenic	-6232	NM_145949	209176	Mm.219580	NM_145949	ENSMUSG00000031549	Ido2	AI265623|C230043N17Rik|Ido-2|Indol1	indoleamine 2,3-dioxygenase 2	protein-coding	0.460	nan	0.601	0.583	0.191	0.091	0.330	0.480	0.452	0.367	1.512	0.601	0.160	0.326	0.360	0.515	0.515	0.509	0.761	2.187	1.510	5.269	1.997	1.667	0.675
2357	chr11	68828331	68830561	+	0	NA	intron (NM_023668, intron 8 of 8)	intron (NM_023668, intron 8 of 8)	23685	NM_023668	83431	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	8.347	9.379	4.200	5.805	5.529	3.963	5.116	6.264	4.248	4.448	5.919	3.719	4.346	6.144	6.579	8.130	6.260	6.797	6.552	6.850	5.041	7.810	7.259	7.191	7.687
394	chr1	88393523	88406673	+	0	NA	Intergenic	Intergenic	-6912	NM_029269	75396	Mm.173058	NM_029269	ENSMUSG00000026295	Spp2	0610038O04Rik|pp-24|spp24	secreted phosphoprotein 2	protein-coding	4.550	10.167	4.005	4.145	1.643	0.953	5.056	3.363	2.304	2.927	2.415	1.591	4.318	4.602	5.028	7.094	4.421	4.354	4.672	3.859	4.061	nan	5.286	5.035	6.742
1371	chr10	66859825	66861442	+	0	NA	Intergenic	Intergenic	59751	NR_138560	68488	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	6.874	0.632	0.585	0.831	3.136	2.021	1.742	3.219	1.818	3.229	0.283	0.503	1.643	2.749	1.467	1.621	3.061	1.934	0.701	0.378	0.350	0.683	0.443	0.471	5.011
14214	chr8	47873772	47881148	+	0	NA	intron (NM_133791, intron 8 of 22)	intron (NM_133791, intron 8 of 22)	52978	NM_029383	75677	Mm.390033	NM_029383	ENSMUSG00000038064	Cldn22	2210404A22Rik|5330431C14Rik|9530051B05Rik	claudin 22	protein-coding	7.740	3.877	3.510	3.426	6.188	3.140	3.023	7.663	3.812	4.357	4.193	2.493	3.963	5.538	4.132	4.616	4.479	4.401	1.717	3.191	1.651	1.685	2.033	1.279	4.076
5068	chr15	25317207	25327635	+	0	NA	Intergenic	Intergenic	91343	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	2.648	8.503	4.610	0.649	0.605	0.365	2.338	3.153	1.556	1.515	0.504	1.595	3.466	1.165	1.338	0.797	1.598	1.266	1.138	0.619	0.576	1.189	0.738	0.560	1.077
11770	chr5	134658383	134661282	+	0	NA	intron (NM_001305875, intron 12 of 14)	intron (NM_001305875, intron 12 of 14)	18416	NM_001305875	16885	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	6.749	8.482	5.114	8.136	6.176	4.744	8.794	7.204	5.047	8.023	5.525	6.493	6.516	10.083	8.294	7.754	8.759	6.225	5.632	3.424	5.261	4.291	4.517	6.895	8.517
9129	chr2	181498318	181503288	+	0	NA	intron (NM_001291204, intron 2 of 4)	B3|SINE|B2	3661	NM_001291204	66314	Mm.136648	NM_025482	ENSMUSG00000000827	Tpd52l2	2810411G23Rik|AU016537|C86069|D54	tumor protein D52-like 2	protein-coding	0.404	0.474	0.413	0.341	0.201	0.182	0.219	0.412	0.296	0.228	0.267	0.170	0.123	0.149	0.260	nan	0.527	nan	8.619	4.820	2.589	8.005	6.756	3.953	nan
15751	chrX	71541905	71543299	+	0	NA	Intergenic	Intergenic	-13315	NM_001293624	15354	Mm.336087	NM_008253	ENSMUSG00000015217	Hmgb3	Hmg2a|Hmg4	high mobility group box 3	protein-coding	5.050	5.651	1.392	4.277	2.119	1.408	3.256	4.039	2.578	4.044	3.495	1.934	2.708	4.766	4.012	6.148	1.760	3.623	2.734	1.502	1.527	4.010	1.863	1.103	7.221
4954	chr14	119053667	119061932	+	0	NA	intron (NM_001081252, intron 14 of 38)	intron (NM_001081252, intron 14 of 38)	41635	NM_001081252	66435	Mm.213406	NM_025561	ENSMUSG00000042104	Uggt2	1810064L21Rik|3110001A05Rik|3110027P15Rik|A230065J02Rik|AW047562|Ugcgl2	UDP-glucose glycoprotein glucosyltransferase 2	protein-coding	5.289	1.433	0.971	3.013	3.571	2.249	5.280	6.830	4.576	5.500	4.940	5.966	5.345	6.633	nan	6.818	3.914	5.366	0.929	0.706	0.564	0.563	0.968	0.814	8.125
2645	chr11	94008662	94011029	+	0	NA	intron (NM_001199203, intron 1 of 29)	L1MA4A|LINE|L1	13754	NM_027569	70834	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	1.664	nan	0.547	3.149	1.325	0.797	1.988	3.130	1.820	2.368	0.833	2.420	1.995	3.253	3.081	4.619	2.788	3.046	6.655	6.468	5.980	9.137	6.499	7.238	4.528
1519	chr10	80791092	80792826	+	0	NA	intron (NM_199322, intron 27 of 27)	intron (NM_199322, intron 27 of 27)	6667	NM_023900	78670	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	3.029	8.547	1.293	5.308	1.181	0.197	0.830	0.845	2.074	2.296	1.023	0.526	0.550	1.327	1.778	2.568	1.023	2.787	nan	1.396	1.383	0.770	0.451	0.447	3.644
3173	chr12	8811042	8823581	+	0	NA	Intergenic	Intergenic	45915	NM_011519	20969	Mm.2580	NM_011519	ENSMUSG00000020592	Sdc1	AA408134|AA409076|CD138|Sstn|Synd|Synd1|syn-1	syndecan 1	protein-coding	9.591	0.701	0.442	5.066	4.236	2.192	8.450	6.698	6.719	8.461	9.928	4.318	10.461	10.962	8.752	10.097	7.087	9.199	1.119	0.627	0.553	1.269	1.164	0.840	12.697
13544	chr7	112780500	112782626	+	0	NA	intron (NM_009346, intron 2 of 12)	intron (NM_009346, intron 2 of 12)	22179	NM_001166585	21676	Mm.24685	NM_009346	ENSMUSG00000055320	Tead1	2610024B07Rik|B230114H05Rik|Gtrgeo5|TEAD-1|TEF-1|Tcf13|mTEF-1	TEA domain family member 1	protein-coding	8.442	4.295	1.286	8.488	4.210	1.840	7.093	9.067	4.384	8.942	3.289	2.231	7.507	9.439	6.603	9.091	6.251	9.171	nan	1.816	1.611	3.615	2.877	2.494	12.411
11534	chr5	106216555	106225822	+	0	NA	Intergenic	Intergenic	-100152	NR_136913	102635633	Mm.383511	NR_136913	ENSMUSG00000105508	Gm32921	-	predicted gene, 32921	ncRNA	3.372	1.203	0.685	3.868	2.116	1.113	5.771	5.177	2.893	2.744	1.612	1.864	5.453	6.167	5.803	4.972	2.536	4.288	nan	1.016	0.688	2.337	1.877	1.587	4.235
2197	chr11	53607508	53610874	+	0	NA	Intergenic	B2_Mm2|SINE|B2	8147	NR_027491	16189	Mm.276360	NM_021283	ENSMUSG00000000869	Il4	BSF-1|Il-4	interleukin 4	protein-coding	10.608	8.335	2.531	10.101	5.436	2.761	11.129	9.813	7.161	10.868	9.171	4.524	7.639	12.190	9.137	10.907	6.767	8.768	7.536	4.776	3.119	7.774	6.094	3.687	12.456
14615	chr8	114088358	114099332	+	0	NA	Intergenic	Intergenic	-39729	NM_024446	67528	Mm.27889	NM_024437	ENSMUSG00000031767	Nudt7	1300007B24Rik|2210404C19Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 7	protein-coding	2.599	2.923	2.005	2.528	3.185	2.498	1.349	2.096	2.024	1.953	1.233	1.677	1.566	1.777	1.678	nan	1.835	2.266	5.911	7.364	5.859	8.889	6.769	5.726	1.815
13536	chr7	109358457	109359866	+	0	NA	intron (NM_054103, intron 1 of 13)	intron (NM_054103, intron 1 of 13)	79892	NM_054103	117229	Mm.389950	NM_054103	ENSMUSG00000031027	Stk33	4921505G21Rik|AW061264	serine/threonine kinase 33	protein-coding	7.469	11.600	4.414	10.980	6.968	4.244	7.148	8.855	5.211	11.253	7.882	3.300	8.488	11.593	9.158	9.946	7.949	nan	5.206	3.973	4.397	6.564	5.042	5.570	11.986
9348	chr3	60330892	60335707	+	0	NA	Intergenic	Intergenic	-139531	NM_001253713	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	4.084	4.451	2.368	4.528	4.812	2.546	4.338	3.765	4.062	4.029	2.432	1.846	4.421	5.789	5.269	nan	4.862	4.867	1.829	1.790	1.043	1.810	1.279	0.820	3.700
11384	chr5	86655685	86657241	+	0	NA	Intergenic	Intergenic	19835	NM_177024	319875	Mm.253994	NM_177024	ENSMUSG00000035861	Tmprss11b	9930019B18Rik|Tmprss11bnl	transmembrane protease, serine 11B	protein-coding	3.493	0.259	0.295	2.053	2.695	1.699	3.847	2.052	3.657	3.952	1.897	1.130	4.200	5.013	2.974	3.063	4.537	5.023	0.228	0.762	0.236	0.310	0.234	0.434	1.968
12559	chr6	108339708	108341360	+	0	NA	intron (NM_010585, intron 5 of 61)	intron (NM_010585, intron 5 of 61)	127438	NM_010585	16438	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|ENSMUSG00000072853|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	1.770	1.211	0.586	1.259	0.509	0.374	1.548	0.928	0.896	1.128	0.424	0.178	1.210	0.946	1.163	1.788	1.267	1.075	nan	4.964	0.925	5.194	2.720	1.240	1.405
1236	chr10	41238490	41241417	+	0	NA	intron (NM_133999, intron 16 of 22)	B1F|SINE|Alu	63288	NM_133999	103199	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	11.314	16.601	3.794	11.712	5.263	2.902	5.711	9.206	7.523	13.542	8.502	6.292	8.616	10.249	11.462	11.199	7.098	10.420	7.199	3.558	2.398	8.833	5.231	4.419	16.079
11016	chr5	9147294	9154065	+	0	NA	intron (NM_011806, intron 2 of 17)	intron (NM_011806, intron 2 of 17)	11097	NM_001110327	23857	Mm.22480	NM_011806	ENSMUSG00000042508	Dmtf1	Dimp|Dmp1	cyclin D binding myb-like transcription factor 1	protein-coding	4.433	0.729	0.417	2.793	2.405	1.437	2.897	1.861	4.410	5.091	1.014	0.721	5.057	6.449	4.163	3.332	4.557	3.867	0.976	0.829	0.395	0.703	0.640	0.649	1.931
2413	chr11	70729810	70734043	+	0	NA	TTS (NM_153103)	TTS (NM_153103)	25936	NR_105890	102465557		NR_105890	ENSMUSG00000105932	Mir6925	mmu-mir-6925	microRNA 6925	ncRNA	5.021	1.271	1.151	2.008	4.422	2.988	5.712	3.427	4.581	5.390	1.026	1.502	5.122	5.477	4.018	5.703	3.706	4.620	0.868	1.180	0.941	1.106	nan	0.664	3.264
10865	chr4	144822816	144825318	+	0	NA	Intergenic	ERVB5_1-LTR_MM|LTR|ERVK	-37484	NM_001126316	329993	Mm.297407	NM_001126316	ENSMUSG00000078504	Gm438	-	predicted gene 438	protein-coding	8.587	9.264	4.996	5.152	7.271	4.151	3.125	2.880	3.713	4.918	6.017	2.635	2.715	5.563	3.530	3.168	2.754	3.587	3.120	4.220	2.457	2.045	2.629	2.830	4.113
4400	chr13	110421059	110424703	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	27837	NM_152804	20620	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo-like kinase 2	protein-coding	5.621	nan	0.455	3.771	3.691	2.162	4.240	5.763	3.911	4.511	2.572	1.606	4.695	5.632	4.866	5.709	3.004	5.738	0.702	0.839	0.394	nan	0.612	0.519	5.215
5493	chr15	82978230	82981493	+	0	NA	Intergenic	Intergenic	-20565	NR_037241	100526477		NR_037241	ENSMUSG00000092751	Mir3080	mmu-mir-3080	microRNA 3080	ncRNA	8.762	10.562	3.116	9.842	5.010	3.852	7.394	11.998	6.529	8.738	nan	2.447	8.866	8.941	9.914	9.582	6.918	8.521	4.927	1.821	2.469	nan	2.679	3.067	10.955
11668	chr5	122607593	122612897	+	0	NA	intron (NM_009879, intron 2 of 18)	intron (NM_009879, intron 2 of 18)	4273	NM_009879	12589	Mm.10125	NM_009879	ENSMUSG00000029469	Ift81	AW060663|Cdv-1|Cdv-1r|Cdv1	intraflagellar transport 81	protein-coding	5.139	8.191	4.279	5.828	4.224	4.233	4.130	4.540	3.838	5.165	4.364	3.226	3.405	4.410	4.430	5.104	3.640	4.383	nan	nan	4.076	5.071	nan	4.854	5.202
7037	chr18	12785995	12788212	+	0	NA	intron (NR_045524, intron 2 of 11)	intron (NR_045524, intron 2 of 11)	32804	NR_045524	64291	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	nan	2.080	0.928	0.558	0.450	0.168	0.429	0.521	0.357	0.326	6.267	3.288	nan	0.387	0.425	0.855	0.347	0.888	3.352	2.808	1.478	6.413	2.543	1.227	0.689
5015	chr15	6573170	6578649	+	0	NA	Intergenic	Intergenic	-3938	NM_001278269	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	6.961	2.490	1.574	3.786	7.385	5.366	9.640	13.593	4.379	5.928	2.365	1.225	8.522	9.505	7.284	5.686	6.693	7.384	0.704	1.176	0.792	0.517	0.615	0.504	3.904
1815	chr10	121710612	121714974	+	0	NA	Intergenic	L1Md_A|LINE|L1	-27144	NM_173022	270802	Mm.209172	NM_173022	ENSMUSG00000053684	BC048403	E030027L10	cDNA sequence BC048403	protein-coding	4.741	0.450	0.270	1.551	2.582	1.155	4.355	5.383	3.978	3.677	0.538	1.692	6.246	5.441	5.186	4.879	3.225	4.599	0.529	0.460	0.337	0.514	0.277	0.153	3.322
3662	chr12	103570676	103573098	+	0	NA	intron (NM_028980, intron 3 of 24)	intron (NM_028980, intron 3 of 24)	39322	NM_028980	74521	Mm.248619	NM_028980	ENSMUSG00000021209	Ppp4r4	8430415E04Rik|mKIAA1622	protein phosphatase 4, regulatory subunit 4	protein-coding	6.152	1.278	1.189	3.701	3.811	1.330	1.828	1.762	nan	3.228	3.784	0.896	1.044	3.379	2.084	2.227	2.211	3.196	0.805	1.898	1.063	0.894	1.431	0.878	3.268
1005	chr1	187050418	187055573	+	0	NA	intron (NM_028848, intron 9 of 9)	intron (NM_028848, intron 9 of 9)	-72143	NR_040554	69308	Mm.490882	NR_040554	ENSMUSG00000089730	1700007P06Rik	-	RIKEN cDNA 1700007P06 gene	ncRNA	7.481	0.795	0.531	2.382	2.490	1.016	2.603	4.113	3.879	4.465	2.031	1.627	6.532	8.238	5.096	8.070	6.381	5.356	4.576	1.361	0.927	3.834	3.775	2.319	4.373
4280	chr13	91360744	91364912	+	0	NA	Intergenic	Intergenic	25257	NR_045161	320297	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	7.800	5.693	1.666	6.990	6.356	2.990	6.033	6.241	5.443	7.502	6.062	3.013	7.282	9.554	7.137	7.218	4.905	8.105	2.795	2.249	1.118	3.820	2.233	1.752	8.011
11739	chr5	125868820	125875632	+	0	NA	Intergenic	Intergenic	339808	NM_001190352	208151	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding	16.578	13.339	7.264	15.909	18.665	17.059	15.675	14.300	12.532	15.995	14.086	9.370	14.605	19.206	14.973	14.567	14.638	13.907	11.187	7.292	8.430	9.498	9.001	9.254	15.738
4130	chr13	52063136	52066501	+	0	NA	Intergenic	Intergenic	-31923	NR_045061	74050	Mm.84860	NR_045061		4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	4.961	1.278	0.720	3.171	3.404	1.011	4.698	6.930	2.578	3.381	3.722	1.595	3.283	6.434	4.246	4.826	2.725	4.282	1.641	nan	0.573	1.594	1.131	0.615	5.108
2089	chr11	35782901	35795465	+	0	NA	3' UTR (NM_145962, exon 7 of 7)	3' UTR (NM_145962, exon 7 of 7)	6787	NR_029754	723824		NR_029754	ENSMUSG00000065553	Mir103-1	Mirn103-1|mir-103-1	microRNA 103-1	ncRNA	nan	0.469	0.183	3.903	3.984	2.137	4.937	5.430	3.797	6.021	2.874	1.655	5.012	7.215	4.977	nan	3.998	nan	1.557	0.926	1.021	1.691	1.404	1.417	6.339
12702	chr6	125298503	125306998	+	0	NA	Intergenic	Intergenic	11120	NM_010736	17000	Mm.3122	NM_010736	ENSMUSG00000030339	Ltbr	AI256028|CD18|LTbetaR|Ltar|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFRrp|Tnfbr|Tnfrsf3	lymphotoxin B receptor	protein-coding	11.067	nan	1.519	10.451	7.192	3.823	10.635	12.354	5.617	7.889	7.246	3.326	7.846	11.916	9.114	nan	7.791	8.005	4.554	4.247	2.995	5.486	4.809	3.408	12.383
10690	chr4	134793921	134799445	+	0	NA	Intergenic	Intergenic	-28679	NM_145554	100017	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	4.005	5.059	2.766	3.965	4.650	2.989	2.914	3.674	nan	2.955	1.487	0.863	2.363	5.235	3.099	3.019	2.373	nan	4.268	3.228	3.260	5.063	nan	2.500	3.955
15661	chrX	7315948	7318416	+	0	NA	intron (NM_001243762, intron 1 of 13)	intron (NM_001243762, intron 1 of 13)	2176	NM_001243762	12728	Mm.486257	NM_016691	ENSMUSG00000004317	Clcn5	5430408K11Rik|ClC-5|Clc4-1|Clc5|Clcn4-1|D930009B12Rik|DXImx42e|Sfc13|T25545	chloride channel, voltage-sensitive 5	protein-coding	4.971	0.305	0.185	2.759	3.106	0.981	4.386	6.562	2.480	5.279	4.236	1.635	5.012	7.813	4.141	6.427	4.343	4.351	4.462	4.386	1.341	4.268	4.351	1.935	6.808
11646	chr5	119558932	119566060	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	17862	NR_045702	100993	Mm.381453	NR_045702	ENSMUSG00000087516	AW549542	-	expressed sequence AW549542	ncRNA	0.472	0.252	0.344	0.431	0.357	0.190	0.592	0.241	0.205	0.277	0.410	0.284	0.116	0.160	0.217	0.431	0.331	0.316	nan	nan	3.822	5.044	nan	6.291	0.307
10304	chr4	99618787	99620318	+	0	NA	Intergenic	Intergenic	-36747	NM_010425	15221	Mm.4758	NM_010425	ENSMUSG00000067261	Foxd3	CWH3|Genesis|Hfh2	forkhead box D3	protein-coding	3.708	1.288	0.251	3.842	2.510	1.476	3.908	3.037	3.441	4.974	1.903	1.647	4.179	4.275	4.636	6.297	3.395	5.212	1.008	1.139	1.448	nan	0.641	0.557	5.907
4575	chr14	31669364	31671479	+	0	NA	Intergenic	Intergenic	29364	NM_025295	26363	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	2.821	1.052	0.876	1.864	3.302	1.117	3.619	7.649	3.139	3.216	0.889	1.136	3.990	4.852	3.934	4.537	2.400	nan	6.492	3.018	1.989	6.354	5.214	4.891	4.514
13740	chr7	133572249	133573085	+	0	NA	Intergenic	B4A|SINE|B4	29448	NM_028654	73808	Mm.159067	NM_028654	ENSMUSG00000030976	Tex36	4930404H21Rik	testis expressed 36	protein-coding	7.390	15.928	3.596	8.422	3.003	3.280	8.149	9.556	4.248	12.239	6.961	3.242	8.197	8.926	9.385	9.291	6.753	8.132	4.199	1.935	5.020	6.155	3.520	5.406	16.438
215	chr1	58886416	58888280	+	0	NA	Intergenic	Lx|LINE|L1	84846	NM_001080126	12370	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	6.138	0.938	0.707	1.160	2.990	2.503	4.251	3.479	2.997	2.350	1.292	1.331	3.922	3.593	3.545	4.828	7.492	3.306	0.599	0.452	0.717	0.512	0.477	0.557	3.193
14511	chr8	106625838	106627475	+	0	NA	intron (NM_009864, intron 2 of 15)	intron (NM_009864, intron 2 of 15)	23306	NM_009864	12550	Mm.35605	NM_009864	ENSMUSG00000000303	Cdh1	AA960649|ARC-1|E-cad|Ecad|L-CAM|UVO|Um	cadherin 1	protein-coding	4.583	1.429	0.574	8.431	1.727	0.893	1.653	1.488	3.057	3.509	1.041	1.036	1.187	2.102	2.761	4.824	1.709	6.322	0.804	0.715	0.202	nan	0.568	0.163	4.607
4410	chr13	111665161	111667853	+	0	NA	Intergenic	MLT2B1|LTR|ERVL	-19671	NM_172593	218613	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	nan	nan	0.490	0.326	0.223	0.171	0.296	0.377	nan	nan	5.340	2.017	0.352	0.324	0.510	0.698	0.491	nan	1.225	0.621	0.237	nan	1.366	0.704	0.495
687	chr1	137743045	137745371	+	0	NA	Intergenic	Lx|LINE|L1	-222247	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	1.564	1.248	0.305	nan	0.406	0.106	1.005	3.550	1.615	1.374	8.191	2.764	1.316	1.648	1.663	2.147	0.776	1.816	1.348	0.557	0.667	2.833	0.523	0.326	1.646
14210	chr8	47724188	47729591	+	0	NA	Intergenic	Intergenic	-12958	NM_172407	70925	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	5.134	1.839	1.147	1.764	2.639	1.821	4.860	6.743	2.760	2.525	2.833	3.175	5.296	4.078	3.704	5.021	3.941	3.221	1.014	1.180	0.929	0.895	0.460	0.603	2.859
9730	chr3	116652415	116656568	+	0	NA	intron (NM_008246, intron 1 of 11)	intron (NM_008246, intron 1 of 11)	8186	NM_008246	15247	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	4.464	0.663	0.727	4.471	3.157	1.837	3.593	3.959	4.850	4.579	5.122	4.243	5.301	5.174	3.897	4.274	3.726	3.801	2.140	1.001	0.649	1.174	nan	1.513	2.604
9610	chr3	101371576	101377533	+	0	NA	Intergenic	Intergenic	-2571	NM_207205	78908	Mm.257997	NM_207205	ENSMUSG00000042035	Igsf3	1700016K10Rik|2810035F16Rik|4833439O17Rik|mKIAA0466	immunoglobulin superfamily, member 3	protein-coding	3.063	0.855	0.382	1.928	2.312	1.613	6.798	3.993	3.529	3.782	nan	1.303	4.642	5.007	4.660	4.664	3.748	5.152	0.679	0.377	0.424	0.847	0.803	0.538	4.765
9229	chr3	35964709	35966645	+	0	NA	intron (NM_023644, intron 15 of 18)	intron (NM_023644, intron 15 of 18)	-32711	NM_001205361	114893	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	5.581	5.899	2.535	4.173	2.101	1.436	4.717	5.533	2.701	4.443	2.492	2.260	4.605	5.188	4.763	5.320	6.042	4.941	nan	1.783	1.785	nan	1.460	1.354	7.119
5824	chr16	15988221	15993528	+	0	NA	intron (NM_146068, intron 8 of 19)	intron (NM_146068, intron 8 of 19)	103588	NM_007679	12609	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	8.014	1.491	1.034	4.743	7.011	3.876	4.110	4.900	5.470	5.159	4.510	2.873	4.815	4.873	3.107	3.563	3.883	5.384	1.474	1.963	1.327	1.146	1.461	1.037	2.158
15501	chr9	108280280	108282156	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-9239	NM_025449	66257	Mm.10407	NM_025449	ENSMUSG00000032606	Nicn1	1500032A17Rik	nicolin 1	protein-coding	2.502	0.547	0.360	2.720	1.910	1.394	1.543	0.971	2.469	3.900	0.518	0.428	3.071	5.022	2.280	4.267	2.654	2.915	0.554	0.416	0.424	0.492	0.279	0.355	4.540
5509	chr15	83392853	83397613	+	0	NA	intron (NM_011862, intron 2 of 10)	intron (NM_011862, intron 2 of 10)	-27936	NR_027980	69291	Mm.66794	NM_001033147		1700001L05Rik	-	RIKEN cDNA 1700001L05 gene	ncRNA	9.957	7.562	2.792	9.827	6.571	4.411	9.862	14.805	nan	7.158	6.636	4.345	10.014	11.226	nan	9.179	7.042	nan	nan	3.004	2.887	nan	2.321	2.636	10.805
11956	chr5	147759932	147761175	+	0	NA	Intergenic	Intergenic	-34565	NM_010228	14254	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	5.355	7.817	2.656	5.141	5.100	2.561	6.748	5.083	nan	7.769	3.746	2.298	4.632	5.255	6.077	nan	4.308	6.628	5.177	5.556	5.655	4.763	5.591	5.292	nan
5692	chr15	101096553	101098613	+	0	NA	Intergenic	PB1D10|SINE|Alu	-18172	NM_144790	208258	Mm.152952	NM_144790	ENSMUSG00000047034	Ankrd33	A930021G21Rik|Panky|Panky-a	ankyrin repeat domain 33	protein-coding	8.056	4.114	1.777	8.708	5.356	2.829	10.409	12.856	4.218	6.612	3.019	3.063	5.954	7.992	8.726	12.220	8.568	7.873	1.572	2.388	1.696	4.115	2.652	1.898	10.041
2336	chr11	66857671	66861240	+	0	NA	Intergenic	Intergenic	-52536	NM_178656	193003	Mm.440256	NM_178656	ENSMUSG00000048070	Pirt	A530088H08Rik	phosphoinositide-interacting regulator of transient receptor potential channels	protein-coding	1.818	2.250	1.738	2.301	1.731	1.076	0.860	4.814	2.608	2.229	1.042	3.097	2.050	3.133	2.304	2.236	1.199	2.731	3.692	3.250	2.504	3.385	nan	4.738	nan
5872	chr16	20411495	20421615	+	0	NA	intron (NM_176839, intron 2 of 6)	ORR1D1|LTR|ERVL-MaLR	9839	NM_013790	27416	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	7.070	0.731	0.310	3.700	4.786	3.210	4.509	5.692	6.084	5.135	1.984	1.823	5.699	6.731	4.853	6.354	4.343	8.258	0.945	0.967	0.630	0.707	0.657	0.601	4.958
9205	chr3	28664546	28667680	+	0	NA	exon (NM_001163009, exon 31 of 31)	exon (NM_001163009, exon 31 of 31)	-31790	NM_031197	20526	Mm.18443	NM_031197	ENSMUSG00000027690	Slc2a2	AI266973|Glut-2|Glut2	solute carrier family 2 (facilitated glucose transporter), member 2	protein-coding	5.952	0.579	0.518	2.179	2.841	0.984	2.481	1.245	nan	3.184	0.575	0.382	5.117	6.532	nan	4.055	6.657	4.081	0.567	0.728	0.235	0.295	0.499	0.312	3.533
4424	chr13	113540985	113544480	+	0	NA	Intergenic	Intergenic	-39888	NR_045501	70917	Mm.491036	NR_045501		4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	3.930	5.323	2.843	5.965	3.023	2.157	1.455	1.447	2.178	2.393	0.863	0.688	0.975	2.295	1.848	2.625	1.327	3.250	1.132	2.256	1.656	2.403	1.880	1.725	2.837
2190	chr11	53152793	53160851	+	0	NA	intron (NM_177059, intron 8 of 15)	intron (NM_177059, intron 8 of 15)	-36766	NR_046047	790909	Mm.404626	NR_046047	ENSMUSG00000087668	Gm11186	OTTMUSG00000000039	predicted gene 11186	ncRNA	3.505	1.809	1.837	2.073	6.485	6.347	5.125	7.019	3.748	4.489	2.330	4.385	4.596	nan	4.011	2.410	2.767	2.931	nan	1.271	1.592	0.972	1.118	0.968	nan
826	chr1	166248889	166253019	+	0	NA	Intergenic	Intergenic	-3185	NM_001164528	100039795	Mm.101743	NM_001164528	ENSMUSG00000040612	Ildr2	2810478N18Rik|3110063L10Rik|AI852300|D1Ertd471e|Dbsm1|ENSMUSG00000040612|Ll	immunoglobulin-like domain containing receptor 2	protein-coding	5.649	0.534	0.319	3.192	2.206	1.770	1.466	0.883	4.716	5.279	0.834	0.679	5.023	3.505	nan	5.021	3.232	4.318	0.508	0.351	0.656	nan	nan	0.340	5.345
14135	chr8	35085619	35089119	+	0	NA	Intergenic	MTEb|LTR|ERVL-MaLR	-121679	NM_175091	21951	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	3.628	2.120	1.728	1.251	1.422	1.761	3.868	6.115	2.090	1.524	0.940	1.260	5.744	3.655	3.065	3.442	3.406	2.256	0.467	0.626	0.800	0.571	0.599	0.904	1.463
3990	chr13	37949451	37951406	+	0	NA	non-coding (NR_033218, exon 12 of 12)	non-coding (NR_033218, exon 12 of 12)	43762	NM_025965	107513	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	5.376	6.529	1.749	8.855	3.310	2.305	5.875	5.823	4.357	6.566	3.951	2.271	5.547	8.269	7.684	7.984	3.666	7.373	5.436	2.222	3.278	7.284	3.809	3.139	13.034
10549	chr4	128634532	128635257	+	0	NA	Intergenic	L2|LINE|L2	-16275	NM_205823	384059	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	2.495	1.690	0.748	3.489	4.297	1.408	2.225	1.402	1.560	3.082	1.730	0.804	2.143	3.887	3.244	4.101	1.200	2.684	0.791	0.720	0.169	1.697	0.901	0.098	3.849
5467	chr15	81229660	81231398	+	0	NA	Intergenic	Intergenic	-4970	NM_145132	207911	Mm.323523	NM_145132	ENSMUSG00000050164	Mchr1	AW049955|Gpr24|Mch1r	melanin-concentrating hormone receptor 1	protein-coding	15.665	13.420	6.138	11.056	8.485	5.504	17.743	18.947	6.845	9.806	8.458	4.686	14.464	13.908	11.840	11.410	14.133	9.790	6.184	5.832	4.379	6.016	6.196	5.480	15.731
7344	chr18	66600572	66603577	+	0	NA	Intergenic	L2a|LINE|L2	97896	NR_040528	100503565	Mm.98256	NR_040528		Gm9926	ENSMUSG00000053891	predicted gene 9926	ncRNA	2.234	1.655	1.205	2.231	1.448	0.763	2.190	4.599	1.479	1.079	0.963	1.325	1.580	1.070	1.170	1.229	1.498	1.638	0.570	0.575	0.530	0.397	1.158	1.075	1.187
15368	chr9	88168073	88172497	+	0	NA	Intergenic	Intergenic	-157324	NM_011851	23959	Mm.244235	NM_011851	ENSMUSG00000032420	Nt5e	2210401F01Rik|5'-NT|AI447961|CD73|NT|Nt5|eNT	5' nucleotidase, ecto	protein-coding	5.571	1.471	1.000	2.096	4.380	2.603	4.308	5.623	5.230	5.369	5.344	2.739	5.982	6.810	5.168	5.867	4.069	5.985	2.117	1.732	1.083	1.841	2.130	2.006	4.461
5265	chr15	65416202	65418659	+	0	NA	Intergenic	Intergenic	-369611	NM_133766	76740	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	nan	0.386	0.486	0.293	0.117	0.153	0.480	0.878	0.294	0.449	0.430	0.167	0.222	0.236	0.161	0.398	0.988	0.424	2.703	3.938	1.506	2.729	3.105	1.960	0.303
7030	chr18	12324947	12328048	+	0	NA	Intergenic	L1Md_A|LINE|L1	-7527	NM_010680	16774	Mm.42012	NM_010680	ENSMUSG00000024421	Lama3	Lama3B|[a]3B	laminin, alpha 3	protein-coding	11.320	6.507	2.353	7.253	3.795	2.771	4.623	11.833	3.905	6.448	4.324	3.548	8.061	8.826	6.954	9.124	7.513	8.217	1.657	0.939	0.764	2.121	1.579	1.515	10.750
9389	chr3	81785753	81788391	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-14953	NR_138586	320566	Mm.208417	NR_138586	ENSMUSG00000103695	A830029E22Rik	-	RIKEN cDNA A830029E22 gene	ncRNA	5.362	1.917	1.055	1.103	2.057	1.622	9.157	5.739	3.239	2.993	0.379	1.232	7.991	5.188	6.564	6.367	7.085	3.156	1.099	0.971	1.351	1.134	1.292	1.152	4.513
6418	chr17	26159054	26160937	+	0	NA	intron (NM_001159598, intron 2 of 9)	B3A|SINE|B2	21309	NM_001159598	12005	Mm.23684	NM_009733	ENSMUSG00000024182	Axin1	AI316800|Axin|Fu|Kb|Ki|fused|kinky|knobbly	axin 1	protein-coding	4.267	0.967	0.688	1.604	2.347	2.221	8.108	6.842	1.590	1.678	3.166	1.729	4.544	5.017	6.105	6.282	8.273	4.017	0.768	0.774	1.295	0.618	0.611	0.806	5.460
10069	chr4	47364121	47367348	+	0	NA	intron (NM_001312868, intron 1 of 8)	ORR1A3|LTR|ERVL-MaLR	12512	NM_009370	21812	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	7.027	6.430	1.889	5.355	4.880	2.180	7.112	8.699	4.218	8.878	6.141	2.517	4.645	7.410	7.571	7.210	5.264	5.866	3.321	1.820	2.089	nan	2.052	2.716	10.447
2980	chr11	115464635	115465748	+	0	NA	intron (NM_001080934, intron 2 of 3)	B2_Mm2|SINE|B2	2718	NM_001080934	217316	Mm.25773	NM_001080934	ENSMUSG00000045775	Slc16a5	A130015N09Rik|MCT 5|MCT 6|MCT5	solute carrier family 16 (monocarboxylic acid transporters), member 5	protein-coding	10.120	27.342	6.567	17.808	4.543	2.271	8.414	8.437	7.735	20.854	10.157	5.730	9.705	9.752	14.192	13.111	4.191	12.373	6.824	nan	5.814	7.267	3.052	7.132	20.575
11986	chr5	149973493	149977204	+	0	NA	Intergenic	Intergenic	-43327	NM_001289564	140498	Mm.444643	NM_080468	ENSMUSG00000053368	Rxfp2	Gpr106|Great|Lgr8	relaxin/insulin-like family peptide receptor 2	protein-coding	3.264	2.915	1.897	nan	3.763	2.171	4.758	2.953	3.832	3.385	1.369	1.560	4.279	5.636	5.353	5.050	4.398	5.547	1.193	0.739	0.733	0.736	0.618	0.738	4.409
13767	chr7	134413488	134423023	+	0	NA	Intergenic	Intergenic	-41427	NM_001081331	71007	Mm.334285	NM_001081331	ENSMUSG00000030994	D7Ertd443e	4933400E14Rik|FATS|Gm497	DNA segment, Chr 7, ERATO Doi 443, expressed	protein-coding	5.335	nan	2.252	4.666	2.989	2.084	5.346	8.509	nan	4.220	2.156	2.050	7.874	6.199	5.808	7.010	5.637	5.208	1.816	1.302	1.218	2.411	2.010	2.031	4.695
2653	chr11	94178544	94184392	+	0	NA	Intergenic	Intergenic	-29986	NM_009427	22057	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	6.760	8.001	4.519	6.950	7.616	6.075	5.987	5.823	5.480	7.319	3.932	2.881	5.365	7.374	5.335	6.507	5.731	5.871	5.248	nan	5.411	4.686	nan	nan	6.456
12818	chr6	138034645	138035901	+	0	NA	intron (NM_177787, intron 5 of 8)	intron (NM_177787, intron 5 of 8)	44643	NM_177787	277898	Mm.269823	NM_177787	ENSMUSG00000044378	Slc15a5	9830102E05Rik	solute carrier family 15, member 5	protein-coding	3.144	0.212	0.205	1.059	4.724	2.496	5.908	1.731	1.738	1.880	0.340	0.461	1.499	4.575	nan	1.190	1.509	1.906	nan	0.271	0.585	0.266	0.529	0.602	1.601
5883	chr16	21279525	21287961	+	0	NA	intron (NR_046162, intron 1 of 4)	intron (NR_046162, intron 1 of 4)	13129	NR_046162	328646	Mm.404748	NR_046162	ENSMUSG00000096918	Gm16863	A830060N17	predicted gene, 16863	ncRNA	2.403	1.017	0.521	1.893	1.497	0.882	2.778	4.179	3.065	nan	3.543	3.112	3.129	4.706	3.323	nan	2.010	4.122	3.954	1.769	1.212	4.577	3.562	2.519	3.332
5056	chr15	12123391	12127283	+	0	NA	intron (NM_011767, intron 2 of 19)	B3A|SINE|B2	7486	NM_011767	22763	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	6.909	1.135	0.575	2.832	1.789	0.986	6.811	14.149	4.210	5.758	3.668	1.743	8.005	7.532	7.635	6.353	6.776	5.340	2.050	1.559	0.976	2.623	2.008	1.850	6.884
2548	chr11	83663171	83669081	+	0	NA	Intergenic	Intergenic	3542	NM_013652	20303	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	9.579	1.599	0.526	10.141	5.797	3.462	11.976	10.412	10.846	14.691	10.795	7.054	11.999	14.515	13.102	14.173	10.047	14.560	1.232	2.939	2.369	nan	1.796	2.172	16.738
13879	chr7	148183435	148186009	+	0	NA	Intergenic	Intergenic	2869887	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	nan	nan	2.573	1.858	2.291	0.975	0.912	3.009	nan	1.525	6.844	1.566	0.885	1.440	1.077	1.204	1.678	1.161	0.978	2.292	0.982	0.881	nan	1.164	nan
9410	chr3	85627114	85628924	+	0	NA	intron (NM_144896, intron 9 of 12)	IAPEz-int|LTR|ERVK	53890	NM_144896	229487	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	4.438	0.398	0.348	2.862	4.091	3.820	6.727	5.170	3.094	2.904	3.480	3.869	6.581	5.037	4.912	4.962	6.206	4.874	nan	0.906	1.028	1.443	0.701	0.531	3.717
15135	chr9	58694635	58699426	+	0	NA	intron (NM_028598, intron 2 of 5)	MTA_Mm-int|LTR|ERVL-MaLR	44529	NM_028598	73673	Mm.205196	NM_028598	ENSMUSG00000074269	Rec114	2410076I21Rik|4930527A11Rik	REC114 meiotic recombination protein	protein-coding	0.351	0.605	0.189	0.743	0.099	0.032	0.274	nan	0.247	0.214	0.291	0.194	0.080	0.181	0.280	0.577	0.098	0.566	3.796	2.756	1.450	5.945	2.808	1.381	0.534
11466	chr5	97221126	97236282	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-117108	NM_198422	231474	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	7.711	0.974	0.545	5.794	6.363	3.877	7.099	6.619	6.610	7.176	6.921	4.479	6.309	9.747	7.820	8.236	5.057	8.776	1.118	0.929	0.965	1.135	1.231	0.987	6.222
15047	chr9	47389055	47392714	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	-139286	NM_001310841	54725	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	2.169	0.712	0.361	2.175	1.296	0.652	0.884	0.496	2.261	2.457	1.067	1.030	2.089	2.238	nan	3.801	1.829	4.173	0.996	0.875	0.460	nan	0.711	0.668	4.909
12487	chr6	94141152	94142168	+	0	NA	intron (NR_130996, intron 1 of 1)	intron (NR_130996, intron 1 of 1)	95782	NR_130996	78178	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	1.831	0.507	0.571	1.730	2.207	1.537	2.680	3.468	2.095	1.938	0.562	0.670	3.863	4.238	3.425	4.834	3.999	3.049	nan	nan	0.740	0.614	0.348	0.184	1.580
12746	chr6	128784718	128795843	+	0	NA	Intergenic	Intergenic	-1639	NM_001159904	17059	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	9.876	nan	4.925	7.104	7.693	4.637	8.804	7.811	4.808	7.542	6.689	4.516	6.882	11.064	8.334	9.477	11.014	6.554	5.236	5.858	4.063	6.915	6.047	4.853	9.040
5356	chr15	76136042	76139931	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-11430	NM_001142968	271278	Mm.205253	NM_198172	ENSMUSG00000044361	BC024139	6230424I18Rik	cDNA sequence BC024139	protein-coding	nan	nan	0.630	5.555	2.912	1.804	7.833	9.362	3.764	5.129	nan	1.762	9.513	9.203	7.334	6.122	nan	5.893	1.103	1.182	0.941	nan	1.053	0.731	9.061
6890	chr17	81125710	81129116	+	0	NA	Intergenic	L1_Mur3|LINE|L1	-62328	NM_028138	72167	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	9.120	3.863	1.255	11.475	4.667	2.606	10.474	8.537	7.339	14.089	7.766	4.669	7.088	8.785	10.635	13.639	8.832	10.839	3.840	2.107	2.123	4.877	2.901	3.069	16.403
5088	chr15	27927091	27929054	+	0	NA	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	97776	NM_001081302	223435	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	4.233	0.908	0.569	2.076	1.394	0.415	4.163	5.216	2.209	1.618	2.187	0.915	5.516	3.857	3.791	4.610	3.712	4.108	3.162	1.761	1.073	4.318	2.448	1.515	4.827
2625	chr11	88883852	88892408	+	0	NA	Intergenic	B1_Mur4|SINE|Alu	-17798	NR_045955	73921	Mm.439148	NR_045955	ENSMUSG00000087338	Scpep1os	4930405P13Rik	serine carboxypeptidase 1, opposite strand	ncRNA	nan	5.177	3.259	5.869	6.415	5.383	3.220	4.874	3.647	3.141	2.594	1.763	3.577	4.041	3.311	3.265	2.475	3.792	1.347	1.768	2.082	nan	1.519	1.868	nan
14626	chr8	116158350	116160307	+	0	NA	Intergenic	Intergenic	-345687	NM_029297	75465	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	9.090	13.800	3.015	9.792	2.251	1.002	4.458	8.348	5.111	6.510	4.214	2.147	8.234	7.991	10.373	11.487	4.341	8.547	5.075	2.000	1.496	9.806	2.484	1.325	15.288
10001	chr4	41041994	41045154	+	0	NA	intron (NM_007473, intron 3 of 7)	(TAGA)n|Simple_repeat|Simple_repeat	4562	NM_007473	11832	Mm.8728	NM_007473	ENSMUSG00000028427	Aqp7	AQP7L|AQPap	aquaporin 7	protein-coding	nan	1.066	0.251	1.810	1.627	0.740	2.488	5.428	1.496	1.826	9.277	3.884	1.820	5.326	3.860	4.047	1.722	2.271	0.618	0.572	0.234	0.631	0.395	0.241	3.512
4090	chr13	47317469	47322493	+	0	NA	Intergenic	Intergenic	125978	NM_001170643	218215	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	5.153	1.099	0.628	5.121	3.653	1.927	2.073	4.961	3.810	3.327	2.660	1.668	2.956	4.657	3.924	4.694	2.422	nan	2.040	nan	0.700	1.467	0.803	0.840	nan
3400	chr12	71654539	71657559	+	0	NA	Intergenic	RLTR20A4|LTR|ERVK	115442	NR_045941	73815	Mm.416916	NR_045941		4930404H11Rik	-	RIKEN cDNA 4930404H11 gene	ncRNA	1.385	1.339	0.590	1.705	0.757	0.186	1.321	1.171	1.421	0.898	5.705	2.490	1.246	1.343	1.165	1.538	1.253	1.598	0.782	0.444	0.203	0.506	0.327	0.210	1.365
7878	chr19	53626700	53632499	+	0	NA	intron (NM_007790, intron 17 of 28)	intron (NM_007790, intron 17 of 28)	29203	NM_007790	13006	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	4.033	nan	0.750	1.738	1.804	1.476	6.426	8.871	2.861	3.064	2.294	3.488	3.863	5.428	nan	4.100	3.146	3.915	0.685	0.754	0.910	1.302	1.014	0.928	nan
5143	chr15	38444699	38456036	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	40180	NR_105916	102465574		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	5.952	4.656	2.522	4.680	3.659	2.427	9.542	9.431	4.967	6.735	2.937	2.772	10.298	7.164	7.046	7.893	9.800	6.116	2.969	1.905	2.005	nan	2.396	2.328	nan
730	chr1	152306068	152311405	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	77946	NM_025677	66637	Mm.379120	NM_025677	ENSMUSG00000014980	Tsen15	5730449L18Rik|AL023077|Sen15	tRNA splicing endonuclease subunit 15	protein-coding	4.791	0.863	0.613	2.707	2.376	1.840	3.754	3.831	3.596	4.078	0.742	0.705	6.942	7.022	2.845	5.109	3.840	4.102	0.601	0.473	0.230	0.432	0.375	0.313	2.356
16	chr1	10027479	10030247	+	0	NA	intron (NR_102282, intron 6 of 7)	intron (NR_102282, intron 6 of 7)	9296	NR_102282	26754	Mm.402384	NM_013715	ENSMUSG00000025917	Cops5	AI303502|CSN5|Jab1|Mov34|Sgn5	COP9 signalosome subunit 5	protein-coding	16.291	11.384	4.649	10.903	6.869	3.091	10.731	8.512	6.407	10.898	8.671	5.283	9.498	11.684	9.995	15.250	10.786	10.797	5.411	3.804	3.472	5.006	4.512	4.092	14.561
8428	chr2	90584729	90587593	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	-5514	NM_008982	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	9.275	12.941	7.057	8.657	5.809	6.350	7.336	9.846	6.955	9.849	6.633	4.069	8.899	7.661	9.551	10.395	9.351	9.506	6.787	4.373	5.634	6.498	6.364	8.452	12.561
15203	chr9	65042940	65050326	+	0	NA	intron (NM_028906, intron 6 of 20)	B2_Mm2|SINE|B2	14175	NM_028906	74388	Mm.202749	NM_028906	ENSMUSG00000032393	Dpp8	2310004I03Rik|4932434F09Rik|AI666706|DPP VIII	dipeptidylpeptidase 8	protein-coding	3.299	5.458	2.787	4.227	2.072	1.447	2.005	3.319	2.675	3.097	1.989	1.740	5.471	6.207	nan	3.095	2.482	4.232	nan	2.424	2.616	3.300	1.923	1.269	3.756
13529	chr7	108910316	108912210	+	0	NA	Intergenic	L1VL1|LINE|L1	-16858	NM_207160	277935	Mm.377873	NM_207160	ENSMUSG00000066239	Olfr519	MOR268-6	olfactory receptor 519	protein-coding	1.215	2.542	0.643	1.742	1.973	1.435	1.907	1.543	1.617	1.364	0.903	0.430	2.167	3.062	1.939	1.641	0.931	2.553	3.317	2.747	2.501	6.340	0.526	0.600	3.614
921	chr1	179722715	179727313	+	0	NA	Intergenic	MYSERV6-int|LTR|ERVK	56783	NM_178653	109232	Mm.136458	NM_178653	ENSMUSG00000038936	Sccpdh	AW214504|C330023F11Rik	saccharopine dehydrogenase (putative)	protein-coding	10.177	7.759	3.732	6.202	3.707	2.516	5.657	7.953	4.674	6.166	5.626	4.712	7.686	7.399	6.873	9.342	7.945	8.533	3.351	2.711	1.587	3.502	2.564	2.308	7.624
5233	chr15	59626238	59629128	+	0	NA	Intergenic	MER33|DNA|hAT-Charlie	-20971	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	2.479	4.221	1.396	2.670	3.121	1.346	5.238	6.227	2.338	nan	1.509	1.644	6.202	7.008	4.548	3.289	1.588	4.603	1.803	0.931	0.274	2.669	1.439	0.587	2.224
2880	chr11	105802405	105810015	+	0	NA	intron (NM_181071, intron 7 of 25)	intron (NM_181071, intron 7 of 25)	137937	NM_007805	13056	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	8.627	2.194	0.927	nan	4.021	2.643	7.126	7.851	5.944	9.212	6.132	2.855	7.902	9.271	8.108	8.013	6.287	8.338	6.626	4.333	3.547	nan	4.460	3.561	10.299
13999	chr8	11325937	11328723	+	0	NA	intron (NM_009932, intron 3 of 47)	MIRb|SINE|MIR	-14504	NM_009931	12826	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	5.898	1.351	0.396	4.561	4.646	3.616	3.239	4.151	4.397	4.778	2.100	1.035	4.110	4.634	4.602	5.888	2.456	6.831	0.836	0.916	0.319	1.065	0.717	0.479	8.921
10470	chr4	120540361	120543353	+	0	NA	intron (NM_016748, intron 17 of 18)	intron (NM_016748, intron 17 of 18)	9626	NM_177570	194219	Mm.29788	NM_177570	ENSMUSG00000047518	Slfnl1	4933406A14Rik	schlafen like 1	protein-coding	0.205	0.944	0.226	0.356	0.259	0.123	0.107	0.244	0.198	0.271	0.248	0.099	0.096	0.275	0.225	nan	0.306	0.501	4.738	2.904	1.151	4.746	5.334	2.568	0.679
13823	chr7	139765254	139769083	+	0	NA	Intergenic	Intergenic	-11850	NR_105827	102465215		NR_105827	ENSMUSG00000098619	Mir6401	Gm27442|mmu-mir-6401	microRNA 6401	ncRNA	4.398	5.184	1.834	6.509	5.348	3.678	2.339	1.360	nan	7.536	3.011	2.906	3.979	5.308	3.561	5.208	3.454	4.710	1.288	1.295	1.348	1.537	0.858	1.188	5.799
7998	chr2	21155689	21159172	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	47935	NM_027728	71233	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	5.711	0.618	0.370	2.752	4.211	2.090	6.067	6.964	4.588	3.515	8.906	3.750	9.500	6.428	6.003	7.240	4.058	5.135	0.848	1.063	0.363	1.283	0.550	0.304	8.188
9186	chr3	27417234	27422707	+	0	NA	intron (NM_173182, intron 25 of 25)	RMER30|DNA|hAT-Charlie	48619	NM_177330	208188	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|Ghsr1a	growth hormone secretagogue receptor	protein-coding	2.333	0.725	0.443	2.743	1.450	0.560	nan	2.354	2.934	2.440	0.877	0.864	2.287	3.070	nan	3.367	2.262	nan	4.694	3.411	2.481	5.091	3.974	2.516	2.541
10930	chr4	150113816	150118515	+	0	NA	Intergenic	MTE2a|LTR|ERVL-MaLR	-3179	NM_019741	56485	Mm.260220	NM_019741	ENSMUSG00000028976	Slc2a5	AI526984|Glut5|Slc5a	solute carrier family 2 (facilitated glucose transporter), member 5	protein-coding	5.594	nan	0.952	4.041	9.051	6.007	4.065	5.366	4.326	5.496	2.033	2.371	2.907	6.731	4.014	4.392	3.516	4.567	2.284	1.900	1.661	2.028	2.128	2.471	3.918
994	chr1	186095389	186102592	+	0	NA	intron (NM_146106, intron 3 of 4)	intron (NM_146106, intron 3 of 4)	18320	NM_146106	226791	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	5.872	1.098	0.589	2.788	2.196	1.269	4.135	6.820	6.348	8.185	3.652	3.935	7.923	5.548	3.924	nan	5.117	4.553	0.608	0.615	0.391	0.453	0.465	0.425	2.520
5360	chr15	76480516	76492092	+	0	NA	intron (NR_138589, intron 1 of 8)	Lx5c|LINE|L1	8942	NR_138589	15499	Mm.347444	NM_008296	ENSMUSG00000022556	Hsf1	AA960185|HSTF|HSTF 1|Hsf1alpha|Hsf1beta	heat shock factor 1	protein-coding	5.606	nan	0.996	nan	2.375	2.064	7.832	10.294	3.156	nan	nan	1.847	7.742	6.793	7.207	7.200	nan	5.370	2.198	1.180	1.592	nan	1.750	1.723	8.111
9940	chr4	11248324	11251535	+	0	NA	intron (NM_178112, intron 2 of 27)	L1_Mus1|LINE|L1	4330	NM_178112	72656	Mm.246713	NM_178112	ENSMUSG00000040738	Ints8	2810013E07Rik|AV063769|D130008D20Rik	integrator complex subunit 8	protein-coding	7.815	5.208	2.430	5.517	4.715	2.958	5.906	5.496	5.087	6.526	6.462	2.891	5.285	7.781	5.982	7.111	3.885	6.303	3.044	nan	2.235	3.046	3.493	3.107	8.383
6847	chr17	73183358	73188139	+	0	NA	intron (NM_001177967, intron 3 of 5)	intron (NM_001177967, intron 3 of 5)	77763	NM_001177967	225010	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	6.723	6.957	2.478	7.524	6.203	5.001	6.509	5.249	nan	10.318	4.067	2.934	5.297	8.284	6.476	7.945	4.968	6.437	3.589	1.818	2.963	3.464	1.866	3.169	9.635
2788	chr11	100720655	100722645	+	0	NA	intron (NM_024456, intron 1 of 5)	intron (NM_024456, intron 1 of 5)	7800	NM_029307	75482	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	5.250	9.971	2.463	8.623	4.135	2.624	3.796	6.585	4.416	7.219	3.519	2.899	4.995	6.087	5.782	7.386	4.813	5.856	3.039	nan	3.000	6.873	nan	nan	8.969
2140	chr11	49072315	49075150	+	0	NA	intron (NM_010999, intron 1 of 5)	MT2A|LTR|ERVL	-2855	NM_001271677	15953	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	4.230	1.309	0.650	4.140	3.229	2.393	3.595	4.579	3.264	3.677	2.336	2.414	4.098	7.196	3.952	5.182	4.136	4.279	nan	3.362	1.820	nan	nan	4.552	4.275
12720	chr6	127542477	127544723	+	0	NA	Intergenic	Intergenic	-34375	NM_001033464	381812	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	1.898	nan	0.596	1.415	1.382	0.869	1.163	2.001	2.251	2.932	0.598	0.545	2.065	5.266	2.208	nan	2.967	1.753	0.476	0.550	0.546	0.597	0.423	0.339	2.258
1523	chr10	80869317	80882335	+	0	NA	Intergenic	B4A|SINE|B4	-3990	NM_001081688	432478	Mm.235302	NM_001081688	ENSMUSG00000059406	Tmprss9	Serase-1B	transmembrane protease, serine 9	protein-coding	4.988	3.520	0.936	8.911	2.586	1.352	3.788	5.157	3.828	5.244	4.337	1.774	3.866	4.094	nan	7.177	3.795	6.516	nan	2.830	2.666	6.300	3.066	2.484	9.907
8972	chr2	165058667	165061741	+	0	NA	intron (NM_170702, intron 1 of 7)	(TC)n|Simple_repeat|Simple_repeat	4568	NM_011611	21939	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	0.634	0.929	0.554	1.023	0.379	0.200	0.401	0.469	0.405	0.982	0.433	0.160	0.267	nan	0.649	1.051	0.656	nan	6.987	2.710	2.441	7.254	4.181	5.328	nan
5613	chr15	97648257	97664175	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	49606	NM_028003	71919	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	8.990	13.170	4.300	8.771	5.176	2.711	9.807	12.109	4.494	7.444	3.477	2.034	9.639	10.506	9.558	nan	7.569	8.862	2.484	2.182	2.286	3.148	1.989	1.799	11.643
6405	chr17	25180809	25182603	+	0	NA	Intergenic	Intergenic	-2855	NM_183150	214489	Mm.274433	NM_183150	ENSMUSG00000067722	BC003965	Ccsmst1	cDNA sequence BC003965	protein-coding	1.119	6.404	2.591	1.111	0.896	0.275	1.777	0.712	1.356	1.933	0.605	0.592	0.388	0.508	3.053	4.620	3.417	2.100	0.798	1.039	0.530	0.450	0.420	0.386	4.820
4667	chr14	54727957	54729003	+	0	NA	intron (NM_016972, intron 8 of 10)	B3|SINE|B2	-16306	NM_207131	110794	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	2.779	nan	0.247	1.265	1.171	0.297	3.254	2.374	2.037	1.763	2.275	1.605	1.988	3.054	2.563	2.728	1.626	2.912	0.821	0.581		0.733	0.181	0.274	2.896
3578	chr12	86824325	86828757	+	0	NA	Intergenic	Intergenic	58273	NM_145836	238330	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	7.656	2.688	1.372	6.343	3.161	1.756	5.850	8.025	4.214	5.484	3.028	3.043	7.631	7.687	8.860	10.431	7.839	6.283	2.105	0.911	0.999	2.084	1.668	1.153	9.507
15031	chr9	45108031	45109426	+	0	NA	TTS (NM_001005421)	TTS (NM_001005421)	-9148	NM_001014761	72821	Mm.229373	NM_001014761	ENSMUSG00000070304	Scn2b	2810451E09Rik|AI840361|Gm183	sodium channel, voltage-gated, type II, beta	protein-coding	5.591	5.654	2.577	2.052	2.212	1.151	1.872	6.666	2.465	3.354	2.595	1.804	2.250	4.208	nan	4.358	1.765	3.851	3.416	2.664	1.091	nan	3.625	3.110	5.003
7763	chr19	40766294	40774501	+	0	NA	Intergenic	Intergenic	-60882	NM_172839	240665	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	nan	1.132	0.568	3.897	3.119	1.578	0.955	nan	3.595	3.888	0.904	0.653	1.536	2.449	2.625	4.713	nan	4.612	0.313	0.666	0.239	0.306	0.288	0.162	5.534
15867	chrX	163058945	163060770	+	0	NA	intron (NR_038088, intron 3 of 5)	intron (NR_038088, intron 3 of 5)	-95258	NM_009789	12309	Mm.6891	NM_009789	ENSMUSG00000040808	S100g	AU042539|CABP1|CaBP-D9K|Cabp9k|Calb3	S100 calcium binding protein G	protein-coding	1.686	0.492	0.581	1.081	0.872	0.535	2.576	1.479	1.993	2.668	0.749	0.411	2.584	3.376	2.754	3.690	2.912	1.820	0.586	0.301	0.475	0.476	0.455	0.314	3.074
10822	chr4	141160853	141162495	+	0	NA	intron (NM_172518, intron 1 of 9)	intron (NM_172518, intron 1 of 9)	13752	NM_172518	213499	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	6.418	1.537	1.101	5.354	4.454	2.798	2.407	2.445	2.380	3.553	1.176	1.132	1.520	4.779	2.926	3.201	1.929	3.313	1.772	2.130	1.476	2.108	nan	1.378	4.324
6546	chr17	32159085	32162436	+	0	NA	intron (NM_008716, intron 2 of 32)	B3A|SINE|B2	6092	NM_008716	18131	Mm.439741	NM_008716	ENSMUSG00000038146	Notch3	AW229011|N3|hpbk	notch 3	protein-coding	4.215	2.580	1.237	4.425	3.341	1.825	5.535	5.466	5.721	6.573	6.130	3.467	4.557	5.432	4.446	7.041	6.522	5.886	1.548	1.602	1.049	1.848	1.166	0.889	4.151
13230	chr7	56666299	56668519	+	0	NA	Intergenic	Intergenic	427638	NM_021879	18431	Mm.137052	NM_021879	ENSMUSG00000030450	Oca2	D7H15S12|D7Icr28RN|D7Nic1|p|p<cas>	oculocutaneous albinism II	protein-coding	2.231	0.526	0.351	3.261	3.917	2.654	2.529	1.426	4.936	6.340	4.880	2.023	4.566	4.573	3.420	3.294	2.964	4.036	2.531	0.811	1.011	2.048	1.678	1.428	2.248
11528	chr5	106053841	106055770	+	0	NA	Intergenic	Intergenic	178237	NM_018759	54367	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	4.786	2.971	0.776	5.313	1.745	0.475	1.416	1.765	3.127	3.591	0.706	0.882	1.733	2.489	2.996	3.407	2.053	4.675	nan	0.697	0.477	0.774	0.620	0.264	3.944
8130	chr2	32197865	32199093	+	0	NA	intron (NM_172661, intron 9 of 29)	intron (NM_172661, intron 9 of 29)	-38204	NM_145145	99011	Mm.31192	NM_145145	ENSMUSG00000039254	Pomt1	AI505244	protein-O-mannosyltransferase 1	protein-coding	1.600	0.700	0.317	3.494	2.657	0.954	2.292	2.183	2.068	2.132	2.131	1.772	2.328	3.202	3.666	2.397	0.776	2.558	2.147	1.171	0.745	4.599	1.185	0.531	2.960
3040	chr11	117651786	117653355	+	0	NA	Intergenic	B1_Mur1|SINE|Alu	-1719	NM_198022	217351	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	4.040	17.909	6.397	6.040	3.712	2.992	10.134	12.575	3.523	9.194	8.966	3.539	8.223	12.967	9.618	11.261	8.374	7.527	4.359	nan	3.218	5.904	4.554	3.620	10.519
374	chr1	87500765	87504287	+	0	NA	intron (NM_001111314, intron 5 of 14)	intron (NM_001111314, intron 5 of 14)	7836	NM_019867	53972	Mm.435439	NM_019867	ENSMUSG00000026259	Ngef	Tims2|ephexin	neuronal guanine nucleotide exchange factor	protein-coding	1.081	10.783	9.080	1.141	0.488	0.298	0.625	0.434	0.834	0.596	0.609	0.480	0.532	0.279	0.638	1.269	1.368	0.876	1.203	0.910	1.134	nan	0.536	0.588	0.888
429	chr1	91431025	91435757	+	0	NA	intron (NM_011066, intron 13 of 22)	intron (NM_011066, intron 13 of 22)	-20169	NM_019479	55927	Mm.280029	NM_019479	ENSMUSG00000067071	Hes6	AI326893|bHLHb41	hairy and enhancer of split 6	protein-coding	1.240	0.589	0.388	1.586	1.005	0.451	0.709	1.207	0.760	0.892	0.495	0.275	0.323	0.923	0.726	1.046	0.528	1.106	3.144	1.806	1.169	nan	2.588	1.325	1.150
1306	chr10	57854344	57869980	+	0	NA	Intergenic	Intergenic	67618	NM_020561	57319	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	7.263	1.910	1.290	4.436	4.133	2.593	4.419	4.547	4.909	4.973	1.648	1.669	5.173	6.579	6.338	6.395	5.704	6.894	nan	2.488	1.668	4.193	1.591	1.143	6.223
14090	chr8	26197681	26201583	+	0	NA	Intergenic	Intergenic	41463	NM_199042	73754	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	4.452	nan	1.534	2.787	2.259	1.680	2.087	5.230	2.473	2.437	3.963	2.833	2.468	2.887	2.405	2.534	1.613	2.202	0.524	1.605	1.110	nan	0.733	0.427	2.964
9578	chr3	97704543	97706374	+	0	NA	intron (NM_001039376, intron 35 of 46)	intron (NM_001039376, intron 35 of 46)	-14896	NR_106084	102466229		NR_106084	ENSMUSG00000098381	Mir7225	Gm27499|mmu-mir-7225	microRNA 7225	ncRNA	6.100	4.836	1.201	6.891	2.738	1.459	6.370	6.086	4.621	5.211	nan	2.543	6.567	7.879	8.032	7.202	4.022	6.522	3.041	1.341	0.832	3.844	1.688	1.049	7.824
14245	chr8	63368514	63369856	+	0	NA	Intergenic	MTEa|LTR|ERVL-MaLR	417840	NM_023689	72902	Mm.334552	NM_023689	ENSMUSG00000054162	Spock3	2900045C01Rik|AI428471|mKIAA4039	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	protein-coding	4.545	6.309	6.058	3.211	3.993	3.148	4.858	4.832	2.112	3.534	2.855	2.582	3.251	3.399	3.117	3.945	5.844	2.455	nan	7.656	9.783	5.646	5.742	7.902	4.493
15375	chr9	89873162	89875165	+	0	NA	Intergenic	Intergenic	-35612	NM_011245	19417	Mm.44561	NM_011245	ENSMUSG00000032356	Rasgrf1	AI844718|CDC25|CDC25Mm|Gnrp|Grf1|Grfbeta|P190-A|Ras-GRF1|p190|p190RhoGEF	RAS protein-specific guanine nucleotide-releasing factor 1	protein-coding	2.866	1.305	0.469	1.598	2.145	1.823	3.203	3.659	2.470	2.503	0.770	1.024	4.258	4.833	3.102	2.917	3.699	4.008	1.068	1.078	1.199	0.926	0.689	0.713	2.889
1091	chr10	9030132	9033141	+	0	NA	Intergenic	ORR1A3|LTR|ERVL-MaLR	-145566	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	4.413	0.358	0.389	1.438	1.479	0.445	4.611	5.068	3.713	3.518	1.719	1.977	6.447	3.805	5.857	4.252	3.570	5.065	0.602	0.335	0.122	0.748	0.394	0.199	2.918
15076	chr9	50681050	50683478	+	0	NA	intron (NM_178118, intron 15 of 19)	intron (NM_178118, intron 15 of 19)	-22484	NM_145614	235339	Mm.285076	NM_145614	ENSMUSG00000000168	Dlat	6332404G05Rik|DLTA|PDC-E2	dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	protein-coding	0.816	0.823	0.618	0.607	0.212	0.252	0.217	0.421	0.453	0.441	0.861	2.652	0.273	0.396	nan	nan	0.645	0.581	5.334	5.052	2.791	nan	6.846	3.445	nan
15854	chrX	159264884	159267976	+	0	NA	intron (NM_148945, intron 1 of 21)	intron (NM_148945, intron 1 of 21)	10648	NM_001346675	110651	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	4.274	3.360	1.430	3.963	2.879	1.389	3.073	4.020	2.625	3.678	1.692	1.320	3.654	4.986	3.681	4.812	3.212	4.296	1.775	1.622	1.331	1.545	1.607	0.962	4.659
14503	chr8	97853839	97856606	+	0	NA	Intergenic	Intergenic	-1156665	NR_110579	100873092	Mm.414599	NR_110579	ENSMUSG00000089819	Gm15679	OTTMUSG00000025218	predicted gene 15679	ncRNA	7.837	9.878	2.408	12.178	4.206	2.398	4.557	8.770	5.362	10.016	6.348	2.828	7.829	8.701	9.783	11.500	5.199	9.255	4.459	2.260	3.353	8.848	2.215	2.847	15.262
9620	chr3	101938424	101941471	+	0	NA	Intergenic	Intergenic	-15494	NM_001039371	242126	Mm.90204	NM_001039371	ENSMUSG00000033147	Slc22a15	2610034P21Rik|4930477M19|A530052I06Rik|BB219042	solute carrier family 22 (organic anion/cation transporter), member 15	protein-coding	1.007	0.924	0.376	1.020	0.740	0.282	4.460	2.366	1.704	1.125	7.678	4.575	2.090	1.703	3.084	nan	1.778	2.280	1.528	0.769	0.483	1.272	2.014	1.596	2.080
9535	chr3	95392125	95394499	+	0	NA	intron (NR_015490, intron 1 of 1)	intron (NR_015490, intron 1 of 1)	9529	NR_015490	67654	Mm.75066	NR_015490	ENSMUSG00000105734	4930558C23Rik	-	RIKEN cDNA 4930558C23 gene	ncRNA	5.672	3.716	1.901	3.997	2.897	2.117	6.077	5.603	5.028	4.426	nan	3.568	7.638	5.384	4.433	5.344	5.133	6.201	4.170	2.397	1.263	2.771	3.001	2.093	3.834
4594	chr14	33326186	33330533	+	0	NA	intron (NM_153800, intron 4 of 10)	intron (NM_153800, intron 4 of 10)	82665	NM_001310452	26419	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	4.263	4.048	2.091	2.868	1.549	0.733	3.732	4.506	1.653	2.524	1.688	1.546	2.367	3.232	4.241	5.166	2.730	3.294	2.531	1.386	1.361	1.736	1.793	1.601	7.035
1962	chr11	8399837	8404717	+	0	NA	Intergenic	Intergenic	262258	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	nan	0.712	0.468	5.053	2.128	0.968	7.541	5.596	4.769	7.591	2.671	1.935	8.771	8.348	5.237	8.688	5.881	7.455	1.699	nan	0.795	1.786	0.841	0.992	8.683
10917	chr4	149927638	149936209	+	0	NA	intron (NM_029035, intron 1 of 2)	intron (NM_029035, intron 1 of 2)	23083	NM_029035	74646	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	2.298	7.534	4.836	2.280	1.669	1.334	1.242	2.033	2.202	1.920	1.162	1.314	1.452	1.899	1.932	2.020	1.427	1.945	5.543	2.695	2.843	7.841	3.263	3.510	2.248
9026	chr2	167542030	167543329	+	0	NA	3' UTR (NM_011427, exon 3 of 3)	3' UTR (NM_011427, exon 3 of 3)	4484	NM_011427	20613	Mm.2093	NM_011427	ENSMUSG00000042821	Snai1	Sna|Sna1|Snail|Snail1	snail family zinc finger 1	protein-coding	5.043	1.459	0.464	3.916	2.743	2.245	1.463	1.842	1.814	3.170	3.372	0.999	2.000	3.259	2.007	2.330	1.929	2.710	nan	1.114	1.263	0.814	0.617	0.639	3.545
489	chr1	107681093	107684149	+	0	NA	Intergenic	L1ME5|LINE|L1	92615	NM_001159748	20725	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	9.159	nan	0.629	3.336	2.198	1.232	6.139	5.285	4.032	4.183	2.982	2.170	7.781	6.056	5.953	11.597	8.069	6.278	2.143	2.578	1.482	3.105	1.991	1.570	8.633
9745	chr3	121303090	121307420	+	0	NA	intron (NM_024178, intron 2 of 3)	Lx|LINE|L1	13438	NM_024178	66789	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	4.678	1.383	0.918	4.186	8.831	4.719	3.306	5.445	4.579	4.775	3.363	3.347	3.317	7.951	4.926	3.003	2.277	5.361	2.253	1.827	1.015	2.581	nan	1.435	nan
1392	chr10	68355545	68357403	+	0	NA	Intergenic	Intergenic	-35332	NR_045357	75148	Mm.23505	NR_045357		4930545H06Rik	-	RIKEN cDNA 4930545H06 gene	ncRNA	6.964	1.283	0.596	4.111	1.682	0.543	2.904	5.616	3.968	3.552	1.560	1.458	4.651	5.747	5.831	6.493	4.753	5.111	1.301	1.046	0.599	1.722	0.886	0.350	4.894
1080	chr10	7445853	7447392	+	0	NA	intron (NM_029975, intron 4 of 5)	B1F|SINE|Alu	26855	NM_029975	77777	Mm.442442	NM_029975	ENSMUSG00000079685	Ulbp1	A430108B07Rik|MULT1	UL16 binding protein 1	protein-coding	13.990	10.065	8.967	6.051	11.244	8.510	7.046	8.741	6.053	7.466	7.143	5.908	5.055	8.838	5.433	6.753	8.969	5.134	4.498	5.982	4.934	3.773	7.628	7.116	9.560
4724	chr14	60089980	60091413	+	0	NA	Intergenic	Intergenic	-3862	NM_015803	50769	Mm.319599	NM_015803	ENSMUSG00000021983	Atp8a2	AI415030|Atpc1b|agil|wl	ATPase, aminophospholipid transporter-like, class I, type 8A, member 2	protein-coding	3.439	nan	1.043	1.062	1.680	0.893	2.103	5.799	2.545	2.858	2.230	1.731	2.187	3.775	2.261	1.985	1.784	2.230	0.845	0.738	0.452	0.370	1.021	0.952	1.737
2819	chr11	101947971	101949761	+	0	NA	Intergenic	Intergenic	-3555	NR_045806	73887	Mm.159084	NR_045806	ENSMUSG00000071818	4930417O22Rik	-	RIKEN cDNA 4930417O22 gene	ncRNA	3.704	5.659	2.257	2.893	2.192	1.119	2.503	3.873	1.839	3.186	1.128	0.958	1.780	3.641	3.144	2.943	nan	2.515	3.899	nan	2.382	5.550	4.596	3.296	6.421
10364	chr4	108132008	108135370	+	0	NA	Intergenic	MER67D|LTR|ERV1	-15142	NM_011327	20280	Mm.379011	NM_011327	ENSMUSG00000028603	Scp2	AA409774|AA409893|C76618|C79031|NSL-TP|SCP-2|SCP-X|SCPX|ns-LTP	sterol carrier protein 2, liver	protein-coding	6.265	13.847	6.880	7.952	5.012	4.608	6.530	nan	4.287	8.628	2.983	3.581	5.874	5.872	5.895	7.045	4.674	6.902	6.858	3.658	6.980	7.342	4.795	6.688	9.324
9120	chr2	181193443	181194699	+	0	NA	Intergenic	B1_Mur2|SINE|Alu	6728	NM_025598	66496	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	2.882	6.681	0.813	8.658	1.112	0.564	1.562	1.318	1.607	8.335	1.492	1.194	2.015	2.778	4.373	4.899	0.778	nan	2.114	0.237	2.037	5.107	0.997	2.230	8.254
2233	chr11	55223246	55234060	+	0	NA	intron (NM_153139, intron 10 of 10)	ID_B1|SINE|B4	24313	NM_153139	215335	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	8.173	1.963	0.829	7.323	6.914	4.237	7.358	6.603	5.600	7.067	4.491	2.166	6.239	8.631	7.428	8.476	4.916	8.257	nan	1.345	1.116	1.341	0.913	0.762	7.979
622	chr1	134266996	134272612	+	0	NA	Intergenic	B1_Mur2|SINE|Alu	-20200	NM_031189	17928	Mm.16528	NM_031189	ENSMUSG00000026459	Myog	MYF4|bHLHc3|myo	myogenin	protein-coding	3.883	2.387	0.831	6.227	0.927	0.417	1.678	1.777	2.429	2.178	2.058	1.805	1.854	2.487	2.936	3.677	1.948	4.547	4.912	2.459	1.341	5.556	3.339	2.084	3.299
5389	chr15	77749018	77751596	+	0	NA	intron (NM_001081970, intron 3 of 3)	ID2|SINE|ID	4922	NM_001081970	239552	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	4.218	nan	0.772	3.789	2.620	1.462	5.140	7.325	3.437	2.433	nan	1.907	4.331	nan	4.159	4.532	nan	3.933	1.029	1.310	0.761	nan	1.017	0.493	4.449
6653	chr17	45821846	45841940	+	0	NA	Intergenic	RSINE1|SINE|B4	-98049	NM_028164	72240	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	4.406	1.760	0.735	4.471	4.148	2.615	9.266	5.946	3.846	5.379	1.983	1.494	5.140	nan	6.307	8.796	nan	5.418	1.502	0.978	1.112	1.742	1.106	0.982	6.691
6200	chr16	91593267	91599104	+	0	NA	intron (NM_030018, intron 1 of 6)	intron (NM_030018, intron 1 of 6)	1495	NM_030018	77975	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	4.487	4.671	2.128	4.330	3.219	2.080	4.291	4.453	3.038	5.811	2.370	1.042	5.672	5.607	4.627	6.967	4.356	4.916	2.249	1.557	1.931	nan	1.782	1.913	7.198
970	chr1	184017699	184023112	+	0	NA	Intergenic	B1_Mm|SINE|Alu	13593	NM_028516	73363	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	2.457	1.144	0.425	1.867	0.996	0.685	1.652	5.233	1.968	1.617	7.591	3.904	5.304	2.644	3.275	2.725	3.022	1.495	0.791	0.404	0.507	1.155	0.427	0.389	2.213
9699	chr3	108334344	108339905	+	0	NA	intron (NM_001271599, intron 8 of 20)	L2a|LINE|L2	-27787	NM_026831	68753	Mm.75201	NM_026831	ENSMUSG00000068745	Mybphl	1110037P11Rik	myosin binding protein H-like	protein-coding	5.789	0.812	0.481	3.188	1.809	0.986	8.103	7.561	2.835	3.197	2.186	2.913	8.451	6.729	nan	5.687	7.625	3.377	3.532	3.090	1.784	4.360	5.248	4.126	6.260
2256	chr11	59474837	59478540	+	0	NA	Intergenic	Intergenic	-4214	NM_178417	237775	Mm.339604	NM_178417	ENSMUSG00000054519	Zfp867	-	zinc finger protein 867	protein-coding	8.829	4.711	1.035	9.125	5.617	3.420	6.924	7.668	7.308	11.514	8.722	4.390	7.404	10.531	7.801	8.479	6.159	9.752	nan	3.143	2.434	4.874	3.656	3.210	9.867
10639	chr4	132685513	132687824	+	0	NA	intron (NM_210071, intron 6 of 16)	intron (NM_210071, intron 6 of 16)	45878	NM_201368	381560	Mm.44558	NM_201368	ENSMUSG00000037752	Xkr8	4931440N07Rik|AI597014|Gm1031|XRG8|mXkr8	X-linked Kx blood group related 8	protein-coding	13.520	17.489	4.659	18.420	5.055	2.518	9.755	11.027	9.595	14.914	9.422	5.144	10.378	14.001	13.409	15.381	6.730	13.966	8.685	2.905	2.581	10.540	3.882	3.564	17.180
5718	chr15	102019044	102037357	+	0	NA	promoter-TSS (NM_010664)	promoter-TSS (NM_010664)	-16	NM_010664	16668	Mm.22479	NM_010664	ENSMUSG00000023043	Krt18	CK18|K18|Krt1-18	keratin 18	protein-coding	4.045	2.863	1.200	3.317	1.996	1.512	6.611	10.935	2.902	3.591	1.730	1.447	6.130	4.474	4.308	nan	5.450	3.884	2.323	1.908	1.932	2.287	3.144	3.504	4.017
5768	chr16	8732940	8734898	+	0	NA	intron (NM_001003918, intron 1 of 30)	intron (NM_001003918, intron 1 of 30)	4423	NM_001003918	252870	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	1.270	6.846	5.874	1.354	3.270	2.493	nan	3.034	1.934	1.435	1.576	1.573	0.988	0.876	1.634	1.451	1.416	1.675	1.669	1.485	2.288	1.055	2.477	2.821	1.948
2057	chr11	31570793	31572352	+	0	NA	Intergenic	L1_Mur3|LINE|L1	100290	NM_001024919	69556	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	3.240	6.054	1.464	5.553	3.102	3.103	3.514	2.685	2.046	6.326	2.144	2.596	3.606	4.925	3.606	5.141	2.844	3.942	2.516	0.956	1.491	2.105	1.195	2.313	5.285
12184	chr6	39235400	39237791	+	0	NA	Intergenic	ORR1C2|LTR|ERVL-MaLR	-29822	NM_001033430	338523	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|ENSMUSG00000073143|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	2.272	3.583	1.529	3.613	3.496	2.390	2.415	4.488	2.690	2.542	3.705	3.441	1.533	3.178	3.470	nan	1.970	nan	nan	4.258	4.766	6.813	6.815	6.021	nan
15737	chrX	68825927	68829489	+	0	NA	Intergenic	L1_Mus3|LINE|L1	65345	NM_001098842	627927	Mm.391264	NM_001098842	ENSMUSG00000056815	Gm6812	EG627927	predicted gene 6812	protein-coding	2.968	0.603	0.574	1.049	3.285	2.896	4.064	2.661	2.555	3.067	0.726	0.506	4.173	4.275	2.704	3.377	3.069	2.468	0.580	0.851	0.904	0.460	0.588	0.559	2.858
9594	chr3	100485624	100487172	+	0	NA	intron (NM_001142952, intron 1 of 1)	intron (NM_001142952, intron 1 of 1)	2794	NM_001142952	74645	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	4.764	2.658	1.435	3.766	4.612	1.797	3.970	4.268	3.612	3.363	4.490	3.670	3.738	3.801	3.281	2.559	4.517	3.369	5.207	5.400	2.504	3.467	7.971	4.968	2.944
13782	chr7	135380387	135383545	+	0	NA	Intergenic	Intergenic	-28401	NM_183193	270004	Mm.132547	NM_183193	ENSMUSG00000048377	Foxi2	B130055A05Rik	forkhead box I2	protein-coding	7.325	9.626	2.056	9.276	2.477	1.188	7.343	7.686	4.979	8.949	5.350	2.154	9.082	9.223	9.217	9.527	5.385	8.528	3.340	1.115	0.991	4.089	1.392	0.960	13.062
12305	chr6	71581259	71583948	+	0	NA	Intergenic	Intergenic	38749	NM_025783	66700	Mm.181278	NM_025783	ENSMUSG00000053119	Chmp3	25.1|4921505F14Rik|9130011K15Rik|CGI-49|D6Ertd286e|NEDF|Vps24	charged multivesicular body protein 3	protein-coding	9.088	9.920	3.397	8.745	8.018	5.291	12.900	13.486	5.928	12.954	6.896	5.282	9.304	13.092	10.071	11.857	9.560	8.891	5.372	3.053	3.236	5.382	4.933	5.385	13.468
10567	chr4	129299144	129302689	+	0	NA	intron (NM_023485, intron 2 of 4)	B1_Mur1|SINE|Alu	13295	NM_023485	68828	Mm.132243	NM_023485	ENSMUSG00000001333	Sync	1110057H03Rik|SNIP4	syncoilin	protein-coding	3.619	4.554	1.022	7.987	3.111	1.430	2.576	2.450	2.447	3.300	1.990	0.773	1.636	3.534	3.516	3.313	1.611	3.214	3.685	2.581	1.215	5.732	2.545	1.691	4.025
14447	chr8	90872376	90886952	+	0	NA	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	50829	NM_177224	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	5.335	2.521	1.186	5.333	4.368	2.958	4.686	3.250	nan	8.118	1.712	1.495	10.360	8.528	6.734	8.394	6.817	7.482	nan	1.565	1.177	2.120	0.961	1.006	7.174
8314	chr2	68268379	68277126	+	0	NA	intron (NM_016866, intron 14 of 17)	intron (NM_016866, intron 14 of 17)	168080	NM_020283	26877	Mm.226435	NM_020283	ENSMUSG00000034780	B3galt1	beta3Gal-T1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	protein-coding	6.344	2.712	1.126	3.297	2.512	0.971	8.555	9.177	5.712	6.525	4.920	1.023	8.098	8.593	8.619	9.089	8.320	7.474	1.032	0.830	0.385	1.153	0.836	0.524	8.588
2361	chr11	68907015	68914339	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	9088	NR_003373	100034726	Mm.3229	NR_003373	ENSMUSG00000062353	Gm15772	ENSMUSG00000062353|OTTMUSG00000026108	ribosomal protein L26 pseudogene	pseudo	15.516	13.215	4.691	14.793	12.886	7.578	9.494	11.919	10.476	14.099	12.173	5.602	9.618	18.201	10.966	14.614	11.269	12.732	4.900	5.228	3.338	8.149	nan	3.743	nan
10640	chr4	132691619	132694891	+	0	NA	intron (NM_211357, intron 6 of 14)	intron (NM_211357, intron 6 of 14)	39291	NM_201368	381560	Mm.44558	NM_201368	ENSMUSG00000037752	Xkr8	4931440N07Rik|AI597014|Gm1031|XRG8|mXkr8	X-linked Kx blood group related 8	protein-coding	1.601	1.314	1.664	1.645	3.061	3.455	1.128	1.140	0.803	1.043	0.645	0.748	0.407	1.108	nan	0.684	1.120	0.845	1.063	2.132	1.760	0.655	1.420	1.770	0.460
10901	chr4	149154465	149157341	+	0	NA	intron (NM_001081274, intron 8 of 12)	intron (NM_001081274, intron 8 of 12)	10804	NM_001081274	110208	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	4.362	nan	1.076	3.430	4.310	2.654	3.138	4.220	2.345	2.917	5.569	2.525	2.443	4.730	3.698	3.333	2.553	2.710	1.890	1.989	0.913	3.301	3.075	2.351	3.571
8920	chr2	160451298	160455214	+	0	NA	Intergenic	Intergenic	-86191	NM_010658	16658	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	nan	9.978	8.213	1.063	1.626	1.193	1.049	1.676	nan	nan	1.314	0.548	nan	nan	1.023	1.321	1.468	nan	nan	1.067	1.126	0.588	0.606	0.691	nan
5089	chr15	27948984	27950109	+	0	NA	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	76302	NM_001081302	223435	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	3.776	0.757	0.086	2.382	2.569	0.697	3.631	5.729	2.076	1.628	1.308	0.812	5.457	3.909	3.570	3.360	4.304	4.200	1.943	1.646	0.458	2.480	0.918	0.371	2.449
14561	chr8	108836618	108848293	+	0	NA	intron (NM_007496, intron 3 of 9)	intron (NM_007496, intron 3 of 9)	-94405	NR_037295	100526511		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0.700	1.215	0.812	0.668	0.294	0.117	0.475	1.619	0.862	0.659	0.405	0.861	0.556	0.495	0.896	1.053	0.726	1.054	4.062	2.542	1.182	7.478	2.913	1.885	0.847
7348	chr18	67404084	67406195	+	0	NA	3' UTR (NM_027130, exon 17 of 17)	3' UTR (NM_027130, exon 17 of 17)	14408	NM_026473	67951	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	8.570	16.404	6.039	10.143	2.307	1.253	7.109	6.784	5.986	10.586	6.429	4.872	9.292	7.662	8.868	10.191	7.483	11.150	6.569	2.458	3.174	6.200	3.485	3.637	15.433
2563	chr11	85305070	85306560	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	-5439	NM_016910	53892	Mm.45609	NM_016910	ENSMUSG00000020525	Ppm1d	AV338790|Wip1	protein phosphatase 1D magnesium-dependent, delta isoform	protein-coding	4.677	0.929	0.507	4.968	2.333	0.661	1.861	1.335	3.737	3.537	3.524	3.071	1.357	3.182	1.769	2.705	1.898	3.661	1.642	1.656	0.909	3.736	0.952	0.864	1.739
3086	chr11	119683045	119685461	+	0	NA	intron (NM_028898, intron 3 of 33)	intron (NM_028898, intron 3 of 33)	81348	NM_028898	74370	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	1.075	nan	0.611	0.878	0.716	0.510	nan	nan	1.281	nan	1.554	2.857	0.498	0.931	0.526	0.558	0.588	nan	2.112	nan	1.291	1.468	5.354	2.311	0.676
4749	chr14	63766575	63769905	+	0	NA	intron (NM_173393, intron 1 of 2)	intron (NM_173393, intron 1 of 2)	41051	NR_030611	100124452		NR_030611	ENSMUSG00000076049	Mir598	Mirn598|mir-598|mmu-mir-598	microRNA 598	ncRNA	5.132	1.383	0.999	4.039	4.725	1.868	7.537	8.381	3.869	5.084	2.105	1.043	6.771	11.346	7.726	7.468	3.564	5.289	1.195	nan	0.890	0.918	0.992	0.714	6.759
12292	chr6	66983787	66988266	+	0	NA	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	-50573	NR_040278	320172	Mm.449039	NR_040278	ENSMUSG00000087231	E230016M11Rik	-	RIKEN cDNA E230016M11 gene	ncRNA	6.085	5.937	2.405	5.211	3.820	2.553	7.324	6.930	3.586	6.077	5.408	1.864	6.565	9.672	8.301	10.232	7.037	6.573	2.757	2.220	2.011	3.634	2.003	1.996	8.999
7208	chr18	42433416	42436311	+	0	NA	Intergenic	Intergenic	40266	NM_138945	18998	Mm.488204	NM_138945	ENSMUSG00000024497	Pou4f3	Brn3.1|Brn3c|ddl|dreidel	POU domain, class 4, transcription factor 3	protein-coding	8.227	6.318	3.528	5.702	6.405	4.058	6.636	7.434	3.932	6.475	5.505	3.418	5.557	6.867	4.768	nan	5.564	6.011	3.529	4.770	4.714	3.984	5.117	5.555	9.426
6861	chr17	75704839	75707881	+	0	NA	Intergenic	Intergenic	-154414	NM_133747	72722	Mm.24641	NM_133747	ENSMUSG00000002017	Fam98a	2810405J04Rik|AL024114	family with sequence similarity 98, member A	protein-coding	2.354	1.131	0.776	1.318	0.383	0.060	nan	4.629	nan	1.508	5.880	4.201	3.304	1.709	2.529	2.651	4.867	2.408	0.634	0.721	0.508	0.849	0.671	0.403	1.310
14844	chr9	3034944	3037427	+	0	NA	Intergenic	GSAT_MM|Satellite|Satellite	2558	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	nan	nan	26.166	12.939	16.991	22.347	13.371	nan	14.284	10.932	12.354	18.338	9.778	8.225	5.016	nan	nan	nan	nan	17.771	37.121	6.140	16.884	27.121	nan
4333	chr13	101280414	101289786	+	0	NA	intron (NR_045846, intron 5 of 5)	ORR1F|LTR|ERVL-MaLR	30781	NR_045846	71174	Mm.399537	NR_045846	ENSMUSG00000100733	4933416M06Rik	-	RIKEN cDNA 4933416M06 gene	ncRNA	4.918	0.883	0.556	2.565	3.824	2.793	6.174	5.541	2.459	2.293	3.286	1.539	5.466	6.406	5.468	5.344	nan	nan	0.853	0.853	0.753	0.687	0.996	0.884	7.471
14407	chr8	86595537	86597374	+	0	NA	Intergenic	Intergenic	-27588	NM_025827	66887	Mm.324550	NM_025827	ENSMUSG00000047866	Lonp2	1300002A08Rik|AU015403|Lonp	lon peptidase 2, peroxisomal	protein-coding	2.947	2.895	1.009	3.470	1.732	1.103	1.151	2.343	nan	1.723	0.878	0.613	1.538	4.176	1.860	2.597	1.362	2.392	nan	0.825	0.542	1.211	0.687	0.611	4.252
11728	chr5	125400628	125405423	+	0	NA	Intergenic	RLTR26_Mus|LTR|ERVK	-13008	NM_019639	22190	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	1.854	4.021	2.969	1.366	1.543	1.007	1.665	1.849	1.202	nan	2.362	1.977	1.242	1.360	nan	1.253	nan	nan	6.595	2.673	3.517	3.708	7.447	8.460	nan
4461	chr14	9046150	9049954	+	0	NA	Intergenic	IAPEz-int|LTR|ERVK	381662	NR_045968	74859	Mm.84041	NR_045968	ENSMUSG00000097898	4930455B14Rik	1700027C12Rik	RIKEN cDNA 4930455B14 gene	ncRNA	5.729	3.346	1.277	4.105	2.830	1.945	3.782	7.342	3.060	6.839	3.105	1.576	4.917	7.196	5.932	6.572	4.906	4.658	1.943	1.386	1.551	2.365	2.151	2.653	7.832
270	chr1	69476317	69481668	+	0	NA	Intergenic	Intergenic	206968	NM_011770	22779	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	1.390	0.867	0.796	0.292	0.196	0.138	1.138	2.524	0.958	0.594	9.300	3.621	1.198	nan	1.746	nan	nan	nan	0.482	0.488	0.412	0.493	0.442	0.257	0.218
12218	chr6	50136081	50139024	+	0	NA	intron (NM_019939, intron 1 of 12)	intron (NM_019939, intron 1 of 12)	27311	NM_001164733	56524	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	2.663	2.911	2.035	2.119	2.214	1.324	2.171	2.605	2.109	1.851	0.876	0.740	2.833	3.090	2.226	3.422	3.540	nan	nan	2.937	1.358	2.100	6.583	3.488	2.085
6870	chr17	79693192	79697094	+	0	NA	Intergenic	Intergenic	19898	NM_009994	13078	Mm.214016	NM_009994	ENSMUSG00000024087	Cyp1b1	CP1B|P4501b1	cytochrome P450, family 1, subfamily b, polypeptide 1	protein-coding	4.488	1.071	0.699	3.199	5.570	2.912	12.677	nan	3.309	3.207	2.680	1.138	5.266	6.403	6.267	5.696	5.278	3.882	0.636	0.573	0.392	0.468	0.625	0.434	5.887
15413	chr9	99039171	99042022	+	0	NA	intron (NM_029094, intron 23 of 23)	RSINE1|SINE|B4	-4906	NM_001080776	382097	Mm.293727	NM_001080776	ENSMUSG00000044860	Gm1123	AV052824|CLSP	predicted gene 1123	protein-coding	7.307	5.524	1.867	7.212	3.408	2.821	5.071	5.838	4.818	10.589	5.322	2.820	6.851	7.855	6.407	7.477	4.738	7.607	2.617	2.293	2.987	4.030	2.691	3.614	12.568
6791	chr17	66255527	66257338	+	0	NA	Intergenic	Intergenic	132912	NM_001003919	320209	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	2.694	3.519	1.710	5.714	3.293	2.228	5.989	4.911	4.491	4.327	7.347	1.591	2.166	4.226	4.990	4.841	4.067	5.325	0.693	0.944	1.283	0.819	1.095	0.943	4.213
13467	chr7	105529658	105536652	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-21205	NM_011421	20597	Mm.4628	NM_011421	ENSMUSG00000037049	Smpd1	A-SMase|ASM|Zn-SMase|aSMase	sphingomyelin phosphodiesterase 1, acid lysosomal	protein-coding	3.190	0.745	0.331	2.520	2.323	1.256	3.576	9.775	2.732	3.667	0.941	1.626	2.865	6.388	3.532	2.975	1.859	3.566	nan	0.533	0.357	0.641	0.297	0.215	3.491
8180	chr2	35119024	35129687	+	0	NA	intron (NM_012018, intron 7 of 43)	intron (NM_012018, intron 7 of 43)	-7879	NM_001290635	26920	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	8.786	1.759	0.502	5.430	5.225	2.542	5.729	7.755	4.263	nan	5.671	2.680	7.155	9.373	6.366	8.830	5.485	7.736	1.475	1.215	0.772	1.999	1.235	0.939	11.497
6517	chr17	30268355	30275760	+	0	NA	intron (NM_172618, intron 9 of 11)	intron (NM_172618, intron 9 of 11)	-15522	NR_105839	102465223		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA	4.121	1.069	0.806	2.360	3.157	1.517	6.024	4.266	3.072	3.088	1.232	1.035	4.109	4.024	4.695	4.292	3.817	3.768	1.372	1.781	0.990	2.367	1.841	0.987	4.402
14190	chr8	45883975	45888192	+	0	NA	intron (NM_016798, intron 1 of 6)	intron (NM_016798, intron 1 of 6)	598	NM_016798	53318	Mm.282900	NM_016798	ENSMUSG00000031636	Pdlim3	AI463105|ALP|Actn2lp	PDZ and LIM domain 3	protein-coding	3.701	1.119	0.767	1.039	0.691	0.450	4.184	5.926	1.507	1.251	9.165	3.308	5.395	3.040	3.948	5.496	3.705	2.775	0.670	1.191	0.547	0.928	0.515	0.550	1.568
2840	chr11	102927575	102930476	+	0	NA	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-3901	NM_197959	70218	Mm.32084	NM_197959	ENSMUSG00000051378	Kif18b	3000004C01Rik	kinesin family member 18B	protein-coding	3.700	nan	0.400	3.987	1.484	0.857	3.313	3.031	4.799	4.596	2.959	1.311	3.690	5.627	6.203	8.155	2.972	7.152	0.577	nan	0.273	0.772	nan	nan	7.897
13622	chr7	119623444	119628239	+	0	NA	intron (NM_054094, intron 2 of 13)	Lx|LINE|L1	8013	NM_054094	117147	Mm.427560	NM_054094	ENSMUSG00000033533	Acsm1	Acas3|Bucs1|Macs	acyl-CoA synthetase medium-chain family member 1	protein-coding	2.246	0.638	0.410	1.701	1.909	1.056	2.024	5.476	1.282	1.396	1.234	2.144	1.976	nan	2.367	2.204	2.022	2.759	1.153	0.740	0.815	0.979	0.925	0.605	1.803
5037	chr15	10398871	10400296	+	0	NA	intron (NM_001031851, intron 12 of 13)	intron (NM_001031851, intron 12 of 13)	41004	NM_001031851	268782	Mm.482244	NM_001031851	ENSMUSG00000089678	Agxt2	AI303810|AI663818	alanine-glyoxylate aminotransferase 2	protein-coding	5.128	7.685	1.729	7.727	3.328	2.499	4.538	7.517	3.140	11.200	3.295	2.676	6.215	4.995	6.917	6.262	3.459	7.063	4.266	1.926	3.828	5.220	3.551	5.003	9.695
1602	chr10	92765487	92774465	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-47558	NM_008682	17997	Mm.2998	NM_008682	ENSMUSG00000019988	Nedd1	-	neural precursor cell expressed, developmentally down-regulated gene 1	protein-coding	5.622	7.491	4.057	5.719	4.245	2.576	2.570	2.676	3.625	5.469	5.503	3.063	2.382	4.801	3.159	3.428	2.324	nan	1.591	2.215	1.657	nan	nan	1.197	4.733
4226	chr13	64335994	64339962	+	0	NA	Intergenic	L1MB4|LINE|L1	-25268	NM_025370	66129	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	1.355	1.193	0.692	1.207	0.892	0.330	1.132	0.609	0.811	0.915	0.568	0.478	0.804	1.171	0.574	nan	0.430	1.079	6.225	3.907	3.201	3.777	7.054	5.538	0.891
2007	chr11	20231910	20233920	+	0	NA	intron (NM_172260, intron 5 of 6)	intron (NM_172260, intron 5 of 6)	16509	NM_172260	216543	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	5.207	6.568	1.844	8.374	1.338	0.697	5.373	6.050	3.956	5.775	5.728	3.857	6.372	5.984	7.333	8.477	3.921	7.208	5.438	1.466	1.284	7.820	2.573	2.019	9.583
9673	chr3	106587680	106593685	+	0	NA	Intergenic	MT2_Mm|LTR|ERVL	-42880	NM_133869	99712	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	3.958	10.456	4.781	3.344	1.545	0.633	2.869	2.376	4.151	3.053	7.258	5.672	3.304	3.501	nan	2.023	2.381	3.059	1.058	1.312	0.715	0.473	0.360	0.258	1.312
5139	chr15	38360414	38363658	+	0	NA	Intergenic	Intergenic	-61325	NM_001289471	21847	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	4.303	0.731	0.676	3.817	3.200	2.596	5.849	12.170	3.361	3.680	3.247	2.503	8.189	6.536	5.120	6.369	4.857	4.343	2.930	1.740	1.579	nan	2.072	2.152	4.126
12374	chr6	85378567	85380155	+	0	NA	Intergenic	Intergenic	-4727	NM_001003955	52055	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	2.949	1.367	0.414	1.883	1.121	1.495	2.892	2.035	2.087	1.953	0.573	0.488	3.334	4.818	2.621	4.410	5.550	2.354	nan	0.517	0.308	0.357	0.539	0.268	2.731
9727	chr3	116296935	116298282	+	0	NA	intron (NM_001080818, intron 12 of 15)	URR1A|DNA|hAT-Charlie	-44124	NM_022427	64378	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	5.620	11.794	3.231	7.517	2.583	0.824	6.171	5.057	3.270	5.248	3.585	2.645	5.134	5.106	6.158	6.979	3.950	7.847	4.279	1.799	1.871	5.540	nan	2.618	10.182
5341	chr15	75722208	75725868	+	0	NA	Intergenic	Intergenic	19750	NM_008164	14787	Mm.57052	NM_008164	ENSMUSG00000022580	Rhpn1	BB023497|Grbp|Rhophilin|mKIAA1929	rhophilin, Rho GTPase binding protein 1	protein-coding	nan	nan	0.545	nan	0.935	0.664	3.716	6.442	2.253	nan	nan	1.248	4.082	nan	3.906	3.980	3.578	3.668	1.953	1.531	1.019	5.411	1.598	1.407	4.537
1399	chr10	68861188	68863479	+	0	NA	Intergenic	L1MC1|LINE|L1	138587	NM_177794	327766	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	7.998	0.392	0.198	7.456	3.514	1.782	5.729	3.212	5.175	11.250	1.632	2.176	4.986	6.798	7.756	11.015	6.029	9.112	1.799	1.429	1.426	3.202	1.778	1.968	16.163
7626	chr19	21200650	21202796	+	0	NA	Intergenic	RSINE1|SINE|B4	-70555	NM_009551	22682	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	3.458	1.344	0.778	2.244	2.094	0.783	1.196	3.689	2.106	2.124	5.248	1.522	1.095	2.086	1.753	1.917	1.413	nan	0.958	0.740	0.567	1.716	0.942	0.634	1.448
6395	chr17	24590988	24592873	+	0	NA	exon (NM_013630, exon 38 of 46)	exon (NM_013630, exon 38 of 46)	40697	NM_011647	22084	Mm.30435	NM_011647	ENSMUSG00000002496	Tsc2	Nafld|Tcs2	tuberous sclerosis 2	protein-coding	8.809	9.062	2.829	7.360	6.056	5.225	10.697	6.399	4.113	8.148	4.710	2.672	8.427	10.207	7.930	9.468	6.532	6.533	4.927	3.349	5.451	5.086	4.126	4.629	10.801
7540	chr19	9114137	9115981	+	0	NA	intron (NM_025610, intron 5 of 6)	intron (NM_025610, intron 5 of 6)	20507	NM_025610	66514	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	5.970	7.825	6.887	4.112	8.043	8.374	4.749	5.951	4.937	3.493	2.793	4.133	3.087	6.074	3.362	4.542	6.318	5.743	0.855	1.645	2.773	1.306	1.739	2.265	4.624
12727	chr6	127861312	127865184	+	0	NA	Intergenic	Intergenic	-24374	NM_026743	68498	Mm.174368	NM_026743	ENSMUSG00000030351	Tspan11	1110014F12Rik|AU067806	tetraspanin 11	protein-coding	1.697	nan	0.338	1.196	2.730	1.545	2.550	2.998	2.080	2.780	0.508	0.291	3.278	5.324	2.801	5.208	2.235	2.172	0.398	0.569	0.443	0.271	0.492	0.380	2.082
103	chr1	36943895	36950855	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	-7848	NM_018872	56030	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	4.495	1.201	1.234	2.221	1.868	0.901	3.861	3.774	2.852	2.546	1.523	1.783	5.207	3.620	3.790	5.601	5.573	3.711	1.013	1.097	0.658	0.747	1.142	0.799	2.689
13306	chr7	77514374	77516608	+	0	NA	Intergenic	Intergenic	1062347	NM_008746	18213	Mm.33496	NM_008746	ENSMUSG00000059146	Ntrk3	AW125844|Ntrk3_tv3|TrkC	neurotrophic tyrosine kinase, receptor, type 3	protein-coding	3.539	1.485	0.517	5.135	1.808	1.467	1.512	1.110	1.362	2.322	1.031	1.082	0.732	2.087	2.020	1.953	1.170	1.688	0.950	1.214	1.223	0.837	0.751	0.555	nan
6859	chr17	75067756	75071563	+	0	NA	intron (NM_019919, intron 3 of 33)	intron (NM_019919, intron 3 of 33)	64130	NM_019919	268977	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	2.882	1.398	0.999	3.167	0.883	0.499	nan	nan	nan	3.413	0.949	0.922	4.067	5.146	3.804	5.334	5.692	2.878	1.998	1.459	0.654	1.357	1.342	0.787	3.861
8228	chr2	48236981	48238049	+	0	NA	Intergenic	Intergenic	-576594	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	6.695	4.680	3.149	4.354	1.880	1.006	5.039	6.666	3.833	4.141	1.758	1.566	6.305	3.569	4.055	4.851	4.123	5.509	1.790	1.844	0.651	1.432	1.564	0.563	4.884
5641	chr15	99327272	99347337	+	0	NA	intron (NM_001310622, intron 2 of 25)	intron (NM_001310622, intron 2 of 25)	33178	NM_001310623	22379	Mm.29043	NM_011711	ENSMUSG00000023008	Fmnl3	2700073B04Rik|FBP11|Wbp3|mKIAA2014	formin-like 3	protein-coding	6.066	0.772	0.339	4.680	3.260	1.876	8.401	10.791	5.371	7.565	3.986	4.425	9.798	10.313	7.738	8.671	5.810	7.538	2.910	2.012	1.418	4.028	2.006	1.660	9.722
13348	chr7	86475357	86481974	+	0	NA	Intergenic	L1_Mus4|LINE|L1	10884	NM_001011751	257905	Mm.377294	NM_001011751	ENSMUSG00000062878	Olfr298	MOR219-4	olfactory receptor 298	protein-coding	4.763	1.517	1.011	4.963	7.269	5.500	6.224	8.653	7.438	7.165	4.910	4.469	7.415	8.341	6.787	5.574	4.186	8.576	2.146	1.406	1.262	nan	1.701	1.566	4.631
8875	chr2	156299482	156301775	+	0	NA	intron (NM_172674, intron 15 of 17)	B3A|SINE|B2	-11845	NM_027585	70873	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	6.285	1.534	0.455	6.551	2.777	2.342	7.262	6.805	nan	7.939	2.685	2.192	5.743	5.483	6.987	7.721	4.958	6.667	nan	1.607	1.553	4.425	1.529	1.975	12.109
3393	chr12	71086387	71090252	+	0	NA	intron (NM_001081195, intron 23 of 23)	intron (NM_001081195, intron 23 of 23)	-23109	NM_029227	75266	Mm.402075	NM_029227	ENSMUSG00000021078	Tomm20l	4930553D19Rik	translocase of outer mitochondrial membrane 20 homolog (yeast)-like	protein-coding	8.806	7.384	3.639	7.020	6.238	4.808	5.831	4.011	4.129	9.053	6.469	5.693	5.261	6.095	5.291	6.280	6.042	5.953	3.568	2.671	3.143	2.619	3.322	4.386	9.089
12100	chr6	29476198	29477653	+	0	NA	Intergenic	Intergenic	5488	NM_001145360	668210	Mm.420607	NM_001145360	ENSMUSG00000090685	Gm9047	EG668210	predicted gene 9047	protein-coding	4.208	21.244	4.029	7.127	1.574	1.034	1.782	1.860	1.571	5.276	4.196	1.814	1.620	2.896	3.343	3.858	1.640	2.698	nan	0.730	1.343	1.519	0.367	0.903	7.305
10041	chr4	45483623	45530430	+	0	NA	intron (NM_001033306, intron 1 of 5)	intron (NM_001033306, intron 1 of 5)	23802	NM_001033306	230126	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	5.312	nan	0.774	5.264	4.497	2.366	5.203	6.932	4.766	5.988	4.116	2.830	5.312	7.785	6.688	7.444	3.159	nan	3.585	1.447	1.092	nan	1.633	1.138	8.432
10473	chr4	120647151	120648609	+	0	NA	Intergenic	Intergenic	-18683	NM_019563	56222	Mm.272646	NM_019563	ENSMUSG00000070803	Cited4	MRG-2|Mrg2	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	protein-coding	4.355	7.374	1.843	3.951	1.081	0.548	2.708	4.448	3.941	3.783	4.411	2.360	4.390	4.165	3.797	2.932	0.888	3.766	2.322	1.449	0.814	1.663	0.594	0.494	4.214
12852	chr6	145952059	145961717	+	0	NA	intron (NM_010656, intron 2 of 2)	GA-rich|Low_complexity|Low_complexity	22741	NM_010656	16651	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	nan	1.910	0.690	nan	0.435	0.279	0.730	nan	1.077	nan	2.504	1.308	nan	1.036	1.218	nan	0.519	0.834	5.188	nan	2.011	8.036	3.133	2.262	nan
4528	chr14	22800628	22815836	+	0	NA	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-265434	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	8.525	2.084	0.670	12.085	5.469	2.848	8.743	4.718	nan	11.330	10.931	6.595	7.551	10.847	9.949	13.318	6.577	12.459	2.668	2.442	2.467	nan	2.336	2.178	19.570
6039	chr16	34493049	34494625	+	0	NA	intron (NM_001164268, intron 1 of 33)	intron (NM_001164268, intron 1 of 33)	20190	NM_001164268	545156	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	2.732	0.822	0.515	4.174	3.961	1.555	1.880	1.672	2.826	2.255	0.873	0.480	2.797	3.345	1.447	2.220	1.058	3.478	1.178	1.294	0.242	0.974	1.410	0.847	1.684
8689	chr2	132094668	132096740	+	0	NA	intron (NM_018824, intron 2 of 15)	intron (NM_018824, intron 2 of 15)	49404	NM_018824	54338	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	9.421	2.212	2.414	5.153	10.239	6.122	3.255	4.101	3.651	5.955	2.375	2.786	5.419	8.650	3.777	nan	2.331	5.094	nan	1.871	1.498	1.163	0.807	1.153	5.205
4891	chr14	79666396	79685333	+	0	NA	Intergenic	Intergenic	-13681	NM_010701	16840	Mm.46561	NM_010701	ENSMUSG00000022025	Cnmd	Bricd3|ChM-I|Chmd|Lect1	chondromodulin	protein-coding	7.237	2.638	1.817	5.831	8.926	5.449	6.546	9.259	7.480	11.451	2.087	1.114	7.489	13.188	7.247	7.343	4.664	9.335	0.887	1.065	0.826	0.735	0.864	0.841	8.092
14650	chr8	120067167	120070359	+	0	NA	Intergenic	Intergenic	32709	NM_133967	102193	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	1.470	5.484	3.052	0.815	0.528	0.427	0.448	1.234	0.742	0.735	0.842	0.547	0.782	0.720	0.718	1.149	0.720	0.757	3.041	4.884	4.619	8.213	1.186	1.065	0.917
12658	chr6	119985637	119990488	+	0	NA	intron (NM_001185021, intron 4 of 25)	intron (NM_001185021, intron 4 of 25)	46249	NR_030487	735290		NR_030487	ENSMUSG00000076217	Mir706	Mirn706|mir-706|mmu-mir-706	microRNA 706	ncRNA	9.102	11.324	4.253	9.686	4.249	3.309	8.486	9.247	6.229	10.739	6.555	3.575	8.361	10.365	10.383	12.548	8.663	9.923	4.672	3.591	2.779	4.901	nan	4.209	11.778
5411	chr15	78729238	78732087	+	0	NA	Intergenic	Intergenic	-12549	NM_183141	207393	Mm.323188	NM_183141	ENSMUSG00000043460	Elfn2	6330514E13|AW048948|BC094219|Lrrc62|Ppp1r29	leucine rich repeat and fibronectin type III, extracellular 2	protein-coding	9.874	9.029	2.475	8.979	1.998	1.062	9.163	14.107	3.884	7.310	8.427	3.470	9.806	8.418	8.875	8.478	6.037	9.391	1.667	1.218	1.946	nan	1.011	0.969	15.384
9151	chr3	18112802	18115433	+	0	NA	intron (NM_007825, intron 1 of 5)	L1_Mus1|LINE|L1	59792	NM_021560	59058	Mm.149938	NM_021560	ENSMUSG00000025128	Bhlhe22	Beta3|Beta3a|Bhlhb5	basic helix-loop-helix family, member e22	protein-coding	1.311	nan	0.637	0.921	0.794	0.193	0.529	0.635	1.485	0.958	5.311	1.033	0.666	0.661	0.746	0.807	0.638	1.053	0.724	0.601	0.186	0.521	0.696	0.492	0.667
5178	chr15	54962520	54967579	+	0	NA	Intergenic	Intergenic	-44903	NM_001285994	18606	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	5.582	1.458	0.504	4.173	2.855	2.017	3.770	7.477	3.779	nan	4.258	3.568	6.156	4.936	4.628	3.838	3.043	5.874	5.781	2.812	2.333	4.937	4.075	3.759	3.757
11810	chr5	136503008	136505851	+	0	NA	intron (NM_001291234, intron 1 of 22)	intron (NM_001291234, intron 1 of 22)	61552	NM_001291239	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	1.222	1.258	0.552	2.500	1.833	0.540	0.654	0.785	0.917	1.636	0.773	0.245	1.464	6.140	3.649	1.601	0.795	1.712	0.434	0.306	0.388	0.432	nan	0.197	3.275
3363	chr12	58477069	58485203	+	0	NA	Intergenic	RLTR31D_MM|LTR|ERVK	-211878	NM_025809	66864	Mm.280563	NM_025809	ENSMUSG00000045930	Clec14a	1200003C23Rik|AI642649	C-type lectin domain family 14, member a	protein-coding	0.583	nan	0.357	0.709	0.248	0.092	0.380	0.405	0.598	0.400	1.285	2.285	0.545	0.326	nan	nan	0.726	nan	8.145	4.122	1.396	6.397	4.158	2.880	0.423
1219	chr10	39450555	39452444	+	0	NA	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	81700	NM_001122893	14360	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	12.218	16.771	6.624	12.954	8.490	6.512	9.162	8.654	6.256	16.099	9.338	4.578	7.653	11.949	9.141	10.647	9.215	9.144	7.398	5.062	5.995	7.513	7.599	10.215	18.899
2534	chr11	80002264	80005654	+	0	NA	intron (NM_199196, intron 4 of 15)	intron (NM_199196, intron 4 of 15)	10853	NM_199196	52615	Mm.283410	NM_199196	ENSMUSG00000017548	Suz12	2610028O16Rik|AI195385|AU016842|AW536442|D11Ertd530e|mKIAA0160	suppressor of zeste 12 homolog (Drosophila)	protein-coding	3.485	0.760	0.491	3.047	5.450	4.241	5.795	5.859	3.715	3.589	0.740	0.743	5.262	5.521	4.948	5.314	6.137	3.610	0.657	0.499	nan	0.594	0.923	0.865	4.499
5525	chr15	85233430	85234523	+	0	NA	intron (NM_001347088, intron 8 of 14)	intron (NM_001347088, intron 8 of 14)	27968	NM_010180	14114	Mm.297992	NM_010180	ENSMUSG00000006369	Fbln1	-	fibulin 1	protein-coding	3.109	1.310	0.413	3.123	1.700	0.378	2.086	3.598	2.921	2.554	1.059	2.670	3.328	4.089	3.178	3.616	3.740	2.908	nan	2.036	0.571	2.246	0.850	0.396	2.280
10854	chr4	144582060	144591778	+	0	NA	Intergenic	Intergenic	-21785	NM_001085542	627085	Mm.457899	NM_001085542	ENSMUSG00000078506	Gm13124	OTTMUSG00000010546	predicted gene 13124	protein-coding	4.629	nan	1.185	4.544	3.792	2.370	4.460	7.529	5.609	6.116	7.237	3.925	4.747	6.304	5.435	5.513	2.739	5.787	2.554	1.047	0.834	1.911	2.263	1.733	4.020
6772	chr17	63468163	63470447	+	0	NA	intron (NM_015794, intron 4 of 8)	B1_Mus2|SINE|Alu	31275	NM_015794	50758	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	6.772	1.027	0.377	1.665	1.792	0.436	5.992	2.743	nan	3.709	0.976	0.791	6.212	4.789	5.692	6.208	5.604	4.641	1.035	0.743	0.537	0.997	0.976	0.619	6.352
6173	chr16	86817171	86820012	+	0	NA	Intergenic	Intergenic	-535594	NM_001159331	67768	Mm.296532	NM_026366	ENSMUSG00000044442	N6amt1	5830445C04Rik|Hemk2|Pred28	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding	6.774	nan	0.228	2.769	5.239	3.624	4.960	7.705	3.694	3.040	1.872	1.121	9.080	9.245	6.579	4.017	6.048	7.055	0.610	0.806	0.532	nan	1.790	1.429	5.308
5500	chr15	83168456	83170087	+	0	NA	intron (NM_029787, intron 1 of 8)	intron (NM_029787, intron 1 of 8)	2937	NM_029787	109754	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	4.824	1.813	1.115	3.175	3.668	3.591	4.035	10.469	3.650	2.692	4.182	4.904	5.315	3.884	2.085	1.892	1.908	4.226	2.995	3.520	3.933	2.989	5.406	3.975	2.343
12811	chr6	137487731	137491616	+	0	NA	intron (NM_001271589, intron 11 of 13)	intron (NM_001271589, intron 11 of 13)	30222	NM_001271589	13860	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	2.667	0.552	0.102	1.493	0.530	0.127	1.137	2.128	4.570	4.052	1.207	3.757	4.563	1.766	nan	6.706	2.468	3.693	nan	0.888	0.379	2.068	0.794	0.538	nan
10760	chr4	137656257	137659758	+	0	NA	3' UTR (NM_130879, exon 28 of 28)	3' UTR (NM_130879, exon 28 of 28)	-6719	NM_029563	110351	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	nan	0.832	0.275	1.011	0.694	0.202	0.597	1.361	nan	0.719	1.766	1.946	1.140	0.704	0.657	0.953	0.790	1.088	5.936	2.653	1.412	5.981	4.865	2.910	1.211
1749	chr10	115701512	115706448	+	0	NA	Intergenic	Intergenic	-113304	NM_001168680	216350	Mm.22270	NM_146010	ENSMUSG00000034127	Tspan8	C76990|E330007O21Rik|Tm4sf3	tetraspanin 8	protein-coding	9.100	0.811	0.672	3.013	1.319	0.773	7.857	7.845	2.807	2.772	2.552	2.829	7.020	6.370	7.022	6.404	5.817	4.073	0.896	0.944	0.645	0.792	0.462	0.320	6.629
14497	chr8	97348284	97349785	+	0	NA	Intergenic	Lx9|LINE|L1	-803061	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	4.215	1.084	0.790	0.850	1.913	1.068	0.889	1.106	2.675	6.149	0.437	0.755	0.951	3.385	1.747	1.002	1.749	1.576	0.761	1.058	0.538	0.513	0.727	0.161	1.543
7799	chr19	44460714	44465505	+	0	NA	Intergenic	4.5SRNA|scRNA|scRNA	-30363	NM_011720	22423	Mm.88365	NM_011720	ENSMUSG00000036961	Wnt8b	-	wingless-type MMTV integration site family, member 8B	protein-coding	8.129	9.610	5.267	5.981	8.381	6.168	11.498	9.215	6.573	10.538	4.729	2.204	8.266	12.547	7.204	9.968	8.681	8.308	1.778	1.903	1.589	3.644	2.960	2.403	10.435
2128	chr11	48612234	48614680	+	0	NA	Intergenic	L1VL4|LINE|L1	-186903	NM_008143	14694	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	11.610	13.095	6.313	11.036	6.993	4.775	8.961	7.969	7.802	8.578	8.777	6.368	8.470	9.852	10.810	10.967	8.177	8.592	5.791	5.500	4.607	5.328	nan	3.838	11.122
3926	chr13	31637654	31640810	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	13416	NM_010225	14238	Mm.125548	NM_010225	ENSMUSG00000038402	Foxf2	FREAC2|Fkh20|LUN	forkhead box F2	protein-coding	4.721	0.685	0.340	1.879	2.732	1.172	3.964	5.515	3.870	4.520	4.563	2.405	5.060	6.712	4.489	5.320	3.595	4.727	0.776	0.655	0.388	0.734	0.957	0.522	3.817
11202	chr5	40149540	40151095	+	0	NA	Intergenic	Intergenic	-505686	NM_010474	15476	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	3.775	0.479	0.418	2.011	1.339	0.361	5.328	3.777	4.211	3.103	4.360	3.872	4.320	3.205	6.564	4.501	2.704	4.875	0.486	0.222	0.079	0.314	0.308	0.014	3.317
15783	chrX	98614546	98616852	+	0	NA	intron (NM_001313755, intron 18 of 23)	intron (NM_001313755, intron 18 of 23)	275326	NM_052976	94190	Mm.33536	NM_052976	ENSMUSG00000031214	Ophn1	C130037N19Rik|Wtgr	oligophrenin 1	protein-coding	4.938	3.955	2.706	3.013	3.643	1.559	4.689	3.661	2.186	4.017	2.665	1.970	2.435	6.207	2.954	3.816	3.319	2.650	2.127	2.765	2.110	2.149	3.812	3.147	4.941
12173	chr6	38719832	38726225	+	0	NA	intron (NM_001294143, intron 9 of 14)	intron (NM_001294143, intron 9 of 14)	59959	NM_001101507	665180	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	5.137	0.937	0.495	3.313	2.862	1.460	5.465	3.140	2.837	2.852	1.375	0.678	4.801	6.358	4.561	6.762	4.343	6.505	nan	1.233	0.646	nan	nan	0.473	nan
10996	chr4	155212743	155215340	+	0	NA	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	8494	NM_011385	20481	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	7.100	5.239	1.358	8.012	3.524	2.211	4.940	5.976	3.808	6.652	2.502	1.755	4.878	8.020	5.318	6.539	2.695	6.032	2.098	1.564	1.227	2.416	1.507	1.080	9.396
10813	chr4	140795049	140804558	+	0	NA	intron (NM_011060, intron 4 of 15)	B1_Mus1|SINE|Alu	10845	NM_011060	18601	Mm.20851	NM_011060	ENSMUSG00000025328	Padi3	AI507004|Pad3|Pdi3|mKIAA4171	peptidyl arginine deiminase, type III	protein-coding	nan	0.838	0.363	2.696	1.481	0.820	4.313	4.270	nan	2.163	2.763	1.937	3.072	6.049	4.308	4.795	2.335	nan	4.131	1.722	1.580	6.717	nan	2.400	4.962
8315	chr2	68278335	68281513	+	0	NA	intron (NM_016866, intron 14 of 17)	PB1D10|SINE|Alu	175252	NM_020283	26877	Mm.226435	NM_020283	ENSMUSG00000034780	B3galt1	beta3Gal-T1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	protein-coding	7.862	0.774	0.658	2.723	2.650	1.125	8.321	9.109	5.395	5.939	3.539	1.481	7.522	7.998	7.651	9.547	8.238	6.934	0.810	0.939	0.540	1.548	0.576	0.395	10.075
14263	chr8	66871722	66875394	+	0	NA	intron (NM_001163564, intron 2 of 7)	intron (NM_001163564, intron 2 of 7)	13341	NM_001163564	234344	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 ribonucleoprotein	protein-coding	0.514	0.460	0.714	0.473	0.227	0.168	0.265	0.420	0.634	0.537	0.417	0.275	0.197	0.243	0.284	0.590	0.518	0.683	nan	4.216	2.346	8.129	1.421	0.726	nan
8391	chr2	77270761	77303894	+	0	NA	Intergenic	Intergenic	-6735	NM_175465	228071	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	nan	0.427	0.307	nan	1.486	0.642	3.959	2.362	2.586	3.409	0.379	0.403	7.696	6.376	nan	nan	5.677	5.178	0.480	0.400	0.281	0.572	0.353	0.229	nan
6343	chr17	13817631	13822090	+	0	NA	intron (NM_010806, intron 6 of 32)	intron (NM_010806, intron 6 of 32)	-58466	NM_022311	21646	Mm.486358	NM_022311	ENSMUSG00000038347	Tcte2	AI429268|Tcte-2	t-complex-associated testis expressed 2	protein-coding	9.251	5.523	2.519	9.589	5.677	2.440	9.849	7.898	6.029	7.966	8.966	3.844	6.853	10.706	8.769	10.635	6.967	8.908	1.493	1.294	1.120	1.772	1.735	0.854	nan
14775	chr8	127109161	127111995	+	0	NA	intron (NM_001309391, intron 1 of 24)	intron (NM_001309391, intron 1 of 24)	46522	NM_001309391	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	1.064	nan	0.440	nan	0.235	0.255	nan	nan	0.527	0.530	0.146	0.540	0.380	0.418	nan	0.833	0.444	nan	4.705	4.994	3.203	nan	6.115	3.565	nan
10298	chr4	98757540	98759229	+	0	NA	intron (NM_172872, intron 9 of 9)	intron (NM_172872, intron 9 of 9)	31630	NM_001081202	381591	Mm.34340	NM_001081202	ENSMUSG00000087166	L1td1	AA546746|AB211064|D76865|ECAT11	LINE-1 type transposase domain containing 1	protein-coding	3.757	nan	0.482	1.808	3.038	0.977	3.332	3.798	3.416	3.183	1.461	1.540	3.395	4.111	3.530	4.356	2.598	4.498	1.754	1.367	0.351	nan	1.247	0.456	2.823
7905	chr19	57942197	57943801	+	0	NA	intron (NM_181415, intron 27 of 28)	B3|SINE|B2	-108168	NR_049196	100885835		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	3.244	nan	0.527	2.749	1.587	0.843	4.314	1.956	2.441	4.045	0.827	0.432	4.265	5.584	3.878	4.551	5.418	3.388	0.949	0.963	0.475	1.143	0.870	0.838	nan
7783	chr19	42199800	42206443	+	0	NA	promoter-TSS (NM_018780)	promoter-TSS (NM_018780)	-869	NM_018780	54612	Mm.470071	NM_018780	ENSMUSG00000018822	Sfrp5	AI605071|SARP3	secreted frizzled-related sequence protein 5	protein-coding	11.326	3.658	1.237	10.733	6.388	3.242	12.053	15.316	9.236	11.864	10.623	5.435	11.174	15.742	13.805	15.552	11.025	13.365	1.475	1.146	1.046	3.208	1.664	1.056	16.841
7755	chr19	38473187	38475006	+	0	NA	Intergenic	Intergenic	-50101	NM_019588	74055	Mm.34031	NM_019588	ENSMUSG00000024998	Plce1	4933403A21Rik|PLCepsilon|Plce|mKIAA1516	phospholipase C, epsilon 1	protein-coding	nan	2.172	1.045	1.542	1.199	0.652	1.239	6.713	3.198	2.389	0.703	0.613	1.909	4.784	2.591	3.088	5.553	1.455	0.321	0.386	0.205	0.881	0.378	0.574	1.561
7492	chr19	5571777	5573711	+	0	NA	Intergenic	Intergenic	4670	NM_001033448	381201	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962	adaptor-related protein complex 5, beta 1 subunit	protein-coding	5.503	2.760	1.713	4.273	3.410	3.312	4.730	6.558	3.600	4.400	2.982	1.473	3.710	6.617	4.515	6.137	5.129	4.055	0.547	1.254	1.734	0.497	0.652	0.689	9.119
7103	chr18	33451675	33453334	+	0	NA	intron (NM_053078, intron 2 of 3)	intron (NM_053078, intron 2 of 3)	11130	NM_001267717	27528	Mm.407415	NM_053078	ENSMUSG00000042834	Nrep	AI325076|D0H4S114|Harp|P311|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding	8.372	0.947	0.887	3.794	2.916	1.358	4.410	5.799	4.662	6.202	0.993	1.079	8.450	6.650	6.064	8.021	8.025	5.849	1.886	1.540	1.468	1.344	0.719	0.478	8.570
2737	chr11	98048338	98049759	+	0	NA	intron (NM_146028, intron 1 of 10)	L3|LINE|CR1	4414	NM_146028	217154	Mm.181008	NM_146028	ENSMUSG00000017400	Stac2	24b2|24b2/STAC2|AW240854	SH3 and cysteine rich domain 2	protein-coding	3.202	nan	0.335	2.431	3.506	1.988	2.397	2.815	2.289	3.561	0.629	0.445	3.801	6.201	3.233	3.410	3.607	2.605	0.621	nan	0.954	0.486	nan	nan	3.675
13915	chr7	150304006	150311006	+	0	NA	Intergenic	Intergenic	4992671	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	3.921	nan	0.353	4.804	2.782	1.562	2.630	8.092	4.224	4.348	6.850	3.419	2.808	4.810	4.005	5.031	4.205	5.334	1.865	0.971	0.681	2.247	nan	0.817	6.400
7720	chr19	34401936	34404065	+	0	NA	Intergenic	Intergenic	72135	NM_009890	12642	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	nan	0.880	1.036	3.252	2.031	1.391	0.796	nan	2.045	1.643	0.812	0.428	0.356	1.262	0.968	1.222	nan	2.378	0.329	1.186	1.041	0.628	0.602	0.643	0.645
804	chr1	163424286	163425801	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	-21374	NM_178883	98376	Mm.32901	NM_178883	ENSMUSG00000040124	Gorab	NTKL-BP1|SCYL1-BP1|Scyl1bp1	golgin, RAB6-interacting	protein-coding	3.469	1.382	1.219	nan	1.870	0.309	1.863	1.083	2.487	2.643	1.936	1.393	1.762	3.474	2.966	3.909	2.258	2.511	0.440	0.327		nan	nan	0.350	1.803
5728	chr15	102335900	102336983	+	0	NA	intron (NM_021713, intron 3 of 6)	B1_Mur2|SINE|Alu	4732	NM_021713	60315	Mm.251638	NM_021713	ENSMUSG00000001285	Myg1	0610023A07Rik|2810433J21Rik|5830429P19Rik|AI325965|Gamm1	melanocyte proliferating gene 1	protein-coding	2.207	0.531	0.725	2.017	2.197	1.664	4.338	3.058	2.590	2.250	1.127	0.864	2.076	3.680	2.513	2.797	2.220	2.938	1.747	1.077	1.569	1.204	1.661	2.025	2.355
5514	chr15	84534146	84536763	+	0	NA	Intergenic	L1MDa|LINE|L1	22369	NM_177630	223732	Mm.6471	NM_177630	ENSMUSG00000055745	Ldoc1l	BC058638|Mar6|Mart6	leucine zipper, down-regulated in cancer 1-like	protein-coding	nan	13.604	6.226	nan	0.416	0.115	nan	1.814	nan	0.576	0.529	0.649	0.690	0.751	nan	nan	nan	nan	nan	0.864	0.920	nan	0.370	0.444	nan
8095	chr2	30702397	30709012	+	0	NA	Intergenic	Intergenic	-15506	NR_037272	100526499		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0.915	0.487	0.176	0.616	0.187	0.111	1.965	4.005	nan	0.734	0.493	1.076	1.174	1.350	2.241	1.554	0.552	1.351	4.064	2.026	1.405	5.598	1.643	1.056	1.256
14459	chr8	93367404	93368668	+	0	NA	Intergenic	Intergenic	-30827	NM_021456	12623	Mm.22720	NM_021456	ENSMUSG00000057074	Ces1g	Ces-1|Ces1|Ses-1	carboxylesterase 1G	protein-coding	0.915	5.496	6.082	0.680	0.819	0.197	0.770	0.660	0.230	0.676	1.168	0.356	0.467	0.359	0.340	0.497	0.394	0.258	0.371	1.462	0.234	0.440	0.507	0.292	0.255
11188	chr5	37090832	37092781	+	0	NA	intron (NM_001347348, intron 2 of 20)	intron (NM_001347348, intron 2 of 20)	6570	NM_001347348	76071	Mm.85280	NM_178394	ENSMUSG00000063646	Jakmip1	5830437M04Rik|C330021K24Rik|Gababrbp|Marlin-1	janus kinase and microtubule interacting protein 1	protein-coding	2.615	1.299	0.530	1.744	1.486	0.329	4.928	3.038	1.708	1.427	1.375	1.524	2.341	4.498	4.055	1.830	nan	3.296	0.576	0.761	0.452	0.797	0.856	0.449	2.782
15595	chr9	120666734	120669765	+	0	NA	Intergenic	RMER19A|LTR|ERVK	90918	NR_073359	76100	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	3.674	0.572	0.186	3.707	1.870	1.155	5.673	3.907	4.252	3.645	2.393	1.864	6.320	6.066	5.384	6.595	3.149	5.675	1.242	1.172	0.758	1.739	nan	0.533	3.435
12918	chr7	6237601	6238526	+	0	NA	intron (NM_133204, intron 5 of 5)	intron (NM_133204, intron 5 of 5)	-14647	NM_001177416	627821	Mm.99441	NM_001177416	ENSMUSG00000053367	Gm6792	EG627821	predicted gene 6792	protein-coding	5.530	10.388	2.420	5.146	3.265	0.853	2.221	4.791	2.357	4.107	1.815	1.130	2.341	4.010	4.495	6.062	3.435	4.897	4.234	3.726	3.175	4.142	4.632	3.339	7.066
12016	chr5	152117780	152119477	+	0	NA	Intergenic	Intergenic	-467420	NM_027009	69263	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	3.834	0.699	0.540	3.052	5.492	2.878	2.809	2.616	3.404	3.596	3.010	1.852	2.018	3.770	2.534	4.090	2.599	4.025	1.052	0.919	1.085	1.097	1.330	0.335	2.373
5962	chr16	29480139	29483060	+	0	NA	intron (NM_172613, intron 2 of 29)	B3|SINE|B2	59884	NM_172613	224079	Mm.54954	NM_172613	ENSMUSG00000038094	Atp13a4	4631413J11Rik|4832416L12|9330174J19Rik	ATPase type 13A4	protein-coding	7.341	0.586	0.376	1.675	2.868	1.417	5.429	5.759	1.414	1.889	0.693	0.587	9.096	7.557	7.508	7.301	4.600	5.112	0.887	0.795	0.310	0.631	nan	0.356	6.279
4503	chr14	21296618	21299475	+	0	NA	intron (NM_001243041, intron 6 of 10)	intron (NM_001243041, intron 6 of 10)	-201724	NM_001205241	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	8.143	7.194	3.629	7.785	5.464	3.172	5.388	9.498	nan	6.232	5.732	3.694	5.572	8.069	6.199	8.421	4.929	6.597	3.569	1.975	1.819	nan	2.635	1.917	7.815
8407	chr2	84437124	84443408	+	0	NA	TTS (NM_001177319)	TTS (NM_001177319)	-15000	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	4.164	0.678	0.397	2.398	1.881	0.676	3.662	2.826	3.029	3.270	1.612	0.702	4.652	4.499	4.340	5.163	5.486	4.005	0.778	0.823	0.390	0.775	0.500	0.256	6.065
9020	chr2	167400198	167401529	+	0	NA	Intergenic	B3A|SINE|B2	-20847	NM_148929	77031	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	2.946	1.809	0.718	2.987	2.351	0.507	2.838	4.773	2.101	3.612	1.738	1.568	1.884	3.348	1.934	1.920	1.293	nan	nan	1.680	1.556	4.757	0.729	0.257	3.523
1385	chr10	67609208	67611340	+	0	NA	Intergenic	Intergenic	-61319	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	3.514	0.884	1.263	2.840	1.676	0.514	1.525	2.067	3.304	3.012	1.869	1.846	4.217	3.551	2.707	3.455	3.427	3.642	1.439	0.717	0.303	1.871	0.667	0.416	2.736
12645	chr6	118600908	118604596	+	0	NA	intron (NM_001256002, intron 42 of 47)	intron (NM_001256002, intron 42 of 47)	-40496	NM_001081112	232339	Mm.276116	NM_001081112	ENSMUSG00000007827	Ankrd26	5730521P14Rik|BC008111|mKIAA1074	ankyrin repeat domain 26	protein-coding	0.311	0.600	0.442	0.320	0.178	0.102	0.402	0.345	0.294	0.403	0.209	0.136	0.301	nan	0.261	0.871	0.440	0.441	2.080	3.303	1.938	4.490	7.317	4.362	0.530
5168	chr15	53174415	53178448	+	0	NA	intron (NM_010162, intron 1 of 10)	intron (NM_010162, intron 1 of 10)	169752	NM_010162	14042	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	8.168	6.137	2.246	7.411	3.341	1.833	6.258	8.390	nan	7.775	4.417	3.268	7.284	6.267	8.980	8.833	6.053	8.149	2.232	1.642	1.365	3.037	1.846	1.954	12.011
4156	chr13	54682247	54684513	+	0	NA	intron (NR_027395, intron 4 of 10)	intron (NR_027395, intron 4 of 10)	4428	NM_001146025	105239	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	3.587	1.210	0.243	3.467	1.824	0.743	3.856	5.906	2.886	3.419	2.081	2.712	4.645	5.871	3.675	5.091	2.740	4.783	1.704	1.095	1.136	3.286	1.098	0.970	4.644
15572	chr9	118732906	118735295	+	0	NA	intron (NM_001113514, intron 1 of 13)	intron (NM_001113514, intron 1 of 13)	22408	NM_001113514	104099	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.904	0.583	0.199	1.393	0.917	0.263	2.924	0.975	2.423	3.339	0.436	0.307	2.120	2.873	2.486	3.663	1.270	3.736	0.683	0.232	0.084	0.873	nan	0.420	5.223
1818	chr10	121845406	121846629	+	0	NA	intron (NM_001242411, intron 8 of 21)	intron (NM_001242411, intron 8 of 21)	106080	NM_173022	270802	Mm.209172	NM_173022	ENSMUSG00000053684	BC048403	E030027L10	cDNA sequence BC048403	protein-coding	3.977	0.355	0.316	1.646	1.047	0.218	4.481	3.428	2.377	3.093	0.474	0.279	6.251	4.713	6.334	5.554	2.853	4.055	0.796	0.357	0.220	0.341	0.144	0.096	3.839
7435	chr18	82981238	82982680	+	0	NA	intron (NM_183033, intron 2 of 5)	intron (NM_183033, intron 2 of 5)	-61399	NR_033307	75853	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	5.645	2.898	1.095	6.255	1.744	0.261	6.986	3.732	4.765	4.884	4.914	3.920	3.274	4.285	5.417	5.179	2.308	5.210	4.199	nan	1.758	7.959	3.226	2.155	7.640
1837	chr10	126577826	126588920	+	0	NA	Intergenic	L1_Mur2|LINE|L1	127018	NR_105841	102465224		NR_105841	ENSMUSG00000098756	Mir378d	Gm27650|mmu-mir-378d	microRNA 378d	ncRNA	4.381	nan	1.936	3.531	3.849	2.213	3.633	3.369	2.342	2.571	3.826	1.543	5.207	4.528	4.038	4.725	4.318	3.933	0.779	1.229	1.054	0.571	nan	0.843	3.631
143	chr1	40532170	40533717	+	0	NA	intron (NM_010553, intron 7 of 12)	RMER17A2|LTR|ERVK	17581	NM_010553	16174	Mm.20466	NM_010553	ENSMUSG00000026068	Il18rap	AcPL|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1RAcPL	interleukin 18 receptor accessory protein	protein-coding	3.899	3.457	1.920	2.848	2.835	0.866	5.692	3.141	3.136	2.778	3.598	1.886	5.013	4.054	3.047	6.039	4.154	3.441	0.785	0.930	1.093	0.282	0.720	0.488	2.387
9238	chr3	37455162	37457960	+	0	NA	intron (NM_001310473, intron 11 of 16)	intron (NM_001310473, intron 11 of 16)	36611	NM_021343	57815	Mm.172679	NM_021343	ENSMUSG00000027722	Spata5	2510048F20Rik|C78064|Spaf	spermatogenesis associated 5	protein-coding	3.526	1.429	0.465	2.272	0.735	0.687	6.686	3.338	2.444	2.027	1.720	1.364	5.752	5.993	5.028	5.680	4.848	4.392	nan	0.989	0.564	nan	0.976	0.611	4.994
7384	chr18	74773669	74775507	+	0	NA	Intergenic	Intergenic	3867	NR_028560	100217466		NR_028560		Scarna17	MBII-119	small Cajal body-specific RNA 17	ncRNA	2.604	nan	0.500	4.235	8.899	5.776	2.722	1.046	4.812	7.621	0.582	0.424	4.842	6.209	3.250	3.207	1.750	3.931	0.649	nan	0.915	0.589	0.822	0.502	3.186
15288	chr9	72122280	72124429	+	0	NA	Intergenic	Intergenic	-11535	NM_001253865	21406	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	6.204	9.612	3.687	8.183	3.445	2.640	5.033	5.549	4.671	11.734	5.491	2.624	5.227	6.611	6.555	8.062	4.372	7.942	6.152	2.826	1.777	7.571	4.053	5.024	12.552
15263	chr9	70116996	70119584	+	0	NA	intron (NM_029784, intron 3 of 8)	intron (NM_029784, intron 3 of 8)	23267	NM_029784	76886	Mm.44355	NM_029784	ENSMUSG00000032224	Fam81a	6430514L14Rik	family with sequence similarity 81, member A	protein-coding	3.683	1.400	1.041	1.558	1.572	0.885	3.914	4.272	2.456	2.803	3.878	3.022	7.818	4.024	nan	4.172	2.926	3.390	nan	1.423	0.906	0.688	0.952	0.593	5.853
4020	chr13	41495149	41500876	+	0	NA	Intergenic	Intergenic	-10652	NM_001111324	18003	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	3.561	nan	1.538	3.250	4.204	2.578	nan	nan	nan	nan	1.349	2.323	3.215	4.958	3.729	nan	2.236	nan	2.365	1.784	1.245	3.006	3.104	1.936	nan
8638	chr2	127095228	127097702	+	0	NA	intron (NM_026678, intron 7 of 7)	B4A|SINE|B4	25808	NM_026678	109778	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	8.381	11.026	3.712	9.158	2.325	2.084	6.136	8.884	4.917	9.067	5.764	2.597	8.151	8.064	8.731	10.958	8.832	8.681	nan	2.616	2.977	5.789	2.976	3.844	13.346
7800	chr19	44478387	44488398	+	0	NA	Intergenic	RMER17A|LTR|ERVK	-10080	NM_011720	22423	Mm.88365	NM_011720	ENSMUSG00000036961	Wnt8b	-	wingless-type MMTV integration site family, member 8B	protein-coding	3.321	4.790	2.720	nan	5.775	4.679	4.952	3.421	4.194	7.122	1.614	1.026	4.344	6.436	3.938	7.203	5.850	nan	0.851	1.074	0.910	1.237	1.161	1.129	5.523
2323	chr11	63718022	63722530	+	0	NA	Intergenic	Intergenic	202008	NM_018805	54710	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	3.236	3.869	1.170	3.904	4.224	2.342	1.790	2.365	2.317	2.892	0.687	0.514	3.690	4.791	4.239	3.463	2.790	3.667	0.943	0.777	0.451	0.699	nan	0.639	6.081
6157	chr16	76954221	76955267	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	56137	NR_040573	76601	Mm.396217	NR_040573	ENSMUSG00000100857	1700041M19Rik	-	RIKEN cDNA 1700041M19 gene	ncRNA	2.831	0.455	0.609	1.242	2.240	0.549	2.864	3.365	1.499	2.683	3.331	2.105	3.619	3.519	2.108	3.770	2.463	3.672	nan	1.809	0.821	1.635	0.796	1.304	1.918
3049	chr11	117820004	117841255	+	0	NA	intron (NM_027827, intron 2 of 10)	intron (NM_027827, intron 2 of 10)	-4615	NM_009387	21877	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	8.994	nan	1.860	8.164	5.476	3.780	6.113	nan	5.615	8.494	4.484	2.296	6.706	9.386	6.669	7.149	4.773	nan	4.721	nan	3.162	6.412	3.286	3.043	9.206
2822	chr11	102076408	102082405	+	0	NA	intron (NM_016695, intron 3 of 12)	intron (NM_016695, intron 3 of 12)	9109	NM_016695	50997	Mm.36242	NM_016695	ENSMUSG00000017314	Mpp2	D11Bwg0652e|Dlg2|Dlgh2|Pals4	membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2)	protein-coding	4.872	2.866	0.463	6.489	2.586	1.041	5.195	5.090	3.321	4.897	1.226	1.344	4.861	6.954	6.666	8.455	3.614	6.543	4.658	nan	1.518	5.402	nan	nan	8.910
13415	chr7	95368223	95369425	+	0	NA	Intergenic	Lx5c|LINE|L1	-802420	NM_001310762	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	2.121	1.246	1.332	1.095	2.765	2.753	7.602	5.737	2.206	1.132	0.974	0.563	2.818	3.522	2.665	3.291	5.017	3.201	nan	1.200	1.430	0.185	1.260	1.997	1.141
14450	chr8	90951500	90954498	+	0	NA	intron (NM_001310530, intron 1 of 37)	intron (NM_001310530, intron 1 of 37)	20750	NM_001310530	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	2.529	0.399	0.374	2.054	6.242	4.402	1.064	1.234	nan	2.229	0.335	0.351	3.067	4.446	1.471	1.725	1.331	1.370	nan	0.868	1.114	0.881	0.578	0.715	1.281
12714	chr6	127098879	127100905	+	0	NA	intron (NM_177003, intron 2 of 5)	ORR1A3-int|LTR|ERVL-MaLR	9660	NM_177003	319801	Mm.101836	NM_177003	ENSMUSG00000038028	Tigar	9630033F20Rik|AA793651|AI595337|C79710|C85509	Trp53 induced glycolysis repulatory phosphatase	protein-coding	4.163	12.200	4.446	6.402	5.201	3.214	2.639	nan	4.607	5.121	6.915	6.785	3.066	6.442	6.005	3.656	2.349	3.408	0.905	1.603	1.934	0.615	0.524	0.820	4.693
12018	chr5	152170066	152172292	+	0	NA	Intergenic	Intergenic	-519971	NM_027009	69263	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	9.857	10.001	3.055	9.024	4.627	2.033	8.519	7.157	nan	9.765	9.654	3.599	9.956	11.549	12.394	11.151	7.528	10.305	7.044	4.549	1.616	7.254	4.583	3.343	10.575
9654	chr3	105501423	105503246	+	0	NA	intron (NM_001039347, intron 2 of 6)	intron (NM_001039347, intron 2 of 6)	43518	NM_019931	56543	Mm.44530	NM_019931	ENSMUSG00000040896	Kcnd3	AW045978|Kncd3|Kv4.3	potassium voltage-gated channel, Shal-related family, member 3	protein-coding	5.476	0.809	0.143	4.293	1.305	0.584	3.976	1.784	3.745	4.037	1.175	0.779	6.729	4.147	3.052	5.265	2.772	5.932	0.720	0.551	0.413	0.868	0.699	0.443	4.813
9949	chr4	14790049	14792220	+	0	NA	intron (NM_028499, intron 1 of 7)	MTA_Mm|LTR|ERVL-MaLR	4918	NM_028499	73314	Mm.52613	NM_028499	ENSMUSG00000023151	Lrrc69	1700034K16Rik	leucine rich repeat containing 69	protein-coding	12.061	4.184	1.791	10.014	7.069	4.504	10.434	9.331	8.595	11.228	9.507	6.283	9.888	13.517	10.673	10.602	8.873	10.660	4.975	4.619	2.795	4.605	4.362	4.410	13.425
11671	chr5	122713960	122715399	+	0	NA	intron (NM_001310718, intron 2 of 10)	intron (NM_001310718, intron 2 of 10)	7135	NM_001310718	18438	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	4.698	4.668	2.639	5.004	2.959	2.391	3.822	4.889	3.163	3.767	4.544	1.867	3.299	4.892	4.195	5.270	3.145	4.762	nan	nan	1.995	3.521	nan	1.296	5.040
7703	chr19	32327955	32331134	+	0	NA	intron (NM_144792, intron 2 of 9)	MER102c|DNA|hAT-Charlie	19772	NM_001168525	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	3.840	8.485	4.010	5.267	1.677	0.307	1.481	2.059	3.394	2.888	nan	1.446	1.535	2.319	1.977	2.337	1.890	3.619	nan	1.265	0.450	1.571	nan	0.447	1.273
7374	chr18	73904000	73906817	+	0	NA	Intergenic	Intergenic	46023	NM_001305882	71263	Mm.126220	NM_027741	ENSMUSG00000064036	Mro	4930507C04Rik|4933435E20Rik	maestro	protein-coding	5.710	nan	0.810	2.740	1.843	0.821	1.122	3.694	1.890	nan	5.922	1.733	2.175	1.772	1.491	1.608	1.354	1.879	1.627	nan	0.591	1.070	1.190	1.059	1.635
2914	chr11	106836540	106838226	+	0	NA	intron (NM_025481, intron 12 of 18)	B1F|SINE|Alu	48131	NM_001166685	320162	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	2.758	1.522	0.567	5.644	1.331	0.914	2.163	1.651	nan	2.054	1.334	1.429	3.034	4.329	2.335	4.581	1.802	3.971	0.918	0.667	0.661	nan	0.349	0.264	3.161
1211	chr10	37223637	37225439	+	0	NA	Intergenic	Intergenic	-85612	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	4.644	0.653	0.229	2.466	0.717	0.388	2.693	2.474	3.322	2.585	2.342	1.364	3.956	3.594	3.809	4.081	3.667	3.839	0.712	0.750	0.303	0.816	0.528	0.333	2.890
11865	chr5	139453035	139456998	+	0	NA	intron (NM_028469, intron 2 of 4)	RSINE1|SINE|B4	5518	NM_028469	73212	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	2.293	0.748	0.200	2.154	0.815	0.273	4.082	3.459	1.885	2.118	1.123	0.518	4.704	3.645	3.148	4.969	2.650	3.055	3.247	0.862	0.817	3.304	nan	1.517	7.135
2399	chr11	70067772	70068797	+	0	NA	Intergenic	Intergenic	13929	NM_001291132	11889	Mm.6559	NM_009714	ENSMUSG00000020884	Asgr1	ASGPR1|Asgr|Asgr-1|HL-1	asialoglycoprotein receptor 1	protein-coding	1.762	1.760		3.202	1.944	0.574	2.313	3.242	1.418	2.400	3.514	1.413	1.866	3.134	3.536	4.179	1.865	2.984	2.014	1.730	0.891	3.727	nan	1.161	4.236
1542	chr10	83086193	83096365	+	0	NA	intron (NM_021439, intron 1 of 2)	MTD|LTR|ERVL-MaLR	105782	NM_021439	58250	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	nan	0.782	0.420	1.830	1.133	0.642	1.768	2.798	2.098	1.999	3.401	2.333	2.164	nan	2.432	1.969	1.023	nan	4.402	2.673	2.196	5.653	nan	2.730	2.994
2102	chr11	44376046	44380453	+	0	NA	Intergenic	Intergenic	-21814	NM_001303244	16160	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	4.153	1.331	0.545	3.402	4.200	2.999	4.056	2.373	3.946	4.987	1.059	0.796	6.475	8.212	4.858	6.145	3.938	6.302	nan	0.336	0.390	nan	nan	0.449	4.925
13981	chr8	9932577	9935955	+	0	NA	Intergenic	Lx9|LINE|L1	42057	NM_176953	319583	Mm.80584	NM_176953	ENSMUSG00000049717	Lig4	5830471N16Rik|tiny	ligase IV, DNA, ATP-dependent	protein-coding	7.050	0.818	0.252	3.320	2.542	1.112	4.139	5.067	4.679	4.809	0.669	1.016	7.066	6.005	6.266	8.381	5.713	7.329	1.625	0.946	0.605	2.257	1.030	0.721	7.476
10564	chr4	129249353	129252594	+	0	NA	intron (NM_001285867, intron 1 of 6)	intron (NM_001285867, intron 1 of 6)	-2530	NM_001033189	97130	Mm.331907	NM_001033189	ENSMUSG00000050390	C77080	Kiaa1522|mKIAA1522	expressed sequence C77080	protein-coding	2.793	19.486	8.171	3.525	1.863	1.254	1.181	0.836	1.935	2.129	0.920	0.734	0.899	1.196	nan	1.908	0.864	1.977	0.988	1.521	1.466	0.866	0.709	0.591	2.444
8548	chr2	118027360	118032035	+	0	NA	intron (NR_126479, intron 7 of 9)	intron (NR_126479, intron 7 of 9)	81505	NR_126479	329496	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24|OTTMUSG00000015236	predicted gene 13986	ncRNA	3.218	0.685	0.351	1.797	0.829	0.212	2.280	2.801	1.503	1.987	0.700	0.419	nan	3.170	2.923	nan	2.756	2.386	1.039	0.405	0.423	1.142	0.594	0.391	nan
478	chr1	98767411	98769178	+	0	NA	Intergenic	MERVL-int|LTR|ERVL	347170	NM_027584	70866	Mm.389164	NM_027584	ENSMUSG00000026336	Slco6d1	4921511I05Rik	solute carrier organic anion transporter family, member 6d1	protein-coding	9.266	nan	0.357	4.655	2.313	0.981	5.145	4.775	4.241	8.081	1.208	0.669	4.957	3.557	5.190	11.866	9.805	6.348	nan	1.342	0.365	nan	0.570	0.377	14.034
15615	chr9	121761964	121767864	+	0	NA	intron (NM_001166644, intron 2 of 5)	intron (NM_001166644, intron 2 of 5)	4881	NM_001166644	270210	Mm.473702	NM_001166644	ENSMUSG00000013419	Zfp651	4732420M22Rik|BC030045|R74626	zinc finger protein 651	protein-coding	5.748	4.887	2.288	5.519	3.162	2.365	4.290	5.539	4.058	6.235	2.334	1.772	4.954	7.497	5.756	5.910	3.892	6.077	3.371	1.731	1.610	3.269	nan	1.996	7.446
15084	chr9	53163104	53168882	+	0	NA	intron (NM_029936, intron 13 of 17)	intron (NM_029936, intron 13 of 17)	82119	NM_029936	77591	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	5.637	0.915	0.870	3.543	3.821	2.919	5.799	5.975	5.698	5.907	5.060	5.210	6.082	7.121	5.463	6.967	5.304	5.821	3.439	2.420	2.751	2.780	3.898	3.871	6.295
836	chr1	166614863	166619403	+	0	NA	Intergenic	B1_Mm|SINE|Alu	30560	NM_001164312	226604	Mm.330032	NM_001164312	ENSMUSG00000051081	Gm4847	EG226604|Fmo12	predicted gene 4847	protein-coding	2.959	0.551	0.398	nan	1.966	0.848	2.764	2.412	3.580	3.245	0.634	0.619	4.230	3.547	3.368	5.796	4.060	4.407	0.678	0.492	0.428	nan	nan	0.354	nan
11682	chr5	123059594	123062456	+	0	NA	Intergenic	B3A|SINE|B2	-14009	NM_001347456	74890	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	4.526	0.718	0.629	2.508	2.455	1.243	3.031	3.682	2.426	nan	0.576	0.823	3.295	5.517	4.250	4.511	5.428	2.579	nan	0.656	0.447	0.716	nan	0.533	3.015
7559	chr19	10211179	10213656	+	0	NA	intron (NM_001033481, intron 22 of 25)	intron (NM_001033481, intron 22 of 25)	6384	NM_001163431	69038	Mm.375100	NM_026919	ENSMUSG00000036372	Tmem258	1810006K21Rik	transmembrane protein 258	protein-coding	3.716	0.712	0.264	2.601	1.236	0.391	1.833	4.178	nan	1.388	8.064	2.042	1.623	2.314	2.378	2.786	1.833	3.571	0.538	0.703	0.346	0.910	0.421	0.245	2.965
4028	chr13	41694999	41697284	+	0	NA	Intergenic	Intergenic	45379	NM_001145878	328231	Mm.227476	NM_177808	ENSMUSG00000054258	Gm5082	A030008J09|EG328231	predicted gene 5082	protein-coding	6.881	nan	1.771	4.436	5.460	3.056	2.381	3.662	3.427	4.784	2.154	1.002	2.774	5.637	2.341	3.013	3.252	3.687	1.658	1.931	2.527	1.153	1.879	1.715	3.771
6767	chr17	57386059	57390778	+	0	NA	intron (NM_010130, intron 2 of 21)	Lx8|LINE|L1	29732	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	8.286	7.852	2.012	8.870	3.759	1.676	8.320	8.369	4.203	6.905	4.810	2.680	6.256	8.753	9.325	11.761	7.114	7.414	2.721	1.985	1.468	3.603	2.698	1.580	14.227
3068	chr11	118884510	118886408	+	0	NA	intron (NM_001285437, intron 1 of 13)	intron (NM_001285437, intron 1 of 13)	24113	NM_001024931	52897	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	1.875	3.190	0.940	2.860	1.141	0.989	1.371	nan	1.297	nan	1.612	1.146	0.930	1.396	2.554	2.362	0.840	nan	5.539	nan	3.754	6.092	4.470	3.635	3.997
15112	chr9	57098076	57099989	+	0	NA	intron (NM_001110350, intron 8 of 20)	intron (NM_001110350, intron 8 of 20)	22656	NM_011378	20466	Mm.15755	NM_011378	ENSMUSG00000042557	Sin3a	AW553200|Sin3|mKIAA4126|mSin3A	transcriptional regulator, SIN3A (yeast)	protein-coding	1.956	1.347	0.135	1.477	0.822	0.512	2.890	2.631	2.120	3.129	1.484	0.532	3.473	4.340	2.586	4.153	1.346	4.360	2.108	0.777	0.353	2.179	0.614	0.889	6.007
3989	chr13	37944315	37947942	+	0	NA	intron (NM_001177869, intron 10 of 11)	intron (NM_001177869, intron 10 of 11)	48062	NM_025965	107513	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	7.294	nan	1.890	5.852	5.037	2.686	4.491	nan	nan	5.786	4.670	2.486	5.091	7.724	5.348	nan	4.445	nan	5.474	3.506	1.948	5.670	3.681	2.721	nan
13635	chr7	120025681	120030231	+	0	NA	Intergenic	Intergenic	-74470	NM_145586	233806	Mm.257952	NM_145586	ENSMUSG00000030917	Tmem159	8430420C20Rik	transmembrane protein 159	protein-coding	0.363	0.601	0.202	0.520	0.240	0.205	0.640	0.669	0.509	0.557	0.516	0.359	0.306	nan	0.730	0.847	0.610	0.638	2.538	1.271	0.917	4.229	1.419	1.046	0.663
3512	chr12	81223651	81226476	+	0	NA	intron (NM_080440, intron 2 of 7)	intron (NM_080440, intron 2 of 7)	58912	NR_037227	100526532		NR_037227	ENSMUSG00000092673	Mir3067	mir-3067|mmu-mir-3067	microRNA 3067	ncRNA	3.791	4.084	1.542	2.920	2.629	0.841	4.044	3.631	2.058	2.410	0.774	1.140	3.235	4.010	4.626	6.518	3.226	4.507	4.987	2.635	2.763	4.857	5.493	4.272	6.052
7237	chr18	53503865	53507787	+	0	NA	intron (NM_001033281, intron 2 of 6)	CT-rich|Low_complexity|Low_complexity	41280	NM_001033281	225518	Mm.297645	NM_001033281	ENSMUSG00000069378	Prdm6	Gm92|PRISM	PR domain containing 6	protein-coding	nan	nan	0.497	nan	1.101	0.483	1.607	nan	0.705	0.762	5.902	1.820	nan	0.900	1.031	0.659	0.881	nan	nan	0.641	0.521	nan	0.367	0.359	nan
9719	chr3	115708308	115711573	+	0	NA	TTS (NM_007901)	TTS (NM_007901)	5115	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	6.549	8.443	2.321	6.805	3.430	1.681	7.496	5.873	4.786	5.096	4.234	2.667	6.148	6.994	7.233	8.746	5.362	6.739	4.818	2.082	1.894	4.113	3.705	2.779	10.495
9104	chr2	179980846	179987108	+	0	NA	Intergenic	Intergenic	7124	NR_033782	66730	Mm.31773	NR_033782	ENSMUSG00000085704	4921531C22Rik	-	RIKEN cDNA 4921531C22 gene	ncRNA	4.587	1.009	0.707	2.888	3.439	2.543	3.873	5.557	4.249	4.518	2.619	2.711	3.927	4.505	3.356	nan	3.495	4.542	0.677	0.783	0.799	0.921	0.643	0.635	nan
8257	chr2	58433137	58434683	+	0	NA	Intergenic	Intergenic	-76152	NM_001111030	269275	Mm.77751	NM_001033369	ENSMUSG00000026834	Acvr1c	ACTR-IC|ACVRLK7|ALK7|Alk-7|C230097P10	activin A receptor, type IC	protein-coding	1.414	0.945	0.702	0.563	0.873	0.921	1.273	nan	1.420	0.934	3.053	3.276	1.462	1.439	0.853	1.049	1.765	0.882	2.640	2.885	2.464	1.913	5.475	5.448	0.566
5906	chr16	22540944	22549918	+	0	NA	intron (NM_001346673, intron 19 of 23)	intron (NM_001346673, intron 19 of 23)	-13247	NR_106170	102465887		NR_106170	ENSMUSG00000099071	Mir8095	Gm27566|mmu-mir-8095	microRNA 8095	ncRNA	5.618	2.568	1.067	4.520	3.739	1.977	4.406	4.362	4.283	5.998	1.030	1.080	7.396	7.648	6.021	8.155	5.834	7.619	1.049	1.038	0.887	2.439	0.826	0.617	9.673
14919	chr9	22220605	22224021	+	0	NA	intron (NR_030448, intron 1 of 4)	intron (NR_030448, intron 1 of 4)	-3390	NM_172763	235047	Mm.290849	NM_172763	ENSMUSG00000057982	Zfp809	BB114266|C330026E23	zinc finger protein 809	protein-coding	5.885	0.681	0.512	3.400	1.916	1.136	4.220	4.296	3.957	5.052	0.557	0.726	6.321	6.544	4.284	4.521	4.802	4.169	0.999	1.190	0.900	1.809	0.758	0.662	5.638
7448	chr18	85102852	85104826	+	0	NA	Intergenic	Intergenic	-152315	NM_025969	67105	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	tranlocase of inner mitochondrial membrane 21	protein-coding	4.779	0.782	0.841	1.333	5.591	2.230	1.832	3.837	1.508	3.114	0.469	0.504	2.512	3.976	1.697	3.064	3.014	3.965	0.673	0.719	0.855	0.622	1.105	0.637	2.847
11323	chr5	67817977	67819319	+	0	NA	intron (NM_001284345, intron 1 of 36)	ID_B1|SINE|B4	28783	NM_009727	11980	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	2.632	3.027	0.529	2.983	3.659	4.420	1.840	0.618	1.493	11.918	1.965	0.982	0.349	2.729	2.531	1.988	1.942	4.439	5.487	2.053	6.010	5.015	4.174	11.550	6.477
8504	chr2	103300553	103302764	+	0	NA	intron (NM_007914, intron 1 of 8)	intron (NM_007914, intron 1 of 8)	1538	NM_007914	13661	Mm.10724	NM_007914	ENSMUSG00000012350	Ehf	9030625L19Rik|AU019492	ets homologous factor	protein-coding	4.798	0.953	0.662	3.449	1.159	0.765	5.619	5.361	5.048	3.566	0.715	0.991	6.211	5.772	6.244	8.322	5.330	6.657	0.818	1.017	0.161	nan	0.393	0.294	4.316
12341	chr6	82700552	82725473	+	0	NA	Intergenic	Intergenic	-60147	NM_025882	66979	Mm.195753	NM_025882	ENSMUSG00000030042	Pole4	2400007P05Rik|5830430F06Rik	polymerase (DNA-directed), epsilon 4 (p12 subunit)	protein-coding	4.815	3.623	1.996	4.957	5.418	3.473	6.749	6.220	4.702	6.026	3.681	1.605	6.166	10.055	7.547	nan	5.809	7.314	0.982	1.070	0.856	0.929	0.624	0.465	nan
8149	chr2	32779960	32784812	+	0	NA	intron (NM_025619, intron 1 of 8)	intron (NM_025619, intron 1 of 8)	2019	NM_025619	227736	Mm.441499	NM_025619	ENSMUSG00000038987	Cfap157	1700019L03Rik	cilia and flagella associated protein 157	protein-coding	5.649	1.057	0.472	5.835	3.937	1.727	5.862	7.154	4.078	5.117	2.217	2.184	5.831	7.535	7.492	9.299	4.731	6.934	0.813	0.477	0.600	1.382	0.463	0.474	11.661
11488	chr5	102306185	102308461	+	0	NA	Intergenic	B4A|SINE|B4	-174068	NM_146161	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	2.199	0.510	0.171	1.611	1.459	0.497	2.628	2.444	2.509	3.897	0.390	0.431	2.523	3.696	3.906	3.568	2.568	3.770	0.750	0.432	0.333	0.888	0.448	0.233	3.206
14317	chr8	73314896	73318490	+	0	NA	intron (NM_010687, intron 1 of 14)	Lx4A|LINE|L1	36847	NM_001317391	16795	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	3.465	6.381	1.421	4.899	2.012	0.668	2.662	5.602	nan	4.137	2.506	1.278	3.416	3.823	5.329	5.428	2.851	4.629	3.310	1.929	1.599	6.138	2.326	1.699	6.784
9915	chr4	8775820	8788269	+	0	NA	intron (NM_001277149, intron 2 of 37)	intron (NM_001277149, intron 2 of 37)	91638	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.721	2.301	0.803	0.661	0.265	0.219	0.247	nan	0.679	0.548	0.416	0.282	0.340	0.453	0.727	0.718	0.402	0.893	2.006	nan	1.276	6.878	0.817	0.522	0.775
7822	chr19	46403013	46404440	+	0	NA	intron (NM_001025391, intron 2 of 11)	B1F|SINE|Alu	6830	NM_015752	24069	Mm.41210	NM_015752	ENSMUSG00000025231	Sufu	Su(fu)	suppressor of fused homolog (Drosophila)	protein-coding	4.446	8.763	2.008	8.025	2.217	1.816	5.502	7.922	2.941	8.498	4.675	2.916	3.742	5.425	8.246	8.633	4.362	7.036	2.291	1.379	2.181	6.820	2.188	4.287	15.619
13115	chr7	31757576	31760140	+	0	NA	Intergenic	RLTR6C_Mm|LTR|ERV1	46193	NM_001270542	626305	Mm.454021	NM_001270542	ENSMUSG00000078759	Scgb1b7	ABPA7_A29|Abpa29|Abpa7|EG626305|Gm6662	secretoglobin, family 1B, member 7	protein-coding	8.591	3.735	1.321	8.165	3.041	1.356	8.883	11.790	6.301	10.482	6.417	4.328	9.711	9.342	11.346	10.451	5.764	10.652	7.046	2.585	2.227	7.809	4.018	2.942	16.423
10125	chr4	59201628	59210339	+	0	NA	intron (NM_011673, intron 1 of 8)	intron (NM_011673, intron 1 of 8)	16433	NM_011673	22234	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	4.982	5.516	3.014	4.273	3.822	2.634	nan	6.369	3.483	4.885	1.235	2.170	3.475	5.045	4.141	4.094	2.647	4.277	4.057	3.249	2.428	6.041	3.102	2.986	5.304
8445	chr2	91472993	91478025	+	0	NA	intron (NM_172668, intron 8 of 37)	B4A|SINE|B4	17978	NM_001145857	228357	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	0.834	1.065	0.452	0.904	0.412	0.261	0.862	6.247	0.699	0.642	0.630	1.851	0.775	0.657	0.838	1.345	0.943	1.067	4.642	2.066	2.318	5.183	4.469	4.224	1.073
343	chr1	78609462	78612503	+	0	NA	Intergenic	Intergenic	-46843	NM_001033606	74205	Mm.276016	NM_028817	ENSMUSG00000032883	Acsl3	2610510B12Rik|Acs3|C85929|Facl3|Pro2194	acyl-CoA synthetase long-chain family member 3	protein-coding	5.112	0.376	0.372	1.285	0.710	0.838	3.564	3.204	1.738	2.162	0.796	0.854	3.436	3.169	3.880	nan	3.756	nan	nan	nan	0.321	0.594	nan	0.422	nan
13088	chr7	30302275	30304654	+	0	NA	exon (NM_001081114, exon 10 of 14)	exon (NM_001081114, exon 10 of 14)	-5289	NM_198027	233065	Mm.276277	NM_198027	ENSMUSG00000042831	Alkbh6	AI839550|Abh6|C130099A02	alkB homolog 6	protein-coding	6.488	5.886	1.068	8.857	2.010	1.676	5.944	9.537	5.951	11.927	6.492	3.666	8.220	8.606	10.663	10.493	4.219	11.570	4.297	1.870	1.536	7.335	1.922	2.690	15.176
3910	chr13	29009040	29010240	+	0	NA	Intergenic	L1_Mus3|LINE|L1	-4774	NR_045077	77920	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA	3.657	1.419	0.334	1.431	1.858	0.905	3.959	4.190	2.034	2.277	6.452	2.359	2.650	3.617	2.401	2.692	1.911	2.299	1.609	1.050	0.367	1.793	0.849	0.537	3.044
6230	chr16	93533032	93535708	+	0	NA	Intergenic	Intergenic	69445	NM_145482	224440	Mm.10628	NM_145482	ENSMUSG00000022948	Setd4	AY037804|C21orf18|ORF21	SET domain containing 4	protein-coding	7.508	0.726	0.379	1.592	0.708	0.216	2.343	4.793	nan	2.134	4.265	1.693	5.541	2.639	nan	3.620	4.026	nan	nan	1.376	0.340	2.084	0.882	0.559	5.490
5840	chr16	17720415	17723053	+	0	NA	intron (NM_001285886, intron 1 of 16)	B1_Mus1|SINE|Alu	1166	NM_001285886	94112	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	11.070	6.572	3.578	6.887	7.230	5.434	5.540	10.575	5.210	7.074	5.167	3.143	7.197	11.525	6.633	9.428	8.051	6.776	3.724	3.153	2.734	3.633	2.814	2.548	10.705
13029	chr7	26538184	26541710	+	0	NA	intron (NM_001302792, intron 1 of 8)	L1_Mus3|LINE|L1	4924	NM_001048219	233001	Mm.11889	NM_194056	ENSMUSG00000054102	Nlrp9a	D7Ertd565e|Nalp-theta|Nalp9a	NLR family, pyrin domain containing 9A	protein-coding	10.937	15.735	5.739	10.332	5.815	3.976	9.561	12.161	6.020	11.264	8.842	3.888	9.762	12.630	10.145	10.819	7.537	9.207	6.242	4.981	3.800	6.682	6.449	5.029	13.845
857	chr1	170264498	170265597	+	0	NA	Intergenic	Intergenic	-12277	NM_012009	26904	Mm.57009	NM_012009	ENSMUSG00000102418	Sh2d1b1	EAT-2|EAT-2A|Eat2|Eat2a|Sh2d1b	SH2 domain containing 1B1	protein-coding	4.602	0.314	0.113	2.868	2.268	0.869	3.767	3.017	2.589	2.801	4.560	2.857	3.639	4.327	4.614	5.125	3.224	3.976	0.626	0.318	0.229	1.159	nan	0.632	4.561
707	chr1	139794787	139798140	+	0	NA	Intergenic	RLTR13C3|LTR|ERVK	-15224	NM_001160303	214403	Mm.337613	NM_001029977	ENSMUSG00000070594	Gm4788	Cfhrc|EG214403	predicted gene 4788	protein-coding	11.219	3.015	2.200	5.755	4.237	1.923	4.957	3.862	6.213	7.351	8.234	2.386	6.502	5.057	4.652	8.782	5.282	8.159	0.952	2.219	1.937	1.086	0.564	0.619	nan
5738	chr15	103110424	103112437	+	0	NA	Intergenic	B3|SINE|B2	35398	NR_045743	432989	Mm.383979	NR_045743	ENSMUSG00000097003	D930007P13Rik	-	Riken cDNA D930007P13 gene	ncRNA	7.127	nan	1.031	1.282	1.741	0.946	8.149	7.221	1.914	2.538	0.814	0.605	5.394	3.638	3.535	4.019	6.870	2.801	0.587	1.585	1.045	0.648	0.585	0.762	2.705
15801	chrX	106027866	106030623	+	0	NA	intron (NM_001109757, intron 1 of 22)	intron (NM_001109757, intron 1 of 22)	2020	NM_009726	11977	Mm.254297	NM_009726	ENSMUSG00000033792	Atp7a	MNK	ATPase, Cu++ transporting, alpha polypeptide	protein-coding	6.421	5.608	2.531	4.511	4.861	2.188	4.442	4.263	3.203	4.876	3.841	2.369	3.989	6.436	4.167	5.112	4.229	4.340	3.574	2.498	1.808	2.966	2.846	2.492	7.194
9262	chr3	41408568	41410993	+	0	NA	Intergenic	Intergenic	83419	NR_040385	78706	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	4.240	1.334	0.497	1.213	2.336	1.204	7.368	4.193	nan	3.938	2.152	1.419	5.896	6.355	6.130	3.658	1.876	3.787	nan	0.397	0.439	1.360	1.849	0.968	4.684
8475	chr2	101819630	101821396	+	0	NA	intron (NM_001110849, intron 2 of 9)	intron (NM_001110849, intron 2 of 9)	18467	NM_001110849	72446	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	nan	0.491	0.278	2.408	0.907	0.211	3.125	3.733	2.541	2.566	0.394	0.292	3.453	4.114	2.852	5.141	2.970	4.107	0.378	0.460	0.195	1.292	0.585	0.268	5.015
13560	chr7	116771673	116775394	+	0	NA	Intergenic	ORR1A1-int|LTR|ERVL-MaLR	269164	NM_001130479	53322	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	6.409	1.435	1.011	5.446	4.978	2.994	3.118	5.673	3.668	3.484	6.265	3.008	3.532	3.968	3.399	3.373	3.281	5.745	2.222	1.339	1.029	1.300	2.185	1.867	4.603
261	chr1	65222086	65226576	+	0	NA	intron (NM_001310624, intron 12 of 41)	intron (NM_001310624, intron 12 of 41)	37646	NM_001310624	18711	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE finger containing	protein-coding	12.283	4.205	1.559	7.145	3.072	1.730	6.857	7.776	5.854	5.641	5.143	3.453	7.923	7.871	8.317	12.448	8.078	8.272	2.550	1.879	1.161	2.689	2.031	1.439	8.210
13611	chr7	119356055	119358966	+	0	NA	Intergenic	Intergenic	101762	NM_025989	67133	Mm.46403	NM_025989	ENSMUSG00000030954	Gp2	2310037I18Rik|AV060639	glycoprotein 2 (zymogen granule membrane)	protein-coding	4.068	1.549	0.636	5.296	3.029	1.155	8.295	6.463	4.861	4.750	1.865	2.366	7.210	8.245	9.220	7.763	4.674	7.173	3.709	1.344	1.044	2.433	3.578	2.473	8.575
8716	chr2	138081819	138083874	+	0	NA	Intergenic	Intergenic	-173738	NM_001025431	228662	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	7.662	1.798	0.629	8.156	2.795	3.196	7.083	9.165	5.531	12.279	7.887	3.724	6.745	7.143	8.138	10.102	7.804	7.980	5.334	2.589	3.336	6.761	3.762	3.723	13.321
10649	chr4	133169026	133172037	+	0	NA	intron (NM_153423, intron 1 of 8)	intron (NM_153423, intron 1 of 8)	-25124	NR_105984	102466215		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	nan	3.409	1.372	5.234	5.967	2.634	3.870	6.626	nan	2.796	2.349	1.611	2.626	6.397	5.472	5.962	2.585	6.300	1.488	0.795	0.748	2.135	nan	0.556	7.797
4685	chr14	55706624	55711798	+	0	NA	intron (NM_019984, intron 7 of 14)	intron (NM_019984, intron 7 of 14)	3877	NM_019984	21816	Mm.41964	NM_019984	ENSMUSG00000022218	Tgm1	2310004J08Rik|Tgase1	transglutaminase 1, K polypeptide	protein-coding	2.324	nan	1.871	2.250	2.150	1.070	2.215	2.987	1.456	1.903	1.078	1.406	1.133	2.396	2.062	2.265	2.112	1.931	5.324	7.775	4.682	6.727	5.774	5.298	2.951
13176	chr7	52492249	52497470	+	0	NA	Intergenic	Intergenic	-479143	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	1.867	14.704	7.035	2.529	0.893	0.328	0.819	1.056	1.231	1.867	1.082	0.558	0.666	1.027	1.362	1.358	1.048	1.600	0.758	1.117	1.033	0.638	0.576	0.410	2.180
2439	chr11	72984022	72993150	+	0	NA	intron (NM_001163336, intron 19 of 20)	intron (NM_001163336, intron 19 of 20)	-10559	NM_008771	18436	Mm.25722	NM_008771	ENSMUSG00000020787	P2rx1	AI323649|BB122383|P2x|Pdcd3|RP-2	purinergic receptor P2X, ligand-gated ion channel, 1	protein-coding	7.176	3.485	1.239	7.242	3.902	2.351	6.561	7.299	5.712	7.673	4.782	2.572	8.133	8.931	8.256	9.980	6.513	8.644	1.654	1.414	1.209	3.082	nan	1.010	9.013
9880	chr3	151851736	151857097	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-16888	NM_008966	19220	Mm.331442	NM_008966	ENSMUSG00000028036	Ptgfr	AI957154|PGF|fp	prostaglandin F receptor	protein-coding	7.153	1.882	0.829	6.500	3.317	2.125	5.092	5.041	5.653	6.190	3.567	3.094	3.246	5.466	5.508	5.616	6.461	7.004	1.755	1.583	0.820	2.082	1.069	0.987	5.060
7768	chr19	41412378	41425668	+	0	NA	Intergenic	LTR33|LTR|ERVL	-33953	NM_031376	83490	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	nan	12.222	5.327	2.210	1.528	0.744	1.965	nan	1.596	1.746	2.009	0.675	1.501	1.662	1.799	2.274	nan	2.749	1.526	1.591	1.061	2.113	1.616	1.444	2.552
10980	chr4	154496072	154497424	+	0	NA	intron (NM_001177995, intron 2 of 15)	intron (NM_001177995, intron 2 of 15)	139619	NR_045643	320939	Mm.436738	NR_045643		5930403L14Rik	-	RIKEN cDNA 5930403L14 gene	ncRNA	2.737	1.208	0.560	3.204	1.841	1.422	3.781	2.359	2.625	2.977	1.930	2.110	2.540	4.292	3.172	4.918	2.840	3.793	1.103	0.698	1.164	1.401	1.214	1.399	5.402
15714	chrX	39415818	39423898	+	0	NA	Intergenic	L1_Mus1|LINE|L1	73592	NM_001177380	78631	Mm.243738	NM_001177380	ENSMUSG00000079619	Cypt15	1700085A12Rik	cysteine-rich perinuclear theca 15	protein-coding	6.131	2.111	1.414	3.845	5.637	3.517	4.400	5.830	4.560	5.893	3.358	3.356	5.214	7.018	3.784	4.405	5.039	4.710	2.302	1.910	1.502	2.516	1.922	1.767	3.815
13941	chr7	151418853	151421566	+	0	NA	Intergenic	Intergenic	6105374	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	4.279	nan	0.489	nan	3.599	1.985	5.999	7.960	nan	1.469	0.588	0.487	3.341	4.953	3.024	2.754	3.598	2.035	0.671	0.981	1.358	1.074	nan	0.610	3.755
10723	chr4	135772697	135777215	+	0	NA	intron (NM_001085509, intron 9 of 36)	intron (NM_001085509, intron 9 of 36)	15241	NM_001085509	242702	Mm.318639	NM_001085509	ENSMUSG00000037139	Myom3	8430427K15Rik|Gm434	myomesin family, member 3	protein-coding	4.340	2.246	0.804	4.228	3.295	2.373	4.935	2.541	nan	4.346	1.370	1.728	4.708	5.592	5.130	6.093	4.769	nan	2.652	2.812	2.325	5.588	nan	3.107	4.547
2896	chr11	106252954	106254683	+	0	NA	exon (NM_025310, exon 6 of 21)	exon (NM_025310, exon 6 of 21)	1984	NM_025310	56095	Mm.29795	NM_025310	ENSMUSG00000020706	Ftsj3	AA537063|AU045295|C79843|D11Ertd400e|Epcs3	FtsJ RNA methyltransferase homolog 3 (E. coli)	protein-coding	2.094	1.904	1.514	1.968	1.907	1.607	2.905	3.232	nan	1.768	0.594	0.854	1.927	3.020	2.392	2.873	1.810	2.261	2.114	1.303	1.696	nan	3.022	3.624	1.637
12156	chr6	34866775	34869582	+	0	NA	intron (NM_197986, intron 1 of 1)	(G)n|Simple_repeat|Simple_repeat	5032	NM_197986	68487	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	2.740	0.668	0.774	0.747	0.647	0.346	2.378	1.279	1.279	1.459	0.510	0.216	2.516	3.643	3.539	nan	3.588	nan	nan	0.387	0.314	nan	nan	0.349	4.137
5183	chr15	56602538	56607057	+	0	NA	Intergenic	Intergenic	-85147	NR_002874	594843	Mm.484850	NR_002874	ENSMUSG00000086541	Has2os	EG594843|Has2as|Hasnt	hyaluronan synthase 2, opposite strand	ncRNA	0.401	0.396	0.317	nan	0.147	0.080	nan	nan	nan	nan	4.899	0.668	0.993	0.462	0.689	nan	0.687	0.639	0.844	0.491	0.298	0.452	0.821	0.323	0.278
9777	chr3	122575691	122578209	+	0	NA	intron (NM_153118, intron 2 of 13)	Lx8b|LINE|L1	-35269	NR_106117	102465764		NR_106117	ENSMUSG00000104773	Mir7657	mmu-mir-7657	microRNA 7657	ncRNA	1.567	0.461	0.218	0.400	0.380	0.148	2.119	3.556	1.105	nan	3.259	5.015	0.801	1.216	1.822	nan	0.925	1.722	0.932	0.376	0.229	1.099	nan	0.308	nan
9013	chr2	167124547	167126600	+	0	NA	intron (NM_008420, intron 1 of 1)	intron (NM_008420, intron 1 of 1)	60280	NR_028540	100217443		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	1.956	1.713	0.497	1.853	0.745	0.648	0.615	1.095	1.011	1.291	0.431	0.747	0.644	nan	1.011	1.468	1.067	nan	9.806	5.163	6.049	9.983	8.544	7.338	nan
4884	chr14	78686728	78688870	+	0	NA	intron (NM_001081336, intron 1 of 28)	(TTTTC)n|Simple_repeat|Simple_repeat	37290	NM_001081336	380921	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	3.511	1.045	0.305	2.242	1.068	0.800	2.281	2.699	2.508	2.575	1.061	0.513	5.140	5.040	4.183	4.740	3.728	2.852	0.614	0.574	0.114	0.750	0.399	0.224	3.667
3407	chr12	71925184	71928798	+	0	NA	intron (NM_172464, intron 3 of 25)	intron (NM_172464, intron 3 of 25)	37448	NM_001286452	208846	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	9.167	5.090	1.810	8.912	3.198	2.026	6.971	5.227	4.379	7.718	6.985	2.778	8.069	8.718	9.009	9.738	6.775	8.531	1.740	1.538	1.577	3.091	1.210	1.386	14.436
7079	chr18	24269978	24271741	+	0	NA	intron (NM_001160404, intron 8 of 12)	intron (NM_001160404, intron 8 of 12)	64865	NM_001160404	14423	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	3.439	1.975	1.217	2.587	3.856	2.024	3.426	4.347	4.014	3.975	5.499	5.129	2.833	4.084	2.539	2.670	1.661	4.244	2.885	1.615	1.613	3.951	1.212	1.145	3.278
7072	chr18	23686417	23689974	+	0	NA	Intergenic	Lx4B|LINE|L1	64110	NR_126066	100502834	Mm.213614	NR_126066	ENSMUSG00000086287	Gm15972	OTTMUSG00000028454	predicted gene 15972	ncRNA	4.633	0.401	0.221	2.708	3.288	1.769	2.392	4.134	2.766	4.320	0.926	0.598	3.971	6.648	2.023	nan	3.134	5.033	nan	0.980	0.793	nan	1.040	0.744	2.480
5900	chr16	22262933	22266016	+	0	NA	intron (NM_001330555, intron 1 of 9)	intron (NM_001330555, intron 1 of 9)	1531	NM_001330554	20462	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta homolog (Drosophila)	protein-coding	9.307	13.914	3.997	9.997	4.560	2.890	7.257	9.878	6.373	9.550	5.304	4.469	9.578	9.460	10.545	12.416	7.020	10.616	6.692	2.153	2.562	7.089	2.916	3.692	12.198
12123	chr6	31155750	31157338	+	0	NA	intron (NR_110471, intron 2 of 3)	B1F|SINE|Alu	61930	NR_110470	232685	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	5.051	2.426	1.518	3.644	2.169	0.962	4.579	3.459	2.596	2.937	3.422	2.007	5.859	4.674	4.806	6.567	4.785	6.064	1.748	1.130	0.579	1.293	2.244	1.133	4.789
3980	chr13	37566714	37578508	+	0	NA	Intergenic	Intergenic	227266	NM_010745	17084	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	6.392	nan	0.828	6.657	4.397	2.705	nan	nan	nan	8.387	1.614	1.512	4.846	8.874	4.271	nan	4.136	nan	0.990	1.509	1.375	1.357	1.100	0.963	nan
14394	chr8	85855876	85857046	+	0	NA	intron (NM_199446, intron 2 of 31)	intron (NM_199446, intron 2 of 31)	15459	NM_199446	102093	Mm.237296	NM_199446	ENSMUSG00000036879	Phkb	AI463271	phosphorylase kinase beta	protein-coding	5.244	7.615	2.158	7.994	3.273	0.805	2.704	7.021	3.591	8.076	3.874	3.821	5.277	5.838	7.041	8.777	3.506	6.889	4.777	1.891	1.552	5.901	1.825	2.283	9.005
11928	chr5	144872957	144877693	+	0	NA	Intergenic	Intergenic	21491	NR_106006	102465629		NR_106006	ENSMUSG00000098822	Mir7039	Gm27824|mmu-mir-7039	microRNA 7039	ncRNA	2.747	1.013	0.539	nan	2.041	1.319	2.707	3.155	nan	2.440	1.437	1.481	2.826	4.023	2.918	3.011	3.281	3.708	1.510	0.722	0.842	1.122	1.340	1.081	2.486
2933	chr11	108781295	108783681	+	0	NA	intron (NM_145688, intron 3 of 6)	intron (NM_145688, intron 3 of 6)	99870	NM_029586	76380	Mm.344071	NM_029586	ENSMUSG00000020728	Cep112	1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco	centrosomal protein 112	protein-coding	4.859	4.725	1.614	8.806	3.629	2.855	4.438	2.064	nan	nan	3.461	1.135	2.115	4.409	4.115	4.293	2.697	nan	5.159	2.405	5.955	6.268	3.998	6.808	11.476
13123	chr7	35050476	35054789	+	0	NA	intron (NM_009884, intron 1 of 1)	intron (NM_009884, intron 1 of 1)	3934	NM_009884	12611	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	4.539	1.751	1.072	5.743	5.798	2.540	5.264	3.643	3.754	3.017	1.529	1.531	6.549	6.862	4.424	3.618	2.897	7.634	2.161	1.384	0.625	2.915	1.048	0.813	3.823
10686	chr4	134469761	134476526	+	0	NA	intron (NM_019641, intron 4 of 4)	intron (NM_019641, intron 4 of 4)	4823	NM_019641	16765	Mm.378957	NM_019641	ENSMUSG00000028832	Stmn1	19k|Lag|Lap18|Op18|P18|P19|Pig|Pp17|Pp18|Pp19|Pr22|Smn	stathmin 1	protein-coding	4.655	8.880	4.805	4.871	3.155	2.688	2.047	3.092	nan	3.962	2.849	1.590	2.485	3.649	3.386	3.745	2.726	nan	7.271	5.754	6.895	9.273	nan	10.855	3.861
12620	chr6	115583481	115585672	+	0	NA	3' UTR (NM_001101431, exon 4 of 4)	3' UTR (NM_001101431, exon 4 of 4)	8000	NM_001101431	70291	Mm.133694	NM_001101431	ENSMUSG00000068011	Mkrn2os	2510049J12Rik	makorin, ring finger protein 2, opposite strand	protein-coding	2.764	0.838	0.293	1.381	1.726	0.445	4.077	4.749	3.325	2.910	1.156	1.551	4.308	4.246	5.194	5.767	3.274	4.021	1.403	0.409	0.190	1.017	nan	0.346	2.982
531	chr1	121996144	121997551	+	0	NA	Intergenic	Intergenic	-428867	NM_025860	66942	Mm.44219	NM_025860	ENSMUSG00000001674	Ddx18	2310005B10Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding	3.006	1.496	1.103	1.569	1.333	0.813	2.315	2.978	1.762	1.636	0.559	0.499	1.830	4.629	2.571	1.971	1.653	1.452	0.372	0.428	0.309	0.503	0.198	0.453	1.930
15667	chrX	7782394	7784546	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-6523	NM_001290455	54645	Mm.194811	NM_207670	ENSMUSG00000031153	Gripap1	AI854681|DXImx47e|GRASP-1|Sfc10|mKIAA1167	GRIP1 associated protein 1	protein-coding	2.783	0.927	0.633	2.984	1.629	0.662	2.734	2.927	3.860	4.103	2.518	2.085	3.272	4.490	2.672	4.076	2.268	2.541	1.295	0.619	0.562	1.164	0.877	0.892	5.150
11872	chr5	139682985	139685403	+	0	NA	Intergenic	Intergenic	52139	NM_174850	231830	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	1.339	0.810	0.617	2.120	3.727	2.524	2.874	3.657	2.824	2.622	3.727	1.833	2.221	4.721	2.401	2.538	1.755	2.702	1.580	1.620	1.739	2.061	nan	2.677	1.545
15250	chr9	69286109	69292449	+	0	NA	promoter-TSS (NM_001289916)	promoter-TSS (NM_001289916)	-562	NM_001289916	19883	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	6.210	1.766	0.974	3.317	4.116	2.313	4.074	5.350	4.027	4.248	4.839	3.201	4.414	5.693	5.140	5.861	4.369	5.061	nan	1.460	1.238	1.554	1.772	1.411	5.037
10877	chr4	147992672	148000021	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-4376	NM_008725	230899	Mm.482123	NM_008725	ENSMUSG00000041616	Nppa	ANP|Anf|Pnd	natriuretic peptide type A	protein-coding	3.305	nan	1.107	2.513	4.798	3.996	5.617	5.395	4.113	3.556	3.445	2.070	5.210	6.979	4.658	3.974	2.851	3.803	2.122	1.315	1.639	1.833	2.653	2.534	3.889
15481	chr9	107468759	107473895	+	0	NA	intron (NM_001174047, intron 3 of 38)	intron (NM_001174047, intron 3 of 38)	34591	NR_039580	100628590		NR_039580	ENSMUSG00000092761	Mir5120	mmu-mir-5120|mu-mir-5120	microRNA 5120	ncRNA	5.477	4.039	1.192	9.673	2.013	1.218	4.867	7.762	4.923	nan	7.522	3.364	4.242	5.896	6.350	7.686	2.857	nan	2.644	1.894	1.241	4.432	1.645	1.390	9.656
2111	chr11	44557167	44560694	+	0	NA	intron (NM_028862, intron 8 of 10)	intron (NM_028862, intron 8 of 10)	-27387	NR_126460	75389	Mm.261421	NR_126460	ENSMUSG00000086501	4930597A21Rik	-	RIKEN cDNA 4930597A21 gene	ncRNA	0.513	6.209	2.745	0.734	0.081	0.077	0.227	nan	0.372	0.650	0.250	0.304	0.145	0.234	0.564	nan	0.407	nan	nan	0.234	0.277	nan	nan	0.398	0.272
721	chr1	145548496	145551356	+	0	NA	Intergenic	Lx8b|LINE|L1	-774505	NM_022881	64214	Mm.253927	NM_022881	ENSMUSG00000026357	Rgs18	-	regulator of G-protein signaling 18	protein-coding	9.896	6.056	3.006	6.321	7.207	5.498	10.347	8.237	4.998	9.376	4.213	3.776	9.641	8.887	6.839	11.176	10.697	6.413	4.640	4.174	3.496	3.751	5.569	5.531	9.643
1897	chr11	3809805	3814982	+	0	NA	intron (NM_152818, intron 2 of 13)	RMER15|LTR|ERVL	51510	NM_152818	74309	Mm.61022	NM_152818	ENSMUSG00000020435	Osbp2	1700095P05Rik|C630001G20Rik|Gm244|ORP-4|OSBPL1	oxysterol binding protein 2	protein-coding	6.297	2.968	0.883	7.679	2.852	1.836	4.979	6.318	4.197	5.784	5.323	2.598	6.109	8.223	7.779	8.761	4.050	7.186	3.208	nan	1.924	3.777	1.510	1.394	10.353
13872	chr7	147221181	147222194	+	0	NA	Intergenic	Intergenic	1906852	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	6.190	8.102	4.123	5.003	4.695	3.735	5.152	6.547	2.901	5.483	7.206	3.366	4.036	4.570	4.966	6.879	4.252	5.201	6.516	5.290	5.785	7.402	6.339	6.122	8.241
3482	chr12	80457578	80460711	+	0	NA	Intergenic	RMER19A|LTR|ERVK	-3951	NM_133798	97827	Mm.206631	NM_133798	ENSMUSG00000032705	Exd2	4930539P14Rik|C85658|Exdl2	exonuclease 3'-5' domain containing 2	protein-coding	4.832	1.544	1.029	2.687	1.792	0.976	4.828	3.806	3.385	3.288	3.682	1.522	5.795	4.244	3.497	5.301	7.313	3.310	0.809	1.179	0.576	0.908	0.973	0.615	3.073
14644	chr8	119779691	119792932	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-7895	NM_028883	74347	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	7.065	5.488	1.821	5.566	4.835	3.520	6.549	9.344	4.536	7.189	4.736	3.382	7.187	7.515	6.329	nan	6.307	5.525	4.102	3.280	3.567	6.073	3.808	3.931	9.778
669	chr1	136912431	136919233	+	0	NA	intron (NM_030676, intron 6 of 8)	intron (NM_030676, intron 6 of 8)	37798	NM_001159769	26424	Mm.16794	NM_030676	ENSMUSG00000026398	Nr5a2	AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B	nuclear receptor subfamily 5, group A, member 2	protein-coding	2.061	0.699	0.303	nan	2.338	1.202	2.677	1.835	2.251	2.662	3.207	1.248	4.556	4.604	2.949	7.597	2.469	1.801	0.456	0.369	0.215	0.567	0.366	0.240	nan
420	chr1	90451368	90453005	+	0	NA	Intergenic	Intergenic	-151239	NM_133805	108679	Mm.119177	NM_133805	ENSMUSG00000034432	Cops8	9430009J09Rik|AA408242|Csn8|Sgn8	COP9 signalosome subunit 8	protein-coding	1.368	1.256	0.652	0.611	1.296	0.659	1.269	0.705	1.647	0.898	4.486	1.443	1.312	1.919	0.750	1.301	0.682	1.456	0.892	1.193	0.687	1.372	1.107	0.493	0.688
5682	chr15	100591467	100595040	+	0	NA	intron (NM_001304965, intron 2 of 10)	intron (NM_001304965, intron 2 of 10)	6731	NM_001304965	19009	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	4.221	6.261	2.227	2.822	2.219	1.035	5.038	7.571	3.064	5.991	1.539	1.102	8.244	4.392	5.474	4.119	4.224	3.762	3.313	1.778	1.382	4.337	2.140	2.003	5.312
11334	chr5	72673796	72678361	+	0	NA	Intergenic	Intergenic	28282	NM_001081205	70701	Mm.38884	NM_001081205	ENSMUSG00000067219	Nipal1	3830408G10Rik|Npal1	NIPA-like domain containing 1	protein-coding	3.603	0.765	0.598	3.496	3.852	2.456	3.510	1.773	5.609	6.219	1.191	1.257	5.079	5.088	4.651	6.325	3.541	7.010	3.662	2.556	1.493	nan	2.870	1.872	3.783
14199	chr8	46698879	46701496	+	0	NA	Intergenic	B1_Mur1|SINE|Alu	39328	NR_045750	100503498	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	6.774	0.644	0.460	2.603	3.048	1.754	3.628	6.889	3.184	3.646	3.775	1.500	5.897	3.311	4.023	5.172	6.450	4.751	2.709	2.234	1.089	5.814	0.852	0.751	6.071
1348	chr10	61784589	61788125	+	0	NA	Intergenic	Tigger5|DNA|TcMar-Tigger	-2493	NM_207000	404634	Mm.272870	NM_207000	ENSMUSG00000020086	H2afy2	macroH2A2	H2A histone family, member Y2	protein-coding	1.515	0.829	0.855	1.540	5.185	4.051	0.528	1.337	1.682	1.526	0.914	1.798	0.853	1.590	0.912	1.072	1.268	1.491	nan	1.672	1.696	1.360	1.480	1.910	nan
5656	chr15	99800745	99805625	+	0	NA	intron (NM_023063, intron 3 of 7)	ID_B1|SINE|B4	16964	NM_023063	65970	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	7.342	5.287	2.642	6.370	4.546	3.873	8.002	11.834	4.756	6.782	4.005	2.936	7.415	7.569	6.135	6.490	8.208	5.562	2.963	2.247	2.879	2.924	2.541	3.125	7.316
15149	chr9	60324799	60327935	+	0	NA	intron (NM_001040426, intron 6 of 17)	RMER19C|LTR|ERVK	184668	NM_001040426	207596	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	3.131	0.371	0.378	2.375	1.426	1.372	2.866	nan	3.802	3.817	0.670	1.435	4.369	3.144	2.683	4.046	3.216	3.894	1.076	0.762	1.322	0.991	1.203	1.422	4.056
8412	chr2	84552831	84557912	+	0	NA	Intergenic	Intergenic	-48498	NR_046046	672763	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	OTTMUSG00000013441	predicted gene 13710	ncRNA	8.006	6.570	2.828	7.346	3.033	1.838	7.676	8.869	5.409	8.268	6.204	3.921	7.821	8.394	6.678	9.386	8.023	7.623	4.215	2.643	2.038	3.378	2.650	2.692	10.283
7147	chr18	36046041	36049800	+	0	NA	intron (NM_001167891, intron 2 of 9)	intron (NM_001167891, intron 2 of 9)	-58283	NR_015571	74966	Mm.379238	NM_030089		4930471G03Rik	1700007N01Rik	RIKEN cDNA 4930471G03 gene	ncRNA	1.223	6.071	1.444	3.331	1.199	0.722	0.894	0.970	0.971	2.438	0.448	1.123	0.482	nan	1.361	nan	0.654	1.357	6.999	3.566	5.361	8.938	4.723	7.276	2.292
1137	chr10	19683814	19687007	+	0	NA	Intergenic	MTE2b|LTR|ERVL-MaLR	-27177	NM_172786	237313	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	5.651	1.456	0.539	2.572	2.711	1.097	3.103	3.951	3.931	3.777	1.988	2.177	3.366	4.941	4.064	4.625	3.875	4.907	1.262	0.672	0.537	1.954	0.995	0.571	5.397
9724	chr3	116077237	116078520	+	0	NA	Intergenic	Intergenic	51810	NM_011693	22329	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	3.914	2.642	1.792	4.200	1.791	0.473	2.242	2.571	3.227	3.453	4.737	4.133	3.248	2.229	1.785	2.833	3.067	4.387	3.550	1.744	0.461	1.670	2.658	1.755	1.802
12414	chr6	87859137	87867711	+	0	NA	Intergenic	Intergenic	-12318	NM_001347325	12785	Mm.290251	NM_013493	ENSMUSG00000030057	Cnbp	AA408710|Cnbp1|Znf9	cellular nucleic acid binding protein	protein-coding	2.294	11.525	5.236	nan	1.727	1.183	2.840	4.056	1.919	2.711	1.403	1.370	2.552	2.854	3.245	3.786	2.488	nan	nan	1.465	1.401	2.443	1.745	2.203	3.259
9193	chr3	27765331	27766735	+	0	NA	Intergenic	Intergenic	-55594	NM_173182	72007	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	2.877	0.361	0.267	nan	2.761	1.944	1.810	1.574	nan	1.235	2.836	0.820	1.630	3.577	nan	1.588	1.394	2.427	1.007	1.633	0.968	1.028	1.780	1.427	2.861
10214	chr4	82089458	82095413	+	0	NA	intron (NR_040659, intron 2 of 2)	intron (NR_040659, intron 2 of 2)	27055	NR_040659	545641	Mm.216028	NR_040659	ENSMUSG00000085022	Gm5860	EG545641	predicted gene 5860	ncRNA	3.989	0.825	0.569	3.673	3.226	1.538	4.032	4.079	3.693	3.247	2.545	1.582	4.480	5.301	3.824	4.389	2.702	4.670	nan	2.424	1.478	6.132	0.927	0.664	3.626
15151	chr9	60369263	60371322	+	0	NA	intron (NM_001040426, intron 6 of 17)	L1M2|LINE|L1	140743	NM_001040426	207596	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	7.245	1.385	0.760	5.054	3.748	2.559	8.712	5.369	4.968	11.246	3.700	4.599	7.573	8.917	6.826	8.158	6.077	7.512	4.866	4.677	3.457	5.500	7.700	10.515	13.560
7807	chr19	45153771	45155326	+	0	NA	intron (NM_021901, intron 2 of 2)	intron (NM_021901, intron 2 of 2)	3833	NM_021901	21908	Mm.391203	NM_021901	ENSMUSG00000025215	Tlx1	Hox-11|Hox11|Tlx-1	T cell leukemia, homeobox 1	protein-coding	2.761	1.767	0.505	4.290	1.840	0.664	3.343	2.195	1.943	3.304	1.213	1.571	2.692	4.325	5.138	4.702	1.554	3.295	1.497	1.065	1.045	2.839	1.124	1.197	6.617
3504	chr12	81065744	81072565	+	0	NA	intron (NM_022316, intron 1 of 12)	intron (NM_022316, intron 1 of 12)	42346	NM_022316	64075	Mm.273295	NM_022316	ENSMUSG00000021136	Smoc1	2600002F22Rik|AI848508|SRG	SPARC related modular calcium binding 1	protein-coding	6.688	5.961	2.404	5.194	3.139	1.794	10.279	4.706	3.748	5.562	2.950	2.449	8.558	8.827	7.342	9.142	7.422	5.802	1.040	1.893	1.430	1.706	1.746	1.308	12.715
15585	chr9	119247568	119253005	+	0	NA	intron (NR_045693, intron 13 of 18)	RLTR31B2|LTR|ERVK	-18594	NR_033303	109280	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	7.469	7.777	2.253	7.640	2.534	1.565	5.195	7.417	4.703	7.037	4.785	2.045	6.690	7.795	7.274	9.703	4.311	7.345	2.752	1.359	1.398	3.470	nan	1.258	12.985
6356	chr17	15634030	15637365	+	0	NA	intron (NR_045431, intron 3 of 3)	MMETn-int|LTR|ERVK	3909	NR_045431	71008	Mm.399492	NR_045431		4933401D09Rik	-	RIKEN cDNA 4933401D09 gene	ncRNA	7.032	8.597	3.561	6.831	4.289	3.412	7.478	6.149	4.841	5.503	4.917	3.033	5.679	6.713	8.305	9.287	5.821	6.941	5.333	3.407	3.016	5.965	4.001	3.408	10.248
12860	chr6	146740907	146747503	+	0	NA	intron (NM_001346666, intron 1 of 11)	intron (NM_001346666, intron 1 of 11)	19275	NM_172734	232533	Mm.322121	NM_172734	ENSMUSG00000001630	Stk38l	4930473A22Rik|Ndr2|Ndr54	serine/threonine kinase 38 like	protein-coding	nan	1.828	0.717	nan	0.847	0.402	3.550	nan	1.934	nan	5.735	2.668	nan	2.016	2.573	nan	1.380	3.138	4.913	nan	0.913	nan	2.591	1.920	nan
8552	chr2	118335675	118338852	+	0	NA	intron (NM_201367, intron 1 of 2)	intron (NM_201367, intron 1 of 2)	32349	NR_045919	73358	Mm.437192	NR_045919	ENSMUSG00000085889	1700054M17Rik	-	RIKEN cDNA 1700054M17 gene	ncRNA	4.897	2.604	0.914	4.256	1.573	1.033	3.369	4.902	2.981	3.572	1.514	1.221	nan	4.115	4.164	6.339	4.552	5.524	2.779	1.942	1.447	2.492	1.991	1.657	7.484
14006	chr8	11462797	11465249	+	0	NA	intron (NM_011227, intron 1 of 1)	MLT1B|LTR|ERVL-MaLR	-13906	NR_126558	102132	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	5.736	5.061	2.241	5.384	4.935	3.823	2.863	6.233	3.664	4.018	5.512	2.046	3.857	5.351	5.085	5.551	2.754	5.190	1.033	1.587	1.915	1.438	0.511	0.372	4.164
3381	chr12	70546594	70570719	+	0	NA	intron (NR_037248, intron 2 of 4)	URR1A|DNA|hAT-Charlie	105502	NM_028339	72736	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	8.715	4.184	2.350	4.784	5.198	3.261	9.403	6.040	7.253	9.708	4.454	4.124	10.196	11.452	10.359	nan	9.763	8.602	1.600	2.621	2.033	2.857	1.638	1.167	13.077
852	chr1	169198942	169201592	+	0	NA	Intergenic	Intergenic	331197	NM_023284	66977	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	15.439	4.663	2.058	3.859	3.417	1.379	4.589	5.642	nan	4.437	6.714	3.282	7.898	6.785	nan	8.165	4.572	7.152	1.439	1.359	1.099	nan	nan	1.957	9.348
10634	chr4	132572738	132573860	+	0	NA	intron (NM_001081211, intron 1 of 1)	Charlie1a|DNA|hAT-Charlie	9232	NM_001081211	19204	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	3.127	2.260	1.023	2.859	3.216	1.951	2.684	2.587	1.318	2.220	2.471	1.213	1.568	2.918	nan	1.933	1.316	1.932	1.942	3.029	3.027	3.543	2.217	1.873	3.324
8230	chr2	48668526	48671590	+	0	NA	Intergenic	Intergenic	-144051	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	8.429	5.661	2.623	9.421	3.505	2.554	6.624	8.542	5.908	12.513	5.227	3.267	8.679	7.452	9.394	11.162	7.618	9.044	6.421	2.918	2.727	6.506	4.477	4.266	13.838
15446	chr9	102974331	102976016	+	0	NA	Intergenic	Intergenic	-33316	NM_033314	24059	Mm.207106	NM_033314	ENSMUSG00000032548	Slco2a1	2310021C19Rik|Pgt|Slc21a2|mPgt	solute carrier organic anion transporter family, member 2a1	protein-coding	2.132	1.393	0.492	5.662	1.458	0.701	2.947	1.404	2.211	2.316	2.365	0.765	1.740	3.449	3.777	3.377	1.177	3.228	0.553	0.446	0.416	0.904	0.397	0.228	5.549
10989	chr4	154607819	154612989	+	0	NA	intron (NM_001177995, intron 1 of 15)	RLTR17B_Mm|LTR|ERVK	25963	NR_045643	320939	Mm.436738	NR_045643		5930403L14Rik	-	RIKEN cDNA 5930403L14 gene	ncRNA	10.733	3.127	1.142	11.520	4.525	2.247	11.441	10.282	6.777	10.662	4.322	1.722	11.394	9.369	10.245	14.858	7.161	11.791	1.314	1.539	1.421	4.580	0.603	0.425	20.478
7317	chr18	64345402	64348234	+	0	NA	intron (NM_194268, intron 1 of 1)	intron (NM_194268, intron 1 of 1)	6454	NM_194268	225631	Mm.234723	NM_194268	ENSMUSG00000045991	Onecut2	C730009D12|OC-2|Oc2	one cut domain, family member 2	protein-coding	2.645	0.399	0.257	0.198	0.203	0.087	1.221	4.102	1.956	0.838	2.554	4.419	1.423	0.821	0.888	0.774	1.279	1.147	0.903	0.495	0.390	0.334	0.400	0.548	0.995
4341	chr13	101985266	101987669	+	0	NA	Intergenic	Intergenic	-218250	NM_001077495	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	0.959	0.748	0.229	1.065	0.535	0.155	2.920	3.090	2.682	2.774	3.207	2.586	5.468	5.791	4.448	1.718	1.144	1.597	5.374	1.446	0.543	6.850	2.378	0.828	0.825
5721	chr15	102131982	102135429	+	0	NA	intron (NM_001033277, intron 1 of 10)	intron (NM_001033277, intron 1 of 10)	2510	NM_001033277	223918	Mm.385009	NM_001033277	ENSMUSG00000036966	Spryd3	BC008150	SPRY domain containing 3	protein-coding	3.738	0.778	0.898	2.501	3.233	2.743	3.336	5.445	2.518	3.788	1.436	1.219	5.879	7.335	4.437	4.235	7.574	3.816	1.051	0.960	1.267	0.467	1.148	1.338	4.065
5732	chr15	102452446	102457338	+	0	NA	TTS (NM_144547)	TTS (NM_144547)	-4278	NM_001170911	66151	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	9.615	6.655	2.596	5.214	5.377	2.236	10.682	12.690	4.349	5.811	5.711	3.330	8.951	9.978	7.946	8.158	9.637	5.960	2.424	3.027	2.075	2.262	3.187	2.239	8.503
6288	chr17	3203716	3211171	+	0	NA	Intergenic	Intergenic	92471	NM_134123	106583	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	5.765	2.017	1.409	4.063	3.694	2.799	4.613	4.217	5.716	5.733	1.875	2.157	4.722	5.875	4.762	6.791	4.807	5.841	nan	0.751	0.734	0.983	0.837	0.624	5.518
15621	chr9	122039428	122040624	+	0	NA	Intergenic	Intergenic	-44000	NM_153540	215494	Mm.402151	NM_153540	ENSMUSG00000066235	Pomgnt2	Ago61|C85492|Gtdc2	protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2	protein-coding	3.569	3.464	2.179	3.853	1.318	0.434	1.176	2.912	2.301	2.152	1.796	0.699	1.381	2.382	3.183	3.750	1.585	3.393	2.968	1.371	0.472	4.071	nan	1.380	5.066
11344	chr5	73295590	73297361	+	0	NA	intron (NM_023429, intron 3 of 8)	intron (NM_023429, intron 3 of 8)	3681	NM_001159888	68095	Mm.247039	NM_023429	ENSMUSG00000029152	Ociad1	6030432N09Rik|AI481327|AW557942|Asrij|B230209J16Rik|BB021357|Emi2|Imi2|OCIA|TPA018	OCIA domain containing 1	protein-coding	4.628	0.798	0.558	4.832	5.682	4.371	2.468	4.352	3.306	2.964	2.215	1.418	3.021	5.859	4.536	5.061	4.141	5.941	1.262	1.018	1.066	0.997	1.131	1.231	3.691
1475	chr10	79388398	79392465	+	0	NA	intron (NM_001101572, intron 5 of 5)	Lx4B|LINE|L1	33840	NM_001101572	624845	Mm.469866	NM_001101572	ENSMUSG00000091468	Vmn2r82	EG624845	vomeronasal 2, receptor 82	protein-coding	9.703	10.925	3.547	6.929	3.873	2.551	4.862	6.167	3.317	7.419	3.648	2.008	4.668	7.722	nan	7.041	6.249	6.085	nan	1.642	2.019	3.202	2.759	2.863	12.841
14023	chr8	12631863	12642598	+	0	NA	intron (NM_198031, intron 15 of 21)	intron (NM_198031, intron 15 of 21)	34870	NM_198031	259279	Mm.142095	NM_198031	ENSMUSG00000000759	Tubgcp3	GCP3|Spc98p	tubulin, gamma complex associated protein 3	protein-coding	1.081	3.890	2.228	0.843	0.732	0.632	1.110	0.847	1.334	1.644	0.389	0.356	1.158	1.418	1.355	1.697	1.186	1.697	7.353	3.755	2.346	6.512	3.882	2.726	1.548
10406	chr4	116329796	116333948	+	0	NA	intron (NM_008641, intron 6 of 28)	intron (NM_008641, intron 6 of 28)	109958	NM_181585	18710	Mm.253819	NM_181585	ENSMUSG00000028698	Pik3r3	AA414954|p55pik	phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)	protein-coding	5.878	0.731	0.787	2.931	4.365	3.593	5.827	5.665	4.584	4.598	2.265	2.608	5.333	6.051	4.997	nan	4.673	4.226	1.198	1.440	1.785	0.995	1.385	1.841	3.919
13192	chr7	52909859	52911972	+	0	NA	Intergenic	L1_Mus3|LINE|L1	-895199	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	2.923	0.848	0.583	0.557	2.075	0.959	2.647	10.193	2.503	2.565	2.691	3.497	2.891	7.444	3.380	5.637	6.191	3.780	5.998	5.576	2.663	6.087	6.883	3.737	0.802
7690	chr19	29908884	29911323	+	0	NA	Intergenic	Intergenic	-15011	NM_133775	77125	Mm.182359	NM_133775	ENSMUSG00000024810	Il33	9230117N10Rik|Il-33|Il1f11|NF-HEV	interleukin 33	protein-coding	2.589	0.504	0.510	nan	0.776	0.534	3.442	1.691	1.519	1.152	6.921	4.673	2.031	1.122	1.659	1.855	4.783	1.991	nan	0.464	0.547	0.813	nan	0.543	1.081
2968	chr11	113607230	113614878	+	0	NA	Intergenic	Intergenic	-8427	NM_009217	20606		NM_009217	ENSMUSG00000047904	Sstr2	SRIF-1|SS2R|SSTR-2|Smstr-2|Smstr2|sst2	somatostatin receptor 2	protein-coding	9.806	nan	1.855	11.349	5.954	3.638	nan	nan	5.610	nan	5.366	2.543	7.545	10.497	8.749	10.956	5.968	nan	2.902	nan	2.527	4.096	1.820	2.171	13.095
12268	chr6	56867042	56871103	+	0	NA	intron (NM_012056, intron 7 of 9)	intron (NM_012056, intron 7 of 9)	32814	NM_001252374	107569	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	4.404	1.716	0.994	1.936	1.812	0.809	7.394	7.722	3.017	2.458	2.762	4.056	6.799	7.128	6.340	7.500	5.288	4.148	nan	1.244	0.614	0.917	0.473	0.443	4.169
10088	chr4	53328157	53330793	+	0	NA	Intergenic	MERVL-int|LTR|ERVL	-59243	NR_033139	381524	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	6.928	4.587	2.020	4.074	2.922	1.501	3.053	5.251	2.951	4.223	1.021	0.974	4.199	5.324	4.356	7.907	3.108	3.627	nan	1.803	1.078	3.306	1.870	1.111	5.992
11581	chr5	113725143	113729845	+	0	NA	Intergenic	Intergenic	-2722	NR_033216	381707	Mm.159016	NR_033216	ENSMUSG00000042184	1700069L16Rik	1700096P12Rik	RIKEN cDNA 1700069L16 gene	ncRNA	2.004	0.378	0.261	2.018	0.949	0.735	4.557	3.633	2.057	2.859	0.269	1.273	3.690	4.028	5.797	6.140	2.785	4.228	nan	nan	1.653	4.994	3.313	3.578	4.348
9681	chr3	107415758	107421755	+	0	NA	Intergenic	Intergenic	40142	NM_145922	99738	Mm.101976	NM_145922	ENSMUSG00000027895	Kcnc4	AI850292|KSHIIIC|Kcr2-4|Kv3.4	potassium voltage gated channel, Shaw-related subfamily, member 4	protein-coding	0.910	1.165	0.480	0.543	0.223	0.090	2.509	2.312	0.427	0.415	0.308	0.142	1.442	0.955	nan	1.586	0.804	1.203	3.891	1.178	1.052	5.808	2.703	1.844	1.484
15387	chr9	92759974	92761376	+	0	NA	intron (NR_040770, intron 1 of 4)	L1Md_F3|LINE|L1	41959	NR_040770	331003	Mm.50805	NR_040770	ENSMUSG00000101734	4933400C23Rik	4933400C23	RIKEN cDNA 4933400C23 gene	ncRNA	1.647	0.337	0.298	0.729	0.131	0.074	1.450	0.753	0.363	0.318	0.359	0.092	2.863	3.200	0.769	1.050	0.945	0.762	0.252	0.157	0.265	0.399	0.050	0.130	0.641
5448	chr15	80507127	80509573	+	0	NA	intron (NM_001163189, intron 4 of 5)	intron (NM_001163189, intron 4 of 5)	52120	NM_001163189	383075	Mm.297626	NM_001163189	ENSMUSG00000050439	Enthd1	Gm1242|Gm86	ENTH domain containing 1	protein-coding	nan	3.527	1.310	nan	0.300	0.255	nan	1.132	0.407	nan	5.833	1.933	0.229	nan	0.358	0.608	nan	0.704	1.340	0.286	0.251	nan	0.603	0.692	0.431
2456	chr11	74855620	74858580	+	0	NA	intron (NM_197943, intron 16 of 22)	intron (NM_197943, intron 16 of 22)	11094	NR_105891	102465558		NR_105891	ENSMUSG00000098317	Mir6926	Gm27949|mmu-mir-6926	microRNA 6926	ncRNA	2.558	0.833	0.669	2.613	2.134	1.001	2.882	2.825	2.858	3.522	1.854	1.724	2.217	4.576	nan	2.929	2.394	nan	2.689	3.638	nan	2.765	3.044	1.264	2.301
7291	chr18	60962020	60968552	+	0	NA	intron (NM_177407, intron 13 of 17)	intron (NM_177407, intron 13 of 17)	1732	NM_001286809	12322	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	12.555	16.124	7.895	7.597	5.118	2.964	10.001	11.300	6.870	8.367	2.245	1.072	nan	10.459	9.956	12.232	10.335	nan	nan	1.431	1.703	nan	0.602	0.842	13.765
1192	chr10	24937485	24940219	+	0	NA	Intergenic	Intergenic	-11382	NM_007482	11846	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	3.132	1.104	0.407	2.348	0.869	0.520	1.713	1.707	2.623	2.173	0.364	0.532	4.500	2.619	2.936	3.785	4.211	2.163	0.637	0.448	0.377	0.700	0.324	0.217	5.864
10130	chr4	59385442	59388231	+	0	NA	intron (NM_001163288, intron 6 of 16)	intron (NM_001163288, intron 6 of 16)	51797	NM_001163288	634731	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528|OTTMUSG00000007332	sushi domain containing 1	protein-coding	7.293	nan	0.573	2.568	3.719	1.752	4.774	6.684	3.939	3.739	2.676	2.842	3.659	5.111	4.935	6.797	4.218	6.632	nan	1.188	0.861	2.055	0.929	0.716	6.138
3017	chr11	116942089	116945860	+	0	NA	intron (NM_172948, intron 3 of 16)	(CA)n|Simple_repeat|Simple_repeat	25111	NM_172948	268510	Mm.35141	NM_172948	ENSMUSG00000043857	Mgat5b	C330018B01|GnT-IX|mGnTVB	mannoside acetylglucosaminyltransferase 5, isoenzyme B	protein-coding	5.366	2.492	0.977	6.413	3.574	2.078	3.493	4.355	3.871	4.038	2.790	2.077	3.865	4.374	4.846	6.542	3.067	6.217	1.822	nan	0.660	2.587	1.608	1.090	5.506
9035	chr2	167711561	167714106	+	0	NA	Intergenic	B2_Mm1t|SINE|B2	21656	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	8.012	2.311	0.911	5.712	3.265	1.484	6.438	7.853	3.858	5.721	3.885	2.192	5.653	7.525	6.519	8.653	7.499	6.038	nan	1.522	1.558	2.473	2.223	1.588	10.729
1095	chr10	9592640	9594514	+	0	NA	Intergenic	Intergenic	81631	NM_177271	320825	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding	0.503	0.410	0.341	0.491	0.297	0.320	0.282	0.715	0.705	0.489	0.527	0.559	0.194	0.296	0.125	0.460	0.815	0.617	3.064	1.734	0.668	1.849	3.882	2.829	0.488
2975	chr11	115157114	115159404	+	0	NA	intron (NM_021411, intron 3 of 8)	intron (NM_021411, intron 3 of 8)	4081	NM_021411	58222	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	1.205	nan	0.630	1.108	0.666	0.759	nan	nan	0.741	nan	0.464	0.585	0.892	1.852	2.106	1.507	0.980	nan	5.513	nan	2.239	5.281	6.224	4.103	1.617
14156	chr8	37156435	37160569	+	0	NA	Intergenic	Intergenic	-134264	NR_126063	414128	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	6.163	5.108	1.745	3.637	2.683	1.825	6.698	8.135	4.646	7.781	5.807	3.477	8.699	8.254	7.439	8.204	5.246	6.415	2.407	1.652	1.883	3.760	1.973	1.897	8.965
6734	chr17	53617409	53620154	+	0	NA	intron (NM_020005, intron 2 of 17)	intron (NM_020005, intron 2 of 17)	34655	NM_001190846	18519	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	9.397	12.471	3.862	11.570	7.688	5.231	8.483	6.779	6.772	12.458	7.290	4.344	6.837	9.450	8.732	12.012	6.880	9.041	4.753	2.740	3.170	5.288	3.152	4.104	15.186
14324	chr8	73918247	73921467	+	0	NA	Intergenic	Intergenic	-566317	NM_010687	16795	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	5.928	nan	1.751	6.589	2.306	1.078	nan	4.162	3.128	4.068	1.981	1.569	3.039	3.405	4.643	6.140	3.616	5.216	1.934	2.114	1.776	nan	1.889	1.045	6.881
10038	chr4	45431031	45437815	+	0	NA	intron (NM_001033306, intron 5 of 5)	intron (NM_001033306, intron 5 of 5)	-25657	NM_001009949	230125	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	2.142	nan	0.357	1.900	1.593	0.933	1.924	2.979	1.725	2.196	2.288	1.726	1.819	2.301	2.432	2.721	1.576	nan	4.543	1.543	1.472	nan	0.835	0.645	2.927
12453	chr6	91024677	91028028	+	0	NA	intron (NM_018815, intron 32 of 39)	intron (NM_018815, intron 32 of 39)	90474	NM_018815	54563	Mm.28162	NM_018815	ENSMUSG00000030091	Nup210	9830001L10|AI836801|Pom210|gp190|gp210	nucleoporin 210	protein-coding	1.118	0.666	0.349	1.738	1.939	0.922	2.949	1.752	1.721	1.741	0.484	0.534	3.069	4.448	3.377	3.340	0.801	2.361	nan	0.991	0.703	3.730	1.919	1.103	2.550
1883	chr11	3187440	3193379	+	0	NA	intron (NM_030207, intron 1 of 32)	MTC|LTR|ERVL-MaLR	3054	NM_030207	78887	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	4.541	11.346	3.363	7.804	1.899	0.995	4.182	5.219	2.688	5.575	3.544	2.534	3.659	4.677	6.189	6.928	3.946	5.747	6.405	nan	3.075	7.754	3.313	3.869	9.340
14802	chr8	129046901	129051627	+	0	NA	intron (NM_001197041, intron 4 of 5)	intron (NM_001197041, intron 4 of 5)	16228	NM_029061	74703	Mm.196017	NM_029061	ENSMUSG00000025808	Ccdc7a	4930517G15Rik|4930540C21Rik|Biot2|Ccdc7	coiled-coil domain containing 7A	protein-coding	8.198	2.170	1.795	7.362	5.778	3.933	7.984	7.948	4.855	5.012	4.724	3.180	8.577	8.475	nan	9.550	7.290	5.892	nan	1.808	2.336	nan	1.700	nan	6.929
11287	chr5	65940804	65942851	+	0	NA	Intergenic	Intergenic	-25297	NM_001081104	231252	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	3.643	0.951	1.112	2.896	2.872	2.162	3.143	3.831	3.084	4.369	2.481	1.826	3.400	5.149	3.548	2.827	3.154	3.724	1.782	2.293	1.271	nan	2.172	1.573	1.946
4691	chr14	56175251	56180924	+	0	NA	Intergenic	Intergenic	-3488	NM_153052	245839	Mm.207063	NM_153052	ENSMUSG00000015443	Gzmn	GrN	granzyme N	protein-coding	7.859	11.082	6.042	8.805	7.003	5.247	8.180	11.812	6.361	7.314	6.598	3.847	8.269	11.014	8.966	8.516	7.069	7.770	4.993	3.580	3.742	4.494	4.395	4.336	9.137
11779	chr5	135151182	135154590	+	0	NA	intron (NM_013763, intron 1 of 6)	intron (NM_013763, intron 1 of 6)	3175	NM_013763	27368	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	5.563	5.454	1.557	6.567	2.844	1.301	2.765	7.178	3.350	4.595	1.730	1.212	2.826	6.385	5.169	3.880	2.026	3.997	1.401	1.698	1.330	1.930	nan	1.371	5.159
6618	chr17	41014241	41018878	+	0	NA	Intergenic	L1Md_F|LINE|L1	81874	NM_008650	17850	Mm.259884	NM_008650	ENSMUSG00000023921	Mut	D230010K02Rik|Mcm	methylmalonyl-Coenzyme A mutase	protein-coding	nan	2.171	0.869	3.069	2.338	0.928	8.453	6.659	4.726	2.598	6.700	6.910	6.198	8.206	6.021	4.332	3.293	3.104	1.560	1.015	0.914	1.018	1.044	0.638	5.311
1846	chr10	127052559	127059968	+	0	NA	3' UTR (NM_001033262, exon 4 of 4)	3' UTR (NM_001033262, exon 4 of 4)	3921	NM_001033262	216438	Mm.37892	NM_001033262	ENSMUSG00000040502	March9	AI608492|BC019560	membrane-associated ring finger (C3HC4) 9	protein-coding	8.728	nan	0.809	6.012	2.854	1.453	5.600	6.164	3.712	4.686	8.443	4.060	4.591	6.587	5.649	5.570	4.023	4.523	2.449	1.529	0.898	1.537	nan	1.223	8.604
15678	chrX	12249991	12251394	+	0	NA	Intergenic	LTR67B|LTR|ERVL	-90337	NM_001168321	71458	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	4.699	6.163	1.476	5.339	1.880	0.934	2.633	5.406	3.328	4.985	3.820	2.365	4.064	5.626	3.946	6.508	3.240	4.503	3.817	1.964	1.119	4.638	2.300	1.431	6.525
9064	chr2	170112642	170116016	+	0	NA	exon (NM_001159683, exon 5 of 7)	exon (NM_001159683, exon 5 of 7)	16891	NM_001033299	228913	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	2.581	1.757	1.062	3.014	1.288	0.425	2.663	2.024	1.707	1.761	1.350	1.201	2.694	nan	2.856	4.080	2.910	nan	4.434	3.431	2.381	6.790	2.965	2.458	3.328
4832	chr14	73561718	73563332	+	0	NA	intron (NM_011506, intron 2 of 10)	intron (NM_011506, intron 2 of 10)	9739	NM_011506	20916	Mm.38951	NM_011506	ENSMUSG00000022110	Sucla2	4930547K18Rik|A-SCS	succinate-Coenzyme A ligase, ADP-forming, beta subunit	protein-coding	3.682	1.147	0.832	2.279	1.356	0.313	1.109	4.072	2.029	2.631	1.339	0.782	2.660	4.523	3.009	3.744	1.835	2.452	0.452	0.194	0.228	0.839	0.529	0.177	4.524
133	chr1	39988554	39989774	+	0	NA	intron (NM_001252200, intron 11 of 31)	intron (NM_001252200, intron 11 of 31)	88251	NM_008696	26921	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	4.273	2.103	0.630	3.223	3.284	1.135	2.334	3.327	2.450	2.700	2.557	1.293	2.551	4.245	3.529	4.664	1.933	3.554	1.210	1.179	0.989	2.167	0.744	0.366	3.571
11047	chr5	20701326	20705363	+	0	NA	3' UTR (NM_001170745, exon 21 of 21)	3' UTR (NM_001170745, exon 21 of 21)	178780	NM_172992	68770	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	1.746	0.775	1.022	1.166	3.397	3.534	1.130	0.857	1.627	1.122	0.877	0.560	0.713	1.368	0.832	0.903	1.766	1.994	0.524	1.016	1.003	0.292	1.112	1.845	0.724
13939	chr7	151305059	151306774	+	0	NA	Intergenic	Intergenic	5991081	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	nan	nan	0.276	nan	0.500	0.196	5.958	6.862	nan	0.490	0.427	0.182	5.137	4.351	3.012	3.247	2.318	2.656	1.476	0.697	0.330	2.736	nan	0.386	2.045
2515	chr11	78348222	78350337	+	0	NA	TTS (NM_011676)	TTS (NM_011676)	2569	NM_001313987	22248	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	12.563	7.849	2.504	10.000	6.485	2.593	9.753	9.758	7.642	10.940	7.097	3.289	9.505	14.150	10.325	13.102	8.316	9.638	3.701	3.293	nan	4.332	3.571	2.060	13.828
15140	chr9	59464248	59466967	+	0	NA	intron (NM_019927, intron 1 of 13)	intron (NM_019927, intron 1 of 13)	16134	NR_045640	100504377	Mm.446631	NR_045640		Gm20199	-	predicted gene, 20199	ncRNA	7.610	5.023	2.963	6.725	4.198	3.644	5.378	6.102	4.762	7.062	4.277	3.238	5.695	7.049	6.497	7.346	5.051	7.228	4.291	3.302	3.345	4.411	4.438	4.549	10.019
14178	chr8	42098490	42105708	+	0	NA	Intergenic	Lx7|LINE|L1	274832	NR_045497	69966	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA	6.772	2.407	1.063	8.899	4.491	2.089	4.125	4.640	6.714	6.305	3.663	3.474	11.938	11.039	8.099	8.485	6.784	8.115	1.025	1.437	0.913	1.861	0.707	0.634	7.003
12107	chr6	30409816	30411184	+	0	NA	intron (NM_001311087, intron 1 of 8)	intron (NM_001311087, intron 1 of 8)	8645	NM_001311087	76788	Mm.277308	NM_029742	ENSMUSG00000029775	Klhdc10	2410127E18Rik|AI593221|mKIAA0265	kelch domain containing 10	protein-coding	2.300	1.611	0.287	2.058	0.881	0.066	5.383	3.506	0.941	1.253	0.976	1.378	2.750	3.042	6.970	6.232	5.356	1.975	2.868	0.835	0.567	6.008	1.153	0.981	5.926
5017	chr15	6656426	6660887	+	0	NA	intron (NM_011815, intron 16 of 17)	intron (NM_011815, intron 16 of 17)	-49725	NM_030168	78757	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	7.357	5.425	1.693	7.782	5.440	3.255	13.141	14.512	4.942	14.156	3.036	3.151	11.646	10.446	11.358	8.500	7.000	10.726	2.391	0.958	1.332	2.523	1.670	2.474	11.456
15055	chr9	48550764	48555883	+	0	NA	Intergenic	Intergenic	51800	NM_001311062	18113	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	5.563	2.253	1.251	8.788	3.345	1.490	0.988	5.804	4.321	5.229	2.577	1.048	2.897	6.133	nan	nan	1.559	6.599	1.276	1.273	1.406	nan	1.923	1.119	nan
13762	chr7	134229146	134237973	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-8462	NM_007400	11489	Mm.439714	NM_007400	ENSMUSG00000054555	Adam12	Mltna	a disintegrin and metallopeptidase domain 12 (meltrin alpha)	protein-coding	2.913	nan	2.771	2.961	1.830	0.959	3.021	6.141	nan	2.891	2.865	1.878	4.329	4.982	3.306	3.418	3.253	3.043	4.323	4.040	2.683	3.084	5.077	3.774	2.257
11434	chr5	92388906	92392850	+	0	NA	intron (NM_001310665, intron 1 of 6)	intron (NM_001310665, intron 1 of 6)	2744	NM_001310665	109979	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	10.247	8.230	2.740	8.573	5.589	3.663	7.345	8.921	7.337	9.575	10.161	3.732	9.099	11.989	9.632	10.107	7.414	9.373	4.626	2.853	2.350	4.183	3.070	2.924	10.083
2605	chr11	87799017	87801511	+	0	NA	intron (NM_010824, intron 9 of 13)	intron (NM_010824, intron 9 of 13)	6480	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	5.564	8.676	3.817	7.342	4.054	1.809	6.835	6.571	3.308	9.426	3.307	2.160	4.581	7.987	6.378	7.855	4.790	4.975	7.150	4.702	4.485	7.876	6.683	6.343	9.344
10776	chr4	138468313	138470228	+	0	NA	Intergenic	Intergenic	14122	NM_025451	66259	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding	nan	3.687	1.085	5.818	4.360	2.727	4.007	3.099	nan	6.551	2.008	2.618	2.014	5.112	2.787	4.581	1.910	3.535	3.955	2.481	3.158	4.325	nan	5.776	7.480
56	chr1	23203602	23204751	+	0	NA	Intergenic	Intergenic	-68093	NR_029533	387225		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	5.726	nan	0.248	3.579	1.627	0.764	4.286	4.428	2.489	2.496	5.363	1.111	4.096	3.701	2.591	4.640	2.604	3.837	1.036	1.127	0.734	1.260	1.011	0.424	1.630
13098	chr7	31197210	31199717	+	0	NA	Intergenic	RLTR13D3|LTR|ERVK	36105	NR_046062	100038516	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322|ENSMUSG00000074193	predicted gene 10640	ncRNA	6.201	4.526	1.483	3.163	2.710	1.126	1.533	1.496	1.844	3.113	3.901	0.861	1.539	3.064	2.027	2.554	2.274	2.857	0.939	2.900	1.590	0.580	0.962	0.605	4.397
10171	chr4	62970731	62972585	+	0	NA	intron (NM_028326, intron 1 of 14)	intron (NM_028326, intron 1 of 14)	6084	NM_028326	72701	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	2.358	nan	0.225	3.286	2.934	1.064	1.706	1.561	1.984	2.341	1.053	0.595	1.988	5.187	4.514	3.014	0.992	3.249	nan	0.676	0.522	2.232	0.669	0.464	3.552
3977	chr13	37532811	37534338	+	0	NA	Intergenic	Intergenic	188229	NM_010745	17084	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	4.374	nan	0.633	4.911	2.968	1.461	1.399	2.056	2.742	3.134	2.373	1.243	1.490	3.350	2.146	nan	1.246	nan	0.825	1.025	0.968	0.807	0.798	0.531	2.803
7567	chr19	10349936	10357112	+	0	NA	Intergenic	Intergenic	-35566	NM_018801	54525	Mm.182654	NM_018801	ENSMUSG00000024743	Syt7	AI851541|B230112P13Rik	synaptotagmin VII	protein-coding	3.686	4.018	1.189	3.466	2.134	0.949	3.942	6.867	nan	4.049	2.660	2.542	3.486	4.942	4.899	6.518	4.086	5.245	2.704	2.336	1.710	5.721	3.257	2.090	6.915
6623	chr17	43205173	43219991	+	0	NA	Intergenic	RMER17B|LTR|ERVK	-54291	NR_045153	545207	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	4.875	0.944	0.597	2.147	3.267	1.921	7.572	5.209	3.764	4.104	1.276	2.457	5.629	nan	5.222	4.319	nan	5.030	1.469	1.201	0.840	0.841	1.587	1.261	4.181
4282	chr13	93123788	93125499	+	0	NA	intron (NM_023821, intron 1 of 12)	intron (NM_023821, intron 1 of 12)	20081	NM_023821	76469	Mm.33857	NM_023821	ENSMUSG00000047419	Cmya5	2310076E16Rik|2310076E21Rik|AA420382|AI504003|Srfsd|Tims|sr553	cardiomyopathy associated 5	protein-coding	5.055	11.234	4.011	5.103	1.545	0.629	3.661	3.722	3.291	5.165	3.628	2.091	4.694	5.697	6.382	6.861	2.908	nan	3.412	1.430	0.728	4.424	1.359	1.399	8.531
9371	chr3	67386432	67387591	+	0	NA	intron (NM_010801, intron 2 of 6)	ORR1B1-int|LTR|ERVL-MaLR	12914	NM_001039543	17349	Mm.10414	NM_010801	ENSMUSG00000048416	Mlf1	HLS7	myeloid leukemia factor 1	protein-coding	5.146	7.450	1.921	6.280	2.525	1.061	4.543	3.826	4.192	6.531	3.933	2.250	4.528	5.520	6.472	7.420	3.792	7.698	2.806	1.355	1.268	3.212	1.571	2.234	9.569
8770	chr2	147701404	147704620	+	0	NA	Intergenic	Intergenic	-7681	NR_046014	381384	Mm.259809	NR_046014	ENSMUSG00000051986	A530006G24Rik	Gm1003	RIKEN cDNA A530006G24 gene	ncRNA	1.316	0.701	0.287	1.081	0.718	0.443	1.797	2.097	2.415	3.230	1.904	0.697	1.749	1.177	1.720	1.521	1.319	2.397	8.432	4.793	2.805	5.357	7.346	6.615	1.921
6819	chr17	71192034	71204087	+	0	NA	intron (NM_022882, intron 1 of 19)	intron (NM_022882, intron 1 of 19)	-6594	NM_001164885	64898	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	11.400	10.875	3.817	10.003	6.211	3.095	13.414	11.086	8.326	10.426	7.858	6.485	11.319	13.982	13.673	15.028	10.773	10.369	4.696	2.871	2.275	5.475	4.025	3.258	16.679
11294	chr5	66393519	66398255	+	0	NA	intron (NM_001201413, intron 6 of 16)	MTB_Mm|LTR|ERVL-MaLR	-58222	NM_001201416	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	4.022	1.147	0.792	2.106	5.492	3.689	5.946	6.149	3.570	4.442	3.879	3.388	3.359	5.295	3.839	3.722	5.486	3.269	0.771	1.070	1.778	nan	0.862	0.934	3.575
5966	chr16	29786088	29790340	+	0	NA	Intergenic	Intergenic	190910	NR_037689	328657	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	4.433	0.649	0.276	0.914	0.741	0.260	6.214	7.514	2.712	1.463	3.937	2.458	6.250	2.739	5.931	7.454	4.370	4.460	0.638	0.633	0.069	0.834	nan	0.407	4.743
5552	chr15	86315328	86319463	+	0	NA	intron (NM_145476, intron 8 of 12)	IAPLTR1_Mm|LTR|ERVK	102936	NM_145476	223754	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	nan	12.407	4.465	nan	0.093	0.060	nan	nan	nan	0.434	0.123	0.243	0.804	0.522	nan	nan	nan	nan	nan	0.319	0.178	nan	0.209	0.140	nan
4038	chr13	43326800	43328389	+	0	NA	Intergenic	Intergenic	-23422	NM_001033399	328232	Mm.441399	NM_001033399	ENSMUSG00000051335	Gfod1	9630032O13|AI850995	glucose-fructose oxidoreductase domain containing 1	protein-coding	5.738	1.716	0.756	5.971	2.077	1.030	3.694	3.876	3.163	3.195	3.394	2.296	2.738	4.339	4.493	4.987	2.195	6.680	4.292	nan	0.965	4.976	2.268	1.126	5.251
9483	chr3	89807131	89809583	+	0	NA	Intergenic	Intergenic	-23013	NM_172530	214547	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	5.673	0.746	0.493	2.853	2.559	0.788	10.101	5.670	5.533	4.557	3.090	2.495	8.715	6.081	6.135	5.891	7.742	7.143	nan	0.846	0.160	0.609	0.434	0.299	2.301
12917	chr7	6120296	6128118	+	0	NA	Intergenic	Lx8|LINE|L1	31764	NM_001013012	67109	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	7.479	2.869	1.948	4.514	3.846	2.786	9.709	9.356	3.931	5.360	2.298	2.435	7.924	9.009	6.882	7.151	9.661	6.262	2.556	2.912	3.232	2.465	4.599	4.009	7.314
2225	chr11	55017855	55026388	+	0	NA	intron (NR_138556, intron 1 of 24)	intron (NR_138556, intron 1 of 24)	11350	NR_138556	11749	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	4.556	2.730	1.043	2.648	1.734	0.948	1.526	2.844	1.575	2.674	1.122	1.018	1.894	nan	2.219	2.724	2.746	2.491	7.121	5.058	3.287	5.813	7.899	6.312	nan
6087	chr16	45310211	45312248	+	0	NA	Intergenic	Intergenic	86892	NM_177584	208154	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	2.984	0.987	0.326	1.825	2.398	0.689	1.678	2.022	2.332	4.418	0.749	0.227	4.477	5.884	4.432	4.268	3.247	3.304	0.758	0.841	0.415	0.428	0.520	0.260	2.646
30	chr1	16093829	16097485	+	0	NA	Intergenic	Intergenic	-2332	NM_001243238	75799	Mm.78557	NM_001243238	ENSMUSG00000067795	4930444P10Rik	-	RIKEN cDNA 4930444P10 gene	protein-coding	9.687	10.436	2.726	11.722	4.119	2.825	6.610	6.786	7.102	12.723	8.507	5.876	10.409	8.566	9.640	15.055	7.710	10.274	4.936	1.490	2.429	6.076	2.577	3.992	15.700
13896	chr7	148639790	148656199	+	0	NA	Intergenic	Intergenic	3333159	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	7.767	nan	1.137	10.345	3.761	1.992	5.652	12.220	nan	7.426	4.012	2.115	7.331	9.745	9.026	9.993	5.161	8.090	3.083	1.833	1.798	5.498	nan	1.595	13.324
7988	chr2	18102008	18104636	+	0	NA	intron (NR_045539, intron 6 of 24)	intron (NR_045539, intron 6 of 24)	38737	NM_001252561	17354	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	2.086	0.903	0.447	0.969	0.977	0.353	2.474	2.877	2.184	1.465	1.893	3.635	4.367	1.660	2.099	3.405	3.133	2.499	0.970	0.768	0.340	0.636	0.657	0.444	1.439
11713	chr5	124621589	124627689	+	0	NA	intron (NM_026486, intron 16 of 18)	intron (NM_026486, intron 16 of 18)	-4413	NM_011596	21871	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	2.021	0.897	0.536	2.689	1.488	0.912	2.222	1.209	1.870	2.473	0.943	0.768	2.501	2.920	nan	3.180	nan	nan	nan	2.292	2.129	5.547	nan	2.488	nan
15341	chr9	78373606	78382177	+	0	NA	intron (NM_026480, intron 2 of 2)	intron (NM_026480, intron 2 of 2)	697	NM_026480	67968	Mm.26883	NM_026480	ENSMUSG00000032346	Ooep	2410146L05Rik|Floped|Moep19|Sddr	oocyte expressed protein	protein-coding	7.222	2.031	1.765	4.355	5.841	3.694	5.964	7.307	5.248	5.799	3.746	2.831	6.699	9.436	7.559	7.955	6.467	5.904	1.363	nan	1.473	1.070	1.656	1.505	7.291
12398	chr6	86990468	86995802	+	0	NA	3' UTR (NM_177762, exon 20 of 20)	3' UTR (NM_177762, exon 20 of 20)	-16701	NM_001170591	56748	Mm.23809	NM_020045	ENSMUSG00000029993	Nfu1	0610006G17Rik|CGI-33|Hirip5	NFU1 iron-sulfur cluster scaffold	protein-coding	7.828	7.088	3.736	5.700	4.783	3.778	9.234	10.937	3.680	5.908	5.144	4.053	7.240	8.097	6.977	8.861	8.023	5.419	nan	3.340	3.132	2.598	4.095	3.735	7.702
13459	chr7	105251402	105254308	+	0	NA	Intergenic	Intergenic	-35240	NM_001011533	259161	Mm.377867	NM_001011533	ENSMUSG00000073909	Olfr688	MOR40-16|MOR40-5|Olfr688-ps1	olfactory receptor 688	protein-coding	2.764	1.902	0.803	6.594	2.506	1.054	7.008	5.152	1.597	1.743	1.247	0.475	1.355	4.452	3.079	nan	1.066	nan	nan	1.385	0.751	1.589	1.250	0.783	3.785
11350	chr5	73881120	73884059	+	0	NA	Intergenic	Intergenic	185822	NM_177561	69727	Mm.48795	NM_177561	ENSMUSG00000054814	Usp46	1190009E20Rik|2410018I08Rik|AI451644	ubiquitin specific peptidase 46	protein-coding	4.195	3.960	1.276	4.282	2.825	1.334	5.530	3.430	2.273	4.060	2.459	1.793	2.966	4.728	4.325	6.013	4.042	3.479	2.506	1.444	1.571	2.618	2.277	2.542	6.266
3038	chr11	117639836	117645112	+	0	NA	Intergenic	Intergenic	-11815	NM_198022	217351	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	7.014	18.347	5.546	10.435	3.514	2.140	6.572	7.434	3.842	8.370	6.861	3.204	5.773	8.019	8.540	10.093	5.007	8.158	4.222	nan	2.506	5.826	2.286	2.387	9.813
2151	chr11	50049199	50050945	+	0	NA	intron (NM_001290750, intron 1 of 7)	intron (NM_001290750, intron 1 of 7)	-19630	NR_029769	723845		NR_029769	ENSMUSG00000065417	Mir340	Mirn340|mir-340|mmu-mir-340	microRNA 340	ncRNA	3.029	6.408	1.946	4.763	1.625	0.648	2.522	4.004	2.643	4.426	1.915	1.410	2.491	4.089	4.566	5.751	1.590	4.256	nan	1.208	1.679	5.737	nan	2.065	6.664
618	chr1	134208290	134211032	+	0	NA	intron (NM_001291930, intron 1 of 1)	L2a|LINE|L2	16213	NM_016749	53311	Mm.379067	NM_016749	ENSMUSG00000042451	Mybph	AI385643|MyBP-H	myosin binding protein H	protein-coding	4.666	4.514	1.781	nan	2.148	1.734	2.352	2.718	2.165	2.645	3.473	0.680	2.576	4.564	3.108	3.676	2.309	2.850	1.133	1.611	0.549	0.895	1.072	0.557	2.432
13807	chr7	137425750	137427731	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-10908	NM_023140	30926	Mm.267692	NM_023140	ENSMUSG00000031068	Glrx3	PICOT|Txnl2	glutaredoxin 3	protein-coding	0.617	nan	0.413	0.436	0.436	0.249	0.732	0.738	nan	0.438	0.759	0.659	0.419	0.620	1.455	0.778	1.027	0.777	4.811	4.356	2.936	6.399	3.975	2.592	0.837
848	chr1	167929541	167933935	+	0	NA	Intergenic	Lx8|LINE|L1	242180	NM_033652	110648	Mm.330081	NM_033652	ENSMUSG00000026686	Lmx1a	Lmx1.1|dr|dreher|sst	LIM homeobox transcription factor 1 alpha	protein-coding	6.813	13.646	5.984	nan	4.011	3.159	4.378	5.000	nan	8.264	4.585	3.044	nan	5.561	nan	9.297	6.418	6.753	4.321	1.964	2.254	nan	nan	3.959	nan
15562	chr9	117206625	117208110	+	0	NA	intron (NM_001172122, intron 1 of 13)	URR1A|DNA|hAT-Charlie	45116	NM_001172123	207181	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding	3.964	0.516	0.266	1.340	1.803	0.829	3.037	4.147	3.110	3.587	0.790	0.731	5.008	5.062	4.512	5.048	3.852	3.162	0.614	0.291	0.165	0.384	nan	0.380	4.436
8843	chr2	154392352	154396408	+	0	NA	intron (NM_009228, intron 2 of 7)	B1_Mus2|SINE|Alu	13704	NM_009228	20648	Mm.1541	NM_009228	ENSMUSG00000027488	Snta1	AW228934|Snt1	syntrophin, acidic 1	protein-coding	nan	4.410	1.911	2.905	0.973	0.608	2.738	2.686	nan	nan	1.314	0.929	nan	nan	3.059	6.052	3.100	nan	nan	1.705	2.142	4.559	2.439	2.277	nan
10612	chr4	131828924	131831353	+	0	NA	intron (NM_001083119, intron 1 of 30)	intron (NM_001083119, intron 1 of 30)	8140	NM_011214	19273	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding	7.224	9.245	3.427	7.441	4.680	2.198	5.918	5.692	4.887	5.686	6.019	3.294	5.062	7.990	7.287	8.559	4.245	6.912	5.773	5.420	4.381	6.848	4.744	3.227	9.958
11519	chr5	105721552	105726205	+	0	NA	intron (NM_178701, intron 1 of 2)	B4A|SINE|B4	23068	NM_178701	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	4.937	3.627	2.250	4.035	5.029	2.665	nan	2.649	3.183	3.564	0.982	0.888	2.483	3.909	4.187	5.999	3.934	5.012	nan	2.053	2.022	2.270	2.605	2.299	4.003
6472	chr17	28359666	28361113	+	0	NA	intron (NM_021478, intron 8 of 14)	MLT1F|LTR|ERVL-MaLR	4754	NM_021478	22157	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	4.539	8.550	3.159	5.900	2.715	0.760	6.437	5.207	3.748	6.321	6.133	2.988	4.578	4.165	6.087	6.201	3.730	4.765	5.341	2.538	3.559	5.937	4.749	5.722	9.227
1904	chr11	3959222	3965503	+	0	NA	Intergenic	Intergenic	-1613	NM_022889	64934	Mm.28659	NM_022889	ENSMUSG00000020430	Pes1	-	pescadillo ribosomal biogenesis factor 1	protein-coding	nan	0.521	0.286	5.556	2.676	1.255	2.528	3.879	3.290	5.614	0.863	0.596	6.047	7.159	4.894	10.506	4.717	8.180	1.682	nan	0.621	0.790	1.668	0.971	6.778
12892	chr6	149184115	149189002	+	0	NA	intron (NM_001113424, intron 1 of 6)	MTB_Mm|LTR|ERVL-MaLR	2154	NM_001113424	232566	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	8.988	0.756	0.380	nan	7.290	5.203	12.565	nan	6.649	8.411	2.918	1.323	12.787	12.881	7.884	10.971	9.154	9.327	0.647	nan	0.512	nan	0.529	0.474	nan
11413	chr5	91068792	91071324	+	0	NA	Intergenic	Intergenic	-4559	NM_007950	13874	Mm.4791	NM_007950	ENSMUSG00000029377	Ereg	EPR	epiregulin	protein-coding	4.649	6.473	2.253	3.413	1.988	0.745	5.196	7.168	3.791	4.082	3.530	4.798	5.017	6.635	6.899	6.457	3.467	5.835	3.724	1.493	0.532	4.592	2.122	1.260	5.532
14049	chr8	13648599	13649809	+	0	NA	intron (NM_009025, intron 1 of 23)	RMER17D2|LTR|ERVK	28383	NM_009025	19414	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	12.935	8.503	6.635	6.358	7.716	4.452	6.069	7.720	3.654	7.281	9.350	4.583	5.510	9.241	3.904	5.175	5.748	4.051	2.785	8.292	6.154	3.065	3.394	2.147	5.706
5043	chr15	10635109	10657394	+	0	NA	intron (NM_001166408, intron 2 of 17)	intron (NM_001166408, intron 2 of 17)	45958	NR_033541	100038608	Mm.450744	NR_033541		Gm10389	ENSMUSG00000072658	predicted gene 10389	ncRNA	7.730	1.308	0.608	5.213	5.153	3.077	10.717	11.020	6.557	9.147	3.437	2.190	11.063	11.335	8.594	8.467	7.972	9.230	0.628	0.763	0.760	0.438	0.595	0.552	8.491
1761	chr10	116432587	116434424	+	0	NA	intron (NM_021452, intron 2 of 2)	GA-rich|Low_complexity|Low_complexity	15384	NR_028107	67342	Mm.245800	NM_026098	ENSMUSG00000020164	Kcnmb4os1	1700058G18Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 4, opposite strand 1	ncRNA	7.054	0.729	0.734	2.873	3.890	2.813	5.292	7.644	2.985	3.712	4.283	3.710	4.147	5.305	3.295	2.661	4.354	3.509	1.783	3.040	2.416	1.932	2.358	1.953	4.100
13435	chr7	97277133	97291354	+	0	NA	intron (NM_001162477, intron 3 of 9)	L1M2a|LINE|L1	41721	NM_001177412	244144	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	8.004	4.880	2.283	7.101	6.378	4.136	5.143	6.980	5.430	6.968	4.193	2.705	5.400	7.785	5.771	nan	6.040	6.412	nan	3.140	2.083	2.091	2.571	2.173	4.805
8177	chr2	34962444	34966329	+	0	NA	Intergenic	B4|SINE|B4	-2614	NM_001326601	22029	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	9.210	8.337	3.173	6.745	3.910	2.124	3.174	5.996	5.376	9.236	2.901	1.952	6.503	7.553	5.368	9.232	7.128	8.040	3.601	2.022	2.125	3.230	2.524	2.280	8.549
13847	chr7	142926581	142928120	+	0	NA	Intergenic	Intergenic	-27384	NM_009377	21823	Mm.1292	NM_009377	ENSMUSG00000000214	Th	-	tyrosine hydroxylase	protein-coding	4.075	4.092	1.911	2.173	2.223	0.317	7.936	7.372	nan	1.282	2.973	1.355	6.839	6.744	4.582	4.465	7.093	4.652	1.919	2.623	1.640	1.952	2.980	2.646	7.071
9894	chr3	159508605	159512164	+	0	NA	intron (NM_029523, intron 2 of 11)	Lx7|LINE|L1	14951	NM_001172093	76131	Mm.371655	NM_029523	ENSMUSG00000028175	Depdc1a	5830484J08Rik|Depdc1	DEP domain containing 1a	protein-coding	6.185	0.740	0.420	3.792	6.519	3.842	6.367	3.317	6.890	5.405	5.524	3.631	9.773	8.905	5.027	5.159	6.569	7.814	0.997	0.567	0.503	0.424	0.569	0.542	2.989
8674	chr2	131333464	131340540	+	0	NA	intron (NM_178607, intron 1 of 5)	intron (NM_178607, intron 1 of 5)	15890	NM_178607	51902	Mm.477523	NM_178607	ENSMUSG00000048911	Rnf24	2810473M14Rik|4930505A13Rik|AI317164|C86507|D2Ertd504e	ring finger protein 24	protein-coding	4.868	2.254	1.199	1.967	5.013	3.064	6.835	6.955	3.195	6.490	1.967	2.384	5.085	5.225	4.354	5.264	3.521	3.269	nan	1.044	0.948	1.214	1.499	0.964	5.111
6856	chr17	74692779	74695950	+	0	NA	intron (NM_007566, intron 70 of 72)	intron (NM_007566, intron 70 of 72)	-23386	NM_152817	74196	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	7.533	9.848	3.147	9.705	3.941	2.658	9.105	7.261	nan	12.479	8.534	3.646	7.363	9.826	9.873	nan	8.016	8.928	4.593	1.940	3.205	6.042	2.714	4.649	15.656
5758	chr16	4892196	4893149	+	0	NA	intron (NM_029657, intron 1 of 16)	L1M5|LINE|L1	6572	NM_001252437	17237	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	3.140	0.747	0.886	2.104	3.226	1.570	1.745	2.046	2.239	2.773	0.809	1.309	1.967	3.794	2.311	2.282	2.006	3.078	1.069	1.626	0.892	1.005	1.037	1.187	2.255
2662	chr11	94490600	94492608	+	0	NA	exon (NM_027984, exon 9 of 10)	exon (NM_027984, exon 9 of 10)	-6294	NM_144827	217116	Mm.156123	NM_144827	ENSMUSG00000020867	Spata20	Tisp78	spermatogenesis associated 20	protein-coding	6.189	9.879	3.328	7.520	5.347	3.930	4.924	6.655	3.977	7.203	5.065	3.792	4.615	6.248	6.556	7.673	4.167	5.692	3.774	nan	4.746	4.111	nan	3.793	7.978
1492	chr10	79743263	79745593	+	0	NA	intron (NM_172551, intron 2 of 20)	intron (NM_172551, intron 2 of 20)	2153	NM_172551	216151	Mm.39001	NM_172551	ENSMUSG00000020329	Polrmt	1110018N15Rik|4932416K13	polymerase (RNA) mitochondrial (DNA directed)	protein-coding	8.274	1.246	0.472	8.622	3.601	1.707	7.621	8.330	6.389	8.723	2.379	1.682	9.262	12.313	11.456	12.359	5.944	10.365	nan	0.568	0.262	1.600	0.205	0.188	16.562
7332	chr18	65376030	65381928	+	0	NA	intron (NM_001037294, intron 1 of 12)	intron (NM_001037294, intron 1 of 12)	14909	NM_001037294	225638	Mm.296528	NM_001037294	ENSMUSG00000032845	Alpk2	Gm549|Hak	alpha-kinase 2	protein-coding	6.152	0.703	0.468	1.365	1.039	0.566	6.105	7.462	2.671	2.919	0.494	0.592	6.825	4.168	5.654	5.946	4.804	5.039	0.817	0.470	0.288	0.647	0.717	0.632	5.304
13050	chr7	28389580	28401704	+	0	NA	exon (NM_019458, exon 5 of 14)	exon (NM_019458, exon 5 of 14)	2646	NM_019458	54624	Mm.7916	NM_019458	ENSMUSG00000003437	Paf1	5730511K23Rik|AA675045	Paf1, RNA polymerase II complex component	protein-coding	2.773	1.672	0.638	3.223	3.344	1.559	2.258	4.074	2.042	2.394	2.384	1.220	1.157	1.711	1.882	2.267	1.512	3.275	4.555	3.430	2.819	5.959	4.399	3.660	3.137
6438	chr17	26751198	26759965	+	0	NA	intron (NM_029870, intron 4 of 8)	intron (NM_029870, intron 4 of 8)	-25498	NM_172149	224630	Mm.21795	NM_172149	ENSMUSG00000024191	Bnip1	2010005M06Rik|5930429G21Rik|Sec20	BCL2/adenovirus E1B interacting protein 1	protein-coding	8.018	2.026	0.769	7.834	6.436	3.928	7.269	7.882	6.222	6.486	5.891	3.374	6.322	9.943	6.274	nan	3.496	10.807	2.439	1.516	1.175	4.272	1.795	1.270	9.148
14483	chr8	96714706	96719556	+	0	NA	Intergenic	Intergenic	-171158	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	3.379	2.229	0.952	2.630	2.720	2.133	1.856	6.557	1.410	1.779	0.910	1.635	2.626	3.529	2.613	2.828	2.559	1.984	2.240	2.377	2.929	4.986	1.155	1.241	2.433
10937	chr4	150223272	150240285	+	0	NA	Intergenic	Intergenic	-5419	NM_023119	13806	Mm.70666	NM_023119	ENSMUSG00000063524	Eno1	0610008I15|AL022784|Eno-1|MBP-1	enolase 1, alpha non-neuron	protein-coding	6.248	nan	0.710	5.738	7.321	4.397	5.878	6.719	6.590	7.296	3.688	3.677	6.707	9.913	6.611	6.710	5.099	8.532	2.354	1.171	0.858	2.964	1.404	1.182	5.374
13290	chr7	74991334	74993552	+	0	NA	Intergenic	Intergenic	-37768	NR_131122	75205	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	-	RIKEN cDNA 4930533N22 gene	ncRNA	0.455	0.571	0.331	nan	0.305	0.495	0.200	0.465	0.327	0.349	5.980	0.771	0.124	0.189	0.494	nan	0.515	0.456	0.843	0.461	0.435	0.708	0.513	0.589	nan
11342	chr5	73225384	73227968	+	0	NA	intron (NM_028194, intron 1 of 62)	B3|SINE|B2	29942	NM_028194	72313	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	1.380	9.418	6.582	0.507	1.156	0.562	0.871	0.969	0.880	0.631	0.747	0.608	0.300	1.083	0.527	nan	0.783	nan	0.668	1.081	0.666	0.464	0.786	0.813	0.732
15575	chr9	118834047	118839026	+	0	NA	intron (NM_001113514, intron 6 of 13)	L1MC4|LINE|L1	-90000	NM_133710	69274	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	7.771	1.702	0.497	7.187	3.328	2.441	7.600	7.086	4.150	10.170	6.911	2.797	5.868	8.371	6.353	8.529	5.698	7.735	4.817	3.930	3.722	4.647	nan	5.367	12.209
1100	chr10	12532592	12534287	+	0	NA	intron (NM_011682, intron 51 of 73)	intron (NM_011682, intron 51 of 73)	328296	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	4.763	7.643	3.706	7.169	7.654	5.145	4.103	2.624	3.855	4.086	2.198	0.834	4.700	5.121	3.464	6.069	4.273	4.563	1.466	2.110	2.305	1.803	1.389	1.572	5.798
15326	chr9	77549720	77552864	+	0	NA	Intergenic	Intergenic	-6440	NM_001146048	214345	Mm.28534	NM_172528	ENSMUSG00000032352	Lrrc1	A430093J20Rik|AU016091|D030059I21|mKIAA4018	leucine rich repeat containing 1	protein-coding	6.122	1.009	0.595	2.349	2.092	0.757	2.552	5.471	7.278	8.077	6.401	3.322	7.602	4.644	4.941	8.489	3.615	7.708	1.396	nan	0.741	1.519	0.887	0.547	5.658
2861	chr11	104177620	104178887	+	0	NA	Intergenic	Intergenic	-8074	NM_001082535	237958	Mm.117063	NM_199019	ENSMUSG00000049506	Sppl2c	4933407P14Rik|IMP5	signal peptide peptidase 2C	protein-coding	3.939	0.886	0.222	3.592	2.130	1.486	5.195	4.012	2.616	3.472	1.630	2.564	6.020	3.318	3.433	6.048	3.873	2.803	1.968	1.089	1.942	3.842	1.440	1.121	2.414
9373	chr3	68295727	68300870	+	0	NA	intron (NM_001113420, intron 1 of 6)	intron (NM_001113420, intron 1 of 6)	-169885	NM_001282045	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	6.638	2.020	0.672	8.580	4.817	3.094	10.659	4.396	4.451	7.111	6.031	3.470	9.148	8.254	8.237	9.810	4.975	9.500	2.422	1.231	1.342	3.042	1.512	1.929	15.203
8140	chr2	32462846	32466511	+	0	NA	Intergenic	Intergenic	-13208	NM_146118	227731	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	5.124	6.801	1.740	5.258	2.336	1.398	6.713	5.264	nan	3.402	0.781	0.636	5.155	7.128	6.292	9.174	8.075	4.636	1.679	1.045	1.132	1.847	0.920	0.697	11.982
1719	chr10	110985843	110988851	+	0	NA	intron (NM_172554, intron 1 of 16)	intron (NM_172554, intron 1 of 16)	22719	NM_172554	320150	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|Hip14	zinc finger, DHHC domain containing 17	protein-coding	nan	0.875	0.882	1.222	1.466	0.459	2.122	1.964	3.095	2.940	1.939	3.729	1.864	2.212	2.275	1.964	1.987	2.995	0.950	0.437	0.432	0.732	0.428	0.388	1.523
15104	chr9	56766856	56768724	+	0	NA	Intergenic	Intergenic	-82537	NM_181074	235402	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	1.039	0.903	0.783	0.493	0.454	0.192	0.693	1.267	0.677	0.748	1.293	0.992	0.487	1.071	0.570	1.102	0.659	1.145	7.379	3.976	2.615	7.070	3.670	3.561	1.218
14996	chr9	43334892	43336501	+	0	NA	3' UTR (NM_023655, exon 9 of 9)	3' UTR (NM_023655, exon 9 of 9)	24933	NM_023655	72169	Mm.273277	NM_023655	ENSMUSG00000032013	Trim29	1110047J21Rik|2810431N19Rik|4732461M22Rik|AI119726	tripartite motif-containing 29	protein-coding	3.030	0.489	0.082	0.696	0.357		2.793	2.236	1.718	1.859	1.626	0.655	2.134	1.309	5.475	3.144	1.473	2.403	3.162	0.648	0.213	4.068	1.078	0.768	6.477
12075	chr6	17434853	17439063	+	0	NA	Intergenic	L1Md_A|LINE|L1	-26999	NM_008591	17295	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	4.325	nan	0.448	2.405	2.139	1.236	3.375	6.989	3.894	3.216	2.320	0.728	5.589	5.631	4.498	10.053	6.727	5.184	0.427	0.462	0.169	0.404	0.663	0.373	3.343
8790	chr2	150420317	150423839	+	0	NA	intron (NM_001310645, intron 1 of 3)	MTA_Mm|LTR|ERVL-MaLR	29423	NM_001310645	668923	Mm.393876	NM_001177550	ENSMUSG00000068130	Zfp442	OTTMUSG00000015730|ZIPO-II	zinc finger protein 442	protein-coding	4.541	3.744	4.018	2.025	3.614	2.874	4.289	4.865	2.616	3.198	1.448	0.613	4.841	5.705	2.753	3.808	4.843	4.719	nan	1.116	0.808	0.679	0.733	0.598	3.256
7505	chr19	6362305	6365798	+	0	NA	non-coding (NR_122118, exon 1 of 12)	non-coding (NR_122118, exon 1 of 12)	361	NR_122118	22668	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	6.408	11.778	3.598	8.881	3.577	2.986	7.303	9.046	4.986	10.462	5.222	3.036	6.126	7.973	7.626	9.467	7.340	8.093	3.314	1.756	2.090	5.903	2.714	3.261	11.338
14741	chr8	125507016	125508248	+	0	NA	Intergenic	Intergenic	-14922	NM_001081337	244668	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	5.467	nan	0.952	nan	6.866	4.335	3.646	9.374	2.642	2.373	1.985	4.224	4.161	3.562	2.821	3.636	6.236	3.403	nan	1.917	1.933	nan	1.254	nan	2.368
5755	chr16	4776484	4778383	+	0	NA	intron (NM_025670, intron 1 of 5)	intron (NM_025670, intron 1 of 5)	12502	NM_025670	66626	Mm.157648	NM_025670	ENSMUSG00000004071	Cdip1	2700048O17Rik|5730403B10Rik|AU018521|AW742692|CDIP	cell death inducing Trp53 target 1	protein-coding	3.841	1.776	0.345	1.587	1.917	1.398	1.214	3.744	3.246	2.147	6.699	2.758	2.497	2.278	1.301	4.172	1.382	4.397	1.231	0.958	0.910	1.341	1.285	0.968	3.375
5849	chr16	18704442	18706266	+	0	NA	Intergenic	Intergenic	-71493	NM_013805	12741	Mm.22768	NM_013805	ENSMUSG00000041378	Cldn5	AI854493|MBEC1|Tmvcf	claudin 5	protein-coding	4.852	1.067	0.569	3.652	2.517	0.996	3.034	3.016	3.610	nan	1.802	1.562	3.688	4.092	4.118	6.467	2.073	5.244	1.900	1.163	0.583	1.907	1.004	0.384	5.022
7529	chr19	8831027	8832373	+	0	NA	3' UTR (NM_001081196, exon 14 of 14)	3' UTR (NM_001081196, exon 14 of 14)	-5767	NM_001136064	14705	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	10.604	12.212	5.299	11.474	7.954	5.280	9.195	13.135	nan	11.875	8.297	4.670	7.447	12.696	10.062	11.917	10.646	9.692	3.065	2.794	3.155	5.833	4.213	5.165	17.356
71	chr1	33544239	33546246	+	0	NA	intron (NM_008922, intron 7 of 13)	intron (NM_008922, intron 7 of 13)	124552	NM_008922	19076	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding	2.890	0.596	0.706	2.097	2.656	1.768	2.327	0.784	2.616	2.269	0.353	0.303	3.333	3.877	2.460	3.087	1.594	4.305	0.808	0.632	0.488	0.800	1.069	0.380	3.586
13309	chr7	77763454	77764739	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	813742	NM_008746	18213	Mm.33496	NM_008746	ENSMUSG00000059146	Ntrk3	AW125844|Ntrk3_tv3|TrkC	neurotrophic tyrosine kinase, receptor, type 3	protein-coding	1.340	0.195	0.201	nan	1.579	1.483	1.346	1.491	2.184	2.685	0.230	0.229	3.064	3.865	2.611	2.375	0.697	2.227	0.299	0.083		0.830	0.337	0.335	2.272
1481	chr10	79494418	79499439	+	0	NA	Intergenic	RLTR9E|LTR|ERVK	27970	NM_001104537	625029	Mm.469865	NM_001104537	ENSMUSG00000091381	Vmn2r83	EG625029	vomeronasal 2, receptor 83	protein-coding	9.045	6.990	2.121	9.966	6.967	5.532	5.871	7.663	6.990	9.376	4.042	2.637	6.438	11.915	8.923	9.572	6.227	9.442	nan	1.466	1.861	1.690	1.242	1.303	11.962
9666	chr3	105873548	105874746	+	0	NA	intron (NM_027025, intron 1 of 6)	ID_B1|SINE|B4	3289	NM_001174169	69296	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik	transmembrane and immunoglobulin domain containing 3	protein-coding	2.425	0.513	0.314	2.004	1.930	0.500	1.696	1.386	2.872	2.522	0.658	0.616	3.224	3.806	2.808	3.855	3.116	2.157	0.671	0.282	0.112	0.595	0.269	0.342	1.596
2927	chr11	107871502	107873491	+	0	NA	Intergenic	Intergenic	38866	NM_080644	140723	Mm.87663	NM_080644	ENSMUSG00000040373	Cacng5	-	calcium channel, voltage-dependent, gamma subunit 5	protein-coding	4.701	0.845	1.090	2.086	3.305	2.354	4.693	4.546	nan	2.274	1.053	1.216	2.495	3.494	3.502	3.689	2.602	3.310	1.529	1.767	0.769	nan	1.414	1.156	3.746
8054	chr2	27546103	27549889	+	0	NA	Intergenic	ORR1C1|LTR|ERVL-MaLR	32849	NM_080848	140858	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	3.937	2.193	0.985	3.832	1.078	0.471	2.372	2.064	1.674	2.082	1.911	0.938	1.047	2.079	2.734	3.579	2.196	2.790	0.844	1.051	0.481	1.441	0.881	0.733	5.315
7608	chr19	16347302	16349665	+	0	NA	intron (NM_008139, intron 5 of 6)	intron (NM_008139, intron 5 of 6)	-33479	NR_105832	102465218		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	4.363	1.236	1.134	3.008	5.819	3.317	9.413	8.210	5.295	5.397	4.087	2.893	6.168	8.053	7.433	6.883	6.650	6.783	0.312	0.868	0.593	0.852	0.828	1.073	6.497
6535	chr17	31930048	31933230	+	0	NA	Intergenic	Intergenic	-75847	NM_010831	17691	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Msk|Sik|Snf1lk	salt inducible kinase 1	protein-coding	3.921	1.896	0.648	4.647	3.127	1.528	5.072	3.355	5.568	8.557	5.368	1.895	5.160	7.600	5.735	9.171	4.396	6.246	1.168	1.295	0.814	3.021	1.049	0.784	11.075
11276	chr5	65510826	65512826	+	0	NA	Intergenic	Intergenic	-18991	NM_133697	68552	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	2.755	2.341	1.201	4.535	0.966	0.210	1.299	1.065	2.161	2.466	0.981	0.551	1.611	1.925	1.768	2.603	1.298	3.843	0.659	0.440	0.348	nan	0.113	0.074	2.949
11180	chr5	36720209	36729867	+	0	NA	Intergenic	L1_Mus1|LINE|L1	23641	NM_133724	117197	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	6.708	1.990	1.013	3.269	2.720	1.410	7.406	4.363	3.787	4.583	3.242	1.760	7.098	7.063	nan	6.679	nan	5.238	1.997	1.053	0.901	2.223	1.684	1.367	7.886
4564	chr14	28213906	28216547	+	0	NA	intron (NM_177814, intron 13 of 15)	intron (NM_177814, intron 13 of 15)	-290247	NM_009524	22418	Mm.287544	NM_009524	ENSMUSG00000021994	Wnt5a	8030457G12Rik|Wnt-5a	wingless-type MMTV integration site family, member 5A	protein-coding	4.760	6.945	2.572	4.385	1.617	0.420	2.913	4.915	3.594	3.253	2.760	1.642	3.231	4.152	3.389	nan	nan	nan	5.148	4.235	3.446	nan	5.592	3.991	6.749
9796	chr3	127597185	127599801	+	0	NA	intron (NM_197997, intron 15 of 25)	intron (NM_197997, intron 15 of 25)	-34652	NM_009718	11924	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	3.825	3.989	1.839	5.012	2.946	2.268	3.574	4.006	3.815	7.665	6.172	5.022	4.172	5.009	3.742	nan	3.646	nan	2.253	1.845	2.226	2.725	1.737	2.417	4.909
512	chr1	120538548	120548240	+	0	NA	Intergenic	Intergenic	-38310	NM_010766	17167	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	5.201	0.806	0.415	4.470	3.313	1.626	7.338	4.054	5.306	6.526	1.969	2.254	9.514	9.793	6.769	12.780	7.315	7.275	1.849	1.190	0.854	2.732	1.431	0.965	6.474
5974	chr16	30112180	30116740	+	0	NA	Intergenic	Intergenic	49103	NM_008235	15205	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hairy and enhancer of split 1 (Drosophila)	protein-coding	5.898	0.628	0.650	3.050	1.891	0.816	4.559	5.046	3.592	3.290	3.030	2.200	nan	5.386	5.892	nan	5.100	6.529	3.345	2.050	1.190	3.590	nan	2.965	9.187
463	chr1	94595251	94597954	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-200840	NR_040473	74689	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	nan	nan	0.622	0.749	0.481	0.225	0.734	nan	0.511	0.721	0.858	0.824	0.368	0.613	0.382	nan	0.506	nan	nan	2.206	1.229	nan	6.172	4.039	nan
517	chr1	121183507	121192957	+	0	NA	Intergenic	L1MD1|LINE|L1	100827	NR_110450	98452	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	7.675	0.436	0.423	4.153	4.296	2.789	7.628	7.814	4.324	7.236	4.090	3.815	9.963	8.227	6.711	10.822	7.818	6.111	4.092	2.606	2.580	4.395	3.087	2.408	9.502
5887	chr16	21337851	21340597	+	0	NA	Intergenic	Intergenic	-5868	NR_131983	76222	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	6.959	2.015	0.664	5.009	2.298	1.134	5.081	4.239	4.804	7.067	6.784	4.287	7.476	8.033	5.591	7.558	3.509	7.361	6.524	2.532	1.683	7.167	2.894	1.743	8.680
11170	chr5	35925183	35926985	+	0	NA	intron (NM_027373, intron 1 of 16)	intron (NM_027373, intron 1 of 16)	32765	NM_027373	70292	Mm.125167	NM_027373	ENSMUSG00000029094	Afap1	2600003E23Rik|9630044L16Rik|AI848729|Afap|mKIAA3018	actin filament associated protein 1	protein-coding	6.698	8.633	4.050	5.774	2.272	1.575	3.872	5.420	4.842	5.195	3.377	2.290	4.494	5.949	6.041	7.405	3.736	7.373	2.792	0.963	1.384	3.783	1.095	0.974	8.006
8379	chr2	75666861	75673019	+	0	NA	TTS (NM_198090)	TTS (NM_198090)	10650	NR_033513	627828	Mm.459502	NR_033513	ENSMUSG00000092086	Gm6793	EG627828	heterogeneous nuclear ribonucleoprotein A3 pseudogene	pseudo	5.544	4.780	2.183	nan	2.658	1.612	4.258	6.736	3.939	5.180	3.473	2.787	5.395	5.183	nan	7.837	5.753	4.952	2.605	1.966	1.726	2.544	1.897	2.170	7.220
11570	chr5	112753137	112755670	+	0	NA	intron (NM_028901, intron 39 of 43)	ORR1E|LTR|ERVL-MaLR	-38889	NR_040675	67360	Mm.59218	NR_040675	ENSMUSG00000098230	1700095B10Rik	-	RIKEN cDNA 1700095B10 gene	ncRNA	8.216	8.061	4.881	7.022	9.988	7.171	8.882	7.961	4.759	6.868	8.912	4.038	4.813	8.952	6.472	6.568	6.551	5.613	nan	4.711	5.499	3.402	4.518	5.607	6.542
1363	chr10	66486521	66490433	+	0	NA	Intergenic	L1Md_F2|LINE|L1	343181	NR_131070	77198	Mm.107617	NR_131070		4930407I19Rik	-	RIKEN cDNA 4930407I19 gene	ncRNA	8.203	1.591	1.305	3.753	6.850	6.681	5.034	5.953	3.877	4.707	3.199	2.936	4.884	6.686	5.012	4.816	6.663	nan	1.241	2.247	2.416	2.710	0.816	0.930	5.251
6691	chr17	47573570	47576488	+	0	NA	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	-18438	NM_007632	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	7.327	1.595	0.504	6.610	5.208	2.587	11.273	11.431	5.705	8.262	8.161	5.051	7.293	10.625	8.030	10.626	7.734	8.326	4.489	1.676	2.808	3.217	3.586	3.748	13.040
1109	chr10	17246263	17252234	+	0	NA	Intergenic	Intergenic	-153466	NR_038020	100504235	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	4.946	1.076	0.632	3.025	2.157	0.993	3.821	5.974	3.805	3.694	1.950	1.640	5.170	4.947	5.521	6.043	4.909	4.959	1.964	2.066	1.132	4.086	1.288	0.698	4.372
3051	chr11	117847141	117860796	+	0	NA	3' UTR (NM_001012273, exon 3 of 3)	3' UTR (NM_001012273, exon 3 of 3)	4731	NM_009689	11799	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	7.671	nan	1.743	7.966	6.344	3.284	5.950	7.696	5.827	7.595	6.857	2.696	6.458	8.656	7.190	8.121	5.317	7.953	3.099	nan	2.182	4.373	1.863	1.501	7.905
6787	chr17	66011004	66018136	+	0	NA	intron (NM_001025572, intron 8 of 12)	intron (NM_001025572, intron 8 of 12)	62476	NM_001025572	106585	Mm.34706	NM_001025572	ENSMUSG00000034647	Ankrd12	2900001A12Rik|AI447928|ANCO-2|AV347965|GAC-1|mKIAA0874	ankyrin repeat domain 12	protein-coding	4.658	0.648	0.363	5.663	7.955	4.021	4.493	4.814	4.792	6.620	1.746	2.651	4.647	9.365	5.935	6.449	4.128	8.520	1.346	0.895	0.772	0.895	1.611	1.171	4.533
2067	chr11	32354527	32356663	+	0	NA	intron (NM_177364, intron 1 of 12)	MTC|LTR|ERVL-MaLR	7784	NM_177364	268396	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	6.449	7.087	2.248	8.418	5.044	4.007	5.990	6.518	3.862	11.735	5.148	2.740	4.273	8.262	8.184	9.521	5.741	8.017	1.914	1.630	2.926	3.463	1.423	4.000	11.659
15765	chrX	92637623	92642051	+	0	NA	Intergenic	Lx9|LINE|L1	-40265	NM_173783	215641	Mm.327999	NM_173783	ENSMUSG00000067649	Mageb18	B430216B18Rik	melanoma antigen family B, 18	protein-coding	3.968	1.683	0.501	4.080	2.888	2.773	3.560	3.809	2.985	3.650	3.714	1.021	4.193	4.526	3.843	5.496	nan	4.691	1.828	0.964	1.218	1.814	1.108	1.238	5.167
8929	chr2	160628990	160633145	+	0	NA	Intergenic	Intergenic	-14830	NM_009408	21969	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	4.797	1.818	0.955	6.261	2.680	1.165	2.421	5.207	4.500	4.963	1.170	0.748	3.615	3.805	2.488	3.830	2.764	5.383	nan	0.756	0.368	1.245	0.589	0.319	nan
10717	chr4	135608837	135613746	+	0	NA	Intergenic	RMER19B2|LTR|ERVK	-15364	NR_015613	73937	Mm.292326	NM_028688	ENSMUSG00000086788	1700029M20Rik	4930406E24Rik	RIKEN cDNA 1700029M20 gene	ncRNA	nan	3.481	1.391	5.558	6.657	5.034	3.621	4.046	4.417	5.056	5.947	2.646	3.304	7.942	3.801	3.119	2.699	nan	2.398	1.540	2.371	2.742	nan	3.160	2.974
8219	chr2	38788120	38790588	+	0	NA	intron (NM_010264, intron 3 of 10)	intron (NM_010264, intron 3 of 10)	-4839	NM_001159549	14536	Mm.439703	NM_010264	ENSMUSG00000063972	Nr6a1	1700113M01Rik|Gcnf|NCNF|RTR	nuclear receptor subfamily 6, group A, member 1	protein-coding	2.712	0.838	0.368	1.165	1.186	0.403	2.562	nan	1.758	nan	5.088	4.040	2.623	2.421	1.862	2.749	2.529	1.874	1.366	1.409	1.141	1.187	1.484	1.337	2.144
2154	chr11	50137954	50140640	+	0	NA	intron (NM_001290760, intron 2 of 21)	intron (NM_001290760, intron 2 of 21)	7937	NM_029745	76795	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	7.784	11.927	4.554	8.846	6.841	4.321	7.166	6.849	5.841	8.544	6.367	4.651	7.400	9.501	9.161	9.921	6.287	8.026	nan	3.550	4.026	nan	nan	3.198	8.117
6023	chr16	33679694	33681795	+	0	NA	Intergenic	MIRc|SINE|MIR	-3722	NM_175256	77446	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629|OTTMUSG00000027315	heart development protein with EGF-like domains 1	protein-coding	3.514	1.801	0.982	5.577	2.108	0.952	1.653	3.043	2.311	2.429	0.840	0.739	1.513	2.635	2.336	3.330	1.733	3.939	0.853	0.910	0.580	0.712	1.242	0.673	3.087
4171	chr13	56140609	56141950	+	0	NA	Intergenic	MTC|LTR|ERVL-MaLR	-5729	NM_001159513	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	3.236	0.407	0.707	1.895	2.720	1.144	1.668	3.290	3.086	2.384	0.978	1.250	3.053	4.077	3.250	3.422	2.303	nan	1.076	2.023	2.235	1.682	1.173	0.625	nan
14814	chr8	129243515	129245906	+	0	NA	Intergenic	L1_Mus1|LINE|L1	-10664	NM_153780	72139	Mm.426514	NM_153780	ENSMUSG00000071302	2610044O15Rik8	2610044O15Rik	RIKEN cDNA 2610044O15 gene	protein-coding	4.027	3.835	1.899	4.045	3.640	1.931	nan	5.672	4.303	5.330	1.836	1.753	4.380	6.766	4.217	7.267	4.783	4.472	nan	0.906	1.281	2.347	1.196	nan	4.949
12879	chr6	147833833	147836714	+	0	NA	Intergenic	Intergenic	145032	NR_033636	100039727	Mm.396220	NR_033636	ENSMUSG00000085077	1700049E15Rik	Gm15761|OTTMUSG00000026044	RIKEN cDNA 1700049E15 gene	ncRNA	5.962	0.759	0.410	1.903	3.139	1.944	11.587	9.621	4.947	5.598	1.760	1.481	7.581	7.556	9.414	11.453	9.871	6.110	0.646	nan	0.425	nan	0.569	0.326	5.157
11921	chr5	144277929	144283720	+	0	NA	TTS (NR_040432)	TTS (NR_040432)	3763	NR_040432	100504231	Mm.441035	NR_040432	ENSMUSG00000086894	Gm15708	OTTMUSG00000025583	predicted gene 15708	ncRNA	4.433	1.907	1.333	nan	6.050	4.533	2.180	3.391	nan	3.621	4.564	2.241	1.847	3.780	3.172	nan	2.131	4.622	1.013	1.088	0.995	0.866	0.784	0.882	nan
742	chr1	153531459	153534659	+	0	NA	intron (NM_028749, intron 4 of 11)	PB1D10|SINE|Alu	16655	NM_028749	74091	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	9.645	3.663	1.623	5.983	5.547	2.704	3.545	4.096	4.855	7.077	5.489	2.165	3.837	7.619	4.457	5.926	4.572	4.724	nan	1.747	0.804	1.119	nan	0.947	5.178
12238	chr6	52124823	52130676	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	24800	NR_110440	102635415	Mm.333063	NR_110440	ENSMUSG00000085412	Halr1	Gm15055|Haunt|Linchoxa1|OTTMUSG00000018881|linc-Evx1|linc-Hoxa1|linc1547	Hoxa adjacent long noncoding RNA 1	ncRNA	4.021	2.428	0.835	5.742	2.270	1.106	1.305	1.088	2.685	3.211	1.071	0.688	1.054	2.326	2.139	3.272	1.550	3.332	nan	0.737	0.426	0.732	0.384	0.326	3.303
7712	chr19	32829039	32836052	+	0	NA	Intergenic	L1MEf|LINE|L1	74968	NM_008960	19211	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|TEP1	phosphatase and tensin homolog	protein-coding	nan	13.806	4.891	8.527	4.184	2.435	7.132	nan	5.299	9.263	nan	3.318	5.150	7.476	7.097	8.499	7.331	8.165	nan	2.087	2.273	5.003	nan	2.705	12.096
11698	chr5	123793897	123796458	+	0	NA	intron (NM_001042421, intron 41 of 63)	ID_B1|SINE|B4	45451	NM_001042421	208628	Mm.441089	NM_001042421	ENSMUSG00000029414	Kntc1	D330012D13|jgl	kinetochore associated 1	protein-coding	6.209	16.734	6.280	9.160	2.164	1.125	8.427	7.444	3.515	10.010	9.304	4.502	6.734	6.931	9.861	9.480	6.465	8.330	9.234	2.960	5.819	9.899	nan	11.441	15.039
58	chr1	23260734	23266162	+	0	NA	Intergenic	Intergenic	-8821	NR_029533	387225		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	8.758	nan	0.669	6.668	4.276	2.919	6.248	6.267	5.167	7.010	3.997	3.074	7.124	6.407	5.906	9.606	8.901	7.010	2.857	2.286	1.859	3.930	2.976	3.181	6.419
8473	chr2	101800457	101802281	+	0	NA	intron (NM_001110849, intron 2 of 9)	MER102c|DNA|hAT-Charlie	-3662	NM_001083810	72446	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	1.202	0.604	0.087	1.169	0.422	0.156	1.728	1.141	1.548	1.441	0.224	0.108	3.548	1.995	2.108	3.892	1.749	3.406	0.562	0.568	0.355	0.969	0.193	0.261	5.203
4980	chr14	121764923	121771829	+	0	NA	intron (NM_134074, intron 1 of 52)	intron (NM_134074, intron 1 of 52)	29358	NM_134074	105445	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	5.069	6.604	2.143	3.684	3.914	2.230	3.842	4.880	2.479	2.472	2.225	1.194	1.871	4.612	nan	2.244	1.673	3.012	3.575	3.627	2.535	4.035	5.307	4.055	3.014
4086	chr13	47199413	47202606	+	0	NA	intron (NM_001170643, intron 1 of 7)	intron (NM_001170643, intron 1 of 7)	7006	NM_001170643	218215	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	6.532	10.658	3.940	6.822	6.054	3.928	5.201	5.889	3.582	8.703	5.605	3.267	4.192	7.891	6.410	7.197	4.888	6.514	6.713	nan	4.057	7.616	7.625	8.393	nan
12777	chr6	134648363	134657053	+	0	NA	intron (NM_026371, intron 2 of 3)	B4|SINE|B4	11768	NM_026371	67774	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	6.300	1.791	1.148	6.012	4.612	2.671	6.735	9.664	7.346	8.295	3.663	2.158	9.020	11.089	9.759	9.112	7.254	8.565	4.129	1.555	1.662	4.816	2.704	2.099	6.411
6028	chr16	33891216	33893384	+	0	NA	intron (NM_010580, intron 5 of 14)	intron (NM_010580, intron 5 of 14)	62635	NM_001145884	16419	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	5.597	0.979	0.909	4.915	2.408	0.764	5.755	5.153	2.176	3.454	3.783	1.957	5.566	6.527	4.746	4.189	3.007	3.724	3.310	1.561	0.355	1.705	3.327	2.245	6.156
15526	chr9	110604912	110606407	+	0	NA	intron (NM_001081340, intron 18 of 20)	intron (NM_001081340, intron 18 of 20)	18734	NM_026012	67169	Mm.46680	NM_026012	ENSMUSG00000032491	Nradd	2610311B09Rik|BB104149|NRDD|NRH2|PLAIDD	neurotrophin receptor associated death domain	protein-coding	1.847	1.690	0.264	2.130	0.971	0.581	2.557	4.298	nan	1.798	3.155	2.150	2.704	3.270	3.568	4.587	1.437	3.305	2.212	0.593	0.631	3.728	1.627	0.393	6.114
12488	chr6	94144290	94146383	+	0	NA	intron (NR_130996, intron 1 of 1)	intron (NR_130996, intron 1 of 1)	92106	NR_130996	78178	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	3.546	0.306	0.060	2.694	2.733	1.247	5.619	4.627	3.390	3.994	3.220	1.302	7.331	7.729	7.101	9.810	4.991	7.955	nan	nan	0.581	1.158	0.415	0.432	5.252
3906	chr13	28635375	28637631	+	0	NA	intron (NR_045053, intron 5 of 8)	intron (NR_045053, intron 5 of 8)	74370	NR_105787	102466635		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	3.470	0.749	0.320	1.422	1.566	0.533	6.895	4.147	2.595	3.200	1.392	1.333	4.376	4.556	5.944	5.713	3.391	2.656	0.913	0.604	0.217	1.506	0.391	0.238	7.465
11625	chr5	117609069	117611520	+	0	NA	intron (NM_001312914, intron 4 of 19)	RSINE1|SINE|B4	196292	NM_001312914	333050	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	4.429	12.606	7.973	3.648	4.689	3.128	4.972	4.691	5.491	5.406	9.796	4.482	4.023	5.112	5.071	4.322	2.967	4.322	2.228	nan	1.974	1.587	nan	1.249	4.128
9633	chr3	104092188	104094358	+	0	NA	intron (NM_001159354, intron 3 of 20)	intron (NM_001159354, intron 3 of 20)	-124957	NR_030676	100125931	Mm.400392	NR_030676	ENSMUSG00000089998	Phtf1os	A130049A11Rik	putative homeodomain transcription factor 1, opposite strand	ncRNA	5.886	0.370	0.121	2.622	2.712	1.467	9.190	4.427	6.131	5.791	6.100	3.248	8.167	8.015	nan	6.835	7.144	7.150	0.854	0.654	0.681	0.916	0.782	0.955	5.621
2425	chr11	72317230	72319834	+	0	NA	intron (NM_001099688, intron 3 of 3)	intron (NM_001099688, intron 3 of 3)	4088	NM_001099688	628100	Mm.390365	NM_001099688	ENSMUSG00000070388	Fbxo39	1700010H23Rik	F-box protein 39	protein-coding	1.103	0.904	0.206	1.108	0.507	0.213	1.376	2.780	1.898	2.101	4.819	0.859	2.510	5.288	1.651	2.598	1.521	1.486	0.540	0.279	0.074	0.701	nan	0.063	2.247
15829	chrX	138901724	138905135	+	0	NA	Intergenic	L1_Mus3|LINE|L1	-11001	NM_013724	27206	Mm.482319	NM_013724	ENSMUSG00000052854	Nrk	AA407323|AA409510|AI225895|AV168563|AW538185|Nesk	Nik related kinase	protein-coding	3.943	0.565	0.256	2.281	3.837	2.083	5.324	8.159	3.879	5.404	2.601	1.651	5.084	5.516	4.770	5.317	4.033	4.425	1.105	0.960	0.601	0.813	0.722	0.384	3.326
8646	chr2	127951036	127954240	+	0	NA	intron (NM_028765, intron 9 of 17)	L1MDa|LINE|L1	98010	NM_028765	74121	Mm.244835	NM_028765	ENSMUSG00000027380	Acoxl	1200014P05Rik|AV025673	acyl-Coenzyme A oxidase-like	protein-coding	8.100	9.946	2.802	8.828	3.091	1.926	7.673	10.402	4.817	10.911	4.970	3.092	6.738	8.526	9.084	12.562	6.560	8.783	nan	1.684	2.976	4.159	2.725	2.869	17.547
1703	chr10	107767641	107773744	+	0	NA	intron (NM_001177567, intron 53 of 57)	intron (NM_001177567, intron 53 of 57)	-50665	NM_001081432	237523	Mm.391418	NM_001081432	ENSMUSG00000035916	Ptprq	-	protein tyrosine phosphatase, receptor type, Q	protein-coding	nan	5.869	2.258	5.390	4.330	2.937	5.481	5.952	nan	9.597	4.850	3.149	5.738	5.161	5.851	6.381	4.555	6.098	4.057	1.691	1.944	3.021	3.389	3.129	7.804
14037	chr8	13162390	13165014	+	0	NA	intron (NM_010684, intron 1 of 8)	B1F2|SINE|Alu	4541	NM_010684	16783	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B	lysosomal-associated membrane protein 1	protein-coding	5.878	1.208	0.958	3.380	3.138	1.526	3.394	6.932	2.758	3.089	1.081	0.719	5.678	7.226	6.142	7.544	7.773	5.181	0.711	0.689	0.677	1.117	0.565	0.370	6.290
4671	chr14	54839981	54856031	+	0	NA	Intergenic	Intergenic	12484	NM_183174	239099	Mm.280994	NM_183174	ENSMUSG00000057156	Homez	mKIAA1443	homeodomain leucine zipper-encoding gene	protein-coding	2.749	12.226	4.901	2.622	2.955	1.701	2.748	nan	2.411	3.140	3.012	2.502	2.306	3.475	2.987	2.595	1.419	2.510	0.833	1.066	0.924	1.081	0.488	0.375	2.464
6527	chr17	31430961	31446577	+	0	NA	intron (NM_008804, intron 4 of 18)	L1MD1|LINE|L1	52535	NM_001163748	18585	Mm.10812	NM_008804	ENSMUSG00000041119	Pde9a	PDE9A1	phosphodiesterase 9A	protein-coding	7.090	5.399	2.065	5.985	4.836	3.254	9.236	6.905	5.365	7.164	4.810	3.136	6.578	10.034	8.277	nan	6.797	7.607	3.872	2.144	2.416	4.262	2.808	2.906	12.137
5073	chr15	25703682	25705353	+	0	NA	intron (NM_019472, intron 3 of 40)	MLT1E2|LTR|ERVL-MaLR	81967	NM_019472	17909	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	3.519	1.678	0.869	4.392	2.395	1.099	3.750	2.140	3.013	3.496	1.244	1.046	4.522	4.977	4.283	4.654	3.707	3.631	3.052	2.516	2.067	4.027	1.646	2.095	4.279
11485	chr5	101102369	101104044	+	0	NA	Intergenic	Lx10|LINE|L1	256977	NM_172715	231510	Mm.271911	NM_172715	ENSMUSG00000029314	Agpat9	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|GPAT-3|Gpat3|mGPAT3	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding	3.614	6.544	2.470	3.909	2.814	2.813	3.740	3.952	3.021	4.020	2.915	1.608	4.049	5.016	5.333	6.045	4.697	3.540	4.666	2.511	2.859	3.076	3.951	5.193	5.413
5880	chr16	21255825	21257419	+	0	NA	promoter-TSS (NR_106145)	promoter-TSS (NR_106145)	-556	NR_106145	102465781		NR_106145	ENSMUSG00000098400	Mir7680	Gm27417|mmu-mir-7680	microRNA 7680	ncRNA	4.615	0.882	0.406	2.983	4.304	1.989	4.978	5.499	5.166	6.001	6.173	1.958	6.449	10.518	5.094	6.502	2.933	8.646	0.917	0.482	0.451	0.981	0.823	0.199	5.178
4519	chr14	21893260	21897169	+	0	NA	Intergenic	Intergenic	-46304	NM_026965	69156	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	4.713	3.208	1.119	5.261	2.452	1.131	3.689	5.947	4.025	4.875	2.072	1.352	3.711	5.848	5.580	6.667	3.591	6.161	2.179	1.250	0.878	nan	1.474	1.087	6.903
13405	chr7	91254130	91256394	+	0	NA	intron (NM_011807, intron 1 of 22)	intron (NM_011807, intron 1 of 22)	164476	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	3.213	0.783	0.739	2.001	2.006	1.808	2.657	4.428	nan	3.781	0.983	1.021	4.801	5.411	2.975	2.507	2.280	4.823	0.546	0.798	0.544	nan	0.580	0.860	1.931
4018	chr13	41461500	41463241	+	0	NA	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	24990	NM_001111324	18003	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	2.019	nan	1.856	2.111	2.429	1.092	2.069	1.861	nan	2.764	1.499	1.648	2.020	3.468	2.020	nan	0.811	nan	1.411	0.788	0.947	0.891	0.876	0.866	nan
1172	chr10	22494039	22496029	+	0	NA	Intergenic	B1_Mur1|SINE|Alu	92221	NR_028580	100038752	Mm.392859	NR_028580	ENSMUSG00000096937	Gm10825	ENSMUSG00000075295	predicted gene 10825	ncRNA	4.234	0.710	0.349	1.585	0.765	0.932	2.245	1.966	nan	1.151	1.779	2.097	2.661	nan	3.346	3.092	5.053	2.791	0.834	0.535	0.498	0.526	0.441	0.471	3.759
9760	chr3	121729209	121730029	+	0	NA	intron (NM_010171, intron 3 of 5)	intron (NM_010171, intron 3 of 5)	6082	NM_010171	14066	Mm.273188	NM_010171	ENSMUSG00000028128	F3	AA409063|CD142|Cf-3|Cf3|TF	coagulation factor III	protein-coding	2.238	0.973	0.131	2.898	2.338	1.827	2.627	1.243	2.364	2.694	0.434	0.649	4.262	4.138	3.164	4.280	3.586	4.253	0.435	0.995	0.577	0.698	nan	0.540	2.070
5598	chr15	96599464	96602189	+	0	NA	intron (NM_001166458, intron 4 of 15)	intron (NM_001166458, intron 4 of 15)	41136	NM_134086	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	2.368	1.799	1.204	1.378	1.640	1.091	12.368	10.876	2.727	3.274	9.502	2.562	7.104	6.676	8.470	5.594	4.155	2.963	0.517	0.462	0.288	0.422	0.324	0.213	3.175
4912	chr14	99946584	99949618	+	0	NA	intron (NM_010636, intron 4 of 6)	intron (NM_010636, intron 4 of 6)	201695	NM_010636	16597	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	6.185	nan	0.294	3.703	5.227	3.275	6.941	12.173	8.278	7.382	6.307	5.536	8.212	8.864	9.285	9.249	6.177	7.495	1.906	0.855	0.540	1.193	2.314	1.732	5.704
285	chr1	72645181	72646693	+	0	NA	intron (NM_001347063, intron 22 of 23)	BGLII|LTR|ERVK	54627	NM_176980	319695	Mm.249056	NM_176980	ENSMUSG00000039342	Ankar	4932422E22Rik	ankyrin and armadillo repeat containing	protein-coding	5.261	0.995	0.054	3.619	1.274	0.349	3.814	2.768	2.485	3.928	2.709	1.009	5.346	4.729	3.866	4.982	2.093	5.112	0.550	0.390	0.211	0.987	0.708	0.269	5.551
4397	chr13	110131889	110134310	+	0	NA	intron (NM_023852, intron 3 of 4)	L1Md_F2|LINE|L1	147107	NM_023852	67295	Mm.151600	NM_023852	ENSMUSG00000021700	Rab3c	2700062I01Rik|3110015B08Rik|3110037E15Rik|AI850886	RAB3C, member RAS oncogene family	protein-coding	3.832	nan	0.213	2.684	2.278	1.264	3.119	4.118	4.941	4.905	1.698	1.578	4.281	5.588	3.962	5.494	3.112	4.235	1.085	0.919	0.329	nan	0.776	0.485	2.379
2441	chr11	74189764	74194393	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-3427	NM_207622	404316	Mm.246537	NM_207622	ENSMUSG00000070378	Olfr403	IA7|MOR125-5_p|Olfr43	olfactory receptor 403	protein-coding	nan	1.105	1.343	0.407	0.537	0.425	nan	0.649	0.543	0.357	0.412	0.349	0.448	nan	nan	nan	0.624	nan	5.506	6.601	nan	13.564	5.393	3.809	1.100
9470	chr3	89253130	89266000	+	0	NA	Intergenic	Intergenic	-6896	NM_026767	68563	Mm.272927	NM_026767	ENSMUSG00000042737	Dpm3	1110001H19Rik|AV117483	dolichyl-phosphate mannosyltransferase polypeptide 3	protein-coding	5.151	1.826	1.130	5.686	7.518	5.429	6.730	4.918	7.268	12.164	2.372	1.587	6.583	12.527	5.186	nan	5.156	6.733	nan	2.742	2.241	3.889	6.073	5.289	5.062
5171	chr15	54366146	54367653	+	0	NA	Intergenic	Intergenic	-43875	NM_173422	239447	Mm.82400	NM_173422	ENSMUSG00000038591	Colec10	CL-L1	collectin sub-family member 10	protein-coding	4.179	0.527	0.735	1.188	1.570	1.242	nan	3.815	2.508	1.876	3.566	4.166	2.262	1.934	1.110	nan	2.837	1.172	4.106	5.460	3.683	4.183	5.509	4.454	1.356
7665	chr19	24719761	24722469	+	0	NA	intron (NM_175013, intron 9 of 10)	Lx9|LINE|L1	47107	NM_183160	226040	Mm.391170	NM_183160	ENSMUSG00000048572	Tmem252	E030010A14Rik	transmembrane protein 252	protein-coding	2.403	3.076	2.011	nan	2.299	1.838	5.010	nan	5.114	6.376	nan	0.765	3.327	4.882	2.279	2.702	1.254	3.858	nan	0.256	0.311	0.399	nan	0.281	1.843
2414	chr11	70820544	70822676	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-9049	NM_001045526	327957	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	5.265	1.604	0.348	3.185	2.501	0.976	6.781	5.846	2.472	2.738	1.016	0.702	6.768	6.009	4.647	5.498	5.783	5.202	1.086	0.872	0.368	0.533	nan	0.547	2.992
4657	chr14	51515347	51517837	+	0	NA	Intergenic	L1Md_T|LINE|L1	-36198	NM_001013816	434459	Mm.359230	NM_001013816	ENSMUSG00000079244	Gm5622	EG434459	predicted gene 5622	protein-coding	4.285	1.910	0.409	5.118	1.276	0.626	2.109	4.206	2.589	3.835	1.772	1.234	2.363	6.070	4.617	5.860	2.165	4.276	1.932	1.347	0.910	4.926	1.525	0.770	6.407
4423	chr13	113253377	113259726	+	0	NA	Intergenic	Intergenic	46892	NM_023612	71690	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	6.189	6.481	2.381	7.363	4.603	2.831	3.068	3.718	4.354	6.048	2.932	2.642	3.725	4.933	4.341	5.232	3.508	5.362	3.280	3.634	2.981	5.100	2.074	1.905	nan
2194	chr11	53568529	53572020	+	0	NA	intron (NM_001290805, intron 1 of 16)	intron (NM_001290805, intron 1 of 16)	2905	NM_001290806	16568	Mm.88694	NM_008443	ENSMUSG00000018395	Kif3a	Kif3|Kifl|Kns3	kinesin family member 3A	protein-coding	1.399	1.393	0.800	1.719	1.902	1.716	1.473	1.762	1.366	1.479	1.242	1.513	1.296	1.504	1.401	1.405	1.561	1.855	2.357	3.143	4.549	3.631	3.190	3.088	nan
2285	chr11	60742178	60756296	+	0	NA	exon (NM_009410, exon 13 of 19)	exon (NM_009410, exon 13 of 19)	20574	NR_039559	100628625		NR_039559	ENSMUSG00000092734	Mir5100	mir-5100|mmu-mir-5100|mu-mir-5100	microRNA 5100	ncRNA	4.730	4.034	1.364	5.531	3.307	1.963	5.006	5.933	3.113	3.996	3.396	1.998	4.285	6.455	5.716	6.446	3.364	5.429	nan	1.394	1.416	3.204	1.389	1.203	nan
8791	chr2	150430959	150435521	+	0	NA	intron (NM_001310645, intron 1 of 3)	L1_Mus3|LINE|L1	18261	NM_001310645	668923	Mm.393876	NM_001177550	ENSMUSG00000068130	Zfp442	OTTMUSG00000015730|ZIPO-II	zinc finger protein 442	protein-coding	4.785	3.428	1.981	3.042	2.465	1.852	3.293	3.895	3.000	3.449	1.730	1.085	6.470	5.591	3.708	4.530	6.249	4.737	nan	1.395	0.967	1.361	1.651	1.212	5.283
3092	chr11	119812894	119818360	+	0	NA	intron (NM_028898, intron 10 of 33)	intron (NM_028898, intron 10 of 33)	18738	NR_045313	319454	Mm.442144	NR_045312	ENSMUSG00000085081	Rptoros	A430071A18Rik	regulatory associated protein of MTOR, complex 1, opposite strand	ncRNA	6.644	3.455	1.356	9.049	7.130	3.822	5.711	4.400	5.260	5.724	4.986	2.765	4.336	7.668	6.416	6.794	3.841	8.385	1.849	nan	1.234	1.691	1.329	0.986	7.536
6425	chr17	26496254	26506301	+	0	NA	Intergenic	Intergenic	7195	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	1.201	0.995	0.547	1.796	0.898	0.502	2.329	1.124	1.055	1.359	0.745	0.606	1.515	2.025	2.430	nan	1.608	1.868	4.000	3.702	3.341	5.798	2.252	1.851	3.224
1135	chr10	19652829	19662575	+	0	NA	Intergenic	Intergenic	35674	NM_178258	237310	Mm.331979	NM_178258	ENSMUSG00000039760	Il22ra2	CRF2-10|CRF2-s1|CRF2X|Il-22bp	interleukin 22 receptor, alpha 2	protein-coding	6.940	5.354	2.030	5.716	3.095	1.552	2.884	6.538	5.317	7.814	3.175	3.911	4.558	6.714	6.140	6.997	5.492	6.463	2.735	2.015	1.799	3.651	1.957	2.301	8.879
14143	chr8	35674340	35681859	+	0	NA	3' UTR (NM_001081279, exon 3 of 3)	3' UTR (NM_001081279, exon 3 of 3)	-89079	NR_040376	100504714	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	1.673	1.573	0.774	0.890	0.863	0.660	1.856	3.807	1.645	1.342	1.799	1.059	1.451	2.159	2.414	2.439	1.169	1.680	2.606	2.751	1.810	6.105	1.586	0.949	nan
4198	chr13	60760456	60778722	+	0	NA	Intergenic	Lx6|LINE|L1	16775	NM_199148	218275	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	5.900	0.872	0.373	5.577	6.169	4.081	5.576	5.893	5.139	6.343	2.106	2.297	5.716	9.412	7.157	nan	2.959	8.942	1.113	1.097	0.918	0.979	1.278	1.011	7.323
96	chr1	36612396	36616883	+	0	NA	intron (NM_001126046, intron 6 of 14)	intron (NM_001126046, intron 6 of 14)	-21307	NM_027957	381337	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	11.349	5.863	1.554	11.042	3.180	1.679	8.669	8.220	3.725	9.260	6.677	3.635	8.084	9.008	8.660	14.764	7.455	8.134	6.454	2.832	4.130	8.627	4.081	4.823	16.644
6726	chr17	50226344	50239732	+	0	NA	Intergenic	L1M4|LINE|L1	-6170	NR_131975	446210	Mm.378184	NM_001004437	ENSMUSG00000067103	AY702103	STDP2	cDNA sequence AY702103	ncRNA	1.470	11.091	5.747	1.581	0.947	0.514	0.415	0.522	0.948	1.169	0.453	0.440	0.385	nan	0.767	1.016	nan	1.150	0.712	0.735	0.431	0.517	0.355	0.235	0.917
14381	chr8	83389853	83395549	+	0	NA	intron (NM_009904, intron 1 of 14)	RMER10A|LTR|ERVL	2859	NM_001329680	12745	Mm.358581	NM_009904	ENSMUSG00000002190	Clgn	4930459O04Rik|A2/6|AI528775|Cln	calmegin	protein-coding	6.429	1.045	0.527	4.401	5.184	2.354	4.935	6.611	nan	4.194	2.891	2.013	7.672	9.650	8.037	9.680	7.319	7.714	nan	1.304	0.945	2.856	1.378	0.930	8.111
12771	chr6	134515686	134517794	+	0	NA	intron (NM_008514, intron 3 of 22)	B3|SINE|B2	50173	NM_008514	16974	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	8.314	9.565	3.745	12.284	7.834	6.131	10.318	11.032	7.643	20.970	8.297	6.504	10.736	12.021	9.995	12.255	10.316	10.533	6.658	3.591	5.348	6.656	5.884	7.929	16.742
11681	chr5	123051022	123053956	+	0	NA	Intergenic	L1MB7|LINE|L1	-5473	NM_001347456	74890	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	5.344	1.005	0.932	2.761	2.194	1.967	5.726	4.370	3.096	nan	1.237	1.404	4.991	6.255	6.129	5.162	5.780	4.035	nan	0.974	1.319	1.123	nan	1.503	5.015
3836	chr13	9059919	9061160	+	0	NA	Intergenic	Intergenic	-33342	NM_001311117	217980	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	3.445	0.522	0.514	2.368	1.983	0.502	2.173	4.382	2.187	2.080	1.040	1.257	3.661	3.274	4.780	4.792	1.982	4.233	2.231	2.394	0.982	3.163	1.778	2.226	4.018
2114	chr11	44738758	44740388	+	0	NA	intron (NM_007897, intron 6 of 15)	intron (NM_007897, intron 6 of 15)	121473	NM_001290710	13591	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0.893	6.116	5.105	1.326	0.426	0.227	0.346	nan	0.998	0.506	0.388	0.186	0.375	0.791	0.476	nan	1.036	nan	nan	1.715	1.028	nan	nan	0.593	0.358
9908	chr4	8125139	8135422	+	0	NA	Intergenic	L1MA4|LINE|L1	108761	NM_007592	12319	Mm.119320	NM_007592	ENSMUSG00000041261	Car8	AW546993|Ca8|Cals|Cals1|Carp|wdl	carbonic anhydrase 8	protein-coding	5.045	0.567	0.365	2.876	3.288	1.913	5.378	5.945	2.920	3.110	2.025	2.006	5.749	5.227	4.867	4.814	3.789	4.585	3.913	nan	1.240	3.085	3.799	2.142	4.644
15189	chr9	63897215	63899148	+	0	NA	Intergenic	Intergenic	123878	NM_008542	17130	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	6.882	5.309	2.496	7.196	3.941	2.629	6.768	7.092	3.779	5.675	3.463	3.243	6.737	9.069	8.234	8.123	4.921	6.482	4.382	2.809	2.675	4.962	2.607	2.479	10.129
14576	chr8	109341429	109346378	+	0	NA	Intergenic	Lx10|LINE|L1	-2995	NR_002928	384864	Mm.390083	NR_002928		Gm1943	-	WD repeat domain 70 pseudogene	pseudo	1.074	3.011	1.886	0.682	0.440	0.273	1.381	1.875	1.068	1.131	8.142	3.664	2.020	1.682	1.206	1.034	1.016	1.210	2.585	1.517	1.348	4.729	0.648	0.711	1.030
9548	chr3	95861262	95862874	+	0	NA	TTS (NM_078479)	TTS (NM_078479)	-6186	NM_001316751	70767	Mm.279872	NM_027541	ENSMUSG00000015748	Prpf3	3632413F13Rik	pre-mRNA processing factor 3	protein-coding	6.776	11.760	4.906	8.842	2.869	1.051	4.588	3.752	5.625	5.118	5.438	4.021	5.887	6.158	7.626	7.678	3.419	9.124	4.714	2.909	1.016	4.305	2.501	1.189	8.110
12893	chr6	149208417	149212236	+	0	NA	Intergenic	RLTR14|LTR|ERV1	-21614	NM_001113424	232566	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	4.804	1.582	1.077	nan	6.784	4.058	3.930	nan	2.102	nan	3.036	1.839	5.290	8.392	3.095	4.745	3.670	3.782	0.570	nan	0.607	nan	0.528	0.582	2.332
13387	chr7	88009260	88012760	+	0	NA	intron (NM_001143834, intron 5 of 10)	L1Md_F2|LINE|L1	-267075	NM_009982	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	6.792	4.147	1.227	5.502	8.955	5.213	9.265	10.397	6.418	6.602	3.743	4.829	7.838	8.881	7.865	6.922	6.233	6.868	1.641	1.903	1.158	nan	1.799	1.420	6.782
15415	chr9	99254967	99257613	+	0	NA	intron (NM_023873, intron 3 of 17)	RLTR20C2_MM|LTR|ERVK	12822	NM_023873	68121	Mm.288739	NM_023873	ENSMUSG00000056267	Cep70	6720484E09Rik|Bite|C030018L16Rik	centrosomal protein 70	protein-coding	0.657	0.331	0.330	0.763	0.423		0.666	0.304	0.359	0.593	0.468	0.223	0.303	0.435	0.528	0.542	0.463	0.482	3.689	3.273	1.713	4.965	2.030	0.947	0.851
5930	chr16	24398607	24401346	+	0	NA	intron (NM_178665, intron 1 of 12)	intron (NM_178665, intron 1 of 12)	-6321	NR_037954	68841	Mm.361995	NR_037954		Lppos	1110054M08Rik|AI481106	LIM domain containing preferred translocation partner in lipoma, opposite strand	ncRNA	3.910	1.468	1.226	4.063	4.203	2.418	2.955	6.033	4.150	4.115	2.719	2.537	5.650	6.049	5.347	6.095	2.876	6.589	1.308	0.967	0.616	1.591	nan	1.228	5.310
1396	chr10	68736930	68739369	+	0	NA	intron (NM_177794, intron 1 of 5)	intron (NM_177794, intron 1 of 5)	14403	NM_177794	327766	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	2.640	0.909	0.346	3.096	3.895	2.448	2.177	1.199	2.617	2.979	0.483	0.723	1.782	4.577	3.963	4.078	1.952	3.666	0.960	0.686	0.851	0.609	0.949	0.662	3.127
12839	chr6	145053534	145056097	+	0	NA	intron (NM_007532, intron 1 of 10)	intron (NM_007532, intron 1 of 10)	-6003	NM_001024468	12035	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	nan	5.272	5.451	nan	0.608	0.445	1.056	nan	0.995	nan	0.378	0.251	nan	1.028	0.794	nan	0.954	1.157	0.777	nan	0.667	nan	0.586	0.561	nan
1760	chr10	116386081	116388176	+	0	NA	3' UTR (NM_029928, exon 32 of 32)	3' UTR (NM_029928, exon 32 of 32)	-30993	NR_028107	67342	Mm.245800	NM_026098	ENSMUSG00000020164	Kcnmb4os1	1700058G18Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 4, opposite strand 1	ncRNA	5.512	8.482	2.755	7.249	1.942	1.201	4.475	4.898	3.878	10.187	3.463	2.015	5.089	6.084	7.033	7.604	3.614	6.946	4.916	1.600	1.688	5.097	3.532	4.268	10.571
11336	chr5	73034529	73041003	+	0	NA	intron (NM_028194, intron 56 of 62)	L1Md_T|LINE|L1	30862	NM_173403	231290	Mm.491387	NM_173403	ENSMUSG00000029219	Slc10a4	E130304D01	solute carrier family 10 (sodium/bile acid cotransporter family), member 4	protein-coding	3.765	1.453	0.727	2.958	2.328	1.036	6.793	4.589	5.069	6.533	1.171	0.891	5.140	7.449	6.005	7.620	4.724	5.394	0.855	0.648	0.386	0.844	0.481	0.507	6.304
391	chr1	88364662	88370732	+	0	NA	intron (NM_134252, intron 22 of 26)	ORR1E|LTR|ERVL-MaLR	-39313	NM_029269	75396	Mm.173058	NM_029269	ENSMUSG00000026295	Spp2	0610038O04Rik|pp-24|spp24	secreted phosphoprotein 2	protein-coding	9.337	3.846	2.331	7.968	6.927	6.019	10.579	7.402	5.625	6.637	3.969	3.598	10.179	11.437	9.309	13.520	10.825	7.289	2.557	2.690	2.921	nan	2.267	2.445	10.204
2033	chr11	22740892	22765750	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	106414	NM_016888	53625	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	nan	nan	5.492	6.242	4.742	2.719	3.796	5.579	4.509	5.721	3.700	2.863	4.746	7.521	4.683	6.019	4.182	nan	2.076	2.757	2.188	3.366	2.014	1.656	5.070
10963	chr4	151594367	151605234	+	0	NA	intron (NM_001081557, intron 3 of 23)	B4|SINE|B4	261968	NM_001081557	100072	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	2.452	nan	0.617	2.929	1.350	0.804	1.359	3.390	2.162	3.278	1.381	0.661	4.573	4.535	3.181	4.843	3.213	2.221	1.604	1.049	0.709	2.709	0.601	0.550	9.859
10058	chr4	46648147	46649532	+	0	NA	intron (NM_198664, intron 1 of 12)	intron (NM_198664, intron 1 of 12)	1360	NM_198664	381605	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	3.769	0.819	0.383	1.650	3.335	2.108	1.360	4.303	3.385	4.344	2.580	2.451	2.028	3.222	3.513	3.858	1.612	3.866	0.821	0.761	0.708	2.153	0.411	0.251	4.886
15494	chr9	107937460	107938714	+	0	NA	intron (NM_145621, intron 1 of 10)	intron (NM_145621, intron 1 of 10)	2167	NM_145621	235604	Mm.274540	NM_145621	ENSMUSG00000032936	Camkv	1G5|BB074618|BC017634	CaM kinase-like vesicle-associated	protein-coding	3.563	6.527	3.611	2.788	2.150	0.587	2.340	3.491	1.464	1.821	3.171	2.295	3.001	3.079	1.990	2.165	2.470	3.071	1.416	1.167	0.519	0.795	1.004	0.674	4.242
8796	chr2	150735341	150736746	+	0	NA	Intergenic	Intergenic	-13038	NM_172117	12497	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	5.997	5.705	3.369	3.453	3.520	1.574	3.885	6.536	2.912	3.471	3.110	3.365	4.934	5.350	3.698	4.557	3.805	3.471	nan	2.782	3.931	3.387	2.799	3.764	4.735
13445	chr7	99785130	99786424	+	0	NA	Intergenic	L1MB4|LINE|L1	18613	NM_146356	258353	Mm.377450	NM_146356	ENSMUSG00000073997	Olfr521	MOR101-2	olfactory receptor 521	protein-coding	7.646	8.244	3.209	9.565	3.331	1.139	4.962	9.240	5.516	6.900	5.759	3.381	7.317	7.950	9.501	10.799	6.045	9.036	4.554	2.173	1.420	4.971	2.213	2.613	13.043
14646	chr8	119855794	119872743	+	0	NA	intron (NM_146219, intron 1 of 4)	BC1_Mm|scRNA|scRNA	1963	NM_146219	234796	Mm.86446	NM_146219	ENSMUSG00000031828	Klhl36	-	kelch-like 36	protein-coding	4.567	2.372	0.960	2.607	2.756	1.620	3.286	8.770	2.179	2.503	4.331	2.495	3.820	3.857	4.066	nan	2.737	3.522	1.447	1.391	1.068	2.159	1.254	1.123	3.350
2676	chr11	95084808	95086436	+	0	NA	Intergenic	Intergenic	-8811	NM_001306162	16400	Mm.57035	NM_013565	ENSMUSG00000001507	Itga3	AA407068|CD49C|GAPB3	integrin alpha 3	protein-coding	2.077	nan	0.113	0.664	0.411	0.105	2.850	0.982	0.283	0.702	0.802	0.127	1.737	1.480	3.417	4.622	3.337	1.802	0.542	nan	0.415	1.055	nan	nan	3.725
8455	chr2	92206138	92216286	+	0	NA	intron (NM_001109691, intron 2 of 18)	intron (NM_001109691, intron 2 of 18)	-10350	NM_001109690	192285	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	5.411	2.869	0.777	4.588	1.317	0.824	4.424	5.830	2.720	4.248	4.201	1.921	5.291	6.299	5.639	8.077	4.564	5.746	4.491	1.862	1.934	5.952	2.128	2.065	11.407
5821	chr16	15945559	15953154	+	0	NA	intron (NM_146068, intron 10 of 19)	intron (NM_146068, intron 10 of 19)	62070	NM_007679	12609	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	7.091	1.456	0.842	5.985	8.190	5.568	4.156	8.040	5.132	nan	3.008	3.199	5.156	5.339	3.560	nan	3.619	5.644	2.997	2.232	1.563	1.836	3.593	3.269	3.178
5596	chr15	96538414	96541534	+	0	NA	Intergenic	Intergenic	-79131	NM_028148	72193	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	8.657	10.045	3.583	6.684	3.628	1.846	8.486	11.288	5.216	8.945	5.607	3.361	10.740	9.538	9.348	8.666	7.793	7.295	3.409	1.638	1.828	4.416	2.434	1.860	9.901
180	chr1	53880110	53881903	+	0	NA	intron (NM_001001883, intron 17 of 28)	intron (NM_001001883, intron 17 of 28)	31582	NR_106149	102465783		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	9.757	7.545	3.452	5.546	3.809	2.082	4.094	7.293	5.298	5.081	4.750	3.037	5.482	5.752	6.380	7.943	5.929	5.582	1.177	1.887	1.297	1.066	0.506	0.377	4.818
1375	chr10	67109497	67111182	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-13351	NM_178606	28193	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	6.442	10.431	6.220	2.392	2.944	1.026	2.536	3.875	2.102	2.693	1.101	0.701	1.169	2.612	2.295	4.916	3.987	2.527	0.939	2.160	1.700	1.222	0.937	0.559	5.139
2907	chr11	106534867	106539450	+	0	NA	intron (NM_198292, intron 5 of 11)	PB1D7|SINE|Alu	36167	NR_030703	100216537		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	6.190	9.890	3.937	6.762	2.621	1.678	1.827	2.398	nan	3.730	3.182	1.865	1.763	2.666	3.287	3.652	2.205	4.359	5.062	5.700	4.218	nan	5.505	4.725	4.270
14557	chr8	108787400	108797623	+	0	NA	exon (NM_007496, exon 2 of 10)	exon (NM_007496, exon 2 of 10)	77867	NM_007496	11906	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.901	0.847	0.411	0.824	0.385	0.246	1.106	3.113	1.686	1.065	0.560	1.041	1.149	1.371	1.780	2.335	0.831	2.324	4.340	1.957	1.258	7.983	2.688	1.907	1.842
8581	chr2	119583372	119584193	+	0	NA	intron (NM_019769, intron 5 of 6)	PB1|SINE|Alu	-10514	NR_027832	66602	Mm.379181	NR_015473	ENSMUSG00000085438	1700020I14Rik	1190006L01Rik|4933437I03Rik|AI451541|AI585852|AW538376|AW558897|Cyrano	RIKEN cDNA 1700020I14 gene	ncRNA	2.005	5.581	1.732	3.624	1.899	1.127	2.151	3.970	3.418	8.015	0.477	2.228	2.253	1.610	3.553	6.027	3.028	4.033	4.529	1.733	5.512	6.415	5.986	9.409	7.020
10675	chr4	134087488	134091948	+	0	NA	intron (NM_001162970, intron 17 of 19)	intron (NM_001162970, intron 17 of 19)	5355	NM_013706	23833	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	7.730	4.438	1.327	8.550	3.008	1.598	5.763	6.683	nan	9.510	2.733	2.015	7.199	11.412	8.539	9.862	4.700	9.198	2.194	1.446	1.071	3.215	nan	1.927	14.931
4097	chr13	48557199	48559417	+	0	NA	Intergenic	B1_Mur1|SINE|Alu	-20036	NR_029725	387244		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	nan	0.815	0.768	nan	0.331	0.165	0.437	0.504	0.561	0.347	0.638	0.222	0.303	0.238	0.382	0.642	0.318	nan	4.454	3.589	3.603	2.911	5.343	5.240	nan
13143	chr7	46807779	46808850	+	0	NA	intron (NM_008186, intron 5 of 14)	B2_Mm1a|SINE|B2	11643	NM_001291075	14884	Mm.22700	NM_008186	ENSMUSG00000006599	Gtf2h1	62kDa|AW743425|AW822074|BTF2 p62|C77871|p62	general transcription factor II H, polypeptide 1	protein-coding	5.988	7.816	3.365	6.202	7.095	3.334	6.601	7.823	2.866	7.112	3.526	2.366	4.554	7.032	4.204	5.500	5.253	4.098	3.406	1.736	2.242	2.415	5.020	3.815	8.193
7914	chr19	60970310	60972304	+	0	NA	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	81558	NM_018869	14773	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	2.965	nan	1.954	4.572	3.889	2.210	1.018	1.867	2.872	2.692	1.043	0.666	1.107	2.428	1.776	1.917	1.672	2.706	1.460	1.027	0.862	2.052	1.632	1.376	1.860
10495	chr4	123270188	123272503	+	0	NA	Intergenic	B3|SINE|B2	-11566	NM_130881	230721	Mm.277091	NM_130881	ENSMUSG00000011257	Pabpc4	-	poly(A) binding protein, cytoplasmic 4	protein-coding	3.261	1.924	1.014	4.239	2.540	1.107	1.227	1.352	2.401	2.278	2.081	1.092	1.246	2.707	1.802	2.454	0.923	4.111	0.932	1.351	0.809	1.176	0.928	0.431	2.399
8090	chr2	30544945	30551652	+	0	NA	Intergenic	RSINE1|SINE|B4	-46746	NM_030137	78617	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	4.488	3.992	1.424	6.927	4.447	3.328	4.682	6.951	3.086	4.175	3.294	1.833	2.710	3.666	4.010	3.752	2.676	4.074	4.807	3.575	4.471	5.963	4.172	3.927	4.841
8273	chr2	59817417	59818609	+	0	NA	intron (NM_198294, intron 18 of 26)	intron (NM_198294, intron 18 of 26)	64593	NM_001159636	72137	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	4.657	1.053	0.439	2.744	1.980	1.448	2.290	3.638	3.195	3.239	1.981	0.857	3.892	4.072	2.384	3.396	3.876	2.741	1.065	1.007	1.131	0.633	1.227	0.932	2.497
11254	chr5	64208551	64226137	+	0	NA	intron (NM_001310611, intron 2 of 21)	intron (NM_001310611, intron 2 of 21)	-13013	NM_001289514	57915	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	7.271	1.208	0.887	3.874	4.855	2.406	6.873	6.344	5.667	5.703	4.018	3.693	7.627	7.804	6.623	7.412	6.727	6.674	4.008	2.435	1.756	nan	3.938	2.605	5.736
4102	chr13	48946334	48949961	+	0	NA	intron (NM_001033268, intron 2 of 17)	ID_B1|SINE|B4	19681	NM_001033268	218236	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	nan	1.091	0.441	nan	2.195	1.570	3.081	2.880	2.619	3.128	0.676	1.076	2.803	5.980	4.533	4.302	2.120	nan	3.320	nan	1.176	2.648	1.887	1.067	nan
11496	chr5	103886973	103888972	+	0	NA	intron (NM_178741, intron 1 of 9)	intron (NM_178741, intron 1 of 9)	23257	NM_178741	246293	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding	2.756	0.655	0.211	2.552	0.991	1.186	nan	4.148	2.259	2.206	3.285	2.430	2.459	4.069	5.269	2.568	2.791	2.910	nan	0.546	0.073	0.576	0.807	0.509	2.376
4323	chr13	99683469	99686640	+	0	NA	Intergenic	Intergenic	-168452	NM_008634	17755	Mm.4173	NM_008634	ENSMUSG00000052727	Map1b	A230055D22|AI843217|LC1|MAP5|Mtap-5|Mtap1b|Mtap5	microtubule-associated protein 1B	protein-coding	4.297	0.761	0.900	2.629	4.196	2.518	2.713	2.413	3.513	3.912	1.631	1.874	3.028	4.834	2.603	3.072	nan	3.708	3.033	2.733	1.334	2.159	3.729	2.139	3.267
9628	chr3	103603954	103607434	+	0	NA	intron (NM_001276681, intron 3 of 7)	MIR|SINE|MIR	29568	NM_001276681	54524	Mm.88818	NM_018800	ENSMUSG00000027849	Syt6	3110037A08Rik|AW048930|sytVI	synaptotagmin VI	protein-coding	9.013	4.793	2.357	6.502	5.047	3.031	7.460	7.114	5.382	6.147	6.494	2.674	6.446	9.025	6.968	7.117	5.892	7.768	4.637	2.637	2.036	4.737	3.217	2.241	8.279
12904	chr7	4612993	4616886	+	0	NA	Intergenic	Intergenic	-10898	NM_207270	545902	Mm.188925	NM_207270	ENSMUSG00000035429	Ptprh	R-PTP-H|sap-1	protein tyrosine phosphatase, receptor type, H	protein-coding	1.613	2.672	1.558	0.898	1.069	1.079	3.957	1.104	0.823	0.859	0.506	0.415	0.846	1.908	1.364	1.240	1.364	1.061	5.065	3.361	3.338	2.973	5.202	4.910	1.856
8264	chr2	59283491	59285625	+	0	NA	intron (NM_175464, intron 3 of 20)	intron (NM_175464, intron 3 of 20)	102124	NR_040510	76676	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	1.135	0.609	0.640	0.283	0.232	0.303	0.373	nan	0.810	0.538	6.854	3.345	0.234	0.404	0.512	0.736	1.020	0.830	1.322	0.778	1.122	0.798	0.547	1.256	0.549
11343	chr5	73234616	73245032	+	0	NA	intron (NM_028194, intron 1 of 62)	intron (NM_028194, intron 1 of 62)	16794	NM_028194	72313	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	2.676	9.839	7.153	1.424	2.475	1.366	1.968	2.340	1.632	1.662	1.795	1.683	0.961	2.323	1.331	nan	1.420	nan	0.822	1.824	1.057	0.800	1.039	0.677	1.253
6688	chr17	47276957	47279574	+	0	NA	intron (NM_001097623, intron 4 of 19)	B1_Mus1|SINE|Alu	48035	NM_172622	224829	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	8.057	12.068	7.195	6.053	2.361	1.180	10.633	5.306	2.809	4.186	4.246	4.019	4.293	6.181	5.180	4.189	6.554	2.167	7.400	5.974	4.261	7.356	6.671	7.698	5.543
4661	chr14	52512168	52515090	+	0	NA	Intergenic	L1Md_T|LINE|L1	-17934	NM_001170918	57269	Mm.88822	NM_020512	ENSMUSG00000059887	Olfr1507	MOR244-1|Mor28|Or28	olfactory receptor 1507	protein-coding	4.527	1.178	0.461	2.191	2.063	1.101	3.346	5.043	2.184	2.849	0.748	0.478	4.217	4.854	3.532	4.701	3.374	3.497	0.677	0.628	0.336	0.598	0.322	0.329	6.011
1653	chr10	95324469	95328592	+	0	NA	Intergenic	BGLII|LTR|ERVK	-2393	NM_009950	12905	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	6.722	1.075	0.894	2.922	8.077	5.752	5.786	7.859	4.665	5.277	7.995	3.826	5.918	7.621	5.170	5.784	4.345	5.496	nan	0.453	0.733	nan	0.764	0.538	3.259
9312	chr3	52820109	52821501	+	0	NA	Intergenic	Intergenic	81081	NR_038079	329639	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	5.458	6.127	3.436	6.138	3.863	2.789	7.630	4.325	4.210	4.698	4.205	2.275	5.627	6.123	6.376	7.372	6.253	5.751	3.890	2.242	3.405	4.057	3.676	3.409	7.872
1688	chr10	98902449	98905309	+	0	NA	Intergenic	MTC|LTR|ERVL-MaLR	-11273	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	8.762	1.107	0.910	3.960	3.040	0.989	4.786	4.629	4.289	5.696	nan	1.275	5.801	6.880	5.859	7.090	5.104	6.035	nan	1.454	1.070	4.210	1.438	0.927	5.125
8085	chr2	30247394	30252810	+	0	NA	intron (NM_177725, intron 2 of 3)	B3|SINE|B2	12333	NM_177725	241296	Mm.389232	NM_177725	ENSMUSG00000007476	Lrrc8a	Lrrc8|mKIAA1437	leucine rich repeat containing 8A	protein-coding	6.173	3.088	0.693	5.440	1.552	1.063	4.255	7.609	nan	7.120	2.630	1.425	5.753	5.412	5.280	9.334	4.466	7.905	1.349	0.672	0.949	2.364	0.740	0.957	11.904
8540	chr2	117567573	117575595	+	0	NA	Intergenic	Intergenic	-228707	NM_011246	19419	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp	RAS guanyl releasing protein 1	protein-coding	3.620	0.609	0.354	2.716	2.115	0.802	4.611	2.778	2.701	2.921	2.039	1.417	nan	4.910	4.968	5.375	4.668	5.398	0.963	0.609	0.302	0.724	0.500	0.234	nan
10553	chr4	128670082	128678872	+	0	NA	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	-14261	NM_018774	54383	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic-like 2 (Drosophila)	protein-coding	1.803	3.682	1.669	2.637	2.541	1.302	1.818	1.401	1.341	1.700	1.671	1.173	1.430	2.129	nan	2.359	1.398	2.208	3.804	1.800	1.267	6.296	3.619	2.377	2.968
7481	chr19	4502760	4509409	+	0	NA	Intergenic	MLTR18D_MM|LTR|ERVK	-4388	NM_001162946	18563	Mm.1845	NM_008797	ENSMUSG00000024892	Pcx	Pc|Pcb	pyruvate carboxylase	protein-coding	3.967	0.573	0.389	3.056	2.706	1.778	4.289	6.707	4.554	3.933	4.728	3.753	3.664	4.756	3.107	3.661	6.067	3.570	0.465	0.529	0.767	0.498	0.563	0.588	5.355
3311	chr12	41550479	41552304	+	0	NA	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	-65334	NM_010733	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	4.676	nan	0.633	1.964	0.897	0.339	1.844	1.166	1.685	1.576	0.685	0.215	2.706	3.500	1.686	2.799	2.783	2.822	nan	0.901	0.183	0.562	0.585	0.512	3.696
13673	chr7	123644947	123650583	+	0	NA	Intergenic	Intergenic	-147316	NM_001081329	210162	Mm.135397	NM_175435	ENSMUSG00000030757	Zkscan2	9430065N20Rik|AW493225|Zfp694	zinc finger with KRAB and SCAN domains 2	protein-coding	4.399	1.670	0.777	3.533	2.920	1.349	4.280	7.646	2.927	3.896	1.862	1.768	6.700	6.506	nan	6.393	5.247	4.696	2.208	1.455	0.749	1.756	1.731	1.086	4.879
14918	chr9	22207922	22210814	+	0	NA	intron (NR_027981, intron 1 of 1)	MMERVK9E_I-int|LTR|ERVK	4492	NR_027981	69862	Mm.488068	NM_001033151	ENSMUSG00000090925	1810064F22Rik	-	RIKEN cDNA 1810064F22 gene	ncRNA	3.969	0.590	0.474	2.368	3.809	3.214	3.051	4.076	4.510	4.574	2.995	2.856	5.073	5.769	3.676	3.737	3.869	3.731	1.020	1.351	1.410	1.161	0.667	1.235	3.411
1458	chr10	76989404	76993749	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-20419	NR_045882	100038479	Mm.387034	NR_045882	ENSMUSG00000074919	Gm10787	ENSMUSG00000074919	predicted gene 10787	ncRNA	2.799	11.767	8.229	nan	1.571	0.967	1.055	0.764	0.876	1.486	1.772	0.974	0.497	1.226	nan	1.364	1.416	1.324	nan	1.569	1.261	0.572	0.680	0.588	1.852
2958	chr11	113181906	113187340	+	0	NA	intron (NR_015556, intron 1 of 2)	intron (NR_015556, intron 1 of 2)	17215	NR_015556	72386	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	0.617	nan	0.671	0.331	0.278	0.069	nan	nan	0.398	nan	0.452	0.549	0.427	0.450	0.490	0.637	0.486	nan	7.136	nan	4.747	5.717	7.970	6.714	0.898
15431	chr9	101171308	101176528	+	0	NA	intron (NM_001161362, intron 6 of 13)	RLTR31D_MM|LTR|ERVK	25155	NM_172144	235542	Mm.335386	NM_172144	ENSMUSG00000043154	Ppp2r3a	3222402P14Rik|A730042E07	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding	5.002	0.594	0.447	0.724	0.109	0.070	3.021	4.755	6.187	5.158	7.259	4.483	1.880	4.628	2.440	4.224	1.854	3.990	0.538	0.472	0.352	0.411	0.438	0.292	4.212
7953	chr2	6296362	6302275	+	0	NA	intron (NR_040333, intron 4 of 6)	L1MB7|LINE|L1	-23439	NM_001080548	98910	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	nan	8.799	5.187	3.486	3.516	1.677	3.498	8.326	3.856	2.972	2.927	2.360	4.633	4.787	5.281	7.624	5.154	5.702	4.363	2.810	1.566	4.625	2.737	1.715	4.801
1336	chr10	59809391	59817034	+	0	NA	intron (NM_001291443, intron 9 of 12)	intron (NM_001291443, intron 9 of 12)	-66379	NM_019965	56709	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	4.895	8.461	2.262	6.380	2.250	1.085	2.141	1.982	2.843	3.159	2.403	1.231	1.556	2.667	2.847	3.154	1.570	3.552	nan	3.120	2.392	6.478	3.578	2.363	4.374
7278	chr18	60390824	60394186	+	0	NA	3' UTR (NM_001146275, exon 3 of 3)	3' UTR (NM_001146275, exon 3 of 3)	16476	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	5.482	nan	0.737	nan	3.846	3.334	4.341	6.967	3.097	2.600	0.660	0.937	nan	1.917	1.618	1.707	1.670	nan	nan	0.513	0.720	nan	0.777	0.579	nan
3260	chr12	31758325	31762464	+	0	NA	intron (NM_001163126, intron 6 of 22)	intron (NM_001163126, intron 6 of 22)	-46468	NM_175191	73010	Mm.441517	NM_175191	ENSMUSG00000044067	Gpr22	2900068K05Rik|AW061316	G protein-coupled receptor 22	protein-coding	4.231	0.693	0.409	2.549	0.801	0.853	5.095	6.352	2.873	2.491	5.604	5.535	5.357	3.180	5.228	6.676	3.641	4.974	2.862	1.006	0.598	1.492	1.912	1.912	6.512
15336	chr9	77959359	77975327	+	0	NA	intron (NM_134255, intron 3 of 7)	intron (NM_134255, intron 3 of 7)	49978	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	6.217	1.397	0.590	6.179	3.486	2.067	5.058	7.985	6.805	7.085	3.357	3.341	7.783	9.305	6.700	8.176	4.492	8.944	1.263	nan	0.887	1.226	1.179	1.025	7.099
8328	chr2	70170022	70176590	+	0	NA	intron (NM_177376, intron 8 of 34)	MIRc|SINE|MIR	134180	NM_177376	329421	Mm.99648	NM_177376	ENSMUSG00000042064	Myo3b	A430065P19Rik	myosin IIIB	protein-coding	5.746	0.952	0.434	2.984	1.750	0.810	5.076	3.520	2.332	2.575	0.485	0.491	6.133	3.889	5.452	8.865	7.521	4.684	1.285	0.668	0.736	1.661	1.255	0.734	9.163
6221	chr16	92679673	92680965	+	0	NA	intron (NM_001111023, intron 2 of 5)	intron (NM_001111023, intron 2 of 5)	17010	NM_001111023	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	1.818	nan	0.732	2.385	1.105	0.535	2.225	1.923	2.887	2.354	4.572	3.083	2.878	4.178	3.707	3.205	2.157	nan	0.919	0.381	0.162	nan	0.536	0.400	3.825
14962	chr9	35228471	35229739	+	0	NA	intron (NM_194257, intron 3 of 7)	intron (NM_194257, intron 3 of 7)	17902	NM_026130	67398	Mm.284688	NM_026130	ENSMUSG00000032042	Srpr	1300011P19Rik|D11Mgi27|Srpra	signal recognition particle receptor ('docking protein')	protein-coding	4.407	9.799	1.933	6.420	2.352	1.252	4.444	4.452	3.496	11.987	3.914	2.889	2.635	4.753	5.053	5.299	nan	6.546	nan	1.277	4.199	6.082	3.721	6.526	12.278
3036	chr11	117395516	117399562	+	0	NA	Intergenic	Intergenic	-16850	NR_132097	105827746	Mm.388009	NR_132097	ENSMUSG00000086588	Gm11729	OTTMUSG00000003784	predicted gene 11729	ncRNA	2.965	nan	0.489	3.782	4.044	2.027	nan	3.003	2.936	3.873	2.711	2.107	2.461	3.919	2.881	3.394	1.265	3.498	5.477	nan	2.475	6.256	4.756	3.355	2.860
11903	chr5	141264935	141269957	+	0	NA	intron (NM_177879, intron 1 of 44)	intron (NM_177879, intron 1 of 44)	25912	NM_177879	330222	Mm.151931	NM_177879	ENSMUSG00000039683	Sdk1	5330440E10|6720466O15Rik	sidekick cell adhesion molecule 1	protein-coding	7.315	2.087	1.164	4.482	3.580	1.868	6.634	4.078	3.465	3.764	3.065	2.337	4.319	5.480	4.607	4.475	3.069	4.527	4.890	3.701	2.754	5.052	nan	3.524	5.149
7364	chr18	69594250	69597188	+	0	NA	intron (NM_013685, intron 8 of 19)	intron (NM_013685, intron 8 of 19)	249998	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	4.039	0.897	0.735	4.078	2.758	2.018	1.193	1.385	2.405	2.490	2.597	2.370	1.195	1.945	1.449	2.426	1.534	2.470	1.948	2.071	1.051	2.014	2.038	1.008	1.683
4137	chr13	52850614	52852724	+	0	NA	intron (NM_016709, intron 6 of 9)	intron (NM_016709, intron 6 of 9)	78008	NM_016709	11992	Mm.252034	NM_016709	ENSMUSG00000021460	Auh	C77140|W91705	AU RNA binding protein/enoyl-coenzyme A hydratase	protein-coding	nan	0.770	0.497	2.266	1.153	0.235	2.376	2.346	2.190	4.003	0.819	0.466	2.704	4.238	4.472	3.827	1.375	3.563	0.485	nan	0.098	1.092	0.321	0.119	3.646
8588	chr2	119927631	119932226	+	0	NA	intron (NM_001164274, intron 9 of 22)	intron (NM_001164274, intron 9 of 22)	32700	NM_013720	29808	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	4.093	1.835	0.857	4.889	2.425	1.389	3.197	3.081	3.430	2.886	2.254	1.764	5.315	4.906	4.445	5.702	4.855	5.916	0.853	1.010	0.662	1.007	0.837	0.419	4.639
6140	chr16	57567709	57572590	+	0	NA	exon (NM_001040397, exon 5 of 5)	exon (NM_001040397, exon 5 of 5)	20907	NM_001177871	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	3.936	2.044	0.951	4.257	5.103	3.454	1.779	2.525	3.680	2.974	2.571	1.174	2.954	3.035	3.048	3.882	2.690	4.931	nan	1.236	1.211	1.110	1.897	1.716	1.955
13033	chr7	26660916	26665422	+	0	NA	Intergenic	Intergenic	23261	NM_001081148	243881	Mm.294678	NM_001081148	ENSMUSG00000040650	Cyp2b23	EG243881	cytochrome P450, family 2, subfamily b, polypeptide 23	protein-coding	3.703	0.570	0.697	4.520	6.539	4.058	2.192	2.980	4.215	3.879	5.184	3.984	2.350	2.904	1.329	2.219	1.606	2.856	0.520	0.539	0.774	0.294	0.810	0.671	2.153
7405	chr18	76226123	76227650	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-14815	NM_010754	17126	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	2.768	nan	0.805	1.252	1.889	1.327	1.882	4.765	1.344	nan	0.783	0.932	2.180	4.584	2.145	1.960	1.699	1.244	1.593	nan	0.645	1.279	0.985	0.820	2.232
13270	chr7	73419956	73426210	+	0	NA	Intergenic	RMER19B|LTR|ERVK	-47309	NR_040324	319783	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	3.936	0.635	0.232	nan	4.114	1.485	5.479	5.797	5.039	7.115	0.878	0.961	4.534	6.957	5.804	nan	3.428	5.536	1.798	0.704	0.732	2.535	0.725	0.596	nan
4806	chr14	68502253	68507090	+	0	NA	exon (NM_007402, exon 20 of 23)	exon (NM_007402, exon 20 of 23)	29018	NM_007402	11500	Mm.261495	NM_007402	ENSMUSG00000022056	Adam7	ADAM 7|EAP1|EAPI	a disintegrin and metallopeptidase domain 7	protein-coding	5.604	1.514	1.084	3.047	3.107	1.821	4.909	6.695	3.609	3.556	2.210	1.265	4.203	5.392	4.501	4.996	3.533	4.382	1.236	nan	0.943	0.790	1.306	0.805	4.648
13407	chr7	91264665	91271610	+	0	NA	intron (NM_011807, intron 1 of 22)	intron (NM_011807, intron 1 of 22)	177351	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	4.564	4.423	2.337	4.269	4.635	2.387	3.636	7.099	4.256	3.787	3.429	2.660	4.641	5.973	4.299	3.791	nan	6.324	1.963	1.638	0.791	nan	1.879	0.777	3.991
8325	chr2	69507962	69512005	+	0	NA	intron (NM_001081088, intron 21 of 78)	intron (NM_001081088, intron 21 of 78)	76084	NM_001081088	14725	Mm.23847	NM_001081088	ENSMUSG00000027070	Lrp2	AI315343|AW536255|D230004K18Rik|Gp330|Megalin|b2b1625.2Clo	low density lipoprotein receptor-related protein 2	protein-coding	1.220	0.742	0.479	0.774	0.485	0.247	1.440	2.590	1.018	0.730	0.455	0.453	2.835	1.389	2.299	4.789	2.214	2.271	10.532	2.439	1.174	4.714	2.316	1.308	1.765
3413	chr12	72558073	72559890	+	0	NA	intron (NM_026327, intron 6 of 10)	MERVL-int|LTR|ERVL	22624	NM_026327	67708	Mm.11233	NM_026327	ENSMUSG00000034501	Pcnx4	1810048J11Rik|4932413O10|AU017192|Pcnxl4	pecanex homolog 4	protein-coding	2.159	0.772	0.360	0.540	0.271		0.931	0.545	0.924	0.800	0.371	0.225	2.386	1.230	2.161	2.956	2.057	1.567	0.597	0.468	0.202	0.940	0.291	0.104	6.894
6385	chr17	24133692	24136891	+	0	NA	intron (NM_001286662, intron 1 of 13)	intron (NM_001286662, intron 1 of 13)	6303	NM_011062	18607	Mm.10504	NM_011062	ENSMUSG00000024122	Pdpk1	Pdk1	3-phosphoinositide dependent protein kinase 1	protein-coding	2.416	0.757	0.456	1.488	5.370	2.763	8.831	6.080	2.197	2.757	6.711	3.671	3.281	5.144	3.527	nan	3.131	2.035	0.891	0.520	0.536	0.578	0.502	0.627	2.410
14247	chr8	63725533	63727698	+	0	NA	Intergenic	Intergenic	225555	NM_001195687	244495	Mm.485331	NM_001195687	ENSMUSG00000094443	Sgol2b	EG244495|Gm4975|Sgo2B	shugoshin like 2b (S. pombe)	protein-coding	5.019	1.063	0.144	3.347	3.222	1.506	3.493	6.473	3.912	3.484	3.807	2.895	5.498	4.780	5.460	6.491	3.768	6.199	nan	0.486	0.414	1.618	0.925	0.615	6.192
875	chr1	173151204	173154225	+	0	NA	Intergenic	Intergenic	-21499	NM_146764	258759	Mm.389211	NM_146764	ENSMUSG00000062527	Olfr1408	MOR267-4	olfactory receptor 1408	protein-coding	4.116	3.182	1.852	2.428	2.838	1.038	2.943	2.604	2.088	3.266	2.076	1.090	2.710	4.328	3.634	5.537	3.683	2.845	1.573	1.659	0.739	1.380	1.915	1.211	4.380
9990	chr4	40719736	40721478	+	0	NA	non-coding (NR_077226, exon 3 of 3)	non-coding (NR_077226, exon 3 of 3)	1710	NR_077221	622208	Mm.471544	NR_077221		Gm6297	-	predicted gene 6297	ncRNA	3.993	2.452	2.004	2.252	1.914	1.293	3.307	4.033	2.566	2.925	5.113	2.527	2.492	4.350	2.650	nan	3.107	nan	2.354	1.431	1.186	1.114	1.744	1.317	2.139
15379	chr9	89948539	89969450	+	0	NA	intron (NM_011245, intron 5 of 26)	intron (NM_011245, intron 5 of 26)	49219	NM_001039655	19417	Mm.44561	NM_011245	ENSMUSG00000032356	Rasgrf1	AI844718|CDC25|CDC25Mm|Gnrp|Grf1|Grfbeta|P190-A|Ras-GRF1|p190|p190RhoGEF	RAS protein-specific guanine nucleotide-releasing factor 1	protein-coding	5.994	5.799	3.470	4.171	4.229	2.671	6.303	7.149	6.262	7.448	2.903	1.935	5.339	9.046	7.447	7.003	4.156	8.183	0.640	1.145	0.904	0.547	0.471	0.527	7.863
8255	chr2	58417512	58421949	+	0	NA	Intergenic	Intergenic	-61972	NM_001111030	269275	Mm.77751	NM_001033369	ENSMUSG00000026834	Acvr1c	ACTR-IC|ACVRLK7|ALK7|Alk-7|C230097P10	activin A receptor, type IC	protein-coding	5.491	3.102	1.096	6.462	3.577	2.459	6.401	9.614	3.984	11.084	5.629	2.719	7.986	8.301	6.852	8.762	7.258	6.279	6.660	3.060	4.139	6.414	4.748	6.646	11.167
1580	chr10	87969972	87971231	+	0	NA	Intergenic	Intergenic	3930	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	3.604	0.392	0.270	1.769	1.274	0.590	0.809	2.235	1.985	2.704	0.685	0.788	1.725	3.962	2.188	2.388	3.535	nan	0.278	0.883	0.584	nan	nan	0.227	1.923
10341	chr4	106511668	106512991	+	0	NA	Intergenic	RLTR11A2|LTR|ERVK	-20086	NM_080458	140475	Mm.135448	NM_080458	ENSMUSG00000025418	Bsnd	-	Bartter syndrome, infantile, with sensorineural deafness (Barttin)	protein-coding	10.125	11.893	4.052	10.841	4.374	2.942	10.700	9.446	4.911	12.063	8.927	5.428	9.331	12.643	8.621	11.012	6.592	9.089	7.989	3.699	6.032	8.557	3.655	5.705	21.009
3274	chr12	33904603	33906761	+	0	NA	Intergenic	Intergenic	-22743	NM_033522	114712	Mm.204643	NM_033522	ENSMUSG00000046518	Ferd3l	Mnato3|N-twist|Nato|Nato3|Ntwist|Ptfb|bHLHa31|fer3	Fer3-like (Drosophila)	protein-coding	4.507	3.825	1.514	1.838	2.566	1.766	5.014	2.565	3.025	2.414	3.461	1.542	4.450	4.620	4.034	5.851	3.925	4.136	nan	0.744	1.022	1.732	0.780	1.230	7.909
2146	chr11	49838461	49839942	+	0	NA	TTS (NM_013529)	TTS (NM_013529)	-7550	NM_001163671	26420	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	5.345	10.580	1.705	10.279	3.628	2.775	4.713	4.040	5.421	15.311	7.101	3.543	4.829	6.137	7.295	7.521	2.038	7.144	4.861	2.136	2.466	6.671	nan	4.838	12.266
2419	chr11	72218874	72227083	+	0	NA	Intergenic	Intergenic	-7386	NM_026068	67279	Mm.159496	NM_026068	ENSMUSG00000020801	Med31	3110004H13Rik|CGI-125|l11Jus15	mediator complex subunit 31	protein-coding	3.777	0.565	0.201	3.395	2.700	1.698	3.525	4.961	1.968	3.619	0.652	1.047	2.846	4.713	4.012	5.479	3.221	2.418	0.865	0.888	0.812	1.300	nan	0.497	4.639
9077	chr2	173900292	173913623	+	0	NA	Intergenic	Lx2|LINE|L1	169386	NM_019806	56491	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	2.602	2.906	1.849	2.424	1.304	0.771	2.646	2.510	1.946	1.926	1.587	1.323	2.004	2.507	2.560	nan	2.581	nan	7.530	2.354	1.512	4.645	2.782	2.286	nan
5541	chr15	85863108	85867279	+	0	NA	intron (NM_001168672, intron 5 of 11)	RMER13B|LTR|ERVK	5247	NM_013882	29870	Mm.20858	NM_013882	ENSMUSG00000022385	Gtse1	B99|Gtse-1	G two S phase expressed protein 1	protein-coding	4.597	4.148	0.817	5.397	1.836	1.510	6.389	11.071	nan	7.904	3.798	2.644	9.318	7.728	nan	7.910	6.144	nan	nan	1.308	1.408	nan	3.946	3.643	11.567
14355	chr8	77678133	77679333	+	0	NA	intron (NM_010332, intron 3 of 7)	intron (NM_010332, intron 3 of 7)	45719	NM_010332	13617	Mm.283168	NM_010332	ENSMUSG00000031616	Ednra	ET-AR|ETa|Gpcr10	endothelin receptor type A	protein-coding	2.735	nan	0.588	0.600	0.571	0.148	1.295	5.376	nan	1.387	0.281	0.277	2.772	4.436	5.126	3.853	2.139	1.892	1.143	0.491	0.684	nan	1.795	1.073	2.802
11087	chr5	28492296	28494043	+	0	NA	intron (NR_015562, intron 1 of 6)	intron (NR_015562, intron 1 of 6)	-26068	NM_009170	20423	Mm.57202	NM_009170	ENSMUSG00000002633	Shh	9530036O11Rik|Dsh|Hhg1|Hx|Hxl3|M100081	sonic hedgehog	protein-coding	0.249	0.584	0.226	nan	0.092	0.072	0.344	0.186	0.224	0.673	0.099	0.056	0.079	0.119	0.400	0.459	0.328	0.467	3.789	0.461	1.300	5.052	2.292	5.435	0.726
11320	chr5	67237655	67242531	+	0	NA	Intergenic	Intergenic	-20472	NM_001285452	67878	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	1.901	0.558	0.481	2.041	1.918	1.033	0.818	0.432	1.541	1.000	0.475	0.598	0.486	0.769	0.667	1.348	0.982	1.689	2.605	2.490	1.968	nan	2.921	2.171	1.001
5544	chr15	85919737	85927712	+	0	NA	intron (NM_009886, intron 20 of 34)	intron (NM_009886, intron 20 of 34)	44397	NM_028063	72026	Mm.158211	NM_028063	ENSMUSG00000022386	Trmu	1110005N20Rik|1600025P05Rik|AI314320|Trmt1	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	protein-coding	nan	8.269	3.569	2.759	1.295	0.584	3.584	nan	nan	2.363	2.841	1.423	4.386	2.769	nan	nan	nan	nan	nan	0.989	0.648	nan	0.966	0.771	nan
8909	chr2	158497950	158509301	+	0	NA	intron (NM_145635, intron 1 of 2)	URR1A|DNA|hAT-Charlie	1013	NM_145635	246747	Mm.28800	NM_145635	ENSMUSG00000044405	Adig	SMAF-1|Smaf1	adipogenin	protein-coding	nan	10.678	5.257	2.654	1.252	0.466	1.598	0.675	nan	nan	0.587	0.425	nan	nan	1.246	2.309	1.895	nan	nan	0.871	0.770	0.893	0.437	0.488	nan
14530	chr8	108027875	108029241	+	0	NA	Intergenic	Intergenic	-440076	NM_010817	17463	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	7.284	1.149	1.041	5.939	4.521	2.080	2.998	5.055	3.565	3.867	2.292	1.143	1.861	4.353	3.023	3.729	2.673	4.509	0.974	1.700	0.772	nan	1.269	1.174	3.806
5742	chr16	3892358	3898913	+	0	NA	intron (NM_029090, intron 2 of 6)	ORR1E|LTR|ERVL-MaLR	11016	NM_001290689	74763	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|Nat15	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	nan	3.907	1.872	3.126	2.614	1.074	nan	4.525	3.068	2.858	2.784	1.413	3.309	6.901	4.163	4.363	2.743	3.498	0.796	0.866	0.582	0.873	0.612	0.233	3.123
5113	chr15	36349332	36350488	+	0	NA	Intergenic	Intergenic	-66763	NM_013923	30945	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	3.082	2.221	0.620	3.890	1.233	0.508	3.475	7.090	0.918	2.608	0.537	0.198	4.326	4.081	4.291	2.870	1.447	5.166	0.404	0.448	0.284	nan	0.372	0.292	5.295
3802	chr12	118916708	118920055	+	0	NA	intron (NM_029961, intron 14 of 27)	intron (NM_029961, intron 14 of 27)	48040	NM_029961	77706	Mm.261496	NM_029961	ENSMUSG00000072791	Abcb5	9230106F14Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding	7.213	1.372	0.866	3.142	2.833	1.571	3.260	3.477	2.444	2.850	1.527	0.855	2.402	2.336	3.148	4.603	2.830	5.511	3.183	1.143	0.727	1.141	1.216	0.748	6.167
11265	chr5	64749974	64751923	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-52575	NM_008453	16599	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	2.303	4.166	0.985	5.798	0.765	0.513	0.704	0.959	2.375	1.481	2.977	2.190	1.136	2.201	2.471	2.232	0.664	3.345	0.832	0.476	0.629	nan	0.303	0.207	1.841
8284	chr2	60645145	60651597	+	0	NA	intron (NM_021359, intron 7 of 14)	intron (NM_021359, intron 7 of 14)	25322	NM_021359	16420	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	6.076	1.709	0.739	4.797	2.730	1.024	4.215	6.234	4.316	4.566	4.520	2.630	4.847	5.643	5.566	6.746	4.456	6.407	1.074	0.712	0.521	1.046	0.569	0.335	6.335
4811	chr14	70166943	70168281	+	0	NA	intron (NM_145978, intron 8 of 9)	intron (NM_145978, intron 8 of 9)	-8110	NM_001004155	268759	Mm.12148	NM_001004155	ENSMUSG00000044551	9930012K11Rik	-	RIKEN cDNA 9930012K11 gene	protein-coding	5.301	5.606	2.582	5.568	2.343	1.071	4.831	6.436	2.592	3.413	3.434	2.741	3.078	4.547	4.521	6.211	4.687	3.328	1.753	nan	1.878	1.741	1.318	1.649	8.349
3004	chr11	116378129	116385748	+	0	NA	intron (NM_027258, intron 2 of 18)	intron (NM_027258, intron 2 of 18)	31094	NM_027258	217340	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	3.481	nan	1.203	4.046	8.364	5.463	nan	nan	3.931	nan	3.531	2.853	4.275	8.899	2.359	2.626	1.862	nan	0.747	nan	1.236	1.457	0.767	0.721	2.784
6867	chr17	78599050	78602641	+	0	NA	intron (NM_028813, intron 8 of 13)	intron (NM_028813, intron 8 of 13)	92782	NM_028813	74199	Mm.292983	NM_028813	ENSMUSG00000024076	Vit	1700052E02Rik|1700110E08Rik|2810429K11Rik	vitrin	protein-coding	2.460	3.955	0.762	5.701	1.413	1.271	nan	nan	nan	6.408	3.385	2.556	2.304	2.486	3.010	nan	1.323	2.806	2.265	2.127	2.783	3.829	2.910	3.860	3.545
3676	chr12	103922290	103924547	+	0	NA	Intergenic	Intergenic	-18468	NM_009245	20702	Mm.439692	NM_009245	ENSMUSG00000079015	Serpina1c	Pi3|Pi6|Skalp|Spi1-3|Spi1-6|Wap3	serine (or cysteine) peptidase inhibitor, clade A, member 1C	protein-coding	2.736	1.823	0.465	2.162	1.863	0.546	1.605	2.486	2.719	2.491	2.895	1.165	2.097	3.398	2.399	4.331	3.504	3.358	3.001	2.198	1.246	2.864	1.751	1.029	6.186
7303	chr18	61882999	61891211	+	0	NA	intron (NM_198649, intron 1 of 22)	intron (NM_198649, intron 1 of 22)	24719	NM_198649	319713	Mm.329478	NM_198649	ENSMUSG00000032735	Ablim3	AW990719|D930036B08Rik	actin binding LIM protein family, member 3	protein-coding	7.605	nan	1.927	nan	3.310	1.769	7.111	7.337	3.862	4.263	2.009	1.764	nan	6.841	6.704	6.971	5.124	9.078	nan	1.234	0.979	nan	1.516	1.350	nan
3939	chr13	34056163	34058202	+	0	NA	intron (NM_026512, intron 4 of 6)	B3|SINE|B2	19541	NM_026512	68021	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	8.809	5.324	2.409	6.735	3.538	2.493	7.616	9.012	5.324	5.962	7.196	2.919	6.744	8.769	7.473	7.820	5.011	6.713	3.530	3.573	1.438	3.288	3.701	2.781	7.885
13345	chr7	86398759	86412801	+	0	NA	intron (NM_212436, intron 1 of 2)	intron (NM_212436, intron 1 of 2)	1931	NM_212436	257958	Mm.377315	NM_212436	ENSMUSG00000061549	Olfr301	MOR211-8P|MOR221-1P|MOR221-4|Olfr1531-ps1	olfactory receptor 301	protein-coding	5.727	1.168	0.694	2.604	4.367	2.761	9.247	13.508	nan	8.082	4.193	2.931	8.296	7.986	6.813	nan	nan	nan	0.961	0.949	0.764	nan	0.961	0.757	nan
9066	chr2	170156835	170159379	+	0	NA	Intergenic	Intergenic	-15432	NM_001159683	228913	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	1.697	0.996	1.125	0.819	0.991	1.112	2.240	1.036	1.434	0.784	0.945	1.709	1.329	1.789	1.019	1.620	1.262	nan	5.299	7.658	7.865	5.629	5.420	5.491	nan
4272	chr13	83742598	83750010	+	0	NA	Intergenic	Intergenic	7490	NR_029545	723967		NR_029545	ENSMUSG00000065424	Mir9-2	Mirn9-2|mir-9-2|mmu-mir-9-2	microRNA 9-2	ncRNA	1.670	7.819	5.343	1.462	0.784	0.365	1.096	0.756	1.375	1.234	0.932	0.876	1.020	1.815	1.954	1.198	1.489	1.926	1.688	1.436	0.943	2.512	0.809	0.524	0.749
8505	chr2	103316765	103326004	+	0	NA	Intergenic	Intergenic	-18188	NM_007914	13661	Mm.10724	NM_007914	ENSMUSG00000012350	Ehf	9030625L19Rik|AU019492	ets homologous factor	protein-coding	6.856	3.597	2.031	4.042	1.940	0.927	4.894	8.712	3.679	4.491	1.596	1.318	6.745	6.979	6.429	8.717	6.905	5.886	0.843	0.986	0.885	nan	0.536	0.384	6.944
51	chr1	21004188	21006339	+	0	NA	intron (NM_177409, intron 7 of 10)	L2b|LINE|L2	53637	NM_027974	71877	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	5.547	1.858	1.128	3.944	8.115	5.230	4.406	6.855	4.034	5.692	4.077	3.280	4.558	5.564	4.990	5.697	2.574	5.249	1.807	1.045	1.181	1.318	1.402	0.988	3.204
14580	chr8	109495041	109501232	+	0	NA	intron (NM_019938, intron 2 of 20)	intron (NM_019938, intron 2 of 20)	4109	NM_019938	56523	Mm.42166	NM_019938	ENSMUSG00000031727	Pmfbp1	1700016D22Rik|F77|Stap	polyamine modulated factor 1 binding protein 1	protein-coding	4.396	1.982	1.108	3.804	7.305	6.363	2.867	3.962	3.534	3.423	2.399	2.434	4.351	4.887	3.592	3.285	3.168	4.840	1.314	1.744	1.411	nan	1.142	1.125	2.617
456	chr1	93349361	93363137	+	0	NA	intron (NM_023200, intron 7 of 9)	RSINE1|SINE|B4	4091	NR_105763	102466630		NR_105763	ENSMUSG00000098689	Mir6345	Gm27819|mmu-mir-6345	microRNA 6345	ncRNA	9.872	nan	0.556	6.507	3.362	1.669	7.443	6.581	5.338	6.748	6.327	3.618	8.101	8.399	7.445	nan	7.209	7.914	nan	2.706	2.211	nan	3.075	2.789	9.849
1822	chr10	122327051	122339214	+	0	NA	Intergenic	MER77B|LTR|ERVL	-115367	NM_016847	54140	Mm.4351	NM_016847	ENSMUSG00000020123	Avpr1a	AVPR|Avpr1|V1a|V1aR	arginine vasopressin receptor 1A	protein-coding	7.422	1.490	0.804	4.615	5.192	3.437	4.114	3.536	4.220	5.772	2.378	1.055	5.298	6.959	4.735	5.991	4.458	5.327	0.903	1.001	0.944	1.160	0.718	0.573	6.291
7533	chr19	8945284	8947376	+	0	NA	exon (NM_011842, exon 6 of 18)	exon (NM_011842, exon 6 of 18)	4410	NM_011842	23942	Mm.25339	NM_011842	ENSMUSG00000071646	Mta2	AW550797|Mata1l1|Mta1l1|mmta2	metastasis-associated gene family, member 2	protein-coding	9.959	11.502	5.233	11.977	4.648	5.040	11.057	12.412	nan	9.203	6.539	4.533	7.735	9.146	9.808	10.228	10.369	10.198	2.613	2.824	5.285	5.615	4.163	5.612	16.576
12402	chr6	87164542	87183078	+	0	NA	intron (NM_054041, intron 17 of 17)	B1_Mur2|SINE|Alu	69064	NM_001167937	52372	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	2.442	0.835	0.509	nan	2.378	1.523	6.924	2.110	2.923	3.020	3.875	2.530	4.897	5.151	4.416	8.167	4.064	nan	nan	0.686	0.512	0.679	0.636	0.419	5.645
7093	chr18	26449876	26451309	+	0	NA	Intergenic	Lx9|LINE|L1	-696609	NM_001174074	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	3.893	0.336	0.232	1.667	0.836	0.248	2.756	1.468	1.752	2.761	0.396	0.449	5.547	4.030	2.654	2.153	3.266	4.617	nan	0.690	0.154	nan	0.235	0.687	1.287
6693	chr17	47595014	47596815	+	0	NA	intron (NM_001081635, intron 4 of 6)	intron (NM_001081635, intron 4 of 6)	2447	NM_007632	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	1.582	0.598	0.579	0.845	1.163	0.630	2.079	2.469	0.933	1.150	1.302	2.024	0.672	nan	0.695	0.700	1.513	0.843	3.675	2.959	3.926	2.175	5.094	4.723	1.166
1033	chr1	193258313	193263044	+	0	NA	intron (NM_008288, intron 1 of 6)	B4A|SINE|B4	3367	NM_008288	15483	Mm.28328	NM_008288	ENSMUSG00000016194	Hsd11b1	-	hydroxysteroid 11-beta dehydrogenase 1	protein-coding	6.740	1.437	0.857	4.055	2.839	1.826	5.944	4.493	3.655	4.249	2.007	1.309	5.438	7.344	6.493	10.600	5.741	6.743	2.268	1.316	0.927	1.997	nan	1.230	7.089
4059	chr13	45598271	45600741	+	0	NA	intron (NM_001199304, intron 5 of 6)	B4|SINE|B4	92062	NM_025508	66355	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	2.401	0.431	0.405	nan	3.654	2.385	1.971	1.603	3.324	2.760	0.627	0.329	2.996	5.412	4.093	5.492	2.677	2.684	0.572	nan	0.558	0.510	0.427	0.578	5.122
2736	chr11	98014101	98016333	+	0	NA	intron (NM_001282977, intron 3 of 13)	intron (NM_001282977, intron 3 of 13)	3155	NM_001159320	12295	Mm.41252	NM_031173	ENSMUSG00000020882	Cacnb1	CAB1|Cchb1|Cchlb1	calcium channel, voltage-dependent, beta 1 subunit	protein-coding	3.609	nan	0.458	1.827	2.138	1.170	2.162	2.461	1.668	2.339	1.112	0.418	1.649	3.863	2.406	1.707	2.050	2.380	1.371	nan	0.387	0.908	nan	nan	2.759
10626	chr4	132305284	132307868	+	0	NA	Intergenic	Intergenic	-2102	NR_029468	100039864	Mm.258912	NR_029468	ENSMUSG00000086290	Snhg12	2310005L22Rik	small nucleolar RNA host gene 12	ncRNA	0.917	1.081	1.755	1.731	3.467	3.876	2.795	2.728	1.858	2.149	2.010	2.045	3.182	3.683	nan	0.736	1.688	1.156	0.800	1.728	2.773	0.908	0.460	0.724	0.911
14279	chr8	71660581	71664992	+	0	NA	intron (NM_001029873, intron 6 of 41)	intron (NM_001029873, intron 6 of 41)	8971	NM_001029873	382018	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	2.100	0.797	0.335	1.210	0.695	0.233	1.227	1.606	1.211	1.331	0.574	0.318	1.826	1.981	2.599	5.186	2.146	2.351	nan	0.391	0.391	1.014	0.208	0.282	nan
10246	chr4	87799307	87804590	+	0	NA	intron (NM_027326, intron 5 of 10)	intron (NM_027326, intron 5 of 10)	4375	NM_001286158	70122	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.962	nan	0.727	0.706	0.604	0.308	0.533	nan	nan	0.713	0.620	0.860	0.487	0.480	0.615	0.923	0.684	nan	4.531	4.459	2.359	14.044	5.689	3.589	nan
8983	chr2	165560019	165568553	+	0	NA	Intergenic	Intergenic	-30742	NM_001271963	14049	Mm.282719	NM_010165	ENSMUSG00000017897	Eya2	Eab1	EYA transcriptional coactivator and phosphatase 2	protein-coding	0.379	0.893	0.549	0.583	0.267	0.181	0.441	0.682	0.402	0.440	0.504	0.389	0.269	nan	0.392	0.621	0.566	nan	nan	2.432	1.948	5.818	2.282	2.044	nan
10836	chr4	141635534	141641776	+	0	NA	intron (NM_001033150, intron 6 of 19)	B1_Mus1|SINE|Alu	-14821	NM_001013780	384071	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	nan	4.772	1.607	4.678	2.282	1.189	3.508	5.655	nan	4.510	4.206	2.463	3.371	4.967	4.398	5.105	2.495	4.698	4.904	2.291	2.424	6.505	4.494	3.679	8.410
1539	chr10	82517997	82524250	+	0	NA	Intergenic	Intergenic	-28505	NM_001255990	432480	Mm.280394	NM_001255990	ENSMUSG00000094186	Gm1553	Lcrn	predicted gene 1553	protein-coding	0.875	1.016	0.601	nan	0.260	0.277	0.419	0.517	0.465	0.520	1.608	0.553	0.336	0.345	nan	0.704	0.539	0.560	5.296	3.401	2.996	5.874	3.606	2.538	0.968
14592	chr8	111345163	111347519	+	0	NA	3' UTR (NM_178086, exon 7 of 7)	3' UTR (NM_178086, exon 7 of 7)	-8136	NM_029005	74568	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	3.957	1.005	0.581	2.933	1.996	0.698	4.244	5.120	1.818	1.882	0.695	0.851	4.448	3.481	4.136	6.113	3.838	3.240	2.554	1.316	1.363	nan	1.913	2.075	7.078
9939	chr4	11116774	11120976	+	0	NA	Intergenic	B4|SINE|B4	-15222	NR_030455	735261		NR_030455	ENSMUSG00000105333	Mir684-2	Mirn684-2	microRNA 684-2	ncRNA	2.725	4.696	2.046	2.938	1.542	1.230	3.229	2.991	1.417	3.653	2.112	1.283	2.418	3.182	3.664	4.557	2.078	3.571	6.229	nan	2.919	7.057	4.752	6.035	5.280
9122	chr2	181253921	181261249	+	0	NA	intron (NM_198169, intron 6 of 9)	intron (NM_198169, intron 6 of 9)	-15558	NM_183162	229003	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	8.986	5.151	1.966	6.039	5.945	3.097	5.037	8.170	4.379	6.285	4.226	2.953	5.410	6.732	6.266	7.170	6.100	7.467	3.300	2.173	1.605	3.327	2.205	1.898	7.556
6702	chr17	47799769	47803722	+	0	NA	Intergenic	B4A|SINE|B4	16001	NM_011549	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	2.775	0.539	0.644	2.870	5.749	4.705	4.441	1.842	2.542	2.705	2.041	1.186	4.800	7.956	4.932	5.341	4.309	4.719	0.541	0.711	0.677	0.536	0.506	0.580	5.627
6054	chr16	36770377	36778393	+	0	NA	intron (NM_001145899, intron 5 of 6)	intron (NM_001145899, intron 5 of 6)	10577	NM_001145899	57738	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	8.071	0.646	0.497	3.126	3.971	1.786	7.820	7.336	4.246	5.533	1.571	0.645	9.335	10.152	5.937	8.086	7.195	8.098	1.550	0.998	0.588	0.994	1.433	0.924	nan
366	chr1	82970818	82973375	+	0	NA	Intergenic	MER92A|LTR|ERV1	66352	NM_030556	80721	Mm.261542	NM_030556	ENSMUSG00000038496	Slc19a3	A230084E24Rik|AI788884|ThTr2	solute carrier family 19, member 3	protein-coding	7.200	1.584	0.698	3.567	4.600	3.035	5.112	6.223	4.492	4.397	2.093	2.877	6.740	4.806	4.960	5.124	4.729	6.486	2.727	nan	1.231	1.152	nan	1.912	2.906
8102	chr2	30915584	30919297	+	0	NA	Intergenic	RSINE1|SINE|B4	-14143	NM_022415	64292	Mm.28768	NM_022415	ENSMUSG00000050737	Ptges	2410099E23Rik|D2Ertd369e|Pges|mPGES|mPGES-1	prostaglandin E synthase	protein-coding	3.343	11.539	7.233	2.201	2.771	2.209	1.447	1.067	nan	2.275	1.965	1.482	0.805	1.691	1.427	1.900	1.688	1.327	1.002	1.698	1.684	0.638	0.591	0.612	2.201
9351	chr3	61166455	61170723	+	0	NA	Intergenic	Intergenic	165804	NM_001282016	18441	Mm.281452	NM_008772	ENSMUSG00000027765	P2ry1	P2Y1	purinergic receptor P2Y, G-protein coupled 1	protein-coding	5.573	4.695	1.436	6.276	1.224	0.623	5.239	4.783	3.876	5.138	7.873	3.234	2.965	4.828	nan	4.204	1.440	6.130	1.661	0.847	0.861	2.297	0.790	0.517	6.682
14019	chr8	12396090	12402063	+	0	NA	3' UTR (NM_009233, exon 1 of 1)	3' UTR (NM_009233, exon 1 of 1)	3557	NM_009233	20664	Mm.39088	NM_009233	ENSMUSG00000096014	Sox1	BB176347|Sox-1	SRY (sex determining region Y)-box 1	protein-coding	0.267	0.364	0.351	0.252	0.217	0.079	0.162	0.291	0.197	0.314	0.271	0.072	0.121	0.255	0.167	0.385	0.350	0.219	7.629	2.565	2.086	12.158	6.004	6.095	0.436
14189	chr8	45432302	45433790	+	0	NA	Intergenic	LTR72_RN|LTR|ERV1	-22507	NM_126166	142980	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	4.637	0.311	0.077	1.501	2.152	0.750	4.451	4.704	3.936	3.101	2.760	1.719	5.880	4.470	3.883	5.991	5.871	4.661	0.770	0.947	0.141	0.879	0.528	0.284	2.706
11103	chr5	30889438	30897863	+	0	NA	intron (NM_001294262, intron 7 of 11)	intron (NM_001294262, intron 7 of 11)	4316	NM_001294262	231093	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	1.031	3.095	1.358	nan	0.507	0.246	0.663	0.552	0.632	0.913	0.303	0.376	0.371	0.455	0.724	0.798	0.560	0.945	3.485	2.817	2.342	5.622	4.315	4.126	0.925
5621	chr15	98470096	98471148	+	0	NA	Intergenic	Intergenic	12061	NM_010679	16770	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	3.899	0.670	0.389	1.474	0.909	0.154	4.640	7.612	1.767	1.927	1.147	0.796	4.215	3.501	3.247	3.083	3.199	2.705	2.275	1.389	0.846	0.913	0.777		3.498
5358	chr15	76286425	76297116	+	0	NA	intron (NM_028852, intron 4 of 4)	intron (NM_028852, intron 4 of 4)	-2664	NM_001195537	100503915	Mm.393455	NM_001195537	ENSMUSG00000071724	Smpd5	ENSMUSG00000071724|Gm10345|MA-nSMase	sphingomyelin phosphodiesterase 5	protein-coding	nan	nan	0.439	nan	1.187	0.728	nan	3.170	1.518	nan	nan	0.615	3.274	nan	3.650	3.378	nan	3.587	4.099	2.075	2.036	nan	2.556	1.805	6.056
3727	chr12	111733643	111738913	+	0	NA	intron (NM_001163388, intron 4 of 5)	B1_Mm|SINE|Alu	-22571	NM_008450	16593	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	9.223	8.003	2.830	5.984	2.760	1.742	7.718	4.672	4.095	4.407	3.512	2.952	5.602	6.290	6.938	9.960	7.290	7.116	3.253	2.383	2.034	2.721	2.040	1.859	14.739
8885	chr2	157197670	157203649	+	0	NA	intron (NM_011249, intron 1 of 21)	B2_Mm2|SINE|B2	3875	NM_011249	19650	Mm.244671	NM_011249	ENSMUSG00000027641	Rbl1	AW547426|PRB1|p107	retinoblastoma-like 1 (p107)	protein-coding	nan	1.811	0.909	3.593	4.718	2.569	7.779	3.604	nan	nan	2.476	3.038	nan	nan	6.249	8.860	6.851	nan	nan	0.743	0.604	0.532	0.646	0.377	nan
11362	chr5	76612281	76614680	+	0	NA	intron (NM_199032, intron 10 of 24)	intron (NM_199032, intron 10 of 24)	21766	NM_199032	381644	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	6.498	8.028	2.606	8.272	3.213	1.604	6.500	7.032	3.994	9.486	3.722	2.840	6.369	8.134	8.668	9.848	5.381	8.700	5.062	1.988	1.551	5.135	2.894	3.097	11.604
10950	chr4	151359675	151363696	+	0	NA	intron (NM_001081557, intron 5 of 23)	intron (NM_001081557, intron 5 of 23)	272115	NM_001308446	105704528	Mm.415128	NM_001308446	ENSMUSG00000078491	Gm13090	OTTMUSG00000010356	predicted gene 13090	protein-coding	6.287	5.860	1.437	5.837	5.299	3.609	7.126	8.043	3.665	6.073	3.687	2.757	5.246	9.360	7.222	7.254	4.745	6.378	4.511	1.986	2.255	6.789	2.728	3.135	9.456
6196	chr16	91450585	91453655	+	0	NA	Intergenic	Intergenic	-12984	NR_077219	100503120	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	7.434	5.226	1.948	4.852	2.948	1.587	5.609	6.501	4.825	5.327	2.118	1.872	7.970	6.204	7.852	9.085	3.252	8.398	1.021	0.885	0.400	nan	0.468	0.288	6.171
3527	chr12	81753168	81758215	+	0	NA	intron (NM_001174107, intron 2 of 10)	intron (NM_001174107, intron 2 of 10)	25479	NM_177395	338372	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	5.947	0.600	0.467	3.137	2.210	1.654	5.447	5.759	4.073	3.082	2.196	1.790	7.417	nan	6.483	6.934	7.869	5.898	0.747	0.661	0.559	0.891	0.480	0.688	7.815
6821	chr17	71327914	71330205	+	0	NA	Intergenic	Lx|LINE|L1	12745	NR_028023	100043644	Mm.362377	NR_028023		Gm4566	-	ubiquitin specific peptidase 16 pseudogene	pseudo	3.233	1.354	0.896	3.334	3.976	2.656	5.445	4.619	4.196	4.560	1.617	0.612	4.713	4.230	4.719	6.144	5.828	4.034	3.142	1.898	2.049	2.430	2.886	2.738	4.954
2343	chr11	67847026	67851287	+	0	NA	Intergenic	L1M5|LINE|L1	50885	NM_001013013	68460	Mm.22167	NM_001013013	ENSMUSG00000033044	Dhrs7c	1110001P11Rik|AI120487|SRP-35	dehydrogenase/reductase (SDR family) member 7C	protein-coding	3.047	0.501	0.304	3.390	1.495	0.681	4.638	0.460	1.416	1.792	0.387	0.386	4.522	6.205	5.365	2.724	2.283	2.006	0.536	0.512	0.333	0.645	nan	0.276	nan
14291	chr8	72662759	72664459	+	0	NA	intron (NM_176940, intron 4 of 18)	ID_B1|SINE|B4	16898	NM_176940	319555	Mm.212927	NM_176940	ENSMUSG00000048148	Nwd1	A230063L24Rik	NACHT and WD repeat domain containing 1	protein-coding	10.190	13.048	5.323	7.426	4.175	1.880	6.046	9.163	4.653	5.861	6.715	2.201	7.891	9.388	8.820	10.559	6.954	6.979	nan	4.086	2.392	6.432	3.763	1.623	10.366
13287	chr7	74792335	74793490	+	0	NA	Intergenic	Intergenic	-237299	NR_131122	75205	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	-	RIKEN cDNA 4930533N22 gene	ncRNA	3.723	1.395	0.879	nan	3.012	2.320	3.438	4.416	4.324	3.924	4.816	3.022	5.402	4.032	4.341	nan	4.302	6.300	0.760	0.384	0.186	0.670	0.791	0.623	4.614
6440	chr17	26824622	26828215	+	0	NA	Intergenic	Intergenic	15147	NM_008700	18091	Mm.41974	NM_008700	ENSMUSG00000015579	Nkx2-5	Csx|Nkx-2.5|Nkx2.5|tinman	NK2 homeobox 5	protein-coding	1.382	1.391	0.964	1.294	0.899	0.514	0.767	1.183	0.922	0.935	0.573	0.648	0.459	0.816	0.846	nan	0.863	1.106	3.306	1.956	1.620	4.230	2.289	1.881	1.253
13574	chr7	117236929	117245501	+	0	NA	Intergenic	LTR84a|LTR|ERVL	-139764	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	3.766	0.886	0.632	3.751	3.956	2.800	5.539	6.376	2.737	2.654	1.355	0.749	6.012	7.195	6.857	5.803	6.741	5.327	0.828	0.532	0.619	0.696	1.161	1.039	5.460
7052	chr18	20667604	20671123	+	0	NA	intron (NM_013697, intron 2 of 3)	(TG)n|Simple_repeat|Simple_repeat	4113	NM_013697	22139	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	nan	0.580	0.488	0.304	0.188	0.118	0.409	0.756	0.571	0.386	8.446	2.336	0.425	0.312	0.413	0.497	0.661	0.508	0.705	0.291	0.337	0.577	0.371	0.316	0.427
6754	chr17	56697768	56701183	+	0	NA	intron (NR_045519, intron 5 of 16)	intron (NR_045519, intron 5 of 16)	17446	NM_178926	106639	Mm.37290	NM_178926	ENSMUSG00000054723	Vmac	AI662250	vimentin-type intermediate filament associated coiled-coil protein	protein-coding	nan	nan	0.618	1.648	1.945	1.183	2.865	2.804	1.683	2.212	1.110	0.488	3.539	4.950	3.424	3.299	2.923	2.070	0.998	0.899	0.728	1.151	0.884	0.757	4.236
3771	chr12	114088793	114090796	+	0	NA	Intergenic	Intergenic	379672	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	2.781	1.124	0.492	1.735	2.324	0.756	4.516	6.573	2.318	2.750	7.029	3.332	4.347	5.391	3.929	6.529	3.518	2.482	0.576	0.348	0.929	0.548	0.715	0.184	4.537
1011	chr1	189724778	189727045	+	0	NA	Intergenic	Intergenic	-2357	NM_008976	19250	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|OTTMUSG00000022087|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	1.055	0.491	0.172	0.822	0.350	0.324	2.328	1.435	1.330	0.930	0.359	0.265	2.880	1.223	2.021	nan	1.891	2.069	0.391	0.154	0.241	0.321	0.217	0.165	1.522
10460	chr4	120077366	120080015	+	0	NA	intron (NM_010657, intron 3 of 8)	intron (NM_010657, intron 3 of 8)	-82516	NM_007902	13615	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	6.454	7.477	2.973	6.894	4.964	3.852	6.412	4.509	4.870	12.218	4.174	3.440	7.011	7.105	6.149	7.764	5.009	8.113	7.221	2.874	5.102	8.541	4.630	7.283	13.484
8463	chr2	93283101	93289405	+	0	NA	intron (NM_183180, intron 2 of 9)	intron (NM_183180, intron 2 of 9)	48234	NM_183180	241556	Mm.274159	NM_183180	ENSMUSG00000027217	Tspan18	2610042G18Rik|6720430O15|BB226562	tetraspanin 18	protein-coding	nan	12.185	3.631	2.112	0.448	0.198	0.696	2.218	0.803	1.029	0.961	0.837	0.642	0.867	0.796	1.277	0.617	1.257	0.602	0.453	0.490	0.856	0.226	0.124	nan
6770	chr17	63036231	63040539	+	0	NA	Intergenic	Intergenic	-157068	NM_010109	13640	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	6.283	1.291	1.124	3.426	4.447	2.637	9.035	4.949	nan	4.572	6.849	4.868	4.480	5.396	5.477	5.410	4.947	5.075	3.390	2.589	1.993	3.734	2.434	2.713	3.616
4515	chr14	21664077	21668548	+	0	NA	intron (NM_017479, intron 16 of 16)	RSINE1|SINE|B4	48264	NM_001013826	435391	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	5.849	2.992	1.175	3.175	4.561	2.235	5.354	7.077	4.821	3.936	7.886	3.333	4.172	8.826	6.746	4.732	3.804	3.888	1.674	1.245	0.836	nan	1.092	0.720	5.989
1754	chr10	115994751	115998375	+	0	NA	Intergenic	Intergenic	-21800	NM_011217	19279	Mm.336316	NM_011217	ENSMUSG00000020151	Ptprr	Gmcp1|PTP-SL|PTPBR7|RPTPRR|mPTP213	protein tyrosine phosphatase, receptor type, R	protein-coding	1.364	6.727	7.792	0.942	1.436	0.737	0.707	1.086	1.177	1.208	1.354	0.716	0.655	0.711	0.589	0.876	1.157	nan	2.791	2.459	2.604	1.054	2.406	2.528	0.826
13169	chr7	52248444	52250703	+	0	NA	Intergenic	Intergenic	-233857	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	0.515	1.509	0.551	1.007	0.725	0.625	0.644	1.002	0.648	0.641	0.421	0.174	0.314	0.441	0.766	0.918	0.411	1.071	7.223	3.730	3.947	9.377	6.762	5.946	1.135
9714	chr3	109424821	109427117	+	0	NA	intron (NM_020505, intron 2 of 26)	intron (NM_020505, intron 2 of 26)	85286	NM_020505	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.499	0.711	0.602	0.526	0.322	0.111	1.753	1.844	0.852	0.843	6.482	3.180	1.469	0.688	nan	0.759	0.741	0.740	0.932	0.418	0.053	0.302	0.509	0.491	0.299
10358	chr4	107551727	107553076	+	0	NA	intron (NM_147221, intron 2 of 10)	intron (NM_147221, intron 2 of 10)	117682	NM_147221	230587	Mm.331757	NM_147221	ENSMUSG00000034762	Glis1	Gli5|Gli6|GliH1	GLIS family zinc finger 1	protein-coding	5.360	9.016	2.307	6.171	1.955	1.778	4.219	6.189	5.805	4.932	4.732	3.225	4.981	6.196	7.634	8.612	3.655	7.771	6.034	3.410	2.538	9.602	2.713	2.283	8.975
10557	chr4	128734664	128737663	+	0	NA	intron (NM_001195083, intron 1 of 6)	intron (NM_001195083, intron 1 of 6)	8592	NM_001195083	54383	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic-like 2 (Drosophila)	protein-coding	7.098	13.242	3.591	8.578	4.475	2.883	4.705	4.449	4.289	11.922	5.038	3.588	5.428	7.200	7.270	8.482	4.491	7.723	6.110	3.494	3.542	8.977	3.981	4.810	11.637
6563	chr17	34340485	34343346	+	0	NA	TTS (NM_010381)	TTS (NM_010381)	2730	NM_010381	100504404	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	7.695	20.137	10.135	8.170	7.102	4.836	9.656	7.796	4.229	6.493	4.092	2.123	4.883	9.235	5.788	9.765	8.464	5.530	5.011	4.841	4.902	4.599	6.042	4.913	15.084
2093	chr11	42904073	42908653	+	0	NA	Intergenic	Intergenic	-243514	NM_176999	319767	Mm.252339	NM_176999	ENSMUSG00000055415	Atp10b	5930426O13Rik|9030605H24Rik	ATPase, class V, type 10B	protein-coding	nan	6.957	3.019	0.350	0.125	0.079	0.216	0.338	0.200	0.216	0.217	0.233	0.097	0.179	0.201	nan	0.180	nan	1.048	0.670	0.465	2.715	0.527	0.330	0.200
6160	chr16	77174703	77175901	+	0	NA	Intergenic	Intergenic	-154026	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	2.400	0.341	0.435	1.791	0.646	0.245	1.782	2.998	1.112	1.512	0.405	0.246	2.089	2.929	3.177	4.271	3.731	2.101	nan	0.213	0.180	0.740	0.073	0.231	1.575
1927	chr11	5138285	5142268	+	0	NA	intron (NM_080595, intron 3 of 14)	intron (NM_080595, intron 3 of 14)	11946	NM_080595	140703	Mm.840	NM_080595	ENSMUSG00000034164	Emid1	AW122071|CO-5|Emu1	EMI domain containing 1	protein-coding	3.681	1.245	0.942	2.631	2.603	1.402	3.769	2.793	2.792	2.788	8.084	3.847	3.932	5.715	2.939	3.400	3.247	4.407	1.811	nan	0.718	1.395	2.270	1.593	2.874
4779	chr14	65975099	65980420	+	0	NA	intron (NM_013492, intron 6 of 8)	intron (NM_013492, intron 6 of 8)	9276	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	6.308	4.094	2.146	5.451	3.521	2.190	7.763	10.820	4.061	7.505	4.517	2.649	6.405	8.138	7.700	8.464	4.921	5.460	3.628	nan	1.954	3.293	4.476	4.058	10.247
14106	chr8	27950223	27952591	+	0	NA	Intergenic	Intergenic	133446	NR_033590	666422	Mm.484413	NR_033590	ENSMUSG00000110372	Gm8096	EG666422	3-phosphoglycerate dehydrogenase pseudogene	pseudo	2.471	nan	0.389	1.098	0.987	0.504	3.096	4.449	3.252	3.323	2.454	3.078	4.224	4.231	4.586	5.843	4.357	3.773	4.554	4.390	3.676	12.395	4.147	2.733	5.164
10139	chr4	59817754	59839078	+	0	NA	intron (NM_172468, intron 1 of 8)	intron (NM_172468, intron 1 of 8)	22766	NM_172468	209131	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	6.569	nan	4.754	4.363	5.257	3.440	nan	5.196	4.131	6.275	1.776	1.287	4.783	7.683	5.082	5.995	3.670	6.464	nan	2.489	2.196	6.118	3.530	2.927	7.257
5457	chr15	80984024	80986766	+	0	NA	intron (NM_134091, intron 1 of 21)	B2_Mm2|SINE|B2	7630	NM_134091	105835	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	9.387	5.430	3.015	3.138	2.843	1.755	10.211	13.362	5.530	4.594	5.600	2.892	13.278	7.966	10.011	7.406	9.101	7.923	1.263	1.085	0.685	nan	1.939	1.263	6.458
14630	chr8	116785492	116786890	+	0	NA	intron (NR_046193, intron 3 of 3)	B3|SINE|B2	15221	NR_046193	78213	Mm.402039	NR_046193		4930563M20Rik	-	RIKEN cDNA 4930563M20 gene	ncRNA	3.655	0.327	0.275	0.212	0.680	0.345	4.596	6.073	1.366	2.512	0.778	0.226	4.211	3.837	4.768	nan	1.741	3.410	0.989	0.483	0.778	0.378	1.095	0.964	1.604
1442	chr10	75392699	75396185	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	-12469	NM_133995	103149	Mm.441195	NM_133995	ENSMUSG00000033427	Upb1	AI195023	ureidopropionase, beta	protein-coding	3.769	2.596	0.526	3.913	2.798	1.417	3.173	2.089	2.434	4.411	1.220	0.755	2.806	4.377	nan	5.256	2.973	5.474	nan	1.741	1.418	3.707	2.305	2.019	8.165
1614	chr10	93577513	93579833	+	0	NA	intron (NM_175488, intron 13 of 15)	intron (NM_175488, intron 13 of 15)	-10740	NR_045810	74454	Mm.410794	NR_045810	ENSMUSG00000097407	4933408J17Rik	-	RIKEN cDNA 4933408J17 gene	ncRNA	3.373	1.499	1.508	2.945	3.557	1.755	2.591	1.998	2.717	3.213	nan	1.350	2.888	4.879	3.116	3.470	3.381	3.493	nan	0.891	0.740	nan	0.584	0.589	3.323
2218	chr11	54747992	54751281	+	0	NA	intron (NM_178626, intron 2 of 5)	B3|SINE|B2	38067	NM_178626	72729	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	5.092	9.231	4.781	3.095	4.572	2.129	4.674	6.855	3.527	3.312	3.081	2.517	3.660	6.480	4.978	5.743	3.287	3.706	4.626	3.337	1.908	4.888	3.684	2.703	nan
2316	chr11	62633063	62636382	+	0	NA	intron (NM_198861, intron 1 of 3)	PB1D9|SINE|Alu	13801	NM_198861	192976	Mm.339972	NM_198861	ENSMUSG00000046417	Lrrc75a	Fam211a	leucine rich repeat containing 75A	protein-coding	10.085	2.389	1.043	8.409	6.619	4.281	7.280	9.302	5.385	6.061	6.195	3.898	6.497	9.452	7.549	8.906	5.489	8.040	nan	1.952	1.531	1.123	1.221	0.734	8.494
13135	chr7	35924809	35943475	+	0	NA	Intergenic	MTA_Mm-int|LTR|ERVL-MaLR	-131153	NM_177739	668501	Mm.286296	NM_177739	ENSMUSG00000044452	Zfp507	1810022O10Rik|A230056M16Rik|AL024009|AU021817|BB105092|Gm480|Znf507|mKIAA1084	zinc finger protein 507	protein-coding	4.229	1.610	0.655	3.982	3.051	1.493	8.395	9.010	4.098	5.906	2.083	1.532	7.523	9.247	7.391	7.222	4.568	5.584	1.104	0.843	0.513	1.239	1.678	1.251	9.036
7422	chr18	80750367	80752632	+	0	NA	intron (NM_001201569, intron 25 of 29)	intron (NM_001201569, intron 25 of 29)	-38428	NM_001164109	18018	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	8.435	3.325	1.475	6.488	5.629	2.358	7.084	8.710	7.792	12.766	3.346	1.270	12.082	13.359	9.139	10.942	6.663	7.701	5.132	nan	2.312	8.785	2.254	1.226	16.439
4949	chr14	115238012	115242533	+	0	NA	intron (NM_175500, intron 2 of 7)	intron (NM_175500, intron 2 of 7)	148057	NM_175500	103978	Mm.320791	NM_175500	ENSMUSG00000022112	Gpc5	A230034F01Rik	glypican 5	protein-coding	7.732	0.364	0.298	2.376	1.568	0.896	7.424	11.286	5.432	6.731	6.628	2.053	9.364	8.914	6.608	6.549	6.282	5.778	0.622	0.844	0.424	0.347	0.752	0.653	4.351
14298	chr8	73011296	73016113	+	0	NA	intron (NM_001317391, intron 7 of 15)	intron (NM_001317391, intron 7 of 15)	-2808	NR_039551	100628574		NR_039551	ENSMUSG00000093140	Mir28b	mmu-mir-28b	microRNA 28b	ncRNA	8.158	nan	0.713	5.024	2.570	1.326	10.878	6.539	nan	10.681	1.417	1.290	12.311	9.501	9.600	nan	11.326	8.483	nan	0.659	0.552	1.110	0.573	0.593	18.416
1743	chr10	114684451	114691376	+	0	NA	intron (NM_146241, intron 3 of 18)	intron (NM_146241, intron 3 of 18)	113457	NM_146241	237553	Mm.445550	NM_146241	ENSMUSG00000050663	Trhde	9330155P21Rik	TRH-degrading enzyme	protein-coding	5.888	3.450	1.162	4.478	3.794	2.289	3.982	5.315	4.389	4.755	2.772	2.339	4.979	6.019	7.055	6.923	4.760	nan	1.983	1.136	1.111	2.415	1.343	1.374	5.957
10895	chr4	148655656	148657675	+	0	NA	intron (NM_001085505, intron 3 of 10)	intron (NM_001085505, intron 3 of 10)	13348	NM_001085505	230909	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	5.192	2.120	1.140	3.463	4.992	4.054	6.557	3.587	3.494	3.860	2.116	2.506	3.395	5.201	4.757	5.277	3.843	4.461	3.197	2.188	1.730	2.707	7.494	5.815	6.049
6832	chr17	71569952	71575155	+	0	NA	intron (NR_027952, intron 3 of 5)	ID4_|SINE|ID	20492	NM_029254	70891	Mm.477599	NM_029254	ENSMUSG00000052525	Spdya	4921517J08Rik|4930548B21Rik|GS4|MLZ-465|Spdy1	speedy/RINGO cell cycle regulator family, member A	protein-coding	2.010	7.805	4.130	1.878	1.853	1.059	1.036	1.207	nan	2.492	0.817	0.637	1.056	1.675	2.114	2.026	1.508	2.531	0.877	0.674	0.251	0.986	0.426	0.348	1.624
11307	chr5	66590482	66591822	+	0	NA	intron (NM_001310626, intron 1 of 15)	L1MA9|LINE|L1	27665	NM_009686	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	2.665	1.105	0.864	1.888	2.631	1.497	3.187	3.216	2.086	1.794	1.961	2.329	2.795	3.871	3.316	3.314	2.306	3.208	2.658	0.998	1.340	nan	2.041	1.479	1.600
4770	chr14	65581026	65583572	+	0	NA	intron (NR_045599, intron 4 of 14)	intron (NR_045599, intron 4 of 14)	10813	NM_001253812	74195	Mm.29719	NM_028811	ENSMUSG00000022031	Elp3	2610507P14Rik|KAT9	elongator acetyltransferase complex subunit 3	protein-coding	6.452	1.255	1.539	4.811	5.213	3.640	3.490	6.457	5.643	5.966	3.326	3.227	3.785	5.174	3.125	3.360	2.767	5.575	2.652	nan	2.613	2.351	2.795	2.390	3.811
15246	chr9	67641434	67649281	+	0	NA	Intergenic	MTE2b|LTR|ERVL-MaLR	82423	NR_106100	102466824		NR_106100	ENSMUSG00000098937	Mir7241	Gm27918|mmu-mir-7241	microRNA 7241	ncRNA	0.301	1.229	0.712	0.327	0.242	0.073	0.232	0.228	0.414	0.374	0.404	0.220	0.292	0.270	nan	0.370	0.287	0.356	6.978	4.680	2.825	8.823	3.595	2.678	0.639
14946	chr9	32345054	32353517	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	-5048	NM_010605	16521	Mm.69472	NM_010605	ENSMUSG00000032034	Kcnj5	GIRK4|Kir3.4	potassium inwardly-rectifying channel, subfamily J, member 5	protein-coding	3.788	8.788	3.009	5.007	1.750	1.087	1.407	0.943	1.973	3.290	1.438	0.685	1.190	1.663	2.088	nan	1.496	2.864	4.049	3.005	3.127	6.260	1.612	1.650	3.978
13308	chr7	77750747	77752606	+	0	NA	Intergenic	Intergenic	826162	NM_008746	18213	Mm.33496	NM_008746	ENSMUSG00000059146	Ntrk3	AW125844|Ntrk3_tv3|TrkC	neurotrophic tyrosine kinase, receptor, type 3	protein-coding	2.972	0.476	0.134	3.467	3.902	1.452	3.136	4.030	4.227	4.807	1.024	1.770	6.052	6.073	4.906	5.164	3.241	5.232	0.695	0.501	0.264	0.645	0.189	0.262	3.482
13478	chr7	106449158	106462901	+	0	NA	Intergenic	L1_Mus3|LINE|L1	-14956	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	2.191	0.788	0.502	2.286	2.862	1.765	1.228	2.051	2.345	3.038	0.659	0.704	1.623	nan	2.325	nan	2.491	nan	nan	3.496	2.873	5.831	5.704	4.658	3.950
6555	chr17	34135616	34137943	+	0	NA	intron (NM_010386, intron 2 of 5)	intron (NM_010386, intron 2 of 5)	-8637	NM_010388	15000	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	6.609	18.758	6.272	4.231	4.345	3.033	5.251	2.765	1.831	3.913	1.551	1.394	5.595	7.736	3.224	5.034	2.020	5.783	5.263	1.583	3.513	3.840	1.689	2.747	11.772
5898	chr16	22108057	22110337	+	0	NA	intron (NM_183029, intron 2 of 15)	B2_Mm1t|SINE|B2	54102	NM_183029	319765	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	4.467	0.770	1.028	1.598	7.290	6.144	4.063	7.511	1.385	2.057	0.895	0.838	4.495	5.077	3.980	4.544	5.462	3.334	1.464	0.974	0.909	0.990	0.859	1.715	2.390
4109	chr13	49221920	49231515	+	0	NA	Intergenic	L1M3|LINE|L1	-10691	NM_026738	68480	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	nan	0.680	0.337	nan	0.187	0.115	0.420	0.436	0.434	0.377	0.334	0.521	0.178	0.351	0.561	0.649	0.215	nan	4.753	nan	1.546	7.185	4.410	2.906	nan
11943	chr5	145702209	145716134	+	0	NA	intron (NM_017396, intron 4 of 12).2	intron (NM_017396, intron 4 of 12).2	10965	NM_017396	53973	Mm.379071	NM_017396	ENSMUSG00000075551	Cyp3a41a	Cyp3a41	cytochrome P450, family 3, subfamily a, polypeptide 41A	protein-coding	3.660	1.207	0.572	nan	3.865	2.440	5.332	5.747	nan	3.920	2.809	2.468	4.969	7.302	5.618	nan	3.687	4.317	1.618	1.196	0.805	1.877	1.786	1.524	4.433
4401	chr13	110609570	110614667	+	0	NA	Intergenic	L1Md_T|LINE|L1	217074	NM_152804	20620	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo-like kinase 2	protein-coding	nan	nan	2.119	5.648	5.634	3.620	3.255	4.626	8.541	10.217	8.934	5.803	5.000	5.948	4.413	4.899	3.226	6.015	2.192	1.828	2.154	nan	1.471	1.210	3.600
3205	chr12	16926544	16928940	+	0	NA	intron (NM_009072, intron 2 of 32)	intron (NM_009072, intron 2 of 32)	32764	NM_009072	19878	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	6.070	1.403	1.060	2.463	3.614	1.398	4.013	3.845	3.739	3.245	2.656	3.140	5.368	5.326	4.436	4.718	4.438	5.689	1.309	0.849	0.542	0.673	0.999	0.751	2.835
9274	chr3	51033393	51039442	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-188030	NM_009834	12457	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	6.975	1.228	0.895	2.289	3.233	2.303	2.611	2.847	2.630	4.071	0.631	1.059	3.458	4.565	2.726	2.925	2.150	3.427	1.550	0.986	0.556	2.099	1.226	0.632	5.646
4995	chr14	122357548	122365223	+	0	NA	intron (NM_029556, intron 2 of 7)	ID_B1|SINE|B4	89730	NR_033325	328479	Mm.86095	NR_033325	ENSMUSG00000064052	Gm5089	6530402A20|C030005G22Rik|EG328479	predicted gene 5089	ncRNA	2.791	9.240	3.386	2.772	0.992	0.631	0.963	1.496	2.137	1.970	0.828	1.168	1.215	1.358	nan	2.025	1.480	2.464	1.324	2.010	1.163	1.308	1.591	1.154	1.806
1383	chr10	67586699	67592331	+	0	NA	Intergenic	Intergenic	-40560	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	5.752	1.553	0.872	3.134	1.643	0.733	2.672	3.763	2.931	2.667	1.053	1.006	4.691	4.661	3.840	5.072	3.865	4.998	1.119	0.685	0.435	0.957	0.395	0.320	2.560
12055	chr6	13857487	13861386	+	0	NA	Intergenic	Intergenic	12047	NR_024619	66520	Mm.29615	NM_183258		2610001J05Rik	C79299	RIKEN cDNA 2610001J05 gene	ncRNA	4.643	nan	0.457	1.485	1.142	0.411	6.129	3.658	nan	2.445	5.339	1.901	6.174	3.747	4.805	6.836	4.395	3.906	0.814	0.515	0.345	1.179	0.322	0.242	2.655
137	chr1	40297631	40300748	+	0	NA	intron (NM_001123382, intron 6 of 10)	intron (NM_001123382, intron 6 of 10)	-25438	NM_133193	107527	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	2.256	1.142	0.484	1.075	0.475	0.240	1.305	1.821	1.953	1.580	2.293	0.479	2.613	1.415	2.429	4.981	2.619	3.128	0.737	0.484	0.144	0.526	0.395	0.262	2.170
15402	chr9	96651698	96657066	+	0	NA	Intergenic	Intergenic	-22879	NM_053268	114713	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	8.616	12.238	5.618	7.207	4.473	2.312	7.121	8.424	7.400	7.593	9.708	4.551	7.099	9.279	8.218	10.685	5.265	9.466	1.801	1.122	0.688	1.853	1.115	0.964	14.580
1414	chr10	70620063	70622904	+	0	NA	intron (NR_045291, intron 3 of 5)	intron (NR_045291, intron 3 of 5)	-22192	NM_178621	70911	Mm.19825	NM_178621	ENSMUSG00000037747	Phyhipl	4921522K17Rik|AI267048	phytanoyl-CoA hydroxylase interacting protein-like	protein-coding	6.373	1.733	0.385	4.207	0.764	0.731	4.562	4.003	2.338	3.571	0.350	0.441	6.178	3.074	5.017	6.045	4.387	4.704	2.217	0.679	1.552	2.792	1.422	2.190	8.165
14763	chr8	126697580	126698720	+	0	NA	Intergenic	Intergenic	-104714	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	5.214	nan	1.766	1.597	3.555	1.988	4.079	4.305	3.355	3.063	1.438	1.962	4.924	3.915	3.030	4.826	4.562	nan	1.657	3.433	4.566	nan	2.515	nan	3.487
4504	chr14	21363179	21365804	+	0	NA	intron (NM_001243041, intron 7 of 10)	IAPEz-int|LTR|ERVK	-135279	NM_001205241	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	5.483	10.458	4.171	6.067	4.239	4.048	4.006	5.467	nan	8.829	4.519	2.475	4.371	5.514	4.674	6.058	3.519	5.201	4.437	2.037	3.721	3.832	3.020	4.296	8.977
8059	chr2	27785596	27795785	+	0	NA	Intergenic	Intergenic	80107	NM_001290482	20181	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	1.531	0.785	0.386	2.424	1.032	0.570	1.907	2.087	nan	2.478	0.687	0.619	5.550	3.326	2.439	6.230	2.384	2.319	0.757	0.464	0.311	0.767	0.785	0.547	5.224
7443	chr18	83994142	83998210	+	0	NA	Intergenic	Intergenic	90386	NM_001081300	110796	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	7.764	0.503	0.448	2.321	5.496	2.016	1.149	4.238	5.993	8.758	1.618	1.020	2.119	3.727	1.954	2.111	2.400	4.838	1.585	1.268	0.551	1.180	0.885	0.584	6.149
666	chr1	136679509	136682273	+	0	NA	Intergenic	RSINE1|SINE|B4	-2505	NR_045324	100503460	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	7.784	1.210	0.681	4.917	3.272	1.320	4.660	4.995	6.054	8.534	3.806	1.762	6.339	7.864	5.519	8.674	6.336	6.925	0.523	0.859	0.623	0.696	0.165	0.098	4.865
14180	chr8	42113185	42114753	+	0	NA	Intergenic	RSINE1|SINE|B4	286702	NR_045497	69966	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA	1.991	0.430	0.811	2.599	3.789	3.020	1.522	1.198	2.458	2.524	0.910	1.389	3.114	3.680	0.942	1.464	2.594	2.180	1.071	2.060	1.130	0.550	0.678	0.984	nan
13299	chr7	75550551	75556057	+	0	NA	intron (NM_029332, intron 2 of 36)	intron (NM_029332, intron 2 of 36)	97770	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.547	0.865	0.416	nan	0.156	0.045	0.632	0.504	0.249	0.246	0.289	0.143	0.448	0.205	0.419	nan	0.518	0.506	4.072	2.597	1.542	4.374	2.914	2.304	nan
8650	chr2	128217519	128219633	+	0	NA	Intergenic	MIRb|SINE|MIR	91001	NM_001284410	12125	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	5.783	3.536	2.472	2.494	3.942	2.369	5.514	3.189	4.833	4.997	5.211	2.678	3.248	5.572	3.359	2.988	4.178	3.277	nan	1.549	0.751	0.867	0.577	0.472	3.263
11478	chr5	100405871	100409121	+	0	NA	intron (NM_026969, intron 2 of 27)	intron (NM_026969, intron 2 of 27)	8738	NM_026969	69162	Mm.18634	NM_026969	ENSMUSG00000035325	Sec31a	1810024J13Rik|ABP125|ABP130|AU042160|HSPC275|Sec31l1	Sec31 homolog A (S. cerevisiae)	protein-coding	8.983	13.321	6.692	8.038	9.389	7.092	11.836	8.416	5.406	11.859	8.650	5.844	7.039	10.180	8.356	9.269	9.260	6.723	7.591	6.084	8.091	6.874	9.032	10.441	12.299
8880	chr2	156888695	156905883	+	0	NA	Intergenic	Intergenic	-10211	NM_029983	77799	Mm.29264	NM_029983	ENSMUSG00000027636	Sla2	A930009E21Rik|AI430952|SLAP-2|SLAP2	Src-like-adaptor 2	protein-coding	5.834	1.622	0.667	7.535	3.010	1.699	3.991	3.279	nan	5.783	1.656	1.153	nan	nan	3.929	4.646	2.316	6.820	nan	1.308	1.147	2.453	1.201	1.130	10.972
3794	chr12	118658493	118662670	+	0	NA	Intergenic	Intergenic	-130388	NR_045947	100384890	Mm.484658	NR_045947		D230030E09Rik	Npe	Riken cDNA D230030E09 gene	ncRNA	4.000	0.426	0.400	0.895	0.927	0.926	4.687	1.808	1.845	2.095	1.044	0.757	4.864	3.090	3.801	nan	6.091	2.710	0.539	0.662	0.411	0.742	0.560	0.305	nan
1074	chr10	5958226	5961100	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-37263	NM_019958	56533	Mm.44606	NM_019958	ENSMUSG00000019775	Rgs17	6430507P11Rik|Rgsz2	regulator of G-protein signaling 17	protein-coding	6.484	10.019	2.903	9.397	5.235	4.965	5.456	6.127	4.491	17.520	5.948	2.571	6.179	6.830	6.630	8.024	4.240	8.165	3.548	1.299	4.015	4.176	3.397	6.007	13.681
13510	chr7	108174401	108180964	+	0	NA	Intergenic	L1_Mus3|LINE|L1	-4940	NM_146496	258489	Mm.377531	NM_146496	ENSMUSG00000096068	Olfr486	MOR204-19	olfactory receptor 486	protein-coding	7.063	1.359	0.911	4.084	3.448	1.927	4.194	7.550	4.030	4.979	4.571	1.811	6.814	7.909	5.052	6.167	7.862	nan	nan	1.799	1.747	0.952	1.090	0.908	7.650
3884	chr13	23775166	23778193	+	0	NA	Intergenic	Intergenic	-5862	NM_001029935	214158	Mm.314151	NM_001029935	ENSMUSG00000064140	Trim38	Gm23	tripartite motif-containing 38	protein-coding	5.480	8.406	3.280	6.857	3.504	1.596	3.055	5.101	4.384	4.379	5.161	3.305	4.394	7.072	5.736	6.270	3.905	5.526	3.728	2.222	1.775	3.186	1.798	1.388	5.532
12327	chr6	72497208	72503571	+	0	NA	Intergenic	B3|SINE|B2	-44002	NM_007599	12332	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	6.970	8.163	3.473	5.972	5.930	3.291	2.594	3.043	3.707	4.496	9.666	4.250	3.554	6.452	3.680	4.948	2.850	3.910	1.902	2.479	1.867	1.848	2.091	1.160	4.850
7546	chr19	9971782	9975035	+	0	NA	Intergenic	Lx9|LINE|L1	-7192	NR_073181	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	6.443	9.123	4.136	4.092	2.323	1.086	4.576	6.517	nan	4.092	4.898	2.485	3.459	5.652	6.305	6.896	5.390	5.549	2.220	1.955	1.058	3.720	2.923	1.493	8.893
2576	chr11	86453601	86468870	+	0	NA	intron (NR_030571, intron 1 of 2)	RMER2|LTR|ERV1	-23422	NM_029788	76892	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding	7.784	3.784	2.178	5.537	9.738	7.440	8.098	7.208	9.080	8.431	10.981	8.546	8.212	10.202	6.542	5.915	6.372	8.591	2.042	1.831	1.733	nan	1.230	1.302	nan
4938	chr14	104921221	104922138	+	0	NA	intron (NR_015593, intron 3 of 5)	intron (NR_015593, intron 3 of 5)	192997	NR_040628	100502987	Mm.124957	NR_040628		Gm17066	-	predicted gene 17066	ncRNA	4.775	12.085	2.762	6.889	1.288	1.112	3.877	4.927	3.524	8.105	3.599	2.304	3.606	4.731	6.880	8.359	0.970	5.551	3.053	1.055	2.807	6.270	2.577	3.523	13.141
8347	chr2	72345263	72347219	+	0	NA	intron (NM_023057, intron 2 of 19)	intron (NM_023057, intron 2 of 19)	60540	NM_178084	65964	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	2.206	0.523	0.552	0.249	0.242	0.197	2.651	0.823	0.387	0.297	0.305	0.178	0.956	1.587	3.178	3.393	1.699	1.235	1.060	0.343	0.498	1.294	0.622	0.869	4.942
6125	chr16	52436678	52440079	+	0	NA	intron (NM_009655, intron 1 of 15)	intron (NM_009655, intron 1 of 15)	14703	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	4.768	0.830	0.591	2.746	4.855	2.646	3.987	7.104	3.562	3.457	2.278	4.754	5.730	5.173	4.603	4.986	4.159	4.429	1.343	1.377	1.035	1.460	1.494	1.176	2.695
3287	chr12	36552546	36554745	+	0	NA	intron (NM_178629, intron 9 of 9)	RMER4B|LTR|ERVK	138029	NR_037309	100499526		NR_037309	ENSMUSG00000092917	Mir3472	mmu-mir-3472	microRNA 3472	ncRNA	6.294	nan	0.467	1.988	1.348	0.165	3.343	2.826	nan	1.931	5.644	3.462	2.043	2.518	4.681	2.790	2.553	3.922	nan	0.718	0.400	0.291	0.282	0.171	4.845
14698	chr8	123044067	123045089	+	0	NA	TTS (NR_045268)	TTS (NR_045268)	2003	NR_045268	100503178	Mm.294938	NR_045268	ENSMUSG00000099881	2810013P06Rik	-	RIKEN cDNA 2810013P06 gene	ncRNA	1.493	1.087	0.580	nan	2.706	1.944	1.170	3.180	0.943	1.287	0.615	0.557	1.664	2.524	2.478	2.049	1.552	2.258	4.592	2.681	4.614	7.995	3.386	4.509	3.665
10705	chr4	135281244	135288216	+	0	NA	Intergenic	Intergenic	-11970	NM_013885	29876	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	nan	0.700	0.224	0.894	0.605	0.348	1.933	4.136	nan	0.679	0.621	0.449	1.639	1.761	1.970	2.001	0.806	nan	5.645	2.614	2.818	8.906	nan	4.010	1.452
15163	chr9	61793850	61796287	+	0	NA	Intergenic	RMER5|LTR|ERV1	119442	NM_018853	56040	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	6.230	8.949	3.562	3.803	2.598	1.463	6.514	7.038	3.018	3.987	4.608	3.283	5.388	6.820	6.213	7.795	5.796	5.634	4.622	4.562	3.417	5.624	3.465	2.781	9.119
1601	chr10	92754308	92760464	+	0	NA	Intergenic	Intergenic	-34968	NM_008682	17997	Mm.2998	NM_008682	ENSMUSG00000019988	Nedd1	-	neural precursor cell expressed, developmentally down-regulated gene 1	protein-coding	5.030	2.598	1.666	5.435	2.589	1.832	1.447	2.523	2.692	3.090	2.331	1.750	1.736	nan	2.629	2.895	1.706	nan	0.849	1.256	1.018	nan	nan	0.598	3.014
11828	chr5	137006070	137017267	+	0	NA	Intergenic	B1_Mur1|SINE|Alu	-18627	NM_001039385	381677	Mm.389697	NM_001039385	ENSMUSG00000037428	Vgf	Gm1052	VGF nerve growth factor inducible	protein-coding	3.534	1.424	0.753	2.420	2.830	1.392	5.984	4.946	3.721	2.884	3.639	2.938	4.901	5.501	6.421	5.115	3.546	4.884	1.030	0.953	0.646	1.156	nan	0.460	3.772
12494	chr6	94231212	94237770	+	0	NA	intron (NR_130996, intron 1 of 1)	intron (NR_130996, intron 1 of 1)	2951	NR_130996	78178	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	6.005	0.929	0.364	5.150	3.855	3.059	10.387	7.007	4.154	7.676	3.087	2.202	7.827	9.575	nan	nan	6.898	8.053	nan	nan	1.176	1.650	1.106	1.429	9.727
323	chr1	75528181	75531781	+	0	NA	exon (NM_027886, exon 16 of 25)	exon (NM_027886, exon 16 of 25)	8452	NM_027886	71728	Mm.312650	NM_027886	ENSMUSG00000026213	Stk11ip	1200014D22Rik|BB131189|LIP1|LKB1IP	serine/threonine kinase 11 interacting protein	protein-coding	0.783	1.774	1.187	0.423	0.386	0.140	0.544	0.407	0.337	0.347	0.242	0.269	0.154	0.309	0.387	nan	0.478	nan	7.369	nan	2.374	4.026	8.360	7.193	nan
6904	chr17	84352760	84358492	+	0	NA	intron (NM_183021, intron 26 of 37)	intron (NM_183021, intron 26 of 37)	110582	NM_183021	240174	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	5.408	3.240	0.841	4.029	1.410	0.645	4.101	4.152	nan	3.370	2.272	2.471	4.212	3.583	3.780	5.238	2.535	4.071	3.188	2.401	1.604	4.827	2.387	1.510	3.772
9443	chr3	88312892	88319569	+	0	NA	intron (NM_009836, intron 10 of 13)	B1_Mus1|SINE|Alu	-8793	NM_020003	56700	Mm.439922	NM_020003	ENSMUSG00000001418	Glmp	0610031J06Rik|AB027141|NCU-G1	glycosylated lysosomal membrane protein	protein-coding	9.820	3.894	2.038	8.632	8.267	5.618	14.143	9.008	6.067	8.143	7.034	4.842	10.306	13.039	9.781	10.273	8.559	10.020	5.980	4.597	4.217	6.520	6.318	5.441	12.708
5292	chr15	72977862	72989823	+	0	NA	intron (NM_029640, intron 8 of 21)	intron (NM_029640, intron 8 of 21)	71970	NM_029640	76510	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	nan	12.987	4.268	3.813	2.870	1.539	3.352	7.628	2.549	2.760	3.923	2.802	4.717	4.269	3.791	3.126	1.895	3.874	4.105	2.004	1.533	6.319	2.840	2.249	3.293
2467	chr11	75335408	75337556	+	0	NA	intron (NM_026653, intron 4 of 16)	intron (NM_026653, intron 4 of 16)	11901	NM_001164223	68275	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding	2.652	1.064	0.668	3.428	2.534	0.894	1.900	1.661	2.679	3.070	0.747	0.660	2.573	4.130	3.024	4.055	2.002	5.121	0.601	0.314	nan	1.027	0.382	0.402	4.720
14806	chr8	129089160	129092413	+	0	NA	intron (NM_029292, intron 2 of 10)	L1Md_F2|LINE|L1	23652	NM_001168369	75453	Mm.286964	NM_029292	ENSMUSG00000056018	Ccdc7b	1700008F21Rik	coiled-coil domain containing 7B	protein-coding	8.135	3.690	1.773	6.933	6.035	3.964	4.670	5.840	5.063	5.681	4.408	2.550	4.793	7.443	6.181	7.335	4.326	7.009	2.502	2.633	1.850	3.270	3.416	nan	7.472
8785	chr2	148503798	148514313	+	0	NA	Intergenic	PB1D11|SINE|Alu	-65520	NM_010740	17064	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	6.681	3.066	1.155	4.628	3.407	2.272	4.549	7.201	3.982	5.044	2.777	1.518	6.008	6.295	5.552	8.555	6.855	5.340	nan	1.433	1.340	2.854	1.814	1.408	6.351
5196	chr15	58020771	58028693	+	0	NA	intron (NM_029418, intron 5 of 5)	intron (NM_029418, intron 5 of 5)	9562	NM_029418	75758	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	0.829	1.095	0.660	nan	0.274	0.235	nan	nan	nan	nan	0.496	0.417	0.392	0.506	0.788	nan	0.880	0.606	5.747	2.964	2.102	5.692	3.686	2.798	0.575
187	chr1	54966962	54970020	+	0	NA	Intergenic	RMER19B|LTR|ERVK	-42104	NM_001081433	329154	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	4.342	10.882	4.829	3.721	1.885	1.032	1.563	1.286	2.535	2.251	1.496	0.980	1.716	2.623	2.701	nan	2.726	3.073	0.895	1.382	0.945	1.014	0.423	0.342	2.537
8968	chr2	164678853	164686599	+	0	NA	Intergenic	Intergenic	-2381	NM_001012704	408190	Mm.376205	NM_001012704	ENSMUSG00000067704	Wfdc13	Wfdc13l1	WAP four-disulfide core domain 13	protein-coding	3.763	2.363	1.329	3.244	2.051	1.248	1.533	8.804	2.473	2.668	1.349	1.173	3.656	2.600	3.003	3.486	3.261	nan	nan	1.179	1.312	0.909	0.953	0.926	nan
6408	chr17	25376319	25377660	+	0	NA	exon (NM_021415, exon 34 of 35)	exon (NM_021415, exon 34 of 35)	6436	NM_012034	26945	Mm.180108	NM_012034	ENSMUSG00000033200	Tpsg1	Prss31|Tmt	tryptase gamma 1	protein-coding	4.614	8.792	2.440	7.250	1.627	1.057	5.090	3.944	3.166	7.586	4.530	2.030	5.362	5.583	7.188	7.874	3.531	6.179	5.917	2.362	3.869	7.048	2.980	5.518	12.996
1283	chr10	51997294	51998801	+	0	NA	Intergenic	L1Md_A|LINE|L1	-24455	NM_001300957	215031	Mm.87237	NM_153786	ENSMUSG00000049641	Vgll2	C130057C21Rik|VITO-1|Vito1|vgl-2	vestigial like family member 2	protein-coding	6.846	nan	0.433	3.078	4.791	4.138	4.500	6.338	3.881	3.468	3.853	2.490	3.620	5.451	3.798	4.852	6.869	4.605	nan	1.155	1.008	0.638	1.440	1.599	6.873
9753	chr3	121514176	121519960	+	0	NA	intron (NM_145394, intron 5 of 14)	RMER6B|LTR|ERVK	15276	NM_145394	213603	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	4.872	3.819	1.318	6.508	4.048	2.364	4.747	4.979	5.773	nan	3.287	2.501	6.506	6.608	5.626	nan	5.117	7.656	2.215	1.311	1.153	2.853	nan	1.992	nan
6909	chr17	84499294	84503954	+	0	NA	Intergenic	Lx9|LINE|L1	-10271	NM_177606	213556	Mm.215159	NM_177606	ENSMUSG00000040852	Plekhh2	AI256725|E030001K05|mKIAA2028	pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	protein-coding	5.972	3.768	1.389	4.798	2.950	2.004	4.349	3.427	nan	4.119	4.354	1.090	3.203	5.199	3.693	4.751	5.282	3.516	0.782	1.585	1.176	0.998	1.321	0.739	6.054
212	chr1	58798898	58801259	+	0	NA	intron (NM_009812, intron 1 of 8)	L1_Mur3|LINE|L1	-2424	NM_001277926	12370	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	6.211	5.124	2.102	4.201	4.090	4.552	2.084	3.567	4.371	3.690	7.404	3.582	2.943	3.973	3.230	3.521	3.125	3.519	1.178	1.063	1.395	1.097	0.528	0.717	3.394
15262	chr9	70104717	70112598	+	0	NA	intron (NM_029784, intron 4 of 8)	intron (NM_029784, intron 4 of 8)	32900	NM_029784	76886	Mm.44355	NM_029784	ENSMUSG00000032224	Fam81a	6430514L14Rik	family with sequence similarity 81, member A	protein-coding	5.431	4.714	1.765	3.689	1.809	0.857	3.406	3.940	4.105	3.721	4.218	3.228	3.941	4.060	nan	5.116	2.928	5.724	nan	1.828	0.861	3.465	1.682	0.875	5.815
10828	chr4	141341169	141351376	+	0	NA	Intergenic	Intergenic	-21920	NM_001085513	277743	Mm.294614	NM_001085513	ENSMUSG00000006218	Fam131c	Gm693	family with sequence similarity 131, member C	protein-coding	5.318	5.677	2.352	4.896	3.651	2.481	4.492	5.705	nan	6.388	2.642	1.743	5.545	6.430	5.893	7.145	4.302	nan	5.713	1.703	2.017	5.627	nan	4.563	7.537
9921	chr4	8888004	8890773	+	0	NA	Intergenic	Intergenic	198982	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.941	4.935	3.065	1.148	0.588	0.223	0.145	nan	0.577	0.447	0.427	0.250	0.161	0.318	0.416	0.652	0.518	0.902	2.413	nan	1.053	4.098	2.376	1.435	0.621
3384	chr12	70612679	70618715	+	0	NA	intron (NR_037248, intron 4 of 4)	MIR3|SINE|MIR	162543	NM_028339	72736	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	7.432	8.350	3.829	4.744	4.761	2.657	7.333	5.047	5.480	6.840	3.707	3.585	9.014	9.064	7.632	nan	5.613	7.996	1.366	1.465	1.423	1.344	1.281	1.013	12.128
12409	chr6	87491470	87493063	+	0	NA	intron (NM_001286610, intron 1 of 9)	intron (NM_001286610, intron 1 of 9)	4061	NR_104483	232201	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	4.838	8.223	3.374	2.869	1.996	0.840	3.394	4.187	2.396	3.598	1.673	0.752	3.042	4.814	4.477	4.939	3.273	3.926	nan	1.158	0.721	0.556	0.436	0.362	4.712
6934	chr17	86565787	86567420	+	0	NA	intron (NM_011104, intron 11 of 14)	intron (NM_011104, intron 11 of 14)	-187261	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	11.032	13.542	3.368	16.137	6.044	3.569	11.637	10.832	nan	17.277	8.289	5.351	9.376	13.567	13.610	15.456	8.950	10.935	6.872	2.783	3.610	7.833	4.444	7.240	22.982
1331	chr10	59488784	59493091	+	0	NA	intron (NM_001033259, intron 2 of 7)	B1_Mm|SINE|Alu	-49158	NM_010959	18302	Mm.123013	NM_010959	ENSMUSG00000009654	Oit3	EF-9|LZP	oncoprotein induced transcript 3	protein-coding	0.977	4.339	1.877	1.465	0.391	0.234	0.700	1.740	1.582	1.060	1.180	2.441	0.757	1.322	0.972	0.971	0.755	1.022	7.242	2.879	2.021	8.154	4.045	2.634	nan
9661	chr3	105710632	105722254	+	0	NA	exon (NM_001163356, exon 2 of 2)	exon (NM_001163356, exon 2 of 2)	10985	NM_001163356	109050	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	5.455	1.355	0.698	3.461	3.972	2.930	5.226	3.148	4.162	4.893	1.688	0.571	6.773	7.826	nan	6.052	5.265	5.358	0.642	0.789	0.882	0.560	0.542	0.535	6.773
9228	chr3	35635526	35636606	+	0	NA	intron (NR_040748, intron 12 of 18)	IAPLTR2a|LTR|ERVK	30097	NR_040748	625963	Mm.251506	NR_040748	ENSMUSG00000105662	Gm6639	-	predicted gene 6639	ncRNA	1.168	0.725	0.254	1.163	0.690	0.896	1.259	1.512	2.489	1.409	2.590	0.392	2.748	3.835	1.525	2.206	1.189	2.456	nan	0.154	0.315	nan	0.124	0.164	0.742
5108	chr15	35213397	35216387	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	-59086	NM_019635	56274	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	6.512	0.740	0.643	2.569	2.263	1.010	3.733	1.965	2.896	3.490	0.667	0.276	9.452	6.635	3.956	2.660	4.703	4.542	0.819	0.367	0.164	nan	0.339	0.296	7.318
2383	chr11	69725600	69728424	+	0	NA	Intergenic	B1_Mur3|SINE|Alu	-30914	NM_001159503	619441	Mm.8983	NM_001034097	ENSMUSG00000018752	Tnfsfm13	Tnfsf12-Tnfsf13|Tnfsf12Tnfsf13|Tnfsf12tnfsf13|Twe-pril	tumor necrosis factor (ligand) superfamily, membrane-bound member 13	protein-coding	5.747	8.641	2.010	6.707	3.148	2.012	5.272	5.731	3.395	7.621	3.452	1.926	6.418	7.619	7.085	8.571	4.624	6.378	2.502	1.393	1.866	3.443	nan	1.427	8.939
8392	chr2	78708177	78711023	+	0	NA	Intergenic	Intergenic	-159447	NM_009454	22193	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	6.179	6.524	2.664	6.944	3.740	2.896	5.949	6.213	4.663	11.011	3.967	2.841	6.410	5.554	7.169	8.181	5.633	6.657	3.992	2.172	3.257	5.074	2.910	4.966	12.809
1305	chr10	57840225	57842079	+	0	NA	Intergenic	MTB_Mm|LTR|ERVL-MaLR	46608	NM_020561	57319	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	5.184	1.312	1.514	2.024	1.862	1.103	2.463	3.875	2.393	2.926	1.687	1.392	1.929	4.293	2.858	2.024	3.107	3.327	nan	1.615	0.826	0.900	1.281	0.791	nan
12111	chr6	30574232	30580960	+	0	NA	intron (NM_027926, intron 4 of 10)	RSINE1|SINE|B4	9227	NM_027926	71791	Mm.105759	NM_027926	ENSMUSG00000039070	Cpa4	1110019K20Rik|AV009555	carboxypeptidase A4	protein-coding	0.281	0.882	0.227	0.476	0.283	0.057	0.415	0.510	0.340	0.403	1.120	0.478	0.144	0.315	0.382	nan	0.351	nan	5.968	2.870	2.193	6.685	4.476	2.849	0.482
14657	chr8	120324010	120327357	+	0	NA	Intergenic	Intergenic	-97453	NR_110496	434353	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	7.349	5.690	2.351	4.614	3.521	2.445	6.376	10.647	5.646	6.427	5.947	3.142	7.736	8.518	7.503	9.802	7.028	6.562	2.711	2.793	2.297	3.619	2.463	2.221	9.576
961	chr1	183055928	183058350	+	0	NA	Intergenic	ID_B1|SINE|B4	90418	NM_001278220	68897	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched RND transporter family member 1	protein-coding	4.678	1.602	0.773	1.412	5.352	4.864	3.579	3.270	3.501	4.097	4.745	4.889	4.082	5.381	2.750	1.611	2.025	2.915	0.958	0.644	0.708	0.690	0.330	0.583	1.349
12825	chr6	142293690	142295484	+	0	NA	intron (NM_130861, intron 1 of 14)	MTD|LTR|ERVL-MaLR	-3838	NM_010491	15874	Mm.415	NM_010491	ENSMUSG00000041681	Iapp	DAP	islet amyloid polypeptide	protein-coding	4.005	7.098	4.063	5.803	2.382	1.646	6.257	6.358	4.277	4.627	6.513	3.394	7.374	6.215	6.634	8.542	6.830	4.689	nan	2.237	0.780	3.413	2.731	2.039	5.643
8246	chr2	52457253	52459062	+	0	NA	intron (NM_001285426, intron 9 of 13)	intron (NM_001285426, intron 9 of 13)	-33283	NM_182994	75423	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	3.299	0.808	0.429	2.532	3.185	1.364	4.751	7.492	2.914	3.949	0.699	0.726	4.457	5.218	5.850	7.860	7.695	2.925	2.259	1.401	1.457	2.830	1.611	0.789	4.668
4539	chr14	25579637	25585751	+	0	NA	intron (NM_001310666, intron 6 of 23)	intron (NM_001310666, intron 6 of 23)	-4110	NR_033492	77592	Mm.444871	NM_175264		4931406H21Rik	-	RIKEN cDNA 4931406H21 gene	ncRNA	0.432	0.568	0.322	0.587	0.188	0.049	0.367	0.507	0.322	0.218	0.398	0.263	0.136	0.263	0.323	nan	nan	nan	6.943	1.768	1.161	6.007	3.920	2.811	0.648
11885	chr5	140345819	140348767	+	0	NA	intron (NM_172277, intron 7 of 10)	intron (NM_172277, intron 7 of 10)	15371	NM_008637	17766	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	6.718	0.461	0.405	3.566	5.011	3.010	5.562	1.642	3.725	7.982	0.686	0.748	2.543	6.340	2.656	7.552	7.695	5.128	0.755	1.123	0.648	0.278	nan	0.900	7.734
6378	chr17	23907422	23909051	+	0	NA	Intergenic	Intergenic	-9222	NM_001077633	620253	Mm.390964	NM_001077633	ENSMUSG00000057417	Dcpp3	Dcpp-3|EG620253|SPT-3	demilune cell and parotid protein 3	protein-coding	5.012	8.405	2.982	5.557	4.007	2.667	5.001	2.999	2.961	6.878	2.865	2.030	3.603	6.858	4.800	nan	2.611	4.373	5.642	2.998	3.361	4.693	4.391	3.897	6.981
2686	chr11	95573013	95576533	+	0	NA	intron (NM_033217, intron 3 of 5)	intron (NM_033217, intron 3 of 5)	12925	NM_033217	18053	Mm.283893	NM_033217	ENSMUSG00000000120	Ngfr	LNGFR|Tnfrsf16|p75|p75NGFR|p75NTR	nerve growth factor receptor (TNFR superfamily, member 16)	protein-coding	7.208	7.943	2.733	6.273	4.930	3.146	5.163	5.896	4.127	10.738	4.937	3.284	4.505	7.450	5.367	6.730	5.308	6.466	5.353	nan	3.559	5.030	nan	4.653	7.570
10371	chr4	108780857	108782366	+	0	NA	promoter-TSS (NM_001347163)	promoter-TSS (NM_001347163)	-523	NM_001347163	230597	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	1.882	2.593	2.145	3.557	2.941	1.646	1.579	1.824	2.772	2.835	1.467	1.006	2.925	3.966	2.899	2.979	2.378	3.792	1.492	1.283	0.081	0.865	0.517	0.317	1.865
6803	chr17	66943435	66946767	+	0	NA	intron (NM_008984, intron 9 of 30)	intron (NM_008984, intron 9 of 30)	81134	NR_049205	100885844		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	2.139	0.428	0.241	0.414	0.541	0.268	1.848	4.736	nan	0.747	0.477	0.652	1.583	nan	1.784	2.624	2.733	1.396	0.587	0.795	0.378	0.433	0.604	0.230	1.294
3234	chr12	25696322	25698154	+	0	NA	Intergenic	Intergenic	513267	NR_131149	629481	Mm.390460	NR_131149		Gm29687	-	predicted gene, 29687	ncRNA	4.434	2.949	1.662	2.643	4.223	2.915	3.107	1.874	2.031	2.434	1.029	1.103	2.046	2.829	2.813	2.362	1.684	2.607	2.796	2.340	1.855	3.756	4.081	3.570	4.645
6465	chr17	28081767	28085455	+	0	NA	Intergenic	Intergenic	-2972	NM_001085555	21463	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	5.497	0.650	0.394	4.007	4.512	3.600	7.509	6.562	3.763	4.237	1.636	1.616	4.874	7.663	6.121	7.966	6.479	4.998	1.196	1.099	1.219	0.946	1.662	1.099	6.858
5365	chr15	76596843	76600644	+	0	NA	intron (NM_001164173, intron 25 of 36)	intron (NM_001164173, intron 25 of 36)	8848	NM_053193	94230	Mm.45141	NM_053193	ENSMUSG00000034022	Cpsf1	-	cleavage and polyadenylation specific factor 1	protein-coding	4.199	12.209	8.285	nan	2.176	1.283	nan	4.946	1.440	nan	nan	0.676	3.292	3.449	2.439	2.430	3.874	2.290	1.497	1.625	1.349	nan	1.073	0.981	2.786
8802	chr2	151427749	151430717	+	0	NA	intron (NR_131976, intron 1 of 6)	RMER3D-int|LTR|ERVK	3216	NR_131976	100125594	Mm.381283	NR_131976	ENSMUSG00000087495	LOC100125594	-	uncharacterized LOC100125594	ncRNA	2.136	0.654	0.415	0.511	0.253	0.160	1.135	1.668	0.642	0.730	0.313	0.183	0.562	0.594	2.347	1.812	2.117	1.399	6.175	2.617	1.636	7.514	3.758	2.365	4.226
15842	chrX	148235428	148239293	+	0	NA	intron (NM_011022, intron 4 of 6).2	intron (NM_011022, intron 4 of 6).2	56636	NM_001081648	434864	Mm.484933	NM_001081648	ENSMUSG00000072930	Gm15107	OTTMUSG00000019001|Ott-like	predicted gene 15107	protein-coding	6.652	6.931	2.279	4.945	3.285	1.886	4.539	4.912	3.394	5.099	4.907	2.390	4.501	6.615	4.979	5.830	3.525	4.579	3.929	2.451	1.493	3.270	3.239	1.737	5.949
12512	chr6	97240906	97245815	+	0	NA	intron (NM_001081157, intron 2 of 2)	intron (NM_001081157, intron 2 of 2)	9420	NM_001081157	320502	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	6.176	1.867	0.714	4.935	4.521	1.826	8.558	10.666	6.476	6.209	5.077	4.320	9.463	10.403	10.581	11.643	6.246	8.248	nan	nan	0.364	1.655	0.836	0.538	7.452
4916	chr14	100181688	100185796	+	0	NA	Intergenic	RSINE1|SINE|B4	-33946	NM_010636	16597	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	5.344	nan	0.264	3.982	3.160	1.454	4.130	6.125	5.723	7.580	1.251	0.996	6.321	7.324	4.088	6.378	4.555	7.274	0.754	0.518	0.358	0.582	0.810	0.548	4.226
14714	chr8	124427928	124433133	+	0	NA	intron (NM_171824, intron 1 of 6)	(TAA)n|Simple_repeat|Simple_repeat	3406	NM_171824	209966	Mm.234233	NM_171824	ENSMUSG00000050751	Pgbd5	2900019M05Rik|AI854313	piggyBac transposable element derived 5	protein-coding	3.768	4.827	1.610	nan	3.075	2.232	nan	5.636	2.702	4.598	1.108	1.215	3.373	7.197	3.006	3.904	3.199	3.946	nan	1.294	1.602	4.540	1.763	nan	4.930
5093	chr15	31272133	31273828	+	0	NA	intron (NM_146057, intron 3 of 3)	intron (NM_146057, intron 3 of 3)	48595	NM_146057	223453	Mm.222867	NM_146057	ENSMUSG00000039168	Dap	4921531N22Rik|AI789753|AU040360	death-associated protein	protein-coding	7.731	3.850	2.409	3.257	2.542	1.040	4.530	4.743	3.368	3.616	1.738	1.371	2.889	4.259	5.067	4.973	4.293	4.552	3.285	0.898	0.723	2.684	2.127	1.399	4.207
3928	chr13	31658575	31662173	+	0	NA	Intergenic	Intergenic	34558	NM_010225	14238	Mm.125548	NM_010225	ENSMUSG00000038402	Foxf2	FREAC2|Fkh20|LUN	forkhead box F2	protein-coding	2.907	1.295	0.627	1.433	2.469	1.490	5.087	6.001	3.021	3.005	4.334	4.532	4.744	6.225	4.589	6.219	3.017	3.547	0.565	0.517	0.613	0.518	0.363	0.477	3.864
9769	chr3	122101728	122113111	+	0	NA	intron (NM_007378, intron 14 of 49)	intron (NM_007378, intron 14 of 49)	62959	NM_007378	11304	Mm.3918	NM_007378	ENSMUSG00000028125	Abca4	AW050280|Abc10|Abcr|D430003I15Rik|RmP	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding	1.929	13.282	7.494	2.538	4.602	2.446	1.856	2.301	4.201	nan	3.289	2.975	1.327	2.974	1.778	nan	0.904	3.722	1.423	1.660	1.579	1.350	nan	2.077	nan
8870	chr2	156136984	156139140	+	0	NA	intron (NM_010911, intron 4 of 12)	B2_Mm2|SINE|B2	-6091	NM_001164216	67067	Mm.371623	NM_025946	ENSMUSG00000067847	Romo1	2010100O12Rik|AI853864	reactive oxygen species modulator 1	protein-coding	nan	17.054	5.506	8.056	4.578	3.310	5.933	9.629	nan	nan	5.168	3.010	8.970	7.813	8.176	12.389	6.694	nan	5.397	1.831	3.490	5.962	3.569	4.636	15.504
9951	chr4	15192138	15197024	+	0	NA	Intergenic	L1Md_F3|LINE|L1	-45450	NM_178617	69352	Mm.389031	NM_178617	ENSMUSG00000040536	Necab1	1700003H21Rik|Efcbp1|STIP-1	N-terminal EF-hand calcium binding protein 1	protein-coding	4.876	7.108	2.090	4.839	1.460	0.861	3.938	3.733	2.823	6.455	2.464	0.870	3.478	3.504	5.803	6.286	2.455	5.396	3.969	1.737	2.017	5.906	2.009	2.399	7.465
12368	chr6	85182640	85183928	+	0	NA	Intergenic	Intergenic	-4647	NM_010131	13796	Mm.391473	NM_010131	ENSMUSG00000033726	Emx1	-	empty spiracles homeobox 1	protein-coding	1.180	0.678	0.499	1.412	1.346	0.793	2.824	2.793	2.366	1.559	0.228	0.829	1.443	3.719	1.917	3.111	1.163	1.969	nan	0.667	0.518	0.957	0.971	0.595	1.720
10733	chr4	136907222	136911169	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	-10351	NM_007572	12259	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	2.956	1.795	1.089	2.291	4.186	3.314	1.415	2.483	2.414	2.080	1.502	1.188	1.605	3.653	2.247	2.200	1.829	2.736	1.849	1.745	1.067	1.104	nan	1.287	1.476
6900	chr17	83975712	83977217	+	0	NA	Intergenic	Intergenic	-22088	NR_130994	78148	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA	4.014	0.617	0.758	1.763	0.936	0.761	4.362	3.195	4.382	3.701	2.524	3.943	4.777	3.978	4.198	5.913	4.045	4.038	0.719	0.419	0.109	0.535	0.787	1.039	6.706
4940	chr14	106076215	106079564	+	0	NA	Intergenic	Intergenic	-28309	NM_198601	212085	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding	2.176	0.620	0.275	1.034	1.182	0.365	2.135	3.918	3.663	3.913	0.627	0.903	4.073	3.182	5.249	6.219	1.715	3.813	0.842	0.386	0.187	0.527	0.645	0.346	1.823
13323	chr7	80913482	80916556	+	0	NA	TTS (NM_019951)	TTS (NM_019951)	-9957	NM_001291280	68039	Mm.22246	NM_026523	ENSMUSG00000025723	Nmb	3110023K12Rik	neuromedin B	protein-coding	3.683	0.717	0.441	3.648	3.157	2.254	1.833	2.281	4.490	6.742	0.865	0.905	5.238	4.815	2.946	3.668	2.736	6.471	1.232	0.944	0.795	1.237	1.913	0.896	3.724
477	chr1	97560721	97565083	+	0	NA	Intergenic	Intergenic	99116	NM_133825	52392	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	4.775	9.184	4.019	4.348	1.651	0.738	2.118	1.483	2.286	2.589	0.949	0.681	1.292	1.852	2.421	nan	2.315	3.271	nan	2.550	1.714	nan	1.345	1.040	nan
7233	chr18	50833723	50835943	+	0	NA	Intergenic	Intergenic	-266134	NM_026108	67365	Mm.158150	NM_026108	ENSMUSG00000048875	Hdhd1a	1700121L12Rik|GS1|Hdhd1|Pudp	haloacid dehalogenase-like hydrolase domain containing 1A	protein-coding	1.936	0.483	0.840	0.622	0.084	0.159	1.359	1.639	0.687	0.469	0.487	0.134	1.067	1.031	0.971	1.097	2.110	nan	2.695	3.307	1.017	2.498	2.161	1.438	0.168
6591	chr17	35369959	35373389	+	0	NA	Intergenic	IAPEz-int|LTR|ERVK	-7943	NM_001143689	15015	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	12.380	17.915	10.490	6.657	7.023	5.097	13.754	7.389	4.832	7.230	8.934	4.072	8.264	13.086	7.312	9.664	7.577	5.682	3.971	6.438	5.475	3.382	6.088	5.350	14.132
1338	chr10	60608319	60610940	+	0	NA	intron (NR_045556, intron 4 of 68)	(CAAT)n|Simple_repeat|Simple_repeat	86861	NM_001252635	22295	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	13.344	9.656	5.054	7.353	9.517	6.258	8.521	8.271	4.231	10.859	8.263	4.508	4.551	9.726	5.411	8.287	9.631	6.010	nan	5.375	6.374	4.232	6.362	6.399	13.475
15861	chrX	160843880	160845148	+	0	NA	intron (NM_001024624, intron 10 of 18)	intron (NM_001024624, intron 10 of 18)	62538	NM_001001496	414089	Mm.123113	NM_001001496	ENSMUSG00000055691	Gja6	A530015O12Rik|Cnx33|Cx33|Gja-6	gap junction protein, alpha 6	protein-coding	2.667	1.260	0.182	1.499	1.249	0.159	2.941	3.451	1.765	2.380	3.493	1.180	3.386	2.717	2.778	3.610	1.626	3.098	0.659	0.226	0.288	0.350	0.058	0.557	2.691
10105	chr4	56766783	56774930	+	0	NA	intron (NM_026079, intron 27 of 36)	intron (NM_026079, intron 27 of 36)	27434	NM_009611	11470	Mm.30959	NM_009611	ENSMUSG00000070979	Actl7a	Tact2	actin-like 7a	protein-coding	3.998	nan	0.750	2.230	2.804	1.515	nan	2.495	3.899	6.071	1.185	0.568	6.056	6.254	4.208	5.683	3.694	4.406	nan	0.620	0.483	0.566	0.384	0.306	6.766
12617	chr6	115412461	115422553	+	0	NA	intron (NM_001308352, intron 2 of 7)	L1_Mus2|LINE|L1	-4559	NM_011146	19016	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	5.944	0.895	0.446	3.088	2.939	1.807	5.144	6.574	4.255	5.079	1.225	1.641	5.953	8.916	5.836	7.876	7.157	5.329	3.060	1.144	0.868	1.436	nan	1.367	3.641
14161	chr8	37248242	37252288	+	0	NA	Intergenic	Intergenic	-226027	NR_126063	414128	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	3.611	2.147	1.035	1.665	2.551	1.575	2.476	4.032	1.850	2.260	5.510	1.456	3.908	4.444	2.579	3.223	2.516	3.289	0.432	0.530	0.454	0.725	0.374	0.194	nan
13733	chr7	132862719	132866671	+	0	NA	intron (NM_198017, intron 1 of 8)	intron (NM_198017, intron 1 of 8)	5470	NM_198017	109359	Mm.274824	NM_198017	ENSMUSG00000030965	Fam175b	AA589499|AI853413|Abro1|C430003P19Rik	family with sequence similarity 175, member B	protein-coding	3.572	0.557	0.619	3.324	3.561	1.891	2.766	2.962	2.880	3.871	1.931	0.670	4.671	7.306	nan	4.557	3.549	4.906	0.435	0.944	0.647	0.681	1.113	0.877	5.593
8973	chr2	165066679	165070714	+	0	NA	intron (NM_170702, intron 6 of 7)	intron (NM_170702, intron 6 of 7)	13060	NM_011611	21939	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	0.481	0.781	0.451	0.366	0.252	0.151	0.328	0.457	0.302	0.334	0.162	0.050	0.162	nan	0.226	0.528	0.601	nan	7.749	4.126	2.812	7.746	7.255	5.819	nan
14804	chr8	129070480	129076699	+	0	NA	intron (NM_001168369, intron 2 of 14)	intron (NM_001168369, intron 2 of 14)	6455	NM_001168369	75453	Mm.286964	NM_029292	ENSMUSG00000056018	Ccdc7b	1700008F21Rik	coiled-coil domain containing 7B	protein-coding	5.059	nan	1.250	3.723	5.110	2.968	nan	6.607	3.732	3.464	3.035	2.641	4.172	6.979	nan	5.553	4.141	nan	nan	1.093	0.769	nan	0.974	nan	nan
7416	chr18	80436039	80438225	+	0	NA	intron (NM_026295, intron 10 of 12)	intron (NM_026295, intron 10 of 12)	32535	NM_026295	67655	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	4.677	nan	0.436	2.013	2.293	1.014	6.248	3.417	2.498	nan	0.898	0.733	4.928	5.187	4.794	4.796	3.846	4.050	1.025	nan	0.442	0.869	1.011	0.692	7.394
7974	chr2	13493716	13497373	+	0	NA	Intergenic	Intergenic	-3668	NM_001081084	65969	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	8.838	12.413	4.013	9.638	2.547	1.457	2.468	2.966	4.391	6.110	3.123	1.234	3.631	5.311	4.598	5.703	3.508	5.672	1.272	1.328	1.477	1.849	0.734	0.502	7.672
3416	chr12	72963772	72975405	+	0	NA	Intergenic	Intergenic	29706	NM_011384	20476	Mm.57138	NM_011384	ENSMUSG00000021099	Six6	Optx2|Six9	sine oculis-related homeobox 6	protein-coding	1.853	9.590	5.292	2.021	1.460	0.656	0.715	0.679	1.815	1.848	1.278	0.897	1.283	1.720	1.232	nan	1.079	1.906	0.904	0.722	0.431	1.239	0.594	0.443	1.844
5254	chr15	62264843	62265997	+	0	NA	Intergenic	Intergenic	-45969	NR_003523	67552	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	1.185	1.300	1.483	1.034	1.469	0.202	nan	3.601	nan	nan	0.074	0.282	1.868	3.863	3.760	2.320	1.114	1.807	0.373	0.228	0.245	0.495	0.322	0.229	0.762
6963	chr17	88995712	89004284	+	0	NA	intron (NM_013523, intron 8 of 9)	intron (NM_013523, intron 8 of 9)	200677	NM_013523	14309	Mm.57155	NM_013523	ENSMUSG00000032937	Fshr	-	follicle stimulating hormone receptor	protein-coding	4.901	2.785	1.604	5.115	1.789	1.031	5.702	6.583	nan	4.160	1.288	1.068	3.801	7.221	5.354	6.866	5.488	5.714	1.128	1.024	1.105	1.274	1.132	1.006	6.507
12929	chr7	16759975	16760994	+	0	NA	Intergenic	Intergenic	-20862	NM_009201	20514	Mm.1056	NM_009201	ENSMUSG00000001918	Slc1a5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC|Slc1a7	solute carrier family 1 (neutral amino acid transporter), member 5	protein-coding	5.452	9.898	5.180	5.445	5.634	2.710	7.248	5.102	3.668	6.542	1.262	1.674	4.746	5.944	5.515	5.146	3.152	5.395	7.007	4.261	5.103	5.267	7.323	7.601	9.219
9635	chr3	104162085	104167018	+	0	NA	intron (NM_001159354, intron 1 of 20)	intron (NM_001159354, intron 1 of 20)	55855	NM_133853	99470	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding	5.849	0.768	0.436	3.293	6.047	4.006	8.057	4.308	4.791	4.893	5.559	2.274	6.741	8.185	nan	6.160	5.013	6.494	1.150	1.249	1.103	1.089	2.151	1.535	5.855
3279	chr12	35893569	35895960	+	0	NA	Intergenic	L1MB5|LINE|L1	-30857	NM_207531	403205	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	2.501	nan	0.657	1.119	2.897	1.751	0.941	1.795	nan	1.820	8.331	2.636	0.789	1.956	0.855	0.872	1.573	1.575	nan	0.849	0.430	0.294	0.492	0.515	1.136
3377	chr12	70471540	70480644	+	0	NA	intron (NR_037248, intron 2 of 4)	MTC|LTR|ERVL-MaLR	22938	NM_028339	72736	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	8.286	9.371	4.226	7.136	4.386	3.176	8.714	5.584	6.917	10.688	4.617	3.955	9.960	9.999	9.048	9.296	9.520	9.612	3.725	2.222	2.197	3.450	2.481	2.493	12.151
1076	chr10	6367398	6373932	+	0	NA	Intergenic	MER34|LTR|ERV1	-387928	NM_001302794	18390	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	6.299	4.515	1.371	3.421	1.358	0.733	4.784	6.854	3.463	3.198	3.827	2.115	3.922	5.173	4.725	6.060	3.793	4.207	3.784	1.717	1.425	4.876	3.300	3.349	4.545
766	chr1	156991883	156994805	+	0	NA	Intergenic	Intergenic	-53718	NM_023884	78255	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	7.998	4.367	2.297	4.646	3.712	2.363	4.886	5.551	nan	4.422	4.712	3.451	5.489	5.258	4.806	8.925	6.677	4.871	nan	2.328	1.594	3.106	nan	2.278	5.248
14350	chr8	77513644	77515796	+	0	NA	intron (NM_030113, intron 1 of 22)	(TTTG)n|Simple_repeat|Simple_repeat	-2336	NR_028125	70345	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	3.063	nan	0.580	2.408	2.840	2.703	nan	3.441	nan	2.177	0.555	0.979	2.390	4.705	3.124	2.998	3.539	2.462	1.979	1.306	1.409	nan	2.421	1.882	2.813
449	chr1	92980144	92983752	+	0	NA	intron (NM_022320, intron 1 of 1)	intron (NM_022320, intron 1 of 1)	3045	NM_022320	64095	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	4.870	4.446	2.438	2.900	2.890	1.352	3.129	2.213	2.153	2.741	2.110	1.075	3.153	4.810	3.476	5.081	2.939	3.743	1.293	1.387	0.780	nan	0.821	0.643	3.739
10178	chr4	63212098	63224491	+	0	NA	intron (NM_025685, intron 1 of 60)	intron (NM_025685, intron 1 of 60)	2882	NM_025685	373864	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	9.068	6.086	2.110	7.058	4.017	2.489	8.024	6.963	6.591	10.258	4.082	1.909	9.006	10.706	8.705	nan	5.344	8.586	2.478	1.228	1.128	nan	nan	2.696	12.716
7524	chr19	7566764	7578136	+	0	NA	intron (NM_139269, intron 2 of 4)	intron (NM_139269, intron 2 of 4)	14991	NM_139269	225845	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	5.313	3.008	1.494	5.281	6.074	5.446	7.480	6.402	nan	5.887	4.170	3.385	4.747	6.093	5.218	nan	7.413	6.357	1.320	1.652	1.829	1.802	2.006	2.360	6.163
1574	chr10	87790450	87820786	+	0	NA	Intergenic	MIRc|SINE|MIR	-52647	NM_001314010	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	11.256	2.347	1.336	6.261	8.091	5.879	11.362	7.308	9.069	12.417	3.942	1.914	11.121	12.515	9.542	10.720	10.522	nan	0.736	1.286	1.197	nan	nan	0.795	11.141
6536	chr17	31962753	31965080	+	0	NA	intron (NM_028902, intron 7 of 7)	L1_Mur2|LINE|L1	70592	NM_028902	74377	Mm.75856	NM_028902	ENSMUSG00000002076	Hsf2bp	4932437G14Rik	heat shock transcription factor 2 binding protein	protein-coding	3.550	4.166	1.683	5.675	4.687	1.962	2.682	2.508	4.008	7.105	9.102	2.237	2.065	5.499	3.888	5.124	2.687	5.648	2.091	1.352	1.209	4.182	1.347	1.149	6.165
1579	chr10	87963698	87967780	+	0	NA	promoter-TSS (NR_000040)	promoter-TSS (NR_000040)	-932	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	7.386	3.478	0.730	7.062	3.117	1.154	3.846	5.618	4.751	7.723	2.124	2.035	5.860	7.280	6.291	8.101	6.479	7.076	1.345	1.222	0.606	nan	nan	0.798	8.595
7438	chr18	83057388	83058885	+	0	NA	Intergenic	Intergenic	-137576	NR_033307	75853	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	nan	0.793	0.553	0.744	0.241	0.084	0.632	0.763	0.574	0.327	0.391	0.660	0.267	0.247	0.466	0.726	0.631	nan	4.800	4.015	2.277	5.897	2.472	2.534	nan
13651	chr7	120733771	120736142	+	0	NA	TTS (NM_001164580)	TTS (NM_001164580)	-4601	NM_177697	233813	Mm.389939	NM_177697	ENSMUSG00000030889	Vwa3a	E030013G06Rik	von Willebrand factor A domain containing 3A	protein-coding	5.068	1.917	0.848	2.356	1.276	0.314	7.052	8.672	3.594	3.245	5.457	3.865	9.831	5.718	9.738	7.783	4.899	5.464	1.040	0.675	0.327	0.948	0.511	0.144	5.842
9795	chr3	127471762	127473518	+	0	NA	intron (NM_001327938, intron 1 of 47)	(CA)n|Simple_repeat|Simple_repeat	26475	NM_001327938	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	2.295	0.725	0.704	1.727	2.095	2.175	1.947	2.352	2.583	2.467	1.009	0.726	3.718	3.886	2.165	nan	2.455	2.135	0.683	0.599	0.268	0.329	0.445	0.219	1.135
14587	chr8	110012646	110023364	+	0	NA	Intergenic	B4A|SINE|B4	21329	NM_011998	26887	Mm.89207	NM_011998	ENSMUSG00000035930	Chst4	GST-3|Gn6st-2|HEC-GlcNAc6ST	carbohydrate (chondroitin 6/keratan) sulfotransferase 4	protein-coding	5.543	2.934	1.982	2.059	4.825	2.753	2.643	6.231	5.902	9.018	1.929	3.369	5.203	6.981	4.651	4.595	4.705	4.325	0.944	1.561	1.046	nan	0.935	0.690	3.627
14338	chr8	74738680	74741005	+	0	NA	Intergenic	L1_Mus3|LINE|L1	-133332	NM_027837	71597	Mm.158735	NM_027837	ENSMUSG00000031621	Isx	9130012O13Rik|Pix-1	intestine specific homeobox	protein-coding	6.038	4.026	2.096	2.979	3.241	1.857	4.698	8.351	nan	3.631	7.603	2.763	5.307	6.722	4.399	6.688	7.595	3.390	1.156	2.772	2.765	nan	1.642	1.113	3.944
11471	chr5	98858421	98861532	+	0	NA	intron (NM_173404, intron 1 of 2)	intron (NM_173404, intron 1 of 2)	5561	NM_001310677	110075	Mm.136461	NM_173404	ENSMUSG00000029335	Bmp3	9530029I04Rik	bone morphogenetic protein 3	protein-coding	3.749	0.441	0.208	1.561	1.411	0.354	2.051	3.375	4.201	4.578	3.554	1.845	3.080	3.978	1.955	2.297	1.672	3.993	0.606	0.358		0.374	0.547	0.308	1.344
6254	chr16	95478173	95490109	+	0	NA	intron (NM_001302152, intron 3 of 10)	intron (NM_001302152, intron 3 of 10)	-24793	NM_001302153	13876	Mm.164531	NM_133659	ENSMUSG00000040732	Erg	D030036I24Rik	avian erythroblastosis virus E-26 (v-ets) oncogene related	protein-coding	8.986	1.008	0.601	5.049	5.540	3.156	3.373	2.856	nan	9.048	5.173	1.158	7.336	8.349	nan	6.125	6.410	nan	nan	1.171	0.831	0.752	0.903	0.743	6.956
4484	chr14	17920532	17923421	+	0	NA	intron (NM_001113417, intron 2 of 9)	B1F|SINE|Alu	-59668	NM_009380	21834	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	1.787	0.575	0.215	1.718	1.259	0.630	2.321	1.428	nan	1.689	0.374	0.452	3.487	4.096	4.480	4.165	1.834	3.360	1.024	0.822	0.331	nan	0.789	0.499	2.529
15137	chr9	59319711	59321014	+	0	NA	Intergenic	URR1A|DNA|hAT-Charlie	28790	NM_028121	72141	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	3.014	1.200	0.695	3.068	1.722	0.731	2.517	3.117	2.902	2.344	1.564	0.681	2.938	3.444	4.732	3.961	2.296	2.829	4.083	2.606	2.448	3.451	3.161	2.037	3.050
11231	chr5	53280650	53282200	+	0	NA	Intergenic	Intergenic	14319	NM_001145433	66278	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	1.877	0.593	0.681	0.868	0.838	0.796	2.159	1.473	1.580	1.631	6.339	1.125	0.737	0.879	1.329	1.506	1.035	1.674	1.088	1.609	2.040	2.924	1.374	1.329	1.740
2989	chr11	115830772	115837071	+	0	NA	intron (NM_145438, intron 1 of 25)	intron (NM_145438, intron 1 of 25)	9863	NM_001252532	217325	Mm.290450	NM_145438	ENSMUSG00000020782	Llgl2	9130006H11Rik|Llglh2	lethal giant larvae homolog 2 (Drosophila)	protein-coding	2.219	nan	0.916	2.306	1.485	1.541	3.313	5.972	3.143	nan	6.703	6.386	3.116	3.658	4.333	3.685	1.520	nan	1.751	nan	1.196	2.042	1.554	1.443	2.353
2833	chr11	102416326	102418099	+	0	NA	Intergenic	MTC|LTR|ERVL-MaLR	-9695	NM_026542	68066	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	9.746	nan	5.077	11.675	6.253	4.399	6.569	7.521	6.216	11.578	8.752	5.834	7.485	10.303	8.489	9.968	7.683	9.873	6.235	nan	2.953	6.135	4.995	5.883	11.221
8356	chr2	72891711	72898103	+	0	NA	Intergenic	MYSERV6-int|LTR|ERVK	-81190	NR_102349	76218	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	6.729	3.371	2.238	3.175	2.801	2.422	6.281	7.827	4.781	4.517	3.713	3.353	7.457	5.892	5.427	6.882	8.683	5.066	1.394	1.466	1.897	0.983	1.043	1.184	5.591
14274	chr8	71229214	71232905	+	0	NA	Intergenic	L1VL2|LINE|L1	-24111	NR_131056	330796	Mm.258257	NR_131056		Gm38415	E230016D10	predicted gene, 38415	ncRNA	0.680	0.564	0.397	0.543	0.285	0.166	0.296	0.539	0.569	0.389	0.407	0.402	0.308	0.210	0.499	0.871	0.563	1.047	2.906	2.598	1.959	6.224	2.601	1.807	nan
14052	chr8	13673409	13678723	+	0	NA	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	1521	NM_009025	19414	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	7.498	16.248	6.213	6.946	2.872	1.548	3.848	5.308	4.119	5.683	4.658	2.058	5.200	6.771	6.272	7.775	4.305	4.949	2.549	2.881	2.815	5.091	1.387	1.312	9.677
3914	chr13	29593893	29597094	+	0	NA	intron (NR_131896, intron 9 of 16)	L1Md_F2|LINE|L1	260180	NR_131896	68916	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding	3.825	1.746	1.002	3.561	2.322	0.660	3.031	4.633	3.045	3.075	4.268	3.621	3.548	4.800	2.872	3.403	2.102	3.751	2.150	1.234	0.767	3.996	1.378	0.788	2.282
7265	chr18	57726676	57729578	+	0	NA	intron (NM_029290, intron 6 of 6)	intron (NM_029290, intron 6 of 6)	-89542	NR_045360	70157	Mm.490532	NR_045360		2210409D07Rik	-	RIKEN cDNA 2210409D07 gene	ncRNA	2.326	nan	0.544	nan	1.175	0.852	4.438	2.465	1.931	2.049	0.549	0.785	3.342	2.699	3.451	4.763	4.183	1.771	nan	0.450	0.380	nan	1.066	0.510	3.096
9456	chr3	88894183	88895322	+	0	NA	intron (NM_001242372, intron 21 of 32)	intron (NM_001242372, intron 21 of 32)	19198	NM_144898	229524	Mm.440405	NM_144898	ENSMUSG00000068922	Msto1	BC008103|mst	misato 1, mitochondrial distribution and morphology regulator	protein-coding	5.923	9.589	3.598	10.130	4.638	4.953	9.370	7.960	4.665	11.501	5.147	2.927	8.834	9.557	10.144	11.276	6.329	7.452	5.296	2.905	5.149	7.247	3.287	6.967	17.059
3692	chr12	106239846	106244636	+	0	NA	Intergenic	Intergenic	205425	NR_036593	76639	Mm.375609	NR_036593	ENSMUSG00000092066	1700121N20Rik	-	RIKEN cDNA 1700121N20 gene	ncRNA	2.089	2.155	1.019	nan	1.128	0.542	0.656	nan	nan	nan	1.410	1.269	0.748	nan	1.392	1.449	0.728	1.361	5.416	2.834	1.473	5.680	3.953	2.376	1.777
8065	chr2	29017459	29020195	+	0	NA	intron (NM_001166705, intron 1 of 5)	intron (NM_001166705, intron 1 of 5)	36239	NM_001166705	329375	Mm.425079	NM_001085514	ENSMUSG00000079502	Cfap77	1700101E01Rik|Gm823	cilia and flagella associated protein 77	protein-coding	3.734	0.610	0.528	1.225	1.524	0.338	3.518	1.979	nan	2.297	0.330	0.358	5.284	5.499	3.293	5.632	5.094	3.228	0.739	0.672	0.381	1.016	0.618	0.422	3.972
5770	chr16	8828785	8838755	+	0	NA	intron (NM_001081400, intron 2 of 3)	B1_Mus2|SINE|Alu	3670	NM_001081400	69053	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	nan	6.100	2.835	6.534	6.916	6.337	5.058	7.040	4.201	6.645	3.681	2.591	5.034	5.941	4.964	6.652	4.234	5.786	2.950	1.976	2.735	2.726	2.426	3.308	7.014
15427	chr9	100934125	100936244	+	0	NA	intron (NM_009282, intron 25 of 33)	Lx5|LINE|L1	99700	NM_001311149	66904	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	9.573	8.209	3.075	7.268	3.235	1.369	7.043	9.341	7.075	9.258	5.916	4.440	7.380	9.138	9.223	11.269	5.959	8.819	6.347	4.033	2.319	6.629	4.804	2.713	12.959
12612	chr6	114879628	114885052	+	0	NA	intron (NM_177683, intron 2 of 4)	PB1D10|SINE|Alu	39412	NM_177683	232334	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	2.554	9.594	4.616	2.360	1.556	1.123	4.040	6.523	2.064	2.118	4.941	2.367	3.514	4.460	4.500	4.738	3.611	3.326	3.712	2.801	1.453	6.202	nan	1.625	3.897
5406	chr15	78600266	78604532	+	0	NA	intron (NM_028195, intron 1 of 12)	MLT1J|LTR|ERVL-MaLR	5352	NM_028195	72318	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	nan	10.363	3.573	6.147	2.217	0.929	nan	1.519	1.965	nan	nan	0.675	1.410	nan	2.004	2.968	nan	3.279	5.924	4.220	2.734	nan	5.291	4.533	3.886
3726	chr12	111721830	111726412	+	0	NA	intron (NM_001163388, intron 2 of 5)	B2_Mm1t|SINE|B2	10852	NM_026511	68020	Mm.425762	NM_026511	ENSMUSG00000037787	Apopt1	1700081D05Rik|2810002N01Rik|Apop-1|Apop1	apoptogenic, mitochondrial 1	protein-coding	9.782	10.308	4.441	8.905	3.280	1.667	6.598	6.125	6.583	6.668	4.928	4.332	7.821	9.075	9.728	11.306	7.693	8.679	5.239	1.915	1.845	5.657	2.875	1.594	14.636
10710	chr4	135474333	135478149	+	0	NA	intron (NM_001347220, intron 5 of 11)	URR1A|DNA|hAT-Charlie	18263	NM_028995	74552	Mm.26548	NM_028995	ENSMUSG00000028803	Nipal3	9130020G22Rik|AI480660|Npal3	NIPA-like domain containing 3	protein-coding	8.367	9.124	3.261	6.278	2.861	1.599	6.337	7.337	4.856	6.097	4.833	2.807	7.539	8.456	7.960	9.590	5.626	6.742	3.589	1.625	1.272	4.581	nan	2.286	10.145
10698	chr4	134890669	134895560	+	0	NA	intron (NM_011270, intron 8 of 9)	intron (NM_011270, intron 8 of 9)	21802	NM_027935	71817	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	4.221	0.514	0.691	3.043	3.923	2.636	5.843	7.206	5.350	5.600	4.831	1.848	5.334	7.555	4.205	4.788	3.632	4.199	1.078	0.884	0.558	1.086	nan	0.884	2.833
10815	chr4	140856266	140871866	+	0	NA	Intergenic	MER63A|DNA|hAT-Blackjack	-8627	NR_040654	75128	Mm.67085	NR_040654	ENSMUSG00000087045	4930515B02Rik	-	RIKEN cDNA 4930515B02 gene	ncRNA	nan	1.144	0.401	5.954	4.707	2.795	7.388	6.509	nan	5.537	4.893	2.969	5.063	8.274	6.810	7.428	3.296	7.105	1.909	1.216	1.237	2.723	nan	1.135	10.634
7906	chr19	58013102	58014681	+	0	NA	intron (NM_181415, intron 27 of 28)	MTA_Mm-int|LTR|ERVL-MaLR	-37276	NR_049196	100885835		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	3.473	nan	0.316	2.846	1.092	0.504	3.073	1.405	3.499	3.341	0.379	0.847	6.008	4.966	4.736	6.161	7.033	4.951	0.767	0.727	0.388	0.858	0.392	0.284	nan
12593	chr6	113578511	113582107	+	0	NA	intron (NM_001347350, intron 34 of 42)	intron (NM_001347350, intron 34 of 42)	20406	NM_027633	70979	Mm.72959	NM_027633	ENSMUSG00000033963	Fancd2os	4931417G12Rik	Fancd2 opposite strand	protein-coding	7.419	5.823	2.487	5.125	4.748	2.570	2.821	6.364	4.466	5.849	1.141	0.938	6.089	9.592	4.824	6.155	5.236	5.752	1.020	1.187	1.067	1.056	nan	0.704	7.572
2944	chr11	109443974	109449943	+	0	NA	intron (NR_040680, intron 1 of 1)	B3|SINE|B2	6880	NR_040680	100503496	Mm.265874	NR_040680		LOC100503496	-	uncharacterized LOC100503496	ncRNA	1.779	1.687	0.914	nan	0.872	0.669	2.277	1.816	nan	nan	0.703	0.789	1.288	nan	1.686	2.442	1.968	nan	3.611	4.694	4.214	nan	3.624	2.433	2.103
3144	chr11	121601737	121605259	+	0	NA	intron (NM_029878, intron 32 of 38)	intron (NM_029878, intron 32 of 38)	69653	NM_178664	210004	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	5.798	nan	0.414	4.029	3.848	1.761	nan	4.329	4.842	4.727	3.673	1.760	3.560	6.105	4.335	5.864	2.890	4.687	0.911	nan	0.618	0.653	0.527	0.363	4.175
5059	chr15	12186790	12188546	+	0	NA	Intergenic	Intergenic	16176	NR_035443	100316684		NR_035443	ENSMUSG00000084592	Mir1898	Mirn1898|mmu-mir-1898	microRNA 1898	ncRNA	2.924	1.254	0.485	5.067	1.790	0.642	3.471	7.702	4.197	4.741	1.438	2.011	6.488	5.873	3.883	4.896	3.593	5.054	3.021	2.060	1.153	5.282	3.773	2.357	2.916
9603	chr3	101208366	101215937	+	0	NA	Intergenic	Intergenic	75788	NM_013486	12481	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	4.424	0.720	0.643	2.259	2.387	1.505	4.002	1.298	2.879	2.936	nan	1.121	3.099	3.448	2.540	nan	3.433	3.329	0.878	0.886	0.979	1.012	0.939	0.856	6.806
387	chr1	88189084	88190356	+	0	NA	intron (NM_201643, intron 1 of 4)	RLTR13D6|LTR|ERVK	-10891	NM_013701	22236	Mm.300095	NM_013701	ENSMUSG00000090171	Ugt1a2	UDPGT 1-2|Ugt1	UDP glucuronosyltransferase 1 family, polypeptide A2	protein-coding	4.633	0.643	0.708	1.960	6.116	5.777	5.026	4.944	3.922	3.875	1.716	1.349	4.815	4.041	3.524	6.795	7.504	4.254	0.524	0.671	1.340	nan	0.473	0.783	2.751
12671	chr6	120827775	120829315	+	0	NA	Intergenic	ID_B1|SINE|B4	-5860	NM_007510	11973	Mm.29045	NM_007510	ENSMUSG00000019210	Atp6v1e1	2410029D23Rik|Atp6e|Atp6e2|Atp6v1e|D6Ertd385e|E2|P31|Vma4	ATPase, H+ transporting, lysosomal V1 subunit E1	protein-coding	4.999	0.754	0.565	1.504	2.406	0.398	3.319	2.585	2.192	2.902	0.974	1.177	2.970	5.067	2.693	4.603	5.166	4.304	0.886	0.669	0.239	0.395	nan	0.577	3.155
1913	chr11	4207839	4209474	+	0	NA	intron (NM_134023, intron 2 of 8)	intron (NM_134023, intron 2 of 8)	-9595	NM_028022	71962	Mm.7852	NM_028022	ENSMUSG00000020424	Gatsl3	2410008K03Rik	GATS protein-like 3	protein-coding	6.760	5.208	2.217	5.355	3.336	1.078	6.881	6.767	4.544	6.834	7.652	4.757	6.726	8.362	6.476	7.180	4.079	6.049	3.107	nan	0.622	2.883	1.465	0.923	5.638
11050	chr5	20803458	20806266	+	0	NA	intron (NM_172992, intron 5 of 17)	intron (NM_172992, intron 5 of 17)	77262	NM_172992	68770	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0.626	0.818	0.630	0.663	0.564	0.359	0.741	0.516	0.815	0.673	0.459	0.465	0.335	0.627	0.578	0.719	1.008	0.732	1.944	1.403	0.879	4.232	1.108	0.994	0.664
4944	chr14	106221631	106222921	+	0	NA	Intergenic	Intergenic	116078	NR_073203	212085	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding	2.843	0.315	0.089	2.122	1.615	0.535	2.963	2.868	3.459	3.329	0.579	0.474	3.318	4.227	5.946	5.614	1.516	4.736	0.293	0.548	0.247	0.933	0.411	0.265	4.833
15063	chr9	50277644	50281432	+	0	NA	Intergenic	L1_Mus1|LINE|L1	-46356	NR_131161	71873		NR_131161	ENSMUSG00000110916	2310003N18Rik	-	RIKEN cDNA 2310003N18 gene	ncRNA	5.085	0.778	0.427	3.416	1.964	1.074	3.419	5.615	3.950	3.963	7.850	3.370	2.418	3.186	4.795	4.942	2.407	4.853	1.470	0.742	0.507	nan	1.581	1.008	nan
7156	chr18	36550346	36553050	+	0	NA	intron (NM_001271547, intron 19 of 19)	intron (NM_001271547, intron 19 of 19)	-8905	NM_175375	108857	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	3.516	0.565	0.191	2.637	2.565	1.157	5.414	6.745	2.689	2.489	2.197	3.103	3.591	4.967	4.016	3.930	3.339	4.321	1.855	1.202	0.756	2.431	0.421	0.528	4.581
8836	chr2	153474885	153476000	+	0	NA	intron (NM_001134300, intron 3 of 10)	intron (NM_001134300, intron 3 of 10)	-30963	NM_001001986	329540	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	4.218	8.720	1.998	6.388	1.855	1.253	4.309	4.678	2.470	7.870	2.814	1.983	3.403	3.429	5.937	7.251	3.525	4.644	3.165	1.689	2.480	3.877	2.547	4.033	14.391
6663	chr17	46020212	46024696	+	0	NA	intron (NM_001110266, intron 2 of 4)	intron (NM_001110266, intron 2 of 4)	2709	NM_001110267	22339	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	7.312	0.945	0.393	3.221	2.384	1.512	13.074	8.786	4.181	6.795	1.084	0.840	8.275	10.478	9.132	9.026	7.497	6.253	2.047	2.041	1.695	4.339	4.976	4.030	13.921
257	chr1	64881456	64883861	+	0	NA	intron (NM_001039493, intron 5 of 7)	intron (NM_001039493, intron 5 of 7)	74166	NM_001039493	241075	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	2.995	1.459	0.831	3.175	2.387	1.172	2.024	1.677	2.556	2.541	1.620	0.595	4.023	4.169	2.313	4.383	2.250	3.273	0.579	0.325	0.315	0.751	0.668	0.227	1.800
10118	chr4	57318817	57322454	+	0	NA	Intergenic	Intergenic	-18798	NM_011207	545622	Mm.246552	NM_011207	ENSMUSG00000038764	Ptpn3	9530011I20Rik|PTP-H1|PTPCL	protein tyrosine phosphatase, non-receptor type 3	protein-coding	5.960	nan	0.667	4.249	5.056	2.801	6.752	5.803	4.316	5.158	2.453	2.565	5.653	7.975	6.485	7.393	3.863	6.839	nan	1.837	0.927	3.730	2.094	1.775	7.595
9416	chr3	85794923	85799564	+	0	NA	Intergenic	L1MB7|LINE|L1	-51034	NM_172682	229488	Mm.119926	NM_172682	ENSMUSG00000051000	Fam160a1	9930021J17Rik	family with sequence similarity 160, member A1	protein-coding	4.748	0.526	0.457	2.810	4.361	1.635	5.211	6.848	2.646	2.526	2.984	1.961	4.554	7.520	4.658	4.159	2.597	5.205	nan	1.169	0.650	1.428	1.878	1.095	3.492
951	chr1	182741255	182745386	+	0	NA	Intergenic	L1M2|LINE|L1	5860	NM_001033547	433386	Mm.338103	NM_001033547	ENSMUSG00000043429	Ccdc185	4922505E12Rik	coiled-coil domain containing 185	protein-coding	12.426	15.887	6.560	12.725	6.219	4.167	9.285	8.630	6.116	14.354	7.556	5.317	9.525	11.452	9.808	14.347	9.693	11.197	8.824	4.877	5.123	9.806	6.434	7.023	14.655
14731	chr8	125089868	125092900	+	0	NA	intron (NM_174853, intron 3 of 11)	intron (NM_174853, intron 3 of 11)	37189	NM_174854	244667	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	9.234	11.487	3.530	8.303	6.786	6.529	6.949	9.566	4.902	6.777	6.472	4.845	8.987	8.918	9.391	11.793	6.754	8.163	nan	3.642	6.184	9.584	4.979	nan	14.073
4750	chr14	63778307	63779630	+	0	NA	intron (NM_173393, intron 1 of 2)	intron (NM_173393, intron 1 of 2)	51779	NR_030611	100124452		NR_030611	ENSMUSG00000076049	Mir598	Mirn598|mir-598|mmu-mir-598	microRNA 598	ncRNA	2.981	0.758	0.494	2.213	1.295	0.552	1.971	4.330	2.383	2.525	1.192	1.353	2.015	3.636	2.356	2.156	1.085	2.489	3.396	1.706	0.869	3.988	2.073	1.153	2.753
85	chr1	34776612	34780734	+	0	NA	Intergenic	MTE2a|LTR|ERVL-MaLR	-23049	NM_183019	226970	Mm.41604	NM_183019	ENSMUSG00000037509	Arhgef4	9330140K16Rik|Asef|ENSMUSG00000070955	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding	0.584	0.574	0.503	0.408	0.254	0.088	0.392	0.600	0.236	0.458	7.874	1.139	0.189	0.359	0.429	nan	0.226	0.483	0.609	0.335	0.651	0.592	0.492	0.290	0.771
809	chr1	163965882	163969282	+	0	NA	intron (NM_201364, intron 13 of 23)	intron (NM_201364, intron 13 of 23)	27199	NM_201364	381306	Mm.28152	NM_201364	ENSMUSG00000041406	BC055324	-	cDNA sequence BC055324	protein-coding	5.289	1.140	0.419	nan	2.444	1.095	2.664	2.370	2.585	2.694	2.426	0.996	3.624	4.934	3.263	4.768	4.125	3.253	1.198	0.979	0.469	nan	nan	0.533	4.207
7857	chr19	47943242	47944503	+	0	NA	intron (NM_001163267, intron 2 of 17)	intron (NM_001163267, intron 2 of 17)	6160	NM_001163267	381229	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	1.577	0.581	0.493	nan	0.863	0.231	1.996	4.525	1.667	1.744	3.690	3.331	1.622	3.688	3.080	2.490	2.012	3.507	0.464	0.658	0.230	0.320	1.883	0.826	1.308
2200	chr11	53670422	53673591	+	0	NA	intron (NM_009012, intron 19 of 24)	intron (NM_009012, intron 19 of 24)	35313	NM_009012	19360	Mm.4888	NM_009012	ENSMUSG00000020380	Rad50	Mrell|Rad50l	RAD50 double strand break repair protein	protein-coding	3.634	6.665	1.533	7.606	3.739	3.004	2.747	2.529	3.413	5.168	2.216	1.713	3.272	3.355	3.735	4.911	3.206	5.207	3.614	3.048	3.640	3.565	3.083	3.493	5.198
14823	chr8	129405286	129411373	+	0	NA	Intergenic	Intergenic	144699	NR_144501	102635552		NM_001346808		Gm32856	-	predicted gene, 32856	protein-coding	4.291	7.716	4.178	nan	4.873	2.984	nan	3.050	3.910	4.129	3.246	2.381	1.866	4.615	nan	3.298	1.882	nan	nan	1.538	1.588	nan	1.309	nan	nan
6926	chr17	84935678	84937491	+	0	NA	intron (NR_027929, intron 2 of 3)	intron (NR_027929, intron 2 of 3)	-20157	NM_001159497	19043	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	3.264	0.736	0.503	3.401	4.684	3.772	9.887	2.032	5.855	5.719	0.244	0.832	7.252	6.328	6.958	8.661	6.994	6.807	1.085	1.447	2.514	1.607	1.277	1.543	6.509
9469	chr3	89221249	89229387	+	0	NA	exon (NM_013691, exon 21 of 23)	exon (NM_013691, exon 21 of 23)	1880	NR_030579	100124470		NR_030579	ENSMUSG00000076255	Mir92b	Mirn92b|mir-92b|mmu-mir-92b	microRNA 92b	ncRNA	9.201	4.589	1.801	7.172	6.239	3.776	12.482	9.785	6.183	8.405	6.130	2.772	9.816	14.226	9.011	9.659	8.174	9.045	nan	2.894	1.962	3.426	3.010	2.302	11.843
7580	chr19	11021039	11024516	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-4814	NM_001251849	76002	Mm.139320	NM_001251849	ENSMUSG00000094584	Ms4a18	5033428B15Rik	membrane-spanning 4-domains, subfamily A, member 18	protein-coding	5.955	3.649	2.011	3.949	1.938	1.244	3.582	4.289	nan	3.346	2.633	1.364	2.205	3.564	3.589	4.909	3.720	4.483	1.015	0.769	0.599	1.490	1.130	0.630	7.523
736	chr1	153342819	153344204	+	0	NA	Intergenic	L1VL4|LINE|L1	-10725	NM_010683	226519	Mm.1249	NM_010683	ENSMUSG00000026478	Lamc1	Lamb2	laminin, gamma 1	protein-coding	1.868	1.399	1.057	1.685	2.688	0.993	2.143	2.058	nan	1.764	0.950	0.908	1.783	3.460	1.659	2.901	2.501	1.591	nan	1.190	0.445	0.556	nan	0.571	0.881
13062	chr7	29379966	29383143	+	0	NA	intron (NM_001081028, intron 9 of 22)	intron (NM_001081028, intron 9 of 22)	77549	NM_013874	29861	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	8.569	2.991	2.088	7.420	5.383	2.900	8.516	12.123	4.574	7.040	5.750	2.451	7.266	11.238	6.683	7.430	6.532	8.250	3.232	2.860	1.617	3.912	4.822	3.549	10.709
8310	chr2	68214210	68215191	+	0	NA	intron (NM_016866, intron 17 of 17)	intron (NM_016866, intron 17 of 17)	110028	NM_020283	26877	Mm.226435	NM_020283	ENSMUSG00000034780	B3galt1	beta3Gal-T1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	protein-coding	1.800	1.829	0.403	1.088	0.589	0.084	3.899	7.051	1.176	1.103	1.757	0.195	3.160	3.111	3.985	5.433	2.385	2.793	0.694	0.089	0.095	1.051	0.469		5.522
539	chr1	127376412	127380615	+	0	NA	intron (NM_145128, intron 6 of 17)	intron (NM_145128, intron 6 of 17)	173527	NM_145128	107895	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	4.362	nan	0.684	0.800	0.451	0.179	5.448	5.010	1.519	1.030	2.465	1.227	3.770	2.004	5.276	9.781	4.418	nan	nan	0.771	0.803	1.298	2.104	1.250	2.426
5569	chr15	91500804	91511792	+	0	NA	intron (NM_001033633, intron 2 of 9)	MTB|LTR|ERVL-MaLR	66963	NM_001033633	239606	Mm.360596	NM_001033633	ENSMUSG00000036298	Slc2a13	6530403A04|A630029G22Rik|AI505012|Gm308	solute carrier family 2 (facilitated glucose transporter), member 13	protein-coding	8.747	3.166	2.217	5.632	5.184	2.938	nan	7.649	8.537	11.342	2.825	1.525	8.020	6.589	nan	6.526	8.456	nan	nan	2.330	1.477	nan	1.755	1.569	nan
2847	chr11	103031863	103034252	+	0	NA	intron (NM_008707, intron 1 of 11)	intron (NM_008707, intron 1 of 11)	4495	NM_008707	18107	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	4.787	15.489	3.575	6.030	1.106	1.051	1.106	1.629	nan	6.511	2.415	1.851	1.445	2.090	2.975	3.600	1.421	3.073	4.151	1.296	2.257	nan	1.335	3.038	6.075
8300	chr2	64858716	64863262	+	0	NA	Intergenic	Intergenic	161777	NM_016719	50915	Mm.214554	NM_016719	ENSMUSG00000026888	Grb14	AI505286	growth factor receptor bound protein 14	protein-coding	3.814	0.585	0.299	4.739	2.368	1.656	4.891	3.946	4.966	7.563	0.632	1.059	6.214	5.605	7.342	8.812	6.121	7.484	2.080	0.907	1.390	1.869	1.830	2.225	9.729
3339	chr12	56543158	56546681	+	0	NA	Intergenic	Intergenic	-8011	NM_009385	21869	Mm.89972	NM_009385	ENSMUSG00000001496	Nkx2-1	AV026640|Nkx2.1|T/EBP|Titf1|Ttf-1	NK2 homeobox 1	protein-coding	6.809	4.582	2.438	6.734	4.359	3.097	3.253	5.919	3.295	3.435	2.851	1.953	3.087	5.558	3.739	4.170	3.395	4.535	4.307	3.068	2.507	2.812	5.199	3.884	5.005
11911	chr5	143020018	143023472	+	0	NA	intron (NM_080561, intron 14 of 16)	B1_Mur3|SINE|Alu	61390	NM_007984	14086	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	4.327	0.779	0.671	3.184	4.870	2.235	1.387	0.967	nan	4.456	0.763	0.555	2.133	4.445	3.691	4.026	2.352	5.314	0.468	0.646	0.426	0.450	0.368	0.364	nan
6347	chr17	13896987	13898658	+	0	NA	intron (NM_010806, intron 30 of 32)	intron (NM_010806, intron 30 of 32)	-50551	NM_001122977	635895	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	7.254	6.580	1.828	13.989	3.278	3.635	10.990	7.584	4.141	21.915	6.991	4.177	6.999	9.562	10.449	12.714	6.651	11.044	6.444	1.174	4.690	9.126	2.682	8.061	22.973
4369	chr13	105075274	105079559	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-4706	NM_025751	66763	Mm.109093	NM_025751	ENSMUSG00000021718	4933425L06Rik	-	RIKEN cDNA 4933425L06 gene	protein-coding	9.936	4.586	3.075	5.282	6.340	3.568	6.692	4.768	nan	6.772	3.289	1.404	5.567	10.021	5.959	6.966	8.432	4.226	2.113	4.913	2.278	nan	1.726	0.955	6.628
520	chr1	121314768	121319693	+	0	NA	intron (NM_001271532, intron 1 of 4)	Lx8|LINE|L1	10448	NM_001271531	72999	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	4.955	1.318	0.371	7.208	3.075	2.527	8.614	8.374	3.168	13.521	5.569	2.504	8.340	6.967	7.043	8.591	7.310	4.946	3.067	1.305	2.194	2.972	3.008	4.131	13.849
2865	chr11	104501981	104509375	+	0	NA	exon (NM_145436, exon 19 of 19)	exon (NM_145436, exon 19 of 19)	44942	NM_001285990	217232	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	1.091	10.423	5.960	nan	0.878	0.395	0.534	0.449	nan	nan	1.301	0.610	0.402	nan	0.498	0.872	0.693	nan	0.708	0.679	0.482	nan	0.497	0.290	0.808
11055	chr5	22913461	22926705	+	0	NA	intron (NM_001081231, intron 1 of 3)	intron (NM_001081231, intron 1 of 3)	-173199	NR_027362	330052	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	6.529	5.937	2.933	5.488	4.023	2.116	4.543	4.981	4.459	5.322	3.014	2.096	4.941	7.483	5.986	6.104	3.939	4.982	2.178	1.773	1.123	2.370	1.415	0.912	4.916
12501	chr6	94630283	94632996	+	0	NA	intron (NM_008377, intron 3 of 18)	intron (NM_008377, intron 3 of 18)	-25224	NR_106008	102466992		NR_106008	ENSMUSG00000098531	Mir7041	Gm27872|mmu-mir-7041	microRNA 7041	ncRNA	1.717	3.767	0.937	2.243	0.731	0.364	1.067	2.656	1.999	1.145	2.781	5.219	1.441	1.514	nan	nan	1.844	1.397	3.346	nan	1.105	4.016	2.750	2.357	0.940
11875	chr5	139761010	139763156	+	0	NA	exon (NM_026748, exon 25 of 47)	exon (NM_026748, exon 25 of 47)	5860	NR_106004	102465628		NR_106004	ENSMUSG00000098574	Mir7037	Gm27447|mmu-mir-7037	microRNA 7037	ncRNA	3.378	6.524	1.685	4.232	0.756	0.275	2.154	4.167	2.170	2.897	2.365	1.841	2.555	3.235	4.594	3.909	1.378	3.546	0.876	0.630	0.685	0.992	nan	0.262	3.370
13531	chr7	109044325	109046171	+	0	NA	intron (NM_001311161, intron 5 of 5)	Lx6|LINE|L1	34368	NM_021885	22141	Mm.439722	NM_021885	ENSMUSG00000031028	Tub	rd5|tub	tubby candidate gene	protein-coding	7.988	9.203	5.921	6.514	6.053	3.409	5.101	7.695	3.973	4.126	5.995	2.529	4.840	8.141	6.064	6.937	7.253	4.891	5.611	6.809	4.647	5.045	7.524	5.419	8.133
9157	chr3	19347093	19352043	+	0	NA	Intergenic	Intergenic	-38246	NM_001122759	18583	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	3.374	nan	0.915	2.575	3.209	1.957	4.083	3.221	4.485	4.699	2.517	1.602	4.824	4.635	2.877	3.540	3.705	5.085	0.901	0.937	0.421	0.599	0.839	0.466	1.915
4617	chr14	41969909	42000697	+	0	NA	Intergenic	Intergenic	109974	NR_073362	73553	Mm.243777	NM_028570	ENSMUSG00000090462	1700091H14Rik	100041930|Gm3578	RIKEN cDNA 1700091H14 gene	ncRNA	4.603	0.650	0.455	4.042	4.148	1.976	5.696	6.557	5.435	6.270	1.635	0.877	6.251	7.371	6.689	7.481	4.037	7.663	0.688	0.616	0.475	0.759	0.612	0.429	5.642
14323	chr8	73904006	73907911	+	0	NA	Intergenic	Intergenic	-552418	NM_010687	16795	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	8.444	6.633	1.129	10.223	4.200	2.529	8.189	11.103	nan	13.211	5.502	4.675	10.482	9.875	11.011	11.879	5.915	10.088	2.646	1.114	2.491	nan	1.875	3.000	17.855
11783	chr5	135407698	135408903	+	0	NA	3' UTR (NM_146001, exon 31 of 31)	3' UTR (NM_146001, exon 31 of 31)	-13754	NM_148932	107939	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	6.107	4.687	1.776	5.243	3.710	2.229	5.375	5.575	2.589	4.465	3.170	3.347	3.587	6.021	6.977	6.075	4.169	4.528	3.185	2.421	2.998	3.338	2.028	2.372	6.839
2642	chr11	93994479	93997112	+	0	NA	promoter-TSS (NM_001199204)	promoter-TSS (NM_001199204)	-296	NM_001199203	70834	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	6.885	nan	0.380	5.073	1.721	0.868	3.622	6.342	3.559	5.011	4.128	2.440	4.516	6.429	5.815	8.710	4.319	5.563	6.539	4.045	2.954	9.465	nan	nan	10.046
5867	chr16	19992935	19997841	+	0	NA	Intergenic	Intergenic	-12339	NM_183390	239743	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	0.766	6.835	6.020	0.518	0.541	0.628	0.902	0.623	0.894	nan	1.244	0.824	0.484	0.567	0.669	nan	0.940	1.204	0.626	0.620	0.326	0.239	0.486	0.346	0.707
2354	chr11	68766536	68777018	+	0	NA	intron (NM_175260, intron 14 of 40)	intron (NM_175260, intron 14 of 40)	79862	NM_175260	77579	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	1.962	0.793	0.523	2.293	1.636	1.030	1.268	0.883	1.246	1.468	0.935	0.677	0.651	nan	0.932	1.388	1.105	1.629	4.456	4.801	4.465	4.528	nan	5.800	nan
4714	chr14	57975894	57977434	+	0	NA	intron (NM_028643, intron 1 of 11)	intron (NM_028643, intron 1 of 11)	22598	NM_028643	68514	Mm.26834	NM_028643	ENSMUSG00000021973	Micu2	1110008L20Rik|4833427E09Rik|AU041871|Efha1|Smhs2	mitochondrial calcium uptake 2	protein-coding	3.059	nan	1.146	1.382	1.239	0.721	1.751	1.557	2.018	2.214	0.419	0.168	2.879	3.811	3.154	3.920	2.792	2.617	0.670	0.403	0.616	0.407	0.305	0.253	4.567
3479	chr12	80201661	80206374	+	0	NA	intron (NM_001346669, intron 3 of 20)	intron (NM_001346669, intron 3 of 20)	56354	NM_134156	109711	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	5.269	0.547	0.445	2.266	1.686	1.274	3.235	6.373	2.307	2.729	2.299	1.568	5.400	4.551	2.668	nan	5.303	3.688	0.948	1.130	0.763	1.042	1.010	0.825	4.830
7698	chr19	32246266	32257978	+	0	NA	intron (NM_144792, intron 3 of 9)	intron (NM_144792, intron 3 of 9)	-41109	NM_001168526	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	6.387	3.586	1.880	7.231	6.290	4.234	4.871	8.925	6.165	6.355	nan	2.777	5.313	7.255	6.056	7.188	7.176	7.138	nan	1.525	0.950	1.315	nan	0.626	6.087
5494	chr15	82987477	82989460	+	0	NA	Intergenic	Intergenic	-29172	NR_037241	100526477		NR_037241	ENSMUSG00000092751	Mir3080	mmu-mir-3080	microRNA 3080	ncRNA	3.504	1.932	0.293	4.276	2.490	0.750	3.421	3.611	3.189	3.707	nan	0.995	3.854	4.711	4.352	4.335	nan	4.484	0.940	0.733	0.934	nan	0.613	0.386	5.005
12696	chr6	124989039	124991816	+	0	NA	Intergenic	Intergenic	-6293	NM_175696	319352	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	7.645	nan	2.482	3.944	6.551	5.739	9.858	10.549	3.855	3.538	3.563	2.778	5.278	5.712	6.821	8.889	7.597	4.866	3.047	3.100	2.663	2.905	3.974	3.340	4.719
13980	chr8	9236798	9242123	+	0	NA	intron (NM_001347127, intron 1 of 3)	intron (NM_001347127, intron 1 of 3)	94791	NR_073360	74688	Mm.159298	NR_073360	ENSMUSG00000109215	4930453L07Rik	-	RIKEN cDNA 4930453L07 gene	ncRNA	2.714	0.507	0.391	0.465	0.249	0.168	0.488	2.340	0.763	0.612	0.188	0.170	0.958	0.990	1.503	2.200	2.164	1.002	3.798	4.040	2.270	7.455	2.560	1.511	1.684
6871	chr17	79697959	79701819	+	0	NA	Intergenic	Intergenic	15152	NM_009994	13078	Mm.214016	NM_009994	ENSMUSG00000024087	Cyp1b1	CP1B|P4501b1	cytochrome P450, family 1, subfamily b, polypeptide 1	protein-coding	2.741	1.132	0.774	3.903	7.445	4.472	8.711	nan	nan	3.060	2.592	0.771	4.343	5.170	6.055	5.579	3.894	4.567	0.517	0.469	0.374	0.372	0.486	0.466	7.757
175	chr1	52855427	52858175	+	0	NA	intron (NM_146108, intron 2 of 13)	intron (NM_146108, intron 2 of 13)	11763	NM_146108	227095	Mm.222063	NM_146108	ENSMUSG00000041426	Hibch	2610509I15Rik|HIBYL-COA-H	3-hydroxyisobutyryl-Coenzyme A hydrolase	protein-coding	5.732	13.132	7.225	5.370	3.994	2.415	3.819	4.271	3.995	3.393	3.140	2.548	5.030	4.106	5.416	8.213	4.966	4.552	5.618	2.103	1.918	1.883	4.021	4.429	5.116
584	chr1	132382171	132385026	+	0	NA	intron (NM_178874, intron 1 of 4)	intron (NM_178874, intron 1 of 4)	6720	NM_001311107	68875	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	3.246	nan	0.185	0.957	1.272	0.611	1.985	3.904	2.372	1.513	5.413	2.901	1.736	2.227	2.179	3.068	2.332	2.929	nan	0.988	0.086	0.459	0.783	0.231	1.340
14124	chr8	34841033	34843918	+	0	NA	intron (NM_175091, intron 21 of 26)	intron (NM_175091, intron 21 of 26)	34865	NM_176933	319520	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	5.748	6.052	2.325	5.020	2.941	2.535	4.436	7.530	3.532	5.863	6.444	3.201	4.504	6.025	5.192	6.546	5.528	4.787	2.562	2.347	1.705	4.705	1.904	1.650	7.111
12029	chr6	5123872	5125234	+	0	NA	intron (NM_181595, intron 11 of 15)	Lx3B|LINE|L1	69393	NM_011134	18979	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	2.228	0.631	0.102	1.952	1.107	0.414	2.232	3.348	1.996	2.485	0.668	0.204	3.439	4.261	3.408	5.489	3.343	3.413	0.759	0.631	0.038	0.622	0.397	0.489	2.032
8933	chr2	162920101	162922166	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	-10375	NM_026499	67996	Mm.24042	NM_026499	ENSMUSG00000016921	Srsf6	1210001E11Rik|AI314910|AW146126|Sfrs6	serine/arginine-rich splicing factor 6	protein-coding	3.388	0.652	0.853	1.949	1.592	1.271	5.041	4.406	nan	3.960	0.567	1.175	7.091	3.580	2.977	4.709	3.379	nan	nan	0.975	1.580	0.735	1.170	1.226	5.831
8114	chr2	31814006	31821705	+	0	NA	intron (NM_178887, intron 5 of 6)	intron (NM_178887, intron 5 of 6)	-7275	NM_183424	227717	Mm.185027	NM_183424	ENSMUSG00000043102	Qrfp	P518	pyroglutamylated RFamide peptide	protein-coding	5.221	0.841	0.541	1.507	1.198	0.513	7.405	7.557	nan	4.956	0.520	0.379	6.568	6.413	5.455	7.983	5.842	3.787	2.200	1.090	0.925	1.686	1.626	1.279	8.770
14883	chr9	20800801	20802753	+	0	NA	exon (NM_001317388, exon 13 of 67)	exon (NM_001317388, exon 13 of 67)	13290	NM_001317388	53867	Mm.334994	NM_016919	ENSMUSG00000004098	Col5a3	-	collagen, type V, alpha 3	protein-coding	2.312	7.359	6.471	1.483	2.235	1.560	1.406	2.205	2.978	2.421	0.648	1.557	1.965	2.394	1.958	1.724	2.107	2.789	1.181	1.133	1.734	0.987	1.192	1.262	2.156
10353	chr4	106850179	106852626	+	0	NA	Intergenic	Intergenic	-46395	NM_001347159	329910	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	9.981	11.871	3.450	10.332	4.347	2.106	7.551	8.249	5.939	10.337	6.379	4.262	7.864	9.922	8.532	9.371	4.823	8.994	7.126	5.515	4.564	8.494	6.267	5.939	15.093
1882	chr11	3165221	3168915	+	0	NA	intron (NM_030207, intron 7 of 32)	intron (NM_030207, intron 7 of 32)	26395	NM_030207	78887	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	nan	6.336	3.563	5.819	6.830	4.617	5.530	5.141	4.156	6.502	4.984	3.593	3.605	5.910	4.924	5.741	5.624	5.812	4.649	nan	5.030	4.443	7.084	7.584	6.561
1421	chr10	74591656	74593433	+	0	NA	intron (NM_001142740, intron 27 of 31)	B3|SINE|B2	-374687	NM_010311	14687	Mm.32595	NM_010311	ENSMUSG00000040009	Gnaz	AI847979|Gz	guanine nucleotide binding protein, alpha z subunit	protein-coding	3.757	1.117	0.334	nan	2.978	3.458	2.717	3.303	2.180	2.655	1.712	2.067	2.217	3.697	nan	3.737	2.605	4.007	nan	1.117	0.828	1.641	0.917	0.963	4.025
7819	chr19	46122158	46124238	+	0	NA	Intergenic	(GGA)n|Simple_repeat|Simple_repeat	-8701	NM_007703	12686	Mm.21806	NM_007703	ENSMUSG00000038754	Elovl3	CIN-2|Cig30	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3	protein-coding	3.549	0.834	0.653	nan	1.984	1.609	3.409	2.725	1.936	1.932	1.121	0.934	2.538	3.742	2.456	2.994	6.259	nan	0.594	1.193	0.951	0.627	0.788	1.198	4.433
4033	chr13	42244780	42245760	+	0	NA	Intergenic	MIRb|SINE|MIR	-56206	NM_010104	13614	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	5.197	3.115	0.868	1.921	1.740	0.508	3.684	5.634	1.688	1.579	3.982	0.895	1.260	3.507	2.792	2.966	2.135	nan	3.017	2.369	0.955	1.803	3.434	1.207	2.980
6321	chr17	8137751	8139163	+	0	NA	intron (NM_026611, intron 4 of 8).2	RLTR13C1|LTR|ERVK	9331	NM_001083938	100037283	Mm.426736	NM_001083938	ENSMUSG00000095687	Rnaset2a	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2A	protein-coding	3.316	3.802	1.451	4.167	0.403	0.612	3.216	2.189	2.969	2.386	1.341	2.722	4.569	2.752	5.386	5.517	nan	3.921	nan	0.886	0.623	3.825	0.959	0.867	4.206
3021	chr11	116969612	116972045	+	0	NA	intron (NM_172948, intron 10 of 16)	intron (NM_172948, intron 10 of 16)	51965	NM_172948	268510	Mm.35141	NM_172948	ENSMUSG00000043857	Mgat5b	C330018B01|GnT-IX|mGnTVB	mannoside acetylglucosaminyltransferase 5, isoenzyme B	protein-coding	5.308	4.166	1.751	5.777	5.165	3.478	2.678	3.854	3.681	4.240	3.410	1.368	4.529	6.794	4.833	5.423	2.904	5.546	1.259	nan	1.636	1.882	0.873	0.742	4.663
8340	chr2	71532573	71534991	+	0	NA	3' UTR (NM_010053, exon 3 of 3)	3' UTR (NM_010053, exon 3 of 3)	4109	NR_002854	111970	Mm.4543	NR_002854		Dlx1as	Dix1as|Dlx1os	distal-less homeobox 1, antisense	ncRNA	1.548	1.403	0.728	1.376	0.485	0.481	0.987	1.614	0.999	1.752	0.490	0.663	3.398	1.878	2.695	2.286	2.122	2.295	1.200	1.423	1.414	2.712	0.563	0.598	3.980
7895	chr19	56196543	56197651	+	0	NA	Intergenic	Intergenic	-90815	NM_001329936	226243	Mm.25791	NM_146101	ENSMUSG00000025075	Habp2	AI035669|FSAP|HABP|HGFAL|PHBP	hyaluronic acid binding protein 2	protein-coding	2.254	nan	0.461	0.783	0.345	0.109	7.136	8.390	0.749	0.621	2.548	1.137	4.034	4.179	3.903	4.995	4.506	3.207	0.203	0.259	0.251	0.969	0.263	0.126	3.091
14251	chr8	63823518	63827487	+	0	NA	Intergenic	RMER16A3|LTR|ERVK	126668	NM_001195687	244495	Mm.485331	NM_001195687	ENSMUSG00000094443	Sgol2b	EG244495|Gm4975|Sgo2B	shugoshin like 2b (S. pombe)	protein-coding	1.484	0.535	0.712	1.381	2.170	1.090	2.692	4.260	2.416	2.506	1.092	0.755	3.260	3.417	2.443	2.545	2.338	2.278	nan	0.688	0.309	0.743	0.394	0.434	nan
7883	chr19	55171957	55178093	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-5860	NM_009348	21684	Mm.42139	NM_009348	ENSMUSG00000024979	Tectb	Tctnb	tectorin beta	protein-coding	2.673	nan	0.925	6.395	1.826	0.964	5.883	4.107	5.013	8.822	2.148	2.585	2.456	4.132	4.333	6.470	2.549	3.492	1.258	1.432	1.015	1.981	1.992	1.540	nan
14198	chr8	46413945	46419688	+	0	NA	Intergenic	RMER4B|LTR|ERVK	-54221	NM_007981	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	7.370	5.304	2.695	6.040	5.705	3.286	2.077	3.991	4.175	5.186	0.987	1.232	6.278	7.055	5.201	7.763	8.090	4.908	1.410	1.675	1.345	1.840	1.855	1.674	6.090
8569	chr2	119074577	119077888	+	0	NA	exon (NM_029617, exon 9 of 24)	exon (NM_029617, exon 9 of 24)	29113	NM_029617	76464	Mm.202518	NM_029617	ENSMUSG00000027326	Knl1	2310043D08Rik|5730505K17Rik|Casc5	kinetochore scaffold 1	protein-coding	6.204	1.477	0.564	3.801	1.386	1.246	6.298	8.357	2.861	3.782	3.018	1.913	4.629	5.574	5.795	8.184	4.215	6.615	2.502	0.915	0.907	2.127	1.805	1.314	10.502
2670	chr11	94901435	94904026	+	0	NA	Intergenic	RLTR40|LTR|ERVK	-33494	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	7.377	nan	1.102	7.050	4.051	2.033	6.221	8.791	5.169	6.953	3.503	2.122	5.372	9.920	6.566	8.513	5.748	6.236	3.301	nan	2.440	3.836	nan	nan	9.149
5100	chr15	34011646	34014733	+	0	NA	Intergenic	Intergenic	-69530	NM_026002	67154	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	10.728	11.867	4.053	10.409	3.513	2.315	9.417	10.643	5.358	9.722	5.412	3.486	10.128	9.312	11.053	10.499	7.407	10.711	4.683	2.612	2.065	5.545	3.077	2.749	13.112
15643	chr9	123591391	123593964	+	0	NA	TTS (NM_030692)	TTS (NM_030692)	39888	NM_011731	22599	Mm.41963	NM_011731	ENSMUSG00000025243	Slc6a20b	AA986306|Sit1|Slc6a20|XT3|Xtrp3	solute carrier family 6 (neurotransmitter transporter), member 20B	protein-coding	2.017	1.074	0.338	2.496	nan	0.751	nan	nan	nan	nan	1.893	0.582	nan	2.771	nan	3.853	1.280	2.580	0.834	0.636	0.250	0.388	0.408	0.297	2.018
11951	chr5	147111381	147112697	+	0	NA	TTS (NM_181730)	TTS (NM_181730)	34693	NM_009087	20018	Mm.317557	NM_009087	ENSMUSG00000029642	Polr1d	1110003G10Rik|AC19|RPA16|Rpo1-3	polymerase (RNA) I polypeptide D	protein-coding	4.428	2.676	1.142	2.765	2.092	1.995	4.138	2.773	3.210	4.433	1.106	0.895	3.481	4.702	4.937	4.896	2.737	4.030	1.104	1.628	0.613	0.623	1.693	0.998	4.630
930	chr1	181496659	181523526	+	0	NA	3' UTR (NM_207280, exon 1 of 1)	3' UTR (NM_207280, exon 1 of 1)	1359	NM_207280	403180	Mm.220754	NM_207280	ENSMUSG00000050625	Ccdc121	6530421E24Rik|Gm755	coiled-coil domain containing 121	protein-coding	2.197	10.818	6.879	1.809	1.482	1.063	1.441	1.444	1.949	1.767	0.804	0.803	1.788	nan	1.565	2.570	2.290	2.200	0.900	0.868	0.612	1.024	0.729	0.540	1.737
3848	chr13	13660976	13670600	+	0	NA	intron (NM_010748, intron 18 of 52)	intron (NM_010748, intron 18 of 52)	75379	NM_010748	17101	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	6.040	2.867	1.152	3.890	4.978	2.444	6.621	6.338	3.643	4.888	1.821	1.121	5.764	9.093	6.162	5.570	4.074	5.631	0.800	0.959	0.753	0.849	0.712	0.467	nan
5274	chr15	66870622	66872218	+	0	NA	Intergenic	Intergenic	-19973	NM_018865	22402	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	7.706	12.951	3.708	5.037	3.386	2.394	7.502	15.085	3.330	3.542	4.084	1.460	7.885	8.237	7.687	6.400	5.601	5.804	4.487	3.388	2.703	6.273	3.527	2.858	6.470
2972	chr11	114993224	114996908	+	0	NA	Intergenic	RLTR13B1|LTR|ERVK	-5180	NM_145437	217305	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	5.465	8.043	4.790	3.039	2.600	2.099	nan	nan	2.326	nan	2.373	0.649	1.077	2.559	1.908	1.858	1.540	nan	0.888	nan	1.620	0.610	0.538	0.648	2.708
648	chr1	135953979	135980233	+	0	NA	exon (NM_177642, exon 15 of 27)	exon (NM_177642, exon 15 of 27)	39236	NM_177642	226438	Mm.119675	NM_177642	ENSMUSG00000051985	Igfn1	9830123M21Rik	immunoglobulin-like and fibronectin type III domain containing 1	protein-coding	12.825	9.308	3.583	8.729	5.642	3.049	9.708	9.561	7.504	8.714	4.658	5.108	10.796	11.629	10.479	15.405	9.103	10.710	8.853	5.543	3.828	9.694	6.452	4.612	13.037
12855	chr6	146380564	146382527	+	0	NA	intron (NM_010586, intron 14 of 55)	intron (NM_010586, intron 14 of 55)	120678	NM_010586	16439	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	2.433	1.620	0.675	2.263	1.429	0.661	3.405	3.073	2.438	3.462	4.285	1.325	3.528	5.763	6.515	7.299	3.981	2.830	0.734	nan	0.308	nan	0.134	0.103	3.432
6617	chr17	40957955	40959091	+	0	NA	intron (NM_008650, intron 11 of 12)	intron (NM_008650, intron 11 of 12)	23838	NM_008650	17850	Mm.259884	NM_008650	ENSMUSG00000023921	Mut	D230010K02Rik|Mcm	methylmalonyl-Coenzyme A mutase	protein-coding	3.759	0.361	0.426	1.610	3.629	3.217	5.760	4.002	3.118	2.462	1.521	1.041	4.808	5.623	2.784	3.527	4.423	2.509	0.457	0.586	0.893	0.247	0.418	0.712	2.074
6627	chr17	43359473	43363227	+	0	NA	Intergenic	Intergenic	-28116	NM_001081178	224792	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	3.370	0.833	0.639	1.900	2.184	1.411	7.014	4.941	2.901	2.990	1.780	2.801	4.840	5.645	4.826	4.615	3.739	4.597	0.766	0.848	0.613	0.402	1.183	0.633	3.419
15195	chr9	64617138	64625950	+	0	NA	intron (NM_001134399, intron 5 of 24)	intron (NM_001134399, intron 5 of 24)	116212	NM_017382	53869	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	2.001	0.885	0.666	1.706	1.573	0.889	1.318	2.313	1.326	1.922	0.678	0.551	1.108	2.575	nan	1.710	0.917	2.411	nan	3.241	2.914	7.256	4.001	3.387	1.718
9056	chr2	169457642	169467283	+	0	NA	Intergenic	Intergenic	-171184	NM_080455	228911	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	4.618	1.245	0.708	1.608	1.151	0.729	5.842	8.980	2.570	2.712	2.949	3.998	3.346	nan	3.499	3.701	4.262	nan	nan	2.894	2.062	2.385	5.356	4.696	nan
4453	chr14	8744197	8747255	+	0	NA	Intergenic	ETnERV-int|LTR|ERVK	79336	NR_045968	74859	Mm.84041	NR_045968	ENSMUSG00000097898	4930455B14Rik	1700027C12Rik	RIKEN cDNA 4930455B14 gene	ncRNA	3.224	1.898	1.052	2.073	1.021	0.495	1.067	1.721	1.237	1.467	1.472	0.848	0.919	1.438	1.796	2.105	1.207	1.885	0.935	1.069	0.550	0.851	0.546	0.320	5.144
13047	chr7	28270393	28277084	+	0	NA	Intergenic	Intergenic	-3968	NM_001177427	434156	Mm.118535	NM_001177427	ENSMUSG00000070705	Eid2b	3010005C08Rik	EP300 interacting inhibitor of differentiation 2B	protein-coding	10.193	7.738	2.980	9.198	7.043	4.705	9.844	12.733	6.242	9.069	6.969	4.456	9.678	12.495	9.388	10.082	9.052	9.207	4.186	3.083	2.880	4.188	3.061	3.282	12.222
12753	chr6	129158030	129190362	+	0	NA	Intergenic	MLTR25A|LTR|ERVK	-6419	NM_053109	93694	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	9.238	11.118	6.465	7.507	5.083	2.957	4.345	nan	5.499	5.989	8.418	4.274	5.526	5.396	4.558	nan	4.943	6.494	2.437	4.524	2.995	3.561	2.366	1.903	3.673
8522	chr2	113234467	113238682	+	0	NA	intron (NR_035479, intron 2 of 3)	MTD|LTR|ERVL-MaLR	16387	NR_035479	100316776		NR_035479	ENSMUSG00000093336	Mir1954	mmu-mir-1954	microRNA 1954	ncRNA	5.755	1.322	1.058	0.963	1.094	0.518	5.491	4.042	2.570	2.030	3.742	2.056	nan	4.518	4.789	6.485	5.736	3.636	3.368	2.250	1.267	2.454	4.267	3.285	3.686
4973	chr14	121497009	121504339	+	0	NA	intron (NM_053079, intron 1 of 22)	B3A|SINE|B2	4580	NM_053079	56643	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	4.736	1.356	0.870	4.095	3.821	2.142	3.443	5.074	2.761	4.106	1.263	0.919	4.075	7.597	nan	6.068	3.118	6.018	3.395	2.515	1.454	4.038	3.507	2.398	5.051
1589	chr10	90703026	90705666	+	0	NA	intron (NM_001177396, intron 3 of 11)	intron (NM_001177396, intron 3 of 11)	-125308	NM_001347054	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	4.030	1.133	0.757	3.064	2.363	1.307	2.447	2.506	3.132	3.159	5.188	2.127	3.566	3.593	1.972	3.151	3.026	4.094	0.624	0.882	0.929	nan	nan	0.629	4.185
7657	chr19	24414928	24419416	+	0	NA	intron (NM_008846, intron 3 of 14)	intron (NM_008846, intron 3 of 14)	60302	NM_026520	68034	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|ENSMUSG00000051082|Gm9849	family with sequence similarity 122, member A	protein-coding	nan	0.619	0.407	nan	5.514	3.761	5.652	nan	4.159	5.542	nan	0.722	3.580	4.773	6.340	5.817	6.091	6.195	nan	0.573	0.667	1.099	nan	0.974	6.870
7245	chr18	55019784	55021974	+	0	NA	Intergenic	Intergenic	-30699	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	5.309	nan	1.128	nan	2.838	1.222	4.513	3.752	4.249	3.934	5.513	2.904	8.004	5.390	4.888	5.639	5.202	6.091	nan	0.690	0.335	nan	0.681	0.331	nan
15648	chr9	123846345	123849398	+	0	NA	intron (NM_148925, intron 1 of 18)	Lx9|LINE|L1	3790	NM_148925	17281	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	4.929	3.234	1.888	3.710	2.881	1.478	nan	2.170	nan	3.118	4.671	1.813	nan	2.559	1.881	nan	2.419	2.406	0.521	2.404	1.243	0.349	0.592	0.309	1.979
9744	chr3	121286249	121288211	+	0	NA	Intergenic	Intergenic	-4587	NM_024178	66789	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	5.752	1.436	0.493	4.069	11.201	5.430	5.748	5.097	5.203	8.291	3.961	2.960	5.733	12.439	5.542	nan	4.055	5.275	1.058	1.633	1.285	0.545	1.263	1.024	4.188
1059	chr1	195332048	195350607	+	0	NA	Intergenic	MMVL30-int|LTR|ERV1	-164612	NM_007758	12902	Mm.235387	NM_007758	ENSMUSG00000026616	Cr2	C3DR|CD21|CD35|Cr-1|Cr-2|Cr1	complement receptor 2	protein-coding	0.595	0.915	0.383	0.438	0.175	0.102	1.529	1.605	0.921	0.636	8.296	3.061	0.604	0.574	0.672	nan	1.186	0.721	1.355	0.819	0.450	1.253	nan	0.922	nan
2683	chr11	95273482	95278723	+	0	NA	intron (NM_177619, intron 12 of 12)	intron (NM_177619, intron 12 of 12)	14573	NM_053093	93670	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	7.079	5.958	3.769	5.105	5.658	3.630	4.005	4.613	4.332	4.757	4.271	2.870	3.918	6.676	4.236	4.906	4.818	4.476	3.176	nan	1.834	2.006	nan	nan	4.200
11284	chr5	65905235	65906377	+	0	NA	Intergenic	RLTR22_Mur|LTR|ERVK	42237	NM_001081105	74734	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	3.873	3.110	1.655	2.722	1.660	0.930	3.452	6.403	3.665	3.012	5.644	4.646	4.700	4.069	4.904	4.633	5.387	4.065	8.464	3.437	1.300	2.684	3.932	2.848	2.007
15212	chr9	65667915	65669310	+	0	NA	Intergenic	Intergenic	-7936	NM_010952	18247	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	5.229	0.528	0.684	3.067	3.339	2.347	3.744	4.907	3.595	3.646	3.320	2.677	5.738	4.109	nan	3.881	5.747	4.306	nan	2.030	1.345	0.699	1.307	2.026	3.233
6698	chr17	47691871	47693601	+	0	NA	intron (NM_001290337, intron 1 of 6)	intron (NM_001290337, intron 1 of 6)	2000	NM_001290337	381104	Mm.392206	NM_001290337	ENSMUSG00000079444	Prickle4	Gm939	prickle planar cell polarity protein 4	protein-coding	0.671	5.688	6.965	0.794	0.917	0.483	1.310	0.673	0.419	0.608	0.666	0.227	0.350	nan	0.718	0.657	1.500	0.332	0.559	0.421	0.960	0.413	0.198	0.427	0.778
13880	chr7	148190954	148197813	+	0	NA	Intergenic	Intergenic	2879548	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	nan	nan	1.103	nan	2.406	2.099	1.595	2.743	nan	2.047	9.786	3.853	2.324	2.273	2.160	2.704	2.395	1.930	3.978	2.798	2.903	4.299	nan	3.454	nan
8603	chr2	121178420	121181026	+	0	NA	intron (NR_077245, intron 6 of 18)	L1_Mur3|LINE|L1	8555	NM_001290824	51885	Mm.383499	NM_153387	ENSMUSG00000027263	Tubgcp4	4932441P04Rik|76p|D2Ertd435e|GCP-4	tubulin, gamma complex associated protein 4	protein-coding	9.002	3.066	2.550	3.322	4.402	2.316	7.061	9.566	2.917	5.002	4.444	2.038	5.252	8.530	3.561	6.093	9.585	4.197	3.110	4.505	3.089	1.827	6.033	4.396	nan
5206	chr15	58763317	58766036	+	0	NA	Intergenic	(TAGA)n|Simple_repeat|Simple_repeat	58751	NM_175212	74868	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	10.255	10.089	3.067	7.985	4.755	2.725	9.504	12.369	5.548	7.304	6.372	3.812	8.414	10.258	8.600	nan	7.541	8.042	3.984	2.248	1.865	3.995	2.477	2.130	10.765
10615	chr4	131944796	131947375	+	0	NA	intron (NM_001128606, intron 13 of 17)	ID4_|SINE|ID	24314	NM_001201367	623230	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	3.466	2.056	1.820	1.939	5.941	5.052	4.805	4.633	3.395	2.541	3.656	3.900	3.217	4.230	3.099	2.478	1.875	2.774	3.456	2.083	1.731	1.604	3.522	2.746	1.775
12676	chr6	121087572	121091804	+	0	NA	intron (NM_001270475, intron 1 of 31)	RLTR10C|LTR|ERVK	-8061	NR_138097	194401	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	0.502	0.762	0.684	0.699	0.362	0.059	0.596	0.970	0.384	0.401	2.356	2.001	0.475	nan	0.436	0.855	0.630	0.463	5.525	2.882	2.249	5.666	4.265	3.179	0.490
7057	chr18	21126313	21129461	+	0	NA	3' UTR (NM_001033445, exon 6 of 6)	3' UTR (NM_001033445, exon 6 of 6)	55543	NM_008586	17288	Mm.2682	NM_008586	ENSMUSG00000024313	Mep1b	Mep-1b	meprin 1 beta	protein-coding	5.660	3.062	1.780	4.746	5.414	4.013	2.378	2.973	3.448	3.555	2.807	1.223	2.969	4.512	2.212	3.268	3.821	3.582	0.663	2.036	2.336	0.946	1.497	0.933	2.069
3349	chr12	57406216	57413728	+	0	NA	intron (NM_001164370, intron 8 of 9)	intron (NM_001164370, intron 8 of 9)	136149	NM_008259	15375	Mm.4578	NM_008259	ENSMUSG00000035451	Foxa1	Hnf-3a|Hnf3a|Tcf-3a|Tcf3a	forkhead box A1	protein-coding	1.010	nan	0.363	0.903	0.838	0.409	1.229	0.880	1.319	1.239	0.527	0.516	1.076	1.601	nan	nan	1.921	nan	8.237	2.636	1.743	5.466	1.283	1.483	1.350
3644	chr12	102231437	102238042	+	0	NA	exon (NM_172152, exon 11 of 17)	exon (NM_172152, exon 11 of 17)	-48335	NM_177620	217835	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	1.816	10.099	3.590	1.534	0.968	0.449	1.628	2.603	1.423	1.546	1.310	1.093	1.850	2.391	2.457	3.777	3.255	nan	0.792	1.013	0.517	1.120	0.655	0.390	4.886
9980	chr4	35120542	35121543	+	0	NA	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-31013	NM_199157	387510	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	1.893	0.502	0.653	2.784	1.012	0.864	2.759	1.866	1.594	1.462	0.850	1.658	3.288	4.283	3.552	3.184	1.299	3.026	0.585	0.510	0.122	0.650	0.175	0.282	2.243
2019	chr11	20978575	20983729	+	0	NA	Intergenic	RLTR13B1|LTR|ERVK	-110172	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	7.642	nan	1.173	4.911	4.750	3.506	5.735	6.828	6.021	5.752	4.186	2.553	7.271	8.226	5.540	5.669	6.426	5.910	1.294	1.357	1.073	1.829	1.198	0.888	3.589
15548	chr9	116054359	116056818	+	0	NA	intron (NM_028638, intron 14 of 14)	intron (NM_028638, intron 14 of 14)	119775	NM_029575	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	8.904	4.727	2.141	4.904	2.247	0.998	3.569	4.822	4.649	5.715	1.719	2.601	4.789	4.658	4.918	7.299	4.038	8.031	1.748	1.709	1.218	2.207	nan	0.312	7.947
6179	chr16	87699185	87701787	+	0	NA	intron (NM_007520, intron 1 of 4)	intron (NM_007520, intron 1 of 4)	1532	NM_007520	12013	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	10.995	nan	1.093	9.963	5.542	3.425	5.584	11.904	6.389	13.810	7.006	3.838	9.794	12.054	9.546	11.722	7.736	11.323	4.593	2.980	1.692	nan	3.030	2.156	12.955
12701	chr6	125265932	125276743	+	0	NA	intron (NR_015527, intron 3 of 3)	intron (NR_015527, intron 3 of 3)	5812	NR_015527	73870	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	8.954	nan	0.433	6.226	6.130	3.317	11.385	11.732	4.995	8.095	6.567	2.728	10.825	15.755	8.194	11.753	9.357	9.025	4.726	5.077	3.213	6.486	5.230	3.187	11.244
11650	chr5	120984498	120988023	+	0	NA	intron (NM_001302345, intron 2 of 20)	intron (NM_001302345, intron 2 of 20)	22224	NM_001302345	19894	Mm.181166	NM_011286	ENSMUSG00000029608	Rph3a	2900002P20Rik|AU022689|AW108370	rabphilin 3A	protein-coding	0.786	1.045	0.427	1.510	0.416	0.428	0.527	0.385	0.576	0.989	0.279	0.383	0.341	0.814	0.642	1.698	0.334	0.814	nan	nan	1.138	4.584	nan	0.332	1.343
9989	chr4	40668161	40672506	+	0	NA	Intergenic	Intergenic	32583	NM_025545	66408	Mm.430710	NM_025545	ENSMUSG00000028411	Aptx	2410016G21Rik|AA388047|FHA-HIT	aprataxin	protein-coding	8.514	10.485	3.160	12.421	4.038	3.084	6.907	7.024	8.191	11.295	6.610	4.257	7.741	9.341	9.993	11.493	5.518	11.163	6.916	1.870	2.567	5.322	2.475	2.918	13.319
361	chr1	82778120	82784870	+	0	NA	Intergenic	PB1D7|SINE|Alu	-13039	NM_025453	66261	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	12.355	0.680	0.384	5.047	4.841	3.444	8.452	5.212	6.013	8.060	0.937	1.371	10.449	10.821	6.820	9.752	8.627	8.221	nan	nan	0.857	0.794	nan	0.352	8.015
202	chr1	58157353	58160115	+	0	NA	intron (NM_023617, intron 17 of 34)	intron (NM_023617, intron 17 of 34)	45598	NM_023617	71724	Mm.20108	NM_023617	ENSMUSG00000064294	Aox3	1200011D03Rik|AI326299|Aoh1|Aoh2	aldehyde oxidase 3	protein-coding	7.445	0.985	0.917	4.022	4.500	3.597	6.751	6.686	4.480	5.290	1.734	1.223	9.523	7.770	5.052	8.794	8.973	4.900	0.616	1.185	1.102	1.544	0.652	0.642	4.242
3282	chr12	35971506	35972921	+	0	NA	Intergenic	Intergenic	-20712	NM_011783	23795	Mm.7244	NM_011783	ENSMUSG00000020581	Agr2	Agr2h|Gob-4|HAG-2|XAG-2|mAG-2	anterior gradient 2	protein-coding	6.078	1.446	0.778	4.502	3.742	1.740	2.211	3.146	3.501	4.111	4.434	1.775	2.520	4.155	3.682	3.827	2.305	6.510	nan	1.473	0.128	0.732	0.843	0.556	3.500
15878	chrX	163823336	163825056	+	0	NA	Intergenic	Intergenic	-62864	NM_028842	74264	Mm.39304	NM_028842	ENSMUSG00000083695	Rnf138rt1	-	ring finger protein 138, retrogene 1	protein-coding	2.506	0.274	0.230	1.186	1.517	0.769	1.905	2.293	1.527	nan	0.770	0.275	2.789	3.007	2.377	5.544	2.826	1.708	0.523	0.473	0.641	0.255	0.186	0.408	1.600
8542	chr2	117636463	117638445	+	0	NA	Intergenic	L1ME1|LINE|L1	175348	NR_126427	100504728	Mm.413174	NR_126427		Gm13985	OTTMUSG00000015235	predicted gene 13985	ncRNA	2.436	0.526	0.243	1.098	0.808	0.662	3.328	3.218	2.630	2.626	4.880	0.920	4.905	4.782	3.967	nan	3.690	2.523	0.584	0.420	0.115	0.341	0.367	0.194	nan
11657	chr5	121995004	121996660	+	0	NA	intron (NM_001312908, intron 2 of 22)	L1MC5|LINE|L1	51993	NM_007804	13048	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2|ENSMUSG00000072641	cut-like homeobox 2	protein-coding	7.684	12.179	4.748	13.231	7.664	7.260	9.344	7.487	7.101	18.702	7.901	4.621	7.887	11.381	10.315	10.789	6.407	11.119	5.918	3.593	7.154	7.569	nan	10.577	13.850
1984	chr11	11796925	11799039	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	10980	NM_021891	60530	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	4.754	0.982	0.464	0.460	0.314	0.079	8.605	8.511	1.379	1.211	0.564	0.337	7.513	5.601	5.941	8.019	7.053	2.286	0.646	nan	0.455	1.140	0.877	0.745	3.262
14309	chr8	73194448	73200077	+	0	NA	intron (NM_001317391, intron 3 of 15)	intron (NM_001317391, intron 3 of 15)	156278	NM_001317391	16795	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	6.668	8.660	3.351	8.004	5.454	4.232	nan	9.573	nan	5.785	4.000	2.624	7.115	7.633	6.934	8.506	5.969	6.900	2.922	2.374	2.886	nan	2.226	2.974	8.705
9648	chr3	104810454	104817689	+	0	NA	intron (NM_001163441, intron 2 of 20)	RSINE1|SINE|B4	4234	NM_008619	17454	Mm.1597	NM_008619	ENSMUSG00000002227	Mov10	C77703|Mov-10	Moloney leukemia virus 10	protein-coding	4.247	0.932	0.419	3.186	1.459	0.762	2.234	1.303	2.496	2.792	0.839	0.605	1.427	2.835	nan	2.612	1.614	6.810	0.718	0.467	0.352	0.717	0.671	0.555	6.553
7491	chr19	5559530	5563031	+	0	NA	promoter-TSS (NM_019935)	promoter-TSS (NM_019935)	-705	NM_019935	18426	Mm.280225	NM_019935	ENSMUSG00000024922	Ovol1	BB147136|Ovo1|movo1	ovo like zinc finger 1	protein-coding	3.326	0.871	0.447	4.548	2.464	2.328	6.413	9.067	nan	5.574	3.658	2.641	5.485	8.390	7.460	7.566	5.489	6.143	2.419	0.971	1.155	5.419	2.263	2.658	10.015
5558	chr15	88905548	88910023	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	45591	NM_145478	223775	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	10.316	11.650	2.606	10.775	3.955	2.440	10.933	16.848	nan	9.264	6.158	3.304	12.276	11.043	12.449	12.119	7.055	9.711	nan	2.770	2.460	nan	3.522	3.042	13.937
307	chr1	74435739	74440133	+	0	NA	3' UTR (NM_001310662, exon 24 of 24)	3' UTR (NM_001310662, exon 24 of 24)	28552	NM_009509	22349	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	7.161	15.983	4.450	10.744	3.279	2.807	5.740	6.370	5.581	10.413	6.001	4.153	7.944	7.141	8.481	13.259	7.340	9.676	nan	nan	2.680	4.473	nan	2.863	12.208
3472	chr12	78277247	78279077	+	0	NA	intron (NM_145965, intron 1 of 22)	B3|SINE|B2	51507	NM_145965	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	3.038	5.969	3.331	2.752	0.923	0.642	4.552	4.278	2.009	2.150	1.731	2.054	4.308	4.116	3.298	5.183	5.934	2.252	1.654	2.330	1.151	1.925	2.860	2.629	4.415
8333	chr2	70769188	70772713	+	0	NA	intron (NM_172664, intron 2 of 19)	intron (NM_172664, intron 2 of 19)	54530	NM_172664	228012	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0.787	8.929	9.087	0.732	0.406	0.531	0.675	0.732	0.484	0.554	0.309	0.320	0.329	0.314	0.536	0.645	0.769	0.857	2.243	2.112	2.790	2.642	2.363	2.481	0.572
8630	chr2	126515730	126523443	+	0	NA	Intergenic	Lx7|LINE|L1	-28033	NM_001080944	241633	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	A530043E15|Im	ATPase, class I, type 8B, member 4	protein-coding	7.578	0.896	0.662	3.929	3.456	2.574	6.075	5.102	6.485	7.383	0.689	0.829	10.502	8.448	7.222	9.337	9.492	7.195	nan	0.745	0.761	0.454	0.704	0.624	8.729
6229	chr16	93493257	93494667	+	0	NA	Intergenic	Intergenic	-35090	NR_040494	72264	Mm.396204	NR_040494	ENSMUSG00000099968	1700029J03Rik	-	RIKEN cDNA 1700029J03 gene	ncRNA	3.426	0.595	0.166	0.613	0.689	0.105	2.150	1.857	nan	2.293	3.341	0.739	3.093	3.958	2.573	2.944	2.781	nan	nan	0.854	0.683	1.879	0.546	0.466	3.677
5836	chr16	17246637	17252426	+	0	NA	intron (NM_178922, intron 1 of 2)	ID4_|SINE|ID	15944	NM_178922	58180	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	7.074	0.758	0.597	0.657	1.433	0.956	2.859	4.344	0.882	nan	0.750	0.424	1.757	2.379	2.489	1.857	2.411	3.122	0.597	0.494	0.742	0.726	0.684	0.660	5.494
10305	chr4	99703978	99707959	+	0	NA	Intergenic	B3|SINE|B2	-9662	NM_001081264	320438	Mm.32408	NM_001081264	ENSMUSG00000073792	Alg6	E230028F23Rik	asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase)	protein-coding	4.337	nan	0.282	3.053	1.823	0.830	3.761	2.043	4.276	5.704	0.646	0.406	5.976	4.345	nan	6.532	4.287	5.394	0.645	2.107	0.969	nan	1.015	0.561	6.699
154	chr1	46940968	46946160	+	0	NA	Intergenic	L1Md_F|LINE|L1	-90055	NM_172653	227059	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	8.555	0.606	0.689	1.358	2.207	1.185	6.107	2.961	2.574	2.703	4.545	2.134	7.322	5.259	3.615	5.668	7.366	nan	nan	0.734	0.737	0.530	0.733	0.437	3.273
1463	chr10	77472170	77474899	+	0	NA	Intergenic	Lx5c|LINE|L1	42279	NM_133998	108707	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	7.648	6.581	3.372	nan	5.936	6.198	6.185	7.377	5.435	8.012	5.829	4.753	5.521	8.833	nan	6.587	6.747	5.291	nan	3.699	4.291	3.546	4.109	4.210	8.881
12552	chr6	103294304	103296508	+	0	NA	Intergenic	Intergenic	-215470	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	1.860	0.893	0.392	1.827	1.614	0.947	5.367	4.655	1.864	1.344	6.316	3.276	2.540	3.903	4.142	1.758	3.135	2.452	nan	0.731	0.502	1.639	0.219	0.303	nan
6796	chr17	66425599	66426847	+	0	NA	intron (NM_001114098, intron 3 of 14)	intron (NM_001114098, intron 3 of 14)	23527	NM_172963	68617	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding	7.390	14.758	2.711	11.940	3.295	3.864	7.578	6.939	4.862	16.234	6.158	3.547	5.706	8.336	9.406	12.404	5.815	8.127	4.974	0.846	4.750	6.153	2.956	6.291	19.110
5320	chr15	74548303	74550901	+	0	NA	intron (NM_174991, intron 16 of 30)	intron (NM_174991, intron 16 of 30)	33406	NM_174991	107831	Mm.43133	NM_174991	ENSMUSG00000034730	Adgrb1	B830018M07Rik|Bai1|R75078|mKIAA4089	adhesion G protein-coupled receptor B1	protein-coding	4.321	nan	0.447	2.663	1.776	1.050	8.457	7.882	2.048	2.650	nan	0.895	7.752	6.216	5.764	6.859	5.720	3.652	0.421	0.741	0.426	nan	0.344	0.312	6.528
15292	chr9	72507162	72515695	+	0	NA	Intergenic	Intergenic	-19469	NM_009359	21778	Mm.14485	NM_009359	ENSMUSG00000090626	Tex9	Gm19407|tsec-1	testis expressed gene 9	protein-coding	5.509	2.788	1.579	4.904	3.809	2.443	6.815	5.737	4.082	6.178	4.182	2.805	6.241	7.548	nan	6.662	5.178	5.502	nan	2.289	3.093	3.776	3.628	3.803	7.891
5699	chr15	101254390	101260051	+	0	NA	Intergenic	Intergenic	-9626	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	3.874	0.624	0.367	1.525	2.644	1.246	3.235	10.705	2.702	4.226	3.350	1.765	3.935	4.352	3.220	nan	2.770	3.186	5.277	3.272	1.424	4.652	7.145	3.548	3.183
2801	chr11	100979330	100982514	+	0	NA	Intergenic	Intergenic	-10305	NM_008986	19285	Mm.21864	NM_008986	ENSMUSG00000004044	Ptrf	2310075E07Rik|AW546441|Cav-p60|Cavin	polymerase I and transcript release factor	protein-coding	5.893	8.826	2.586	7.264	3.747	1.488	6.608	5.832	4.028	6.084	5.600	2.892	4.837	6.298	5.983	6.795	4.725	5.897	5.026	nan	2.018	5.573	nan	nan	8.399
6730	chr17	50612777	50614508	+	0	NA	intron (NM_013880, intron 3 of 5)	L1_Mur3|LINE|L1	-85039	NM_001297747	12228	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	0.552	0.666	1.099	0.363	0.382	0.218	0.420	0.405	0.593	0.550	0.533	0.363	0.307	nan	0.131	0.513	nan	0.475	6.151	8.381	5.428	3.234	9.542	8.287	0.225
15022	chr9	44410330	44414257	+	0	NA	intron (NM_201372, intron 8 of 10)	intron (NM_201372, intron 8 of 10)	4579	NM_024266	75617	Mm.292027	NM_024266	ENSMUSG00000009927	Rps25	2810009D21Rik	ribosomal protein S25	protein-coding	14.125	21.776	11.747	12.126	10.221	8.450	13.629	10.307	9.416	19.465	10.189	6.242	10.789	14.588	nan	nan	7.856	11.816	8.566	6.689	10.192	nan	8.981	11.143	nan
681	chr1	137624533	137638234	+	0	NA	Intergenic	Intergenic	-335072	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	8.644	4.047	1.854	6.723	4.879	3.435	5.831	4.461	4.141	5.867	3.517	1.382	6.969	7.805	6.544	nan	5.097	7.521	3.133	2.713	2.582	3.401	3.867	3.410	nan
8765	chr2	146786596	146788901	+	0	NA	Intergenic	Intergenic	-68141	NM_001033298	228730	Mm.292352	NM_001033298	ENSMUSG00000074749	Kiz	Gm114|Ncrna00153|Plk1s1	kizuna centrosomal protein	protein-coding	2.720	0.772	0.528	1.064	1.274	0.858	0.742	2.253	1.339	1.499	0.533	0.133	4.080	4.866	1.401	1.989	2.407	2.187	nan	0.721	0.266	0.408	0.434	0.264	2.967
9611	chr3	101381159	101383011	+	0	NA	intron (NM_207205, intron 2 of 10)	ORR1G|LTR|ERVL-MaLR	4960	NM_207205	78908	Mm.257997	NM_207205	ENSMUSG00000042035	Igsf3	1700016K10Rik|2810035F16Rik|4833439O17Rik|mKIAA0466	immunoglobulin superfamily, member 3	protein-coding	4.012	0.684	0.314	2.198	1.836	0.543	3.835	3.862	1.813	1.880	nan	0.466	3.861	3.938	4.542	3.595	3.098	5.399	2.919	1.046	0.377	3.663	1.518	0.592	6.755
8222	chr2	38862733	38868907	+	0	NA	intron (NM_010264, intron 3 of 10)	intron (NM_010264, intron 3 of 10)	11990	NR_029904	723903		NR_029904	ENSMUSG00000065578	Mir181b-2	Mirn181b-2|mir-181b-2	microRNA 181b-2	ncRNA	5.152	13.245	5.434	4.146	2.568	1.680	4.757	6.186	3.100	nan	3.012	2.050	4.267	4.138	5.126	6.249	4.647	5.108	4.924	2.621	1.981	3.896	3.480	3.130	6.802
10078	chr4	48694898	48698420	+	0	NA	Intergenic	RMER1C|Other|Other	33145	NM_026509	68016	Mm.133444	NM_026509	ENSMUSG00000028348	Murc	2310039E09Rik	muscle-related coiled-coil protein	protein-coding	1.501	nan	0.641	0.487	0.262	0.211	0.443	1.262	0.950	0.945	1.236	0.605	0.695	0.662	1.014	1.090	1.364	nan	7.353	4.625	2.536	nan	5.980	3.829	1.433
8863	chr2	155717946	155722807	+	0	NA	intron (NM_145537, intron 4 of 10)	intron (NM_145537, intron 4 of 10)	9099	NM_145537	108687	Mm.273706	NM_145537	ENSMUSG00000038312	Edem2	9530090G24Rik|AI327354	ER degradation enhancer, mannosidase alpha-like 2	protein-coding	4.312	0.860	0.359	3.494	1.975	1.262	5.037	5.790	nan	4.820	1.332	1.378	8.376	5.319	5.735	8.071	5.715	5.783	6.126	2.663	2.617	6.247	6.101	5.142	6.298
8373	chr2	75517971	75546497	+	0	NA	Intergenic	RLTR25B|LTR|ERVK	-88055	NR_040635	77269	Mm.389278	NR_040635		9430019J16Rik	-	RIKEN cDNA 9430019J16 gene	ncRNA	7.287	5.207	2.381	nan	4.201	3.131	5.366	7.789	6.297	6.627	4.064	3.336	6.836	7.232	nan	nan	7.034	8.797	2.593	1.347	1.416	1.644	1.388	1.371	nan
11165	chr5	35362342	35364094	+	0	NA	intron (NR_046060, intron 1 of 3)	B1_Mur3|SINE|Alu	1665	NR_046060	74429	Mm.399502	NR_046060	ENSMUSG00000106762	4930478P22Rik	4933405A14Rik	RIKEN cDNA 4930478P22 gene	ncRNA	4.008	1.063	0.731	5.035	2.586	1.420	3.372	5.470	5.541	5.866	5.345	2.550	4.744	5.617	5.799	5.422	nan	5.637	1.761	0.710	0.419	1.287	0.685	0.848	5.656
1029	chr1	193100843	193105958	+	0	NA	Intergenic	Intergenic	26851	NM_145415	215193	Mm.173758	NM_145415	ENSMUSG00000016181	Diexf	AA408296|AW045375|Def	digestive organ expansion factor homolog (zebrafish)	protein-coding	6.253	2.511	0.869	4.403	3.548	2.562	3.619	3.531	3.136	4.121	2.172	1.792	4.551	4.795	4.439	8.719	4.255	5.740	3.221	1.757	1.882	3.311	nan	2.149	6.222
3062	chr11	118188422	118190395	+	0	NA	intron (NM_001112699, intron 3 of 12)	intron (NM_001112699, intron 3 of 12)	23334	NM_001112700	19157	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	3.035	1.707	0.567	5.406	3.494	1.602	nan	2.608	2.764	nan	2.135	1.027	2.300	4.762	4.069	4.737	1.538	5.711	1.208	nan	0.836	3.273	0.507	0.445	5.495
5	chr1	6361581	6364389	+	0	NA	intron (NM_001195732, intron 1 of 4)	intron (NM_001195732, intron 1 of 4)	3654	NM_001195732	620393	Mm.388992	NM_001195732	ENSMUSG00000087247	Fam150a	EG620393	family with sequence similarity 150, member A	protein-coding	4.066	0.590	0.526	1.710	1.445	0.614	0.262	0.540	3.807	4.834	0.924	0.410	2.344	4.361	1.050	3.037	2.280	3.301	0.621	0.519	0.349	0.513	0.853	0.432	2.878
2715	chr11	97010254	97012704	+	0	NA	Intergenic	Intergenic	-2090	NM_031183	83395	Mm.156282	NM_031183	ENSMUSG00000038560	Sp6	1110025J03Rik|AA591031|AI592962|Epfn|Klf14	trans-acting transcription factor 6	protein-coding	9.015	3.524	1.145	8.597	3.573	2.890	5.064	6.629	3.519	9.348	2.695	1.418	4.028	5.645	5.355	7.049	nan	5.933	1.111	nan	2.154	1.502	nan	nan	9.988
12760	chr6	134054164	134057045	+	0	NA	intron (NM_007961, intron 1 of 7)	intron (NM_007961, intron 1 of 7)	19904	NM_007961	14011	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	1.523	1.994	0.896	1.958	0.849	0.300	0.937	3.042	1.322	0.873	7.101	1.418	0.750	0.966	1.846	1.945	1.105	1.481	2.228	1.180	0.414	2.451	1.180	0.723	1.694
2105	chr11	44461541	44470069	+	0	NA	intron (NM_024475, intron 3 of 10)	intron (NM_024475, intron 3 of 10)	4743	NM_024475	79560	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	0.361	7.517	4.756	0.322	0.157	0.085	0.206	nan	0.247	0.235	0.232	0.143	0.127	0.147	0.171	nan	0.271	nan	nan	0.295	0.226	nan	nan	0.266	0.251
3292	chr12	36755524	36756786	+	0	NA	Intergenic	Intergenic	-60050	NR_039558	100628578		NR_039558	ENSMUSG00000092998	Mir5099	mmu-mir-5099|mu-mir-5099	microRNA 5099	ncRNA	4.295	3.545	2.589	2.737	2.681	1.862	2.280	3.100	2.868	2.633	1.079	0.827	3.413	3.209	2.906	4.338	7.001	4.096	nan	1.547	1.610	0.785	1.451	1.115	4.208
12631	chr6	116583820	116591131	+	0	NA	Intergenic	L1_Mus3|LINE|L1	-4531	NM_146446	258438	Mm.357743	NM_146446	ENSMUSG00000050654	Olfr215	MOR119-2	olfactory receptor 215	protein-coding	4.314	1.373	0.403	5.916	3.268	1.860	4.524	9.217	4.544	4.332	1.216	2.506	5.751	8.981	6.571	8.331	3.323	7.968	1.334	0.438	0.539	1.718	nan	0.460	5.381
3455	chr12	77632072	77643585	+	0	NA	Intergenic	Intergenic	227687	NM_001252616	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	3.086	3.102	1.111	3.065	1.909	0.978	1.881	4.145	2.111	2.647	7.576	4.824	1.733	nan	1.835	nan	1.629	1.626	5.066	2.821	2.226	5.395	4.305	3.095	2.617
554	chr1	128722956	128734807	+	0	NA	Intergenic	B4|SINE|B4	-136582	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	6.710	nan	0.573	2.341	1.773	1.119	6.281	1.715	3.728	4.584	0.681	0.439	6.229	4.445	5.230	9.062	4.680	nan	nan	0.519	0.419	0.532	0.404	0.257	6.904
1957	chr11	6962629	6966186	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-99082	NM_009622	432530	Mm.259733	NM_009622	ENSMUSG00000020431	Adcy1	AC1|D11Bwg1392e|I-AC|brl|mKIAA4070	adenylate cyclase 1	protein-coding	nan	0.395	0.020	0.275	0.127		0.210	0.097	0.111	0.096	0.095	0.085	0.078	0.143	0.175	0.346	0.128	0.273	3.501	nan	1.719	5.016	4.714	3.836	0.392
9606	chr3	101317332	101335668	+	0	NA	Intergenic	Intergenic	-38561	NM_013486	12481	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	4.310	0.646	0.339	3.101	2.649	1.609	8.546	6.160	4.629	4.503	nan	3.225	7.921	6.358	5.673	5.950	4.278	5.974	1.582	1.073	0.949	2.010	1.453	1.203	5.923
5894	chr16	21830624	21834165	+	0	NA	Intergenic	Intergenic	38047	NR_037957	100043489	Mm.326535	NR_037957	ENSMUSG00000097290	1300002E11Rik	1500026P21Rik	RIKEN cDNA 1300002E11 gene	ncRNA	1.946	0.558	0.292	2.161	1.273	0.685	2.893	4.911	1.440	nan	0.554	0.747	2.676	2.271	3.733	4.751	2.961	2.994	5.488	3.290	3.096	3.311	6.745	5.505	2.531
552	chr1	128568263	128574488	+	0	NA	Intergenic	Intergenic	20924	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	4.517	nan	0.379	2.703	5.207	2.595	4.833	2.805	2.626	3.763	1.112	0.465	5.397	7.067	4.272	7.238	4.220	nan	nan	0.645	0.305	0.344	0.580	0.428	3.170
14085	chr8	25576600	25578676	+	0	NA	TTS (NM_173012)	TTS (NM_173012)	19849	NM_173012	270035	Mm.268349	NM_173012	ENSMUSG00000037363	Letm2	6030453H13|D030041N04Rik	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding	1.352	nan	0.591	0.988	0.587	0.293	0.667	0.692	0.597	0.706	6.184	2.090	0.380	0.792	0.613	1.161	0.564	1.154	0.262	0.827	0.523	nan	0.432	0.339	0.520
10031	chr4	44682986	44695789	+	0	NA	intron (NM_008782, intron 3 of 9)	MER102c|DNA|hAT-Charlie	-13413	NR_073462	70602	Mm.491142	NR_073462	ENSMUSG00000103995	5730488B01Rik	-	RIKEN cDNA 5730488B01 gene	ncRNA	0.266	12.016	5.781	0.560	0.163	0.087	0.233	0.222	0.475	0.647	0.283	0.167	0.138	0.212	0.364	0.487	0.350	nan	0.523	0.703	0.505	nan	0.288	0.424	0.568
12076	chr6	17442659	17461266	+	0	NA	Intergenic	Intergenic	-11995	NM_008591	17295	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	2.993	nan	0.344	1.934	1.629	0.789	2.905	5.012	nan	2.411	4.277	1.781	4.514	3.552	4.519	nan	4.291	3.909	0.572	0.484	0.382	0.500	0.505	0.380	2.721
11637	chr5	118750547	118753682	+	0	NA	intron (NM_001347445, intron 25 of 30)	intron (NM_001347445, intron 25 of 30)	191395	NM_172424	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	2.678	0.586	0.401	0.688	0.491	0.157	3.007	1.089	2.741	2.531	1.449	0.536	1.568	0.913	1.999	3.401	2.507	2.077	nan	nan	0.395	0.824	nan	0.563	1.817
4006	chr13	39049078	39053662	+	0	NA	Intergenic	L1Md_A|LINE|L1	-90495	NM_001170431	108652	Mm.255506	NM_134060	ENSMUSG00000021432	Slc35b3	4921526O06Rik|AI428480|CGI-19|PABST2|PAPST2	solute carrier family 35, member B3	protein-coding	7.577	nan	2.583	5.179	3.616	2.295	5.080	5.415	nan	5.155	4.042	3.315	4.451	5.713	5.820	6.630	3.739	5.814	3.807	3.878	2.129	4.072	2.876	2.559	6.819
3766	chr12	113957370	113962215	+	0	NA	Intergenic	L1_Mus2|LINE|L1	415884	NM_174885	238406	Mm.188683	NM_174885	ENSMUSG00000043945	Adam6a	Adam6|tMDCIV	a disintegrin and metallopeptidase domain 6A	protein-coding	11.944	3.631	1.308	8.065	5.931	3.650	11.581	10.272	5.500	10.977	7.607	4.395	11.698	13.879	10.599	13.202	10.399	8.802	3.516	1.800	2.232	4.265	2.893	3.353	21.492
14742	chr8	125543105	125548650	+	0	NA	Intergenic	Intergenic	-38761	NR_015535	75930	Mm.195663	NR_015535	ENSMUSG00000110629	4930567H12Rik	4930579P07Rik	RIKEN cDNA 4930567H12 gene	ncRNA	5.436	nan	1.608	nan	7.486	5.216	4.297	7.116	3.995	3.305	4.708	4.369	4.899	6.850	nan	5.446	5.599	4.928	nan	2.271	2.385	nan	1.989	nan	nan
9105	chr2	179990858	179992338	+	0	NA	Intergenic	Lx7|LINE|L1	14745	NR_033782	66730	Mm.31773	NR_033782	ENSMUSG00000085704	4921531C22Rik	-	RIKEN cDNA 4921531C22 gene	ncRNA	8.904	11.267	5.073	8.760	6.177	6.287	9.859	11.844	5.102	8.586	5.705	3.628	8.608	9.129	9.087	10.532	9.726	nan	6.001	3.308	6.268	6.191	5.212	7.510	14.733
74	chr1	33789769	33791979	+	0	NA	intron (NM_133817, intron 3 of 14)	intron (NM_133817, intron 3 of 14)	23721	NM_133817	98403	Mm.289103	NM_133817	ENSMUSG00000042197	Zfp451	4930515K21Rik|4933435G09Rik|AI596398|COASTER|Kiaa0576-hp|Znf451|mKIAA1702	zinc finger protein 451	protein-coding	5.122	0.828	0.610	2.227	3.393	1.827	4.530	3.701	2.526	2.024	0.765	0.557	6.075	5.202	4.286	6.208	3.288	4.108	0.975	0.749	0.308	1.006	1.265	0.600	3.894
11161	chr5	35002289	35003898	+	0	NA	intron (NM_173402, intron 4 of 16)	intron (NM_173402, intron 4 of 16)	4015	NM_001163512	71729	Mm.196208	NM_173402	ENSMUSG00000029101	Rgs12	1200016K18Rik|4632412M04Rik|AI481290|E130309H11	regulator of G-protein signaling 12	protein-coding	5.232	11.472	2.909	11.051	2.251	0.919	2.877	4.242	4.004	7.523	3.167	2.122	3.987	4.560	6.909	8.213	3.133	7.204	2.986	0.680	0.834	4.686	1.385	2.161	10.618
5676	chr15	100443513	100447256	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	22191	NR_040351	432982	Mm.234608	NM_001034883	ENSMUSG00000087444	Gm5475	EG432982	predicted gene 5475	ncRNA	6.266	9.667	2.611	8.103	3.008	2.159	7.564	11.085	3.869	7.204	5.123	2.199	7.991	8.384	7.921	nan	6.962	5.529	3.866	1.412	2.141	5.091	2.562	2.809	11.517
15616	chr9	121973143	121979720	+	0	NA	exon (NM_001199927, exon 3 of 5)	exon (NM_001199927, exon 3 of 5)	19595	NM_001289559	215494	Mm.402151	NM_153540	ENSMUSG00000066235	Pomgnt2	Ago61|C85492|Gtdc2	protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2	protein-coding	3.931	1.092	0.550	3.928	3.343	1.942	1.839	2.187	2.849	3.912	1.048	0.710	2.085	3.989	3.059	3.668	1.646	3.984	3.316	1.805	1.477	3.472	nan	2.515	3.978
299	chr1	74149124	74150405	+	0	NA	Intergenic	Intergenic	-4230	NM_009909	12765	Mm.234466	NM_009909	ENSMUSG00000026180	Cxcr2	CD128|CDw128|Cmkar2|Gpcr16|IL-8Rh|IL-8rb|IL8RA|Il8rb|mIL-8RH	chemokine (C-X-C motif) receptor 2	protein-coding	2.810	0.561	0.396	0.654	0.586	0.098	2.271	4.062	0.725	0.868	0.573	0.234	1.435	2.804	1.574	4.315	1.986	1.373	nan	nan	0.262	0.458	nan	0.382	2.899
2024	chr11	21268406	21271762	+	0	NA	intron (NM_139061, intron 4 of 22)	intron (NM_139061, intron 4 of 22)	31052	NM_001290628	245944	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	6.344	nan	2.532	6.721	4.173	2.569	5.516	6.763	4.596	7.421	4.750	2.739	5.797	6.832	6.792	7.918	6.375	5.575	3.442	1.583	2.222	4.180	2.087	2.609	7.415
14669	chr8	122232622	122236263	+	0	NA	Intergenic	Intergenic	-47699	NM_009569	22761	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	5.417	0.712	0.424	3.895	5.086	2.482	4.509	10.184	3.735	4.741	7.570	4.965	3.637	6.569	4.185	5.370	3.787	3.779	1.767	1.751	1.489	3.048	1.175	1.177	5.275
8557	chr2	118410275	118413599	+	0	NA	intron (NM_001177806, intron 4 of 37)	intron (NM_001177806, intron 4 of 37)	22825	NM_001177806	27103	Mm.217616	NM_013719	ENSMUSG00000005102	Eif2ak4	2610011M03|GCN2|MGCN2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding	4.528	0.863	0.514	2.534	1.277	0.459	4.047	4.622	2.273	2.972	0.743	0.518	nan	4.663	4.907	6.120	5.627	5.257	1.813	1.461	1.322	1.778	1.019	0.662	8.388
5952	chr16	25860422	25862269	+	0	NA	intron (NM_001127259, intron 4 of 13)	intron (NM_001127259, intron 4 of 13)	59429	NM_001127264	22061	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	4.361	0.857	0.626	2.047	2.063	1.147	4.927	4.342	3.079	2.763	6.200	2.190	5.395	5.499	3.738	6.830	4.728	4.388	0.845	0.484	0.466	0.751	nan	0.443	4.319
12178	chr6	38865577	38871945	+	0	NA	intron (NM_001294144, intron 1 of 14)	Tigger10|DNA|TcMar-Tigger	7429	NM_010433	15258	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	5.178	1.023	0.474	1.660	1.223	0.571	10.312	2.364	2.172	1.965	0.771	0.393	10.620	6.389	7.062	9.286	5.842	5.965	nan	0.755	0.425	nan	nan	0.224	nan
15016	chr9	44285258	44288299	+	0	NA	intron (NM_138955, intron 2 of 14)	intron (NM_138955, intron 2 of 14)	1466	NM_138955	192663	Mm.101876	NM_138955	ENSMUSG00000032131	Abcg4	6430517O04Rik	ATP-binding cassette, sub-family G (WHITE), member 4	protein-coding	8.636	8.110	2.029	8.280	2.153	1.516	6.938	8.149	4.638	10.655	6.538	3.344	8.060	10.728	9.860	9.658	3.412	8.813	5.035	1.417	1.569	nan	2.882	2.343	17.733
14318	chr8	73320455	73322039	+	0	NA	intron (NM_010687, intron 1 of 14)	intron (NM_010687, intron 1 of 14)	32293	NM_001317391	16795	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	3.644	3.969	2.530	3.695	3.979	1.528	2.617	7.008	nan	4.798	1.739	1.565	3.096	5.030	3.798	nan	4.025	3.726	1.920	1.952	1.737	3.963	2.513	2.444	7.014
7643	chr19	23128846	23137960	+	0	NA	Intergenic	Intergenic	-7823	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	nan	1.851	1.007	nan	6.769	4.002	4.930	7.557	4.592	6.344	nan	1.307	4.881	9.320	4.804	5.696	7.519	5.828	nan	1.447	0.867	1.500	nan	0.822	6.734
13914	chr7	150291440	150298787	+	0	NA	Intergenic	Intergenic	4980278	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	nan	nan	0.312	5.098	1.658	0.704	3.875	8.025	nan	4.721	3.356	2.715	2.631	3.865	4.724	5.116	3.376	6.043	2.960	1.071	0.816	3.238	nan	1.256	6.571
8819	chr2	152604973	152621903	+	0	NA	TTS (NM_001037247)	TTS (NM_001037247)	9111	NM_001037247	266620	Mm.330669	NM_001037247	ENSMUSG00000044863	Defb36	BD-36|Defb123|mBD-36	defensin beta 36	protein-coding	13.172	5.038	2.242	10.040	9.512	5.799	9.950	11.956	8.493	10.186	5.813	2.936	9.820	13.810	9.076	12.264	8.852	13.428	nan	2.233	1.890	2.733	1.805	1.266	14.342
6580	chr17	35096364	35103935	+	0	NA	intron (NM_178592, intron 9 of 19)	intron (NM_178592, intron 9 of 19)	-8151	NM_148947	114652	Mm.222643	NM_148947	ENSMUSG00000034482	Ly6g5c	G5c|NG33	lymphocyte antigen 6 complex, locus G5C	protein-coding	6.720	2.004	1.213	2.620	3.883	2.950	7.442	4.921	2.293	2.158	8.251	3.818	5.419	7.963	3.577	3.392	4.281	3.714	0.897	1.324	0.950	0.835	0.910	0.982	5.605
1350	chr10	61874533	61879017	+	0	NA	intron (NM_001304757, intron 16 of 37)	intron (NM_001304757, intron 16 of 37)	-92911	NM_207000	404634	Mm.272870	NM_207000	ENSMUSG00000020086	H2afy2	macroH2A2	H2A histone family, member Y2	protein-coding	7.651	0.523	0.293	3.488	4.894	2.656	4.408	6.080	4.744	7.314	1.537	2.654	4.750	7.559	4.968	6.251	4.837	5.555	nan	0.763	0.942	0.662	0.714	0.679	7.830
7333	chr18	65478119	65482799	+	0	NA	intron (NR_105742, intron 3 of 6)	intron (NR_105742, intron 3 of 6)	49462	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	1.114	9.774	3.895	1.202	0.523	0.262	0.446	0.499	0.965	0.816	0.691	0.322	0.573	0.539	0.723	0.883	0.461	1.439	0.416	0.541	0.347	0.619	0.372	0.204	0.995
12273	chr6	57761472	57763981	+	0	NA	intron (NM_146168, intron 3 of 4)	intron (NM_146168, intron 3 of 4)	60271	NM_133737	71835	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	4.398	0.925	0.333	1.026	1.640	1.254	5.582	6.697	3.006	2.572	5.743	4.583	1.377	3.199	3.488	4.395	3.878	2.863	nan	0.898	0.406	0.706	1.198	0.850	0.893
10589	chr4	130454240	130478433	+	0	NA	Intergenic	Intergenic	106204	NM_025645	66585	Mm.423019	NM_025645	ENSMUSG00000074088	Snrnp40	0610009C03Rik|Prp8bp|Wdr57	small nuclear ribonucleoprotein 40 (U5)	protein-coding	2.265	15.241	6.613	2.392	1.336	0.713	0.790	0.667	1.132	1.413	1.454	1.069	0.595	1.123	nan	1.418	0.778	1.389	1.218	1.363	1.324	1.505	0.749	0.822	2.003
13783	chr7	135452922	135454351	+	0	NA	Intergenic	ID_B1|SINE|B4	43269	NM_183193	270004	Mm.132547	NM_183193	ENSMUSG00000048377	Foxi2	B130055A05Rik	forkhead box I2	protein-coding	2.317	nan	0.092	2.531	2.071	0.990	2.282	1.739	2.416	2.180	1.554	0.860	2.288	3.132	3.337	3.565	2.708	2.880	0.828	0.788	0.360	0.900	0.210	0.203	2.876
7739	chr19	36996710	36998731	+	0	NA	intron (NM_001080706, intron 30 of 37)	intron (NM_001080706, intron 30 of 37)	71641	NM_001080706	107182	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	5.285	1.147	0.706	3.602	4.307	3.468	3.231	2.148	5.378	5.841	1.868	1.054	4.841	6.266	5.544	6.165	6.006	7.208	0.428	1.029	1.305	0.720	0.674	0.960	8.522
1240	chr10	41402139	41403814	+	0	NA	Intergenic	Intergenic	-47382	NM_001277229	268294	Mm.258475	NM_153398	ENSMUSG00000019826	Zbtb24	BC055367|Bif1|Bsg1|ZNF450	zinc finger and BTB domain containing 24	protein-coding	5.991	0.849	1.045	2.190	1.088	0.852	0.783	4.117	1.586	2.593	1.348	2.193	3.929	5.348	1.772	1.708	3.483	1.970	3.387	1.918	3.068	3.750	2.676	3.133	2.121
10749	chr4	137442591	137447875	+	0	NA	Intergenic	Intergenic	-8063	NM_027063	69380	Mm.272519	NM_027063	ENSMUSG00000041399	1700013G24Rik	AI507018	RIKEN cDNA 1700013G24 gene	protein-coding	nan	0.903	0.543	4.437	4.463	2.680	4.371	3.152	nan	2.536	1.320	0.801	2.918	4.892	3.424	3.684	1.555	nan	3.580	1.758	1.744	3.159	4.144	3.435	5.125
2815	chr11	101691802	101694374	+	0	NA	Intergenic	Intergenic	27547	NM_025404	80981	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	2.067	nan	0.525	0.884	1.270	0.868	1.449	0.899	1.326	1.259	0.589	0.536	0.696	1.017	1.013	1.433	nan	1.329	4.037	5.228	4.262	5.869	5.654	3.690	1.366
8276	chr2	59920728	59928208	+	0	NA	intron (NM_001001182, intron 21 of 35)	intron (NM_001001182, intron 21 of 35)	-41862	NM_028118	72137	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	7.745	2.078	1.081	5.382	4.063	2.355	2.504	4.777	4.141	5.438	2.671	1.527	5.491	7.088	4.191	5.575	5.781	6.464	0.863	1.237	1.007	1.081	1.150	0.638	5.612
10155	chr4	62282271	62285043	+	0	NA	Intergenic	Intergenic	-2772	NM_025286	20530	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	4.416	3.520	1.305	6.084	2.020	0.936	2.571	2.012	3.191	3.492	1.509	1.442	1.970	2.251	2.917	3.678	2.131	4.322	nan	1.145	0.676	2.008	0.580	0.626	4.777
3355	chr12	57525842	57532732	+	0	NA	Intergenic	Intergenic	16834	NM_008259	15375	Mm.4578	NM_008259	ENSMUSG00000035451	Foxa1	Hnf-3a|Hnf3a|Tcf-3a|Tcf3a	forkhead box A1	protein-coding	5.461	nan	0.533	4.372	4.610	2.331	6.033	2.361	6.277	7.551	1.981	1.437	8.173	9.653	nan	8.113	7.205	9.798	1.020	1.270	0.763	0.710	0.855	0.480	5.807
1976	chr11	11643303	11656977	+	0	NA	Intergenic	RMER17B|LTR|ERVK	-22302	NM_001305143	102631730	Mm.159430	NM_001305143	ENSMUSG00000062511	4930512M02Rik	-	RIKEN cDNA 4930512M02 gene	protein-coding	nan	9.679	3.929	0.636	0.209	0.117	0.264	0.217	0.402	0.311	0.182	0.206	0.141	0.247	0.335	0.573	0.394	0.569	0.684	nan	0.196	0.568	0.301	0.249	0.439
7568	chr19	10357871	10373590	+	0	NA	Intergenic	Intergenic	-23360	NM_018801	54525	Mm.182654	NM_018801	ENSMUSG00000024743	Syt7	AI851541|B230112P13Rik	synaptotagmin VII	protein-coding	4.551	1.946	0.552	4.745	2.079	0.971	2.845	6.579	nan	4.988	2.188	2.056	3.415	5.362	5.036	7.176	3.789	7.290	2.614	1.982	1.604	6.159	2.895	2.024	7.521
817	chr1	164477668	164479350	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-20154	NM_009721	11931	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	6.216	5.444	2.047	6.026	2.655	0.950	3.990	3.968	nan	4.242	3.142	2.087	6.405	5.262	6.706	10.183	4.838	5.316	3.982	1.828	0.932	4.261	nan	1.967	6.573
10913	chr4	149799350	149802091	+	0	NA	Intergenic	Intergenic	-26453	NM_027460	70556	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	3.380	1.939	0.745	2.986	1.711	0.725	2.570	2.248	2.721	3.901	0.693	0.612	2.709	4.582	3.923	4.586	2.094	4.289	4.015	1.067	0.581	4.484	2.770	1.551	4.431
2751	chr11	98731112	98739242	+	0	NA	Intergenic	Intergenic	-5742	NM_011869	23989	Mm.246493	NM_011869	ENSMUSG00000017210	Med24	911GSE|AU040102|AW547152|D11Ertd307e|DRIP100|Gse2|Pparb2|Pparbp2|R75526|Thrap4|Trap100	mediator complex subunit 24	protein-coding	3.827	nan	0.775	3.345	5.644	4.332	4.833	5.061	3.654	3.914	2.243	2.537	5.757	7.653	4.140	6.264	nan	3.922	0.731	nan	1.024	0.947	nan	nan	3.853
3470	chr12	78237846	78246530	+	0	NA	intron (NM_145965, intron 1 of 22)	Lx3C|LINE|L1	15533	NM_145965	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	3.307	10.824	5.482	2.953	2.686	1.715	2.430	2.006	2.265	3.256	1.582	2.097	3.679	nan	2.420	nan	2.601	2.479	1.145	1.290	0.898	0.985	1.379	1.460	3.463
12790	chr6	134964480	134981248	+	0	NA	Intergenic	PB1D10|SINE|Alu	-9137	NM_001109914	381823	Mm.296104	NM_001109914	ENSMUSG00000090698	Apold1	Gm1075	apolipoprotein L domain containing 1	protein-coding	5.166	0.689	0.374	3.369	4.006	2.246	7.532	6.622	4.669	5.017	2.011	2.729	7.758	9.931	nan	7.900	6.549	7.628	nan	0.611	0.621	0.779	0.879	0.775	nan
10756	chr4	137538588	137540883	+	0	NA	intron (NM_008305, intron 47 of 96)	intron (NM_008305, intron 47 of 96)	1449	NR_105985	102465616		NR_105985	ENSMUSG00000099134	Mir7018	Gm27606|mmu-mir-7018	microRNA 7018	ncRNA	1.611	0.472	0.516	1.504	5.890	5.367	0.773	2.211	nan	1.853	0.803	0.405	1.267	4.656	1.306	1.443	1.065	nan	1.206	1.502	1.602	1.511	nan	1.625	1.201
12090	chr6	28210867	28212681	+	0	NA	Intergenic	Intergenic	49827	NM_001081678	627049	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	5.679	13.721	1.984	8.921	1.790	1.446	6.448	5.539	3.169	13.382	4.872	2.608	5.085	5.807	9.422	10.045	4.419	8.940	4.118	1.065	2.769	5.109	2.393	5.300	14.491
10323	chr4	102239840	102253179	+	0	NA	Intergenic	Intergenic	-8233	NM_001177983	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	9.012	8.193	3.642	7.176	2.506	1.013	2.252	4.432	6.503	8.401	6.379	3.811	3.303	4.586	5.729	4.439	3.396	6.883	1.104	3.830	2.466	nan	0.594	0.366	7.424
11759	chr5	130671869	130685592	+	0	NA	intron (NM_021371, intron 4 of 5)	(TG)n|Simple_repeat|Simple_repeat	229938	NM_021371	140904	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	5.064	2.073	1.582	3.554	4.506	3.078	5.750	5.775	3.920	4.543	2.350	1.994	5.827	8.030	nan	5.246	nan	nan	nan	1.009	0.953	0.608	nan	1.038	4.078
10234	chr4	86311058	86322739	+	0	NA	intron (NM_029967, intron 14 of 27)	RLTR53_Mm|LTR|ERVK	241405	NM_001081096	75811	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	6.179	nan	1.312	5.600	7.040	5.309	3.660	nan	nan	5.815	3.276	2.369	4.497	5.065	6.093	6.126	3.458	nan	1.274	nan	1.187	3.533	1.459	1.232	nan
13862	chr7	146431721	146449309	+	0	NA	Intergenic	Intergenic	1125680	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	nan	nan	0.454	nan	2.477	1.297	7.383	8.725	nan	5.619	4.868	3.290	7.475	7.475	8.057	8.104	4.096	8.508	2.362	1.008	1.004	3.478	nan	0.984	11.839
7518	chr19	7135370	7143534	+	0	NA	intron (NM_134147, intron 3 of 10)	intron (NM_134147, intron 3 of 10)	-33723	NM_201411	396184	Mm.386930	NM_201411	ENSMUSG00000047787	Flrt1	AW742165|D630040I23Rik	fibronectin leucine rich transmembrane protein 1	protein-coding	0.753	1.384	0.678	0.768	0.469	0.301	0.933	1.066	nan	0.798	0.476	0.339	0.467	0.587	0.907	nan	0.732	0.919	1.439	1.864	1.926	5.165	1.994	1.460	1.244
15180	chr9	63552035	63555226	+	0	NA	intron (NM_001311098, intron 5 of 21)	MLT1A0|LTR|ERVL-MaLR	48863	NM_030068	78250	Mm.444612	NM_030068	ENSMUSG00000037801	Iqch	4921504K03Rik	IQ motif containing H	protein-coding	4.979	6.958	2.652	5.309	4.236	2.574	5.130	5.358	4.747	5.303	2.631	3.539	4.976	6.330	6.426	6.261	3.114	6.424	nan	1.380	1.202	3.781	1.036	0.862	8.961
13656	chr7	121434662	121437257	+	0	NA	intron (NM_001081327, intron 1 of 1)	intron (NM_001081327, intron 1 of 1)	43663	NM_001081327	195646	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	10.043	5.929	3.288	6.513	3.672	2.179	5.518	10.712	5.595	9.454	3.279	2.420	8.106	11.052	7.476	6.762	8.396	6.047	3.520	3.871	1.858	4.335	2.027	1.360	7.076
10506	chr4	124527303	124529069	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-40993	NR_045819	108809	Mm.250313	NR_045819		4933407E24Rik	-	RIKEN cDNA 4933407E24 gene	ncRNA	5.640	11.998	1.970	10.338	3.314	2.673	5.461	5.186	3.659	13.970	5.057	3.113	4.767	6.576	7.134	9.820	3.526	6.921	6.709	1.407	4.440	8.585	2.806	5.868	16.708
8779	chr2	148099481	148100827	+	0	NA	Intergenic	Intergenic	-53185	NM_010446	15376	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	2.339	0.675	0.094	1.962	0.936	0.453	1.008	4.386	2.087	2.393	0.478	0.526	3.015	2.898	2.536	3.275	1.726	4.428	nan	0.413	0.206	1.571	0.143	0.149	1.165
11601	chr5	115460288	115463085	+	0	NA	Intergenic	Intergenic	-4580	NM_011107	18778	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	6.967	11.190	3.363	8.933	4.211	3.822	7.909	6.845	4.638	15.040	7.297	3.507	5.899	8.323	7.647	8.044	5.415	7.633	nan	nan	5.328	5.654	nan	6.720	12.055
10668	chr4	133951716	133956280	+	0	NA	Intergenic	RLTR13F|LTR|ERVK	13993	NM_016957	15331	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	nan	1.405	0.819	4.239	3.739	2.100	5.862	5.287	nan	4.450	3.215	2.040	5.486	7.586	5.209	5.719	4.574	nan	2.495	2.058	1.624	3.098	nan	2.136	5.616
8534	chr2	116797066	116812601	+	0	NA	Intergenic	MTEb|LTR|ERVL-MaLR	-73858	NM_026104	67356	Mm.131623	NM_026104	ENSMUSG00000027355	Tmco5	1700095F04Rik|Tmco5a	transmembrane and coiled-coil domains 5	protein-coding	9.037	1.997	1.017	4.754	3.500	1.692	10.748	10.166	5.762	8.168	3.474	1.631	9.352	11.160	9.368	nan	10.130	8.313	0.747	1.158	0.836	1.403	0.593	0.501	11.688
4719	chr14	58444351	58446265	+	0	NA	Intergenic	(TATG)n|Simple_repeat|Simple_repeat	372622	NM_013518	14180	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	6.331	14.862	5.388	9.306	2.980	2.400	6.710	7.855	4.079	8.034	6.723	3.562	5.540	6.233	8.470	9.845	4.212	8.637	5.130	2.224	3.354	6.521	3.971	4.964	13.509
673	chr1	137120667	137126421	+	0	NA	Intergenic	RMER13B|LTR|ERVK	-163096	NM_030676	26424	Mm.16794	NM_030676	ENSMUSG00000026398	Nr5a2	AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B	nuclear receptor subfamily 5, group A, member 2	protein-coding	6.794	0.742	0.555	nan	2.980	1.484	6.065	6.509	4.843	5.867	3.683	3.612	8.018	5.609	5.330	nan	5.895	7.210	6.602	2.718	1.918	6.938	4.372	2.958	nan
3322	chr12	52988248	52990296	+	0	NA	intron (NM_198111, intron 7 of 13)	intron (NM_198111, intron 7 of 13)	-259405	NM_013780	27386	Mm.247044	NM_013780	ENSMUSG00000021010	Npas3	4930423H22Rik|bHLHe12	neuronal PAS domain protein 3	protein-coding	5.332	9.810	3.187	4.560	3.111	1.198	4.520	7.288	3.620	4.057	4.719	1.987	5.319	7.118	7.529	7.253	4.375	5.371	0.887	0.376	0.415	1.038	0.210	0.110	7.977
15539	chr9	114760641	114764752	+	0	NA	intron (NM_133978, intron 2 of 4)	L1M4|LINE|L1	19297	NM_133978	102545	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	3.213	0.520	0.581	1.880	1.359	1.036	4.467	3.699	2.441	2.468	1.535	0.836	4.504	4.088	4.586	5.966	3.605	4.501	2.533	0.748	1.022	2.181	nan	1.350	7.184
13685	chr7	125661767	125664079	+	0	NA	intron (NM_207239, intron 21 of 36)	intron (NM_207239, intron 21 of 36)	44765	NM_207239	233863	Mm.294173	NM_207239	ENSMUSG00000032777	Gtf3c1	-	general transcription factor III C 1	protein-coding	3.139	0.627	0.281	2.508	1.936	1.055	3.796	6.620	2.144	3.656	1.412	1.490	6.029	5.620	3.952	4.010	3.946	3.937	1.236	1.391	0.746	1.506	2.287	1.586	2.508
4204	chr13	60814922	60819792	+	0	NA	Intergenic	Lx5|LINE|L1	-14513	NM_027344	70202	Mm.158337	NM_027344	ENSMUSG00000056728	Ctsll3	2310051M13Rik	cathepsin L-like 3	protein-coding	3.507	0.567	0.241	3.592	2.418	1.037	4.418	3.986	4.783	4.964	1.118	0.910	5.218	7.063	6.435	8.419	3.359	6.796	0.705	0.880	0.537	0.769	0.798	0.607	7.736
11037	chr5	17429127	17431198	+	0	NA	Intergenic	Intergenic	-45960	NM_027609	70935	Mm.332225	NM_027609	ENSMUSG00000058643	Speer4f1	4922502J04Rik|SPEER-4F|Speer4f	spermatogenesis associated glutamate (E)-rich protein 4F1	protein-coding	4.028	1.078	0.360	4.748	2.312	1.668	2.040	2.880	3.020	3.240	0.928	1.055	1.369	2.235	2.318	2.387	2.269	4.189	0.927	1.286	0.710	0.702	0.720	0.877	1.929
12886	chr6	148936987	148944167	+	0	NA	intron (NM_019643, intron 1 of 5)	B2_Mm2|SINE|B2	-4280	NR_144294	109163	Mm.440359	NM_175404		3010003L21Rik	-	RIKEN cDNA 3010003L21 gene	ncRNA	4.692	0.688	0.520	nan	0.945	0.950	7.728	7.878	1.885	nan	0.639	1.035	11.008	7.238	7.060	nan	9.968	3.250	0.834	nan	0.770	nan	0.688	0.767	nan
14303	chr8	73080182	73099910	+	0	NA	intron (NM_001317391, intron 6 of 15)	intron (NM_001317391, intron 6 of 15)	73534	NR_039551	100628574		NR_039551	ENSMUSG00000093140	Mir28b	mmu-mir-28b	microRNA 28b	ncRNA	5.813	nan	0.973	5.133	2.882	2.306	nan	nan	4.903	5.358	1.951	1.299	5.115	5.486	4.571	5.475	4.116	5.605	3.782	2.177	2.171	6.792	2.125	1.808	9.063
9965	chr4	21774419	21775843	+	0	NA	Intergenic	Intergenic	-1139	NM_001290425	77593	Mm.154306	NM_152825	ENSMUSG00000040455	Usp45	3110003C05Rik|4930550B20Rik|AI843191|Gcap7	ubiquitin specific petidase 45	protein-coding	9.161	15.271	3.272	11.934	3.643	1.235	7.133	7.787	6.292	9.935	7.320	3.222	8.313	9.501	10.988	11.824	4.116	9.761	6.545	1.634	1.391	8.506	2.447	1.955	14.749
1947	chr11	6315066	6317488	+	0	NA	intron (NM_001252287, intron 3 of 22)	intron (NM_001252287, intron 3 of 22)	23719	NM_001252288	18293	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	9.226	16.314	6.315	10.986	5.930	5.189	8.218	8.386	6.616	11.516	8.104	7.181	7.939	9.385	9.751	11.439	7.455	8.791	6.335	nan	6.470	8.112	4.482	6.337	12.292
2366	chr11	69221802	69225709	+	0	NA	intron (NM_008192, intron 16 of 18)	intron (NM_008192, intron 16 of 18)	13267	NM_008192	14919	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	15.098	16.135	4.733	15.345	10.625	4.750	12.810	12.491	6.904	13.829	11.550	5.252	8.985	16.095	12.559	14.614	11.398	10.559	7.880	6.864	4.763	8.446	6.680	4.614	18.642
1347	chr10	61682828	61687640	+	0	NA	intron (NM_009120, intron 3 of 6)	intron (NM_009120, intron 3 of 6)	4913	NM_009120	20224	Mm.391794	NM_009120	ENSMUSG00000020088	Sar1a	1600019H17Rik|Sara|Sara1	secretion associated Ras related GTPase 1A	protein-coding	6.370	0.556	0.543	3.373	3.671	2.335	4.060	5.531	4.157	4.848	2.084	3.739	3.048	4.861	4.513	5.985	5.510	6.256	4.883	2.726	2.468	3.206	5.007	4.258	6.132
11228	chr5	53224487	53226360	+	0	NA	Intergenic	Intergenic	-11971	NM_172710	231238	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	7.365	7.208	1.676	7.159	2.877	0.755	6.455	5.492	5.082	7.817	5.155	3.146	5.937	8.174	7.641	8.206	3.664	8.443	4.529	1.672	0.788	5.700	1.854	1.561	9.782
8812	chr2	152220917	152225640	+	0	NA	Intergenic	B4|SINE|B4	-3562	NM_007788	12995	Mm.23692	NM_007788	ENSMUSG00000074698	Csnk2a1	Csnk2a1-rs4	casein kinase 2, alpha 1 polypeptide	protein-coding	6.865	4.696	1.388	4.565	1.532	1.106	7.762	7.883	2.310	7.882	1.681	1.453	7.188	6.862	7.284	11.974	8.645	6.060	nan	1.781	2.391	5.284	3.540	4.648	16.619
25	chr1	13362156	13364615	+	0	NA	intron (NM_008678, intron 1 of 22)	intron (NM_008678, intron 1 of 22)	9044	NM_001302702	17978	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	11.925	19.645	4.816	13.735	5.143	4.741	9.938	8.078	5.991	21.668	7.749	4.356	8.218	10.079	10.544	16.680	8.648	11.322	6.031	2.281	4.502	7.477	3.208	7.198	21.501
1504	chr10	80220891	80222126	+	0	NA	intron (NR_038088, intron 1 of 4)	PB1D10|SINE|Alu	-5090	NM_023431	68114	Mm.273418	NM_023431	ENSMUSG00000020156	Mum1	2610019J09|9430059D04Rik|UBE-1C2	melanoma associated antigen (mutated) 1	protein-coding	2.388	2.536	0.582	3.162	2.408	1.034	1.109	2.295	1.654	1.585	0.903	0.999	2.193	3.089	3.552	2.023	1.312	3.117	nan	0.945	0.637	3.261	0.665	0.382	2.562
3350	chr12	57414252	57426430	+	0	NA	intron (NM_001164370, intron 9 of 9)	intron (NM_001164370, intron 9 of 9)	125780	NM_008259	15375	Mm.4578	NM_008259	ENSMUSG00000035451	Foxa1	Hnf-3a|Hnf3a|Tcf-3a|Tcf3a	forkhead box A1	protein-coding	2.215	nan	0.505	1.011	1.696	0.773	1.749	1.840	1.858	1.857	1.262	0.770	1.672	2.480	nan	nan	2.170	nan	6.551	2.289	1.481	4.727	1.061	0.760	2.643
3971	chr13	36715721	36716553	+	0	NA	Intergenic	Intergenic	18340	NM_153529	68404	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	3.027	nan	1.271	0.724	2.282	1.278	nan	1.831	2.603	2.166	1.006	1.095	0.996	3.403	1.636	2.908	2.304	2.257	0.402	0.837	0.589	0.771	0.947	0.765	1.750
12807	chr6	136751447	136763921	+	0	NA	intron (NM_145067, intron 7 of 25)	L1Md_F|LINE|L1	24058	NM_145067	14917	Mm.222729	NM_145067	ENSMUSG00000042638	Gucy2c	AI893437|GC-C|Gcc	guanylate cyclase 2c	protein-coding	5.157	5.452	2.047	5.036	2.950	1.757	6.074	8.951	5.430	7.192	3.358	3.041	9.260	8.011	nan	9.003	7.721	7.071	nan	1.746	1.542	4.036	1.418	1.370	nan
1253	chr10	42175093	42176848	+	0	NA	Intergenic	CT-rich|Low_complexity|Low_complexity	100772	NM_019740	56484	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	2.573	1.053	0.470	4.871	1.593	1.438	0.354	0.774	1.989	1.778	0.573	0.316	0.419	0.965	1.191	2.232	1.137	3.341	0.615	0.593	1.088	0.530	0.715	0.965	2.087
7850	chr19	47520057	47521239	+	0	NA	intron (NM_175360, intron 4 of 9)	intron (NM_175360, intron 4 of 9)	7666	NR_045322	100503104	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	5.360	15.516	7.004	4.431	3.079	1.077	3.985	1.599	3.491	6.203	2.679	1.561	2.036	5.696	3.374	5.496	11.122	4.155	1.078	2.920	0.455	3.216	3.164	1.718	5.001
12099	chr6	29222271	29225132	+	0	NA	Intergenic	RLTR23|LTR|ERV1	-7337	NM_001302934	23917	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine 5'-phosphate dehydrogenase 1	protein-coding	6.192	5.122	1.768	9.458	7.511	5.467	6.200	12.359	4.885	5.546	3.917	4.062	6.602	8.441	8.156	8.782	6.551	6.249	nan	2.509	2.547	4.157	2.513	2.134	6.826
13689	chr7	125756377	125758850	+	0	NA	intron (NM_001081022, intron 3 of 27)	intron (NM_001081022, intron 3 of 27)	49737	NM_001081022	233865	Mm.274389	NM_001081022	ENSMUSG00000032743	D430042O09Rik	Kiaa0556	RIKEN cDNA D430042O09 gene	protein-coding	3.084	0.526	0.586	0.548	0.476	0.482	3.593	4.894	0.870	0.949	1.143	1.863	3.298	1.386	nan	2.278	1.686	1.706	0.821	0.850	0.580	1.547	0.976	0.697	3.950
13693	chr7	125891179	125894900	+	0	NA	intron (NM_001101488, intron 5 of 6)	intron (NM_001101488, intron 5 of 6)	185163	NM_001081022	233865	Mm.274389	NM_001081022	ENSMUSG00000032743	D430042O09Rik	Kiaa0556	RIKEN cDNA D430042O09 gene	protein-coding	0.328	0.648	0.425	0.345	0.385	0.166	0.326	nan	0.386	0.217	0.318	0.351	0.229	0.355	nan	0.571	0.415	0.570	2.726	2.159	1.837	3.131	2.229	1.996	0.512
13887	chr7	148400172	148408900	+	0	NA	Intergenic	Intergenic	3089701	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	4.267	nan	1.105	5.152	2.685	1.294	5.695	11.803	nan	5.068	5.559	2.874	7.514	7.987	7.221	6.717	3.461	5.961	3.313	1.106	1.161	4.360	nan	1.218	nan
5469	chr15	81351827	81356244	+	0	NA	intron (NM_011399, intron 1 of 8)	ID_B1|SINE|B4	6730	NM_011399	20524	Mm.222536	NM_011399	ENSMUSG00000022404	Slc25a17	34kDa|47kDa|PMP34|Pmp47	solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17	protein-coding	12.598	11.680	5.845	nan	7.036	4.517	nan	16.858	6.481	nan	nan	4.151	12.550	15.291	10.868	9.767	10.738	8.915	5.085	3.978	4.115	nan	5.717	4.470	12.796
11856	chr5	138181014	138183170	+	0	NA	intron (NM_009315, intron 9 of 14)	intron (NM_009315, intron 9 of 14)	5094	NM_009315	21343	Mm.248517	NM_009315	ENSMUSG00000036980	Taf6	80kDa|AW549759|TAF(II)80|TAFII70|Taf2e|p80	TATA-box binding protein associated factor 6	protein-coding	1.913	3.129	0.662	3.397	1.632	1.215	2.225	3.524	1.349	3.714	1.675	1.870	1.707	2.922	3.575	2.825	1.524	3.148	5.219	4.306	3.725	6.796	8.545	7.059	3.981
11794	chr5	136013033	136013974	+	0	NA	intron (NM_001256096, intron 4 of 10)	intron (NM_001256096, intron 4 of 10)	18703	NM_001256098	74198	Mm.275574	NM_023742	ENSMUSG00000004947	Dtx2	2610524D08Rik|AA408415|AU022494|Deltex2	deltex 2, E3 ubiquitin ligase	protein-coding	4.929	6.773	8.542	2.373	5.240	2.049	1.641	1.458	1.459	3.321	5.702	6.690	0.767	4.251	0.572	1.326	1.610	1.434	0.944	3.098	2.672	0.459	1.875	1.085	1.994
15506	chr9	108683477	108687172	+	0	NA	TTS (NM_020520)	TTS (NM_020520)	-6819	NM_008924	19087	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	5.141	5.997	2.013	4.804	2.320	1.256	3.521	4.321	nan	5.800	2.847	2.226	4.060	6.079	5.370	6.395	4.063	5.126	6.189	3.900	1.690	5.931	4.901	4.129	8.157
5941	chr16	24932708	24934575	+	0	NA	intron (NM_001145954, intron 5 of 7)	intron (NM_001145954, intron 5 of 7)	-125998	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	6.781	1.702	1.437	3.290	4.411	1.859	2.800	8.472	3.524	4.344	3.212	4.156	3.893	5.768	3.605	nan	3.597	3.611	1.814	1.316	0.819	1.639	nan	0.693	3.471
10445	chr4	118965186	118968188	+	0	NA	intron (NM_133892, intron 4 of 6)	B4|SINE|B4	4720	NM_133892	100470	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	7.077	11.935	2.435	7.833	2.613	1.976	5.848	5.780	4.740	8.071	6.248	4.370	5.938	6.507	8.113	8.307	3.956	7.753	7.223	3.936	3.575	9.731	3.964	4.256	10.178
9877	chr3	151575614	151577589	+	0	NA	Intergenic	MIR|SINE|MIR	138719	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding	5.953	0.599	0.990	2.503	2.821	1.802	2.379	5.315	2.040	2.626	0.605	1.589	3.829	3.999	2.982	2.693	5.337	2.508	0.819	2.098	1.598	1.761	0.584	0.544	4.512
6654	chr17	45869144	45875477	+	0	NA	Intergenic	Intergenic	-138466	NM_028164	72240	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	4.964	2.203	0.735	3.285	3.135	2.067	8.348	9.316	4.088	8.621	4.934	3.145	6.568	9.255	7.768	8.653	nan	4.749	4.094	1.677	1.746	6.705	2.433	2.034	10.784
3932	chr13	32409758	32410968	+	0	NA	Intergenic	RLTR20A4|LTR|ERVK	-71819	NM_146041	218138	Mm.247143	NM_146041	ENSMUSG00000038372	Gmds	BC031788|C87208	GDP-mannose 4, 6-dehydratase	protein-coding	0.657	0.715	0.327	0.518	0.402	0.104	0.291	1.386	1.113	0.886	0.353	1.259	0.308	0.343	0.518	0.701	0.639	0.598	5.508	2.938	3.627	5.155	8.003	6.770	0.426
11760	chr5	130688076	130689489	+	0	NA	intron (NM_021371, intron 4 of 5)	Lx8|LINE|L1	239990	NM_021371	140904	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	3.099	0.835	0.559	2.703	2.850	2.121	2.080	2.781	2.103	1.828	1.273	0.625	4.150	4.919	4.136	4.625	5.468	2.704	nan	0.385	0.227	0.442	nan	0.683	5.307
11546	chr5	109027707	109030123	+	0	NA	Intergenic	L1Md_Gf|LINE|L1	-22479	NM_009491	22307	Mm.261598	NM_009491	ENSMUSG00000067010	Vmn2r10	V2r16|VR16	vomeronasal 2, receptor 10	protein-coding	3.213	0.553	0.595	2.112	0.875	0.847	3.529	3.045	2.540	2.342	0.908	0.319	5.184	5.871	5.119	4.325	3.425	3.463	nan	0.452	0.105	0.407	0.431	0.196	3.444
8024	chr2	25412356	25413946	+	0	NA	Intergenic	RLTR14-int|LTR|ERV1	-10091	NM_001289453	14347	Mm.1203	NM_013524	ENSMUSG00000036587	Fut7	AI853193|FTVII|Fuc-TVII|FucT-VII	fucosyltransferase 7	protein-coding	15.115	15.992	7.081	12.460	11.613	6.427	13.043	15.168	nan	14.216	7.752	7.564	10.308	12.931	11.284	12.905	14.068	11.115	8.020	7.582	7.517	7.403	9.877	11.314	19.302
15154	chr9	60454644	60465466	+	0	NA	intron (NM_001040426, intron 3 of 17)	intron (NM_001040426, intron 3 of 17)	50980	NM_001040426	207596	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	3.531	1.082	0.775	3.581	1.809	1.028	1.954	nan	3.508	4.611	0.616	0.847	4.540	6.111	2.724	3.002	2.376	4.913	1.323	1.223	0.859	1.400	0.633	0.593	2.607
1730	chr10	111206083	111208792	+	0	NA	intron (NM_001003717, intron 2 of 22)	intron (NM_001003717, intron 2 of 22)	42635	NM_175489	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	2.681	1.191	0.949	2.436	2.334	1.044	2.244	2.347	nan	4.144	4.056	5.459	2.774	4.047	3.491	3.492	2.271	3.651	1.691	1.435	0.532	1.839	1.758	1.081	2.692
46	chr1	20852522	20855183	+	0	NA	Intergenic	ORR1C2|LTR|ERVL-MaLR	-33639	NM_008563	17215	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|p1.m	minichromosome maintenance complex component 3	protein-coding	9.147	0.526	0.338	3.732	4.952	3.385	8.198	4.933	5.858	6.735	3.035	4.786	8.493	7.660	5.892	10.866	9.721	7.174	0.653	1.170	0.875	0.612	0.794	0.538	4.749
3623	chr12	99492368	99498532	+	0	NA	Intergenic	Intergenic	-45376	NM_183186	71375	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	9.713	2.199	1.073	5.261	4.272	2.502	3.554	2.790	5.301	10.249	3.837	2.382	8.492	7.082	5.506	7.771	8.186	7.183	2.351	1.103	1.057	2.330	1.308	1.648	11.275
1316	chr10	58785635	58787028	+	0	NA	Intergenic	Lx8|LINE|L1	-27028	NM_172788	237353	Mm.333078	NM_172788	ENSMUSG00000037990	Sh3rf3	4831416G18Rik|Igfbp5-ip|Sh3md4|Sh3rf31	SH3 domain containing ring finger 3	protein-coding	13.401	9.916	4.137	11.510	12.757	9.523	10.787	12.439	7.533	19.708	9.038	6.902	10.383	14.547	13.274	14.490	11.705	10.843	nan	5.185	5.721	6.672	6.535	8.165	19.654
12133	chr6	31511883	31513818	+	0	NA	Intergenic	Intergenic	51087	NM_013723	27205	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1	podocalyxin-like	protein-coding	5.281	0.692	0.507	6.663	2.454	1.422	4.803	6.688	2.958	6.666	1.301	2.141	3.778	4.870	5.157	7.255	3.973	4.812	3.170	2.991	2.800	5.816	5.089	4.233	7.143
2630	chr11	90402668	90404803	+	0	NA	Intergenic	Intergenic	-12818	NM_172563	217082	Mm.158903	NM_172563	ENSMUSG00000003949	Hlf	E230015K02Rik	hepatic leukemia factor	protein-coding	nan	0.718	0.685	nan	0.476	0.087	0.537	0.643	0.462	0.393	0.569	0.861	0.145	0.418	0.499	0.644	0.748	0.911	2.731	4.554	1.515	3.623	2.898	1.204	nan
12223	chr6	50336712	50338452	+	0	NA	intron (NM_001347213, intron 11 of 23)	B4|SINE|B4	45255	NM_027881	71720	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	1.246	3.342	3.639	1.216	0.795	0.919	3.057	3.506	2.780	2.238	5.950	3.191	3.355	4.279	3.212	1.887	1.839	4.001	nan	0.451	1.170	0.691	0.670	1.022	2.958
2373	chr11	69484200	69486578	+	0	NA	intron (NM_001081330, intron 24 of 85)	B2_Mm2|SINE|B2	63719	NM_001081330	327954	Mm.247478	NM_177617	ENSMUSG00000005237	Dnah2	2900022L05Rik|4930564A01|D130094J20|D330014H01Rik|Dnahc2|Dnhd3	dynein, axonemal, heavy chain 2	protein-coding	8.487	13.225	4.221	11.195	5.201	3.109	7.140	8.143	4.787	10.440	7.656	3.888	7.138	9.121	8.473	10.599	6.339	8.096	4.523	2.524	3.961	6.242	nan	3.930	12.779
10023	chr4	43784689	43786307	+	0	NA	Intergenic	(TTTG)n|Simple_repeat|Simple_repeat	-3171	NR_033638	29848	Mm.424497	NR_033638	ENSMUSG00000111338	Olfr29-ps1	MOR262-11|MTPCR52|Olfr158|Olfr29|Olfr37d|mOR37d	olfactory receptor 29, pseudogene 1	pseudo	2.834	nan	0.491	2.548	1.243	0.559	0.866	0.444	1.962	2.344	0.362	0.186	1.857	4.168	2.106	3.311	2.665	1.948	0.960	0.289	0.062	nan	0.402	0.316	4.214
8560	chr2	118499803	118507578	+	0	NA	Intergenic	B2_Mm1t|SINE|B2	-23994	NM_009273	20813	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	2.601	0.999	0.407	5.458	1.401	0.879	0.932	2.049	3.666	8.446	4.821	1.659	nan	7.895	2.514	3.863	5.749	3.155	0.492	0.473	0.400	0.766	0.427	0.300	nan
6259	chr16	95921835	95927847	+	0	NA	intron (NR_040484, intron 1 of 3)	intron (NR_040484, intron 1 of 3)	4236	NR_040484	69776	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	8.542	5.201	1.647	8.251	4.087	3.136	7.921	11.902	5.378	8.867	7.586	4.381	8.712	9.704	8.698	10.357	6.387	10.040	7.583	3.608	2.789	5.911	5.558	5.185	9.668
4163	chr13	55422255	55424141	+	0	NA	intron (NM_021489, intron 2 of 13)	intron (NM_021489, intron 2 of 13)	3606	NM_021489	58992	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	8.513	10.045	2.495	8.851	2.883	1.707	5.330	7.657	5.005	10.466	8.514	3.916	5.623	7.971	8.690	9.659	3.102	8.542	4.261	1.511	0.845	6.369	1.582	2.248	15.391
12569	chr6	108607000	108622163	+	0	NA	intron (NR_104577, intron 1 of 6)	intron (NR_104577, intron 1 of 6)	8586	NR_040757	75394	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	9.268	4.762	1.817	6.485	7.002	3.902	12.113	10.388	6.332	10.377	5.890	4.992	10.719	11.700	8.902	11.230	8.626	7.931	6.239	2.939	2.571	5.184	4.195	2.989	nan
6992	chr18	4967015	4972638	+	0	NA	Intergenic	Intergenic	-76763	NM_153153	225115	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	4.304	1.155	0.823	2.427	3.344	1.545	4.220	5.469	2.941	2.640	3.230	2.899	4.736	4.454	4.042	3.846	3.051	4.458	5.630	2.808	1.420	5.550	5.822	3.508	2.765
5659	chr15	99897065	99898242	+	0	NA	Intergenic	B1_Mur3|SINE|Alu	-22197	NM_001113545	65970	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	3.736	1.784	1.120	2.865	3.364	2.237	3.582	5.564	2.634	2.437	1.659	1.323	4.714	4.142	3.715	3.894	4.300	4.578	2.199	1.609	1.946	1.000	2.423	2.735	2.583
3505	chr12	81111296	81113860	+	0	NA	intron (NM_022316, intron 3 of 12)	L1ME4c|LINE|L1	-53573	NR_037227	100526532		NR_037227	ENSMUSG00000092673	Mir3067	mir-3067|mmu-mir-3067	microRNA 3067	ncRNA	5.700	1.723	0.610	2.773	2.201	0.538	2.426	2.124	2.463	3.149	1.560	0.890	3.070	5.106	2.675	4.757	3.810	3.751	0.803	1.033	0.287	0.969	0.649	0.478	3.746
6878	chr17	80113277	80116561	+	0	NA	Intergenic	L1Md_T|LINE|L1	-12552	NM_176963	319625	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	4.218	2.762	1.047	2.891	1.182	0.410	11.203	5.044	nan	4.059	3.248	1.180	3.847	4.859	6.953	8.112	5.690	3.143	1.041	0.415	0.635	2.137	0.558	0.437	11.639
11447	chr5	93281758	93293441	+	0	NA	Intergenic	Intergenic	20026	NM_007635	12452	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	4.600	0.624	0.540	5.233	4.976	2.666	5.001	4.464	4.644	4.147	3.132	2.232	4.984	6.110	5.322	6.508	3.723	6.524	3.241	2.305	1.618	4.799	2.206	1.256	4.255
5813	chr16	13754225	13755205	+	0	NA	Intergenic	CpG	-24231	NM_011987	26565	Mm.4214	NM_011987	ENSMUSG00000022683	Pla2g10	GX sPLA2|PLA2GX|sPLA2-X	phospholipase A2, group X	protein-coding	6.057	6.691	2.501	6.631	3.867	2.584	3.160	5.001	3.952	5.117	2.694	2.025	3.568	4.111	5.615	8.106	3.956	5.982	4.901	2.668	2.586	5.221	4.367	4.312	9.063
1254	chr10	42196409	42199811	+	0	NA	intron (NM_019740, intron 2 of 3)	intron (NM_019740, intron 2 of 3)	78632	NM_019740	56484	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	10.198	6.710	3.022	8.505	3.918	2.455	5.973	6.029	5.465	6.310	5.199	2.980	5.446	6.883	8.487	8.292	5.813	8.453	3.427	2.138	2.156	3.888	2.797	2.617	9.928
6839	chr17	72032071	72034769	+	0	NA	intron (NM_007439, intron 5 of 28)	intron (NM_007439, intron 5 of 28)	251473	NM_030179	78785	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	3.353	2.514	0.917	2.888	3.218	1.463	1.423	2.764	3.538	4.227	6.209	1.834	5.936	6.294	3.991	6.684	4.627	4.738	1.887	1.202	1.079	1.629	1.170	0.706	5.829
1642	chr10	94854830	94864187	+	0	NA	intron (NM_018797, intron 9 of 30)	intron (NM_018797, intron 9 of 30)	85070	NM_018797	54712	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	11.145	1.433	0.968	7.293	9.917	6.080	7.340	2.923	6.886	8.372	nan	4.066	5.042	9.282	6.243	6.485	7.681	9.780	nan	1.791	1.612	nan	1.829	1.297	8.905
3712	chr12	109910883	109915808	+	0	NA	Intergenic	Intergenic	165467	NR_037233	100499517		NR_037233	ENSMUSG00000093351	Mir3072	mir-3072|mmu-mir-3072	microRNA 3072	ncRNA	6.033	1.246	0.697	nan	0.684	0.307	4.942	4.291	nan	nan	0.878	0.501	1.944	6.437	4.904	5.158	3.852	2.419	1.264	1.410	1.080	1.987	1.233	1.244	7.852
12036	chr6	5457687	5462242	+	0	NA	Intergenic	L1_Mur3|LINE|L1	36314	NM_013743	27273	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	3.362	1.616	0.681	8.115	9.624	6.093	3.864	8.616	5.391	6.234	0.812	1.318	8.061	4.955	11.580	6.865	6.005	5.488	0.714	0.779	0.623	2.792	0.402	0.338	nan
4622	chr14	45838328	45840266	+	0	NA	Intergenic	B4A|SINE|B4	-181154	NM_001042719	114874	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	3.763	11.180	4.708	5.581	3.290	2.172	2.380	3.983	2.423	5.863	2.618	0.958	1.702	3.319	4.984	4.897	2.247	3.994	4.838	2.877	3.507	6.326	3.782	4.947	7.139
892	chr1	173773818	173776213	+	0	NA	Intergenic	Intergenic	-8096	NM_008329	15951	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	5.369	3.052	1.091	2.276	1.525	0.881	1.294	1.398	1.760	2.480	2.262	0.430	1.432	nan	1.835	2.164	1.443	1.884	0.780	1.691	0.578	0.658	0.649	0.347	1.535
12122	chr6	31105008	31113515	+	0	NA	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-46168	NR_029532	387223		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	3.225	2.047	0.910	3.647	2.481	1.087	3.262	3.473	3.397	3.315	1.296	1.707	3.232	3.366	4.765	6.187	3.618	nan	nan	3.690	2.200	8.303	3.232	2.499	3.780
11535	chr5	106226746	106231494	+	0	NA	Intergenic	Intergenic	-92220	NR_136913	102635633	Mm.383511	NR_136913	ENSMUSG00000105508	Gm32921	-	predicted gene, 32921	ncRNA	4.570	2.012	0.910	3.551	3.506	1.912	5.462	4.497	2.658	3.637	1.896	1.428	4.280	5.828	4.936	5.059	3.693	4.620	nan	0.973	0.620	0.773	1.457	0.990	3.706
6363	chr17	17721563	17727656	+	0	NA	intron (NM_001104539, intron 3 of 5)	L1VL4|LINE|L1	20668	NM_001104539	626942	Mm.404019	NM_001104539	ENSMUSG00000092120	Vmn2r90	EG626942	vomeronasal 2, receptor 90	protein-coding	nan	8.196	5.976	1.762	1.274	1.012	1.300	nan	1.582	1.861	0.768	0.748	1.328	1.686	1.007	1.126	1.695	1.607	0.886	1.916	1.209	0.410	0.829	0.637	nan
7630	chr19	21672675	21680168	+	0	NA	intron (NM_146096, intron 1 of 3)	L1_Mur3|LINE|L1	23112	NM_146096	226016	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding	5.390	2.032	1.349	3.761	4.970	3.337	4.608	6.804	4.911	5.795	2.102	2.056	4.472	5.218	4.206	5.692	8.039	nan	0.585	0.986	0.887	0.739	0.986	0.724	5.491
546	chr1	127570484	127576867	+	0	NA	intron (NM_028135, intron 2 of 7)	B3|SINE|B2	104346	NM_028135	72160	Mm.281287	NM_028135	ENSMUSG00000026347	Tmem163	2610024A01Rik|SV31	transmembrane protein 163	protein-coding	5.792	nan	0.425	3.078	2.633	1.264	4.682	5.707	3.132	3.409	4.499	2.466	5.786	5.137	4.709	8.358	5.861	nan	nan	0.610	0.397	0.563	1.191	0.675	5.333
11099	chr5	30168313	30169289	+	0	NA	intron (NM_001289799, intron 5 of 15)	B1_Mur1|SINE|Alu	-1938	NR_035486	100316709		NR_035486	ENSMUSG00000088113	Mir1960	mir-1960|mmu-mir-1960	microRNA 1960	ncRNA	2.866	1.592	0.840	nan	2.253	1.630	1.526	1.325	2.503	2.262	4.254	1.249	0.963	2.762	1.152	1.754	1.375	1.715	1.153	0.886	0.627	1.235	0.971	0.472	1.600
8758	chr2	146335396	146340166	+	0	NA	intron (NM_001033348, intron 34 of 40)	intron (NM_001033348, intron 34 of 40)	78495	NR_040619	77806	Mm.392819	NR_040619	ENSMUSG00000085958	A930019D19Rik	-	RIKEN cDNA A930019D19 gene	ncRNA	6.878	2.714	1.209	5.584	3.129	1.957	3.921	8.275	3.907	8.012	1.904	1.353	6.977	6.915	5.044	6.348	6.513	7.049	nan	1.791	1.879	2.605	2.330	2.217	7.132
537	chr1	127325080	127339530	+	0	NA	intron (NM_145128, intron 4 of 17)	MYSERV16_I-int|LTR|ERVK	127319	NM_145128	107895	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	9.000	9.798	5.813	4.580	4.781	2.718	6.540	5.405	5.189	5.488	4.035	2.470	7.310	6.542	6.154	8.521	8.141	6.263	nan	2.298	1.651	1.286	1.791	1.509	5.488
15720	chrX	45609175	45610959	+	0	NA	Intergenic	Lx8|LINE|L1	519163	NM_026841	68800	Mm.336041	NM_026841	ENSMUSG00000037086	Prr32	1110059M19Rik	proline rich 32	protein-coding	4.485	4.342	1.683	3.603	2.107	1.611	2.251	5.031	3.638	4.073	2.648	2.380	2.789	4.756	3.693	5.664	3.114	3.903	3.011	2.054	1.455	2.849	1.128	1.415	4.178
11156	chr5	34511424	34512946	+	0	NA	intron (NM_139064, intron 1 of 5)	intron (NM_139064, intron 1 of 5)	1794	NM_139064	231130	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	7.322	11.358	4.662	6.461	4.632	2.778	5.571	4.891	5.679	5.069	4.048	2.724	4.179	6.784	6.069	6.618	5.227	nan	3.263	2.912	2.548	5.335	2.916	2.378	6.880
7794	chr19	44348758	44353177	+	0	NA	Intergenic	RLTR20C1_MM|LTR|ERVK	17641	NM_183216	329065	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	1.219	0.949	0.590	nan	1.208	0.820	1.431	2.246	2.380	1.711	1.678	0.895	1.711	1.973	1.316	2.469	1.700	2.638	0.849	1.052	0.605	4.954	0.652	0.487	2.268
6636	chr17	44338425	44340872	+	0	NA	Intergenic	RLTR17B_Mm|LTR|ERVK	151076	NM_172621	224796	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg	chloride intracellular channel 5	protein-coding	3.072	0.568	0.637	3.097	3.853	1.852	2.021	1.310	2.291	2.076	0.529	0.723	1.530	4.254	2.928	3.515	nan	4.590	0.389	0.966	0.190	0.502	0.640	0.192	2.559
10761	chr4	137767138	137775105	+	0	NA	intron (NM_007431, intron 1 of 11)	intron (NM_007431, intron 1 of 11)	-4646	NM_001287172	11647	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	5.166	5.242	1.393	7.006	7.184	5.495	4.766	4.088	nan	8.127	4.029	2.190	4.169	7.001	5.662	6.631	3.458	6.095	3.527	1.579	1.908	3.748	nan	2.869	8.476
9002	chr2	165978210	165981093	+	0	NA	Intergenic	Intergenic	-12986	NM_008679	17979	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	4.428	2.274	0.583	3.956	0.740	0.510	1.545	4.719	3.854	5.228	5.160	4.114	1.587	2.873	2.821	3.701	1.280	2.049	nan	0.753	1.541	4.076	1.219	2.550	6.292
11767	chr5	132288480	132291383	+	0	NA	intron (NM_177047, intron 1 of 18)	intron (NM_177047, intron 1 of 18)	252412	NM_177047	319974	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	1.105	0.892	0.396	1.587	0.615	0.629	1.288	3.014	1.809	nan	6.090	3.936	1.309	1.429	nan	0.892	nan	nan	nan	0.459	0.679	0.737	nan	0.598	nan
9801	chr3	129756403	129759038	+	0	NA	intron (NR_040589, intron 3 of 4)	ERVB3_1-LTR_MM|LTR|ERVK	-2398	NM_010113	13645	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	5.990	1.203	0.649	3.553	3.804	1.966	6.565	5.225	4.829	5.018	7.364	3.169	7.378	6.098	5.498	6.540	5.310	6.027	2.238	0.960	0.651	1.363	1.224	0.649	6.015
13282	chr7	73924650	73925799	+	0	NA	Intergenic	Intergenic	88458	NM_009181	20450	Mm.4954	NM_009181	ENSMUSG00000025789	St8sia2	AI323367|ST8SiaII|STX|Siat8b	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	protein-coding	2.687	0.687	0.275	nan	0.756	0.237	4.818	9.248	1.006	0.774	2.993	0.823	5.569	3.621	5.311	3.318	2.828	3.155	0.438	0.302	0.037	0.271	0.395	0.737	nan
4072	chr13	46326480	46328939	+	0	NA	Intergenic	RLTR12E|LTR|ERVK	53988	NM_001005422	380842	Mm.188108	NM_001005422	ENSMUSG00000063529	Stmnd1	Gm1574	stathmin domain containing 1	protein-coding	2.527	0.511	0.313	2.620	1.401	0.452	1.052	0.868	2.588	2.727	0.694	0.400	3.436	5.107	3.068	3.290	1.763	3.260	0.667	nan	0.194	0.902	0.411	0.351	2.695
11452	chr5	93395359	93397671	+	0	NA	Intergenic	Lx7|LINE|L1	128942	NM_007635	12452	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	1.424	1.206	0.394	2.094	2.698	2.047	2.064	2.238	3.031	2.571	7.035	3.381	2.632	4.176	3.126	3.107	1.520	2.077	0.869	0.685	0.354	0.559	0.686	0.476	1.161
1833	chr10	126496184	126497760	+	0	NA	Intergenic	Intergenic	213419	NR_105841	102465224		NR_105841	ENSMUSG00000098756	Mir378d	Gm27650|mmu-mir-378d	microRNA 378d	ncRNA	3.703	5.147	2.056	4.008	3.844	3.779	4.534	4.055	1.836	8.777	1.979	2.144	2.840	3.765	4.838	5.255	4.128	4.033	4.632	2.937	5.803	4.452	5.141	7.686	9.716
3298	chr12	39504356	39509327	+	0	NA	Intergenic	Lx4B|LINE|L1	530535	NM_007487	11861	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	11.674	nan	0.547	5.535	2.625	1.082	4.553	5.370	nan	2.673	3.476	5.595	2.959	5.093	6.673	4.955	2.355	4.365	nan	3.511	1.476	6.033	4.249	2.942	2.670
12728	chr6	127901304	127903947	+	0	NA	intron (NM_026743, intron 1 of 7)	intron (NM_026743, intron 1 of 7)	15003	NM_026743	68498	Mm.174368	NM_026743	ENSMUSG00000030351	Tspan11	1110014F12Rik|AU067806	tetraspanin 11	protein-coding	1.696	nan	0.078	1.428	1.554	0.582	1.606	nan	1.437	2.683	0.436	0.238	3.459	5.349	2.565	3.511	1.996	1.608	0.350	0.180	0.126	0.481	0.266	0.262	3.560
3119	chr11	120586717	120595694	+	0	NA	Intergenic	Intergenic	7160	NM_011568	21681	Mm.1886	NM_011568	ENSMUSG00000025134	Alyref	ALY|REF1|Refbp1|Thoc4	Aly/REF export factor	protein-coding	4.376	nan	0.347	5.096	3.469	2.221	nan	nan	3.842	nan	6.821	3.441	4.719	6.761	3.812	5.585	5.501	nan	1.157	nan	1.264	1.136	1.240	1.095	4.095
13776	chr7	134887811	134890848	+	0	NA	intron (NM_001143802, intron 3 of 3)	B4|SINE|B4	49101	NM_001143802	627214	Mm.323610	NM_001143802	ENSMUSG00000073805	Fam196a	B830028B13Rik	family with sequence similarity 196, member A	protein-coding	6.153	6.110	2.283	4.662	2.395	1.232	6.533	6.013	nan	5.240	3.656	3.159	5.479	6.466	6.529	7.489	5.516	5.856	4.167	2.284	2.578	3.155	2.470	2.395	9.248
11611	chr5	115979422	115986296	+	0	NA	intron (NM_007708, intron 31 of 46)	intron (NM_007708, intron 31 of 46)	41569	NM_031869	19079	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	5.307	4.409	1.155	7.801	3.076	1.980	5.639	5.776	3.431	4.728	5.509	2.525	3.288	5.788	5.508	5.580	2.653	4.959	nan	nan	1.337	2.961	nan	0.461	5.563
4874	chr14	77177853	77180884	+	0	NA	intron (NM_001253759, intron 1 of 19)	intron (NM_001253759, intron 1 of 19)	22605	NM_172813	239188	Mm.441158	NM_172813	ENSMUSG00000022012	Enox1	B230207J08|D230005D02Rik	ecto-NOX disulfide-thiol exchanger 1	protein-coding	3.077	1.023	0.671	1.829	3.605	1.655	3.561	7.904	3.592	4.649	1.672	1.494	3.199	5.395	3.912	4.758	2.318	3.862	1.268	0.860	0.904	0.567	1.209	1.002	1.634
9070	chr2	173071660	173094566	+	0	NA	Intergenic	Intergenic	36412	NM_001081387	664799	Mm.389396	NM_001081387	ENSMUSG00000070495	Ctcfl	Boris|OTTMUSG00000016680	CCCTC-binding factor (zinc finger protein)-like	protein-coding	3.184	1.955	0.637	3.122	2.540	1.209	6.511	8.944	4.206	4.741	6.258	3.294	6.304	5.672	5.392	7.849	4.989	nan	1.966	0.857	0.610	1.563	1.116	0.758	7.831
15458	chr9	106130872	106133068	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-22154	NR_029549	387153		NR_029549	ENSMUSG00000065407	Mir135a-1	Mir135a01|Mirn135|Mirn135a-1|mir-135a-1	microRNA 135a-1	ncRNA	3.336	4.187	2.670	4.701	4.190	3.626	3.195	1.332	nan	1.541	2.945	2.482	2.302	1.187	0.834	nan	1.160	nan	0.742	1.301	2.361	0.635	0.694	0.626	nan
7152	chr18	36487852	36489209	+	0	NA	Intergenic	B4|SINE|B4	27275	NM_010415	15200	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	5.182	2.677	2.112	4.006	1.375	1.960	3.502	4.732	2.909	3.110	2.873	1.566	4.140	4.116	3.616	4.703	3.676	4.984	2.638	1.580	1.705	3.263	2.272	1.931	6.706
3566	chr12	86319525	86321510	+	0	NA	Intergenic	Intergenic	-40600	NM_001159500	26380	Mm.235550	NM_011934	ENSMUSG00000021255	Esrrb	Err2|Errb|Estrrb|Nr3b2	estrogen related receptor, beta	protein-coding	7.617	0.508	1.036	2.622	8.852	9.149	3.868	8.226	2.548	5.416	0.567	0.553	7.647	7.954	3.747	1.976	10.251	3.768	0.666	0.517	0.679	0.492	0.918	0.536	5.615
529	chr1	121964861	121972627	+	0	NA	Intergenic	Lx5|LINE|L1	-400764	NM_025860	66942	Mm.44219	NM_025860	ENSMUSG00000001674	Ddx18	2310005B10Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding	9.736	1.256	0.691	4.520	3.277	1.749	3.280	6.832	2.751	4.154	1.232	1.037	4.092	4.438	3.747	7.070	5.295	6.146	0.790	0.717	0.613	0.811	0.857	0.521	9.943
3556	chr12	85557401	85561002	+	0	NA	Intergenic	Intergenic	-39904	NM_001205052	81703	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	10.879	9.771	3.598	11.469	6.107	3.439	6.829	8.473	5.271	10.414	8.052	4.094	6.158	11.057	7.736	8.393	7.800	7.834	3.353	2.343	2.485	4.269	3.414	2.718	nan
14332	chr8	74192482	74197291	+	0	NA	Intergenic	L1Md_T|LINE|L1	-678288	NM_027837	71597	Mm.158735	NM_027837	ENSMUSG00000031621	Isx	9130012O13Rik|Pix-1	intestine specific homeobox	protein-coding	3.044	nan	0.935	1.860	2.952	1.861	nan	11.100	nan	2.839	1.567	2.793	3.342	3.643	5.363	4.298	5.330	4.236	3.431	3.714	4.348	nan	3.916	3.841	4.448
12830	chr6	143102188	143104633	+	0	NA	Intergenic	Intergenic	-3258	NM_001109688	74741	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	5.921	1.600	0.816	3.490	3.357	1.483	7.548	8.133	4.366	4.653	2.928	2.790	5.763	9.744	7.839	9.394	7.099	4.067	1.918	nan	0.835	nan	2.042	1.045	nan
4309	chr13	98017660	98022229	+	0	NA	intron (NM_012026, intron 9 of 35)	intron (NM_012026, intron 9 of 35)	186221	NM_012026	110596	Mm.252718	NM_012026	ENSMUSG00000021662	Arhgef28	9230110L08Rik|AI323540|D13Bwg1089e|RIP2|Rgnef|RhoGEF|Rhoip2|p190RhoGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding	3.943	2.427	0.648	3.192	2.291	0.944	3.708	4.723	3.168	3.277	3.827	1.616	4.568	6.520	5.163	5.579	nan	4.999	1.183	0.699	0.402	1.328	0.565	0.544	5.463
14847	chr9	7828112	7831801	+	0	NA	intron (NM_001291503, intron 2 of 7)	intron (NM_001291503, intron 2 of 7)	6850	NM_001291503	11797	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	3.439	6.522	4.388	4.210	4.684	2.917	0.870	nan	2.348	2.394	1.439	1.311	1.107	1.732	1.373	nan	nan	nan	nan	2.901	1.704	0.811	2.442	1.959	nan
14639	chr8	119679503	119683919	+	0	NA	intron (NM_023395, intron 4 of 6)	RSINE1|SINE|B4	15346	NM_023395	67866	Mm.87599	NM_023395	ENSMUSG00000023336	Wfdc1	2310058A03Rik|ps20	WAP four-disulfide core domain 1	protein-coding	7.908	4.820	1.389	6.905	4.440	3.267	6.835	10.532	5.471	9.331	5.767	4.016	9.307	9.203	7.571	9.678	5.748	9.441	3.219	1.887	1.955	5.479	4.295	4.024	10.620
987	chr1	185754567	185755783	+	0	NA	intron (NR_030555, intron 4 of 6)	intron (NR_030555, intron 4 of 6)	217839	NR_030555	100124483		NR_030555	ENSMUSG00000076976	Mir297c	Mirn297c	microRNA 297c	ncRNA	3.063	4.453	2.817	1.474	1.014	0.125	2.416	3.667	1.713	1.350	3.189	1.921	4.410	3.483	5.291	4.906	3.816	3.231	2.284	0.493	0.201	0.959	0.748	0.363	3.415
11750	chr5	130292023	130293931	+	0	NA	intron (NM_001015876, intron 11 of 15)	B3|SINE|B2	35940	NM_001015876	100929	Mm.271296	NM_178897	ENSMUSG00000056310	Tyw1	AW125391|Rsafd1	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding	8.005	12.108	4.990	9.732	3.606	1.185	7.899	6.396	6.509	8.044	7.212	4.555	7.363	10.290	10.921	10.255	7.004	8.172	7.387	3.166	3.003	7.416	4.879	3.868	11.145
11225	chr5	52977264	52982017	+	0	NA	intron (NR_040413, intron 2 of 2)	intron (NR_040413, intron 2 of 2)	12652	NR_040413	75954	Mm.258937	NR_040413	ENSMUSG00000106352	5033403H07Rik	-	RIKEN cDNA 5033403H07 gene	ncRNA	4.627	0.788	0.416	4.312	4.387	2.084	4.715	4.299	6.708	9.571	2.437	1.142	6.679	9.328	5.375	7.592	5.428	5.096	0.618	0.858	0.403	0.755	0.942	0.485	5.094
7544	chr19	9153507	9158975	+	0	NA	Intergenic	L1Md_T|LINE|L1	-20675	NM_025610	66514	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	5.754	2.314	1.348	3.874	2.661	1.449	5.051	6.876	4.051	3.466	3.192	3.290	4.003	5.735	4.251	4.940	5.928	6.061	0.803	1.462	0.676	1.118	1.601	1.027	6.163
1150	chr10	20030898	20033292	+	0	NA	intron (NM_008580, intron 7 of 29)	ORR1C2-int|LTR|ERVL-MaLR	97569	NM_008580	26408	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	10.939	15.426	4.137	14.883	5.256	3.808	7.935	7.956	nan	11.435	8.553	4.299	10.833	nan	11.384	13.142	7.577	11.008	6.715	1.843	3.041	9.056	2.979	4.078	15.050
5635	chr15	99159892	99168595	+	0	NA	intron (NM_139140, intron 2 of 12)	B4|SINE|B4	37398	NM_139140	72572	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	6.566	10.196	2.527	5.830	2.422	1.377	4.652	7.170	3.563	4.362	2.272	1.581	7.344	7.747	5.928	5.462	3.245	6.238	1.530	1.274	0.664	2.233	1.046	0.637	6.876
13162	chr7	52079338	52084516	+	0	NA	Intergenic	RLTR17|LTR|ERVK	-66211	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	2.236	4.195	1.735	1.365	1.031	0.490	2.704	6.694	1.386	1.546	0.940	0.593	4.713	3.289	3.517	3.443	2.115	2.707	1.934	1.047	0.717	1.685	1.223	0.665	2.462
10469	chr4	120532489	120535075	+	0	NA	intron (NM_177570, intron 2 of 4)	intron (NM_177570, intron 2 of 4)	1551	NM_177570	194219	Mm.29788	NM_177570	ENSMUSG00000047518	Slfnl1	4933406A14Rik	schlafen like 1	protein-coding	0.413	0.649	0.200	0.388	0.471	0.238	0.425	0.416	0.202	0.454	0.200	0.078	0.257	0.314	0.073	nan	0.435	0.305	5.204	5.351	3.575	4.658	8.344	6.204	0.401
4122	chr13	51804725	51807165	+	0	NA	Intergenic	Intergenic	-12198	NM_013660	20354	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	5.789	1.467	0.792	3.123	2.441	1.069	6.061	4.879	3.414	4.584	3.818	1.212	5.431	5.878	6.356	6.840	4.437	4.876	0.670	nan	0.301	0.539	0.259	0.220	10.859
12168	chr6	38382854	38385227	+	0	NA	intron (NM_153600, intron 2 of 17)	B3A|SINE|B2	2516	NM_153600	264134	Mm.253446	NM_153600	ENSMUSG00000056832	Ttc26	9330141E21Rik|9430097H08Rik|hop|hpy	tetratricopeptide repeat domain 26	protein-coding	10.174	10.552	3.543	10.268	4.665	3.575	11.127	10.611	5.430	16.940	7.569	4.480	9.713	10.761	11.504	15.696	9.613	9.998	5.595	2.949	4.201	nan	nan	7.124	18.993
8164	chr2	33723364	33732797	+	0	NA	Intergenic	L2b|LINE|L2	-77736	NR_045729	320482	Mm.442057	NR_045729	ENSMUSG00000086484	Nron	A630071L07Rik|Gm24353	non-protein coding RNA, repressor of NFAT	ncRNA	6.112	1.745	0.699	4.629	2.323	1.079	7.619	5.899	4.181	4.809	2.282	0.968	8.373	8.001	7.831	10.644	8.803	6.341	1.931	1.405	0.796	2.400	0.997	0.782	13.335
4314	chr13	98514265	98523735	+	0	NA	Intergenic	L1_Mus4|LINE|L1	-83935	NR_045498	70090	Mm.410857	NR_045498	ENSMUSG00000099446	2310005E17Rik	-	RIKEN cDNA 2310005E17 gene	ncRNA	0.435	0.498	0.348	0.286	0.319	0.219	0.463	0.599	0.654	0.490	0.486	0.425	0.279	0.277	0.469	0.622	nan	nan	5.753	4.895	3.769	5.493	4.218	3.475	0.436
10224	chr4	82348432	82354486	+	0	NA	intron (NM_001113210, intron 5 of 11)	intron (NM_001113210, intron 5 of 11)	154320	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.424	0.520	0.325	0.319	0.214	0.144	0.289	0.326	0.365	0.323	0.142	0.235	0.183	0.267	0.328	0.602	0.354	0.416	nan	9.409	5.393	4.334	2.138	1.781	0.530
8489	chr2	102807116	102809500	+	0	NA	Intergenic	HAL1|LINE|L1	93357	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	10.222	2.715	1.751	4.347	3.379	1.238	4.183	6.899	5.407	5.943	3.224	1.485	7.389	4.901	5.687	7.277	8.669	4.848	1.144	1.716	0.530	0.620	1.048	0.615	5.957
5959	chr16	26434067	26435721	+	0	NA	Intergenic	Intergenic	-28241	NM_053241	114141	Mm.275205	NM_053241	ENSMUSG00000038148	Cldn16	PCLN1|claudin-16	claudin 16	protein-coding	0.923	0.565	0.548	0.621		0.327	0.679	0.776	0.324	0.445	4.201	1.041	nan	0.297	0.481	nan	1.210	1.198	0.545	0.441	0.202	0.545	nan	0.318	0.407
2390	chr11	69831513	69833629	+	0	NA	intron (NM_198862, intron 1 of 6)	intron (NM_198862, intron 1 of 6)	2278	NM_198862	216856	Mm.151293	NM_198862	ENSMUSG00000051790	Nlgn2	NL2	neuroligin 2	protein-coding	3.263	3.935	1.280	3.577	2.446	1.169	4.370	3.587	1.425	3.472	1.000	1.295	1.894	4.973	3.473	2.273	3.121	2.617	6.443	7.787	5.080	6.695	7.993	7.188	3.800
12046	chr6	8709528	8710982	+	0	NA	intron (NM_001252266, intron 5 of 11)	intron (NM_001252266, intron 5 of 11)	48203	NM_001252266	15893	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	3.757	0.486	0.672	2.016	2.729	1.949	2.695	5.605	2.616	2.903	0.552	1.254	4.754	5.423	3.321	4.034	6.804	3.789	1.432	1.426	1.517	0.767	2.038	1.242	nan
10795	chr4	139132288	139138765	+	0	NA	Intergenic	Intergenic	-4413	NM_001163006	433771	Mm.305990	NM_001163006	ENSMUSG00000050608	Minos1	2310028O11Rik	mitochondrial inner membrane organizing system 1	protein-coding	3.274	3.700	0.988	5.217	1.942	0.813	3.370	5.610	nan	2.610	4.644	2.947	4.144	3.327	3.689	6.527	2.756	4.037	1.190	0.983	0.692	1.594	nan	0.610	4.388
10816	chr4	140902837	140904424	+	0	NA	Intergenic	B3|SINE|B2	-2730	NM_008812	18600	Mm.2296	NM_008812	ENSMUSG00000028927	Padi2	Pdi|Pdi2|mKIAA0994	peptidyl arginine deiminase, type II	protein-coding	3.687	0.930	0.424	3.034	3.108	1.366	6.230	6.148	2.525	2.747	4.937	1.457	4.980	6.313	4.817	6.030	4.312	3.367	1.325	2.159	1.418	4.672	nan	0.324	5.532
2580	chr11	86551887	86555980	+	0	NA	intron (NM_001199046, intron 4 of 9)	intron (NM_001199046, intron 4 of 9)	8942	NM_001199046	56427	Mm.383207	NM_019756	ENSMUSG00000020513	Tubd1	4930550G19Rik|Tubd	tubulin, delta 1	protein-coding	3.261	2.989	3.310	2.422	4.409	3.899	2.228	2.032	2.657	2.385	1.583	2.297	1.857	2.344	1.403	1.784	2.664	2.415	1.368	2.009	2.043	nan	1.227	1.670	nan
7292	chr18	61297434	61298700	+	0	NA	TTS (NM_133249)	TTS (NM_133249)	77568	NM_146086	225600	Mm.391106	NM_146086	ENSMUSG00000024575	Pde6a	Pdea|nmf282	phosphodiesterase 6A, cGMP-specific, rod, alpha	protein-coding	3.738	nan	0.393	nan	0.962	0.562	6.263	4.132	0.948	0.834	0.366	0.332	3.755	3.342	3.358	3.642	2.989	3.723	nan	0.667	0.194	nan	0.756	0.470	4.115
4900	chr14	79925641	79930532	+	0	NA	Intergenic	Intergenic	-58910	NR_033535	100038734	Mm.387484	NR_033535		Gm10845	ENSMUSG00000075496	predicted gene 10845	ncRNA	3.817	7.188	3.813	3.222	2.732	1.877	3.094	5.172	3.281	2.636	4.474	2.526	3.309	4.186	4.577	4.539	3.626	4.024	1.635	1.222	0.882	1.008	1.442	1.060	3.899
5125	chr15	37160257	37166618	+	0	NA	Intergenic	MTB-int|LTR|ERVL-MaLR	-69599	NM_026496	252973	Mm.244612	NM_026496	ENSMUSG00000022286	Grhl2	0610015A08Rik|BOM|Tcfcp2l3|clft3	grainyhead-like 2 (Drosophila)	protein-coding	6.305	0.583	0.469	4.712	2.409	1.803	8.733	11.283	4.377	6.755	8.391	4.633	9.318	7.985	8.265	7.594	7.406	7.001	4.138	2.375	2.288	nan	2.581	3.030	nan
247	chr1	64150980	64154069	+	0	NA	Intergenic	MTA_Mm-int|LTR|ERVL-MaLR	-31135	NM_033563	93691	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	5.812	1.006	1.010	3.255	3.251	1.549	4.293	4.217	3.217	3.724	1.533	1.451	5.474	6.045	4.313	7.103	4.560	4.980	1.635	1.323	0.710	1.110	1.203	0.924	4.305
1340	chr10	60829152	60838921	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-2455	NM_029770	107449	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	4.065	1.446	0.729	4.946	1.995	1.207	1.318	1.364	2.088	2.046	0.993	1.002	0.957	1.741	1.723	2.444	1.659	2.890	nan	2.757	2.419	6.039	4.047	3.029	3.526
8469	chr2	101561524	101563958	+	0	NA	intron (NM_026592, intron 6 of 6)	intron (NM_026592, intron 6 of 6)	-62007	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	3.375	0.986	0.245	2.107	1.066	0.645	1.545	1.476	1.615	1.912	0.596	0.249	3.289	2.320	2.737	4.463	3.524	4.460	0.431	0.355	0.237	0.478	0.455	0.455	nan
4389	chr13	110028312	110029681	+	0	NA	Intergenic	Intergenic	125187	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	3.948	nan	0.565	2.346	3.322	2.803	3.281	3.337	2.644	2.597	1.619	2.443	2.027	3.429	1.731	2.309	2.368	2.472	0.944	0.966	1.507	nan	0.867	1.520	1.458
289	chr1	72990673	72993120	+	0	NA	Intergenic	RMER15|LTR|ERVL	24003	NM_009407	21958	Mm.425024	NM_009407	ENSMUSG00000026182	Tnp1	Stp-1|TP1|Tp-1	transition protein 1	protein-coding	5.743	0.840	0.374	1.743	1.123	0.635	5.143	4.936	2.101	1.894	1.391	0.695	4.286	2.989	5.543	11.795	8.475	4.460	2.686	1.645	0.551	1.276	3.209	2.362	6.235
13240	chr7	69229863	69231511	+	0	NA	Intergenic	Intergenic	-265407	NR_045940	73796	Mm.410832	NR_045940	ENSMUSG00000108885	4930402F11Rik	-	RIKEN cDNA 4930402F11 gene	ncRNA	nan	0.289	0.556	1.182	0.991	0.656	0.892	2.551	0.866	1.684	0.622	0.172	1.916	2.022	2.240	4.020	2.791	1.567	2.244	2.422	1.626	2.901	1.335	0.875	3.772
8844	chr2	154438475	154441708	+	0	NA	intron (NM_009823, intron 1 of 10)	intron (NM_009823, intron 1 of 10)	3607	NM_009823	12396	Mm.29914	NM_009823	ENSMUSG00000038533	Cbfa2t2	A430091M07|C330013D05Rik|Cbfa2t2h|MTGR1	core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	protein-coding	8.462	8.469	2.762	8.092	4.986	2.858	5.823	5.720	nan	nan	4.244	3.094	nan	6.030	6.174	7.821	6.271	7.923	6.441	6.908	3.921	4.366	7.339	4.599	10.823
4739	chr14	62176419	62179835	+	0	NA	Intergenic	Intergenic	114852	NM_173419	239133	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	1.255	nan	0.965	0.949	1.660	1.094	0.654	2.250	1.271	0.849	1.990	1.895	0.923	0.960	0.959	1.174	1.155	1.228	4.173	3.558	3.913	4.149	5.141	5.064	1.216
2119	chr11	45893898	45906480	+	0	NA	intron (NM_001346760, intron 8 of 11)	intron (NM_001346760, intron 8 of 11)	44746	NM_028185	72290	Mm.249827	NM_028185	ENSMUSG00000044847	Lsm11	2210404M20Rik|AV079530	U7 snRNP-specific Sm-like protein LSM11	protein-coding	6.583	4.632	1.636	5.067	8.849	5.379	4.686	4.563	5.135	7.297	1.853	1.187	5.000	7.953	5.453	nan	4.358	nan	nan	1.673	1.203	nan	nan	0.598	4.674
13313	chr7	80667427	80673927	+	0	NA	intron (NM_173863, intron 2 of 14)	intron (NM_173863, intron 2 of 14)	18200	NM_173863	70461	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	5.631	3.151	2.560	nan	4.641	4.140	3.245	4.781	4.221	4.381	3.624	3.220	4.737	4.932	3.983	nan	4.437	4.600	2.596	2.933	2.753	1.429	2.584	2.715	nan
11513	chr5	104448945	104454589	+	0	NA	Intergenic	Intergenic	-7690	NM_008861	18764	Mm.6442	NM_008861	ENSMUSG00000034462	Pkd2	C030034P18Rik|PC2|TRPP2	polycystic kidney disease 2	protein-coding	8.686	2.785	1.438	7.457	6.144	3.726	9.094	7.670	7.247	6.746	2.417	3.762	8.859	11.058	9.160	9.528	7.633	8.922	nan	2.346	1.497	2.167	2.809	2.291	7.359
7592	chr19	12544752	12552075	+	0	NA	Intergenic	LTRIS2|LTR|ERV1	-25097	NM_001346545	107373	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	6.701	7.408	4.248	5.904	7.744	4.092	8.237	5.975	nan	6.194	3.984	3.081	5.116	9.660	6.755	nan	6.239	6.614	1.499	2.526	1.935	1.972	1.894	1.241	8.287
13433	chr7	97187875	97191502	+	0	NA	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	107937	NM_010248	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	5.285	4.042	1.500	4.503	2.532	1.542	1.679	5.292	3.395	3.659	3.748	2.363	2.367	3.301	3.215	nan	2.545	3.312	nan	1.401	0.927	1.710	0.722	0.507	3.048
9471	chr3	89324506	89327285	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-3016	NM_010108	13638	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	4.432	0.738	0.192	2.595	2.888	1.762	4.817	3.468	1.951	3.385	0.381	0.499	3.918	5.601	3.309	4.142	3.623	3.550	5.192	4.511	2.988	5.446	4.264	2.594	8.256
147	chr1	43224448	43227244	+	0	NA	Intergenic	Intergenic	-29085	NM_001289533	14200	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	2.796	1.044	0.542	0.797	0.494	0.348	4.599	5.311	2.353	1.656	7.208	4.309	3.622	3.326	4.340	3.338	1.628	2.808	nan	0.547	0.482	1.362	1.540	1.113	2.199
1249	chr10	41950645	41951876	+	0	NA	intron (NM_001034858, intron 11 of 17)	MTD|LTR|ERVL-MaLR	63821	NM_001013370	140742	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	2.830	0.872	0.891	3.130	5.520	3.065	1.942	5.699	1.529	2.319	1.605	1.058	2.329	3.414	2.546	1.833	3.220	3.439	0.868	0.983	1.187	1.941	0.705	0.480	1.955
6846	chr17	73136383	73138518	+	0	NA	intron (NM_001081071, intron 1 of 5)	intron (NM_001081071, intron 1 of 5)	29465	NM_001177967	225010	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	3.290	0.746	0.753	2.654	2.930	0.921	2.157	2.257	nan	1.915	1.225	0.807	3.696	5.171	3.309	2.719	1.700	3.316	2.052	1.423	0.530	1.599	1.496	1.175	2.457
5211	chr15	58886697	58888048	+	0	NA	Intergenic	Intergenic	-1857	NM_175226	75841	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	3.996	3.800	1.510	2.631	2.705	0.866	5.101	3.823	nan	nan	0.926	0.772	4.545	3.790	5.034	nan	1.737	3.086	1.957	1.273	1.308	1.875	1.405	1.748	2.714
1142	chr10	19809589	19812092	+	0	NA	Intergenic	Intergenic	40619	NM_029529	76157	Mm.74324	NM_029529	ENSMUSG00000050473	Slc35d3	6230421J19Rik|Frcl1	solute carrier family 35, member D3	protein-coding	4.539	0.653	0.360	2.129	2.350	1.014	3.151	5.602	4.148	3.367	4.593	3.095	3.394	5.504	4.935	5.493	4.326	3.653	0.673	0.712	0.224	0.581	0.645	0.272	4.648
10791	chr4	138810682	138817601	+	0	NA	intron (NM_011110, intron 1 of 4)	intron (NM_011110, intron 1 of 4)	5116	NM_011110	18784	Mm.486532	NM_011110	ENSMUSG00000041193	Pla2g5	PLA2|sPLA2	phospholipase A2, group V	protein-coding	4.549	3.536	1.391	5.655	5.717	3.447	5.642	3.875	5.051	5.512	3.392	2.724	3.930	7.256	5.224	5.667	2.502	7.184	1.011	0.779	0.744	1.859	nan	0.690	7.572
5267	chr15	66390175	66392584	+	0	NA	intron (NM_019457, intron 11 of 11)	MTE-int|LTR|ERVL-MaLR	-105155	NM_152923	110862	Mm.255585	NM_152923	ENSMUSG00000056258	Kcnq3	-	potassium voltage-gated channel, subfamily Q, member 3	protein-coding	6.989	6.759	2.306	7.438	2.362	0.671	3.282	3.807	4.754	3.300	3.581	2.187	5.451	4.729	4.879	4.592	4.146	5.725	1.845	1.368	0.616	1.981	0.747	0.641	3.400
4708	chr14	57513101	57515622	+	0	NA	intron (NM_009376, intron 24 of 25)	intron (NM_009376, intron 24 of 25)	-10468	NM_145837	239114	Mm.390726	NM_145837	ENSMUSG00000050222	Il17d	AI462269|IL-17D	interleukin 17D	protein-coding	3.026	nan	1.098	1.768	4.128	4.530	2.569	3.964	2.071	2.307	1.300	2.186	1.741	2.257	1.914	1.672	2.301	1.985	1.387	1.557	1.455	0.916	2.236	1.681	1.267
1291	chr10	53315699	53319204	+	0	NA	intron (NM_001204983, intron 4 of 12)	intron (NM_001204983, intron 4 of 12)	-20235	NM_023129	18821	Mm.34145	NM_023129	ENSMUSG00000038583	Pln	Plb	phospholamban	protein-coding	8.636	11.335	3.695	7.008	3.398	1.667	4.914	5.540	4.425	10.198	4.475	3.638	4.765	7.131	6.815	7.733	6.733	7.360	4.596	2.353	2.057	4.630	2.279	3.091	10.171
2095	chr11	43206014	43207455	+	0	NA	intron (NM_176999, intron 10 of 22)	LTR86A1|LTR|ERVL	56857	NM_176999	319767	Mm.252339	NM_176999	ENSMUSG00000055415	Atp10b	5930426O13Rik|9030605H24Rik	ATPase, class V, type 10B	protein-coding	0.512	7.908	4.401	0.791	0.544		0.329	nan	0.447	0.576	0.906	0.352	0.196	0.326	0.336	nan	0.241	1.116	nan	1.174	0.765	nan	nan	2.220	0.438
5584	chr15	95716389	95719253	+	0	NA	Intergenic	B3A|SINE|B2	33770	NR_131148	629300	Mm.247258	NR_131148		Gm6961	EG629300	predicted gene 6961	ncRNA	7.492	3.354	1.765	5.928	4.991	1.989	10.802	10.096	5.548	7.525	4.026	3.985	9.888	10.566	8.778	7.901	7.618	7.236	4.745	2.816	1.829	3.570	4.047	1.753	6.835
2599	chr11	87422054	87425652	+	0	NA	intron (NM_031386, intron 1 of 30)	B2_Mm1t|SINE|B2	-3738	NM_001199293	83560	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	nan	0.896	0.363	3.448	3.293	2.195	2.586	3.437	4.122	4.352	1.028	0.780	3.286	6.042	4.313	4.789	4.565	4.036	0.914	1.096	1.160	nan	0.566	0.355	3.893
2601	chr11	87501533	87505163	+	0	NA	intron (NM_001199293, intron 10 of 30)	intron (NM_001199293, intron 10 of 30)	-75041	NM_001284398	18952	Mm.2214	NM_011129	ENSMUSG00000020486	Sept4	ARTS|Bh5|OTTMUSG00000001265|Pnutl2	septin 4	protein-coding	nan	4.833	1.851	4.718	2.239	1.067	4.544	4.803	4.991	5.768	3.019	1.764	5.553	7.625	6.906	9.441	5.672	6.932	0.691	0.655	0.523	nan	0.603	0.465	8.486
6759	chr17	56903494	56905184	+	0	NA	intron (NM_022328, intron 4 of 11)	intron (NM_022328, intron 4 of 11)	28706	NM_030141	78625	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	8.314	12.179	4.756	8.245	8.258	7.743	13.063	8.904	6.671	8.573	6.450	4.687	7.390	10.490	10.409	12.118	9.655	7.378	6.116	4.500	6.697	6.151	8.000	7.846	14.120
14045	chr8	13538252	13542787	+	0	NA	Intergenic	B1F2|SINE|Alu	21942	NM_025601	66501	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	5.749	1.080	0.645	3.225	2.299	1.173	3.023	3.711	4.056	4.823	0.801	0.805	6.063	5.054	5.304	7.199	5.208	6.493	1.931	1.441	1.100	2.295	1.518	1.196	7.788
5551	chr15	86255287	86257815	+	0	NA	intron (NM_145476, intron 4 of 12)	intron (NM_145476, intron 4 of 12)	42092	NM_145476	223754	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	1.622	2.236	0.869	nan	0.361	0.033	nan	1.861	nan	1.115	0.561	0.541	3.048	1.072	2.194	4.409	3.454	nan	nan	0.469	0.370	nan	0.153	0.248	1.936
5346	chr15	75898827	75900885	+	0	NA	intron (NM_001285434, intron 2 of 7)	intron (NM_001285434, intron 2 of 7)	-5375	NM_172607	223646	Mm.288368	NM_172607	ENSMUSG00000022574	Naprt	9130210N20Rik|Naprt1	nicotinate phosphoribosyltransferase	protein-coding	5.778	6.521	1.419	5.276	3.180	1.398	7.350	10.102	3.261	7.180	nan	2.526	6.881	6.231	5.601	7.589	4.257	6.142	4.120	2.842	2.532	6.088	3.993	3.526	10.547
1052	chr1	195088028	195091299	+	0	NA	intron (NR_132621, intron 1 of 11)	intron (NR_132621, intron 1 of 11)	2585	NR_132621	17221	Mm.12884	NM_010778	ENSMUSG00000016493	Cd46	Mcp	CD46 antigen, complement regulatory protein	protein-coding	3.577	4.949	2.128	3.608	1.059	0.803	1.732	1.811	2.103	2.365	1.294	0.674	1.415	2.239	1.949	3.411	2.778	2.208	5.163	5.109	3.726	7.443	nan	1.870	nan
10780	chr4	138645543	138652652	+	0	NA	Intergenic	Intergenic	-25105	NM_029401	75718	Mm.251530	NM_029401	ENSMUSG00000028753	Vwa5b1	4931403E03Rik	von Willebrand factor A domain containing 5B1	protein-coding	nan	0.806	0.468	3.682	1.496	1.050	1.345	1.968	nan	3.497	1.837	1.522	1.254	2.071	1.986	1.880	0.562	2.517	4.213	2.472	2.335	7.704	nan	2.702	3.409
10906	chr4	149262944	149265617	+	0	NA	intron (NM_008441, intron 9 of 20)	intron (NM_008441, intron 9 of 20)	43418	NM_207682	16561	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	3.555	3.065	1.463	6.108	2.273	1.310	1.438	1.838	2.559	2.749	2.162	1.353	1.208	2.628	2.584	2.381	0.861	3.295	1.392	0.820	1.005	2.168	1.454	1.169	3.111
13517	chr7	108423218	108424708	+	0	NA	TTS (NM_146738)	TTS (NM_146738)	1390	NM_146738	258733	Mm.377663	NM_146738	ENSMUSG00000095239	Olfr497	MOR204-9	olfactory receptor 497	protein-coding	1.682	1.225	0.681	2.841	2.601	2.024	1.959	1.577	1.900	2.521	0.507	0.601	1.543	3.934	2.519	2.749	1.142	2.761	nan	0.847	0.319	0.496	0.664	0.530	2.563
5471	chr15	81414772	81419345	+	0	NA	intron (NM_001347075, intron 2 of 9)	ERVB7_2B-LTR_MM|LTR|ERVK	-8785	NM_021317	57755	Mm.440590	NM_021317	ENSMUSG00000047108	Dnajb7	4933424H20Rik|Dj5|mDj5	DnaJ heat shock protein family (Hsp40) member B7	protein-coding	12.775	14.617	5.314	nan	6.436	3.988	nan	14.169	7.829	14.581	nan	5.289	13.099	nan	11.844	11.265	nan	11.128	6.904	3.748	2.935	nan	4.914	5.170	14.561
5661	chr15	100031523	100037438	+	0	NA	Intergenic	RMER6C|LTR|ERVK	-4184	NM_001159361	239667	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	3.889	3.986	2.274	3.946	5.150	4.518	3.384	9.277	2.694	3.093	5.706	1.960	3.766	4.997	3.125	2.669	2.998	4.517	1.241	0.896	0.809	1.102	0.839	0.866	3.672
974	chr1	184183200	184187280	+	0	NA	Intergenic	Intergenic	150779	NM_022019	63953	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	10.938	5.242	1.649	6.259	7.545	5.323	8.502	9.521	7.275	10.560	6.379	3.995	12.414	12.867	8.446	12.560	10.187	8.330	1.247	1.896	1.663	2.004	1.219	1.385	10.265
2629	chr11	90118123	90119584	+	0	NA	Intergenic	Intergenic	88505	NM_026433	67888	Mm.212428	NM_026433	ENSMUSG00000069763	Tmem100	1810057C19Rik|AV011897	transmembrane protein 100	protein-coding	5.643	4.564	0.948	3.906	1.248	0.859	1.950	3.844	2.492	2.709	1.664	0.883	2.178	3.444	2.282	4.812	3.156	4.171	0.421	0.816	0.575	1.450	0.475	0.325	4.193
8016	chr2	25096021	25097234	+	0	NA	Intergenic	Intergenic	-1422	NM_172204	241275	Mm.218774	NM_172204	ENSMUSG00000036805	Noxa1	NY-CO-31|SDCCAG31	NADPH oxidase activator 1	protein-coding	2.782	2.024	0.317	3.346	1.014	0.207	2.510	9.228	2.501	2.836	4.252	2.120	3.799	3.857	4.589	5.413	3.871	4.006	2.662	1.344	0.818	4.555	2.216	1.319	5.928
1668	chr10	96212370	96215005	+	0	NA	Intergenic	Intergenic	-12520	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	9.444	2.938	1.157	4.575	4.216	1.511	6.050	7.045	6.246	5.933	nan	2.936	6.715	6.122	7.268	6.666	7.818	7.781	nan	1.866	1.018	nan	1.965	1.982	6.231
12770	chr6	134391889	134394643	+	0	NA	Intergenic	Intergenic	-3063	NM_025778	66813	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	7.214	0.984	0.493	4.378	4.531	2.848	10.144	9.210	5.605	5.382	6.001	6.459	11.489	9.970	7.655	7.246	9.782	4.929	5.629	4.970	2.902	4.779	6.609	5.830	5.527
8368	chr2	74416077	74417389	+	0	NA	Intergenic	MIR|SINE|MIR	-109016	NR_040501	73962	Mm.50289	NR_040501	ENSMUSG00000085405	4930441J16Rik	Astx1a|Astx1b|Astx1c	RIKEN cDNA 4930441J16 gene	ncRNA	5.214	10.418	2.515	4.728	0.794	0.770	2.985	4.028	2.687	6.447	3.863	1.364	3.846	3.611	4.950	8.834	3.723	5.265	3.024	2.509	1.417	5.723	2.388	1.958	12.042
9427	chr3	87359101	87361338	+	0	NA	intron (NM_009690, intron 1 of 5)	intron (NM_009690, intron 1 of 5)	2338	NM_009690	11801	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	1.175	0.575	0.469	0.745	0.897	0.283	6.761	3.585	1.470	1.888	1.421	1.256	3.673	5.063	2.356	2.414	2.069	2.223	nan	0.439	0.256	0.871	0.431	0.307	2.177
13412	chr7	91835917	91839063	+	0	NA	intron (NM_011807, intron 4 of 22)	Lx5|LINE|L1	-224904	NM_001243046	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	6.644	7.006	3.243	7.802	4.817	3.578	5.075	8.938	nan	8.574	4.121	2.906	7.321	8.039	7.640	nan	5.256	7.631	4.269	1.814	2.481	4.503	2.875	2.767	8.645
12562	chr6	108391212	108402865	+	0	NA	intron (NM_010585, intron 30 of 61)	MTD|LTR|ERVL-MaLR	-92705	NR_106121	102465766		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	6.404	2.194	0.973	4.037	7.413	3.359	9.016	8.405	6.232	6.962	4.479	3.919	8.573	10.188	8.176	10.540	6.345	7.078	nan	1.312	0.675	1.636	1.189	0.590	6.251
6278	chr16	97830916	97833535	+	0	NA	intron (NM_144789, intron 5 of 23)	intron (NM_144789, intron 5 of 23)	19002	NM_144789	114604	Mm.328741	NM_144789	ENSMUSG00000014039	Prdm15	C21orf83|E130018M06Rik|ORF62|Zfp298	PR domain containing 15	protein-coding	6.046	0.408	0.151	4.226	2.266	1.272	7.310	10.250	nan	3.778	2.399	2.507	9.308	8.335	8.455	11.647	5.941	7.617	nan	0.568	0.739	2.500	1.713	1.133	14.615
636	chr1	135085685	135087996	+	0	NA	intron (NM_001033409, intron 1 of 17)	intron (NM_001033409, intron 1 of 17)	18436	NM_001033409	329252	Mm.279594	NM_001033409	ENSMUSG00000042793	Lgr6	A530037C04Rik|D830026M09	leucine-rich repeat-containing G protein-coupled receptor 6	protein-coding	4.283	0.477	0.459	nan	7.960	6.961	7.560	6.333	3.027	3.297	1.144	2.510	7.715	6.924	4.057	6.375	4.396	4.801	2.418	1.786	1.161	1.011	7.106	6.147	3.749
14874	chr9	15308524	15313037	+	0	NA	intron (NM_029248, intron 5 of 6)	intron (NM_029248, intron 5 of 6)	-1831	NR_106108	102465758		NR_106108	ENSMUSG00000105847	Gm25500	Mir7650|mmu-mir-7650	predicted gene, 25500	ncRNA	3.763	2.355	1.411	4.725	0.997	0.670	2.232	2.619	2.031	2.470	1.189	1.000	2.168	2.412	3.030	2.738	1.619	4.033	2.871	2.163	1.038	3.986	2.026	1.325	5.095
14708	chr8	124117669	124118731	+	0	NA	Intergenic	Intergenic	94727	NM_001029876	382038	Mm.334891	NM_001029876	ENSMUSG00000031976	Urb2	C77575|mKIAA0133	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	protein-coding	5.347	nan	0.212	5.495	1.809	0.510	2.346	3.424	3.179	3.889	0.970	0.848	3.844	4.045	5.245	8.617	2.714	5.978	nan	0.496	0.346	nan	0.165	nan	11.014
11247	chr5	54385510	54387194	+	0	NA	Intergenic	B3A|SINE|B2	36360	NR_038045	330086	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13|ENSMUSG00000072936	predicted gene 10440	ncRNA	3.808	5.609	2.643	4.264	2.749	1.494	5.197	5.190	2.959	3.815	3.404	2.106	3.762	4.999	5.842	5.339	3.082	5.268	3.125	2.109	0.904	2.915	2.639	1.951	5.593
10437	chr4	118215027	118217489	+	0	NA	intron (NM_011213, intron 22 of 32)	intron (NM_011213, intron 22 of 32)	-5694	NR_106085	102466820		NR_106085	ENSMUSG00000098596	Mir7226	Gm27630|mmu-mir-7226	microRNA 7226	ncRNA	9.509	1.026	0.265	7.308	5.799	2.824	10.173	11.243	6.662	8.837	8.097	4.448	9.342	12.904	10.697	12.437	6.216	9.929	1.842	1.168	0.800	1.062	1.463	0.923	17.039
5799	chr16	11170737	11176435	+	0	NA	intron (NM_145931, intron 1 of 22)	intron (NM_145931, intron 1 of 22)	2807	NR_027502	106205	Mm.226860	NM_145931	ENSMUSG00000037965	Zc3h7a	A430104C18Rik|AI447294|AW556219|HSPC055|Zc3h7|Zc3hdc7	zinc finger CCCH type containing 7 A	protein-coding	11.263	5.558	2.668	5.590	5.733	3.529	8.399	13.181	3.658	5.905	4.332	2.900	8.306	9.931	7.508	9.841	7.043	7.124	3.818	2.484	2.207	3.104	3.295	2.968	10.692
13013	chr7	25990126	25995405	+	0	NA	Intergenic	L1Md_A|LINE|L1	-68730	NM_007813	13089	Mm.482696	NM_007813	ENSMUSG00000040583	Cyp2b13	-	cytochrome P450, family 2, subfamily b, polypeptide 13	protein-coding	3.317	7.793	2.250	4.134	3.711	1.666	4.005	8.952	2.666	3.655	5.452	2.265	4.721	7.739	5.031	5.065	2.306	4.667	2.592	1.558	0.987	2.176	1.407	0.810	6.027
117	chr1	38082238	38087662	+	0	NA	intron (NM_019570, intron 7 of 22)	intron (NM_019570, intron 7 of 22)	44712	NM_019570	56210	Mm.389103	NM_019570	ENSMUSG00000026082	Rev1	1110027I23Rik|AU022044|Rev1l	REV1, DNA directed polymerase	protein-coding	3.287	1.176	1.115	1.744	2.396	1.281	1.088	0.868	2.778	2.960	1.668	1.143	2.728	2.779	1.372	3.319	1.727	4.163	1.114	0.610	0.548	0.685	0.411	0.320	1.768
12338	chr6	81999646	82004952	+	0	NA	Intergenic	L1Md_A|LINE|L1	-36350	NM_026490	56284	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding	4.229	0.422	0.398	2.042	2.705	2.045	10.781	7.222	2.799	4.384	3.526	1.602	5.946	8.987	4.796	7.592	4.930	4.119	0.579	0.714	0.583	0.509	0.616	0.443	nan
2207	chr11	54059260	54065248	+	0	NA	intron (NM_019417, intron 2 of 6)	intron (NM_019417, intron 2 of 6)	6763	NM_019417	30794	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	5.598	1.192	0.430	3.464	2.196	0.965	5.380	2.140	3.593	4.719	0.855	0.781	6.013	6.944	5.657	8.317	5.661	5.165	nan	0.802	0.541	1.252	0.891	0.621	9.037
9996	chr4	40789295	40804800	+	0	NA	Intergenic	ORR1A4-int|LTR|ERVL-MaLR	-39162	NM_021535	74255	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	nan	5.742	2.230	7.871	5.884	3.062	4.307	6.656	5.730	6.848	5.609	3.397	5.759	7.975	6.156	nan	3.774	nan	4.872	2.027	1.824	3.805	2.446	1.939	7.410
3754	chr12	113187109	113192313	+	0	NA	TTS (NM_153776)	TTS (NM_153776)	3808	NM_153776	69195	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	nan	0.678	0.503	1.836	0.310	0.120	1.596	1.753	1.015	0.962	0.697	0.722	1.458	0.991	2.045	nan	1.215	1.556	3.069	1.799	1.418	6.138	2.512	1.916	nan
7215	chr18	46537195	46538930	+	0	NA	Intergenic	Intergenic	-12091	NM_173423	240263	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	5.082	0.663	0.325	3.160	3.747	2.381	3.874	4.465	4.100	4.516	2.374	1.326	5.559	4.491	4.422	4.845	3.129	5.542	1.443	0.373	0.565	1.144	0.444	0.933	4.067
5283	chr15	68243991	68246364	+	0	NA	intron (NM_001145888, intron 1 of 15)	intron (NM_001145888, intron 1 of 15)	13679	NM_001145888	380993	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	9.059	1.235	0.519	4.719	1.512	0.637	8.003	7.209	3.846	4.641	0.666	0.441	9.837	6.943	9.634	8.943	6.764	10.564	0.825	0.633	0.335	1.076	0.305	0.207	11.056
9407	chr3	85458781	85462683	+	0	NA	Intergenic	Intergenic	-6645	NR_130326	100316670		NR_130326	ENSMUSG00000080424	Mir466k	Mirn466k|mmu-mir-466k	microRNA 466k	ncRNA	0.551	0.825	0.303	0.524	0.221	0.064	0.547	0.221	0.468	0.356	0.491	0.265	0.369	0.639	0.592	nan	0.443	0.854	2.999	0.849	0.683	3.537	0.556	0.272	1.051
5460	chr15	80997642	80999764	+	0	NA	intron (NM_134091, intron 1 of 21)	CT-rich|Low_complexity|Low_complexity	20938	NM_134091	105835	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	9.256	1.436	1.264	4.357	7.626	6.091	9.440	11.478	4.980	3.893	6.454	3.089	9.013	9.193	6.415	5.685	10.431	6.289	1.242	1.403	1.324	nan	1.186	1.153	6.489
8290	chr2	60713697	60721346	+	0	NA	intron (NM_001159564, intron 1 of 17)	intron (NM_001159564, intron 1 of 17)	5082	NM_001159564	16420	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	7.728	6.312	2.883	7.515	4.331	2.528	5.180	7.749	5.443	8.354	7.359	4.568	5.962	6.904	6.350	6.873	6.028	8.219	3.561	2.020	1.833	3.457	2.598	2.608	8.622
8658	chr2	128664105	128665510	+	0	NA	intron (NM_008569, intron 16 of 47)	intron (NM_008569, intron 16 of 47)	22588	NM_008569	17222	Mm.277408	NM_008569	ENSMUSG00000014355	Anapc1	2610021O03Rik|AI047775|AI853536|AW547281|Apc1|Mcpr|tsg24	anaphase promoting complex subunit 1	protein-coding	5.270	0.801	0.555	1.387	0.520	0.381	5.559	2.297	2.784	2.314	1.200	0.392	4.928	3.705	4.429	5.223	5.033	3.269	nan	0.614	0.349	0.604	0.396	0.221	3.884
13374	chr7	87513169	87517912	+	0	NA	Intergenic	L1Md_A|LINE|L1	-22028	NM_001317397	22173	Mm.238127	NM_011661	ENSMUSG00000004651	Tyr	Oca1|albino|c|skc35	tyrosinase	protein-coding	6.828	8.565	3.721	6.964	4.082	3.213	6.796	7.094	nan	9.242	5.307	3.218	4.727	7.403	6.793	nan	4.968	nan	2.534	1.578	2.191	nan	1.664	2.399	10.346
4586	chr14	32226197	32228559	+	0	NA	intron (NM_011960, intron 7 of 17)	intron (NM_011960, intron 7 of 17)	25407	NM_011960	26430	Mm.15962	NM_011960	ENSMUSG00000021911	Parg	AI413217	poly (ADP-ribose) glycohydrolase	protein-coding	3.672	16.178	7.672	4.391	2.022	1.244	1.111	1.873	2.187	2.551	1.607	0.770	0.804	2.322	2.386	2.560	nan	3.011	0.488	1.203	1.071	nan	0.307	0.161	2.666
13525	chr7	108613805	108615965	+	0	NA	Intergenic	Lx3B|LINE|L1	2576	NM_001011871	258215	Mm.377380	NM_001011871	ENSMUSG00000058244	Olfr506	MOR204-23	olfactory receptor 506	protein-coding	5.668	6.972	2.382	3.525	3.788	0.919	3.527	4.127	2.669	4.167	2.400	0.947	2.881	5.133	4.744	4.574	2.973	4.549	nan	2.545	0.838	2.187	2.537	1.549	5.206
13396	chr7	89004167	89008174	+	0	NA	Intergenic	Intergenic	332617	NM_028343	72759	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	5.143	7.023	2.444	4.271	1.243	0.612	1.269	1.261	nan	3.295	2.641	0.723	1.301	1.894	1.839	2.659	nan	3.184	1.109	2.102	0.969	nan	0.539	0.756	4.385
7572	chr19	10505343	10513147	+	0	NA	intron (NM_025333, intron 3 of 3)	PB1D11|SINE|Alu	15964	NM_025333	66072	Mm.180063	NM_025333	ENSMUSG00000024668	Sdhaf2	0610038F07Rik|AA407634|AW049997	succinate dehydrogenase complex assembly factor 2	protein-coding	2.187	0.713	0.414	2.315	1.733	0.619	2.792	4.617	nan	3.105	0.273	0.604	2.449	3.493	3.088	nan	3.691	3.226	1.943	2.168	1.398	5.600	2.746	1.710	4.745
15709	chrX	35916096	35919296	+	0	NA	intron (NM_001009947, intron 1 of 52)	IAPEz-int|LTR|ERVK	28864	NM_001009947	75974	Mm.32873	NM_177745	ENSMUSG00000031093	Dock11	5033414A21Rik|8030476J24|Zizimin2|sph238	dedicator of cytokinesis 11	protein-coding	5.554	6.193	2.956	4.607	3.623	1.356	3.729	4.766	3.881	6.014	3.703	2.074	3.386	5.739	4.946	6.066	3.729	4.711	3.542	2.906	1.680	3.517	2.979	2.022	6.362
2179	chr11	52147723	52151103	+	0	NA	Intergenic	Intergenic	-3885	NM_207227	211472	Mm.377235	NM_207227	ENSMUSG00000062204	Olfr1373	GA_x6K02T2QP88-3283154-3284089	olfactory receptor 1373	protein-coding	1.790	1.330	1.100	1.223	0.997	0.668	2.695	2.634	2.860	1.732	5.673	4.925	2.742	2.560	1.755	nan	1.038	nan	nan	2.628	1.539	nan	nan	2.974	0.743
2172	chr11	51734327	51736998	+	0	NA	intron (NM_001290785, intron 3 of 22)	B3|SINE|B2	21172	NM_001290785	77371	Mm.33878	NM_175255	ENSMUSG00000036391	Sec24a	-	Sec24 related gene family, member A (S. cerevisiae)	protein-coding	6.369	2.613	1.370	5.515	5.205	3.290	2.018	2.862	2.877	3.567	4.698	2.166	2.900	4.642	2.593	3.346	2.608	4.071	nan	1.902	2.606	2.605	nan	1.320	4.313
15637	chr9	123265671	123269663	+	0	NA	Intergenic	Intergenic	-6878	NM_001002267	72309	Mm.8569	NM_001002267	ENSMUSG00000054871	Tmem158	2310037P21Rik|Ris1	transmembrane protein 158	protein-coding	nan	0.582	0.752	nan	nan	0.193	nan	nan	nan	nan	0.891	1.396	nan	nan	nan	nan	0.879	nan	7.948	6.596	3.615	6.807	8.398	5.811	nan
10394	chr4	115519276	115522299	+	0	NA	intron (NM_010011, intron 3 of 12)	B1_Mus2|SINE|Alu	2500	NM_010011	13117	Mm.10742	NM_010011	ENSMUSG00000066072	Cyp4a10	AI647584|Cyp4a|D4Rp1|Msp-3|RP1	cytochrome P450, family 4, subfamily a, polypeptide 10	protein-coding	6.225	3.446	1.061	4.786	2.991	1.953	2.073	3.657	3.280	3.426	1.811	1.014	2.965	5.403	4.890	4.712	2.775	5.045	5.133	4.701	2.806	8.833	2.387	1.278	6.217
15688	chrX	13055184	13058080	+	0	NA	Intergenic	B4|SINE|B4	14617	NR_038158	70489	Mm.383563	NR_038158	ENSMUSG00000087424	5730405O15Rik	-	RIKEN cDNA 5730405O15 gene	ncRNA	1.855	0.461	0.348	3.581	2.890	1.240	0.607	1.832	2.259	1.896	0.684	1.100	0.767	2.495	1.184	1.137	1.220	2.745	0.801	0.514	0.466	0.714	0.697	0.391	0.945
15478	chr9	107224062	107232320	+	0	NA	intron (NM_153413, intron 1 of 52)	intron (NM_153413, intron 1 of 52)	3718	NM_153413	208869	Mm.150259	NM_153413	ENSMUSG00000039716	Dock3	MOCA|PBP|mKIAA0299	dedicator of cyto-kinesis 3	protein-coding	6.634	1.397	0.668	5.407	2.090	1.190	3.858	5.252	nan	5.949	3.050	0.923	4.946	7.236	4.676	7.789	3.748	7.585	0.714	1.045	1.001	1.682	0.664	0.510	nan
10126	chr4	59250182	59255899	+	0	NA	Intergenic	Intergenic	-7011	NR_105031	101055769	Mm.421401	NR_105031		Gm12596	OTTMUSG00000007649	predicted gene 12596	ncRNA	6.068	nan	1.072	2.721	3.777	1.759	nan	7.742	3.042	3.331	2.515	2.508	4.203	5.560	4.578	6.031	2.710	4.352	nan	1.305	0.908	2.215	1.322	0.654	5.995
7577	chr19	10712629	10715452	+	0	NA	3' UTR (NM_181403, exon 5 of 5)	3' UTR (NM_181403, exon 5 of 5)	24934	NM_007650	12507	Mm.779	NM_007650	ENSMUSG00000024669	Cd5	Ly-1|Ly-12|Ly-A|Lyt-1	CD5 antigen	protein-coding	0.421	0.497	0.573	0.357	0.202	0.176	0.668	0.630	nan	0.238	0.364	0.251	0.181	0.467	0.423	nan	0.587	0.399	2.071	3.046	2.684	3.626	8.277	6.821	0.628
6646	chr17	45380725	45385879	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	50405	NM_152810	71702	Mm.28270	NM_152810	ENSMUSG00000023932	Cdc5l	1200002I02Rik|AA408004|PCDC5RP	cell division cycle 5-like (S. pombe)	protein-coding	0.978	0.991	0.420	0.721	0.662	0.450	1.034	0.758	0.715	0.974	7.360	1.370	0.713	nan	1.187	1.984	nan	0.820	1.275	0.732	0.575	1.360	0.707	0.381	2.059
12819	chr6	138087922	138093786	+	0	NA	Intergenic	ORR1F|LTR|ERVL-MaLR	-10938	NM_177787	277898	Mm.269823	NM_177787	ENSMUSG00000044378	Slc15a5	9830102E05Rik	solute carrier family 15, member 5	protein-coding	8.677	1.253	0.367	5.386	4.385	2.187	10.884	13.633	4.891	5.967	4.340	2.126	10.958	12.400	nan	14.625	10.955	7.491	nan	1.200	0.748	1.033	0.932	0.786	nan
15234	chr9	66724679	66726640	+	0	NA	intron (NM_001306148, intron 2 of 9)	intron (NM_001306148, intron 2 of 9)	11973	NM_001306148	76459	Mm.277921	NM_178396	ENSMUSG00000032373	Car12	2310047E01Rik|AI314958|CA-XII|Ca12	carbonic anhydrase 12	protein-coding	3.946	2.538	2.370	2.118	1.707	1.448	1.931	1.303	1.994	2.686	3.147	0.879	1.187	2.190	nan	2.799	1.926	2.028	nan	1.282	1.053	0.572	0.508	0.196	2.379
10205	chr4	81707925	81715058	+	0	NA	Intergenic	Intergenic	-224478	NR_030570	100124446		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA	0.630	0.672	0.587	0.520	0.360	0.155	0.518	0.786	0.618	0.765	0.740	1.329	0.726	0.501	0.485	0.692	0.702	0.604	nan	6.898	4.872	18.663	0.712	0.488	0.496
5333	chr15	75427121	75429880	+	0	NA	intron (NR_108041, intron 3 of 3)	B4A|SINE|B4	3329	NR_108041	105892	Mm.38909	NM_001039720	ENSMUSG00000053168	9030619P08Rik	-	lymphocyte antigen 6 complex pseudogene	pseudo	4.631	1.600	0.340	8.925	1.360	0.514	1.808	1.691	2.377	2.835	nan	0.439	1.547	2.304	2.263	3.627	nan	4.548	1.020	0.617	0.503	nan	0.320	0.414	4.589
5229	chr15	59474142	59475515	+	0	NA	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	100630	NM_001164604	68501	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	2.553	1.370	0.889	2.445	0.682	0.246	3.777	3.695	1.505	1.313	0.954	0.393	3.421	3.008	4.161	2.875	2.329	3.156	0.856	0.795	0.792	1.810	0.934	0.493	3.861
6620	chr17	43011178	43014138	+	0	NA	Intergenic	B3|SINE|B2	-3897	NM_178589	94185	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	7.300	9.992	5.165	5.682	6.731	4.557	11.602	6.709	5.252	9.940	4.750	5.328	7.414	10.605	8.172	8.254	6.641	6.753	5.806	4.122	4.122	4.538	6.524	5.710	12.561
13909	chr7	150182766	150184152	+	0	NA	Intergenic	Intergenic	4868624	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	nan	nan	0.376	nan	1.370	0.548	5.014	2.981	nan	3.238	2.703	0.497	3.821	3.890	3.392	3.655	3.407	4.004	0.427	0.372	0.376	0.656	nan	0.315	4.908
2178	chr11	52146654	52147647	+	0	NA	Intergenic	ID_B1|SINE|B4	-1622	NM_207227	211472	Mm.377235	NM_207227	ENSMUSG00000062204	Olfr1373	GA_x6K02T2QP88-3283154-3284089	olfactory receptor 1373	protein-coding	0.784	1.849	0.440	1.747	0.480	0.013	2.767	2.849	3.114	1.976	6.398	3.168	3.627	3.529	4.295	2.818	0.426	2.112	4.079	1.432	1.316	5.596	nan	0.639	0.932
8050	chr2	27280351	27282340	+	0	NA	intron (NR_133905, intron 18 of 29)	intron (NR_133905, intron 18 of 29)	-34042	NM_138665	192166	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	7.054	15.499	5.550	11.572	2.603	2.135	6.053	10.343	3.843	12.722	4.720	3.112	6.602	5.816	7.943	9.660	6.452	8.415	5.009	1.844	4.303	6.934	2.505	5.970	19.472
7889	chr19	55670091	55671862	+	0	NA	intron (NR_045318, intron 2 of 3)	intron (NR_045318, intron 2 of 3)	31228	NR_045318	77594	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	4.590	nan	0.366	0.655	0.766	0.778	7.449	3.850	1.767	1.465	0.333	0.944	2.214	1.945	2.965	3.392	4.351	2.284	0.382	0.321	0.324	0.510	1.351	0.686	6.954
290	chr1	73008526	73010486	+	0	NA	Intergenic	L1Md_F2|LINE|L1	6393	NM_009407	21958	Mm.425024	NM_009407	ENSMUSG00000026182	Tnp1	Stp-1|TP1|Tp-1	transition protein 1	protein-coding	6.487	0.915	0.987	1.693	2.102	0.877	4.040	4.283	1.969	2.940	0.645	0.783	4.403	3.078	4.833	7.969	6.717	nan	6.527	4.026	2.845	4.386	6.481	4.980	5.094
8294	chr2	61416040	61418739	+	0	NA	Intergenic	RMER15|LTR|ERVL	-161197	NM_011529	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	2.340	8.473	5.395	2.330	0.952	0.332	0.833	nan	2.075	1.897	0.769	0.835	0.764	1.172	1.585	1.603	2.213	1.912	1.010	1.180	0.544	0.539	0.270	0.416	0.962
14413	chr8	87242699	87324783	+	0	NA	Intergenic	ORR1D1|LTR|ERVL-MaLR	-83891	NR_040697	100038706	Mm.334690	NR_040697	ENSMUSG00000099207	Gm10637	ENSMUSG00000074176	predicted gene 10637	ncRNA	2.857	1.298	0.591	3.522	1.666	0.928	2.522	3.220	nan	2.904	1.227	0.956	2.952	3.078	2.940	4.057	3.021	2.952	nan	4.266	3.498	9.793	1.627	1.335	5.108
14426	chr8	88015775	88016927	+	0	NA	Intergenic	Intergenic	-56756	NM_033327	94187	Mm.23452	NM_033327	ENSMUSG00000045333	Zfp423	Ebfaz|Roaz|Zfp104|Znf423|ataxia1|mKIAA0760|nur12	zinc finger protein 423	protein-coding	4.968	4.128	1.184	4.699	1.843	1.333	2.613	7.022	nan	5.079	2.347	1.568	4.079	5.217	6.501	8.773	6.003	5.082	3.002	1.828	1.839	5.820	2.621	1.840	9.608
10312	chr4	100595111	100597436	+	0	NA	Intergenic	Intergenic	117406	NM_001033773	381534	Mm.318133	NM_001033773	ENSMUSG00000069733	Ube2u	-	ubiquitin-conjugating enzyme E2U (putative)	protein-coding	4.748	nan	0.256	2.731	2.137	1.379	3.378	1.459	nan	3.409	1.024	0.568	2.722	2.886	nan	3.222	3.002	2.525	0.746	1.010	0.586	nan	0.774	0.628	4.932
712	chr1	140064389	140073169	+	0	NA	Intergenic	RMER16-int|LTR|ERVK	114632	NM_009888	12628	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	4.294	10.924	6.528	nan	1.184	0.607	1.068	1.380	2.270	2.119	1.295	0.851	2.219	nan	1.710	nan	2.454	3.023	0.796	1.181	0.689	0.509	0.345	0.272	nan
5706	chr15	101795427	101799580	+	0	NA	intron (NM_212485, intron 5 of 8)	intron (NM_212485, intron 5 of 8)	4829	NM_212485	223915	Mm.291498	NM_212485	ENSMUSG00000063661	Krt73	BC067067|Kb36	keratin 73	protein-coding	4.573	0.646	0.225	3.278	1.751	1.365	4.615	5.019	1.798	1.962	3.071	2.334	6.275	2.423	5.740	5.876	5.729	4.950	0.917	0.618	0.765	1.748	0.542	0.330	7.033
6339	chr17	12982713	12989221	+	0	NA	intron (NM_175394, intron 1 of 5)	intron (NM_175394, intron 1 of 5)	6292	NM_001113533	60532	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	6.061	2.187	0.762	4.441	3.442	2.273	4.907	5.104	4.330	4.329	6.225	3.307	3.813	5.489	4.652	6.335	4.375	6.337	nan	2.488	1.918	4.421	3.081	2.378	6.860
2560	chr11	85086424	85094828	+	0	NA	intron (NM_001029934, intron 2 of 33)	L1_Mur2|LINE|L1	49329	NM_001029934	237898	Mm.178524	NM_001029934	ENSMUSG00000000804	Usp32	2900074J03Rik|6430526O11Rik|AW045245	ubiquitin specific peptidase 32	protein-coding	4.281	0.623	0.463	nan	5.558	4.061	4.619	4.372	4.497	4.961	5.239	2.200	5.593	6.898	4.325	3.474	3.266	3.541	0.755	0.764	0.605	nan	1.129	0.605	nan
9861	chr3	146066845	146072606	+	0	NA	intron (NM_172864, intron 11 of 22)	ID_B1|SINE|B4	38311	NM_172864	242253	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik	WD repeat domain 63	protein-coding	3.708	1.913	0.701	5.327	3.250	1.975	5.886	2.907	4.719	7.624	2.506	1.545	9.171	9.482	6.664	8.280	3.612	7.266	5.383	2.240	1.443	5.659	3.663	2.425	9.006
8637	chr2	126961790	126965709	+	0	NA	Intergenic	RMER10A|LTR|ERVL	-30514	NM_023220	66552	Mm.269928	NM_023220	ENSMUSG00000027366	Sppl2a	2010106G01Rik|C130089K23Rik	signal peptide peptidase like 2A	protein-coding	7.048	1.475	1.321	1.983	1.119	0.892	3.001	4.611	2.878	1.913	8.497	3.179	2.736	3.099	2.301	3.876	3.849	2.156	3.168	1.712	1.778	1.921	1.311	0.911	5.591
15866	chrX	162981404	162984125	+	0	NA	intron (NM_001168571, intron 14 of 16)	IAPEz-int|LTR|ERVK	-18165	NM_009789	12309	Mm.6891	NM_009789	ENSMUSG00000040808	S100g	AU042539|CABP1|CaBP-D9K|Cabp9k|Calb3	S100 calcium binding protein G	protein-coding	2.106	0.191	0.249	1.318	1.872	0.873	1.922	0.811	2.898	3.135	0.465	0.342	2.212	2.866	2.413	3.176	1.515	2.804	0.564	0.360	0.317	0.287	0.235	0.069	1.849
5764	chr16	5130566	5137641	+	0	NA	Intergenic	Intergenic	-1622	NM_008909	19041	Mm.266875	NM_008909	ENSMUSG00000039457	Ppl	AW553870	periplakin	protein-coding	7.123	1.106	0.407	6.620	3.336	1.446	8.185	10.907	4.201	6.055	6.323	3.150	9.046	11.657	8.872	12.227	4.903	9.167	2.608	0.908	0.928	4.432	2.027	1.453	12.846
13349	chr7	86490253	86494453	+	0	NA	Intergenic	Intergenic	-2804	NM_001011751	257905	Mm.377294	NM_001011751	ENSMUSG00000062878	Olfr298	MOR219-4	olfactory receptor 298	protein-coding	1.737	4.450	2.434	2.038	2.780	2.102	3.051	5.537	nan	2.117	1.362	1.384	2.454	3.251	3.507	1.813	nan	3.295	0.811	0.959	0.494	nan	0.719	0.520	nan
11370	chr5	77538271	77541122	+	0	NA	Intergenic	L1Md_A|LINE|L1	74208	NR_131050	69370	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	2.374	0.735	0.543	4.838	1.143	0.836	1.787	1.807	1.726	1.239	2.543	1.355	2.539	2.862	1.840	nan	1.904	4.109	0.741	0.864	0.831	1.568	0.414	0.305	1.411
12683	chr6	122519638	122523966	+	0	NA	intron (NM_001347434, intron 5 of 8)	intron (NM_001347434, intron 5 of 8)	8126	NM_015776	50530	Mm.41931	NM_015776	ENSMUSG00000030116	Mfap5	MAGP-2|MFAP-5	microfibrillar associated protein 5	protein-coding	3.663	10.576	9.028	2.210	1.957	1.139	0.762	1.331	2.063	1.982	1.930	1.867	0.774	nan	0.922	1.631	1.408	1.856	0.924	1.623	1.153	0.482	nan	0.674	1.171
10330	chr4	102853923	102855923	+	0	NA	intron (NM_001285852, intron 2 of 25)	G-rich|Low_complexity|Low_complexity	94788	NM_001285859	73094	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	2.529	nan	0.903	0.985	1.462	1.106	5.610	2.148	nan	1.613	0.766	1.131	3.242	4.439	2.737	3.562	1.400	2.313	0.946	1.248	1.067	nan	1.370	0.831	2.912
10295	chr4	97669134	97673117	+	0	NA	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-86534	NR_015513	319865	Mm.373807	NM_177023		E130114P18Rik	-	RIKEN cDNA E130114P18 gene	ncRNA	5.996	nan	0.609	4.731	2.307	0.814	4.114	5.571	5.771	7.054	6.571	3.558	6.769	6.217	6.033	7.105	3.699	7.057	1.840	0.951	0.708	nan	0.670	0.321	7.510
7948	chr2	6080553	6087881	+	0	NA	Intergenic	B2_Mm2|SINE|B2	45968	NM_144883	227545	Mm.133542	NM_144883	ENSMUSG00000045319	Proser2	5430407P10Rik|AU067770	proline and serine rich 2	protein-coding	6.500	0.864	0.515	2.598	4.141	2.235	6.404	9.176	4.187	4.134	5.647	3.016	8.305	7.959	6.586	9.024	5.313	5.898	0.789	0.773	0.628	0.684	0.724	0.448	6.595
4529	chr14	22835921	22837091	+	0	NA	intron (NM_028275, intron 6 of 6)	intron (NM_028275, intron 6 of 6)	258065	NR_033550	791307	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	ENSMUSG00000068680	predicted gene 10248	ncRNA	1.296	0.575	0.586	2.850	1.542	0.396	1.019	1.194	1.539	1.753	0.384	0.457	2.273	3.958	1.550	2.521	0.766	2.675	0.633	0.280	0.209	nan	0.832	0.230	2.959
8131	chr2	32216025	32219620	+	0	NA	intron (NM_172661, intron 18 of 29)	intron (NM_172661, intron 18 of 29)	-18861	NM_145145	99011	Mm.31192	NM_145145	ENSMUSG00000039254	Pomt1	AI505244	protein-O-mannosyltransferase 1	protein-coding	8.325	7.152	3.583	8.069	5.804	4.145	7.288	10.652	nan	5.847	3.986	3.769	7.323	10.210	7.134	9.115	9.445	6.520	3.990	4.100	4.059	4.945	4.962	4.956	11.606
6040	chr16	34572961	34574341	+	0	NA	Intergenic	Intergenic	-59624	NM_177357	545156	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	3.130	2.068	0.784	7.047	2.921	2.459	4.188	2.101	3.138	12.030	1.352	1.638	4.035	4.415	3.158	3.331	1.003	4.271	5.027	1.654	3.676	3.897	4.137	8.495	4.869
8480	chr2	102246624	102248389	+	0	NA	Intergenic	Lx7|LINE|L1	-61046	NM_001290784	241576	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	4.656	1.066	1.101	1.382	2.020	1.112	6.684	9.244	3.168	2.450	3.043	0.886	5.818	2.712	6.791	6.985	6.279	3.005	2.161	0.744	0.764	1.771	0.460	0.111	4.162
2593	chr11	87275035	87278715	+	0	NA	intron (NR_106195, intron 6 of 8)	intron (NR_106195, intron 6 of 8)	82119	NM_177167	320472	Mm.341988	NM_177167	ENSMUSG00000046442	Ppm1e	AW049266|B930008A12Rik|POPX1|PP2CH|mKIAA1072	protein phosphatase 1E (PP2C domain containing)	protein-coding	nan	2.877	2.653	nan	4.344	4.086	2.689	2.974	2.846	2.705	1.591	1.895	2.874	4.254	2.761	2.955	3.989	2.933	2.326	2.209	3.069	nan	2.952	3.733	nan
14969	chr9	37333198	37339804	+	0	NA	intron (NM_001081429, intron 4 of 15)	IAPEz-int|LTR|ERVK	11891	NM_001081429	245902	Mm.390150	NM_001081429	ENSMUSG00000034303	Ccdc15	A630039F14Rik|D030074L19	coiled-coil domain containing 15	protein-coding	8.683	1.582	0.511	9.766	2.163	0.863	5.865	7.668	4.533	6.811	1.586	0.720	6.338	8.406	7.194	9.431	5.131	10.254	nan	0.972	0.650	1.370	1.328	1.102	15.023
10540	chr4	128409958	128415997	+	0	NA	intron (NM_001281955, intron 23 of 70)	L1MB7|LINE|L1	151933	NR_130980	75242	Mm.488254	NR_130980		Hmgb4os	4930546G22Rik	high-mobility group box 4, opposite strand	ncRNA	4.069	6.557	2.420	6.007	4.817	2.582	4.151	5.126	4.556	5.147	6.290	3.599	4.746	6.507	6.011	7.035	2.468	6.721	4.862	2.994	2.461	5.746	3.418	2.772	6.169
6070	chr16	38755949	38757399	+	0	NA	intron (NM_001285793, intron 3 of 6)	intron (NM_001285793, intron 3 of 6)	14415	NM_001285793	56375	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	6.927	0.959	0.725	2.535	3.696	1.923	1.418	2.171	2.342	3.007	0.625	0.647	1.500	4.211	2.549	3.064	1.924	3.521	0.640	0.855	0.819	1.074	0.797	0.467	3.871
8943	chr2	163413588	163417882	+	0	NA	intron (NM_025699, intron 1 of 3)	intron (NM_025699, intron 1 of 3)	3735	NM_025699	66680	Mm.25119	NM_025699	ENSMUSG00000035399	Oser1	3230401D17Rik|AI256769|Perit1	oxidative stress responsive serine rich 1	protein-coding	3.292	1.335	0.870	2.171	2.291	1.438	6.242	6.767	2.746	2.488	0.684	0.634	5.628	7.243	4.092	5.065	5.279	3.757	nan	0.890	1.347	0.791	0.535	0.603	2.865
13585	chr7	117426259	117429080	+	0	NA	intron (NM_175645, intron 1 of 11)	intron (NM_175645, intron 1 of 11)	46690	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	3.755	7.982	3.671	2.778	3.973	2.256	2.290	4.910	3.151	4.697	3.642	3.784	4.273	4.709	4.027	3.340	2.940	3.063	0.962	0.911	0.694	0.787	0.544	0.429	3.498
5670	chr15	100221386	100223348	+	0	NA	Intergenic	Intergenic	-5492	NM_007497	11908	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	2.338	0.528	0.211	1.164	0.859	0.564	2.649	3.276	1.445	2.896	0.170	0.255	1.801	3.068	1.932	4.267	1.483	3.850	0.626	0.573	0.428	0.516	0.428	0.246	1.108
10608	chr4	131757780	131759067	+	0	NA	Intergenic	MTB|LTR|ERVL-MaLR	79855	NM_011214	19273	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding	2.080	1.009	0.883	1.783	5.302	5.300	1.759	2.386	3.032	3.055	0.716	1.094	2.155	3.445	nan	2.194	1.867	2.873	1.698	2.289	3.183	1.024	1.816	2.485	1.482
2920	chr11	107249051	107251245	+	0	NA	intron (NM_145823, intron 6 of 9)	intron (NM_145823, intron 6 of 9)	-60767	NM_001161329	68979	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.804	9.957	7.461	nan	0.609	0.500	0.348	0.661	nan	nan	0.630	0.582	0.235	nan	0.587	0.638	0.581	nan	1.264	0.754	1.287	nan	1.166	1.397	0.430
14368	chr8	81686476	81687676	+	0	NA	intron (NM_001297591, intron 2 of 24)	intron (NM_001297591, intron 2 of 24)	344514	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	3.573	1.278	1.043	2.029	4.858	2.725	3.601	4.781	2.363	2.421	2.346	2.752	3.262	3.585	3.905	3.474	2.378	4.036	1.126	1.367	1.627	nan	0.829	1.038	2.253
6305	chr17	5931989	5936816	+	0	NA	Intergenic	Intergenic	-6878	NM_001113353	20975	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	2.678	7.169	4.554	2.840	2.449	2.047	3.278	2.657	2.110	2.524	1.473	0.894	2.869	4.365	2.582	nan	3.081	2.195	nan	1.073	1.598	2.068	1.602	2.000	3.324
9003	chr2	166475468	166479047	+	0	NA	Intergenic	Intergenic	29806	NR_015558	319684	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	4.999	5.365	1.829	3.971	1.917	1.408	2.660	7.025	3.686	3.981	1.545	1.041	3.718	3.823	4.264	4.049	2.257	4.016	7.219	2.640	3.442	3.808	5.259	5.441	nan
13607	chr7	118952779	118954853	+	0	NA	intron (NM_001081446, intron 8 of 8)	intron (NM_001081446, intron 8 of 8)	41395	NM_022420	64297	Mm.103439	NM_022420	ENSMUSG00000008734	Gprc5b	AW125761|Raig2	G protein-coupled receptor, family C, group 5, member B	protein-coding	2.872	0.891	0.487	1.005	1.333	0.296	4.974	2.480	1.064	1.308	1.254	0.740	2.874	4.629	3.455	2.586	4.521	1.611	0.730	0.698	0.666	0.588	0.853	0.523	2.630
9258	chr3	41178197	41181333	+	0	NA	Intergenic	B4|SINE|B4	-96719	NM_027558	70804	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	5.803	0.943	0.621	2.363	7.426	3.834	8.411	8.353	nan	6.190	5.140	3.566	7.496	6.044	7.034	5.156	3.555	5.078	nan	0.981	0.938	nan	1.217	0.495	6.803
2038	chr11	23669816	23671593	+	0	NA	intron (NM_028304, intron 2 of 17)	intron (NM_028304, intron 2 of 17)	4728	NM_028304	74467	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	8.800	18.634	5.031	13.649	5.325	1.674	5.597	7.488	7.201	15.154	8.258	4.138	4.908	8.869	8.866	11.076	5.047	9.664	2.034	1.194	1.370	3.688	1.417	1.601	12.182
12217	chr6	49321622	49324893	+	0	NA	intron (NM_001311112, intron 1 of 3)	URR1A|DNA|hAT-Charlie	3983	NM_001311112	57895	Mm.32416	NM_175098	ENSMUSG00000050786	Ccdc126	6330407D12Rik|AA675040|AI465320|AL022711	coiled-coil domain containing 126	protein-coding	3.280	0.815	0.562	3.655	4.588	2.866	4.403	2.809	2.970	2.947	1.127	1.154	4.145	5.880	4.358	6.348	4.574	nan	2.267	1.749	1.087	1.904	3.037	2.039	2.507
11608	chr5	115956741	115961345	+	0	NA	intron (NM_007708, intron 22 of 46)	intron (NM_007708, intron 22 of 46)	65385	NM_031869	19079	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	5.451	4.832	1.473	9.551	3.924	1.921	4.971	4.868	4.085	6.766	5.249	2.967	3.791	6.604	5.840	5.703	2.820	6.073	nan	nan	1.727	1.675	nan	1.187	8.140
1159	chr10	20263284	20273713	+	0	NA	intron (NM_001198635, intron 10 of 17)	intron (NM_001198635, intron 10 of 17)	29190	NR_105840	102466647		NR_105840	ENSMUSG00000098887	Mir6413	Gm27432|mmu-mir-6413	microRNA 6413	ncRNA	5.914	0.785	0.574	4.923	4.777	2.397	4.339	5.128	nan	7.844	0.916	0.859	5.668	7.846	8.034	8.812	6.820	7.180	0.971	0.858	0.705	1.461	0.659	0.522	nan
4512	chr14	21568524	21569701	+	0	NA	intron (NM_017479, intron 2 of 16)	intron (NM_017479, intron 2 of 16)	69327	NM_017479	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	3.161	0.823		1.009	1.052	0.418	2.969	4.571	1.790	1.349	1.095	0.745	3.979	4.095	3.575	4.126	3.225	3.511	0.580	0.979	0.122	nan	0.146	0.243	3.022
8614	chr2	122646242	122647810	+	0	NA	Intergenic	L1Md_T|LINE|L1	6223	NR_030547	387165		NR_030547	ENSMUSG00000076309	Mir147	Mirn147|mmu-mir-147	microRNA 147	ncRNA	2.367	0.635	0.329	1.169	1.313	0.338	4.240	4.898	1.334	1.383	0.284	0.452	4.571	3.559	4.384	4.697	3.528	3.614	0.559	0.364	0.547	0.341	0.367	0.270	2.879
6238	chr16	93858875	93864414	+	0	NA	intron (NM_001045529, intron 10 of 16)	intron (NM_001045529, intron 10 of 16)	-22257	NM_028083	110749	Mm.274222	NM_028083	ENSMUSG00000022945	Chaf1b	2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7	chromatin assembly factor 1, subunit B (p60)	protein-coding	3.495	0.840	0.539	2.332	2.321	1.179	3.684	2.266	nan	3.379	0.772	0.689	4.945	5.022	3.894	5.994	5.689	nan	nan	0.796	0.717	0.816	0.581	0.485	3.589
3110	chr11	120286811	120288370	+	0	NA	exon (NM_198423, exon 26 of 28)	exon (NM_198423, exon 26 of 28)	54643	NM_198423	268515	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	1.309	7.530	5.936	0.603	1.016	0.943	nan	1.074	0.714	nan	0.706	0.350	0.285	0.767	0.860	1.002	1.121	nan	0.839	nan	0.609	1.206	0.796	0.345	0.719
13680	chr7	125390921	125397273	+	0	NA	Intergenic	Intergenic	25236	NM_001145759	75861	Mm.349600	NM_001145759		4930571K23Rik	AI428146	RIKEN cDNA 4930571K23 gene	protein-coding	4.133	1.120	0.825	3.822	5.988	3.737	3.851	6.433	3.940	4.637	2.492	2.691	5.239	7.925	nan	3.675	3.758	5.136	2.126	1.773	1.525	2.924	4.514	3.737	2.710
8125	chr2	32037048	32040005	+	0	NA	intron (NM_172268, intron 30 of 35)	intron (NM_172268, intron 30 of 35)	-12420	NR_106135	102466844		NR_106135	ENSMUSG00000099075	Mir7674	Gm27563|mmu-mir-7674	microRNA 7674	ncRNA	5.701	1.559	0.293	4.302	2.254	1.162	4.989	7.478	3.889	5.730	7.009	2.745	7.122	6.751	6.569	10.324	4.802	6.799	4.412	2.251	0.838	4.907	1.751	1.147	13.453
12059	chr6	14731986	14733813	+	0	NA	intron (NM_080464, intron 1 of 3)	MTA_Mm|LTR|ERVL-MaLR	22375	NM_080464	140491	Mm.209429	NM_080464	ENSMUSG00000042717	Ppp1r3a	GM|RG1|RGL	protein phosphatase 1, regulatory (inhibitor) subunit 3A	protein-coding	2.450	nan	0.141	2.526	3.386	1.868	5.105	2.179	4.543	3.244	0.466	0.434	6.465	5.288	4.696	5.859	4.407	6.133	0.724	0.662	0.401	0.466	0.378	0.193	1.766
15584	chr9	119239209	119240581	+	0	NA	non-coding (NR_045693, exon 19 of 19)	non-coding (NR_045693, exon 19 of 19)	-8203	NR_033303	109280	Mm.261557	NM_175420	ENSMUSG00000092212	Slc22a13b-ps	9330176C04Rik|Slc22a13b	solute carrier family 22 (organic cation transporter), member 13b, pseudogene	pseudo	2.378	1.052	0.438	1.495	0.812	0.492	1.912	6.169	1.679	2.120	4.318	2.074	4.361	3.176	3.167	4.774	3.087	2.772	0.775	0.795	0.534	1.408	nan	0.402	5.483
12210	chr6	48695213	48698951	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	11162	NM_153175	231931	Mm.321047	NM_153175	ENSMUSG00000047867	Gimap6	4833419H03Rik|Ian6|mFLJ00102	GTPase, IMAP family member 6	protein-coding	3.808	20.556	8.298	6.344	1.655	0.662	1.513	2.725	2.943	3.453	1.783	1.336	1.590	1.941	2.635	3.286	2.039	nan	nan	1.868	1.101	1.831	0.945	0.270	2.875
2332	chr11	66725041	66728741	+	0	NA	Intergenic	Intergenic	-185100	NM_178656	193003	Mm.440256	NM_178656	ENSMUSG00000048070	Pirt	A530088H08Rik	phosphoinositide-interacting regulator of transient receptor potential channels	protein-coding	0.489	1.004	0.377	0.342	0.331	0.163	0.407	0.655	0.585	0.428	0.157	0.748	0.391	nan	0.579	0.732	0.464	0.628	5.607	3.018	1.642	4.069	6.408	4.820	nan
10784	chr4	138701835	138703847	+	0	NA	Intergenic	Intergenic	22015	NM_001285930	212190	Mm.292226	NM_178671	ENSMUSG00000043621	Ubxn10	5730509E04Rik|A830047D02|Ubxd3	UBX domain protein 10	protein-coding	3.041	0.875	0.833	2.980	5.358	3.431	5.170	1.729	nan	4.135	2.511	2.359	1.675	5.611	2.634	2.756	1.452	2.280	0.836	0.957	1.173	0.624	nan	0.997	3.008
4644	chr14	47894971	47897542	+	0	NA	Intergenic	Intergenic	-2608	NR_045959	73961	Mm.390702	NR_045959		4930447J18Rik	4930425M13Rik	RIKEN cDNA 4930447J18 gene	ncRNA	4.986	10.722	4.570	5.923	2.595	2.993	3.671	5.417	3.464	6.073	4.426	2.527	3.751	4.793	6.518	5.951	3.230	5.439	6.753	2.874	4.098	7.067	5.050	6.369	8.378
15453	chr9	103981449	103986050	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	-18795	NM_172460	74025	Mm.479273	NM_028721	ENSMUSG00000032558	Nphp3	3632410F03Rik|AI550417|C230078J01|D330020E01Rik|pcy	nephronophthisis 3 (adolescent)	protein-coding	1.217	0.876	0.675	0.471	0.328	0.134	3.476	5.034	nan	nan	3.697	2.894	3.602	1.637	1.530	2.142	1.532	1.259	0.667	0.374	0.336	0.395	0.433	0.292	nan
6973	chr18	3506822	3510034	+	0	NA	intron (NM_026505, intron 1 of 2)	CpG	471	NM_026505	68010	Mm.284863	NM_026505	ENSMUSG00000024232	Bambi	2610003H06Rik	BMP and activin membrane-bound inhibitor	protein-coding	nan	3.488	0.887	5.594	2.884	1.681	6.100	11.871	5.893	10.151	3.411	1.733	8.320	9.556	8.418	9.154	9.041	8.434	5.607	3.496	2.818	5.427	7.450	6.614	15.227
6354	chr17	15462066	15464436	+	0	NA	Intergenic	Intergenic	35025	NM_011185	19170	Mm.32912	NM_011185	ENSMUSG00000014769	Psmb1	AA409053|C81484|Lmpc5	proteasome (prosome, macropain) subunit, beta type 1	protein-coding	3.366	1.005	0.305	2.380	1.221	0.241	5.026	4.012	1.930	2.848	4.372	2.025	3.468	5.091	4.219	3.503	2.104	4.568	1.483	0.294	0.415	1.581	0.653	0.328	7.738
1024	chr1	192655937	192659206	+	0	NA	intron (NM_144881, intron 9 of 11)	intron (NM_144881, intron 9 of 11)	113648	NM_144881	226861	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	2.784	1.850	1.175	2.105	1.370	0.381	2.277	2.345	2.665	3.021	1.375	1.145	3.949	3.609	3.510	5.937	3.649	4.138	2.597	1.505	0.645	4.031	1.454	1.175	2.449
9900	chr4	6377637	6386251	+	0	NA	intron (NM_016807, intron 4 of 8)	RLTR20A|LTR|ERVK	16264	NM_001098227	53378	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	7.249	5.821	2.496	6.693	3.339	1.997	6.624	4.811	6.045	8.824	4.105	3.702	8.056	8.241	6.950	8.745	6.554	8.547	6.129	nan	2.375	5.716	4.149	3.582	8.335
2867	chr11	105211594	105219121	+	0	NA	intron (NM_001294334, intron 6 of 19)	intron (NM_001294334, intron 6 of 19)	33830	NM_001294329	24086	Mm.126976	NM_011903	ENSMUSG00000020694	Tlk2	4933403M19Rik|PKU-alpha|PKUalpha|Tlk	tousled-like kinase 2 (Arabidopsis)	protein-coding	4.177	0.706	0.399	nan	2.104	1.301	4.910	3.953	nan	4.694	2.511	1.923	4.264	4.969	5.908	6.692	4.145	nan	1.463	1.093	1.220	nan	0.905	0.648	5.669
9434	chr3	87931304	87933459	+	0	NA	intron (NM_177663, intron 2 of 3)	intron (NM_177663, intron 2 of 3)	2067	NM_177663	229504	Mm.45744	NM_177663	ENSMUSG00000048039	Isg20l2	4930429N24|C80587	interferon stimulated exonuclease gene 20-like 2	protein-coding	3.089	1.081	0.603	2.320	6.672	4.941	4.570	2.458	2.382	2.923	1.032	0.939	3.757	5.215	2.983	3.677	4.077	3.529	nan	1.559	0.844	0.504	0.889	0.646	3.214
2871	chr11	105325736	105328422	+	0	NA	intron (NM_008626, intron 2 of 29)	(CA)n|Simple_repeat|Simple_repeat	34433	NM_008626	17534	Mm.235616	NM_008626	ENSMUSG00000020695	Mrc2	Endo180|mKIAA0709|uPARAP	mannose receptor, C type 2	protein-coding	2.910	0.785	1.164	nan	1.190	0.911	0.885	0.850	nan	nan	1.129	1.171	0.586	nan	1.041	1.281	1.018	nan	1.227	2.621	1.705	nan	1.823	1.564	1.072
12950	chr7	17607709	17613873	+	0	NA	Intergenic	ERVB4_1B-LTR_MM|LTR|ERVK	-61522	NR_002857	232919	Mm.153893	NR_002857	ENSMUSG00000108558	Psg-ps1	AV036018|Cea-6|Cea6	pregnancy specific glycoprotein pseudogene 1	pseudo	9.575	10.082	3.728	7.501	3.925	1.753	7.655	10.192	7.154	11.761	6.210	3.024	6.134	6.900	7.078	9.938	6.834	10.109	4.922	3.683	2.068	4.017	4.111	2.920	12.882
7842	chr19	47031310	47038349	+	0	NA	intron (NR_133574, intron 9 of 9)	intron (NR_133574, intron 9 of 9)	16077	NM_027654	71041	Mm.35413	NM_027654	ENSMUSG00000025050	Pcgf6	4933407A11Rik|AI604840|MBLR|Rnf134	polycomb group ring finger 6	protein-coding	3.864	4.475	1.574	nan	3.090	2.166	4.419	6.293	3.250	4.944	5.050	3.233	3.612	5.760	5.312	6.388	4.914	5.514	2.878	1.975	1.818	5.533	3.031	3.025	6.072
10333	chr4	104132213	104136321	+	0	NA	Intergenic	Intergenic	-233271	NR_104385	13131	Mm.289682	NM_010014	ENSMUSG00000028519	Dab1	AI956902|C630028C02Rik|scm|scr|scrambler|yot	disabled 1	protein-coding	0.344	0.388	0.413	0.298	0.139	0.031	0.250	nan	0.463	0.287	0.264	0.129	0.135	0.227	0.116	0.381	0.312	nan	3.812	4.837	2.815	2.343	3.723	2.922	0.410
8269	chr2	59507133	59520236	+	0	NA	Intergenic	Intergenic	29031	NM_029723	76747	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	7.836	1.076	0.705	5.975	5.226	2.639	9.352	nan	5.577	7.575	6.144	2.954	10.804	11.807	8.228	11.393	8.900	8.807	1.467	1.514	1.198	1.968	1.332	0.860	9.584
13	chr1	9584347	9587175	+	0	NA	intron (NR_015470, intron 3 of 4)	Lx9|LINE|L1	-15506	NM_178399	76982	Mm.491098	NM_178399	ENSMUSG00000067879	3110035E14Rik	AI415019|AV164974|R75066	RIKEN cDNA 3110035E14 gene	protein-coding	0.909	8.077	6.911	0.451	0.955	0.480	0.703	0.426	0.650	0.606	0.321	0.338	0.232	0.479	0.352	0.510	1.131	0.830	0.929	1.976	1.650	0.309	1.925	2.337	0.420
3953	chr13	34369160	34370917	+	0	NA	Intergenic	Intergenic	-24856	NM_001033167	73102	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	4.298	nan	0.888	3.386	4.456	3.982	4.027	4.979	3.295	2.878	2.509	2.659	2.934	6.298	3.783	4.360	2.621	3.486	1.167	1.221	1.355	1.288	1.455	1.468	3.524
11422	chr5	91465976	91468342	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	-50541	NM_145562	231440	Mm.5002	NM_145562	ENSMUSG00000034981	Parm1	2210012L08Rik|9130213B05Rik|W91666	prostate androgen-regulated mucin-like protein 1	protein-coding	4.663	0.429	0.731	2.243	2.181	1.142	3.769	4.723	5.141	5.339	2.773	3.379	4.020	5.459	6.694	4.985	2.830	5.114	0.746	0.379	0.449	0.811	0.625	0.404	3.811
13828	chr7	139911467	139924440	+	0	NA	intron (NM_177261, intron 9 of 30)	intron (NM_177261, intron 9 of 30)	23257	NM_177261	76484	Mm.44442	NM_177261	ENSMUSG00000066129	Kndc1	2410012C07Rik|B830014K08Rik|VKIND|very-kind	kinase non-catalytic C-lobe domain (KIND) containing 1	protein-coding	6.406	4.191	1.280	5.413	2.781	1.865	4.741	4.856	nan	5.983	4.024	1.998	5.076	6.352	5.373	7.544	5.081	8.598	2.175	1.096	1.110	2.300	0.684	0.479	9.670
9811	chr3	132850267	132855012	+	0	NA	intron (NR_102297, intron 1 of 3)	intron (NR_102297, intron 1 of 3)	25957	NR_102297	101243624	Mm.306256	NR_102297	ENSMUSG00000106230	Gm29811	-	predicted gene, 29811	ncRNA	3.601	0.560	0.311	2.757	3.140	2.545	4.364	3.010	3.824	3.627	0.903	0.695	7.620	4.604	4.351	nan	4.945	5.944	3.502	1.287	1.102	1.354	3.134	2.305	3.372
7942	chr2	5578172	5579658	+	0	NA	intron (NM_001290374, intron 1 of 9)	intron (NM_001290374, intron 1 of 9)	97131	NM_001290376	227541	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	4.010	1.084	0.351	0.755	1.292	0.994	4.111	3.427	1.122	1.810	0.362	0.470	3.740	4.546	3.692	2.586	4.523	1.882	2.081	0.907	0.577	1.111	1.470	1.093	4.203
14894	chr9	21171390	21173671	+	0	NA	intron (NR_106127, intron 2 of 3)	L2b|LINE|L2	6816	NM_183408	18577	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	4.758	10.688	4.360	5.907	3.688	3.435	4.548	4.682	3.001	5.573	3.790	1.889	3.161	5.163	5.242	7.141	4.129	3.441	4.872	4.101	4.624	5.482	5.405	6.363	8.664
7599	chr19	16025158	16027236	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	41122	NR_045355	100502653	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	5.667	1.032	0.795	2.117	2.343	1.747	6.441	5.163	3.730	3.152	2.845	2.228	3.380	4.518	4.633	6.115	7.053	6.782	0.704	0.662	0.404	0.593	1.262	0.832	6.299
1514	chr10	80747171	80754871	+	0	NA	Intergenic	B4A|SINE|B4	-4185	NM_199322	208266	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	8.164	2.765	1.297	nan	2.435	1.530	7.297	7.868	3.906	5.006	4.407	4.047	6.070	8.952	7.766	7.544	7.183	6.549	nan	1.991	1.695	3.620	2.925	2.351	11.358
15684	chrX	12921515	12924991	+	0	NA	Intergenic	Intergenic	-13620	NM_001272033	245350	Mm.302695	NM_001272033		AA414768	OTTMUSG00000017000	expressed sequence AA414768	protein-coding	6.016	3.473	1.678	4.076	3.633	2.083	6.015	5.243	2.830	3.870	3.359	1.089	4.085	7.458	5.203	5.355	4.653	3.923	1.905	3.351	2.232	3.298	2.132	1.629	6.143
4906	chr14	87813831	87819006	+	0	NA	Intergenic	L1Md_A|LINE|L1	399835	NM_001253755	219249	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	8.234	6.639	1.860	8.910	4.374	2.824	6.495	7.412	6.935	14.588	4.841	3.922	6.811	9.799	9.665	9.580	4.619	11.102	3.401	1.704	2.059	3.067	2.211	3.502	13.116
1647	chr10	95104734	95108239	+	0	NA	Intergenic	Intergenic	39339	NR_131146	628062		NR_131146		Gm29684	-	predicted gene, 29684	ncRNA	6.527	1.020	0.941	2.881	8.415	7.521	3.975	6.199	5.334	5.667	nan	4.029	6.653	7.085	5.901	5.309	5.502	4.698	nan	0.946	0.798	nan	0.821	0.852	4.377
13978	chr8	8978528	8980373	+	0	NA	Intergenic	Intergenic	152838	NR_045854	71249	Mm.158635	NR_045854	ENSMUSG00000108848	4933430N04Rik	-	RIKEN cDNA 4933430N04 gene	ncRNA	1.564	0.559	0.446	1.780	0.815	0.150	3.137	3.248	2.137	1.773	0.361	0.163	7.130	3.942	5.574	5.824	3.818	4.242	0.703	0.397	0.194	0.504	0.225	0.026	1.520
9844	chr3	141992806	141996697	+	0	NA	intron (NM_001277217, intron 1 of 11)	intron (NM_001277217, intron 1 of 11)	-12487	NM_007560	12167	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	3.972	nan	0.487	1.226	2.277	1.597	6.601	4.333	3.480	2.237	2.978	1.338	5.754	4.955	4.651	3.664	4.648	4.719	0.692	0.699	0.439	0.661	0.382	0.346	2.590
9192	chr3	27760379	27762865	+	0	NA	Intergenic	Intergenic	-51183	NM_173182	72007	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	9.167	1.758	1.111	5.418	6.243	2.879	6.740	7.306	4.727	5.819	7.106	3.482	7.650	11.390	6.902	8.165	5.290	7.970	4.316	3.165	1.882	5.767	4.277	2.537	11.134
597	chr1	133011870	133016249	+	0	NA	intron (NM_001302801, intron 2 of 10)	intron (NM_001302801, intron 2 of 10)	11357	NR_126506	17248	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	2.699	0.816	0.339	nan	3.366	1.755	2.284	1.960	2.159	2.848	0.885	1.471	3.563	nan	3.552	nan	3.680	3.565	0.761	0.705	0.518	0.536	0.683	0.636	nan
11393	chr5	89092288	89094137	+	0	NA	intron (NM_001197147, intron 7 of 25)	intron (NM_001197147, intron 7 of 25)	205952	NM_018760	54403	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	3.842	0.638	0.479	2.108	4.099	2.630	6.248	3.082	3.695	4.697	1.162	1.130	3.799	6.880	4.255	4.203	3.812	3.675	0.911	0.908	0.410	0.782	0.787	0.515	2.630
4372	chr13	105379445	105381643	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-63149	NM_008308	15550	Mm.4716	NM_008308	ENSMUSG00000021721	Htr1a	Gpcr18	5-hydroxytryptamine (serotonin) receptor 1A	protein-coding	2.249	nan	0.303	1.059	0.818	0.388	3.432	2.811	nan	3.071	0.353	0.181	2.931	4.531	5.817	7.788	4.454	1.837	1.243	0.974	0.813	nan	0.856	0.480	6.458
15797	chrX	103299528	103300922	+	0	NA	Intergenic	Intergenic	-21173	NM_007674	12592	Mm.4353	NM_007674	ENSMUSG00000031326	Cdx4	Cdx-3|Cdx-4|Cdx3	caudal type homeobox 4	protein-coding	2.671	0.373	0.468	1.068	1.350	0.702	1.125	3.050	2.749	2.979	0.482	0.928	2.305	3.436	1.944	2.994	2.603	2.536	0.662	0.808	0.264	0.625	0.643	0.461	1.795
14112	chr8	28274259	28290741	+	0	NA	Intergenic	Intergenic	-197647	NR_033590	666422	Mm.484413	NR_033590	ENSMUSG00000110372	Gm8096	EG666422	3-phosphoglycerate dehydrogenase pseudogene	pseudo	6.657	nan	0.831	4.943	6.312	4.635	2.954	6.847	4.006	4.916	4.372	3.064	5.214	6.715	5.219	6.601	5.878	7.088	1.716	1.483	1.453	nan	1.860	1.889	7.153
11451	chr5	93389377	93392724	+	0	NA	Intergenic	Intergenic	123477	NM_007635	12452	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	4.116	0.737	0.160	5.154	2.139	1.469	3.743	4.545	4.152	4.602	5.800	2.916	4.644	6.560	7.774	6.002	1.913	6.184	0.657	0.491	0.392	0.739	0.320	0.254	6.951
11968	chr5	149347583	149349720	+	0	NA	Intergenic	Intergenic	-63155	NM_027519	70717	Mm.252139	NM_027519	ENSMUSG00000029659	Medag	6330406I15Rik|Awms3|MEDA-4|Meda4|mAWMS3	mesenteric estrogen dependent adipogenesis	protein-coding	4.265	0.942	0.883	2.836	3.338	3.367	4.463	3.188	3.294	3.531	1.474	1.416	4.085	4.141	3.575	3.700	3.183	3.719	1.069	0.959	0.990	0.745	1.304	1.153	nan
6603	chr17	35948136	35953920	+	0	NA	intron (NR_028278, intron 3 of 5)	B1F|SINE|Alu	3874	NR_028278	667766	Mm.29385	NR_028278		Gm8801	-	protein phosphatase 1, regulatory subunit 10 pseudogene	pseudo	8.230	2.456	1.097	7.887	6.681	4.037	7.702	10.316	5.617	6.371	6.321	6.044	7.198	10.698	6.710	7.272	5.114	7.558	1.722	1.879	2.097	3.320	0.965	0.784	7.549
8834	chr2	153381422	153388178	+	0	NA	intron (NM_001039939, intron 3 of 11)	intron (NM_001039939, intron 3 of 11)	38661	NM_001039939	228790	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	nan	2.084	1.029	1.152	0.420	0.338	0.696	0.798	nan	nan	0.411	0.268	nan	nan	0.694	1.011	0.618	nan	nan	4.050	3.793	6.822	3.838	3.531	nan
15748	chrX	71494114	71496303	+	0	NA	Intergenic	Intergenic	-2359	NM_001199349	171486	Mm.283879	NM_138309	ENSMUSG00000035776	Cd99l2	AW548191|Mic2l1|Xap89	CD99 antigen-like 2	protein-coding	4.350	5.080	1.510	3.973	3.263	1.936	3.371	4.931	2.887	3.674	2.891	1.270	2.873	4.884	3.932	5.512	2.899	4.378	2.470	2.109	2.179	2.836	2.324	1.611	6.148
12607	chr6	114803911	114817624	+	0	NA	intron (NM_001253718, intron 19 of 19)	B4|SINE|B4	110985	NM_177683	232334	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	2.802	1.499	0.428	3.924	2.001	1.019	2.746	2.467	2.854	3.784	2.236	0.905	2.141	3.120	3.407	5.993	2.310	3.910	0.886	0.590	0.445	1.114	nan	0.356	5.344
7013	chr18	10239826	10241010	+	0	NA	Intergenic	RMER19B|LTR|ERVK	-58626	NM_009071	19877	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	3.076	0.614	0.568	2.475	1.866	1.922	2.034	2.310	3.454	3.271	0.531	0.874	5.394	4.130	2.282	3.362	3.135	4.367	4.748	2.131	2.924	3.342	4.410	5.956	3.191
4867	chr14	76993283	77000827	+	0	NA	Intergenic	B3|SINE|B2	39562	NM_172488	210808	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase (multicopper oxidoreductase) domain containing 1	protein-coding	3.304	0.962	0.608	2.747	3.168	2.482	8.133	6.544	3.699	4.203	2.368	3.168	5.182	5.423	6.196	6.836	4.005	4.257	5.421	5.012	4.546	4.420	7.647	6.649	5.273
242	chr1	64041096	64043015	+	0	NA	TTS (NR_105864)	TTS (NR_105864)	446	NR_105864	102466760		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	7.666	1.348	0.483	2.331	0.932	0.878	5.402	5.145	2.052	1.886	1.180	2.219	3.970	3.348	4.647	3.602	2.275	3.888	1.289	0.987	0.494	0.790	0.612	0.200	3.153
11116	chr5	31796753	31797788	+	0	NA	intron (NM_144541, intron 4 of 11)	RMER4B|LTR|ERVK	99220	NM_144541	107976	Mm.482126	NM_144541	ENSMUSG00000052139	Bre	6030405P19Rik|AI429776|B830038C02Rik	brain and reproductive organ-expressed protein	protein-coding	3.955	6.165	1.789	3.606	1.218	0.353	4.238	2.198	2.289	2.701	2.426	1.165	4.224	4.257	4.894	5.684	3.341	5.605	2.512	1.918	1.454	3.550	3.715	1.811	6.433
32	chr1	16217381	16219414	+	0	NA	Intergenic	Intergenic	112515	NM_133832	98711	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	6.493	2.465	1.162	5.903	2.136	1.276	3.764	4.933	5.339	5.016	6.911	5.272	8.068	5.407	5.566	11.370	6.408	6.450	2.175	0.882	1.101	1.248	1.606	1.227	6.097
14463	chr8	93904081	93908882	+	0	NA	intron (NM_001113384, intron 3 of 7)	MLT1K|LTR|ERVL-MaLR	-92926	NR_026888	75809	Mm.443272	NM_029449		4930488L21Rik	4930452J22Rik	RIKEN cDNA 4930488L21 gene	ncRNA	5.134	3.256	2.453	4.137	5.502	3.167	3.928	6.771	4.245	4.604	2.295	2.396	6.216	6.647	5.525	8.301	8.371	5.419	1.651	2.932	1.569	2.291	2.726	1.784	5.983
15560	chr9	117142851	117145398	+	0	NA	intron (NM_001172122, intron 1 of 13)	intron (NM_001172122, intron 1 of 13)	108359	NM_001172123	207181	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding	8.529	0.638	0.601	4.319	3.418	2.297	4.647	3.920	5.286	6.836	5.013	2.444	5.644	5.689	4.031	6.317	5.169	4.869	0.730	1.358	1.344	0.641	nan	0.974	5.698
15440	chr9	102679307	102682545	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-36878	NM_019764	56332	Mm.21145	NM_019764	ENSMUSG00000032531	Amotl2	AW549739|C79691|Lccp|MASCOT|mKIAA0989	angiomotin-like 2	protein-coding	5.869	1.886	0.602	5.919	2.173	0.811	3.041	3.980	3.196	4.177	3.505	2.133	3.141	4.662	4.101	4.955	2.600	6.829	0.999	1.851	0.886	1.387	2.574	1.358	6.061
443	chr1	92845352	92848882	+	0	NA	intron (NM_016696, intron 1 of 8)	intron (NM_016696, intron 1 of 8)	-3261	NR_029559	387167		NR_029559	ENSMUSG00000065470	Mir149	Mirn149|mir-149|mmu-mir-149	microRNA 149	ncRNA	6.291	0.572	0.257	3.587	1.912	1.076	6.347	5.308	3.617	4.491	1.463	1.383	6.508	6.920	5.586	8.467	5.179	6.184	1.464	0.569	0.422	nan	1.184	1.159	6.152
13960	chr7	152295355	152299600	+	0	NA	Intergenic	Intergenic	6982642	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	5.353	4.705	1.223	6.455	3.727	1.447	7.521	6.893	4.256	5.807	6.352	3.780	7.526	8.694	5.755	6.098	3.266	6.457	1.195	1.140	0.699	1.121	nan	0.497	11.234
5611	chr15	97613440	97620679	+	0	NA	Intergenic	MERV1_I-int|LTR|ERV1	88763	NM_028003	71919	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	7.534	7.252	2.443	6.846	4.391	4.033	6.538	11.755	3.353	5.985	2.585	1.903	6.006	8.275	6.034	7.209	4.531	6.457	3.420	1.963	3.234	4.499	2.511	3.007	8.392
7338	chr18	65736882	65745188	+	0	NA	intron (NM_177028, intron 10 of 14)	intron (NM_177028, intron 10 of 14)	42767	NM_177028	319888	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	10.344	1.211	0.483	6.745	3.877	2.333	9.478	7.894	5.204	8.135	6.113	2.964	6.941	9.079	6.261	7.187	4.752	8.131	4.670	3.341	2.177	6.083	4.770	4.085	11.269
2234	chr11	55272147	55275334	+	0	NA	intron (NM_001029988, intron 11 of 22)	B1_Mur2|SINE|Alu	38517	NM_001029988	245827	Mm.339363	NM_001029988	ENSMUSG00000055333	Fat2	EMI2|Fath2|Gm523|mKIAA0811	FAT atypical cadherin 2	protein-coding	7.142	5.486	1.415	7.139	3.042	1.616	5.307	6.125	4.379	5.942	5.360	3.454	6.062	7.662	7.991	8.214	4.627	6.592	nan	1.348	0.677	2.686	1.232	0.744	8.716
12939	chr7	16984084	16992531	+	0	NA	Intergenic	Intergenic	-6281	NM_001101535	434130	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	ENSMUSG00000041117	coiled-coil domain containing 8	protein-coding	15.524	18.201	7.995	14.341	10.953	6.203	11.929	13.467	9.372	14.436	12.505	6.517	9.899	14.169	11.633	12.182	10.555	13.122	8.050	6.774	5.017	8.351	7.297	6.229	16.304
12622	chr6	115621507	115627641	+	0	NA	intron (NM_029780, intron 10 of 16)	intron (NM_029780, intron 10 of 16)	22636	NM_023290	67027	Mm.101316	NM_023290	ENSMUSG00000000439	Mkrn2	2610002L04Rik|C81377	makorin, ring finger protein, 2	protein-coding	8.599	9.538	2.995	8.649	5.621	4.513	9.841	11.224	6.211	9.619	5.040	3.439	9.628	10.695	10.736	11.974	7.505	9.230	4.532	2.298	1.900	4.383	nan	3.217	10.430
12444	chr6	90659988	90666831	+	0	NA	intron (NM_001134384, intron 13 of 13)	intron (NM_001134384, intron 13 of 13)	44163	NM_001037493	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	4.117	2.378	1.174	nan	2.759	1.787	2.873	4.260	2.838	4.307	1.677	1.717	2.789	3.274	3.084	6.012	3.645	nan	nan	2.768	2.143	5.325	5.260	4.302	4.770
7938	chr2	4801829	4804386	+	0	NA	TTS (NM_001190400)	TTS (NM_001190400)	-78457	NM_175400	109079	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	7.543	10.952	4.724	11.718	3.218	2.846	7.132	7.320	6.021	17.310	5.934	5.037	8.908	8.401	11.010	12.721	8.510	11.975	7.304	2.719	4.106	10.036	3.399	7.757	18.423
5252	chr15	62047489	62049678	+	0	NA	intron (NR_132746, intron 1 of 6)	intron (NR_132746, intron 1 of 6)	9326	NR_132746	19296	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	plasmacytoma variant translocation 1	ncRNA	3.880	1.416	0.945	nan	2.399	1.055	4.660	5.938	nan	nan	0.662	0.714	3.732	5.904	4.254	3.160	3.049	2.542	1.183	1.046	0.371	0.741	0.794	0.618	2.359
7449	chr18	86562063	86566854	+	0	NA	Intergenic	L1Md_T|LINE|L1	-146652	NM_001302356	12405	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding	nan	0.391	0.261	0.245	0.060	0.072	0.245	0.358	0.192	0.140	0.201	0.084	0.081	0.131	0.185	0.332	0.389	nan	6.521	4.068	2.855	5.246	8.107	7.137	nan
10040	chr4	45470924	45473477	+	0	NA	intron (NM_001033306, intron 2 of 5)	intron (NM_001033306, intron 2 of 5)	58628	NM_001033306	230126	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	3.435	nan	0.358	3.474	3.046	1.167	3.715	5.391	3.257	3.552	1.301	1.539	2.983	4.919	5.113	5.862	2.240	nan	1.016	0.773	0.528	nan	0.520	0.494	4.460
11748	chr5	129406223	129408925	+	0	NA	Intergenic	Intergenic	-93657	NM_172276	231769	Mm.288714	NM_172276	ENSMUSG00000029439	Sfswap	1190005N23Rik|6330437E22Rik|AI197402|AW212079|SWAP|Sfrs8|Srsf8	splicing factor, suppressor of white-apricot homolog (Drosophila)	protein-coding	0.202	0.282	0.245	0.083	0.212		0.440	0.300	0.196	nan	0.111	0.278	0.138	0.091	nan	0.344	nan	nan	nan	1.856	1.802	1.971	9.250	7.866	nan
10407	chr4	116343006	116352641	+	0	NA	intron (NM_008641, intron 5 of 28)	L1MCa|LINE|L1	116358	NM_001042743	17776	Mm.9287	NM_008641	ENSMUSG00000003810	Mast2	MAST205|Mtssk	microtubule associated serine/threonine kinase 2	protein-coding	3.187	0.957	1.122	1.835	3.173	2.645	3.926	4.963	3.709	2.978	2.541	3.849	4.831	4.164	3.881	3.862	3.307	3.601	0.940	0.840	1.256	0.617	1.163	1.161	1.731
6721	chr17	49673036	49675870	+	0	NA	intron (NM_177052, intron 4 of 22)	intron (NM_177052, intron 4 of 22)	59281	NM_177052	319991	Mm.441340	NM_177052	ENSMUSG00000023999	Kif6	D130004B10Rik|D130084M03Rik	kinesin family member 6	protein-coding	2.812	0.874	0.240	1.245	0.640	0.390	5.787	0.662	1.149	1.670	0.385	0.071	4.386	3.200	1.188	3.091	nan	1.702	0.439	0.526	0.130	0.458	0.276	0.166	3.842
11111	chr5	31352628	31354312	+	0	NA	Intergenic	Intergenic	55889	NM_144909	231103	Mm.100043	NM_144909	ENSMUSG00000059434	Gckr	GKRP	glucokinase regulatory protein	protein-coding	1.257	0.892	0.992	nan	2.513	2.697	2.841	2.157	1.796	1.975	0.942	1.087	1.471	2.125	2.107	1.437	2.008	1.881	3.059	0.985	2.498	0.795	4.106	5.873	1.129
6854	chr17	74333568	74336251	+	0	NA	Intergenic	MLT1H|LTR|ERVL-MaLR	-4078	NM_001162870	50850	Mm.19804	NM_016962	ENSMUSG00000024068	Spast	Spg4|mKIAA1083	spastin	protein-coding	2.411	0.543	0.582	2.180	2.742	3.005	nan	5.491	4.632	3.304	4.250	2.156	5.606	4.137	5.233	nan	6.960	5.313	0.354	0.519	0.640	0.500	0.344	0.438	8.072
4391	chr13	110050011	110057944	+	0	NA	TTS (NM_023852)	TTS (NM_023852)	150168	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	4.938	nan	0.636	4.878	5.786	3.548	4.151	3.721	6.561	7.977	4.676	3.449	6.345	8.006	5.404	7.437	4.068	7.113	2.118	1.433	1.041	nan	1.745	1.511	5.344
15444	chr9	102930939	102932352	+	0	NA	Intergenic	B3|SINE|B2	-76844	NM_033314	24059	Mm.207106	NM_033314	ENSMUSG00000032548	Slco2a1	2310021C19Rik|Pgt|Slc21a2|mPgt	solute carrier organic anion transporter family, member 2a1	protein-coding	4.382	1.307	0.214	3.130	2.324	0.570	4.621	2.623	2.770	3.353	1.356	1.055	2.331	4.323	4.360	4.814	1.461	4.454	0.269	0.239	0.348	0.369	0.457	0.269	7.943
12124	chr6	31158922	31160520	+	0	NA	intron (NR_110471, intron 2 of 3)	intron (NR_110471, intron 2 of 3)	58753	NR_110470	232685	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	4.323	7.418	2.118	4.405	2.874	1.632	2.534	2.889	3.460	3.275	1.187	0.928	2.708	4.384	5.238	7.278	4.441	5.501	1.402	1.029	0.608	1.059	0.766	0.807	4.362
11295	chr5	66399112	66400436	+	0	NA	intron (NM_001201413, intron 6 of 16)	intron (NM_001201413, intron 6 of 16)	-62109	NM_001201416	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	3.024	1.087	0.982	2.355	1.358	2.016	5.431	5.265	2.984	2.576	1.120	2.374	4.082	3.706	4.229	5.243	3.697	3.779	0.669	1.051	1.053	nan	0.391	0.361	2.051
3519	chr12	81385147	81388006	+	0	NA	intron (NM_001309810, intron 3 of 4)	L1_Mur3|LINE|L1	-7090	NM_001038995	214321	Mm.444671	NM_001038995	ENSMUSG00000072974	Gm4787	Adam4b|EG214321	predicted gene 4787	protein-coding	1.346	1.277	0.806	1.145	2.087	1.712	1.013	1.057	1.673	1.514	1.929	1.361	0.677	nan	0.993	nan	1.019	1.183	5.602	5.027	6.007	4.813	6.581	8.598	1.224
846	chr1	167888680	167891130	+	0	NA	Intergenic	Intergenic	200347	NM_033652	110648	Mm.330081	NM_033652	ENSMUSG00000026686	Lmx1a	Lmx1.1|dr|dreher|sst	LIM homeobox transcription factor 1 alpha	protein-coding	0.904	7.476	6.561	nan	0.285	0.501	0.403	0.407	nan	0.377	0.320	0.163	nan	0.269	nan	0.687	0.836	0.845	0.737	0.565	0.150	nan	nan	0.468	nan
15497	chr9	108163431	108169109	+	0	NA	intron (NM_007567, intron 1 of 11)	L1M4b|LINE|L1	24113	NM_007567	12217	Mm.20425	NM_007567	ENSMUSG00000032589	Bsn	-	bassoon	protein-coding	6.885	3.180	0.918	5.558	3.323	2.333	5.941	6.398	nan	8.780	3.169	2.855	6.368	7.419	6.576	8.209	4.392	nan	1.836	0.845	1.298	2.529	1.381	1.499	10.711
7080	chr18	24278698	24281096	+	0	NA	intron (NM_001160404, intron 10 of 12)	intron (NM_001160404, intron 10 of 12)	73903	NM_001160404	14423	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	10.326	9.115	3.160	9.071	4.593	2.106	7.377	9.393	7.227	7.237	8.177	5.090	8.734	8.194	8.459	nan	6.236	10.129	5.376	2.862	2.544	5.910	3.288	2.602	10.345
7311	chr18	62294635	62296319	+	0	NA	Intergenic	Intergenic	-28727	NM_008313	15562	Mm.20440	NM_008313	ENSMUSG00000026322	Htr4	5-HT-4|5-HT4|5-HT<4L>|5HTR4	5 hydroxytryptamine (serotonin) receptor 4	protein-coding	2.286	nan	0.675	4.517	1.401	0.630	0.820	1.965	1.152	1.097	0.786	0.662	nan	1.413	0.880	1.172	0.715	2.972	nan	0.476	0.566	nan	0.258	0.382	1.786
3484	chr12	80533172	80538938	+	0	NA	intron (NM_001081421, intron 1 of 14)	B3|SINE|B2	17065	NM_001081421	108760	Mm.308296	NM_001081421	ENSMUSG00000021130	Galnt16	5730405L21Rik|AI415388|Galntl1|mpp-GalNAc-T16	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 16	protein-coding	4.196	2.764	2.170	2.032	1.538	0.658	3.741	2.270	3.357	3.013	7.786	1.674	4.989	3.920	3.611	nan	5.890	3.618	0.782	0.945	0.484	0.603	0.642	0.604	3.191
7636	chr19	21857634	21860437	+	0	NA	TTS (NM_031997)	TTS (NM_031997)	80695	NM_031997	83921	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	3.993	1.653	0.929	2.984	4.673	3.692	7.014	6.992	4.332	3.488	2.739	3.000	3.537	3.533	3.951	3.972	3.790	5.120	1.171	1.052	1.706	1.921	2.885	3.224	2.962
1296	chr10	56676084	56677759	+	0	NA	Intergenic	Intergenic	299621	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	4.414	0.446	0.356	2.751	4.005	2.093	1.304	2.665	3.914	4.215	2.496	1.598	3.844	4.258	2.607	3.199	2.804	4.654	nan	0.396	0.131	0.174	0.146	0.322	1.367
12459	chr6	91359847	91361784	+	0	NA	Intergenic	Intergenic	50554	NM_009527	22421	Mm.56964	NM_009527	ENSMUSG00000030093	Wnt7a	AI849442|Wnt-7a|px|tw	wingless-type MMTV integration site family, member 7A	protein-coding	1.272	0.892	0.154	2.519	0.310	0.707	7.710	3.248	2.291	4.040	0.132	0.082	2.869	4.203	6.250	5.142	0.892	6.553	nan	0.240	0.396	1.024	0.555	1.076	7.300
8550	chr2	118252933	118255595	+	0	NA	intron (NM_027759, intron 1 of 10)	intron (NM_027759, intron 1 of 10)	2702	NM_027759	71313	Mm.85046	NM_027759	ENSMUSG00000027344	Fsip1	1700012M13Rik|4933432K11Rik	fibrous sheath-interacting protein 1	protein-coding	5.174	0.952	0.751	3.389	1.643	0.974	4.225	5.539	3.617	4.554	0.640	0.471	5.748	5.141	3.722	8.312	5.352	3.872	0.594	0.510	0.460	0.387	0.393	0.429	8.181
1553	chr10	84988210	84992766	+	0	NA	intron (NM_001013441, intron 7 of 8)	intron (NM_001013441, intron 7 of 8)	72875	NM_183172	237422	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	nan	0.813	0.472	0.568	0.431	0.397	0.403	0.717	0.504	0.599	1.194	1.032	0.279	nan	0.416	0.616	0.329	nan	2.447	1.493	1.178	nan	nan	2.053	0.875
15508	chr9	108697337	108702144	+	0	NA	intron (NM_008924, intron 1 of 10)	B4|SINE|B4	7597	NM_008924	19087	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	5.478	1.840	1.153	5.391	2.766	1.292	4.285	6.285	5.226	6.208	4.378	2.828	5.740	8.369	4.916	5.380	2.834	6.994	2.019	1.369	0.630	3.185	1.342	0.681	nan
15300	chr9	74753477	74758726	+	0	NA	Intergenic	Lx5|LINE|L1	-92336	NR_045284	100503019	Mm.482658	NR_045284	ENSMUSG00000066477	Gm16551	-	predicted gene 16551	ncRNA	3.434	1.911	1.410	2.775	3.878	2.464	2.288	6.606	2.713	3.227	1.537	1.316	4.202	5.886	5.007	5.009	2.979	3.335	1.225	nan	1.083	1.553	0.745	0.538	4.803
9113	chr2	180861607	180865853	+	0	NA	Intergenic	Intergenic	-30310	NR_029538	723951		NR_029538	ENSMUSG00000065454	Mir124a-3	Mirn124a-3|mir-124-3|mir-124a-3	microRNA 124a-3	ncRNA	0.257	0.608	0.240	0.265	0.157	0.058	0.445	0.162	0.433	0.282	0.177	0.133	0.108	0.252	0.242	nan	0.463	nan	3.769	2.290	1.867	5.939	2.611	2.045	nan
6445	chr17	27173381	27180743	+	0	NA	Intergenic	Intergenic	-9298	NM_173027	271424	Mm.209679	NM_173027	ENSMUSG00000024210	Ip6k3	D830007E07Rik|Ihpk3	inositol hexaphosphate kinase 3	protein-coding	4.292	6.374	2.724	3.451	6.030	3.970	8.854	5.567	3.177	4.609	5.765	4.290	4.721	7.971	5.382	5.153	3.318	3.552	1.017	1.072	1.301	0.834	0.982	0.761	6.326
2161	chr11	51419537	51420924	+	0	NA	intron (NM_153393, intron 2 of 28)	MLT1B|LTR|ERVL-MaLR	130310	NM_153393	237759	Mm.154093	NM_153393	ENSMUSG00000063564	Col23a1	2810458L13Rik|AI429655	collagen, type XXIII, alpha 1	protein-coding	9.858	22.556	4.809	15.962	5.624	4.743	8.028	nan	6.889	19.934	10.344	5.329	9.685	12.135	12.889	14.390	6.412	13.088	7.731	2.662	5.844	11.791	nan	6.960	20.368
7114	chr18	34488572	34491573	+	0	NA	intron (NM_146084, intron 6 of 20)	B4A|SINE|B4	16751	NM_146084	225358	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	9.869	8.496	2.841	8.723	8.632	5.504	10.915	10.566	5.892	8.858	5.777	4.127	11.667	10.697	8.235	9.357	9.345	8.207	3.859	1.705	2.080	4.534	2.183	2.891	12.017
1303	chr10	57822217	57828901	+	0	NA	Intergenic	B4A|SINE|B4	31015	NM_020561	57319	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	6.721	1.455	1.306	3.667	3.741	2.618	3.721	4.828	4.219	4.000	4.125	2.621	3.984	5.748	4.295	4.469	5.215	6.284	nan	1.100	0.874	1.085	1.493	1.018	nan
14998	chr9	43550831	43553586	+	0	NA	Intergenic	L1MA6|LINE|L1	-192368	NM_021424	58235	Mm.335096	NM_021424	ENSMUSG00000032012	Nectin1	AI835281|AW549174|Cd111|HIgR|HveC|PRR|PRR1|Pvrl1|nectin-1	nectin cell adhesion molecule 1	protein-coding	6.352	6.612	1.698	7.755	1.281	0.959	5.276	6.787	3.587	9.584	8.030	4.183	5.319	6.886	6.975	10.542	4.932	8.565	6.090	1.923	2.992	8.748	2.452	4.454	19.550
5950	chr16	25802060	25807677	+	0	NA	intron (NM_001127265, intron 1 of 8)	intron (NM_001127265, intron 1 of 8)	2952	NM_001127264	22061	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	3.084	0.815	0.462	1.342	0.780	0.321	1.596	3.659	0.872	0.871	9.096	3.107	nan	1.609	1.565	nan	2.018	1.715	0.688	0.705	0.436	0.768	nan	0.454	2.051
3494	chr12	80775529	80777883	+	0	NA	Intergenic	B1F|SINE|Alu	-13826	NM_178682	217684	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	11.015	2.090	1.029	6.318	2.887	1.552	6.698	8.167	6.460	7.070	5.015	3.386	10.043	7.166	7.276	12.654	12.886	6.950	5.702	3.988	1.960	5.292	4.146	3.286	11.290
7999	chr2	21179667	21182165	+	0	NA	3' UTR (NM_027728, exon 5 of 5)	3' UTR (NM_027728, exon 5 of 5)	24449	NM_027728	71233	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	4.813	0.499	0.408	2.266	1.573	0.635	5.187	5.846	3.711	2.367	1.506	2.366	8.717	5.516	5.640	7.532	5.983	4.587	1.031	0.551	0.147	0.793	0.420	0.116	5.424
7432	chr18	82705685	82708376	+	0	NA	Intergenic	Intergenic	-13251	NR_039572	100628586		NR_039572	ENSMUSG00000092638	Mir5112	mmu-mir-5112|mu-mir-5112	microRNA 5112	ncRNA	2.652	nan	7.462	1.599	2.006	1.438	1.123	1.584	1.837	nan	2.057	1.230	1.233	1.271	1.281	1.292	1.308	1.316	1.246	nan	1.376	1.277	1.696	1.276	1.379
3510	chr12	81198863	81207957	+	0	NA	intron (NM_001167920, intron 5 of 6)	intron (NM_001167920, intron 5 of 6)	37259	NR_037227	100526532		NR_037227	ENSMUSG00000092673	Mir3067	mir-3067|mmu-mir-3067	microRNA 3067	ncRNA	6.859	1.563	0.865	3.261	3.504	2.304	6.592	4.833	3.569	3.672	3.889	3.052	7.420	6.489	5.883	nan	6.226	5.658	0.815	0.891	0.933	0.838	0.993	0.848	7.715
15	chr1	9737296	9738945	+	0	NA	intron (NM_173443, intron 1 of 2)	intron (NM_173443, intron 1 of 2)	-9528	NR_040462	73331	Mm.460470	NR_040462		1700034P13Rik	-	RIKEN cDNA 1700034P13 gene	ncRNA	8.993	15.934	4.068	9.701	3.474	1.822	6.676	6.934	3.949	7.749	5.125	2.249	6.555	7.007	8.421	12.609	5.026	8.377	4.143	2.117	2.792	5.288	2.834	2.727	13.782
10994	chr4	155143580	155152210	+	0	NA	Intergenic	Intergenic	61318	NM_001081100	76866	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	3.298	2.677	0.783	2.847	1.523	0.630	2.957	4.304	1.894	2.864	4.122	1.583	3.180	4.330	4.323	4.854	2.395	3.058	1.476	0.682	0.554	1.634	0.775	0.549	6.427
13621	chr7	119532158	119536136	+	0	NA	intron (NM_178758, intron 4 of 13)	intron (NM_178758, intron 4 of 13)	7882	NM_178758	272428	Mm.185183	NM_178758	ENSMUSG00000030972	Acsm5	C730019D22|C730027J19Rik	acyl-CoA synthetase medium-chain family member 5	protein-coding	0.926	0.832	0.587	1.367	1.026	0.526	1.607	0.969	0.959	1.058	0.950	1.031	0.873	nan	1.145	1.086	0.885	1.119	4.506	3.637	2.795	5.621	3.228	2.584	1.002
4624	chr14	45943242	45946055	+	0	NA	Intergenic	Intergenic	-139379	NR_002875	218963	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo	5.002	0.947	1.049	3.268	4.513	3.606	2.961	7.522	2.882	3.538	3.739	2.807	3.981	7.307	3.950	3.747	3.365	3.089	2.784	1.561	1.032	1.815	1.238	0.987	2.592
7255	chr18	55705771	55709129	+	0	NA	Intergenic	RMER20B|LTR|ERVK	-717270	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	9.409	nan	0.772	4.886	6.666	3.252	8.452	5.121	3.946	4.776	1.177	1.087	6.991	6.395	5.898	7.837	6.773	nan	nan	2.482	2.155	3.950	1.947	1.308	7.313
12813	chr6	137517523	137519260	+	0	NA	intron (NM_001271589, intron 2 of 13)	intron (NM_001271589, intron 2 of 13)	1504	NM_001271589	13860	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	3.827	0.500	0.305	0.894	0.642	0.072	1.420	2.814	4.223	3.512	5.576	4.716	3.564	2.159	nan	3.896	2.439	3.352	nan	0.749	0.304	0.866	0.685	0.502	nan
12642	chr6	118074802	118081252	+	0	NA	intron (NM_027526, intron 1 of 12)	intron (NM_027526, intron 1 of 12)	-7165	NR_106011	102465632		NR_106011	ENSMUSG00000098583	Mir7044	Gm27354|mmu-mir-7044	microRNA 7044	ncRNA	6.663	0.580	0.613	4.585	4.699	3.943	10.840	8.885	6.306	6.510	2.560	2.596	15.556	12.224	9.703	10.675	10.525	9.221	1.004	0.670	0.709	0.441	nan	0.548	5.622
12225	chr6	50404856	50411947	+	0	NA	intron (NM_001347213, intron 2 of 23)	intron (NM_001347213, intron 2 of 23)	-25564	NM_027881	71720	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	1.574	3.723	1.380	1.575	0.492	0.450	3.288	4.840	2.490	2.628	6.343	3.611	5.896	5.962	5.278	2.933	1.779	nan	nan	0.862	0.747	3.235	1.095	1.035	4.801
2236	chr11	57457925	57459445	+	0	NA	Intergenic	LTR86A1|LTR|ERVL	59959	NM_001168667	67726	Mm.25632	NM_026342	ENSMUSG00000020523	Fam114a2	1810073G14Rik|9030624B09Rik	family with sequence similarity 114, member A2	protein-coding	8.065	9.536	3.198	6.586	1.417	0.738	5.192	5.326	3.849	8.847	4.921	2.581	3.740	6.561	6.652	6.230	4.583	6.145	3.858	1.992	2.509	4.232	3.156	2.488	11.385
11486	chr5	101146477	101149314	+	0	NA	Intergenic	Intergenic	301666	NM_172715	231510	Mm.271911	NM_172715	ENSMUSG00000029314	Agpat9	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|GPAT-3|Gpat3|mGPAT3	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding	2.130	13.056	6.788	1.859	0.520	0.423	2.167	1.512	1.491	2.337	1.514	1.537	1.637	1.673	2.592	2.435	1.660	2.065	2.311	1.538	1.257	2.428	2.362	1.984	2.900
9671	chr3	106316143	106318840	+	0	NA	Intergenic	Intergenic	88691	NM_178412	229688	Mm.261645	NM_178412	ENSMUSG00000027902	Chil6	BYm|Chil8	chitinase-like 6	protein-coding	3.425	1.055	0.759	2.867	4.066	1.848	3.378	4.185	4.321	5.164	1.370	1.969	4.717	5.853	3.251	3.463	5.758	4.009	0.879	1.147	0.398	0.355	0.620	0.209	2.388
8768	chr2	147531473	147536519	+	0	NA	Intergenic	Intergenic	169002	NM_008780	18503	Mm.315502	NM_008780	ENSMUSG00000037034	Pax1	Pax-1|hbs|hunchback|un|undulated|wt	paired box 1	protein-coding	0.287	0.601	0.719	0.259	0.312		0.263	0.351	0.363	0.358	0.850	0.218	0.132	0.267	0.223	0.526	0.522	0.430	nan	1.060	0.559	3.702	1.221	0.550	0.397
1506	chr10	80375252	80379679	+	0	NA	Intergenic	Intergenic	-7828	NR_038088	100568459		NR_038088		Bc1	Gm24367	brain cytoplasmic RNA 1	ncRNA	0.860	0.941	0.354	nan	0.643	0.629	0.543	2.089	0.606	0.682	0.645	0.479	0.599	0.695	nan	0.687	0.658	0.628	nan	3.487	4.931	5.480	5.208	5.193	1.074
7141	chr18	35989156	35992602	+	0	NA	intron (NR_110349, intron 7 of 14)	intron (NR_110349, intron 7 of 14)	26049	NR_110349	74002	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	1.914	6.612	1.757	3.428	0.948	0.709	1.682	6.519	1.534	4.306	0.840	2.640	1.395	1.874	2.770	nan	1.213	2.454	6.690	3.468	3.997	6.985	5.478	8.400	3.331
4026	chr13	41579186	41588233	+	0	NA	Intergenic	L1MEb|LINE|L1	-22507	NM_001163572	621976	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	3.526	10.691	6.221	3.745	2.080	0.957	nan	nan	nan	nan	1.151	0.967	1.361	2.539	2.030	nan	1.407	3.545	1.554	1.778	0.793	1.321	1.469	1.018	2.372
7205	chr18	39918156	39920907	+	0	NA	Intergenic	Intergenic	146034	NM_011033	18459	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0.597	0.590	0.936	0.605	0.453	0.314	0.715	0.645	0.834	0.520	0.539	0.572	0.679	nan	0.666	nan	0.688	1.161	1.588	0.737	0.312	4.193	0.695	0.511	0.627
14991	chr9	42882339	42885045	+	0	NA	intron (NM_175481, intron 1 of 20)	intron (NM_175481, intron 1 of 20)	60679	NM_175481	110637	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	2.840	1.591	0.939	2.284	2.183	1.667	0.793	1.742	2.125	2.205	4.842	2.289	1.537	1.767	1.597	2.678	nan	2.543	nan	0.702	0.904	0.461	0.717	0.878	1.786
14192	chr8	46017926	46024807	+	0	NA	intron (NM_026278, intron 6 of 8)	intron (NM_026278, intron 6 of 8)	10764	NM_026278	67620	Mm.383914	NM_026278	ENSMUSG00000031637	Lrp2bp	1700113N17Rik|2310006J04Rik|4930479L12Rik|MegBP	Lrp2 binding protein	protein-coding	5.582	1.435	0.604	3.985	2.105	1.219	6.076	6.546	3.770	5.563	8.904	3.360	7.235	5.792	6.740	8.821	6.822	5.988	2.722	2.342	1.969	4.507	1.875	1.665	9.363
6312	chr17	6981129	6988370	+	0	NA	intron (NM_026611, intron 3 of 8)	intron (NM_026611, intron 3 of 8)	5889	NM_026611	68195	Mm.181237	NM_026611	ENSMUSG00000094724	Rnaset2b	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2B	protein-coding	7.484	12.215	4.945	7.964	4.566	2.222	9.257	7.864	5.690	7.868	6.663	5.314	6.567	10.125	10.332	12.287	8.256	8.262	4.612	2.363	1.981	4.930	2.472	1.899	12.653
11715	chr5	124667389	124688807	+	0	NA	intron (NM_011596, intron 9 of 19)	intron (NM_011596, intron 9 of 19)	-46987	NM_019536	56087	Mm.261014	NM_019536	ENSMUSG00000038011	Dnah10	Dnahc10	dynein, axonemal, heavy chain 10	protein-coding	1.373	2.269	0.919	2.908	1.067	0.680	1.290	1.150	1.432	nan	0.533	0.513	1.344	1.900	nan	2.063	nan	nan	nan	3.890	2.824	7.328	nan	3.783	nan
6522	chr17	31017100	31021531	+	0	NA	Intergenic	Intergenic	-38379	NM_009593	11307	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP-binding cassette, sub-family G (WHITE), member 1	protein-coding	0.634	0.595	0.337	1.606	0.317	0.249	0.224	0.230	0.554	0.495	0.298	0.316	0.050	0.300	0.328	nan	0.415	1.576	2.931	2.325	1.816	4.675	1.175	0.633	0.789
12416	chr6	87997414	88005647	+	0	NA	intron (NM_001293652, intron 7 of 7)	intron (NM_001293652, intron 7 of 7)	18265	NM_001293654	19349	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	4.238	0.809	0.680	nan	2.148	1.340	3.893	7.245	1.824	1.869	1.699	1.021	4.881	5.967	3.601	5.441	4.090	nan	nan	0.907	0.666	1.170	1.493	1.332	4.109
859	chr1	170638526	170640564	+	0	NA	Intergenic	Intergenic	-4987	NM_177068	320078	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	4.836	0.435	0.464	3.466	3.576	3.190	6.626	3.199	4.512	3.365	8.789	5.406	6.268	6.854	nan	8.600	4.345	5.306	1.203	1.239	1.858	nan	3.016	2.423	nan
10934	chr4	150170905	150176394	+	0	NA	Intergenic	Intergenic	24677	NM_001085529	435818	Mm.359648	NM_001085529	ENSMUSG00000062064	Slc2a7	OTTMUSG00000010396	solute carrier family 2 (facilitated glucose transporter), member 7	protein-coding	5.123	nan	2.104	4.616	6.522	3.803	4.709	6.236	5.394	5.154	2.931	3.146	5.551	7.738	6.177	5.459	3.208	5.645	2.309	0.986	1.223	3.056	1.112	0.895	4.520
8578	chr2	119397732	119398963	+	0	NA	intron (NM_026574, intron 28 of 35)	intron (NM_026574, intron 28 of 35)	47105	NM_026929	69065	Mm.35083	NM_026929	ENSMUSG00000027313	Chac1	1810008K03Rik	ChaC, cation transport regulator 1	protein-coding	5.363	0.555	0.716	2.584	4.595	5.747	3.752	6.913	4.294	5.428	0.821	1.783	nan	4.902	3.343	4.106	5.614	4.080	1.153	1.033	1.282	0.630	1.083	1.235	3.141
4284	chr13	93299830	93302515	+	0	NA	Intergenic	Intergenic	-2585	NM_147176	26556	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	6.514	8.714	2.918	8.767	2.976	2.031	4.491	4.609	5.702	7.734	4.308	4.177	6.604	6.682	7.956	8.660	4.342	8.287	2.735	1.046	1.646	3.875	1.294	1.776	10.903
4507	chr14	21447656	21455885	+	0	NA	Intergenic	RSINE1|SINE|B4	-48000	NM_001205241	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	2.328	0.771	0.673	2.352	4.634	3.775	0.963	2.466	nan	2.019	1.423	0.903	1.477	2.593	1.526	1.776	1.462	3.232	1.090	1.121	1.172	nan	1.044	1.278	1.410
2890	chr11	106060202	106061796	+	0	NA	Intergenic	B1_Mur1|SINE|Alu	-5108	NM_027346	70207	Mm.343857	NM_027346	ENSMUSG00000001983	Taco1	2310066I18Rik|Ccdc44	translational activator of mitochondrially encoded cytochrome c oxidase I	protein-coding	2.756	1.763	1.552	1.680	4.191	2.770	0.757	1.146	2.105	nan	0.767	1.045	0.718	2.667	0.622	1.654	1.778	1.874	1.580	1.246	0.745	nan	1.668	0.892	0.660
14706	chr8	124092349	124106438	+	0	NA	Intergenic	Intergenic	75920	NM_001029876	382038	Mm.334891	NM_001029876	ENSMUSG00000031976	Urb2	C77575|mKIAA0133	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	protein-coding	4.504	nan	0.754	nan	3.420	2.916	nan	11.391	3.708	4.356	2.480	1.842	5.630	6.115	nan	6.580	4.203	nan	nan	1.584	1.971	nan	1.868	nan	nan
11960	chr5	147883894	147890404	+	0	NA	intron (NM_027872, intron 2 of 5)	intron (NM_027872, intron 2 of 5)	7653	NM_027872	71706	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	8.162	7.412	3.336	7.778	8.736	5.852	8.429	7.033	nan	9.412	4.095	2.466	6.530	10.324	7.241	nan	6.274	9.315	3.260	2.067	2.284	2.816	2.868	2.893	nan
9677	chr3	107159632	107161873	+	0	NA	Intergenic	Intergenic	-22391	NM_001081140	242151	Mm.245155	NM_001081140	ENSMUSG00000042861	Kcna10	Gm1962|Kcna8|Kv1.8	potassium voltage-gated channel, shaker-related subfamily, member 10	protein-coding	3.914	0.860	0.416	1.731	2.414	1.024	1.771	3.121	2.438	4.836	0.875	0.577	4.049	5.342	nan	2.321	1.766	2.653	0.982	0.826	0.438	1.712	1.157	0.471	2.327
3967	chr13	36342487	36343370	+	0	NA	intron (NM_001039189, intron 4 of 5)	Lx8b|LINE|L1	225285	NM_001039189	69955	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	2.188	nan	0.478	1.225	1.367	1.120	nan	2.073	nan	nan	0.414	0.248	1.549	3.430	2.321	nan	3.090	nan	0.452	1.032	0.555	0.299	0.552	0.636	2.627
13055	chr7	29117901	29125024	+	0	NA	intron (NM_009109, intron 1 of 105)	B1_Mm|SINE|Alu	3689	NM_009109	20190	Mm.439745	NM_009109	ENSMUSG00000030592	Ryr1	AI528790|RYR-1|Ryr|skrr	ryanodine receptor 1, skeletal muscle	protein-coding	4.569	3.875	2.546	4.255	5.426	5.292	4.144	4.597	2.983	3.771	2.736	1.825	4.073	4.515	3.381	3.830	4.243	4.403	2.366	2.261	3.414	2.617	2.615	3.211	4.895
135	chr1	40231776	40233144	+	0	NA	intron (NM_008362, intron 1 of 10)	intron (NM_008362, intron 1 of 10)	7380	NM_008362	16177	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	5.959	0.836	0.271	2.174	1.367	0.779	1.645	1.638	2.072	2.420	1.847	1.429	3.715	3.027	2.498	3.502	2.035	2.651	0.518	0.597	0.363	0.455	0.543	0.203	5.200
9597	chr3	100847929	100856879	+	0	NA	intron (NM_178594, intron 1 of 5)	intron (NM_178594, intron 1 of 5)	26945	NM_178594	242122	Mm.137467	NM_178594	ENSMUSG00000051076	Vtcn1	B7h4|B7s1|B7x|BC032925	V-set domain containing T cell activation inhibitor 1	protein-coding	3.290	1.518	0.544	3.838	2.868	1.500	5.117	3.340	4.038	4.227	nan	2.015	5.170	5.356	5.722	6.412	3.322	5.594	0.800	0.597	0.461	1.089	0.406	0.254	6.001
3344	chr12	56587348	56595335	+	0	NA	intron (NR_046002, intron 1 of 4)	intron (NR_046002, intron 1 of 4)	282	NR_046002	97836	Mm.410567	NR_046002	ENSMUSG00000092515	C87198	-	expressed sequence C87198	ncRNA	9.585	15.044	5.040	12.100	4.214	2.091	5.423	6.734	5.824	8.431	5.514	3.218	5.640	7.492	6.958	7.806	5.000	8.774	3.770	1.625	2.138	4.423	1.995	2.243	10.743
4687	chr14	55763865	55770305	+	0	NA	intron (NM_008519, intron 1 of 1)	intron (NM_008519, intron 1 of 1)	1123	NM_008519	16995	Mm.20853	NM_008519	ENSMUSG00000046908	Ltb4r1	BLT1|BLTR|Ltb4r|mBLTR	leukotriene B4 receptor 1	protein-coding	0.656	nan	1.132	0.882	0.470	0.222	0.389	nan	0.577	0.688	0.281	0.450	0.275	0.351	0.662	0.808	0.470	0.778	1.855	1.929	1.083	5.078	1.392	1.135	0.783
14660	chr8	120898301	120906440	+	0	NA	Intergenic	Intergenic	163731	NM_001301811	15900	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.464	0.384	0.414	0.411	0.353	0.217	0.331	0.327	0.405	0.277	0.656	0.493	0.171	0.335	0.287	nan	0.419	0.438	2.263	2.969	1.753	6.127	2.508	1.578	0.463
6489	chr17	29125290	29129977	+	0	NA	Intergenic	Intergenic	-7423	NM_001002786	442827	Mm.440341	NM_001002786	ENSMUSG00000064147	Rab44	9830134C10Rik	RAB44, member RAS oncogene family	protein-coding	2.429	1.132	0.840	3.001	2.237	1.662	2.082	1.811	3.083	3.142	0.690	0.924	3.791	4.451	2.549	3.059	2.861	2.474	1.047	1.022	0.919	1.096	0.376	0.450	2.405
145	chr1	40571251	40573453	+	0	NA	Intergenic	Intergenic	-7875	NM_177084	110895	Mm.108602	NM_177084	ENSMUSG00000026065	Slc9a4	AW990558|D730009J23Rik|NHE4	solute carrier family 9 (sodium/hydrogen exchanger), member 4	protein-coding	7.474	4.052	1.990	3.681	2.473	1.132	4.734	6.610	6.123	4.230	6.174	4.912	9.301	4.389	4.675	11.190	8.988	7.904	0.818	0.664	0.334	0.481	0.313	0.256	3.392
10419	chr4	117586550	117588478	+	0	NA	intron (NM_001285901, intron 3 of 7)	intron (NM_001285901, intron 3 of 7)	37149	NM_080469	140546	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	7.052	9.735	3.591	11.025	3.719	2.126	6.323	5.350	5.064	9.518	5.812	3.471	4.294	6.841	7.697	8.889	4.856	7.635	6.233	4.773	4.035	9.188	4.817	3.967	14.606
2674	chr11	94959639	94960479	+	0	NA	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-7534	NM_018792	54388	Mm.30482	NM_018792	ENSMUSG00000038994	Hils1	H1.9|TISP64	histone H1-like protein in spermatids 1	protein-coding	1.305	nan	0.342	2.266	1.878	1.280	2.900	2.239	1.087	1.346	3.496	6.546	2.075	3.181	1.915	1.663	nan	2.145	1.436	nan	1.219	1.983	nan	nan	1.759
1131	chr10	19310823	19319972	+	0	NA	Intergenic	Intergenic	-41142	NM_053008	94222	Mm.156946	NM_053008	ENSMUSG00000045591	Olig3	Bhlhb7|bHLHe20|oligo3	oligodendrocyte transcription factor 3	protein-coding	8.488	7.830	2.898	5.103	2.809	1.706	1.938	8.666	nan	6.683	6.393	2.569	6.650	7.498	4.575	6.251	5.712	6.985	1.990	1.661	1.128	1.532	1.523	1.537	nan
8472	chr2	101725660	101726663	+	0	NA	intron (NM_175181, intron 8 of 8)	RMER17B|LTR|ERVK	47741	NM_001303273	22034	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	5.999	4.007	1.701	4.975	1.996	1.026	3.138	4.617	4.242	4.009	1.364	1.250	3.619	4.882	4.328	5.085	2.929	4.753	3.017	2.299	1.453	3.091	2.546	1.246	6.976
1876	chr10	128357759	128361979	+	0	NA	intron (NM_026444, intron 9 of 10)	intron (NM_026444, intron 9 of 10)	10168	NM_001081040	210582	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	8.956	4.616	1.650	6.320	3.807	1.812	7.795	6.450	4.395	6.732	5.274	2.379	6.638	8.001	6.731	7.979	5.410	6.075	2.833	1.712	0.972	2.577	nan	1.446	9.281
1759	chr10	116186511	116189167	+	0	NA	intron (NM_011217, intron 5 of 13)	intron (NM_011217, intron 5 of 13)	10488	NM_001161840	19279	Mm.336316	NM_011217	ENSMUSG00000020151	Ptprr	Gmcp1|PTP-SL|PTPBR7|RPTPRR|mPTP213	protein tyrosine phosphatase, receptor type, R	protein-coding	7.920	2.116	1.654	2.574	5.515	3.012	5.329	3.656	3.557	3.903	5.266	2.049	3.370	4.754	3.221	3.918	2.621	nan	1.557	0.754	0.472	1.501	1.509	1.313	4.817
7916	chr19	61021211	61023743	+	0	NA	intron (NM_018869, intron 2 of 15)	intron (NM_018869, intron 2 of 15)	118363	NR_131956	414758	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	6.860	nan	0.949	6.099	5.324	3.234	2.442	5.392	3.289	4.067	2.428	1.919	2.314	5.438	2.586	3.144	2.157	4.461	1.932	2.282	1.934	3.261	2.404	1.621	4.434
9489	chr3	90288802	90292679	+	0	NA	Intergenic	B3|SINE|B2	20591	NR_105979	102465612		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	4.258	0.936	0.723	2.235	2.913	2.606	5.988	4.510	3.040	3.169	2.997	3.040	6.117	7.406	4.491	nan	3.644	4.867	nan	0.635	0.474	1.082	0.876	0.804	3.665
8208	chr2	37602666	37606643	+	0	NA	intron (NM_009261, intron 9 of 16)	B1_Mur4|SINE|Alu	42631	NM_009261	20744	Mm.237095	NM_009261	ENSMUSG00000026915	Strbp	6430510M02Rik|AI852513|C230082I21Rik|C86322|Spnr	spermatid perinuclear RNA binding protein	protein-coding	1.096	1.924	0.953	0.772	0.258	0.160	1.584	5.283	0.558	nan	0.715	0.161	2.219	0.956	1.556	2.911	3.288	1.159	1.007	0.923	0.543	1.461	0.605	0.345	1.400
6952	chr17	87774614	87781146	+	0	NA	intron (NM_199251, intron 1 of 1)	intron (NM_199251, intron 1 of 1)	20114	NM_199251	210741	Mm.312046	NM_199251	ENSMUSG00000050138	Kcnk12	mntk1	potassium channel, subfamily K, member 12	protein-coding	2.366	4.850	1.950	2.463	1.113	0.517	2.235	1.086	nan	1.742	0.996	0.814	1.267	1.857	2.266	2.981	1.411	2.480	2.182	1.853	1.854	5.359	1.307	1.293	3.174
9226	chr3	34546913	34565822	+	0	NA	Intergenic	Intergenic	-4014	NR_015580	320478	Mm.444063	NR_015580	ENSMUSG00000105265	Sox2ot	B230215L15Rik	SOX2 overlapping transcript (non-protein coding)	ncRNA	0.407	0.439	0.414	1.415	0.377	0.164	0.388	0.314	nan	1.597	4.189	5.283	0.637	0.748	0.951	0.537	0.654	0.490	nan	4.672	2.893	nan	6.805	5.366	0.552
8183	chr2	35288679	35290093	+	0	NA	intron (NM_001206368, intron 3 of 16)	intron (NM_001206368, intron 3 of 16)	7006	NM_146120	227753	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	4.761	4.292	0.946	5.203	1.138	0.915	2.240	nan	2.068	3.028	3.966	1.331	1.177	2.672	2.631	3.418	1.569	3.795	1.189	0.899	0.744	1.260	0.433	0.230	4.530
7315	chr18	62939152	62942733	+	0	NA	intron (NM_133237, intron 3 of 4)	intron (NM_133237, intron 3 of 4)	18615	NM_133237	494504	Mm.391102	NM_133237	ENSMUSG00000071847	Apcdd1	AB023957|AU041258|Drapc1|EIG180	adenomatosis polyposis coli down-regulated 1	protein-coding	nan	nan	0.107	nan	0.161	0.208	0.184	nan	0.455	0.407	0.602	0.368	nan	0.308	0.346	0.573	0.527	nan	nan	1.589	1.132	5.180	2.040	1.360	nan
15848	chrX	151648282	151651474	+	0	NA	Intergenic	L1_Mus4|LINE|L1	129206	NM_001113354	320595	Mm.17156	NM_177201	ENSMUSG00000041229	Phf8	9830141C09Rik|mKIAA1111	PHD finger protein 8	protein-coding	7.177	5.443	2.110	5.823	4.166	1.896	5.520	5.214	5.256	6.172	5.285	2.923	6.147	6.610	5.447	6.697	4.925	6.545	1.891	1.848	1.010	1.890	1.362	0.750	6.415
4605	chr14	35485512	35488378	+	0	NA	intron (NM_008166, intron 12 of 15)	(TCCC)n|Simple_repeat|Simple_repeat	325033	NM_001033766	239036	Mm.239970	NM_001033766	ENSMUSG00000041068	4930596D02Rik	-	RIKEN cDNA 4930596D02 gene	protein-coding	7.782	10.754	3.169	8.828	5.480	4.075	6.797	9.601	5.626	11.102	5.310	3.770	6.047	9.305	8.239	9.384	4.683	8.460	5.757	2.758	3.678	4.617	4.407	4.895	13.959
15011	chr9	44142052	44144350	+	0	NA	TTS (NM_023061)	TTS (NM_023061)	8543	NM_023061	84004	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	5.376	16.585	6.705	6.595	2.561	3.128	3.837	4.728	3.732	6.693	4.852	2.670	4.519	4.807	nan	nan	3.236	6.390	6.617	2.851	4.084	nan	4.150	6.885	12.872
13645	chr7	120390901	120407925	+	0	NA	intron (NM_177213, intron 26 of 30)	intron (NM_177213, intron 26 of 30)	-10234	NM_001278943	233810		NM_001278943	ENSMUSG00000051900	Abca16	AY243472	ATP-binding cassette, sub-family A (ABC1), member 16	protein-coding	4.541	1.400	0.745	2.908	3.224	2.118	7.082	6.054	2.568	3.299	3.924	2.336	5.941	6.489	5.319	5.947	5.096	5.115	2.729	1.285	1.225	2.264	2.614	2.076	6.433
6430	chr17	26571344	26581295	+	0	NA	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	14807	NM_026170	67458	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	2.305	1.148	0.574	1.999	1.063	0.698	1.916	1.687	1.145	1.597	0.812	0.798	1.412	1.749	1.984	2.533	2.158	1.563	4.243	2.079	1.783	3.581	1.497	1.268	2.919
13712	chr7	129050293	129052125	+	0	NA	Intergenic	Intergenic	-205885	NM_001080963	381925	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	3.692	0.537	0.614	2.467	1.345	0.809	2.854	3.352	3.100	4.266	0.500	0.498	3.099	3.872	2.704	3.162	2.614	4.220	4.574	1.964	0.882	3.321	5.925	3.572	4.904
3026	chr11	117066243	117070157	+	0	NA	Intergenic	Intergenic	-8583	NR_027059	76972	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	3.790	nan	0.364	1.214	4.344	1.744	nan	nan	4.252	nan	6.709	3.657	3.714	6.770	4.514	5.729	3.167	nan	3.161	nan	0.779	2.101	1.759	1.519	7.093
13082	chr7	30237402	30238518	+	0	NA	Intergenic	ID_B1|SINE|B4	-1195	NM_001289817	381867	Mm.483986	NM_001289817	ENSMUSG00000100512	Ovol3	Gm1903|movo3	ovo like zinc finger 3	protein-coding	4.882	1.872	0.314	5.088	1.157	0.371	3.506	6.107	4.808	3.537	2.970	4.019	3.170	3.018	5.085	5.750	2.126	6.345	2.776	2.132	0.504	6.649	2.082	0.606	5.037
11777	chr5	135087561	135092095	+	0	NA	Intergenic	CpG	-11562	NM_001199677	194309	Mm.44356	NM_177574	ENSMUSG00000043614	Vps37d	Wbscr24	vacuolar protein sorting 37D	protein-coding	3.055	11.595	5.891	2.151	1.398	1.315	1.203	1.353	2.273	2.437	1.713	1.448	1.109	1.754	1.882	1.777	1.098	2.088	1.105	1.616	1.195	0.951	nan	0.682	2.612
1528	chr10	80958390	80959882	+	0	NA	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	29045	NM_008655	17873	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	10.810	9.827	5.750	7.865	5.020	2.782	7.098	6.588	4.479	8.433	7.325	3.076	4.521	7.905	6.597	8.770	5.732	7.010	nan	6.342	2.086	5.578	6.772	4.344	11.551
14740	chr8	125454692	125463032	+	0	NA	intron (NM_001081337, intron 8 of 20)	intron (NM_001081337, intron 8 of 20)	33848	NM_001081337	244668	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	4.763	4.313	2.338	nan	2.564	1.490	nan	3.774	2.871	2.643	3.139	1.756	3.093	2.891	3.655	4.745	3.999	4.454	4.054	2.991	2.004	nan	2.608	nan	nan
6919	chr17	84669124	84675016	+	0	NA	intron (NM_031884, intron 6 of 12)	intron (NM_031884, intron 6 of 12)	-4232	NM_001286005	67470	Mm.26581	NM_026180	ENSMUSG00000024254	Abcg8	1300003C16Rik|AI114946|sterolin-2	ATP-binding cassette, sub-family G (WHITE), member 8	protein-coding	3.970	3.194	1.139	4.114	2.026	1.162	1.758	2.121	3.391	2.860	2.467	1.237	2.613	3.260	2.860	4.244	2.688	3.958	1.457	1.091	1.264	1.629	0.578	0.397	5.190
11129	chr5	32333552	32339531	+	0	NA	intron (NM_001081407, intron 44 of 58)	intron (NM_001081407, intron 44 of 58)	-17039	NM_172147	665270	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	4.149	0.633	0.404	3.076	3.551	1.511	4.430	6.748	4.162	3.893	3.436	2.040	4.401	6.039	5.208	4.767	3.528	5.126	1.537	0.791	0.477	2.004	0.988	0.849	3.967
7615	chr19	18831028	18835085	+	0	NA	intron (NM_153417, intron 24 of 38)	RMER6A|LTR|ERVK	83073	NM_153417	225997	Mm.215171	NM_153417	ENSMUSG00000024727	Trpm6	CHAK2|TRPM6/CHAK2	transient receptor potential cation channel, subfamily M, member 6	protein-coding	6.074	0.359	0.232	3.465	3.698	1.974	6.116	3.312	4.304	4.847	2.762	2.301	6.311	7.508	4.688	6.909	8.334	nan	0.442	0.708	0.272	0.439	0.899	0.517	7.299
6456	chr17	27770119	27772853	+	0	NA	intron (NM_001033279, intron 3 of 4)	intron (NM_001033279, intron 3 of 4)	-42535	NM_013891	30051	Mm.26768	NM_013891	ENSMUSG00000024215	Spdef	PDEF|Pse	SAM pointed domain containing ets transcription factor	protein-coding	5.851	9.355	3.715	6.690	3.882	3.631	7.545	5.275	4.610	7.203	5.458	3.350	4.535	5.606	7.325	8.656	5.643	5.752	3.550	2.305	3.424	3.837	2.397	3.782	11.864
3064	chr11	118221406	118227980	+	0	NA	intron (NM_001112699, intron 1 of 12)	intron (NM_001112699, intron 1 of 12)	-11951	NM_001112700	19157	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	5.604	nan	0.733	6.632	4.843	3.092	nan	4.584	3.134	3.293	2.936	1.785	3.078	4.677	3.962	4.313	2.501	nan	2.047	nan	1.669	3.890	1.461	1.198	6.033
509	chr1	120343144	120347224	+	0	NA	Intergenic	Intergenic	4602	NM_207233	226359	Mm.337409	NM_207233	ENSMUSG00000036907	C1ql2	BC040774|CTRP10	complement component 1, q subcomponent-like 2	protein-coding	5.829	1.687	0.913	1.799	3.230	1.812	2.614	4.477	2.467	2.985	1.696	1.330	2.943	4.435	3.004	3.557	3.252	3.673	1.735	1.010	0.684	1.110	1.422	0.870	3.227
3708	chr12	109469194	109476477	+	0	NA	Intergenic	Intergenic	19380	NM_010052	13386	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta-like 1 homolog (Drosophila)	protein-coding	1.300	0.638	0.214	nan	1.192	0.462	1.747	nan	nan	nan	0.899	0.622	1.435	nan	1.951	2.052	0.957	2.786	4.387	2.459	2.099	5.955	3.789	3.068	3.109
1015	chr1	191184033	191189083	+	0	NA	Intergenic	Intergenic	-3225	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	3.204	0.432	0.489	2.120	2.121	1.205	4.699	2.116	2.066	2.064	1.981	1.302	5.606	4.387	4.231	6.376	4.967	4.496	3.047	1.375	0.607	2.675	2.031	1.366	3.595
7450	chr19	3318797	3327085	+	0	NA	promoter-TSS (NM_013495)	promoter-TSS (NM_013495)	-360	NM_013495	12894	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	7.965	8.348	3.038	9.373	2.819	1.506	7.540	11.187	nan	7.607	3.442	3.337	7.117	7.737	8.646	10.359	8.599	7.852	2.827	2.060	1.716	4.531	2.229	1.638	10.321
976	chr1	184270559	184272387	+	0	NA	Intergenic	Intergenic	237012	NM_022019	63953	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	9.291	8.998	2.147	9.190	3.934	3.049	6.465	6.098	4.758	13.356	4.658	3.619	6.341	6.275	6.924	10.913	5.473	8.989	4.725	2.608	2.880	6.717	3.970	4.715	12.890
11041	chr5	19760654	19762909	+	0	NA	intron (NM_001170746, intron 2 of 22)	intron (NM_001170746, intron 2 of 22)	-145737	NM_001170745	50791	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	1.284	1.349	1.009	0.795	0.929	0.215	0.992	1.306	0.812	0.783	0.315	0.413	0.363	0.615	0.871	1.258	0.945	1.164	3.786	4.099	1.344	1.782	6.419	5.021	0.637
13023	chr7	26209846	26211426	+	0	NA	TTS (NM_010000)	TTS (NM_010000)	37227	NM_010000	13094	Mm.14413	NM_010000	ENSMUSG00000040660	Cyp2b9	Cyp2b	cytochrome P450, family 2, subfamily b, polypeptide 9	protein-coding	2.804	0.886	0.827	2.105	2.822	2.098	1.442	3.875	2.784	2.509	2.050	1.424	2.770	4.085	1.640	2.149	4.374	3.246	0.976	1.504	0.982	1.083	1.310	1.457	2.072
12248	chr6	53768102	53770956	+	0	NA	Intergenic	Lx8|LINE|L1	51296	NM_025817	66873	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	1.371	1.052	0.137	3.983	0.285	0.195	1.212	0.755	0.939	2.117	0.149	0.423	0.804	0.600	0.787	1.737	nan	2.510	nan	0.709	1.020	3.390	1.079	1.377	4.406
8147	chr2	32757641	32765489	+	0	NA	TTS (NM_001290566)	TTS (NM_001290566)	4331	NM_152800	30933	Mm.200695	NM_152800	ENSMUSG00000009563	Tor2a	Prosalusin	torsin family 2, member A	protein-coding	4.818	1.337	0.538	5.823	3.546	2.285	3.612	4.905	nan	3.834	2.950	2.293	3.552	4.555	5.402	6.780	3.675	6.039	3.624	1.633	1.273	3.901	1.783	1.377	8.443
6910	chr17	84505372	84510914	+	0	NA	Intergenic	RCHARR1|DNA|hAT-Charlie	-3752	NM_177606	213556	Mm.215159	NM_177606	ENSMUSG00000040852	Plekhh2	AI256725|E030001K05|mKIAA2028	pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	protein-coding	6.124	2.379	1.534	4.610	5.730	3.694	5.213	5.367	3.976	4.903	8.883	3.750	5.026	5.812	4.398	4.472	4.111	3.644	1.609	1.293	1.780	1.105	1.423	1.349	4.711
6174	chr16	87040025	87042476	+	0	NA	Intergenic	Intergenic	-312935	NM_001159331	67768	Mm.296532	NM_026366	ENSMUSG00000044442	N6amt1	5830445C04Rik|Hemk2|Pred28	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding	2.426	nan	0.511	1.054	1.292	0.929	0.811	4.277	1.525	1.503	2.334	4.610	1.137	1.167	1.261	0.568	1.161	nan	0.694	0.280	0.173	nan	0.443	0.270	0.509
3589	chr12	87306382	87316852	+	0	NA	intron (NM_011479, intron 11 of 11)	B1_Mus1|SINE|Alu	-11912	NM_001290302	217738	Mm.219363	NM_001290302	ENSMUSG00000050671	Ism2	Gm264|Thsd3	isthmin 2	protein-coding	1.632	3.421	1.765	2.119	0.797	0.472	1.048	0.970	1.727	1.439	3.299	2.922	0.867	1.232	1.372	nan	1.345	2.177	5.648	3.875	2.713	7.213	3.563	2.656	nan
11415	chr5	91186713	91191604	+	0	NA	Intergenic	Lx9|LINE|L1	49559	NM_009704	11839	Mm.8039	NM_009704	ENSMUSG00000029378	Areg	AR|Mcub|Sdgf	amphiregulin	protein-coding	3.116	0.798	0.319	1.165	0.764	0.313	4.709	2.173	1.236	1.179	6.542	2.657	1.910	2.626	2.596	1.886	1.154	1.186	0.399	0.561	0.401	0.571	0.274	0.246	2.345
2265	chr11	59938501	59940346	+	0	NA	Intergenic	Intergenic	8724	NR_045273	100504121	Mm.383770	NR_045273	ENSMUSG00000085260	Med9os	1700013G23Rik	mediator complex subunit 9, opposite strand	ncRNA	2.648	1.638	0.985	1.757	3.047	2.857	4.053	4.270	2.456	2.078	1.980	1.659	3.571	3.630	2.784	3.941	2.828	3.324	nan	1.577	1.481	1.163	1.893	1.347	2.469
13398	chr7	89835684	89837747	+	0	NA	intron (NM_181407, intron 7 of 13)	intron (NM_181407, intron 7 of 13)	66914	NM_001162979	70884	Mm.252823	NM_001162979	ENSMUSG00000039391	Ccdc81	4921513D09Rik	coiled-coil domain containing 81	protein-coding	2.980	1.009	0.836	0.947	3.124	2.010	3.779	3.594	nan	1.821	1.994	1.135	2.308	5.151	3.186	2.719	2.282	nan	1.128	1.535	0.653	nan	1.396	0.787	2.274
11735	chr5	125638411	125641662	+	0	NA	intron (NM_001190352, intron 3 of 8)	intron (NM_001190352, intron 3 of 8)	107618	NM_001190352	208151	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding	1.836	6.441	3.172	2.855	1.693	1.121	1.911	1.835	1.581	nan	1.910	1.023	1.196	1.848	nan	2.270	nan	2.617	5.702	2.602	2.556	5.611	nan	4.359	3.283
14486	chr8	96828374	96832520	+	0	NA	Intergenic	Intergenic	-284474	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	5.952	1.167	0.412	2.929	2.490	1.244	3.413	5.356	3.922	4.847	1.885	0.963	6.119	7.568	6.460	7.928	4.902	6.387	0.575	0.649	0.395	0.796	0.522	0.375	7.657
8601	chr2	120896775	120899017	+	0	NA	intron (NM_009461, intron 32 of 46)	B1_Mur4|SINE|Alu	47240	NR_038350	100502700	Mm.330516	NR_038349	ENSMUSG00000087519	AV039307	-	expressed sequence AV039307	ncRNA	2.983	0.729	0.643	2.833	0.558	0.215	1.374	0.943	2.827	3.167	0.480	0.394	6.931	6.984	5.888	6.922	4.390	4.228	0.867	0.308	0.055	1.360	0.559	0.272	3.743
12286	chr6	66906744	66908913	+	0	NA	intron (NM_001177558, intron 1 of 4)	intron (NM_001177558, intron 1 of 4)	10937	NM_001177558	14701	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	2.650	2.896	1.978	1.326	1.933	1.188	2.830	3.330	1.516	1.677	1.063	0.354	2.468	3.225	1.923	2.426	2.586	3.141	1.482	1.120	1.136	1.256	1.923	1.701	1.978
11505	chr5	104204352	104209576	+	0	NA	intron (NM_016779, intron 1 of 5)	intron (NM_016779, intron 1 of 5)	4347	NM_016779	13406	Mm.199008	NM_016779	ENSMUSG00000029307	Dmp1	AV020965|Dmp|PP	dentin matrix protein 1	protein-coding	5.197	1.006	0.654	4.083	5.904	3.964	4.435	5.840	3.668	4.269	3.364	2.148	3.504	5.977	4.986	5.428	4.563	5.191	nan	1.491	1.298	1.427	1.106	0.971	4.508
2129	chr11	48632773	48634304	+	0	NA	Intergenic	L1_Mur2|LINE|L1	-166822	NM_008143	14694	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	3.307	2.858	1.715	2.890	5.991	1.687	2.140	7.208	2.892	3.509	5.889	3.313	2.304	4.238	3.538	2.498	2.938	2.857	nan	1.311	0.493	nan	nan	0.625	2.132
15178	chr9	63522262	63523465	+	0	NA	intron (NM_001311098, intron 11 of 21)	intron (NM_001311098, intron 11 of 21)	79630	NM_030068	78250	Mm.444612	NM_030068	ENSMUSG00000037801	Iqch	4921504K03Rik	IQ motif containing H	protein-coding	2.261	1.633	1.112	1.612	1.396	0.859	4.310	3.859	2.992	3.122	3.099	3.090	2.211	3.939	3.571	2.687	1.846	4.072	nan	1.024	0.187	0.787	0.261	0.422	4.197
8524	chr2	113317536	113320115	+	0	NA	intron (NR_035479, intron 2 of 3)	MIRc|SINE|MIR	-8911	NM_001285458	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	2.578	3.392	1.723	1.007	0.332	0.104	4.598	4.010	1.867	1.738	0.684	1.480	5.375	5.321	5.830	5.764	2.813	3.509	5.666	2.264	0.687	6.760	3.610	2.190	4.562
723	chr1	145571546	145576900	+	0	NA	Intergenic	Intergenic	-798802	NM_022881	64214	Mm.253927	NM_022881	ENSMUSG00000026357	Rgs18	-	regulator of G-protein signaling 18	protein-coding	nan	0.523	0.262	2.818	4.968	3.072	6.765	5.115	3.924	4.362	0.778	1.433	7.433	6.082	5.070	7.979	5.830	3.339	0.615	0.595	0.509	0.502	0.795	0.409	3.487
3597	chr12	88151700	88154187	+	0	NA	Intergenic	L1_Mm|LINE|L1	28951	NM_001105254	100039315	Mm.426539	NM_001105254	ENSMUSG00000066027	Gm10436	ENSMUSG00000072907	predicted gene 10436	protein-coding	4.481	4.001	1.709	3.381	1.722	0.886	3.414	2.961	2.417	3.341	2.705	1.316	1.339	3.384	3.348	4.458	3.503	3.132	3.667	3.224	2.581	2.458	5.433	4.392	5.989
9378	chr3	68842914	68851873	+	0	NA	Intergenic	Intergenic	-22193	NM_001167996	68725	Mm.45741	NM_001167996	ENSMUSG00000046999	1110032F04Rik	AI115547	RIKEN cDNA 1110032F04 gene	protein-coding	2.402	8.382	3.978	2.770	2.298	1.710	2.024	1.659	2.559	3.300	6.932	3.352	2.452	2.683	2.829	nan	2.479	3.834	4.779	2.624	2.857	3.462	4.233	4.279	3.290
14900	chr9	21349553	21352770	+	0	NA	intron (NM_152808, intron 20 of 21)	RLTR25B|LTR|ERVK	13333	NM_152808	68682	Mm.148425	NM_152808	ENSMUSG00000057193	Slc44a2	1110028E10Rik|CTL2	solute carrier family 44, member 2	protein-coding	6.544	7.290	2.126	6.255	4.730	4.187	6.453	7.487	3.062	8.496	5.138	2.584	5.709	8.229	6.020	8.230	5.255	5.592	4.378	2.586	4.801	5.054	3.946	5.833	12.490
12601	chr6	113666128	113672595	+	0	NA	intron (NM_172161, intron 3 of 12)	intron (NM_172161, intron 3 of 12)	-27689	NM_001347356	381801	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	4.585	1.213	0.559	2.119	1.619	0.528	6.865	3.318	1.942	2.057	0.798	0.675	4.561	5.058	5.506	9.538	5.569	4.058	0.795	0.640	0.245	1.540	nan	0.369	7.853
11428	chr5	91668823	91675242	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	95268	NR_045383	73452	Mm.396233	NR_045383	ENSMUSG00000101978	1700063O14Rik	-	RIKEN cDNA 1700063O14 gene	ncRNA	2.239	0.412	0.465	1.535	2.670	1.371	2.922	2.384	5.271	5.131	1.645	2.907	3.511	3.148	4.077	2.940	2.725	3.932	0.685	0.372	0.250	0.438	0.463	0.163	1.635
6941	chr17	87151502	87173588	+	0	NA	Intergenic	Intergenic	32397	NR_046016	399626	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	5.461	2.130	0.701	7.145	3.452	1.852	4.607	5.726	nan	5.863	2.514	2.624	4.017	5.861	5.858	7.118	4.377	5.778	1.565	1.080	0.816	1.145	1.711	1.393	6.578
1040	chr1	193898927	193903510	+	0	NA	Intergenic	L1ME1|LINE|L1	321541	NR_040477	74942	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	6.263	4.849	2.000	5.004	1.311	0.684	4.295	3.749	3.682	3.365	2.362	1.931	2.480	3.338	4.581	4.931	4.493	6.617	1.426	1.399	0.800	1.335	nan	1.706	nan
13355	chr7	86986723	86993029	+	0	NA	Intergenic	L1Md_A|LINE|L1	-6589	NM_001105190	621430	Mm.469903	NM_001105190	ENSMUSG00000090362	Vmn2r79	EG621430	vomeronasal 2, receptor 79	protein-coding	2.097	1.147	0.662	2.868	1.602	0.704	1.536	2.331	nan	2.433	1.209	0.886	1.668	1.782	1.836	nan	nan	nan	4.295	6.043	5.642	7.126	3.550	3.036	nan
8232	chr2	49210649	49212086	+	0	NA	intron (NM_029924, intron 6 of 16)	Lx8b|LINE|L1	-34533	NM_001290656	109241	Mm.440436	NM_029924	ENSMUSG00000036792	Mbd5	9430004D19Rik|AA536666|AI426407|C030040A15Rik|Gm1630|OTTMUSG00000012483	methyl-CpG binding domain protein 5	protein-coding	1.401	0.402	0.310	1.986	1.901	0.496	1.211	1.395	1.446	2.816	1.375	0.425	1.778	4.641	1.343	3.827	0.817	1.688	1.654	0.325	0.171	1.989	1.912	0.936	0.639
12061	chr6	15133858	15138787	+	0	NA	intron (NM_053242, intron 3 of 18)	B2_Mm2|SINE|B2	-49184	NM_212435	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	3.017	nan	0.527	1.879	3.598	1.278	3.778	1.098	nan	2.017	0.418	0.851	7.518	4.124	4.129	3.329	6.954	6.436	3.740	0.628	0.274	1.671	4.999	2.717	1.819
5766	chr16	8686497	8691741	+	0	NA	3' UTR (NM_001003918, exon 31 of 31)	3' UTR (NM_001003918, exon 31 of 31)	8349	NM_001324517	436336	Mm.357666	NM_001324517		Gm5767	EG436336	predicted gene 5767	protein-coding	nan	1.282	1.030	0.878	0.282	0.119	nan	1.090	0.731	0.489	0.989	0.582	0.539	0.524	0.610	1.145	0.488	0.946	1.300	0.901	0.639	4.480	0.610	0.520	1.419
2182	chr11	52209489	52210962	+	0	NA	Intergenic	Intergenic	3762	NM_207253	276865	Mm.377871	NM_207253	ENSMUSG00000060170	Olfr1371	GA_x6K02T2QP88-3214035-3214970|MOR256-58	olfactory receptor 1371	protein-coding	8.884	9.217	3.515	8.562	5.309	2.400	7.230	6.683	5.243	8.341	5.860	3.605	5.990	8.411	8.218	10.984	6.714	8.653	5.966	4.990	2.921	6.386	5.961	4.561	11.200
15297	chr9	72930990	72939462	+	0	NA	intron (NM_028116, intron 1 of 2)	(TAAA)n|Simple_repeat|Simple_repeat	9576	NM_028116	72135	Mm.273605	NM_028116	ENSMUSG00000034910	Pygo1	2600014C22Rik	pygopus 1	protein-coding	4.080	2.261	1.266	3.623	1.915	1.093	4.982	4.638	3.483	4.109	6.887	4.091	7.974	7.961	nan	5.756	4.487	4.274	nan	1.817	1.470	1.174	1.689	1.512	11.371
6328	chr17	10507217	10514523	+	0	NA	intron (NM_027032, intron 4 of 4)	intron (NM_027032, intron 4 of 4)	54654	NR_077238	319750	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	8.383	6.430	2.482	9.307	6.137	3.641	7.287	4.685	6.214	14.704	4.515	2.942	6.365	8.496	6.862	8.139	nan	9.412	nan	1.991	2.075	3.578	2.156	3.240	10.330
5988	chr16	31065490	31071116	+	0	NA	intron (NM_198626, intron 1 of 3)	intron (NM_198626, intron 1 of 3)	13129	NM_198626	268880	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	4.534	5.776	1.598	4.398	1.398	0.794	2.546	4.877	3.235	6.292	2.344	0.620	nan	6.096	3.462	6.179	3.253	6.137	1.264	0.750	0.490	0.982	nan	0.632	8.439
15434	chr9	102557843	102560232	+	0	NA	Intergenic	Intergenic	52899	NM_024291	16716	Mm.101692	NM_024291	ENSMUSG00000035606	Ky	CD1|D9Mgc44e|ky	kyphoscoliosis peptidase	protein-coding	4.912	1.065	0.407	3.482	3.247	1.498	4.260	3.391	4.192	4.861	2.559	0.652	3.818	6.376	4.839	5.265	3.525	5.661	0.902	0.722	0.257	0.534	0.880	0.538	6.878
152	chr1	44076747	44077983	+	0	NA	Intergenic	ORR1D1|LTR|ERVL-MaLR	25023	NM_029368	75623	Mm.348017	NM_029368	ENSMUSG00000026049	Tex30	1700029F09Rik|3110030D08Rik	testis expressed 30	protein-coding	5.069	0.545	0.276	1.691	0.672	0.301	2.062	1.443	1.951	2.413	0.961	1.005	3.165	3.985	1.934	2.282	3.822	3.375	nan	0.943	0.526	0.605	0.854	0.371	1.551
10939	chr4	150287756	150290531	+	0	NA	intron (NM_001085492, intron 1 of 22)	B3|SINE|B2	7227	NM_001085492	68703	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	7.086	8.826	3.934	6.468	4.293	2.230	3.630	4.541	5.193	6.357	7.099	4.343	4.997	6.910	6.532	6.384	3.392	6.845	5.470	1.576	1.441	5.672	1.715	1.189	7.808
11465	chr5	96883670	96889711	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	-34582	NR_131152	666266	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	1.137	0.464	0.406	0.431	0.148	0.021	1.206	1.140	0.600	0.419	0.241	0.251	1.439	1.494	2.263	1.110	1.388	0.801	4.487	2.446	1.901	4.936	2.450	1.741	0.310
2931	chr11	108164944	108169521	+	0	NA	intron (NM_011101, intron 3 of 16)	(TTC)n|Simple_repeat|Simple_repeat	170384	NR_106082	102465705		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	3.071	0.970	0.632	nan	4.018	2.733	3.023	4.996	4.025	3.654	0.848	2.342	3.331	5.040	3.863	4.720	3.186	nan	3.129	1.263	1.259	nan	2.723	2.148	3.877
12998	chr7	25233579	25236297	+	0	NA	intron (NM_001031667, intron 2 of 10)	intron (NM_001031667, intron 2 of 10)	2913	NM_001031667	606496	Mm.491101	NM_001031667	ENSMUSG00000057177	Gsk3a	2700086H06Rik	glycogen synthase kinase 3 alpha	protein-coding	4.759	2.836	1.310	2.970	3.497	2.661	2.643	4.548	2.101	2.573	3.046	1.453	3.302	5.801	3.386	1.807	1.650	3.174	1.742	1.950	1.284	1.513	1.325	0.762	5.393
10617	chr4	131965676	131974354	+	0	NA	intron (NM_001128606, intron 11 of 17)	intron (NM_001128606, intron 11 of 17)	48244	NM_001201367	623230	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	4.740	1.253	1.217	3.661	4.501	4.526	3.377	5.336	4.204	3.832	2.059	2.246	4.477	5.290	nan	4.111	3.341	4.520	1.430	1.747	1.946	1.306	1.739	2.215	3.394
862	chr1	172317078	172318211	+	0	NA	exon (NM_080419, exon 3 of 7)	exon (NM_080419, exon 3 of 7)	5277	NM_080419	140559	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	1.637	0.503	0.116	nan	1.849	1.181	3.889	3.456	nan	3.474	1.352	1.654	4.046	4.116	3.162	6.307	2.240	4.083	2.258	0.972	0.554	nan	nan	0.946	4.519
1419	chr10	74529395	74534105	+	0	NA	intron (NM_001142740, intron 25 of 31)	Lx|LINE|L1	-435481	NM_010311	14687	Mm.32595	NM_010311	ENSMUSG00000040009	Gnaz	AI847979|Gz	guanine nucleotide binding protein, alpha z subunit	protein-coding	8.517	1.305	0.954	5.038	6.204	4.400	4.767	6.411	4.542	4.913	2.955	2.529	5.221	7.919	4.604	5.663	5.608	5.887	2.063	2.420	1.576	2.743	3.367	2.174	4.624
15563	chr9	118440319	118442618	+	0	NA	Intergenic	B4A|SINE|B4	11629	NR_040716	71196	Mm.73218	NR_040716	ENSMUSG00000111843	4933432G23Rik	-	RIKEN cDNA 4933432G23 gene	ncRNA	3.306	0.472	0.648	1.582	2.848	1.307	1.860	2.048	2.762	2.876	3.191	3.285	3.925	4.674	1.691	1.850	1.841	2.258	1.647	0.822	0.213	0.656	nan	0.759	3.381
341	chr1	78367652	78368861	+	0	NA	intron (NM_001004173, intron 2 of 4)	intron (NM_001004173, intron 2 of 4)	57910	NM_001004173	433323	Mm.276248	NM_001004173	ENSMUSG00000032908	Sgpp2	SPPase2|Spp2	sphingosine-1-phosphate phosphotase 2	protein-coding	2.569	0.907	0.617	1.577	0.727	0.581	1.818	1.832	1.757	1.558	0.349	0.433	4.023	3.560	2.048	4.495	2.413	2.991	nan	nan	0.424	0.322	nan	0.279	2.356
13932	chr7	151137508	151139046	+	0	NA	Intergenic	Intergenic	5823442	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	3.719	nan	0.507	nan	0.684	0.320	4.503	3.771	nan	2.788	1.443	0.580	4.067	4.568	4.071	3.726	4.816	2.799	0.772	0.697	0.645	1.012	nan	0.297	3.772
6232	chr16	93719798	93724346	+	0	NA	intron (NM_027293, intron 2 of 36)	intron (NM_027293, intron 2 of 36)	10165	NM_027293	70028	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	3.896	0.890	0.572	4.271	3.544	1.825	1.933	5.859	3.939	4.242	0.895	1.269	3.385	5.239	nan	5.038	2.990	4.398	4.857	3.294	2.755	4.713	3.890	3.526	4.255
3586	chr12	87162678	87166613	+	0	NA	TTS (NM_001252556)	TTS (NM_001252556)	-9160	NR_136901	625237	Mm.390529	NR_136901		Gm6566	EG625237	predicted gene 6566	ncRNA	5.567	5.217	1.375	4.204	2.439	1.551	4.405	4.002	2.824	4.362	3.177	1.740	5.258	7.596	6.218	7.417	5.406	5.109	2.918	2.147	1.618	3.097	3.166	2.774	8.359
2189	chr11	53144014	53145279	+	0	NA	intron (NM_177059, intron 7 of 15)	intron (NM_177059, intron 7 of 15)	-24590	NR_046047	790909	Mm.404626	NR_046047	ENSMUSG00000087668	Gm11186	OTTMUSG00000000039	predicted gene 11186	ncRNA	2.106	2.165	1.689	1.954	6.135	4.532	3.901	5.815	4.360	3.082	3.928	6.050	3.109	nan	2.866	1.595	1.754	3.675	nan	1.105	0.957	0.720	0.783	0.791	1.270
15107	chr9	56797764	56799654	+	0	NA	Intergenic	Intergenic	53254	NM_198673	382075	Mm.335177	NM_198673	ENSMUSG00000045620	Odf3l1	BC049697|Gm1116	outer dense fiber of sperm tails 3-like 1	protein-coding	10.596	8.926	6.037	7.823	7.383	6.100	5.934	7.163	6.799	6.622	5.977	4.972	5.635	7.802	6.312	7.131	6.764	7.334	4.273	5.651	6.303	4.071	5.059	6.883	9.594
14590	chr8	111226715	111245352	+	0	NA	intron (NM_009149, intron 1 of 25)	B1_Mur4|SINE|Alu	23169	NM_009149	20340	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	8.580	1.245	0.795	5.806	5.901	3.740	9.433	6.994	3.845	7.609	3.532	2.404	7.462	8.762	6.264	7.045	9.287	5.738	4.350	5.425	5.472	nan	6.148	6.897	10.629
13809	chr7	137701829	137705329	+	0	NA	Intergenic	Intergenic	265905	NR_033611	620016	Mm.388932	NR_033611	ENSMUSG00000100863	Gm12669	OTTMUSG00000007920	glutaredoxin 3 pseudogene	pseudo	2.199	nan	0.660	1.862	2.406	1.676	3.647	2.968	2.623	3.035	0.692	1.642	4.445	5.629	2.892	3.619	4.328	3.352	1.103	1.618	1.373	1.935	0.934	1.014	3.035
14799	chr8	128549549	128551719	+	0	NA	Intergenic	Intergenic	-135020	NM_010578	16412	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|ENSMUSG00000051907|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	5.538	nan	0.301	nan	1.271	0.528	nan	6.050	2.941	2.616	0.898	1.470	5.373	4.834	5.114	8.146	4.801	4.351	nan	1.654	1.243	3.842	1.865	nan	5.928
2287	chr11	60987153	60989581	+	0	NA	Intergenic	ORR1D1|LTR|ERVL-MaLR	-34197	NM_001267593	16515	Mm.4970	NM_010603	ENSMUSG00000042529	Kcnj12	IRK-2|IRK2|Kir2.2|MB-IRK2	potassium inwardly-rectifying channel, subfamily J, member 12	protein-coding	6.723	6.311	2.680	7.099	4.834	3.478	5.480	4.789	3.564	6.405	4.409	3.150	4.040	6.876	5.742	6.865	5.243	5.578	nan	4.352	3.782	4.253	4.106	5.702	7.912
8157	chr2	33261290	33262793	+	0	NA	intron (NM_001290572, intron 7 of 17)	intron (NM_001290572, intron 7 of 17)	46080	NM_011923	26360	Mm.208919	NM_011923	ENSMUSG00000004105	Angptl2	AI593246|AW260363|Arp2	angiopoietin-like 2	protein-coding	3.694	0.998	0.969	3.274	3.390	0.995	2.997	5.661	2.083	3.186	1.530	1.117	2.988	3.846	2.917	4.552	4.971	3.272	0.937	1.000	0.545	0.955	0.780	0.299	3.286
12891	chr6	149134578	149137933	+	0	NA	Intergenic	RLTR13D3A1|LTR|ERVK	-5258	NM_001252096	320204	Mm.274099	NM_177101	ENSMUSG00000039958	Etfbkmt	4833442J19Rik|AI256744|ETFB-KMT|Mettl20	electron transfer flavoprotein beta subunit lysine methyltransferase	protein-coding	8.660	7.790	2.266	7.120	4.967	2.436	7.574	11.175	4.925	5.676	6.961	3.369	13.548	12.946	11.394	12.565	8.834	8.650	3.769	nan	1.481	nan	1.513	1.684	7.557
11391	chr5	88991515	88995804	+	0	NA	intron (NM_001197147, intron 3 of 25)	intron (NM_001197147, intron 3 of 25)	106399	NM_018760	54403	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	4.739	10.454	5.307	5.149	2.946	2.401	3.916	4.419	3.805	7.558	2.942	2.050	5.248	5.862	6.550	6.553	4.821	5.893	3.652	1.619	1.941	4.040	2.421	3.509	7.426
10521	chr4	125875000	125881415	+	0	NA	Intergenic	Intergenic	44103	NR_015560	72395	Mm.112888	NR_015560	ENSMUSG00000085562	2610028E06Rik	BB043107	RIKEN cDNA 2610028E06 gene	ncRNA	7.048	6.842	3.856	6.302	6.166	3.415	6.162	5.935	4.928	6.202	5.036	3.349	5.474	9.059	6.019	7.354	5.528	5.929	4.259	4.492	2.881	4.486	3.930	3.552	6.959
9018	chr2	167328016	167335150	+	0	NA	intron (NM_019835, intron 1 of 8)	intron (NM_019835, intron 1 of 8)	17595	NM_019835	56336	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	8.451	10.169	4.127	7.904	6.607	5.489	7.079	7.166	4.423	6.797	2.331	1.979	6.628	7.649	6.931	8.783	6.664	7.644	3.851	2.435	3.047	3.870	2.569	3.128	12.799
12050	chr6	8781911	8784354	+	0	NA	Intergenic	MTEb|LTR|ERVL-MaLR	-4648	NM_010492	15893	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	1.684	0.635	0.521	0.563	1.577	0.815	4.712	3.809	2.110	2.158	0.269	1.477	3.218	2.254	4.330	4.191	3.428	2.271	5.958	6.053	3.789	4.897	11.174	9.040	nan
8134	chr2	32291363	32297469	+	0	NA	intron (NM_133852, intron 3 of 26)	intron (NM_133852, intron 3 of 26)	6163	NM_001080968	99412	Mm.106376	NM_133852	ENSMUSG00000002546	Golga2	AW555139|GM130|mKIAA4150	golgi autoantigen, golgin subfamily a, 2	protein-coding	7.715	2.816	1.845	5.011	5.954	4.578	7.101	10.535	5.639	4.531	2.888	2.906	7.954	7.088	7.523	9.601	7.386	6.731	1.627	1.447	1.545	1.589	1.788	1.784	7.232
12636	chr6	117875547	117876944	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	13168	NM_001001792	22685	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	2.493	1.208	1.658	2.307	3.371	2.898	4.753	1.799	2.077	1.906	0.505	0.246	5.482	6.091	2.979	3.525	2.919	2.553	0.929	0.671	0.815	0.860	nan	1.048	3.137
10479	chr4	122609279	122611861	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-78689	NM_023865	77432	Mm.491436	NM_023865	ENSMUSG00000023263	9530002B09Rik	Aump|Vpp1|Vppl	RIKEN cDNA 9530002B09 gene	protein-coding	2.102	12.317	6.309	1.299	0.936	0.807	1.075	1.185	1.457	1.528	1.233	1.378	0.531	0.607	1.212	nan	1.106	1.186	3.365	5.669	4.357	3.650	3.269	1.856	1.317
10400	chr4	115845895	115851593	+	0	NA	intron (NM_021461, intron 2 of 12)	intron (NM_021461, intron 2 of 12)	9546	NM_001285487	17346	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	10.777	2.414	1.262	6.569	5.593	3.095	8.136	9.494	4.588	5.505	3.964	3.006	6.546	9.711	8.129	8.936	6.635	9.248	7.305	6.186	3.718	8.937	6.897	4.772	13.905
15324	chr9	76891224	76898432	+	0	NA	Intergenic	Intergenic	150953	NR_136923	26944	Mm.23199	NM_012033	ENSMUSG00000032357	Tinag	AI452335|TIN-ag	tubulointerstitial nephritis antigen	protein-coding	2.949	0.527	0.265	1.783	0.874	0.308	3.748	2.224	3.583	2.721	1.764	1.047	5.392	3.257	3.336	5.820	3.433	4.536	0.847	nan	0.359	0.868	0.822	0.569	nan
10028	chr4	44115643	44119335	+	0	NA	Intergenic	Intergenic	-4404	NR_040414	623796	Mm.490409	NR_040414	ENSMUSG00000084274	Gm12504	OTTMUSG00000007209	prothymosin alpha pseudogene	pseudo	4.081	2.147	0.738	1.890	0.697	0.600	1.703	2.401	2.502	2.269	6.205	1.905	1.673	1.868	2.454	3.469	2.604	2.267	7.055	2.392	1.747	nan	4.103	3.032	4.824
12856	chr6	146525340	146527663	+	0	NA	Intergenic	B1_Mur2|SINE|Alu	-24278	NM_019923	16439	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	8.820	12.856	4.186	nan	4.606	2.286	9.400	9.385	5.513	9.387	6.837	4.010	nan	10.743	10.286	12.980	8.111	10.066	5.099	nan	2.552	6.256	4.300	3.260	12.988
5850	chr16	18720001	18721872	+	0	NA	Intergenic	Intergenic	-55911	NM_013805	12741	Mm.22768	NM_013805	ENSMUSG00000041378	Cldn5	AI854493|MBEC1|Tmvcf	claudin 5	protein-coding	2.343	0.876	0.429	4.802	1.575	1.023	1.928	1.353	1.769	2.015	0.998	0.535	1.062	1.368	1.355	2.334	1.865	3.671	1.074	0.768	0.876	1.243	0.387	0.515	2.162
7902	chr19	57315325	57316548	+	0	NA	Intergenic	Intergenic	41976	NR_045319	78120	Mm.445892	NR_045319		4930449E18Rik	-	RIKEN cDNA 4930449E18 gene	ncRNA	3.850	nan	0.944	3.355	1.621	1.498	0.935	3.031	3.260	3.071	3.154	2.053	2.205	3.331	nan	4.487	3.920	4.081	1.106	0.862	1.380	1.439	1.870	1.215	nan
7198	chr18	39644450	39651935	+	0	NA	Intergenic	Intergenic	-125305	NM_011033	18459	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	7.443	8.792	3.014	8.312	3.360	2.445	5.714	7.888	4.450	10.061	3.742	2.993	6.438	6.340	6.266	nan	5.830	8.046	5.083	2.137	2.850	4.164	3.191	4.640	11.321
15859	chrX	160514158	160515251	+	0	NA	intron (NM_172783, intron 1 of 32)	intron (NM_172783, intron 1 of 32)	12270	NM_001177878	110094	Mm.350712	NM_172783	ENSMUSG00000031295	Phka2	6330505C01Rik|D330034O08|Phk	phosphorylase kinase alpha 2	protein-coding	4.280	6.429	2.940	5.415	2.637	1.871	3.436	3.821	2.740	5.120	3.375	1.843	4.770	6.336	4.031	5.127	3.516	4.225	2.736	2.169	2.897	3.222	2.698	2.274	7.049
6975	chr18	3628029	3629427	+	0	NA	Intergenic	Intergenic	120771	NM_026505	68010	Mm.284863	NM_026505	ENSMUSG00000024232	Bambi	2610003H06Rik	BMP and activin membrane-bound inhibitor	protein-coding	3.538	0.455	0.430	1.074	1.737	0.615	2.639	2.922	2.587	1.559	0.697	0.428	3.518	3.853	3.172	3.530	2.068	3.322	0.629	0.677	0.632	0.737	1.031	0.517	3.376
10132	chr4	59449399	59452112	+	0	NA	Intergenic	Intergenic	-12122	NM_001163288	634731	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528|OTTMUSG00000007332	sushi domain containing 1	protein-coding	5.684	8.485	2.283	3.853	2.798	1.188	nan	3.237	3.168	5.363	5.747	2.433	2.005	3.580	4.271	5.125	2.719	5.473	nan	3.541	2.844	5.566	6.002	5.435	11.004
9344	chr3	60275018	60287577	+	0	NA	Intergenic	Intergenic	-191533	NM_001253713	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	3.334	8.580	5.733	nan	1.664	0.998	1.099	0.956	1.864	1.826	1.046	0.775	0.878	1.405	nan	nan	1.878	nan	0.886	1.310	0.973	0.441	0.618	0.365	0.717
4824	chr14	71047273	71050184	+	0	NA	Intergenic	Intergenic	158621	NM_001302094	14586	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	4.281	0.907	0.337	0.521	1.705	1.319	4.914	3.502	2.595	4.403	0.380	0.673	2.613	5.670	2.958	5.504	3.023	4.201	0.411	nan	0.379	0.510	0.726	0.401	1.088
309	chr1	74480198	74485391	+	0	NA	intron (NM_176972, intron 8 of 25)	MLT1A|LTR|ERVL-MaLR	23027	NM_001310662	319651	Mm.66568	NM_176972	ENSMUSG00000033364	Usp37	4932415L06Rik|C330008N13Rik	ubiquitin specific peptidase 37	protein-coding	4.464	1.861	0.885	2.217	1.529	1.004	3.981	4.527	3.344	2.321	2.575	2.867	3.190	4.068	4.256	5.992	3.192	4.185	6.229	nan	1.648	3.568	nan	2.872	nan
15632	chr9	122994915	123003146	+	0	NA	intron (NM_010620, intron 20 of 34)	intron (NM_010620, intron 20 of 34)	-22296	NM_025339	66079	Mm.482265	NM_025339	ENSMUSG00000066233	Tmem42	0610027O18Rik|4933429E06Rik|AV003444|D9Ertd662e	transmembrane protein 42	protein-coding	6.776	1.133	0.551	5.266	3.018	1.736	6.200	5.947	9.471	12.771	2.245	1.217	9.985	10.297	8.888	11.448	6.053	11.582	0.897	0.797	0.807	1.104	nan	0.474	14.646
11501	chr5	104148848	104152293	+	0	NA	Intergenic	Intergenic	-20133	NM_010080	666279	Mm.319832	NM_010080	ENSMUSG00000053268	Dspp	Dmp2|Dmp3|Dpp|Dsp	dentin sialophosphoprotein	protein-coding	5.699	4.344	2.701	3.075	4.662	3.620	2.620	2.082	3.514	3.148	2.067	1.084	2.829	4.442	2.981	3.857	3.663	3.977	nan	1.386	1.268	0.396	0.837	0.858	3.878
14205	chr8	47289769	47297290	+	0	NA	intron (NM_175162, intron 1 of 4)	Lx9|LINE|L1	-4127	NM_001114311	71069	Mm.23973	NM_175162	ENSMUSG00000038143	Stox2	4933409N07Rik|AI449080|AI835114|mKIAA1392	storkhead box 2	protein-coding	2.564	2.990	1.201	2.432	1.350	0.759	1.944	3.086	1.396	2.330	1.793	0.946	2.264	2.521	2.671	3.349	2.298	2.692	3.553	3.472	2.555	7.268	2.174	2.123	3.730
8672	chr2	131034040	131036807	+	0	NA	Intergenic	RMER4A|LTR|ERVK	4975	NR_105969	102465606		NR_105969	ENSMUSG00000098686	Mir6973b	Gm27815|mmu-mir-6973b	microRNA 6973b	ncRNA	10.134	7.281	2.091	10.180	5.970	3.596	7.768	11.939	7.487	9.069	8.074	4.458	9.763	11.208	9.899	12.697	9.069	9.880	nan	2.395	2.489	6.550	2.922	2.892	13.642
7485	chr19	5016075	5019651	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	-6143	NM_007854	13340	Mm.4930	NM_007854	ENSMUSG00000024891	Slc29a2	Der12|Ent2|Hnp36	solute carrier family 29 (nucleoside transporters), member 2	protein-coding	3.056	0.856	0.590	1.841	1.226	0.661	3.521	4.730	nan	2.022	6.506	2.486	2.522	3.874	2.171	nan	1.809	2.943	0.557	0.449	0.377	1.354	0.445	0.400	3.067
10351	chr4	106680703	106692245	+	0	NA	intron (NM_001126487, intron 21 of 23)	intron (NM_001126487, intron 21 of 23)	-7530	NM_028209	72354	Mm.25806	NM_028209	ENSMUSG00000025413	Ttc4	2810002P21Rik|AF007005|L62	tetratricopeptide repeat domain 4	protein-coding	0.967	1.276	0.477	1.443	0.604	0.316	1.032	nan	1.141	1.106	1.463	0.758	1.002	0.973	1.307	1.760	0.550	nan	1.662	1.910	1.191	7.088	0.659	0.466	1.508
9404	chr3	85171971	85173732	+	0	NA	Intergenic	Intergenic	-144668	NR_040542	73283	Mm.489084	NR_040542	ENSMUSG00000099995	1700036G14Rik	-	RIKEN cDNA 1700036G14 gene	ncRNA	0.757	0.518	0.150	1.430	0.285	0.145	0.989	0.725	1.220	1.105	5.299	2.152	0.661	0.760	0.781	nan	0.600	1.265	nan	0.426	0.181	1.442	1.645	0.843	0.807
824	chr1	164988006	164991700	+	0	NA	Intergenic	Intergenic	-54343	NM_008510	16963	Mm.190	NM_008510	ENSMUSG00000026573	Xcl1	AI661682|ATAC|LTN|Lptn|SCM-1|SCM-1a|Scyc1	chemokine (C motif) ligand 1	protein-coding	2.844	0.357	0.320	3.553	2.219	1.267	1.257	4.157	nan	3.817	0.643	0.592	3.389	6.505	nan	2.686	3.030	3.071	0.542	0.537	0.254	nan	nan	0.121	nan
6369	chr17	21081263	21083905	+	0	NA	Intergenic	Intergenic	-8624	NR_137274	328766	Mm.50947	NR_137274	ENSMUSG00000102080	Gm5092	4933430A09	predicted gene 5092	ncRNA	8.905	9.648	4.412	6.725	4.707	1.461	7.559	nan	5.294	7.213	5.831	2.388	5.762	9.629	8.013	10.542	5.850	6.815	4.499	3.273	2.085	5.971	3.209	2.840	12.091
4747	chr14	63740867	63744984	+	0	NA	intron (NM_173393, intron 1 of 2)	intron (NM_173393, intron 1 of 2)	15736	NR_030611	100124452		NR_030611	ENSMUSG00000076049	Mir598	Mirn598|mir-598|mmu-mir-598	microRNA 598	ncRNA	8.345	7.474	2.357	7.333	5.182	3.251	5.537	10.470	5.452	8.136	5.424	3.462	6.778	9.134	9.603	9.558	4.438	7.636	3.457	nan	1.544	3.901	2.277	2.161	11.952
1148	chr10	19921599	19923722	+	0	NA	Intergenic	MLT1F2|LTR|ERVL-MaLR	-11866	NM_008580	26408	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	2.396	0.711	0.332	2.877	1.814	0.303	1.524	3.374	2.112	2.513	7.296	1.276	1.588	nan	2.771	1.990	2.034	2.670	1.132	0.562	0.564	1.215	0.581	0.298	1.562
254	chr1	64760812	64763629	+	0	NA	Intergenic	Intergenic	-24470	NM_022721	14367	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	2.867	1.164	0.518	1.428	1.298	0.610	2.648	1.976	2.015	1.387	0.962	0.963	2.041	nan	2.657	3.482	2.568	2.901	0.591	0.885	0.479	0.941	0.705	0.288	1.940
2386	chr11	69777207	69780937	+	0	NA	exon (NM_029348, exon 4 of 4)	exon (NM_029348, exon 4 of 4)	13160	NM_029348	75580	Mm.426361	NM_029348	ENSMUSG00000018750	Zbtb4	2310026P19Rik|9230111I22Rik|mKIAA1538	zinc finger and BTB domain containing 4	protein-coding	6.055	1.654	0.493	6.455	4.652	3.163	8.148	9.032	4.977	7.210	6.622	5.069	7.110	8.709	9.076	10.063	6.375	8.536	6.661	3.562	3.179	7.449	5.521	6.151	nan
11049	chr5	20722029	20726053	+	0	NA	Intergenic	ORR1D1|LTR|ERVL-MaLR	158083	NM_172992	68770	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	3.972	3.300	1.170	2.353	3.264	1.876	4.323	2.642	2.730	3.261	1.696	1.140	2.702	3.824	4.829	4.824	2.776	4.124	1.493	1.037	1.036	2.300	1.390	1.068	4.080
1321	chr10	59060737	59062007	+	0	NA	intron (NM_172788, intron 4 of 9)	ORR1D2|LTR|ERVL-MaLR	160475	NM_001024911	103080	Mm.346842	NM_001024910	ENSMUSG00000019917	Sept10	4921515A04Rik|9430099J10Rik|AA408298|AI874685	septin 10	protein-coding	1.532	0.534	0.691	0.396	1.336	1.125	0.556	0.954	1.198	1.772	0.229	1.089	0.802	3.747	1.099	1.309	1.636	1.070	nan	0.878	0.702	0.338	1.385	0.374	nan
11313	chr5	66950524	66952111	+	0	NA	intron (NM_001001980, intron 3 of 25)	MLT1E3|LTR|ERVL-MaLR	-17099	NM_001256122	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding	3.743	0.715	0.314	2.923	2.761	0.739	1.134	1.814	2.234	2.184	3.293	1.701	1.539	2.944	2.142	2.212	1.570	2.746	5.094	2.538	1.403	5.654	3.432	2.053	2.700
12085	chr6	22750429	22755307	+	0	NA	Intergenic	L1Md_Gf|LINE|L1	-122634	NM_001311064	19283	Mm.41639	NM_011219	ENSMUSG00000068748	Ptprz1	AI850339|DSD-1-PG|PTPbeta|PTPzeta|Ptprz|Ptpz|R-PTP-zeta|RPTPz|Rptpbeta	protein tyrosine phosphatase, receptor type Z, polypeptide 1	protein-coding	2.825	nan	0.373	1.001	0.640	0.440	3.232	4.502	nan	2.175	2.215	0.716	3.160	2.219	5.004	nan	2.869	2.530	4.997	2.614	1.860	7.852	4.941	4.220	1.828
4214	chr13	63211737	63216733	+	0	NA	intron (NM_001289926, intron 11 of 15)	Charlie5|DNA|hAT-Charlie	-25794	NR_110520	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	3.503	1.911	0.777	5.156	1.601	0.816	1.702	1.560	2.875	2.908	3.051	1.682	2.738	3.199	2.832	nan	1.374	4.216	3.134	1.529	0.630	3.840	1.523	0.781	2.974
3945	chr13	34200716	34202450	+	0	NA	intron (NM_001033167, intron 5 of 10)	intron (NM_001033167, intron 5 of 10)	38619	NM_001110515	69666	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	3.048	nan	1.042	2.091	3.016	1.232	nan	5.059	nan	2.736	2.563	1.737	2.168	5.010	2.761	3.512	1.386	3.263	0.916	0.485	0.334	0.635	0.560	0.360	2.939
7457	chr19	3664695	3671554	+	0	NA	intron (NM_008513, intron 1 of 22)	intron (NM_008513, intron 1 of 22)	18440	NM_008513	16973	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	5.099	1.775	0.873	5.972	2.107	1.081	8.968	8.740	4.986	4.273	8.158	2.984	4.718	5.963	6.527	nan	5.701	6.210	1.394	1.770	1.490	5.121	1.783	1.190	9.031
6615	chr17	37087686	37089930	+	0	NA	Intergenic	Intergenic	-2572	NM_146477	258469	Mm.271392	NM_146477	ENSMUSG00000056600	Olfr90	MOR256-21|bM573K1.2	olfactory receptor 90	protein-coding	6.697	6.371	4.643	4.040	6.934	2.659	5.561	5.096	3.585	3.639	3.357	2.268	3.432	7.308	3.731	6.167	6.122	3.654	3.815	5.029	2.675	3.036	5.249	3.724	4.736
15577	chr9	118858764	118863280	+	0	NA	intron (NM_001113514, intron 9 of 13)	intron (NM_001113514, intron 9 of 13)	-65514	NM_133710	69274	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	5.500	0.898	0.537	5.024	3.237	2.042	4.089	4.509	3.562	4.707	1.570	0.904	3.970	6.157	3.839	5.662	3.080	6.860	0.444	0.935	0.439	0.709	nan	0.477	6.891
8179	chr2	35111467	35113853	+	0	NA	intron (NM_012018, intron 2 of 43)	RSINE1|SINE|B4	3168	NM_012018	26920	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	4.786	5.123	1.541	4.855	1.500	0.617	2.605	3.563	3.267	4.139	2.913	1.401	3.234	5.686	4.084	5.581	1.534	5.733	2.524	0.969	0.699	4.143	1.433	1.119	8.646
14448	chr8	90911126	90919469	+	0	NA	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	-16952	NM_001310530	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	4.290	0.537	0.423	3.896	3.570	2.042	1.906	1.992	nan	7.433	0.538	0.395	7.408	8.062	4.458	5.518	4.215	4.599	nan	1.167	0.973	1.150	0.325	0.344	5.818
6496	chr17	29277061	29282675	+	0	NA	intron (NM_030561, intron 2 of 8)	L1MB8|LINE|L1	11080	NM_030561	80748	Mm.290116	NM_030561	ENSMUSG00000052712	BC004004	2400006G15Rik	cDNA sequence BC004004	protein-coding	0.409	9.326	3.455	0.602	0.170	0.198	0.431	0.516	0.408	0.583	0.428	0.305	0.373	0.272	0.475	nan	0.337	0.620	1.785	1.123	1.115	1.886	0.807	0.693	0.896
3570	chr12	86524843	86526315	+	0	NA	Intergenic	Intergenic	103935	NM_011934	26380	Mm.235550	NM_011934	ENSMUSG00000021255	Esrrb	Err2|Errb|Estrrb|Nr3b2	estrogen related receptor, beta	protein-coding	2.624	0.766	0.700	1.491	1.842	0.746	2.910	2.808	1.201	1.851	1.201	0.257	4.306	4.029	2.523	4.440	3.058	1.565	1.563	1.044	1.709	2.123	1.424	1.091	3.752
9083	chr2	174338161	174343642	+	0	NA	intron (NM_001310085, intron 4 of 12)	intron (NM_001310085, intron 4 of 12)	10812	NM_001077510	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	2.599	3.681	1.357	1.489	2.014	1.115	1.654	1.276	2.815	4.258	0.856	0.487	4.755	5.609	2.248	3.691	3.611	nan	0.626	0.432	0.308	0.669	0.367	0.225	nan
851	chr1	168930625	168932713	+	0	NA	Intergenic	L1Md_F2|LINE|L1	441026	NR_105766	102465178		NR_105766	ENSMUSG00000098407	Mir6348	Gm27412|mmu-mir-6348	microRNA 6348	ncRNA	4.753	3.463	0.589	5.605	1.959	1.119	1.740	1.696	nan	6.158	2.214	1.325	2.420	2.479	2.391	2.353	1.546	3.520	1.065	1.124	1.164	nan	nan	1.691	6.171
2296	chr11	61427517	61434688	+	0	NA	Intergenic	L1MB3|LINE|L1	22890	NM_009548	22671	Mm.89201	NM_009548	ENSMUSG00000010086	Rnf112	ZNF179|Zfp179|bfp|neurolastin	ring finger protein 112	protein-coding	5.362	3.191	1.743	5.767	5.098	3.424	3.086	2.341	2.630	3.303	2.432	3.167	2.543	4.143	2.101	3.267	2.660	4.221	nan	2.418	2.017	1.840	1.715	1.486	nan
12150	chr6	34657561	34669702	+	0	NA	intron (NM_001347100, intron 2 of 13)	intron (NM_001347100, intron 2 of 13)	-45813	NM_145575	109624	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	6.030	0.816	0.460	3.466	3.202	1.500	6.656	8.791	3.294	3.985	3.492	0.786	6.172	9.986	9.317	9.274	5.257	nan	nan	1.379	0.823	nan	nan	0.612	8.439
4964	chr14	120721923	120726861	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	-186802	NM_023579	70572	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5	importin 5	protein-coding	4.900	1.608	1.158	3.237	5.369	3.423	3.616	5.833	3.426	3.268	4.982	2.577	3.865	6.015	4.266	3.574	1.861	4.489	2.428	1.434	0.978	1.469	1.543	1.306	3.553
1811	chr10	121037972	121042916	+	0	NA	intron (NM_011915, intron 2 of 9)	intron (NM_011915, intron 2 of 9)	6440	NM_011915	24117	Mm.32831	NM_011915	ENSMUSG00000020218	Wif1	AW107799|WIF-1	Wnt inhibitory factor 1	protein-coding	4.365	0.935	0.289	2.919	1.840	1.675	5.421	2.830	3.653	3.875	0.434	0.508	5.758	5.807	4.558	5.869	3.799	4.812	1.266	1.076	0.641	1.798	0.587	0.519	5.986
13904	chr7	149570925	149586181	+	0	NA	Intergenic	Intergenic	4263718	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	6.808	nan	1.098	4.941	3.653	1.914	4.484	6.933	nan	4.083	5.975	2.277	3.345	5.969	5.233	5.410	3.454	4.689	1.180	1.634	1.067	1.260	nan	0.864	nan
5427	chr15	79225730	79227854	+	0	NA	Intergenic	Intergenic	-2381	NM_008837	18693	Mm.259464	NM_008837	ENSMUSG00000068206	Pick1	Prkcabp	protein interacting with C kinase 1	protein-coding	4.270	3.147	1.396	7.121	1.898	1.232	5.662	10.197	4.064	4.125	nan	1.394	6.129	5.979	6.057	6.813	4.058	5.371	1.312	1.080	0.829	nan	0.505	0.296	6.128
4412	chr13	112058089	112060837	+	0	NA	Intergenic	MTC|LTR|ERVL-MaLR	191527	NR_130345	102636620	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	OTTMUSG00000020187	predicted gene 15326	ncRNA	3.197	nan	0.521	2.759	2.032	0.895	5.383	1.833	nan	2.734	1.670	0.736	4.078	3.589	2.619	4.541	3.446	nan	0.628	0.937	0.320	nan	0.867	0.293	3.209
9975	chr4	34829455	34830514	+	0	NA	intron (NM_013889, intron 4 of 7)	L1Md_A|LINE|L1	-51618	NM_025471	66291	Mm.28071	NM_025471	ENSMUSG00000028295	Smim8	1810030N24Rik|2810406B13Rik	small integral membrane protein 8	protein-coding	9.635	15.975	4.415	11.557	6.189	5.005	8.480	9.785	5.921	27.060	9.095	5.768	8.884	9.823	10.575	12.521	5.668	11.364	8.856	2.220	6.266	8.096	4.399	7.834	24.464
94	chr1	36594489	36597022	+	0	NA	intron (NM_001126046, intron 10 of 14)	intron (NM_001126046, intron 10 of 14)	-2423	NM_027957	381337	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	4.768	0.725	0.293	4.643	5.162	3.096	3.265	5.064	3.490	3.861	0.828	0.877	4.013	5.978	4.996	6.383	4.518	4.592	4.103	2.740	2.234	5.488	2.779	2.355	5.181
10000	chr4	40893733	40896573	+	0	NA	Intergenic	ORR1A2|LTR|ERVL-MaLR	-24903	NM_011463	20731	Mm.25246	NM_011463	ENSMUSG00000028415	Spink4	MPGC60	serine peptidase inhibitor, Kazal type 4	protein-coding	8.518	7.261	2.552	6.083	5.730	2.619	6.116	7.459	3.997	8.767	6.591	3.620	5.474	8.492	7.327	7.277	4.760	7.039	4.817	4.307	1.769	4.056	4.800	3.118	9.608
568	chr1	129647390	129648995	+	0	NA	intron (NM_172485, intron 5 of 27)	Lx9|LINE|L1	374888	NM_172485	210417	Mm.380518	NM_172485	ENSMUSG00000042581	Thsd7b	1700074E13Rik|B930082A18|D130067I03Rik	thrombospondin, type I, domain containing 7B	protein-coding	7.624	nan	0.416	1.454	0.998	0.895	2.518	3.743	2.928	4.449	0.658	0.505	4.951	2.681	4.035	7.313	3.932	4.883	nan	1.009	0.511	1.271	1.030	0.938	4.555
2668	chr11	94870386	94872906	+	0	NA	Intergenic	Intergenic	-22053	NM_001205037	432591	Mm.370372	NM_001205037		Gm11544	OTTMUSG00000002042	predicted gene 11544	protein-coding	3.055	3.983	2.039	3.781	2.238	1.699	3.823	3.124	1.756	3.371	1.550	1.813	2.500	3.803	4.507	4.248	3.614	2.781	5.661	3.835	3.707	5.348	5.317	4.710	5.386
2863	chr11	104488366	104493896	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-48840	NM_001081045	76719	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	2.048	13.756	9.404	nan	2.234	1.550	1.051	1.014	nan	2.107	1.307	1.081	0.546	1.195	0.704	1.207	1.067	nan	1.166	1.072	1.319	nan	1.193	1.101	1.092
8404	chr2	84354219	84367007	+	0	NA	intron (NM_018782, intron 9 of 15)	intron (NM_018782, intron 9 of 15)	64653	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	5.872	0.946	0.617	4.137	3.305	2.056	5.229	4.388	6.143	6.938	4.658	2.856	5.500	6.453	4.925	7.869	5.971	8.172	0.822	1.463	0.859	2.681	0.498	0.439	4.396
10197	chr4	80556626	80558537	+	0	NA	Intergenic	Intergenic	-276632	NM_031202	22178	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	9.887	2.084	0.323	9.808	3.483	1.263	7.613	8.100	6.829	11.113	6.528	5.003	8.930	8.508	11.203	13.050	6.424	11.322	9.871	4.749	4.257	11.466	7.105	7.196	20.350
6474	chr17	28378086	28380024	+	0	NA	Intergenic	B4|SINE|B4	-13912	NM_021478	22157	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	3.176	1.503	0.384	1.988	1.393	0.871	3.904	2.432	1.910	2.059	1.933	1.023	2.004	4.008	3.514	3.884	1.789	3.538	2.308	0.810	0.696	1.778	1.619	0.659	6.304
4334	chr13	101295285	101297509	+	0	NA	Intergenic	Looper|DNA|PiggyBac	42078	NR_045846	71174	Mm.399537	NR_045846	ENSMUSG00000100733	4933416M06Rik	-	RIKEN cDNA 4933416M06 gene	ncRNA	3.927	0.447	0.372	1.987	2.042	1.408	6.711	5.552	1.676	1.903	1.614	1.058	3.529	5.312	4.614	4.738	4.334	2.559	0.464	0.855	0.824	0.671	0.991	0.772	4.478
14485	chr8	96818379	96821879	+	0	NA	Intergenic	L1_Mus4|LINE|L1	-274156	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	5.590	0.888	0.127	3.729	4.059	2.294	3.706	2.631	4.178	5.416	0.890	0.660	6.204	9.237	6.418	7.509	7.385	5.571	0.529	0.577	0.315	0.991	0.519	0.289	8.317
11124	chr5	31998492	32002618	+	0	NA	intron (NM_144541, intron 7 of 11)	intron (NM_144541, intron 7 of 11)	-135917	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	7.017	6.763	2.954	nan	6.309	2.682	5.631	6.574	5.531	7.385	6.535	3.851	4.683	7.702	6.544	6.742	4.512	5.944	3.969	2.596	2.331	4.563	3.532	2.994	6.311
8945	chr2	163425278	163426721	+	0	NA	Intergenic	Lx9|LINE|L1	-6529	NM_025699	66680	Mm.25119	NM_025699	ENSMUSG00000035399	Oser1	3230401D17Rik|AI256769|Perit1	oxidative stress responsive serine rich 1	protein-coding	3.742	7.168	5.290	3.395	2.714	1.783	2.072	2.630	2.817	2.712	1.337	0.937	4.023	4.736	2.719	2.329	2.111	3.150	nan	1.011	0.951	1.777	0.683	0.856	1.367
5086	chr15	27846297	27856262	+	0	NA	intron (NM_001081302, intron 14 of 56)	intron (NM_001081302, intron 14 of 56)	-169737	NM_001242423	223433	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	1.475	1.466	0.787	1.205	0.886	0.469	1.049	1.369	0.982	0.769	0.842	0.682	1.088	0.893	1.529	1.444	1.085	1.546	3.240	2.167	1.687	5.413	1.848	1.507	1.491
15422	chr9	100365528	100373089	+	0	NA	Intergenic	Intergenic	117165	NM_001033543	213208	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	3.461	1.410	0.998	3.249	1.335	0.762	3.696	7.641	3.098	4.342	3.854	1.430	3.879	5.734	4.466	5.360	2.350	3.928	1.249	1.727	1.319	2.268	0.792	0.525	6.330
10527	chr4	125935850	125940645	+	0	NA	Intergenic	RLTR28|LTR|ERVL	-15937	NR_015560	72395	Mm.112888	NR_015560	ENSMUSG00000085562	2610028E06Rik	BB043107	RIKEN cDNA 2610028E06 gene	ncRNA	9.028	9.837	3.358	9.590	5.538	2.814	5.047	5.915	5.014	5.977	5.624	2.939	5.030	8.650	6.959	7.317	4.225	7.617	2.454	2.172	2.049	3.363	1.896	1.644	11.144
12200	chr6	47569386	47573194	+	0	NA	intron (NM_001146689, intron 3 of 19)	intron (NM_001146689, intron 3 of 19)	23740	NM_007971	14056	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	1.525	4.821	5.578	0.556	1.690	1.670	1.685	0.496	0.588	0.767	0.427	0.503	0.464	1.771	0.981	0.983	1.069	nan	nan	0.667	0.765	0.269	0.708	0.589	0.799
13638	chr7	120126150	120127610	+	0	NA	Intergenic	Intergenic	18411	NM_011775	22787	Mm.6510	NM_011775	ENSMUSG00000030911	Zp2	Zp-2	zona pellucida glycoprotein 2	protein-coding	4.129	0.293	0.599	1.979	1.512	0.701	5.009	4.988	2.336	1.898	3.119	0.808	4.561	nan	3.057	3.954	4.284	2.973	0.947	0.576	0.577	0.802	1.128	0.600	3.966
10007	chr4	41572658	41588215	+	0	NA	intron (NM_175138, intron 1 of 19)	intron (NM_175138, intron 1 of 19)	10642	NM_175138	68922	Mm.79127	NM_175138	ENSMUSG00000061322	Dnaic1	1110066F04Rik|BB124644|Dnai1|b2b1526Clo	dynein, axonemal, intermediate chain 1	protein-coding	nan	2.364	0.637	2.175	0.585	0.254	0.460	0.618	1.126	1.356	0.484	1.581	0.347	0.751	0.751	nan	0.453	nan	8.081	3.265	1.961	7.836	4.287	2.688	1.309
15513	chr9	108959589	108962599	+	0	NA	exon (NM_007738, exon 21 of 118)	exon (NM_007738, exon 21 of 118)	7349	NM_007738	12836	Mm.6200	NM_007738	ENSMUSG00000025650	Col7a1	AW209154	collagen, type VII, alpha 1	protein-coding	7.043	19.000	4.902	7.495	3.254	0.704	3.185	4.496	nan	4.542	3.851	2.085	3.029	5.285	5.588	6.347	3.438	5.329	2.145	1.542	1.009	2.315	1.853	0.825	9.984
14519	chr8	107748368	107753375	+	0	NA	Intergenic	Intergenic	-162389	NM_010817	17463	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	7.525	3.297	1.450	6.004	5.039	3.840	4.934	9.356	5.501	6.884	4.531	2.527	8.800	8.785	6.693	9.048	7.160	7.871	2.288	2.095	1.488	nan	2.164	1.761	7.886
200	chr1	58083873	58090347	+	0	NA	intron (NM_009676, intron 26 of 34)	intron (NM_009676, intron 26 of 34)	-26026	NM_023617	71724	Mm.20108	NM_023617	ENSMUSG00000064294	Aox3	1200011D03Rik|AI326299|Aoh1|Aoh2	aldehyde oxidase 3	protein-coding	10.586	1.084	0.723	4.918	4.534	2.876	9.806	6.762	5.284	6.555	5.103	3.803	9.204	8.534	7.874	11.791	7.822	7.255	2.483	1.258	1.291	2.344	1.460	1.462	9.417
9537	chr3	95446500	95451855	+	0	NA	intron (NM_009709, intron 2 of 20)	intron (NM_009709, intron 2 of 20)	14787	NM_001037737	11863	Mm.250265	NM_009709	ENSMUSG00000015522	Arnt	D3Ertd557e|Drnt|ESTM42|Hif1b|W08714|bHLHe2|mKIAA4051	aryl hydrocarbon receptor nuclear translocator	protein-coding	3.822	3.829	3.690	3.283	4.350	4.807	2.104	2.702	3.208	2.371	nan	2.309	1.720	2.574	1.926	nan	1.990	2.735	1.024	1.656	1.866	0.604	1.073	1.141	2.181
1352	chr10	61963378	61972546	+	0	NA	intron (NM_001304757, intron 1 of 37)	intron (NM_001304757, intron 1 of 37)	11146	NM_001304757	12817	Mm.300931	NM_007731	ENSMUSG00000058806	Col13a1	-	collagen, type XIII, alpha 1	protein-coding	4.874	15.509	10.454	5.983	3.737	2.585	1.271	1.359	2.957	3.035	2.278	1.438	1.194	2.650	2.672	2.680	2.399	3.321	nan	2.243	2.237	0.885	1.112	0.892	nan
15530	chr9	111019664	111026531	+	0	NA	intron (NM_008522, intron 5 of 16)	intron (NM_008522, intron 5 of 16)	3805	NM_008522	17002	Mm.282359	NM_008522	ENSMUSG00000032496	Ltf	Csp82|Lf|MMS10R|Ms10r	lactotransferrin	protein-coding	5.901	2.843	0.850	5.794	3.485	1.960	4.302	5.087	4.072	6.474	4.993	3.312	6.267	6.855	7.059	7.009	3.755	7.782	3.729	2.013	1.574	3.287	2.508	2.028	7.940
8387	chr2	76935855	76941402	+	0	NA	intron (NM_028004, intron 35 of 191)	intron (NM_028004, intron 35 of 191)	43919	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	6.984	0.524	0.249	4.693	3.834	2.305	5.754	5.009	8.045	9.625	2.016	1.354	7.923	7.509	4.499	7.628	7.832	7.943	0.594	0.758	0.438	0.502	0.631	0.677	nan
14117	chr8	33711745	33717095	+	0	NA	Intergenic	MMVL30-int|LTR|ERV1	-17494	NM_001167921	68153	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	0.338	0.499	0.440	0.428	0.177	0.091	0.301	0.571	0.188	0.225	0.422	0.167	0.227	0.224	0.237	0.424	0.435	0.397	2.015	3.867	1.962	5.822	1.392	1.453	nan
1621	chr10	93977175	93980139	+	0	NA	intron (NM_001304572, intron 9 of 11)	B3|SINE|B2	-14794	NR_029764	723908		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	4.168	3.821	0.917	8.173	1.626	1.267	2.172	4.061	3.431	6.893	3.063	2.395	2.630	4.095	4.967	5.709	2.387	6.004	nan	0.521	0.534	nan	0.675	1.346	8.277
11510	chr5	104264645	104269572	+	0	NA	Intergenic	MTC-int|LTR|ERVL-MaLR	-32179	NM_008318	15891	Mm.4987	NM_008318	ENSMUSG00000029306	Ibsp	BSP|BSP II|BSPII|Bsp2	integrin binding sialoprotein	protein-coding	3.801	1.152	0.580	3.605	2.315	1.453	3.781	4.037	2.720	2.996	1.815	1.095	2.269	5.138	5.188	6.032	3.973	3.970	nan	0.845	0.748	1.511	0.448	0.423	4.288
9236	chr3	37277458	37280523	+	0	NA	Intergenic	RMER17C-int|LTR|ERVK	33456	NM_145825	207175	Mm.344708	NM_145825	ENSMUSG00000045031	Cetn4	-	centrin 4	protein-coding	2.775	1.285	0.527	3.384	1.125	0.848	3.245	2.324	1.997	2.702	0.827	0.487	5.106	6.857	3.232	4.424	3.413	2.875	nan	0.842	0.734	nan	0.623	0.436	4.292
7681	chr19	29120754	29125865	+	0	NA	intron (NM_021525, intron 5 of 8)	intron (NM_021525, intron 5 of 8)	-11970	NR_029778	724062		NR_029778	ENSMUSG00000065556	Mir101b	Mirn101b|mir-101b	microRNA 101b	ncRNA	7.007	4.462	1.804	6.336	3.880	2.719	7.615	10.407	6.423	8.829	4.508	4.134	6.385	10.508	7.097	8.875	9.670	8.235	nan	2.330	1.844	2.653	nan	3.108	10.166
5945	chr16	25444198	25446357	+	0	NA	Intergenic	Intergenic	158460	NM_175165	71338	Mm.126851	NM_175165	ENSMUSG00000048399	Tprg	5430420C16Rik|Tprg1	transformation related protein 63 regulated	protein-coding	2.978	0.386	0.400	1.364	1.462	0.504	2.506	1.993	1.464	2.115	0.679	0.657	6.402	5.643	3.503	5.684	3.253	3.891	0.670	0.574	0.297	0.801	nan	0.309	2.246
5145	chr15	38489859	38491243	+	0	NA	promoter-TSS (NR_105916)	promoter-TSS (NR_105916)	-4	NR_105916	102465574		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	4.910	0.686	0.811	1.747	2.328	0.476	5.614	5.089	3.861	5.076	1.770	2.059	3.967	4.014	4.386	4.183	7.656	3.720	0.612	1.294	0.564	nan	0.707	0.211	3.984
7516	chr19	7069914	7071670	+	0	NA	intron (NM_134147, intron 3 of 10)	intron (NM_134147, intron 3 of 10)	14024	NM_134147	107227	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding	4.653	5.728	2.060	5.817	3.145	1.086	5.104	5.908	2.838	4.079	3.666	1.937	3.486	6.569	5.123	6.779	4.467	5.575	1.772	1.537	1.701	3.730	2.091	1.933	11.662
12159	chr6	37347911	37353324	+	0	NA	intron (NM_178661, intron 8 of 11)	intron (NM_178661, intron 8 of 11)	-50641	NM_001347104	320127	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	C130010K08Rik	diacylglycerol kinase, iota	protein-coding	2.603	1.443	0.591	2.142	2.002	1.134	4.156	3.602	2.206	2.042	2.144	1.844	3.910	4.152	3.658	3.978	3.029	nan	nan	2.134	1.165	3.718	nan	2.698	2.514
109	chr1	37640123	37643410	+	0	NA	intron (NM_028096, intron 2 of 9)	L1MD|LINE|L1	78045	NM_028096	72097	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	3.229	5.097	2.307	1.625	1.869	1.264	2.323	4.936	2.919	3.143	10.080	6.816	3.063	2.576	2.642	3.920	2.718	3.089	5.275	4.924	4.337	7.531	5.195	4.717	2.243
10752	chr4	137479415	137483172	+	0	NA	intron (NM_008305, intron 1 of 96)	MIR3|SINE|MIR	12490	NM_008305	15530	Mm.273662	NM_008305	ENSMUSG00000028763	Hspg2	AI852380|Pcn|Plc|per	perlecan (heparan sulfate proteoglycan 2)	protein-coding	nan	0.957	0.415	3.544	6.723	6.449	2.830	2.009	nan	2.557	2.499	0.804	2.065	5.605	2.640	2.948	1.266	nan	1.440	1.297	1.261	1.848	nan	1.569	4.698
13747	chr7	133803903	133814445	+	0	NA	intron (NM_025850, intron 1 of 10)	B1_Mm|SINE|Alu	-26389	NM_001286031	101437	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	4.756	nan	0.860	3.076	3.470	2.344	3.302	6.978	3.346	3.629	1.634	1.399	3.604	5.563	4.123	4.245	4.188	5.119	1.103	0.845	0.923	0.864	1.113	0.748	4.675
5232	chr15	59614253	59619816	+	0	NA	Intergenic	Lx5|LINE|L1	-31620	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	6.343	1.132	0.601	nan	5.998	3.068	8.151	12.289	3.418	4.320	2.448	1.302	6.973	10.020	6.358	nan	6.186	4.547	1.350	1.193	0.844	1.412	1.771	1.273	5.511
4464	chr14	9161821	9165269	+	0	NA	Intergenic	Intergenic	497155	NR_045968	74859	Mm.84041	NR_045968	ENSMUSG00000097898	4930455B14Rik	1700027C12Rik	RIKEN cDNA 4930455B14 gene	ncRNA	0.830	0.540	0.190	1.192	0.455	0.137	1.167	1.761	1.287	1.389	1.972	0.722	1.100	2.723	2.344	3.508	1.051	1.785	1.085	0.490	0.284	1.056	0.429	0.193	1.986
13874	chr7	148041460	148044409	+	0	NA	Intergenic	Intergenic	2728099	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	12.360	14.353	4.025	12.769	7.344	4.219	10.353	16.480	5.654	8.871	7.426	3.747	10.063	13.768	10.281	11.542	8.931	10.084	5.854	4.297	4.347	7.410	nan	3.747	16.117
11661	chr5	122160868	122165737	+	0	NA	intron (NM_013636, intron 1 of 6)	intron (NM_013636, intron 1 of 6)	5023	NM_013636	19047	Mm.280784	NM_013636	ENSMUSG00000004455	Ppp1cc	PP-1G|PP1|dis2m1	protein phosphatase 1, catalytic subunit, gamma isoform	protein-coding	6.579	6.503	1.419	6.872	4.787	4.005	7.693	6.847	4.973	13.840	5.875	4.068	5.640	8.797	7.492	8.059	4.590	7.394	nan	nan	2.549	3.627	nan	3.889	11.307
11140	chr5	33083496	33085683	+	0	NA	Intergenic	Intergenic	-19630	NM_019810	20537	Mm.25237	NM_019810	ENSMUSG00000011034	Slc5a1	Sglt1	solute carrier family 5 (sodium/glucose cotransporter), member 1	protein-coding	2.468	0.942	0.334	4.241	1.132	0.703	0.807	1.549	2.449	2.912	0.576	0.760	1.900	2.918	3.345	7.868	2.660	3.457	6.276	2.328	1.832	8.341	2.293	2.631	5.461
9214	chr3	30498536	30502548	+	0	NA	intron (NM_021442, intron 1 of 2)	intron (NM_021442, intron 1 of 2)	8945	NM_021442	14013	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	6.021	8.883	3.252	7.391	3.031	1.773	nan	5.062	4.355	5.370	3.996	2.633	5.620	6.543	nan	7.196	4.846	6.411	4.439	2.549	1.705	5.861	2.902	2.444	7.817
14931	chr9	30837031	30839129	+	0	NA	Intergenic	Intergenic	82870	NM_001329420	235130	Mm.65867	NM_001024139	ENSMUSG00000033453	Adamts15	-	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 15	protein-coding	8.817	15.143	4.509	13.901	4.984	4.513	6.849	7.564	7.326	16.181	7.951	4.006	8.096	9.878	9.635	13.667	5.756	12.005	6.637	2.768	5.731	8.478	3.699	6.769	19.788
2651	chr11	94142851	94144901	+	0	NA	Intergenic	ID_B1|SINE|B4	-67578	NM_009427	22057	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	1.119	nan	0.589	1.541	1.627	1.197	1.808	2.639	2.064	2.481	1.053	0.439	1.770	3.064	1.488	3.938	nan	2.486	0.801	nan	0.598	1.947	nan	nan	1.862
7526	chr19	7632656	7635029	+	0	NA	intron (NM_025731, intron 4 of 5)	MurERV4-int|LTR|ERVK	21273	NM_025731	66727	Mm.116803	NM_025731	ENSMUSG00000024973	Hrasls5	1700055A14Rik|1700086E08Rik|4921526K24Rik|HRSL5|iNAT	HRAS-like suppressor family, member 5	protein-coding	6.047	11.102	8.123	3.587	3.925	3.163	3.273	4.880	nan	3.980	1.852	2.534	3.197	2.998	2.294	3.817	5.785	3.267	2.565	3.605	3.062	1.903	5.661	5.318	6.756
7476	chr19	4210259	4217346	+	0	NA	promoter-TSS (NM_019952)	promoter-TSS (NM_019952)	-436	NR_132308	105948585	Mm.32518	NR_132308		Clcf1-pold4	-	Clcf1-pold4 readthrough	ncRNA	5.768	6.516	2.116	5.640	4.672	3.151	11.635	10.420	nan	8.441	5.231	3.357	4.844	10.393	7.831	nan	7.315	6.435	0.817	1.289	1.492	1.319	0.780	1.110	12.181
13790	chr7	135693879	135698854	+	0	NA	exon (NM_001081117, exon 12 of 14)	exon (NM_001081117, exon 12 of 14)	20013	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	2.500	nan	0.852	2.160	2.554	1.874	2.537	4.562	nan	2.369	4.417	3.881	2.423	3.242	2.038	1.645	1.856	2.570	3.029	4.084	2.941	3.916	2.553	2.415	2.105
10087	chr4	53238721	53241954	+	0	NA	Intergenic	Intergenic	-5859	NR_040665	78180	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	5.125	nan	1.655	2.968	4.260	2.501	4.192	2.764	3.195	2.992	3.761	2.040	3.725	3.964	2.746	4.834	2.694	4.291	nan	0.939	0.640	1.147	1.127	0.868	3.057
2764	chr11	99326465	99333990	+	0	NA	intron (NM_001033397, intron 7 of 7)	intron (NM_001033397, intron 7 of 7)	-7286	NM_133730	70810	Mm.268173	NM_133730	ENSMUSG00000035831	Krt25	4631426H08Rik|Ka38|Krt25a|mIRSa1	keratin 25	protein-coding	4.598	nan	0.277	3.240	5.007	2.455	5.244	3.852	4.856	5.338	4.045	2.194	6.953	9.250	7.062	7.481	4.851	7.225	0.816	nan	0.744	1.216	nan	nan	5.188
6437	chr17	26746293	26749426	+	0	NA	intron (NM_029870, intron 4 of 8)	MTB|LTR|ERVL-MaLR	32209	NM_029870	77128	Mm.275414	NM_029870	ENSMUSG00000048249	Crebrf	A930001N09Rik|LRF	CREB3 regulatory factor	protein-coding	4.423	1.548	0.679	4.513	3.172	1.365	4.199	5.450	2.354	2.464	4.889	2.464	3.697	6.346	3.127	3.654	1.757	4.567	1.459	0.735	0.732	3.568	0.555	0.295	4.130
2797	chr11	100906329	100908050	+	0	NA	intron (NM_213660, intron 4 of 23)	intron (NM_213660, intron 4 of 23)	32351	NM_213660	20848	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	2.103	nan	1.129	0.846	1.382	0.637	2.457	3.477	1.707	1.197	1.041	0.673	1.128	2.521	2.505	1.662	nan	2.111	5.877	5.592	2.520	5.596	6.565	3.940	1.502
10184	chr4	68612402	68615907	+	0	NA	Intergenic	(TCTG)n|Simple_repeat|Simple_repeat	340243	NM_019967	56710	Mm.248788	NM_019967	ENSMUSG00000028351	Brinp1	BRINP|Dbc1|Dbccr1|Fam5a	bone morphogenic protein/retinoic acid inducible neural specific 1	protein-coding	0.477	0.447	0.222	0.458	0.150	0.106	0.264	0.378	0.277	0.373	0.214	0.115	0.092	0.296	0.373	nan	0.356	0.380	4.677	4.238	3.459	nan	9.080	5.771	nan
5869	chr16	20086012	20089004	+	0	NA	Intergenic	Lx8|LINE|L1	-10046	NM_029436	75785	Mm.392450	NM_029436	ENSMUSG00000062901	Klhl24	1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082	kelch-like 24	protein-coding	1.341	9.656	6.358	0.931	1.011	0.431	0.509	0.670	1.193	nan	1.058	0.447	0.456	0.719	0.814	1.055	0.667	1.319	0.466	1.026	1.085	0.468	0.465	0.424	1.004
5177	chr15	54950861	54956636	+	0	NA	Intergenic	PB1D7|SINE|Alu	-33602	NM_001285994	18606	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	5.047	1.674	0.865	nan	1.928	1.002	nan	8.969	2.754	nan	1.796	1.481	5.046	4.731	5.058	nan	3.416	4.252	2.982	2.412	1.855	2.608	3.338	3.012	4.156
1556	chr10	85735142	85738027	+	0	NA	Intergenic	MusHAL1|LINE|L1	-135247	NM_133993	103136	Mm.18834	NM_133993	ENSMUSG00000001785	Pwp1	2310058A11Rik|2610205J09Rik|AI098170|AL022879|AV083409|AW550690	PWP1 homolog, endonuclein	protein-coding	2.637	0.757	0.115	5.400	1.587	0.507	1.126	1.300	1.958	2.421	1.009	0.635	0.821	nan	1.741	2.570	1.359	2.960	0.855	0.661	0.519	nan	nan	0.219	2.094
8750	chr2	145728498	145729697	+	0	NA	intron (NR_033220, intron 2 of 3)	intron (NR_033220, intron 2 of 3)	27902	NR_033220	408057	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	5.863	9.686	2.865	7.173	4.416	3.237	6.433	5.674	3.545	10.610	5.050	3.041	6.396	5.084	5.767	8.356	6.758	6.447	5.720	3.007	6.267	5.474	5.446	7.483	12.329
15850	chrX	155691687	155695314	+	0	NA	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-70173	NM_001093750	211612	Mm.218811	NM_001093750	ENSMUSG00000041552	Ptchd1	9630036J22Rik|AI848149|Gm387	patched domain containing 1	protein-coding	7.081	6.279	2.689	5.853	4.309	2.610	4.917	5.638	3.601	6.351	4.707	2.748	4.345	6.357	5.423	6.659	4.874	5.474	4.432	2.727	2.782	4.450	3.915	3.446	9.860
11811	chr5	136525412	136532426	+	0	NA	intron (NM_001291234, intron 1 of 22)	intron (NM_001291234, intron 1 of 22)	37062	NM_001291239	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	1.424	0.898	0.703	1.600	5.631	4.916	2.714	3.693	2.539	2.115	2.855	5.158	1.613	2.834	2.203	1.491	1.168	1.921	0.809	0.762	0.620	0.541	nan	0.772	1.134
4800	chr14	67680409	67681546	+	0	NA	intron (NM_001110162, intron 13 of 14)	intron (NM_001110162, intron 13 of 14)	34633	NM_001110162	108912	Mm.33831	NM_175384	ENSMUSG00000048922	Cdca2	2610311M19Rik|AI586158	cell division cycle associated 2	protein-coding	3.671	1.834	2.529	2.339	4.404	3.650	2.297	3.702	3.620	2.522	1.672	1.173	2.304	3.667	2.931	3.268	3.835	3.168	1.554	nan	0.712	0.901	2.180	1.588	2.348
3682	chr12	104114163	104117378	+	0	NA	intron (NM_028740, intron 1 of 3)	intron (NM_028740, intron 1 of 3)	3046	NM_001167705	74069	Mm.159128	NM_028740	ENSMUSG00000041536	Serpina3a	-	serine (or cysteine) peptidase inhibitor, clade A, member 3A	protein-coding	10.552	6.198	1.962	8.041	5.309	3.190	8.150	6.462	4.357	11.201	4.553	3.212	7.027	8.402	7.860	9.588	7.776	8.134	3.497	2.176	2.798	3.228	2.773	3.675	nan
8595	chr2	120226644	120231738	+	0	NA	intron (NM_177845, intron 1 of 19)	intron (NM_177845, intron 1 of 19)	16144	NM_177845	329502	Mm.330505	NM_177845	ENSMUSG00000050211	Pla2g4e	2310026J01Rik|C230096D22|Pla2epsilon	phospholipase A2, group IVE	protein-coding	9.803	6.253	2.345	6.197	3.133	1.428	5.327	8.694	5.492	5.661	5.576	3.391	7.279	8.675	6.292	nan	8.388	7.931	3.628	2.278	1.142	3.149	2.569	1.508	8.670
14265	chr8	67204196	67207717	+	0	NA	Intergenic	Intergenic	-284802	NM_008673	17960	Mm.14125	NM_008673	ENSMUSG00000025588	Nat1	Nat-1	N-acetyl transferase 1	protein-coding	3.172	1.141	0.598	1.621	2.869	2.398	1.752	4.495	3.091	2.779	5.438	4.656	2.956	3.085	2.683	2.178	1.682	3.154	nan	1.014	0.801	1.174	0.877	0.976	1.796
4593	chr14	33013430	33015615	+	0	NA	3' UTR (NM_026253, exon 4 of 4)	3' UTR (NM_026253, exon 4 of 4)	23140	NM_026253	67580	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	6.661	7.355	2.679	6.762	2.834	2.706	4.418	8.240	3.796	7.050	4.764	2.924	4.961	6.462	7.168	6.922	3.462	7.043	3.493	2.679	1.578	4.389	2.199	2.307	9.506
13912	chr7	150210573	150213643	+	0	NA	Intergenic	Intergenic	4897273	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	2.738	1.629	0.843	nan	2.263	0.924	2.561	2.227	2.857	2.254	6.861	2.457	2.585	2.453	2.876	2.100	1.899	3.338	0.518	0.623	0.569	0.492	nan	0.373	nan
14725	chr8	124997009	125000934	+	0	NA	Intergenic	ORR1C1-int|LTR|ERVL-MaLR	-14026	NM_016909	53424	Mm.5248	NM_016909	ENSMUSG00000056820	Tsnax	R74833|Trax	translin-associated factor X	protein-coding	6.336	6.849	1.314	5.839	1.716	1.522	3.874	7.065	3.433	6.852	3.401	1.548	4.726	5.962	5.727	7.208	3.425	6.021	nan	1.238	1.823	nan	1.263	nan	12.770
7160	chr18	36717156	36721523	+	0	NA	Intergenic	L1M4|LINE|L1	7476	NM_009841	12475	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	6.372	10.733	3.571	7.238	3.484	2.735	5.047	7.760	4.285	7.306	5.113	3.116	6.899	6.492	6.180	7.405	4.579	6.791	4.648	2.085	2.850	5.090	3.490	4.565	11.168
14352	chr8	77607008	77609735	+	0	NA	intron (NM_145599, intron 1 of 9)	intron (NM_145599, intron 1 of 9)	2282	NM_145599	234463	Mm.273578	NM_145599	ENSMUSG00000031617	Tmem184c	8430433H16Rik|AI645453|AL033298|BC004056|Tmem34	transmembrane protein 184C	protein-coding	8.126	3.063	1.980	3.666	6.078	4.184	3.113	6.069	nan	3.291	2.683	2.366	3.496	5.875	3.291	4.230	4.152	4.110	1.750	1.764	2.851	nan	1.934	1.488	3.131
15735	chrX	68538315	68540018	+	0	NA	Intergenic	L1_Mus2|LINE|L1	139233	NR_033481	100038638	Mm.368431	NR_033481	ENSMUSG00000096946	Fmr1os	Asfmr1|ENSMUSG00000073146|Gm10474	fragile X mental retardation syndrome 1, opposite strand	ncRNA	3.175	0.715	0.542	2.010	0.809	0.506	0.933	1.252	1.591	1.898	0.706	0.169	2.733	3.052	1.296	2.629	1.527	1.786	0.462	0.842	0.288	0.232	0.234	0.250	1.398
7320	chr18	64777152	64780325	+	0	NA	Intergenic	ID_B1|SINE|B4	-109018	NM_001114386	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	8.640	0.986	0.854	3.153	2.833	1.692	6.979	11.440	3.949	3.165	7.569	5.604	6.791	6.393	5.021	3.921	4.037	4.368	5.096	2.962	2.928	4.324	5.344	5.227	4.436
5049	chr15	10746426	10749515	+	0	NA	intron (NR_045063, intron 2 of 6)	intron (NR_045063, intron 2 of 6)	33070	NR_045065	75259	Mm.33928	NR_045063	ENSMUSG00000097058	4930556M19Rik	1700009D01Rik|C130022M03Rik	RIKEN cDNA 4930556M19 gene	ncRNA	5.707	1.126	0.411	3.833	3.765	1.373	8.799	7.952	4.514	5.130	3.083	2.142	8.943	7.997	6.850	5.972	5.561	7.153	0.454	0.804	0.461	0.556	0.284	0.167	5.564
1766	chr10	116716642	116720018	+	0	NA	Intergenic	Intergenic	10847	NR_045345	72286	Mm.396207	NR_045345	ENSMUSG00000100198	1700030O20Rik	-	RIKEN cDNA 1700030O20 gene	ncRNA	5.154	1.120	0.596	5.736	1.813	1.410	2.486	3.159	3.581	4.635	1.106	0.486	4.052	6.168	4.944	7.263	2.724	5.069	2.039	1.140	0.597	0.517	0.637	0.701	2.843
7806	chr19	45121303	45123815	+	0	NA	Intergenic	Intergenic	-28156	NM_021901	21908	Mm.391203	NM_021901	ENSMUSG00000025215	Tlx1	Hox-11|Hox11|Tlx-1	T cell leukemia, homeobox 1	protein-coding	11.654	7.706	2.454	8.218	6.941	2.480	12.143	11.675	5.036	8.658	8.836	3.382	6.650	13.580	9.111	11.874	10.740	9.163	2.577	4.212	1.951	4.273	5.097	2.143	15.324
11025	chr5	17076884	17083112	+	0	NA	Intergenic	MERV1_LTR|LTR|ERV1	-396124	NM_027609	70935	Mm.332225	NM_027609	ENSMUSG00000058643	Speer4f1	4922502J04Rik|SPEER-4F|Speer4f	spermatogenesis associated glutamate (E)-rich protein 4F1	protein-coding	4.417	0.489	0.243	4.566	2.475	0.912	6.116	4.733	5.304	4.712	3.195	3.345	5.513	6.027	8.660	7.538	4.822	7.488	1.467	0.695	0.281	1.649	0.569	0.375	4.911
7840	chr19	46865918	46868574	+	0	NA	intron (NM_033569, intron 4 of 7)	B1F|SINE|Alu	95105	NM_029810	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	4.631	0.640	0.287	3.062	2.971	2.820	3.840	3.147	4.895	4.448	4.786	3.507	4.556	4.695	4.856	5.589	5.755	nan	2.688	2.336	1.598	3.417	4.259	3.199	4.535
3982	chr13	37596039	37602501	+	0	NA	Intergenic	IMPB_01|Satellite|Satellite	-226768	NM_026830	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	5.475	nan	1.250	7.034	3.090	1.833	nan	nan	4.413	nan	2.800	1.936	4.181	6.300	5.604	6.850	4.425	nan	3.817	3.261	2.951	7.179	1.636	1.241	nan
8639	chr2	127160916	127162746	+	0	NA	Intergenic	Intergenic	-18374	NM_001163527	73338	Mm.57559	NM_001163527	ENSMUSG00000074825	Itpripl1	1700041B20Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 1	protein-coding	3.677	20.542	6.315	3.430	1.669	1.723	2.815	2.714	2.128	6.361	1.960	0.640	3.561	4.512	4.474	4.892	3.036	3.766	nan	1.696	1.985	1.374	1.070	1.535	6.580
14162	chr8	37662390	37663839	+	0	NA	intron (NM_145841, intron 3 of 7)	ORR1A2-int|LTR|ERVL-MaLR	589088	NR_029884	723860		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA	2.695	0.811	0.739	3.186	2.364	1.099	1.926	1.951	2.031	1.365	0.688	0.320	2.665	2.674	3.454	3.158	1.734	2.546	0.466	0.476	0.836	0.731	0.499	0.265	2.356
13260	chr7	72918746	72920043	+	0	NA	Intergenic	Intergenic	182674	NR_046024	625243	Mm.261798	NR_046024	ENSMUSG00000108383	Gm6567	-	predicted gene 6567	ncRNA	2.466	0.811	0.300	2.784	0.955	0.656	0.916	2.860	2.774	2.515	3.619	1.050	2.014	3.873	2.358	3.351	1.462	1.617	0.337	0.405	0.348	1.104	0.443	0.252	4.369
5841	chr16	17757190	17760543	+	0	NA	promoter-TSS (NM_145479)	promoter-TSS (NM_145479)	-755	NM_145479	224023	Mm.282807	NM_145479	ENSMUSG00000022750	Klhl22	2610318I18Rik|Kelchl	kelch-like 22	protein-coding	14.151	2.260	0.585	4.772	6.305	3.684	13.726	11.947	4.793	8.099	2.453	2.576	12.555	11.773	9.897	13.830	11.100	9.473	3.803	3.791	2.996	2.899	5.671	5.810	13.721
13175	chr7	52476303	52478413	+	0	NA	Intergenic	RMER15|LTR|ERVL	-461642	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	0.484	7.963	5.588	0.518	0.618	0.341	0.539	0.710	0.619	0.503	0.435	0.238	0.449	0.584	0.605	0.675	0.707	0.592	0.825	0.553	0.601	0.254	0.479	0.585	1.010
2072	chr11	32504509	32508043	+	0	NA	intron (NM_173784, intron 2 of 2)	intron (NM_173784, intron 2 of 2)	21298	NM_027031	69306	Mm.288704	NM_027031	ENSMUSG00000044056	Efcab9	1700007I06Rik|4930403C08Rik	EF-hand calcium binding domain 9	protein-coding	3.616	2.021	1.254	nan	4.538	4.873	3.140	4.004	4.577	4.260	3.737	3.297	3.222	5.308	3.449	4.318	nan	4.400	0.974	0.962	1.566	0.598	0.800	1.319	3.525
5647	chr15	99544955	99557368	+	0	NA	Intergenic	B1_Mur1|SINE|Alu	-22996	NM_001038658	72393	Mm.39760	NM_028224	ENSMUSG00000023011	Faim2	2900002L20Rik|Lfg|Lfg2|NMP25|Nmp35|Tmbim2	Fas apoptotic inhibitory molecule 2	protein-coding	5.869	2.321	1.186	4.290	2.895	1.652	7.726	10.647	3.095	4.588	1.986	1.718	7.312	8.138	6.417	nan	6.335	5.002	2.026	1.546	1.695	3.619	1.934	1.594	8.227
15370	chr9	88244604	88246914	+	0	NA	Intergenic	Intergenic	-81850	NM_011851	23959	Mm.244235	NM_011851	ENSMUSG00000032420	Nt5e	2210401F01Rik|5'-NT|AI447961|CD73|NT|Nt5|eNT	5' nucleotidase, ecto	protein-coding	2.521	1.335	0.525	1.784	1.115	0.383	1.330	3.671	3.477	4.102	2.540	1.241	3.332	4.043	3.085	5.212	2.204	4.846	0.708	0.668	0.445	0.676	0.336	0.125	5.919
13491	chr7	106828271	106829312	+	0	NA	Intergenic	Intergenic	-2048	NM_146597	258590	Mm.223116	NM_146597	ENSMUSG00000056863	Olfr702	MOR260-4	olfactory receptor 702	protein-coding	3.609	1.738	0.765	5.305	1.532	0.297	0.836	2.985	1.675	2.411	0.799	0.288	1.196	3.325	2.542	4.450	1.157	4.735	nan	0.575	0.306	0.664	0.326	0.321	6.687
9189	chr3	27545494	27556707	+	0	NA	intron (NM_173182, intron 4 of 25)	L1MB7|LINE|L1	33895	NR_037275	100526525		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	5.031	0.867	0.568	nan	4.225	2.759	5.247	2.545	nan	4.666	2.682	1.372	5.296	5.953	nan	4.340	4.089	5.916	1.439	1.274	0.809	1.172	1.205	0.927	6.306
8590	chr2	119936540	119941383	+	0	NA	intron (NM_001164274, intron 14 of 22)	intron (NM_001164274, intron 14 of 22)	-33738	NM_011941	26390	Mm.330501	NM_011941	ENSMUSG00000033902	Mapkbp1	2810483F24Rik|AW123212|JNKBP-1|Jnkbp1|mKIAA0596	mitogen-activated protein kinase binding protein 1	protein-coding	4.017	3.310	1.442	4.923	1.453	0.956	1.132	1.679	2.579	2.239	1.119	1.013	nan	1.835	2.087	2.617	1.944	4.705	1.463	1.325	1.045	2.818	0.793	0.549	3.304
8094	chr2	30662896	30664317	+	0	NA	intron (NR_136917, intron 2 of 3)	intron (NR_136917, intron 2 of 3)	14405	NR_136917	665635	Mm.450149	NR_136917		Gm14486	OTTMUSG00000016802	predicted gene 14486	ncRNA	5.209	7.124	1.363	5.568	2.093	0.853	4.691	6.663	nan	2.779	3.147	1.277	3.863	4.707	5.250	8.246	4.442	4.296	2.676	1.239	2.228	4.203	1.467	0.984	9.514
3121	chr11	120657145	120664713	+	0	NA	promoter-TSS (NM_175263)	promoter-TSS (NM_175263)	-92	NM_175263	77583	Mm.32839	NM_175263	ENSMUSG00000042988	Notum	5730593N15Rik	notum pectinacetylesterase homolog (Drosophila)	protein-coding	5.062	nan	1.369	4.643	4.245	3.470	nan	nan	4.808	6.020	2.883	1.716	5.804	7.173	4.053	5.157	4.945	nan	1.596	nan	2.115	1.643	1.750	1.992	4.208
3507	chr12	81129023	81130184	+	0	NA	intron (NM_022316, intron 3 of 12)	Lx|LINE|L1	-36548	NR_037227	100526532		NR_037227	ENSMUSG00000092673	Mir3067	mir-3067|mmu-mir-3067	microRNA 3067	ncRNA	2.540	1.223	0.413	2.209	2.138	0.796	1.681	0.580	2.105	2.616	1.038	1.235	2.402	3.488	1.469	2.030	1.732	2.510	1.458	1.712	0.519	1.508	0.840	1.083	2.434
11097	chr5	30033715	30037305	+	0	NA	Intergenic	Lx8|LINE|L1	22396	NM_031168	16193	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	2.171	0.437	0.580	nan	1.855	1.681	3.088	2.809	3.826	2.325	7.374	2.899	2.059	2.766	2.250	1.388	1.155	1.942	0.613	0.447	0.340	0.468	0.642	0.505	1.397
14253	chr8	63881221	63883879	+	0	NA	Intergenic	Intergenic	69620	NM_001195687	244495	Mm.485331	NM_001195687	ENSMUSG00000094443	Sgol2b	EG244495|Gm4975|Sgo2B	shugoshin like 2b (S. pombe)	protein-coding	2.216	0.529	0.576	0.719	0.839	0.239	2.684	4.029	1.348	1.434	0.602	1.232	1.749	2.128	3.119	4.784	2.435	1.611	nan	0.821	1.000	1.222	1.101	0.947	2.299
9311	chr3	52787209	52789274	+	0	NA	Intergenic	Intergenic	48517	NR_038079	329639	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	3.379	0.648	0.376	4.051	2.810	1.150	4.943	2.590	3.610	4.063	0.696	0.509	7.738	5.666	5.168	7.099	5.413	6.885	0.811	0.373	0.178	0.598	0.490	0.278	4.294
5733	chr15	102486030	102488986	+	0	NA	intron (NM_001103165, intron 10 of 14)	intron (NM_001103165, intron 10 of 14)	16876	NM_001174073	18521	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	7.205	1.189	0.605	2.819	1.326	0.482	8.901	7.174	4.181	2.699	3.912	1.257	5.578	3.488	6.407	6.171	7.539	4.733	0.830	0.846	0.465	0.887	0.809	0.643	7.433
3427	chr12	74442180	74444744	+	0	NA	Intergenic	L1_Rod|LINE|L1	145988	NM_198866	386753	Mm.341686	NM_198866	ENSMUSG00000029878	Dbpht2	Spot2	DNA binding protein with his-thr domain	protein-coding	2.575	1.163	0.332	3.868	1.276	0.651	0.856	0.808	1.894	1.948	0.969	0.852	0.918	nan	0.981	nan	1.529	3.071	2.412	0.815	0.521	1.122	1.012	0.684	1.300
2624	chr11	88869931	88871964	+	0	NA	intron (NR_126433, intron 3 of 4)	intron (NR_126433, intron 3 of 4)	-6361	NM_001042541	11640	Mm.2969	NM_009648	ENSMUSG00000018428	Akap1	AKAP121|AKAP84|Akap|C76494|C81186|DAKAP1|S-AKAP84	A kinase (PRKA) anchor protein 1	protein-coding	nan	0.767	0.694	1.910	2.202	1.823	2.990	2.718	1.999	1.908	0.538	0.590	1.814	2.025	1.858	2.369	1.617	2.323	4.739	3.810	5.218	nan	6.270	6.590	nan
14633	chr8	117403630	117407498	+	0	NA	intron (NM_028941, intron 3 of 20)	intron (NM_028941, intron 3 of 20)	-47459	NR_106045	102466801		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	6.557	10.782	5.020	2.255	4.051	1.805	4.825	3.855	3.111	4.674	0.502	0.497	5.179	5.452	5.560	8.871	7.189	4.750	0.891	1.859	1.644	1.582	1.961	1.401	8.823
10846	chr4	142775948	142777472	+	0	NA	Intergenic	Intergenic	359452	NR_105988	102465618		NR_105988	ENSMUSG00000106597	Mir7021	mmu-mir-7021	microRNA 7021	ncRNA	nan	12.439	6.994	0.569	0.971	0.368	0.610	0.430	nan	0.431	0.425	0.162	0.180	0.584	0.656	0.688	0.181	nan	0.876	0.534	0.241	0.482	nan	0.499	0.652
7553	chr19	10085761	10087165	+	0	NA	intron (NM_019699, intron 4 of 11)	intron (NM_019699, intron 4 of 11)	15040	NM_019699	56473	Mm.38901	NM_019699	ENSMUSG00000024665	Fads2	2900042M13Rik|Fadsd2	fatty acid desaturase 2	protein-coding	1.572	0.788	0.582	1.995	1.478	0.904	2.445	1.265	nan	1.099	0.620	0.470	0.998	3.553	1.136	nan	2.351	1.916	0.345	1.138	0.553	0.783	0.704	0.737	1.212
5805	chr16	11467963	11476525	+	0	NA	intron (NM_001290148, intron 6 of 13)	RMER17C-int|LTR|ERVK	66596	NM_001290148	74478	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|ENSMUSG00000079738|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	3.983	2.272	0.837	2.901	3.659	1.566	nan	5.008	3.313	3.744	2.158	2.258	5.269	6.196	5.090	6.452	3.713	5.807	2.295	1.580	0.873	1.817	2.630	2.048	6.635
14505	chr8	97874951	97885055	+	0	NA	Intergenic	Lx6|LINE|L1	-1131884	NR_110579	100873092	Mm.414599	NR_110579	ENSMUSG00000089819	Gm15679	OTTMUSG00000025218	predicted gene 15679	ncRNA	6.915	1.455	0.425	5.801	1.930	0.946	2.914	6.466	4.399	6.250	3.734	3.159	5.132	3.685	6.408	8.434	5.779	8.062	1.148	0.706	0.748	3.203	0.950	0.935	14.255
1157	chr10	20237592	20239151	+	0	NA	intron (NM_001198635, intron 3 of 17)	intron (NM_001198635, intron 3 of 17)	29932	NM_001101561	621697	Mm.440587	NM_001101561		Rpl32l	EG621697|Gm6251	ribosomal protein L32-like	protein-coding	1.151	2.215	1.801	2.087	3.655	1.217	0.380	2.056	nan	3.756	0.467	0.080	1.901	nan	2.120	2.026	0.913	1.554	0.555	0.711	0.236	1.097	0.485	0.137	nan
14605	chr8	113338059	113341751	+	0	NA	Intergenic	Intergenic	-177377	NR_110476	78048	Mm.252797	NR_110476		4930571O06Rik	-	RIKEN cDNA 4930571O06 gene	ncRNA	2.972	1.337	0.783	0.968	1.159	0.694	2.659	6.798	2.221	1.608	3.385	2.150	2.963	3.024	2.561	nan	1.916	1.899	1.086	0.749	0.398	2.664	0.427	0.201	1.621
1470	chr10	79157507	79171101	+	0	NA	intron (NM_001103368, intron 1 of 5)	L1VL2|LINE|L1	15488	NM_001103368	624765	Mm.469843	NM_001103368	ENSMUSG00000091888	Vmn2r80	EG624765	vomeronasal 2, receptor 80	protein-coding	8.549	2.441	1.326	6.266	8.782	6.440	8.409	10.010	6.778	10.367	5.164	5.616	8.593	11.824	nan	8.913	9.499	7.353	nan	2.909	3.407	5.182	3.829	3.393	12.113
5790	chr16	10781161	10787909	+	0	NA	exon (NM_001271603, exon 2 of 2)	exon (NM_001271603, exon 2 of 2)	1001	NM_009896	12703	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	5.829	14.256	3.999	6.365	1.880	1.419	nan	3.703	2.605	4.844	3.434	2.010	4.110	4.078	5.332	6.903	3.032	5.804	2.320	1.050	1.647	3.166	1.232	1.870	11.175
5330	chr15	74820021	74822184	+	0	NA	intron (NM_010416, intron 2 of 3)	intron (NM_010416, intron 2 of 3)	2026	NM_010416	15202	Mm.17336	NM_010416	ENSMUSG00000068600	Gml2	1700057K19Rik|HemT|Hemt1	glycosylphosphatidylinositol anchored molecule like 2	protein-coding	nan	9.199	8.744	4.560	9.232	7.586	6.312	6.702	3.002	nan	5.419	4.354	3.459	nan	2.573	2.373	nan	2.671	1.354	3.040	2.453	nan	2.409	2.009	2.316
15589	chr9	119885584	119893874	+	0	NA	Intergenic	Intergenic	-5166	NM_026236	67561	Mm.104789	NM_026236	ENSMUSG00000032512	Wdr48	8430408H12Rik|Uaf1|mKIAA1449	WD repeat domain 48	protein-coding	9.080	15.043	6.137	9.503	4.879	2.593	5.571	7.280	4.527	7.383	5.095	2.451	4.500	7.955	5.798	7.664	4.379	7.213	2.691	3.539	2.708	2.955	nan	2.666	10.208
6986	chr18	4643682	4645826	+	0	NA	intron (NM_001081963, intron 1 of 3)	intron (NM_001081963, intron 1 of 3)	9825	NM_001081963	240185	Mm.33179	NM_001081963	ENSMUSG00000033960	9430020K01Rik	1110056P05Rik|Gm328|Jcad|mKIAA1462	RIKEN cDNA 9430020K01 gene	protein-coding	4.963	0.843	0.609	4.299	2.704	2.276	3.507	4.803	4.157	3.456	1.061	2.130	3.481	4.675	5.031	4.726	5.345	4.919	0.722	0.922	1.268	0.657	1.199	1.042	2.935
15377	chr9	89926806	89938475	+	0	NA	intron (NM_011245, intron 2 of 26)	L1_Mus2|LINE|L1	22865	NM_001039655	19417	Mm.44561	NM_011245	ENSMUSG00000032356	Rasgrf1	AI844718|CDC25|CDC25Mm|Gnrp|Grf1|Grfbeta|P190-A|Ras-GRF1|p190|p190RhoGEF	RAS protein-specific guanine nucleotide-releasing factor 1	protein-coding	5.658	1.441	0.716	3.975	4.490	2.498	6.067	6.230	6.051	7.497	4.190	2.451	6.305	9.020	7.779	8.094	4.512	8.697	0.522	0.684	0.630	0.440	0.504	0.368	8.082
14204	chr8	47220134	47238976	+	0	NA	intron (NM_175162, intron 1 of 4)	L1MD2|LINE|L1	59847	NM_001286376	71069	Mm.23973	NM_175162	ENSMUSG00000038143	Stox2	4933409N07Rik|AI449080|AI835114|mKIAA1392	storkhead box 2	protein-coding	7.859	3.306	1.830	5.524	4.175	2.938	5.090	6.593	6.143	8.818	1.283	1.304	8.609	6.598	7.150	10.534	8.859	8.725	1.616	1.606	1.447	2.087	1.324	1.333	10.332
7464	chr19	3838078	3861448	+	0	NA	Intergenic	B1_Mur3|SINE|Alu	-2010	NM_001271496	12660	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	5.720	1.976	0.963	4.821	6.949	5.989	7.963	7.826	nan	5.985	3.771	1.887	5.139	7.877	5.921	nan	7.362	6.532	1.588	2.029	2.757	3.269	3.035	3.612	8.630
4835	chr14	73651627	73659231	+	0	NA	Intergenic	Intergenic	102643	NM_011506	20916	Mm.38951	NM_011506	ENSMUSG00000022110	Sucla2	4930547K18Rik|A-SCS	succinate-Coenzyme A ligase, ADP-forming, beta subunit	protein-coding	7.398	1.231	0.952	2.982	4.051	2.562	6.806	9.066	5.018	4.978	4.527	5.036	6.459	6.910	5.088	6.553	5.924	5.307	1.801	2.336	1.225	0.895	2.749	2.399	4.228
12491	chr6	94179453	94182403	+	0	NA	intron (NR_130996, intron 1 of 1)	intron (NR_130996, intron 1 of 1)	56514	NR_130996	78178	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	3.741	0.466	0.321	2.564	2.133	0.712	3.739	3.666	2.558	2.438	0.932	1.107	3.619	5.281	5.107	4.967	4.054	5.093	nan	nan	0.401	0.664	0.463	0.322	4.089
15602	chr9	120839655	120851432	+	0	NA	Intergenic	Intergenic	69707	NR_040742	76402	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	5.145	4.267	1.680	4.754	2.480	1.512	3.493	4.623	4.613	6.534	3.902	3.035	4.479	5.583	5.777	6.653	2.987	6.347	3.352	1.265	1.312	3.227	nan	1.920	6.811
10167	chr4	62712140	62714905	+	0	NA	Intergenic	L1Md_A|LINE|L1	39548	NM_001310706	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	4.471	nan	0.559	1.011	0.751	0.400	7.096	6.162	1.513	1.201	0.578	0.829	5.599	3.905	7.327	7.333	2.602	3.486	nan	0.213	0.355	1.196	0.788	0.549	6.149
6829	chr17	71531400	71547356	+	0	NA	Intergenic	MTEb|LTR|ERVL-MaLR	-12521	NM_023294	67052	Mm.225956	NM_023294	ENSMUSG00000024056	Ndc80	2610020P18Rik|AV139730|HEC|HEC1|Kntc2	NDC80 kinetochore complex component	protein-coding	7.096	4.617	2.495	7.507	8.678	4.872	6.886	6.871	nan	8.486	3.004	2.435	6.224	nan	7.800	8.734	6.595	9.165	2.424	1.670	0.899	2.488	1.860	1.262	7.225
2100	chr11	44339884	44345855	+	0	NA	Intergenic	RLTR48A|LTR|ERV1	-57194	NM_001303244	16160	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	4.197	8.378	5.072	3.778	3.066	1.754	4.148	4.789	3.181	4.327	3.656	1.701	5.826	7.429	4.298	4.482	6.189	nan	nan	1.743	1.103	nan	nan	0.481	3.074
1006	chr1	187056482	187060397	+	0	NA	intron (NM_028848, intron 9 of 9)	(TAGA)n|Simple_repeat|Simple_repeat	-66699	NR_040554	69308	Mm.490882	NR_040554	ENSMUSG00000089730	1700007P06Rik	-	RIKEN cDNA 1700007P06 gene	ncRNA	5.334	0.588	0.441	1.301	0.904	0.734	1.555	2.775	1.991	2.105	0.827	0.783	3.494	4.194	2.842	4.918	6.013	3.204	1.242	0.892	0.580	0.626	1.232	1.008	3.378
7025	chr18	12014848	12020118	+	0	NA	intron (NM_178801, intron 13 of 14)	RMER17C|LTR|ERVK	104054	NR_110356	338363	Mm.271567	NM_178801	ENSMUSG00000049411	Tmem241	6030446N20Rik	transmembrane protein 241	protein-coding	4.519	1.214	0.541	3.840	2.101	0.706	0.801	5.363	2.817	4.651	2.135	1.983	nan	3.168	1.423	4.938	3.705	5.051	1.701	0.639	0.404	1.247	1.656	0.739	4.042
5773	chr16	9343302	9344496	+	0	NA	Intergenic	Intergenic	513799	NM_001081400	69053	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	2.204	0.309	0.422	1.566	2.300	0.216	nan	2.374	1.359	1.619	0.274	0.174	0.918	2.817	1.222	0.931	0.374	2.085	0.522	0.296	0.487	0.612	0.348	0.401	0.987
14948	chr9	32502925	32515026	+	0	NA	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	32477	NM_008026	14247	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	4.682	11.722	3.693	5.695	2.680	1.156	2.436	2.149	3.878	4.134	3.671	2.907	2.301	2.747	3.460	nan	1.997	4.802	2.999	2.001	1.806	2.680	2.261	2.265	3.290
3813	chr13	3828746	3832569	+	0	NA	Intergenic	Intergenic	-7100	NM_020036	80796	Mm.21075	NM_020036	ENSMUSG00000033765	Calm4	2310037J09Rik|AI649108|DD112|Scarf	calmodulin 4	protein-coding	6.288	0.369	0.659	2.928	5.249	2.986	6.016	7.508	5.928	5.983	10.073	3.573	8.682	9.278	6.784	6.901	5.163	6.512	2.525	2.396	2.251	3.461	0.761	0.971	6.667
15033	chr9	45196972	45198399	+	0	NA	intron (NM_001198971, intron 1 of 4)	intron (NM_001198971, intron 1 of 4)	1919	NM_001198971	408059	Mm.249297	NM_001198971	ENSMUSG00000091996	BC049352	-	cDNA sequence BC049352	protein-coding	2.323	0.977	0.480	2.649	1.035	0.673	2.118	4.978	3.098	4.731	0.783	1.369	3.476	5.168	4.643	5.002	1.107	3.350	2.225	0.512	0.429	1.990	1.031	1.047	6.030
11868	chr5	139604883	139606011	+	0	NA	Intergenic	B3|SINE|B2	61549	NM_013702	22255	Mm.42190	NM_013702	ENSMUSG00000029546	Uncx	Chx4|Uncx4.1	UNC homeobox	protein-coding	1.349	0.748	0.340	3.091	1.721	1.314	6.909	2.726	0.547	3.797	0.286	0.532	1.462	4.229	2.544	2.647	1.727	1.457	2.817	1.573	2.941	2.224	7.214	7.474	3.980
996	chr1	186631745	186633382	+	0	NA	exon (NM_009367, exon 4 of 7)	exon (NM_009367, exon 4 of 7)	73426	NM_009367	21808	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	3.671	1.383	0.598	1.039	1.106	0.602	3.555	1.252	1.319	1.672	5.771	1.065	1.514	1.944	1.031	2.184	1.401	1.566	0.746	0.731	0.399	0.829	0.438	0.487	1.261
14753	chr8	125955789	125957963	+	0	NA	Intergenic	Intergenic	-38226	NM_008430	16525	Mm.10800	NM_008430	ENSMUSG00000033998	Kcnk1	AI788889|TWIK-1	potassium channel, subfamily K, member 1	protein-coding		15.572	10.771	nan			nan	nan				0.048			nan			nan	nan	0.080	0.169	nan	0.321	nan	nan
12504	chr6	95129236	95130678	+	0	NA	TTS (NM_001102670)	TTS (NM_001102670)	12077	NM_001008785	243574	Mm.333275	NM_001008785	ENSMUSG00000030031	Kbtbd8	AU040152|SSEC-51|SSEC51|Takrp|mKIAA1842	kelch repeat and BTB (POZ) domain containing 8	protein-coding	1.865	0.245	0.179	1.202	1.021	0.431	1.136	2.740	1.653	1.490	0.231	0.602	1.853	5.028	3.074	nan	1.038	2.834	nan	nan	0.255	1.784	1.685	0.734	0.848
8632	chr2	126556270	126558393	+	0	NA	intron (NM_011978, intron 1 of 9)	L1MA4|LINE|L1	4307	NM_011978	26458	Mm.290044	NM_011978	ENSMUSG00000027359	Slc27a2	ACSVL1|FATP2|VLCS|Vlac|Vlacs	solute carrier family 27 (fatty acid transporter), member 2	protein-coding	2.420	1.141	1.125	1.803	1.171	0.401	1.223	0.995	2.032	2.317	0.464	0.351	2.954	2.723	2.447	4.247	4.509	2.910	nan	0.547	0.232	0.532	0.410	0.202	4.198
4596	chr14	34898403	34901952	+	0	NA	intron (NM_008166, intron 2 of 15)	intron (NM_008166, intron 2 of 15)	5568	NR_029774	723847		NR_029774	ENSMUSG00000065481	Mir346	Mirn346|mir-346|mmu-mir-346	microRNA 346	ncRNA	1.421	0.739	0.403	1.187	0.366	0.177	0.927	3.043	1.979	1.539	8.491	3.761	1.933	2.167	1.231	1.302	0.787	1.118	0.893	0.609	0.499	1.051	0.596	0.264	1.603
1840	chr10	126640575	126643162	+	0	NA	Intergenic	Intergenic	68523	NR_105841	102465224		NR_105841	ENSMUSG00000098756	Mir378d	Gm27650|mmu-mir-378d	microRNA 378d	ncRNA	4.272	nan	0.611	2.576	1.669	1.152	4.357	4.600	2.718	2.893	0.399	0.663	4.842	5.215	5.346	4.705	6.455	3.867	5.216	1.418	2.183	0.725	nan	2.844	6.367
3656	chr12	103343550	103345103	+	0	NA	intron (NM_023049, intron 2 of 9)	intron (NM_023049, intron 2 of 9)	11675	NM_023049	65256	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	2.789	0.825	0.500	1.913	0.943	0.242	2.133	1.612	2.937	3.013	0.621	0.390	5.159	4.429	3.624	6.128	3.861	3.450	4.055	1.061	0.473	3.592	1.024	0.901	4.300
2069	chr11	32441062	32444066	+	0	NA	Intergenic	PB1D11|SINE|Alu	-12808	NM_173784	327900	Mm.260956	NM_173784	ENSMUSG00000044949	Ubtd2	4930571L24|9630054F20Rik|AI645720	ubiquitin domain containing 2	protein-coding	5.845	10.583	5.106	4.933	4.006	2.765	1.771	1.830	3.097	4.303	2.489	1.231	1.267	2.733	2.236	2.812	nan	2.349	1.241	2.148	3.124	0.908	0.749	0.830	3.363
11725	chr5	124990105	124992575	+	0	NA	Intergenic	Intergenic	-12135	NM_028443	73121	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	5.149	7.487	2.378	6.452	1.807	1.803	5.263	4.651	3.157	7.402	3.072	3.654	4.498	7.181	7.519	7.136	nan	5.830	3.908	1.573	1.737	3.718	nan	2.127	8.125
629	chr1	134972322	134975392	+	0	NA	exon (NM_026024, exon 7 of 7)	exon (NM_026024, exon 7 of 7)	11292	NM_001278115	67196	Mm.284587	NM_026024	ENSMUSG00000026429	Ube2t	2700084L22Rik|C80607	ubiquitin-conjugating enzyme E2T	protein-coding	4.932	4.312	1.932	3.987	2.551	1.847	4.629	5.055	4.176	4.952	1.456	2.100	4.995	4.802	4.153	8.473	5.173	5.405	0.848	1.387	1.198	1.259	0.713	0.449	nan
9024	chr2	167481661	167487757	+	0	NA	intron (NM_170756, intron 2 of 2)	intron (NM_170756, intron 2 of 2)	-7936	NM_030743	81018	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	7.782	14.297	5.053	7.926	5.072	2.751	3.949	9.009	4.585	7.458	4.776	2.642	6.224	8.629	5.998	7.891	6.092	6.719	nan	2.648	2.152	2.709	2.575	2.025	9.803
14236	chr8	59965240	59969296	+	0	NA	Intergenic	ORR1A4|LTR|ERVL-MaLR	141619	NR_126087	75017	Mm.60775	NR_126087	ENSMUSG00000110406	4930470O06Rik	-	RIKEN cDNA 4930470O06 gene	ncRNA	6.255	5.625	2.299	4.938	2.842	1.781	3.534	6.889	3.573	4.645	3.334	3.903	4.622	4.564	6.347	8.118	5.955	5.347	3.495	3.391	3.440	6.389	3.125	4.190	8.908
372	chr1	85100062	85102905	+	0	NA	intron (NM_213615, intron 1 of 6)	B1_Mm|SINE|Alu	8370	NM_213615	381287	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	1.353	9.424	11.802	0.974	0.669	0.684	0.920	0.489	0.696	0.487	0.777	0.588	0.391	0.449	0.614	0.947	1.375	0.613	1.059	1.776	1.870	nan	0.451	1.071	0.719
4525	chr14	22606659	22607614	+	0	NA	intron (NM_028275, intron 5 of 6)	RLTR17B_Mm|LTR|ERVK	-64338	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	2.883	0.845	0.468	0.886	0.603	0.240	1.096	1.398	nan	1.531	0.341	0.618	1.248	3.141	2.160	1.884	1.138	1.873	0.481	0.804	0.360	nan	0.141	0.293	3.077
15224	chr9	66177027	66180478	+	0	NA	intron (NM_010019, intron 2 of 11)	intron (NM_010019, intron 2 of 11)	20526	NM_010019	13143	Mm.304472	NM_010019	ENSMUSG00000032380	Dapk2	-	death-associated protein kinase 2	protein-coding	3.506	0.631	0.608	2.608	2.332	1.602	3.090	4.418	3.711	5.466	0.624	1.244	4.341	5.067	3.312	3.845	3.576	5.182	nan	1.549	0.846	1.934	1.864	1.189	2.590
15778	chrX	96665027	96666602	+	0	NA	Intergenic	Lx9|LINE|L1	-47654	NM_029536	76206	Mm.256065	NM_029536	ENSMUSG00000031210	Gpr165	6530406P05Rik	G protein-coupled receptor 165	protein-coding	4.191	3.951	1.784	4.040	1.668	1.644	3.472	4.024	1.883	3.585	3.121	2.200	3.523	3.950	3.236	4.461	4.055	2.943	3.770	3.050	1.747	2.208	3.123	3.403	4.402
11242	chr5	53979643	53983636	+	0	NA	Intergenic	Intergenic	-16884	NM_001081103	116873	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	8.994	9.663	3.651	7.847	7.659	5.670	9.931	6.915	4.739	13.797	7.320	4.587	6.217	9.833	7.220	7.823	7.243	6.877	5.984	5.818	6.069	6.198	7.291	9.770	11.187
1661	chr10	95800170	95802022	+	0	NA	Intergenic	Intergenic	-139567	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	12.149	3.097	1.364	5.798	4.810	2.294	6.038	6.662	8.499	10.351	7.226	4.181	7.818	10.752	8.926	9.025	7.014	9.429	nan	0.948	0.331	1.296	1.166	0.563	8.094
12847	chr6	145743284	145746135	+	0	NA	Intergenic	Intergenic	-63674	NM_027760	71323	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	3.012	0.776	0.256	3.308	1.255	0.928	2.576	2.138	2.944	2.801	1.027	1.115	nan	3.171	2.845	4.791	2.146	4.833	1.152	nan	0.903	nan	0.532	0.471	nan
12266	chr6	56744902	56748700	+	0	NA	intron (NM_030235, intron 13 of 15)	L1Md_A|LINE|L1	31896	NM_030235	78937	Mm.105343	NM_030235	ENSMUSG00000029787	Avl9	5830411G16Rik|D730049P16Rik|mKIAA0241	AVL9 cell migration associated	protein-coding	7.018	11.655	3.645	8.271	3.553	2.145	8.990	9.687	5.850	9.181	4.585	3.038	13.113	10.354	12.257	11.612	7.174	11.282	nan	2.630	2.512	5.878	3.110	2.811	11.992
7357	chr18	68502173	68506545	+	0	NA	Intergenic	Intergenic	-75039	NM_001271716	17200	Mm.426053	NM_008560	ENSMUSG00000045569	Mc2r	ACTH-R|ACTHR|MC2-R	melanocortin 2 receptor	protein-coding	5.925	0.512	0.640	1.006	1.267	0.719	1.427	1.357	1.351	1.882	0.403	0.258	2.489	2.996	1.530	1.711	6.912	1.875	0.669	0.643	0.417	0.364	0.688	0.349	3.882
3041	chr11	117659069	117665194	+	0	NA	intron (NM_198022, intron 1 of 21)	intron (NM_198022, intron 1 of 21)	7842	NM_198022	217351	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	1.964	13.768	9.986	2.133	1.610	1.165	nan	nan	1.738	nan	1.044	1.077	0.801	1.108	1.392	1.455	1.984	nan	1.081	nan	2.097	0.804	1.156	1.203	1.456
11316	chr5	67008240	67012638	+	0	NA	intron (NM_001256122, intron 8 of 20)	intron (NM_001256122, intron 8 of 20)	42023	NM_001256122	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding	5.872	2.377	0.383	7.297	2.241	1.528	5.045	4.443	4.956	9.205	4.200	2.368	5.737	5.611	7.281	8.241	4.321	7.901	4.029	1.479	1.409	5.714	2.909	2.447	9.708
7351	chr18	67902581	67910816	+	0	NA	Intergenic	MLTR14|LTR|ERV1	-26559	NM_172631	52662	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	8.930	1.121	0.927	4.923	9.836	7.888	6.148	6.400	6.301	7.837	3.091	1.889	8.177	7.980	4.495	5.326	5.887	5.927	1.036	1.283	1.238	1.764	0.800	0.896	5.785
5137	chr15	38310922	38316198	+	0	NA	Intergenic	PB1D10|SINE|Alu	-12849	NM_001289471	21847	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	6.910	3.140	1.721	4.323	3.500	2.569	6.756	11.007	2.980	3.668	4.057	2.678	4.823	4.848	4.443	4.092	4.739	4.541	4.276	3.254	2.218	nan	4.639	3.152	nan
8380	chr2	76169649	76178008	+	0	NA	intron (NM_001081033, intron 5 of 19)	intron (NM_001081033, intron 5 of 19)	164825	NM_001081033	241489	Mm.246613	NM_001081033	ENSMUSG00000075270	Pde11a	6330414F14Rik|A630086N24Rik|Gm350|PDE11A1	phosphodiesterase 11A	protein-coding	nan	0.545	0.248	nan	0.110	0.033	0.339	0.864	1.281	0.749	0.213	0.304	0.157	0.215	nan	nan	0.513	0.525	4.383	2.591	1.636	7.018	2.072	1.461	nan
1160	chr10	20279881	20281628	+	0	NA	3' UTR (NM_008635, exon 18 of 18)	3' UTR (NM_008635, exon 18 of 18)	16934	NR_105840	102466647		NR_105840	ENSMUSG00000098887	Mir6413	Gm27432|mmu-mir-6413	microRNA 6413	ncRNA	2.167	0.895	0.411	2.618	0.808	0.313	1.821	2.007	2.783	2.883	0.425	0.843	2.075	3.373	3.733	5.652	2.775	3.680	0.430	0.559	0.240	1.267	0.262	0.154	5.064
10021	chr4	43685235	43688620	+	0	NA	intron (NM_001085508, intron 10 of 12)	LTR89|LTR|ERVL?	13880	NM_019485	56014	Mm.331571	NM_019485	ENSMUSG00000050215	Olfr70	MOR262-10|mOR6	olfactory receptor 70	protein-coding	1.030	nan	0.561	1.442	1.136	0.869	1.648	1.960	1.368	1.852	0.388	0.382	2.263	4.411	1.329	3.749	1.519	1.349	0.721	0.517	0.398	nan	0.409	0.111	2.759
12014	chr5	151996504	151997502	+	0	NA	Intergenic	Intergenic	-345795	NM_027009	69263	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	1.905	0.502	0.540	3.253	1.422	1.179	0.884	0.809	2.749	2.207	0.437	1.171	1.602	3.677	1.811	2.567	1.297	3.714	0.799	0.804	0.822	1.679	0.361	0.785	2.690
9453	chr3	88549846	88550887	+	0	NA	intron (NM_031248, intron 3 of 3)	RLTR12D|LTR|ERVK	-2087	NM_016899	53868	Mm.26994	NM_016899	ENSMUSG00000008601	Rab25	AV012978	RAB25, member RAS oncogene family	protein-coding	6.048	1.263	1.339	2.877	2.961	2.833	4.353	6.252	3.625	2.767	0.929	3.637	3.662	4.507	3.242	3.907	3.805	3.712	nan	1.873	1.396	1.280	0.400	0.484	3.765
869	chr1	172854273	172860172	+	0	NA	Intergenic	Intergenic	37832	NM_011318	20219	Mm.330510	NM_011318	ENSMUSG00000026542	Apcs	Sap	serum amyloid P-component	protein-coding	1.809	9.751	5.879	nan	0.795	0.362	0.455	0.628	nan	1.112	0.466	0.343	nan	0.907	nan	0.974	0.955	1.025	0.408	1.388	0.574	nan	nan	0.265	nan
13265	chr7	73123240	73125650	+	0	NA	Intergenic	Intergenic	-22377	NR_046024	625243	Mm.261798	NR_046024	ENSMUSG00000108383	Gm6567	-	predicted gene 6567	ncRNA	4.722	2.668	0.717	4.021	1.561	0.897	5.948	7.026	4.612	4.602	1.752	0.666	8.586	6.265	8.472	8.099	3.767	5.055	0.961	0.376	0.124	1.321	0.283	0.277	10.344
5513	chr15	84505458	84506711	+	0	NA	Intergenic	Intergenic	51739	NM_177630	223732	Mm.6471	NM_177630	ENSMUSG00000055745	Ldoc1l	BC058638|Mar6|Mart6	leucine zipper, down-regulated in cancer 1-like	protein-coding	5.018	1.767	0.794	nan	0.932	0.477	6.543	11.669	1.910	2.190	0.660	1.487	6.899	5.213	5.981	6.810	4.618	4.416	nan	0.965	0.293	2.213	0.777	0.382	6.304
15072	chr9	50624732	50627442	+	0	NA	Intergenic	B3A|SINE|B2	-8623	NM_212449	270156	Mm.335149	NM_212449	ENSMUSG00000059820	AU019823	Gm639	expressed sequence AU019823	protein-coding	4.367	1.003	0.610	1.613	1.538	1.095	3.368	2.855	1.485	2.701	1.125	0.747	4.673	4.784	nan	nan	4.021	2.188	0.721	0.815	0.576	nan	0.653	0.353	4.650
5886	chr16	21332059	21334148	+	0	NA	non-coding (NR_131983, exon 1 of 1)	non-coding (NR_131983, exon 1 of 1)	253	NR_131983	76222	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	12.200	14.680	4.557	10.098	4.195	2.114	10.894	12.565	8.988	14.101	8.985	6.828	13.175	14.482	12.792	14.277	8.688	14.034	11.640	6.347	3.616	9.923	8.781	5.935	15.927
5035	chr15	8998891	9005502	+	0	NA	intron (NM_198024, intron 4 of 13)	intron (NM_198024, intron 4 of 13)	34247	NM_198024	223332	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	6.155	5.309	1.821	4.558	2.408	1.898	6.380	8.311	3.102	5.001	1.892	1.923	7.201	5.743	6.733	6.964	6.736	5.095	1.773	1.413	1.679	2.064	2.002	1.886	7.697
15009	chr9	44125852	44128993	+	0	NA	Intergenic	PB1D10|SINE|Alu	-7236	NM_023061	84004	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	7.012	9.357	2.535	8.945	1.869	1.037	3.127	6.160	4.340	8.184	3.864	1.920	5.023	6.254	6.496	9.127	3.426	7.550	3.335	1.053	0.958	4.231	1.325	1.357	11.247
4114	chr13	49555030	49556750	+	0	NA	intron (NM_001172481, intron 3 of 7)	intron (NM_001172481, intron 3 of 7)	11447	NM_025711	66695	Mm.383216	NM_025711	ENSMUSG00000021388	Aspn	4631401G09Rik|AA986886|Plap1|Slrr1c	asporin	protein-coding	4.475	1.648	0.536	4.021	1.155	0.463	2.110	2.522	2.777	3.245	1.032	0.466	2.537	4.216	4.351	4.718	3.347	3.450	0.978	nan	0.285	1.158	0.474	0.370	5.681
15156	chr9	60683699	60686984	+	0	NA	intron (NM_001311095, intron 2 of 15)	L1MB5|LINE|L1	2193	NM_001311095	102747	Mm.269413	NM_145616	ENSMUSG00000047766	Lrrc49	AI430817|AW050057|D430025H09Rik|PGs4|p79	leucine rich repeat containing 49	protein-coding	6.179	1.694	0.836	4.830	4.138	1.868	3.340	5.033	4.138	4.795	5.755	3.111	4.248	6.590	3.643	4.634	3.611	4.928	5.439	3.079	1.833	3.463	3.883	2.511	4.478
5134	chr15	38122761	38123676	+	0	NA	Intergenic	B1_Mur4|SINE|Alu	-44364	NM_001081359	70790	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	5.191	0.970	0.884	2.065	2.141	2.513	4.616	6.554	1.870	1.963	2.349	2.287	3.217	3.828	2.893	2.666	3.421	3.898	1.381	1.013	0.937	nan	1.482	1.662	2.511
8986	chr2	165687851	165690462	+	0	NA	intron (NM_001271962, intron 5 of 15)	intron (NM_001271962, intron 5 of 15)	33858	NM_010165	14049	Mm.282719	NM_010165	ENSMUSG00000017897	Eya2	Eab1	EYA transcriptional coactivator and phosphatase 2	protein-coding	3.702	1.872	0.942	5.042	2.858	2.187	2.313	6.257	3.548	3.572	2.454	2.083	4.311	5.054	4.083	6.338	5.022	3.878	3.562	2.692	2.368	2.294	3.426	2.483	5.505
4888	chr14	79556544	79563524	+	0	NA	intron (NM_001286411, intron 2 of 8)	(TA)n|Simple_repeat|Simple_repeat	-27657	NM_026474	67955	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	3.134	0.794	0.536	4.257	3.408	1.761	2.231	2.305	5.350	7.978	1.114	0.837	3.116	7.868	4.313	4.429	1.459	7.222	1.294	0.786	0.388	1.316	0.684	0.531	4.315
1697	chr10	105278140	105279219	+	0	NA	intron (NM_177368, intron 8 of 11)	URR1B|DNA|hAT-Charlie	295800	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	9.402	11.207	3.142	9.707	4.260	2.003	5.599	5.962	nan	9.809	5.845	4.850	7.061	6.968	8.816	9.492	5.623	9.043	5.892	2.291	3.277	7.586	2.866	3.288	14.257
3828	chr13	5858949	5871391	+	0	NA	exon (NM_011803, exon 2 of 4)	exon (NM_011803, exon 2 of 4)	3681	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	9.677	6.530	2.920	10.220	8.101	4.020	5.787	6.993	7.210	7.855	8.011	4.831	6.621	10.717	8.380	8.928	5.713	9.484	4.127	2.972	1.445	4.564	3.306	2.180	9.240
15348	chr9	79841646	79848420	+	0	NA	intron (NM_001081243, intron 4 of 5)	L1_Mur1|LINE|L1	51392	NR_040734	74633	Mm.262175	NR_040734	ENSMUSG00000086918	4930429F24Rik	-	RIKEN cDNA 4930429F24 gene	ncRNA	3.338	0.516	0.471	1.873	1.544	1.264	2.627	1.868	3.488	5.418	0.642	0.485	4.177	4.243	3.697	4.143	3.045	3.904	0.486	nan	0.253	0.275	0.270	0.314	nan
7542	chr19	9126657	9128477	+	0	NA	intron (NM_025610, intron 2 of 6)	intron (NM_025610, intron 2 of 6)	7999	NM_025610	66514	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	10.716	4.644	3.657	4.541	7.392	4.182	10.104	10.109	4.491	4.975	7.150	3.450	6.226	12.164	5.692	6.916	11.294	6.130	1.609	2.714	1.766	1.501	4.693	2.085	9.157
13414	chr7	95353789	95356320	+	0	NA	Intergenic	Intergenic	-816190	NM_001310762	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	7.877	5.472	3.502	3.374	7.741	4.613	5.830	4.076	4.532	5.084	3.695	2.244	4.424	6.262	4.578	6.146	5.649	5.015	nan	2.823	1.205	0.888	1.339	1.543	4.445
6159	chr16	77013993	77017626	+	0	NA	intron (NM_013918, intron 1 of 23)	intron (NM_013918, intron 1 of 23)	1740	NM_013918	30940	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	8.400	7.624	3.825	8.428	5.056	3.041	4.681	8.143	5.686	10.414	6.416	3.308	6.392	7.337	6.632	8.814	6.057	9.323	nan	2.047	1.273	2.160	2.071	2.632	8.140
7390	chr18	75163468	75166364	+	0	NA	intron (NM_027727, intron 13 of 16)	intron (NM_027727, intron 13 of 16)	132401	NR_045394	100503117	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	3.737	5.440	3.558	5.199	5.578	4.602	4.856	4.751	3.099	nan	2.816	1.913	3.934	5.142	4.020	3.735	3.370	3.293	2.387	nan	3.945	2.708	3.331	3.418	4.293
9301	chr3	52145550	52148326	+	0	NA	Intergenic	Intergenic	-41932	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding	5.789	3.331	1.124	4.893	2.791	1.066	7.473	5.823	4.568	5.002	2.548	1.907	7.004	8.158	5.617	7.165	5.173	5.454	1.286	1.309	0.615	1.253	0.625	0.206	7.737
991	chr1	185883607	185886466	+	0	NA	intron (NR_030555, intron 4 of 6)	intron (NR_030555, intron 4 of 6)	232274	NM_146106	226791	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	7.590	2.481	1.287	4.786	3.526	1.740	3.284	2.960	4.316	3.829	2.614	3.328	4.043	4.659	4.425	5.103	1.668	6.767	1.563	1.304	0.815	3.021	0.664	0.499	6.060
9107	chr2	180065822	180070026	+	0	NA	3' UTR (NM_178750, exon 11 of 11)	3' UTR (NM_178750, exon 11 of 11)	-2669	NM_001083328	52856	Mm.219658	NM_028422	ENSMUSG00000039069	Mtg2	1810011P19Rik|2900056P18Rik|D2Bwg0647e|Gtpbp5	mitochondrial ribosome associated GTPase 2	protein-coding	0.977	0.585	0.154	2.775	0.475	0.290	1.056	2.493	3.483	3.229	7.936	6.094	1.455	1.195	0.830	nan	0.764	nan	0.651	0.251	0.204	1.082	0.298	0.159	1.786
9446	chr3	88355793	88358658	+	0	NA	intron (NM_178246, intron 16 of 21)	intron (NM_178246, intron 16 of 21)	-7364	NM_198410	68957	Mm.441486	NM_198410	ENSMUSG00000041423	Paqr6	1500001B10Rik	progestin and adipoQ receptor family member VI	protein-coding	10.162	10.781	3.717	11.020	6.983	5.546	13.966	10.503	8.188	10.978	7.760	5.985	11.746	14.598	11.743	12.334	10.331	10.642	5.586	3.803	4.476	6.010	4.658	6.402	16.013
4773	chr14	65641520	65644948	+	0	NA	intron (NM_001195674, intron 17 of 18)	intron (NM_001195674, intron 17 of 18)	-23169	NM_028903	71145	Mm.83840	NM_028903	ENSMUSG00000022032	Scara5	4932433F15Rik|4933425F03Rik|AV278087|Tesr	scavenger receptor class A, member 5	protein-coding	6.260	5.053	3.485	2.268	1.302	0.860	3.443	2.464	4.030	5.418	0.847	1.177	0.874	1.351	2.232	6.458	5.005	5.821	0.633	nan	0.808	0.551	0.806	0.552	3.922
13095	chr7	31064507	31066344	+	0	NA	intron (NM_144556, intron 6 of 8)	intron (NM_144556, intron 6 of 8)	5490	NM_144556	243914	Mm.389870	NM_144556	ENSMUSG00000036560	Lgi4	Lgil3|clp	leucine-rich repeat LGI family, member 4	protein-coding	7.843	10.079	3.277	6.385	3.328	1.732	5.194	9.718	3.830	4.475	3.010	2.280	5.618	6.314	7.251	8.528	6.439	5.816	4.789	3.145	2.481	5.233	3.321	4.289	10.380
8507	chr2	103635733	103639369	+	0	NA	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	71241	NM_178890	99382	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	13.704	14.247	5.412	10.069	4.722	2.598	12.079	12.173	5.402	13.674	8.497	3.525	10.849	11.906	9.424	12.459	11.618	8.982	6.635	3.752	4.212	6.232	5.193	5.055	17.497
3535	chr12	81964935	81966003	+	0	NA	intron (NM_018814, intron 18 of 35)	(GGAA)n|Simple_repeat|Simple_repeat	105439	NM_018814	54604	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog (Drosophila)	protein-coding	5.834	0.636	0.731	1.898	2.764	2.457	2.578	1.233	2.352	3.233	4.481	1.053	1.668	3.872	1.511	nan	3.118	3.351	1.527	1.593	1.004	0.494	1.271	0.435	2.207
12048	chr6	8719846	8721758	+	0	NA	intron (NM_001252266, intron 5 of 11)	intron (NM_001252266, intron 5 of 11)	37656	NM_001252266	15893	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	10.085	0.935	0.612	4.651	3.412	1.022	5.903	12.228	4.715	5.286	1.512	3.285	7.668	9.317	9.817	13.675	11.391	7.020	3.054	2.524	0.820	1.320	3.630	2.663	9.374
2348	chr11	68244327	68246301	+	0	NA	intron (NM_008744, intron 5 of 6)	intron (NM_008744, intron 5 of 6)	24422	NR_105833	102465219		NR_105833	ENSMUSG00000099174	Mir6406	Gm27981|mmu-mir-6406	microRNA 6406	ncRNA	6.320	10.346	3.144	4.873	2.807	1.407	1.120	1.617	2.257	3.232	2.537	0.658	1.403	2.503	2.582	2.847	1.652	2.462	1.248	1.622	1.743	1.751	nan	1.137	4.610
14456	chr8	92876336	92880205	+	0	NA	intron (NM_173014, intron 7 of 13)	intron (NM_173014, intron 7 of 13)	22920	NM_173014	270084	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	A330042H22|Aytl1|Aytl1a|lpafat1	lysophosphatidylcholine acyltransferase 2	protein-coding	0.805	0.400	0.302	0.971	0.460	0.160	0.711	5.033	nan	0.665	0.204	1.908	3.093	1.273	1.745	1.296	1.335	1.101	nan	0.927	0.539	2.588	0.592	0.499	0.611
13078	chr7	30073504	30075101	+	0	NA	Intergenic	B1_Mm|SINE|Alu	-1479	NM_001253385	330502	Mm.295906	NM_177889	ENSMUSG00000098022	Zfp82	A030010D05|Krab16|Mszf3|Zfp-82	zinc finger protein 82	protein-coding	3.148	2.407	0.659	4.913	2.470	1.140	3.502	5.375	2.061	4.105	1.787	1.376	3.418	4.669	4.142	3.938	1.813	4.338	1.391	1.179	1.043	2.459	1.240	0.654	5.470
615	chr1	134086333	134101869	+	0	NA	Intergenic	Intergenic	-14946	NM_007570	12227	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.936	1.007	0.472	nan	1.261	0.578	0.979	0.428	2.212	2.155	9.944	3.173	0.815	nan	1.282	nan	1.025	1.694	2.525	1.092	0.904	2.789	1.699	1.469	nan
2246	chr11	58760797	58763974	+	0	NA	Intergenic	ORR1E-int|LTR|ERVL-MaLR	4718	NM_001011818	258064	Mm.377340	NM_001011818	ENSMUSG00000107677	Olfr316	MOR285-3P|MOR285-6_p	olfactory receptor 316	protein-coding	0.699	1.510	0.802	0.826	0.252	0.192	0.275	0.184	0.481	0.747	0.287	0.315	0.278	nan	0.793	0.616	0.340	0.610	6.657	3.763	2.245	6.277	4.192	3.321	nan
476	chr1	95720061	95722500	+	0	NA	Intergenic	Lx3B|LINE|L1	-4762	NR_040479	75381	Mm.417807	NR_040479	ENSMUSG00000100777	4930598F16Rik	-	RIKEN cDNA 4930598F16 gene	ncRNA	11.646	9.251	3.196	8.487	6.331	4.543	7.658	8.823	5.319	7.716	6.997	2.768	8.512	12.114	8.689	13.235	5.585	7.528	5.072	5.043	3.743	nan	5.877	4.938	10.703
1198	chr10	26552603	26554747	+	0	NA	Intergenic	Intergenic	120976	NR_033633	667572	Mm.482728	NR_033633	ENSMUSG00000098179	Gm8709	EG667572	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	3.149	0.802	0.596	1.699	2.234	1.789	4.229	3.477	3.295	2.373	0.775	1.307	3.729	2.922	2.635	3.353	5.245	3.023	0.701	1.108	0.598	0.582	0.860	0.390	1.514
1626	chr10	94381939	94386029	+	0	NA	Intergenic	Intergenic	-85281	NR_033209	215472	Mm.255656	NM_174999	ENSMUSG00000053420	Gm4792	E130012K09|EG215472	predicted gene 4792	ncRNA	1.910	8.269	3.809	1.736	0.662	0.364	0.350	0.600	1.128	0.938	nan	0.529	0.494	0.874	0.790	1.319	0.746	1.546	nan	0.568	0.379	nan	0.360	0.202	1.468
9336	chr3	58494288	58495828	+	0	NA	Intergenic	Lx6|LINE|L1	-30763	NM_001005509	229317	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	6.609	18.126	6.741	8.237	5.212	4.682	4.723	5.027	2.970	8.535	3.067	3.254	4.838	5.314	6.986	9.677	5.306	7.664	4.982	4.073	5.230	6.947	4.008	5.669	12.093
14280	chr8	71731862	71735023	+	0	NA	Intergenic	Lx7|LINE|L1	-7761	NM_028715	74015	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	5.991	4.342	1.598	4.506	2.559	0.898	4.660	5.695	4.459	4.608	2.728	2.484	6.702	7.156	6.852	10.535	7.737	5.844	nan	2.420	1.456	5.708	2.327	1.760	7.240
11349	chr5	73759974	73760767	+	0	NA	Intergenic	IMPB_01|Satellite|Satellite	108990	NM_178387	73472	Mm.87067	NM_178387	ENSMUSG00000029155	Spata18	1700067I02Rik	spermatogenesis associated 18	protein-coding	0.723	1.191	0.332	1.228	0.774	0.046	2.133	2.245	3.676	4.073	5.962	5.944	2.310	3.545	2.773	4.027	2.702	1.856	0.687	0.462		0.492	0.512	0.295	1.259
8648	chr2	128004778	128006914	+	0	NA	intron (NM_028765, intron 11 of 17)	L1MA8|LINE|L1	-120192	NM_207681	12125	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	4.443	2.047	1.053	4.675	2.785	1.679	3.215	4.669	4.016	4.336	2.075	1.658	2.730	5.727	3.953	5.184	3.587	5.950	nan	0.815	0.932	1.251	0.900	0.695	7.000
7566	chr19	10339788	10343252	+	0	NA	Intergenic	Intergenic	-36643	NM_198114	269060	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	3.554	1.456	0.981	3.403	2.831	1.911	4.586	8.648	nan	4.230	1.144	2.511	4.864	6.598	3.929	nan	5.649	5.113	1.118	1.675	2.403	3.282	2.351	2.851	3.714
2141	chr11	49080019	49081129	+	0	NA	intron (NM_001271677, intron 1 of 2)	L1_Rod|LINE|L1	3987	NM_001271677	15953	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	3.408	0.943	0.956	1.474	2.960	1.347	4.749	5.470	1.826	1.485	0.455	0.267	4.027	4.268	3.968	3.990	4.526	3.384	nan	0.771	0.405	nan	nan	0.282	2.348
13595	chr7	117982312	117984764	+	0	NA	Intergenic	Intergenic	132609	NM_170669	267019	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	4.563	2.083	1.170	4.770	3.836	3.740	3.200	7.967	5.816	4.763	2.555	2.535	6.458	5.309	4.424	4.418	5.921	7.133	4.438	3.035	2.637	3.552	3.992	4.369	2.483
6146	chr16	58516974	58524898	+	0	NA	intron (NM_018784, intron 1 of 10)	intron (NM_018784, intron 1 of 10)	2376	NM_018784	54613	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	5.992	2.939	1.076	6.608	4.237	3.521	6.651	4.101	3.003	3.255	1.529	0.963	2.315	4.396	8.291	8.136	7.018	5.207	nan	2.928	2.449	4.483	2.117	1.840	9.168
13797	chr7	136805284	136841213	+	0	NA	Intergenic	Intergenic	-71363	NM_008598	17314	Mm.440219	NM_008598	ENSMUSG00000054612	Mgmt	AGT|AI267024|Agat	O-6-methylguanine-DNA methyltransferase	protein-coding	3.706	nan	0.308	3.201	2.791	1.466	3.234	4.417	nan	5.343	1.431	1.101	4.606	5.994	6.600	7.765	4.613	6.777	0.679	0.636	0.462	0.934	0.623	0.413	6.642
14599	chr8	112323336	112325037	+	0	NA	Intergenic	Intergenic	245389	NR_132433	102640845	Mm.405615	NR_132433	ENSMUSG00000098075	Gm26994	-	predicted gene, 26994	ncRNA	4.628	1.475	0.412	2.386	3.582	1.679	2.847	4.468	3.491	3.116	1.367	1.663	3.472	5.858	4.311	4.814	4.020	4.920	0.971	1.241	0.756	nan	0.993	0.628	2.777
12474	chr6	92803916	92807793	+	0	NA	intron (NM_175314, intron 21 of 29)	intron (NM_175314, intron 21 of 29)	95587	NM_175314	101401	Mm.158235	NM_175314	ENSMUSG00000030022	Adamts9	1810011L16Rik|8430403M15Rik|AW743315|E030027K14Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 9	protein-coding	6.091	0.562	0.135	nan	2.304	1.513	11.294	4.830	3.746	3.091	0.327	0.267	10.461	7.428	8.923	11.204	11.499	5.712	nan	0.581	0.347	0.654	0.480	0.271	5.455
7705	chr19	32375608	32380667	+	0	NA	intron (NM_144792, intron 1 of 9)	intron (NM_144792, intron 1 of 9)	10317	NM_144792	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	6.196	1.647	0.788	6.612	5.600	2.795	7.515	8.409	5.829	6.087	nan	3.438	5.488	6.860	5.244	6.642	7.021	7.001	nan	1.278	0.900	1.590	nan	1.487	4.502
12765	chr6	134169565	134173425	+	0	NA	intron (NM_001303102, intron 3 of 8)	ORR1D2|LTR|ERVL-MaLR	135795	NM_007961	14011	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	4.069	6.653	2.539	3.226	1.357	0.745	3.924	6.027	3.771	3.054	2.209	1.121	2.760	3.103	6.568	5.635	3.499	4.021	nan	0.844	0.635	1.493	0.551	0.389	4.222
2854	chr11	103221304	103229022	+	0	NA	intron (NM_016896, intron 12 of 15)	intron (NM_016896, intron 12 of 15)	-6731	NM_177801	328019	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	7.945	4.472	1.548	8.126	2.777	1.627	6.739	8.256	nan	7.268	5.558	2.959	6.949	10.153	9.155	10.090	6.189	8.277	1.550	0.967	0.965	nan	0.770	0.778	12.502
13716	chr7	130189173	130191538	+	0	NA	intron (NM_001347638, intron 7 of 15)	intron (NM_001347638, intron 7 of 15)	76453	NM_010207	14183	Mm.16340	NM_010207	ENSMUSG00000030849	Fgfr2	AU043015|AW556123|Bek|Fgfr-2|Fgfr-7|Fgfr7|KGFR|KGFRTr|svs	fibroblast growth factor receptor 2	protein-coding	4.363	0.920	0.700	2.411	1.467	0.573	4.481	6.600	3.315	3.559	6.527	3.148	4.927	5.634	nan	5.172	3.579	5.469	2.246	0.824	0.570	2.337	1.469	1.212	4.263
7140	chr18	35970111	35977740	+	0	NA	intron (NR_110349, intron 1 of 14)	intron (NR_110349, intron 1 of 14)	9095	NR_110349	74002	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	2.267	2.036	0.975	1.818	1.182	0.752	1.500	7.476	1.617	1.764	0.875	0.931	1.569	nan	2.224	1.867	1.450	2.035	5.147	2.352	1.686	6.301	4.007	2.805	1.876
6202	chr16	91761378	91763483	+	0	NA	intron (NM_001110275, intron 1 of 28)	intron (NM_001110275, intron 1 of 28)	33059	NM_010587	16443	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	5.582	nan	0.269	1.649	1.565	0.646	1.565	2.859	2.335	1.957	0.764	0.929	5.304	5.195	2.720	3.346	3.193	3.180	2.943	1.248	0.408	nan	1.494	0.578	2.919
6122	chr16	52338574	52349222	+	0	NA	intron (NM_009655, intron 1 of 15)	intron (NM_009655, intron 1 of 15)	109183	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	6.050	0.550	0.495	3.362	5.356	3.424	3.935	5.540	4.792	5.217	2.607	2.443	6.633	6.305	4.244	5.252	5.118	6.081	1.018	1.207	0.835	0.551	1.204	1.029	2.723
1781	chr10	117519823	117522206	+	0	NA	Intergenic	Intergenic	-108486	NM_027468	70574	Mm.339332	NM_027468	ENSMUSG00000020183	Cpm	1110060I01Rik|5730456K23Rik|AA589379|E030045M14Rik	carboxypeptidase M	protein-coding	1.727	15.558	8.757	2.338	1.481	1.598	0.485	0.720	1.355	1.366	1.249	0.354	0.571	0.659	0.932	1.162	1.442	nan	0.742	1.525	1.574	1.340	0.418	0.530	1.005
7506	chr19	6497090	6499294	+	0	NA	intron (NM_001205234, intron 17 of 22)	CpG	44878	NM_009203	20521	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.390	0.619	0.472	0.422	0.545	0.237	0.545	0.556	nan	0.605	0.227	0.241	0.042	0.451	0.292	nan	0.450	0.398	4.535	6.212	6.108	5.887	11.498	11.851	0.537
7109	chr18	34053933	34056185	+	0	NA	Intergenic	Intergenic	-47853	NM_013512	13824	Mm.3465	NM_013512	ENSMUSG00000024376	Epb41l4a	Epb4.1l4|Epb4.1l4a|NBL4	erythrocyte membrane protein band 4.1 like 4a	protein-coding	0.782	0.475	0.351	0.347	0.726	0.163	0.439	0.672	0.816	0.347	4.344	1.499	0.370	nan	0.458	nan	0.547	0.835	0.798	0.946	0.277	0.655	0.449	0.322	0.566
2157	chr11	51204173	51206633	+	0	NA	intron (NR_110444, intron 3 of 4)	MusHAL1|LINE|L1	15015	NR_110444	71297	Mm.390420	NR_110444	ENSMUSG00000086646	Platr20	5133400J02Rik	pluripotency associated transcript 20	ncRNA	4.003	0.459	0.263	4.008	3.552	2.163	1.277	1.992	4.907	7.227	2.853	0.974	6.435	9.434	3.356	3.162	5.323	4.634	nan	1.843	1.184	nan	nan	0.991	5.319
15590	chr9	119908472	119912434	+	0	NA	intron (NM_026236, intron 8 of 18)	intron (NM_026236, intron 8 of 18)	15558	NM_026236	67561	Mm.104789	NM_026236	ENSMUSG00000032512	Wdr48	8430408H12Rik|Uaf1|mKIAA1449	WD repeat domain 48	protein-coding	6.083	3.642	1.401	7.500	4.676	2.599	3.224	3.672	4.176	5.232	3.703	1.930	2.720	5.165	3.906	5.439	3.052	5.450	1.803	2.212	1.371	2.241	nan	1.257	5.961
15712	chrX	39402988	39406145	+	0	NA	Intergenic	MamGypLTR1b|LTR|Gypsy	58300	NM_001177380	78631	Mm.243738	NM_001177380	ENSMUSG00000079619	Cypt15	1700085A12Rik	cysteine-rich perinuclear theca 15	protein-coding	3.672	0.419	0.536	2.004	4.306	3.604	6.548	5.055	4.136	4.560	1.370	1.153	5.411	5.800	3.629	3.968	8.049	3.570	0.553	1.104	1.053	0.378	0.642	0.978	3.435
7085	chr18	25713577	25716345	+	0	NA	intron (NM_001146292, intron 1 of 12)	intron (NM_001146292, intron 1 of 12)	39022	NM_133195	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	5.189	0.742	0.394	0.767	1.390	0.405	4.572	11.896	2.288	1.837	5.928	2.718	5.549	2.946	2.836	3.123	4.464	3.329	nan	1.679	0.970	2.034	2.201	1.573	4.923
3046	chr11	117791278	117793256	+	0	NA	intron (NM_001195089, intron 15 of 15)	intron (NM_001195089, intron 15 of 15)	-5393	NM_029964	77727	Mm.159981	NM_029964	ENSMUSG00000025573	6030468B19Rik	-	RIKEN cDNA 6030468B19 gene	protein-coding	3.000	nan	0.324	3.910	2.720	1.491	nan	2.807	2.769	5.546	1.732	1.708	2.580	3.918	2.816	2.222	1.085	nan	5.554	nan	3.769	8.907	4.438	3.968	2.834
6761	chr17	57015854	57017731	+	0	NA	Intergenic	Intergenic	-5504	NM_133801	98053	Mm.24632	NM_133801	ENSMUSG00000002658	Gtf2f1	2810405L04Rik|C76800|RAP74	general transcription factor IIF, polypeptide 1	protein-coding	2.996	nan	0.472	2.276	4.665	4.247	5.175	3.761	3.078	3.114	5.141	2.483	3.484	5.612	3.158	4.228	2.284	3.210	1.182	0.995	0.907	1.271	0.636	0.546	4.321
575	chr1	129910255	129914737	+	0	NA	intron (NM_172485, intron 12 of 27)	L1M2|LINE|L1	510547	NM_007827	13137	Mm.436759	NM_007827	ENSMUSG00000026401	Cd55b	AI323748|Daf|Daf-TM|Daf2|TM-DAF	CD55 molecule, decay accelerating factor for complement B	protein-coding	4.586	nan	0.563	1.428	1.207	0.772	2.251	1.823	2.133	2.069	2.592	0.924	2.755	2.881	3.477	5.280	3.809	4.005	nan	0.617	0.362	0.979	0.556	0.390	3.584
15502	chr9	108282957	108284658	+	0	NA	Intergenic	B3A|SINE|B2	-6650	NM_025449	66257	Mm.10407	NM_025449	ENSMUSG00000032606	Nicn1	1500032A17Rik	nicolin 1	protein-coding	2.875	0.508	0.653	2.583	1.857	2.369	1.039	0.852	2.886	4.052	0.629	0.627	2.909	5.332	2.600	3.349	2.868	2.608	0.495	0.714	0.728	0.313	0.664	0.314	3.600
8186	chr2	35351154	35352568	+	0	NA	Intergenic	L1MC3|LINE|L1	-14852	NM_013515	13830	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	5.452	18.530	5.614	3.198	2.395	0.256	1.891	2.168	2.960	3.171	3.480	2.676	1.860	3.468	2.043	2.852	1.898	2.496	1.695	1.742	0.546	1.064	0.984	0.407	3.948
13615	chr7	119400448	119424797	+	0	NA	Intergenic	Intergenic	46650	NM_025989	67133	Mm.46403	NM_025989	ENSMUSG00000030954	Gp2	2310037I18Rik|AV060639	glycoprotein 2 (zymogen granule membrane)	protein-coding	4.375	0.557	0.321	4.708	3.762	1.745	7.551	5.272	3.633	4.737	1.485	0.827	6.597	nan	7.987	6.932	3.853	7.062	2.369	1.207	0.710	1.779	2.259	1.482	8.059
1835	chr10	126562524	126567960	+	0	NA	Intergenic	Intergenic	145149	NR_105841	102465224		NR_105841	ENSMUSG00000098756	Mir378d	Gm27650|mmu-mir-378d	microRNA 378d	ncRNA	5.256	nan	1.429	2.897	5.801	3.664	4.270	2.317	2.777	3.377	4.578	3.440	4.506	5.327	3.211	3.849	5.182	3.955	1.198	1.152	1.446	0.797	nan	1.144	3.460
12826	chr6	142305105	142306597	+	0	NA	intron (NM_130861, intron 1 of 14)	intron (NM_130861, intron 1 of 14)	7426	NM_010491	15874	Mm.415	NM_010491	ENSMUSG00000041681	Iapp	DAP	islet amyloid polypeptide	protein-coding	0.745	0.912	0.434	1.552	1.212	0.380	2.607	1.411	1.734	1.763	0.365	0.430	3.596	4.466	4.395	5.757	5.149	1.823	nan	0.396	0.378	0.423	0.431	0.174	nan
10809	chr4	140684550	140689502	+	0	NA	Intergenic	Intergenic	-14447	NM_173867	108911	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	nan	1.817	1.300	4.207	5.306	3.584	8.971	7.467	nan	5.039	2.615	2.823	6.091	12.802	7.546	8.245	5.100	nan	0.917	1.252	0.837	1.635	nan	0.649	9.865
9912	chr4	8573463	8575489	+	0	NA	intron (NM_021518, intron 3 of 7)	ID4|SINE|ID	38832	NM_021518	59021	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	6.220	9.770	6.732	7.989	6.291	3.273	2.105	4.330	5.684	9.033	3.589	3.533	4.116	5.380	5.078	5.191	4.012	5.876	6.066	nan	3.361	6.586	3.965	4.522	7.465
6549	chr17	33531105	33532052	+	0	NA	intron (NR_137629, intron 4 of 23)	intron (NR_137629, intron 4 of 23)	7493	NM_001329147	224697	Mm.29304	NM_172619	ENSMUSG00000024299	Adamts10	9430006O18|AW045948|Adam-ts10|Adamts-10|Znmp	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	protein-coding	5.603	8.923	3.709	6.701	2.474	1.188	5.290	3.790	4.579	3.769	4.630	1.901	4.176	4.959	6.189	9.736	5.350	6.031	3.038	2.327	1.664	3.629	2.964	2.862	8.679
5523	chr15	85213633	85214828	+	0	NA	intron (NM_001347088, intron 1 of 14)	intron (NM_001347088, intron 1 of 14)	8222	NM_010180	14114	Mm.297992	NM_010180	ENSMUSG00000006369	Fbln1	-	fibulin 1	protein-coding	3.903	0.832	0.307	3.882	1.635	2.713	1.660	3.473	3.328	3.262	1.395	1.524	5.618	4.169	3.564	3.854	2.544	4.343	nan	0.726	0.559	nan	0.829	0.537	3.427
14656	chr8	120302693	120304598	+	0	NA	Intergenic	Intergenic	-75415	NR_110496	434353	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	1.033	6.876	5.675	0.924	1.490	0.288	2.163	3.578	2.431	1.854	3.744	1.665	1.953	1.761	1.173	nan	1.561	1.059	0.919	1.811	0.942	0.756	0.794	0.698	0.561
4886	chr14	79508978	79510802	+	0	NA	intron (NM_007920, intron 1 of 8)	B3|SINE|B2	-5784	NM_001286412	13709	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	6.098	0.672	0.708	3.632	9.195	5.080	8.408	9.300	5.307	7.071	2.727	3.268	6.156	10.386	6.028	5.742	3.153	5.411	2.014	1.536	1.179	1.640	2.617	2.482	4.362
7126	chr18	35274195	35280165	+	0	NA	intron (NM_030749, intron 7 of 9)	Lx9|LINE|L1	-62156	NM_178005	107065	Mm.39900	NM_178005	ENSMUSG00000071862	Lrrtm2	AI851755|BB129880|C630011A14Rik|mKIAA0416	leucine rich repeat transmembrane neuronal 2	protein-coding	8.690	2.913	0.850	7.734	7.237	5.045	8.657	7.982	5.393	9.646	5.534	4.417	10.075	10.537	6.915	8.116	7.566	9.136	3.149	1.840	1.634	2.990	2.602	2.403	11.346
9721	chr3	115891331	115894289	+	0	NA	exon (NM_027193, exon 3 of 8)	exon (NM_027193, exon 3 of 8)	4627	NM_027193	69740	Mm.5915	NM_027193	ENSMUSG00000033554	Dph5	2410012M04Rik|AU045680|C80186	diphthamide biosynthesis 5	protein-coding	5.499	1.627	0.890	3.302	2.233	0.878	8.014	5.241	4.785	4.454	4.125	2.350	6.662	3.699	7.429	5.898	5.284	6.811	1.739	0.951	0.510	1.446	nan	0.554	2.813
11769	chr5	134622532	134624810	+	0	NA	intron (NM_001312867, intron 4 of 5)	intron (NM_001312867, intron 4 of 5)	-8646	NM_020044	56743	Mm.391375	NM_020044	ENSMUSG00000040751	Lat2	AW125574|LAB|NTAL|WSCR5|Wbscr15|Wbscr5	linker for activation of T cells family, member 2	protein-coding	1.952	1.290	0.397	3.562	2.524	1.627	3.451	1.952	2.781	3.297	3.161	0.835	3.780	5.914	4.474	3.691	1.629	3.911	1.410	0.775	0.552	2.006	nan	0.408	3.032
6848	chr17	73266839	73269265	+	0	NA	Intergenic	Intergenic	131244	NM_001033444	381122	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	5.757	21.112	7.209	9.681	2.631	1.706	2.110	nan	3.874	5.729	3.933	3.910	1.833	3.010	3.318	4.061	2.796	3.665	5.850	4.613	4.690	9.011	5.192	5.461	6.689
7062	chr18	21456410	21459323	+	0	NA	Intergenic	Intergenic	-157727	NM_001033445	381126	Mm.312276	NM_001033445	ENSMUSG00000042680	Garem1	C86169|Fam59a|Garem|Gm944|mKIAA4238	GRB2 associated regulator of MAPK1 subtype 1	protein-coding	4.115	1.887	0.608	3.021	1.230	0.660	4.026	6.943	2.022	5.055	2.016	1.211	4.559	3.673	3.889	4.752	3.320	3.439	2.102	1.448	1.524	2.950	1.924	2.366	7.456
12496	chr6	94584411	94586306	+	0	NA	intron (NM_026255, intron 6 of 9)	intron (NM_026255, intron 6 of 9)	21057	NR_106008	102466992		NR_106008	ENSMUSG00000098531	Mir7041	Gm27872|mmu-mir-7041	microRNA 7041	ncRNA	2.486	3.547	1.902	1.490	1.242	0.478	4.222	7.477	2.305	1.906	6.038	4.511	2.773	5.194	nan	nan	2.088	2.755	nan	nan	1.137	2.094	1.569	0.799	1.618
14024	chr8	12727262	12734315	+	0	NA	Intergenic	ORR1D1-int|LTR|ERVL-MaLR	-11661	NR_033546	100038554	Mm.367723	NR_033546	ENSMUSG00000074469	Gm15348	ENSMUSG00000074469|OTTMUSG00000020606	predicted gene 15348	ncRNA	4.814	0.547	0.255	3.974	5.469	3.775	2.019	3.388	7.252	8.488	5.407	1.588	5.001	6.641	4.308	5.076	3.831	6.990	0.911	0.862	0.681	0.798	0.744	0.479	2.904
14325	chr8	73986964	73989473	+	0	NA	Intergenic	Lx3_Mus|LINE|L1	-634678	NM_010687	16795	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	5.167	8.957	1.637	7.928	1.808	0.956	nan	5.915	nan	5.302	3.206	1.746	5.980	6.637	7.440	9.849	4.651	6.441	4.975	1.617	1.771	7.531	2.067	2.111	10.849
12383	chr6	86472240	86478751	+	0	NA	intron (NR_131125, intron 2 of 4)	intron (NR_131125, intron 2 of 4)	5335	NR_131125	320486	Mm.391625	NR_131125	ENSMUSG00000085589	A430078I02Rik	T25621	RIKEN cDNA A430078I02 gene	ncRNA	11.513	14.518	4.487	13.149	5.158	3.171	15.209	11.820	7.872	13.391	8.696	5.210	13.660	13.598	14.659	16.713	11.413	12.995	nan	3.554	3.736	9.231	4.241	5.379	17.155
12582	chr6	113048797	113051093	+	0	NA	intron (NM_008188, intron 3 of 9)	MTA_Mm|LTR|ERVL-MaLR	3618	NM_008188	14911	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	6.591	3.319	2.286	4.267	4.887	2.060	5.598	8.385	4.448	4.177	4.894	3.379	6.389	7.012	6.025	6.018	6.696	5.653	5.275	2.821	1.555	3.227	nan	2.232	2.601
10741	chr4	137204308	137209613	+	0	NA	Intergenic	RLTR17B_Mm|LTR|ERVK	-41894	NR_040443	100503595	Mm.421314	NR_040443	ENSMUSG00000085833	Gm13003	OTTMUSG00000009822	predicted gene 13003	ncRNA	nan	0.717	0.318	0.908	0.865	0.351	3.593	2.227	nan	0.560	1.102	2.025	2.021	4.769	2.561	1.138	0.661	nan	4.450	1.752	0.934	6.876	nan	1.301	3.629
1038	chr1	193778587	193781985	+	0	NA	Intergenic	Intergenic	-272756	NR_029592	387201		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	5.262	4.417	0.840	9.054	2.186	1.134	2.619	3.162	3.033	3.611	2.351	1.448	2.231	3.585	3.401	nan	2.779	5.614	0.825	1.002	1.518	1.185	nan	0.482	6.426
2363	chr11	68947361	68948538	+	0	NA	intron (NM_177566, intron 9 of 15)	MIRb|SINE|MIR	8909	NM_177566	442801	Mm.376147	NM_177566	ENSMUSG00000052921	Arhgef15	D130071N09|D530030K12Rik|E5	Rho guanine nucleotide exchange factor (GEF) 15	protein-coding	3.646	1.988	0.641	3.351	0.746	0.343	1.228	3.227	1.783	2.865	1.750	0.901	2.203	3.976	2.885	4.383	1.535	2.488	1.563	0.919	0.525	2.919	nan	0.594	2.833
9570	chr3	97011390	97013856	+	0	NA	Intergenic	Intergenic	-19779	NM_001271628	14613	Mm.281816	NM_008121	ENSMUSG00000057123	Gja5	5730555N10Rik|Cnx40|Cx40|Gja-5	gap junction protein, alpha 5	protein-coding	1.045	2.508	0.596	1.647	0.606	0.189	0.425	0.887	0.621	0.806	nan	0.204	0.773	0.750	0.891	2.717	0.835	1.669	1.360	0.617	0.619	3.857	0.383	0.447	2.559
14402	chr8	86422442	86426381	+	0	NA	Intergenic	Intergenic	142179	NM_172912	244562	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding	2.323	3.570	1.118	3.520	1.535	1.274	2.378	1.627	nan	6.091	1.109	1.161	1.730	4.101	2.889	2.653	0.981	2.719	4.460	3.276	3.395	5.742	3.787	4.967	7.464
3088	chr11	119690816	119700135	+	0	NA	intron (NM_028898, intron 3 of 33)	intron (NM_028898, intron 3 of 33)	92570	NM_028898	74370	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	0.692	nan	0.449	0.764	0.480	0.264	nan	nan	1.063	nan	0.780	2.124	0.404	0.564	0.622	0.744	0.438	nan	6.440	nan	2.590	6.758	5.969	4.232	0.592
14794	chr8	128300673	128302234	+	0	NA	Intergenic	Intergenic	-23228	NR_105822	102465212		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	5.413	nan	0.201	2.563	0.651	0.492	3.634	6.060	1.941	3.898	0.707	1.113	4.406	5.052	4.954	7.098	4.699	3.065	nan	0.406	0.235	nan	0.445	nan	6.342
5910	chr16	23037514	23041743	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-10527	NM_001102410	385643	Mm.440414	NM_201375	ENSMUSG00000060459	Kng2	-	kininogen 2	protein-coding	4.199	0.576	0.460	0.831	2.247	1.625	1.898	5.138	1.492	nan	0.688	0.180	3.584	3.232	2.073	3.532	3.425	2.787	0.771	0.768	0.639	0.997	nan	0.400	3.636
1777	chr10	117265720	117269123	+	0	NA	Intergenic	Intergenic	14851	NM_017372	17105	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	3.054	7.289	4.064	3.021	2.276	1.647	1.147	1.933	2.584	2.408	1.242	1.241	1.289	1.944	1.972	2.471	2.131	nan	1.188	1.438	1.029	1.216	0.707	0.524	1.818
15361	chr9	85351949	85353710	+	0	NA	Intergenic	Intergenic	-25679	NM_001160379	212943	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0.695	0.600	0.689	0.541	0.559	0.047	0.071	0.766	0.781	0.615	5.115	1.458	0.572	0.348	0.483	0.676	0.280	0.702	0.847	0.672	0.139	0.841	0.388	0.408	0.388
10566	chr4	129277483	129278937	+	0	NA	Intergenic	Intergenic	-9411	NM_023485	68828	Mm.132243	NM_023485	ENSMUSG00000001333	Sync	1110057H03Rik|SNIP4	syncoilin	protein-coding	7.598	14.510	3.745	11.983	3.160	3.216	4.921	5.675	4.156	8.480	6.387	3.378	4.261	6.498	8.242	8.888	2.996	8.854	6.985	2.950	5.234	8.767	3.696	4.831	14.547
354	chr1	82286557	82288730	+	0	NA	exon (NM_010570, exon 1 of 2)	exon (NM_010570, exon 1 of 2)	3796	NM_010570	16367	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding	6.981	1.754	0.400	7.059	1.726	1.640	4.510	4.889	4.108	8.607	7.841	3.228	4.656	4.848	6.288	10.696	6.330	7.734	4.514	2.117	3.357	4.676	4.328	5.990	14.954
15484	chr9	107490121	107494092	+	0	NA	intron (NM_001174047, intron 3 of 38)	intron (NM_001174047, intron 3 of 38)	-41839	NM_019704	56395	Mm.260153	NM_019704	ENSMUSG00000010045	Tmem115	C78915|Pl6|Pp6	transmembrane protein 115	protein-coding	3.614	2.960	0.952	5.035	1.437	0.925	4.051	6.261	nan	nan	2.893	1.524	5.109	5.709	6.287	7.955	2.783	6.037	2.620	1.012	0.782	2.975	0.441	0.472	11.535
3878	chr13	23527745	23529919	+	0	NA	Intergenic	Intergenic	-2212	NM_153173	69386	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	4.798	4.596	2.926	3.732	4.235	2.427	3.780	4.400	3.792	3.863	4.211	2.873	3.269	6.117	4.007	4.290	3.367	4.470	3.048	3.735	2.807	2.868	3.502	3.250	3.317
10915	chr4	149861929	149866259	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	-89827	NM_027460	70556	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	2.490	3.618	1.751	2.736	1.529	0.792	2.047	2.649	2.126	2.191	2.094	1.615	2.209	2.665	2.743	2.665	1.880	2.320	5.405	3.223	1.413	5.493	3.235	2.834	2.391
1064	chr1	196465688	196470696	+	0	NA	Intergenic	Intergenic	-1291477	NM_007758	12902	Mm.235387	NM_007758	ENSMUSG00000026616	Cr2	C3DR|CD21|CD35|Cr-1|Cr-2|Cr1	complement receptor 2	protein-coding	5.132	0.756	0.362	4.658	2.765	0.877	4.143	3.874	3.869	4.553	2.060	1.133	5.843	6.967	4.981	7.423	3.357	6.888	3.222	1.271	0.560	3.107	nan	0.902	5.527
13678	chr7	125269648	125270909	+	0	NA	Intergenic	Intergenic	79508	NR_045804	71208	Mm.159465	NM_172408	ENSMUSG00000045928	4933440M02Rik	-	RIKEN cDNA 4933440M02 gene	ncRNA	4.141	2.430	2.050	3.334	5.127	6.259	1.402	4.541	3.026	4.106	1.060	1.194	2.880	4.407	2.073	2.703	2.682	3.804	3.144	1.562	2.224	1.556	3.960	3.199	2.947
11762	chr5	130705909	130707557	+	0	NA	intron (NM_021371, intron 4 of 5)	intron (NM_021371, intron 4 of 5)	257941	NM_021371	140904	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	1.071	0.751	0.547	1.531	0.976	1.182	1.929	2.451	2.079	2.262	0.584	0.549	2.240	3.235	2.286	1.928	3.008	1.351	nan	1.387	1.041	0.573	nan	0.805	2.024
11208	chr5	44171071	44180727	+	0	NA	3' UTR (NM_173764, exon 14 of 14)	3' UTR (NM_173764, exon 14 of 14)	50707	NM_173764	231225	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	6.296	3.597	1.349	5.862	4.798	2.899	5.911	6.440	5.373	7.441	5.028	4.205	5.876	7.306	6.882	6.670	nan	7.123	2.274	1.810	1.475	2.711	2.153	2.200	5.940
10622	chr4	132109893	132112460	+	0	NA	3' UTR (NM_013622, exon 3 of 3)	3' UTR (NM_013622, exon 3 of 3)	33310	NM_013622	18386	Mm.5243	NM_013622	ENSMUSG00000050511	Oprd1	DOR|DOR-1|Nbor|mDOR	opioid receptor, delta 1	protein-coding	4.086	1.690	0.620	4.908	3.897	2.272	3.686	4.354	4.889	4.842	8.831	2.423	4.299	5.623	4.782	4.328	1.941	7.095	0.880	0.803	0.859	1.201	0.507	0.323	5.953
12246	chr6	53512833	53515348	+	0	NA	intron (NM_001327821, intron 5 of 10)	Lx5|LINE|L1	-59284	NM_172728	231991	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.571	0.593	0.235	0.669	0.592	0.540	0.520	1.156	1.046	0.704	6.317	4.532	0.877	0.831	0.960	nan	nan	0.844	nan	0.884	0.390	1.629	0.689	0.568	0.667
7165	chr18	36893437	36895675	+	0	NA	Intergenic	Lx3_Mus|LINE|L1	-25749	NR_076393	627427		NR_076393	ENSMUSG00000063514	Gm6756	EG627427	3-phosphoglycerate dehydrogenase pseudogene	pseudo	12.752	9.843	4.444	10.428	6.362	3.246	11.426	14.000	6.459	8.968	7.328	6.152	11.816	11.611	12.308	11.002	10.229	11.411	4.965	3.147	2.261	6.206	3.337	3.009	13.876
12080	chr6	21935353	21938808	+	0	NA	Intergenic	ORR1B1|LTR|ERVL-MaLR	-12491	NM_001311061	71777	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	2.063	nan	1.257	3.625	1.334	0.287	1.102	1.615	nan	2.012	0.657	0.866	0.986	1.744	2.100	2.840	1.248	2.286	3.417	5.090	3.562	4.447	4.710	3.248	2.240
7761	chr19	40732241	40742437	+	0	NA	intron (NM_001304721, intron 9 of 9)	intron (NM_001304721, intron 9 of 9)	77569	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	7.574	3.679	1.586	8.211	7.838	4.727	2.767	8.287	6.700	8.489	2.319	1.181	4.796	7.619	7.006	10.234	9.428	8.281	0.703	1.535	0.978	0.493	0.678	0.441	8.614
4225	chr13	64005595	64008582	+	0	NA	Intergenic	MTE2a|LTR|ERVL-MaLR	82113	NM_008291	15487	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	2.353	0.890	0.740	1.321	1.560	0.640	1.069	1.834	1.828	2.449	1.162	0.541	1.884	3.771	1.430	nan	2.356	1.371	4.118	3.741	3.516	3.208	3.482	2.248	2.500
10857	chr4	144640874	144643801	+	0	NA	Intergenic	Intergenic	28630	NM_001081248	435815	Mm.439623	NM_001081248	ENSMUSG00000070609	Gm13177	OTTMUSG00000010747	predicted gene 13177	protein-coding	2.222	2.522	0.742	2.838	1.368	0.556	2.493	4.530	3.820	4.032	2.402	0.944	3.065	2.061	2.772	4.632	1.420	4.141	1.186	0.471	0.209	0.709	0.668	0.410	2.630
2734	chr11	97859127	97863093	+	0	NA	intron (NM_001081435, intron 7 of 10)	B1_Mus2|SINE|Alu	20330	NM_001080935	68127	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	1.943	17.745	7.771	2.309	1.191	1.253	0.954	1.860	1.348	1.609	0.966	1.176	1.224	1.217	1.428	1.645	nan	1.286	1.606	nan	1.870	1.221	nan	nan	1.372
12351	chr6	83080364	83087695	+	0	NA	Intergenic	Intergenic	-2336	NM_010692	16815	Mm.20359	NM_010692	ENSMUSG00000034968	Lbx2	Lbx2h	ladybird homeobox homolog 2 (Drosophila)	protein-coding	7.501	1.101	0.583	5.809	3.875	2.903	13.094	8.954	5.519	8.104	4.706	2.113	12.215	12.705	10.273	13.684	11.060	7.609	nan	1.718	1.846	2.838	2.096	2.053	12.298
1217	chr10	39344626	39345890	+	0	NA	Intergenic	Intergenic	-24541	NM_001122892	14360	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	2.615	2.031	1.372	3.285	1.343	0.735	2.641	3.838	1.896	2.158	2.504	2.134	2.170	3.472	2.961	3.840	2.658	2.491	3.697	2.225	1.222	4.303	3.701	2.029	3.658
3240	chr12	25887703	25889686	+	0	NA	Intergenic	Intergenic	321811	NR_131149	629481	Mm.390460	NR_131149		Gm29687	-	predicted gene, 29687	ncRNA	5.196	2.049	0.609	1.369	1.292	0.309	4.691	5.833	1.911	1.932	3.987	0.589	4.405	5.721	4.528	6.852	2.173	2.605	0.629	1.008	0.315	0.597	0.438	0.292	5.341
15614	chr9	121627343	121629010	+	0	NA	intron (NM_026915, intron 1 of 5)	L1M4c|LINE|L1	13390	NM_026915	69032	Mm.33351	NM_026915	ENSMUSG00000032530	Lyzl4	1810009N24Rik|AI504271|Lyc4|Lyza	lysozyme-like 4	protein-coding	8.807	14.608	4.537	11.238	5.282	4.709	7.158	7.952	5.832	14.565	8.160	5.474	8.596	9.921	9.382	12.066	5.322	9.327	4.847	2.533	3.865	7.475	nan	6.959	19.224
11065	chr5	23847473	23852198	+	0	NA	promoter-TSS (NR_045042)	promoter-TSS (NR_045042)	-762	NR_045042	67194	Mm.423733	NR_045040	ENSMUSG00000097180	2700038G22Rik	-	RIKEN cDNA 2700038G22 gene	ncRNA	0.926	2.326	0.897	nan	0.588	0.336	0.732	0.731	1.185	1.482	0.357	0.459	0.613	1.914	1.134	1.212	0.666	1.380	10.535	6.675	4.351	8.684	11.032	7.606	1.497
13821	chr7	139613717	139615017	+	0	NA	intron (NM_001302546, intron 48 of 58)	intron (NM_001302546, intron 48 of 58)	-31570	NR_027857	14912	Mm.28308	NM_183248	ENSMUSG00000041309	Nkx6-2	Gtx|Nkx6.2	NK6 homeobox 2	protein-coding	2.701	nan	0.760	1.587	2.331	1.763	1.733	0.765	nan	2.636	0.809	0.634	1.825	3.368	1.495	1.068	1.154	2.215	0.380	0.536	0.462	0.411	0.480	0.419	1.732
2750	chr11	98655209	98658384	+	0	NA	intron (NM_029727, intron 9 of 10)	B1_Mur1|SINE|Alu	-7555	NM_021347	57911	Mm.458085	NM_021347	ENSMUSG00000017204	Gsdma	BB149167|Gsdm|Gsdm1|Gsdma1|H312E	gasdermin A	protein-coding	12.384	17.055	5.688	15.719	8.100	7.134	10.864	10.642	8.350	21.086	10.984	5.988	10.625	13.651	11.745	13.589	9.723	13.240	7.548	nan	7.806	8.867	5.431	7.992	20.042
4165	chr13	55793493	55795431	+	0	NA	intron (NM_001252488, intron 2 of 7)	L1MA4A|LINE|L1	9883	NM_001252487	76856	Mm.159795	NM_029772	ENSMUSG00000021499	Catsper3	4921522D01Rik|CACRC	cation channel, sperm associated 3	protein-coding	6.967	16.538	5.357	11.195	5.667	7.873	7.437	6.111	6.163	14.809	6.716	4.412	6.655	7.597	8.897	8.959	4.458	9.621	6.521	2.365	5.126	7.590	4.700	8.851	13.323
9588	chr3	98185728	98188582	+	0	NA	Intergenic	RLTR17B_Mm|LTR|ERVK	26521	NM_027665	71078	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	4.076	1.417	0.393	6.144	2.121	1.301	4.784	4.613	3.076	4.163	nan	1.237	2.486	4.367	5.178	nan	3.085	6.083	2.179	1.559	1.002	3.623	2.000	1.860	6.146
8218	chr2	38780655	38783212	+	0	NA	intron (NM_010264, intron 3 of 10)	intron (NM_010264, intron 3 of 10)	2582	NM_001159548	14536	Mm.439703	NM_010264	ENSMUSG00000063972	Nr6a1	1700113M01Rik|Gcnf|NCNF|RTR	nuclear receptor subfamily 6, group A, member 1	protein-coding	8.181	3.250	2.156	5.814	3.140	1.698	7.192	8.763	3.690	nan	5.999	3.018	7.462	7.765	7.328	9.716	10.076	5.804	3.108	1.559	2.134	3.514	2.388	2.938	12.051
1850	chr10	127111290	127115592	+	0	NA	intron (NM_177614, intron 5 of 13)	L1MB4|LINE|L1	7719	NM_177614	216440	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	5.590	5.227	3.004	3.990	4.869	4.010	3.830	4.305	3.357	4.150	3.641	2.738	5.070	5.739	4.564	5.381	5.381	4.841	3.089	1.938	2.945	2.906	nan	3.203	5.454
10396	chr4	115719483	115727704	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-14480	NM_172698	230648	Mm.283565	NM_172698	ENSMUSG00000034210	Efcab14	4732418C07Rik	EF-hand calcium binding domain 14	protein-coding	7.617	2.821	1.461	5.055	8.152	5.790	6.953	6.409	5.695	7.062	3.071	1.417	6.123	9.491	6.830	7.388	5.411	7.674	2.114	3.247	2.305	3.416	2.730	2.182	7.414
1964	chr11	8433169	8434973	+	0	NA	3' UTR (NM_001083587, exon 31 of 31)	3' UTR (NM_001083587, exon 31 of 31)	230464	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	1.844	1.021	0.445	1.837	1.107	0.677	3.303	3.183	1.692	2.054	6.382	1.288	3.489	2.001	1.451	2.101	1.516	2.779	0.771	nan	0.848	1.401	0.770	0.518	1.374
3396	chr12	71334504	71336301	+	0	NA	Intergenic	Intergenic	25518	NM_001190466	59036	Mm.46662	NM_021532	ENSMUSG00000044548	Dact1	4921528D17Rik|AI115603|DAPPER|DAPPER1|FRODO|Frd1|Frodo1|MDpr1|MTNG3|THYEX3	dishevelled-binding antagonist of beta-catenin 1	protein-coding	5.915	0.880	0.431	2.767	1.605	0.338	2.647	3.250	2.187	2.191	2.001	1.490	3.339	4.398	3.837	4.966	4.951	4.674	1.407	0.569	0.471	1.303	1.439	0.705	6.399
15081	chr9	51854393	51858764	+	0	NA	intron (NR_033560, intron 1 of 3)	L1Md_F2|LINE|L1	19307	NR_033560	408028	Mm.393649	NR_033560	ENSMUSG00000074354	Arhgap20os	9230115E21Rik	Rho GTPase activating protein 20, opposite strand	ncRNA	6.933	4.005	0.724	9.913	2.576	1.478	5.504	6.453	4.611	10.813	4.329	2.601	5.571	6.865	9.081	9.743	3.978	9.845	4.835	2.035	1.868	nan	2.697	2.751	11.406
11756	chr5	130559749	130561046	+	0	NA	intron (NM_021371, intron 2 of 5)	intron (NM_021371, intron 2 of 5)	111605	NM_021371	140904	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	4.333	2.547	1.341	2.909	1.345	0.467	2.771	1.081	2.201	2.579	0.873	1.205	1.648	3.037	1.596	1.525	nan	1.629	nan	1.443	0.229	1.153	nan	0.119	2.345
13108	chr7	31595987	31599178	+	0	NA	Intergenic	MMERVK9E_I-int|LTR|ERVK	108172	NM_001198871	100043836	Mm.296883	NM_001198871	ENSMUSG00000094053	Scgb2b7	Abpbg7|Gm4684	secretoglobin, family 2B, member 7	protein-coding	4.966	6.120	3.560	1.961	2.161	1.436	3.909	6.374	1.628	2.392	2.508	2.674	4.313	2.961	3.408	3.047	4.541	2.569	3.417	4.636	4.011	2.015	8.212	7.470	4.349
4768	chr14	65520210	65522605	+	0	NA	Intergenic	RMER5|LTR|ERV1	71705	NM_001253812	74195	Mm.29719	NM_028811	ENSMUSG00000022031	Elp3	2610507P14Rik|KAT9	elongator acetyltransferase complex subunit 3	protein-coding	3.891	0.660	0.609	2.677	2.779	2.323	1.987	1.681	2.710	2.577	0.919	1.191	2.648	3.737	2.192	2.829	1.983	3.317	0.892	nan	0.852	0.561	0.852	0.807	3.119
13859	chr7	146036484	146041141	+	0	NA	Intergenic	Intergenic	723977	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	6.944	7.978	3.040	8.932	6.959	4.423	6.370	11.194	4.815	9.356	4.589	3.275	7.212	8.095	7.884	8.513	5.077	8.500	4.225	3.507	3.136	5.125	nan	4.591	10.551
1004	chr1	187027513	187029663	+	0	NA	Intergenic	(CAGAGA)n|Simple_repeat|Simple_repeat	61172	NM_033077	110957	Mm.108054	NM_033077	ENSMUSG00000039224	D1Pas1	Pl10	DNA segment, Chr 1, Pasteur Institute 1	protein-coding	12.170	5.669	3.448	6.631	7.806	2.811	6.611	8.420	4.588	6.315	4.902	2.820	6.673	10.630	6.543	10.100	10.386	5.768	5.962	4.688	3.233	4.981	6.678	4.168	8.688
8898	chr2	157947093	157949228	+	0	NA	Intergenic	Intergenic	33507	NM_198627	277432	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding	6.660	2.346	0.732	8.385	5.081	3.309	5.194	8.545	3.728	5.495	1.906	2.237	5.713	6.688	7.020	8.114	3.276	7.568	4.300	1.943	2.035	6.274	3.601	3.610	11.673
6574	chr17	34819357	34822720	+	0	NA	intron (NM_011413, intron 7 of 40)	B4|SINE|B4	2416	NM_011413	625018	Mm.439678	NM_011413		C4a	Slp|SlpA	complement component 4A (Rodgers blood group)	protein-coding	nan	1.803	0.799	5.015	5.979	2.738	7.548	6.409	2.517	3.719	1.167	1.158	4.902	11.794	8.398	10.433	5.362	5.930	0.739	0.563	0.630	1.039	0.426	0.142	8.842
1013	chr1	191166448	191168577	+	0	NA	Intergenic	RSINE1|SINE|B4	-2695	NM_001109759	619288	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	1.485	0.652	0.442	4.307	2.257	2.300	4.298	1.598	1.749	3.580	0.905	1.064	2.783	5.367	5.380	7.072	4.966	3.245	7.142	2.985	4.507	4.772	6.743	10.105	4.440
11565	chr5	112664717	112668183	+	0	NA	Intergenic	(TCTA)n|Simple_repeat|Simple_repeat	-76454	NR_045397	67325	Mm.490791	NR_045396	ENSMUSG00000097962	1700034G24Rik	-	RIKEN cDNA 1700034G24 gene	ncRNA	0.318	0.694	0.303	0.327	0.187	0.071	nan	0.123	0.230	0.302	0.339	0.147	0.128	0.296	0.252	0.472	0.178	0.430	7.174	4.805	3.578	6.718	7.402	7.073	0.528
8853	chr2	155142251	155147082	+	0	NA	intron (NM_008395, intron 2 of 24)	RSINE1|SINE|B4	11185	NM_008395	16396	Mm.208286	NM_008395	ENSMUSG00000027598	Itch	6720481N21Rik|8030492O04Rik|A130065M08|AIP4|C230047C07Rik	itchy, E3 ubiquitin protein ligase	protein-coding	3.571	1.093	0.754	2.829	2.783	1.684	1.484	3.643	nan	nan	1.040	0.845	6.190	5.322	2.909	5.296	4.463	nan	nan	3.404	2.740	3.030	2.836	1.948	3.851
12624	chr6	115665403	115669662	+	0	NA	intron (NM_029780, intron 1 of 16)	intron (NM_029780, intron 1 of 16)	9103	NM_029780	110157	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	5.268	2.819	1.381	4.299	6.472	3.407	10.879	11.412	3.421	4.928	1.864	2.287	8.246	11.028	8.663	9.902	9.458	5.800	2.944	2.029	2.239	2.283	nan	2.634	7.338
14050	chr8	13664133	13666665	+	0	NA	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	12188	NM_009025	19414	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	6.717	3.247	0.968	3.923	1.351	0.396	2.952	5.478	2.232	2.761	6.314	1.642	4.875	6.080	4.726	6.744	3.207	4.837	0.789	0.561	0.584	1.175	0.221	0.111	7.709
5688	chr15	101018105	101023934	+	0	NA	intron (NM_001077499, intron 20 of 26)	intron (NM_001077499, intron 20 of 26)	33380	NM_001214911	668225	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	5.653	8.291	2.802	5.131	3.994	1.650	5.609	8.390	4.206	4.703	2.210	2.285	5.816	4.961	6.663	5.999	4.457	6.234	1.126	1.117	0.541	1.170	0.533	0.231	7.246
13296	chr7	75228593	75231797	+	0	NA	intron (NM_153579, intron 1 of 12)	Lx5|LINE|L1	78191	NM_001109753	64176	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	4.203	1.003	0.507	2.400	0.994	0.491	5.170	5.059	2.065	2.007	2.755	1.940	6.409	4.916	4.359	nan	4.836	2.958	2.821	1.498	0.800	3.761	2.497	1.622	4.403
1693	chr10	102796660	102797932	+	0	NA	Intergenic	Intergenic	231481	NM_172553	216285	Mm.19287	NM_172553	ENSMUSG00000036602	Alx1	AI314867|C130005I02|Cart1	ALX homeobox 1	protein-coding	6.797	0.257	0.306	3.935	1.551	1.120	0.935	5.194	3.222	2.942	nan	0.322	4.869	3.356	2.519	4.080	4.732	8.309	nan	0.601	0.136	nan	0.497	0.451	4.506
316	chr1	75055895	75058535	+	0	NA	Intergenic	Intergenic	-10576	NM_029342	75570	Mm.442409	NM_029342	ENSMUSG00000026162	Nhej1	1700029B21Rik|XLF|cernunnos	nonhomologous end-joining factor 1	protein-coding	0.667	0.695	0.658	0.568	0.687	0.464	0.687	0.988	0.938	0.504	0.202	0.512	0.417	0.357	0.450	nan	1.049	nan	1.335	nan	1.015	0.875	nan	5.645	nan
4549	chr14	26334278	26348596	+	0	NA	Intergenic	RLTR9E|LTR|ERVK	-16110	NR_038005	71106	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	6.001	6.401	2.155	7.012	5.227	2.776	2.311	4.835	3.915	4.546	2.902	1.706	2.757	5.565	3.928	4.416	nan	nan	2.295	1.489	1.342	nan	1.615	1.170	6.450
1806	chr10	120905576	120906695	+	0	NA	Intergenic	RMER15-int|LTR|ERVL	-7164	NM_177092	320183	Mm.169755	NM_177092	ENSMUSG00000051236	Msrb3	D430026P16Rik|I-8-23|MsrB2	methionine sulfoxide reductase B3	protein-coding	3.364	3.710	2.203	2.955	3.543	2.429	2.467	2.288	2.896	1.796	2.435	3.643	2.435	3.363	2.395	2.920	3.505	3.350	2.171	1.767	1.504	1.737	2.213	1.269	2.309
4013	chr13	41063918	41069871	+	0	NA	intron (NM_001145802, intron 2 of 11)	(TG)n|Simple_repeat|Simple_repeat	3571	NM_008547	17152	Mm.8149	NM_008547	ENSMUSG00000021363	Mak	A930010O05Rik	male germ cell-associated kinase	protein-coding	4.101	nan	0.741	1.792	2.763	1.576	nan	3.920	nan	nan	2.576	1.124	1.926	4.144	2.838	2.491	1.447	2.153	0.572	0.593	0.538	0.619	0.482	0.415	2.280
11941	chr5	145668232	145669547	+	0	NA	Intergenic	L1Md_F2|LINE|L1	51247	NM_017396	53973	Mm.379071	NM_017396	ENSMUSG00000075551	Cyp3a41a	Cyp3a41	cytochrome P450, family 3, subfamily a, polypeptide 41A	protein-coding	1.612	0.932	0.528	2.007	1.230	0.571	2.359	2.080	2.730	2.268	1.222	0.837	2.631	3.397	4.762	3.598	1.849	3.908	0.548	0.325	0.594	0.910	0.397	0.375	2.598
9392	chr3	83795342	83802459	+	0	NA	Intergenic	Intergenic	32579	NM_009144	20319	Mm.19155	NM_009144	ENSMUSG00000027996	Sfrp2	AI851596|Sdf5	secreted frizzled-related protein 2	protein-coding	2.516	9.319	4.306	2.370	1.749	0.825	2.852	2.956	2.350	2.037	1.950	1.403	3.139	4.070	2.892	3.174	2.553	3.233	nan	1.612	0.784	4.794	1.156	0.479	3.617
15817	chrX	137023666	137027695	+	0	NA	intron (NM_001082412, intron 4 of 6)	intron (NM_001082412, intron 4 of 6)	12622	NM_001082412	67062	Mm.276518	NM_001082412	ENSMUSG00000044348	Slc25a53	2310046F18Rik|2810402A17Rik|AI448995|AI841128|Mcart6	solute carrier family 25, member 53	protein-coding	2.268	0.545	0.358	1.091	1.001	0.716	1.007	2.580	1.745	1.676	0.521	0.330	2.597	2.230	2.283	3.610	2.595	2.344	0.809	0.451	0.387	0.701	0.275	0.363	2.038
7369	chr18	70082691	70085828	+	0	NA	intron (NM_001082553, intron 2 of 6)	intron (NM_001082553, intron 2 of 6)	-30671	NM_001302799	80718	Mm.246753	NM_030554	ENSMUSG00000024511	Rab27b	2310021G14Rik|B130064M09Rik	RAB27B, member RAS oncogene family	protein-coding	7.138	0.575	0.394	4.824	4.617	2.400	5.692	7.940	4.460	4.021	4.582	2.685	7.728	6.468	6.006	6.460	5.412	7.585	3.932	1.320	0.643	2.498	2.899	2.257	7.466
6765	chr17	57243929	57253356	+	0	NA	promoter-TSS (NM_001242389)	promoter-TSS (NM_001242389)	-809	NM_001242391	106628	Mm.37368	NM_134125	ENSMUSG00000019487	Trip10	AI646975|Cip4	thyroid hormone receptor interactor 10	protein-coding	7.545	nan	3.588	3.654	7.934	5.008	5.799	4.331	3.095	4.494	2.082	1.571	4.836	8.657	5.328	6.169	5.387	5.757	1.702	1.958	1.376	1.495	2.465	1.930	10.672
1370	chr10	66688567	66689887	+	0	NA	Intergenic	MMERVK10C-int|LTR|ERVK	231157	NR_138560	68488	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	4.003	2.391	1.874	4.224	1.945	1.037	1.132	2.638	2.889	2.480	1.363	1.206	2.766	3.464	3.615	4.724	2.920	4.112	0.811	0.654	0.718	1.393	0.550	0.301	4.345
4251	chr13	75225334	75229739	+	0	NA	Intergenic	Intergenic	137549	NM_013628	18548	Mm.1333	NM_013628	ENSMUSG00000021587	Pcsk1	Nec-1|Nec1|PC1|PC3|Phpp-1|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding	0.396	0.715	0.296	0.335	0.180	0.114	0.296	0.284	0.278	0.430	0.239	0.229	0.198	0.210	0.430	nan	0.294	0.352	11.687	7.258	3.791	11.023	12.598	7.549	0.439
14174	chr8	40107184	40110384	+	0	NA	intron (NR_035426, intron 1 of 5)	Lx8|LINE|L1	119003	NR_035426	100316806		NR_035426	ENSMUSG00000080653	Mir669e	Mirn669e|mmu-mir-669e	microRNA 669e	ncRNA	4.910	0.868	0.735	2.899	2.946	1.491	5.373	3.402	2.487	2.789	0.881	1.044	7.689	7.479	5.082	5.153	6.737	4.354	0.843	0.482	0.323	0.402	0.477	0.301	nan
4809	chr14	69876721	69906958	+	0	NA	intron (NM_028560, intron 3 of 6)	intron (NM_028560, intron 3 of 6)	51432	NM_028526	73523	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	3.720	3.428	1.603	2.826	2.027	1.069	4.284	8.629	2.488	3.597	2.512	2.298	4.308	6.246	5.113	5.647	2.583	4.100	1.157	nan	0.594	1.297	0.836	0.625	5.611
7256	chr18	56555328	56561204	+	0	NA	intron (NM_138600, intron 3 of 17)	ERVB7_2-LTR_MM|LTR|ERVK	4032	NM_138600	110695	Mm.30250	NM_138600	ENSMUSG00000053644	Aldh7a1	Atq1|D18Wsu181e	aldehyde dehydrogenase family 7, member A1	protein-coding	nan	nan	0.391	nan	0.622	0.277	2.268	nan	1.319	1.086	1.243	0.604	nan	2.893	2.797	2.531	2.193	nan	nan	1.865	1.359	nan	1.483	1.142	nan
12396	chr6	86922193	86924572	+	0	NA	intron (NM_001040106, intron 1 of 20)	PB1D9|SINE|Alu	73865	NM_001040106	269774	Mm.221038	NM_177762	ENSMUSG00000057230	Aak1	5530400K14Rik|9630042K20|AU067724|AU067726|BC028270|C79663|D6Ertd245e|R75501|mKIAA1048	AP2 associated kinase 1	protein-coding	0.597	0.927	0.563	nan	0.733	1.115	0.824	1.481	0.635	0.459	6.073	0.762	0.483	0.515	0.708	1.098	0.962	nan	nan	0.515	0.515	0.929	1.109	0.962	0.794
2649	chr11	94125646	94127520	+	0	NA	TTS (NM_001199205)	TTS (NM_001199205)	82378	NM_001025429	70834	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	4.172	1.532	0.991	4.472	6.416	5.573	4.634	3.621	4.114	4.681	1.732	1.549	5.175	6.614	3.854	4.643	3.040	4.037	2.289	nan	2.063	3.697	nan	nan	4.037
3668	chr12	103672767	103678332	+	0	NA	intron (NM_001310472, intron 2 of 5)	intron (NM_001310472, intron 2 of 5)	1213	NM_001310472	194604		NM_001310472	ENSMUSG00000071179	Serpina16	Gm46	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 16	protein-coding	6.840	4.741	2.851	3.156	4.702	3.052	2.715	nan	nan	3.390	1.208	1.370	2.198	nan	3.074	4.069	3.300	3.126	1.784	2.470	1.809	1.783	1.648	1.346	4.136
12376	chr6	85853953	85855996	+	0	NA	Intergenic	Intergenic	14163	NM_053096	93673	Mm.24251	NM_053096	ENSMUSG00000033634	Nat8f2	Cml2	N-acetyltransferase 8 (GCN5-related) family member 2	protein-coding	2.379	2.002	0.699	nan	0.328	0.448	3.041	4.919	1.430	1.597	0.984	1.036	3.902	4.079	4.608	6.044	2.842	nan	nan	0.455	0.354	1.620	1.421	0.892	4.285
9733	chr3	117555456	117560157	+	0	NA	Intergenic	Intergenic	-17421	NM_029425	75769	Mm.72187	NM_029425	ENSMUSG00000033342	Plppr5	4833424O15Rik|Lppr5|PRG-5|Pap2d	phospholipid phosphatase related 5	protein-coding	4.391	0.288	0.335	2.171	2.644	1.181	6.277	2.424	3.652	3.745	0.638	1.216	8.075	5.274	4.759	3.909	4.791	4.440	0.601	0.723	0.550	0.655	nan	0.424	2.869
3804	chr12	120624479	120629963	+	0	NA	Intergenic	Intergenic	681259	NM_001160385	217951	Mm.387395	NM_001160385	ENSMUSG00000048004	Tmem196	Gm528	transmembrane protein 196	protein-coding	8.800	0.859	0.355	2.323	3.759	1.464	6.041	3.589	4.398	3.954	6.202	3.481	6.200	6.465	5.785	5.600	5.764	4.747	1.995	2.514	1.118	2.889	1.311	0.746	4.855
9829	chr3	136498632	136500787	+	0	NA	Intergenic	Intergenic	-50360	NR_040592	70055	Mm.261063	NR_040592	ENSMUSG00000099508	1700030L20Rik	-	RIKEN cDNA 1700030L20 gene	ncRNA	6.275	nan	0.557	3.053	3.468	2.140	8.583	6.081	3.797	4.099	6.318	3.197	6.292	6.756	6.437	6.594	7.882	5.615	1.294	1.957	1.162	1.330	1.064	0.703	6.935
15221	chr9	65970836	65975382	+	0	NA	intron (NM_173185, intron 3 of 13)	ID_B1|SINE|B4	64099	NM_173185	214897	Mm.325816	NM_173185	ENSMUSG00000032384	Csnk1g1	9130020E21Rik	casein kinase 1, gamma 1	protein-coding	6.664	8.340	3.471	6.140	2.143	0.949	3.609	4.138	4.611	4.798	2.871	1.841	5.281	5.771	6.119	6.579	3.423	6.777	3.838	1.555	1.514	4.280	1.711	1.479	8.900
5483	chr15	81841761	81848065	+	0	NA	Intergenic	Intergenic	13413	NM_020507	57259	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	6.446	nan	1.406	5.235	3.341	2.452	5.967	9.405	3.143	4.632	nan	1.998	7.111	6.631	5.194	5.049	4.667	4.939	2.392	1.768	1.492	nan	3.092	2.768	6.170
3259	chr12	31743515	31746527	+	0	NA	intron (NM_001163126, intron 6 of 22)	RMER1A|Other|Other	-31095	NM_175191	73010	Mm.441517	NM_175191	ENSMUSG00000044067	Gpr22	2900068K05Rik|AW061316	G protein-coupled receptor 22	protein-coding	3.309	1.710	2.085	0.620	2.237	1.157	2.750	3.384	1.405	1.425	4.370	4.713	2.149	1.774	1.808	1.751	2.224	2.344	1.076	1.122	0.766	0.744	1.215	1.086	1.579
3443	chr12	76770883	76773253	+	0	NA	intron (NM_206534, intron 1 of 3)	intron (NM_206534, intron 1 of 3)	6495	NM_206534	211151	Mm.80970	NM_206534	ENSMUSG00000090258	Churc1	1700030P15Rik|My015|chch	churchill domain containing 1	protein-coding	4.515	5.150	1.542	3.326	1.275	0.406	2.520	2.951	2.123	2.710	6.242	2.194	3.798	nan	4.379	5.483	2.801	4.193	2.500	0.726	0.399	2.975	0.696	0.363	4.769
2437	chr11	72957043	72960157	+	0	NA	Intergenic	Intergenic	-2569	NM_016745	53313	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	2.237	0.561	0.278	2.890	3.664	2.852	2.477	2.422	3.549	4.397	0.630	0.510	2.565	5.325	2.809	4.676	3.392	3.737	0.309	0.899	0.827	0.887	nan	0.528	nan
3573	chr12	86712634	86724138	+	0	NA	intron (NM_144524, intron 5 of 9)	intron (NM_144524, intron 5 of 9)	-7921	NR_136890	102635405		NR_136890		Gm32755	-	predicted gene, 32755	ncRNA	7.996	2.950	1.730	5.389	7.242	6.019	4.442	5.632	5.069	5.999	3.047	3.154	5.837	7.729	5.250	6.482	7.261	5.830	1.907	1.961	2.258	1.723	2.165	1.965	nan
10731	chr4	136384271	136387866	+	0	NA	Intergenic	Intergenic	-37456	NM_001285482	15552	Mm.40573	NM_008309	ENSMUSG00000070687	Htr1d	5-HT-1D|5-HT1D|AI853647|Gpcr14|Htr1db	5-hydroxytryptamine (serotonin) receptor 1D	protein-coding	nan	0.471	0.166	0.444	0.314	0.138	1.121	2.008	nan	1.885	0.816	1.693	0.681	0.835	0.753	0.950	0.418	nan	5.586	2.282	1.664	6.224	6.379	4.156	1.962
15810	chrX	133274842	133277407	+	0	NA	Intergenic	Intergenic	412869	NM_001105245	279653	Mm.39738	NM_001105245	ENSMUSG00000051323	Pcdh19	B530002L05Rik|Gm717|mKIAA1313	protocadherin 19	protein-coding	8.510	5.435	3.277	4.944	5.875	2.875	6.351	4.915	4.506	6.331	5.398	2.435	5.100	8.656	5.071	5.340	6.197	5.058	5.470	4.355	2.984	3.353	4.898	4.357	6.483
14641	chr8	119695305	119697493	+	0	NA	Intergenic	RLTR14|LTR|ERV1	-3610	NM_026922	69047	Mm.46251	NM_026922	ENSMUSG00000034112	Atp2c2	1810010G06Rik|Spca2|mKIAA0703	ATPase, Ca++ transporting, type 2C, member 2	protein-coding	2.679	0.805	0.693	2.435	2.975	1.703	2.414	2.335	2.422	2.544	1.130	1.284	3.003	4.111	3.291	3.220	2.126	3.206	1.156	1.514	1.348	1.682	1.414	1.029	2.686
3131	chr11	120968222	120970980	+	0	NA	intron (NM_027874, intron 6 of 9)	intron (NM_027874, intron 6 of 9)	20534	NM_001038654	80879	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	1.630	nan	0.187	0.651	0.364	0.178	nan	nan	0.309	nan	0.509	0.188	3.012	2.422	0.842	0.967	0.609	nan	0.378	nan	0.288	0.615	0.124	0.172	4.595
13081	chr7	30199776	30213216	+	0	NA	Intergenic	MMERVK9E_I-int|LTR|ERVK	-11448	NM_009795	12336	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|D7Ertd146e	calpain, small subunit 1	protein-coding	5.135	0.728	0.532	5.392	2.845	1.637	6.335	7.376	5.692	7.926	2.753	1.717	6.288	6.911	7.319	8.356	5.053	8.094	3.569	2.858	2.071	5.683	3.067	2.464	8.084
6899	chr17	83795131	83796930	+	0	NA	intron (NM_054082, intron 14 of 16)	intron (NM_054082, intron 14 of 16)	50760	NM_025325	107766	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	3.730	6.729	5.522	1.959	2.407	1.015	2.529	2.211	nan	2.792	1.460	1.886	2.129	2.090	2.137	2.537	3.573	2.189	1.212	2.673	1.174	0.485	1.308	0.824	2.118
9758	chr3	121656222	121659125	+	0	NA	Intergenic	Intergenic	-11220	NR_036458	100503044	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	9.147	1.870	0.761	8.605	5.175	3.837	9.126	4.912	6.407	9.622	1.196	1.410	9.253	11.039	7.480	9.302	8.128	10.382	1.402	0.955	1.617	1.610	nan	1.229	11.514
6263	chr16	96052413	96057522	+	0	NA	intron (NM_001103179, intron 13 of 40)	MTE2a|LTR|ERVL-MaLR	27461	NM_001103179	93871	Mm.240871	NM_145125	ENSMUSG00000022914	Brwd1	5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5	bromodomain and WD repeat domain containing 1	protein-coding	4.416	1.634	0.989	5.212	2.729	1.681	2.417	3.592	2.887	3.261	2.400	1.190	2.228	3.448	nan	4.070	2.644	4.057	3.045	1.948	1.381	2.943	3.502	2.222	3.542
4254	chr13	75925510	75927673	+	0	NA	intron (NM_028493, intron 3 of 11)	L1Md_F2|LINE|L1	17233	NM_028493	73296	Mm.276200	NM_028493	ENSMUSG00000021589	Rhobtb3	1700040C17Rik|2610033K01Rik|4930503C18Rik|AI317148|AW208826|mKIAA0878	Rho-related BTB domain containing 3	protein-coding	5.276	2.121	1.085	2.515	3.015	1.393	3.247	1.833	2.588	2.262	2.017	2.186	3.763	4.089	4.080	2.882	1.433	4.119	2.507	1.184	1.027	1.465	1.102	0.827	2.189
15395	chr9	96143181	96145135	+	0	NA	intron (NM_177352, intron 5 of 16)	B3A|SINE|B2	24729	NM_177352	235533	Mm.213651	NM_177352	ENSMUSG00000041440	Gk5	AV095337|C330018K18Rik|G630067D24Rik	glycerol kinase 5 (putative)	protein-coding	4.120	1.053	0.401	1.648	1.700	0.507	2.027	1.862	4.254	4.178	0.511	0.538	1.531	2.604	3.123	3.189	1.291	5.175	0.433	0.491	0.582	0.408	0.476	0.596	4.058
5437	chr15	79780642	79782237	+	0	NA	Intergenic	ORR1F|LTR|ERVL-MaLR	-6972	NM_017470	54152	Mm.288159	NM_017470	ENSMUSG00000022420	Dnal4	D15Ertd424e|Dnalc4	dynein, axonemal, light chain 4	protein-coding	4.973	3.785	1.567	5.255	2.422	0.980	4.956	4.488	4.269	4.271	2.934	1.699	4.353	4.575	4.071	4.650	3.671	5.638	1.721	1.591	1.299	2.736	2.080	1.952	6.968
7188	chr18	38907992	38915547	+	0	NA	intron (NM_001033789, intron 3 of 4)	URR1A|DNA|hAT-Charlie	6930	NM_010197	14164	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	4.931	0.637	0.349	2.745	3.302	1.565	3.888	5.395	4.431	4.746	1.459	0.828	5.055	5.774	4.125	nan	3.954	4.588	0.706	0.394	0.292	0.632	0.335	0.253	4.729
15352	chr9	82728235	82742362	+	0	NA	Intergenic	Intergenic	-94508	NM_001168240	65099	Mm.41415	NM_022986	ENSMUSG00000032251	Irak1bp1	4921528N06Rik|AI851240|Aabp3|Aip70|Simpl	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding	0.459	9.974	5.701	0.404	0.135	0.087	0.272	0.339	0.498	0.491	0.267	0.246	0.262	0.356	0.413	0.597	0.421	0.615	0.623	nan	0.141	0.424	0.362	0.253	nan
15314	chr9	75386724	75397555	+	0	NA	intron (NM_027418, intron 4 of 5)	RSINE1|SINE|B4	17220	NM_027418	50772	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	7.104	2.464	1.626	6.590	6.460	4.613	6.158	7.794	7.236	6.542	4.443	3.123	8.623	11.096	6.955	6.825	6.320	7.599	1.257	nan	1.701	0.869	1.315	1.102	nan
2485	chr11	76635646	76641430	+	0	NA	Intergenic	(TTTC)n|Simple_repeat|Simple_repeat	-33932	NM_177182	320522	Mm.131585	NM_177182	ENSMUSG00000044243	Bhlha9	A830053O21Rik|Fingerin	basic helix-loop-helix family, member a9	protein-coding	2.201	0.980	0.722	1.162	1.109	0.740	nan	3.783	2.899	1.601	5.451	5.629	1.466	nan	nan	nan	1.627	1.978	2.761	1.771	nan	2.199	2.578	2.609	0.617
10365	chr4	108291531	108293818	+	0	NA	intron (NM_001033634, intron 1 of 13)	B1F1|SINE|Alu	8416	NM_001033634	414872	Mm.426241	NM_001033634	ENSMUSG00000034636	Zyg11b	1110046I03Rik|2810482G21Rik|D4Mgi23|Gm431|mKIAA1730	zyg-ll family member B, cell cycle regulator	protein-coding	5.996	10.730	2.843	7.277	3.839	2.952	5.793	nan	5.222	6.474	5.500	3.067	5.054	6.887	7.171	9.816	3.757	7.982	6.521	4.486	4.934	9.319	3.651	4.000	10.834
13362	chr7	87214405	87215756	+	0	NA	Intergenic	Intergenic	-31569	NM_001285835	50490	Mm.31748	NM_015760	ENSMUSG00000030562	Nox4	AI648021	NADPH oxidase 4	protein-coding	5.290	7.823	3.881	4.922	3.214	2.123	4.014	3.776	3.050	4.372	3.627	1.576	3.132	5.299	3.887	3.949	3.102	5.504	6.566	4.536	4.253	5.204	7.717	6.289	6.810
795	chr1	162200883	162205812	+	0	NA	intron (NM_001038619, intron 14 of 20)	intron (NM_001038619, intron 14 of 20)	-14276	NR_002870	474332	Mm.479755	NR_002870	ENSMUSG00000078190	Dnm3os	6030416H16Rik|Hag2|Npn1|P/L01	dynamin 3, opposite strand	ncRNA	5.165	0.901	0.570	2.191	2.793	1.729	2.895	2.976	3.646	2.501	2.924	1.582	2.853	3.324	3.265	6.604	4.442	5.313	nan	0.860	0.562	1.086	nan	0.659	3.731
15838	chrX	147247706	147248669	+	0	NA	Intergenic	ORR1D2|LTR|ERVL-MaLR	89977	NR_029956	723914		NR_029956	ENSMUSG00000065450	Mir448	Mirn448|mir-448|mmu-mir-448	microRNA 448	ncRNA	3.255	0.845	1.238	1.540	2.237	0.887	4.502	2.857	0.742	2.257	1.295	1.030	1.540	2.864	1.942	3.066	2.447	1.724	1.734	3.319	1.286	0.883	5.211	3.424	2.962
8794	chr2	150591274	150598901	+	0	NA	intron (NM_027977, intron 2 of 8)	intron (NM_027977, intron 2 of 8)	13436	NM_027977	71881	Mm.26599	NM_027977	ENSMUSG00000033096	Apmap	2310001A20Rik|AI314817	adipocyte plasma membrane associated protein	protein-coding	5.298	1.057	0.415	3.277	1.684	1.116	7.301	8.276	4.238	3.733	3.148	2.676	7.987	7.472	6.321	11.198	7.268	7.036	nan	0.822	0.611	1.479	1.033	0.879	11.121
4853	chr14	75572017	75592942	+	0	NA	TTS (NM_001164141)	TTS (NM_001164141)	9506	NM_026457	67926	Mm.23361	NM_026457	ENSMUSG00000034913	Spert	1700086N05Rik|AI596460|Nurit	spermatid associated	protein-coding	6.984	10.303	5.350	4.513	4.222	2.226	4.616	6.484	4.177	4.645	2.777	1.503	4.649	6.131	5.054	5.758	3.911	5.771	0.805	1.873	1.165	0.582	0.618	0.415	5.507
944	chr1	182346595	182348065	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-5724	NM_175127	67948	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	3.665	6.030	2.942	2.907	2.284	0.667	1.695	0.862	1.703	2.138	1.371	0.483	1.372	3.511	3.197	2.642	1.386	2.097	0.698	0.984	0.305	0.675	0.299	0.153	3.232
7955	chr2	6791229	6793074	+	0	NA	intron (NM_001110229, intron 2 of 14)	intron (NM_001110229, intron 2 of 14)	-70489	NM_001310447	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	3.208	1.374	0.947	2.912	2.284	1.273	1.312	1.721	1.055	1.858	1.147	0.446	1.087	1.798	1.905	2.534	1.590	2.820	4.966	4.705	1.844	4.170	4.764	3.866	1.933
5304	chr15	73360561	73373797	+	0	NA	intron (NM_001130409, intron 2 of 29)	RLTR18-int|LTR|ERVK	56012	NM_007982	14083	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FAK|FRNK|Fadk|mKIAA4203|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	8.989	nan	0.760	4.733	3.368	2.180	nan	9.053	4.964	5.956	nan	1.268	12.466	8.833	7.994	8.174	7.237	8.862	0.803	0.619	0.574	nan	0.653	0.527	10.636
1113	chr10	17557955	17559870	+	0	NA	Intergenic	Intergenic	-164316	NM_010828	17684	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	6.599	0.872	0.728	1.593	1.137	0.418	3.643	2.199	nan	1.362	2.027	1.979	4.698	5.809	1.829	1.600	2.979	2.567	0.936	1.024	0.238	0.806	0.625	0.539	3.603
3405	chr12	71812692	71815445	+	0	NA	Intergenic	Intergenic	-17000	NM_026102	208846	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	4.974	7.880	4.919	4.508	4.565	2.564	4.943	3.055	3.731	3.718	7.020	4.142	4.579	4.715	3.963	4.414	3.850	5.556	0.801	2.018	1.566	1.053	1.511	1.214	4.612
15399	chr9	96527624	96533946	+	0	NA	Intergenic	Intergenic	-52110	NM_001311135	19823	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	3.992	4.647	1.927	3.156	2.135	2.137	4.386	5.829	2.688	5.072	4.725	2.780	4.020	4.128	3.861	4.267	2.738	3.675	2.781	1.353	1.625	2.287	2.118	3.041	5.118
4470	chr14	11993544	11995084	+	0	NA	intron (NM_008981, intron 4 of 29)	B2_Mm1t|SINE|B2	-195629	NM_001347593	19270	Mm.431266	NM_008981	ENSMUSG00000021745	Ptprg	5430405N12Rik|AW046354|AW549872|RPTPgamma	protein tyrosine phosphatase, receptor type, G	protein-coding	3.387	5.897	3.019	5.196	1.604	0.740	2.400	3.731	3.258	4.399	1.636	2.090	3.388	4.657	6.366	7.590	2.028	6.054	5.702	2.433	0.781	5.752	2.804	1.931	4.855
957	chr1	182880862	182884279	+	0	NA	intron (NM_144796, intron 4 of 7)	intron (NM_144796, intron 4 of 7)	-72218	NM_016928	53791	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	4.378	1.014	0.640	2.012	1.598	0.882	5.994	6.114	3.225	3.190	4.926	3.606	6.686	7.078	5.579	5.980	5.374	3.420	5.888	3.700	2.786	7.038	5.339	3.630	2.299
13502	chr7	107685149	107686918	+	0	NA	intron (NM_001163557, intron 5 of 25)	intron (NM_001163557, intron 5 of 25)	71999	NM_001205227	320635	Mm.132828	NM_177216	ENSMUSG00000048065	Cyb5r2	D630003K02Rik|b5R.2	cytochrome b5 reductase 2	protein-coding	7.013	5.787	2.855	7.336	5.030	3.571	10.053	9.061	4.886	5.653	3.592	2.053	9.184	7.504	8.695	nan	6.081	nan	nan	2.369	1.128	3.308	2.595	1.767	7.211
11476	chr5	99663926	99683347	+	0	NA	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	55424	NR_030692	319818	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	6.902	1.344	0.669	4.919	4.818	2.628	8.808	5.344	7.641	8.514	1.675	2.734	7.891	9.557	8.048	7.736	4.947	10.760	0.891	0.898	0.650	1.059	0.981	0.648	6.361
9560	chr3	96303591	96307092	+	0	NA	Intergenic	Intergenic	-11372	NM_010186	14129	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	5.117	11.636	3.930	5.678	3.048	1.300	2.597	3.021	5.060	4.724	nan	2.994	5.089	5.487	6.435	5.606	3.820	5.227	2.922	1.661	0.842	4.177	1.989	1.609	7.737
3996	chr13	38084009	38086528	+	0	NA	Intergenic	Intergenic	48279	NM_024242	71340	Mm.297130	NM_024242	ENSMUSG00000021428	Riok1	3110046C13Rik|5430416A05Rik|Ad034	RIO kinase 1 (yeast)	protein-coding	5.367	8.473	3.637	5.552	3.497	1.732	nan	nan	nan	6.193	2.822	2.397	3.611	5.952	4.955	nan	4.053	4.349	4.010	2.925	2.802	4.761	3.004	3.917	7.957
12290	chr6	66965487	66967063	+	0	NA	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	69384	NM_001177558	14701	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	7.775	4.220	1.976	5.644	4.125	2.875	10.149	8.739	5.904	5.113	4.814	2.064	12.173	11.393	12.487	14.767	8.382	9.721	1.856	0.744	1.587	3.053	1.398	0.301	11.393
5185	chr15	57536124	57537890	+	0	NA	Intergenic	Intergenic	-59382	NM_172378	210463	Mm.26555	NM_172378	ENSMUSG00000022366	Slc22a22	oat-pg	solute carrier family 22 (organic cation transporter), member 22	protein-coding	2.814	2.924	1.106	3.099	2.828	1.237	2.946	4.010	2.301	2.222	1.396	0.971	3.496	4.990	3.775	3.618	3.482	2.513	0.814	1.151	1.180	2.020	0.771	0.350	4.165
12234	chr6	51659900	51661985	+	0	NA	Intergenic	Intergenic	116419	NM_001127348	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	2.868	0.970	0.227	2.389	0.965	0.303	5.321	4.260	2.866	4.163	4.231	0.974	7.399	5.147	5.918	7.716	4.812	3.739	nan	0.212	0.060	0.352	0.487	0.155	9.056
4543	chr14	25886868	25890676	+	0	NA	intron (NM_207229, intron 3 of 3)	intron (NM_207229, intron 3 of 3)	14121	NM_207229	211623	Mm.439926	NM_207229	ENSMUSG00000095304	Plac9a	Plac9	placenta specific 9a	protein-coding	1.185	0.600	0.444	0.511	0.300	0.228	1.163	2.104	1.236	1.405	0.648	0.849	1.234	1.386	1.540	nan	nan	nan	3.882	2.256	1.849	nan	2.598	2.464	1.889
13473	chr7	106172885	106173983	+	0	NA	intron (NM_001039160, intron 1 of 1).2	L1Md_F3|LINE|L1	16665	NR_040453	100417829	Mm.490377	NR_040453	ENSMUSG00000099241	Gm17757	-	GTPase, very large interferon inducible 1 pseudogene	pseudo	4.020	1.791	0.919	2.935	6.355	4.465	1.323	2.506	1.961	1.554	7.611	1.360	1.773	4.240	1.448	1.505	0.929	1.888	nan	0.959	0.648	0.582	0.843	0.585	3.441
10959	chr4	151541486	151542928	+	0	NA	intron (NM_001081557, intron 4 of 23)	intron (NM_001081557, intron 4 of 23)	319561	NM_001081557	100072	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	4.503	nan	1.331	2.705	2.498	1.144	1.947	2.843	3.258	4.613	1.073	0.984	3.325	3.410	1.882	2.742	3.095	2.911	4.521	3.058	4.238	4.246	5.233	5.729	3.081
10216	chr4	82138549	82164315	+	0	NA	Intergenic	Intergenic	86052	NR_040659	545641	Mm.216028	NR_040659	ENSMUSG00000085022	Gm5860	EG545641	predicted gene 5860	ncRNA	5.045	1.429	0.629	5.298	3.284	1.930	4.911	4.097	4.388	5.939	5.042	3.154	4.310	5.964	4.564	5.124	4.084	5.380	11.728	13.009	8.952	23.867	4.741	4.162	6.150
5242	chr15	61339372	61340883	+	0	NA	Intergenic	Intergenic	-418857	NM_001081067	117586	Mm.291499	NM_001081067	ENSMUSG00000022347	A1bg	C44	alpha-1-B glycoprotein	protein-coding	0.458	0.459	0.161	nan	0.304	0.033	nan	1.070	nan	nan	4.297	2.028	0.470	0.341	0.830	nan	0.901	1.236	1.928	0.701	0.636	2.558	0.940	0.569	0.689
13121	chr7	31934302	31938111	+	0	NA	Intergenic	RLTR6-int|LTR|ERV1	223541	NM_001270542	626305	Mm.454021	NM_001270542	ENSMUSG00000078759	Scgb1b7	ABPA7_A29|Abpa29|Abpa7|EG626305|Gm6662	secretoglobin, family 1B, member 7	protein-coding	8.580	14.442	6.219	9.603	5.330	3.612	5.565	6.341	5.337	7.939	6.404	2.529	4.659	7.403	6.218	7.475	4.870	7.970	4.710	4.913	3.668	5.625	4.082	3.426	9.982
8465	chr2	93615394	93617677	+	0	NA	Intergenic	Intergenic	-25899	NM_007442	11695	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	2.984	1.096	0.592	2.296	2.217	1.372	4.147	3.260	2.362	3.250	1.287	0.481	3.472	4.487	3.566	5.216	2.311	3.833	1.203	0.608	0.504	1.023	0.349	0.457	5.352
502	chr1	108837369	108840212	+	0	NA	Intergenic	Lx4A|LINE|L1	921531	NR_102307	319596	Mm.136054	NR_102306	ENSMUSG00000100457	D830032E09Rik	-	RIKEN cDNA D830032E09 gene	ncRNA	2.620	nan	0.470	1.032	0.760	0.160	1.884	2.231	1.129	1.297	0.880	0.650	2.538	1.411	2.615	5.209	4.833	1.988	2.731	2.043	1.089	2.840	2.527	1.731	1.425
314	chr1	74927605	74932968	+	0	NA	intron (NM_001039495, intron 3 of 32)	L1M5|LINE|L1	5313	NM_001039495	241116	Mm.186404	NM_172848	ENSMUSG00000047021	Ccdc108	A230051F10|B230363K08Rik|Cfap65	coiled-coil domain containing 108	protein-coding	0.515	0.502	0.236	0.436	0.246	0.277	0.302	0.337	0.206	0.460	0.196	0.132	0.168	0.219	0.232	nan	0.514	nan	nan	6.472	3.557	4.358	4.864	4.043	nan
1796	chr10	120391458	120394374	+	0	NA	TTS (NR_040626)	TTS (NR_040626)	3393	NR_040626	320626	Mm.446091	NR_040626	ENSMUSG00000090191	9230105E05Rik	-	RIKEN cDNA 9230105E05 gene	ncRNA	4.768	0.711	0.457	2.956	1.839	0.937	2.760	1.498	4.519	4.763	1.501	1.045	5.526	4.218	4.182	5.964	3.949	4.014	1.131	0.452	0.329	1.067	0.683	0.369	3.762
3385	chr12	70628501	70642939	+	0	NA	intron (NR_037248, intron 4 of 4)	B3|SINE|B2	182566	NM_028339	72736	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	7.084	4.893	2.203	4.780	4.420	2.249	8.015	5.464	5.911	6.860	4.892	3.464	9.242	9.650	9.164	10.110	6.713	8.022	3.115	2.177	1.847	3.043	2.075	1.798	10.896
11844	chr5	137815333	137817874	+	0	NA	intron (NM_001005426, intron 11 of 16)	intron (NM_001005426, intron 11 of 16)	19675	NM_153510	231805	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	2.333	0.814	0.290	1.838	1.741	1.445	4.692	4.041	2.331	3.204	3.069	2.031	2.360	4.287	3.095	3.242	2.112	2.170	0.837	0.643	0.519	2.266	nan	0.521	3.082
6248	chr16	94787178	94788395	+	0	NA	intron (NM_001025584, intron 3 of 4)	(TTCC)n|Simple_repeat|Simple_repeat	68904	NM_001025590	16522	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding	4.930	1.464	1.145	2.590	3.454	3.126	4.387	8.938	nan	2.162	4.843	1.852	4.861	4.767	4.327	5.314	4.438	3.503	nan	1.488	2.177	1.790	1.054	1.071	4.917
2998	chr11	116071652	116074334	+	0	NA	intron (NM_001009573, intron 13 of 32)	PB1D11|SINE|Alu	4968	NM_001009573	70450	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	2.463	nan	0.786	1.191	1.289	0.847	2.935	6.322	1.748	nan	2.309	4.983	2.391	2.597	2.168	2.104	1.968	nan	3.206	nan	2.520	2.190	4.042	2.791	1.095
14922	chr9	23501341	23507078	+	0	NA	Intergenic	Lx5|LINE|L1	281133	NM_028472	73230	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	2.279	0.350	0.346	1.011	1.029	0.570	3.597	0.884	3.505	3.103	0.588	0.495	3.967	2.968	4.040	nan	2.344	3.107	0.928	0.993	0.379	0.978	0.503	0.669	1.971
13151	chr7	51613049	51616483	+	0	NA	Intergenic	Intergenic	-7064	NM_080853	140919	Mm.256618	NM_080853	ENSMUSG00000030500	Slc17a6	2900073D12Rik|DNPI|VGLUT2	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6	protein-coding	4.575	2.492	1.295	3.204	2.944	1.529	1.216	3.839	2.038	4.405	0.882	0.931	3.175	9.777	3.091	3.759	2.045	3.151	2.942	2.558	2.099	2.243	3.208	2.569	6.789
5921	chr16	23374356	23376594	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-53658	NM_001004151	239766	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	3.831	2.766	1.122	3.248	2.608	0.952	2.617	4.068	3.161	3.853	1.159	0.520	6.279	7.864	5.603	5.888	3.978	5.640	0.832	0.710	0.242	0.729	nan	0.425	3.256
2058	chr11	31612808	31614833	+	0	NA	Intergenic	Intergenic	58042	NM_001024919	69556	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	2.098	3.220	1.125	4.931	2.398	1.593	6.779	1.468	1.853	3.553	0.472	1.101	4.883	7.578	1.882	3.097	nan	2.392	2.543	1.557	1.061	3.625	2.391	2.071	3.003
12706	chr6	125371722	125377779	+	0	NA	intron (NM_198604, intron 7 of 16)	intron (NM_198604, intron 7 of 16)	5754	NM_198604	213522	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	4.397	nan	1.001	3.549	4.240	3.168	6.816	8.380	4.093	4.479	7.711	6.074	6.234	6.718	6.030	nan	4.591	5.744	3.146	2.472	1.845	3.881	3.322	2.495	4.725
11457	chr5	93633571	93637053	+	0	NA	3' UTR (NM_001164284, exon 6 of 6)	3' UTR (NM_001164284, exon 6 of 6)	36151	NM_001164284	381654	Mm.326591	NM_001164284	ENSMUSG00000070686	C87414	-	expressed sequence C87414	protein-coding	8.795	10.300	4.136	8.533	4.237	3.256	8.190	7.043	6.238	9.125	5.634	5.211	6.754	9.412	8.806	8.774	6.814	8.279	4.798	3.526	3.259	4.813	4.186	5.660	9.279
9553	chr3	96010558	96011849	+	0	NA	intron (NM_013841, intron 14 of 14)	ORR1D1|LTR|ERVL-MaLR	-15364	NM_023320	67220	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	5.447	1.128	0.306	1.444	1.786	1.278	6.067	3.070	1.604	1.838	nan	0.313	6.105	5.442	4.438	4.219	6.506	3.556	1.481	1.283	1.786	0.932	1.661	1.896	3.770
5859	chr16	19658874	19665362	+	0	NA	intron (NM_177356, intron 5 of 5)	L1_Mus4|LINE|L1	-37017	NM_146958	258960	Mm.377771	NM_146958	ENSMUSG00000060480	Olfr171	MOR273-1|MOR273-5	olfactory receptor 171	protein-coding	1.771	0.347	0.562	1.040	6.190	5.031	1.448	2.097	1.562	nan	0.336	0.343	0.861	1.541	1.004	nan	2.225	2.141	0.636	0.945	1.064	0.124	0.860	1.046	0.946
5534	chr15	85621335	85623571	+	0	NA	Intergenic	Intergenic	-40632	NM_009528	22422	Mm.306946	NM_009528	ENSMUSG00000022382	Wnt7b	Wnt-7b	wingless-type MMTV integration site family, member 7B	protein-coding	7.555	0.581	0.398	2.697	1.795	1.027	4.267	11.072	3.723	5.359	0.802	0.403	9.465	7.721	7.697	7.547	10.286	5.241	nan	0.779	0.428	nan	0.359	0.245	5.209
7372	chr18	70728160	70731945	+	0	NA	Intergenic	Intergenic	161760	NM_010773	17191	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	6.206	15.703	8.338	5.533	5.414	3.678	5.020	5.743	3.927	7.713	4.837	3.020	3.654	4.953	3.989	5.318	4.784	4.634	5.409	3.973	4.443	4.127	5.209	5.442	6.757
5317	chr15	74450690	74454994	+	0	NA	intron (NR_144499, intron 2 of 3)	intron (NR_144499, intron 2 of 3)	34804	NR_144499	102634630		NR_144499		Gm32168	-	predicted gene, 32168	ncRNA	nan	nan	0.297	nan	0.155	0.104	nan	1.182	0.519	nan	nan	1.545	0.607	nan	0.423	0.445	nan	0.386	0.827	0.274	0.483	nan	0.579	0.439	0.462
6463	chr17	28043809	28047937	+	0	NA	intron (NM_001286040, intron 14 of 24)	intron (NM_001286040, intron 14 of 24)	34711	NM_013687	21463	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	8.275	7.183	2.059	7.819	3.870	2.836	7.699	6.998	4.976	7.998	4.574	3.305	5.566	7.889	7.741	10.485	7.632	6.703	4.249	2.886	2.563	4.412	3.438	3.400	11.815
5878	chr16	21238506	21240844	+	0	NA	Intergenic	Intergenic	16391	NR_106145	102465781		NR_106145	ENSMUSG00000098400	Mir7680	Gm27417|mmu-mir-7680	microRNA 7680	ncRNA	1.711	1.019	0.292	1.754	1.354	0.550	2.515	3.335	2.131	2.584	2.029	1.992	2.218	4.996	2.667	3.226	1.289	2.615	4.676	4.436	2.165	9.109	4.475	2.652	2.588
3328	chr12	55262703	55266614	+	0	NA	Intergenic	MT2B1|LTR|ERVL	34180	NM_001100110	100101806	Mm.471968	NM_001100110	ENSMUSG00000079108	Srp54c	E330029E12Rik	signal recognition particle 54C	protein-coding	8.300	nan	0.841	1.011	3.899	2.261	3.860	7.261	1.470	2.051	3.075	3.641	4.345	4.267	4.766	3.385	4.517	4.835	1.814	1.269	0.925	2.643	1.107	0.483	7.937
2005	chr11	20129926	20132746	+	0	NA	Intergenic	B1_Mm|SINE|Alu	-18385	NM_146243	66713	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	5.288	2.877	1.904	5.178	4.379	3.709	2.474	1.960	3.296	2.905	3.145	2.962	1.577	2.702	2.353	3.114	2.473	4.445	2.262	2.320	1.552	1.652	1.289	1.177	3.563
11830	chr5	137036391	137044810	+	0	NA	intron (NM_007457, intron 3 of 4)	B3A|SINE|B2	5460	NM_007457	11769	Mm.833	NM_007457	ENSMUSG00000004849	Ap1s1	AP19	adaptor protein complex AP-1, sigma 1	protein-coding	6.958	3.899	1.356	6.483	4.422	3.005	8.350	7.307	5.579	10.238	4.878	2.512	6.716	9.709	8.285	7.398	5.436	7.909	1.601	1.126	1.374	2.072	nan	1.344	9.763
13558	chr7	116742689	116747791	+	0	NA	Intergenic	L1_Mur2|LINE|L1	240871	NM_001130479	53322	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	8.031	0.865	0.488	4.684	5.641	2.762	7.506	11.596	5.369	5.876	2.370	3.037	8.643	8.901	7.504	7.394	7.505	8.033	5.949	3.812	1.841	6.296	6.556	3.737	6.126
7226	chr18	47527519	47528960	+	0	NA	Intergenic	Intergenic	-9496	NR_033454	328953	Mm.246768	NR_033454		Gm5095	A730092B10	predicted gene 5095	ncRNA	4.579	1.049	0.876	6.452	2.011	1.551	1.263	1.293	2.376	3.988	0.874	1.050	1.114	2.188	2.200	2.236	2.597	4.162	1.070	2.208	2.548	1.638	0.839	1.308	4.355
2828	chr11	102195382	102201203	+	0	NA	intron (NM_001077696, intron 20 of 26)	intron (NM_001077696, intron 20 of 26)	8593	NM_175935	68401	Mm.22385	NM_175935	ENSMUSG00000034793	G6pc3	0710001K01Rik|AU019276|AU045429|AV128920|AW545836|UGRP	glucose 6 phosphatase, catalytic, 3	protein-coding	3.734	nan	0.659	2.642	2.378	2.064	2.120	4.209	2.817	3.109	1.467	0.822	2.226	4.443	3.555	4.908	nan	3.488	1.493	nan	1.436	2.154	nan	nan	3.360
831	chr1	166432891	166435255	+	0	NA	Intergenic	Intergenic	-24245	NM_001142948	71592	Mm.192094	NM_175170	ENSMUSG00000040596	Pogk	9130401E23Rik|BASS2|mKIAA1513	pogo transposable element with KRAB domain	protein-coding	4.717	1.611	0.773	2.716	4.069	3.384	4.169	3.935	4.067	3.682	1.623	2.440	3.136	4.551	5.018	6.214	5.049	5.043	0.856	0.877	0.726	nan	nan	0.573	3.415
5879	chr16	21243973	21251115	+	0	NA	TTS (NR_046162)	TTS (NR_046162)	8522	NR_106145	102465781		NR_106145	ENSMUSG00000098400	Mir7680	Gm27417|mmu-mir-7680	microRNA 7680	ncRNA	2.032	0.834	0.507	2.786	1.179	0.569	3.614	4.428	2.482	nan	2.095	1.577	3.115	5.449	3.744	nan	2.550	4.510	3.753	3.354	2.308	6.406	5.405	4.067	3.459
5013	chr15	6352309	6357963	+	0	NA	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	-31612	NM_023118	13132	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	5.218	0.440	0.423	1.532	1.803	1.041	3.289	8.126	1.653	1.871	0.748	0.396	1.708	2.087	2.091	1.629	4.101	2.161	0.524	0.611	0.607	0.426	0.261	0.264	1.912
5507	chr15	83356787	83362627	+	0	NA	intron (NR_027980, intron 3 of 3)	intron (NR_027980, intron 3 of 3)	7590	NR_027980	69291	Mm.66794	NM_001033147		1700001L05Rik	-	RIKEN cDNA 1700001L05 gene	ncRNA	6.167	1.716	0.449	6.853	1.506	0.989	7.026	8.214	3.972	5.762	3.097	2.940	9.677	7.520	nan	8.147	6.379	nan	nan	1.275	1.128	nan	2.613	1.727	7.400
1960	chr11	7694887	7696362	+	0	NA	Intergenic	L1_Mur2|LINE|L1	-481701	NM_008343	16009	Mm.29254	NM_008343	ENSMUSG00000020427	Igfbp3	AI649005|IGFBP-3|IGgfbp3	insulin-like growth factor binding protein 3	protein-coding	nan	0.424	0.325	0.590	0.052	0.164	0.293	1.834	0.500	0.433	5.413	4.186	0.983	1.786	0.453	0.503	0.515	0.508	0.724	nan		0.386	0.208	0.064	0.246
8303	chr2	64949442	64959150	+	0	NA	intron (NM_016719, intron 2 of 13)	L1MA9|LINE|L1	68470	NM_016719	50915	Mm.214554	NM_016719	ENSMUSG00000026888	Grb14	AI505286	growth factor receptor bound protein 14	protein-coding	5.149	0.514	0.494	4.076	2.659	1.328	4.307	3.521	6.983	7.811	1.015	1.164	8.355	7.317	6.655	9.062	8.504	7.835	1.148	0.713	0.429	1.108	0.869	0.520	5.217
5762	chr16	4982292	4983560	+	0	NA	Intergenic	Intergenic	14926	NM_027669	71089	Mm.87382	NM_027669	ENSMUSG00000022542	Sept12	1700028G04Rik|4933413B09Rik|Septin12	septin 12	protein-coding	4.308	0.692	0.683	3.124	1.643	0.967	2.420	6.786	2.820	3.282	2.518	2.269	6.244	5.233	4.153	3.154	3.616	4.832	0.590	0.179	0.603	0.448	0.277	0.407	3.655
14212	chr8	47844255	47846935	+	0	NA	intron (NM_133791, intron 20 of 22)	intron (NM_133791, intron 20 of 22)	21113	NM_029383	75677	Mm.390033	NM_029383	ENSMUSG00000038064	Cldn22	2210404A22Rik|5330431C14Rik|9530051B05Rik	claudin 22	protein-coding	6.974	2.479	1.855	4.762	4.603	2.636	4.501	5.087	5.459	6.343	2.052	1.725	8.726	10.731	7.127	10.329	6.777	6.818	2.681	2.992	1.336	5.367	2.767	1.895	9.388
13742	chr7	133654391	133656506	+	0	NA	intron (NM_178115, intron 15 of 24)	B3|SINE|B2	17773	NM_178115	214764	Mm.174044	NM_145995	ENSMUSG00000039990	Edrf1	2700050L05Rik|AU022667|AW558805	erythroid differentiation regulatory factor 1	protein-coding	2.436	nan	0.275	2.742	3.910	2.917	1.616	4.698	nan	3.337	1.292	1.593	3.919	4.288	2.484	2.358	1.796	3.921	0.700	0.820	0.242	0.594	0.525	0.552	1.531
4753	chr14	64028787	64038252	+	0	NA	TTS (NM_146246)	TTS (NM_146246)	41088	NM_146246	271209	Mm.300655	NM_146246	ENSMUSG00000046049	Rp1l1	BC031365|BE983540|Dcdc4|Rp1hl1	retinitis pigmentosa 1 homolog like 1	protein-coding	0.802	11.187	4.329	1.285	0.506	0.310	0.718	0.526	0.797	0.863	0.898	0.473	0.341	0.632	0.804	0.881	0.422	0.898	0.649	nan	0.479	0.505	0.376	0.192	1.142
1206	chr10	33915526	33918903	+	0	NA	Intergenic	MLTR11A|LTR|ERVK	12103	NM_001162957	212892	Mm.131949	NM_001162957	ENSMUSG00000039552	Rsph4a	A230081C05|Rshl3	radial spoke head 4 homolog A (Chlamydomonas)	protein-coding	6.006	2.633	0.858	1.848	1.033	0.494	3.979	3.953	2.057	1.265	8.337	2.820	3.357	3.615	3.291	4.565	3.997	3.411	0.596	1.329	0.412	0.899	0.907	0.969	2.641
9204	chr3	28616443	28623024	+	0	NA	intron (NM_026910, intron 18 of 32)	intron (NM_026910, intron 18 of 32)	-78170	NM_031197	20526	Mm.18443	NM_031197	ENSMUSG00000027690	Slc2a2	AI266973|Glut-2|Glut2	solute carrier family 2 (facilitated glucose transporter), member 2	protein-coding	3.542	0.518	0.248	nan	1.250	0.733	nan	3.581	nan	1.070	1.271	1.461	4.489	3.836	nan	3.940	4.867	nan	0.699	0.703	0.388	0.554	0.328	0.497	2.632
13466	chr7	105476522	105484175	+	0	NA	TTS (NM_028444)	TTS (NM_028444)	1849	NM_028444	109042	Mm.3124	NM_028444	ENSMUSG00000037060	Prkcdbp	3110015B12Rik|6330514M23Rik|SRBC	protein kinase C, delta binding protein	protein-coding	5.510	0.806	0.619	4.560	2.904	1.840	3.021	7.545	3.084	3.201	3.148	1.640	4.638	4.646	4.279	nan	5.331	nan	nan	1.219	1.202	1.892	1.389	1.248	7.445
11432	chr5	92035014	92040827	+	0	NA	intron (NM_001276315, intron 2 of 12)	ID4_|SINE|ID	4776	NM_001276315	53886	Mm.44963	NM_016912	ENSMUSG00000029403	Cdkl2	5330436L21Rik|AI505225|KKIAMRE|Kkm	cyclin-dependent kinase-like 2 (CDC2-related kinase)	protein-coding	2.421	2.738	1.112	1.395	2.200	1.542	4.863	4.566	1.930	1.873	4.276	2.914	4.156	7.581	5.102	2.982	2.487	1.641	0.756	0.406	0.305	0.705	0.513	0.233	1.486
11009	chr5	4495486	4499847	+	0	NA	Intergenic	(TCTG)n|Simple_repeat|Simple_repeat	260550	NM_021457	14362	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	6.549	0.565	0.481	3.811	2.075	1.149	7.691	4.626	3.764	3.868	7.209	3.432	4.415	4.366	6.425	5.210	4.376	4.243	1.219	1.278	0.733	1.201	0.727	0.666	4.522
13669	chr7	123568890	123571442	+	0	NA	Intergenic	L1MA9|LINE|L1	-69717	NM_001081329	210162	Mm.135397	NM_175435	ENSMUSG00000030757	Zkscan2	9430065N20Rik|AW493225|Zfp694	zinc finger with KRAB and SCAN domains 2	protein-coding	4.116	0.623	0.305	2.183	3.090	2.039	4.009	6.770	4.332	3.519	1.284	1.679	8.366	4.176	3.982	4.055	4.167	4.653	1.905	1.455	0.996	1.040	1.184	1.049	1.821
1027	chr1	193005858	193010399	+	0	NA	intron (NM_001301370, intron 2 of 8)	MERVL_2A-int|LTR|ERVL	27647	NM_001301370	329324	Mm.76710	NM_181546	ENSMUSG00000016200	Syt14	B230320I09Rik|sytXIV	synaptotagmin XIV	protein-coding	4.631	4.164	1.409	8.201	4.022	2.469	2.907	4.475	3.159	4.274	2.137	2.042	3.762	6.413	6.532	9.298	2.749	7.002	3.964	1.586	1.377	6.604	nan	1.465	nan
12589	chr6	113411480	113412747	+	0	NA	intron (NM_133923, intron 11 of 12)	CYRA11_Mm|Unknown|Y-chromosome	7227	NM_001033204	101122	Mm.31204	NM_001033204	ENSMUSG00000051169	Rpusd3	AI527266	RNA pseudouridylate synthase domain containing 3	protein-coding	1.424	0.573	0.339	1.295	0.413	0.442	3.433	3.441	0.811	0.999	0.916	0.915	3.028	3.347	2.708	7.294	3.226	2.592	0.365	0.742	0.411	0.316	nan	0.148	1.519
423	chr1	90965183	90969410	+	0	NA	intron (NM_008998, intron 1 of 5)	intron (NM_008998, intron 1 of 5)	371	NM_001159725	19329	Mm.279780	NM_008998	ENSMUSG00000026304	Rab17	AW413472	RAB17, member RAS oncogene family	protein-coding	7.568	2.699	0.528	8.302	3.003	1.777	7.679	7.141	4.062	7.357	4.766	3.913	7.586	7.223	7.133	10.488	5.840	7.863	6.252	3.108	3.183	nan	4.116	4.394	8.861
14076	chr8	24285306	24287370	+	0	NA	Intergenic	RMER19B2|LTR|ERVK	152608	NM_026931	69068	Mm.25775	NM_026931	ENSMUSG00000056313	1810011O10Rik	1110065B09Rik|AW121743|AW321058	RIKEN cDNA 1810011O10 gene	protein-coding	1.866	nan	0.249	0.614	0.463	0.365	3.411	5.629	0.937	1.002	0.562	0.476	4.755	4.931	3.296	5.315	1.471	2.607	0.768	0.854	0.661	nan	0.818	0.544	1.876
1953	chr11	6445872	6449055	+	0	NA	Intergenic	CpG	-3020	NM_001347064	77605	Mm.27624	NM_029938	ENSMUSG00000041126	H2afv	C530002L11Rik|H2a.z-2|H2av	H2A histone family, member V	protein-coding	7.212	10.745	4.570	8.091	6.777	5.599	6.598	6.063	5.341	10.212	4.286	3.092	5.280	7.452	6.984	8.377	6.417	6.391	4.737	nan	5.506	4.948	4.221	5.487	8.300
13096	chr7	31103495	31108550	+	0	NA	intron (NM_001276269, intron 4 of 12)	ZP3AR|Satellite|Satellite	4975	NM_001276269	15451	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	4.335	5.803	2.211	4.289	1.663	1.327	3.913	5.796	2.687	4.499	1.690	2.636	4.025	4.197	4.968	4.477	3.320	4.289	4.587	2.999	1.514	6.509	3.944	2.337	5.510
2757	chr11	98901842	98904674	+	0	NA	3' UTR (NM_197940, exon 8 of 8)	3' UTR (NM_197940, exon 8 of 8)	-4631	NM_001025779	23834	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	6.885	4.308	1.033	6.901	2.198	1.413	4.680	7.937	2.997	5.566	4.518	1.658	2.101	4.578	3.564	3.834	nan	3.857	1.212	nan	2.218	1.840	nan	nan	7.084
10982	chr4	154521939	154527893	+	0	NA	intron (NM_001177995, intron 2 of 15)	intron (NM_001177995, intron 2 of 15)	111451	NR_045643	320939	Mm.436738	NR_045643		5930403L14Rik	-	RIKEN cDNA 5930403L14 gene	ncRNA	4.906	2.235	0.481	8.258	2.539	1.136	5.268	6.114	4.109	6.568	4.260	2.488	5.390	7.766	6.380	7.844	2.420	7.399	3.131	1.195	0.806	8.587	1.111	0.986	9.371
5983	chr16	30788352	30793988	+	0	NA	Intergenic	Intergenic	191447	NM_177632	224093	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	5.571	1.483	0.766	3.604	1.411	0.577	4.618	5.635	3.418	3.286	1.671	1.700	nan	3.898	4.551	6.225	3.551	4.508	2.242	1.915	0.933	3.979	nan	0.978	6.721
4823	chr14	71034730	71036181	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	145348	NM_001302094	14586	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	0.677	4.426	1.729	3.523	1.316	1.464	5.588	1.833	1.062	1.857	0.484	0.617	1.604	5.373	4.879	6.477	1.976	1.184	2.531	nan	1.814	4.664	2.486	1.485	11.772
1222	chr10	39976392	39979227	+	0	NA	intron (NM_001001489, intron 1 of 3)	RLTR1A2_MM|LTR|ERV1	8837	NM_001113385	215928	Mm.31744	NM_001001489	ENSMUSG00000038528	Mfsd4b5	Naglt1c	major facilitator superfamily domain containing 4B5	protein-coding	11.612	9.332	5.249	6.851	6.386	4.571	8.592	8.051	6.882	6.865	8.110	4.370	7.390	9.348	10.091	9.225	9.370	7.410	5.095	3.608	3.383	5.166	3.926	3.816	9.321
11908	chr5	142876625	142879048	+	0	NA	intron (NM_001033312, intron 4 of 4)	ID_B1|SINE|B4	17402	NM_001033312	231863	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	8.257	9.514	4.242	8.836	5.485	3.634	8.594	6.780	4.994	11.317	7.042	4.907	5.547	7.564	7.337	6.510	4.430	7.303	4.750	5.258	4.452	5.726	6.228	6.582	11.520
11954	chr5	147602261	147607026	+	0	NA	intron (NM_010228, intron 15 of 29)	intron (NM_010228, intron 15 of 29)	121345	NM_010228	14254	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	5.510	5.214	1.947	4.647	3.610	2.317	5.651	4.345	nan	6.526	3.118	2.253	3.601	5.959	4.820	5.475	3.998	4.744	1.988	1.945	1.963	2.011	2.274	2.387	6.360
7011	chr18	9449003	9451885	+	0	NA	promoter-TSS (NM_026484)	promoter-TSS (NM_026484)	-294	NM_026484	67974	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	7.634	6.380	1.855	8.619	3.010	1.392	4.177	6.858	4.172	9.133	4.880	2.638	6.109	7.045	6.620	7.913	3.997	7.604	3.309	1.359	1.446	4.033	1.560	1.940	11.168
13336	chr7	82924462	82933440	+	0	NA	Intergenic	Charlie1a|DNA|hAT-Charlie	42440	NR_045855	71285	Mm.76818	NR_045855	ENSMUSG00000109106	4933430H16Rik	-	RIKEN cDNA 4933430H16 gene	ncRNA	5.852	12.258	7.519	nan	3.773	2.901	2.651	1.605	3.190	3.446	2.656	1.209	2.053	3.019	2.623	nan	2.844	3.659	1.098	2.645	2.403	0.875	1.135	1.078	nan
9854	chr3	144376876	144379286	+	0	NA	Intergenic	Intergenic	-172826	NM_010723	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	3.741	3.019	1.319	4.801	2.433	0.945	2.406	4.207	4.154	4.250	2.124	2.529	2.302	4.111	2.803	3.775	3.089	3.791	3.474	1.757	0.865	2.751	3.041	1.922	2.957
13812	chr7	137777333	137781969	+	0	NA	Intergenic	Intergenic	341977	NR_033611	620016	Mm.388932	NR_033611	ENSMUSG00000100863	Gm12669	OTTMUSG00000007920	glutaredoxin 3 pseudogene	pseudo	1.380	nan	0.170	2.002	1.528	0.770	2.096	3.441	nan	1.242	0.874	0.763	2.288	3.781	2.050	2.106	1.570	1.902	1.143	0.716	0.452	1.425	1.028	0.679	1.471
13923	chr7	150546062	150547491	+	0	NA	Intergenic	Intergenic	5231941	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	2.097	nan	0.453	1.935	2.444	2.303	2.389	3.978	2.294	2.101	1.180	0.954	2.384	4.140	2.590	2.701	2.551	2.455	1.555	0.842	0.686	0.892	nan	0.831	3.448
9740	chr3	121237896	121244117	+	0	NA	intron (NM_178936, intron 1 of 7)	intron (NM_178936, intron 1 of 7)	22310	NM_178936	99887	Mm.26088	NM_178936	ENSMUSG00000028132	Tmem56	4930577M16Rik|AU018104|AW109744|C730036B01Rik	transmembrane protein 56	protein-coding	3.097	0.648	0.465	2.152	3.114	2.146	4.027	3.581	2.418	nan	1.483	0.909	4.081	4.959	3.209	nan	4.002	3.445	0.816	0.637	0.761	0.617	nan	0.809	4.012
12936	chr7	16928356	16935739	+	0	NA	Intergenic	ID_B1|SINE|B4	-8015	NM_007590	12315	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|R75142	calmodulin 3	protein-coding	2.025	9.289	6.514	1.681	2.114	1.703	2.282	2.346	2.111	2.342	1.067	0.805	2.133	2.881	2.052	1.739	1.722	2.611	1.382	0.957	0.880	0.754	1.286	0.797	1.765
422	chr1	90696627	90698396	+	0	NA	Intergenic	Intergenic	94086	NM_133805	108679	Mm.119177	NM_133805	ENSMUSG00000034432	Cops8	9430009J09Rik|AA408242|Csn8|Sgn8	COP9 signalosome subunit 8	protein-coding	5.042	0.158	0.411	1.735	2.294	1.389	2.316	1.394	2.364	3.358	1.085	0.731	2.197	4.781	1.409	1.756	2.836	3.627	1.239	1.293	0.686	nan	1.198	0.689	2.575
9885	chr3	153068020	153069608	+	0	NA	Intergenic	Intergenic	83294	NR_108044	75001		NR_108044		4930482G09Rik	-	RIKEN cDNA 4930482G09 gene	ncRNA	3.773	1.188	0.577	1.916	0.480	0.217	0.676	0.601	1.609	1.798	0.371	0.582	1.158	1.111	2.107	1.777	1.850	1.821	2.054	0.503	0.347	2.528	0.525	0.154	5.062
905	chr1	177554273	177556225	+	0	NA	Intergenic	Intergenic	87694	NR_037994	75589	Mm.86666	NR_037994	ENSMUSG00000101746	2310043L19Rik	-	RIKEN cDNA 2310043L19 gene	ncRNA	8.141	7.222	2.229	8.332	2.689	1.206	3.678	5.705	6.190	12.049	3.194	3.489	5.233	5.094	7.056	10.773	4.456	7.948	4.147	1.412	1.463	5.093	2.117	2.408	9.358
3308	chr12	41295438	41296716	+	0	NA	intron (NM_053122, intron 4 of 6)	MTA_Mm|LTR|ERVL-MaLR	189980	NM_001271708	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	4.871	nan	0.767	3.411	1.086	0.691	1.923	3.483	3.191	2.417	1.971	2.451	1.879	3.691	3.742	3.091	1.425	4.795	nan	0.888	0.179	2.461	0.275	0.162	2.944
13968	chr8	3562388	3563626	+	0	NA	Intergenic	B4A|SINE|B4	-4991	NM_001024728	546049	Mm.358733	NM_001024728	ENSMUSG00000065952	C330021F23Rik	2610027C06Rik|Rps23r1|Rps23rg1	RIKEN cDNA C330021F23 gene	protein-coding	5.010	0.575	0.518	0.755	1.191	1.008	2.838	4.638	2.893	2.586	0.790	0.504	2.678	4.185	3.201	3.632	5.466	3.197	0.805	1.331	0.595	0.310	0.687	0.702	3.451
12573	chr6	108778136	108787629	+	0	NA	promoter-TSS (NM_026011)	promoter-TSS (NM_026011)	-177	NM_026011	67166	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	7.641	13.507	6.282	5.512	3.527	1.586	5.973	8.234	4.583	6.137	2.543	1.796	6.570	7.834	7.924	10.583	6.767	6.684	nan	1.905	1.498	1.862	1.673	1.382	8.718
9093	chr2	179709777	179712535	+	0	NA	intron (NM_001316723, intron 2 of 5)	intron (NM_001316723, intron 2 of 5)	265490	NM_001081092	228980	Mm.235542	NM_001081092	ENSMUSG00000039117	Taf4	135kDa|AI450312|TAFII130|TAFII135|Taf2c1|Taf4a	TATA-box binding protein associated factor 4	protein-coding	6.328	9.256	3.513	7.561	4.924	4.290	5.786	7.615	4.018	13.956	4.923	2.836	5.570	6.784	5.706	7.352	5.653	nan	5.036	1.970	4.072	3.618	4.001	7.309	13.506
6400	chr17	24805510	24810688	+	0	NA	intron (NM_029197, intron 1 of 13)	intron (NM_029197, intron 1 of 13)	3717	NM_029197	75178	Mm.52592	NM_029197	ENSMUSG00000024155	Meiob	4930528F23Rik|MLZ-675	meiosis specific with OB domains	protein-coding	5.350	4.088	1.525	5.284	4.292	4.091	8.365	6.787	3.927	6.329	3.507	3.023	5.663	7.512	6.907	8.586	5.022	5.820	4.215	2.291	3.670	4.345	2.708	3.705	9.175
15039	chr9	45819578	45824541	+	0	NA	intron (NM_001081373, intron 2 of 29)	intron (NM_001081373, intron 2 of 29)	6579	NM_001081373	214552	Mm.260103	NM_172531	ENSMUSG00000043987	Cep164	AI450905|BC027092|D030051D21|mKIAA1052	centrosomal protein 164	protein-coding	6.052	5.880	2.888	6.870	4.070	2.442	3.941	6.151	4.597	7.918	3.832	3.106	4.139	7.215	5.751	7.590	4.533	6.525	4.059	3.448	2.777	nan	3.607	3.151	7.879
8049	chr2	27259033	27277614	+	0	NA	intron (NR_133905, intron 27 of 29)	intron (NR_133905, intron 27 of 29)	-21020	NM_138665	192166	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	5.991	11.354	5.870	4.904	5.295	3.215	4.690	7.578	nan	4.389	2.505	2.099	5.207	6.371	4.072	5.151	5.724	5.030	2.652	2.261	1.895	2.711	3.227	2.861	7.361
302	chr1	74290327	74299423	+	0	NA	intron (NM_027154, intron 2 of 11)	intron (NM_027154, intron 2 of 11)	9461	NM_027154	69660	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	6.686	5.797	2.864	4.030	4.432	2.440	5.746	5.087	4.912	4.333	3.542	3.208	6.908	5.643	5.575	7.266	5.992	nan	nan	nan	1.283	0.984	nan	0.809	4.228
1451	chr10	76145369	76146523	+	0	NA	Intergenic	Intergenic	-1505	NM_133184	64452	Mm.154797	NM_133184	ENSMUSG00000020229	Slc5a4a	SGLT3-a	solute carrier family 5, member 4a	protein-coding	3.236	0.751	0.286	2.844	1.218	1.155	1.406	1.027	2.826	3.586	0.535	0.597	2.511	3.439	2.548	3.368	5.695	3.133	nan	0.244	0.300	0.298	0.293	0.290	4.134
13963	chr7	152485229	152486950	+	0	NA	Intergenic	Intergenic	7171254	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	nan	nan	0.800	nan	1.424	0.586	1.314	0.767	nan	2.951	1.129	0.620	1.697	3.539	1.347	1.880	0.854	1.964	2.666	1.725	1.278	2.247	nan	1.936	nan
6732	chr17	50657946	50661899	+	0	NA	intron (NM_013880, intron 4 of 5)	ORR1D1|LTR|ERVL-MaLR	-38759	NM_001297747	12228	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	0.668	0.996	0.880	0.391	0.424	0.155	0.446	0.355	0.586	0.527	0.460	0.195	0.183	nan	0.282	0.493	nan	0.559	4.196	3.361	1.954	2.773	2.346	2.008	0.283
9839	chr3	138151140	138153071	+	0	NA	intron (NM_175389, intron 5 of 7)	intron (NM_175389, intron 5 of 7)	8567	NM_175389	108943	Mm.471692	NM_175389	ENSMUSG00000004127	Trmt10a	3110023L08Rik|AA794508|Rg9mtd2|Rnmtd2	tRNA methyltransferase 10A	protein-coding	4.923	nan	2.349	6.461	3.101	1.672	5.913	4.764	3.859	7.153	3.716	3.195	5.329	5.494	6.445	7.186	5.322	6.149	4.199	1.522	1.811	4.167	2.840	3.075	8.887
2452	chr11	74708673	74715889	+	0	NA	intron (NM_013625, intron 1 of 10)	intron (NM_013625, intron 1 of 10)	11577	NR_037610	18472	Mm.397111	NM_013625	ENSMUSG00000020745	Pafah1b1	LIS-1|Lis1|MMS10-U|Mdsh|Ms10u|Pafaha	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	protein-coding	4.288	4.760	1.839	4.264	2.338	1.251	5.143	5.593	3.005	5.478	2.361	2.445	5.865	6.629	6.266	6.399	4.042	5.654	4.545	1.983	nan	4.607	2.538	2.780	6.683
11935	chr5	145104429	145105630	+	0	NA	intron (NM_019767, intron 8 of 9)	intron (NM_019767, intron 8 of 9)	-9227	NM_023142	11867	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	2.854	1.378	0.828	2.556	2.933	1.556	2.812	3.667	3.733	3.317	2.227	1.838	3.285	4.993	4.529	4.048	2.534	4.046	2.805	1.491	1.076	1.504	2.632	1.546	4.056
14513	chr8	106863337	106865274	+	0	NA	Intergenic	Intergenic	-5937	NM_008217	15118	Mm.56986	NM_008217	ENSMUSG00000031910	Has3	-	hyaluronan synthase 3	protein-coding	8.385	7.779	5.895	6.636	5.966	2.635	4.162	4.794	2.575	5.457	3.644	1.374	2.096	4.675	5.245	5.153	3.181	2.919	2.238	6.388	5.136	nan	5.216	4.272	6.897
13201	chr7	53169450	53174027	+	0	NA	Intergenic	RMER1B|Other|Other	720151	NR_105746	102466619		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	nan	4.660	1.729	2.348	0.789	0.600	0.905	4.660	1.598	2.047	0.884	1.052	2.009	2.283	2.207	nan	0.790	2.158	7.915	5.264	3.613	8.490	6.230	4.716	1.645
10067	chr4	47340177	47343854	+	0	NA	Intergenic	Intergenic	-11207	NM_001312868	21812	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	6.795	nan	0.486	1.498	3.846	1.362	4.767	8.712	3.478	4.253	6.218	3.207	6.295	6.693	6.752	6.814	5.173	nan	1.063	1.073	0.367	nan	0.911	0.565	5.847
5400	chr15	78358116	78368945	+	0	NA	Intergenic	Intergenic	14931	NR_106138	102466845		NR_106138	ENSMUSG00000099059	Mir7676-2	Gm27790|mmu-mir-7676-2	microRNA 7676-2	ncRNA	6.126	nan	1.222	nan	2.290	1.391	nan	11.205	3.327	nan	nan	1.860	6.007	5.854	6.394	5.811	nan	5.253	3.453	1.695	1.821	nan	3.140	2.261	6.418
3152	chr12	3758831	3761599	+	0	NA	intron (NR_027869, intron 16 of 20)	intron (NR_027869, intron 16 of 20)	-46765	NM_007872	13435	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	3.323	3.389	1.878	3.014	1.807	0.705	1.699	2.075	1.801	1.902	1.875	1.334	2.359	2.024	2.462	2.440	1.925	3.211	3.409	3.262	1.564	3.843	2.893	2.103	2.311
15259	chr9	70069337	70071146	+	0	NA	Intergenic	Intergenic	-32153	NM_028087	72077	Mm.195555	NM_028087	ENSMUSG00000032226	Gcnt3	2010013H22Rik|2210021I22Rik|2210401J11Rik	glucosaminyl (N-acetyl) transferase 3, mucin type	protein-coding	2.403	3.454	1.479	2.371	1.679	0.856	2.024	1.085	2.163	2.679	1.333	0.947	1.820	2.240	nan	3.126	1.714	2.993	nan	1.412	0.743	0.707	0.847	0.597	3.342
11019	chr5	9389893	9391179	+	0	NA	intron (NM_172706, intron 2 of 21)	intron (NM_172706, intron 2 of 21)	14832	NR_030537	100124492		NR_030537	ENSMUSG00000077896	Mir879	Mirn879|mir-879|mmu-mir-879	microRNA 879	ncRNA	2.768	0.384	0.020	1.580	3.322	2.468	4.234	0.474	2.811	2.580	0.417	0.684	2.378	3.175	2.551	1.989	3.178	2.243	0.828	0.702	0.969	1.911	0.382	0.447	1.864
8438	chr2	91148285	91150551	+	0	NA	intron (NM_001177720, intron 27 of 34)	Lx5c|LINE|L1	29903	NM_001177720	228355	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	2.128	1.703	0.819	2.094	0.826	0.611	1.104	0.954	1.584	0.768	0.550	0.958	1.685	1.071	1.529	2.063	1.997	2.236	4.009	3.748	4.071	5.083	3.283	3.158	1.800
12564	chr6	108430376	108432209	+	0	NA	intron (NM_010585, intron 40 of 61)	intron (NM_010585, intron 40 of 61)	-58451	NR_106121	102465766		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	2.088	1.784	0.976	2.400	2.422	0.865	5.007	2.778	3.275	3.803	0.585	1.096	5.793	5.117	5.445	8.119	3.700	5.069	nan	0.893	0.431	0.844	0.379	0.342	2.171
8996	chr2	165846056	165847953	+	0	NA	intron (NM_027230, intron 4 of 23)	intron (NM_027230, intron 4 of 23)	11169	NM_001252585	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	5.333	6.630	3.010	4.173	2.890	2.118	1.908	5.190	4.141	3.488	2.099	2.283	3.272	3.705	3.122	3.343	3.279	3.969	3.364	1.709	1.788	2.887	2.471	1.199	2.996
6000	chr16	32161793	32164560	+	0	NA	5' UTR (NM_146069, exon 2 of 4)	5' UTR (NM_146069, exon 2 of 4)	2300	NM_146069	224109	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	5.723	9.030	6.000	4.188	2.906	1.940	1.892	1.511	2.773	2.992	1.656	1.259	nan	2.209	2.330	3.218	2.326	3.390	1.085	2.693	2.604	0.473	nan	0.939	3.080
3366	chr12	58633772	58657297	+	0	NA	Intergenic	Lx8|LINE|L1	366483	NM_009147	20334	Mm.491137	NM_009147	ENSMUSG00000020986	Sec23a	Msec23|Sec23r	SEC23 homolog A, COPII coat complex component	protein-coding	6.857	nan	0.466	5.272	3.856	2.372	8.136	5.127	5.278	7.799	7.736	5.460	7.172	7.998	nan	nan	7.614	nan	9.169	4.686	3.335	9.543	7.797	6.676	13.091
15041	chr9	45927805	45929725	+	0	NA	TTS (NM_011526)	TTS (NM_011526)	7293	NM_011526	21345	Mm.283283	NM_011526	ENSMUSG00000032085	Tagln	Sm22|Sm22a|Ws310	transgelin	protein-coding	4.597	2.032	0.563	3.345	2.619	1.504	3.280	3.948	3.507	2.467	4.910	3.126	3.022	4.170	3.738	4.171	2.219	4.916	1.479	1.406	0.769	nan	0.719	0.625	3.908
9346	chr3	60316680	60318161	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-155410	NM_001253713	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	4.074	2.374	2.225	nan	4.014	2.220	2.309	2.730	3.290	2.524	2.592	2.261	3.033	3.895	nan	2.817	3.242	nan	2.225	3.801	1.969	3.609	1.989	1.092	1.842
7908	chr19	58912803	58914846	+	0	NA	intron (NM_001327998, intron 2 of 12)	intron (NM_001327998, intron 2 of 12)	-2065	NR_037247	100526480		NR_037247	ENSMUSG00000092813	Mir3086	mir-3086|mmu-mir-3086	microRNA 3086	ncRNA	3.965	1.815	0.419	1.509	0.917	0.191	5.015	6.015	1.553	2.342	0.443	0.345	2.720	4.029	3.360	5.063	4.363	3.270	0.413	0.383	0.394	0.376	0.132	0.244	4.592
15359	chr9	83815241	83816345	+	0	NA	Intergenic	Intergenic	-9488	NM_148941	83603	Mm.83949	NM_148941	ENSMUSG00000032262	Elovl4	-	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4	protein-coding	2.107	0.466	0.253	1.386	1.375	0.907	2.498	2.601	2.709	2.736	4.512	1.248	2.642	4.125	2.832	2.961	2.697	1.770	0.928	0.428	0.226	0.494	0.725	0.797	2.312
14061	chr8	18691383	18697283	+	0	NA	intron (NM_007426, intron 8 of 8)	intron (NM_007426, intron 8 of 8)	47229	NM_007426	11601	Mm.439874	NM_007426	ENSMUSG00000031465	Angpt2	Agpt2|Ang-2|Ang2	angiopoietin 2	protein-coding	0.802	0.751	0.383	1.672	0.472	0.270	0.613	0.737	0.856	0.574	1.243	0.376	0.629	0.713	0.797	nan	0.780	1.593	3.955	2.502	2.048	7.920	2.395	1.670	1.183
7418	chr18	80446408	80449336	+	0	NA	intron (NM_026295, intron 8 of 12)	intron (NM_026295, intron 8 of 12)	21795	NM_026295	67655	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	6.920	nan	0.449	1.592	5.490	6.111	5.710	5.512	2.268	nan	1.230	1.180	2.572	3.862	2.337	2.467	3.311	3.455	0.876	nan	1.016	0.656	1.021	1.389	4.284
13898	chr7	148724588	148727451	+	0	NA	Intergenic	Intergenic	3411184	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	10.975	7.045	3.618	7.218	8.036	4.936	8.218	10.751	nan	6.582	8.755	4.412	6.627	10.054	6.621	6.708	7.551	6.117	4.785	8.083	4.168	4.063	nan	5.699	7.875
13251	chr7	71536309	71538404	+	0	NA	Intergenic	Intergenic	-372339	NR_130995	78156	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	6.096	7.045	2.798	7.823	2.814	1.315	5.431	7.793	4.384	5.808	5.128	3.660	6.326	6.771	7.487	8.419	6.037	6.852	4.107	1.966	1.822	4.714	1.805	1.699	9.396
10547	chr4	128594673	128596548	+	0	NA	intron (NM_177758, intron 2 of 7)	Lx8|LINE|L1	14488	NM_177758	269585	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding	6.176	0.515	0.281	6.059	2.972	1.620	10.501	4.137	3.705	5.913	1.179	0.686	5.772	6.839	nan	7.775	3.858	7.843	5.986	2.348	2.015	10.351	4.945	5.108	11.280
8959	chr2	164228621	164233752	+	0	NA	Intergenic	L1MA5A|LINE|L1	7155	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	8.253	1.195	0.481	5.651	3.502	1.895	6.179	3.133	5.297	9.891	0.686	0.673	9.700	9.056	6.554	10.804	9.042	8.709	nan	0.828	0.884	1.089	1.408	0.901	18.141
15350	chr9	80011595	80015907	+	0	NA	Intergenic	ORR1A2|LTR|ERVL-MaLR	-35869	NM_001081243	70598	Mm.23049	NM_001081243	ENSMUSG00000034898	Filip1	5730485H21Rik|AI843021	filamin A interacting protein 1	protein-coding	4.412	3.633	1.658	3.917	1.370	1.131	3.953	5.730	3.171	3.922	3.196	2.778	5.366	5.037	4.660	5.489	2.908	4.333	1.932	nan	0.965	2.183	1.418	1.254	nan
1468	chr10	77922507	77924124	+	0	NA	intron (NM_138301, intron 24 of 33)	(CACCAT)n|Simple_repeat|Simple_repeat	-20779	NM_145152	237387	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	2.946	2.522	1.158	nan	1.083	1.214	2.936	4.554	2.620	1.681	1.902	1.588	3.388	3.523	2.845	3.913	1.650	2.100	nan	1.392	1.464	1.403	1.529	1.975	3.113
3184	chr12	13083679	13085812	+	0	NA	Intergenic	Intergenic	-142909	NM_008709	18109	Mm.16469	NM_008709	ENSMUSG00000037169	Mycn	N-myc|Nmyc|Nmyc-1|Nmyc1|bHLHe37|c-nmyc	v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived	protein-coding	4.920	1.074	0.520	1.758	0.313	0.193	3.990	1.216	2.455	2.698	0.838	0.349	2.638	4.040	5.484	5.861	3.060	3.134	1.324	0.391	0.189	1.190	0.486	0.464	7.858
1726	chr10	111150257	111153041	+	0	NA	Intergenic	Lx6|LINE|L1	-13153	NM_001003717	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	3.928	0.452	0.373	2.581	5.897	3.326	5.862	4.503	6.801	5.527	6.405	7.255	4.702	6.694	5.142	4.490	3.250	5.932	0.797	0.879	0.220	0.636	0.862	0.479	4.230
14789	chr8	128044616	128046816	+	0	NA	Intergenic	Intergenic	232509	NR_105822	102465212		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	7.603	nan	0.867	3.813	3.908	2.719	2.110	4.655	4.381	5.340	2.171	2.151	3.974	5.127	nan	6.441	3.925	5.362	nan	1.815	0.877	nan	1.042	nan	5.826
10695	chr4	134848448	134852361	+	0	NA	intron (NM_025382, intron 1 of 10)	URR1B|DNA|hAT-Charlie	2941	NM_025382	66146	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61	transmembrane protein 57	protein-coding	nan	2.467	1.574	4.328	4.564	4.407	2.669	2.522	nan	2.687	2.489	2.930	1.753	3.584	2.356	2.233	2.432	nan	2.310	1.999	2.520	2.330	nan	3.525	2.901
13562	chr7	116813082	116817132	+	0	NA	Intergenic	Intergenic	310738	NM_001130479	53322	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	4.395	1.619	0.574	6.881	2.331	1.095	3.374	3.921	3.186	3.354	3.829	1.620	3.242	nan	4.214	4.685	2.629	6.125	1.536	0.772	0.575	2.885	0.676	0.883	5.956
7061	chr18	21449576	21451240	+	0	NA	Intergenic	B1F2|SINE|Alu	-150269	NM_001033445	381126	Mm.312276	NM_001033445	ENSMUSG00000042680	Garem1	C86169|Fam59a|Garem|Gm944|mKIAA4238	GRB2 associated regulator of MAPK1 subtype 1	protein-coding	4.145	0.574	0.402	1.973	1.194	0.619	2.383	5.530	3.468	2.413	1.213	0.706	6.198	3.649	3.308	4.461	3.107	4.794	1.442	0.872	0.295	1.537	0.453	0.118	2.982
13989	chr8	10990073	11010543	+	0	NA	intron (NM_001081212, intron 1 of 1)	intron (NM_001081212, intron 1 of 1)	-7542	NR_046017	619321	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	6.625	3.354	1.012	6.099	3.953	2.232	6.565	9.302	5.500	9.191	3.104	2.586	8.746	9.081	9.412	11.863	7.004	8.140	2.256	1.917	1.951	6.634	1.599	1.902	10.468
1494	chr10	79859707	79867242	+	0	NA	TTS (NR_105875)	TTS (NR_105875)	887	NR_105875	102465549		NR_105875	ENSMUSG00000098562	Mir6910	Gm27763|mmu-mir-6910	microRNA 6910	ncRNA	6.196	9.898	3.531	4.881	3.031	2.356	7.044	4.527	3.240	5.679	3.369	1.951	4.160	6.007	6.427	6.943	5.643	5.388	nan	2.026	2.690	3.204	2.250	3.220	9.953
8573	chr2	119233115	119235979	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	-2813	NM_016907	20732	Mm.104955	NM_016907	ENSMUSG00000027315	Spint1	HAI-1	serine protease inhibitor, Kunitz type 1	protein-coding	6.743	0.946	0.382	4.452	2.362	2.143	5.342	4.557	4.123	4.171	1.083	1.236	5.303	4.153	3.055	5.722	7.079	6.380	1.787	1.859	2.108	2.212	2.706	2.718	5.817
12529	chr6	99090495	99095505	+	0	NA	intron (NM_001347345, intron 5 of 19)	intron (NM_001347345, intron 5 of 19)	-64702	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	3.878	0.806	0.673	4.595	2.542	2.027	5.322	6.353	6.095	5.919	3.766	2.352	6.584	7.534	5.633	7.865	4.940	5.830	nan	nan	0.829	1.319	1.188	0.760	4.161
10536	chr4	127901541	127905097	+	0	NA	Intergenic	Intergenic	67522	NM_001134733	635169	Mm.346755	NM_001134733	ENSMUSG00000028813	CK137956	-	cDNA sequence CK137956	protein-coding	0.207	0.552	0.154	0.301	0.081	0.001	0.177	0.263	0.256	0.256	0.164	0.114	0.145	0.197	nan	0.495	0.269	0.342	1.219	0.618	0.379	3.846	0.601	0.239	0.442
9328	chr3	57378853	57380599	+	0	NA	Intergenic	Intergenic	-45684	NM_145539	229302	Mm.26618	NM_145539	ENSMUSG00000027801	Tm4sf4	Iltmp	transmembrane 4 superfamily member 4	protein-coding	11.016	2.932	0.487	15.509	5.902	3.066	11.581	8.775	7.301	14.681	7.730	4.844	12.363	13.016	10.582	13.273	6.957	12.531	0.637	0.430	1.124	1.619	0.352	0.655	24.206
7008	chr18	7630630	7632620	+	0	NA	Intergenic	PB1D10|SINE|Alu	-4762	NM_001161620	75739	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	nan	0.635	0.493	0.966	1.463	0.784	0.694	2.568	1.210	1.142	1.031	0.299	nan	3.437	1.629	1.550	1.411	1.129	0.629	0.677	0.631	0.409	0.640	0.689	1.366
12514	chr6	97298968	97307224	+	0	NA	intron (NM_001346639, intron 17 of 22)	intron (NM_001346639, intron 17 of 22)	-50316	NM_001081157	320502	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	4.700	0.904	0.385	3.039	2.714	1.507	9.112	5.466	3.563	3.574	1.060	2.591	8.021	7.267	7.971	10.816	7.069	5.507	nan	nan	0.762	1.687	1.574	1.113	4.896
6132	chr16	55786852	55790279	+	0	NA	Intergenic	B4|SINE|B4	33573	NM_001159394	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	1.038	2.145	1.283	0.381	0.332	0.107	0.297	0.532	1.290	0.781	6.545	4.257	0.146	0.483	0.443	nan	0.430	0.713	nan	0.561	0.300	0.593	0.250	0.235	0.835
1906	chr11	4017570	4019587	+	0	NA	Intergenic	RLTR45-int|LTR|ERVK	-13204	NM_146013	103655	Mm.337476	NM_146013	ENSMUSG00000019368	Sec14l4	AI256582|AW536553|SPF|TAP	SEC14-like lipid binding 4	protein-coding	3.806	2.475	0.422	6.537	1.330	0.580	3.573	3.527	3.495	5.094	1.919	1.193	4.638	5.341	5.611	5.774	2.329	6.864	2.336	nan	0.904	3.237	0.888	0.715	6.828
13101	chr7	31343323	31345246	+	0	NA	Intergenic	L1Md_F2|LINE|L1	17788	NM_001270541	100043326	Mm.479858	NM_001270541	ENSMUSG00000078754	Scgb2b3	Abpbg3|Gm4362	secretoglobin, family 2B, member 3	protein-coding	7.147	6.446	3.382	5.260	4.698	2.255	7.268	9.236	3.907	4.762	3.581	3.455	4.968	6.823	6.252	6.386	5.899	6.386	4.243	6.029	3.274	4.258	5.274	3.737	5.759
12533	chr6	99153191	99155199	+	0	NA	intron (NM_001347345, intron 5 of 19)	ID_B1|SINE|B4	112320	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	3.083	3.027	2.394	2.834	3.644	2.301	1.427	4.977	3.842	3.108	4.190	4.534	1.517	3.679	2.849	2.720	3.463	2.209	nan	nan	1.139	0.906	1.414	0.908	2.079
9245	chr3	37860305	37862638	+	0	NA	Intergenic	RSINE1|SINE|B4	-37342	NR_040559	626410	Mm.389417	NR_040559	ENSMUSG00000106461	Gm20755	-	predicted gene, 20755	ncRNA	3.311	0.762	0.504	2.322	2.222	1.656	9.422	5.039	nan	3.539	4.862	2.777	7.773	6.516	7.152	7.430	3.869	5.211	1.488	1.121	0.448	nan	0.980	0.658	3.869
8042	chr2	26762868	26767902	+	0	NA	Intergenic	Lx2B2|LINE|L1	-94103	NM_010695	16821	Mm.123925	NM_010695	ENSMUSG00000026919	Lcn4	A630045M08Rik|Vnsp2	lipocalin 4	protein-coding	10.424	7.136	2.171	7.799	3.825	3.345	8.747	10.328	nan	6.145	5.069	3.386	7.723	9.242	9.011	10.506	7.135	7.996	6.643	3.242	2.862	6.382	5.501	5.027	16.603
15044	chr9	46080775	46082051	+	0	NA	intron (NM_027498, intron 1 of 24)	B4A|SINE|B4	68593	NM_027498	70661	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	5.454	9.434	3.215	6.672	3.731	3.584	3.946	4.922	4.114	4.836	3.990	1.885	2.954	4.327	5.917	7.251	3.725	6.559	4.122	3.395	3.380	5.673	3.735	6.581	9.032
3235	chr12	25777327	25786659	+	0	NA	Intergenic	Intergenic	428512	NR_131149	629481	Mm.390460	NR_131149		Gm29687	-	predicted gene, 29687	ncRNA	9.623	7.500	3.138	6.975	3.074	1.798	11.042	8.472	5.712	7.340	6.623	5.290	7.651	9.537	12.100	11.491	9.240	7.841	5.045	3.442	2.158	5.454	4.117	3.254	15.171
5430	chr15	79513377	79515995	+	0	NA	Intergenic	Intergenic	-1722	NM_134090	105785	Mm.298199	NM_134090	ENSMUSG00000010830	Kdelr3	AI173274	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3	protein-coding	3.823	1.572	0.525	3.177	2.313	0.687	4.059	15.750	2.472	2.584	3.396	1.954	4.845	5.264	4.176	4.104	4.796	4.090	2.750	1.353	0.598	3.291	2.045	0.969	3.152
5052	chr15	11673468	11677740	+	0	NA	Intergenic	Intergenic	230070	NM_008728	18162	Mm.25259	NM_008728	ENSMUSG00000022206	Npr3	ANP-C|ANPR-C|EF-2|NPR-C|lgj|stri	natriuretic peptide receptor 3	protein-coding	6.853	0.909	0.422	4.617	2.025	0.806	1.877	5.156	3.161	3.831	1.475	0.861	7.137	4.976	3.594	4.887	8.177	4.218	0.569	0.800	0.497	0.515	0.518	0.480	3.532
8787	chr2	148682219	148683675	+	0	NA	intron (NM_028986, intron 1 of 5)	intron (NM_028986, intron 1 of 5)	1827	NM_028986	74533	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	9.621	2.979	1.721	5.466	5.050	2.752	6.900	9.440	4.259	4.923	2.278	3.183	5.917	7.617	5.834	7.745	7.098	6.571	nan	1.706	0.589	2.897	2.608	1.519	4.734
4435	chr13	115719612	115725075	+	0	NA	Intergenic	Intergenic	587345	NM_021459	16392	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	3.945	1.273	0.674	2.524	1.107	0.516	6.401	5.391	2.148	1.732	4.160	2.993	3.862	3.387	5.736	1.904	1.260	2.579	0.329	0.410	0.549	0.412	0.254	0.264	nan
10932	chr4	150130817	150133526	+	0	NA	intron (NM_019741, intron 6 of 13)	PB1D7|SINE|Alu	12827	NM_019741	56485	Mm.260220	NM_019741	ENSMUSG00000028976	Slc2a5	AI526984|Glut5|Slc5a	solute carrier family 2 (facilitated glucose transporter), member 5	protein-coding	5.091	nan	0.704	4.588	2.829	1.751	3.115	3.347	2.985	4.196	3.872	2.010	4.882	4.917	4.215	4.700	2.931	3.672	2.780	0.848	0.593	1.544	1.280	1.748	6.584
2327	chr11	63952177	63953692	+	0	NA	Intergenic	Intergenic	-11292	NR_131111	78883	Mm.410764	NR_131111	ENSMUSG00000086359	9630013K17Rik	-	RIKEN cDNA 9630013K17 gene	ncRNA	3.427	0.569	0.382	2.425	3.091	1.527	0.974	2.784	2.254	3.217	0.636	0.328	1.990	6.045	1.770	1.952	1.712	3.242	0.758	0.966	1.005	0.705	nan	0.562	nan
6384	chr17	24129267	24130475	+	0	NA	intron (NM_001286662, intron 1 of 13)	intron (NM_001286662, intron 1 of 13)	11723	NM_011062	18607	Mm.10504	NM_011062	ENSMUSG00000024122	Pdpk1	Pdk1	3-phosphoinositide dependent protein kinase 1	protein-coding	2.444	1.745	0.804	1.917	1.055	0.771	1.997	2.913	1.911	1.864	1.732	1.391	2.109	3.567	2.575	2.493	1.245	2.021	1.231	0.522	0.858	0.964	1.719	1.998	2.663
3179	chr12	8960465	8962559	+	0	NA	intron (NM_010770, intron 5 of 7)	intron (NM_010770, intron 5 of 7)	-12489	NM_001159527	74682	Mm.87389	NM_172470	ENSMUSG00000066643	Wdr35	4930459M12Rik|4931430C06|mKIAA1336	WD repeat domain 35	protein-coding	3.938	0.561	0.342	2.191	1.984	1.112	4.391	3.491	4.489	5.398	0.886	1.112	6.304	6.769	4.671	6.946	4.715	5.771	1.109	1.311	0.905	2.499	0.998	0.481	5.961
3189	chr12	15623242	15626983	+	0	NA	Intergenic	L1Md_T|LINE|L1	175989	NR_105809	102465204		NR_105809	ENSMUSG00000098480	Mir6387	Gm27281|mmu-mir-6387	microRNA 6387	ncRNA	2.168	0.645	0.342	1.937	2.404	0.623	3.987	2.512	1.948	1.996	0.568	0.634	2.492	2.774	4.623	4.767	3.467	2.894	1.007	0.470	0.164	0.745	0.342	0.117	1.449
3569	chr12	86514896	86519712	+	0	NA	intron (NM_001159500, intron 6 of 6)	intron (NM_001159500, intron 6 of 6)	95660	NM_011934	26380	Mm.235550	NM_011934	ENSMUSG00000021255	Esrrb	Err2|Errb|Estrrb|Nr3b2	estrogen related receptor, beta	protein-coding	1.998	1.845	0.431	2.604	0.437	0.205	0.681	1.257	0.892	1.345	0.784	0.462	1.079	0.981	1.609	1.756	0.756	1.564	5.744	1.143	1.424	6.314	1.419	1.305	2.830
11643	chr5	118928673	118931425	+	0	NA	Intergenic	Intergenic	-22290	NR_040694	74627	Mm.410828	NR_040694	ENSMUSG00000107144	4930413E15Rik	-	RIKEN cDNA 4930413E15 gene	ncRNA	2.360	3.089	2.280	1.834	5.050	3.909	1.451	1.485	2.453	2.192	1.880	1.446	0.781	1.511	0.920	1.002	1.039	1.393	nan	nan	1.221	0.516	nan	0.630	1.044
7286	chr18	60796237	60799959	+	0	NA	Intergenic	B1_Mm|SINE|Alu	-5751	NM_001042605	16149	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	7.751	1.441	1.105	4.525	10.754	6.432	7.270	9.130	4.438	6.539	2.740	2.809	9.468	8.028	4.254	5.167	4.830	5.016	nan	1.624	1.356	nan	1.683	1.193	nan
9172	chr3	21904280	21908026	+	0	NA	Intergenic	Intergenic	-170499	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	2.270	nan	0.861	2.869	4.394	2.907	4.838	2.293	3.169	3.286	0.939	0.769	4.544	5.776	3.636	4.406	3.791	4.250	0.759	0.914	0.738	0.543	0.618	0.634	3.826
6152	chr16	64850502	64854001	+	0	NA	promoter-TSS (NM_001347245)	promoter-TSS (NM_001347245)	166	NM_178647	106143	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	10.466	11.905	3.579	10.218	5.493	5.151	8.355	10.707	5.232	14.314	8.011	4.213	8.000	9.421	8.979	11.392	6.698	9.757	5.753	3.322	4.369	6.027	4.271	5.410	16.643
13769	chr7	134506075	134507639	+	0	NA	Intergenic	Intergenic	-130029	NM_001081331	71007	Mm.334285	NM_001081331	ENSMUSG00000030994	D7Ertd443e	4933400E14Rik|FATS|Gm497	DNA segment, Chr 7, ERATO Doi 443, expressed	protein-coding	2.537	nan	1.388	5.426	2.537	2.980	2.338	4.649	nan	3.566	1.249	1.937	3.643	4.534	5.120	3.474	3.426	4.422	4.103	4.416	3.503	3.151	5.348	5.264	3.929
11579	chr5	113637932	113640187	+	0	NA	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	11331	NM_008153	14747	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	4.298	2.126	0.382	6.656	0.989	0.568	2.092	2.011	2.836	2.679	4.045	2.748	1.578	2.414	2.677	3.172	1.265	4.348	nan	nan	1.422	3.807	nan	1.326	4.559
6977	chr18	3838630	3841896	+	0	NA	Intergenic	B2_Mm1a|SINE|B2	-325569	NM_026092	67328	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	5.987	0.709	0.512	2.680	1.461	1.130	4.638	6.288	3.712	3.663	2.076	2.445	5.715	3.405	4.191	4.395	4.303	4.831	6.305	3.805	2.267	5.989	7.932	6.434	4.811
1593	chr10	91506807	91510190	+	0	NA	Intergenic	Intergenic	-336879	NM_001080130	21917	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	nan	0.446	0.277	0.219	0.225	0.200	0.368	0.460	0.523	0.416	0.477	0.271	0.270	nan	0.345	0.543	0.482	nan	3.729	3.093	2.029	5.451	nan	3.793	0.359
10534	chr4	127004879	127010376	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-13674	NR_045010	71514	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|OTTMUSG00000009329|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	4.462	0.452	0.238	3.047	3.276	1.515	8.323	5.815	2.714	3.844	3.185	2.453	4.016	6.311	nan	6.055	3.789	5.467	1.758	0.914	0.757	0.760	1.283	1.135	12.531
705	chr1	138588905	138598657	+	0	NA	intron (NM_001311148, intron 1 of 7)	intron (NM_001311148, intron 1 of 7)	25976	NM_021605	59125	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	11.547	1.799	1.226	nan	7.116	6.391	8.049	5.767	4.523	5.109	2.347	1.709	6.760	nan	6.014	nan	7.701	6.765	0.697	0.917	1.148	0.800	0.897	0.971	7.386
6291	chr17	4196672	4198114	+	0	NA	Intergenic	Intergenic	-75291	NR_045462	78043	Mm.398313	NR_045462		4930548J01Rik	1700113K09Rik	RIKEN cDNA 4930548J01 gene	ncRNA	3.551	0.743	0.334	1.993	0.893	0.329	4.409	5.186	3.470	2.372	0.217	0.609	4.644	4.545	5.418	6.098	2.557	4.160	3.459	3.256	1.199	5.784	4.375	1.765	3.824
4763	chr14	65271012	65274240	+	0	NA	intron (NM_015795, intron 2 of 7)	intron (NM_015795, intron 2 of 7)	5925	NM_015795	50759	Mm.65308	NM_015795	ENSMUSG00000034532	Fbxo16	4932435C24Rik|Fbx16	F-box protein 16	protein-coding	7.562	4.953	2.033	6.565	4.647	3.202	5.215	10.533	4.631	6.554	2.973	3.399	4.424	7.345	6.025	6.767	4.032	6.569	3.523	nan	2.338	4.167	5.016	4.422	6.083
1720	chr10	110995008	110996835	+	0	NA	intron (NM_172554, intron 1 of 16)	MIR|SINE|MIR	14145	NM_172554	320150	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|Hip14	zinc finger, DHHC domain containing 17	protein-coding	2.819	1.823	1.015	2.079	2.875	1.717	3.488	3.737	3.310	4.477	4.025	3.781	3.388	4.436	4.276	4.601	3.783	4.925	2.779	1.624	0.985	2.098	2.087	2.078	3.397
5786	chr16	10586317	10588250	+	0	NA	intron (NM_001204229, intron 9 of 22)	intron (NM_001204229, intron 9 of 22)	41944	NM_001204229	74374	Mm.159176	NM_177562	ENSMUSG00000068663	Clec16a	4932416N17Rik|curt|mKIAA0350	C-type lectin domain family 16, member A	protein-coding	1.843	1.878	0.400	1.222	0.412	0.252	nan	1.071	1.732	2.091	0.300	0.586	1.939	1.776	1.850	3.357	1.491	2.621	0.733	0.381	0.138	1.003	0.713	0.149	5.371
15074	chr9	50648134	50652235	+	0	NA	intron (NM_145614, intron 6 of 13)	intron (NM_145614, intron 6 of 13)	9596	NM_145614	235339	Mm.285076	NM_145614	ENSMUSG00000000168	Dlat	6332404G05Rik|DLTA|PDC-E2	dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	protein-coding	4.176	1.407	0.767	2.042	1.077	0.626	3.179	4.048	2.359	3.951	1.312	1.317	4.969	5.636	nan	5.924	4.396	1.940	1.367	1.206	1.212	nan	1.514	1.201	6.071
4471	chr14	12384716	12388329	+	0	NA	intron (NM_012061, intron 27 of 28)	intron (NM_012061, intron 27 of 28)	-40657	NM_080433	54713	Mm.34644	NM_080433	ENSMUSG00000021743	Fezf2	AI451466|AI852056|Fez|Fezl|Zfp312	Fez family zinc finger 2	protein-coding	7.317	1.809	0.435	9.524	2.281	1.160	5.818	6.704	4.518	9.181	4.987	3.867	4.932	6.811	8.911	8.015	4.471	9.544	3.769	2.174	1.847	4.565	1.388	1.241	15.965
14833	chr8	129707307	129708654	+	0	NA	Intergenic	Intergenic	444350	NR_144501	102635552		NM_001346808		Gm32856	-	predicted gene, 32856	protein-coding	3.000	nan	0.293	nan	2.093	0.742	3.852	2.483	1.899	1.846	3.514	0.868	4.001	3.597	4.285	3.990	2.788	2.951	nan	1.103	0.608	3.257	1.413	nan	3.365
13451	chr7	104502768	104506905	+	0	NA	intron (NM_199146, intron 1 of 7)	Lx4A|LINE|L1	3013	NM_199146	209387	Mm.277377	NM_199146	ENSMUSG00000057596	Trim30d	AI451617|TRIM30-3|Trim79	tripartite motif-containing 30D	protein-coding	10.739	4.959	1.724	10.554	5.260	2.235	7.521	10.275	8.729	10.624	6.816	2.905	12.372	14.264	13.038	11.493	8.067	11.023	nan	0.942	0.984	1.595	0.654	0.368	13.838
14695	chr8	122994324	122996981	+	0	NA	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	46632	NR_037865	77087	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.990	0.932	0.766	1.385	0.605	0.792	1.005	1.523	0.569	0.944	0.407	0.302	0.725	1.583	1.086	nan	1.156	1.072	0.926	3.167	3.159	3.482	2.067	1.358	1.394
912	chr1	179383212	179384440	+	0	NA	intron (NM_027188, intron 5 of 11)	intron (NM_027188, intron 5 of 11)	134177	NM_027188	69726	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	2.601	0.754	0.227	1.499	1.588	0.561	4.346	4.106	3.597	2.662	1.745	1.753	5.464	4.331	3.428	4.800	2.220	4.252	2.127	0.859	0.661	6.543	0.640	0.226	1.232
13936	chr7	151193256	151196814	+	0	NA	Intergenic	Intergenic	5880200	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	4.412	nan	0.256	nan	0.975	0.303	4.823	8.024	nan	3.842	0.755	0.344	7.829	8.609	5.001	6.933	4.989	4.788	0.576	0.577	0.448	1.119	nan	0.269	7.597
12176	chr6	38782197	38786686	+	0	NA	intron (NM_001294144, intron 2 of 14)	intron (NM_001294144, intron 2 of 14)	52870	NM_001136065	15258	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	2.262	1.294	0.668	3.913	5.920	4.132	1.993	2.993	3.272	2.697	0.899	1.088	2.382	4.554	2.454	nan	1.167	nan	nan	1.428	0.928	nan	nan	1.659	nan
8678	chr2	131816890	131819301	+	0	NA	Intergenic	PB1D10|SINE|Alu	29561	NR_029381	414081	Mm.246905	NR_029381	ENSMUSG00000086822	5330413P13Rik	-	RIKEN cDNA 5330413P13 gene	ncRNA	2.479	9.076	3.833	2.896	3.460	1.186	1.125	0.873	4.972	4.927	1.896	1.425	2.306	3.056	1.949	nan	2.140	2.801	1.322	1.500	0.793	1.032	1.121	0.589	1.877
1432	chr10	75105341	75113245	+	0	NA	intron (NM_001081412, intron 1 of 22)	L1MEf|LINE|L1	48397	NM_001081412	110279	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	3.901	1.609	0.458	3.530	3.501	2.245	4.992	4.582	3.461	7.219	0.988	1.010	5.767	8.858	6.644	7.119	3.415	6.097	nan	0.459	0.434	0.851	0.514	0.324	10.838
12554	chr6	103324131	103325628	+	0	NA	Intergenic	L1_Mur1|LINE|L1	-185997	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	0.958	0.500	0.257	1.167	1.026	0.313	2.491	3.715	1.055	1.100	0.712	0.229	2.023	2.977	2.709	1.399	3.641	1.325	nan	0.528	0.082	1.368	0.075	0.179	nan
12319	chr6	72300668	72306726	+	0	NA	promoter-TSS (NM_001282071)	promoter-TSS (NM_001282071)	-913	NM_001282071	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	5.759	2.313	0.755	4.649	2.326	1.525	5.790	5.758	3.265	4.437	1.717	0.999	6.118	7.646	5.978	9.387	6.983	6.338	0.916	0.826	0.830	1.178	0.625	0.754	7.150
1930	chr11	5385549	5387808	+	0	NA	intron (NM_001080924, intron 1 of 8)	L1_Mus3|LINE|L1	-4938	NM_001290501	407821	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	9.165	8.522	7.234	4.413	5.883	4.901	3.527	7.914	4.002	4.670	4.279	2.786	3.171	5.665	3.856	4.458	6.261	4.549	5.019	5.099	4.451	3.754	6.106	5.699	6.197
8930	chr2	160967911	160975551	+	0	NA	intron (NR_126509, intron 26 of 35)	intron (NR_126509, intron 26 of 35)	-59392	NM_182840	280635	Mm.330747	NM_182840	ENSMUSG00000050700	Emilin3	1110013O17Rik|EMILIN-3|EMILIN-5|EMILIN-T|Emilin5	elastin microfibril interfacer 3	protein-coding	nan	0.515	0.392	1.212	1.594	0.831	3.870	2.010	nan	nan	0.611	1.152	nan	nan	2.478	3.019	3.840	3.945	7.238	5.327	3.469	4.799	5.886	5.239	3.000
10385	chr4	114097903	114099190	+	0	NA	Intergenic	RMER4B|LTR|ERVK	-64838	NM_177669	230623	Mm.124482	NM_177669	ENSMUSG00000057977	Skint11	A630098G03Rik|Gm569	selection and upkeep of intraepithelial T cells 11	protein-coding	2.833	1.340	0.835	0.308	0.293	0.209	4.430	1.662	0.765	0.785	0.636	0.681	2.292	3.349	2.848	nan	1.432	1.048	1.076	1.303	1.080	0.725	1.185	0.549	2.114
12980	chr7	20253868	20255539	+	0	NA	Intergenic	B3|SINE|B2	-20875	NM_001167150	667094	Mm.484989	NM_001167150	ENSMUSG00000094149	Gm8453	EG667094|Vmn1r145	predicted gene 8453	protein-coding	4.128	5.689	3.089	3.803	2.751	1.963	5.450	7.621	2.594	3.481	2.241	1.328	3.592	6.580	4.026	4.429	4.279	3.557	1.449	2.053	1.443	2.467	1.529	1.534	4.747
11700	chr5	123844065	123848859	+	0	NA	Intergenic	Intergenic	19054	NM_030701	80885	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	7.951	14.767	5.122	10.091	4.276	2.099	4.061	5.876	5.402	8.170	4.341	2.677	4.264	7.338	6.248	6.684	4.107	6.667	nan	3.255	2.455	3.984	nan	2.939	8.122
9465	chr3	89117032	89120831	+	0	NA	Intergenic	Intergenic	-16964	NM_001253751	110196	Mm.39472	NM_134469	ENSMUSG00000059743	Fdps	6030492I17Rik|AI256750|Fdpsl1|mKIAA1293	farnesyl diphosphate synthetase	protein-coding	4.900	1.393	0.523	5.939	3.090	1.805	10.595	8.061	5.118	7.550	0.583	0.921	11.668	12.342	8.531	9.873	6.941	8.052	nan	0.493	0.742	1.814	0.919	1.111	9.087
13237	chr7	63319204	63322868	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-108510	NM_007390	11441	Mm.113464	NM_007390	ENSMUSG00000030525	Chrna7	Acra7|alpha7|nAchR	cholinergic receptor, nicotinic, alpha polypeptide 7	protein-coding	2.458	0.833	0.644	2.337	4.272	4.100	2.786	4.889	3.893	3.502	1.573	4.432	3.046	2.603	1.459	1.518	1.908	3.264	0.841	1.283	1.535	0.515	0.709	1.026	1.041
5851	chr16	18750828	18756031	+	0	NA	Intergenic	Intergenic	-23418	NM_013805	12741	Mm.22768	NM_013805	ENSMUSG00000041378	Cldn5	AI854493|MBEC1|Tmvcf	claudin 5	protein-coding	4.472	0.533	0.298	2.700	1.795	0.993	4.181	1.929	2.972	3.440	1.196	0.693	3.172	3.881	3.084	nan	3.554	3.637	0.637	0.999	0.401	0.613	0.498	0.533	5.957
14095	chr8	26362232	26369936	+	0	NA	Intergenic	B3|SINE|B2	207915	NM_199042	73754	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	7.721	nan	0.626	5.814	3.886	2.230	4.552	8.415	3.433	4.509	1.892	1.532	6.594	7.513	6.220	7.561	4.898	5.655	0.848	1.203	0.864	nan	1.052	1.009	7.623
12898	chr7	3642782	3646928	+	0	NA	promoter-TSS (NM_146176)	promoter-TSS (NM_146176)	-414	NM_146176	232791	Mm.358731	NM_146176	ENSMUSG00000035632	Cnot3	A930039N10Rik	CCR4-NOT transcription complex, subunit 3	protein-coding	8.380	11.011	3.162	8.186	3.908	2.041	9.257	10.340	4.082	7.721	6.359	2.656	8.941	10.308	10.133	10.123	7.503	7.424	3.815	2.856	2.033	4.663	3.430	2.623	13.491
923	chr1	180138889	180141350	+	0	NA	intron (NM_001346805, intron 25 of 34)	B4A|SINE|B4	53366	NM_001163290	67426	Mm.38330	NM_023341	ENSMUSG00000026489	Coq8a	4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451	coenzyme Q8A	protein-coding	6.681	0.656	0.723	2.179	2.692	1.960	2.976	2.834	2.726	2.900	1.108	0.657	6.571	4.637	3.789	5.117	6.092	5.074	0.891	0.663	0.260	0.455	0.800	0.450	3.374
8739	chr2	145500762	145502107	+	0	NA	intron (NM_053195, intron 3 of 16)	intron (NM_053195, intron 3 of 16)	53548	NM_001037929	627302	Mm.445953	NM_001037929		Gm14092	OTTMUSG00000015643	predicted gene 14092	protein-coding	10.434	2.510	0.566	10.564	3.886	1.278	11.059	8.199	3.794	8.658	4.651	2.319	5.601	4.833	9.502	8.869	4.066	8.527	5.844	2.677	1.785	5.423	4.182	3.363	18.747
2051	chr11	30110410	30112647	+	0	NA	intron (NM_175836, intron 28 of 34)	intron (NM_175836, intron 28 of 34)	-85495	NM_146016	237711	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding	2.847	1.158	0.901	4.285	4.103	2.365	1.876	2.469	3.246	2.058	1.240	1.805	2.448	2.253	2.647	2.665	1.751	3.559	0.909	0.492	0.547	0.892	0.558	0.245	1.443
14221	chr8	47977734	47979711	+	0	NA	intron (NM_133791, intron 1 of 22)	intron (NM_133791, intron 1 of 22)	11829	NM_133791	52357	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	4.924	1.929	0.529	2.754	0.804	0.330	1.273	1.919	2.797	2.222	2.096	1.740	2.512	2.343	2.537	2.789	1.652	2.803	1.007	0.809	0.674	2.520	0.221	0.389	3.168
12987	chr7	20362431	20365361	+	0	NA	Intergenic	L1_Mus1|LINE|L1	-4978	NR_030707	100042966	Mm.431911	NR_030707		Vmn1r-ps79	Gm652	vomeronasal 1 receptor, pseudogene 79	pseudo	3.036	0.556	0.354	2.522	2.535	1.249	3.597	3.677	2.168	2.671	0.811	0.589	2.676	5.505	3.655	3.956	2.799	4.450	2.675	2.180	1.528	5.227	1.708	1.064	6.832
5382	chr15	77627361	77642878	+	0	NA	exon (NM_001143686, exon 4 of 4)	exon (NM_001143686, exon 4 of 4)	8167	NM_001143686	328563	Mm.17957	NM_001143686	ENSMUSG00000091694	Apol11b	A330102K04Rik	apolipoprotein L 11b	protein-coding	8.708	nan	2.630	8.632	5.564	2.826	7.718	9.462	6.252	nan	nan	4.185	7.151	nan	8.809	7.182	5.072	8.330	3.570	1.926	1.493	nan	1.909	1.343	9.275
4968	chr14	120902809	120905490	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	-7045	NM_023579	70572	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5	importin 5	protein-coding	3.729	0.689	0.383	2.132	1.851	0.959	2.443	2.642	2.653	2.572	0.300	0.265	2.785	4.049	4.655	4.319	2.350	4.125	0.617	0.526	0.423	0.546	0.285	0.126	5.207
12278	chr6	58969022	58975405	+	0	NA	intron (NM_153574, intron 7 of 17)	intron (NM_153574, intron 7 of 17)	52289	NM_153574	58909	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	5.125	0.835	0.841	2.777	1.554	1.227	3.803	6.878	3.732	3.476	1.629	2.374	6.698	4.766	5.249	7.770	7.262	4.951	3.392	2.205	1.922	2.849	3.710	2.891	3.831
15264	chr9	70389554	70393539	+	0	NA	intron (NM_181072, intron 26 of 27)	intron (NM_181072, intron 26 of 27)	14207	NR_049200	100885839		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	6.530	7.250	2.575	7.023	2.610	2.332	5.237	4.825	4.303	7.196	4.204	3.357	5.466	5.843	6.651	7.264	4.519	7.140	nan	1.616	1.680	4.632	2.680	3.722	8.787
11568	chr5	112704197	112706927	+	0	NA	intron (NM_028901, intron 42 of 43)	intron (NM_028901, intron 42 of 43)	-87730	NR_040675	67360	Mm.59218	NR_040675	ENSMUSG00000098230	1700095B10Rik	-	RIKEN cDNA 1700095B10 gene	ncRNA	4.894	8.499	3.281	6.365	4.075	1.681	nan	4.079	3.257	6.572	4.473	2.707	2.951	5.483	4.182	5.150	3.888	4.009	nan	2.539	2.184	3.489	2.195	2.429	5.747
9080	chr2	174152626	174159712	+	0	NA	intron (NR_040530, intron 2 of 3)	intron (NR_040530, intron 2 of 3)	27749	NR_040530	100038374	Mm.127249	NR_040530	ENSMUSG00000074555	Gm10714	ENSMUSG00000074555	predicted gene 10714	ncRNA	5.530	8.081	3.318	6.630	6.130	4.301	5.570	5.369	3.781	9.375	3.918	2.839	4.576	7.413	6.038	8.399	7.280	6.046	6.612	4.074	3.846	4.854	5.018	6.273	10.220
8034	chr2	26403501	26413343	+	0	NA	exon (NM_033134, exon 1 of 10)	exon (NM_033134, exon 1 of 10)	705	NM_001290437	64436	Mm.330070	NM_033134	ENSMUSG00000026925	Inpp5e	1200002L24Rik|72kDa|mKIAA0123	inositol polyphosphate-5-phosphatase E	protein-coding	3.833	1.921	0.535	5.234	1.432	0.676	2.315	3.530	nan	3.317	10.037	2.101	3.102	3.507	3.922	5.411	2.307	5.286	0.651	0.767	0.599	1.260	0.546	0.297	6.981
15142	chr9	59527535	59566192	+	0	NA	intron (NM_010421, intron 1 of 13)	B3|SINE|B2	7323	NM_010421	15211	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	5.579	0.659	0.436	5.494	3.351	2.433	5.021	nan	6.223	7.496	4.177	1.709	6.631	8.636	4.469	7.015	4.298	9.006	1.818	1.592	1.490	2.188	2.841	2.275	7.815
10502	chr4	124385719	124388025	+	0	NA	Intergenic	MTC|LTR|ERVL-MaLR	99087	NR_040774	78460	Mm.452060	NR_040774		1700057H15Rik	-	RIKEN cDNA 1700057H15 gene	ncRNA	5.942	5.951	2.582	5.319	3.390	1.814	4.761	6.459	3.136	4.830	6.125	3.192	4.344	6.417	nan	4.925	2.228	4.346	3.444	2.380	3.531	5.374	2.308	2.579	6.807
6089	chr16	45362816	45367738	+	0	NA	Intergenic	Intergenic	43776	NM_010818	17470	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	6.585	1.851	1.416	4.130	3.097	1.652	3.387	3.763	3.088	3.468	2.493	0.834	3.235	2.718	2.446	3.619	3.481	3.657	1.236	1.583	0.674	0.619	0.691	0.637	3.205
2404	chr11	70407542	70409253	+	0	NA	intron (NM_029231, intron 1 of 16)	intron (NM_029231, intron 1 of 16)	1634	NM_029231	75273	Mm.340601	NM_029231	ENSMUSG00000018921	Pelp1	4930563C04Rik|MNAR	proline, glutamic acid and leucine rich protein 1	protein-coding	8.316	6.236	1.476	7.390	3.714	0.903	2.202	4.248	4.360	5.533	3.176	2.736	3.138	4.148	4.423	4.476	2.807	5.898	0.891	1.601	0.444	0.686	nan	0.340	4.670
14975	chr9	40768980	40772997	+	0	NA	intron (NM_133733, intron 2 of 6)	ID_B1|SINE|B4	-30285	NM_031165	15481	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.341	0.675	0.550	0.851	0.261	0.120	0.108	0.260	0.368	0.691	0.370	0.379	0.125	0.258	0.405	0.552	nan	0.376	9.068	3.825	2.761	2.374	10.708	9.197	0.442
14841	chr9	3015171	3016237	+	0	NA	Intergenic	GSAT_MM|Satellite|Satellite	23039	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	nan	nan	32.194	16.263	20.036	23.991	16.181	nan	16.900	12.669	14.653	22.216	12.067	8.603	6.396	nan	16.621	nan	nan	22.037	43.546	6.764	19.765	33.232	nan
2611	chr11	88001068	88002843	+	0	NA	Intergenic	Intergenic	-3657	NM_001168471	68097	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	1.687	5.286	1.839	4.568	1.549	1.144	1.772	1.683	1.758	1.732	2.751	1.662	0.807	1.778	1.917	1.499	1.458	1.595	2.470	2.749	3.532	5.109	1.456	1.666	nan
4425	chr13	113552117	113555826	+	0	NA	Intergenic	ORR1B2-int|LTR|ERVL-MaLR	-51127	NR_045501	70917	Mm.491036	NR_045501		4921509O07Rik	-	RIKEN cDNA 4921509O07 gene	ncRNA	2.645	2.030	0.960	5.607	1.919	1.263	0.473	0.772	1.268	1.808	0.898	0.857	0.590	1.931	1.653	1.597	0.711	3.085	0.546	0.417	0.144	0.716	0.230	0.278	nan
65	chr1	31003437	31009220	+	0	NA	Intergenic	IAPEz-int|LTR|ERVK	-56573	NM_011200	19243	Mm.491181	NM_011200	ENSMUSG00000026064	Ptp4a1	AA415290|AU019864|C130021B01|Prl-1	protein tyrosine phosphatase 4a1	protein-coding	11.524	nan	2.472	9.252	5.513	3.679	5.750	8.591	8.582	12.882	4.296	5.185	11.027	10.254	8.583	11.995	9.952	11.978	4.020	2.570	1.961	5.689	2.254	2.718	8.724
7343	chr18	65959744	65963529	+	0	NA	intron (NM_145493, intron 2 of 2)	(TG)n|Simple_repeat|Simple_repeat	8542	NM_145493	225644	Mm.192285	NM_145493	ENSMUSG00000024519	Cplx4	A930004D23Rik|CPXIV|Gm957	complexin 4	protein-coding	8.614	14.329	9.270	6.001	5.959	4.052	7.076	7.659	5.723	6.266	8.033	3.842	8.255	5.249	6.450	8.248	9.358	6.111	3.587	3.799	3.382	2.657	4.494	3.875	8.314
6887	chr17	80627886	80629980	+	0	NA	intron (NM_001290345, intron 15 of 33)	(TA)n|Simple_repeat|Simple_repeat	-65099	NM_001033443	381113	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	0.455	1.424	1.608	0.692	0.771	0.531	nan	nan	nan	0.612	0.340	0.477	0.290	0.371	0.926	nan	0.857	0.984	5.349	4.769	6.615	4.910	10.171	13.077	1.255
5249	chr15	61949900	61953604	+	0	NA	Intergenic	RMER15|LTR|ERVL	-33589	NM_001177354	17869	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	3.817	2.407	1.125	nan	1.809	0.506	7.525	5.753	nan	nan	1.463	2.288	2.792	4.174	4.541	nan	2.588	2.227	1.280	0.734	0.364	1.455	0.820	0.256	2.280
12723	chr6	127716678	127720436	+	0	NA	intron (NM_201371, intron 4 of 9)	MIR|SINE|MIR	50602	NM_201371	381813	Mm.39750	NM_201371	ENSMUSG00000030350	Prmt8	Hrmt1l3|Hrmt1l4	protein arginine N-methyltransferase 8	protein-coding	0.952	nan	0.049	4.069	1.332	0.709	0.957	nan	3.013	11.911	0.461	0.294	2.147	7.238	3.176	2.528	2.427	0.784	0.295	0.781	0.391	0.937	0.187	0.217	1.318
15273	chr9	71437794	71440608	+	0	NA	Intergenic	Intergenic	45757	NM_001164793	28015	Mm.21094	NM_178602	ENSMUSG00000032199	Polr2m	AA407243|AA408799|AI303746|AW553238|D9Wsu138e|Grinl1a|mKIAA4185	polymerase (RNA) II (DNA directed) polypeptide M	protein-coding	3.365	4.393	1.309	5.187	1.259	0.459	2.001	3.073	3.113	2.696	2.286	2.315	2.640	3.911	nan	3.167	1.494	5.309	4.184	1.955	1.419	4.842	2.513	1.544	3.332
15115	chr9	57272441	57278940	+	0	NA	Intergenic	Intergenic	-13091	NM_028820	74211	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	6.104	2.898	1.509	2.601	2.032	1.191	3.533	5.523	4.979	4.525	4.250	3.744	2.603	3.876	4.503	5.376	3.432	5.172	3.421	1.984	1.680	3.022	1.529	1.278	6.904
11481	chr5	100801634	100802950	+	0	NA	intron (NM_026826, intron 3 of 5)	intron (NM_026826, intron 3 of 5)	3533	NM_026826	68735	Mm.25585	NM_026826	ENSMUSG00000016833	Mrps18c	1110037D14Rik	mitochondrial ribosomal protein S18C	protein-coding	1.696	0.713	0.571	1.211	0.765	0.590	1.660	1.197	0.716	1.442	0.558	0.323	1.128	2.993	1.383	1.375	1.275	1.485	0.761	0.378	0.093	0.533	0.464	0.485	1.364
9358	chr3	64008643	64010190	+	0	NA	intron (NM_001033300, intron 12 of 15)	L1Md_F2|LINE|L1	33273	NM_001033300	229363	Mm.331051	NM_001033300	ENSMUSG00000027823	Gmps	670032|AA591640|AI047208|Gm9479	guanine monophosphate synthetase	protein-coding	2.863	0.892	0.528	0.648	1.494	1.213	7.528	3.396	0.816	1.384	0.252	0.656	5.154	3.584	3.562	nan	2.787	2.842	0.363	0.223	0.079	0.149	0.115	0.249	1.720
12255	chr6	54421096	54424739	+	0	NA	intron (NR_033635, intron 1 of 13)	intron (NR_033635, intron 1 of 13)	7304	NR_033635	100042056	Mm.448157	NM_198118	ENSMUSG00000073067	9130019P16Rik	6430501H15Rik|OTTMUSG00000023151	RIKEN cDNA 9130019P16 gene	ncRNA	7.861	0.631	0.393	3.105	4.127	1.988	6.157	3.742	2.121	3.127	0.548	0.238	3.213	5.761	1.641	nan	6.313	4.215	nan	0.879	0.870	0.792	0.811	0.903	7.413
6093	chr16	45397572	45403881	+	0	NA	intron (NM_010818, intron 1 of 5)	intron (NM_010818, intron 1 of 5)	8327	NM_010818	17470	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	10.610	2.302	0.812	6.992	6.258	3.145	7.994	8.831	6.897	8.893	5.055	1.341	12.114	11.523	9.193	11.033	8.337	11.971	1.408	1.153	0.656	1.186	1.256	0.992	9.385
2742	chr11	98304975	98311778	+	0	NA	Intergenic	Intergenic	21269	NM_010895	18013	Mm.4814	NM_010895	ENSMUSG00000038255	Neurod2	Ndrf|bHLHa1	neurogenic differentiation 2	protein-coding	6.915	nan	0.798	4.508	4.711	3.193	9.518	9.698	4.854	6.637	3.881	2.664	7.865	9.387	7.269	8.164	6.151	6.111	6.678	nan	4.750	8.512	7.022	nan	8.334
5909	chr16	22966833	22968722	+	0	NA	Intergenic	MYSERV-int|LTR|ERVK	16705	NM_053176	94175	Mm.358794	NM_053176	ENSMUSG00000022877	Hrg	AI265597|AW413091|D16jh2|D18020|Hprg|Hrgp	histidine-rich glycoprotein	protein-coding	2.687	0.359	0.174	0.795	0.880	0.673	3.109	5.127	2.557	2.487	1.279	0.880	5.728	4.602	5.342	4.345	3.536	4.699	0.878	0.621	0.324	0.857	0.354	0.232	2.034
14524	chr8	107862150	107873438	+	0	NA	Intergenic	Intergenic	-279312	NM_010817	17463	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	10.434	3.235	1.329	8.695	5.856	3.440	9.466	14.210	6.872	9.020	5.556	4.054	10.364	11.902	10.297	12.904	10.253	9.388	2.035	2.733	2.410	nan	2.121	1.540	13.534
10017	chr4	43406121	43416024	+	0	NA	intron (NM_199057, intron 1 of 11)	L1MB7|LINE|L1	4570	NM_199057	100213	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	2.044	nan	0.491	10.800	4.593	2.211	6.054	4.722	1.982	1.808	0.875	0.667	5.211	6.694	7.501	5.780	0.853	nan	0.899	0.741	0.601	nan	0.478	0.436	1.888
5528	chr15	85440014	85446863	+	0	NA	intron (NM_016843, intron 10 of 11)	intron (NM_016843, intron 10 of 11)	59789	NM_001256072	328577	Mm.212960	NM_001256072	ENSMUSG00000096607	7530416G11Rik	-	RIKEN cDNA 7530416G11 gene	protein-coding	8.112	1.938	0.484	nan	2.896	1.404	nan	13.887	nan	7.846	7.428	3.328	10.519	12.392	10.725	9.725	nan	nan	nan	3.760	2.997	9.133	4.870	3.772	13.155
1199	chr10	26574417	26576939	+	0	NA	Intergenic	Intergenic	98973	NR_033633	667572	Mm.482728	NR_033633	ENSMUSG00000098179	Gm8709	EG667572	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	6.717	0.987	0.657	2.176	2.547	1.105	5.396	7.575	4.602	5.492	1.547	2.013	8.400	7.160	6.309	5.956	6.139	4.156	0.633	0.427	0.292	0.602	0.548	0.240	5.112
2084	chr11	34646693	34647834	+	0	NA	intron (NM_033374, intron 22 of 51)	intron (NM_033374, intron 22 of 51)	136642	NM_033374	94176	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	6.845	9.704	5.134	6.234	3.645	1.326	4.080	4.765	5.431	5.091	4.896	4.263	3.711	4.218	6.006	7.413	4.375	6.864	3.939	3.837	1.298	3.769	3.479	2.563	7.555
2473	chr11	75436213	75438647	+	0	NA	exon (NM_008878, exon 5 of 10)	exon (NM_008878, exon 5 of 10)	2071	NM_008878	18816	Mm.279733	NM_008878	ENSMUSG00000038224	Serpinf2	AI747498|Pli|Serpimf2	serine (or cysteine) peptidase inhibitor, clade F, member 2	protein-coding	4.536	10.013	4.256	6.176	4.185	2.792	3.688	3.363	4.057	4.058	3.171	2.323	3.248	6.109	4.663	4.960	3.849	5.622	1.203	1.620	nan	1.204	0.744	0.452	4.460
10875	chr4	147523511	147526739	+	0	NA	Intergenic	Intergenic	-28152	NM_001014397	433804	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154|OTTMUSG00000010673	zinc finger protein 985	protein-coding	8.917	nan	2.831	8.927	8.088	7.858	7.106	5.801	5.507	8.032	2.798	2.953	8.019	10.252	6.655	6.609	3.546	7.510	2.761	1.530	2.886	3.123	3.882	7.046	10.619
656	chr1	136137262	136141870	+	0	NA	intron (NM_001039472, intron 1 of 34)	RMER10B|LTR|ERVL	8165	NM_001039472	16565	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	4.094	1.156	0.527	nan	1.585	0.695	3.764	4.241	1.970	2.418	0.378	0.411	3.650	4.218	3.331	7.173	4.443	4.066	1.023	0.796	0.725	2.263	0.682	0.496	4.945
13128	chr7	35267792	35271197	+	0	NA	Intergenic	Intergenic	48946	NM_026181	67471	Mm.358705	NM_026181	ENSMUSG00000063808	Gpatch1	1300003A17Rik|ECGP|Gpatc1	G patch domain containing 1	protein-coding	3.063	0.820	0.971	3.124	3.906	1.981	4.836	2.132	2.376	2.353	0.462	0.573	5.149	4.295	4.377	5.254	6.019	3.544	0.878	0.786	0.634	0.178	0.656	0.567	4.143
13195	chr7	52931649	52939045	+	0	NA	Intergenic	MTEb|LTR|ERVL-MaLR	-919631	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	7.476	6.213	2.556	5.878	5.464	4.576	6.980	10.338	6.759	8.220	3.581	5.623	8.954	10.158	7.960	9.053	5.314	9.038	5.895	3.297	3.058	6.204	3.188	2.938	9.735
15552	chr9	116149514	116153289	+	0	NA	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	23962	NM_029575	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	4.133	3.637	2.643	3.197	3.771	2.621	1.806	2.510	3.374	3.507	1.725	1.408	2.304	5.526	3.192	3.768	2.201	6.104	0.679	1.479	1.257	1.013	nan	0.849	6.285
2921	chr11	107277730	107281983	+	0	NA	intron (NM_145823, intron 5 of 9)	intron (NM_145823, intron 5 of 9)	-90475	NM_001161329	68979	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	3.651	8.398	3.756	3.877	2.390	1.977	2.216	4.798	nan	2.829	5.260	4.214	2.284	3.059	2.539	2.612	1.543	4.045	1.910	2.588	2.152	nan	1.265	1.142	3.472
4726	chr14	60146950	60160314	+	0	NA	Intergenic	Intergenic	-66798	NM_015803	50769	Mm.319599	NM_015803	ENSMUSG00000021983	Atp8a2	AI415030|Atpc1b|agil|wl	ATPase, aminophospholipid transporter-like, class I, type 8A, member 2	protein-coding	3.731	nan	1.147	1.596	1.047	0.452	3.522	nan	3.299	3.479	1.271	1.974	4.707	4.906	3.765	4.252	3.337	3.499	1.876	0.944	0.479	1.244	2.512	1.621	3.131
3468	chr12	78060831	78063207	+	0	NA	Intergenic	Intergenic	-164636	NM_172952	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	9.058	12.981	7.414	7.284	5.154	2.786	4.904	4.936	3.505	8.034	5.082	2.958	5.805	8.657	5.966	nan	6.312	6.616	2.572	2.524	1.872	2.557	2.188	1.969	11.389
15124	chr9	57513922	57515191	+	0	NA	Intergenic	Intergenic	-6676	NM_007747	12858	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	1.310	1.152	0.540	2.809	1.684	1.045	1.082	3.442	1.742	2.244	0.365	0.498	0.769	2.652	1.292	1.862	1.346	2.137	3.341	2.817	3.338	3.004	3.686	3.431	1.863
10519	chr4	125831988	125834226	+	0	NA	Intergenic	Charlie7|DNA|hAT-Charlie	89203	NR_015560	72395	Mm.112888	NR_015560	ENSMUSG00000085562	2610028E06Rik	BB043107	RIKEN cDNA 2610028E06 gene	ncRNA	4.827	1.298	0.742	3.668	2.507	2.286	4.009	3.775	3.178	3.289	1.355	1.200	2.860	3.343	nan	3.547	2.213	3.322	4.482	7.246	6.895	7.034	8.882	6.780	3.732
435	chr1	92299413	92302811	+	0	NA	Intergenic	Intergenic	-120771	NM_207225	208727	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	1.369	0.487	0.268	1.277	0.952	0.216	0.616	0.357	0.632	0.821	0.582	0.410	0.326	0.418	0.419	0.834	0.560	0.939	3.417	3.782	2.850	nan	8.308	7.477	0.684
10652	chr4	133226213	133232208	+	0	NA	Intergenic	ORR1D1|LTR|ERVL-MaLR	8401	NM_027152	69655	Mm.285685	NM_027152	ENSMUSG00000028865	Cd164l2	2310047N01Rik	CD164 sialomucin-like 2	protein-coding	8.665	10.854	4.478	9.361	4.815	3.340	6.987	7.401	nan	8.970	5.934	3.410	6.727	9.595	8.435	9.517	5.793	7.467	4.955	3.741	3.238	5.889	nan	4.713	11.172
9321	chr3	55491333	55493852	+	0	NA	intron (NM_019978, intron 11 of 16)	intron (NM_019978, intron 11 of 16)	30834	NM_001195540	13175	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.994	1.185	0.680	nan	0.247	0.143	0.631	0.563	0.529	0.857	0.596	0.871	0.493	0.813	nan	1.268	0.722	nan	3.654	1.839	0.623	3.708	2.154	1.026	0.650
3195	chr12	15817636	15825089	+	0	NA	Intergenic	Intergenic	-4577	NM_144551	217410	Mm.491136	NM_144551	ENSMUSG00000020601	Trib2	AW319517|TRB-2|TRB2	tribbles pseudokinase 2	protein-coding	7.579	12.325	4.187	6.985	2.908	1.313	9.872	6.626	4.922	6.335	6.035	6.533	4.396	5.097	7.717	9.205	7.668	5.857	4.544	2.597	1.963	6.486	2.337	1.879	11.137
8903	chr2	158211558	158213009	+	0	NA	intron (NM_001131021, intron 5 of 15)	intron (NM_001131021, intron 5 of 15)	16941	NM_001131021	228846	Mm.187574	NM_177657	ENSMUSG00000037813	D630003M21Rik	-	RIKEN cDNA D630003M21 gene	protein-coding	1.985	0.584	0.421	1.586	0.986	0.270	1.515	2.826	nan	2.263	0.564	0.493	nan	4.067	2.312	3.473	2.879	1.560	nan	0.566	0.202	0.499	0.559	0.392	2.510
1482	chr10	79510768	79518854	+	0	NA	Intergenic	L1_Mus4|LINE|L1	16279	NR_105874	102465548		NR_105874	ENSMUSG00000098414	Mir6909	Gm27727|mmu-mir-6909	microRNA 6909	ncRNA	9.870	4.290	1.441	9.123	7.151	4.905	7.036	7.515	6.032	9.962	5.737	3.041	6.036	12.202	7.751	9.123	6.366	8.391	nan	2.547	2.620	3.117	2.552	2.565	12.083
885	chr1	173348103	173352017	+	0	NA	intron (NM_053199, intron 1 of 8)	intron (NM_053199, intron 1 of 8)	-16557	NM_010045	13349	Mm.6393	NM_010045	ENSMUSG00000037872	Ackr1	AA162249|CCBP1|CD234|Darc|Dfy|ESTM35|FY|GPD	atypical chemokine receptor 1 (Duffy blood group)	protein-coding	1.446	0.868	0.432	0.784	0.910	0.344	1.635	2.098	0.629	0.868	0.520	0.255	1.591	nan	1.928	3.197	1.625	1.266	2.998	1.847	1.375	4.102	1.218	0.868	1.342
1412	chr10	70164115	70167158	+	0	NA	intron (NM_001111121, intron 3 of 8)	intron (NM_001111121, intron 3 of 8)	-39028	NM_001304739	69563	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Mln	myoregulin	protein-coding	0.708	0.613	0.384	0.413	0.749	0.606	1.048	0.556	0.481	0.690	7.794	0.710	0.404	1.447	0.655	0.355	0.520	nan	1.324	0.685	0.604	0.406	0.823	0.672	0.461
14527	chr8	107992815	108005929	+	0	NA	Intergenic	Intergenic	-410890	NM_010817	17463	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	3.070	0.998	0.349	4.288	2.118	0.994	1.748	2.950	2.476	3.378	0.901	0.766	3.121	4.299	4.549	6.873	3.214	3.913	1.116	1.056	0.640	nan	1.320	0.886	6.725
11985	chr5	149900244	149902117	+	0	NA	Intergenic	Intergenic	53433	NR_045758	70969	Mm.78499	NR_045758	ENSMUSG00000107214	4930500F04Rik	4931407C17Rik	RIKEN cDNA 4930500F04 gene	ncRNA	1.393	5.443	4.832	nan	0.738	0.546	1.284	0.475	nan	1.344	0.530	0.282	1.766	1.511	1.952	1.184	0.950	2.281	0.834	0.961	1.137	0.699	0.907	0.509	nan
5075	chr15	25772120	25775642	+	0	NA	intron (NM_019472, intron 19 of 40)	intron (NM_019472, intron 19 of 40)	-69417	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	6.826	10.187	3.250	5.361	2.385	1.214	5.838	9.292	2.827	6.082	3.550	1.993	7.240	6.380	6.220	6.626	5.507	5.717	3.328	2.050	2.332	4.198	2.491	3.281	7.676
228	chr1	60664197	60669413	+	0	NA	Intergenic	Intergenic	-79583	NM_007642	12487	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	8.050	0.848	0.764	5.288	5.008	3.182	5.359	6.682	6.370	6.482	5.534	4.118	9.126	8.401	6.866	10.718	6.122	8.462	3.810	1.871	1.778	4.506	1.828	1.448	6.567
13951	chr7	151925419	151943388	+	0	NA	Intergenic	Intergenic	6619568	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	4.303	nan	0.327	nan	4.447	2.189	5.972	5.984	nan	5.990	1.097	1.630	8.280	9.540	7.851	8.408	4.627	8.561	0.482	0.510	0.313	0.503	nan	0.268	nan
10684	chr4	134401458	134404273	+	0	NA	promoter-TSS (NM_001285877)	promoter-TSS (NM_001285877)	-47	NM_001285874	100163	Mm.22116	NM_133880	ENSMUSG00000037366	Pafah2	2310074E22Rik|AI507170	platelet-activating factor acetylhydrolase 2	protein-coding	3.802	0.651	0.701	2.736	2.677	2.215	3.379	3.656	3.528	3.374	1.855	1.888	2.938	4.154	3.108	3.478	2.728	nan	2.760	2.286	2.161	3.612	nan	1.737	2.863
3783	chr12	114384524	114388002	+	0	NA	Intergenic	Intergenic	83203	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	5.410	5.729	2.283	7.839	3.138	2.035	3.929	4.018	2.749	3.727	2.173	1.222	2.758	4.905	4.425	4.393	2.541	4.764	2.269	4.097	3.200	7.745	3.123	2.535	6.339
7772	chr19	41643514	41645998	+	0	NA	intron (NM_015748, intron 13 of 36)	intron (NM_015748, intron 13 of 36)	56105	NR_106166	102465884		NR_106166	ENSMUSG00000098286	Mir8091	Gm27575|mmu-mir-8091	microRNA 8091	ncRNA	3.422	1.012	1.028	2.061	1.419	0.874	4.043	5.441	1.912	2.392	0.830	0.522	4.335	4.941	2.529	2.305	6.246	2.953	0.601	0.657	0.871	0.686	0.905	0.919	1.619
10824	chr4	141217750	141222879	+	0	NA	TTS (NM_001081174)	TTS (NM_001081174)	6358	NM_001081174	76166	Mm.271064	NM_001081174	ENSMUSG00000073733	Rsg1	6330545A04Rik|Gm723	REM2 and RAB-like small GTPase 1	protein-coding	5.602	4.576	1.993	6.485	6.506	5.931	3.783	3.949	nan	6.644	2.615	1.811	3.247	6.110	4.154	4.916	3.451	nan	3.261	2.530	3.458	4.356	4.385	5.317	7.439
829	chr1	166375111	166378011	+	0	NA	Intergenic	RMER6A|LTR|ERVK	-2606	NM_030245	27878	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	3.559	0.695	0.312	2.215	5.898	3.457	2.712	2.945	2.771	3.702	0.976	0.614	4.104	4.572	nan	4.789	3.171	3.603	2.474	1.235	0.940	nan	nan	2.057	nan
11607	chr5	115937980	115943485	+	0	NA	intron (NM_007708, intron 17 of 46)	intron (NM_007708, intron 17 of 46)	83696	NM_031869	19079	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	6.580	7.455	3.523	6.442	6.864	4.923	4.966	6.883	4.893	5.631	5.024	2.992	5.528	8.686	6.102	6.641	5.325	5.610	nan	nan	2.317	3.998	nan	3.378	5.558
9502	chr3	93323634	93327630	+	0	NA	exon (NM_133698, exon 3 of 4)	exon (NM_133698, exon 3 of 4)	5883	NM_133698	68723	Mm.208047	NM_133698	ENSMUSG00000041991	Hrnr	1110033K19Rik|A530063N20Rik|S100a18	hornerin	protein-coding	5.543	3.249	1.331	3.902	4.001	2.033	4.549	7.607	3.823	4.226	11.523	2.584	5.056	5.756	4.420	8.271	7.021	6.919	0.755	0.798	1.074	0.803	0.452	0.409	5.071
12869	chr6	146958136	146961122	+	0	NA	intron (NM_026221, intron 2 of 26)	intron (NM_026221, intron 2 of 26)	-5208	NM_028509	73344	Mm.391543	NM_028509	ENSMUSG00000040163	1700034J05Rik	-	RIKEN cDNA 1700034J05 gene	protein-coding	4.293	7.952	3.895	nan	3.088	1.543	3.859	4.761	2.625	4.411	2.153	1.710	nan	5.341	4.065	nan	5.447	5.229	1.254	nan	0.811	nan	0.372	0.384	4.492
15525	chr9	110581926	110594774	+	0	NA	intron (NM_001081340, intron 12 of 20)	intron (NM_001081340, intron 12 of 20)	36043	NM_026012	67169	Mm.46680	NM_026012	ENSMUSG00000032491	Nradd	2610311B09Rik|BB104149|NRDD|NRH2|PLAIDD	neurotrophin receptor associated death domain	protein-coding	6.088	2.455	0.998	4.474	4.722	2.702	5.861	7.000	nan	nan	8.286	4.060	4.779	7.427	4.829	nan	3.124	nan	1.677	1.379	1.413	1.418	1.639	1.375	nan
1521	chr10	80839546	80841965	+	0	NA	intron (NM_001013758, intron 1 of 1)	intron (NM_001013758, intron 1 of 1)	3284	NM_001013758	237403	Mm.40213	NM_001013758	ENSMUSG00000051067	Lingo3	AI851712|LERN2	leucine rich repeat and Ig domain containing 3	protein-coding	6.162	8.891	4.257	4.776	4.602	2.682	4.201	6.199	2.737	6.368	5.043	2.337	3.241	5.278	nan	6.348	4.928	4.525	nan	4.929	2.158	4.598	4.940	4.656	9.405
5029	chr15	8058426	8060198	+	0	NA	intron (NM_001081402, intron 5 of 17)	L1MB7|LINE|L1	39897	NM_001081402	545085	Mm.321312	NM_198413	ENSMUSG00000039828	Wdr70	4833422F06Rik	WD repeat domain 70	protein-coding	6.523	6.566	2.905	4.166	5.266	2.391	5.785	7.937	3.052	3.541	3.637	2.326	5.951	6.224	5.083	5.434	7.202	5.164	3.399	2.194	1.914	3.783	3.210	3.149	5.919
1862	chr10	127845941	127849816	+	0	NA	Intergenic	Intergenic	-2050	NM_147222	216453	Mm.222953	NM_147222	ENSMUSG00000054052	Rdh19	RDH-S|RDH-S2|Rdhs	retinol dehydrogenase 19	protein-coding	13.067	15.012	8.072	9.516	8.781	5.787	9.514	9.247	5.361	8.489	6.609	4.275	7.644	10.727	8.699	9.822	9.519	7.682	3.707	5.255	5.822	5.981	nan	5.555	14.281
2352	chr11	68714671	68716210	+	0	NA	intron (NM_175260, intron 2 of 40)	B1_Mur2|SINE|Alu	23525	NM_175260	77579	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	7.435	11.462	3.273	7.623	4.966	3.205	5.295	5.857	4.517	6.796	5.706	4.700	4.381	6.220	7.632	8.142	5.919	7.427	4.046	3.388	2.126	5.023	2.937	2.046	9.289
12651	chr6	119326340	119328961	+	0	NA	intron (NM_172492, intron 1 of 4)	intron (NM_172492, intron 1 of 4)	1554	NM_001172207	211187	Mm.121498	NM_172492	ENSMUSG00000055003	Lrtm2	A230084J22|AI841794	leucine-rich repeats and transmembrane domains 2	protein-coding	5.540	1.515	0.620	3.460	4.691	3.310	7.216	9.066	3.919	2.592	2.487	2.569	5.253	7.663	4.464	4.565	6.263	4.393	1.351	1.669	1.029	1.436	nan	1.231	2.696
5420	chr15	79121440	79124298	+	0	NA	exon (NM_177461, exon 6 of 16)	exon (NM_177461, exon 6 of 16)	13886	NM_177461	27008	Mm.196480	NM_177461	ENSMUSG00000033039	Micall1	AI448246|D15Mit260|D15N2e|EST573322|EST820961|MIRab13|mKIAA1668	microtubule associated monooxygenase, calponin and LIM domain containing -like 1	protein-coding	nan	nan	0.716	nan	0.743	0.570	nan	1.380	0.795	nan	nan	1.525	0.531	nan	0.775	0.715	nan	0.903	4.286	3.006	5.413	nan	5.008	5.897	0.761
13543	chr7	112759185	112773183	+	0	NA	intron (NM_009346, intron 2 of 12)	L2b|LINE|L2	6800	NM_001166585	21676	Mm.24685	NM_009346	ENSMUSG00000055320	Tead1	2610024B07Rik|B230114H05Rik|Gtrgeo5|TEAD-1|TEF-1|Tcf13|mTEF-1	TEA domain family member 1	protein-coding	7.336	0.719	0.458	3.872	4.717	2.272	6.504	6.906	3.344	5.837	1.835	1.155	8.076	10.081	5.549	6.421	5.838	6.606	nan	1.106	0.475	0.740	1.131	0.722	8.684
9383	chr3	75739467	75743378	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-85691	NR_040539	69193	Mm.374088	NR_040539	ENSMUSG00000099370	Platr10	2410007B07Rik	pluripotency associated transcript 10	ncRNA	0.576	0.630	0.462	0.590	0.502	0.094	0.890	0.610	0.997	0.698	5.794	2.323	1.026	1.038	0.609	0.700	0.787	0.888	0.584	0.768	0.501	0.335	0.544	0.440	0.497
9047	chr2	168381056	168382959	+	0	NA	Intergenic	Intergenic	-112676	NM_001081134	241794	Mm.425102	NM_001081134	ENSMUSG00000074575	Kcng1	AW536275|OTTMUSG00000016048	potassium voltage-gated channel, subfamily G, member 1	protein-coding	1.923	12.115	7.181	1.874	1.085	0.496	1.116	2.071	2.092	1.295	1.073	0.819	0.826	nan	0.843	1.382	1.240	2.042	nan	2.019	1.586	1.423	3.757	2.918	2.089
1082	chr10	7534381	7540247	+	0	NA	Intergenic	Intergenic	-52486	NM_172784	237253	Mm.206759	NM_172784	ENSMUSG00000019796	Lrp11	1700034J19Rik|6330533B21|9830160H19Rik	low density lipoprotein receptor-related protein 11	protein-coding	1.061	8.175	5.618	0.756	0.503	0.328	0.465	0.647	0.659	0.547	0.498	0.384	0.310	0.504	0.722	0.819	0.803	0.687	0.790	0.820	0.443	0.555	0.520	0.423	0.736
121	chr1	39294231	39295488	+	0	NA	intron (NM_008719, intron 4 of 20)	(TAAA)n|Simple_repeat|Simple_repeat	-72992	NM_053257	114641	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	6.404	0.549	0.581	2.371	0.547	0.326	7.745	5.669	3.356	3.599	4.472	3.998	8.598	4.689	5.554	15.012	8.354	6.523	0.588	0.774	0.283	1.099	0.594	0.449	6.432
1066	chr1	196483831	196489224	+	0	NA	Intergenic	Intergenic	-1309812	NM_007758	12902	Mm.235387	NM_007758	ENSMUSG00000026616	Cr2	C3DR|CD21|CD35|Cr-1|Cr-2|Cr1	complement receptor 2	protein-coding	5.904	1.101	0.465	3.395	2.737	1.847	5.099	5.501	4.280	4.210	3.363	2.822	6.258	4.873	4.138	nan	3.518	5.817	1.972	1.523	0.689	2.300	nan	0.929	nan
9179	chr3	27087035	27089844	+	0	NA	Intergenic	Intergenic	65415	NM_007900	13605	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536|mKIAA4037	ect2 oncogene	protein-coding	5.534	1.370	1.180	3.777	2.673	1.325	2.274	1.747	3.060	2.725	1.654	1.289	3.394	4.836	2.984	4.151	2.378	3.794	2.638	2.215	0.886	5.084	2.466	0.995	2.651
487	chr1	107071961	107076871	+	0	NA	Intergenic	L1Md_F2|LINE|L1	9064	NM_201376	394252	Mm.352392	NM_201376	ENSMUSG00000058017	Serpinb3d	Serpinb3l1	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 3D	protein-coding	1.475	nan	0.330	1.231	0.408	0.199	2.706	5.299	2.845	1.864	0.609	0.290	5.576	2.813	3.037	6.624	3.758	3.305	1.254	0.456	0.419	0.977	0.834	0.446	0.677
14681	chr8	122636348	122638876	+	0	NA	intron (NM_177289, intron 6 of 10)	intron (NM_177289, intron 6 of 10)	-14877	NM_001007462	382035	Mm.25449	NM_001007462	ENSMUSG00000069867	Pabpn1l	Gm1108|Pabpnl1|ePABP2	poly(A)binding protein nuclear 1-like	protein-coding	7.198	4.780	1.686	9.760	3.170	1.781	3.783	7.747	4.199	8.364	3.586	1.896	5.975	8.048	6.315	7.521	4.009	6.548	3.845	1.375	2.296	6.586	2.486	2.649	10.127
3175	chr12	8853491	8857812	+	0	NA	Intergenic	Intergenic	-65656	NM_008640	17775	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	5.077	1.012	0.570	2.755	5.626	3.167	7.174	3.026	5.083	6.663	4.036	2.714	7.541	7.754	4.379	5.906	4.437	5.610	0.567	1.017	0.596	0.431	0.856	0.620	4.823
10514	chr4	125785708	125791126	+	0	NA	Intergenic	Intergenic	133893	NR_015560	72395	Mm.112888	NR_015560	ENSMUSG00000085562	2610028E06Rik	BB043107	RIKEN cDNA 2610028E06 gene	ncRNA	7.764	8.737	2.755	9.932	5.426	4.917	8.745	7.755	7.627	8.034	6.906	3.979	7.546	10.969	9.755	10.352	4.475	8.711	5.371	2.787	3.546	6.901	3.526	3.383	11.695
4819	chr14	70683153	70690034	+	0	NA	intron (NM_023045, intron 13 of 27)	intron (NM_023045, intron 13 of 27)	-33509	NM_181345	328440	Mm.347749	NM_181345	ENSMUSG00000047911	Npm2	-	nucleophosmin/nucleoplasmin 2	protein-coding	2.672	10.915	5.412	3.426	1.462	0.740	1.349	2.794	2.463	4.038	1.850	1.302	1.708	2.468	3.083	2.835	1.501	2.972	2.659	nan	1.029	2.408	1.629	1.350	3.423
3604	chr12	88258676	88261296	+	0	NA	Intergenic	Intergenic	14511	NM_001013824	435337	Mm.441366	NM_001013824	ENSMUSG00000079029	Gm5662	EG435337	predicted gene 5662	protein-coding	8.796	0.804	0.247	4.878	2.822	1.557	6.521	6.160	4.119	4.725	1.417	1.561	8.687	7.457	5.577	8.037	7.797	6.629	2.719	1.743	1.126	4.944	1.664	1.093	12.858
11039	chr5	17732198	17733463	+	0	NA	Intergenic	RMER17A|LTR|ERVK	103066	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	3.223	0.651	0.204	1.280	1.912	1.277	3.694	1.533	1.771	1.660	0.936	0.401	3.088	3.536	1.856	1.592	3.174	2.708	0.453	0.564	0.507	0.536	0.789	0.382	1.230
3081	chr11	119421073	119425516	+	0	NA	Intergenic	Intergenic	32822	NR_035453	100316690		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.749	nan	0.206	0.478	0.479	0.225	nan	nan	0.591	nan	0.336	0.200	1.292	0.980	1.047	0.979	0.410	nan	2.240	nan	1.650	4.767	2.075	2.396	1.248
13223	chr7	56462251	56463554	+	0	NA	intron (NM_021879, intron 23 of 23)	RLTR10|LTR|ERVK	223131	NM_021879	18431	Mm.137052	NM_021879	ENSMUSG00000030450	Oca2	D7H15S12|D7Icr28RN|D7Nic1|p|p<cas>	oculocutaneous albinism II	protein-coding	1.639	0.971	0.644	2.091	1.307	0.752	2.100	3.616	1.716	3.029	0.321	1.617	3.197	5.468	2.382	2.839	2.177	3.081	4.015	1.662	0.693	3.274	2.531	1.389	4.235
11406	chr5	89887623	89889957	+	0	NA	Intergenic	Intergenic	-5456	NM_001081401	330119	Mm.133062	NM_177872	ENSMUSG00000043635	Adamts3	1100001H14Rik|6330442E02Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	protein-coding	3.414	0.570	0.561	1.654	1.151	0.485	2.179	3.249	2.627	2.410	0.362	0.628	4.044	4.769	3.154	3.184	4.093	2.070	0.399	0.445	0.368	0.331	0.531	0.126	1.108
4792	chr14	66842133	66852098	+	0	NA	intron (NM_009955, intron 3 of 13)	(CAGG)n|Simple_repeat|Simple_repeat	21485	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	4.056	11.217	6.223	2.761	2.063	1.435	2.289	2.822	2.756	3.446	3.506	2.223	1.279	2.963	2.121	1.964	1.256	2.568	1.135	nan	1.114	0.928	0.866	0.575	2.295
3099	chr11	119994618	120005821	+	0	NA	intron (NM_001037754, intron 12 of 13)	intron (NM_001037754, intron 12 of 13)	-14548	NR_037225	100526518		NR_037225	ENSMUSG00000105524	Mir3065	mir-3065|mmu-mir-3065	microRNA 3065	ncRNA	3.944	nan	0.763	3.319	2.277	1.856	3.598	5.783	3.765	6.209	0.780	0.610	5.392	6.786	3.979	4.613	3.629	5.699	1.110	nan	1.004	1.774	0.885	0.904	5.201
6751	chr17	56427051	56431353	+	0	NA	intron (NM_011218, intron 10 of 32)	intron (NM_011218, intron 10 of 32)	-10293	NR_105943	102465590		NR_105943	ENSMUSG00000098339	Mir6977	Gm27922|mmu-mir-6977	microRNA 6977	ncRNA	11.107	nan	2.206	8.938	7.115	3.415	12.065	9.764	6.657	7.747	8.322	4.162	9.116	14.239	11.281	14.484	9.483	9.637	2.004	2.593	1.613	2.442	3.010	2.415	14.239
5115	chr15	36419228	36423660	+	0	NA	Intergenic	Intergenic	75347	NM_175134	68839	Mm.396537	NM_175134	ENSMUSG00000048307	Ankrd46	1110054N06Rik|AI314978|AI987733	ankyrin repeat domain 46	protein-coding	5.202	2.434	0.647	5.204	4.028	1.403	4.690	7.827	5.452	7.421	1.419	0.822	5.592	7.483	5.671	4.279	3.278	7.614	0.438	0.472	0.153	nan	0.277	0.324	3.694
3634	chr12	100800496	100801609	+	0	NA	intron (NM_145448, intron 1 of 12)	L1Md_T|LINE|L1	21929	NM_145448	217830	Mm.218590	NM_145448	ENSMUSG00000021185	9030617O03Rik	-	RIKEN cDNA 9030617O03 gene	protein-coding	3.315	11.018	7.546	6.762	2.198	1.555	0.985	1.104	3.646	3.583	0.949	2.096	1.260	2.462	2.530	3.042	2.402	4.217	6.857	2.770	3.048	6.157	1.675	1.976	3.619
3760	chr12	113854742	113873368	+	0	NA	Intergenic	Lx|LINE|L1	320147	NM_174885	238406	Mm.188683	NM_174885	ENSMUSG00000043945	Adam6a	Adam6|tMDCIV	a disintegrin and metallopeptidase domain 6A	protein-coding	nan	5.869	1.690	6.226	3.970	2.243	6.219	8.056	4.917	7.761	3.584	1.915	9.806	9.911	7.061	10.851	7.310	3.703	1.462	0.981	1.089	1.524	0.988	0.772	13.211
9539	chr3	95505647	95514333	+	0	NA	TTS (NM_007802)	TTS (NM_007802)	10780	NM_007802	13038	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	3.985	1.502	1.170	3.372	3.929	3.347	4.137	1.697	3.435	3.331	nan	2.714	4.399	4.691	2.780	nan	1.422	3.006	0.953	1.452	1.226	0.986	1.031	1.177	2.877
2278	chr11	60512120	60514767	+	0	NA	intron (NM_001103171, intron 54 of 63)	intron (NM_001103171, intron 54 of 63)	-24240	NM_172943	268420	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	7.214	6.673	1.771	8.513	4.213	2.012	6.875	6.081	5.004	8.828	5.932	3.554	5.334	8.362	8.203	9.150	5.993	7.684	nan	3.441	3.136	4.424	2.945	3.268	11.008
4152	chr13	54537862	54548777	+	0	NA	intron (NM_176987, intron 7 of 9)	RMER12|LTR|ERVK	22063	NM_001252647	97820	Mm.24593	NM_133797	ENSMUSG00000025871	4833439L19Rik	4930558H15Rik|C81457|Kiaa1191|P33monox	RIKEN cDNA 4833439L19 gene	protein-coding	nan	0.915	0.588	0.511	0.194	0.108	0.510	0.998	0.509	0.510	0.217	0.248	0.435	nan	0.513	nan	0.407	nan	6.554	5.277	2.730	7.532	6.785	4.414	nan
11586	chr5	114353854	114361506	+	0	NA	intron (NM_001164573, intron 22 of 30)	B2_Mm2|SINE|B2	22825	NM_001159941	330171	Mm.238285	NM_026145	ENSMUSG00000001098	Kctd10	AW536343|C87062|mBACURD3	potassium channel tetramerisation domain containing 10	protein-coding	5.958	3.936	1.547	5.602	3.640	2.641	4.004	4.976	4.224	6.269	5.460	2.533	4.511	6.630	5.288	6.107	4.191	5.785	nan	nan	2.901	4.356	nan	3.792	6.744
9945	chr4	11916417	11918438	+	0	NA	Intergenic	B3A|SINE|B2	48286	NM_001098231	381511	Mm.331489	NM_001033453	ENSMUSG00000049225	Pdp1	Gm1024|Ppm2c	pyruvate dehyrogenase phosphatase catalytic subunit 1	protein-coding	7.560	4.558	2.665	5.136	3.371	1.237	4.574	4.429	5.092	5.593	6.571	3.516	6.348	7.429	6.131	7.761	4.612	9.019	1.108	nan	0.243	1.157	0.596	0.217	5.670
4639	chr14	47406948	47408699	+	0	NA	exon (NM_144553, exon 8 of 19)	exon (NM_144553, exon 8 of 19)	10584	NM_144553	218977	Mm.240543	NM_144553	ENSMUSG00000037544	Dlgap5	C77459|C86398|Dap-5|Dlg7|Hurp|mKIAA0008	discs, large (Drosophila) homolog-associated protein 5	protein-coding	5.235	5.455	2.241	5.925	1.115	0.900	4.284	5.915	4.110	8.081	3.908	3.050	4.161	6.087	7.169	7.446	2.820	5.459	4.442	2.411	1.891	4.462	2.694	2.789	10.372
14550	chr8	108596827	108598448	+	0	NA	Intergenic	B3|SINE|B2	-12960	NR_077224	109215	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	3.251	1.296	1.214	2.056	5.635	3.680	1.008	2.882	2.650	2.810	1.272	2.156	2.301	3.938	1.997	2.643	2.795	2.623	1.399	2.080	1.714	2.031	2.249	1.994	1.445
7912	chr19	60948026	60950935	+	0	NA	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	59731	NM_018869	14773	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	7.017	5.145	2.074	4.736	4.131	2.495	5.904	8.152	2.516	3.062	3.922	1.425	5.197	7.469	5.145	5.640	7.305	5.354	1.013	1.832	0.901	1.820	1.728	1.571	8.299
6413	chr17	25946136	25947417	+	0	NA	Intergenic	Intergenic	-1845	NM_001039038	621239	Mm.381070	NM_001039038	ENSMUSG00000090113	Nhlrc4	F430201B04Rik	NHL repeat containing 4	protein-coding	0.294	0.424	0.294	2.312	0.154	0.087	0.635	0.398	0.904	1.417	0.253	0.158	0.382	0.325	1.560	nan	0.336	1.942	8.486	2.274	4.138	11.591	4.772	7.643	2.329
11939	chr5	145552957	145554366	+	0	NA	Intergenic	IAPEY3-int|LTR|ERVK	31069	NM_017396	53973	Mm.379071	NM_017396	ENSMUSG00000075551	Cyp3a41a	Cyp3a41	cytochrome P450, family 3, subfamily a, polypeptide 41A	protein-coding	2.325	0.371	0.181	nan	1.050	0.766	3.296	4.017	nan	1.613	0.445	0.213	3.330	3.443	3.076	3.633	2.347	1.633	0.377	0.575	0.638	0.945	0.723	0.419	3.398
11022	chr5	16057992	16061388	+	0	NA	intron (NM_001110846, intron 3 of 37)	intron (NM_001110846, intron 3 of 37)	124999	NM_001110844	12293	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding	3.400	1.268	0.616	2.820	1.280	0.995	1.438	2.550	1.367	1.455	1.256	0.294	0.493	1.837	2.404	1.460	1.253	2.057	6.735	5.217	3.041	2.748	9.481	7.077	1.387
5407	chr15	78616293	78619026	+	0	NA	intron (NM_028195, intron 9 of 12)	intron (NM_028195, intron 9 of 12)	20612	NM_028195	72318	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	4.126	2.115	0.539	6.271	2.062	0.891	nan	2.723	1.907	nan	nan	0.772	0.926	2.356	1.913	2.891	nan	3.212	0.684	1.318	0.943	nan	0.447	0.562	3.873
7757	chr19	38910589	38911943	+	0	NA	intron (NM_145952, intron 8 of 12)	B1_Mur1|SINE|Alu	-19724	NM_008234	15201	Mm.57223	NM_008234	ENSMUSG00000025001	Hells	AI323785|E130115I21Rik|LSH|Lysh|PASG|YFK8	helicase, lymphoid specific	protein-coding	4.852	7.736	1.875	10.673	3.110	2.079	4.985	7.071	4.263	13.646	4.569	3.191	4.552	5.059	8.939	9.808	3.320	9.736	2.445	0.803	1.853	6.337	1.904	3.511	14.948
1532	chr10	81057862	81066490	+	0	NA	Intergenic	Intergenic	-2022	NM_024499	52551	Mm.30068	NM_024499	ENSMUSG00000004937	Sgta	5330427H01Rik|AI194281|D10Ertd190e|Sgt|Stg	small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	protein-coding	6.084	1.391	0.892	nan	2.566	2.424	6.456	5.251	3.445	5.108	1.410	1.425	5.344	6.974	nan	6.360	6.110	4.224	nan	2.336	2.862	2.839	3.416	3.871	7.791
14988	chr9	42808374	42810038	+	0	NA	intron (NM_175481, intron 2 of 20)	intron (NM_175481, intron 2 of 20)	135165	NM_175481	110637	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	3.779	0.691	0.431	2.017	0.687	0.159	2.490	3.877	3.025	2.784	1.384	0.837	4.496	4.973	4.561	6.872	3.055	4.250	nan	0.482	0.317	0.460	0.585	0.111	4.085
4246	chr13	73904262	73916094	+	0	NA	Intergenic	Intergenic	27589	NM_027182	69716	Mm.275095	NM_027182	ENSMUSG00000021569	Trip13	2410002G23Rik|D13Ertd328e	thyroid hormone receptor interactor 13	protein-coding	5.103	2.088	0.819	3.600	2.041	1.233	4.494	6.487	4.290	3.645	1.749	0.687	5.404	5.105	5.594	6.574	3.558	5.599	1.811	1.098	0.909	2.662	1.752	1.192	6.468
7386	chr18	74843498	74852115	+	0	NA	Intergenic	Intergenic	68594	NM_177470	52538	Mm.245724	NM_177470	ENSMUSG00000036880	Acaa2	0610011L04Rik|AI255831|AI265397|D18Ertd240e	acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	protein-coding	3.639	nan	0.317	1.953	2.383	0.983	5.131	2.751	2.106	nan	0.385	0.488	6.338	2.803	4.760	4.275	3.037	3.069	0.613	nan	0.329	0.627	0.474	0.527	4.342
10148	chr4	62134521	62144505	+	0	NA	Intergenic	IAPEY3-int|LTR|ERVK	11328	NM_001009550	381531	Mm.472122	NM_001009550	ENSMUSG00000066153	Mup21	Gm11208|Mup|Mup26|OTTMUSG00000000231|bM64F17.1|bM64F17.4	major urinary protein 21	protein-coding	4.650	nan	1.177	2.687	1.984	1.770	6.457	5.397	3.759	3.214	3.524	2.236	4.516	5.120	5.518	5.998	4.578	3.953	nan	1.275	1.064	1.970	1.226	1.255	5.893
9577	chr3	97602918	97608298	+	0	NA	intron (NM_026539, intron 1 of 22)	ORR1E|LTR|ERVL-MaLR	4582	NM_026539	68058	Mm.31761	NM_026539	ENSMUSG00000028089	Chd1l	4432404A22Rik|Alc1|Snf2p	chromodomain helicase DNA binding protein 1-like	protein-coding	3.867	1.348	0.939	0.853	0.337	0.187	4.538	4.855	0.896	0.629	nan	0.396	3.956	3.716	6.111	2.886	2.565	2.491	0.701	0.375	0.342	0.404	0.243	0.141	4.128
14071	chr8	23867720	23869303	+	0	NA	intron (NM_001277239, intron 4 of 7)	L1MC5|LINE|L1	198850	NM_177086	320158	Mm.121274	NM_177086	ENSMUSG00000037492	Zmat4	9630048M01Rik	zinc finger, matrin type 4	protein-coding	3.290	nan	0.788	3.418	1.339	0.846	2.567	3.602	1.630	2.036	2.370	1.116	2.135	3.296	4.263	3.405	1.401	3.101	1.423	1.386	0.738	nan	1.996	0.494	3.144
7036	chr18	12730143	12732305	+	0	NA	intron (NM_028341, intron 10 of 13)	intron (NM_028341, intron 10 of 13)	-10131	NM_001042419	71132	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	nan	1.355	1.546	0.250	0.136	0.226	0.385	0.477	0.423	0.313	0.684	0.504	nan	0.267	0.340	0.569	0.424	0.626	3.592	5.893	3.327	5.850	3.320	2.049	0.534
5518	chr15	84872892	84873735	+	0	NA	Intergenic	Intergenic	-17184	NR_030731	271305	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	3.849	13.249	4.570	4.610	1.676	0.710	2.089	2.493	2.466	2.708	1.583	1.370	4.014	3.428	2.241	2.764	1.641	3.625	5.267	3.478	0.286	5.900	2.024	0.701	4.477
11201	chr5	40104738	40110181	+	0	NA	Intergenic	Intergenic	-462828	NM_010474	15476	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	5.264	0.643	0.518	2.631	2.967	2.027	6.042	6.308	5.137	4.818	5.472	5.496	7.313	6.700	6.628	5.668	4.622	6.024	0.854	0.823	0.457	0.626	1.086	0.713	4.110
10270	chr4	94405838	94409872	+	0	NA	Intergenic	Intergenic	148941	NM_026368	67770	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	2.177	nan	0.413	4.276	1.170	0.927	0.963	1.065	2.995	2.223	0.874	1.432	1.049	1.459	nan	1.708	1.049	2.706	2.900	1.521	1.023	nan	0.664	0.497	1.604
7931	chr2	4513664	4515466	+	0	NA	intron (NM_001347086, intron 7 of 24)	G-rich|Low_complexity|Low_complexity	-45189	NM_001177844	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	7.186	1.263	0.421	3.975	3.070	1.563	4.869	2.711	3.411	3.865	1.429	0.775	6.297	6.421	4.990	6.741	4.013	5.267	1.301	0.724	0.610	0.999	1.000	0.691	7.592
12193	chr6	40377316	40386857	+	0	NA	intron (NM_023538, intron 10 of 15)	intron (NM_023538, intron 10 of 15)	54047	NM_175528	243780	Mm.333006	NM_175528	ENSMUSG00000037172	E330009J07Rik	AI841796|Lchn|mKIAA1147	RIKEN cDNA E330009J07 gene	protein-coding	2.046	3.049	1.278	2.361	1.030	0.598	2.106	5.737	2.333	3.052	1.569	2.542	3.165	2.608	3.596	nan	1.597	nan	6.955	5.015	3.329	8.954	nan	4.422	nan
6608	chr17	36038938	36041800	+	0	NA	intron (NM_010399, intron 5 of 9)	G-rich|Low_complexity|Low_complexity	2323	NM_010399	15051	Mm.195061	NM_010399		H2-T9	H-2T9	histocompatibility 2, T region locus 9	protein-coding	4.063	1.609	0.854	4.102	2.555	1.930	5.377	4.854	3.328	3.485	2.112	0.991	5.009	7.336	5.676	6.797	4.438	5.810	1.595	0.797	0.717	1.020	0.768	0.559	7.271
6214	chr16	92570065	92571095	+	0	NA	Intergenic	Intergenic	72433	NM_172469	209195	Mm.44747	NM_172469	ENSMUSG00000022949	Clic6	5730466J16Rik|AL022908|AW045520|CLIC1L	chloride intracellular channel 6	protein-coding	3.428	nan	0.982	1.753	3.100	2.244	2.223	2.552	2.152	2.233	0.790	1.177	4.257	5.914	2.321	4.094	3.183	2.604	0.660	0.498	0.822	nan	0.561	0.694	2.680
6185	chr16	90216868	90218833	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-2892	NM_011434	20655	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	6.677	nan	0.784	4.515	4.463	3.623	7.631	9.815	4.258	4.151	1.696	1.860	10.690	8.777	6.690	12.230	7.716	7.621	3.280	1.425	2.091	nan	2.630	3.337	7.827
4233	chr13	67858237	67861668	+	0	NA	Intergenic	Lx3_Mus|LINE|L1	-3374	NM_001001185	408058	Mm.177840	NM_001001185	ENSMUSG00000064063	BC048507	-	cDNA sequence BC048507	protein-coding	1.400	0.447	0.372	2.631	3.372	2.294	1.716	0.209	0.840	1.482	0.556	0.264	4.347	10.074	2.960	nan	0.281	5.154	0.560	0.379	0.302	0.352	0.233	0.250	4.784
4532	chr14	24997657	25001947	+	0	NA	Intergenic	B4A|SINE|B4	143439	NR_045718	75862	Mm.109191	NR_045718		4930572O13Rik	-	RIKEN cDNA 4930572O13 gene	ncRNA	4.825	0.767	0.473	1.906	1.055	0.865	3.220	4.377	3.210	3.864	3.127	1.801	3.554	2.471	3.146	3.824	nan	4.094	1.384	0.965	1.062	nan	1.635	1.230	6.025
13800	chr7	137124180	137131113	+	0	NA	intron (NM_008598, intron 4 of 4)	intron (NM_008598, intron 4 of 4)	-107037	NR_045885	100038555	Mm.444788	NR_045885	ENSMUSG00000109722	Gm10578	ENSMUSG00000073800	predicted gene 10578	ncRNA	5.356	nan	0.407	2.994	2.695	1.510	3.719	6.866	nan	5.451	1.093	0.579	6.248	6.339	7.324	7.566	5.901	7.079	2.001	1.461	1.070	2.172	1.192	0.834	7.531
4238	chr13	71040976	71042691	+	0	NA	Intergenic	MTE2b|LTR|ERVL-MaLR	-65256	NR_130325	100316804		NR_130325	ENSMUSG00000080580	Mir466f-4	Mirn466f-4|mmu-mir-466f-4	microRNA 466f-4	ncRNA	3.069	0.258	0.154	0.552	0.222	0.128	3.477	4.119	2.576	3.908	0.511	0.105	3.523	4.778	3.339	4.949	1.964	1.771	0.735	0.102	0.071	0.956	0.196		1.870
9529	chr3	95115122	95124903	+	0	NA	intron (NM_009336, intron 4 of 5)	intron (NM_009336, intron 4 of 5)	-4502	NM_016712	50874	Mm.71935	NM_016712	ENSMUSG00000005628	Tmod4	MTMOD|Sk-Tmod	tropomodulin 4	protein-coding	9.164	4.716	1.998	6.179	8.386	6.664	11.251	10.188	6.925	9.783	nan	4.353	11.752	14.253	8.176	9.434	9.414	8.596	1.726	1.724	1.924	1.007	1.838	1.886	12.218
4346	chr13	102459988	102465136	+	0	NA	Intergenic	Intergenic	-230996	NM_008533	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly78|RP105	CD180 antigen	protein-coding	3.830	5.045	2.665	3.718	2.045	1.327	1.906	2.375	2.926	3.346	3.950	1.980	1.789	3.507	3.571	2.674	nan	nan	5.194	3.014	1.646	3.954	2.147	1.718	3.169
12450	chr6	90930395	90931468	+	0	NA	Intergenic	MIR|SINE|MIR	-120808	NM_001134384	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	2.085	0.404	0.054	1.536	0.882	0.551	5.359	4.391	2.022	1.415	0.716	0.463	3.961	4.912	4.211	5.645	3.003	3.806	nan	0.704	0.913	0.663	2.277	1.453	3.806
15091	chr9	54969734	54972018	+	0	NA	Intergenic	Intergenic	-10004	NM_176844	110835	Mm.103778	NM_176844	ENSMUSG00000035594	Chrna5	Acra-5|Acra5	cholinergic receptor, nicotinic, alpha polypeptide 5	protein-coding	4.804	0.868	0.199	1.247	0.753	0.393	6.235	7.422	1.956	1.617	2.970	1.957	4.250	5.441	4.834	5.025	3.206	2.616	0.954	0.565	0.268	0.531	0.235	0.547	5.121
7170	chr18	38064651	38067608	+	0	NA	Intergenic	Intergenic	-67160	NM_001205336	106952	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	3.319	0.838	0.628	1.688	1.643	1.105	1.814	2.484	4.377	3.583	1.043	0.877	5.116	3.481	2.423	2.696	3.659	4.224	1.125	0.843	0.618	0.939	0.708	0.704	2.302
13983	chr8	10909143	10916989	+	0	NA	Intergenic	Intergenic	13144	NR_102285	71624	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	4.247	1.700	0.773	4.123	3.431	1.551	3.803	4.241	4.933	5.194	1.773	0.926	6.872	4.069	4.478	7.385	5.029	4.161	0.923	0.909	0.623	1.396	0.765	0.512	4.373
8166	chr2	34382061	34383439	+	0	NA	Intergenic	(TTTA)n|Simple_repeat|Simple_repeat	-10705	NM_016768	18516	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	1.666	1.037	0.119	2.966	1.554	0.333	2.228	1.815	2.061	2.483	0.672	0.364	3.282	4.197	4.069	4.474	3.141	3.695	1.240	0.687	0.334	2.765	0.677	0.561	3.307
13458	chr7	104991088	104994735	+	0	NA	Intergenic	Intergenic	3991	NM_146760	258755	Mm.377677	NM_146760	ENSMUSG00000051172	Olfr672	MOR32-4|Ors46	olfactory receptor 672	protein-coding	4.204	0.885	0.451	2.508	1.752	1.503	1.930	5.916	4.274	4.161	2.594	4.001	5.052	4.742	3.662	nan	2.760	3.237	6.567	3.949	1.468	3.663	6.428	4.705	2.969
5022	chr15	7078845	7082003	+	0	NA	Intergenic	Intergenic	-49148	NM_001113386	16880	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	5.875	3.492	0.884	7.593	1.859	0.822	4.450	5.690	3.836	7.607	1.531	1.715	5.479	5.266	4.339	5.127	4.499	6.615	3.015	0.925	1.712	3.422	1.525	2.691	10.267
5259	chr15	63889960	63893282	+	0	NA	3' UTR (NM_028992, exon 12 of 12)	3' UTR (NM_028992, exon 12 of 12)	10914	NR_108053	665769	Mm.290602	NR_108053	ENSMUSG00000093867	Gsdmcl2	4921501E01Rik|4930453O09Rik|Gm7779	gasdermin C-like 2	pseudo	9.210	15.734	5.992	8.061	4.599	2.505	7.261	9.444	4.868	12.437	4.252	2.021	6.063	8.762	8.239	8.077	7.579	7.797	3.074	2.429	2.660	3.399	2.575	2.989	11.180
5398	chr15	78266886	78269782	+	0	NA	Intergenic	(CATATA)n|Simple_repeat|Simple_repeat	16515	NR_106138	102466845		NR_106138	ENSMUSG00000099059	Mir7676-2	Gm27790|mmu-mir-7676-2	microRNA 7676-2	ncRNA	nan	nan	0.813	nan	0.692	0.684	7.421	7.092	0.952	nan	nan	0.277	4.224	5.784	5.073	3.252	nan	2.540	4.177	2.520	3.053	nan	3.636	3.657	8.411
1925	chr11	4996106	5000871	+	0	NA	intron (NM_007454, intron 1 of 20)	B4|SINE|B4	11664	NM_007454	11764	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	8.644	12.612	4.011	10.179	5.918	3.667	7.168	7.777	5.890	10.519	7.285	3.970	7.073	10.130	8.782	9.579	6.057	8.542	6.700	nan	3.158	6.939	4.490	4.649	11.475
2574	chr11	86381689	86444292	+	0	NA	Intergenic	Intergenic	-2854	NR_030571	100124487		NR_030571	ENSMUSG00000077049	Mir467c	Mirn467c|mir-467c	microRNA 467c	ncRNA	nan	10.001	6.065	8.005	10.212	7.828	7.858	8.660	9.464	8.928	10.123	7.788	8.062	10.625	7.404	7.451	7.156	9.152	5.471	4.708	4.315	nan	4.264	4.217	nan
2916	chr11	106871031	106874718	+	0	NA	intron (NM_025481, intron 2 of 18)	ORR1F|LTR|ERVL-MaLR	47841	NM_025481	66313	Mm.340955	NM_025481	ENSMUSG00000018363	Smurf2	2810411E22Rik|AI558114|AI649275	SMAD specific E3 ubiquitin protein ligase 2	protein-coding	6.922	5.580	3.331	5.717	6.443	3.778	6.441	6.746	nan	nan	4.252	2.497	6.455	8.873	6.845	6.685	6.987	5.560	2.360	3.477	2.644	nan	3.078	3.037	5.391
3126	chr11	120756587	120767465	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	22178	NM_009053	19719	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	5.526	nan	1.017	4.711	2.855	1.755	nan	5.643	6.927	nan	1.620	1.521	7.720	8.252	6.995	8.055	6.159	7.811	1.314	nan	1.026	1.152	0.873	0.744	7.410
9421	chr3	86976150	86978911	+	0	NA	Intergenic	L1_Mur3|LINE|L1	-9056	NM_007640	12480	Mm.389465	NM_007640	ENSMUSG00000041750	Cd1d2	CD1.2|Cd1b|Ly-38	CD1d2 antigen	protein-coding	2.880	2.366	1.341	3.086	2.453	1.157	10.314	1.912	1.855	2.689	5.334	1.692	3.043	5.771	3.432	4.933	2.948	2.921	nan	4.101	3.091	4.211	3.049	3.074	1.989
1544	chr10	83873835	83876620	+	0	NA	Intergenic	(TCTA)n|Simple_repeat|Simple_repeat	152362	NM_001145198	69784	Mm.271188	NM_001145198	ENSMUSG00000087651	1500009L16Rik	2700050C19Rik|OCC-1	RIKEN cDNA 1500009L16 gene	protein-coding	7.418	2.009	0.893	3.321	1.779	0.867	3.222	1.916	2.519	2.701	1.746	0.832	3.821	3.377	3.640	4.460	4.655	3.986	0.577	0.699	0.629	2.124	nan	0.422	6.527
1616	chr10	93612630	93614755	+	0	NA	Intergenic	Intergenic	-24034	NM_027246	69878	Mm.259642	NM_027246	ENSMUSG00000020018	Snrpf	2010013O18Rik|SMF|sm-F|snRNP-F	small nuclear ribonucleoprotein polypeptide F	protein-coding	7.066	0.861	0.326	4.084	4.239	1.728	4.723	5.000	3.383	3.045	5.125	3.923	5.774	6.795	5.049	5.399	7.081	4.544	nan	0.554	0.314	nan	0.524	0.133	4.954
13216	chr7	54305551	54308933	+	0	NA	Intergenic	Intergenic	-415353	NR_105746	102466619		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	5.481	6.607	1.725	4.650	2.050	0.544	4.632	3.853	2.796	5.972	2.556	1.391	3.114	5.299	4.649	4.687	1.837	3.717	3.422	2.858	1.763	5.353	2.181	1.799	6.936
8962	chr2	164292708	164293843	+	0	NA	Intergenic	Intergenic	4007	NM_021363	64335	Mm.389393	NM_021363	ENSMUSG00000017003	Svs3a	9530026M05Rik|BB121242|Semg2|Svp-3|Svp3|Svs3	seminal vesicle secretory protein 3A	protein-coding	2.682	0.378	0.291	0.544	0.574	0.106	5.468	3.713	1.319	0.917	2.108	1.200	3.682	3.967	3.556	4.820	1.691	1.434	nan	0.283	0.123	0.351	0.668	0.173	5.078
7749	chr19	38033473	38035239	+	0	NA	intron (NM_001302140, intron 1 of 53)	Lx5b|LINE|L1	9221	NM_001099634	226101	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	2.136	2.292	1.379	1.189	0.693	0.375	2.432	2.757	1.928	1.667	7.885	3.993	1.722	3.017	1.475	1.293	nan	1.678	0.467	0.341	0.069	0.907	0.194	0.142	1.516
13010	chr7	25910734	25918143	+	0	NA	intron (NM_009999, intron 4 of 8)	ID_B1|SINE|B4	16780	NM_009999	13088	Mm.218749	NM_009999	ENSMUSG00000030483	Cyp2b10	Cyp2b|Cyp2b20|p16	cytochrome P450, family 2, subfamily b, polypeptide 10	protein-coding	1.344	14.140	7.868	1.626	0.969	0.630	0.719	0.856	0.893	1.352	0.715	0.379	0.605	0.674	0.770	0.959	0.883	0.974	0.970	1.948	1.633	0.908	1.008	0.869	1.213
4694	chr14	56201434	56203596	+	0	NA	Intergenic	Lx5c|LINE|L1	8892	NM_010374	14943	Mm.457976	NM_010374	ENSMUSG00000015441	Gzmf	CCP4|Ctla-7|Ctla7|MCSP-3	granzyme F	protein-coding	1.755	nan	1.316	1.744	2.259	1.886	1.777	2.980	1.487	1.369	1.046	1.569	1.065	2.616	1.683	1.991	2.169	1.335	6.115	3.646	2.512	3.515	8.202	7.139	1.598
396	chr1	88427280	88430635	+	0	NA	Intergenic	Intergenic	21947	NM_029269	75396	Mm.173058	NM_029269	ENSMUSG00000026295	Spp2	0610038O04Rik|pp-24|spp24	secreted phosphoprotein 2	protein-coding	2.914	2.748	1.394	2.281	1.727	0.755	2.539	1.831	1.775	1.676	1.748	1.062	2.105	2.747	3.225	5.201	3.360	3.281	2.780	1.853	0.907	nan	2.551	1.611	2.827
482	chr1	99870595	99874772	+	0	NA	intron (NM_172851, intron 1 of 23)	B4A|SINE|B4	99918	NM_172851	241175	Mm.251301	NM_172851	ENSMUSG00000067028	Cntnap5b	C230078M14Rik|Caspr5-2	contactin associated protein-like 5B	protein-coding	5.457	nan	0.460	4.034	1.586	0.790	6.135	3.071	5.207	5.689	4.849	7.821	7.682	5.169	6.217	nan	5.006	5.946	11.632	6.923	5.487	nan	10.243	9.432	nan
7865	chr19	53255473	53261191	+	0	NA	Intergenic	Intergenic	-3127	NR_036590	69319	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	4.378	nan	1.530	5.904	3.957	2.213	2.519	nan	4.421	4.225	3.186	3.222	3.461	3.501	2.687	4.828	5.611	4.850	0.720	1.890	1.211	0.726	1.374	1.200	nan
8237	chr2	49666642	49670244	+	0	NA	intron (NM_008449, intron 1 of 25)	Lx3A|LINE|L1	49129	NM_008449	16574	Mm.256342	NM_008449	ENSMUSG00000026764	Kif5c	KINN|Khc|NKHC|NKHC2	kinesin family member 5C	protein-coding	4.683	0.825	0.289	4.525	3.413	1.769	5.018	9.409	5.905	5.392	3.934	3.226	6.160	10.011	5.047	9.383	5.271	6.744	1.720	1.046	0.391	2.355	1.978	0.928	4.028
7429	chr18	82656187	82669654	+	0	NA	intron (NM_177832, intron 6 of 29)	L1VL2|LINE|L1	29814	NM_177832	329002	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	6.338	nan	0.882	3.550	4.640	2.856	4.105	7.852	2.952	3.712	4.532	2.704	4.995	6.369	3.097	4.745	3.446	5.540	1.925	nan	1.268	1.880	1.991	1.458	5.520
499	chr1	108655079	108658173	+	0	NA	Intergenic	Intergenic	739367	NR_102307	319596	Mm.136054	NR_102306	ENSMUSG00000100457	D830032E09Rik	-	RIKEN cDNA D830032E09 gene	ncRNA	7.946	5.792	2.013	9.334	3.516	3.773	6.740	5.958	5.597	6.672	4.347	2.897	8.252	8.512	7.736	12.097	5.816	8.718	2.869	2.169	2.852	4.088	2.730	3.046	10.374
3432	chr12	75007989	75010413	+	0	NA	intron (NM_172805, intron 7 of 10)	intron (NM_172805, intron 7 of 10)	168131	NM_172805	238271	Mm.44465	NM_172805	ENSMUSG00000034402	Kcnh5	Eag2	potassium voltage-gated channel, subfamily H (eag-related), member 5	protein-coding	11.150	13.329	4.413	8.972	3.868	3.567	7.175	8.014	5.337	15.038	6.872	4.538	8.049	7.670	8.025	13.026	9.195	9.168	4.937	1.387	2.903	5.456	2.311	4.433	18.018
10454	chr4	119741894	119747220	+	0	NA	Intergenic	L2|LINE|L2	-70121	NM_010657	16656	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	1.010	1.069	0.803	1.586	0.519	0.347	0.365	1.022	1.482	0.960	0.803	2.090	0.294	0.644	0.807	nan	0.632	1.119	3.582	3.955	2.804	4.616	3.483	1.867	1.675
4556	chr14	26672152	26679435	+	0	NA	Intergenic	MTC-int|LTR|ERVL-MaLR	-5947	NM_178668	211948	Mm.290758	NM_178668	ENSMUSG00000043702	Pde12	2'-PDE|E430028B21Rik	phosphodiesterase 12	protein-coding	3.763	3.651	1.809	4.521	5.769	2.783	3.853	8.420	4.338	4.543	3.426	3.383	3.635	6.255	4.876	5.653	nan	5.314	6.286	3.409	2.129	6.883	5.284	3.479	4.542
14981	chr9	41914338	41926938	+	0	NA	Intergenic	URR1B|DNA|hAT-Charlie	203651	NM_011436	20660	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	5.069	5.248	2.919	3.933	3.195	1.213	5.259	4.672	4.345	5.199	3.008	1.583	6.063	8.223	5.723	7.243	nan	6.807	nan	1.609	0.853	1.441	1.160	0.710	8.066
6783	chr17	65131201	65132433	+	0	NA	Intergenic	MTC-int|LTR|ERVL-MaLR	-295746	NM_030031	78057	Mm.109380	NM_030031	ENSMUSG00000024088	4930583I09Rik	-	RIKEN cDNA 4930583I09 gene	protein-coding	4.607	0.535	0.477	1.624	3.805	2.757	2.860	4.643	2.042	3.483	1.278	0.611	2.824	4.981	2.326	2.272	4.638	2.641	1.512	2.465	1.965	0.838	4.517	3.238	2.198
1047	chr1	194677739	194682604	+	0	NA	intron (NM_008882, intron 3 of 31)	MIRc|SINE|MIR	60342	NM_008882	18845	Mm.2251	NM_008882	ENSMUSG00000026640	Plxna2	2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463	plexin A2	protein-coding	4.880	1.039	0.409	1.520	0.867	0.629	6.844	4.281	3.073	5.573	4.610	1.803	5.507	3.507	5.763	9.054	6.431	4.429	3.499	1.176	1.937	3.108	nan	3.232	11.465
3856	chr13	17676518	17678063	+	0	NA	intron (NM_138654, intron 1 of 13)	Lx3A|LINE|L1	17475	NM_138654	192136	Mm.364180	NM_138654	ENSMUSG00000055137	Sugct	5033411D12Rik|D17907	succinyl-CoA glutarate-CoA transferase	protein-coding	1.564	0.445	0.453	0.951	0.753	0.363	2.241	1.839	1.438	0.874	3.367	0.900	1.692	2.971	1.167	1.116	nan	1.400	0.831	0.555	0.118	0.296	0.409	0.161	nan
10263	chr4	89068689	89070450	+	0	NA	intron (NR_033533, intron 2 of 2)	intron (NR_033533, intron 2 of 2)	19262	NR_033533	100040617	Mm.171720	NR_033533	ENSMUSG00000085183	Gm12603	OTTMUSG00000007693	predicted gene 12603	ncRNA	2.133	nan	0.296	1.512	2.180	1.509	1.849	2.828	2.611	2.046	1.719	1.275	2.149	5.428	2.525	2.120	0.916	3.516	1.205	nan	0.624	1.196	0.370	0.458	nan
12477	chr6	92822691	92830173	+	0	NA	intron (NM_175314, intron 18 of 29)	intron (NM_175314, intron 18 of 29)	75009	NM_175314	101401	Mm.158235	NM_175314	ENSMUSG00000030022	Adamts9	1810011L16Rik|8430403M15Rik|AW743315|E030027K14Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 9	protein-coding	4.930	0.486	0.256	nan	2.744	1.465	7.590	4.781	3.309	3.195	0.372	0.456	7.315	7.036	8.364	9.958	8.236	nan	nan	0.584	0.460	0.529	0.409	0.221	6.003
10482	chr4	122671305	122680420	+	0	NA	Intergenic	Intergenic	-13397	NM_023865	77432	Mm.491436	NM_023865	ENSMUSG00000023263	9530002B09Rik	Aump|Vpp1|Vppl	RIKEN cDNA 9530002B09 gene	protein-coding	0.804	1.387	0.386	1.259	0.367	0.311	0.648	1.215	0.706	1.236	2.078	1.215	0.714	0.828	1.459	nan	0.800	1.196	5.188	11.709	8.291	10.013	2.980	2.442	2.241
8877	chr2	156542949	156548796	+	0	NA	Intergenic	Intergenic	-1704	NM_026661	68295	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	10.874	6.189	2.795	7.650	7.624	4.938	9.028	9.313	nan	8.445	4.520	2.726	nan	8.691	6.409	9.262	7.774	8.168	nan	4.027	3.980	3.658	4.526	4.250	13.377
3228	chr12	25256613	25258932	+	0	NA	Intergenic	Intergenic	128598	NR_045844	432641	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	3.499	4.723	1.562	3.426	2.038	0.958	3.496	2.654	2.116	3.541	3.045	1.867	3.519	4.926	5.736	5.540	4.554	4.385	3.093	1.728	1.392	2.730	2.055	2.651	7.963
909	chr1	178902792	178904550	+	0	NA	intron (NM_001161665, intron 10 of 14)	intron (NM_001161665, intron 10 of 14)	374546	NM_001161665	269152	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	1.214	5.301	5.552	1.500	1.287	0.557	0.834	0.561	1.050	0.869	0.506	0.680	0.325	nan	0.590	1.360	0.962	1.566	1.862	1.895	1.087	0.953	0.970	1.034	0.745
5996	chr16	31695170	31697035	+	0	NA	intron (NR_045516, intron 4 of 24)	intron (NR_045516, intron 4 of 24)	32167	NM_001252434	13383	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs, large homolog 1 (Drosophila)	protein-coding	4.852	1.948	1.510	2.311	2.158	0.704	2.972	4.468	1.715	1.935	1.270	1.120	4.710	3.885	3.397	4.209	3.748	4.780	0.874	0.605	0.256	0.657	nan	0.346	3.206
13990	chr8	11155385	11156736	+	0	NA	Intergenic	Intergenic	-147630	NM_001081212	384783	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	3.776	4.927	2.953	2.218	4.168	2.161	2.480	6.857	1.783	1.784	0.952	1.773	3.075	6.774	2.663	3.733	2.307	2.818	4.955	3.587	1.591	8.369	8.013	5.051	3.134
12433	chr6	89702009	89703123	+	0	NA	Intergenic	Lx|LINE|L1	-11637	NM_053228	113855	Mm.377152	NM_053228	ENSMUSG00000096051	Vmn1r40	V1rb7	vomeronasal 1 receptor 40	protein-coding	2.705	0.215	0.598	nan	2.064	1.466	2.380	1.108	1.574	1.301	1.040	0.617	1.183	3.823	1.233	0.871	1.137	nan	nan	0.759	0.544	0.161	0.299	0.811	0.650
13837	chr7	140303662	140317506	+	0	NA	Intergenic	L1_Mur3|LINE|L1	-12117	NM_146956	258958	Mm.347648	NM_146956	ENSMUSG00000061489	Olfr525	MOR251-2	olfactory receptor 525	protein-coding	5.263	nan	0.442	6.094	3.408	1.913	7.367	9.367	nan	7.496	4.511	4.307	7.218	8.077	8.209	7.197	5.522	7.095	3.539	1.554	1.951	4.089	2.240	2.957	9.784
9708	chr3	108761111	108763248	+	0	NA	intron (NM_177859, intron 5 of 11)	intron (NM_177859, intron 5 of 11)	22521	NM_177859	329738	Mm.72322	NM_177859	ENSMUSG00000049565	Aknad1	4921525H12Rik	AKNA domain containing 1	protein-coding	3.326	0.965	0.678	3.360	2.393	1.496	3.978	3.391	2.868	3.228	8.114	3.002	5.096	6.340	3.581	5.258	4.008	4.460	1.835	1.473	1.147	2.609	1.047	1.072	5.161
1124	chr10	18594927	18598434	+	0	NA	intron (NM_001033258, intron 31 of 33)	intron (NM_001033258, intron 31 of 33)	-50604	NM_019487	56016	Mm.35551	NM_019487	ENSMUSG00000019853	Hebp2	SOUL	heme binding protein 2	protein-coding	2.138	0.491	0.777	1.277	2.774	1.325	1.331	3.460	nan	2.167	8.553	2.656	1.676	2.817	1.785	2.370	1.630	2.731	1.728	0.777	0.550	1.628	1.093	0.881	nan
2618	chr11	88548258	88549617	+	0	NA	intron (NM_054043, intron 6 of 13)	intron (NM_054043, intron 6 of 13)	-70314	NR_131025	68397	Mm.426889	NR_131025		0610039H22Rik	-	RIKEN cDNA 0610039H22 gene	ncRNA	2.328	0.841	0.393	3.390	1.799	1.310	2.303	2.676	2.707	2.606	1.488	1.102	1.640	3.627	2.575	4.137	2.576	2.851	2.502	1.389	1.188	nan	1.896	0.993	2.578
2981	chr11	115486854	115491028	+	0	NA	exon (NM_177778, exon 3 of 3)	exon (NM_177778, exon 3 of 3)	-2588	NR_136931	102634812	Mm.390379	NR_136931		LOC102634812	-	ribosomal protein L39 pseudogene	pseudo	3.267	9.688	7.562	2.299	3.678	2.942	nan	2.832	2.303	nan	1.398	2.246	2.128	3.091	2.974	3.000	2.918	nan	2.235	nan	2.228	1.883	2.149	2.219	2.280
4266	chr13	81489951	81492750	+	0	NA	intron (NM_054053, intron 48 of 89)	MTE2b|LTR|ERVL-MaLR	141794	NM_054053	110789	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	5.235	1.545	0.780	3.193	3.510	2.295	5.287	5.772	6.157	6.047	6.763	5.624	5.762	4.749	5.117	nan	3.916	4.602	1.360	1.920	1.355	0.970	1.244	0.947	3.078
14628	chr8	116197623	116199113	+	0	NA	Intergenic	Intergenic	-306647	NM_029297	75465	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	6.968	0.607	0.623	0.493	0.758	0.152	2.875	2.257	0.549	1.229	0.217	0.172	2.813	3.644	3.341	nan	4.524	1.394	0.415	0.760	0.651	0.674	0.389	0.126	7.307
8317	chr2	68297731	68298834	+	0	NA	intron (NM_016866, intron 14 of 17)	RLTR25A|LTR|ERVK	173699	NM_016866	53416	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	2.527	0.709	0.773	1.123	0.939	1.234	4.895	5.058	1.467	2.448	0.970	0.409	1.879	3.495	2.214	2.490	4.885	2.541	0.926	1.511	0.975	0.421	0.383	1.100	1.944
10010	chr4	42932839	42935481	+	0	NA	intron (NM_001346526, intron 3 of 8)	ID4|SINE|ID	16909	NM_172690	230085	Mm.240965	NM_172690	ENSMUSG00000036062	Phf24	GINIP|N28178	PHD finger protein 24	protein-coding	nan	0.477	0.294	1.737	2.843	1.535	1.103	3.245	2.227	2.598	0.208	0.317	2.897	2.370	3.876	5.582	3.619	nan	1.729	0.943	0.719	1.122	0.768	0.626	6.336
5618	chr15	98341964	98344914	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-2500	NM_146281	258278	Mm.377409	NM_146281	ENSMUSG00000051793	Olfr284	MOR160-4	olfactory receptor 284	protein-coding	3.876	8.250	5.232	3.336	2.561	2.338	1.924	3.050	2.936	3.082	1.703	1.779	1.284	3.135	2.264	2.294	2.683	2.106	1.195	1.457	1.448	1.362	0.748	0.874	2.786
12161	chr6	37371890	37382173	+	0	NA	intron (NM_178661, intron 2 of 11)	intron (NM_178661, intron 2 of 11)	65117	NM_178661	208647	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	6.051	1.772	0.766	3.981	4.478	2.250	7.613	4.771	4.020	4.738	2.569	1.670	7.836	8.265	6.021	8.893	7.335	6.954	nan	2.254	1.347	nan	nan	1.464	nan
11256	chr5	64282440	64286073	+	0	NA	intron (NM_001310611, intron 12 of 21)	intron (NM_001310611, intron 12 of 21)	53899	NM_001289514	57915	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	1.365	0.614	0.319	0.930	0.425	0.320	1.832	1.335	1.247	1.158	0.512	0.567	1.272	1.005	1.605	1.907	1.372	1.510	6.281	4.825	2.458	nan	7.812	5.446	1.472
7490	chr19	5484108	5488337	+	0	NA	intron (NM_027877, intron 5 of 15)	intron (NM_027877, intron 5 of 15)	2114	NM_027877	71711	Mm.27697	NM_027877	ENSMUSG00000024906	Mus81	1200008A18Rik|AI182501|AW045863	MUS81 structure-specific endonuclease subunit	protein-coding	6.227	4.019	1.322	6.010	2.372	1.258	6.140	6.471	nan	5.927	2.702	1.363	6.165	8.284	6.578	8.908	5.337	7.207	1.822	1.254	0.837	3.555	1.742	1.247	17.144
450	chr1	92988011	92995767	+	0	NA	Intergenic	ORR1A2|LTR|ERVL-MaLR	12986	NM_022320	64095	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	4.941	4.040	1.614	3.260	4.070	1.930	2.295	3.144	2.718	3.416	4.129	1.963	3.044	3.725	3.406	5.106	2.496	4.411	1.102	1.137	0.864	nan	0.788	0.540	3.890
11538	chr5	106304202	106306577	+	0	NA	Intergenic	MTE2a|LTR|ERVL-MaLR	-15951	NR_136913	102635633	Mm.383511	NR_136913	ENSMUSG00000105508	Gm32921	-	predicted gene, 32921	ncRNA	8.421	7.460	1.943	8.743	5.343	4.350	7.708	8.907	5.571	10.731	7.682	3.669	5.592	9.235	8.374	9.715	6.181	7.618	nan	2.227	2.087	4.439	2.663	4.317	10.962
7496	chr19	5780876	5782335	+	0	NA	Intergenic	RMER19B|LTR|ERVK	-10204	NM_023912	78891	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	3.430	0.528	0.752	2.761	3.151	2.596	3.609	3.621	nan	3.188	1.002	0.688	2.575	5.004	3.210	nan	5.463	3.406	0.543	0.975	0.724	0.425	0.951	0.966	4.222
14544	chr8	108322634	108323845	+	0	NA	Intergenic	L1Md_F2|LINE|L1	261438	NR_077224	109215	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	3.872	1.525	0.481	4.151	2.590	0.975	1.887	2.756	2.835	2.952	3.052	1.219	1.709	4.219	3.089	3.760	2.815	5.427	1.982	2.246	1.724	4.519	2.202	1.690	4.577
14373	chr8	82161966	82166495	+	0	NA	Intergenic	L1_Mus4|LINE|L1	238356	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	6.753	7.777	2.881	6.478	3.211	1.931	5.661	nan	3.965	8.143	4.174	3.183	7.034	7.661	7.917	9.545	5.422	7.142	4.934	3.368	2.459	7.298	3.396	3.843	10.038
7196	chr18	39552950	39558693	+	0	NA	Intergenic	Intergenic	-68576	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	5.594	1.117	0.749	2.612	2.086	1.082	4.812	6.068	3.735	3.143	2.100	1.755	6.845	5.105	4.830	5.482	4.358	5.726	0.781	0.584	0.375	0.931	0.530	0.581	6.553
4951	chr14	118578872	118580195	+	0	NA	intron (NM_001033336, intron 19 of 30)	intron (NM_001033336, intron 19 of 30)	12939	NR_105815	102465208		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	7.550	3.792	1.237	4.919	1.781	0.716	5.918	7.495	3.959	4.206	5.487	5.778	4.134	5.683	6.757	8.033	3.764	6.750	5.274	1.884	0.556	4.413	4.808	3.495	7.323
1405	chr10	69067442	69069943	+	0	NA	Intergenic	Intergenic	-139860	NM_001252636	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	1.487	0.594	0.313	1.490	2.459	1.684	2.132	0.896	2.426	2.223	0.468	0.286	3.698	4.198	2.770	3.925	2.292	2.163	1.112	0.471	0.486	0.785	1.042	1.006	2.681
11992	chr5	151009401	151011685	+	0	NA	Intergenic	Intergenic	57936	NM_013823	16591	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	0.977	0.533	0.479	nan	0.331	0.265	0.225	0.710	nan	0.419	0.295	0.866	0.169	0.329	0.297	nan	0.213	0.442	4.254	2.643	1.442	2.765	5.976	3.222	nan
9507	chr3	94170231	94172783	+	0	NA	Intergenic	Intergenic	6686	NM_001146107	100043188	Mm.304029	NM_001146107	ENSMUSG00000074424	Gm10696	ENSMUSG00000074424	predicted gene 10696	protein-coding	1.230	0.650	0.168	0.667	0.314	0.197	4.817	4.018	1.087	1.145	nan	1.040	3.829	3.049	2.885	3.924	3.205	2.229	0.789	0.569	0.331	0.952	0.818	0.489	1.418
8652	chr2	128294944	128296982	+	0	NA	Intergenic	Intergenic	133388	NR_028591	100043424	Mm.297222	NR_028589		Gm14005	OTTMUSG00000015351	predicted gene 14005	ncRNA	1.904	2.446	0.820	1.619	1.295	0.774	0.847	2.627	1.677	1.846	5.670	1.222	1.128	1.475	1.026	1.696	1.087	1.740	nan	0.902	0.700	0.763	0.529	0.227	2.349
4442	chr13	117821510	117824036	+	0	NA	intron (NM_010408, intron 3 of 7)	intron (NM_010408, intron 3 of 7)	-102762	NR_045508	71100	Mm.414841	NR_045508	ENSMUSG00000079048	4933413L06Rik	-	RIKEN cDNA 4933413L06 gene	ncRNA	4.124	6.679	6.131	1.930	1.833	1.024	1.695	1.613	2.487	1.943	3.073	0.931	1.371	2.703	2.087	2.290	1.938	2.714	0.816	1.681	0.843	0.398	0.589	0.362	2.692
7328	chr18	65202297	65204945	+	0	NA	intron (NM_001114386, intron 24 of 30)	intron (NM_001114386, intron 24 of 30)	-45240	NR_029600	387231		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	3.861	1.407	0.879	3.231	5.659	2.696	2.877	2.397	2.963	3.710	2.214	1.404	2.376	3.545	2.185	3.346	3.649	4.163	1.303	1.253	1.036	1.109	1.348	1.066	2.602
5161	chr15	51685236	51688817	+	0	NA	Intergenic	Intergenic	178435	NM_080635	68135	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	3.460	0.836	0.656	2.824	3.147	1.764	4.266	3.165	2.551	2.040	1.905	2.106	3.839	3.119	2.484	2.401	2.871	5.561	0.932	0.781	0.488	0.796	0.439	0.670	4.026
5822	chr16	15954590	15961529	+	0	NA	intron (NM_146068, intron 10 of 19)	intron (NM_146068, intron 10 of 19)	70773	NM_007679	12609	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	6.463	1.070	0.479	6.618	6.486	4.393	2.695	6.969	6.363	6.998	4.700	3.540	5.090	5.088	3.874	4.791	3.601	6.272	3.070	1.547	1.140	3.194	2.020	1.488	2.817
14471	chr8	94877336	94890710	+	0	NA	Intergenic	Intergenic	-7711	NM_053246	114255	Mm.203949	NM_053246	ENSMUSG00000040631	Dok4	-	docking protein 4	protein-coding	4.759	1.839	0.717	7.182	3.341	1.914	2.467	0.850	6.461	11.439	8.133	4.059	5.016	4.918	4.607	12.504	7.322	9.172	3.589	2.599	2.089	2.064	3.916	3.707	16.076
1729	chr10	111176176	111179224	+	0	NA	intron (NM_175489, intron 1 of 23)	intron (NM_175489, intron 1 of 23)	12898	NM_175489	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	nan	0.468	0.366	2.185	2.255	1.451	6.314	3.899	nan	5.784	4.536	2.676	5.277	5.811	5.627	5.711	4.358	5.389	1.199	1.100	0.729	1.444	0.622	0.731	5.817
6674	chr17	46623930	46627549	+	0	NA	intron (NM_175168, intron 1 of 19)	intron (NM_175168, intron 1 of 19)	3765	NM_175168	71461	Mm.181833	NM_175168	ENSMUSG00000023972	Ptk7	8430404F20Rik|chz|mPTK7/CCK4	PTK7 protein tyrosine kinase 7	protein-coding	0.712	0.798	0.649	0.424	0.816	0.340	1.067	0.471	0.380	0.652	0.348	0.222	0.336	nan	0.442	0.462	nan	0.355	2.021	2.252	1.683	1.517	6.865	5.294	0.559
9163	chr3	19845267	19846799	+	0	NA	Intergenic	Intergenic	-48838	NR_027985	70808	Mm.427103	NR_027985	ENSMUSG00000048106	4632415L05Rik	AI662792	RRS1 ribosome biogenesis regulator homolog pseudogene	pseudo	3.411	nan	0.479	2.355	1.992	0.707	5.397	2.884	3.360	3.979	2.665	2.544	6.316	4.402	5.307	5.017	6.038	5.463	1.576	1.480	0.330	3.172	1.119	0.848	2.416
9641	chr3	104441148	104446052	+	0	NA	Intergenic	L1M2|LINE|L1	68318	NM_001310698	269473	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	4.425	6.644	2.483	4.074	2.700	1.282	6.064	5.746	3.072	4.969	2.744	2.583	6.249	5.318	5.763	6.266	5.796	5.445	2.359	1.498	0.927	1.153	1.303	1.541	7.219
15372	chr9	88374943	88379205	+	0	NA	intron (NM_172926, intron 27 of 27)	(CA)n|Simple_repeat|Simple_repeat	49465	NM_011851	23959	Mm.244235	NM_011851	ENSMUSG00000032420	Nt5e	2210401F01Rik|5'-NT|AI447961|CD73|NT|Nt5|eNT	5' nucleotidase, ecto	protein-coding	6.996	8.365	3.583	6.374	4.648	2.633	5.591	5.687	4.219	10.351	5.522	3.146	5.357	8.487	6.261	7.437	5.072	5.978	5.227	5.434	4.025	4.869	4.834	5.354	11.232
8453	chr2	92022975	92026357	+	0	NA	promoter-TSS (NM_011957)	promoter-TSS (NM_011957)	-496	NM_011957	26427	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	14.509	11.670	5.215	10.388	7.853	5.371	11.270	10.844	5.461	14.877	7.588	5.056	8.993	14.311	9.146	11.971	11.593	9.231	6.762	6.496	6.170	5.509	7.715	9.876	17.568
3202	chr12	16875739	16878292	+	0	NA	Intergenic	Intergenic	-17963	NM_009072	19878	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	13.103	12.209	3.698	8.827	2.168	1.131	9.376	5.238	5.277	6.586	6.695	2.163	10.001	10.137	9.308	11.919	6.682	9.195	1.034	0.617	1.137	1.396	0.707	0.447	17.680
6550	chr17	33639834	33643066	+	0	NA	non-coding (NR_028279, exon 2 of 10)	non-coding (NR_028279, exon 2 of 10)	3355	NR_028279	378460	Mm.272606	NM_001002842	ENSMUSG00000032739	Pram1	AY665714	PML-RAR alpha-regulated adaptor molecule 1	protein-coding	5.161	1.261	1.058	3.888	3.919	2.837	5.866	3.691	3.166	4.660	1.535	0.696	4.777	6.314	3.174	5.724	6.390	3.645	0.491	1.733	1.138	0.302	0.753	0.672	4.451
356	chr1	82573195	82578002	+	0	NA	intron (NM_007735, intron 1 of 47)	intron (NM_007735, intron 1 of 47)	11251	NM_007735	12829	Mm.40253	NM_007735	ENSMUSG00000067158	Col4a4	E130010M05Rik|[a]4(IV)	collagen, type IV, alpha 4	protein-coding	8.450	0.427	0.318	2.811	5.375	3.215	4.673	2.786	3.365	4.950	1.209	0.365	5.681	7.297	3.552	nan	7.022	5.338	nan	nan	0.704	0.441	nan	0.491	nan
2396	chr11	70039826	70044137	+	0	NA	intron (NM_001109752, intron 14 of 19)	intron (NM_001109752, intron 14 of 19)	-12143	NM_001291131	11889	Mm.6559	NM_009714	ENSMUSG00000020884	Asgr1	ASGPR1|Asgr|Asgr-1|HL-1	asialoglycoprotein receptor 1	protein-coding	4.264	2.140	0.904	5.942	2.546	0.959	2.112	2.294	2.443	3.053	1.471	1.161	1.968	3.695	3.190	4.157	2.262	4.606	2.352	2.947	1.292	4.445	nan	1.862	4.393
14155	chr8	37135459	37136900	+	0	NA	Intergenic	Intergenic	-111941	NR_126063	414128	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	2.028	0.688	0.453	0.870	0.497	0.252	3.193	3.270	1.595	1.044	1.186	1.677	6.119	4.762	2.487	1.969	2.958	1.957	0.505	0.168	0.081	0.305	0.374	0.192	nan
5377	chr15	77103807	77108945	+	0	NA	intron (NM_053104, intron 5 of 13)	intron (NM_053104, intron 5 of 13)	21978	NR_108037	74303	Mm.444304	NR_108037	ENSMUSG00000097267	1700109K24Rik	4933425G21Rik	RIKEN cDNA 1700109K24 gene	ncRNA	6.199	nan	0.386	4.552	3.831	2.144	6.875	12.856	5.155	5.663	nan	2.254	10.008	10.499	7.083	7.324	6.055	6.911	2.811	1.996	1.295	3.468	2.789	1.776	4.359
4325	chr13	99724115	99725965	+	0	NA	Intergenic	Intergenic	175643	NM_013732	27220	Mm.75498	NM_013732	ENSMUSG00000021647	Cartpt	Cart	CART prepropeptide	protein-coding	5.215	2.228	2.522	2.412	3.034	1.712	3.960	4.779	3.031	3.274	2.663	1.067	3.716	4.172	2.864	3.558	2.692	2.216	2.475	2.679	1.300	1.397	3.081	2.397	4.021
807	chr1	163836977	163838947	+	0	NA	intron (NM_001305643, intron 10 of 19)	intron (NM_001305643, intron 10 of 19)	58379	NM_010629	16579	Mm.4651	NM_010629	ENSMUSG00000026585	Kifap3	KAP-3|KAP3|SMAP	kinesin-associated protein 3	protein-coding	2.896	10.172	4.648	nan	1.207	0.783	1.249	1.059	nan	1.735	8.391	2.346	nan	1.107	nan	1.568	1.539	1.633	1.464	1.306	0.708	nan	nan	0.847	nan
3897	chr13	24483476	24485992	+	0	NA	Intergenic	Intergenic	69612	NM_001284520	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	1.327	3.452	2.370	1.484	0.586	0.527	0.425	0.446	0.835	0.912	1.003	0.527	0.240	0.550	0.643	0.945	0.806	1.275	5.805	6.810	3.510	5.824	6.078	4.537	0.785
9751	chr3	121392239	121394557	+	0	NA	Intergenic	B2_Mm1t|SINE|B2	-33143	NM_028044	71994	Mm.275555	NM_028044	ENSMUSG00000053931	Cnn3	1600014M03Rik|C85854|Calpo3	calponin 3, acidic	protein-coding	1.798	0.470	0.314	2.108	2.690	1.175	4.177	2.103	2.732	2.257	0.930	2.778	5.083	4.923	2.642	nan	2.393	2.963	1.267	0.389	0.650	0.519	nan	0.575	1.768
2040	chr11	23983246	23990746	+	0	NA	Intergenic	Intergenic	-91060	NM_016707	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.401	8.531	4.432	nan	0.254	0.082	0.238	0.230	0.365	0.321	0.325	0.183	0.155	0.210	0.352	0.461	nan	0.448	0.467	0.599	0.228	0.312	0.294	0.148	0.373
2678	chr11	95200325	95201417	+	0	NA	Intergenic	Intergenic	-55070	NM_007867	13394	Mm.439766	NM_007867	ENSMUSG00000020871	Dlx4	Dlx-4|Dlx7	distal-less homeobox 4	protein-coding	2.772	8.093	3.487	3.355	2.928	1.415	1.377	1.747	3.259	2.990	1.827	0.819	2.577	4.242	3.354	4.963	4.477	3.581	1.559	nan	0.769	0.766	nan	nan	2.976
9850	chr3	143859142	143870932	+	0	NA	Intergenic	Intergenic	-152894	NR_040405	621809	Mm.360134	NR_040405	ENSMUSG00000105279	Gm6260	EG621809	predicted gene 6260	ncRNA	6.605	3.924	1.707	6.355	4.191	2.956	6.575	5.202	4.521	7.118	5.939	4.329	5.618	6.288	5.725	6.911	6.437	6.868	4.773	3.084	3.370	5.858	3.164	3.528	7.712
11678	chr5	122947791	122954136	+	0	NA	intron (NM_001003953, intron 6 of 22)	intron (NM_001003953, intron 6 of 22)	38136	NM_001003953	30841	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	6.285	7.583	3.263	6.516	4.955	3.721	6.462	5.681	5.440	11.473	5.054	3.798	6.689	9.948	7.773	7.576	6.271	6.835	nan	nan	3.310	4.684	nan	4.853	8.746
5979	chr16	30474895	30477258	+	0	NA	Intergenic	Intergenic	74502	NM_172614	224090	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	2.747	0.576	0.470	2.388	2.015	1.133	2.763	1.985	2.073	2.444	1.144	0.633	4.549	4.641	2.780	4.799	3.562	3.163	0.957	1.191	0.985	1.194	nan	0.662	3.464
5560	chr15	89026029	89027650	+	0	NA	intron (NM_031260, intron 22 of 26)	intron (NM_031260, intron 22 of 26)	-32887	NM_001002005	406218	Mm.483059	NM_001002005	ENSMUSG00000058441	Panx2	-	pannexin 2	protein-coding	10.156	14.304	4.452	10.677	4.838	2.942	11.053	14.400	5.273	11.168	5.899	2.856	9.899	11.135	11.823	10.471	8.540	10.384	6.461	3.279	3.819	7.304	5.381	5.872	15.690
4379	chr13	108466064	108467495	+	0	NA	Intergenic	PB1D10|SINE|Alu	150442	NM_178683	218581	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	7.557	1.959	0.407	6.459	2.479	1.333	3.701	3.763	2.787	4.920	2.152	1.899	6.096	4.488	4.743	6.736	2.540	5.436	1.598	0.861	0.838	2.464	0.946	0.269	9.701
13184	chr7	52780909	52785557	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-767517	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	7.432	5.469	3.324	6.765	9.454	6.702	7.309	9.113	4.551	6.154	4.354	3.295	6.893	8.493	6.088	6.153	7.062	5.590	2.884	3.897	3.839	2.976	3.866	3.949	7.098
10624	chr4	132194298	132196780	+	0	NA	intron (NM_145393, intron 4 of 4)	intron (NM_145393, intron 4 of 4)	16717	NM_145393	213541	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	4.798	5.728	1.973	5.836	3.319	2.573	3.763	4.368	3.049	4.156	2.896	2.012	2.614	4.346	nan	4.352	2.868	3.827	4.904	5.177	2.924	5.854	4.452	3.304	6.845
14030	chr8	12788145	12813215	+	0	NA	intron (NR_121603, intron 1 of 29)	intron (NR_121603, intron 1 of 29)	31239	NR_045775	100504249	Mm.441494	NR_045775	ENSMUSG00000084780	Gm15350	OTTMUSG00000020611	predicted gene 15350	ncRNA	6.880	1.292	0.447	6.262	4.095	1.825	6.289	5.940	6.065	7.810	1.953	0.941	10.042	8.472	9.089	10.997	6.523	9.378	1.532	1.158	0.848	2.380	1.189	0.819	12.313
9712	chr3	108853882	108855363	+	0	NA	3' UTR (NM_177091, exon 13 of 13)	3' UTR (NM_177091, exon 13 of 13)	-14120	NM_011504	20912	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	1.950	1.625	0.334	2.754	1.243	0.370	2.709	3.411	1.557	1.111	2.404	1.636	2.632	3.424	3.791	3.202	1.297	2.996	0.717	0.573	0.149	2.056	0.535	0.502	2.486
8350	chr2	72814588	72820184	+	0	NA	Intergenic	Intergenic	-3669	NR_102349	76218	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	9.592	13.303	4.660	11.301	4.688	5.061	8.654	9.725	7.522	17.673	8.494	4.997	10.606	9.637	9.109	11.581	10.056	10.873	6.449	2.187	4.933	5.988	3.730	6.851	15.565
1050	chr1	194965200	194969115	+	0	NA	intron (NR_033564, intron 2 of 4)	(TG)n|Simple_repeat|Simple_repeat	9802	NR_033564	320400	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	0.604	0.997	0.781	0.662	0.414	0.201	0.408	0.630	0.402	0.399	9.393	2.821	0.235	0.305	0.431	nan	0.610	0.522	0.747	0.673	0.545	0.759	nan	0.528	nan
7290	chr18	60903227	60914147	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-3553	NM_001038499	545260	Mm.20147	NM_001038499	ENSMUSG00000036412	Arsi	BC020108	arylsulfatase i	protein-coding	6.734	5.191	1.590	8.334	7.910	4.937	4.789	5.131	5.236	9.640	5.277	2.618	6.147	7.929	5.577	6.728	4.835	6.896	nan	2.160	1.959	nan	1.987	2.078	7.968
9937	chr4	11071167	11077738	+	0	NA	intron (NM_001085493, intron 1 of 8)	intron (NM_001085493, intron 1 of 8)	1753	NM_001085493	76947	Mm.275265	NM_001085493	ENSMUSG00000050323	Ndufaf6	2310030N02Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6	protein-coding	3.414	6.683	2.968	4.981	2.995	2.048	2.101	4.903	3.504	3.769	2.014	1.922	2.862	3.891	3.312	4.109	1.872	4.026	4.383	nan	2.225	8.625	2.888	2.227	3.612
6928	chr17	85018248	85021300	+	0	NA	intron (NM_001159497, intron 5 of 5)	intron (NM_001159497, intron 5 of 5)	-8573	NM_009205	20532	Mm.227176	NM_009205	ENSMUSG00000024131	Slc3a1	D2H|NBAT|NTAA|RBAT	solute carrier family 3, member 1	protein-coding	5.381	1.810	0.554	4.106	6.065	3.942	7.266	2.054	5.126	5.431	1.268	1.014	6.469	8.379	6.923	9.705	5.579	6.418	0.987	1.094	0.879	0.614	0.848	0.408	7.334
4054	chr13	44796460	44798529	+	0	NA	intron (NM_001205044, intron 2 of 18)	intron (NM_001205044, intron 2 of 18)	66223	NM_001205043	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	nan	0.632	0.478	nan	0.647	0.785	0.678	0.945	0.938	0.775	0.545	1.107	0.477	0.581	0.457	0.683	0.458	nan	4.032	4.663	5.882	4.138	6.588	8.366	0.723
10838	chr4	141726940	141730826	+	0	NA	Intergenic	B3|SINE|B2	-5464	NM_001017966	68817	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	3.246	0.895	0.428	2.451	0.919	0.425	3.752	3.121	1.826	1.830	2.865	1.115	3.068	3.378	3.676	4.608	2.633	3.246	1.363	0.794	0.546	1.615	nan	0.731	6.969
6162	chr16	78317670	78318932	+	0	NA	intron (NM_001276263, intron 1 of 2)	intron (NM_001276263, intron 1 of 2)	16630	NM_001276263	13052	Mm.66222	NM_009988	ENSMUSG00000022865	Cxadr	2610206D03Rik|AU016810|AW553441|CAR|MCAR|MCVADR	coxsackie virus and adenovirus receptor	protein-coding	5.226	0.812	0.358	2.295	4.112	2.410	4.979	6.892	3.991	4.250	2.893	3.157	4.862	4.346	4.258	5.275	3.564	5.236	nan	1.155	0.466	1.474	1.438	0.841	4.349
7587	chr19	12043926	12045477	+	0	NA	Intergenic	L2|LINE|L2	-7961	NM_146680	258675	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	3.363	0.965	0.464	2.245	1.524	0.406	1.618	4.334	nan	1.684	1.120	0.755	2.404	4.259	3.240	1.834	2.800	2.984	0.417	0.933	0.079	1.156	0.190	0.058	2.391
1031	chr1	193141352	193143490	+	0	NA	Intergenic	ID_B1|SINE|B4	-10691	NM_016851	54139	Mm.273695	NM_016851	ENSMUSG00000026638	Irf6	AI876454|E230028I05Rik|mirf6	interferon regulatory factor 6	protein-coding	6.178	3.252	1.335	6.449	4.195	1.700	4.818	3.717	2.519	7.737	2.734	1.346	4.209	5.289	5.134	nan	4.935	4.851	3.543	2.605	3.496	4.253	nan	3.745	9.021
15404	chr9	96682173	96683829	+	0	NA	Intergenic	Intergenic	48674	NM_175537	245007	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	3.088	1.456	0.716	1.165	2.600	1.060	2.804	2.854	1.066	2.516	3.445	1.100	1.239	3.395	2.267	1.170	0.826	1.163	1.524	0.709	0.762	0.886	1.244	1.050	1.522
14272	chr8	70798045	70804332	+	0	NA	Intergenic	Intergenic	3053	NR_106099	102466823		NR_106099	ENSMUSG00000099031	Mir7240	Gm27487|mmu-mir-7240	microRNA 7240	ncRNA	6.645	1.233	0.498	4.573	2.446	0.925	4.943	8.170	5.000	6.143	4.317	2.450	8.422	6.902	7.293	9.635	6.818	8.109	nan	1.162	0.812	2.358	1.787	1.019	10.221
8882	chr2	156963263	156965208	+	0	NA	intron (NM_013865, intron 2 of 15)	intron (NM_013865, intron 2 of 15)	27876	NM_013865	29812	Mm.279256	NM_013865	ENSMUSG00000027634	Ndrg3	4833415O14Rik|AI747193|Ndr3	N-myc downstream regulated gene 3	protein-coding	2.955	8.803	4.718	2.430	1.835	1.508	0.804	0.925	nan	1.928	5.849	0.685	nan	nan	1.488	1.538	1.636	nan	0.967	1.632	1.446	0.707	0.701	0.764	nan
5623	chr15	98698170	98703399	+	0	NA	Intergenic	IMPB_01|Satellite|Satellite	-7443	NM_153518	105833	Mm.26205	NM_153518	ENSMUSG00000003354	Ccdc65	4933417K04Rik|AI428139|AU020178|NYD-SP28	coiled-coil domain containing 65	protein-coding	12.204	12.457	3.036	10.958	4.859	2.570	12.745	13.978	6.138	13.436	7.275	4.264	12.050	12.218	11.941	12.571	10.260	10.606	5.364	3.090	2.829	5.370	4.061	3.941	17.670
2942	chr11	109347335	109351024	+	0	NA	intron (NR_027883, intron 1 of 1)	B4A|SINE|B4	2312	NR_027883	67927	Mm.394490	NR_027883	ENSMUSG00000099630	1700096J18Rik	-	RIKEN cDNA 1700096J18 gene	ncRNA	5.509	1.760	0.800	3.776	3.178	1.955	4.869	4.585	nan	6.607	1.984	2.338	4.975	6.214	6.520	6.381	5.449	5.477	3.675	2.550	1.608	nan	2.731	1.825	6.193
14937	chr9	31646633	31649123	+	0	NA	Intergenic	L1MCa|LINE|L1	-183640	NM_144936	235135	Mm.390134	NM_144936	ENSMUSG00000041737	Tmem45b	BC018222	transmembrane protein 45b	protein-coding	0.429	1.917	0.840	0.771	0.166	0.005	0.508	1.679	1.445	1.167	8.033	4.127	2.253	1.013	0.873	nan	0.437	1.752	1.035	0.717	0.402	1.258	1.215	0.641	0.783
13297	chr7	75272852	75278562	+	0	NA	intron (NM_153579, intron 1 of 12)	intron (NM_153579, intron 1 of 12)	32679	NM_001109753	64176	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	4.283	2.892	1.092	nan	1.563	0.736	2.811	5.583	1.769	2.825	3.855	2.580	4.124	4.045	3.032	nan	3.082	3.087	2.915	2.646	1.593	6.667	3.245	2.097	nan
10328	chr4	102492991	102495677	+	0	NA	intron (NM_019840, intron 2 of 14)	(CTGTG)n|Simple_repeat|Simple_repeat	-75726	NM_001177980	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	1.973	nan	0.482	5.105	1.072	0.324	0.528	0.763	nan	nan	0.588	0.522	0.344	1.182	nan	1.332	0.460	2.210	0.567	0.828	0.597	nan	0.447	0.178	1.204
454	chr1	93309131	93312433	+	0	NA	exon (NM_080850, exon 17 of 18)	exon (NM_080850, exon 17 of 18)	-4903	NM_001310756	69821	Mm.52809	NM_178051	ENSMUSG00000026273	Mterf4	1810059A23Rik|4933412H03Rik|Mterfd2	mitochondrial transcription termination factor 4	protein-coding	7.896	8.877	3.399	5.401	2.179	1.778	5.718	nan	3.689	6.511	3.889	3.205	4.168	6.147	5.566	8.184	6.311	5.625	9.447	7.068	5.935	8.553	9.415	8.478	10.400
4845	chr14	75301590	75307556	+	0	NA	intron (NM_026083, intron 4 of 18)	intron (NM_026083, intron 4 of 18)	20200	NM_026083	67302	Mm.74704	NM_026083	ENSMUSG00000022000	Zc3h13	2600010B19Rik|3110050K21Rik|4930570G11Rik|C87618	zinc finger CCCH type containing 13	protein-coding	3.451	4.408	2.438	3.287	3.154	1.519	1.395	2.650	2.782	3.030	3.012	1.991	1.480	nan	2.325	2.563	1.864	3.049	2.216	2.944	1.573	4.976	1.685	1.117	3.073
11319	chr5	67187447	67194828	+	0	NA	Intergenic	Intergenic	-69428	NM_001285452	67878	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	3.889	0.788	0.362	3.622	3.516	1.791	2.757	0.976	3.727	3.593	0.615	0.799	1.586	2.995	1.712	4.957	3.051	5.410	5.478	3.069	2.273	nan	7.151	4.056	3.632
10411	chr4	116860715	116864735	+	0	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	-14677	NM_001029912	74464	Mm.218946	NM_001029912	ENSMUSG00000033948	Zswim5	4933426E21Rik|AI503093|mKIAA1511	zinc finger SWIM-type containing 5	protein-coding	8.019	11.348	7.559	7.335	8.239	5.531	5.978	7.797	6.270	6.297	4.323	3.897	8.099	9.113	6.411	7.814	8.476	7.752	5.913	2.921	2.521	2.631	3.556	3.336	6.510
8242	chr2	51827570	51828967	+	0	NA	Intergenic	Lx7|LINE|L1	-96259	NR_040639	433426	Mm.244381	NR_040639	ENSMUSG00000085014	Gm13490	OTTMUSG00000012405	predicted gene 13490	ncRNA	6.655	13.896	5.586	13.874	4.862	3.302	7.908	7.198	4.101	8.320	5.979	4.401	3.736	4.064	8.483	12.321	8.623	6.501	2.187	1.979	0.885	2.249	1.270	1.897	6.247
634	chr1	135042988	135044589	+	0	NA	intron (NM_001033409, intron 4 of 17)	intron (NM_001033409, intron 4 of 17)	61488	NM_001033409	329252	Mm.279594	NM_001033409	ENSMUSG00000042793	Lgr6	A530037C04Rik|D830026M09	leucine-rich repeat-containing G protein-coupled receptor 6	protein-coding	6.814	1.595	1.554	1.495	2.557	2.566	5.166	4.387	1.118	1.531	1.675	2.143	3.895	3.070	1.817	3.241	5.172	2.022	3.288	2.240	2.509	1.869	5.165	5.498	3.617
15611	chr9	121288885	121295793	+	0	NA	Intergenic	Intergenic	-15167	NM_177589	209012	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	4.110	2.829	1.307	3.204	1.533	0.604	3.947	7.169	1.836	2.721	1.506	0.845	4.400	6.343	4.354	5.434	3.430	3.342	0.947	1.006	0.579	0.947	nan	0.412	4.851
5455	chr15	80895413	80897844	+	0	NA	intron (NM_144812, intron 14 of 24)	intron (NM_144812, intron 14 of 24)	-43411	NR_039573	100628612		NR_039573	ENSMUSG00000092868	Mir5113	mir-5113|mmu-mir-5113|mu-mir-5113	microRNA 5113	ncRNA	4.527	nan	0.192	nan	0.697	0.266	5.838	6.398	2.086	2.447	nan	0.628	5.941	4.203	7.316	5.615	4.420	4.199	1.588	0.814	0.279	nan	0.911	0.635	5.890
6700	chr17	47747459	47749218	+	0	NA	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	10407	NM_001161723	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	8.501	10.070	3.558	7.738	5.732	2.863	8.052	5.727	4.209	5.911	4.339	2.459	4.980	7.378	7.785	9.777	7.446	6.401	3.741	3.956	2.461	5.112	4.555	2.941	11.903
14954	chr9	32731761	32736138	+	0	NA	exon (NM_001038642, exon 5 of 7)	exon (NM_001038642, exon 5 of 7)	37907	NM_001038642	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	1.847	6.102	1.841	1.929	0.794	0.394	0.410	0.428	1.426	1.134	0.742	0.649	0.536	0.646	1.067	nan	0.665	1.571	1.423	1.530	0.625	1.018	1.699	0.935	0.838
2551	chr11	83705153	83707946	+	0	NA	TTS (NM_001081957)	TTS (NM_001081957)	-2455	NM_007969	14038	Mm.1650	NM_007969	ENSMUSG00000000983	Wfdc18	Expi|Kal1|WDNM1	WAP four-disulfide core domain 18	protein-coding	2.400	0.625	0.326	nan	4.857	3.148	2.892	3.505	3.078	4.002	1.960	1.627	3.337	5.384	4.072	5.854	2.512	3.924	0.486	0.430	0.398	nan	0.340	0.375	3.395
11752	chr5	130499140	130500810	+	0	NA	intron (NM_021371, intron 1 of 5)	intron (NM_021371, intron 1 of 5)	51183	NM_021371	140904	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	6.094	5.843	3.047	5.681	4.383	4.072	4.302	6.384	3.470	3.213	3.079	2.506	3.012	6.352	5.075	6.183	4.825	4.181	nan	2.480	3.855	1.774	nan	3.731	6.114
13721	chr7	130465335	130467588	+	0	NA	intron (NM_001029895, intron 9 of 11)	intron (NM_001029895, intron 9 of 11)	53119	NM_001136054	11907	Mm.216321	NM_013799	ENSMUSG00000030850	Ate1	AI225793|AW547406	arginyltransferase 1	protein-coding	5.314	2.866	0.703	3.783	2.530	1.261	5.029	7.529	3.837	3.619	2.214	1.459	6.349	5.562	7.640	6.811	4.755	6.427	1.610	0.345	0.544	0.552	0.688	0.380	6.589
12673	chr6	120901150	120907817	+	0	NA	intron (NM_007544, intron 1 of 5)	intron (NM_007544, intron 1 of 5)	12337	NM_007544	12122	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	1.278	12.254	4.357	1.144	0.434	0.222	0.629	1.285	0.882	0.883	1.342	0.730	0.457	nan	0.929	1.262	0.686	1.160	0.701	0.408	0.367	0.700	nan	0.289	1.182
3324	chr12	53603230	53606671	+	0	NA	intron (NM_013780, intron 3 of 11)	intron (NM_013780, intron 3 of 11)	356273	NM_013780	27386	Mm.247044	NM_013780	ENSMUSG00000021010	Npas3	4930423H22Rik|bHLHe12	neuronal PAS domain protein 3	protein-coding	11.188	6.517	2.360	10.144	4.642	3.980	9.529	8.118	6.220	12.496	7.402	4.098	9.355	10.370	10.944	11.906	10.011	10.894	5.680	1.882	2.293	5.479	3.229	4.244	16.799
3741	chr12	112800427	112801771	+	0	NA	Intergenic	Intergenic	-7876	NM_145450	217887	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Flj20080	cDNA sequence BC022687	protein-coding	4.765	0.764	0.775	2.017	2.341	1.673	3.895	1.814	nan	nan	1.668	1.753	3.125	4.905	2.545	2.500	1.881	3.660	1.799	1.283	0.884	1.116	1.813	1.647	3.786
5577	chr15	93348010	93350599	+	0	NA	Intergenic	RLTR31_Mm|LTR|ERVK	-12369	NM_024189	67057	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	8.856	2.380	0.956	7.883	2.193	1.224	3.134	2.546	3.252	5.585	1.493	0.822	3.670	3.708	3.891	5.061	4.596	6.192	1.073	1.238	1.089	2.169	1.440	1.850	9.712
4813	chr14	70222741	70225468	+	0	NA	intron (NM_001304991, intron 13 of 14)	intron (NM_001304991, intron 13 of 14)	-16433	NM_011366	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	5.176	10.844	7.059	0.859	0.978	0.717	7.242	6.392	3.158	4.097	3.256	1.900	4.811	5.053	4.364	5.851	5.821	3.213	0.360	nan	0.421	0.406	0.317	0.177	2.547
8822	chr2	152914902	152918643	+	0	NA	intron (NM_001081044, intron 5 of 11)	intron (NM_001081044, intron 5 of 11)	5420	NM_001081044	228785	Mm.250604	NM_001081044	ENSMUSG00000027470	Mylk2	9830004H17Rik|BB138278	myosin, light polypeptide kinase 2, skeletal muscle	protein-coding	6.910	3.632	1.861	2.477	1.389	1.182	3.224	6.607	1.494	2.091	1.941	0.408	2.916	3.012	2.834	4.213	6.873	2.873	nan	1.059	0.738	0.366	0.421	0.519	5.280
12610	chr6	114850886	114852545	+	0	NA	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	70037	NM_177683	232334	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	7.239	1.940	0.686	6.455	3.298	2.042	3.763	4.105	4.698	4.890	3.340	2.050	3.641	5.299	6.028	7.810	6.849	8.027	3.545	2.607	1.345	4.745	nan	2.916	7.559
15165	chr9	61844885	61848818	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	67659	NM_018853	56040	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	1.610	0.709	0.578	0.994	0.617	0.275	4.008	5.044	2.140	1.822	3.449	2.418	3.335	3.362	3.911	3.924	2.325	3.815	1.374	0.666	0.699	1.282	1.026	0.624	3.258
6657	chr17	45896247	45897540	+	0	NA	Intergenic	Intergenic	128270	NM_001110267	22339	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	1.068	0.916	1.408	1.810	4.550	2.638	2.805	2.404	3.127	2.660	1.957	2.422	2.455	4.157	2.331	2.263	nan	3.072	0.776	1.116	1.063	0.916	0.379	0.175	1.652
325	chr1	75743601	75748232	+	0	NA	Intergenic	Intergenic	199650	NM_009208	20536	Mm.5053	NM_009208	ENSMUSG00000006576	Slc4a3	A930038D23Rik|Ae3	solute carrier family 4 (anion exchanger), member 3	protein-coding	5.355	0.420	0.199	2.194	3.361	1.615	4.623	1.776	3.408	7.858	0.486	0.634	6.021	8.566	4.792	6.695	5.702	nan	nan	nan	0.185	0.354	nan	0.198	nan
12531	chr6	99139869	99144698	+	0	NA	intron (NM_001347345, intron 5 of 19)	intron (NM_001347345, intron 5 of 19)	-113985	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	2.975	1.923	1.478	2.768	3.165	1.983	3.602	5.853	5.299	5.611	2.002	3.672	4.018	6.167	nan	nan	3.164	4.259	nan	nan	0.635	1.812	0.966	0.553	2.460
7263	chr18	56895251	56897599	+	0	NA	intron (NM_177115, intron 1 of 4)	intron (NM_177115, intron 1 of 4)	29123	NM_177115	320253	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	4.619	2.747	2.212	3.038	5.288	4.274	2.453	5.621	3.340	3.917	2.483	1.525	5.042	3.669	3.001	3.235	2.056	3.257	2.124	1.737	1.584	2.657	1.468	1.146	3.475
13421	chr7	95578094	95579576	+	0	NA	Intergenic	Intergenic	-592409	NM_001310762	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	6.662	1.465	0.460	6.676	2.541	1.531	6.935	9.657	4.614	5.625	8.327	3.845	8.195	8.413	9.510	9.098	6.877	8.027	nan	0.918	0.791	1.272	0.489	0.496	11.657
13243	chr7	71076007	71085532	+	0	NA	Intergenic	Intergenic	-714023	NM_183261	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	nan	12.196	3.776	11.682	4.697	3.732	5.182	9.626	5.628	11.731	6.767	3.002	7.143	10.245	7.354	8.476	5.436	8.611	3.920	1.836	2.946	4.067	2.680	3.495	11.708
15079	chr9	51075715	51085585	+	0	NA	TTS (NM_177702)	TTS (NM_177702)	-3556	NM_001033534	244864	Mm.335152	NM_001033534	ENSMUSG00000060594	Layn	E030012M19Rik|Gm511	layilin	protein-coding	2.760	1.026	0.700	2.087	1.145	0.525	1.269	1.688	2.072	1.920	3.746	4.440	2.072	0.907	nan	nan	3.459	2.022	7.879	3.017	1.890	nan	3.564	2.871	nan
14571	chr8	109153219	109171687	+	0	NA	intron (NR_126329, intron 2 of 9)	intron (NR_126329, intron 2 of 9)	87231	NR_126329	628686	Mm.203332	NR_126329	ENSMUSG00000097393	D030068K23Rik	-	RIKEN cDNA D030068K23 gene	ncRNA	4.264	1.076	0.615	3.656	3.695	2.643	3.601	4.051	4.263	4.333	3.323	2.604	5.718	6.099	5.343	7.463	4.401	5.541	4.806	2.679	2.757	nan	3.622	3.433	6.074
5198	chr15	58154609	58157869	+	0	NA	TTS (NM_001326599)	TTS (NM_001326599)	14873	NM_001326599	76773	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	8.809	1.343	0.650	4.711	4.779	2.517	8.593	9.811	3.513	nan	4.881	2.478	8.516	7.797	4.690	5.509	7.109	6.375	6.365	3.206	3.379	4.689	8.340	8.394	4.564
1233	chr10	41122512	41124349	+	0	NA	Intergenic	Intergenic	-51846	NM_199058	140741	Mm.290693	NM_199058	ENSMUSG00000046922	Gpr6	AI852874|Gm233	G protein-coupled receptor 6	protein-coding	2.497	0.879	0.283	1.836	1.020	0.536	1.114	0.932	2.748	3.651	0.551	0.255	2.264	4.681	2.276	3.172	2.001	2.340	0.826	0.320	0.171	0.840	0.373	0.141	3.166
12104	chr6	29996684	29999019	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	12522	NR_040263	76419	Mm.84522	NR_040263	ENSMUSG00000045709	Smkr-ps	1700023L04Rik	smal lysine rich protein 1, pseudogene	ncRNA	10.872	19.512	6.256	15.171	6.854	6.065	12.786	11.737	7.457	20.855	9.354	6.178	12.106	13.348	14.221	16.002	9.842	14.557	7.556	3.306	5.611	8.188	4.962	6.919	20.082
7563	chr19	10299164	10301596	+	0	NA	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	4497	NM_198114	269060	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	2.604	0.528	0.540	0.908	0.838	0.279	10.298	6.732	nan	1.044	0.203	0.881	3.981	4.385	3.962	4.631	3.696	2.297	2.203	1.886	2.245	5.177	2.583	2.910	1.402
1162	chr10	20319689	20322071	+	0	NA	intron (NM_001025392, intron 2 of 12)	intron (NM_001025392, intron 2 of 12)	8411	NM_001025393	72567	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	2.551	0.471	0.821	1.396	2.327	0.931	1.115	1.571	2.253	2.098	0.251	0.429	1.896	nan	2.801	3.357	4.058	1.877	0.561	1.637	0.566	0.596	1.094	0.470	nan
211	chr1	58775623	58786416	+	0	NA	Intergenic	L1_Mus4|LINE|L1	-14355	NM_009812	12370	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	6.848	12.307	5.809	5.628	5.188	2.757	1.849	3.381	4.107	3.893	2.954	2.095	2.538	4.926	3.566	nan	3.238	4.274	1.079	1.863	0.855	0.898	0.914	0.509	3.818
2831	chr11	102327508	102329662	+	0	NA	Intergenic	Intergenic	-9489	NM_011551	21429	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	3.468	nan	0.753	3.708	3.212	1.907	3.581	3.019	1.764	3.165	2.177	1.332	3.258	4.694	4.545	4.714	3.242	2.981	2.049	nan	2.761	4.266	nan	nan	4.882
13167	chr7	52156177	52158197	+	0	NA	Intergenic	Intergenic	-141471	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	2.583	4.971	1.093	3.514	1.016	0.398	4.050	4.910	2.483	3.589	0.885	0.577	4.693	4.955	5.494	5.522	2.374	4.878	3.890	1.553	1.187	2.695	2.281	1.163	7.037
6188	chr16	90400932	90403284	+	0	NA	intron (NM_015755, intron 1 of 10)	intron (NM_015755, intron 1 of 10)	15711	NM_015755	26559	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	6.180	nan	0.414	0.657	0.666	0.347	6.137	9.462	0.589	0.872	3.545	1.076	3.495	5.131	4.141	4.663	4.819	nan	0.711	0.331	0.261	nan	0.735	0.685	4.341
7192	chr18	39088090	39089834	+	0	NA	intron (NM_175164, intron 1 of 22)	MIR|SINE|MIR	95817	NM_175164	71302	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	10.469	2.880	0.832	9.847	4.003	1.531	11.813	8.159	6.631	8.271	6.868	2.489	11.605	13.005	10.786	11.929	5.691	10.202	1.443	1.528	0.799	2.956	0.983	0.482	13.693
3315	chr12	52446611	52450008	+	0	NA	Intergenic	Intergenic	32300	NR_136881	102638611	Mm.363799	NR_136881		Gm35135	-	predicted gene, 35135	ncRNA	11.725	6.206	2.345	5.929	4.353	2.723	7.489	6.994	4.932	6.726	6.267	3.910	9.612	10.057	8.300	8.373	9.262	7.671	4.453	1.741	2.079	5.166	2.311	2.394	10.460
5404	chr15	78409990	78412472	+	0	NA	intron (NM_001162493, intron 2 of 2)	intron (NM_001162493, intron 2 of 2)	4127	NM_138670	246221	Mm.294215	NM_138670	ENSMUSG00000071711	Mpst	Mst	mercaptopyruvate sulfurtransferase	protein-coding	13.046	12.640	5.027	6.765	4.749	2.375	11.526	19.699	6.028	6.720	3.632	3.925	9.643	10.973	9.101	9.088	11.815	7.716	7.780	6.069	4.815	7.951	8.037	5.078	10.208
4946	chr14	106320864	106322957	+	0	NA	Intergenic	Intergenic	164610	NR_045938	73631	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	3.248	0.562	0.470	1.832	2.020	1.251	4.032	4.641	2.354	1.912	3.191	2.279	3.919	3.594	4.658	3.874	2.009	2.714	1.174	0.949	0.515	1.379	0.467	0.291	3.350
11883	chr5	140266817	140274409	+	0	NA	intron (NM_010752, intron 9 of 17)	B1_Mus1|SINE|Alu	50939	NM_010752	17120	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	6.969	5.274	1.427	10.471	4.394	1.978	5.677	7.003	4.937	6.192	4.387	2.360	4.924	8.259	7.653	9.272	3.825	8.223	2.225	1.291	1.001	3.269	nan	1.198	8.941
14808	chr8	129126625	129128604	+	0	NA	intron (NM_001168369, intron 5 of 14)	(TTTTG)n|Simple_repeat|Simple_repeat	60480	NM_001168369	75453	Mm.286964	NM_029292	ENSMUSG00000056018	Ccdc7b	1700008F21Rik	coiled-coil domain containing 7B	protein-coding	12.126	nan	1.332	nan	3.467	1.836	4.242	7.365	5.601	7.357	6.259	2.584	4.721	5.077	nan	9.305	7.372	8.084	nan	3.491	1.784	nan	1.883	nan	9.217
14837	chr8	130986501	131021884	+	0	NA	Intergenic	Intergenic	1740562	NR_144501	102635552		NM_001346808		Gm32856	-	predicted gene, 32856	protein-coding	4.926	nan	0.766	nan	2.475	1.447	nan	nan	3.900	3.941	1.095	1.224	4.667	2.978	nan	6.943	4.408	nan	nan	1.141	0.726	nan	0.904	nan	nan
389	chr1	88254797	88257477	+	0	NA	exon (NM_001281466, exon 35 of 42)	exon (NM_001281466, exon 35 of 42)	13271	NR_040291	78605	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	9.328	14.515	4.464	7.270	5.233	3.883	8.905	6.942	3.677	7.784	7.320	4.477	6.497	7.313	8.095	12.980	7.359	7.015	4.714	3.385	3.831	6.296	3.562	4.632	12.364
12041	chr6	8363861	8367380	+	0	NA	intron (NM_001302353, intron 2 of 4)	RLTR27|LTR|ERVK	106332	NM_001302353	100036521	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039|OTTMUSG00000029336	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	2.369	0.810	0.886	2.273	1.053	0.742	4.864	4.360	2.883	2.345	0.629	0.810	2.990	4.282	3.216	6.398	5.235	3.356	0.908	0.593	0.427	1.169	0.559	0.578	nan
14720	chr8	124846818	124850282	+	0	NA	intron (NM_025615, intron 2 of 6)	MERVL-int|LTR|ERVL	14479	NM_025615	66523	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	3.370	1.787	0.685	2.420	1.441	0.640	3.907	5.029	2.085	2.712	0.690	0.920	4.287	4.521	4.322	4.926	3.913	3.972	nan	0.688	0.952	nan	1.297	nan	6.939
3525	chr12	81743914	81748318	+	0	NA	intron (NM_001174107, intron 2 of 10)	intron (NM_001174107, intron 2 of 10)	35054	NM_177395	338372	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	8.868	6.540	1.770	5.080	3.426	2.598	6.590	7.767	4.418	4.584	4.201	2.961	7.348	7.212	7.781	9.249	7.810	6.929	3.830	2.291	1.540	4.130	2.312	2.507	11.378
3207	chr12	17276995	17279534	+	0	NA	intron (NM_027959, intron 5 of 12)	intron (NM_027959, intron 5 of 12)	11669	NM_027959	71853	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	3.448	2.043	1.342	1.545	2.247	1.548	4.795	2.910	2.014	2.469	0.859	0.668	4.875	4.631	4.137	4.691	4.030	3.264	0.564	0.514	0.235	0.506	0.206	0.600	4.383
14787	chr8	128012655	128014150	+	0	NA	Intergenic	MTA_Mm-int|LTR|ERVL-MaLR	264823	NR_105822	102465212		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	2.204	1.346	0.161	1.879	0.779	0.539	nan	nan	1.830	2.493	0.940	0.892	2.253	4.036	2.875	3.335	1.249	nan	nan	0.597	0.112	nan	0.858	nan	4.539
10081	chr4	49672011	49678583	+	0	NA	intron (NM_001033351, intron 6 of 8)	intron (NM_001033351, intron 6 of 8)	6686	NM_001004025	19059	Mm.46125	NM_001004025	ENSMUSG00000028310	Ppp3r2	CaNB2|CnB2	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type II)	protein-coding	4.120	nan	0.276	3.027	2.026	0.779	4.365	2.809	6.537	7.200	0.660	0.562	6.089	6.983	6.782	9.564	3.784	7.297	0.725	0.585	0.230	nan	0.463	0.217	8.004
13302	chr7	75870572	75872237	+	0	NA	intron (NM_029652, intron 2 of 2)	intron (NM_029652, intron 2 of 2)	23066	NM_029652	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	2.099	0.546	1.068	nan	0.426	0.342	2.546	4.518	1.310	0.797	4.838	2.975	3.286	1.922	1.324	nan	2.855	2.211	1.009	1.050	0.732	0.844	1.391	1.253	1.303
12400	chr6	87049388	87052693	+	0	NA	intron (NM_013528, intron 2 of 18)	intron (NM_013528, intron 2 of 18)	8194	NM_013528	14583	Mm.19893	NM_013528	ENSMUSG00000029992	Gfpt1	2810423A18Rik|AI324119|AI449986|GFA|GFAT|GFAT1|GFAT1m|Gfpt	glutamine fructose-6-phosphate transaminase 1	protein-coding	3.636	1.991	0.387	5.378	2.269	1.073	7.614	3.704	2.719	4.262	1.230	1.310	7.215	6.300	6.889	11.863	5.579	5.114	nan	0.893	0.317	1.070	0.762	0.594	7.642
6649	chr17	45700406	45701821	+	0	NA	Intergenic	Intergenic	14741	NM_026732	68463	Mm.379158	NM_026732	ENSMUSG00000023939	Mrpl14	1110006I11Rik|AI846816|MRP-L32|Rpml32	mitochondrial ribosomal protein L14	protein-coding	5.774	17.178	7.108	6.945	3.528	2.677	6.486	5.766	3.145	8.255	5.734	2.467	3.368	5.514	7.022	8.318	4.927	5.558	4.506	4.033	5.401	4.861	3.461	4.372	12.663
15605	chr9	121183421	121186179	+	0	NA	intron (NM_177589, intron 21 of 36)	L1MDa|LINE|L1	92372	NM_177589	209012	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	1.054	0.801	0.789	0.911	0.672	0.490	0.710	0.592	0.585	0.703	0.662	0.734	0.488	0.793	0.722	0.912	0.724	0.652	3.844	3.940	2.736	3.643	5.430	3.624	0.922
7023	chr18	11755003	11759068	+	0	NA	Intergenic	L1_Mus3|LINE|L1	-82239	NM_022021	63955	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	nan	0.484	0.322	0.302	0.234	0.089	0.328	0.703	0.328	0.416	5.358	1.395	nan	0.322	0.407	0.529	0.600	0.733	0.474	0.248	0.151	0.266	0.214	0.216	0.390
966	chr1	183459258	183461783	+	0	NA	Intergenic	Intergenic	41272	NM_001308052	78772	Mm.29003	NM_030175	ENSMUSG00000053461	Hhipl2	4930507C10Rik|AW208802|Hhip3	hedgehog interacting protein-like 2	protein-coding	0.396	0.997	0.528	0.833	0.341	0.146	0.350	0.631	0.844	0.986	5.565	2.078	0.352	0.509	0.384	0.877	0.436	0.908	0.785	1.016	0.728	1.432	0.903	0.312	0.579
2216	chr11	54678798	54680917	+	0	NA	intron (NM_175258, intron 23 of 27)	B3|SINE|B2	83711	NM_001252497	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	6.029	11.670	3.340	8.736	2.688	2.204	5.097	5.444	6.380	10.926	4.919	4.278	5.927	6.774	7.900	9.280	5.953	8.875	6.565	3.060	2.435	7.478	3.304	4.278	9.577
2314	chr11	62454359	62456560	+	0	NA	intron (NM_177229, intron 1 of 8)	intron (NM_177229, intron 1 of 8)	1873	NM_177229	20185	Mm.271814	NM_011308	ENSMUSG00000018501	Ncor1	5730405M06Rik|A230020K14Rik|N-CoR|RIP13|Rxrip13|mKIAA1047	nuclear receptor co-repressor 1	protein-coding	4.158	1.743	1.319	3.235	2.549	1.417	3.215	3.976	3.692	3.294	0.894	1.681	3.531	4.752	4.170	4.774	4.579	3.997	3.692	3.838	3.034	4.120	2.264	2.590	3.776
13682	chr7	125420070	125422046	+	0	NA	Intergenic	Intergenic	-23562	NM_029842	77035	Mm.307239	NM_029842	ENSMUSG00000030752	Kdm8	3110005O21Rik|Jmjd5	lysine (K)-specific demethylase 8	protein-coding	5.897	12.568	6.510	5.767	7.399	5.139	4.000	7.167	4.096	4.468	3.276	2.351	5.348	6.718	4.604	5.317	5.524	6.327	0.828	1.512	1.331	1.246	1.114	0.848	5.298
15244	chr9	67456101	67458077	+	0	NA	intron (NM_001081242, intron 2 of 57)	intron (NM_001081242, intron 2 of 57)	102614	NM_001081242	70549	Mm.33645	NM_027458	ENSMUSG00000052698	Tln2	5730421P04Rik|AI507121|AI787438|AL118320|mKIAA0320	talin 2	protein-coding	1.798	0.606	0.185	3.043	1.961	0.792	1.347	1.831	3.478	3.287	1.800	0.671	3.834	3.942	3.157	2.110	0.777	4.784	nan	0.860	0.612	0.761	0.295	0.483	4.659
218	chr1	59536832	59546855	+	0	NA	intron (NM_001013771, intron 3 of 19)	intron (NM_001013771, intron 3 of 19)	25579	NM_001013771	381260	Mm.486706	NM_001013771	ENSMUSG00000047361	Gm973	AW554518	predicted gene 973	protein-coding	9.394	2.445	1.129	6.835	3.615	2.809	9.719	5.502	4.748	8.371	2.948	2.182	9.167	9.300	9.295	14.100	9.632	8.984	0.880	1.085	1.015	0.994	0.699	0.733	15.094
5918	chr16	23279459	23304745	+	0	NA	intron (NM_001252506, intron 1 of 6)	intron (NM_001252506, intron 1 of 6)	1632	NM_001252506	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	2.546	10.489	5.696	1.997	1.926	1.071	3.020	2.623	2.229	2.597	1.759	0.954	nan	3.387	3.021	nan	2.626	2.961	0.811	0.931	0.799	0.781	nan	0.610	2.703
2345	chr11	67884640	67886399	+	0	NA	intron (NM_001291049, intron 8 of 14)	intron (NM_001291049, intron 8 of 14)	36634	NM_001291049	216835	Mm.158885	NM_173754	ENSMUSG00000020905	Usp43	-	ubiquitin specific peptidase 43	protein-coding	1.892	0.655	0.509	2.002	2.885	1.561	2.316	0.988	1.781	1.884	0.317	0.886	2.214	4.581	3.666	1.795	1.757	1.783	2.250	1.877	0.766	1.274	nan	1.357	2.087
14933	chr9	31018535	31020149	+	0	NA	Intergenic	Intergenic	-11302	NM_001115130	235132	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	5.897	7.025	1.299	9.639	1.366	1.618	4.314	5.395	3.879	13.681	4.576	3.479	3.755	3.966	7.209	9.384	2.851	8.454	4.085	1.405	2.527	6.837	2.302	4.482	15.622
6902	chr17	84245116	84251512	+	0	NA	intron (NM_183021, intron 31 of 37)	intron (NM_183021, intron 31 of 37)	-60367	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	1.562	14.743	6.795	1.584	0.627	0.432	0.657	0.931	nan	1.413	1.142	0.595	0.571	0.652	1.267	1.791	1.218	1.621	0.464	0.968	0.731	0.456	0.330	0.410	1.896
3124	chr11	120719058	120720857	+	0	NA	exon (NM_153545, exon 16 of 18)	exon (NM_153545, exon 16 of 18)	-1511	NM_133223	170758	Mm.34008	NM_133223	ENSMUSG00000018012	Rac3	Rac1B	RAS-related C3 botulinum substrate 3	protein-coding	1.817	nan	0.849	1.144	2.595	2.214	2.264	2.499	2.510	2.637	0.844	0.664	2.851	4.148	2.147	2.244	3.022	2.218	0.895	nan	1.195	1.023	0.712	1.001	1.602
14241	chr8	60130411	60132247	+	0	NA	Intergenic	B4A|SINE|B4	305680	NR_126087	75017	Mm.60775	NR_126087	ENSMUSG00000110406	4930470O06Rik	-	RIKEN cDNA 4930470O06 gene	ncRNA	9.333	13.294	4.178	8.669	2.894	3.003	8.474	10.271	4.453	14.251	6.709	3.711	8.119	6.595	8.638	10.701	6.842	8.092	5.138	2.980	6.212	7.702	4.425	8.079	12.338
5261	chr15	63920557	63924976	+	0	NA	intron (NR_029414, intron 7 of 10)	intron (NR_029414, intron 7 of 10)	8305	NR_029414	74460	Mm.390801	NR_029414	ENSMUSG00000100127	Gsdmcl-ps	4933426G20Rik	gasdermin C-like, pseudogene	pseudo	5.300	2.063	0.885	3.635	1.782	1.778	3.012	6.039	3.328	3.684	1.646	0.706	3.862	5.286	4.606	3.877	3.500	4.047	0.741	0.506	0.444	0.832	0.517	0.455	4.876
12113	chr6	30597373	30599639	+	0	NA	Intergenic	Intergenic	-12504	NM_144537	74649	Mm.159276	NM_144537	ENSMUSG00000029788	Cpa5	4930430M09Rik	carboxypeptidase A5	protein-coding	0.765	0.445	0.646	0.655	0.578	0.361	0.781	0.603	0.568	0.488	0.758	0.489	0.315	0.365	0.228	nan	1.103	nan	2.443	6.728	5.319	5.332	3.106	2.268	0.503
10244	chr4	87677310	87680701	+	0	NA	Intergenic	L1Md_T|LINE|L1	127318	NM_001286158	70122	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	5.850	9.262	4.227	5.477	2.643	2.045	4.370	nan	nan	8.538	5.210	4.852	3.280	5.471	5.117	5.752	4.913	4.445	5.621	nan	5.935	19.086	3.882	5.328	9.086
5473	chr15	81626931	81643332	+	0	NA	intron (NM_177821, intron 20 of 30)	intron (NM_177821, intron 20 of 30)	-28758	NM_001289712	214669	Mm.280768	NM_145993	ENSMUSG00000022394	L3mbtl2	4732493N06Rik|M4mbt	l(3)mbt-like 2 (Drosophila)	protein-coding	6.454	nan	0.729	6.803	3.122	2.024	nan	10.701	5.082	nan	nan	1.952	10.849	10.959	5.601	7.774	nan	7.950	2.374	1.391	1.233	nan	2.192	1.706	6.759
2567	chr11	85649666	85655550	+	0	NA	intron (NM_138681, intron 24 of 25)	L1MEc|LINE|L1	67136	NR_045875	71489	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	2.837	0.804	0.190	7.812	0.979	0.418	2.129	0.747	1.891	3.466	1.212	0.801	1.062	1.824	1.726	2.346	1.073	3.296	0.960	0.754	0.520	nan	0.454	0.323	3.004
4321	chr13	99457748	99468957	+	0	NA	intron (NM_008634, intron 2 of 6)	(TA)n|Simple_repeat|Simple_repeat	-50526	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	2.634	1.826	0.988	2.672	2.208	2.033	4.326	3.582	2.357	3.209	1.036	1.203	3.033	4.206	5.863	4.610	nan	4.361	8.526	4.267	3.992	7.829	8.389	7.004	5.529
15098	chr9	56317716	56319687	+	0	NA	5' UTR (NM_172924, exon 3 of 7)	5' UTR (NM_172924, exon 3 of 7)	99349	NM_172924	244895	Mm.490331	NM_172924	ENSMUSG00000074305	Peak1	1110049L02Rik|9530046P14|AA690169|BE132841|C230081A13Rik|SGK269|mKIAA2002	pseudopodium-enriched atypical kinase 1	protein-coding	4.410	0.995	0.411	2.448	2.600	1.475	3.026	2.633	3.090	2.651	1.093	0.959	3.309	4.073	3.407	5.189	3.113	4.588	0.573	1.038	1.040	0.738	0.776	0.682	4.899
10274	chr4	94714821	94721760	+	0	NA	Intergenic	Intergenic	-20999	NM_001290549	21687	Mm.14313	NM_013690	ENSMUSG00000006386	Tek	AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2	endothelial-specific receptor tyrosine kinase	protein-coding	9.334	nan	2.369	14.310	6.435	4.104	7.741	8.999	nan	11.244	6.519	3.630	8.152	11.565	11.290	11.205	5.751	10.920	8.992	2.869	2.820	9.906	5.812	5.599	16.985
12587	chr6	113380587	113386492	+	0	NA	intron (NM_001170486, intron 2 of 4)	MER113|DNA|hAT-Charlie	5426	NM_001170485	68089	Mm.289306	NM_026552	ENSMUSG00000079426	Arpc4	20kDa|5330419I20Rik|AI327076|p20-Arc	actin related protein 2/3 complex, subunit 4	protein-coding	2.098	0.655	0.713	1.702	2.073	1.341	2.733	4.069	1.105	0.957	0.417	0.392	2.367	3.973	1.585	2.540	2.020	1.520	0.489	0.747	0.782	0.459	nan	0.624	2.397
9692	chr3	108096121	108102787	+	0	NA	intron (NM_008141, intron 7 of 8)	intron (NM_008141, intron 7 of 8)	6388	NM_008141	14686	Mm.439652	NM_008141	ENSMUSG00000009108	Gnat2	AW490837|Gnat-2|Gt-2|Tcalpha	guanine nucleotide binding protein, alpha transducing 2	protein-coding	6.104	0.901	0.654	6.351	2.889	1.778	1.915	1.278	3.820	3.925	3.937	1.323	2.917	3.713	2.421	3.988	3.494	4.525	2.207	1.397	1.464	1.718	2.156	1.664	5.104
9219	chr3	31005557	31007417	+	0	NA	intron (NM_008857, intron 1 of 17)	L1MA4|LINE|L1	10716	NM_008857	18759	Mm.291554	NM_008857	ENSMUSG00000037643	Prkci	2310021H13Rik|AI427505|PKClambda|Pkci|Pkcl|Prkcl|aPKClambda|mKIAA4165	protein kinase C, iota	protein-coding	2.980	2.464	1.630	3.026	2.623	1.447	3.257	3.626	nan	2.957	1.720	1.625	4.367	4.607	3.692	4.621	2.817	4.166	3.453	1.478	1.263	3.402	1.254	1.430	3.044
6052	chr16	36536626	36543663	+	0	NA	intron (NM_013803, intron 1 of 6)	intron (NM_013803, intron 1 of 6)	21990	NM_013803	12374	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	nan	0.910	0.657	0.393	0.163	0.104	0.323	0.451	0.351	0.287	0.333	0.253	0.229	nan	0.298	nan	0.336	0.505	4.267	1.807	0.909	5.453	3.806	2.239	nan
3289	chr12	36604487	36606287	+	0	NA	intron (NM_178629, intron 9 of 9)	intron (NM_178629, intron 9 of 9)	189771	NR_037309	100499526		NR_037309	ENSMUSG00000092917	Mir3472	mmu-mir-3472	microRNA 3472	ncRNA	3.601	nan	0.339	1.465	1.347	0.911	3.511	2.703	2.444	2.319	1.554	1.160	4.725	4.070	2.746	3.058	5.936	2.849	nan	0.973	0.341	0.457	0.644	0.651	1.615
9100	chr2	179860188	179861746	+	0	NA	intron (NM_009867, intron 7 of 15)	intron (NM_009867, intron 7 of 15)	115679	NM_001081092	228980	Mm.235542	NM_001081092	ENSMUSG00000039117	Taf4	135kDa|AI450312|TAFII130|TAFII135|Taf2c1|Taf4a	TATA-box binding protein associated factor 4	protein-coding	4.097	1.576	0.622	1.855	1.081	0.696	4.216	6.412	1.942	2.022	1.818	1.134	4.012	3.568	3.032	3.921	3.185	3.475	3.486	2.371	1.184	5.916	2.000	0.987	4.381
11945	chr5	145738855	145743419	+	0	NA	Intergenic	PB1|SINE|Alu	-21001	NM_017396	53973	Mm.379071	NM_017396	ENSMUSG00000075551	Cyp3a41a	Cyp3a41	cytochrome P450, family 3, subfamily a, polypeptide 41A	protein-coding	4.428	0.669	0.404	3.381	7.209	6.658	6.957	6.267	5.412	5.109	6.226	4.109	5.620	6.217	6.009	5.087	4.385	4.743	1.245	1.266	1.571	1.392	1.316	1.480	4.548
8487	chr2	102738966	102742161	+	0	NA	intron (NM_001077515, intron 4 of 10)	B4A|SINE|B4	34125	NM_001077515	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	13.015	10.944	2.922	8.890	4.715	2.498	6.596	10.126	5.966	8.414	8.950	4.391	8.574	10.519	9.665	11.668	9.111	8.308	1.829	2.663	1.643	1.330	1.870	1.096	15.325
13221	chr7	56416125	56420193	+	0	NA	intron (NM_021879, intron 21 of 23)	intron (NM_021879, intron 21 of 23)	178388	NM_021879	18431	Mm.137052	NM_021879	ENSMUSG00000030450	Oca2	D7H15S12|D7Icr28RN|D7Nic1|p|p<cas>	oculocutaneous albinism II	protein-coding	2.226	0.764	0.510	2.867	2.022	0.751	1.443	2.382	2.382	3.491	0.594	1.040	2.431	3.831	2.149	2.767	1.871	4.587	8.371	5.243	3.097	8.514	10.878	7.198	2.636
12800	chr6	136437730	136441263	+	0	NA	Intergenic	MuRRS4-int|LTR|ERV1	-23927	NM_001201390	100502936	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	7.818	3.248	1.875	3.247	6.512	3.860	4.379	3.518	3.072	2.287	7.112	4.754	2.285	5.196	nan	2.790	3.456	4.130	nan	3.309	1.895	2.715	2.549	1.548	nan
2188	chr11	53137849	53139037	+	0	NA	intron (NM_177059, intron 7 of 15)	intron (NM_177059, intron 7 of 15)	-18387	NR_046047	790909	Mm.404626	NR_046047	ENSMUSG00000087668	Gm11186	OTTMUSG00000000039	predicted gene 11186	ncRNA	6.136	6.088	3.820	4.851	5.959	3.900	5.776	6.077	3.956	4.279	3.619	3.883	3.781	4.606	5.131	5.171	4.492	5.243	nan	5.335	4.149	3.134	6.246	5.015	4.539
10181	chr4	65265743	65266904	+	0	NA	intron (NM_021362, intron 10 of 21)	intron (NM_021362, intron 10 of 21)	142149	NM_021362	18491	Mm.317854	NM_021362	ENSMUSG00000028370	Pappa	8430414N03Rik|IGFBP-4ase|PAG1|PAPP-A	pregnancy-associated plasma protein A	protein-coding	9.488	3.228	1.219	4.554	8.440	4.614	7.656	5.606	3.392	6.438	4.218	2.290	3.084	8.276	4.290	5.719	6.015	4.557	6.840	10.292	4.672	6.427	nan	9.736	9.060
1778	chr10	117296031	117305113	+	0	NA	Intergenic	B3|SINE|B2	-7704	NM_013590	17110	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	7.637	3.430	1.508	3.744	4.389	3.226	7.092	6.293	3.742	4.715	1.538	0.946	5.817	7.122	6.060	7.082	6.647	nan	0.735	0.873	0.721	0.551	0.570	0.552	7.353
8422	chr2	90335842	90346674	+	0	NA	Intergenic	ERVB7_2B-LTR_MM|LTR|ERVK	19036	NM_146265	257665	Mm.271314	NM_146265	ENSMUSG00000075064	Olfr1506	MOR228-4	olfactory receptor 1506	protein-coding	5.232	1.696	0.815	2.798	1.917	1.049	3.316	6.469	3.806	3.430	4.973	3.150	5.526	4.432	3.593	4.919	4.979	5.074	2.310	1.430	0.910	2.173	1.388	1.005	6.926
2339	chr11	67648423	67650291	+	0	NA	intron (NM_001109657, intron 4 of 13)	URR1B|DNA|hAT-Charlie	-45969	NM_009038	19674	Mm.439726	NM_009038	ENSMUSG00000020907	Rcvrn	CAR|S-modulin	recoverin	protein-coding	5.294	0.476	0.240	2.339	2.272	2.221	2.364	2.928	3.473	4.935	0.827	0.565	3.842	4.956	4.115	5.897	5.054	5.356	0.875	0.794	0.690	0.980	nan	0.215	2.883
12329	chr6	72684445	72692888	+	0	NA	intron (NM_001079822, intron 3 of 12)	MTD|LTR|ERVL-MaLR	58835	NR_040421	100038714	Mm.321330	NR_040421		Gm15401	ENSMUSG00000072999|OTTMUSG00000021199	predicted gene 15401	ncRNA	4.315	0.999	0.727	3.473	3.125	2.314	9.347	4.448	2.714	3.422	1.084	0.972	6.510	7.126	6.846	7.812	5.508	4.801	1.740	1.369	0.896	1.965	1.698	1.516	5.923
9124	chr2	181326168	181328900	+	0	NA	intron (NR_030710, intron 5 of 32)	intron (NR_030710, intron 5 of 32)	6728	NR_030710	269400	Mm.11333	NM_001001882	ENSMUSG00000038685	Rtel1	AI451565|AW540478|Rtel	regulator of telomere elongation helicase 1	protein-coding	6.820	8.869	2.669	8.035	4.319	3.861	6.769	8.659	4.616	10.282	5.487	2.818	6.973	7.133	7.278	10.023	6.089	8.283	5.672	2.758	4.010	6.488	3.899	6.590	13.679
6865	chr17	75904806	75907671	+	0	NA	Intergenic	Helitron3Na_Mam|RC|Helitron	45215	NR_033456	100043885	Mm.127562	NR_033456		Gm4710	-	predicted gene 4710	ncRNA	0.534	14.252	7.768	0.984	0.398	0.126	nan	nan	nan	0.548	0.486	0.368	0.371	0.732	0.994	nan	0.698	0.508	0.742	1.098	0.678	1.511	0.833	0.393	0.597
10603	chr4	131620103	131623919	+	0	NA	Intergenic	MIRb|SINE|MIR	216267	NM_011214	19273	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding	3.637	0.857	0.625	4.300	1.904	1.192	3.825	5.672	2.399	3.300	1.183	0.730	3.377	3.908	3.723	4.423	2.587	3.320	2.303	2.180	1.752	2.732	0.859	0.440	7.872
10254	chr4	88683862	88689983	+	0	NA	Intergenic	L1M2|LINE|L1	-3143	NM_010503	15965	Mm.14091	NM_010503	ENSMUSG00000078354	Ifna2	Ifa2	interferon alpha 2	protein-coding	0.896	nan	0.412	0.521	0.867	0.464	1.719	nan	nan	1.117	9.140	4.495	1.575	1.979	1.369	0.837	0.609	nan	0.660	nan	0.181	0.886	0.298	0.362	nan
8783	chr2	148266744	148269259	+	0	NA	Intergenic	ORR1B2-int|LTR|ERVL-MaLR	-127376	NM_009219	20608	Mm.35324	NM_009219	ENSMUSG00000037014	Sstr4	Smstr4|sst4	somatostatin receptor 4	protein-coding	6.458	2.554	0.429	10.514	1.791	0.697	2.239	1.560	2.855	3.874	1.731	0.662	1.519	2.774	3.347	4.519	1.663	5.628	nan	0.788	0.634	1.637	0.363	0.198	6.027
8385	chr2	76510068	76514743	+	0	NA	intron (NM_001290734, intron 2 of 24)	(GA)n|Simple_repeat|Simple_repeat	13399	NM_001290735	99031	Mm.240435	NM_145525	ENSMUSG00000042359	Osbpl6	1110062M20Rik|AI596402|ORP-6|mKIAA4128	oxysterol binding protein-like 6	protein-coding	5.556	9.790	4.726	5.915	2.113	1.661	4.217	5.631	3.744	6.018	2.882	2.610	4.923	5.503	6.322	nan	6.077	6.208	3.077	1.607	2.039	4.221	1.547	1.929	8.072
5986	chr16	30967910	30982784	+	0	NA	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	106085	NM_198626	268880	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	5.665	2.076	0.763	3.380	1.349	0.700	4.236	6.837	4.499	7.232	1.656	1.285	7.400	7.189	4.664	nan	4.147	6.011	3.256	1.277	1.030	2.897	nan	1.404	8.410
160	chr1	51802769	51806877	+	0	NA	intron (NM_001290982, intron 7 of 28)	intron (NM_001290982, intron 7 of 28)	111155	NM_001290982	17912	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	6.330	0.691	0.267	3.189	2.390	1.185	5.229	5.413	3.382	4.225	2.921	1.582	6.959	6.795	4.468	7.970	5.884	5.632	nan	0.778	0.472	1.122	0.954	0.561	5.378
15197	chr9	64641265	64643941	+	0	NA	intron (NM_172522, intron 6 of 22)	intron (NM_172522, intron 6 of 22)	95153	NM_017382	53869	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	4.375	2.856	1.584	3.969	2.517	1.744	1.313	1.200	2.522	2.207	2.006	0.880	1.422	2.948	1.604	1.825	1.647	2.348	nan	2.560	2.038	1.702	1.433	1.340	1.854
7177	chr18	38347539	38350733	+	0	NA	Intergenic	Intergenic	-10143	NM_011937	26384	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	2.057	1.197	0.288	3.542	1.304	0.693	4.419	2.987	1.481	3.169	0.699	0.915	1.810	4.043	4.495	5.461	4.365	2.772	2.848	1.637	1.832	4.351	3.024	2.926	10.524
98	chr1	36628971	36634225	+	0	NA	intron (NM_001126046, intron 6 of 14)	intron (NM_001126046, intron 6 of 14)	-38266	NM_027957	381337	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	3.567	2.272	0.706	3.679	0.920	0.350	2.151	3.270	1.686	2.203	3.641	2.018	2.842	3.473	2.563	5.828	4.498	2.201	1.974	2.006	1.651	2.980	1.897	1.259	4.243
7459	chr19	3680770	3685468	+	0	NA	intron (NM_008513, intron 1 of 22)	intron (NM_008513, intron 1 of 22)	3445	NM_008513	16973	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	4.110	1.317	0.650	5.503	2.743	1.386	5.699	8.270	3.853	3.838	3.940	2.830	3.001	4.374	4.731	4.957	4.103	4.612	2.617	2.193	1.819	5.661	3.367	2.629	6.637
1278	chr10	51889226	51897078	+	0	NA	Intergenic	L1MD1|LINE|L1	-129350	NM_001300957	215031	Mm.87237	NM_153786	ENSMUSG00000049641	Vgll2	C130057C21Rik|VITO-1|Vito1|vgl-2	vestigial like family member 2	protein-coding	5.235	nan	0.366	1.345	2.390	1.388	6.588	4.262	4.104	3.351	0.719	2.336	5.728	4.521	5.323	4.748	5.270	4.382	nan	0.361	0.528	0.240	0.651	0.427	3.747
2901	chr11	106335648	106343954	+	0	NA	intron (NM_133199, intron 10 of 23)	intron (NM_133199, intron 10 of 23)	9589	NM_133199	110880	Mm.432528	NM_133199	ENSMUSG00000001027	Scn4a	Nav1.4|SkM1|mH2	sodium channel, voltage-gated, type IV, alpha	protein-coding	4.375	1.853	1.093	nan	4.114	2.590	3.292	5.087	3.349	3.353	4.971	2.839	4.289	5.342	3.617	4.698	4.956	nan	1.047	1.066	1.345	nan	1.144	0.814	3.071
13718	chr7	130238661	130244252	+	0	NA	intron (NM_010207, intron 3 of 17)	intron (NM_010207, intron 3 of 17)	25352	NM_010207	14183	Mm.16340	NM_010207	ENSMUSG00000030849	Fgfr2	AU043015|AW556123|Bek|Fgfr-2|Fgfr-7|Fgfr7|KGFR|KGFRTr|svs	fibroblast growth factor receptor 2	protein-coding	5.378	1.169	0.636	5.084	4.905	3.693	7.078	8.779	5.108	6.067	4.953	3.602	7.717	7.630	6.903	6.438	6.649	6.623	3.607	2.275	1.630	3.673	3.031	2.652	6.062
2434	chr11	72827472	72833553	+	0	NA	intron (NM_001045536, intron 6 of 54)	intron (NM_001045536, intron 6 of 54)	34286	NM_001045536	195018	Mm.272030	NM_001045536	ENSMUSG00000055670	Zzef1	8430405D05Rik|BC051585|C130099L13Rik|C85424|NSPA|mKIAA0399	zinc finger, ZZ-type with EF hand domain 1	protein-coding	2.257	1.687	0.695	3.271	2.359	1.719	3.580	3.934	2.213	4.045	1.053	0.462	3.777	nan	4.485	4.291	4.164	3.505	2.662	2.825	2.707	3.377	nan	1.613	nan
15597	chr9	120720531	120722325	+	0	NA	Intergenic	Intergenic	144097	NR_073359	76100	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	2.603	0.732	0.147	1.813	1.850	0.761	2.792	2.905	2.071	2.610	0.990	0.862	2.152	3.940	2.001	3.006	1.501	2.556	1.097	0.623	1.519	0.668	nan	0.861	3.812
1381	chr10	67552564	67559563	+	0	NA	Intergenic	RCHARR1|DNA|hAT-Charlie	-7108	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	8.213	1.143	0.451	4.577	4.127	1.687	4.995	3.719	5.838	7.143	1.482	1.018	8.956	10.582	5.740	8.274	6.425	7.686	1.013	1.163	0.473	1.348	0.498	0.598	9.208
14400	chr8	86261380	86267121	+	0	NA	Intergenic	Intergenic	302340	NM_172912	244562	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding	7.585	7.398	2.663	9.128	5.142	3.293	5.185	6.170	4.903	5.916	4.994	3.995	3.886	5.654	5.580	6.074	3.417	6.343	nan	3.252	3.273	2.541	1.453	1.229	6.544
3735	chr12	112402337	112406769	+	0	NA	Intergenic	Intergenic	18645	NR_036459	100504733	Mm.255309	NM_176956		A730018C14Rik	-	RIKEN cDNA A730018C14 gene	ncRNA	5.544	11.641	3.196	7.041	2.442	1.642	4.251	3.825	nan	7.146	3.008	2.273	4.351	3.798	6.855	6.837	3.539	6.424	3.967	1.672	1.993	5.297	1.884	2.171	nan
12668	chr6	120615122	120618071	+	0	NA	Intergenic	MTE2b|LTR|ERVL-MaLR	-49825	NM_001128151	330409	Mm.333357	NM_001128151	ENSMUSG00000071226	Cecr2	2610101O16Rik|2810409N01Rik|Gtl4|mKIAA1740	cat eye syndrome chromosome region, candidate 2	protein-coding	4.896	7.011	1.999	9.110	4.433	2.758	0.724	1.184	2.691	11.437	0.615	0.557	1.493	3.696	2.636	3.663	2.481	7.158	0.420	0.490	0.811	0.743	nan	0.897	13.648
3732	chr12	112126577	112130064	+	0	NA	TTS (NM_001081169)	TTS (NM_001081169)	-2560	NR_029590	387199		NR_029590	ENSMUSG00000065574	Mir203	Mirn203|mir-203|mmu-mir-203	microRNA 203	ncRNA	8.916	4.417	1.986	4.136	4.110	2.567	6.630	6.122	nan	5.200	3.450	2.021	6.772	7.031	6.019	7.409	7.388	4.966	3.223	2.729	2.552	3.455	3.752	3.155	10.572
4921	chr14	102067077	102070746	+	0	NA	Intergenic	Intergenic	228288	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.340	12.976	9.121	0.440	0.285	0.132	0.211	0.591	0.564	0.403	0.575	0.278	0.140	0.355	0.437	0.589	0.575	0.664	0.790	0.653	0.551	0.573	0.754	0.847	nan
15492	chr9	107789765	107793275	+	0	NA	intron (NM_011251, intron 9 of 20)	intron (NM_011251, intron 9 of 20)	-20518	NM_148930	83486	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	6.247	3.883	1.637	4.482	2.553	1.106	6.135	7.715	4.555	4.362	3.998	2.458	5.184	6.781	6.942	7.433	4.208	6.568	2.227	1.463	0.919	2.957	1.563	1.156	7.930
14825	chr8	129440601	129449780	+	0	NA	Intergenic	Intergenic	181560	NR_144501	102635552		NM_001346808		Gm32856	-	predicted gene, 32856	protein-coding	4.919	nan	1.498	nan	3.888	2.848	nan	7.019	4.188	4.966	3.588	2.877	5.572	6.124	nan	6.292	5.054	nan	nan	1.572	1.298	nan	1.802	nan	nan
8063	chr2	28392054	28395933	+	0	NA	Intergenic	CpG	-53948	NM_001005420	241289	Mm.330095	NM_001005420	ENSMUSG00000035829	Ppp1r26	Gm347|Kiaa0649|mKIAA0649	protein phosphatase 1, regulatory subunit 26	protein-coding	4.036	14.065	3.393	5.703	1.974	1.453	2.690	7.808	2.949	3.257	1.302	1.876	2.490	2.743	3.832	5.926	2.192	4.481	3.005	1.486	1.770	3.705	1.585	1.869	5.863
586	chr1	132595122	132598945	+	0	NA	intron (NM_182716, intron 21 of 29)	intron (NM_182716, intron 21 of 29)	45825	NM_001160316	269116	Mm.326702	NM_182716	ENSMUSG00000026442	Nfasc	AA387016|D430023G06Rik|NF|mKIAA0756	neurofascin	protein-coding	4.165	nan	0.309	3.894	2.207	0.869	2.885	2.971	4.503	4.610	1.308	0.837	6.469	6.002	4.821	9.820	5.331	6.347	nan	0.731	0.524	0.770	0.547	0.325	4.889
7828	chr19	46544380	46547028	+	0	NA	intron (NM_019718, intron 3 of 5)	intron (NM_019718, intron 3 of 5)	27381	NM_019718	56350	Mm.22085	NM_019718	ENSMUSG00000025035	Arl3	-	ADP-ribosylation factor-like 3	protein-coding	6.050	12.698	4.628	7.165	5.076	2.975	10.266	8.078	5.294	6.348	4.894	5.342	5.647	7.878	7.922	8.967	7.107	8.139	2.033	2.653	2.235	3.987	2.468	2.195	10.357
11071	chr5	23977818	23982745	+	0	NA	intron (NM_001310471, intron 9 of 10)	B2_Mm2|SINE|B2	50031	NM_001310471	84652	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	5.166	0.965	0.341	5.904	2.920	1.492	7.753	8.436	4.349	10.665	5.953	3.105	7.517	9.881	9.387	9.794	5.686	9.009	0.869	0.583	0.574	1.110	0.498	0.570	12.721
7920	chr2	3071949	3077373	+	0	NA	Intergenic	L1Md_T|LINE|L1	-39563	NM_001310434	269233	Mm.23044	NM_001081161	ENSMUSG00000050530	Fam171a1	9630050M13Rik|AA409679	family with sequence similarity 171, member A1	protein-coding	nan	0.559	0.402	2.562	0.927	0.356	1.027	0.953	0.913	0.895	0.917	1.340	0.847	1.265	1.435	1.052	0.668	1.956	4.359	1.970	1.064	5.094	3.929	1.997	0.889
410	chr1	89766845	89780462	+	0	NA	intron (NM_178119, intron 12 of 17)	MER2|DNA|TcMar-Tigger	-89761	NR_015540	74403	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	8.923	2.555	1.707	4.671	5.107	3.188	6.145	3.319	5.468	6.580	2.808	1.608	7.144	8.178	4.679	8.290	6.597	6.957	1.172	1.521	1.046	nan	1.040	0.870	6.490
8855	chr2	155205914	155210842	+	0	NA	intron (NM_008395, intron 17 of 24)	intron (NM_008395, intron 17 of 24)	-28155	NR_111891	67068	Mm.23693	NM_025947	ENSMUSG00000047459	Dynlrb1	2010012N15Rik|2010320M17Rik|9430076K19Rik|AV124457|DNLC2A|Dncl2a|km23-1	dynein light chain roadblock-type 1	protein-coding	6.480	4.948	1.491	6.726	2.867	1.603	4.999	5.746	5.660	8.768	2.808	1.919	5.786	5.719	6.282	7.931	5.686	7.728	5.501	3.553	2.581	6.265	4.304	3.585	9.091
8763	chr2	146448679	146451894	+	0	NA	intron (NM_001033348, intron 7 of 40)	intron (NM_001033348, intron 7 of 40)	61718	NM_001033348	241694	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	4.933	0.662	0.453	4.894	5.195	2.958	5.267	8.695	3.849	4.641	1.748	0.630	9.859	7.226	4.220	6.743	6.022	4.688	1.934	0.818	0.772	2.128	1.736	2.152	5.289
3193	chr12	15724083	15725286	+	0	NA	Intergenic	Intergenic	76417	NR_105809	102465204		NR_105809	ENSMUSG00000098480	Mir6387	Gm27281|mmu-mir-6387	microRNA 6387	ncRNA	8.945	1.497	0.736	4.377	2.968	1.957	3.989	7.558	4.321	3.176	4.328	4.516	3.617	4.442	4.822	4.897	4.568	4.950	1.436	1.126	0.882	1.631	1.120	0.195	3.761
10707	chr4	135410159	135416592	+	0	NA	3' UTR (NM_022980, exon 5 of 5)	3' UTR (NM_022980, exon 5 of 5)	3258	NR_030481	735285		NR_030481	ENSMUSG00000076123	Mir700	Mirn700|mir-700|mmu-mir-700	microRNA 700	ncRNA	7.099	8.892	4.105	6.802	4.375	3.596	6.967	6.983	nan	8.125	4.607	3.796	7.399	9.428	7.294	7.656	5.534	6.844	7.387	5.534	5.195	7.260	nan	8.868	6.953
12719	chr6	127521496	127522687	+	0	NA	Intergenic	Intergenic	-55884	NM_001033464	381812	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	1.007	1.532		3.338	0.747	0.876	1.951	2.319	2.951	3.247	0.051	0.988	6.180	4.196	4.445	7.870	3.816	5.221	0.846	0.506		1.115	0.295	0.202	3.710
3019	chr11	116951882	116957206	+	0	NA	intron (NM_172948, intron 8 of 16)	intron (NM_172948, intron 8 of 16)	35681	NM_172948	268510	Mm.35141	NM_172948	ENSMUSG00000043857	Mgat5b	C330018B01|GnT-IX|mGnTVB	mannoside acetylglucosaminyltransferase 5, isoenzyme B	protein-coding	4.397	4.871	2.863	5.954	4.125	2.768	nan	2.142	3.658	2.803	1.423	3.094	2.086	2.666	2.539	2.893	1.960	nan	1.585	nan	1.894	1.430	1.342	1.578	2.852
6286	chr16	98300463	98301216	+	0	NA	Intergenic	Intergenic	-218400	NR_015491	320586	Mm.442230	NR_015491		A630089N07Rik	-	RIKEN cDNA A630089N07 gene	ncRNA	5.297	0.855	0.168	1.724	1.479	0.486	2.949	3.141	nan	1.977	1.345	1.274	4.113	3.603	3.396	4.026	2.984	2.581	nan	0.756	0.368	1.380	0.435	0.746	5.006
1185	chr10	24430464	24432232	+	0	NA	Intergenic	Intergenic	-164094	NM_010217	14219	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	nan	16.288	5.595	3.695	1.114	0.765	2.458	2.964	3.213	5.551	5.197	3.062	3.576	2.478	4.002	4.395	1.788	3.206	3.199	1.625	2.127	4.218	2.101	2.301	3.258
12823	chr6	141197777	141201020	+	0	NA	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-49871	NM_018779	54611	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	2.850	1.009	0.362	5.833	1.042	0.498	0.850	2.662	1.358	2.251	0.736	0.400	0.740	1.371	nan	1.618	1.023	2.517	nan	1.499	1.919	1.648	0.669	0.810	nan
4637	chr14	47242995	47244295	+	0	NA	intron (NM_172598, intron 24 of 24)	B1_Mus2|SINE|Alu	33212	NM_172598	218973	Mm.265615	NM_172598	ENSMUSG00000037572	Wdhd1	A630092E18|AND-1|D630024B06Rik	WD repeat and HMG-box DNA binding protein 1	protein-coding	5.231	0.630	0.336	0.949	1.586	1.426	5.864	2.684	1.522	1.609	1.365	0.770	3.247	3.333	3.533	4.432	1.918	2.338	0.395	1.074	1.128	0.842	0.440	0.416	5.173
11683	chr5	123148767	123152445	+	0	NA	intron (NM_001040398, intron 6 of 16)	intron (NM_001040398, intron 6 of 16)	8413	NM_001040398	208043	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	3.889	5.727	3.685	4.026	2.176	1.696	3.684	2.278	2.743	2.075	1.684	3.934	2.499	2.424	nan	3.709	2.960	nan	nan	2.073	1.970	1.868	nan	1.975	2.684
11521	chr5	105923650	105926493	+	0	NA	Intergenic	Intergenic	48503	NM_018759	54367	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	6.752	5.067	2.055	5.298	4.282	2.271	8.684	5.633	6.353	9.734	3.666	2.167	5.532	5.329	7.643	11.257	6.811	8.280	nan	1.705	1.458	2.744	1.693	1.513	7.251
9565	chr3	96500032	96501840	+	0	NA	Intergenic	Intergenic	-24249	NM_027126	69585	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	6.911	11.839	2.509	8.757	3.715	2.178	7.302	6.019	3.297	8.535	5.364	2.676	5.490	7.495	6.608	7.818	4.934	6.601	5.390	3.102	3.046	7.094	5.139	4.343	12.143
9009	chr2	166730954	166733442	+	0	NA	Intergenic	Intergenic	-18366	NM_177782	277360	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	6.194	9.730	3.042	7.105	3.704	2.090	5.259	7.340	3.864	6.299	4.883	2.371	5.718	6.784	8.073	11.483	7.633	7.587	nan	2.063	1.457	5.095	2.773	2.180	11.325
7522	chr19	7388496	7390288	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	-6366	NM_001167831	68229	Mm.34766	NM_001033139	ENSMUSG00000024970	AI846148	1700105P06Rik	expressed sequence AI846148	protein-coding	3.467	1.592	0.756	2.033	3.913	2.450	2.626	3.731	nan	2.274	3.098	1.298	1.862	3.603	1.598	2.410	3.144	2.526	1.248	1.644	1.573	1.647	1.775	2.252	3.477
1741	chr10	114611914	114614010	+	0	NA	intron (NM_146241, intron 3 of 18)	intron (NM_146241, intron 3 of 18)	188408	NM_146241	237553	Mm.445550	NM_146241	ENSMUSG00000050663	Trhde	9330155P21Rik	TRH-degrading enzyme	protein-coding	5.763	0.479	0.191	2.026	1.683	1.007	2.367	3.243	2.834	2.920	0.259	0.307	3.769	5.388	5.813	4.907	3.103	3.745	1.210	0.369	0.265	1.210	0.271	0.234	4.655
1130	chr10	19297045	19298721	+	0	NA	Intergenic	Intergenic	-58656	NM_053008	94222	Mm.156946	NM_053008	ENSMUSG00000045591	Olig3	Bhlhb7|bHLHe20|oligo3	oligodendrocyte transcription factor 3	protein-coding	3.648	5.507	1.410	1.307	0.433	0.287	0.637	0.985	2.352	2.284	5.091	1.581	1.909	1.737	1.664	2.189	1.613	2.138	0.825	0.692	0.371	0.720	0.224	0.112	nan
13321	chr7	80889736	80900387	+	0	NA	intron (NR_027976, intron 4 of 6)	intron (NR_027976, intron 4 of 6)	6208	NM_028026	71968	Mm.274226	NM_028026	ENSMUSG00000025722	Wdr73	1200011I23Rik|2410008B13Rik|AI848574|C85352	WD repeat domain 73	protein-coding	5.513	0.728	0.419	nan	3.147	1.250	5.057	8.903	5.368	8.205	0.659	1.760	6.784	7.652	5.623	nan	3.819	7.993	2.955	1.559	0.742	2.864	3.446	1.796	6.330
189	chr1	55082573	55086859	+	0	NA	exon (NM_010477, exon 3 of 12)	exon (NM_010477, exon 3 of 12)	3216	NM_010477	15510	Mm.1777	NM_010477	ENSMUSG00000025980	Hspd1	60kDa|Hsp60	heat shock protein 1 (chaperonin)	protein-coding	9.047	17.566	10.625	11.190	8.021	7.239	7.487	7.093	7.309	8.883	6.636	4.274	8.142	6.866	8.065	11.079	6.880	9.554	4.923	3.757	4.987	5.160	3.602	4.510	9.410
6216	chr16	92608382	92629291	+	0	NA	intron (NM_001111022, intron 5 of 6)	IMPB_01|Satellite|Satellite	78493	NM_001111023	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.474	nan	0.523	3.082	4.773	2.479	3.956	6.317	3.453	3.992	6.631	2.932	4.796	6.586	4.432	5.991	3.005	nan	0.995	1.006	0.663	nan	0.725	0.510	4.825
4918	chr14	100681805	100686447	+	0	NA	Intergenic	Intergenic	515943	NM_029680	76627	Mm.31415	NM_029680	ENSMUSG00000042888	Prr30	1700110M21Rik	proline rich 30	protein-coding	1.464	nan	1.456	2.501	0.810	0.544	0.941	6.356	1.065	1.518	0.686	0.516	0.545	0.769	0.896	1.037	0.615	1.402	6.407	3.857	2.898	6.330	7.728	6.987	nan
15003	chr9	43891855	43897745	+	0	NA	Intergenic	Lx5c|LINE|L1	-148584	NM_009382	21838	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding	2.919	5.054	1.439	4.180	1.424	0.789	0.758	4.076	1.590	2.975	1.959	0.873	1.141	2.269	nan	3.052	1.421	2.768	5.929	2.868	2.427	nan	3.249	2.993	nan
2330	chr11	65619102	65621632	+	0	NA	Intergenic	L2|LINE|L2	114465	NR_030417	791070		NR_030417	ENSMUSG00000076460	Mir744	Mirn744|mir-744|mmu-mir-744	microRNA 744	ncRNA	7.658	7.792	2.985	9.556	6.493	3.720	5.663	8.026	7.082	7.900	5.458	3.726	6.706	9.553	8.264	9.018	5.305	7.663	4.012	2.346	2.180	4.879	nan	2.599	8.609
2849	chr11	103112490	103115421	+	0	NA	Intergenic	Intergenic	-2370	NM_138753	192231	Mm.8763	NM_138753	ENSMUSG00000048878	Hexim1	7330426E13Rik|CLP-1|Clp1|HIS1	hexamethylene bis-acetamide inducible 1	protein-coding	4.664	2.916	1.722	4.700	5.507	3.973	4.921	3.143	3.669	4.628	2.912	2.983	2.707	7.054	4.280	4.018	3.802	nan	1.673	2.500	2.078	nan	1.566	1.536	4.371
11143	chr5	33204579	33206946	+	0	NA	Intergenic	Intergenic	12476	NM_133903	100689	Mm.34694	NM_133903	ENSMUSG00000037379	Spon2	2310045I24Rik|AI504350|M-spondin|Mindin|Mspondin	spondin 2, extracellular matrix protein	protein-coding	5.440	5.030	2.771	4.671	3.300	2.846	4.301	4.032	4.442	4.935	3.219	1.863	4.678	7.200	nan	5.797	4.892	4.351	2.538	1.148	2.212	2.857	2.330	2.676	5.116
7548	chr19	10007977	10009570	+	0	NA	intron (NM_001347429, intron 1 of 12)	intron (NM_001347429, intron 1 of 12)	7104	NM_001347429	74760	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	5.414	2.106	3.340	2.211	5.333	3.896	2.371	2.753	nan	3.127	4.442	1.376	1.553	3.758	1.647	nan	3.680	2.854	0.515	0.703	1.104	0.641	1.166	0.736	1.581
480	chr1	99665821	99668058	+	0	NA	Intergenic	Lx8b|LINE|L1	-105826	NM_172851	241175	Mm.251301	NM_172851	ENSMUSG00000067028	Cntnap5b	C230078M14Rik|Caspr5-2	contactin associated protein-like 5B	protein-coding	10.087	9.107	3.250	8.415	2.815	1.177	5.772	5.853	5.538	7.009	4.870	3.185	7.685	6.090	7.678	13.070	8.741	8.440	5.324	2.867	2.098	6.378	2.718	2.129	10.945
6169	chr16	85150593	85153837	+	0	NA	intron (NM_007471, intron 1 of 15)	intron (NM_007471, intron 1 of 15)	21492	NM_001198825	11820	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	5.465	nan	0.849	5.199	4.954	1.835	3.679	6.067	4.044	3.362	3.459	1.352	5.077	7.079	4.690	4.869	3.315	6.115	1.089	0.867	0.302	nan	0.287	0.390	5.322
107	chr1	37548405	37549323	+	0	NA	Intergenic	Intergenic	-7848	NM_173870	269181	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	9.058	10.648	7.195	3.722	2.114	2.963	1.874	7.268	3.736	3.522	3.965	3.014	3.906	3.721	2.989	5.026	6.093	3.556	1.086	3.382	2.310	0.847	0.948	0.918	5.474
87	chr1	34894800	34900872	+	0	NA	Intergenic	ORR1A2|LTR|ERVL-MaLR	47877	NM_145516	226971	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	7.145	9.090	4.354	5.821	4.130	2.878	5.360	4.788	5.260	7.292	3.776	2.180	4.721	5.309	5.426	nan	6.548	6.844	4.155	2.544	2.047	3.996	2.808	2.202	6.473
2385	chr11	69773889	69776559	+	0	NA	intron (NM_029348, intron 1 of 3)	intron (NM_029348, intron 1 of 3)	9312	NM_029348	75580	Mm.426361	NM_029348	ENSMUSG00000018750	Zbtb4	2310026P19Rik|9230111I22Rik|mKIAA1538	zinc finger and BTB domain containing 4	protein-coding	2.379	0.771	0.712	1.102	2.506	1.274	3.183	5.028	2.177	2.118	7.215	4.873	2.353	nan	2.713	2.708	2.028	2.678	1.076	0.790	0.942	0.599	nan	0.977	nan
12181	chr6	39205190	39209861	+	0	NA	promoter-TSS (NM_001033430)	promoter-TSS (NM_001033430)	-752	NM_001033430	338523	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|ENSMUSG00000073143|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	6.373	5.624	2.731	4.713	3.710	2.598	5.291	5.262	3.399	4.426	1.920	2.011	5.078	6.709	5.017	nan	3.989	6.749	4.759	3.641	4.391	6.710	4.971	5.565	6.128
4339	chr13	101513655	101515282	+	0	NA	Intergenic	Intergenic	-116888	NR_046187	78136	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA	6.617	8.759	3.146	7.779	2.797	1.620	5.411	6.504	4.765	7.033	4.082	2.816	5.846	8.200	8.540	8.927	5.343	6.503	6.257	3.074	2.206	7.011	3.339	3.148	10.444
3796	chr12	118771444	118775460	+	0	NA	Intergenic	Intergenic	-72877	NM_177082	320145	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	8.650	2.655	0.607	5.768	2.067	0.966	7.790	6.072	5.101	9.842	4.441	1.926	9.978	8.041	9.392	10.966	7.865	8.511	1.294	0.699	0.458	1.862	0.477	0.501	14.882
221	chr1	59819048	59824971	+	0	NA	intron (NM_007561, intron 3 of 12)	ORR1B2|LTR|ERVL-MaLR	57730	NM_007561	12168	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	9.759	4.286	1.534	10.661	3.761	2.652	6.994	6.180	6.189	9.957	5.140	3.439	8.719	7.764	7.602	10.486	7.191	9.227	4.095	1.880	2.120	4.648	2.542	2.666	11.173
3147	chr12	3307526	3311573	+	0	NA	5' UTR (NM_016676, exon 1 of 6)	5' UTR (NM_016676, exon 1 of 6)	420	NM_016676	19325	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	10.258	9.722	3.758	7.996	4.478	2.668	6.849	6.781	5.237	7.955	5.867	3.887	7.272	9.053	8.541	9.890	6.461	8.921	3.741	2.278	1.599	3.747	2.528	2.289	13.781
4486	chr14	18491841	18493843	+	0	NA	Intergenic	L1Md_A|LINE|L1	-160998	NM_009455	22194	Mm.4429	NM_009455	ENSMUSG00000021774	Ube2e1	UbcM3|Ubce5|ubcM2	ubiquitin-conjugating enzyme E2E 1	protein-coding	6.255	2.765	0.928	6.774	1.452	1.451	6.447	11.003	nan	6.752	3.030	2.227	6.838	7.823	9.980	9.436	4.053	6.541	4.615	1.294	1.446	4.412	2.483	2.787	16.423
14442	chr8	90155444	90158012	+	0	NA	Intergenic	Intergenic	191524	NM_172913	244579	Mm.302755	NM_172913	ENSMUSG00000043668	Tox3	500-9|BC052044|C230068E13|CAGF9|Tnrc9	TOX high mobility group box family member 3	protein-coding	0.264	9.214	3.463	0.288	0.112		0.237	0.127	nan	0.268	0.095	0.062	0.065	0.195	0.251	0.528	0.182	0.300	nan	0.165	0.119	0.551	0.139	0.043	0.419
417	chr1	90331658	90341733	+	0	NA	Intergenic	Intergenic	132715	NM_007722	12778	Mm.6522	NM_007722	ENSMUSG00000044337	Ackr3	AW541270|CXC-R7|CXCR-7|Cmkor1|Cxcr7|RDC-1|Rdc1	atypical chemokine receptor 3	protein-coding	6.903	0.534	0.394	4.518	3.889	2.618	4.922	3.414	6.217	6.578	6.455	4.708	8.385	6.978	4.191	8.681	5.433	7.909	1.221	0.815	0.937	nan	1.628	1.417	5.582
13907	chr7	149617678	149624572	+	0	NA	Intergenic	Intergenic	4306290	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	nan	nan	0.274	3.192	2.677	1.642	8.261	8.387	4.104	3.691	10.028	5.166	6.538	6.434	7.544	6.583	3.236	6.144	0.650	0.400	0.279	0.682	nan	0.183	8.716
13572	chr7	117161318	117163579	+	0	NA	Intergenic	MIRb|SINE|MIR	-218531	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	6.093	9.227	3.087	10.472	3.624	3.685	5.747	6.862	4.462	8.773	5.358	3.673	6.787	5.842	7.754	7.384	4.652	7.873	4.021	1.709	2.628	4.799	2.089	2.849	11.261
7172	chr18	38113104	38115038	+	0	NA	Intergenic	Intergenic	95691	NM_029357	75599	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	6.526	6.056	2.277	4.664	3.281	1.205	6.553	8.019	4.018	4.667	4.751	2.520	4.792	4.942	5.944	7.439	3.547	5.799	3.819	2.336	1.699	4.987	2.539	1.707	8.997
5772	chr16	8915292	8920690	+	0	NA	Intergenic	Intergenic	87891	NM_001081400	69053	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	nan	0.837	0.483	0.225	0.142	0.119	nan	0.333	0.210	0.291	0.287	0.294	0.123	0.196	0.260	0.598	0.222	0.433	1.695	0.939	0.865	5.412	1.711	1.255	0.542
8975	chr2	165225739	165232491	+	0	NA	intron (NM_174988, intron 1 of 11)	intron (NM_174988, intron 1 of 11)	5622	NM_174988	104010	Mm.151819	NM_174988	ENSMUSG00000053166	Cdh22	-	cadherin 22	protein-coding	4.879	1.288	0.312	1.984	1.926	0.998	4.337	5.818	2.278	3.663	1.405	1.851	4.860	4.784	3.496	4.609	2.714	2.895	nan	1.144	0.840	1.478	0.840	0.631	nan
7056	chr18	20934245	20941652	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-6677	NM_026301	67664	Mm.45980	NM_026301	ENSMUSG00000033107	Rnf125	4930553F04Rik	ring finger protein 125	protein-coding	nan	0.735	0.423	0.542	0.788	0.578	3.655	6.455	1.953	1.426	2.137	2.779	3.599	3.146	3.144	1.911	1.994	2.103	0.954	0.719	0.647	0.760	1.141	1.271	0.738
12598	chr6	113630242	113633134	+	0	NA	TTS (NM_009507)	TTS (NM_009507)	-6779	NM_172161	108960	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	5.223	2.063	1.644	3.175	4.087	3.506	4.271	4.697	3.529	3.250	2.207	2.838	3.399	4.969	3.540	4.693	4.212	3.059	0.890	1.669	2.303	0.645	nan	0.959	3.474
4547	chr14	26196828	26199020	+	0	NA	Intergenic	Intergenic	8606	NM_001270496	100039257	Mm.33344	NM_001270495	ENSMUSG00000021867	Tmem254b	ENSMUSG00000021867|Gm9746	transmembrane protein 254b	protein-coding	11.382	15.044	4.425	10.879	4.901	2.656	11.771	14.453	4.890	7.967	8.517	4.952	9.085	11.542	11.488	11.565	6.884	8.308	7.786	3.385	3.436	nan	6.928	6.489	17.105
9413	chr3	85677376	85679139	+	0	NA	intron (NM_172682, intron 7 of 11)	intron (NM_172682, intron 7 of 11)	67952	NM_172682	229488	Mm.119926	NM_172682	ENSMUSG00000051000	Fam160a1	9930021J17Rik	family with sequence similarity 160, member A1	protein-coding	1.077	0.357	0.575	0.556	0.956	0.699	1.190	1.157	1.232	1.039	0.839	0.472	1.052	0.805	1.073	nan	1.617	1.796	6.280	4.179	2.388	2.246	4.798	6.019	1.149
1530	chr10	81006597	81009477	+	0	NA	intron (NM_010319, intron 1 of 3)	intron (NM_010319, intron 1 of 3)	-6672	NM_001038655	14708	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	5.851	6.689	1.492	7.317	1.914	1.867	4.794	5.137	4.813	7.806	3.328	2.514	4.934	5.312	6.621	7.511	3.580	7.067	nan	1.539	1.742	4.542	2.474	2.626	9.854
5246	chr15	61815195	61820375	+	0	NA	Intergenic	Intergenic	-43334	NR_040350	432956	Mm.404918	NR_040350		D030024E09Rik	-	RIKEN cDNA D030024E09 gene	ncRNA	8.326	12.865	4.211	7.765	4.027	2.104	10.307	12.695	nan	7.594	6.895	4.681	8.983	9.986	12.350	nan	7.180	8.053	3.882	2.078	1.821	5.326	3.090	3.090	10.435
14632	chr8	116979363	116983791	+	0	NA	TTS (NM_026572)	TTS (NM_026572)	-2634	NM_027103	69528	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	3.040	0.997	0.464	1.804	1.432	0.481	2.228	2.237	1.976	3.862	0.386	0.610	3.047	2.768	4.470	6.338	3.728	4.023	2.148	1.905	1.597	6.495	4.198	2.403	5.634
13753	chr7	133917337	133921679	+	0	NA	exon (NM_007400, exon 16 of 23)	exon (NM_007400, exon 16 of 23)	-136723	NM_001286031	101437	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	10.133	7.357	2.669	8.833	7.018	4.648	9.944	13.886	7.102	10.006	8.144	5.157	11.136	15.245	10.381	10.523	8.504	10.728	3.505	2.841	2.560	4.290	3.414	3.319	12.086
2504	chr11	77845869	77846873	+	0	NA	intron (NM_001291214, intron 28 of 38)	intron (NM_001291214, intron 28 of 38)	45073	NM_001291215	360013	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	4.464	6.004	2.408	7.814	3.262	2.999	5.688	4.374	5.113	8.514	3.315	2.591	4.459	6.001	7.478	7.442	3.608	7.710	7.350	4.307	5.342	9.579	6.597	7.128	8.460
6980	chr18	3933296	3938874	+	0	NA	Intergenic	B3A|SINE|B2	-229747	NM_026092	67328	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	nan	1.561	1.046	0.463	0.413	0.351	0.805	1.760	0.903	0.643	0.707	0.514	nan	0.670	0.841	1.355	0.593	1.147	3.206	2.989	1.876	4.153	4.228	2.932	1.048
5912	chr16	23121088	23125507	+	0	NA	intron (NM_145480, intron 3 of 10)	MTE-int|LTR|ERVL-MaLR	4433	NM_145480	106344	Mm.386835	NM_145480	ENSMUSG00000022881	Rfc4	A1|AI894123|AU040575|RFC37	replication factor C (activator 1) 4	protein-coding	3.965	0.910	0.766	2.681	4.726	3.524	2.068	1.003	4.483	5.272	0.601	0.584	4.661	3.032	1.530	nan	3.397	3.490	0.696	0.783	0.750	0.503	nan	0.706	1.712
14054	chr8	14353229	14354531	+	0	NA	intron (NM_172910, intron 3 of 15)	intron (NM_172910, intron 3 of 15)	258005	NM_172910	244310	Mm.404697	NM_172910	ENSMUSG00000047495	Dlgap2	6430596N04Rik|Dap-2|Dap2|Sapap2	discs, large (Drosophila) homolog-associated protein 2	protein-coding	0.537	2.165	1.263	0.874	0.754	0.215	0.221	0.740	0.555	0.489	0.128	0.310	0.668	3.244	0.223	nan	0.527	1.281	0.948	0.661	0.587	1.279	0.630	0.259	0.588
2952	chr11	112131270	112134597	+	0	NA	Intergenic	Intergenic	578423	NR_024085	217294	Mm.297761	NM_146031	ENSMUSG00000041674	BC006965	-	cDNA sequence BC006965	ncRNA	2.390	0.508	0.513	nan	0.348	0.358	2.994	5.378	2.861	4.523	7.741	5.001	4.429	4.152	3.514	2.664	3.097	3.053	0.603	0.746	0.389	nan	0.191	0.206	1.667
8285	chr2	60680331	60684889	+	0	NA	intron (NM_001159564, intron 1 of 17)	intron (NM_001159564, intron 1 of 17)	-8917	NM_021359	16420	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	3.611	1.260	0.638	2.666	1.436	0.845	2.010	3.109	2.947	3.222	1.848	1.069	2.789	3.588	3.192	3.585	3.694	4.422	1.057	0.890	0.505	0.708	0.717	0.439	3.233
10267	chr4	91041364	91043035	+	0	NA	Intergenic	Lx6|LINE|L1	329856	NM_010486	15569	Mm.318042	NM_010486	ENSMUSG00000008489	Elavl2	Hub|mel-N1	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	protein-coding	0.423	nan	0.222	0.710	0.201	0.277	0.345	nan	nan	0.430	0.151	0.278	0.235	0.424	0.362	0.515	0.353	nan	4.338	nan	1.669	8.691	6.271	5.253	nan
14339	chr8	74762960	74764969	+	0	NA	Intergenic	Intergenic	-109210	NM_027837	71597	Mm.158735	NM_027837	ENSMUSG00000031621	Isx	9130012O13Rik|Pix-1	intestine specific homeobox	protein-coding	5.341	11.281	3.915	9.345	5.287	5.334	6.361	nan	nan	5.738	3.881	2.268	8.056	7.733	6.959	nan	6.638	4.936	3.040	2.743	4.833	nan	1.672	3.355	nan
9491	chr3	90328913	90334630	+	0	NA	Intergenic	B1_Mur1|SINE|Alu	-9883	NM_139304	229542	Mm.270999	NM_139304	ENSMUSG00000042390	Gatad2b	AL118180|C430014D17Rik|P66beta|mKIAA1150	GATA zinc finger domain containing 2B	protein-coding	4.482	0.934	0.354	2.491	5.608	2.536	11.685	7.069	3.043	3.819	5.023	2.563	7.746	10.307	6.901	7.302	4.927	6.169	nan	1.534	0.652	2.085	2.189	1.361	6.360
3724	chr12	111435165	111436546	+	0	NA	Intergenic	ID_B1|SINE|B4	-6806	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	1.776	0.321	0.245	nan	0.691	0.310	2.446	nan	nan	nan	0.120	0.232	3.246	4.553	3.448	3.662	3.935	2.467	0.540	0.534	0.644	0.537	0.217	0.051	4.070
8879	chr2	156687532	156692244	+	0	NA	intron (NM_001277186, intron 2 of 12)	L2b|LINE|L2	31021	NR_040505	74846	Mm.443946	NR_040505	ENSMUSG00000086638	4930405A21Rik	-	RIKEN cDNA 4930405A21 gene	ncRNA	nan	8.841	3.395	9.838	7.157	5.291	11.982	11.041	nan	11.367	5.334	3.688	9.669	nan	10.210	12.128	9.619	10.929	nan	2.125	2.697	3.159	2.322	2.177	15.186
13992	chr8	11248118	11250816	+	0	NA	intron (NR_133670, intron 2 of 52)	intron (NR_133670, intron 2 of 52)	-63338	NM_009932	12827	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	4.116	1.070	0.533	4.369	2.976	1.080	2.686	3.663	3.877	4.431	1.222	1.004	3.077	5.777	3.895	7.309	4.466	5.407	0.756	0.608	0.340	1.990	0.625	0.387	5.051
1440	chr10	75360972	75362431	+	0	NA	Intergenic	MER4B-int|LTR|ERV1	9646	NR_033602	544707	Mm.349862	NR_033602		Gm5779	EG544707	ribosomal protein, large, P0 pseudogene	pseudo	3.831	2.500	0.530	5.305	2.151	1.068	2.629	2.922	2.936	2.765	1.817	0.827	3.049	5.057	3.769	4.896	2.194	3.546	1.958	1.671	0.910	3.532	1.205	0.565	6.175
15696	chrX	20264081	20266754	+	0	NA	intron (NM_177353, intron 1 of 16)	L1ME1|LINE|L1	26347	NM_177353	236727	Mm.132983	NM_177353	ENSMUSG00000037341	Slc9a7	A530087D17Rik|NHE7	solute carrier family 9 (sodium/hydrogen exchanger), member 7	protein-coding	5.605	6.865	2.078	6.484	2.658	1.637	3.679	4.829	3.084	7.276	4.162	2.411	4.756	5.812	5.988	7.051	3.683	5.546	3.341	3.269	1.515	4.075	3.051	2.444	7.712
14187	chr8	42474477	42476129	+	0	NA	Intergenic	Lx8b|LINE|L1	648036	NR_045497	69966	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA	2.622	0.710	0.750	1.540	2.284	1.322	2.784	0.568	1.637	1.674	0.910	0.734	4.265	4.299	2.174	3.113	2.116	2.617	0.779	1.401	0.615	0.686	0.908	1.012	nan
15139	chr9	59384933	59393059	+	0	NA	3' UTR (NM_019927, exon 14 of 14)	3' UTR (NM_019927, exon 14 of 14)	-35488	NM_175325	102774	Mm.200714	NM_175325	ENSMUSG00000025235	Bbs4	AW537059|AW742241|D9Ertd464e	Bardet-Biedl syndrome 4 (human)	protein-coding	7.130	2.581	1.165	5.451	3.505	2.427	4.772	4.993	4.344	5.828	2.885	1.832	4.835	6.698	5.106	5.723	3.373	5.842	2.417	2.191	1.755	2.129	1.949	1.643	6.607
381	chr1	87734248	87738558	+	0	NA	Intergenic	Intergenic	-19608	NM_029846	77040	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	7.178	9.678	5.032	3.771	2.929	1.184	5.760	5.281	4.267	3.807	2.607	2.317	6.762	5.949	6.413	9.380	5.965	5.710	1.399	1.530	0.636	1.766	1.042	0.520	5.148
11495	chr5	103820075	103822178	+	0	NA	intron (NM_001080798, intron 7 of 19)	intron (NM_001080798, intron 7 of 19)	66553	NM_001080798	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	1.803	0.799	1.311	2.200	2.937	2.633	nan	2.141	2.065	1.557	6.159	3.712	1.588	1.659	1.054	1.338	1.651	1.716	nan	1.209	1.623	0.409	1.007	1.697	0.842
5020	chr15	7001439	7002755	+	0	NA	Intergenic	Intergenic	-127475	NM_001113386	16880	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	3.777	0.403	0.787	0.552	1.650	0.304	2.670	1.845	2.305	2.452	0.701	0.263	2.916	3.123	1.539	1.905	4.946	1.531	0.952	0.491	1.113	0.458	0.321	0.796	1.864
1814	chr10	121294511	121299376	+	0	NA	intron (NM_029057, intron 5 of 11)	intron (NM_029057, intron 5 of 11)	14246	NM_029057	74694	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik	TBC1 domain family, member 30	protein-coding	2.089	0.600	0.403	1.483	1.293	0.694	2.523	2.021	1.018	1.185	1.022	0.562	4.227	4.781	3.365	3.537	2.728	nan	0.882	0.486	0.424	0.537	0.569	0.628	1.018
15536	chr9	114676104	114677799	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	-11880	NM_146229	235661	Mm.128627	NM_146229	ENSMUSG00000032435	Dync1li1	1110053F02Rik|Dnclic1|LIC-1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding	2.410	2.216	1.036	2.103	0.985	0.436	1.439	1.534	1.324	1.980	0.442	0.593	2.566	2.690	2.942	3.449	1.728	2.138	1.107	0.687	0.169	0.642	nan	0.362	6.996
10737	chr4	137017474	137019357	+	0	NA	exon (NM_198248, exon 2 of 19)	exon (NM_198248, exon 2 of 19)	30280	NM_198248	230848	Mm.31068	NM_198248	ENSMUSG00000060862	Zbtb40	BC059177|C230087D24|Gm571|mKIAA0478	zinc finger and BTB domain containing 40	protein-coding	3.284	0.517	0.159	1.941	2.855	2.482	3.088	2.813	nan	2.274	0.824	0.528	2.522	5.206	2.500	2.938	2.021	nan	0.969	0.737	0.588	1.947	nan	0.405	4.960
14535	chr8	108086140	108090970	+	0	NA	Intergenic	Intergenic	496122	NR_077224	109215	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	8.113	5.430	1.711	6.496	6.366	4.802	5.912	8.412	5.563	7.021	3.211	1.791	7.587	8.479	8.055	9.824	6.898	7.855	2.527	2.309	2.112	nan	2.438	2.106	10.489
5896	chr16	21970907	21973105	+	0	NA	intron (NM_153404, intron 4 of 8)	intron (NM_153404, intron 4 of 8)	23536	NM_001289582	239759	Mm.33192	NM_153404	ENSMUSG00000044626	Liph	C130037N08Rik|D16Wsu119e|H06|Lpdlr|P3|PLA1B|lpd1|lpd2|mPA-PLA1	lipase, member H	protein-coding	4.450	0.781	0.408	2.780	2.150	2.074	2.611	3.089	2.602	3.141	0.647	0.792	5.641	7.540	3.492	5.656	4.872	5.058	0.776	0.879	0.616	0.899	0.746	0.495	6.042
7715	chr19	34266753	34269554	+	0	NA	Intergenic	Intergenic	-12780	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	6.904	9.111	3.850	6.189	4.545	2.471	12.646	13.092	5.082	6.257	3.685	3.392	6.335	10.148	9.334	9.505	9.364	4.480	1.004	1.830	1.554	0.904	0.500	0.478	7.325
2966	chr11	113544004	113546390	+	0	NA	intron (NM_001166503, intron 3 of 9)	intron (NM_001166503, intron 3 of 9)	20618	NM_001166503	69806	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	8.906	13.129	3.093	9.832	3.276	2.813	6.827	6.534	5.348	10.037	5.842	3.947	6.674	7.977	7.983	9.790	5.433	8.758	5.912	nan	2.537	7.072	2.999	3.365	12.057
15286	chr9	71798799	71802301	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-28948	NM_001304362	68178	Mm.99961	NM_026599	ENSMUSG00000032232	Cgnl1	4933421H10Rik|9930020M10Rik|AI503810|Jacop	cingulin-like 1	protein-coding	1.754	6.055	4.015	1.399	0.911	0.393	0.725	0.793	1.839	1.572	0.676	0.806	1.124	1.239	nan	1.437	0.770	1.856	nan	1.378	0.571	0.988	0.787	0.420	1.199
14122	chr8	34780151	34786145	+	0	NA	Intergenic	(TTCC)n|Simple_repeat|Simple_repeat	-24462	NM_176933	319520	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	2.789	2.388	1.296	1.351	1.549	0.956	3.062	5.183	2.826	2.312	6.936	6.515	3.207	3.346	2.534	2.435	1.976	2.310	0.614	1.057	1.048	1.457	0.593	0.551	nan
5694	chr15	101146440	101153592	+	0	NA	Intergenic	ID4|SINE|ID	21494	NM_001277257	11482	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	5.281	4.736	2.204	4.375	3.975	2.707	11.750	8.950	4.341	3.856	10.788	6.782	7.629	6.239	6.447	5.783	5.219	5.583	1.305	1.256	1.283	1.453	1.075	0.880	4.410
7424	chr18	80805267	80810327	+	0	NA	intron (NM_001201569, intron 12 of 29)	intron (NM_001201569, intron 12 of 29)	-94726	NM_001164109	18018	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	1.798	11.117	5.898	2.777	1.777	0.804	1.356	2.418	2.197	2.956	1.496	0.686	2.000	2.669	1.930	2.879	1.946	2.179	1.523	nan	1.428	2.018	1.096	0.894	2.460
4330	chr13	100114093	100115237	+	0	NA	TTS (NM_011353)	TTS (NM_011353)	6646	NM_011353	20365	Mm.286177	NM_011353	ENSMUSG00000021643	Serf1	4F5|Msmac1|m4F5	small EDRK-rich factor 1	protein-coding	5.299	10.837	2.977	8.362	1.031	0.327	5.011	5.228	3.998	7.014	4.683	2.879	4.831	4.994	8.786	8.206	2.950	7.585	5.586	1.216	1.200	6.259	1.918	1.599	11.646
5385	chr15	77703797	77705356	+	0	NA	intron (NM_001134802, intron 1 of 4)	RLTR42-int|LTR|ERVK	5687	NM_001134802	666348	Mm.303207	NM_001134802	ENSMUSG00000071716	Apol7e	ENSMUSG00000071716	apolipoprotein L 7e	protein-coding	5.339	1.629	0.830	4.443	3.468	2.425	4.633	5.010	2.679	3.030	1.821	1.243	3.868	3.574	2.702	3.218	1.815	4.213	1.135	1.687	2.615	1.727	1.866	1.606	3.772
10893	chr4	148537987	148548847	+	0	NA	intron (NM_020009, intron 46 of 57)	(CA)n|Simple_repeat|Simple_repeat	-15010	NM_016699	50912	Mm.266635	NM_016699	ENSMUSG00000017264	Exosc10	PM-Scl|PM/Scl-100|Pmscl2|RRP6|p2|p3|p4	exosome component 10	protein-coding	7.038	nan	2.040	4.886	4.827	3.858	5.348	6.879	4.227	5.179	4.760	3.053	4.633	8.285	5.483	5.679	4.212	5.829	1.247	1.192	1.251	1.564	1.978	2.144	7.351
15429	chr9	101062126	101064119	+	0	NA	Intergenic	L1Md_T|LINE|L1	-11640	NM_001100451	77853	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	male-specific lethal 2 homolog (Drosophila)	protein-coding	2.475	1.229	0.331	1.781	0.514	0.200	0.960	2.734	2.990	2.901	0.764	0.645	2.306	3.926	1.704	2.582	2.245	2.963	0.778	0.173	0.123	0.388	0.562	0.094	2.174
13372	chr7	87468511	87470103	+	0	NA	intron (NM_001317397, intron 2 of 3)	intron (NM_001317397, intron 2 of 3)	24205	NM_011661	22173	Mm.238127	NM_011661	ENSMUSG00000004651	Tyr	Oca1|albino|c|skc35	tyrosinase	protein-coding	5.740	8.270	4.116	7.409	3.268	2.121	4.991	6.279	nan	4.485	3.799	2.086	6.404	7.171	7.643	nan	5.298	6.364	3.805	2.296	2.018	nan	3.207	2.126	8.103
11966	chr5	148704534	148707529	+	0	NA	Intergenic	MER53|DNA|hAT	-35809	NR_028285	70138	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	4.793	8.692	3.309	4.993	1.617	0.527	5.598	4.435	2.596	3.384	2.107	1.515	4.811	4.304	4.895	nan	4.613	4.154	2.066	1.267	1.004	1.531	1.924	1.478	6.095
773	chr1	158387153	158405536	+	0	NA	intron (NM_007495, intron 1 of 22)	intron (NM_007495, intron 1 of 22)	34040	NM_001205204	11899	Mm.329586	NM_007495	ENSMUSG00000026587	Astn1	Astn|GC14|mKIAA0289	astrotactin 1	protein-coding	10.472	2.268	1.560	4.168	4.793	2.886	5.863	4.813	nan	5.377	2.789	1.178	7.286	7.004	5.998	nan	8.599	5.034	nan	1.540	1.280	1.820	nan	0.997	8.421
1247	chr10	41867972	41870475	+	0	NA	intron (NM_001162908, intron 1 of 9)	MT2B1|LTR|ERVL	-18216	NM_001013370	140742	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	3.558	0.726	0.156	1.426	0.928	0.738	1.071	1.805	1.917	1.665	2.115	1.168	1.469	3.481	2.039	3.265	1.841	3.068	0.518	0.264	0.288	0.600	0.369	0.288	4.224
13285	chr7	74722655	74724662	+	0	NA	Intergenic	Intergenic	-168878	NM_001038643	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	5.673	0.602	0.320	4.420	3.472	2.503	4.341	4.991	4.852	5.188	2.813	0.971	10.014	10.051	2.810	2.904	3.571	5.830	0.764	1.022	0.699	0.486	0.718	0.649	nan
14967	chr9	37295755	37297102	+	0	NA	intron (NM_001081429, intron 12 of 15)	B2_Mm2|SINE|B2	-40690	NM_001145960	56857	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	9.136	12.618	3.309	11.248	3.551	3.505	7.041	9.009	6.549	13.017	5.688	3.247	8.412	10.382	9.245	12.913	5.384	11.082	5.872	3.240	3.556	7.775	3.388	3.819	18.658
11014	chr5	9101665	9116429	+	0	NA	intron (NM_001081029, intron 2 of 4)	intron (NM_001081029, intron 2 of 4)	8310	NM_001081029	652925	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	6.844	4.766	2.341	6.525	4.703	2.617	5.268	5.037	6.996	9.356	1.322	1.344	7.607	10.091	8.591	8.173	7.344	9.255	0.743	0.971	0.702	0.781	0.542	0.283	6.624
1576	chr10	87851528	87854773	+	0	NA	Intergenic	Intergenic	-5115	NM_001314010	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	5.818	15.091	8.112	4.073	6.227	4.305	2.867	3.876	3.290	3.871	1.711	1.025	2.449	4.717	3.685	4.487	3.235	nan	0.680	1.088	0.910	nan	nan	0.659	5.692
3448	chr12	77403997	77409615	+	0	NA	intron (NR_045554, intron 7 of 11)	L1Md_T|LINE|L1	-3335	NM_001252616	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	6.150	8.254	4.286	2.673	2.075	1.005	1.788	1.266	2.407	2.458	1.206	0.787	2.902	3.287	3.257	nan	3.026	5.985	0.841	0.745	0.574	0.952	0.389	0.253	5.717
7133	chr18	35862233	35863390	+	0	NA	Intergenic	Intergenic	32993	NM_133687	67393	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	6.857	8.321	2.249	7.819	2.873	1.469	3.570	5.177	3.850	5.411	3.265	1.601	4.324	3.820	6.125	7.167	4.192	7.145	3.562	2.479	1.100	4.422	2.522	1.824	10.159
8842	chr2	154258404	154267167	+	0	NA	exon (NM_175167, exon 4 of 15)	exon (NM_175167, exon 4 of 15)	4906	NM_175167	71425	Mm.389341	NM_175167	ENSMUSG00000067998	Bpifb9a	4833413D08Rik|AI413838	BPI fold containing family B, member 9A	protein-coding	4.574	2.612	1.635	3.304	3.695	2.673	3.913	5.521	nan	nan	2.564	2.362	nan	5.758	3.909	4.808	5.053	nan	nan	3.404	3.422	2.767	4.592	4.659	3.961
6136	chr16	56869954	56875185	+	0	NA	intron (NM_019631, intron 1 of 5)	AT_rich|Low_complexity|Low_complexity	13594	NM_019631	56277	Mm.262328	NM_019631	ENSMUSG00000022754	Tmem45a	C630002M10Rik|M32486|p19.5	transmembrane protein 45a	protein-coding	1.104	0.656	0.443	0.784	0.699	0.275	0.688	2.481	2.109	0.941	8.846	1.795	0.520	1.164	0.646	nan	0.764	1.033	nan	0.560	0.164	0.379	0.247	0.121	0.517
5091	chr15	30313342	30316262	+	0	NA	intron (NM_008729, intron 1 of 22)	intron (NM_008729, intron 1 of 22)	142209	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	4.664	0.394	0.493	1.083	0.607	0.400	6.483	1.773	2.739	1.760	3.145	0.437	3.650	2.366	5.417	4.953	6.130	4.808	0.458	0.144	0.536	0.614	0.774	0.357	4.024
11136	chr5	32759999	32763914	+	0	NA	intron (NM_177298, intron 3 of 7)	ORR1B1-int|LTR|ERVL-MaLR	-15614	NM_001347332	320951	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	7.902	7.920	3.297	8.663	6.232	4.193	8.540	7.202	5.968	10.001	7.383	4.392	7.095	9.535	8.726	8.860	8.012	8.316	7.584	4.446	3.231	6.065	5.913	6.567	7.432
7441	chr18	83591970	83596702	+	0	NA	Intergenic	Intergenic	-268452	NR_045361	70960	Mm.410834	NR_045361		4921531P14Rik	1700108N05Rik	RIKEN cDNA 4921531P14 gene	ncRNA	nan	0.548	0.365	2.339	1.705	0.978	0.746	1.628	3.300	6.592	0.560	0.461	1.530	2.089	2.329	3.509	1.185	nan	0.482	0.448	0.351	0.578	0.171	0.281	nan
10943	chr4	150501879	150503428	+	0	NA	intron (NM_001085492, intron 8 of 22)	RSINE1|SINE|B4	149521	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.106	nan	0.062	0.512	0.179		0.112	0.353	0.210	0.292	0.107	0.130	0.179	0.035	0.292	0.268	0.135	0.149	6.202	1.122	1.087	9.813	2.166	3.336	0.420
6776	chr17	63955234	63958785	+	0	NA	intron (NM_008000, intron 3 of 13)	intron (NM_008000, intron 3 of 13)	19037	NM_008000	14158	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	1.411	2.022	1.571	1.367	1.243	0.759	2.212	2.243	nan	1.251	0.540	0.418	1.703	nan	1.995	1.424	1.975	1.813	5.586	4.083	4.599	3.235	7.601	8.331	0.633
6064	chr16	38622695	38626406	+	0	NA	exon (NM_020260, exon 5 of 12)	exon (NM_020260, exon 5 of 12)	61736	NM_026407	67846	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	2.638	0.917	0.273	3.662	1.245	0.593	0.620	0.996	2.909	2.703	0.443	0.457	1.845	2.889	2.594	5.577	1.582	4.990	0.571	0.267	0.321	0.748	0.234	0.177	4.070
6255	chr16	95496796	95498983	+	0	NA	intron (NM_001302152, intron 3 of 10)	intron (NM_001302152, intron 3 of 10)	32476	NM_001302179	13876	Mm.164531	NM_133659	ENSMUSG00000040732	Erg	D030036I24Rik	avian erythroblastosis virus E-26 (v-ets) oncogene related	protein-coding	6.450	1.564	1.186	3.722	4.872	3.578	3.586	5.884	3.625	4.288	6.654	1.241	6.053	7.133	3.837	5.015	4.726	5.660	nan	1.031	1.143	0.490	0.757	0.720	4.536
10991	chr4	154933402	154943089	+	0	NA	Intergenic	B4A|SINE|B4	-10168	NM_178931	230979	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	6.185	5.163	2.363	5.745	4.075	3.035	5.935	5.513	5.018	5.542	3.944	3.795	4.364	6.354	5.174	6.727	4.235	5.857	2.172	1.494	1.835	1.874	1.584	1.631	7.562
15065	chr9	50334018	50336724	+	0	NA	Intergenic	(CACCAT)n|Simple_repeat|Simple_repeat	-102189	NR_131161	71873		NR_131161	ENSMUSG00000110916	2310003N18Rik	-	RIKEN cDNA 2310003N18 gene	ncRNA	6.214	4.978	1.797	2.910	1.318	1.036	1.411	4.444	2.782	4.651	6.020	3.310	2.292	3.378	nan	4.903	2.819	5.029	2.180	1.547	0.993	nan	1.988	1.688	nan
12870	chr6	147045702	147047665	+	0	NA	intron (NM_145573, intron 2 of 7)	B3A|SINE|B2	3913	NM_145573	232536	Mm.46656	NM_145573	ENSMUSG00000040112	Mrps35	MDSO23|MRP-S28|MRPS28	mitochondrial ribosomal protein S35	protein-coding	nan	13.875	7.572	1.763	0.730	0.203	0.849	nan	1.192	nan	2.649	0.929	nan	0.488	0.814	nan	0.811	1.398	2.423	nan	1.217	nan	1.760	1.159	nan
7162	chr18	36879112	36880632	+	0	NA	Intergenic	L1VL2|LINE|L1	-40433	NR_076393	627427		NR_076393	ENSMUSG00000063514	Gm6756	EG627427	3-phosphoglycerate dehydrogenase pseudogene	pseudo	4.573	0.492	1.037	2.010	2.591	2.977	4.144	5.093	2.462	2.106	1.626	2.148	3.448	3.753	3.342	2.464	2.105	3.785	0.873	1.185	0.887	0.393	0.724	0.534	1.860
6250	chr16	94827564	94831624	+	0	NA	intron (NM_001025590, intron 2 of 2)	intron (NM_001025590, intron 2 of 2)	27096	NM_001025590	16522	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding	3.821	2.087	1.825	2.671	5.199	3.684	2.793	3.097	nan	2.710	1.485	1.813	4.155	4.693	nan	3.469	3.876	3.634	nan	1.402	1.351	0.986	1.918	1.698	2.439
5271	chr15	66655151	66657971	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-14209	NM_009375	21819	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	2.467	8.481	2.660	2.044	0.684	0.372	0.672	0.711	1.836	1.314	0.826	0.312	0.682	0.975	1.739	1.478	1.058	1.876	0.821	0.983	0.671	0.783	0.532	0.241	2.013
8395	chr2	79445436	79449544	+	0	NA	Intergenic	RLTR11A2|LTR|ERVK	9146	NM_010894	18012	Mm.4636	NM_010894	ENSMUSG00000034701	Neurod1	BETA2|BHF-1|Nd1|Neurod|bHLHa3	neurogenic differentiation 1	protein-coding	2.839	0.487	0.552	nan	0.521	0.349	3.843	5.556	3.708	2.162	4.284	4.495	3.456	1.828	2.141	4.430	3.343	2.568	0.900	0.756	0.656	0.725	0.696	0.350	nan
1911	chr11	4136034	4138054	+	0	NA	intron (NM_027859, intron 4 of 8)	intron (NM_027859, intron 4 of 8)	1884	NM_027859	71673	Mm.240586	NM_027859	ENSMUSG00000003581	Rnf215	0610009J22Rik|AW557025|C77903	ring finger protein 215	protein-coding	4.270	6.950	2.078	2.939	1.451	0.786	1.111	0.945	1.459	1.965	1.576	0.614	1.038	2.160	1.923	1.717	0.950	1.866	0.716	nan	0.890	0.503	0.305	0.250	4.089
6021	chr16	33591525	33595172	+	0	NA	intron (NM_001083902, intron 5 of 11)	intron (NM_001083902, intron 5 of 11)	74753	NM_001083902	171286	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	3.406	1.322	1.028	3.552	3.999	2.318	2.810	4.573	2.290	2.682	0.844	0.906	1.810	3.455	2.435	2.584	2.029	4.302	2.297	1.637	1.317	2.330	2.632	2.474	nan
2856	chr11	103246984	103256378	+	0	NA	intron (NM_016896, intron 1 of 15)	B1_Mus1|SINE|Alu	15720	NM_016896	53859	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	4.813	1.165	0.527	4.068	4.205	2.194	4.787	5.275	nan	3.780	2.962	1.982	4.583	7.300	4.952	6.273	4.117	6.216	0.570	0.781	0.511	nan	0.526	0.448	4.604
11354	chr5	74532641	74534453	+	0	NA	Intergenic	Intergenic	-1805	NM_001114660	212986	Mm.134147	NM_178672	ENSMUSG00000062110	Scfd2	E430013M20Rik|STXBP1L1	Sec1 family domain containing 2	protein-coding	5.346	0.537	0.691	4.065	6.447	3.585	7.893	3.292	6.569	6.569	4.472	4.477	4.198	7.989	3.011	5.681	7.230	4.599	0.876	1.472	1.538	0.495	1.382	1.154	4.647
2199	chr11	53664942	53668162	+	0	NA	intron (NM_009012, intron 21 of 24)	L1M2|LINE|L1	-31850	NM_008355	16163	Mm.1284	NM_008355	ENSMUSG00000020383	Il13	Il-13	interleukin 13	protein-coding	5.236	4.141	1.487	5.880	2.741	1.853	6.438	3.546	5.437	4.870	1.582	2.429	5.849	4.617	6.585	8.425	5.256	6.935	4.453	2.037	2.479	2.904	2.923	2.163	6.213
9256	chr3	40885261	40888303	+	0	NA	Intergenic	RLTR10B2|LTR|ERVK	-7495	NM_026622	269423	Mm.32373	NM_026622	ENSMUSG00000037818	Abhd18	2310068E01Rik|3110057O12Rik|AI645591	abhydrolase domain containing 18	protein-coding	6.250	6.447	2.254	5.972	3.240	2.156	9.792	6.088	nan	6.234	4.424	2.608	7.915	8.122	7.222	7.094	6.046	5.693	nan	1.846	3.438	nan	2.917	4.495	9.683
7667	chr19	25068736	25070885	+	0	NA	intron (NM_028785, intron 4 of 47)	intron (NM_028785, intron 4 of 47)	70281	NM_028785	76088	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	3.503	1.640	1.223	2.358	1.968	0.960	3.089	3.043	2.152	2.103	nan	1.069	2.645	4.380	1.843	2.070	2.130	3.294	nan	1.926	0.671	0.487	nan	0.849	1.863
8358	chr2	73051304	73052978	+	0	NA	Intergenic	Intergenic	-71695	NM_001018042	20687	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	nan	7.777	2.284	5.709	1.432	0.472	4.698	5.398	2.662	6.053	3.697	3.176	4.535	5.267	6.684	9.353	5.576	7.222	3.784	1.673	1.064	3.527	1.911	1.979	11.898
5004	chr15	3219324	3223722	+	0	NA	Intergenic	Intergenic	-49244	NM_001042613	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	11.852	3.675	2.375	8.096	6.755	4.691	9.405	12.597	6.765	6.133	1.612	2.354	10.300	7.700	8.394	7.596	10.184	7.775	1.411	2.731	2.877	1.791	2.858	2.841	5.617
6585	chr17	35257732	35259437	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-4510	NM_010380	14964	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	8.176	16.148	4.838	9.018	4.435	3.090	8.927	7.054	4.823	7.528	5.973	3.908	5.866	10.139	9.249	11.943	6.872	7.873	4.672	2.489	3.994	6.542	4.236	4.054	16.174
6352	chr17	15066026	15068020	+	0	NA	Intergenic	Intergenic	13964	NM_001034891	381062	Mm.393767	NM_183133	ENSMUSG00000036552	Ermard	2210404J11Rik|2410011O22Rik|AI448938	ER membrane associated RNA degradation	protein-coding	nan	0.991	0.933	0.357	0.535	0.531	2.898	2.160	1.595	1.596	0.910	1.192	1.725	4.832	2.194	1.319	1.396	1.092	1.084	0.678	0.286	0.701	0.932	0.822	nan
3002	chr11	116289974	116299019	+	0	NA	intron (NM_001347636, intron 10 of 18)	intron (NM_001347636, intron 10 of 18)	12242	NM_016857	53413	Mm.22530	NM_016857	ENSMUSG00000020792	Exoc7	Exo70|sec70	exocyst complex component 7	protein-coding	6.232	8.903	3.878	5.360	3.846	2.543	nan	8.346	4.203	5.022	6.389	4.161	4.609	6.130	5.099	4.953	4.138	nan	4.791	nan	2.763	4.657	3.789	3.511	5.339
15296	chr9	72913760	72922698	+	0	NA	TTS (NM_175485)	TTS (NM_175485)	-7421	NM_028116	72135	Mm.273605	NM_028116	ENSMUSG00000034910	Pygo1	2600014C22Rik	pygopus 1	protein-coding	5.596	1.814	0.866	3.855	2.946	1.916	4.687	6.064	4.266	3.741	7.096	3.793	5.733	6.477	nan	5.666	4.254	4.810	nan	2.298	2.098	2.058	4.008	3.359	6.818
6710	chr17	48058629	48063558	+	0	NA	Intergenic	B3|SINE|B2	-22800	NM_029689	76651	Mm.76918	NM_029689	ENSMUSG00000094928	1700122O11Rik	-	RIKEN cDNA 1700122O11 gene	protein-coding	5.310	10.470	3.713	5.992	2.548	1.887	11.393	6.240	3.884	9.038	3.249	3.429	6.475	7.268	8.898	10.375	7.487	6.999	4.141	2.242	2.918	4.652	3.044	4.090	14.688
8692	chr2	132403092	132404517	+	0	NA	Intergenic	L1M2|LINE|L1	-18357	NM_144944	246313	Mm.283777	NM_144944	ENSMUSG00000050558	Prokr2	B830005M06Rik|EG-VEGRF2|Gpcr73l1|Gpr73l1|PKR2	prokineticin receptor 2	protein-coding	12.960	19.068	4.807	13.414	8.458	6.056	11.222	12.406	7.837	17.712	10.888	4.309	9.851	11.637	10.323	14.714	9.100	11.002	nan	3.760	4.603	7.901	4.121	5.190	19.970
8415	chr2	84776826	84780126	+	0	NA	Intergenic	ORR1E-int|LTR|ERVL-MaLR	-3047	NM_009776	12258	Mm.38888	NM_009776	ENSMUSG00000023224	Serping1	C1INH|C1nh	serine (or cysteine) peptidase inhibitor, clade G, member 1	protein-coding	4.726	3.843	2.594	7.051	5.587	3.106	1.466	2.422	2.944	3.126	1.969	1.172	1.434	2.988	1.943	3.230	2.163	3.393	0.995	2.153	1.729	2.075	2.329	1.674	4.281
7396	chr18	75565893	75569944	+	0	NA	intron (NM_201354, intron 6 of 11)	(CATATA)n|Simple_repeat|Simple_repeat	53273	NR_045879	100038353	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	ENSMUSG00000073534	predicted gene 10532	ncRNA	2.238	nan	1.020	2.251	3.359	2.987	7.530	1.363	2.916	nan	1.986	2.475	6.713	6.096	4.787	1.282	1.011	0.926	1.039	nan	2.663	1.793	1.876	1.653	0.802
4173	chr13	56276800	56280454	+	0	NA	Intergenic	ORR1B2|LTR|ERVL-MaLR	17924	NM_019568	57266	Mm.30211	NM_019568	ENSMUSG00000021508	Cxcl14	1110031L23Rik|1200006I23Rik|AI414372|BMAC|BRAK|KS1|Kec|MIP-2g|MIP2gamma|NJAC|Scyb14|bolekine	chemokine (C-X-C motif) ligand 14	protein-coding	3.762	2.192	0.734	2.848	0.863	0.306	1.129	1.153	1.681	1.869	0.917	0.410	1.227	1.656	1.787	2.431	1.196	nan	0.753	0.503	0.645	1.956	0.228	0.148	4.388
6084	chr16	45037151	45040524	+	0	NA	Intergenic	Intergenic	-55216	NM_026439	67896	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	9.417	0.801	0.863	2.043	2.702	1.965	3.344	6.097	4.863	4.503	5.337	2.998	5.487	5.175	3.653	4.014	3.891	4.035	0.783	1.161	1.029	0.468	0.569	0.369	2.971
6427	chr17	26517107	26525408	+	0	NA	Intergenic	(A)n|Simple_repeat|Simple_repeat	-12785	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	6.097	0.720	0.300	3.037	1.725	0.778	9.286	4.590	2.575	3.278	1.337	0.843	8.247	6.646	7.779	nan	7.129	4.503	2.055	1.385	0.876	1.888	1.739	1.144	14.003
1646	chr10	95017847	95028833	+	0	NA	Intergenic	Intergenic	-78762	NM_018797	54712	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	5.975	3.443	1.228	4.730	7.317	6.058	4.562	5.170	4.160	7.136	nan	2.612	5.275	7.021	5.624	5.166	5.268	5.282	nan	1.701	1.965	nan	2.079	2.280	6.614
9161	chr3	19465603	19468586	+	0	NA	Intergenic	L1Md_A|LINE|L1	-41501	NM_001163536	66326	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	5.204	nan	0.615	4.087	2.470	1.945	4.175	3.489	2.932	5.268	1.911	1.028	6.432	6.346	2.977	2.833	2.508	5.698	4.000	3.679	2.888	5.224	3.383	2.222	3.423
3010	chr11	116613474	116615481	+	0	NA	intron (NM_172572, intron 1 of 18)	RMER1C|Other|Other	9775	NM_001167680	217344	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	7.353	nan	0.237	9.516	4.357	2.011	5.607	nan	9.481	nan	0.758	0.790	0.851	0.867	0.676	0.913	0.640	1.183	3.683	4.656	1.618	3.847	2.589	1.125	4.954
11417	chr5	91217144	91228312	+	0	NA	Intergenic	Intergenic	60348	NR_040428	100503265	Mm.125059	NR_040428	ENSMUSG00000107198	Gm19619	-	predicted gene, 19619	ncRNA	4.849	0.567	0.456	3.266	3.601	2.545	5.942	4.395	3.798	4.819	1.531	1.175	6.008	6.500	5.869	5.763	4.592	6.163	0.596	0.530	0.396	0.464	0.374	0.349	3.984
4286	chr13	93475691	93476922	+	0	NA	intron (NM_021310, intron 1 of 10)	L1Md_T|LINE|L1	23502	NM_021310	57748	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	3.190	1.413	0.371	0.830	0.868	0.494	2.496	3.959	0.576	1.275	0.336	0.284	3.769	3.383	3.428	2.854	2.309	3.646	0.831	0.727	0.299	0.889	0.584	0.479	2.993
3690	chr12	106203887	106205816	+	0	NA	Intergenic	Intergenic	194588	NM_001029843	22367	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	1.279	1.085	0.655	nan	0.670	0.383	0.435	nan	nan	nan	0.250	0.505	0.225	nan	0.630	0.696	0.573	0.750	5.142	5.295	3.240	3.017	8.878	8.016	nan
10449	chr4	119410528	119412552	+	0	NA	intron (NM_029286, intron 1 of 14)	intron (NM_029286, intron 1 of 14)	3981	NM_001270435	73332	Mm.425204	NM_028506	ENSMUSG00000028637	Ccdc30	1700001O02Rik|1700041C02Rik|1700111D19Rik|4930445I03Rik	coiled-coil domain containing 30	protein-coding	7.744	3.350	1.858	4.511	3.274	1.387	1.794	3.372	2.828	3.733	1.155	1.227	3.196	6.371	5.016	4.013	5.040	3.159	5.865	2.978	1.772	3.062	3.335	1.915	6.741
744	chr1	153600288	153606583	+	0	NA	Intergenic	RSINE1|SINE|B4	-49602	NM_026380	67792	Mm.379143	NM_026380	ENSMUSG00000042671	Rgs8	6530413N01Rik	regulator of G-protein signaling 8	protein-coding	7.156	4.572	2.081	4.506	3.315	1.603	5.484	5.299	nan	5.417	2.580	2.527	6.421	6.468	5.249	9.204	6.171	5.600	nan	2.199	0.993	2.295	nan	1.550	5.484
12804	chr6	136498389	136500733	+	0	NA	Intergenic	Intergenic	-19290	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	4.689	4.615	2.810	3.151	3.421	1.663	5.653	5.505	4.437	4.172	0.955	2.552	4.713	5.439	4.644	7.125	8.100	6.882	2.821	1.367	0.842	1.104	1.359	0.812	2.974
15187	chr9	63836656	63841990	+	0	NA	Intergenic	Intergenic	-81329	NM_016769	17127	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	3.976	1.028	0.642	2.740	2.407	1.251	4.315	4.308	3.120	3.066	5.070	2.586	3.663	6.469	5.387	5.111	3.056	4.481	nan	1.195	0.926	1.029	0.581	0.443	7.183
7810	chr19	45676420	45677519	+	0	NA	Intergenic	Intergenic	-16776	NM_013907	30838	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	1.885	0.587	0.583	nan	0.982	0.347	0.994	1.128	1.452	2.000	0.953	0.318	2.433	3.320	2.385	3.430	2.692	2.280	0.290	0.337	0.401	0.315	0.516	0.163	6.401
9041	chr2	167803632	167805252	+	0	NA	Intergenic	B1_Mur3|SINE|Alu	113265	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	3.461	0.918	0.765	4.312	2.060	1.904	4.353	7.265	3.168	4.035	1.511	1.065	5.150	5.750	4.775	6.580	3.563	6.957	6.565	1.541	2.784	9.171	4.368	3.100	6.595
7068	chr18	23600174	23606037	+	0	NA	intron (NM_001285817, intron 10 of 19)	intron (NM_001285817, intron 10 of 19)	105623	NM_001285810	13527	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	1.600	0.568	0.369	1.293	1.126	0.483	0.968	1.704	1.578	1.262	0.633	0.562	1.078	1.090	1.262	nan	1.097	2.136	nan	2.670	1.209	5.469	1.716	0.885	1.026
12404	chr6	87219769	87224732	+	0	NA	intron (NM_054041, intron 12 of 17)	intron (NM_054041, intron 12 of 17)	113525	NM_054041	69538	Mm.232525	NM_054041	ENSMUSG00000033420	Antxr1	2310008J16Rik|2810405N18Rik|Antrx1|Tem8	anthrax toxin receptor 1	protein-coding	5.482	0.919	0.581	nan	1.890	0.666	8.980	5.324	2.187	2.396	7.072	3.910	5.536	5.514	6.590	9.221	6.392	4.486	nan	1.322	0.808	3.280	1.454	0.799	7.388
5485	chr15	81969959	81980202	+	0	NA	Intergenic	MMERVK9C_I-int|LTR|ERVK	-5460	NM_025503	66346	Mm.54292	NM_025503	ENSMUSG00000061633	1700029P11Rik	-	RIKEN cDNA 1700029P11 gene	protein-coding	nan	nan	2.286	nan	2.035	1.210	nan	9.794	2.907	nan	nan	2.550	4.674	nan	6.853	5.031	nan	4.645	2.594	1.267	1.223	nan	1.800	1.760	5.068
4562	chr14	28148631	28151306	+	0	NA	intron (NM_177814, intron 13 of 15)	intron (NM_177814, intron 13 of 15)	-355505	NM_009524	22418	Mm.287544	NM_009524	ENSMUSG00000021994	Wnt5a	8030457G12Rik|Wnt-5a	wingless-type MMTV integration site family, member 5A	protein-coding	5.806	7.429	2.394	5.521	2.455	1.353	2.988	8.182	3.477	3.439	4.763	2.792	2.421	2.995	2.905	2.881	nan	nan	6.766	5.149	2.881	6.581	5.929	3.495	4.359
13057	chr7	29138135	29139803	+	0	NA	intron (NR_045676, intron 3 of 16)	intron (NR_045676, intron 3 of 16)	4036	NR_045676	233046	Mm.465324	NM_145149	ENSMUSG00000030589	Rasgrp4	-	RAS guanyl releasing protein 4	protein-coding	1.383	1.648	0.789	0.898	0.851	0.897	4.049	5.381	1.524	1.433	0.771	0.670	7.166	3.532	2.926	4.395	3.085	3.268	0.806	0.569	0.314	1.056	0.332	0.252	1.836
287	chr1	72958183	72962847	+	0	NA	Intergenic	Intergenic	55384	NM_009407	21958	Mm.425024	NM_009407	ENSMUSG00000026182	Tnp1	Stp-1|TP1|Tp-1	transition protein 1	protein-coding	2.659	1.019	0.552	1.167	0.718	0.423	2.098	2.846	2.345	2.183	0.515	0.475	2.443	nan	3.154	6.267	3.884	3.626	4.205	4.459	3.044	6.077	5.845	4.859	2.634
4914	chr14	100021756	100023729	+	0	NA	exon (NM_010636, exon 3 of 7)	exon (NM_010636, exon 3 of 7)	127054	NM_010636	16597	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0.457	nan	0.200	0.614	0.500	0.061	0.740	2.284	1.979	1.176	4.705	4.158	0.779	0.695	1.226	1.018	0.472	1.028	0.983	0.366	0.124	1.617	0.419	0.156	nan
12773	chr6	134581085	134585972	+	0	NA	Intergenic	RCHARR1|DNA|hAT-Charlie	-16615	NM_008514	16974	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	2.538	1.711	0.918	3.718	2.419	1.901	5.034	4.945	3.208	3.000	2.117	2.996	4.751	6.073	5.497	4.920	6.403	2.966	nan	1.672	2.302	2.824	3.252	3.172	4.376
12131	chr6	31339436	31341371	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	58370	NR_040300	100503869	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845|OTTMUSG00000014733	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	2.913	1.109	0.614	3.936	1.565	0.478	5.915	4.224	2.957	3.308	1.610	1.178	5.075	5.430	5.866	7.455	3.409	4.711	4.109	1.710	1.174	3.579	2.044	1.276	4.834
932	chr1	181651761	181653601	+	0	NA	Intergenic	Intergenic	-141230	NM_207280	403180	Mm.220754	NM_207280	ENSMUSG00000050625	Ccdc121	6530421E24Rik|Gm755	coiled-coil domain containing 121	protein-coding	5.084	0.440	0.573	1.129	1.252	1.357	2.587	2.860	1.832	2.433	0.447	0.234	2.819	4.173	2.239	4.316	5.371	1.598	0.978	0.652	1.249	0.528	0.618	0.520	2.715
2595	chr11	87367242	87369244	+	0	NA	intron (NR_106195, intron 8 of 8)	intron (NR_106195, intron 8 of 8)	-9249	NM_177167	320472	Mm.341988	NM_177167	ENSMUSG00000046442	Ppm1e	AW049266|B930008A12Rik|POPX1|PP2CH|mKIAA1072	protein phosphatase 1E (PP2C domain containing)	protein-coding	4.364	0.771	0.217	4.036	1.724	0.873	3.407	2.505	2.497	2.206	1.061	1.000	2.260	3.235	3.069	3.144	2.347	4.228	1.463	1.451	1.151	nan	1.664	0.884	2.194
3908	chr13	28828761	28833023	+	0	NA	intron (NR_045053, intron 2 of 8)	RSINE1|SINE|B4	54530	NR_045054	72518	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	7.460	0.526	0.624	3.382	6.297	3.064	8.544	7.257	5.325	6.049	4.730	1.679	6.494	9.560	6.567	7.622	4.442	6.839	1.670	2.210	1.251	2.038	2.743	1.815	7.572
3858	chr13	18127696	18136097	+	0	NA	intron (NM_175006, intron 6 of 7)	intron (NM_175006, intron 6 of 7)	-31694	NR_046032	73992	Mm.159110	NR_046032		4930448F12Rik	-	RIKEN cDNA 4930448F12 gene	ncRNA	4.220	0.514	0.547	2.890	6.621	4.299	3.422	2.012	4.580	6.782	0.660	0.629	4.414	6.084	2.986	4.078	nan	5.190	0.684	0.878	0.584	0.417	0.884	0.590	nan
8927	chr2	160617477	160618974	+	0	NA	Intergenic	Intergenic	-27672	NM_009408	21969	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	5.644	0.791	1.044	2.725	2.559	1.049	1.174	2.340	2.290	3.560	1.431	0.633	4.526	4.133	2.273	3.138	3.626	4.101	nan	0.896	0.550	0.910	0.887	0.591	3.230
515	chr1	121106014	121107336	+	0	NA	intron (NR_110450, intron 2 of 2)	intron (NR_110450, intron 2 of 2)	19270	NR_110450	98452	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	4.611	1.038	0.399	3.721	3.679	2.125	3.744	4.121	3.104	5.470	1.906	1.099	4.542	4.855	4.420	7.069	3.956	3.023	1.163	1.330	0.877	1.592	0.950	0.723	3.976
14727	chr8	125046301	125053032	+	0	NA	Intergenic	Intergenic	-4529	NM_174853	244667	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	9.504	2.027	0.681	9.069	4.821	3.295	5.188	10.841	5.218	6.318	5.924	2.954	8.526	9.196	7.749	11.134	6.733	10.199	nan	1.256	1.290	3.108	0.803	nan	14.303
15582	chr9	118960065	118963584	+	0	NA	intron (NM_133710, intron 1 of 7)	MTB_Mm|LTR|ERVL-MaLR	35288	NM_133710	69274	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	5.627	0.491	0.148	2.629	2.822	1.103	9.429	10.332	4.010	5.856	3.065	4.196	7.359	8.809	5.258	6.627	3.478	3.824	3.926	2.130	1.567	4.428	nan	2.554	5.850
11278	chr5	65716152	65719337	+	0	NA	Intergenic	ID_B1|SINE|B4	-19888	NM_001081321	71521	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	2.494	5.662	6.633	2.022	2.379	2.164	1.639	0.976	2.122	1.785	1.302	1.625	1.265	1.652	1.627	2.162	2.143	2.438	1.984	2.271	2.138	nan	2.118	1.424	1.939
10555	chr4	128697589	128703058	+	0	NA	intron (NM_018774, intron 1 of 14)	L1MB4|LINE|L1	11585	NM_018774	54383	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic-like 2 (Drosophila)	protein-coding	3.143	4.001	1.739	3.874	4.013	2.129	3.412	2.256	2.466	3.277	1.541	0.903	3.820	5.122	nan	4.734	2.669	3.659	2.276	1.438	1.173	4.063	1.217	0.966	5.945
2761	chr11	98986398	98990922	+	0	NA	Intergenic	B2_Mm1a|SINE|B2	-5644	NM_178596	353155	Mm.453253	NM_178596	ENSMUSG00000047197	Gjd3	Gja11|Gjc1|cx30.2	gap junction protein, delta 3	protein-coding	6.616	nan	0.814	5.615	2.051	1.503	5.162	6.857	2.451	3.090	1.651	1.236	2.334	3.498	3.693	4.692	nan	3.713	3.456	nan	2.051	4.846	nan	nan	7.977
15750	chrX	71526248	71529003	+	0	NA	Intergenic	Intergenic	-28292	NM_001293624	15354	Mm.336087	NM_008253	ENSMUSG00000015217	Hmgb3	Hmg2a|Hmg4	high mobility group box 3	protein-coding	6.243	7.282	1.645	5.733	3.231	0.897	3.854	5.406	3.985	5.058	5.229	2.937	5.121	8.186	6.617	7.770	3.204	5.606	3.997	2.504	1.168	4.851	2.298	1.405	8.714
4871	chr14	77118149	77119161	+	0	NA	Intergenic	L1Md_F|LINE|L1	-38108	NM_001253759	239188	Mm.441158	NM_172813	ENSMUSG00000022012	Enox1	B230207J08|D230005D02Rik	ecto-NOX disulfide-thiol exchanger 1	protein-coding	1.897	0.743	0.853	2.018	1.517	1.791	2.098	1.226	2.636	2.690	1.077	0.594	2.660	4.098	3.013	3.496	2.126	3.299	0.725	0.948	0.726	0.490	1.043	0.825	2.024
1107	chr10	13761978	13766479	+	0	NA	intron (NM_001347362, intron 3 of 5)	MER2|DNA|TcMar-Tigger	104729	NM_025446	66253	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	1.855	9.060	4.933	1.539	1.073	0.629	0.529	0.527	nan	1.358	0.905	0.664	0.571	nan	1.133	1.189	1.160	1.449	0.912	1.064	0.645	0.721	0.507	0.600	nan
2996	chr11	116038888	116041090	+	0	NA	intron (NM_172569, intron 1 of 15)	B2_Mm1a|SINE|B2	9673	NM_172569	217331	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	3.310	nan	0.267	4.267	2.403	1.626	3.974	4.485	4.067	5.025	0.985	1.206	4.293	6.766	5.831	7.596	3.006	5.233	0.969	nan	0.303	0.766	0.355	0.518	6.111
13437	chr7	97360470	97362435	+	0	NA	Intergenic	L1ME4b|LINE|L1	-10165	NM_199035	381903	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	1.732	0.536	0.481	1.241	1.950	0.399	1.770	1.982	1.576	2.122	0.867	0.588	2.481	4.211	2.864	nan	1.185	2.799	nan	0.784	0.349	0.533	0.394	0.296	1.019
10124	chr4	58997304	59000358	+	0	NA	Intergenic	Intergenic	-4362	NM_001033165	72429	Mm.317801	NM_001033165	ENSMUSG00000070972	Dnajc25	2010109C08Rik|2010203O07Rik	DnaJ heat shock protein family (Hsp40) member C25	protein-coding	5.590	nan	0.808	3.734	2.124	2.408	6.651	6.264	4.940	4.152	2.844	3.352	5.735	5.253	6.414	7.074	5.362	6.203	nan	1.535	1.482	4.548	1.631	1.767	8.297
14409	chr8	86868937	86884198	+	0	NA	intron (NM_030563, intron 1 of 6)	URR1B|DNA|hAT-Charlie	8691	NM_030563	80750	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.331	0.525	0.248	0.288	0.279	0.179	0.356	0.412	nan	0.353	0.219	0.142	0.188	0.248	0.266	0.511	0.385	0.317	nan	5.643	4.041	8.493	3.074	2.321	0.530
12171	chr6	38652789	38655058	+	0	NA	Intergenic	RLTR14|LTR|ERV1	-9146	NM_001101507	665180	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	3.220	1.283	0.912	1.568	1.109	0.160	4.799	1.823	1.128	1.120	0.371	0.496	3.353	4.518	4.122	5.230	3.932	2.874	nan	0.709	0.216	nan	nan	0.211	5.080
3499	chr12	80996050	81000389	+	0	NA	Intergenic	Intergenic	-28589	NM_001146217	64075	Mm.273295	NM_022316	ENSMUSG00000021136	Smoc1	2600002F22Rik|AI848508|SRG	SPARC related modular calcium binding 1	protein-coding	6.185	1.261	0.612	5.347	2.954	1.384	2.712	2.203	4.806	5.485	3.698	3.092	5.066	5.662	4.879	6.006	5.945	6.478	1.454	1.633	0.791	1.226	0.893	0.879	5.548
3838	chr13	9137508	9140711	+	0	NA	intron (NM_001311117, intron 5 of 16)	Lx8|LINE|L1	45228	NM_172585	217980	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	5.548	1.026	1.106	3.703	6.294	4.785	4.674	6.423	7.091	5.524	5.095	3.995	6.765	6.575	6.871	7.034	4.683	5.885	0.692	0.829	0.631	0.935	0.877	0.852	4.861
9266	chr3	50260214	50261870	+	0	NA	Intergenic	Intergenic	182571	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.731	0.497	0.396	0.856	0.639	0.290	4.162	3.565	2.580	1.818	5.120	3.478	2.254	2.299	1.948	0.949	1.549	2.347	0.503	0.768	0.336	0.580	0.309	0.198	0.839
6614	chr17	36972741	36974830	+	0	NA	Intergenic	Intergenic	7452	NM_029747	76797	Mm.159787	NM_029747	ENSMUSG00000064308	2410137M14Rik	-	RIKEN cDNA 2410137M14 gene	protein-coding	8.026	9.021	5.060	7.067	4.663	2.927	8.202	7.635	5.538	8.198	4.723	4.935	5.562	7.504	7.271	11.655	8.453	6.980	5.057	3.033	2.351	3.671	3.091	2.810	11.026
5370	chr15	76866839	76868417	+	0	NA	intron (NM_001007568, intron 3 of 3)	ORR1E|LTR|ERVL-MaLR	3807	NM_001007568	71591	Mm.38195	NM_001007568	ENSMUSG00000022526	Zfp251	9130001M19Rik|AV339307	zinc finger protein 251	protein-coding	5.376	1.525	0.811	4.265	5.197	1.172	9.660	7.173	1.612	2.360	5.259	1.239	3.667	5.588	5.847	3.701	2.530	3.377	1.612	2.017	2.048	nan	1.486	1.581	7.005
4104	chr13	48978842	48982811	+	0	NA	Intergenic	B2_Mm1a|SINE|B2	12714	NR_015601	68128	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	1.964	0.864	0.683	nan	1.370	0.757	2.776	4.936	1.566	1.360	0.824	0.422	2.888	3.333	2.374	2.445	2.633	1.931	1.390	nan	0.913	0.887	1.076	0.903	nan
8052	chr2	27359613	27364969	+	0	NA	intron (NR_133905, intron 1 of 29)	intron (NR_133905, intron 1 of 29)	65317	NR_133905	22325	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	4.212	1.006	0.697	3.202	2.891	2.321	4.125	7.497	nan	3.243	4.013	2.817	5.462	4.235	3.622	6.453	4.866	4.389	1.147	0.960	1.421	1.631	0.616	0.800	5.253
7301	chr18	61864184	61867385	+	0	NA	intron (NM_198649, intron 2 of 22)	L1MB8|LINE|L1	46040	NM_198649	319713	Mm.329478	NM_198649	ENSMUSG00000032735	Ablim3	AW990719|D930036B08Rik	actin binding LIM protein family, member 3	protein-coding	6.844	nan	1.302	3.189	2.036	1.085	7.367	9.339	3.314	4.527	3.172	2.780	5.687	6.594	5.007	7.029	5.601	7.389	nan	3.433	2.495	4.073	3.798	3.002	8.223
5652	chr15	99695648	99699540	+	0	NA	intron (NM_001289791, intron 6 of 9)	intron (NM_001289791, intron 6 of 9)	-4693	NM_031842	83797	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	5.565	1.259	0.717	7.941	3.580	1.846	5.196	7.975	5.271	4.213	2.808	4.000	8.282	6.384	5.302	nan	9.050	6.051	2.347	2.198	1.655	1.456	3.199	2.631	6.110
10339	chr4	105987789	105991086	+	0	NA	Intergenic	Intergenic	-326776	NM_183225	329908	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	7.900	12.009	3.994	9.407	5.330	3.586	6.619	8.159	5.640	12.507	8.261	4.470	5.386	8.340	6.778	8.071	4.447	8.609	5.356	6.839	5.559	7.253	4.748	4.604	14.003
9515	chr3	94734052	94740773	+	0	NA	Intergenic	Intergenic	43839	NM_019414	20342	Mm.225405	NM_019414	ENSMUSG00000068877	Selenbp2	AP56|Lpsb2	selenium binding protein 2	protein-coding	3.966	0.704	0.378	4.348	5.245	4.538	4.722	4.770	3.778	5.031	nan	1.879	4.917	6.857	3.737	nan	2.983	4.587	0.794	0.931	0.897	1.194	0.835	0.763	4.331
3958	chr13	34490363	34493295	+	0	NA	Intergenic	URR1B|DNA|hAT-Charlie	-146647	NM_001033167	73102	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	3.179	nan	0.245	1.875	1.306	0.627	2.641	2.804	2.068	nan	6.383	2.833	1.891	2.857	2.690	2.955	1.391	2.379	1.464	0.685	0.961	1.932	1.241	0.825	nan
11331	chr5	72574398	72575725	+	0	NA	Intergenic	B2_Mm2|SINE|B2	6023	NM_174877	317755	Mm.11934	NM_174877	ENSMUSG00000063935	Zar1	-	zygote arrest 1	protein-coding	5.078	4.831	4.939	3.703	2.140	0.998	0.831	1.518	2.189	2.373	1.376	1.891	0.695	2.575	1.359	1.676	2.474	2.387	1.061	3.766	2.497	nan	1.322	0.554	1.482
14469	chr8	94321675	94332187	+	0	NA	Intergenic	Intergenic	-2277	NM_019415	20497	Mm.25804	NM_019415	ENSMUSG00000031766	Slc12a3	AI035291|NCC|NCCT|TSC	solute carrier family 12, member 3	protein-coding	6.449	0.793	0.386	8.708	6.563	3.932	4.365	1.457	8.122	14.058	7.444	3.221	5.360	6.859	5.196	12.782	9.215	11.171	1.308	1.570	1.536	1.059	3.029	3.080	21.691
12381	chr6	86346311	86348766	+	0	NA	Intergenic	Intergenic	-18145	NM_025591	66488	Mm.422972	NM_025591	ENSMUSG00000057497	Fam136a	2010309E21Rik|AW124904|Hyccin	family with sequence similarity 136, member A	protein-coding	7.067	6.706	1.732	6.259	2.683	1.090	9.246	7.647	3.441	6.188	4.830	2.226	7.291	9.437	7.592	10.475	5.764	6.250	nan	1.591	2.074	3.591	1.734	1.734	9.013
14812	chr8	129221585	129224888	+	0	NA	intron (NM_153780, intron 1 of 4)	intron (NM_153780, intron 1 of 4)	10810	NM_153780	72139	Mm.426514	NM_153780	ENSMUSG00000071302	2610044O15Rik8	2610044O15Rik	RIKEN cDNA 2610044O15 gene	protein-coding	11.207	3.135	1.672	6.759	8.214	5.622	8.597	11.047	7.403	10.452	6.883	3.925	12.341	13.625	9.310	11.645	11.388	10.847	nan	3.418	3.082	2.967	4.051	nan	10.099
8311	chr2	68248639	68251571	+	0	NA	intron (NM_016866, intron 16 of 17)	intron (NM_016866, intron 16 of 17)	145433	NM_020283	26877	Mm.226435	NM_020283	ENSMUSG00000034780	B3galt1	beta3Gal-T1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	protein-coding	2.295	0.599	0.294	0.929	0.655	0.340	3.247	3.764	1.876	1.703	5.486	0.826	2.318	2.419	2.798	2.189	2.061	2.759	0.642	0.553	0.371	0.626	0.490	0.269	2.181
11490	chr5	102498556	102500135	+	0	NA	intron (NM_146161, intron 1 of 8)	intron (NM_146161, intron 1 of 8)	17954	NM_029270	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	8.956	2.519	0.083	10.489	4.652	4.727	7.640	7.169	5.439	15.454	6.164	2.555	6.089	7.554	7.960	9.866	6.457	8.439	5.417	2.119	4.406	6.641	3.762	8.328	13.182
3831	chr13	6626919	6638033	+	0	NA	intron (NM_019703, intron 2 of 21)	intron (NM_019703, intron 2 of 21)	16295	NM_019703	56421	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	1.328	12.160	6.459	1.012	0.797	0.333	0.800	1.058	0.864	0.866	1.360	0.868	0.487	0.401	1.232	1.161	0.677	1.158	1.049	0.923	0.575	1.134	0.743	0.406	1.246
15707	chrX	34624146	34625882	+	0	NA	Intergenic	Intergenic	-442370	NM_001100609	100039467	Mm.427330	NM_001100609	ENSMUSG00000094759	Gm10487	ENSMUSG00000073253	predicted gene 10487	protein-coding	6.283	10.446	3.782	4.644	2.524	1.569	3.846	4.085	3.974	3.993	4.414	2.361	4.283	5.049	6.083	7.139	3.935	5.600	3.649	1.599	1.932	4.527	1.776	1.750	7.587
13049	chr7	28386190	28387433	+	0	NA	exon (NM_026042, exon 4 of 4)	exon (NM_026042, exon 4 of 4)	5879	NM_026042	67224	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	3.811	2.113	0.517	3.622	2.201	0.998	3.478	4.015	2.981	2.939	0.854	1.205	2.320	2.862	3.016	3.474	2.116	5.567	3.656	1.555	1.301	2.662	2.989	1.507	4.348
12142	chr6	32889813	32892993	+	0	NA	intron (NM_025336, intron 5 of 7)	intron (NM_025336, intron 5 of 7)	168749	NM_025336	66075	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding	3.600	0.578	0.680	1.494	2.140	1.307	4.375	3.678	2.448	3.021	0.649	0.472	3.922	3.727	5.076	6.861	5.692	4.243	nan	0.973	0.423	0.768	0.721	0.533	3.422
2192	chr11	53315355	53318732	+	0	NA	Intergenic	ID_B1|SINE|B4	-7646	NM_026479	67966	Mm.288072	NM_026479	ENSMUSG00000018239	Zcchc10	2410141K03Rik|AA675321|D11Ertd416e	zinc finger, CCHC domain containing 10	protein-coding	4.920	0.501	0.252	3.140	5.532	3.032	4.451	3.788	4.052	4.284	1.480	0.914	4.487	7.104	5.380	5.531	3.923	4.462	nan	0.755	0.632	0.381	0.851	0.683	nan
14435	chr8	89289351	89294959	+	0	NA	Intergenic	Intergenic	-247993	NM_021390	58198	Mm.214361	NM_021390	ENSMUSG00000031665	Sall1	Msal-3	sal-like 1 (Drosophila)	protein-coding	5.622	0.836	0.732	4.095	7.898	3.881	3.206	8.633	nan	5.667	4.883	1.942	6.161	9.037	7.981	8.620	6.344	6.827	nan	1.349	0.995	2.902	0.963	0.649	5.895
14129	chr8	34950523	34954791	+	0	NA	intron (NM_175091, intron 1 of 26)	ORR1A1-int|LTR|ERVL-MaLR	13033	NM_175091	21951	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	5.425	1.265	0.489	4.521	3.301	1.947	2.989	7.483	4.440	4.158	3.796	3.506	4.183	5.888	7.162	6.743	3.464	6.269	1.662	1.043	0.801	1.393	1.595	1.086	5.613
4655	chr14	49790875	49793615	+	0	NA	Intergenic	Intergenic	-8878	NM_026142	67419	Mm.318710	NM_026142	ENSMUSG00000036242	3632451O06Rik	AU067705	RIKEN cDNA 3632451O06 gene	protein-coding	6.192	8.562	2.150	8.384	4.515	4.693	6.247	9.124	4.480	11.568	3.769	3.174	5.409	6.599	8.234	9.205	4.080	7.132	4.919	1.173	3.444	5.050	3.166	5.040	14.398
7729	chr19	34776733	34788445	+	0	NA	Intergenic	Intergenic	-35478	NM_172838	240638	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	4.401	0.505	0.391	1.753	1.910	0.714	8.009	6.517	2.322	2.384	1.226	1.010	4.867	4.266	4.877	4.465	7.474	4.641	1.430	1.319	0.948	1.727	2.647	1.531	3.705
15468	chr9	106349447	106351771	+	0	NA	TTS (NM_027354)	TTS (NM_027354)	-18023	NM_153459	235584	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	6.298	4.669	1.443	6.246	3.722	2.511	6.171	6.529	3.685	6.069	3.920	3.032	5.077	8.127	5.154	7.344	5.728	5.984	3.504	4.072	2.908	4.595	5.219	3.338	9.289
1995	chr11	19748145	19750810	+	0	NA	Intergenic	Intergenic	-174965	NM_033523	114716	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	nan	nan	0.131	0.492	0.703	0.317	3.724	3.917	1.865	1.271	6.087	3.631	1.857	2.472	1.606	1.931	0.803	nan	0.478	0.321	0.200	0.471	0.356	0.288	0.767
333	chr1	77509935	77513572	+	0	NA	intron (NM_007936, intron 1 of 17)	intron (NM_007936, intron 1 of 17)	3335	NM_007936	13838	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	6.638	0.720	0.183	3.089	1.043	0.542	5.005	3.224	2.555	3.550	3.719	1.377	5.819	4.359	5.915	8.939	4.424	nan	nan	nan	0.930	2.564	nan	0.578	10.178
6686	chr17	47025675	47029583	+	0	NA	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-17097	NM_001177374	224826	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|ENSMUSG00000043296|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	6.719	10.500	3.867	9.713	3.414	2.049	8.584	7.088	4.843	8.436	5.535	4.504	5.801	9.010	9.303	9.856	6.983	7.145	5.042	3.038	3.963	5.128	4.504	4.890	12.521
6944	chr17	87375087	87377083	+	0	NA	intron (NM_028639, intron 19 of 19)	intron (NM_028639, intron 19 of 19)	51656	NM_029298	75467	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	1.720	7.224	5.612	1.295	1.585	1.313	1.030	0.630	nan	1.386	0.447	1.149	0.531	0.958	0.487	0.971	1.716	0.860	0.901	0.989	1.482	0.552	0.817	0.947	1.153
5972	chr16	30050232	30072156	+	0	NA	Intergenic	Intergenic	-4163	NM_008235	15205	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hairy and enhancer of split 1 (Drosophila)	protein-coding	9.143	2.823	1.074	6.370	4.425	2.970	9.416	10.465	5.610	8.887	6.171	4.434	nan	11.654	9.290	nan	6.924	9.689	3.448	1.562	1.329	3.603	nan	2.268	13.583
13547	chr7	112883908	112888162	+	0	NA	intron (NM_009346, intron 10 of 12)	intron (NM_009346, intron 10 of 12)	-67927	NM_175279	78748	Mm.349943	NM_175279	ENSMUSG00000098132	Rassf10	4632411J06Rik	Ras association (RalGDS/AF-6) domain family (N-terminal) member 10	protein-coding	8.840	8.909	4.186	10.922	5.893	3.546	6.603	8.106	5.608	7.111	5.255	4.432	7.331	8.848	8.352	7.884	7.261	8.552	nan	3.785	2.936	3.486	3.222	2.748	10.771
12920	chr7	13506031	13508350	+	0	NA	Intergenic	L1Md_T|LINE|L1	56349	NM_001301682	330470	Mm.291102	NM_001033418	ENSMUSG00000074378	Bsph1	Gm767	binder of sperm protein homolog 1	protein-coding	7.965	11.293	4.896	7.905	5.486	3.571	7.745	9.918	4.143	6.044	6.676	3.455	7.241	7.544	8.341	7.782	6.089	7.391	4.069	3.124	3.523	5.385	4.058	4.809	11.356
6525	chr17	31208964	31213312	+	0	NA	intron (NM_177823, intron 2 of 13)	intron (NM_177823, intron 2 of 13)	3072	NM_177823	328795	Mm.387930	NM_177823	ENSMUSG00000042345	Ubash3a	5830413C03Rik|C330001M22|Sts-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing, A	protein-coding	6.112	10.024	3.602	4.006	2.751	1.554	1.952	2.000	2.922	3.276	1.567	1.604	1.687	3.342	2.687	3.907	1.831	3.177	3.970	2.632	2.110	4.438	2.106	1.506	5.019
7778	chr19	42090744	42094700	+	0	NA	intron (NM_145501, intron 1 of 8)	intron (NM_145501, intron 1 of 8)	2287	NM_145501	84095	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	7.640	1.964	0.926	5.675	5.404	3.217	3.339	4.801	4.615	5.646	7.345	4.253	2.880	6.869	3.903	4.349	3.259	4.702	1.606	1.159	0.671	1.952	1.045	0.918	7.768
15674	chrX	11663409	11669354	+	0	NA	Intergenic	Intergenic	338559	NM_001114529	236663	Mm.473680	NM_001114529	ENSMUSG00000069038	H2al1j	EG236663|Gm4906	H2A histone family member L1J	protein-coding	4.281	5.053	0.957	6.192	2.584	1.800	4.028	5.339	2.991	7.523	3.165	2.013	4.145	5.869	5.596	6.377	2.939	5.449	3.592	1.367	2.085	4.861	2.600	3.229	11.179
11114	chr5	31554042	31558102	+	0	NA	Intergenic	RLTR20C2_MM|LTR|ERVK	15325	NR_102275	100740	Mm.23370	NR_102275		AI839979	-	expressed sequence AI839979	ncRNA	4.621	2.167	0.678	5.408	3.116	1.552	5.258	6.729	4.344	4.620	4.933	3.232	4.606	6.395	6.949	7.877	3.535	7.040	4.706	2.508	1.677	6.281	3.402	1.593	8.108
4427	chr13	113591104	113592546	+	0	NA	TTS (NM_130796)	TTS (NM_130796)	26739	NM_130796	170625	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	5.167	15.201	4.334	10.164	2.057	1.220	1.547	1.952	2.446	6.141	2.223	2.054	1.990	3.511	3.847	4.686	1.671	5.000	3.136	1.520	1.802	4.002	3.761	3.816	8.075
4451	chr14	8717962	8719197	+	0	NA	Intergenic	Intergenic	52189	NR_045968	74859	Mm.84041	NR_045968	ENSMUSG00000097898	4930455B14Rik	1700027C12Rik	RIKEN cDNA 4930455B14 gene	ncRNA	1.412	0.802	0.947	1.838	0.998	0.429	2.033	2.207	1.238	1.295	0.506	1.127	1.904	3.879	2.452	3.078	1.824	1.619	2.810	2.963	1.651	3.853	1.911	1.072	4.360
10650	chr4	133181030	133185402	+	0	NA	intron (NM_153423, intron 2 of 8)	intron (NM_153423, intron 2 of 8)	-12439	NR_105984	102466215		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	4.570	10.593	4.224	7.693	6.152	4.269	5.020	5.208	3.907	4.435	4.216	3.282	3.520	6.087	5.198	5.027	2.141	4.694	1.870	1.624	1.536	1.263	nan	1.036	7.987
7483	chr19	4578121	4579578	+	0	NA	intron (NM_001162946, intron 2 of 20)	intron (NM_001162946, intron 2 of 20)	-15470	NM_008797	18563	Mm.1845	NM_008797	ENSMUSG00000024892	Pcx	Pc|Pcb	pyruvate carboxylase	protein-coding	1.866	0.956	0.173	2.391	1.254	0.576	1.734	3.030	2.283	3.230	1.406	0.384	1.811	4.040	2.209	2.476	2.719	3.366	1.123	0.614	0.420	1.652	0.653	0.458	2.783
12074	chr6	17428572	17433536	+	0	NA	Intergenic	Intergenic	-32903	NM_008591	17295	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	6.658	nan	0.630	3.104	4.135	2.143	7.951	9.160	4.568	4.920	6.714	2.153	8.069	8.813	5.510	10.057	11.489	6.313	0.493	1.127	0.198	0.578	0.956	0.345	4.452
15528	chr9	110920703	110925275	+	0	NA	Intergenic	Intergenic	-6128	NM_001195437	235634	Mm.31788	NM_001195437	ENSMUSG00000096393	Gm590	-	predicted gene 590	protein-coding	1.219	0.820	0.638	1.025	0.597	0.479	0.505	1.277	nan	nan	6.544	2.794	0.436	0.523	0.686	nan	0.405	nan	0.571	0.361	0.476	0.309	0.449	0.271	nan
3901	chr13	24712557	24713855	+	0	NA	intron (NM_001286100, intron 16 of 22)	intron (NM_001286100, intron 16 of 22)	48731	NM_020567	57441	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	4.693	2.944	1.992	2.556	2.550	1.090	2.124	1.574	2.178	2.698	1.237	1.446	1.982	2.963	2.131	1.193	2.000	2.748	0.927	1.830	1.741	0.759	1.697	2.022	1.841
11282	chr5	65868823	65875713	+	0	NA	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	8699	NM_001081105	74734	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	3.235	2.646	2.288	2.436	2.953	2.645	2.932	6.498	3.585	2.509	3.552	3.646	2.922	3.950	3.735	3.228	3.202	3.424	1.132	1.215	1.240	nan	0.979	1.218	2.292
11035	chr5	17385221	17388098	+	0	NA	Intergenic	Intergenic	-89463	NM_027609	70935	Mm.332225	NM_027609	ENSMUSG00000058643	Speer4f1	4922502J04Rik|SPEER-4F|Speer4f	spermatogenesis associated glutamate (E)-rich protein 4F1	protein-coding	3.656	0.466	0.588	4.039	2.830	1.745	4.074	4.888	4.619	4.403	1.867	0.668	3.314	3.438	6.154	4.884	3.644	7.421	0.841	1.374	0.341	0.757	0.615	0.255	1.818
14905	chr9	21527024	21535625	+	0	NA	intron (NM_206536, intron 2 of 5)	B1_Mur1|SINE|Alu	5147	NM_001198794	382062	Mm.325205	NM_206536	ENSMUSG00000057191	AB124611	Gm1706	cDNA sequence AB124611	protein-coding	4.203	3.124	2.011	4.587	3.026	2.249	2.486	4.864	3.842	4.421	4.993	3.724	2.698	5.213	3.817	4.624	2.500	4.615	4.469	3.817	4.075	4.473	4.882	4.687	6.059
14098	chr8	26880893	26885954	+	0	NA	Intergenic	Intergenic	-59000	NR_045904	72316	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	2.926	nan	0.626	1.207	1.694	1.388	1.958	5.947	2.434	1.844	0.787	0.768	3.752	2.811	2.588	4.714	3.585	2.235	1.664	1.777	1.521	nan	0.781	0.578	0.839
9496	chr3	91814292	91818532	+	0	NA	Intergenic	L1_Mur1|LINE|L1	-198171	NM_207247	242100	Mm.297406	NM_207247	ENSMUSG00000042244	Pglyrp3	Gm420	peptidoglycan recognition protein 3	protein-coding	0.335	0.450	0.488	0.281	0.158	0.030	0.347	0.237	0.232	0.188	0.512	0.221	0.175	0.148	0.240	nan	0.260	0.268	nan	2.843	1.765	5.682	3.090	2.650	0.287
1582	chr10	89142380	89145416	+	0	NA	intron (NM_001277188, intron 2 of 27)	MER2|DNA|TcMar-Tigger	113892	NM_001277188	320091	Mm.236464	NM_178773	ENSMUSG00000035189	Ano4	A330096O15Rik|Gm65|Tmem16d	anoctamin 4	protein-coding	5.197	0.823	1.053	2.169	4.603	3.542	3.630	4.950	3.025	3.075	2.158	2.801	2.354	3.710	2.379	3.604	5.601	nan	3.274	2.252	1.607	nan	nan	3.211	2.992
14013	chr8	11777211	11779989	+	0	NA	intron (NM_001113517, intron 2 of 18)	intron (NM_001113517, intron 2 of 18)	20270	NM_001113518	54126	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	4.702	1.776	0.548	4.474	2.390	0.874	2.407	4.097	2.437	2.956	2.277	1.647	2.096	2.886	3.001	3.485	2.635	4.079	1.316	1.905	0.700	2.744	0.982	0.391	5.536
9284	chr3	51690893	51696304	+	0	NA	intron (NM_001004176, intron 3 of 4)	intron (NM_001004176, intron 3 of 4)	32419	NM_001310482	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	1.676	0.700	0.411	2.048	0.879	0.652	1.709	1.488	1.688	1.975	1.030	1.367	1.975	1.900	1.808	2.078	1.358	2.292	4.107	3.107	2.552	6.602	3.750	3.380	2.540
2842	chr11	102960276	102964139	+	0	NA	intron (NR_037963, intron 1 of 2)	ID_B1|SINE|B4	1947	NR_037963	69739	Mm.276539	NR_037963	ENSMUSG00000085338	2410004I01Rik	-	RIKEN cDNA 2410004I01 gene	ncRNA	5.461	nan	1.541	6.341	3.171	1.753	5.513	6.112	4.466	5.744	6.375	3.550	5.547	8.812	7.371	7.355	4.067	7.136	1.079	nan	0.727	1.710	nan	nan	8.455
13036	chr7	27557072	27559383	+	0	NA	intron (NM_175107, intron 2 of 9)	intron (NM_175107, intron 2 of 9)	-2249	NM_001122767	66367	Mm.29831	NM_175107	ENSMUSG00000049643	2310022A10Rik	-	RIKEN cDNA 2310022A10 gene	protein-coding	3.270	0.604	0.748	2.088	2.134	1.365	4.775	6.577	1.977	2.310	6.092	2.634	5.244	5.050	3.500	3.430	3.777	2.722	1.161	1.037	0.891	0.356	1.684	0.727	2.979
2900	chr11	106331305	106334704	+	0	NA	intron (NM_133199, intron 13 of 23)	intron (NM_133199, intron 13 of 23)	16386	NM_133199	110880	Mm.432528	NM_133199	ENSMUSG00000001027	Scn4a	Nav1.4|SkM1|mH2	sodium channel, voltage-gated, type IV, alpha	protein-coding	4.615	1.019	0.762	nan	2.991	2.326	5.567	4.953	2.815	3.119	7.095	3.662	3.998	5.204	3.159	5.126	5.721	3.829	1.465	1.761	1.303	nan	1.792	1.079	3.635
7981	chr2	15067071	15070133	+	0	NA	intron (NM_029466, intron 2 of 5)	intron (NM_029466, intron 2 of 5)	13240	NM_029466	75869	Mm.174068	NM_029466	ENSMUSG00000017418	Arl5b	4930587A11Rik|AW146430|Arl8	ADP-ribosylation factor-like 5B	protein-coding	6.543	0.353	0.341	1.868	2.347	1.566	8.308	11.112	3.304	3.952	0.522	2.255	9.199	6.136	6.050	7.533	6.846	6.037	0.450	0.441	0.360	0.204	0.287	0.342	3.178
15088	chr9	53919189	53922363	+	0	NA	intron (NM_177769, intron 9 of 10)	intron (NM_177769, intron 9 of 10)	54525	NM_177769	270162	Mm.259791	NM_177769	ENSMUSG00000041986	Elmod1	4831417L10|AI428506|AI834991	ELMO/CED-12 domain containing 1	protein-coding	2.675	0.390	0.333	4.063	1.684	0.800	0.305	nan	3.563	6.483	0.658	0.533	1.906	4.447	2.678	3.428	2.280	5.255	0.780	0.457	0.308	0.653	0.430	0.313	5.138
11182	chr5	36736158	36741710	+	0	NA	Intergenic	Intergenic	9745	NM_133724	117197	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	4.514	1.375	0.249	2.714	1.088	0.666	5.777	3.721	2.287	5.081	2.286	1.350	5.508	5.398	nan	5.981	3.506	nan	3.011	1.117	1.190	2.964	2.384	1.886	8.349
2283	chr11	60680357	60682145	+	0	NA	Intergenic	Intergenic	-18439	NM_001159405	16897	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	lethal giant larvae homolog 1 (Drosophila)	protein-coding	2.481	1.059	0.382	1.988	1.469	0.359	2.382	1.505	2.448	3.083	0.831	0.605	4.302	3.970	2.826	5.699	2.335	3.714	nan	0.564	0.769	1.664	0.465	0.632	5.100
2603	chr11	87521376	87524650	+	0	NA	intron (NM_001199293, intron 18 of 30)	RSINE1|SINE|B4	-55376	NM_001284398	18952	Mm.2214	NM_011129	ENSMUSG00000020486	Sept4	ARTS|Bh5|OTTMUSG00000001265|Pnutl2	septin 4	protein-coding	5.591	1.311	0.730	nan	3.291	1.862	7.047	6.754	4.079	4.309	5.416	2.595	7.405	7.714	6.923	8.962	6.543	6.159	0.845	1.176	0.786	nan	0.849	0.696	7.280
12191	chr6	39673455	39675520	+	0	NA	intron (NM_139294, intron 4 of 21)	B3|SINE|B2	50976	NM_139294	109880	Mm.245513	NM_139294	ENSMUSG00000002413	Braf	9930012E13Rik|AA120551|AA387315|AA473386|B-raf|Braf-2|Braf2|C230098H17|C87398|D6Ertd631e	Braf transforming gene	protein-coding	8.480	8.344	2.875	9.085	6.965	5.548	7.850	7.347	4.739	10.619	5.591	2.966	6.023	9.390	7.769	9.911	7.442	8.420	6.831	5.822	4.838	5.546	7.301	6.536	11.492
9644	chr3	104666502	104669275	+	0	NA	Intergenic	B1_Mur1|SINE|Alu	29224	NM_009196	20501	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	11.742	18.075	7.037	11.700	6.954	4.234	10.819	9.153	6.739	9.328	9.188	4.903	9.222	11.925	10.202	11.151	8.160	10.385	6.451	4.267	4.427	7.268	3.959	4.090	16.190
4955	chr14	119073522	119075258	+	0	NA	intron (NM_001081252, intron 10 of 38)	intron (NM_001081252, intron 10 of 38)	25044	NM_001081252	66435	Mm.213406	NM_025561	ENSMUSG00000042104	Uggt2	1810064L21Rik|3110001A05Rik|3110027P15Rik|A230065J02Rik|AW047562|Ugcgl2	UDP-glucose glycoprotein glucosyltransferase 2	protein-coding	2.790	4.654	1.724	1.583	1.145	0.735	1.391	5.140	2.968	1.854	6.339	6.541	2.249	2.656	2.730	3.541	0.762	2.574	0.954	1.180	0.299	2.054	1.200	0.415	4.503
2695	chr11	96265888	96270107	+	0	NA	Intergenic	Intergenic	2833	NR_029721	387191		NR_029721	ENSMUSG00000065546	Mir196a-1	Mirn196|Mirn196a-1|miR-196|mir-196a-1	microRNA 196a-1	ncRNA	1.699	nan	0.652	1.848	0.671	0.322	0.858	0.518	0.813	0.960	0.654	0.428	0.578	0.788	0.652	0.919	nan	1.072	7.770	nan	1.258	6.353	6.116	3.299	1.105
11563	chr5	111785145	111788068	+	0	NA	Intergenic	(TGGA)n|Simple_repeat|Simple_repeat	-24878	NR_045833	269683	Mm.136946	NM_207252	ENSMUSG00000085271	E130006D01Rik	Gm16018|Gm681|OTTMUSG00000029083	RIKEN cDNA E130006D01 gene	ncRNA	1.484	0.953	0.432	0.887	0.958	0.126	nan	0.923	0.591	0.886	0.257	0.271	0.700	1.082	1.459	1.514	0.745	1.515	4.459	1.554	0.857	5.448	1.601	1.111	1.410
15555	chr9	116222063	116225233	+	0	NA	Intergenic	L4_A_Mam|LINE|RTE-X	-48285	NM_009371	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	4.847	1.025	0.595	2.551	1.809	1.332	3.048	3.543	2.817	2.128	4.551	2.308	3.329	3.449	4.126	4.272	2.683	4.038	1.362	1.368	1.318	1.735	nan	0.764	6.573
1238	chr10	41295776	41301353	+	0	NA	intron (NM_133999, intron 1 of 22)	RMER12C|LTR|ERVK	4677	NM_133999	103199	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	2.051	1.283	0.652	1.015	0.800	0.263	1.815	2.141	1.255	1.556	0.953	1.576	2.034	1.689	1.731	2.053	1.001	1.690	2.781	1.482	0.875	5.606	1.662	1.301	1.977
11846	chr5	137859422	137861578	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-2451	NM_133209	170741	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	2.465	0.346	0.520	0.786	1.805	1.039	9.218	4.418	2.964	5.596	0.496	0.777	4.328	4.076	2.751	3.582	3.134	2.573	0.747	0.538	0.377	0.400	nan	1.185	2.507
10661	chr4	133648607	133656988	+	0	NA	Intergenic	Intergenic	-19368	NM_001017968	503610	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	3.364	17.098	7.231	3.405	1.687	1.264	1.159	2.338	nan	2.174	2.405	0.812	1.337	1.882	2.499	2.423	1.615	nan	1.038	1.759	1.824	0.860	nan	0.748	2.686
1559	chr10	85793003	85794528	+	0	NA	Intergenic	L1Md_F3|LINE|L1	-78066	NM_133993	103136	Mm.18834	NM_133993	ENSMUSG00000001785	Pwp1	2310058A11Rik|2610205J09Rik|AI098170|AL022879|AV083409|AW550690	PWP1 homolog, endonuclein	protein-coding	4.874	0.942	0.574	3.995	3.890	2.480	3.815	3.168	2.866	3.177	1.483	1.369	2.901	4.494	4.150	4.611	3.978	5.030	1.133	0.978	0.710	nan	nan	0.990	4.957
1793	chr10	120312980	120314244	+	0	NA	Intergenic	Lx2|LINE|L1	-75911	NR_040626	320626	Mm.446091	NR_040626	ENSMUSG00000090191	9230105E05Rik	-	RIKEN cDNA 9230105E05 gene	ncRNA	3.745	1.604	1.336	2.778	2.384	0.808	2.065	2.474	2.734	4.459	1.053	0.736	3.511	3.958	5.105	6.393	3.550	4.287	0.325	0.368		0.985	0.967	0.345	3.667
7	chr1	6717899	6727740	+	0	NA	intron (NM_001244693, intron 2 of 22)	intron (NM_001244693, intron 2 of 22)	-7232	NR_045189	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.435	0.410	0.419	0.367	0.143	0.096	0.185	0.314	0.284	0.260	0.151	0.224	0.206	0.207	0.261	0.573	0.505	0.341	8.397	3.548	1.677	5.419	5.244	3.615	0.226
1701	chr10	107598220	107600941	+	0	NA	intron (NM_001081432, intron 26 of 44)	AT_rich|Low_complexity|Low_complexity	-104851	NM_008657	17878	Mm.11	NM_008657	ENSMUSG00000035923	Myf6	MRF4|bHLHc4|herculin	myogenic factor 6	protein-coding	15.454	18.785	5.841	15.949	8.362	6.457	11.672	11.336	nan	18.691	10.277	5.476	10.050	12.652	12.459	12.861	9.740	13.659	7.571	4.786	4.798	8.951	5.885	6.365	22.899
7157	chr18	36560730	36578771	+	0	NA	intron (NM_175375, intron 1 of 33)	ID_B1|SINE|B4	9147	NM_175375	108857	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	8.397	1.002	0.648	3.732	5.440	2.946	10.187	9.344	5.667	5.452	5.139	4.007	10.690	nan	7.488	nan	6.503	7.647	1.209	1.067	0.782	1.484	0.877	0.533	8.764
5027	chr15	7668248	7670085	+	0	NA	Intergenic	Intergenic	-140882	NM_010275	14573	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	5.658	0.411	0.291	1.998	2.589	1.010	4.159	3.093	3.232	3.410	1.209	0.575	6.713	6.221	4.059	3.867	4.900	4.614	0.409	0.642	0.462	0.300	0.456	0.265	3.588
14745	chr8	125571055	125577461	+	0	NA	Intergenic	Intergenic	-10380	NR_015535	75930	Mm.195663	NR_015535	ENSMUSG00000110629	4930567H12Rik	4930579P07Rik	RIKEN cDNA 4930567H12 gene	ncRNA	3.545	nan	0.544	nan	1.841	1.761	4.109	7.499	3.330	2.671	4.029	2.868	5.075	3.685	nan	6.380	3.277	3.585	nan	0.745	0.911	nan	0.876	nan	nan
15339	chr9	78058727	78062837	+	0	NA	intron (NM_008103, intron 3 of 5)	intron (NM_008103, intron 3 of 5)	8824	NM_008103	14531	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1 (Drosophila)	protein-coding	5.404	0.679	0.547	3.787	3.880	3.080	6.851	8.054	5.099	4.114	8.574	4.356	7.335	8.285	6.895	7.365	4.789	7.267	0.678	nan	1.132	0.594	1.317	1.242	7.809
13945	chr7	151735016	151740584	+	0	NA	Intergenic	Intergenic	6422965	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	nan	nan	1.082	nan	4.223	2.431	4.579	8.313	nan	5.007	2.644	1.938	3.802	6.527	4.652	4.843	3.471	4.227	2.296	1.560	1.533	2.274	nan	2.585	nan
6491	chr17	29152303	29157333	+	0	NA	Intergenic	Intergenic	19762	NM_001002786	442827	Mm.440341	NM_001002786	ENSMUSG00000064147	Rab44	9830134C10Rik	RAB44, member RAS oncogene family	protein-coding	2.947	2.860	2.644	3.027	4.891	4.707	4.657	7.014	3.134	2.993	3.380	3.061	4.724	6.505	2.932	2.975	4.104	2.619	1.158	1.054	1.521	0.866	1.297	1.563	2.322
1937	chr11	5847314	5850591	+	0	NA	Intergenic	Intergenic	-10936	NM_017401	54125	Mm.260194	NM_017401	ENSMUSG00000020474	Polm	AI462166|B230309I03Rik|Tdt-N	polymerase (DNA directed), mu	protein-coding	1.357	0.932	0.338	0.830	0.734	0.220	0.484	0.722	0.648	0.634	1.089	0.824	0.439	0.834	0.898	0.856	0.766	0.739	8.113	3.495	2.910	10.594	5.531	3.648	1.228
13409	chr7	91335367	91337937	+	0	NA	intron (NM_011807, intron 1 of 22)	intron (NM_011807, intron 1 of 22)	245866	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	4.434	1.629	0.658	2.881	2.579	1.741	2.257	5.316	4.821	3.070	7.162	4.062	4.083	2.869	2.614	3.106	2.485	5.332	0.893	1.032	0.610	nan	0.683	0.521	1.651
5542	chr15	85887189	85902778	+	0	NA	exon (NM_028063, exon 8 of 11)	exon (NM_028063, exon 8 of 11)	15656	NM_028063	72026	Mm.158211	NM_028063	ENSMUSG00000022386	Trmu	1110005N20Rik|1600025P05Rik|AI314320|Trmt1	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	protein-coding	4.612	12.436	4.923	nan	2.022	0.906	6.182	9.481	nan	4.359	2.887	1.772	5.610	4.441	nan	nan	nan	nan	nan	1.121	1.191	nan	0.841	0.747	5.189
4274	chr13	85427423	85431088	+	0	NA	Intergenic	Intergenic	-139769	NM_145452	218397	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	7.415	10.233	2.702	8.790	3.334	2.454	6.266	6.779	5.667	11.272	7.447	4.473	6.600	8.692	7.516	8.562	4.724	9.303	4.985	1.991	2.069	4.723	2.455	3.197	11.315
5556	chr15	88666676	88672752	+	0	NA	Intergenic	(GGAAA)n|Simple_repeat|Simple_repeat	64505	NM_001033274	223770	Mm.254438	NM_001033274	ENSMUSG00000022387	Brd1	1110059H06Rik|AI316859|mKIAA4191	bromodomain containing 1	protein-coding	nan	2.070	0.566	nan	1.999	1.183	nan	nan	nan	3.130	0.988	0.956	1.966	5.049	nan	nan	nan	nan	nan	2.721	2.030	nan	2.127	1.915	nan
5154	chr15	39467241	39469076	+	0	NA	intron (NM_001256382, intron 10 of 26)	intron (NM_001256382, intron 10 of 26)	-191353	NM_001256384	116838	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	1.319	0.575	0.166	1.379	1.271	0.842	0.488	2.842	2.468	4.057	0.275	0.217	1.922	5.184	1.106	0.852	1.035	2.042	0.628	0.144	0.202	nan	0.440	0.206	nan
13735	chr7	133243597	133244934	+	0	NA	Intergenic	B4A|SINE|B4	116014	NR_046279	74970	Mm.491044	NR_046279	ENSMUSG00000109816	4930483O08Rik	-	RIKEN cDNA 4930483O08 gene	ncRNA	1.423	0.974	0.046	1.448	1.357	0.445	1.724	0.590	nan	2.059	0.342	0.428	1.945	3.760	1.744	2.590	1.439	2.250	0.464	0.411	0.243	0.530	0.296	0.455	3.250
14293	chr8	72735712	72737276	+	0	NA	intron (NM_001113248, intron 5 of 6)	intron (NM_001113248, intron 5 of 6)	13224	NM_009188	20467	Mm.2137	NM_009188	ENSMUSG00000031622	Sin3b	2810430C10Rik	transcriptional regulator, SIN3B (yeast)	protein-coding	4.388	8.545	1.742	4.783	2.255	1.281	3.779	6.246	2.251	5.468	2.778	1.407	4.500	5.908	5.383	7.328	3.642	4.810	nan	1.535	1.438	6.036	1.657	2.255	7.753
182	chr1	53897941	53914572	+	0	NA	intron (NM_001001883, intron 13 of 28)	intron (NM_001001883, intron 13 of 28)	56832	NR_106149	102465783		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	9.668	3.521	2.081	4.681	3.979	2.080	5.926	5.813	5.974	6.441	3.575	2.843	8.362	6.871	6.753	9.650	6.208	6.987	1.323	1.873	1.237	1.832	0.885	0.663	4.908
9490	chr3	90307148	90314708	+	0	NA	Intergenic	PB1D9|SINE|Alu	-30726	NM_139304	229542	Mm.270999	NM_139304	ENSMUSG00000042390	Gatad2b	AL118180|C430014D17Rik|P66beta|mKIAA1150	GATA zinc finger domain containing 2B	protein-coding	3.762	4.529	2.604	3.732	3.239	2.275	4.624	3.826	3.933	4.221	3.088	4.510	5.025	5.492	4.118	3.903	4.201	3.921	nan	1.515	1.810	2.307	1.775	2.021	4.029
6681	chr17	46883637	46889671	+	0	NA	Intergenic	B1_Mm|SINE|Alu	-3967	NM_178385	72726	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	4.047	5.858	4.376	3.108	2.946	2.497	5.523	3.498	2.483	3.406	2.923	1.763	3.287	5.453	3.539	4.134	nan	2.684	1.930	2.045	2.717	1.816	1.998	1.850	5.056
13400	chr7	90780149	90781736	+	0	NA	Intergenic	Arthur1|DNA|hAT-Tip100	-304947	NM_026734	68472	Mm.289791	NM_026734	ENSMUSG00000030614	Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding	9.315	7.098	3.197	8.406	3.416	2.438	4.260	12.152	5.577	7.307	7.039	3.130	6.386	8.961	6.964	9.151	6.672	5.948	4.056	2.720	1.346	4.142	2.730	2.029	9.963
3809	chr13	3699095	3701716	+	0	NA	Intergenic	Intergenic	66373	NM_001267724	142688	Mm.253061	NM_178283	ENSMUSG00000033781	Asb13	2210015B19Rik|6430573K02Rik|Asb-13|C85285	ankyrin repeat and SOCS box-containing 13	protein-coding	4.722	0.652	0.633	1.924	2.963	1.449	3.381	5.792	3.299	2.473	4.091	1.869	5.500	5.500	5.105	4.678	2.858	4.686	0.728	0.974	0.421	0.481	0.359	0.326	2.597
10493	chr4	123247993	123251348	+	0	NA	3' UTR (NM_013905, exon 5 of 5)	3' UTR (NM_013905, exon 5 of 5)	16114	NM_013905	56198	Mm.103615	NM_013905	ENSMUSG00000032744	Heyl	Hey3|Hrt3|bHLHb33|hesr3	hairy/enhancer-of-split related with YRPW motif-like	protein-coding	7.393	8.307	2.761	6.074	4.731	1.676	3.670	3.449	4.085	4.275	4.427	2.317	2.831	5.683	nan	4.882	3.362	5.720	1.506	2.625	1.230	1.163	0.806	0.523	6.687
6380	chr17	23926480	23930490	+	0	NA	Intergenic	Intergenic	11027	NM_001077633	620253	Mm.390964	NM_001077633	ENSMUSG00000057417	Dcpp3	Dcpp-3|EG620253|SPT-3	demilune cell and parotid protein 3	protein-coding	5.722	2.430	1.126	2.618	2.911	1.447	9.156	3.022	2.331	3.037	1.283	1.248	5.074	8.042	3.399	nan	3.873	3.051	5.914	5.127	3.269	4.155	4.868	4.322	5.846
15119	chr9	57407884	57416127	+	0	NA	TTS (NM_176831)	TTS (NM_176831)	20935	NR_040729	73772	Mm.444684	NR_040729		4930430J02Rik	-	RIKEN cDNA 4930430J02 gene	ncRNA	6.096	5.024	2.346	4.177	2.251	1.693	3.451	6.756	4.389	4.063	3.447	2.961	4.307	6.253	5.295	5.832	3.319	5.893	2.986	1.772	1.414	2.588	2.281	2.165	7.166
10056	chr4	46635570	46638123	+	0	NA	intron (NM_198664, intron 3 of 12)	intron (NM_198664, intron 3 of 12)	13353	NM_198664	381605	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	3.731	nan	0.386	1.634	3.369	2.244	2.336	4.427	2.911	3.420	2.414	1.561	2.872	4.819	3.950	4.833	1.729	4.557	1.191	0.662	1.051	nan	0.308	0.283	6.751
6371	chr17	22098671	22100678	+	0	NA	Intergenic	Intergenic	66303	NM_177596	210853	Mm.441622	NM_177596	ENSMUSG00000063383	Zfp947	6720451E15|EG210853|Gm4769	zinc finger protein 947	protein-coding	5.343	4.572	2.053	6.684	2.996	1.567	4.744	3.554	4.421	4.467	3.397	3.546	3.967	4.534	5.427	5.751	4.266	6.692	4.292	1.427	1.949	2.996	1.995	1.942	6.439
10768	chr4	138018827	138021254	+	0	NA	intron (NM_172703, intron 2 of 34)	MIR3|SINE|MIR	26584	NM_172703	230861	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	3.808	1.651	1.312	3.140	2.269	0.917	7.574	6.291	nan	2.750	1.000	1.657	5.309	5.209	3.699	5.153	3.396	2.306	4.951	1.921	2.291	5.698	3.368	3.018	3.411
10043	chr4	45539897	45545902	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-12071	NM_001033306	230126	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	8.166	nan	1.482	9.264	4.407	2.825	7.847	9.525	6.003	12.900	5.069	3.606	7.131	10.053	9.926	10.903	4.278	10.335	5.264	2.530	1.977	nan	2.569	3.119	14.505
11841	chr5	137591495	137592722	+	0	NA	Intergenic	Intergenic	8600	NM_001254762	68929	Mm.41355	NM_030037	ENSMUSG00000037221	Mospd3	1190005J19Rik|5133401H10Rik|Gtig2|R124	motile sperm domain containing 3	protein-coding	12.433	20.279	7.925	11.881	8.462	6.677	9.437	10.370	7.074	9.421	7.683	3.622	6.673	9.905	7.702	10.510	7.076	9.109	6.410	4.357	6.201	6.754	7.975	7.173	13.754
13480	chr7	106470513	106473374	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-30870	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	1.661	0.722	0.403	2.426	1.592	1.146	1.081	1.643	3.257	3.692	0.405	0.709	2.073	4.000	3.646	3.518	3.139	3.745	nan	0.552	0.520	0.990	0.506	0.688	7.136
11263	chr5	64688317	64691647	+	0	NA	Intergenic	Intergenic	-79283	NR_045078	100042198	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	4.588	4.527	2.481	2.932	2.896	1.019	5.342	4.990	3.138	3.585	2.251	2.489	2.716	5.833	4.741	5.235	3.733	3.059	3.053	2.890	1.460	nan	5.206	3.313	3.372
8868	chr2	156114626	156116317	+	0	NA	Intergenic	IAPEz-int|LTR|ERVK	-3506	NM_170588	266692	Mm.27660	NM_170588	ENSMUSG00000074643	Cpne1	1810028N16Rik|mKIAA4108	copine I	protein-coding	4.213	0.934	0.230	3.528	1.849	1.468	4.001	2.161	nan	2.682	0.858	1.010	4.547	3.222	3.151	3.217	2.239	4.309	nan	0.723	0.845	0.668	0.815	0.232	3.515
815	chr1	164317719	164321103	+	0	NA	intron (NM_178071, intron 3 of 9)	L1M4|LINE|L1	11739	NM_178071	171567	Mm.219428	NM_138314	ENSMUSG00000026575	Nme7	D530024H21Rik|Nm23-M7|Nm23-r7	NME/NM23 family member 7	protein-coding	9.935	1.021	0.915	nan	4.351	3.314	8.553	6.241	nan	3.569	2.808	2.796	9.174	6.449	5.139	9.879	9.466	5.256	1.026	1.257	1.619	nan	nan	0.788	nan
3486	chr12	80603076	80609373	+	0	NA	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	37887	NM_007951	13877	Mm.246551	NM_007951	ENSMUSG00000021131	Erh	Mer|Prei1	enhancer of rudimentary homolog (Drosophila)	protein-coding	5.382	1.288	0.528	2.480	1.790	0.796	4.551	3.688	3.525	3.680	5.285	1.454	7.904	4.168	5.231	5.748	5.674	5.321	0.965	1.180	0.600	1.903	1.005	0.565	4.079
14578	chr8	109443279	109444413	+	0	NA	Intergenic	Lx7|LINE|L1	-50181	NM_019938	56523	Mm.42166	NM_019938	ENSMUSG00000031727	Pmfbp1	1700016D22Rik|F77|Stap	polyamine modulated factor 1 binding protein 1	protein-coding	3.244	0.954	0.685	1.213	1.255	0.361	1.839	1.402	1.037	1.298	0.581	0.787	1.575	2.980	1.976	1.169	0.803	1.326	0.506	1.054	0.665	nan	0.669	0.110	1.944
14960	chr9	34958522	34967523	+	0	NA	intron (NM_001190913, intron 4 of 13)	MER3|DNA|hAT-Charlie	-153706	NR_029475	78934	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	4.453	0.988	0.814	3.154	2.827	1.564	3.318	4.123	4.391	4.128	6.027	1.443	4.105	6.546	3.519	3.672	nan	4.430	nan	0.945	1.034	0.838	1.023	0.875	4.894
167	chr1	52112167	52115108	+	0	NA	Intergenic	Intergenic	-5801	NM_009283	20846	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	2.776	1.944	0.860	1.956	0.839	0.527	1.151	0.734	2.380	2.198	5.196	1.074	2.795	1.569	1.454	2.860	1.960	2.589	nan	0.431	0.553	0.710	0.583	0.445	1.710
11605	chr5	115918003	115921582	+	0	NA	intron (NM_007708, intron 9 of 46)	intron (NM_007708, intron 9 of 46)	74136	NM_007708	12704	Mm.8321	NM_007708	ENSMUSG00000029516	Cit	C030025P15Rik|CRIK|CRIK-SK|Cit-k	citron	protein-coding	3.722	0.863	1.027	2.213	3.638	3.571	7.933	5.435	3.273	3.488	1.042	1.921	3.723	4.868	4.385	4.977	5.235	3.904	nan	nan	1.938	0.744	nan	1.861	3.516
9631	chr3	103806170	103807172	+	0	NA	intron (NR_040412, intron 4 of 4)	B3|SINE|B2	2716	NM_133865	140917	Mm.374850	NM_133865	ENSMUSG00000027845	Dclre1b	AI452214|Apollo|SNMIB|mSNM1B	DNA cross-link repair 1B	protein-coding	2.479	1.652	0.677	1.132	2.440	0.850	2.640	1.168	2.144	1.842	0.593	0.818	2.984	4.173	2.796	4.537	4.537	2.424	0.708	0.298	0.143	0.760	0.490	0.321	3.411
11271	chr5	65209414	65211103	+	0	NA	intron (NM_153391, intron 4 of 36)	Lx5b|LINE|L1	10562	NM_153391	213081	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	3.746	2.522	1.922	4.396	3.925	3.692	3.891	6.496	5.478	3.764	3.908	4.646	5.123	6.378	5.454	4.734	3.483	4.664	3.952	1.436	1.233	nan	2.411	2.392	3.583
8126	chr2	32106287	32109957	+	0	NA	intron (NM_145521, intron 1 of 1)	intron (NM_145521, intron 1 of 1)	12471	NM_145521	227721	Mm.257236	NM_145521	ENSMUSG00000051373	Plpp7	D830019K17Rik|NET39|Ppapdc3	phospholipid phosphatase 7 (inactive)	protein-coding	1.878	0.996	0.173	2.255	0.492	0.247	5.120	5.638	nan	0.604	0.899	0.496	6.061	4.176	3.877	4.209	3.382	2.242	0.679	0.812	0.898	2.492	0.452	0.221	5.317
11238	chr5	53625741	53628335	+	0	NA	intron (NM_001277116, intron 3 of 12)	intron (NM_001277116, intron 3 of 12)	36552	NM_001080927	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	3.182	0.570	0.508	1.541	1.405	0.824	4.599	2.673	2.118	2.417	2.666	1.343	3.368	4.246	4.068	nan	3.846	2.186	4.678	5.180	4.059	4.294	6.145	4.232	2.100
9118	chr2	181021475	181023859	+	0	NA	3' UTR (NM_015730, exon 6 of 6)	3' UTR (NM_015730, exon 6 of 6)	16510	NM_015730	11438	Mm.252369	NM_015730	ENSMUSG00000027577	Chrna4	Acra-4|Acra4|EBN1|ENFL1	cholinergic receptor, nicotinic, alpha polypeptide 4	protein-coding	10.806	14.960	6.343	9.973	8.118	5.520	9.184	11.741	7.085	12.419	8.712	5.417	9.600	11.678	9.704	12.253	11.424	9.981	7.869	5.052	4.821	6.512	6.786	6.595	13.623
6442	chr17	27073989	27079560	+	0	NA	intron (NM_080553, intron 2 of 57)	IMPB_01|Satellite|Satellite	-14471	NR_106142	102465779		NR_106142	ENSMUSG00000098826	Mir7677	Gm27400|mmu-mir-7677	microRNA 7677	ncRNA	4.381	6.012	2.670	4.263	2.926	1.863	6.549	3.888	2.808	4.171	2.800	1.767	3.021	5.411	5.412	nan	4.147	4.182	3.745	3.351	2.339	3.283	5.144	3.943	8.169
5743	chr16	4159900	4161632	+	0	NA	intron (NM_001025432, intron 2 of 30)	intron (NM_001025432, intron 2 of 30)	52638	NM_001025432	12914	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	5.865	0.736	0.577	2.529	4.704	3.541	nan	6.204	3.058	2.553	1.432	1.050	4.004	4.044	2.864	4.173	3.287	3.877	3.984	4.660	4.496	5.126	3.165	2.820	2.835
3564	chr12	86247714	86249511	+	0	NA	intron (NM_001324488, intron 2 of 8)	intron (NM_001324488, intron 2 of 8)	6754	NM_001324488	70373	Mm.252967	NM_027405	ENSMUSG00000021254	Gpatch2l	1700020O03Rik|4732487G21Rik|A630090I05Rik|Kiaa1152	G patch domain containing 2 like	protein-coding	3.716	1.462	0.865	3.139	1.362	0.520	3.024	0.961	1.088	2.007	1.006	0.487	3.280	5.470	3.145	2.589	3.039	1.899	0.766	1.120	0.640	1.123	0.290	0.322	6.969
11341	chr5	73222591	73224822	+	0	NA	intron (NM_028194, intron 1 of 62)	intron (NM_028194, intron 1 of 62)	32912	NM_028194	72313	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	2.441	12.676	6.628	1.583	1.315	0.989	1.124	2.181	1.709	1.471	0.515	0.977	0.479	1.610	1.636	nan	1.106	1.694	0.714	1.024	1.033	0.584	0.459	0.410	1.992
5933	chr16	24448136	24450972	+	0	NA	intron (NM_001145952, intron 1 of 11)	intron (NM_001145952, intron 1 of 11)	1463	NM_001145952	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	9.182	3.319	1.935	3.927	6.504	2.737	5.602	9.397	5.180	4.883	2.055	2.070	6.622	7.229	6.910	8.704	4.150	9.511	0.961	1.166	0.799	1.149	nan	0.794	12.272
4971	chr14	121433507	121436656	+	0	NA	Intergenic	Intergenic	-55851	NM_145465	223255	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	7.109	2.594	0.846	9.481	4.972	2.438	7.134	10.943	4.936	13.444	3.365	3.209	6.904	10.675	9.682	9.981	4.359	10.051	6.872	2.904	2.596	8.703	5.999	6.172	15.264
13842	chr7	141884866	141887456	+	0	NA	intron (NM_001347562, intron 6 of 6)	intron (NM_001347562, intron 6 of 6)	16245	NM_023764	54473	Mm.103551	NM_023764	ENSMUSG00000025139	Tollip	4930403G24Rik|4931428G15Rik	toll interacting protein	protein-coding	4.333	nan	0.403	3.657	3.810	2.659	2.709	2.239	3.686	4.311	0.969	1.008	5.087	5.722	3.474	3.632	3.404	4.525	0.694	0.635	0.315	0.386	0.256	0.187	5.682
12867	chr6	146918720	146922141	+	0	NA	intron (NM_026221, intron 1 of 26)	L1Md_T|LINE|L1	31936	NM_026221	67533	Mm.103382	NM_026221	ENSMUSG00000016487	Ppfibp1	4632409B19Rik|AW214454|AW261454	PTPRF interacting protein, binding protein 1 (liprin beta 1)	protein-coding	2.558	0.557	0.384	1.179	1.482	1.050	3.681	3.846	3.133	nan	3.083	1.207	5.056	4.852	2.487	4.779	4.115	2.298	0.968	nan	0.788	nan	0.851	0.724	nan
11329	chr5	68380747	68383250	+	0	NA	Intergenic	Intergenic	350163	NM_001018019	433899	Mm.332422	NM_001018019	ENSMUSG00000068082	Grxcr1	Tg(Eno2-Gabrb3)0370Brll|pi|tde	glutaredoxin, cysteine rich 1	protein-coding	5.263	0.478	0.306	3.858	4.367	2.522	6.513	2.345	5.611	5.758	1.353	3.459	7.184	5.658	5.974	5.924	5.101	6.789	3.890	3.291	3.215	nan	3.875	3.051	2.698
9314	chr3	53263326	53269101	+	0	NA	Intergenic	Lx8|LINE|L1	197045	NM_172501	212114	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	7.195	4.504	1.904	nan	4.556	2.787	7.096	5.233	4.443	5.850	3.062	2.251	7.998	7.797	nan	6.842	6.692	6.770	2.307	1.676	1.383	2.448	1.545	1.527	9.515
8119	chr2	31983874	31988240	+	0	NA	intron (NM_172268, intron 7 of 35)	intron (NM_172268, intron 7 of 35)	11607	NM_172268	227720	Mm.289686	NM_172268	ENSMUSG00000001855	Nup214	BC039282|CAN|D2H9S46E	nucleoporin 214	protein-coding	2.408	1.110	0.929	1.720	2.250	1.776	8.888	6.248	nan	1.689	0.936	0.885	3.106	5.096	4.958	4.758	4.508	2.536	1.325	1.680	1.599	1.381	1.741	1.502	5.274
1174	chr10	23506146	23509027	+	0	NA	Intergenic	MLT1E|LTR|ERVL-MaLR	-157643	NM_010167	14051	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	10.928	8.668	2.968	8.086	6.406	2.675	7.969	5.858	7.465	6.542	7.558	4.845	7.394	10.152	10.139	10.279	7.593	9.521	3.387	2.391	1.783	4.095	2.606	1.810	11.695
15544	chr9	115513170	115522149	+	0	NA	Intergenic	Intergenic	135840	NR_130329	100316675		NR_130329	ENSMUSG00000080409	Mir467h	Mirn467h|mmu-mir-467h	microRNA 467h	ncRNA	0.714	2.174	1.066	0.715	0.192	0.083	0.282	0.545	0.534	0.382	0.359	0.256	0.190	0.311	0.463	0.607	0.266	0.904	2.703	2.090	1.544	6.179	nan	1.615	0.809
13596	chr7	118002551	118007048	+	0	NA	Intergenic	Intergenic	111348	NM_170669	267019	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	3.771	0.814	0.377	5.381	1.504	0.881	3.174	4.693	3.024	2.499	1.372	0.734	3.755	2.740	4.456	4.109	2.993	4.815	0.839	0.796	0.245	0.867	0.356	0.272	3.258
13332	chr7	82763192	82764539	+	0	NA	intron (NM_175317, intron 18 of 19)	L1M2|LINE|L1	-8221	NR_046004	77800	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	3.186	1.521	0.920	3.982	5.174	4.876	1.707	2.240	3.377	3.258	3.037	2.134	2.939	4.006	2.219	2.955	2.729	4.372	2.778	2.966	2.520	2.914	2.022	2.349	nan
10965	chr4	152070253	152073572	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-14951	NR_104381	269608	Mm.332102	NM_001004156	ENSMUSG00000039713	Plekhg5	BC023181|Syx	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	protein-coding	0.159	nan	0.182	0.121	0.056	0.111	0.120	0.100	0.078	0.118	0.086	0.153	0.049	0.071	0.190	0.394	0.107	0.226	4.748	0.852	0.480	5.101	1.741	1.183	0.403
510	chr1	120492974	120495317	+	0	NA	exon (NM_010766, exon 3 of 17)	exon (NM_010766, exon 3 of 17)	10939	NM_010766	17167	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	3.267	1.119	0.608	2.772	2.397	1.993	5.077	1.091	3.427	3.151	0.816	1.371	5.590	5.232	4.041	7.541	3.659	5.038	2.764	1.371	1.004	2.574	2.478	2.525	2.305
8338	chr2	70980198	70981279	+	0	NA	intron (NM_145524, intron 4 of 9)	intron (NM_145524, intron 4 of 9)	37636	NM_001110512	228019	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	1.443	0.531	0.306	1.354	0.414	0.225	2.180	2.024	2.138	3.335	0.461	0.633	3.723	3.610	3.270	3.696	4.511	2.531	0.503	0.524	0.227	0.497		0.256	3.773
393	chr1	88383251	88390109	+	0	NA	intron (NM_134252, intron 26 of 26)	intron (NM_134252, intron 26 of 26)	-20330	NM_029269	75396	Mm.173058	NM_029269	ENSMUSG00000026295	Spp2	0610038O04Rik|pp-24|spp24	secreted phosphoprotein 2	protein-coding	9.229	10.958	4.846	8.178	3.526	2.369	7.662	7.073	6.415	6.741	5.857	3.695	8.961	7.476	8.713	12.881	8.591	9.186	5.037	3.779	3.396	5.784	4.175	4.145	11.433
10754	chr4	137495555	137500886	+	0	NA	intron (NM_008305, intron 1 of 96)	intron (NM_008305, intron 1 of 96)	29417	NM_008305	15530	Mm.273662	NM_008305	ENSMUSG00000028763	Hspg2	AI852380|Pcn|Plc|per	perlecan (heparan sulfate proteoglycan 2)	protein-coding	3.184	0.957	0.421	5.900	5.754	3.291	4.692	3.541	nan	5.359	1.349	0.545	4.768	9.424	6.542	6.202	2.601	5.068	2.701	1.296	1.000	4.318	nan	1.435	8.625
6482	chr17	28563707	28572455	+	0	NA	Intergenic	Lx8|LINE|L1	-7315	NM_001317065	109791	Mm.21160	NM_025469	ENSMUSG00000024225	Clps	2200003J09Rik	colipase, pancreatic	protein-coding	5.676	2.443	1.410	4.351	3.267	2.118	2.043	1.917	3.701	3.991	2.871	1.610	2.431	4.450	2.264	nan	2.967	3.502	1.090	0.990	0.941	1.083	0.810	0.528	2.991
13385	chr7	87939820	87948793	+	0	NA	intron (NM_001143834, intron 4 of 10)	intron (NM_001143834, intron 4 of 10)	-333779	NM_009982	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	10.672	4.266	1.756	9.250	9.447	6.670	10.751	11.952	8.891	12.254	4.579	3.083	15.521	13.882	11.783	nan	nan	nan	5.069	3.241	2.472	nan	5.176	4.468	nan
9051	chr2	168561996	168569140	+	0	NA	intron (NR_111898, intron 2 of 5)	intron (NR_111898, intron 2 of 5)	24797	NM_001291178	18019	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	5.026	2.937	1.361	2.848	2.988	2.679	5.666	6.171	3.461	5.746	3.211	2.862	5.435	nan	4.328	8.023	6.741	nan	nan	1.141	1.634	2.383	2.861	3.983	9.552
8271	chr2	59555113	59560621	+	0	NA	Intergenic	Intergenic	-54175	NM_198294	66860	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	2.300	1.245	0.588	2.217	1.588	0.915	1.832	2.961	2.110	2.392	1.209	0.648	2.834	3.584	1.862	2.850	2.894	2.771	3.000	2.165	1.148	5.211	3.134	1.688	1.880
5892	chr16	21718464	21720586	+	0	NA	Intergenic	Intergenic	-24860	NM_001001881	72190	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	4.137	2.230	1.688	1.970	3.149	1.704	7.541	6.337	3.221	3.783	1.691	0.852	6.916	6.925	6.678	7.762	5.674	4.936	5.291	2.838	1.203	4.229	6.257	3.297	4.577
8586	chr2	119885048	119887943	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	-10733	NM_001164274	29808	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	4.606	0.833	0.344	3.752	1.154	0.681	3.196	5.493	1.849	3.639	1.781	0.385	4.179	5.297	4.130	6.638	5.055	4.358	1.205	0.616	0.472	1.457	0.327	0.295	9.966
658	chr1	136310281	136318702	+	0	NA	intron (NM_001347110, intron 2 of 16)	L1M5|LINE|L1	31613	NM_001081360	67886	Mm.144143	NM_001081360	ENSMUSG00000041570	Camsap2	1600013L13Rik|4930541M15Rik|Camsap1l1|mKIAA1078	calmodulin regulated spectrin-associated protein family, member 2	protein-coding	9.571	3.357	1.418	5.403	4.268	2.995	5.326	7.474	4.553	5.577	4.540	2.647	6.006	6.143	5.770	9.482	6.020	6.183	2.407	1.890	1.371	2.481	1.673	1.780	7.064
3262	chr12	32183790	32186377	+	0	NA	intron (NM_001146200, intron 10 of 10)	intron (NM_001146200, intron 10 of 10)	23255	NM_001146201	30955	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphoinositide-3-kinase, catalytic, gamma polypeptide	protein-coding	9.269	11.710	3.916	9.168	3.759	1.402	6.354	5.243	4.172	7.191	4.424	2.728	7.430	7.172	7.255	9.391	6.585	7.710	4.418	3.059	1.645	5.058	3.583	2.508	14.176
10463	chr4	120261182	120263007	+	0	NA	Intergenic	Intergenic	25167	NM_194060	329934	Mm.277090	NM_194060	ENSMUSG00000052135	Foxo6	-	forkhead box O6	protein-coding	0.684	3.206	1.194	1.331	0.782	0.069	0.655	1.098	1.614	1.892	0.931	0.329	1.188	2.282	1.002	1.361	1.054	2.620	4.044	2.757	1.614	4.728	3.190	2.151	7.189
274	chr1	69730389	69735577	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-47023	NM_011770	22779	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	5.522	2.956	1.911	3.284	2.142	1.187	3.122	5.952	2.668	3.483	10.560	6.572	5.526	nan	4.327	nan	5.802	nan	0.974	2.209	0.899	0.996	1.005	0.831	1.755
13218	chr7	56133692	56136968	+	0	NA	exon (NM_010418, exon 29 of 93)	exon (NM_010418, exon 29 of 93)	85175	NM_010418	15204	Mm.20929	NM_010418	ENSMUSG00000030451	Herc2	D15F32S1h|D7H15F32S1|D7H15F37S1|jdf2|mKIAA0393|rjs	HECT and RLD domain containing E3 ubiquitin protein ligase 2	protein-coding	nan	5.224	1.667	1.131	0.265	0.285	0.620	1.148	0.536	0.928	1.583	1.019	0.969	0.823	1.398	nan	0.625	1.669	5.451	1.394	0.774	3.937	3.523	2.783	2.324
4786	chr14	66467799	66471628	+	0	NA	Intergenic	IAPLTR1_Mm|LTR|ERVK	125417	NM_019675	56471	Mm.35474	NM_019675	ENSMUSG00000022044	Stmn4	Lagl|R75359|RB3	stathmin-like 4	protein-coding	2.761	0.921	0.416	1.248	1.315	0.827	4.674	4.874	3.470	2.214	2.818	2.962	3.394	3.547	4.670	3.959	2.403	3.653	0.674	nan	0.423	0.943	0.242	0.272	4.360
13803	chr7	137183999	137188763	+	0	NA	Intergenic	Intergenic	-48302	NR_045885	100038555	Mm.444788	NR_045885	ENSMUSG00000109722	Gm10578	ENSMUSG00000073800	predicted gene 10578	ncRNA	4.288	nan	0.637	4.393	3.183	1.766	3.854	7.370	4.727	5.146	1.055	0.983	7.119	5.557	6.866	8.005	6.618	6.825	2.011	1.640	1.314	1.538	1.729	1.216	6.059
877	chr1	173176108	173182488	+	0	NA	Intergenic	L1Md_A|LINE|L1	5206	NM_146763	258758	Mm.223190	NM_146763	ENSMUSG00000058981	Olfr1406	MOR267-5	olfactory receptor 1406	protein-coding	7.957	3.391	1.533	4.905	4.181	1.840	4.797	4.556	3.554	4.925	4.066	2.992	3.656	5.127	4.190	6.814	3.809	4.671	2.768	2.984	1.525	2.387	2.327	1.753	6.387
7612	chr19	18786819	18789546	+	0	NA	intron (NM_153417, intron 7 of 38)	intron (NM_153417, intron 7 of 38)	38199	NM_153417	225997	Mm.215171	NM_153417	ENSMUSG00000024727	Trpm6	CHAK2|TRPM6/CHAK2	transient receptor potential cation channel, subfamily M, member 6	protein-coding	5.893	6.179	2.014	5.918	3.259	2.795	5.501	5.351	4.124	6.498	3.611	3.288	4.245	4.538	5.847	7.695	7.169	7.011	1.868	1.471	2.337	3.559	3.829	3.759	10.740
1508	chr10	80409319	80411930	+	0	NA	exon (NM_011548, exon 18 of 19)	exon (NM_011548, exon 18 of 19)	-3803	NM_025650	66594	Mm.379119	NM_025650	ENSMUSG00000020163	Uqcr11	0710008D09Rik|AL022707|Uqcr	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding	4.755	1.811	0.694	4.047	2.407	1.768	5.278	6.461	3.120	2.770	3.853	2.444	4.587	6.355	4.890	5.363	2.857	5.328	nan	1.566	1.429	4.125	1.671	1.750	6.750
10551	chr4	128645302	128648991	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-7556	NM_001195130	54383	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic-like 2 (Drosophila)	protein-coding	4.196	2.179	0.329	4.889	2.888	1.156	3.123	1.414	3.568	5.762	1.656	1.155	6.164	8.298	6.028	8.219	3.142	4.947	2.866	0.911	0.615	4.877	2.023	0.997	6.136
1771	chr10	117099917	117102172	+	0	NA	intron (NM_177798, intron 2 of 9)	B3|SINE|B2	-37230	NM_007636	12461	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	7.507	2.736	2.036	4.739	9.205	5.546	8.405	10.281	4.288	5.336	4.627	4.756	9.004	10.869	7.948	8.533	8.149	7.002	2.384	1.573	1.290	3.071	3.230	3.342	9.036
1128	chr10	19225039	19226759	+	0	NA	Intergenic	Intergenic	58661	NR_038022	100504265	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	4.499	5.074	2.673	2.894	2.727	1.321	1.079	1.447	nan	2.963	4.963	1.246	1.810	2.235	1.790	1.928	2.279	2.208	0.927	1.782	1.265	0.438	0.955	1.132	1.368
13035	chr7	26683690	26686480	+	0	NA	intron (NM_001081148, intron 1 of 8)	intron (NM_001081148, intron 1 of 8)	1345	NM_001081148	243881	Mm.294678	NM_001081148	ENSMUSG00000040650	Cyp2b23	EG243881	cytochrome P450, family 2, subfamily b, polypeptide 23	protein-coding	2.331	0.359	0.454	5.625	4.306	3.113	1.292	1.725	3.156	3.437	2.727	2.499	0.979	1.705	1.206	1.645	1.465	2.406	0.505	0.857	0.548	0.423	0.627	0.857	1.129
9324	chr3	57143076	57150848	+	0	NA	Intergenic	L1Md_T|LINE|L1	154957	NM_008536	17112	Mm.856	NM_008536	ENSMUSG00000027800	Tm4sf1	L6|M3s1	transmembrane 4 superfamily member 1	protein-coding	5.595	0.358	0.501	nan	4.720	3.375	7.898	5.142	6.206	6.528	1.685	2.505	8.238	7.752	nan	5.271	6.394	6.501	3.314	2.922	2.835	3.319	3.899	3.840	3.942
7407	chr18	76275237	76278129	+	0	NA	intron (NM_001311070, intron 1 of 8)	intron (NM_001311070, intron 1 of 8)	14238	NM_001311070	17126	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	1.451	nan	0.378	1.313	1.450	0.840	1.679	5.375	1.984	3.002	1.493	1.658	2.080	5.901	4.302	4.683	1.970	1.831	0.713	nan	0.445	1.064	0.647	0.732	4.774
5297	chr15	73235958	73239231	+	0	NA	intron (NM_001130409, intron 24 of 29)	intron (NM_001130409, intron 24 of 29)	17288	NR_029561	387169		NR_029561	ENSMUSG00000065612	Mir151	Mirn151|mir-151|mmu-mir-151	microRNA 151	ncRNA	5.821	nan	0.678	3.209	2.792	2.154	7.129	5.343	3.146	4.059	nan	0.681	7.409	6.749	5.735	5.310	7.395	4.481	3.926	2.182	2.317	nan	3.776	3.463	5.242
8718	chr2	138092283	138095112	+	0	NA	Intergenic	Intergenic	-162887	NM_001025431	228662	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	2.679	0.415	0.223	2.645	1.498	1.000	1.707	3.545	1.966	1.706	2.568	1.725	1.741	1.634	1.870	2.293	2.188	2.990	3.231	2.747	1.573	4.601	3.607	2.631	2.032
15702	chrX	33970137	33972077	+	0	NA	Intergenic	L1Md_T|LINE|L1	190477	NM_001085552	668960		NM_001085552	ENSMUSG00000095716	Btbd35f10	Gm14351|OTTMUSG00000016411	BTB domain containing 35, family member 10	protein-coding	0.841	0.301	0.065	0.797	0.272		0.139	0.335	0.484	0.720	0.208	0.208	0.925	2.036	1.161	1.278	0.657	0.421	0.228	0.140	0.063	0.300	0.050	0.048	3.188
13145	chr7	50697789	50700807	+	0	NA	intron (NM_001037906, intron 14 of 19)	intron (NM_001037906, intron 14 of 19)	100108	NM_172901	243996	Mm.443270	NM_172901	ENSMUSG00000084234	4933405O20Rik	-	RIKEN cDNA 4933405O20 gene	protein-coding	13.032	8.625	3.540	9.323	6.956	3.090	10.716	14.767	6.790	9.145	6.302	4.324	10.557	12.959	9.767	11.110	10.787	9.733	3.464	5.698	2.477	3.655	4.401	2.752	13.665
8323	chr2	69217465	69219035	+	0	NA	intron (NM_001289856, intron 1 of 4)	intron (NM_001289856, intron 1 of 4)	-1699	NM_021331	14378	Mm.140768	NM_021331	ENSMUSG00000005232	G6pc2	G6pc-rs|IGRP	glucose-6-phosphatase, catalytic, 2	protein-coding	3.155	1.164	0.852	1.871	1.562	0.551	2.288	6.407	2.190	1.460	3.215	1.504	5.155	3.871	5.157	4.795	3.614	3.344	0.307	0.354	0.223	0.382	0.274	0.097	4.355
4737	chr14	61351111	61366084	+	0	NA	intron (NM_026598, intron 1 of 3)	AT_rich|Low_complexity|Low_complexity	1848	NM_026598	68177	Mm.22758	NM_026598	ENSMUSG00000021928	Ebpl	5730442K12Rik|EBRP	emopamil binding protein-like	protein-coding	6.530	nan	2.310	4.925	2.801	1.726	5.845	8.032	4.918	6.108	5.732	4.146	5.114	6.983	6.096	7.646	4.064	6.248	0.900	1.596	0.880	1.003	0.701	0.568	7.539
3515	chr12	81334863	81338645	+	0	NA	Intergenic	MTE2b|LTR|ERVL-MaLR	-3574	NM_080440	110893	Mm.443748	NM_080440	ENSMUSG00000079055	Slc8a3	AW742262|Ncx3	solute carrier family 8 (sodium/calcium exchanger), member 3	protein-coding	3.369	1.135	0.400	2.176	2.476	1.729	2.004	1.618	1.830	2.358	5.963	1.861	1.647	2.716	1.821	1.983	1.796	2.237	1.165	0.695	0.952	1.244	0.956	0.747	3.029
4074	chr13	46545188	46548460	+	0	NA	intron (NM_026056, intron 3 of 12)	intron (NM_026056, intron 3 of 12)	44921	NM_026056	67252	Mm.44529	NM_026056	ENSMUSG00000021373	Cap2	2810452G09Rik|AV045235	CAP, adenylate cyclase-associated protein, 2 (yeast)	protein-coding	3.413	0.656	0.557	nan	1.503	0.949	0.576	0.916	2.410	5.144	1.657	1.059	1.573	1.999	1.045	1.536	1.398	nan	8.541	nan	3.913	4.599	8.013	4.847	nan
8916	chr2	160178864	160180150	+	0	NA	Intergenic	ORR1G|LTR|ERVL-MaLR	147987	NM_001033411	329554	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	5.158	1.146	0.825	0.930	0.903	0.243	4.057	6.222	nan	nan	2.335	0.952	4.438	4.116	4.696	5.797	5.675	3.882	2.203	1.784	0.719	1.357	1.103	1.281	4.329
5586	chr15	96111770	96121940	+	0	NA	Intergenic	Intergenic	-37302	NR_126492	402773	Mm.210567	NM_001033483	ENSMUSG00000078925	D030018L15Rik	-	nuclear receptor coactivator 2 pseudogene	pseudo	9.473	11.878	4.100	10.191	5.297	3.887	10.238	12.580	6.477	14.917	6.569	4.306	11.754	10.181	9.590	9.408	8.446	9.916	7.167	2.995	3.680	6.234	4.867	5.800	12.769
1724	chr10	111074011	111075423	+	0	NA	Intergenic	RMER5|LTR|ERV1	-64651	NM_172554	320150	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|Hip14	zinc finger, DHHC domain containing 17	protein-coding	3.128	0.873	0.243	1.355	4.062	1.564	2.861	4.347	3.385	3.867	5.116	3.423	3.287	4.575	3.924	3.949	2.529	3.871	0.547	0.480	0.376	0.686	0.948	0.403	2.659
8849	chr2	154899396	154901226	+	0	NA	Intergenic	MYSERV16_I-int|LTR|ERVK	-7405	NM_026030	67204	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	3.544	8.783	2.781	6.332	2.006	0.467	4.835	7.376	nan	nan	2.947	1.814	6.197	6.013	7.839	9.779	5.227	5.185	4.888	1.505	0.920	5.614	1.742	1.586	8.589
7452	chr19	3375559	3378525	+	0	NA	intron (NM_013495, intron 14 of 18)	intron (NM_013495, intron 14 of 18)	-11815	NM_001039658	17771	Mm.209941	NM_010841	ENSMUSG00000024905	Mtl5	tesmin	metallothionein-like 5, testis-specific (tesmin)	protein-coding	5.483	1.349	0.522	4.713	2.669	1.534	4.174	5.937	nan	3.176	2.004	1.059	2.490	4.836	3.281	3.425	2.664	3.532	0.528	0.904	0.654	1.013	0.613	0.132	6.667
6835	chr17	71612760	71615117	+	0	NA	Intergenic	LTRIS_Mus|LTR|ERV1	-2277	NM_175639	72515	Mm.257762	NM_175639	ENSMUSG00000041057	Wdr43	2610318G08Rik|AU020887|AV024208|Wrd43|mKIAA0007	WD repeat domain 43	protein-coding	5.069	1.644	0.799	2.185	2.347	1.715	1.592	1.519	2.331	2.652	3.157	1.074	1.839	3.425	2.686	2.572	1.684	2.917	0.764	1.124	0.837	0.964	1.051	0.444	2.927
3965	chr13	36244313	36246130	+	0	NA	intron (NM_001039189, intron 2 of 5)	intron (NM_001039189, intron 2 of 5)	127578	NM_001039189	69955	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	3.253	1.248	0.909	2.693	2.452	1.078	2.999	3.064	3.220	4.655	2.347	1.315	4.480	4.306	2.677	4.721	2.280	5.112	0.781	1.151	0.784	1.550	0.489	0.266	4.897
4056	chr13	45033105	45036247	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-32580	NM_025772	94245	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	5.333	1.162	1.185	nan	2.315	0.915	2.269	2.639	3.187	3.330	7.078	3.570	2.865	3.445	2.797	3.511	1.818	3.511	1.042	nan	0.670	0.726	0.702	0.677	3.302
5127	chr15	37239373	37252561	+	0	NA	intron (NM_026496, intron 1 of 15)	intron (NM_026496, intron 1 of 15)	12931	NM_026496	252973	Mm.244612	NM_026496	ENSMUSG00000022286	Grhl2	0610015A08Rik|BOM|Tcfcp2l3|clft3	grainyhead-like 2 (Drosophila)	protein-coding	2.856	0.661	0.526	2.010	1.552	0.816	5.271	6.366	3.299	2.836	3.883	3.552	5.041	3.673	4.595	4.865	4.885	4.356	4.290	2.775	2.187	nan	3.353	2.704	nan
250	chr1	64347826	64350161	+	0	NA	Intergenic	PB1D11|SINE|Alu	-183811	NM_133828	12912	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	8.940	3.229	1.366	6.779	6.639	4.436	7.051	4.690	5.804	4.956	7.844	4.448	6.396	5.836	5.441	6.564	nan	6.656	2.164	1.906	2.454	2.601	1.653	2.291	5.478
2148	chr11	50022749	50027929	+	0	NA	promoter-TSS (NM_021540)	promoter-TSS (NM_021540)	8	NM_001290750	59044	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	9.075	6.002	2.044	10.596	11.988	10.088	6.218	nan	6.194	8.902	4.967	3.327	6.935	10.296	8.573	nan	5.629	nan	4.472	2.923	4.404	nan	nan	4.628	9.522
8699	chr2	133377625	133380388	+	0	NA	Intergenic	Intergenic	-173153	NM_007553	12156	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	1.921	1.353	0.143	4.467	0.955	0.574	1.870	5.670	2.232	4.833	1.058	1.083	5.504	3.498	7.567	6.818	4.848	7.047	2.827	0.671	1.369	2.607	2.088	3.330	12.740
6019	chr16	33560667	33563824	+	0	NA	intron (NM_001083902, intron 4 of 11)	intron (NM_001083902, intron 4 of 11)	43650	NM_001083902	171286	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	3.784	1.292	0.552	5.677	1.869	0.638	4.105	5.011	2.040	2.177	1.226	1.096	2.468	3.451	3.671	4.724	1.882	5.124	1.045	0.529	0.256	1.243	1.105	0.804	nan
11027	chr5	17325213	17331074	+	0	NA	Intergenic	Lx7|LINE|L1	-147979	NM_027609	70935	Mm.332225	NM_027609	ENSMUSG00000058643	Speer4f1	4922502J04Rik|SPEER-4F|Speer4f	spermatogenesis associated glutamate (E)-rich protein 4F1	protein-coding	4.569	0.433	0.467	3.849	5.143	4.033	5.332	4.256	5.130	5.746	2.194	1.108	6.035	5.295	5.582	4.441	4.573	5.355	0.863	1.012	0.970	0.491	0.481	0.454	2.165
2959	chr11	113193910	113196936	+	0	NA	intron (NR_015556, intron 1 of 2)	intron (NR_015556, intron 1 of 2)	6415	NR_015556	72386	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	4.046	nan	0.565	1.299	1.259	0.397	nan	nan	1.618	2.907	1.741	0.892	1.868	2.309	2.459	3.313	2.918	nan	4.707	nan	1.690	3.232	5.383	3.456	5.282
9923	chr4	8938297	8944626	+	0	NA	Intergenic	Intergenic	251055	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.984	1.148	0.630	1.238	0.745	0.414	0.361	nan	0.997	0.722	0.552	0.602	0.557	0.747	0.806	0.795	0.467	1.095	4.843	5.347	3.144	8.781	3.641	2.334	0.855
13272	chr7	73452233	73457607	+	0	NA	intron (NM_001081345, intron 30 of 38)	intron (NM_001081345, intron 30 of 38)	-79146	NR_040324	319783	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	5.963	2.318	0.960	5.517	2.544	1.143	6.663	8.582	5.696	6.208	3.534	3.519	9.032	7.250	6.858	7.454	3.901	6.692	2.540	1.855	1.300	3.394	1.410	1.048	9.430
130	chr1	39896115	39898179	+	0	NA	Intergenic	Intergenic	-3766	NM_001252202	26921	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0.468	2.161	1.372	0.437	0.606	0.254	0.469	0.434	0.356	0.502	0.358	0.203	0.231	0.418	0.299	nan	0.315	0.418	2.912	3.354	1.267	2.952	3.775	2.051	0.576
8893	chr2	157327188	157334010	+	0	NA	intron (NM_001329683, intron 4 of 4)	intron (NM_001329683, intron 4 of 4)	6827	NM_001329683	14601	Mm.389327	NM_010285	ENSMUSG00000027643	Ghrh	GRF|Ghrf	growth hormone releasing hormone	protein-coding	nan	0.457	0.387	0.432	0.921	0.427	0.686	1.585	nan	nan	0.619	0.456	nan	nan	0.393	0.614	0.672	nan	nan	3.005	2.583	1.685	8.011	5.801	nan
1373	chr10	66949972	66955035	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-32119	NR_138561	68488	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	3.463	1.234	0.567	0.630	1.932	1.081	1.775	4.586	1.374	1.802	2.876	1.203	1.696	2.446	2.300	1.513	2.974	1.448	0.540	0.498	0.266	0.414	0.325	0.264	2.481
53	chr1	21229829	21232835	+	0	NA	Intergenic	RSINE1|SINE|B4	-9253	NM_001288617	14859	Mm.394593	NM_010356	ENSMUSG00000025934	Gsta3	Gst2-3	glutathione S-transferase, alpha 3	protein-coding	11.462	0.904	0.579	4.556	1.426	0.402	6.093	10.317	2.463	3.491	5.572	2.123	8.087	6.861	5.073	7.867	7.613	5.404	0.856	1.241	0.579	1.168	0.846	0.764	3.309
11154	chr5	34162007	34164990	+	0	NA	intron (NM_146159, intron 4 of 4)	intron (NM_146159, intron 4 of 4)	5926	NM_146159	231123	Mm.319286	NM_146159	ENSMUSG00000079555	Haus3	D4S43h|D5H4S43|D5H4S43E	HAUS augmin-like complex, subunit 3	protein-coding	5.280	13.915	4.978	8.022	2.942	2.103	4.512	4.073	3.356	10.897	4.131	2.799	3.651	5.530	7.176	7.249	nan	6.545	6.340	2.515	4.867	7.402	4.727	8.715	10.654
2925	chr11	107438705	107440385	+	0	NA	intron (NM_145823, intron 1 of 9)	intron (NM_145823, intron 1 of 9)	31175	NM_145823	71795	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	4.648	1.066	0.747	3.289	3.080	1.422	3.071	2.336	2.639	3.137	1.999	0.785	3.499	3.950	1.960	3.125	5.276	2.470	1.043	1.285	1.182	nan	0.858	0.396	2.806
5591	chr15	96420373	96431669	+	0	NA	intron (NM_028148, intron 6 of 14)	B4A|SINE|B4	34822	NM_028148	72193	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	1.086	1.413	0.769	1.687	0.447	0.163	0.713	2.564	0.973	0.927	0.421	1.156	0.951	0.851	1.801	nan	1.352	0.816	6.697	4.136	2.795	7.848	6.434	4.684	1.001
5329	chr15	74783880	74794591	+	0	NA	Intergenic	Intergenic	-10376	NR_027837	78725	Mm.171357	NM_172433	ENSMUSG00000101026	D730001G18Rik	Ly6g6g	RIKEN cDNA D730001G18 gene	ncRNA	9.614	nan	4.641	nan	6.530	3.829	nan	10.101	6.281	7.702	11.724	7.370	6.853	nan	7.295	7.106	5.184	9.042	3.485	3.021	2.705	nan	2.623	2.234	9.901
4966	chr14	120751196	120753300	+	0	NA	Intergenic	Intergenic	-158946	NM_023579	70572	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5	importin 5	protein-coding	3.087	0.995	0.321	5.119	1.249	0.597	0.890	1.583	2.844	1.378	1.280	0.641	1.611	2.449	2.539	2.254	1.102	3.546	0.590	0.856	0.243	0.765	0.808	0.415	2.628
7284	chr18	60764387	60774670	+	0	NA	Intergenic	MTE2a-int|LTR|ERVL-MaLR	-5068	NM_020600	20044	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	6.724	nan	0.643	6.635	6.354	3.762	4.436	7.235	4.669	5.948	3.601	2.661	5.708	8.000	4.873	5.624	3.764	5.880	nan	1.177	0.954	nan	1.494	1.244	6.804
6724	chr17	50164064	50165793	+	0	NA	intron (NM_181397, intron 2 of 9)	RLTR25A|LTR|ERVK	25569	NM_181397	76438	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	4.320	8.502	5.221	2.339	1.899	0.936	1.107	0.839	1.876	2.457	0.936	0.690	0.972	1.621	1.618	1.778	nan	2.131	0.776	1.880	1.743	1.005	0.760	0.438	2.041
7581	chr19	11123745	11126320	+	0	NA	intron (NM_027058, intron 1 of 6)	L1_Mus4|LINE|L1	5846	NM_027058	69369	Mm.391200	NM_027058	ENSMUSG00000024729	1700017D01Rik	-	RIKEN cDNA 1700017D01 gene	protein-coding	6.367	10.446	5.925	6.438	4.282	2.177	4.744	4.921	nan	3.704	2.431	2.617	3.672	4.144	3.027	nan	2.777	2.938	1.011	2.378	1.000	0.883	1.949	1.061	3.410
5905	chr16	22517507	22518952	+	0	NA	TTS (NR_130988)	TTS (NR_130988)	6749	NR_130988	78082	Mm.243927	NR_130988	ENSMUSG00000089874	9230117E06Rik	-	RIKEN cDNA 9230117E06 gene	ncRNA	2.985	2.147	1.183	3.352	1.135	0.177	4.826	7.560	2.260	3.126	1.012	1.198	5.455	4.764	4.448	7.074	2.956	4.315	3.503	2.659	2.250	7.431	1.897	1.648	5.996
4517	chr14	21883197	21887535	+	0	NA	Intergenic	Lx8b|LINE|L1	-36456	NM_026965	69156	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	5.194	0.641	0.433	3.471	3.246	2.642	5.046	4.788	nan	4.212	1.083	0.839	4.856	6.530	4.322	4.378	4.170	5.035	0.637	0.957	0.794	nan	0.485	0.417	4.118
13428	chr7	96579219	96586226	+	0	NA	intron (NM_011858, intron 5 of 32)	intron (NM_011858, intron 5 of 32)	218827	NR_045874	791381	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	ENSMUSG00000053049|OTTMUSG00000021246	predicted gene 15413	ncRNA	2.163	0.620	0.355	1.259	0.971	0.570	2.676	6.398	1.121	1.345	0.743	1.574	3.281	2.072	2.642	nan	1.976	2.026	nan	0.687	0.267	0.514	0.749	0.760	1.395
12712	chr6	125533334	125546794	+	0	NA	Intergenic	(TTTC)n|Simple_repeat|Simple_repeat	-12884	NM_011708	22371	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	2.987	nan	0.373	2.368	1.353	0.807	3.084	5.190	2.256	2.081	1.319	1.842	2.808	2.700	4.612	4.826	2.998	4.289	10.382	5.314	3.082	12.474	9.022	5.666	3.951
13015	chr7	26032594	26037774	+	0	NA	Intergenic	L1_Mus4|LINE|L1	-26311	NM_007813	13089	Mm.482696	NM_007813	ENSMUSG00000040583	Cyp2b13	-	cytochrome P450, family 2, subfamily b, polypeptide 13	protein-coding	8.172	6.551	2.057	10.961	4.118	2.244	8.099	9.903	4.526	9.939	5.543	3.023	5.672	8.492	8.455	8.990	5.925	8.632	4.660	2.968	3.057	7.797	4.295	4.365	13.964
2392	chr11	70003137	70008383	+	0	NA	exon (NM_007888, exon 5 of 15)	exon (NM_007888, exon 5 of 15)	5134	NM_007888	13543	Mm.5114	NM_007888	ENSMUSG00000020888	Dvl2	-	dishevelled segment polarity protein 2	protein-coding	2.303	0.917	0.585	1.703	2.321	1.183	1.812	2.521	2.597	2.545	7.731	5.421	1.477	nan	1.698	1.852	1.334	2.372	1.132	1.001	0.749	0.821	nan	0.579	nan
8526	chr2	115583722	115586562	+	0	NA	intron (NM_001145898, intron 1 of 10)	Charlie1a|DNA|hAT-Charlie	3426	NM_001145898	399568	Mm.134929	NM_207264	ENSMUSG00000040282	BC052040	-	cDNA sequence BC052040	protein-coding	0.969	0.406	0.363	0.885	0.751	0.258	1.378	0.766	1.477	1.340	5.475	1.637	nan	1.016	1.088	nan	1.448	1.356	0.919	1.230	0.816	0.912	1.331	1.128	nan
12902	chr7	4412261	4419101	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-17937	NM_001163014	243816	Mm.248662	NM_001163014	ENSMUSG00000078810	Gp6	9830166G18Rik|Gm469|Gpvi	glycoprotein 6 (platelet)	protein-coding	7.175	1.346	0.741	5.608	5.812	3.130	8.182	11.309	5.129	6.363	5.036	2.857	9.655	10.219	8.563	9.073	7.841	9.155	2.156	1.205	0.821	0.920	1.790	1.333	10.209
3313	chr12	43049564	43051742	+	0	NA	Intergenic	Intergenic	1159415	NM_013760	27362	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	1.844	0.826	0.469	0.678	0.745	0.293	2.687	2.595	2.098	1.446	2.475	4.134	2.915	2.313	1.451	0.610	2.254	1.200	0.740	0.644	0.409	0.919	0.639	0.245	1.049
1824	chr10	122420753	122425732	+	0	NA	Intergenic	L1Md_T|LINE|L1	-25257	NM_016847	54140	Mm.4351	NM_016847	ENSMUSG00000020123	Avpr1a	AVPR|Avpr1|V1a|V1aR	arginine vasopressin receptor 1A	protein-coding	10.842	12.073	4.571	9.561	5.742	3.321	8.324	5.916	6.376	14.198	8.224	4.029	8.440	10.546	8.716	9.588	8.108	9.395	7.072	5.104	3.591	6.355	6.353	5.366	11.887
4135	chr13	52334677	52335901	+	0	NA	Intergenic	Intergenic	195547	NM_001024474	68203	Mm.29362	NM_001024474	ENSMUSG00000047842	Diras2	2900052J15Rik|AI414999	DIRAS family, GTP-binding RAS-like 2	protein-coding	1.925	0.650	0.916	nan	2.998	3.021	1.578	3.008	2.284	2.541	1.589	1.393	2.080	5.174	1.954	1.509	1.275	1.847	0.793	nan	1.149	0.331	0.524	0.583	nan
13654	chr7	121396886	121398868	+	0	NA	intron (NM_001081327, intron 1 of 1)	intron (NM_001081327, intron 1 of 1)	5581	NM_001081327	195646	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	6.733	8.342	3.969	8.226	6.002	5.247	6.177	9.239	5.122	10.454	5.471	4.343	6.954	7.218	7.585	7.704	5.376	7.467	4.166	3.473	2.929	4.469	3.755	5.117	10.402
12437	chr6	90296960	90299843	+	0	NA	Intergenic	HAL1|LINE|L1	-2869	NM_177738	243535	Mm.233854	NM_177738	ENSMUSG00000049694	BC048671	-	cDNA sequence BC048671	protein-coding	3.046	0.575	0.366	nan	1.155	0.427	7.622	6.890	1.308	1.850	5.757	1.521	3.835	6.461	5.069	5.390	5.313	2.747	nan	0.270	0.354	0.489	0.152	0.298	4.777
12726	chr6	127841703	127848705	+	0	NA	Intergenic	Intergenic	-42418	NM_026743	68498	Mm.174368	NM_026743	ENSMUSG00000030351	Tspan11	1110014F12Rik|AU067806	tetraspanin 11	protein-coding	2.921	nan	0.263	2.966	2.694	1.399	4.879	4.282	4.151	5.801	0.581	0.376	6.349	9.913	6.550	10.607	6.248	4.665	0.623	0.496	0.428	0.484	0.372	0.211	5.125
5633	chr15	99081614	99087435	+	0	NA	TTS (NM_001024702)	TTS (NM_001024702)	3204	NM_001024702	239659	Mm.309917	NM_001024702	ENSMUSG00000001076	C1ql4	C1qtnf11|CTRP11	complement component 1, q subcomponent-like 4	protein-coding	6.084	4.466	1.276	4.488	2.008	1.116	7.455	9.752	3.668	5.457	2.651	1.572	10.602	8.053	8.758	nan	6.246	5.620	3.527	1.455	1.508	3.471	1.693	1.682	8.061
10647	chr4	133036061	133038218	+	0	NA	intron (NM_146155, intron 2 of 6)	MER33|DNA|hAT-Charlie	25633	NM_146155	230793	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	4.261	2.122	0.837	5.076	3.019	1.927	2.367	4.323	nan	4.717	5.605	1.859	1.894	4.916	3.268	3.134	1.033	4.884	2.574	0.684	0.604	2.870	nan	1.255	3.047
15176	chr9	62938575	62942653	+	0	NA	intron (NM_019663, intron 2 of 13)	ORR1B1|LTR|ERVL-MaLR	40265	NM_019663	56469	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	9.286	4.518	3.968	5.824	5.276	3.392	5.821	5.824	4.846	6.985	2.508	2.233	5.828	8.024	4.230	6.599	5.814	6.870	4.862	4.979	3.278	3.083	7.036	6.496	9.752
13777	chr7	134919529	134921562	+	0	NA	intron (NM_001143802, intron 1 of 3)	intron (NM_001143802, intron 1 of 3)	17885	NM_001143802	627214	Mm.323610	NM_001143802	ENSMUSG00000073805	Fam196a	B830028B13Rik	family with sequence similarity 196, member A	protein-coding	10.272	15.293	4.265	11.985	6.226	5.453	9.242	11.645	5.853	15.470	8.694	4.916	10.601	12.355	10.474	11.039	8.048	9.927	5.716	3.552	4.901	7.245	4.432	6.404	16.836
3916	chr13	30075080	30077819	+	0	NA	Intergenic	Intergenic	-60041	NM_153546	218121	Mm.89682	NM_153546	ENSMUSG00000038732	Mboat1	9130215M02Rik|BC023845|LPEAT1|Moact1|Oact1	membrane bound O-acyltransferase domain containing 1	protein-coding	8.648	14.685	5.805	6.125	3.390	2.731	9.918	7.093	3.133	8.900	5.927	4.823	4.999	7.792	8.678	10.563	6.449	6.941	5.770	3.453	4.224	5.908	3.426	5.470	16.858
10015	chr4	43393710	43400972	+	0	NA	intron (NM_001037709, intron 1 of 11)	RLTR17B_Mm|LTR|ERVK	-9161	NM_199057	100213	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	3.052	nan	0.759	8.234	7.084	5.968	5.065	4.981	1.880	3.020	1.041	0.581	3.960	6.468	5.035	4.296	1.249	nan	2.195	1.759	1.658	nan	1.661	1.324	2.275
9986	chr4	40184470	40188033	+	0	NA	intron (NM_007386, intron 14 of 20)	intron (NM_007386, intron 14 of 20)	42986	NM_007386	11428	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	5.417	5.300	2.654	5.448	5.682	3.715	3.948	3.255	3.195	3.859	3.506	1.731	2.895	4.564	3.898	nan	2.997	nan	2.939	2.599	2.688	1.434	2.736	2.367	6.131
276	chr1	71769244	71771894	+	0	NA	Intergenic	Intergenic	117234	NR_040308	100042814	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	ENSMUSG00000073652|Gm15456|OTTMUSG00000022136	apolipoprotein L 7d	ncRNA	8.556	0.530	0.339	2.248	1.241	0.683	5.563	6.566	3.440	3.617	0.777	4.360	8.962	4.485	4.827	5.111	7.550	3.841	1.952	1.214	0.967	2.216	1.456	1.453	4.088
12141	chr6	32819716	32823431	+	0	NA	intron (NM_025336, intron 6 of 7)	intron (NM_025336, intron 6 of 7)	-233381	NM_175750	243743	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	1.210	0.677	0.480	1.011	0.740	0.697	1.074	2.064	2.178	2.060	0.575	0.651	1.397	1.278	3.137	6.207	2.420	2.535	nan	0.357	0.264	0.632	0.398	0.422	1.095
6514	chr17	30163114	30165554	+	0	NA	intron (NM_148926, intron 3 of 4)	intron (NM_148926, intron 3 of 4)	92201	NR_105839	102465223		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA	5.439	1.458	0.974	4.049	4.642	2.896	4.924	4.136	4.356	3.569	1.658	1.894	3.278	4.925	4.664	5.186	4.629	5.264	3.006	2.166	1.625	2.629	1.780	1.450	3.635
6006	chr16	32650662	32652240	+	0	NA	intron (NM_016788, intron 1 of 15)	ORR1F|LTR|ERVL-MaLR	6808	NM_016788	51789	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	4.725	5.671	3.230	3.255	3.473	2.260	2.473	5.065	3.286	4.084	2.869	1.735	3.045	5.268	3.649	4.649	2.858	5.442	1.552	0.944	1.861	1.742	nan	1.172	4.219
6376	chr17	23809948	23818094	+	0	NA	intron (NM_175229, intron 9 of 13)	RSINE1|SINE|B4	10834	NM_175229	75956	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	6.796	3.657	1.378	5.093	4.902	2.309	9.373	7.733	3.458	5.297	5.848	3.903	5.711	9.979	8.916	nan	6.731	5.834	3.780	2.221	2.089	4.793	3.223	2.528	10.945
2465	chr11	75262780	75277514	+	0	NA	Intergenic	Intergenic	76154	NM_177708	237847	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	nan	9.375	3.946	8.465	7.115	4.633	nan	7.071	6.496	9.958	5.089	2.817	6.717	12.172	nan	nan	6.335	8.490	2.340	2.002	nan	2.456	2.256	2.196	10.140
11894	chr5	140893438	140902833	+	0	NA	intron (NM_175362, intron 9 of 24)	intron (NM_175362, intron 9 of 24)	-67704	NM_010302	14673	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	5.658	4.502	1.897	6.122	4.162	2.706	6.078	4.238	5.380	7.075	3.229	1.947	6.328	7.785	7.809	7.471	5.217	6.928	2.628	1.359	1.188	2.677	nan	1.473	7.563
3523	chr12	81563696	81565101	+	0	NA	intron (NM_020330, intron 1 of 1)	intron (NM_020330, intron 1 of 1)	4076	NM_020330	56622	Mm.117130	NM_020330	ENSMUSG00000008438	Adam21	Adam31	a disintegrin and metallopeptidase domain 21	protein-coding	7.134	6.600	5.262	5.155	2.688	2.940	6.601	4.833	2.915	5.443	2.524	2.358	4.217	7.610	5.808	6.934	7.686	4.483	6.151	5.077	3.940	5.219	7.281	5.395	10.605
14849	chr9	7979370	7980340	+	0	NA	intron (NM_009534, intron 2 of 7)	L1M3|LINE|L1	24741	NM_001171147	22601	Mm.221992	NM_009534	ENSMUSG00000053110	Yap1	AI325207|Yap|Yap65|Yki|Yorkie	yes-associated protein 1	protein-coding	2.520	nan	0.402	2.461	2.015	0.581	0.734	1.045	2.646	3.638	1.103	0.702	1.981	3.754	2.531	3.207	nan	4.484	nan	1.601	0.561	0.804	0.450	0.260	2.890
10638	chr4	132657766	132670654	+	0	NA	intron (NM_210071, intron 3 of 16)	B1_Mus2|SINE|Alu	25164	NM_010166	14050	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	5.067	1.064	0.873	4.569	6.023	4.747	5.257	5.628	3.292	4.436	4.000	2.142	3.543	6.477	nan	4.053	3.247	4.131	3.060	3.576	3.579	3.452	3.690	3.857	4.444
3868	chr13	20318301	20320827	+	0	NA	intron (NM_080288, intron 13 of 21)	intron (NM_080288, intron 13 of 21)	-153426	NM_198093	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	1.533	7.556	5.925	2.053	0.373	0.099	0.372	0.711	1.409	1.014	0.718	0.415	0.636	nan	1.033	1.274	nan	2.035	1.108	1.114	0.798	0.674	0.692	1.018	nan
13826	chr7	139878457	139882178	+	0	NA	Intergenic	Intergenic	-14379	NM_177261	76484	Mm.44442	NM_177261	ENSMUSG00000066129	Kndc1	2410012C07Rik|B830014K08Rik|VKIND|very-kind	kinase non-catalytic C-lobe domain (KIND) containing 1	protein-coding	4.390	2.738	0.752	3.848	1.455	1.129	2.082	1.874	3.216	3.574	1.393	1.100	2.466	3.170	2.988	4.283	2.629	5.264	0.811	0.840	0.462	1.001	0.458	0.485	5.026
9183	chr3	27124686	27138223	+	0	NA	intron (NM_007900, intron 14 of 24)	B3|SINE|B2	22400	NM_007900	13605	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536|mKIAA4037	ect2 oncogene	protein-coding	4.654	1.279	0.653	nan	3.667	1.927	4.381	2.691	nan	3.675	1.170	1.071	6.531	7.412	nan	5.080	3.624	nan	1.053	1.091	0.881	2.198	0.727	0.600	4.486
9072	chr2	173104349	173109332	+	0	NA	intron (NM_001081387, intron 7 of 10)	intron (NM_001081387, intron 7 of 10)	12685	NM_001081387	664799	Mm.389396	NM_001081387	ENSMUSG00000070495	Ctcfl	Boris|OTTMUSG00000016680	CCCTC-binding factor (zinc finger protein)-like	protein-coding	3.642	1.338	0.578	3.650	2.290	0.894	4.715	8.091	3.963	5.177	3.139	1.291	5.568	5.425	5.113	8.084	4.680	4.091	0.862	0.654	0.492	1.186	0.516	0.409	7.983
14546	chr8	108378289	108380502	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	205282	NR_077224	109215	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	7.363	8.478	1.445	10.525	2.688	1.684	5.836	8.594	5.953	10.320	5.378	3.272	7.916	7.305	10.723	11.834	4.319	10.092	4.371	1.696	3.099	nan	2.681	2.858	17.271
13902	chr7	149220549	149221982	+	0	NA	Intergenic	Intergenic	3906430	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	3.186	nan	0.934	5.452	1.848	0.762	1.291	2.411	2.729	2.491	1.729	1.288	1.733	3.436	3.424	3.508	2.405	5.028	1.798	0.807	0.764	2.387	nan	0.568	4.077
8686	chr2	132037354	132038744	+	0	NA	Intergenic	L1_Mus3|LINE|L1	-8061	NM_175445	215653	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	7.444	1.061	0.595	2.253	6.429	5.454	5.287	9.936	3.043	4.153	2.900	4.541	5.308	6.047	5.157	6.045	5.595	4.365	nan	1.198	1.445	1.158	1.067	1.338	6.133
4124	chr13	51884702	51889076	+	0	NA	Intergenic	Intergenic	40214	NM_011817	23882	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	5.978	11.179	3.250	4.707	3.084	1.507	5.138	5.850	3.875	9.314	3.421	2.480	5.537	7.935	7.461	6.683	3.249	6.228	3.300	nan	2.508	4.836	2.911	2.471	10.729
9272	chr3	50997943	51001017	+	0	NA	Intergenic	MTE2a|LTR|ERVL-MaLR	-224967	NM_009834	12457	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	4.912	13.009	9.370	3.644	4.981	3.991	3.055	3.605	3.068	3.285	3.122	3.888	3.394	3.938	4.185	3.575	2.456	4.006	2.497	1.613	1.567	4.179	2.001	1.721	4.325
12789	chr6	134947803	134951549	+	0	NA	intron (NR_037956, intron 1 of 1)	intron (NR_037956, intron 1 of 1)	20584	NR_037955	381822	Mm.5935	NR_037955	ENSMUSG00000098318	Lockd	1190002F15Rik|AI120476|Droc	lncRNA downstream of Cdkn1b	ncRNA	3.901	0.636	0.600	1.237	2.704	1.559	6.034	4.348	3.780	4.017	1.237	1.820	3.751	5.630	3.661	5.241	4.085	4.173	nan	0.670	0.745	0.654	0.722	0.557	4.495
4936	chr14	103868206	103869074	+	0	NA	Intergenic	L1Md_A|LINE|L1	-24164	NM_001136061	13618	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	5.710	4.489	2.631	2.801	3.067	3.466	2.914	4.361	2.465	3.700	2.888	0.951	1.647	4.228	4.308	3.628	2.455	2.553	2.012	2.934	0.423	2.682	3.979	3.537	2.519
15304	chr9	74945135	74949378	+	0	NA	Intergenic	Intergenic	-5797	NM_001113283	235493	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	0.745	6.642	4.533	0.788	0.458	0.146	0.518	0.468	0.625	0.780	1.144	0.470	0.306	0.448	0.474	0.754	0.730	0.746	0.623	nan	0.376	0.320	0.331	0.489	nan
4985	chr14	122056138	122062205	+	0	NA	Intergenic	Intergenic	24497	NM_001037744	223262	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	5.062	1.388	0.605	4.302	2.447	1.528	4.030	5.522	4.652	6.687	1.066	0.797	5.481	6.771	nan	7.423	3.884	5.139	1.460	0.756	0.879	1.281	1.354	0.723	5.719
10818	chr4	141061906	141065356	+	0	NA	Intergenic	RMER19B|LTR|ERVK	-3086	NM_001145958	230872	Mm.80685	NM_172122	ENSMUSG00000040860	Crocc	-	ciliary rootlet coiled-coil, rootletin	protein-coding	5.118	1.252	0.454	3.901	6.080	5.120	3.527	5.210	nan	2.934	3.655	1.652	3.262	5.201	3.722	4.625	3.590	4.397	2.790	2.643	2.953	2.615	4.418	4.747	5.644
2986	chr11	115684448	115706215	+	0	NA	intron (NM_001313937, intron 1 of 4)	intron (NM_001313937, intron 1 of 4)	4203	NM_001313937	14784	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	4.780	nan	0.522	3.901	3.452	2.083	5.597	nan	3.212	nan	1.960	0.849	4.601	6.800	5.826	6.677	3.546	nan	1.828	nan	1.221	2.608	1.906	1.756	7.472
15456	chr9	106072740	106075461	+	0	NA	intron (NM_026763, intron 5 of 37)	intron (NM_026763, intron 5 of 37)	22591	NM_026763	68553	Mm.28854	NM_026763	ENSMUSG00000032572	Col6a4	1110001D15Rik|AI413310|AU023415|Dvwa|EG235580|Vwa6	collagen, type VI, alpha 4	protein-coding	6.688	11.024	3.338	8.814	2.796	1.699	5.383	6.591	5.056	7.787	6.070	3.184	5.459	6.245	7.987	9.711	3.820	7.804	5.490	2.860	3.598	6.015	3.147	3.426	12.791
13220	chr7	56398783	56402437	+	0	NA	intron (NM_021879, intron 19 of 23)	L1MDa|LINE|L1	160839	NM_021879	18431	Mm.137052	NM_021879	ENSMUSG00000030450	Oca2	D7H15S12|D7Icr28RN|D7Nic1|p|p<cas>	oculocutaneous albinism II	protein-coding	nan	0.868	0.391	2.075	0.981	0.915	2.008	1.623	1.340	1.974	0.448	0.526	2.632	2.778	1.891	2.201	1.619	3.700	5.216	1.595	1.701	4.729	4.055	3.448	2.886
12923	chr7	16528503	16531704	+	0	NA	intron (NM_172739, intron 3 of 6)	RSINE1|SINE|B4	-53323	NM_008718	18142	Mm.145821	NM_008718	ENSMUSG00000001988	Npas1	MOP5|bHLHe11	neuronal PAS domain protein 1	protein-coding	3.809	4.961	2.505	4.639	3.273	3.099	3.886	4.925	3.220	4.775	9.701	3.641	4.052	4.316	4.850	5.093	4.331	4.088	2.814	1.901	2.468	2.996	2.017	2.885	5.864
9425	chr3	87318988	87320610	+	0	NA	Intergenic	Intergenic	-38082	NM_009690	11801	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	8.252	5.077	1.065	4.925	4.762	1.930	8.994	6.725	5.332	7.136	5.414	2.814	5.947	10.011	8.115	9.144	6.747	8.231	nan	1.295	0.593	1.153	0.578	0.527	9.865
4865	chr14	76931841	76933940	+	0	NA	Intergenic	Intergenic	103727	NM_172488	210808	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase (multicopper oxidoreductase) domain containing 1	protein-coding	0.432	0.561	0.316	0.658	0.762	0.232	0.564	0.758	0.410	0.629	0.773	0.268	0.271	nan	0.668	0.740	0.411	0.910	4.018	2.374	2.064	4.308	4.683	4.342	0.763
3558	chr12	85738103	85744244	+	0	NA	Intergenic	B1_Mur4|SINE|Alu	-5366	NM_145447	217721	Mm.301076	NM_145447	ENSMUSG00000034258	Mfsd7c	CCT|Flvcr2	major facilitator superfamily domain containing 7C	protein-coding	4.754	0.572	0.690	1.623	2.088	1.700	3.791	7.330	1.607	1.844	2.921	1.889	2.861	5.390	3.079	3.828	4.530	2.016	0.649	0.711	0.643	0.586	0.605	0.605	nan
3294	chr12	36878967	36880029	+	0	NA	Intergenic	B4|SINE|B4	63293	NR_039558	100628578		NR_039558	ENSMUSG00000092998	Mir5099	mmu-mir-5099|mu-mir-5099	microRNA 5099	ncRNA	7.037	nan	0.942	0.974	0.965	1.666	4.958	3.564	1.664	1.847	2.270	1.822	3.260	3.409	3.672	2.749	4.286	2.218	nan	1.874	1.815	1.947	2.248	2.377	5.000
8020	chr2	25187474	25189046	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	7502	NM_025980	67122	Mm.46539	NM_025980	ENSMUSG00000078202	Nrarp	2700054M22Rik	Notch-regulated ankyrin repeat protein	protein-coding	8.158	12.271	2.656	8.904	2.335	1.409	6.539	9.189	nan	7.039	6.362	3.064	7.932	7.709	8.007	11.786	6.953	8.823	4.676	1.955	1.970	5.643	2.612	2.836	14.732
4307	chr13	97694879	97695832	+	0	NA	Intergenic	Intergenic	135355	NR_046157	328314	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0.948	1.591	0.342	2.201	0.297	0.148	2.973	2.731	3.245	7.740	2.386	3.345	3.515	3.489	3.987	1.584	nan	2.954	2.560	0.453	0.650	5.839	1.141	1.767	2.380
2586	chr11	86688069	86689258	+	0	NA	intron (NM_175004, intron 2 of 2)	PB1D10|SINE|Alu	4582	NM_001098810	217057	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	3.012	0.759	0.160	3.196	1.168	0.320	3.731	3.504	2.163	3.615	1.109	1.636	3.377	3.945	5.353	4.170	2.599	4.391	1.079	0.904	0.235	nan	0.873	0.827	3.833
11971	chr5	149368001	149371492	+	0	NA	Intergenic	Intergenic	-42060	NM_027519	70717	Mm.252139	NM_027519	ENSMUSG00000029659	Medag	6330406I15Rik|Awms3|MEDA-4|Meda4|mAWMS3	mesenteric estrogen dependent adipogenesis	protein-coding	3.751	1.485	1.138	nan	4.364	2.962	3.276	3.762	2.622	3.204	0.863	0.627	2.964	5.348	3.970	5.433	4.287	3.558	0.606	1.038	0.878	0.683	1.081	0.703	2.764
14115	chr8	32221141	32225867	+	0	NA	Intergenic	Intergenic	71609	NR_046039	666589	Mm.367675	NR_046039		Gm8179	EG666589	predicted gene 8179	ncRNA	4.798	5.758	1.704	4.747	2.307	1.463	2.980	4.474	2.644	3.436	3.689	1.516	3.158	3.875	5.685	6.307	3.222	4.947	2.598	1.770	1.323	5.141	1.764	1.704	7.236
9079	chr2	174021369	174024721	+	0	NA	Intergenic	Intergenic	-54006	NM_172675	228960	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	0.260	0.574	0.329	0.318	0.141	0.075	0.240	0.216	0.264	0.271	0.209	0.282	0.152	0.200	0.286	nan	0.470	nan	0.621	0.857	0.572	3.329	0.455	0.328	nan
14357	chr8	77718373	77723655	+	0	NA	intron (NM_010332, intron 1 of 7)	intron (NM_010332, intron 1 of 7)	3438	NM_010332	13617	Mm.283168	NM_010332	ENSMUSG00000031616	Ednra	ET-AR|ETa|Gpcr10	endothelin receptor type A	protein-coding	2.098	nan	0.518	1.810	1.046	0.300	nan	4.168	nan	1.723	0.425	0.378	3.596	5.063	6.322	nan	3.995	3.025	3.121	1.863	0.729	nan	2.943	1.710	nan
1184	chr10	24351950	24361618	+	0	NA	Intergenic	Intergenic	133267	NM_021509	59012	Mm.285934	NM_021509	ENSMUSG00000020000	Moxd1	3230402N08Rik|MNCb-5203	monooxygenase, DBH-like 1	protein-coding	5.165	2.709	1.422	1.663	1.118	0.986	3.722	2.947	2.751	2.056	6.735	5.752	4.191	3.903	2.974	3.378	2.465	2.407	1.199	1.246	0.912	1.507	0.900	0.567	1.744
14701	chr8	123259058	123268597	+	0	NA	intron (NM_020497, intron 6 of 10)	B3|SINE|B2	-9605	NM_028200	72325	Mm.276193	NM_028200	ENSMUSG00000001062	Vps9d1	1300018I17Rik|2410004N05Rik|5DOS1|Vsp9d1	VPS9 domain containing 1	protein-coding	5.492	15.550	5.282	4.335	1.703	0.901	nan	5.707	3.108	3.417	2.359	1.482	3.407	4.035	3.822	4.016	2.097	3.727	nan	1.274	1.345	nan	0.839	nan	4.921
9085	chr2	174571022	174575609	+	0	NA	Intergenic	MLTR18D_MM|LTR|ERVK	-70219	NM_001099328	100043757	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	ENSMUSG00000050600|OTTMUSG00000017459	zinc finger protein 831	protein-coding	4.715	0.892	0.447	3.219	2.879	1.234	5.544	4.885	3.494	3.857	0.494	0.421	6.437	6.696	5.928	7.364	3.711	7.068	1.402	0.733	0.399	2.123	1.319	0.778	7.915
8295	chr2	61419637	61421704	+	0	NA	Intergenic	Intergenic	-157916	NM_011529	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	2.757	5.402	6.017	1.896	1.962	1.459	0.838	1.819	1.095	1.919	0.559	0.728	0.630	1.259	0.821	1.171	2.211	1.021	1.077	2.167	1.363	0.757	0.633	0.915	0.645
7796	chr19	44366266	44378143	+	0	NA	Intergenic	RLTR20D|LTR|ERVK	35505	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	5.603	3.623	1.270	nan	3.215	1.668	5.985	6.191	3.543	4.758	3.346	1.927	4.301	5.986	5.087	6.870	4.914	nan	2.100	1.671	1.520	3.062	2.478	2.109	8.853
6046	chr16	34997376	34998593	+	0	NA	intron (NM_139300, intron 31 of 31)	intron (NM_139300, intron 31 of 31)	-24437	NM_023587	70757	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	3.988	3.310	3.131	2.359	2.284	1.265	4.388	3.387	2.969	3.425	0.628	0.540	3.468	4.713	3.478	4.858	3.276	5.663	0.763	0.484	0.222	0.391	0.620	0.730	3.883
9857	chr3	144764623	144769037	+	0	NA	Intergenic	ETnERV2-int|LTR|ERVK	-5853	NM_009899	12722	Mm.454553	NM_009899	ENSMUSG00000056025	Clca3a1	Cacc|Clca1	chloride channel accessory 3A1	protein-coding	4.230	1.365	0.801	2.074	2.434	0.979	2.540	1.660	2.719	1.946	6.562	1.607	3.237	3.016	2.385	2.981	1.488	3.514	3.972	2.077	1.146	3.617	2.583	1.717	3.540
7944	chr2	5771912	5773242	+	0	NA	Intergenic	Intergenic	-57815	NM_177343	227541	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	2.874	1.546	0.491	1.874	1.462	0.813	3.043	2.020	1.946	1.701	1.009	0.193	2.392	3.003	2.820	5.837	4.396	3.100	0.621	0.522	0.122	0.852	0.132	0.238	3.365
9803	chr3	131156102	131156938	+	0	NA	intron (NM_001276403, intron 3 of 11)	intron (NM_001276403, intron 3 of 11)	43729	NM_001276403	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	1.982	0.582	0.679	1.137	1.836	0.712	4.927	6.259	1.494	1.793	3.074	3.184	3.647	3.547	2.075	nan	nan	1.295	3.714	3.220	1.861	1.781	8.500	5.058	0.638
14774	chr8	127099006	127101709	+	0	NA	intron (NM_001309391, intron 1 of 24)	intron (NM_001309391, intron 1 of 24)	36301	NM_001309391	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0.816	nan	0.236	nan	0.529	0.413	nan	4.976	1.894	2.067	0.441	0.446	1.801	1.433	2.935	2.489	1.690	nan	6.300	5.603	6.094	12.794	6.979	7.299	nan
7590	chr19	12531678	12532774	+	0	NA	Intergenic	Intergenic	-30230	NM_172442	207521	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	5.135	7.331	5.224	2.661	2.408	1.401	1.739	2.274	3.120	3.985	3.156	1.685	2.920	3.615	2.484	4.677	3.279	3.814	0.840	1.771	0.829	0.495	0.496	0.727	2.862
8597	chr2	120675390	120676889	+	0	NA	Intergenic	L1ME1|LINE|L1	55378	NM_026891	68968	Mm.2289	NM_026891	ENSMUSG00000027284	Cdan1	1500015A01Rik|AI448026|AW492297|CDA-I|CDA1|CDAI	congenital dyserythropoietic anemia, type I (human)	protein-coding	4.686	5.484	1.944	5.808	1.641	0.589	3.026	4.048	1.969	5.901	2.165	1.251	nan	4.865	5.315	8.121	4.365	4.765	4.207	1.433	1.471	5.237	2.085	2.414	10.413
5603	chr15	97085532	97097397	+	0	NA	Intergenic	Lx4B|LINE|L1	-35508	NM_027052	69354	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	1.151	12.652	6.160	1.250	0.553	0.289	0.877	0.929	0.779	0.761	0.365	0.396	1.042	0.581	0.801	nan	0.809	1.245	0.568	1.038	0.649	0.983	0.377	0.319	0.868
13380	chr7	87791526	87793480	+	0	NA	intron (NM_001143834, intron 3 of 10)	intron (NM_001143834, intron 3 of 10)	208335	NM_001143834	108071	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	6.922	5.280	2.529	5.740	6.229	4.529	3.911	6.432	4.194	4.759	3.039	1.697	5.269	6.070	5.916	nan	5.139	6.169	6.019	3.484	3.547	nan	5.217	3.931	5.752
8829	chr2	153265864	153271995	+	0	NA	3' UTR (NM_080463, exon 7 of 7)	3' UTR (NM_080463, exon 7 of 7)	-22487	NM_008444	16569	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	7.236	1.786	0.731	4.457	1.760	1.223	8.700	8.763	nan	nan	1.196	1.720	6.198	6.643	6.657	8.723	6.812	5.235	nan	1.521	1.945	2.494	1.878	1.990	13.144
8618	chr2	124543031	124547359	+	0	NA	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-65101	NM_199238	214968	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	10.315	1.333	0.765	2.956	4.253	1.927	9.756	8.664	3.929	2.967	1.446	1.343	8.601	10.063	4.981	4.305	6.014	4.555	nan	1.348	0.547	1.410	0.694	0.531	5.906
12052	chr6	11856610	11858809	+	0	NA	Intergenic	Lx7|LINE|L1	49737	NM_010886	17992	Mm.415865	NM_010886	ENSMUSG00000029632	Ndufa4	MLRQ	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4	protein-coding	8.698	9.673	3.680	8.739	4.813	2.118	9.455	9.898	7.625	8.285	7.951	3.854	8.917	10.847	10.746	12.570	8.967	9.358	4.776	4.237	2.315	6.380	4.229	3.492	nan
8756	chr2	146295867	146301274	+	0	NA	intron (NM_001033348, intron 38 of 40)	intron (NM_001033348, intron 38 of 40)	39284	NR_040619	77806	Mm.392819	NR_040619	ENSMUSG00000085958	A930019D19Rik	-	RIKEN cDNA A930019D19 gene	ncRNA	3.338	0.970	0.300	3.480	2.719	1.150	1.718	4.283	3.336	3.822	1.148	0.920	4.751	4.893	3.002	3.611	4.326	5.234	nan	1.063	0.679	1.514	1.286	0.935	2.565
7977	chr2	13710243	13715829	+	0	NA	intron (NM_145838, intron 3 of 7)	MLT1F|LTR|ERVL-MaLR	80484	NM_145838	241230	Mm.330004	NM_145838	ENSMUSG00000003418	St8sia6	1700007J08Rik|AI314453|AI875066|ST8SiaVI|Siat8f	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding	4.108	2.878	1.493	2.119	1.353	0.772	7.378	6.445	3.323	3.096	0.363	0.914	6.128	3.462	5.690	6.093	7.238	4.633	0.551	0.980	0.707	0.439	0.329	0.366	6.606
11703	chr5	124130281	124134805	+	0	NA	intron (NM_011256, intron 10 of 24)	intron (NM_011256, intron 10 of 24)	16435	NM_144509	65105	Mm.29430	NM_144509	ENSMUSG00000029404	Arl6ip4	AA408210|AA408365|Aip-4|Srp25	ADP-ribosylation factor-like 6 interacting protein 4	protein-coding	7.891	5.637	2.209	9.887	6.515	4.962	7.257	7.323	5.690	10.099	7.417	3.913	6.058	8.594	nan	7.488	5.963	7.578	5.230	3.190	3.310	4.819	nan	4.918	nan
11085	chr5	28386775	28388571	+	0	NA	exon (NM_028234, exon 12 of 19)	exon (NM_028234, exon 12 of 19)	70484	NM_028234	381626	Mm.304075	NM_028234	ENSMUSG00000048271	Rbm33	3200001K10Rik|6430512A10Rik|AA386890|Prr8	RNA binding motif protein 33	protein-coding	4.155	0.859	0.284	3.644	2.140	0.885	6.664	2.979	3.364	5.064	0.535	0.686	5.597	6.477	8.066	7.159	4.458	6.103	4.435	2.250	1.478	4.032	2.822	2.067	7.985
9243	chr3	37636705	37637693	+	0	NA	Intergenic	Intergenic	-2748	NM_001305441	24063	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty homolog 1 (Drosophila)	protein-coding	2.759	2.083	0.979	3.140	1.563	0.582	4.006	1.863	2.342	1.974	3.229	0.879	3.002	3.915	2.647	3.242	1.496	3.230	nan	0.261	0.868	nan	0.266	0.167	3.049
8994	chr2	165812312	165813370	+	0	NA	exon (NM_001281926, exon 14 of 23)	exon (NM_001281926, exon 14 of 23)	45332	NM_001252585	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	5.864	2.723	2.199	5.998	2.741	1.162	8.175	6.429	2.981	4.026	6.084	2.938	5.873	3.854	6.013	7.612	5.667	5.002	3.469	2.796	1.311	3.110	3.444	2.135	7.766
10050	chr4	46501741	46503456	+	0	NA	exon (NM_053179, exon 6 of 6)	exon (NM_053179, exon 6 of 6)	13269	NM_053179	94181	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	6.638	8.044	3.087	4.340	4.760	1.416	4.687	5.796	3.016	4.989	4.607	2.859	2.926	6.255	4.451	6.285	3.603	4.227	4.738	3.599	2.435	3.981	3.040	3.239	7.838
9902	chr4	6644818	6647804	+	0	NA	Intergenic	RMER1B|Other|Other	-192040	NM_010945	18201	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	1.169	0.851	0.441	1.157	0.209	0.288	0.412	nan	1.206	1.062	0.524	0.217	1.186	1.481	0.958	1.351	0.556	2.549	3.414	nan	0.693	4.549	1.269	0.936	1.102
5047	chr15	10699742	10701640	+	0	NA	intron (NM_001166408, intron 1 of 17)	intron (NM_001166408, intron 1 of 17)	12849	NM_030690	75646	Mm.212395	NM_030690	ENSMUSG00000022246	Rai14	1700008J19Rik|1700020L11Rik|Ankycorbin|Norpeg|mKIAA1334	retinoic acid induced 14	protein-coding	8.341	2.289	0.890	5.634	7.857	3.490	6.032	4.500	3.868	4.676	3.722	2.805	6.098	4.076	4.350	3.260	1.978	6.358	0.788	1.388	1.162	0.753	0.777	0.459	3.854
2869	chr11	105234813	105239798	+	0	NA	intron (NM_001294330, intron 6 of 17)	intron (NM_001294330, intron 6 of 17)	-55341	NM_008626	17534	Mm.235616	NM_008626	ENSMUSG00000020695	Mrc2	Endo180|mKIAA0709|uPARAP	mannose receptor, C type 2	protein-coding	0.547	0.701	0.500	nan	0.416	0.216	0.608	0.845	nan	nan	0.409	0.465	0.893	nan	0.856	1.079	0.737	nan	4.800	2.535	2.324	6.280	2.897	2.353	0.921
10435	chr4	118181297	118182831	+	0	NA	Intergenic	Intergenic	-2021	NM_001161823	230674	Mm.234234	NM_172382	ENSMUSG00000033326	Kdm4a	D4Ertd222e|JHDM3A|Jmjd2|Jmjd2a|mKIAA0677	lysine (K)-specific demethylase 4A	protein-coding	2.570	0.406	0.234	2.594	2.421	1.801	1.535	2.065	1.834	2.694	0.792	0.678	2.804	3.197	1.250	nan	1.379	2.133	0.488	1.342	1.714	0.634	0.796	0.251	4.687
9473	chr3	89379641	89390949	+	0	NA	intron (NM_009565, intron 1 of 2)	intron (NM_009565, intron 1 of 2)	-6569	NR_040403	545539	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	ENSMUSG00000074466|OTTMUSG00000021274	predicted gene 15417	ncRNA	4.387	0.602	0.338	2.208	2.767	1.753	3.453	3.292	2.078	3.143	0.738	0.506	3.516	5.038	3.087	3.379	2.663	2.828	4.515	2.738	2.201	5.767	2.949	2.201	4.484
13818	chr7	138553369	138555162	+	0	NA	promoter-TSS (NR_131022)	promoter-TSS (NR_131022)	23	NR_131022	75187	Mm.410810	NR_131022	ENSMUSG00000110037	4930543N07Rik	-	RIKEN cDNA 4930543N07 gene	ncRNA	10.335	7.925	3.235	11.382	6.893	5.923	7.545	10.777	nan	9.459	5.445	3.467	6.983	8.548	6.225	7.737	6.468	8.061	4.038	3.178	5.533	4.610	4.294	5.578	12.530
15725	chrX	48370175	48372915	+	0	NA	intron (NM_178782, intron 5 of 14)	MIRb|SINE|MIR	30187	NM_178782	320376	Mm.210146	NM_178782	ENSMUSG00000036959	Bcorl1	6720425J07Rik|B930011H20Rik	BCL6 co-repressor-like 1	protein-coding	5.982	6.839	2.756	5.679	2.912	1.696	4.265	4.769	3.203	6.585	4.596	2.376	4.061	5.240	5.130	6.610	2.799	6.057	3.005	1.562	1.566	3.207	1.777	2.025	9.134
7555	chr19	10112635	10119005	+	0	NA	Intergenic	Intergenic	-14317	NM_019699	56473	Mm.38901	NM_019699	ENSMUSG00000024665	Fads2	2900042M13Rik|Fadsd2	fatty acid desaturase 2	protein-coding	5.623	1.925	0.483	5.391	2.533	0.954	7.147	7.257	nan	5.851	3.727	1.912	6.184	8.391	7.603	8.298	5.315	8.732	0.481	0.581	0.680	1.355	0.691	0.630	11.293
4220	chr13	63366832	63385526	+	0	NA	intron (NM_001347514, intron 4 of 15)	intron (NM_001347514, intron 4 of 15)	55566	NM_001347515	14088	Mm.126106	NM_007985	ENSMUSG00000021461	Fancc	Facc	Fanconi anemia, complementation group C	protein-coding	3.629	1.721	0.890	5.075	2.031	0.864	2.585	3.054	4.212	3.481	5.446	3.328	2.613	3.284	3.396	nan	2.247	5.665	9.119	3.228	1.396	7.364	4.730	2.804	4.085
10543	chr4	128479043	128484617	+	0	NA	intron (NM_001281955, intron 39 of 70)	(TG)n|Simple_repeat|Simple_repeat	128268	NM_177758	269585	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding	7.921	8.438	3.817	6.400	4.205	2.688	5.407	5.550	5.272	13.507	7.704	3.239	5.105	8.646	5.716	7.664	4.738	7.780	3.830	2.810	3.106	3.916	3.266	3.328	14.516
10488	chr4	123069982	123072073	+	0	NA	Intergenic	B1_Mur1|SINE|Alu	-34134	NM_007559	12164	Mm.439764	NM_007559	ENSMUSG00000002384	Bmp8b	Op3	bone morphogenetic protein 8b	protein-coding	0.404	5.273	4.147	0.693	0.345	0.293	0.567	0.430	0.438	0.594	0.716	0.459	0.189	0.494	nan	0.619	0.467	0.670	1.288	1.224	0.633	0.767	1.739	1.278	0.316
6511	chr17	29805750	29809575	+	0	NA	Intergenic	B2_Mm2|SINE|B2	80220	NM_001081160	74762	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding	1.034	1.608	1.207	1.286	1.393	1.028	0.744	0.944	1.071	0.740	0.989	0.749	0.375	0.933	0.668	nan	1.360	0.948	4.483	2.297	2.122	1.707	7.894	7.272	0.757
939	chr1	182258988	182264497	+	0	NA	Intergenic	RLTR4_MM-int|LTR|ERV1	21017	NM_007853	13244	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	7.477	17.215	4.494	10.372	2.909	1.438	4.664	4.823	4.427	7.374	3.072	2.105	5.383	nan	6.329	8.886	5.381	8.229	1.773	1.128	1.090	1.321	1.009	0.899	9.465
12057	chr6	14666387	14669303	+	0	NA	Intergenic	L1_Mus3|LINE|L1	87429	NM_080464	140491	Mm.209429	NM_080464	ENSMUSG00000042717	Ppp1r3a	GM|RG1|RGL	protein phosphatase 1, regulatory (inhibitor) subunit 3A	protein-coding	2.356	nan	0.314	1.529	3.142	0.541	4.485	1.494	4.014	3.557	0.309	0.750	5.307	3.630	4.659	6.611	5.127	5.402	0.855	0.337	0.210	0.765	0.440	0.408	1.570
5222	chr15	59369121	59384999	+	0	NA	intron (NM_001164604, intron 1 of 4)	intron (NM_001164604, intron 1 of 4)	2862	NM_001164604	68501	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	4.325	2.259	0.977	nan	3.444	1.937	5.228	nan	nan	nan	3.724	2.294	6.271	6.813	6.168	nan	3.683	6.079	1.493	1.087	0.896	1.652	1.168	0.780	4.019
4095	chr13	48476813	48481753	+	0	NA	Intergenic	Intergenic	34127	NM_001164575	67911	Mm.251375	NM_026450	ENSMUSG00000050954	Zfp169	1700025J14Rik|4930429A13Rik|BE688704	zinc finger protein 169	protein-coding	nan	0.568	0.252	nan	0.139	0.138	0.358	0.342	0.251	0.227	0.320	0.312	0.127	0.316	0.243	0.481	0.277	nan	7.646	nan	3.221	10.345	4.436	3.344	nan
1670	chr10	96857656	96863246	+	0	NA	Intergenic	Intergenic	-175317	NR_045358	75301	Mm.108650	NR_045358		4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA	5.664	0.501	0.431	1.395	1.163	0.604	4.500	3.452	3.318	4.291	nan	0.877	6.566	4.589	4.169	3.120	6.139	3.477	nan	0.886	0.415	nan	0.833	0.626	2.744
2010	chr11	20449346	20456646	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	-90257	NM_021372	58172	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	nan	7.948	4.628	1.589	0.594	0.486	0.718	1.009	1.279	1.131	1.304	1.724	0.475	0.736	1.081	1.136	1.116	nan	0.992	0.977	0.816	0.952	0.677	0.391	0.766
6170	chr16	85168966	85171229	+	0	NA	intron (NM_007471, intron 1 of 15)	intron (NM_007471, intron 1 of 15)	3610	NM_001198825	11820	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	4.322	nan	0.659	2.278	2.185	0.866	3.879	5.621	3.020	2.593	2.039	2.114	2.857	3.803	2.963	3.295	3.011	4.668	2.982	2.316	1.191	nan	2.293	1.682	3.395
3342	chr12	56563269	56568043	+	0	NA	Intergenic	Intergenic	-25403	NR_046003	97836	Mm.410567	NR_046002	ENSMUSG00000092515	C87198	-	expressed sequence C87198	ncRNA	9.199	7.577	3.124	9.062	4.915	2.992	4.329	5.450	4.509	4.971	5.265	4.477	4.191	6.911	5.831	5.722	4.334	5.970	7.688	4.323	3.332	7.863	5.889	4.712	7.742
15571	chr9	118671282	118673715	+	0	NA	intron (NM_133721, intron 10 of 27)	intron (NM_133721, intron 10 of 27)	-39194	NM_001113514	104099	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.508	0.793	0.537	2.949	2.456	1.683	1.540	2.014	2.364	2.867	0.522	0.446	1.776	3.881	2.194	3.909	1.943	3.821	1.704	1.148	0.771	1.459	nan	1.013	4.224
13394	chr7	88716159	88718823	+	0	NA	Intergenic	L1Md_T|LINE|L1	287218	NM_028238	72433	Mm.276669	NM_028238	ENSMUSG00000030559	Rab38	2310011F14Rik|AU043391|cht	RAB38, member RAS oncogene family	protein-coding	8.650	9.427	3.097	9.607	6.394	3.882	7.918	11.711	6.343	13.683	3.765	4.060	9.672	10.313	9.267	9.384	6.623	9.959	5.250	2.988	2.576	6.349	4.576	4.983	13.011
9767	chr3	121916861	121918581	+	0	NA	Intergenic	Intergenic	-35605	NM_172525	214137	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	0.760	0.766	0.380	0.774	0.276	0.286	0.568	1.034	0.654	nan	4.833	2.606	0.283	0.433	0.546	nan	0.663	0.970	0.602	0.586	0.214	0.548	nan	0.803	nan
1537	chr10	82379687	82381119	+	0	NA	Intergenic	Intergenic	112215	NM_001255990	432480	Mm.280394	NM_001255990	ENSMUSG00000094186	Gm1553	Lcrn	predicted gene 1553	protein-coding	6.007	0.422	0.760	nan	1.268	0.957	1.019	0.728	1.623	2.240	0.901	0.295	4.393	2.952	nan	1.869	2.440	1.526	nan	0.354	0.713	0.728	0.252	0.255	9.572
894	chr1	173956565	173958002	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-14611	NM_001302650	15950	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Mndal	interferon activated gene 203	protein-coding	5.271	7.738	2.526	4.423	2.170	1.722	4.423	3.736	3.625	5.847	3.227	2.318	3.247	nan	5.709	9.006	5.024	5.548	3.889	3.166	2.939	5.341	3.314	3.928	8.868
13849	chr7	144601142	144603825	+	0	NA	intron (NM_001242349, intron 21 of 24)	intron (NM_001242349, intron 21 of 24)	-20047	NM_010175	14082	Mm.5126	NM_010175	ENSMUSG00000031077	Fadd	Mort1/FADD	Fas (TNFRSF6)-associated via death domain	protein-coding	nan	9.913	4.053	nan	4.073	3.899	4.826	6.797	nan	7.526	3.749	1.981	7.040	7.761	5.535	7.002	5.465	6.822	2.719	1.716	2.783	3.129	nan	2.911	10.137
1298	chr10	56875801	56879766	+	0	NA	Intergenic	Intergenic	500483	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	6.326	0.519	0.141	3.216	2.956	1.531	3.171	2.591	4.286	4.457	1.303	0.702	5.414	5.369	3.956	4.897	5.104	5.559	nan	0.431	0.171	0.367	0.393	0.140	4.296
3425	chr12	74201809	74215722	+	0	NA	intron (NM_172804, intron 2 of 6)	L1M2|LINE|L1	-75511	NR_030734	74284	Mm.287421	NR_030733	ENSMUSG00000071265	1700086L19Rik	1700006L05Rik|AU016007	RIKEN cDNA 1700086L19 gene	ncRNA	2.554	0.737	0.497	0.965	0.636	0.318	0.656	1.151	0.691	1.384	0.710	0.811	0.933	nan	0.788	nan	2.309	0.839	7.932	4.529	3.933	7.116	7.132	6.567	2.350
140	chr1	40378341	40383326	+	0	NA	Intergenic	Intergenic	-48737	NM_001294171	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	5.529	2.042	1.251	2.885	1.463	0.744	4.439	3.769	3.434	3.091	4.846	2.599	4.666	3.333	3.798	7.415	4.098	3.855	0.673	0.865	0.610	0.486	0.397	0.335	3.995
14032	chr8	12823317	12827815	+	0	NA	intron (NR_121603, intron 8 of 29)	intron (NR_121603, intron 8 of 29)	6353	NR_045775	100504249	Mm.441494	NR_045775	ENSMUSG00000084780	Gm15350	OTTMUSG00000020611	predicted gene 15350	ncRNA	5.333	0.895	0.350	5.169	3.681	1.419	4.865	6.005	5.310	8.240	1.324	1.055	10.489	8.445	9.705	11.087	5.686	8.809	1.338	0.650	0.502	1.587	0.620	0.416	10.574
13973	chr8	4237205	4239855	+	0	NA	promoter-TSS (NM_001164172)	promoter-TSS (NM_001164172)	-210	NM_011944	26400	Mm.3906	NM_011944	ENSMUSG00000002948	Map2k7	5930412N11Rik|JNKK 2|Jnkk2|MAPKK 7|MEK 7|Mapkk7|Mek7|Mkk7|Prkmk7|sek2	mitogen-activated protein kinase kinase 7	protein-coding	9.779	9.655	2.928	8.253	4.897	3.261	6.781	9.318	5.815	8.546	6.190	4.984	9.134	10.152	9.443	11.437	7.171	9.464	4.350	2.978	3.469	7.558	2.630	2.559	14.520
15463	chr9	106204401	106206763	+	0	NA	intron (NM_011876, intron 1 of 8)	B1_Mus1|SINE|Alu	2474	NM_011876	23999	Mm.274346	NM_011876	ENSMUSG00000023277	Twf2	A6-related|AU014993|Ptk9l|Ptk9r	twinfilin actin binding protein 2	protein-coding	2.425	3.031	1.386	4.964	3.497	1.779	3.964	4.167	nan	4.842	3.076	3.354	4.763	6.901	3.845	3.731	1.875	4.346	4.289	0.871	1.017	2.881	3.256	2.683	5.570
13647	chr7	120578384	120581625	+	0	NA	Intergenic	Intergenic	-17621	NR_024324	78552	Mm.289190	NR_024324	ENSMUSG00000044141	E130201H02Rik	-	Y box protein 1 pseudogene	pseudo	1.663	0.631	0.759	1.741	2.098	1.907	3.644	4.863	4.989	3.821	2.854	5.085	6.422	4.546	4.047	3.842	4.304	4.126	0.680	0.754	0.342	0.704	0.680	0.829	1.629
12545	chr6	100012289	100014620	+	0	NA	Intergenic	B4|SINE|B4	273904	NM_019743	56353	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	2.882	0.761	0.421	2.288	2.779	1.396	1.616	4.408	2.850	3.993	0.544	0.889	2.601	5.187	nan	3.771	2.066	3.018	nan	nan	0.515	1.221	1.351	1.070	2.162
11249	chr5	54834450	54838844	+	0	NA	Intergenic	Intergenic	486655	NR_038045	330086	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13|ENSMUSG00000072936	predicted gene 10440	ncRNA	2.148	0.360	0.378	1.910	2.148	1.302	1.146	0.745	2.531	3.666	0.345	0.253	2.010	4.944	2.967	2.043	1.229	3.536	0.398	0.603	0.335	1.089	0.219	0.172	1.585
4950	chr14	115440163	115442637	+	0	NA	intron (NM_175500, intron 5 of 7)	Lx3_Mus|LINE|L1	-31848	NR_045761	75088	Mm.444706	NR_045761	ENSMUSG00000093551	4930505G20Rik	-	RIKEN cDNA 4930505G20 gene	ncRNA	3.765	8.707	2.523	5.554	1.863	2.222	5.559	5.904	2.083	11.916	4.370	1.700	4.362	4.840	6.207	6.769	2.949	5.075	2.437	0.967	2.218	3.219	1.649	4.263	11.461
7468	chr19	4018450	4019941	+	0	NA	Intergenic	URR1A|DNA|hAT-Charlie	-6440	NM_133666	17995	Mm.29842	NM_133666	ENSMUSG00000037916	Ndufv1	CI-51kD	NADH dehydrogenase (ubiquinone) flavoprotein 1	protein-coding	3.675	1.626	0.565	3.119	2.371	1.845	3.697	9.552	3.011	3.406	2.797	1.642	3.186	5.535	5.186	5.123	3.851	4.551	1.807	1.751	1.694	4.242	2.672	3.688	5.977
5393	chr15	78087508	78088789	+	0	NA	intron (NM_007583, intron 1 of 3)	IMPB_01|Satellite|Satellite	31132	NM_007583	12300	Mm.277338	NM_007583	ENSMUSG00000019146	Cacng2	AW060990|B230105C07Rik|B930041E13Rik|stargazer|stargazin|stg|wag|waggler	calcium channel, voltage-dependent, gamma subunit 2	protein-coding	5.323	5.482	3.037	2.530	2.158	1.213	2.204	2.588	1.884	2.834	4.006	0.679	2.020	2.943	2.040	2.556	1.678	2.345	0.937	1.798	0.938	nan	0.629	0.389	3.719
985	chr1	184838211	184839772	+	0	NA	intron (NM_133684, intron 2 of 7)	intron (NM_133684, intron 2 of 7)	6856	NM_133684	67247	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	3.471	0.870	0.595	2.115	0.984	0.736	1.958	2.985	1.448	1.405	1.217	1.058	2.838	4.147	4.231	4.223	2.890	3.089	1.929	0.445	0.927	1.201	1.205	1.280	2.904
754	chr1	155197029	155203269	+	0	NA	intron (NM_021433, intron 7 of 7)	intron (NM_021433, intron 7 of 7)	41446	NM_021433	58244	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	9.049	1.034	0.712	2.633	4.957	2.896	3.794	3.835	nan	2.660	1.113	0.804	5.407	4.267	2.908	nan	4.711	5.206	nan	0.819	0.680	0.501	nan	0.471	3.831
8248	chr2	53049351	53052062	+	0	NA	intron (NM_172409, intron 4 of 26)	intron (NM_172409, intron 4 of 26)	140481	NM_018785	56194	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP-11|FBP11|Fnbp11|Fnbp3	pre-mRNA processing factor 40A	protein-coding	10.971	12.858	5.065	10.161	4.353	3.155	9.611	10.802	6.090	11.660	7.578	4.412	8.034	9.659	9.150	12.816	10.059	9.030	6.322	4.385	3.467	6.362	5.271	5.088	17.343
10793	chr4	138988206	138989840	+	0	NA	intron (NM_001305423, intron 3 of 15)	intron (NM_001305423, intron 3 of 15)	16118	NM_029857	77056	Mm.122336	NM_029857	ENSMUSG00000041143	Tmco4	4632413C14Rik|AI430825	transmembrane and coiled-coil domains 4	protein-coding	4.892	0.788	0.395	4.533	0.871	0.513	2.499	2.714	1.487	2.095	1.442	0.999	5.229	5.079	2.643	2.628	2.611	4.439	9.782	5.208	3.340	13.301	11.099	5.803	7.323
10797	chr4	139171481	139173102	+	0	NA	Intergenic	B1F|SINE|Alu	8364	NR_033543	100038595	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	ENSMUSG00000073739|OTTMUSG00000009902|OTTMUSG00000033208	predicted gene 16287	ncRNA	4.690	5.340	3.020	8.058	7.972	5.215	7.743	3.888	nan	5.975	1.247	1.971	2.613	9.803	6.700	4.556	3.835	4.822	3.950	2.170	2.897	2.873	5.707	5.280	10.027
4147	chr13	54470647	54479056	+	0	NA	Intergenic	RMER16A2|LTR|ERVK	-6011	NM_028597	73666	Mm.292487	NM_028597	ENSMUSG00000025872	Thoc3	2410044K02Rik|AL033344	THO complex 3	protein-coding	nan	1.136	0.612	0.344	0.188	0.133	0.324	0.706	0.274	0.367	0.160	0.144	0.333	nan	0.408	nan	0.433	nan	9.531	6.740	5.387	7.503	11.174	9.298	nan
6223	chr16	92903616	92907701	+	0	NA	Intergenic	RCHARR1|DNA|hAT-Charlie	-79584	NM_001111022	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	3.975	nan	0.333	1.633	1.587	0.691	4.167	4.230	4.070	3.792	7.463	3.030	5.662	4.971	5.149	5.819	2.787	5.252	1.311	0.418	0.180	nan	0.851	0.452	5.078
4355	chr13	103414548	103416550	+	0	NA	Intergenic	Intergenic	-81057	NM_175171	328329	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	4.398	1.873	0.661	6.881	1.384	0.787	1.615	5.275	3.923	4.723	5.127	1.736	3.264	5.980	2.490	3.024	1.057	6.479	0.579	0.611	0.368	nan	0.517	0.192	2.351
6713	chr17	48126002	48127748	+	0	NA	3' UTR (NM_177824, exon 3 of 3)	3' UTR (NM_177824, exon 3 of 3)	19432	NM_001177897	328829	Mm.466999	NM_177824	ENSMUSG00000073386	9830107B12Rik	Trem5	RIKEN cDNA 9830107B12 gene	protein-coding	2.634	1.430	1.398	1.834	3.283	1.837	5.957	3.956	2.303	3.564	1.077	2.103	2.583	4.042	3.254	5.070	nan	2.553	5.506	5.867	5.292	3.061	8.085	7.434	3.517
8953	chr2	163896002	163897469	+	0	NA	intron (NM_183023, intron 1 of 5)	B1F1|SINE|Alu	21948	NM_183023	241770	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	8.753	14.161	5.326	10.356	5.963	5.063	8.739	9.941	4.960	10.327	5.798	2.598	6.141	9.826	7.346	10.573	8.077	7.585	nan	3.320	5.633	5.503	4.305	7.327	15.723
10226	chr4	82949199	82957702	+	0	NA	intron (NM_177863, intron 22 of 35)	RSINE1|SINE|B4	67652	NM_177863	329872	Mm.242337	NM_177863	ENSMUSG00000059049	Frem1	BC037594|D430009N09|D630008K06|crf11|eye<m02Jus>|eyes2|heb|qbrick	Fras1 related extracellular matrix protein 1	protein-coding	6.316	2.153	1.535	5.705	7.381	5.124	4.395	6.807	6.707	6.461	4.893	4.036	6.876	8.824	6.100	6.208	4.115	6.933	nan	4.264	3.059	6.802	4.203	3.930	5.490
8467	chr2	98502376	98507515	+	0	NA	Intergenic	Intergenic	1037288	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	nan	28.732	70.998	37.457	51.660	66.639	37.873	30.957	37.565	34.405	42.993	51.603	29.429	26.994	23.654	16.080	39.676	23.177	33.962	49.431	76.165	24.359	49.786	60.304	nan
6365	chr17	17759112	17763228	+	0	NA	Intergenic	Lx|LINE|L1	57229	NM_001104539	626942	Mm.404019	NM_001104539	ENSMUSG00000092120	Vmn2r90	EG626942	vomeronasal 2, receptor 90	protein-coding	8.238	16.888	7.306	8.255	4.035	2.794	7.319	6.650	4.700	8.066	4.875	2.696	5.929	8.468	7.047	8.958	6.225	7.327	5.060	3.144	3.515	4.364	3.131	3.245	nan
8150	chr2	32919718	32923433	+	0	NA	intron (NM_146119, intron 9 of 13)	B1_Mus1|SINE|Alu	39680	NM_199302	227738	Mm.248037	NM_199302	ENSMUSG00000026792	Lrsam1	-	leucine rich repeat and sterile alpha motif containing 1	protein-coding	0.537	0.590	0.414	1.878	0.535	0.296	0.446	0.385	nan	0.632	0.454	0.326	0.223	0.493	0.527	0.911	0.457	1.083	0.937	1.626	0.727	3.846	0.622	0.607	0.746
10747	chr4	137416338	137419730	+	0	NA	Intergenic	ORR1C2|LTR|ERVL-MaLR	-8243	NM_001126318	242711	Mm.475541	NM_001126318	ENSMUSG00000078520	Cela3a	Gm13011|OTTMUSG00000009877	chymotrypsin-like elastase family, member 3A	protein-coding	5.115	5.444	2.416	5.596	4.630	3.135	7.434	5.975	3.777	6.834	6.798	3.085	5.622	9.058	5.555	7.578	4.490	4.932	5.047	4.338	4.242	5.702	7.460	6.762	10.522
9653	chr3	105489056	105491448	+	0	NA	intron (NM_001039347, intron 2 of 6)	intron (NM_001039347, intron 2 of 6)	31436	NM_019931	56543	Mm.44530	NM_019931	ENSMUSG00000040896	Kcnd3	AW045978|Kncd3|Kv4.3	potassium voltage-gated channel, Shal-related family, member 3	protein-coding	7.126	7.040	3.412	7.682	5.667	2.991	6.317	4.647	4.431	8.865	4.552	2.659	7.090	7.874	6.870	7.041	5.644	6.340	2.843	2.291	2.120	3.809	2.799	2.793	10.438
698	chr1	138420983	138422761	+	0	NA	Intergenic	MER103C|DNA|hAT-Charlie	148134	NM_177397	338375	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	6.420	0.768	0.570	nan	1.912	0.720	3.843	2.468	2.617	2.975	0.774	0.648	4.536	5.301	4.329	9.380	7.554	3.803	0.977	0.800	0.372	0.561	0.493	0.579	5.813
15476	chr9	107209536	107211847	+	0	NA	intron (NM_153413, intron 1 of 52)	L1Md_T|LINE|L1	17884	NR_102273	100417434		NR_102273	ENSMUSG00000092125	AA543401	Mycs-like	myc-like oncogene, s-myc protein pseudogene	pseudo	6.467	3.020	0.862	4.353	1.906	0.970	4.235	5.141	nan	4.776	2.935	1.014	3.792	7.301	5.512	nan	3.024	5.641	0.906	0.679	0.650	1.224	0.686	0.434	13.339
7122	chr18	35113143	35115489	+	0	NA	Intergenic	Intergenic	-4596	NM_009818	12385	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	14.230	17.492	6.778	14.339	7.303	4.220	12.915	14.926	10.238	15.171	11.522	6.688	14.968	16.619	13.865	14.338	10.267	14.971	8.557	4.076	3.794	10.528	4.602	4.998	20.290
6226	chr16	93190299	93193757	+	0	NA	Intergenic	Intergenic	161161	NR_040486	69857	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	6.733	0.756	0.798	2.086	2.846	1.807	1.678	2.181	nan	2.976	2.224	0.920	1.883	3.139	2.314	2.132	2.258	nan	nan	1.223	0.767	0.603	0.512	0.241	3.311
524	chr1	121438432	121440444	+	0	NA	intron (NM_001025156, intron 3 of 23)	MTC|LTR|ERVL-MaLR	8371	NM_001025156	70829	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	5.278	0.587	0.322	1.407	1.815	0.656	4.433	1.821	1.135	1.966	0.620	0.837	3.844	3.261	2.804	6.649	3.520	3.493	0.441	0.488	0.426	0.697	0.249	0.236	4.677
9185	chr3	27352208	27355689	+	0	NA	Intergenic	(TCTA)n|Simple_repeat|Simple_repeat	-17403	NM_177330	208188	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|Ghsr1a	growth hormone secretagogue receptor	protein-coding	3.330	1.444	0.546	2.988	1.984	1.127	5.538	3.719	3.930	4.697	1.718	2.190	5.247	6.354	4.667	5.898	2.676	5.371	0.905	0.445	0.342	1.044	0.344	0.260	4.417
2176	chr11	51911433	51914273	+	0	NA	Intergenic	Intergenic	-54778	NM_029976	52626	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	8.621	15.517	4.014	13.877	7.577	6.020	7.345	9.443	6.112	15.485	7.530	4.473	7.898	10.014	11.423	11.827	5.929	11.702	6.767	2.638	3.595	8.882	nan	5.283	13.994
10928	chr4	150096809	150101101	+	0	NA	exon (NM_177366, exon 2 of 4)	exon (NM_177366, exon 2 of 4)	11452	NM_177366	269604	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	6.396	nan	0.395	5.751	7.289	4.943	6.314	8.218	6.525	8.307	4.380	4.245	6.764	10.048	7.357	8.395	4.246	8.258	3.207	1.374	1.035	5.952	1.486	1.179	9.212
9689	chr3	108002931	108006325	+	0	NA	Intergenic	Lx7|LINE|L1	13345	NM_010358	14862	Mm.37199	NM_010358	ENSMUSG00000058135	Gstm1	Gstb-1|Gstb1	glutathione S-transferase, mu 1	protein-coding	5.738	6.911	2.438	6.473	3.366	1.518	5.459	4.968	3.296	4.670	4.027	2.858	5.902	7.494	6.470	6.400	4.996	6.137	4.159	2.720	2.274	5.922	3.337	2.584	7.829
7235	chr18	53404144	53417422	+	0	NA	intron (NM_008908, intron 3 of 4)	intron (NM_008908, intron 3 of 4)	7224	NM_008908	19038	Mm.4587	NM_008908	ENSMUSG00000024538	Ppic	CyP-20c	peptidylprolyl isomerase C	protein-coding	8.655	nan	0.869	nan	4.534	2.858	6.511	7.017	4.981	6.143	4.599	3.701	nan	7.577	6.973	7.809	6.498	nan	nan	1.431	1.455	nan	1.364	1.319	nan
2714	chr11	97002704	97004830	+	0	NA	Intergenic	Intergenic	-9802	NM_031183	83395	Mm.156282	NM_031183	ENSMUSG00000038560	Sp6	1110025J03Rik|AA591031|AI592962|Epfn|Klf14	trans-acting transcription factor 6	protein-coding	7.606	10.986	4.346	7.336	3.959	2.365	4.363	8.541	4.905	5.629	5.827	2.594	5.126	5.924	6.069	7.607	5.890	6.635	1.220	nan	1.838	0.832	nan	nan	7.838
15868	chrX	163449487	163452415	+	0	NA	Intergenic	Arthur1B|DNA|hAT-Tip100	-98387	NR_038088	100568459		NR_038088		Bc1	Gm24367	brain cytoplasmic RNA 1	ncRNA	3.489	1.235	0.686	2.128	3.915	2.039	3.484	5.268	3.369	4.544	2.148	1.397	3.620	4.983	3.533	4.263	3.366	4.354	1.654	1.585	0.921	1.566	1.431	1.491	3.067
10978	chr4	154301818	154303636	+	0	NA	Intergenic	Lx6|LINE|L1	-2832	NM_001112744	230972	Mm.38481	NM_001112744	ENSMUSG00000029032	Arhgef16	-	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding	9.469	21.878	7.705	8.362	3.812	2.931	3.676	4.792	4.827	6.398	4.673	2.610	3.774	5.211	5.558	6.793	3.362	6.974	4.726	3.691	1.938	2.798	5.294	3.326	8.092
4380	chr13	108634050	108640610	+	0	NA	Intergenic	ID4|SINE|ID	-16847	NM_011056	238871	Mm.434429	NM_011056	ENSMUSG00000021699	Pde4d	9630011N22Rik|Dpde3	phosphodiesterase 4D, cAMP specific	protein-coding	nan	nan	0.353	3.254	1.427	0.623	2.712	2.693	3.842	3.684	5.132	2.886	4.070	4.492	3.948	5.049	2.523	4.881	5.701	2.234	0.938	7.237	2.591	1.612	4.398
10904	chr4	149194124	149197138	+	0	NA	intron (NM_207682, intron 36 of 46)	intron (NM_207682, intron 36 of 46)	-28924	NM_001081274	110208	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	2.944	nan	0.737	5.704	6.859	4.694	2.005	3.760	2.619	3.228	1.958	1.258	2.451	6.102	2.939	2.449	0.879	4.364	1.692	0.960	1.454	4.502	2.769	2.568	3.064
3418	chr12	72985824	72989434	+	0	NA	Intergenic	(GGGAGA)n|Simple_repeat|Simple_repeat	47747	NM_011384	20476	Mm.57138	NM_011384	ENSMUSG00000021099	Six6	Optx2|Six9	sine oculis-related homeobox 6	protein-coding	5.392	2.348	0.999	6.320	2.371	0.547	1.395	2.988	4.384	5.431	5.238	2.151	3.119	4.933	2.972	5.096	1.958	5.446	1.543	0.670	0.475	1.913	0.867	0.368	6.660
598	chr1	133020994	133023147	+	0	NA	intron (NM_008575, intron 1 of 11)	B1_Mus2|SINE|Alu	3346	NR_126506	17248	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	2.249	0.483	0.570	nan	3.558	2.733	3.179	3.835	2.260	2.529	1.918	1.182	3.899	4.733	3.200	nan	3.339	3.426	0.849	0.686	0.398	1.131	0.564	0.367	nan
8498	chr2	103163441	103168369	+	0	NA	Intergenic	MIRb|SINE|MIR	92230	NM_019735	56369	Mm.24772	NM_019735	ENSMUSG00000010911	Apip	APIP2|CGI-29|Mmrp19	APAF1 interacting protein	protein-coding	6.336	0.777	0.345	2.953	1.730	0.475	7.211	8.411	5.111	5.503	9.435	4.171	8.333	7.525	7.878	10.299	7.245	6.408	1.998	0.791	0.462	nan	2.121	1.247	9.743
780	chr1	158601288	158609780	+	0	NA	intron (NM_007495, intron 14 of 22)	MER89|LTR|ERV1	99909	NR_030441	735253		NR_030441	ENSMUSG00000070103	Mir488	Mirn488|mir-488|mmu-mir-488	microRNA 488	ncRNA	5.669	5.087	2.594	4.263	4.837	3.265	2.989	4.441	nan	4.679	4.282	2.725	4.363	5.583	4.452	nan	4.881	5.748	nan	1.792	1.685	1.820	nan	3.131	4.934
13236	chr7	63273375	63275350	+	0	NA	Intergenic	L1Md_T|LINE|L1	-61836	NM_007390	11441	Mm.113464	NM_007390	ENSMUSG00000030525	Chrna7	Acra7|alpha7|nAchR	cholinergic receptor, nicotinic, alpha polypeptide 7	protein-coding	5.927	2.396	1.100	7.380	3.021	1.627	3.968	4.025	3.782	7.621	2.216	2.302	3.613	4.802	6.485	6.803	4.596	7.010	2.184	1.808	1.222	2.436	1.641	1.982	9.943
7470	chr19	4036038	4039718	+	0	NA	promoter-TSS (NM_013541)	promoter-TSS (NM_013541)	34	NM_013541	14870	Mm.299292	NM_013541	ENSMUSG00000060803	Gstp1	GstpiB	glutathione S-transferase, pi 1	protein-coding	4.641	5.351	2.354	4.313	4.325	3.261	5.585	9.752	nan	4.264	3.631	2.560	4.073	7.070	4.425	nan	5.626	4.641	1.469	1.518	1.989	2.323	2.683	2.862	5.660
3547	chr12	85198702	85200969	+	0	NA	Intergenic	Intergenic	-19646	NM_145445	217715	Mm.29041	NM_145445	ENSMUSG00000004788	Eif2b2	EIF-2Bbeta|EIF2B	eukaryotic translation initiation factor 2B, subunit 2 beta	protein-coding	6.759	1.921	1.335	2.385	3.580	2.933	3.910	1.969	2.237	2.711	1.370	0.482	4.979	6.286	2.489	4.967	6.197	4.034	0.512	1.113	1.086	0.581	0.986	1.224	5.275
5331	chr15	74823083	74828812	+	0	NA	Intergenic	MMETn-int|LTR|ERVK	6871	NM_010416	15202	Mm.17336	NM_010416	ENSMUSG00000068600	Gml2	1700057K19Rik|HemT|Hemt1	glycosylphosphatidylinositol anchored molecule like 2	protein-coding	nan	nan	3.033	nan	3.470	2.089	nan	6.804	3.617	nan	nan	4.640	3.282	nan	3.622	2.680	nan	4.185	0.791	1.349	0.616	nan	0.642	0.407	2.639
3490	chr12	80685397	80691947	+	0	NA	intron (NR_037995, intron 1 of 1)	B3|SINE|B2	3794	NR_037995	68354	Mm.46194	NR_037995		Plekhd1os	0610009B14Rik	pleckstrin homology domain containing, family D (with coiled-coil domains) member 1, opposite strand	ncRNA	6.478	0.867	0.695	3.805	4.407	2.656	7.997	3.960	7.473	7.925	2.482	1.535	10.777	8.111	7.208	6.816	8.242	6.405	0.810	0.855	0.817	0.700	0.697	0.409	6.627
240	chr1	63222613	63224762	+	0	NA	intron (NM_001285937, intron 2 of 5)	intron (NM_001285937, intron 2 of 5)	-9406	NM_146250	241070	Mm.103354	NM_146250	ENSMUSG00000046856	Gpr1	-	G protein-coupled receptor 1	protein-coding	10.826	14.884	4.480	10.995	3.534	2.119	8.693	7.895	7.029	9.957	7.621	4.388	9.171	8.162	10.302	15.452	6.930	9.577	5.768	2.468	1.939	7.543	3.135	2.393	15.210
11726	chr5	125005985	125007726	+	0	NA	intron (NM_028443, intron 1 of 2)	RMER17C2|LTR|ERVK	3380	NM_028443	73121	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	0.342	0.597	0.355	0.330	0.312	0.299	0.762	0.416	0.400	nan	0.337	0.483	0.138	0.462	nan	0.525	nan	nan	6.040	5.790	4.673	4.539	nan	6.334	nan
5462	chr15	81019419	81022150	+	0	NA	exon (NM_153049, exon 6 of 13)	exon (NM_153049, exon 6 of 13)	43019	NM_134091	105835	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	7.307	6.584	2.612	6.617	3.078	2.434	8.603	10.975	4.491	5.858	6.233	2.996	8.322	6.835	7.894	7.034	6.274	7.949	4.218	1.568	2.086	4.757	3.019	3.247	9.987
2209	chr11	54250659	54254086	+	0	NA	Intergenic	Intergenic	-2473	NM_009969	12981	Mm.4922	NM_009969	ENSMUSG00000018916	Csf2	Csfgm|GMCSF|Gm-CSf|MGI-IGM	colony stimulating factor 2 (granulocyte-macrophage)	protein-coding	8.352	7.148	2.871	7.546	5.777	3.425	4.156	5.295	4.911	8.535	3.403	2.337	5.579	6.206	6.073	8.024	6.014	7.280	nan	3.485	3.556	4.681	3.928	3.784	nan
230	chr1	60830707	60832994	+	0	NA	Intergenic	L1_Mur3|LINE|L1	-77175	NM_009843	12477	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	6.768	3.180	1.359	2.256	2.299	2.349	9.710	6.515	4.180	3.935	2.090	2.246	9.298	7.316	8.172	10.782	7.209	4.472	1.351	0.903	0.809	1.283	0.791	0.719	6.600
12609	chr6	114840437	114846976	+	0	NA	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	78046	NM_177683	232334	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	7.459	4.008	1.302	8.524	4.182	2.112	3.848	6.814	5.631	5.976	5.384	1.853	4.073	6.017	5.744	8.890	5.182	7.643	1.873	1.819	1.721	2.567	nan	1.033	10.218
11618	chr5	117038785	117042325	+	0	NA	Intergenic	Intergenic	75438	NM_001122666	71954	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding	0.198	0.274	0.155	0.220	0.054	0.034	0.189	0.213	0.055	0.106	0.262	0.057	0.156	0.078	0.033	0.301	0.345	0.194	5.513	3.194	2.245	7.080	5.360	4.137	0.334
115	chr1	37773548	37777064	+	0	NA	intron (NM_001290720, intron 15 of 17)	IAPEY4_I-int|LTR|ERVK	-55495	NM_028096	72097	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	2.674	0.950	0.358	2.440	0.706	0.386	3.858	2.476	2.197	4.708	0.844	1.830	5.365	4.423	3.030	3.699	1.829	3.074	3.810	1.614	1.593	4.173	2.526	2.803	3.192
15799	chrX	103380791	103384378	+	0	NA	intron (NM_009767, intron 3 of 5)	intron (NM_009767, intron 3 of 5)	26108	NM_009767	12212	Mm.42223	NM_009767	ENSMUSG00000031327	Chic1	Brx|ENSMUSG00000073019|Gm10454	cysteine-rich hydrophobic domain 1	protein-coding	4.043	4.268	1.269	3.078	2.718	1.693	2.673	4.662	2.371	3.172	3.723	2.215	3.162	4.390	3.873	4.650	nan	3.745	3.300	1.414	0.846	3.032	1.087	0.664	4.114
13868	chr7	146596906	146605074	+	0	NA	Intergenic	Intergenic	1286155	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	nan	nan	0.587	2.959	1.428	0.932	1.399	1.034	nan	1.903	2.494	0.794	1.103	2.270	1.800	2.076	1.110	2.799	3.721	3.256	2.048	4.533	nan	2.553	2.694
2374	chr11	69494733	69501110	+	0	NA	exon (NM_001081330, exon 16 of 86)	exon (NM_001081330, exon 16 of 86)	51187	NM_001081330	327954	Mm.247478	NM_177617	ENSMUSG00000005237	Dnah2	2900022L05Rik|4930564A01|D130094J20|D330014H01Rik|Dnahc2|Dnhd3	dynein, axonemal, heavy chain 2	protein-coding	12.893	4.384	2.607	10.461	6.787	4.065	11.328	10.973	6.195	9.765	7.084	4.338	8.890	12.709	8.351	12.017	10.690	8.938	4.061	5.254	5.025	4.259	nan	3.629	12.944
15686	chrX	13037872	13040978	+	0	NA	Intergenic	Intergenic	-2590	NR_038158	70489	Mm.383563	NR_038158	ENSMUSG00000087424	5730405O15Rik	-	RIKEN cDNA 5730405O15 gene	ncRNA	5.674	3.020	1.131	5.291	4.920	2.716	2.939	4.310	4.203	5.298	4.863	1.922	3.415	5.444	4.244	nan	3.010	5.406	2.035	1.735	0.941	2.597	1.064	1.182	4.497
9400	chr3	84456309	84458021	+	0	NA	intron (NM_001033301, intron 5 of 11)	intron (NM_001033301, intron 5 of 11)	22326	NM_001205355	229474	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	2.472	1.845	1.404	1.834	2.507	1.177	2.258	2.217	1.639	1.279	2.115	2.297	1.200	2.945	1.914	1.307	2.410	1.515	5.071	3.951	2.139	4.637	6.829	5.500	1.484
5882	chr16	21271325	21275246	+	0	NA	intron (NR_046162, intron 3 of 4)	intron (NR_046162, intron 3 of 4)	-17219	NR_106145	102465781		NR_106145	ENSMUSG00000098400	Mir7680	Gm27417|mmu-mir-7680	microRNA 7680	ncRNA	0.780	1.206	0.375	0.893	0.525	0.280	0.830	1.377	1.421	nan	1.049	0.926	0.884	1.487	1.425	1.633	0.907	1.533	6.120	3.530	2.306	6.625	5.812	3.759	1.371
11030	chr5	17343467	17350957	+	0	NA	Intergenic	Intergenic	-128910	NM_027609	70935	Mm.332225	NM_027609	ENSMUSG00000058643	Speer4f1	4922502J04Rik|SPEER-4F|Speer4f	spermatogenesis associated glutamate (E)-rich protein 4F1	protein-coding	4.707	0.713	0.718	4.320	5.425	3.470	4.897	3.534	4.269	4.643	1.431	0.913	5.157	6.147	6.767	4.875	4.843	5.701	0.582	1.012	0.857	0.546	0.412	0.315	2.217
10103	chr4	56545520	56547817	+	0	NA	Intergenic	Intergenic	194757	NM_025271	11471	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Tact1	actin-like 7b	protein-coding	1.192	nan	0.199	0.175	0.249	0.218	nan	1.912	1.093	0.581	5.803	2.645	0.575	1.063	1.438	1.026	0.476	0.896	nan	0.448	0.182	1.357	0.326	0.134	1.420
7606	chr19	16275211	16276612	+	0	NA	intron (NM_008139, intron 2 of 6)	intron (NM_008139, intron 2 of 6)	39093	NR_105832	102465218		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	2.363	0.904	0.357	2.336	1.747	0.601	1.382	2.529	2.692	1.901	1.814	1.022	2.841	3.151	2.000	2.058	2.692	2.593	0.469	0.515	0.161	0.888	0.553	0.360	2.159
2319	chr11	62942253	62946882	+	0	NA	Intergenic	B1_Mur4|SINE|Alu	-6626	NM_025496	66338	Mm.46166	NM_025496	ENSMUSG00000042200	Cdrt4	1700019I23Rik	CMT1A duplicated region transcript 4	protein-coding	5.407	1.887	0.337	7.804	2.294	0.830	2.301	3.084	3.751	8.286	2.603	1.738	3.279	5.918	3.433	5.183	2.599	7.992	nan	1.232	1.216	4.815	1.108	0.832	6.895
9994	chr4	40775381	40777784	+	0	NA	Intergenic	ORR1B2|LTR|ERVL-MaLR	-18697	NM_021535	74255	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	4.166	1.671	1.482	4.198	7.082	6.412	5.064	5.049	4.989	3.930	3.246	3.858	4.272	4.426	3.610	4.142	4.723	3.581	1.729	1.943	1.606	0.862	1.403	1.479	4.390
1072	chr10	4537760	4542851	+	0	NA	intron (NM_001195672, intron 6 of 10)	intron (NM_001195672, intron 6 of 10)	30433	NM_001195672	100504234	Mm.291807	NM_001195672	ENSMUSG00000019767	Ccdc170	Gm221	coiled-coil domain containing 170	protein-coding	6.816	4.984	2.421	2.852	1.580	1.151	4.506	3.559	3.359	4.193	2.752	2.083	4.743	4.422	4.156	4.592	6.853	4.512	3.914	1.959	1.335	3.298	3.130	2.757	5.327
9846	chr3	142056720	142059402	+	0	NA	intron (NM_001277217, intron 1 of 11)	intron (NM_001277217, intron 1 of 11)	-75797	NM_007560	12167	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	8.622	5.632	1.398	9.943	5.596	3.252	9.669	8.470	7.818	10.991	9.359	4.433	10.497	11.630	10.446	10.232	7.610	10.861	2.770	1.604	1.828	4.097	2.106	1.982	12.937
14662	chr8	121945292	121965236	+	0	NA	intron (NM_016812, intron 1 of 13)	intron (NM_016812, intron 1 of 13)	4772	NM_001285983	53325	Mm.287163	NM_016812	ENSMUSG00000025316	Banp	AA408158|SMAR1	BTG3 associated nuclear protein	protein-coding	7.762	4.261	1.286	6.252	5.173	2.922	5.884	11.055	4.363	6.087	6.842	3.241	8.852	10.246	7.700	nan	5.281	7.100	1.282	1.707	1.664	4.087	0.921	0.909	11.269
6035	chr16	34344778	34346453	+	0	NA	intron (NM_001164268, intron 5 of 33)	intron (NM_001164268, intron 5 of 33)	168412	NM_001164268	545156	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	1.657	0.874	0.398	3.771	1.578	0.490	2.314	3.358	2.319	2.674	0.546	0.816	4.394	4.218	2.819	2.460	1.272	2.418	1.752	0.647	0.472	1.367	0.913	0.570	nan
1394	chr10	68647499	68649108	+	0	NA	Intergenic	Intergenic	-75443	NM_177794	327766	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	8.380	2.473	1.362	4.657	5.980	3.971	6.046	7.537	6.064	6.849	6.297	4.016	7.283	9.587	6.993	6.505	7.901	6.576	2.596	1.739	1.565	1.906	1.608	2.025	5.632
2772	chr11	100246397	100260531	+	0	NA	Intergenic	L2b|LINE|L2	-4562	NM_008470	16666	Mm.422799	NM_008470	ENSMUSG00000053797	Krt16	AI324768|CK-16|K16|Krt1-16	keratin 16	protein-coding	7.457	nan	0.549	9.028	5.762	3.799	7.010	8.572	5.134	6.668	6.813	3.655	6.948	9.044	7.944	9.829	6.190	8.279	6.018	nan	3.159	6.216	nan	nan	10.388
15451	chr9	103204153	103205571	+	0	NA	Intergenic	BGLII|LTR|ERVK	-2797	NM_009275	20818	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	3.362	1.132	0.595	1.514	0.865	0.377	2.733	2.558	nan	3.078	0.668	1.180	3.896	5.037	3.234	4.259	4.431	2.881	1.568	0.624	0.915	0.652	0.982	0.692	3.157
15236	chr9	66836207	66842732	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-4763	NM_026674	68318	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	2.268	1.806	0.962	1.497	1.624	0.925	3.889	1.470	1.937	2.177	2.504	1.549	3.647	4.449	nan	2.962	1.353	3.511	nan	1.045	0.592	0.518	0.452	0.395	4.774
8872	chr2	156241598	156244348	+	0	NA	intron (NM_172674, intron 2 of 17)	B1F|SINE|Alu	46326	NM_172674	228829	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	6.712	0.584	0.286	3.133	3.493	1.042	2.913	7.333	3.073	4.583	2.263	1.245	6.014	7.783	4.457	6.453	3.822	5.308	nan	0.497	0.312	0.814	0.252	0.187	6.316
4878	chr14	77281870	77283613	+	0	NA	intron (NM_001253759, intron 2 of 19)	B3|SINE|B2	125978	NM_172813	239188	Mm.441158	NM_172813	ENSMUSG00000022012	Enox1	B230207J08|D230005D02Rik	ecto-NOX disulfide-thiol exchanger 1	protein-coding	3.894	0.466	0.468	2.110	3.845	1.270	5.521	7.142	2.385	3.702	1.875	1.551	4.121	5.639	6.484	6.424	1.542	4.251	4.786	2.097	1.758	3.372	3.769	2.858	4.327
1277	chr10	44820097	44827582	+	0	NA	Intergenic	Lx6|LINE|L1	-243375	NM_011156	19072	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0.737	7.317	3.966	0.622	0.394	0.089	0.440	0.683	0.650	0.630	0.553	0.296	0.468	0.392	0.602	0.846	0.621	0.900	nan	1.084	0.695	2.041	0.891	0.833	0.670
11217	chr5	45884737	45888292	+	0	NA	Intergenic	Intergenic	-28974	NM_178142	209707	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding	7.714	3.917	1.284	6.889	3.568	2.021	5.174	4.275	5.377	6.539	1.888	1.738	5.655	5.680	7.364	8.384	4.214	8.628	1.770	1.344	1.437	2.683	1.235	0.965	8.714
7570	chr19	10408495	10419048	+	0	NA	intron (NM_173067, intron 2 of 9)	intron (NM_173067, intron 2 of 9)	24681	NM_173068	54525	Mm.182654	NM_018801	ENSMUSG00000024743	Syt7	AI851541|B230112P13Rik	synaptotagmin VII	protein-coding	0.384	0.631	0.189	0.406	0.240	0.117	0.589	0.841	nan	0.415	0.310	0.170	0.210	0.488	0.435	nan	0.549	0.773	2.147	2.004	1.432	7.744	2.617	1.699	0.759
15219	chr9	65957381	65958809	+	0	NA	intron (NM_173185, intron 2 of 13)	intron (NM_173185, intron 2 of 13)	49085	NM_173185	214897	Mm.325816	NM_173185	ENSMUSG00000032384	Csnk1g1	9130020E21Rik	casein kinase 1, gamma 1	protein-coding	3.074	1.726	1.691	2.525	1.708	0.742	1.633	1.657	3.186	2.976	0.463	1.174	2.469	3.521	1.719	2.814	1.988	2.731	nan	0.737	1.030	1.023	0.475	0.475	2.818
10786	chr4	138757803	138762475	+	0	NA	Intergenic	Intergenic	-2541	NM_012045	26971	Mm.331989	NM_012045	ENSMUSG00000028749	Pla2g2f	-	phospholipase A2, group IIF	protein-coding	2.668	4.536	2.474	4.316	6.407	5.164	2.858	1.768	nan	2.886	2.386	1.924	1.252	4.535	2.254	1.977	1.512	nan	0.972	1.297	0.674	1.114	nan	0.583	2.780
15731	chrX	53858275	53863608	+	0	NA	Intergenic	L1_Mus1|LINE|L1	-63235	NM_011725	22441	Mm.379041	NM_011725	ENSMUSG00000054626	Xlr	-	X-linked lymphocyte-regulated	protein-coding	5.678	1.805	0.944	3.234	3.149	1.106	3.486	4.263	3.596	5.169	2.573	1.470	5.146	6.097	3.074	4.676	3.485	4.569	1.936	1.506	0.808	1.593	1.650	0.844	5.327
10207	chr4	82006827	82009333	+	0	NA	Intergenic	L1Md_A|LINE|L1	-57300	NR_040659	545641	Mm.216028	NR_040659	ENSMUSG00000085022	Gm5860	EG545641	predicted gene 5860	ncRNA	3.257	1.017	0.572	4.217	2.663	2.785	1.254	1.247	2.366	1.827	1.834	2.175	1.008	1.865	1.672	1.817	1.490	2.735	nan	3.910	2.067	7.092	1.510	0.859	1.643
7597	chr19	15998223	16001246	+	0	NA	intron (NR_045355, intron 2 of 2)	B3|SINE|B2	14659	NR_045355	100502653	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	5.708	5.345	2.294	4.190	2.723	1.093	7.575	6.950	3.391	4.832	5.347	2.770	4.572	5.839	7.140	8.466	5.623	7.298	1.043	1.027	0.786	2.486	1.339	1.629	12.035
5889	chr16	21464474	21466927	+	0	NA	intron (NM_001285893, intron 13 of 46)	intron (NM_001285893, intron 13 of 46)	42582	NM_001285894	209018	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	3.483	0.601	0.303	1.036	1.352	0.403	3.081	2.161	0.897	nan	0.275	0.284	2.480	5.867	3.247	2.858	2.068	2.065	0.926	0.620	0.485	1.227	0.496	0.293	3.855
2562	chr11	85165765	85167423	+	0	NA	Intergenic	B2_Mm1t|SINE|B2	-4502	NM_028589	73634	Mm.48850	NM_028589	ENSMUSG00000018479	1700125H20Rik	-	RIKEN cDNA 1700125H20 gene	protein-coding	11.000	5.581	3.107	6.856	8.876	4.001	5.914	8.206	4.521	8.214	7.173	3.704	5.140	11.727	5.093	6.729	6.228	6.280	4.311	6.968	3.553	4.159	6.585	4.318	6.989
3951	chr13	34340717	34343831	+	0	NA	intron (NM_001033167, intron 1 of 10)	intron (NM_001033167, intron 1 of 10)	2908	NM_001033167	73102	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	3.001	nan	0.588	3.217	3.695	2.968	5.225	3.546	3.929	3.737	1.190	1.656	5.705	4.692	4.768	7.712	3.660	4.586	2.719	1.623	1.850	2.571	2.573	2.390	5.186
3094	chr11	119835402	119840932	+	0	NA	intron (NM_028898, intron 13 of 33)	intron (NM_028898, intron 13 of 33)	-3802	NR_045312	319454	Mm.442144	NR_045312	ENSMUSG00000085081	Rptoros	A430071A18Rik	regulatory associated protein of MTOR, complex 1, opposite strand	ncRNA	4.814	nan	0.494	4.135	4.622	3.618	6.504	7.579	4.972	5.790	4.532	3.415	6.623	8.433	7.253	7.695	5.279	5.751	2.095	nan	1.201	1.952	1.297	1.185	5.900
8900	chr2	157992565	157996296	+	0	NA	intron (NM_029282, intron 4 of 6)	intron (NM_029282, intron 4 of 6)	14930	NM_029282	75425	Mm.29068	NM_029282	ENSMUSG00000027650	Tti1	2610036D13Rik|AI449463	TELO2 interacting protein 1	protein-coding	4.914	4.001	1.018	4.428	5.952	2.724	2.610	5.233	nan	3.570	6.183	3.326	nan	4.329	2.494	3.733	3.101	nan	nan	1.369	0.763	1.477	1.686	0.755	4.876
14110	chr8	28146481	28151038	+	0	NA	Intergenic	Intergenic	-63906	NR_033590	666422	Mm.484413	NR_033590	ENSMUSG00000110372	Gm8096	EG666422	3-phosphoglycerate dehydrogenase pseudogene	pseudo	3.466	nan	0.516	0.781	0.799	0.339	2.681	5.504	2.456	1.756	3.411	1.824	5.102	4.899	4.047	3.876	3.247	2.589	0.508	0.310	0.274	nan	0.515	0.163	3.047
9813	chr3	132892295	132899059	+	0	NA	intron (NM_033525, intron 9 of 12)	intron (NM_033525, intron 9 of 12)	-17081	NR_102298	101243624	Mm.306256	NR_102297	ENSMUSG00000106230	Gm29811	-	predicted gene, 29811	ncRNA	5.373	0.579	0.499	3.765	3.906	2.055	7.459	7.115	4.082	4.734	0.584	1.286	9.592	8.770	8.826	8.061	7.940	7.464	5.261	1.634	1.148	1.836	4.390	3.258	7.311
9742	chr3	121253063	121257851	+	0	NA	intron (NM_178936, intron 1 of 7)	intron (NM_178936, intron 1 of 7)	7859	NM_178936	99887	Mm.26088	NM_178936	ENSMUSG00000028132	Tmem56	4930577M16Rik|AU018104|AW109744|C730036B01Rik	transmembrane protein 56	protein-coding	3.230	0.624	0.184	4.668	5.024	2.762	4.975	2.566	4.994	nan	2.186	2.374	5.237	8.093	4.003	nan	2.647	6.310	0.721	0.682	0.538	0.587	nan	0.488	nan
14302	chr8	73075251	73079409	+	0	NA	intron (NM_001317391, intron 6 of 15)	L1_Mus3|LINE|L1	60818	NR_039551	100628574		NR_039551	ENSMUSG00000093140	Mir28b	mmu-mir-28b	microRNA 28b	ncRNA	3.939	nan	0.626	4.799	1.657	1.000	nan	3.480	3.100	3.375	1.566	0.971	3.222	3.634	4.231	nan	2.348	5.438	2.995	1.319	0.963	7.616	1.171	0.908	7.172
12877	chr6	147706862	147710922	+	0	NA	Intergenic	Lx9|LINE|L1	18651	NR_033636	100039727	Mm.396220	NR_033636	ENSMUSG00000085077	1700049E15Rik	Gm15761|OTTMUSG00000026044	RIKEN cDNA 1700049E15 gene	ncRNA	3.289	0.588	0.315	nan	3.469	1.460	5.586	6.072	3.706	4.155	2.455	3.599	3.953	4.885	5.683	5.406	3.089	3.876	0.814	nan	0.582	nan	0.363	0.302	nan
9870	chr3	146534181	146542620	+	0	NA	Intergenic	Lx2B2|LINE|L1	-16977	NM_027371	70285	Mm.28128	NM_027332	ENSMUSG00000028187	Rpf1	2210420E24Rik|2310066N05Rik|Bxdc5	ribosome production factor 1 homolog	protein-coding	5.270	0.546	0.362	4.501	6.744	5.108	4.552	1.959	4.747	5.534	0.647	0.904	4.831	7.665	3.747	3.308	2.982	7.155	1.096	1.435	1.310	1.351	1.327	1.038	5.005
1865	chr10	127961334	127963991	+	0	NA	Intergenic	Intergenic	44846	NM_013786	27400	Mm.26719	NM_013786	ENSMUSG00000025396	Hsd17b6	17betaHSD9|Hsd17b9|Rdh8	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding	8.549	13.604	3.556	9.237	4.399	2.061	4.037	5.524	4.080	8.672	2.548	2.270	4.818	7.784	7.631	8.763	5.545	7.550	4.835	2.864	2.725	6.250	nan	3.429	13.043
8018	chr2	25117131	25125702	+	0	NA	Intergenic	L1MB5|LINE|L1	-26211	NM_172204	241275	Mm.218774	NM_172204	ENSMUSG00000036805	Noxa1	NY-CO-31|SDCCAG31	NADPH oxidase activator 1	protein-coding	6.021	3.118	0.802	3.922	1.548	1.170	5.491	10.376	nan	4.050	4.403	3.673	4.954	5.766	6.500	9.007	4.966	6.891	3.402	1.441	1.661	7.343	2.354	2.124	14.354
1783	chr10	117527215	117533366	+	0	NA	Intergenic	Lx5|LINE|L1	-99210	NM_027468	70574	Mm.339332	NM_027468	ENSMUSG00000020183	Cpm	1110060I01Rik|5730456K23Rik|AA589379|E030045M14Rik	carboxypeptidase M	protein-coding	1.317	12.102	8.120	1.520	1.062	0.552	0.546	0.642	0.693	1.065	0.475	0.391	0.287	0.404	0.630	0.894	0.623	nan	0.446	1.243	0.998	0.322	0.703	0.466	0.755
4642	chr14	47797297	47798953	+	0	NA	Intergenic	Intergenic	-100739	NR_045959	73961	Mm.390702	NR_045959		4930447J18Rik	4930425M13Rik	RIKEN cDNA 4930447J18 gene	ncRNA	4.700	1.735	0.756	3.807	2.114	0.687	2.882	4.539	4.650	4.476	2.850	2.992	3.870	4.831	4.158	4.123	2.383	4.043	5.173	2.354	0.835	4.482	2.952	1.839	6.768
4181	chr13	58221709	58232039	+	0	NA	Intergenic	RMER4B|LTR|ERVK	-11221	NM_026842	56085	Mm.182053	NM_026842	ENSMUSG00000005312	Ubqln1	1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1	ubiquilin 1	protein-coding	nan	8.352	2.637	6.509	4.029	3.174	5.404	7.778	3.856	8.969	4.529	3.169	5.224	nan	6.365	nan	3.136	nan	3.727	1.578	2.675	4.022	2.619	4.001	nan
12690	chr6	124667081	124674281	+	0	NA	intron (NM_145130, intron 1 of 12)	intron (NM_145130, intron 1 of 12)	7577	NM_145130	14792	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	8.305	nan	4.501	4.699	3.685	2.431	11.181	11.121	3.928	5.833	6.639	3.998	8.000	9.757	10.448	nan	8.322	7.539	6.794	4.304	4.180	8.726	4.908	4.717	13.452
12127	chr6	31233323	31239499	+	0	NA	intron (NR_040260, intron 1 of 5)	B4|SINE|B4	16060	NR_040261	73652	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	7.207	1.862	0.890	3.473	2.531	1.456	7.692	9.606	2.545	2.877	2.661	1.269	4.939	5.603	7.191	nan	6.726	nan	nan	0.658	0.380	1.010	0.602	0.555	7.172
4126	chr13	51940016	51952125	+	0	NA	Intergenic	Intergenic	99395	NM_011817	23882	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	nan	4.492	1.778	6.112	4.688	2.358	6.154	8.051	5.125	7.946	4.336	2.381	6.155	9.979	6.751	6.706	4.851	nan	4.254	nan	2.591	4.314	3.861	2.929	nan
12930	chr7	16824385	16832089	+	0	NA	intron (NM_133789, intron 5 of 17)	intron (NM_133789, intron 5 of 17)	-11505	NM_173430	243853	Mm.39703	NM_173430	ENSMUSG00000048920	Fkrp	A830029B19Rik|AI842067|AI847300|LGMD1I|MDC1C	fukutin related protein	protein-coding	8.189	3.448	2.619	3.809	3.960	2.247	4.487	7.614	3.720	5.516	3.482	1.531	3.757	5.191	3.956	5.897	4.818	4.716	1.210	1.931	1.864	1.093	0.668	0.727	8.287
9541	chr3	95621793	95624335	+	0	NA	Intergenic	(GGA)n|Simple_repeat|Simple_repeat	-1916	NM_019561	56205	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	14.597	19.164	9.159	15.385	11.360	9.639	16.956	12.524	10.881	15.773	nan	6.012	15.266	17.922	12.624	13.939	12.447	13.335	8.989	6.277	8.272	8.838	7.684	9.817	20.299
5090	chr15	27953938	27955677	+	0	NA	intron (NM_001081302, intron 1 of 56)	intron (NM_001081302, intron 1 of 56)	71041	NM_001081302	223435	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	9.196	4.397	0.415	10.741	3.570	3.750	12.091	13.689	4.641	20.241	7.311	3.555	10.648	9.925	12.183	10.771	7.653	11.100	8.046	2.225	6.116	9.518	4.008	9.644	24.069
3800	chr12	118906597	118908473	+	0	NA	exon (NM_029961, exon 17 of 28)	exon (NM_029961, exon 17 of 28)	58886	NM_029961	77706	Mm.261496	NM_029961	ENSMUSG00000072791	Abcb5	9230106F14Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding	4.421	0.913	0.991	3.322	2.978	1.329	5.573	2.982	2.764	4.023	4.295	2.954	3.297	2.916	3.736	5.568	2.521	5.273	0.941	1.211	0.523	1.013	0.744	0.456	3.924
14428	chr8	88055044	88059102	+	0	NA	Intergenic	Intergenic	-61686	NM_029074	382030	Mm.216574	NM_029074	ENSMUSG00000036810	Cnep1r1	5033428A16Rik|NEP1-R1|Tmem188	CTD nuclear envelope phosphatase 1 regulatory subunit 1	protein-coding	5.644	1.070	0.638	2.859	3.703	2.612	3.136	4.355	4.633	5.973	2.862	1.206	6.658	7.318	4.350	8.128	4.782	6.386	nan	1.703	1.124	2.208	0.989	0.817	6.435
6538	chr17	31983440	31986740	+	0	NA	intron (NM_028902, intron 7 of 7)	LTR40b|LTR|ERVL	49418	NM_028902	74377	Mm.75856	NM_028902	ENSMUSG00000002076	Hsf2bp	4932437G14Rik	heat shock transcription factor 2 binding protein	protein-coding	1.430	2.348	0.699	2.931	1.877	0.646	1.471	1.797	2.088	3.293	7.677	2.600	1.033	1.969	1.697	1.711	1.029	1.922	0.636	0.693	0.991	1.213	0.462	0.382	2.386
13626	chr7	119785633	119793112	+	0	NA	intron (NM_027698, intron 5 of 8)	intron (NM_027698, intron 5 of 8)	4686	NM_027698	71151	Mm.274160	NM_027698	ENSMUSG00000030929	Eri2	4933424N09Rik|Exod1|mKIAA1504	exoribonuclease 2	protein-coding	3.784	0.533	0.420	2.682	5.880	4.623	4.405	6.696	3.891	4.380	1.735	2.074	5.710	nan	3.987	3.909	4.758	3.458	1.887	1.275	1.460	2.240	1.110	1.379	2.378
11120	chr5	31898006	31905837	+	0	NA	intron (NM_144541, intron 7 of 11)	intron (NM_144541, intron 7 of 11)	203871	NM_144541	107976	Mm.482126	NM_144541	ENSMUSG00000052139	Bre	6030405P19Rik|AI429776|B830038C02Rik	brain and reproductive organ-expressed protein	protein-coding	7.549	3.686	1.194	6.585	4.448	3.055	8.571	7.617	6.870	6.789	6.700	5.058	6.580	9.555	9.739	9.625	6.793	9.206	2.614	1.302	1.552	1.973	2.078	1.609	7.844
8616	chr2	124465726	124467135	+	0	NA	intron (NM_001290997, intron 4 of 20)	intron (NM_001290997, intron 4 of 20)	-143866	NM_199238	214968	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	2.715	0.747	0.350	1.839	1.534	0.649	2.385	2.581	0.420	0.731	1.430	1.487	2.262	3.390	1.110	nan	1.165	1.079	nan	0.409	0.347	0.865	0.341	0.202	1.443
8988	chr2	165698175	165702409	+	0	NA	intron (NM_001271962, intron 5 of 15)	intron (NM_001271962, intron 5 of 15)	44994	NM_010165	14049	Mm.282719	NM_010165	ENSMUSG00000017897	Eya2	Eab1	EYA transcriptional coactivator and phosphatase 2	protein-coding	6.866	3.987	2.181	9.441	4.772	3.058	4.162	6.330	3.607	4.526	9.235	2.748	4.037	6.400	4.911	6.170	4.827	5.120	nan	3.174	2.384	1.876	2.815	2.713	7.357
10682	chr4	134316898	134324340	+	0	NA	intron (NM_001039048, intron 3 of 8)	B2_Mm1t|SINE|B2	5499	NM_001039048	433766	Mm.331961	NM_001039048	ENSMUSG00000028834	Trim63	MuRF1|RF1|Rnf28	tripartite motif-containing 63	protein-coding	6.308	4.204	1.507	6.670	3.984	2.322	7.155	7.755	4.599	6.233	6.426	3.999	5.378	7.651	5.667	6.951	3.164	5.430	2.903	2.085	2.240	3.257	nan	2.119	7.799
8839	chr2	154010325	154012830	+	0	NA	intron (NM_008953, intron 5 of 8)	intron (NM_008953, intron 5 of 8)	3301	NM_008953	19194	Mm.29197	NM_008953	ENSMUSG00000042459	Bpifa2	Bpifa2e|Psp	BPI fold containing family A, member 2	protein-coding	8.684	0.854	0.694	3.770	7.226	4.904	6.303	8.332	nan	5.168	5.346	1.493	6.614	6.831	7.950	8.946	7.877	6.560	4.296	2.611	2.290	0.364	2.285	2.726	8.490
4584	chr14	32049555	32051668	+	0	NA	intron (NM_030166, intron 6 of 9)	intron (NM_030166, intron 6 of 9)	21508	NM_030166	78754	Mm.40681	NM_030166	ENSMUSG00000021903	Galnt15	4631401E18Rik|Galntl2|mpp-GalNAc-T15	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 15	protein-coding	4.415	0.723	0.586	3.101	2.744	1.835	1.838	3.283	3.279	3.838	0.490	0.507	3.027	8.116	3.817	4.022	nan	3.105	0.794	0.574	0.635	nan	0.220	0.443	5.960
15656	chrX	7234752	7236196	+	0	NA	intron (NM_001243762, intron 2 of 13)	intron (NM_001243762, intron 2 of 13)	2300	NR_030495	723974		NR_030495	ENSMUSG00000070108	Mir500	Mirn500|mir-500|mmu-mir-500	microRNA 500	ncRNA	6.005	2.444	0.628	4.486	2.617	0.838	5.004	6.081	3.291	4.019	5.531	2.576	4.362	6.937	4.998	6.959	4.152	4.120	1.329	1.438	0.993	2.371	2.117	1.738	6.965
1036	chr1	193516806	193518151	+	0	NA	Intergenic	Intergenic	-9948	NR_029592	387201		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	7.578	0.715	0.426	2.849	2.285	1.204	5.503	5.980	2.613	3.683	1.140	0.798	4.254	5.761	5.156	7.016	5.165	3.840	0.846	0.482	0.417	0.950	nan	0.423	3.649
13605	chr7	118920707	118924850	+	0	NA	intron (NM_001081446, intron 7 of 8)	intron (NM_001081446, intron 7 of 8)	-66780	NM_023197	66356	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	3.406	1.315	0.183	6.306	0.992	0.442	1.499	2.721	2.633	3.671	4.041	2.087	1.799	3.373	4.883	3.841	1.275	4.707	3.399	1.015	1.272	2.792	1.174	0.716	4.865
10116	chr4	57287887	57297521	+	0	NA	intron (NM_011207, intron 1 of 25)	intron (NM_011207, intron 1 of 25)	9133	NM_011207	545622	Mm.246552	NM_011207	ENSMUSG00000038764	Ptpn3	9530011I20Rik|PTP-H1|PTPCL	protein tyrosine phosphatase, non-receptor type 3	protein-coding	3.819	nan	0.582	2.296	2.782	1.352	6.043	5.793	2.827	2.592	1.236	3.470	5.073	6.127	5.332	5.569	3.589	4.070	nan	1.101	0.956	2.905	1.766	1.374	5.498
9298	chr3	52070576	52074666	+	0	NA	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	32385	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding	8.655	15.379	3.807	12.762	4.527	3.278	10.361	9.640	6.304	16.122	5.002	4.076	10.915	11.694	10.521	10.512	7.134	9.919	4.593	2.074	2.967	4.297	4.108	5.194	16.672
3492	chr12	80724549	80732768	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	32057	NM_001008423	380768	Mm.29367	NM_001008423	ENSMUSG00000062961	Ccdc177	Gm1568	coiled-coil domain containing 177	protein-coding	4.140	9.383	5.856	2.344	1.356	0.693	1.886	2.283	2.579	2.415	1.387	1.310	2.019	nan	2.403	4.026	3.389	3.282	1.302	1.326	1.009	1.432	0.914	0.831	2.253
15844	chrX	148450248	148452892	+	0	NA	intron (NM_011022, intron 4 of 6).3	ID_B1|SINE|B4	-37379	NM_001082966	100034729	Mm.422946	NM_001082966	ENSMUSG00000079395	Gm15114	OTTMUSG00000019010|Ott-like	predicted gene 15114	protein-coding	5.412	5.134	2.207	3.987	2.783	1.992	3.736	3.624	2.193	4.213	2.974	1.354	3.253	5.127	3.338	4.298	3.306	3.228	2.403	2.615	1.246	2.241	2.741	2.032	5.398
1265	chr10	43457410	43472742	+	0	NA	TTS (NM_001168289)	TTS (NM_001168289)	-14064	NM_199028	331623	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	1.160	nan	5.990	1.279	0.571	0.297	0.716	1.257	0.863	0.695	1.013	0.642	0.387	0.515	1.065	1.061	0.654	1.012	nan	2.920	2.230	5.267	2.587	1.952	1.031
2065	chr11	32323247	32326151	+	0	NA	Intergenic	RMER17A2|LTR|ERVK	-23112	NM_177364	268396	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	2.092	0.802	0.405	nan	1.036	0.537	2.820	1.026	1.003	1.967	0.694	0.514	2.312	3.140	2.466	3.897	nan	2.363	0.841	0.350	0.305	0.694	0.255	0.172	3.496
15757	chrX	82997537	82999076	+	0	NA	intron (NM_007868, intron 1 of 78)	intron (NM_007868, intron 1 of 78)	49436	NM_007868	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding	1.673	0.355	0.168	1.443	1.113	0.477	1.508	2.343	2.905	2.375	0.317	0.608	2.800	3.321	2.532	3.267	2.973	3.344	0.898	0.041	0.239	0.270	0.084	0.061	1.687
4150	chr13	54505325	54507369	+	0	NA	intron (NM_176987, intron 1 of 9)	L1_Mur3|LINE|L1	2542	NM_176987	319719	Mm.376151	NM_176987	ENSMUSG00000043183	Simc1	4732471D19Rik	SUMO-interacting motifs containing 1	protein-coding	nan	0.717	0.572	0.293	0.134	0.210	0.317	0.495	0.289	0.541	0.254	0.152	0.250	nan	0.355	nan	0.565	nan	4.447	7.730	5.640	4.851	6.518	5.877	nan
544	chr1	127455255	127458593	+	0	NA	intron (NM_145128, intron 13 of 17)	intron (NM_145128, intron 13 of 17)	221097	NM_028135	72160	Mm.281287	NM_028135	ENSMUSG00000026347	Tmem163	2610024A01Rik|SV31	transmembrane protein 163	protein-coding	12.797	nan	1.816	7.975	5.803	3.354	9.060	9.742	6.119	9.635	8.603	4.358	10.220	10.120	8.916	14.729	9.417	9.219	nan	2.217	2.164	4.756	3.334	2.763	12.002
8832	chr2	153349687	153356417	+	0	NA	intron (NM_001039939, intron 2 of 11)	intron (NM_001039939, intron 2 of 11)	6913	NM_001039939	228790	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	nan	2.288	0.767	1.907	0.742	0.570	1.939	3.024	nan	nan	0.378	0.832	nan	nan	1.544	1.349	0.566	nan	3.678	2.328	3.446	5.271	2.296	4.240	nan
4696	chr14	56324248	56326614	+	0	NA	Intergenic	Intergenic	-39637	NM_138652	192113	Mm.273271	NM_138652	ENSMUSG00000022229	Atp12a	Atp1al1|HKalpha2|cHKA	ATPase, H+/K+ transporting, nongastric, alpha polypeptide	protein-coding	3.121	1.335	0.276	2.483	3.124	1.164	4.174	7.657	4.473	4.694	1.725	1.909	4.722	7.520	5.614	5.998	2.008	5.558	0.396	0.455	0.415	0.597	0.277	0.140	6.818
4370	chr13	105306529	105307541	+	0	NA	Intergenic	Intergenic	-14021	NM_027934	71816	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	4.272	nan	0.632	2.311	1.079	0.604	2.946	2.433	2.724	2.380	1.344	1.316	3.031	4.016	3.107	2.513	2.371	2.051	1.058	0.779	0.547	nan	0.676	0.656	2.668
14602	chr8	113239623	113246134	+	0	NA	Intergenic	Intergenic	175616	NR_033584	791378	Mm.350576	NR_033584	ENSMUSG00000110541	Gm10280	ENSMUSG00000069883	predicted gene 10280	ncRNA	2.015	1.741	0.342	3.207	0.914	0.453	1.246	1.073	1.066	2.265	1.015	0.448	1.012	1.516	1.581	nan	1.326	1.805	1.770	1.489	1.877	5.928	0.929	1.183	2.849
4527	chr14	22649573	22651117	+	0	NA	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-107547	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	14.152	19.987	6.914	17.973	8.089	8.141	11.283	14.737	11.030	18.598	12.194	7.316	12.930	14.289	15.470	15.185	8.159	12.642	7.519	3.663	8.073	9.547	5.951	7.804	23.866
9331	chr3	58175552	58177413	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-12675	NR_040538	67850	Mm.416968	NR_040538	ENSMUSG00000100666	1700007F19Rik	-	RIKEN cDNA 1700007F19 gene	ncRNA	5.888	1.875	0.804	6.678	6.079	2.290	3.882	5.635	3.919	3.262	3.855	1.976	4.639	6.380	6.757	5.698	2.422	8.824	1.604	0.683	0.329	1.725	0.457	0.483	7.137
4634	chr14	46998051	47011870	+	0	NA	intron (NM_001163433, intron 1 of 11)	intron (NM_001163433, intron 1 of 11)	3620	NM_001163433	74480	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	6.529	0.779	0.411	4.863	3.703	1.808	10.733	10.901	4.324	6.790	0.769	1.013	6.968	10.429	9.622	9.587	6.042	7.028	0.477	1.499	1.192	0.976	0.627	0.538	12.538
1196	chr10	26093402	26095662	+	0	NA	Intergenic	Intergenic	-15480	NM_029881	77220	Mm.266260	NM_029881	ENSMUSG00000049420	Tmem200a	C030003D03Rik	transmembrane protein 200A	protein-coding	6.100	11.239	4.423	7.897	3.447	2.923	5.425	4.577	3.819	9.661	7.018	4.960	2.785	5.519	6.287	6.265	3.329	5.620	2.124	2.225	3.091	2.710	1.632	2.315	10.326
11978	chr5	149746129	149748911	+	0	NA	intron (NM_001081204, intron 12 of 14)	L1MEc|LINE|L1	64231	NR_077242	100861794	Mm.402054	NR_077242	ENSMUSG00000106740	Gm21221	-	predicted gene, 21221	ncRNA	3.114	0.826	0.450	nan	1.489	1.042	4.658	2.299	nan	2.996	2.866	0.942	2.886	5.728	3.236	nan	2.718	3.587	0.683	0.741	0.731	0.534	0.952	0.995	nan
8259	chr2	58642032	58645408	+	0	NA	intron (NM_001289660, intron 1 of 7)	intron (NM_001289660, intron 1 of 7)	76386	NM_001289660	76654	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	4.079	0.633	0.487	0.897	0.368	0.196	3.106	nan	2.466	2.513	1.118	0.338	4.382	2.022	3.655	6.164	5.479	3.198	0.901	0.681	0.237	0.836	1.018	0.617	7.435
7927	chr2	4465993	4470055	+	0	NA	intron (NM_001347086, intron 3 of 24)	L1MB4|LINE|L1	67048	NM_001177843	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	nan	0.677	0.380	1.206	0.493	0.218	0.284	0.531	0.832	0.889	0.419	0.216	0.664	0.706	0.839	1.219	0.803	1.412	3.898	1.191	0.570	4.345	1.870	1.000	1.286
7050	chr18	20345977	20350378	+	0	NA	Intergenic	Intergenic	-28552	NM_181682	225256	Mm.269128	NM_181682	ENSMUSG00000061928	Dsg1b	Dsg5|dsg1-beta	desmoglein 1 beta	protein-coding	3.821	0.493	0.443	0.533	0.263	0.125	6.163	5.380	0.877	0.712	7.290	1.994	6.253	4.229	4.646	2.707	4.668	2.070	1.089	0.955	0.692	1.357	0.802	0.414	2.863
11430	chr5	91706838	91715450	+	0	NA	Intergenic	Intergenic	56156	NR_045383	73452	Mm.396233	NR_045383	ENSMUSG00000101978	1700063O14Rik	-	RIKEN cDNA 1700063O14 gene	ncRNA	3.958	0.811	0.517	2.382	4.993	2.503	5.355	4.472	7.066	8.111	4.379	4.926	4.479	6.233	5.963	4.534	3.908	6.187	0.620	0.551	0.309	1.357	0.488	0.446	2.941
239	chr1	63182563	63185238	+	0	NA	exon (NM_146250, exon 3 of 3)	exon (NM_146250, exon 3 of 3)	4877	NR_028558	100217464	Mm.484706	NR_028558	ENSMUSG00000064602	Snora41	MBI-83	small nucleolar RNA, H/ACA box 41	snoRNA	3.147	1.074	0.618	1.103	1.688	1.040	2.160	3.940	2.113	1.986	1.815	2.861	2.714	nan	1.866	3.396	2.948	nan	6.016	4.237	3.936	5.787	8.493	7.525	1.221
14334	chr8	74657788	74662187	+	0	NA	Intergenic	Intergenic	-213187	NM_027837	71597	Mm.158735	NM_027837	ENSMUSG00000031621	Isx	9130012O13Rik|Pix-1	intestine specific homeobox	protein-coding	9.703	15.302	4.874	11.715	6.561	3.504	9.002	9.975	6.092	9.734	6.213	2.540	11.543	12.970	11.212	nan	7.539	9.392	3.606	3.025	3.052	nan	2.804	2.589	14.505
10807	chr4	140632272	140634226	+	0	NA	intron (NM_001290803, intron 1 of 28)	intron (NM_001290803, intron 1 of 28)	15507	NM_001112723	72754	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	4.779	13.003	3.845	6.104	2.549	1.468	4.310	4.195	nan	4.178	2.661	1.636	3.022	5.703	6.506	5.934	1.834	5.977	2.839	1.040	0.733	4.377	nan	0.852	9.869
2635	chr11	93291130	93299688	+	0	NA	intron (NM_028296, intron 2 of 8)	intron (NM_028296, intron 2 of 8)	196119	NM_028296	72605	Mm.342160	NM_028296	ENSMUSG00000056158	Car10	2700029L05Rik|BB085816|Ca10	carbonic anhydrase 10	protein-coding	1.105	nan	0.220	1.264	0.326	0.100	0.244	0.466	1.428	1.114	0.295	0.188	0.273	0.530	0.538	1.653	nan	2.686	4.095	nan	1.942	5.199	nan	nan	0.698
10349	chr4	106660019	106661189	+	0	NA	Intergenic	Intergenic	9535	NM_001083887	230577	Mm.134029	NM_172272	ENSMUSG00000043572	Pars2	BC027073	prolyl-tRNA synthetase (mitochondrial)(putative)	protein-coding	3.477	5.019	1.857	2.665	1.797	0.658	5.021	4.982	2.862	2.944	5.569	1.856	3.231	4.317	3.955	3.382	2.577	3.106	3.364	2.850	2.194	6.831	1.990	1.609	4.996
8625	chr2	125603433	125609975	+	0	NA	intron (NM_001081091, intron 9 of 27)	intron (NM_001081091, intron 9 of 27)	18409	NM_001081091	99100	Mm.330545	NM_001081091	ENSMUSG00000068394	Cep152	AI851464|mKIAA0912	centrosomal protein 152	protein-coding	6.342	3.020	1.371	5.523	2.538	1.296	3.802	6.311	6.380	9.012	2.470	1.871	7.628	7.769	5.952	9.027	8.555	8.202	nan	1.480	0.864	2.378	1.237	0.793	6.374
14678	chr8	122433669	122441944	+	0	NA	intron (NR_028354, intron 6 of 10)	intron (NR_028354, intron 6 of 10)	-4866	NM_007806	13057	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	7.096	4.143	2.275	4.618	4.474	3.443	6.603	8.714	5.238	6.783	4.587	4.531	9.309	10.231	7.953	nan	7.908	6.172	1.721	2.215	2.135	3.128	1.792	1.952	8.377
14585	chr8	109816600	109818449	+	0	NA	intron (NM_001301211, intron 2 of 22)	intron (NM_001301211, intron 2 of 22)	-21788	NR_028532	100217432		NR_028532		Snord71	MBII-239	small nucleolar RNA, C/D box 71	snoRNA	14.142	12.929	4.936	16.847	9.123	6.979	10.539	13.998	9.014	18.628	10.771	9.089	13.570	14.494	12.678	15.448	12.278	12.678	6.464	4.389	6.895	10.221	5.525	8.923	22.492
269	chr1	67042304	67049241	+	0	NA	Intergenic	Intergenic	-6900	NM_021295	14768	Mm.20522	NM_021295	ENSMUSG00000026000	Lancl1	AW124738|Gpr69|Gpr69a|p40	LanC (bacterial lantibiotic synthetase component C)-like 1	protein-coding	6.914	0.553	0.348	2.738	2.440	0.870	4.086	3.067	4.393	4.905	1.872	1.044	6.017	nan	5.168	9.440	6.221	nan	1.312	1.021	0.359	2.617	0.871	0.363	4.965
363	chr1	82863648	82864971	+	0	NA	intron (NM_001347077, intron 2 of 12)	intron (NM_001347077, intron 2 of 12)	24849	NM_001347077	15463	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	2.533	0.874	0.800	1.798	1.820	1.388	1.901	2.312	2.119	1.961	0.749	0.503	2.965	3.286	1.890	3.959	3.390	2.882	nan	nan	1.016	0.630	nan	0.539	1.001
12208	chr6	48681216	48684059	+	0	NA	Intergenic	Intergenic	-1941	NM_001243200	107526	Mm.333048	NM_174990	ENSMUSG00000054435	Gimap4	AU019574|E430007K16Rik|Ian-1|Ian1|Imap4	GTPase, IMAP family member 4	protein-coding	0.996	9.557	6.789	1.588	0.676	0.608	0.938	0.622	0.965	0.956	0.451	0.849	0.375	0.528	0.955	1.229	1.218	1.021	nan	1.925	1.225	0.440	0.570	0.432	0.587
7961	chr2	11253617	11255451	+	0	NA	intron (NM_008859, intron 10 of 17)	intron (NM_008859, intron 10 of 17)	82152	NM_008859	18761	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	6.474	4.156	2.180	2.495	1.398	0.940	2.481	10.280	1.993	2.792	3.001	0.939	4.365	3.146	3.455	5.021	3.879	3.635	1.237	1.702	0.645	1.910	1.609	1.100	4.189
13527	chr7	108760591	108766117	+	0	NA	Intergenic	Intergenic	8496	NM_146723	258718	Mm.223152	NM_146723	ENSMUSG00000051200	Olfr513	MOR195-1	olfactory receptor 513	protein-coding	2.539	1.620	1.457	0.718	1.056	0.868	2.330	8.263	1.261	1.269	0.920	1.626	2.667	2.086	1.614	nan	1.292	nan	nan	0.843	0.932	0.499	2.002	2.392	0.739
4264	chr13	81241420	81250346	+	0	NA	intron (NM_054053, intron 85 of 89)	L1Md_F2|LINE|L1	281809	NR_015587	319983	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	4.505	0.843	0.474	3.505	3.055	1.553	2.259	2.582	4.706	4.134	2.638	1.233	2.732	3.703	3.171	3.458	2.467	5.667	0.989	0.649	0.688	1.049	0.607	0.552	2.703
4573	chr14	31432935	31450104	+	0	NA	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-5419	NM_011894	24056	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	5.695	7.825	3.494	5.381	3.356	1.983	4.224	6.736	3.368	4.619	3.512	2.044	4.568	7.793	6.028	nan	nan	nan	1.907	2.313	1.764	nan	1.268	1.122	9.077
14384	chr8	84131759	84133808	+	0	NA	TTS (NM_145970)	TTS (NM_145970)	6794	NM_001013384	244550	Mm.334654	NM_001013384	ENSMUSG00000012889	Podnl1	5832418A03Rik|Gm506	podocan-like 1	protein-coding	5.678	1.392	0.467	2.053	2.299	2.435	3.356	2.571	nan	3.599	0.535	0.766	4.533	3.972	5.026	6.193	5.938	6.370	nan	0.973	0.602	0.904	0.598	0.678	3.729
4140	chr13	53023869	53025629	+	0	NA	Intergenic	Intergenic	-43710	NM_017373	18030	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	5.025	6.505	2.708	5.757	3.686	2.209	3.710	4.585	3.200	6.871	3.182	1.784	3.860	4.597	4.830	5.886	2.946	6.147	3.843	1.968	2.170	4.994	3.034	3.719	7.060
12681	chr6	122289329	122290945	+	0	NA	Intergenic	Intergenic	-7304	NM_016970	50928	Mm.20434	NM_016970	ENSMUSG00000030114	Klrg1	2F1-Ag|MAFA|MAFA-L	killer cell lectin-like receptor subfamily G, member 1	protein-coding	8.232	8.267	2.922	7.259	4.007	2.683	11.776	10.184	4.652	11.669	6.388	5.085	7.545	11.137	8.916	13.320	9.314	7.984	7.133	7.650	4.975	8.390	nan	9.318	11.306
12466	chr6	91655327	91666961	+	0	NA	Intergenic	Intergenic	-22923	NM_009320	21366	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	5.152	2.694	1.311	nan	3.231	2.073	4.489	7.635	2.914	3.126	2.566	1.982	3.971	4.450	5.298	6.944	4.518	4.759	4.888	3.345	3.483	4.323	5.068	4.478	5.598
10281	chr4	94822901	94829888	+	0	NA	intron (NM_001290549, intron 8 of 22)	intron (NM_001290549, intron 8 of 22)	87105	NM_001290551	21687	Mm.14313	NM_013690	ENSMUSG00000006386	Tek	AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2	endothelial-specific receptor tyrosine kinase	protein-coding	5.746	nan	2.545	6.502	5.115	3.082	5.130	5.207	nan	nan	4.970	3.002	5.187	6.968	nan	7.017	4.336	6.173	4.237	2.644	2.597	nan	4.150	3.773	6.110
11424	chr5	91509015	91514276	+	0	NA	Intergenic	(GGGA)n|Simple_repeat|Simple_repeat	-6055	NM_145562	231440	Mm.5002	NM_145562	ENSMUSG00000034981	Parm1	2210012L08Rik|9130213B05Rik|W91666	prostate androgen-regulated mucin-like protein 1	protein-coding	1.519	0.725	0.472	1.021	1.845	1.053	2.663	1.793	3.512	2.979	3.054	4.608	1.919	3.117	3.269	1.670	1.155	3.236	0.481	0.352	0.327	0.479	0.252	0.126	1.035
11244	chr5	54336884	54340686	+	0	NA	Intergenic	Intergenic	-11207	NR_038045	330086	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13|ENSMUSG00000072936	predicted gene 10440	ncRNA	4.529	0.970	0.416	5.136	3.422	1.699	2.915	5.070	4.043	4.023	3.553	3.039	2.774	4.873	4.841	4.552	2.568	5.510	0.878	1.148	0.548	0.983	0.833	0.587	4.214
4876	chr14	77216388	77220732	+	0	NA	intron (NM_001253759, intron 1 of 19)	intron (NM_001253759, intron 1 of 19)	61797	NM_172813	239188	Mm.441158	NM_172813	ENSMUSG00000022012	Enox1	B230207J08|D230005D02Rik	ecto-NOX disulfide-thiol exchanger 1	protein-coding	6.512	1.052	0.454	7.157	4.318	1.808	6.192	11.691	6.732	9.144	3.557	3.053	7.818	9.626	10.343	10.561	4.519	7.939	3.994	1.451	0.893	3.032	3.829	2.422	7.521
12244	chr6	52570494	52573951	+	0	NA	intron (NM_145567, intron 4 of 7)	PB1D10|SINE|Alu	68078	NM_145567	58875	Mm.286458	NM_145567	ENSMUSG00000029776	Hibadh	6430402H10Rik|AI265272	3-hydroxyisobutyrate dehydrogenase	protein-coding	3.130	0.714	0.521	2.321	1.566	0.758	2.873	4.337	3.295	4.052	1.969	1.640	4.563	6.054	3.920	6.150	3.341	3.692	nan	0.447	0.280	0.653	0.397	0.318	2.431
1449	chr10	76095765	76098337	+	0	NA	intron (NM_023219, intron 5 of 14)	Lx2B2|LINE|L1	13967	NM_023219	64454	Mm.155678	NM_023219	ENSMUSG00000020226	Slc5a4b	2010104G07Rik|SAAT1|SGLT3-b|SGLT3b|pSGLT2	solute carrier family 5 (neutral amino acid transporters, system A), member 4b	protein-coding	6.004	0.704	0.283	6.019	5.393	1.937	2.578	4.349	4.105	7.012	2.680	0.838	4.902	9.428	4.556	6.186	4.246	5.933	nan	0.409	0.247	0.496	0.142	0.136	7.615
7855	chr19	47803810	47806512	+	0	NA	intron (NM_027559, intron 8 of 37)	L1Md_T|LINE|L1	32200	NM_027559	100048534	Mm.29457	NM_027559	ENSMUSG00000044948	Cfap43	4632415N18Rik|4930428C11Rik|4930463G05Rik|AI429486|D19Ertd652e|Wdr96	cilia and flagella associated protein 43	protein-coding	4.518	6.332	2.194	nan	2.668	2.304	5.141	5.093	2.766	5.294	7.338	3.201	3.536	5.967	4.888	5.514	4.960	5.010	1.622	1.276	1.826	3.759	1.857	1.932	8.754
14316	chr8	73296143	73298594	+	0	NA	intron (NM_010687, intron 1 of 14)	intron (NM_010687, intron 1 of 14)	56172	NM_001317391	16795	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	1.879	2.942	1.707	3.554	2.550	1.960	4.687	6.201	nan	2.353	5.305	2.943	5.224	4.949	4.955	5.666	3.054	4.218	4.365	3.108	2.908	7.664	2.144	3.302	4.740
9046	chr2	168368680	168375835	+	0	NA	Intergenic	Intergenic	-102926	NM_001081134	241794	Mm.425102	NM_001081134	ENSMUSG00000074575	Kcng1	AW536275|OTTMUSG00000016048	potassium voltage-gated channel, subfamily G, member 1	protein-coding	1.714	1.283	0.602	1.387	0.899	0.574	2.687	2.613	1.546	1.396	3.819	3.326	2.103	nan	2.129	2.574	1.458	nan	5.118	2.234	1.657	5.191	7.637	5.536	nan
7847	chr19	47253874	47254959	+	0	NA	intron (NM_001163480, intron 4 of 5)	MTEa|LTR|ERVL-MaLR	19173	NR_105961	102466782		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0.523	0.909	0.490	1.859	0.759	0.721	1.450	0.429	0.366	1.229	0.235	0.606	0.314	1.053	0.885	0.983	0.953	1.251	4.520	5.481	6.526	7.852	10.960	10.338	1.543
2873	chr11	105382206	105388049	+	0	NA	intron (NM_172568, intron 8 of 11)	intron (NM_172568, intron 8 of 11)	71608	NM_172568	632687	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|OTTMUSG00000002847|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	2.693	0.803	0.622	nan	0.948	0.524	3.207	3.542	nan	nan	1.452	1.098	3.446	3.079	3.213	3.839	3.149	nan	7.592	4.088	3.186	5.944	5.942	4.033	2.267
6757	chr17	56855618	56857931	+	0	NA	intron (NM_001039114, intron 7 of 14)	intron (NM_001039114, intron 7 of 14)	17673	NM_001039114	328845	Mm.179421	NM_001039114	ENSMUSG00000024207	Acsbg2	Bgr	acyl-CoA synthetase bubblegum family member 2	protein-coding	nan	9.406	3.224	7.886	4.387	3.142	7.956	6.371	4.107	7.823	5.183	3.199	4.786	8.512	7.467	10.714	7.136	5.547	4.859	3.475	4.203	5.351	5.285	4.810	13.391
12952	chr7	19432680	19437272	+	0	NA	intron (NM_172279, intron 10 of 16)	intron (NM_172279, intron 10 of 16)	-13559	NR_073015	100503495	Mm.410762	NR_073014	ENSMUSG00000040705	A930016O22Rik	-	RIKEN cDNA A930016O22 gene	ncRNA	1.291	0.610	0.760	1.021	0.850	0.703	2.403	5.849	2.152	1.134	1.089	1.152	1.853	1.473	1.368	1.015	1.231	1.339	0.451	0.707	0.614	0.359	0.601	0.573	0.608
8663	chr2	129458593	129459784	+	0	NA	intron (NM_177653, intron 6 of 6)	intron (NM_177653, intron 6 of 6)	77414	NM_177653	228592	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	6.246	1.837	1.398	5.298	1.542	0.867	0.766	4.147	3.145	3.900	4.782	1.646	3.373	3.171	2.666	4.866	2.388	5.296	nan	0.948	0.491	1.430	0.642	0.575	4.990
1314	chr10	58723629	58732359	+	0	NA	Intergenic	ORR1A0|LTR|ERVL-MaLR	31249	NR_033565	103505	Mm.50261	NR_033565		BB019430	-	expressed sequence BB019430	ncRNA	8.298	1.845	1.062	3.871	3.375	2.037	5.414	7.530	3.945	4.841	2.434	1.668	5.828	6.583	5.690	7.309	7.275	4.788	nan	1.975	1.311	2.030	2.634	2.223	6.794
14856	chr9	13367433	13369141	+	0	NA	Intergenic	Intergenic	-63074	NR_028271	18689	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	4.095	3.321	0.775	4.863	2.761	1.326	4.133	4.076	3.993	4.347	6.063	3.286	4.007	4.869	4.665	4.946	1.273	4.916	3.333	1.544	1.217	4.419	2.178	1.056	5.208
2748	chr11	98633013	98642872	+	0	NA	exon (NM_001007461, exon 11 of 11)	exon (NM_001007461, exon 11 of 11)	-8817	NM_029727	76758	Mm.159149	NM_029727	ENSMUSG00000017211	Gsdma2	2200001G21Rik|2210006M16Rik|2210009F20Rik|2210411P14Rik|Gsdm2|Gsdml2	gasdermin A2	protein-coding	6.198	nan	0.949	5.725	6.083	3.166	5.754	6.912	4.455	3.976	3.065	2.197	6.147	9.489	7.275	7.947	nan	5.275	2.973	nan	1.358	2.446	nan	nan	6.402
1798	chr10	120679465	120681307	+	0	NA	Intergenic	Intergenic	-85346	NR_038000	70874	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	2.919	1.455	0.644	2.900	2.515	0.757	2.477	1.267	4.423	6.444	0.484	0.997	3.964	3.482	3.468	6.069	3.559	5.253	1.986	1.270	0.707	1.781	2.238	0.952	3.545
5102	chr15	34183121	34186693	+	0	NA	Intergenic	Intergenic	-53119	NM_033521	114128	Mm.197518	NM_033521	ENSMUSG00000022257	Laptm4b	C330023P13Rik|LAPTM4beta	lysosomal-associated protein transmembrane 4B	protein-coding	5.050	0.568	0.638	3.410	3.488	2.327	5.139	8.916	4.196	4.804	3.177	2.843	6.710	5.555	4.473	4.818	4.776	5.723	1.871	1.109	1.235	nan	2.619	2.356	nan
2535	chr11	80195830	80198336	+	0	NA	intron (NM_028019, intron 4 of 4)	ID_B1|SINE|B4	-11972	NM_001163354	59040	Mm.489674	NM_021536	ENSMUSG00000017686	Rhot1	2210403N23Rik|AA415293|AF244542|AI834919|Arht1|C430039G08Rik|Miro1	ras homolog family member T1	protein-coding	12.645	13.767	7.301	8.957	11.155	7.172	9.574	9.267	8.277	8.466	10.490	5.372	8.236	12.500	8.770	8.981	10.707	8.249	8.450	8.073	5.199	6.406	9.057	6.928	9.124
11793	chr5	135964436	135965412	+	0	NA	intron (NM_001160366, intron 6 of 10)	B1_Mus1|SINE|Alu	9552	NM_001160366	109267	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	6.250	4.513	2.098	6.539	2.165	0.879	2.750	1.913	3.372	7.037	2.603	1.055	1.783	4.367	4.311	4.508	1.919	4.742	3.196	2.200	4.479	6.669	3.050	3.797	8.522
522	chr1	121399501	121406779	+	0	NA	Intergenic	B4A|SINE|B4	-27927	NM_029955	70829	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	8.496	2.161	1.161	5.576	4.497	2.805	7.585	6.164	4.151	4.928	3.625	2.724	6.325	6.975	5.481	8.764	6.951	6.609	1.469	1.395	1.223	1.699	1.287	0.800	6.633
7817	chr19	46077322	46078565	+	0	NA	intron (NM_053086, intron 1 of 12)	B1_Mur2|SINE|Alu	2096	NM_001039351	70769	Mm.402190	NM_053086	ENSMUSG00000015176	Nolc1	NOPP130|NOPP140|P130	nucleolar and coiled-body phosphoprotein 1	protein-coding	6.656	11.788	3.733	8.374	2.560	1.721	5.340	6.436	3.794	7.751	4.976	2.477	3.337	5.430	5.980	7.489	4.339	7.566	1.844	1.472	2.161	3.928	2.051	2.864	12.149
1423	chr10	74627052	74639364	+	0	NA	3' UTR (NM_001142738, exon 31 of 31)	3' UTR (NM_001142738, exon 31 of 31)	-334023	NM_010311	14687	Mm.32595	NM_010311	ENSMUSG00000040009	Gnaz	AI847979|Gz	guanine nucleotide binding protein, alpha z subunit	protein-coding	6.487	1.109	0.650	nan	3.298	1.853	7.844	7.607	3.174	3.560	1.194	1.589	6.635	5.968	nan	7.626	4.882	5.201	nan	1.309	1.010	2.708	1.960	1.657	7.257
2412	chr11	70709989	70712339	+	0	NA	intron (NM_153103, intron 16 of 22)	RSINE1|SINE|B4	5174	NR_105890	102465557		NR_105890	ENSMUSG00000105932	Mir6925	mmu-mir-6925	microRNA 6925	ncRNA	5.151	2.096	1.449	1.972	4.969	3.094	3.171	3.094	3.635	4.319	4.728	1.627	4.436	5.366	2.342	3.303	7.433	4.341	1.593	1.971	0.891	0.650	nan	0.630	nan
7116	chr18	34599124	34605458	+	0	NA	intron (NM_030147, intron 20 of 21)	intron (NM_030147, intron 20 of 21)	-4823	NM_177773	271508	Mm.417609	NM_177773	ENSMUSG00000049357	4933408B17Rik	-	RIKEN cDNA 4933408B17 gene	protein-coding	3.734	0.708	0.634	2.004	1.846	1.348	4.552	3.798	2.407	2.650	0.465	0.806	6.250	4.512	4.002	4.820	5.042	3.718	0.760	0.415	0.370	0.510	0.439	0.334	4.188
6917	chr17	84584092	84590692	+	0	NA	intron (NM_177606, intron 17 of 29)	intron (NM_177606, intron 17 of 29)	-39107	NM_172256	213575	Mm.246119	NM_172256	ENSMUSG00000024253	Dync2li1	4933404O11Rik|CGI-60|D2lic|LIC3|mD2LIC	dynein cytoplasmic 2 light intermediate chain 1	protein-coding	9.211	18.882	4.993	12.009	4.401	3.309	10.383	7.996	nan	12.710	10.144	4.816	7.810	10.693	10.754	11.376	7.420	9.337	4.829	2.802	4.048	6.714	4.273	5.954	16.231
2017	chr11	20855188	20859163	+	0	NA	Intergenic	Intergenic	-26067	NM_173752	216551	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	8.216	nan	1.199	4.103	4.904	2.856	10.258	6.315	4.063	4.354	5.429	4.159	5.680	6.030	5.536	6.325	5.867	6.471	2.244	2.864	1.840	2.272	4.062	1.860	4.318
10219	chr4	82197650	82202136	+	0	NA	Intergenic	Intergenic	134513	NR_040659	545641	Mm.216028	NR_040659	ENSMUSG00000085022	Gm5860	EG545641	predicted gene 5860	ncRNA	0.864	0.692	0.471	0.938	0.356	0.254	0.279	0.441	0.569	0.565	0.528	0.476	0.277	0.437	0.644	0.741	0.476	0.621	3.840	4.082	3.393	10.041	2.086	1.418	0.543
8565	chr2	118725086	118729565	+	0	NA	intron (NM_001290790, intron 1 of 30)	intron (NM_001290790, intron 1 of 30)	1113	NM_177568	18796	Mm.215156	NM_177568	ENSMUSG00000040061	Plcb2	AI550384|B230205M18Rik|B230399N12	phospholipase C, beta 2	protein-coding	6.502	6.304	1.818	5.626	2.540	1.658	4.437	7.673	2.430	9.090	2.467	1.350	nan	4.965	5.251	nan	6.619	7.165	1.660	1.229	1.622	2.208	1.877	2.068	13.530
4031	chr13	42183449	42185020	+	0	NA	exon (NM_007772, exon 9 of 9)	exon (NM_007772, exon 9 of 9)	-117242	NM_010104	13614	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	3.796	1.882	0.798	2.617	2.601	1.344	5.499	6.065	3.743	5.271	0.991	1.273	4.838	4.894	6.173	5.895	2.489	5.189	2.497	1.214	0.134	5.731	0.737	0.738	6.029
2661	chr11	94450157	94454787	+	0	NA	intron (NM_001177888, intron 9 of 34)	intron (NM_001177888, intron 9 of 34)	21726	NM_001177888	12291	Mm.29585	NM_009783	ENSMUSG00000020866	Cacna1g	Cav3.1d|[a]1G|a1G|alpha-1G|mKIAA1123	calcium channel, voltage-dependent, T type, alpha 1G subunit	protein-coding	1.670	nan	5.058	2.421	1.592	1.617	0.897	3.013	1.283	1.576	1.813	2.026	1.339	1.298	1.001	1.227	nan	1.392	3.050	nan	3.813	3.769	nan	nan	1.175
2884	chr11	105863919	105876712	+	0	NA	intron (NM_181071, intron 13 of 25)	intron (NM_181071, intron 13 of 25)	73832	NM_007805	13056	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	0.360	0.509	0.228	nan	0.166	0.106	0.336	0.438	nan	nan	0.243	0.149	0.137	nan	0.475	0.565	0.328	nan	4.709	3.548	2.318	nan	6.015	4.091	0.461
10188	chr4	70176255	70182138	+	0	NA	Intergenic	MLT1I|LTR|ERVL-MaLR	231239	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	2.346	0.761	0.473	1.621	1.122	0.841	1.545	1.424	1.869	1.655	0.795	0.549	1.722	1.841	1.544	nan	1.710	2.698	5.570	4.393	3.087	nan	nan	2.114	nan
3841	chr13	10061919	10066434	+	0	NA	intron (NM_033269, intron 3 of 4)	intron (NM_033269, intron 3 of 4)	296627	NM_033269	12671	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0.955	1.770	0.739	1.021	0.190	0.109	0.274	0.869	0.707	0.657	0.463	0.419	0.239	0.502	0.545	0.712	0.703	1.381	2.499	1.283	0.571	4.794	1.353	0.431	0.520
8748	chr2	145695592	145700572	+	0	NA	Intergenic	Intergenic	-3113	NR_033220	408057	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	7.125	0.791	0.614	4.433	6.838	4.590	7.223	7.804	3.813	4.500	2.391	1.493	9.071	7.011	5.670	6.753	5.943	6.877	nan	1.600	1.182	1.575	1.747	1.283	7.311
1324	chr10	59338568	59344182	+	0	NA	intron (NM_001316370, intron 3 of 13)	RLTR25B|LTR|ERVK	18079	NM_001316370	18451	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	6.912	5.233	2.034	5.561	4.827	3.501	5.800	6.377	3.909	5.741	3.915	2.805	5.675	9.227	6.751	6.375	5.977	5.593	nan	1.605	1.820	3.168	1.962	2.266	7.330
11483	chr5	101010410	101015116	+	0	NA	Intergenic	L1Md_F2|LINE|L1	166534	NM_172715	231510	Mm.271911	NM_172715	ENSMUSG00000029314	Agpat9	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|GPAT-3|Gpat3|mGPAT3	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding	1.536	9.598	6.036	1.696	1.110	0.786	0.615	0.744	1.449	1.013	0.880	1.383	0.530	0.748	0.846	0.915	0.823	1.187	0.704	1.442	1.164	0.643	0.578	0.624	0.846
13664	chr7	123322037	123323988	+	0	NA	intron (NM_001122641, intron 4 of 18)	intron (NM_001122641, intron 4 of 18)	46903	NM_001122643	70497	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.567	0.588	0.605	0.531	0.434	0.256	0.548	nan	0.623	0.617	0.983	0.710	0.218	0.555	nan	0.738	0.295	1.102	4.706	1.841	1.031	2.192	5.739	4.349	0.740
12946	chr7	17376433	17380117	+	0	NA	Intergenic	L1Md_T|LINE|L1	174798	NM_054064	114872	Mm.322280	NM_054064	ENSMUSG00000023159	Psg29	AA102956|AA409969|cea17	pregnancy-specific glycoprotein 29	protein-coding	5.906	1.022	0.735	3.579	3.056	2.135	4.164	7.361	3.547	4.504	2.578	2.989	4.251	5.158	4.485	5.998	6.878	5.513	3.595	1.898	2.118	2.419	4.664	4.256	8.847
15641	chr9	123418238	123422350	+	0	NA	intron (NM_153168, intron 9 of 20)	ORR1C2|LTR|ERVL-MaLR	53354	NM_153168	102436	Mm.276076	NM_153168	ENSMUSG00000035202	Lars2	AI035546|Kiaa0028|LEURS	leucyl-tRNA synthetase, mitochondrial	protein-coding	6.636	3.333	2.258	nan	nan	1.536	7.239	6.852	3.051	4.109	1.255	1.031	5.893	4.667	7.142	7.895	5.507	5.075	1.489	1.329	2.035	0.872	4.893	5.116	8.420
11781	chr5	135362039	135365156	+	0	NA	intron (NM_001346745, intron 2 of 5)	intron (NM_001346745, intron 2 of 5)	-6356	NM_145414	100609	Mm.281189	NM_145414	ENSMUSG00000000916	Nsun5	9830109N13Rik|AI326939|Nol1r|Wbscr20|Wbscr20a	NOL1/NOP2/Sun domain family, member 5	protein-coding	3.685	0.808	0.232	5.394	0.977	0.346	1.256	0.833	2.057	2.205	1.373	0.752	0.901	2.154	1.461	2.118	1.127	3.312	0.627	0.668	0.559	0.589	nan	0.556	2.636
12603	chr6	114592611	114595039	+	0	NA	Intergenic	IMPB_01|Satellite|Satellite	-49272	NM_028835	74244	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	8.023	5.380	3.196	6.452	3.326	2.092	4.272	6.872	5.094	5.000	3.905	2.170	4.816	7.867	6.328	7.778	7.274	6.327	2.998	1.434	0.996	2.717	nan	1.358	6.529
14818	chr8	129286259	129295307	+	0	NA	Intergenic	L1Md_F|LINE|L1	27153	NR_144501	102635552		NM_001346808		Gm32856	-	predicted gene, 32856	protein-coding	7.071	nan	0.878	4.536	4.747	2.532	6.479	6.807	5.661	6.189	2.915	2.117	6.978	8.229	8.397	8.912	6.010	7.608	nan	1.111	1.192	nan	0.923	nan	7.122
10711	chr4	135501490	135504887	+	0	NA	intron (NM_030189, intron 1 of 8)	intron (NM_030189, intron 1 of 8)	7201	NM_030189	78806	Mm.374844	NM_030189	ENSMUSG00000028801	Stpg1	4930403G18Rik|4930555I21Rik|Mapo2	sperm tail PG rich repeat containing 1	protein-coding	7.237	4.718	1.816	6.887	5.370	3.704	4.262	8.295	4.382	5.261	3.672	2.017	4.284	6.564	5.060	6.526	4.306	5.210	3.153	3.286	2.991	4.192	4.255	4.186	7.472
8605	chr2	121273441	121279478	+	0	NA	Intergenic	ORR1A4|LTR|ERVL-MaLR	-5052	NM_013735	27223	Mm.215389	NM_013735	ENSMUSG00000043909	Trp53bp1	53BP1|Tp53bp1|m53BP1|p53BP1	transformation related protein 53 binding protein 1	protein-coding	8.447	6.097	3.060	6.897	4.375	3.273	6.194	8.252	4.552	7.461	4.265	2.388	nan	8.472	6.193	nan	7.319	6.379	2.810	2.343	2.298	2.973	2.846	2.892	nan
9879	chr3	151782707	151786635	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	-21780	NM_031367	15061	Mm.219544	NM_031367	ENSMUSG00000039146	Ifi44l	H-28|H28|H28-1|NS1178	interferon-induced protein 44 like	protein-coding	8.001	0.874	0.235	4.556	5.822	2.839	7.851	9.388	5.681	6.297	5.309	5.193	5.661	9.106	6.388	6.465	6.103	7.748	2.039	1.502	0.899	1.981	1.852	1.027	7.561
12678	chr6	121111764	121114494	+	0	NA	intron (NM_001270475, intron 1 of 31)	intron (NM_001270475, intron 1 of 31)	17893	NM_001270475	194401	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	0.429	0.718	0.265	0.432	0.315	0.486	0.676	0.898	0.482	0.391	0.568	0.516	0.244	nan	0.748	0.709	0.730	0.433	4.081	4.105	3.341	2.940	8.082	7.936	0.490
11988	chr5	150191748	150195311	+	0	NA	Intergenic	B3|SINE|B2	-66401	NM_172887	320365	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	5.994	1.239	1.082	3.467	3.920	2.320	4.990	4.967	3.698	4.478	7.389	5.055	4.748	5.517	3.883	3.814	3.826	3.788	1.121	0.963	0.759	0.882	1.366	1.116	2.979
8567	chr2	119032744	119034599	+	0	NA	Intergenic	MLT1N2|LTR|ERVL-MaLR	-1119	NM_173450	271842	Mm.33617	NM_173450	ENSMUSG00000027324	Rpusd2	4921503C21Rik|9630001E10|BB231107	RNA pseudouridylate synthase domain containing 2	protein-coding	9.851	8.090	3.243	5.472	4.254	2.445	6.472	8.652	4.003	5.822	4.060	3.012	6.686	8.469	6.049	nan	7.023	6.477	4.235	3.996	2.350	4.184	4.854	3.820	11.162
8371	chr2	75495811	75499941	+	0	NA	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-53697	NR_040635	77269	Mm.389278	NR_040635		9430019J16Rik	-	RIKEN cDNA 9430019J16 gene	ncRNA	nan	12.371	4.184	11.109	5.262	3.518	11.144	13.139	8.849	12.647	9.133	6.517	12.359	11.807	12.149	14.563	10.763	12.588	8.320	3.510	3.696	7.494	4.815	5.026	13.512
5496	chr15	83051392	83055485	+	0	NA	Intergenic	Intergenic	-20041	NM_001271411	74039	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	4.995	4.191	1.578	7.286	2.333	1.824	2.151	2.684	nan	2.756	1.469	1.447	1.729	2.788	nan	nan	nan	3.569	nan	1.864	1.745	4.409	1.560	1.216	3.386
9031	chr2	167625299	167628171	+	0	NA	intron (NM_001311146, intron 1 of 2)	B1_Mur3|SINE|Alu	5270	NM_001311146	66589	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	7.121	2.215	1.261	3.376	6.069	3.899	4.789	3.743	2.568	3.381	3.203	1.733	2.531	4.715	3.039	4.404	2.842	nan	nan	1.343	1.234	1.105	0.835	0.731	6.125
13609	chr7	119165428	119171035	+	0	NA	intron (NM_001024138, intron 1 of 1)	MTEa|LTR|ERVL-MaLR	16143	NM_001024138	209776	Mm.300632	NM_001024138	ENSMUSG00000066197	Gpr139	GPRg1|Gm495|PGR3	G protein-coupled receptor 139	protein-coding	10.290	5.888	1.980	9.273	5.798	3.500	11.005	12.368	6.745	11.098	5.578	4.395	13.381	12.570	10.341	9.673	8.082	11.232	4.034	2.525	2.261	3.976	3.049	3.085	10.956
6794	chr17	66288068	66289960	+	0	NA	Intergenic	Intergenic	160736	NM_172963	68617	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding	3.489	5.984	3.211	4.583	2.066	1.367	3.831	4.482	3.830	3.365	2.810	2.577	3.594	4.903	4.252	5.952	3.229	4.010	4.363	2.752	1.285	4.077	1.861	1.508	4.493
14739	chr8	125446279	125449293	+	0	NA	exon (NM_001081337, exon 13 of 21)	exon (NM_001081337, exon 13 of 21)	44924	NM_001081337	244668	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	5.819	2.761	1.872	2.746	5.057	2.648	3.343	7.140	2.949	3.627	2.292	1.904	3.596	6.137	4.231	5.302	5.623	4.592	nan	2.090	1.448	nan	1.146	nan	3.728
4202	chr13	60803610	60806796	+	0	NA	Intergenic	Intergenic	-2359	NM_027344	70202	Mm.158337	NM_027344	ENSMUSG00000056728	Ctsll3	2310051M13Rik	cathepsin L-like 3	protein-coding	4.798	0.427	0.238	4.433	3.852	1.528	5.488	5.528	5.370	6.429	2.932	1.251	6.483	8.165	7.485	8.556	3.612	8.912	2.899	0.821	0.827	1.613	2.450	1.724	6.152
13600	chr7	118090565	118098441	+	0	NA	Intergenic	Intergenic	21644	NM_170669	267019	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	3.806	1.902	0.675	4.246	3.172	1.668	2.647	2.577	2.919	3.886	1.020	0.814	3.404	5.373	3.068	3.232	2.427	5.628	0.970	0.657	0.764	1.861	0.778	0.600	5.182
13255	chr7	72602824	72607179	+	0	NA	Intergenic	Intergenic	-298406	NM_001024703	244049	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	nan	0.403	0.563	4.288	4.266	2.546	2.805	5.061	4.947	4.455	1.980	2.362	4.472	6.105	3.012	2.765	2.850	5.414	0.843	0.605	0.964	1.296	0.858	0.664	3.266
14801	chr8	129037612	129042017	+	0	NA	intron (NM_029061, intron 5 of 13)	L1_Mus4|LINE|L1	25678	NM_029061	74703	Mm.196017	NM_029061	ENSMUSG00000025808	Ccdc7a	4930517G15Rik|4930540C21Rik|Biot2|Ccdc7	coiled-coil domain containing 7A	protein-coding	4.136	nan	1.410	5.209	5.248	4.590	3.580	5.944	4.870	5.109	1.935	2.434	4.565	2.774	nan	7.454	4.872	5.290	3.373	3.537	3.769	nan	4.168	nan	4.680
9863	chr3	146161580	146165905	+	0	NA	intron (NM_001005846, intron 2 of 13)	intron (NM_001005846, intron 2 of 13)	13568	NM_001005846	68279	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	8.021	7.344	2.172	10.005	4.875	3.712	10.512	8.279	7.738	13.410	6.804	4.477	12.111	12.160	10.451	11.677	6.410	12.516	5.389	1.650	1.672	5.238	2.968	3.150	11.788
459	chr1	93767073	93770966	+	0	NA	intron (NM_174874, intron 3 of 12)	MTD|LTR|ERVL-MaLR	13986	NM_174874	66615	Mm.29087	NM_174874	ENSMUSG00000026280	Atg4b	2510009N07Rik|AW048066|Apg4b|Atg4bl|Autl1	autophagy related 4B, cysteine peptidase	protein-coding	1.299	nan	0.370	1.025	0.344	0.211	3.397	2.622	0.769	0.862	0.418	0.442	1.028	1.246	1.440	3.297	0.974	1.704	nan	1.530	0.761	5.788	1.689	1.027	1.468
3477	chr12	80149532	80153562	+	0	NA	Intergenic	B1F|SINE|Alu	-18703	NR_033514	69548	Mm.269712	NR_033514	ENSMUSG00000097729	2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	3.647	1.305	0.571	3.735	2.912	1.109	3.925	4.456	4.318	3.553	4.775	3.803	4.573	5.962	6.404	7.851	3.485	5.218	1.986	1.098	0.597	2.152	1.511	1.261	6.370
9054	chr2	169432508	169434691	+	0	NA	Intergenic	Intergenic	-200047	NM_080455	228911	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	5.851	0.397	0.287	1.946	0.823	0.394	5.895	7.896	2.924	3.272	4.855	2.823	5.325	5.020	5.085	6.099	6.652	4.047	nan	1.062	0.730	0.512	1.241	0.783	5.999
8816	chr2	152559341	152569455	+	0	NA	Intergenic	Intergenic	-8346	NM_207276	403172	Mm.84518	NM_207276	ENSMUSG00000056544	Defb21	4930525K10Rik|Gm121	defensin beta 21	protein-coding	9.999	1.992	0.667	11.048	5.067	3.707	13.033	11.343	8.319	9.252	7.760	4.424	12.640	12.861	11.229	13.974	10.306	10.618	nan	2.856	2.659	5.199	3.809	3.419	13.339
10321	chr4	102182765	102186042	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-70339	NM_001177983	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	4.156	3.895	1.152	4.224	1.251	0.301	0.857	1.474	4.818	5.086	5.968	3.496	1.298	2.050	nan	2.115	1.404	3.191	1.005	3.069	1.668	3.934	0.555	0.380	2.324
8950	chr2	163649240	163653405	+	0	NA	Intergenic	IAPEz-int|LTR|ERVK	-6179	NM_012032	26943	Mm.218473	NM_012032	ENSMUSG00000017707	Serinc3	AA959945|AA960047|AIGP1|DIFF33|TMS-1|Tde1	serine incorporator 3	protein-coding	6.547	1.034	0.600	2.041	0.715	0.618	1.882	4.798	1.357	1.532	0.600	0.509	5.121	4.367	2.809	5.893	6.449	nan	nan	0.671	0.587	1.067	0.618	0.601	nan
1753	chr10	115990582	115992574	+	0	NA	Intergenic	Intergenic	-26785	NM_011217	19279	Mm.336316	NM_011217	ENSMUSG00000020151	Ptprr	Gmcp1|PTP-SL|PTPBR7|RPTPRR|mPTP213	protein tyrosine phosphatase, receptor type, R	protein-coding	1.901	8.367	6.577	1.101	2.445	1.066	0.740	1.046	1.049	1.386	1.695	1.064	0.568	1.026	0.687	0.685	0.956	nan	1.443	2.390	0.856	0.899	1.777	0.859	0.737
6138	chr16	57525012	57526951	+	0	NA	intron (NM_001040397, intron 4 of 4)	intron (NM_001040397, intron 4 of 4)	-23261	NM_001177871	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	3.190	0.728	0.552	1.162	1.498	0.767	1.331	2.449	2.235	2.334	4.508	4.416	2.693	3.952	2.657	nan	1.884	3.038	nan	1.209	0.379	1.073	0.957	0.238	0.946
9967	chr4	31216201	31218429	+	0	NA	Intergenic	Lx10|LINE|L1	552719	NR_040655	75332	Mm.108636	NR_040655		4930556G01Rik	-	RIKEN cDNA 4930556G01 gene	ncRNA	nan	0.456	0.136	2.121	1.860	0.799	2.541	1.088	1.697	1.851	0.482	0.370	3.494	4.704	3.404	3.185	1.360	3.520	0.607	0.153	0.110	0.273	0.353	0.173	1.423
7006	chr18	7609884	7619039	+	0	NA	intron (NM_001081287, intron 1 of 16)	intron (NM_001081287, intron 1 of 16)	12402	NM_001081287	75739	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	nan	1.325	0.968	2.737	4.370	2.578	4.176	6.104	3.766	3.297	4.191	2.036	nan	5.927	5.048	6.197	4.274	4.311	0.831	0.975	0.820	1.221	0.763	0.605	4.827
8302	chr2	64938880	64944727	+	0	NA	intron (NM_016719, intron 3 of 13)	GA-rich|Low_complexity|Low_complexity	80963	NM_016719	50915	Mm.214554	NM_016719	ENSMUSG00000026888	Grb14	AI505286	growth factor receptor bound protein 14	protein-coding	2.904	0.576	0.423	3.946	2.306	1.576	1.127	1.513	5.682	5.800	0.521	0.653	3.016	3.172	3.490	4.713	3.294	5.708	1.393	0.724	0.797	0.812	0.772	0.608	2.334
2688	chr11	95636875	95641961	+	0	NA	Intergenic	Intergenic	-27539	NM_008831	18673	Mm.263862	NM_008831	ENSMUSG00000038845	Phb	Bap32	prohibitin	protein-coding	7.430	nan	0.710	5.019	7.287	5.085	4.129	7.007	3.401	5.090	4.936	1.682	5.580	7.971	5.645	6.854	5.139	6.107	0.849	nan	1.218	0.626	nan	nan	5.774
4367	chr13	104820970	104825143	+	0	NA	intron (NR_135272, intron 1 of 4)	PB1D10|SINE|Alu	5886	NR_135272	67288	Mm.125465	NM_026075	ENSMUSG00000021716	Srek1ip1	3110031B13Rik|AI462702|AV348305|AW121048|Sfrs12ip1|Srsf12ip1	splicing regulatory glutamine/lysine-rich protein 1interacting protein 1	protein-coding	nan	nan	1.110	3.607	1.356	0.696	1.636	2.831	nan	nan	3.153	1.712	1.905	2.418	2.336	2.756	1.589	3.512	2.863	1.826	1.254	4.867	1.437	1.113	2.659
8559	chr2	118442890	118446429	+	0	NA	intron (NM_001177806, intron 18 of 37)	intron (NM_001177806, intron 18 of 37)	35037	NM_009273	20813	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	3.656	2.818	3.023	3.409	4.240	2.059	1.756	1.810	4.393	6.587	0.758	0.625	nan	7.060	3.447	5.358	5.489	3.631	0.761	0.959	0.832	0.703	0.998	0.600	4.119
7655	chr19	24380930	24384627	+	0	NA	intron (NM_008846, intron 5 of 14)	B4|SINE|B4	94696	NM_026520	68034	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|ENSMUSG00000051082|Gm9849	family with sequence similarity 122, member A	protein-coding	nan	0.732	0.701	nan	2.348	1.334	3.276	nan	2.981	4.346	nan	0.582	3.878	5.135	3.715	3.786	3.074	5.064	nan	1.529	1.260	4.576	nan	2.646	5.223
15876	chrX	163668876	163671952	+	0	NA	Intergenic	Intergenic	90918	NM_028842	74264	Mm.39304	NM_028842	ENSMUSG00000083695	Rnf138rt1	-	ring finger protein 138, retrogene 1	protein-coding	4.353	4.565	1.386	3.202	3.082	1.113	3.516	7.766	4.372	5.393	3.645	2.896	4.262	5.492	5.352	7.083	2.874	6.304	1.903	0.825	0.340	1.593	0.910	0.564	7.401
15393	chr9	96034918	96036140	+	0	NA	intron (NM_011916, intron 33 of 41)	intron (NM_011916, intron 33 of 41)	80769	NM_001311130	24127	Mm.291179	NM_011916	ENSMUSG00000032410	Xrn1	Dhm2|exo|mXrn1	5'-3' exoribonuclease 1	protein-coding	2.457	1.746	0.808	2.676	3.411	1.395	2.991	2.901	3.132	2.088	2.506	2.124	1.965	5.385	2.657	2.878	1.676	3.187	0.756	0.765	0.578	1.067	0.838	0.254	3.149
12698	chr6	125113756	125117627	+	0	NA	intron (NM_001346610, intron 25 of 38)	(TCTA)n|Simple_repeat|Simple_repeat	-16192	NM_138747	110109	Mm.29203	NM_138747	ENSMUSG00000038279	Nop2	120kDa|A530002O17|Nol1	NOP2 nucleolar protein	protein-coding	11.115	12.824	3.653	8.768	6.563	3.621	14.688	16.136	5.325	9.842	8.030	4.308	10.460	15.260	13.600	17.205	10.252	9.337	7.652	3.802	3.199	8.160	4.583	3.992	16.280
4244	chr13	73820628	73822035	+	0	NA	exon (NM_028186, exon 10 of 10)	exon (NM_028186, exon 10 of 10)	26300	NM_028186	72293	Mm.45506	NM_028186	ENSMUSG00000021567	Nkd2	2210403L10Rik|AW212591|mNkd2	naked cuticle 2 homolog (Drosophila)	protein-coding	2.758	1.070	0.187	1.575	0.981	0.399	2.491	6.991	2.174	2.961	2.798	2.429	4.333	4.455	4.184	4.754	1.811	2.641	1.693	0.544	0.921	2.151	1.231	0.614	3.490
12968	chr7	19929360	19931307	+	0	NA	Intergenic	Intergenic	-9190	NM_027514	52118	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	8.072	9.761	4.516	6.006	5.861	3.815	8.134	8.591	2.878	5.156	6.264	3.782	6.333	8.427	7.178	6.850	6.361	5.708	5.153	4.025	3.477	4.934	5.759	3.914	9.450
7641	chr19	23106269	23108468	+	0	NA	Intergenic	LTR33A|LTR|ERVL	-33858	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	2.289	0.718	1.485	2.449	3.316	1.912	1.636	3.028	1.717	1.930	nan	0.780	1.478	4.387	1.604	1.566	1.956	1.899	nan	0.991	0.673	0.568	nan	0.452	1.696
3107	chr11	120174302	120179445	+	0	NA	Intergenic	Intergenic	12983	NR_030682	100042332	Mm.269766	NR_030682		2810410L24Rik	-	RIKEN cDNA 2810410L24 gene	ncRNA	7.281	nan	1.813	5.089	3.146	2.093	9.072	6.941	5.407	6.795	4.132	3.521	7.944	10.396	8.214	8.092	7.098	7.169	5.382	nan	2.784	5.065	3.995	3.314	8.407
3441	chr12	76645131	76647713	+	0	NA	intron (NM_013675, intron 2 of 35)	intron (NM_013675, intron 2 of 35)	64125	NM_013675	20741	Mm.32881	NM_013675	ENSMUSG00000021061	Sptb	AI842465|D330027P03Rik|Gm1301|Spnb-1|Spnb1|ja|jaundiced|mKIAA4219	spectrin beta, erythrocytic	protein-coding	4.134	0.984	0.509	1.414	2.350	1.410	7.512	2.822	2.505	2.141	3.607	3.397	6.011	5.346	4.052	4.072	4.107	3.798	1.187	0.757	0.710	0.941	0.924	0.429	3.764
404	chr1	89536060	89537665	+	0	NA	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	82051	NM_001037136	347722	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	6.885	13.535	3.994	6.631	3.351	1.246	2.080	1.832	3.223	4.772	3.595	1.414	2.125	4.547	3.432	4.163	3.156	4.308	1.296	2.251	1.035	nan	0.809	0.400	4.499
15210	chr9	65519543	65530339	+	0	NA	Intergenic	B1F|SINE|Alu	55146	NM_153119	102595	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	6.668	2.160	1.352	6.100	5.530	4.167	4.192	4.814	4.565	5.369	2.449	1.692	5.351	7.692	nan	5.944	5.138	5.821	nan	3.019	2.460	2.101	2.292	2.031	6.527
14239	chr8	60070628	60073954	+	0	NA	Intergenic	Intergenic	246642	NR_126087	75017	Mm.60775	NR_126087	ENSMUSG00000110406	4930470O06Rik	-	RIKEN cDNA 4930470O06 gene	ncRNA	5.836	2.296	1.198	1.983	3.054	2.093	2.637	6.313	3.823	2.942	1.733	1.185	4.599	3.167	2.639	3.379	5.061	3.989	2.811	1.263	1.296	1.384	2.380	1.531	2.206
10779	chr4	138534591	138536097	+	0	NA	Intergenic	Intergenic	80196	NM_025451	66259	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding	2.401	0.448	0.197	2.609	1.795	0.707	2.981	0.959	nan	1.270	0.329	0.450	2.222	3.897	2.268	2.383	0.655	nan	1.422	0.538	0.591	1.927	nan	0.723	5.009
8804	chr2	151795130	151806398	+	0	NA	Intergenic	Intergenic	-42163	NM_001040689	228770	Mm.159868	NM_001040689	ENSMUSG00000032852	Rspo4	A730099F22|A930029K19Rik	R-spondin 4	protein-coding	7.223	3.450	0.842	5.807	2.790	1.523	6.495	9.372	4.113	4.933	6.153	2.866	7.237	7.312	6.781	10.443	6.436	7.887	nan	1.899	1.613	4.348	1.879	1.358	12.165
11163	chr5	35340825	35343607	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	-19337	NR_046060	74429	Mm.399502	NR_046060	ENSMUSG00000106762	4930478P22Rik	4933405A14Rik	RIKEN cDNA 4930478P22 gene	ncRNA	2.057	2.717	1.271	2.442	1.190	0.846	1.258	2.798	1.804	1.042	10.257	4.835	0.827	1.574	nan	1.265	nan	1.834	0.887	0.537	0.357	1.014	0.219	0.333	1.358
3861	chr13	20188642	20191755	+	0	NA	intron (NM_080288, intron 2 of 21)	RMER15|LTR|ERVL	99691	NM_080288	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	3.414	2.915	1.866	2.457	0.805	0.261	1.439	1.927	2.310	1.923	1.067	0.907	1.310	2.387	1.923	3.011	nan	2.707	5.785	3.244	1.610	5.074	4.616	3.278	nan
11659	chr5	122040945	122044903	+	0	NA	intron (NM_001312908, intron 2 of 22)	intron (NM_001312908, intron 2 of 22)	4901	NM_007804	13048	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2|ENSMUSG00000072641	cut-like homeobox 2	protein-coding	7.097	4.409	1.000	10.169	2.229	2.006	6.810	8.260	4.980	7.799	3.289	2.438	7.199	8.400	8.348	9.999	5.517	7.662	nan	nan	1.714	1.578	nan	1.199	10.872
5649	chr15	99676539	99678274	+	0	NA	intron (NM_009597, intron 3 of 11)	intron (NM_009597, intron 3 of 11)	6688	NM_009597	11419	Mm.440107	NM_009597	ENSMUSG00000023017	Asic1	AI843610|ASIC|ASIC1a|Accn2|B530003N02Rik|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding	3.473	1.335	0.886	4.629	1.813	0.640	2.726	6.027	3.103	1.952	2.410	3.789	6.085	4.246	4.059	nan	4.012	3.163	2.673	1.170	0.424	2.139	2.705	1.067	2.493
14759	chr8	126284703	126288260	+	0	NA	Intergenic	Intergenic	-12098	NM_175434	210027	Mm.405238	NM_175434	ENSMUSG00000057060	Slc35f3	B230375D17Rik	solute carrier family 35, member F3	protein-coding	3.433	nan	0.430	3.024	2.269	1.182	2.654	4.029	1.943	2.506	2.138	1.340	4.471	5.237	4.887	4.465	2.217	3.134	nan	1.306	0.790	5.706	0.541	nan	4.723
4383	chr13	109018385	109021401	+	0	NA	intron (NM_011056, intron 2 of 16)	intron (NM_011056, intron 2 of 16)	-304851	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	nan	nan	0.260	1.535	2.942	1.547	5.069	6.755	2.865	2.743	1.588	2.466	4.524	6.210	5.430	5.138	2.792	2.706	1.422	1.435	0.667	nan	1.721	0.702	3.057
15626	chr9	122244875	122249267	+	0	NA	intron (NM_001271873, intron 11 of 12)	intron (NM_001271873, intron 11 of 12)	26957	NR_106185	102465896		NR_106185	ENSMUSG00000098922	Mir8106	Gm27594|mmu-mir-8106	microRNA 8106	ncRNA	2.619	0.709	0.621	1.470	0.780	0.559	2.932	6.547	2.437	2.279	2.596	1.770	3.566	3.042	2.999	5.036	3.733	2.469	1.322	1.352	1.312	1.196	nan	1.541	2.078
11623	chr5	117580095	117590921	+	0	NA	intron (NM_001312914, intron 4 of 19)	intron (NM_001312914, intron 4 of 19)	171506	NM_001312914	333050	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	8.773	5.069	2.447	6.269	6.085	3.566	10.629	6.349	6.643	9.057	4.965	2.247	9.357	11.506	9.553	9.613	8.403	8.424	nan	nan	1.314	0.920	nan	0.741	9.435
2163	chr11	51448560	51452011	+	0	NA	intron (NM_153393, intron 2 of 28)	L1MB4|LINE|L1	-134472	NM_028398	72947	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	7.678	9.436	3.408	8.142	6.561	4.567	6.076	6.495	5.278	7.431	7.237	3.653	5.638	8.218	6.907	7.532	5.737	7.233	nan	4.841	3.278	nan	nan	4.465	7.789
13591	chr7	117914389	117918499	+	0	NA	Intergenic	Intergenic	199703	NM_170669	267019	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	9.781	2.205	1.333	5.801	5.478	3.426	7.192	12.663	3.185	4.219	3.886	2.222	6.267	7.896	4.862	3.366	6.324	4.167	4.627	4.031	3.247	5.106	5.892	4.064	9.403
2214	chr11	54587955	54592978	+	0	NA	intron (NM_175258, intron 6 of 27)	intron (NM_175258, intron 6 of 27)	-5680	NM_001252498	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	3.669	9.888	4.942	3.856	3.137	1.771	1.358	1.512	2.351	2.387	0.928	1.083	1.047	nan	1.831	1.924	1.592	2.842	nan	3.814	1.824	2.299	2.710	1.850	nan
12843	chr6	145272761	145281778	+	0	NA	Intergenic	Intergenic	26717	NR_045598	100039495	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	OTTMUSG00000025463	predicted gene 15706	ncRNA	nan	0.776	0.683	nan	1.512	1.012	4.228	nan	2.932	nan	0.780	0.637	nan	7.912	5.303	nan	5.036	3.294	0.721	nan	0.716	nan	0.453	0.442	nan
10307	chr4	99778272	99781734	+	0	NA	intron (NM_026348, intron 7 of 8)	L1_Rod|LINE|L1	49115	NM_026348	67733	Mm.257094	NM_026348	ENSMUSG00000028549	Itgb3bp	4930471O16Rik|AU022583	integrin beta 3 binding protein (beta3-endonexin)	protein-coding	2.978	nan	0.343	1.849	1.212	0.396	2.306	1.522	nan	3.510	0.392	0.388	2.757	2.332	nan	4.376	2.040	3.331	2.131	6.139	2.737	3.043	1.663	1.311	5.104
11127	chr5	32270860	32273456	+	0	NA	intron (NM_001081407, intron 7 of 58)	intron (NM_001081407, intron 7 of 58)	33074	NM_001081407	665270	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	1.151	0.442	0.496	nan	1.260	1.108	0.776	2.401	1.607	1.447	0.863	1.290	0.649	1.083	0.752	0.787	0.807	0.900	2.840	1.653	1.323	2.098	5.286	4.685	0.609
6566	chr17	34421948	34445507	+	0	NA	intron (NM_001001177, intron 6 of 19)	MTB|LTR|ERVL-MaLR	34907	NM_001163855	407788	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	6.415	14.913	9.032	3.578	2.603	1.270	6.083	4.628	3.227	4.032	0.727	0.732	6.593	6.013	5.007	6.943	6.080	5.447	0.785	1.522	1.022	0.401	0.509	0.381	6.422
12615	chr6	115262004	115269596	+	0	NA	intron (NM_001111015, intron 10 of 12)	intron (NM_001111015, intron 10 of 12)	-13951	NM_080639	110595	Mm.255607	NM_080639	ENSMUSG00000030317	Timp4	TIMP-4	tissue inhibitor of metalloproteinase 4	protein-coding	3.258	0.750	0.497	1.676	2.072	1.118	8.653	8.866	3.045	2.262	4.196	3.137	6.603	7.367	6.965	10.380	6.929	4.528	1.474	0.894	0.782	1.425	nan	0.697	4.132
6907	chr17	84469415	84475288	+	0	NA	Intergenic	ID_B1|SINE|B4	-6143	NM_183021	240174	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	5.612	2.389	1.336	4.236	2.553	1.405	3.463	3.328	nan	3.976	5.589	3.778	2.413	4.574	2.985	2.922	2.133	3.026	1.228	1.621	1.209	0.990	1.114	0.918	4.235
15290	chr9	72379042	72380943	+	0	NA	Intergenic	Intergenic	-58537	NM_008613	17427	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	7.876	19.842	5.991	8.788	5.186	3.229	5.811	6.160	3.340	13.018	7.441	3.891	4.901	7.453	7.189	8.633	5.379	6.595	5.259	4.315	5.406	6.280	5.654	6.903	15.902
14751	chr8	125909058	125919821	+	0	NA	intron (NM_145608, intron 1 of 9)	intron (NM_145608, intron 1 of 9)	3989	NM_145608	234878	Mm.216458	NM_145608	ENSMUSG00000031853	Map3k21	Mlk4|mKIAA1804	mitogen-activated protein kinase kinase kinase 21	protein-coding	0.874	nan	0.598	nan	0.504	0.265	nan	nan	0.849	0.640	0.411	0.299	0.739	0.796	nan	1.218	0.716	nan	nan	2.898	3.102	10.100	1.274	nan	nan
6625	chr17	43311954	43314022	+	0	NA	intron (NM_133776, intron 12 of 15)	(TG)n|Simple_repeat|Simple_repeat	42641	NM_133776	77596	Mm.159950	NM_133776	ENSMUSG00000041293	Adgrf1	5031409J19Rik|Gpr110|KPG_009	adhesion G protein-coupled receptor F1	protein-coding	3.846	0.492	0.247	1.240	0.983	0.815	5.721	4.702	3.376	2.014	2.210	4.340	3.695	nan	4.373	2.929	nan	3.570	1.970	0.836	0.939	1.639	1.968	2.415	2.467
8571	chr2	119125818	119126986	+	0	NA	intron (NM_011234, intron 5 of 9)	intron (NM_011234, intron 5 of 9)	13585	NM_011234	19361	Mm.330492	NM_011234	ENSMUSG00000027323	Rad51	AV304093|Rad51a|Reca	RAD51 recombinase	protein-coding	5.104	6.738	1.191	8.784	1.094	0.652	2.524	5.815	2.833	3.222	1.653	1.050	2.766	3.011	3.411	4.305	3.221	6.005	2.071	1.721	1.181	6.636	2.457	1.716	6.652
12703	chr6	125316580	125319439	+	0	NA	Intergenic	Intergenic	-3331	NM_011324	20276	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	4.146	nan	0.795	1.925	2.333	1.226	6.574	5.491	2.004	2.326	3.296	1.564	5.486	6.543	4.887	6.539	5.986	2.857	1.071	1.361	1.140	0.942	0.947	0.648	5.704
12335	chr6	73171850	73173640	+	0	NA	intron (NM_001164669, intron 15 of 76)	intron (NM_001164669, intron 15 of 76)	48886	NM_001164669	330355	Mm.333166	NM_001164669	ENSMUSG00000052861	Dnah6	9830168K20|A730004I20Rik|Dnahc6|mKIAA1697|mdhc6	dynein, axonemal, heavy chain 6	protein-coding	4.196	2.301	1.076	4.696	3.931	2.483	3.652	7.722	3.733	4.688	0.857	1.238	6.118	5.461	6.500	8.252	5.431	3.988	1.253	0.792	1.272	1.478	1.382	0.412	4.517
14218	chr8	47913312	47917797	+	0	NA	intron (NM_133791, intron 2 of 22)	B1F2|SINE|Alu	74997	NM_133791	52357	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	6.333	2.197	0.901	3.558	3.026	1.789	6.280	9.849	5.001	4.475	3.659	3.871	10.672	7.783	8.983	10.766	6.514	6.196	3.007	2.362	1.194	6.641	2.327	1.392	8.513
10443	chr4	118946016	118949835	+	0	NA	Intergenic	L1VL4|LINE|L1	6994	NR_137285	100038571	Mm.426714	NR_137285	ENSMUSG00000073765	Gm12863	OTTMUSG00000008822	predicted gene 12863	ncRNA	4.333	1.399	0.832	5.837	4.169	2.554	1.303	2.967	4.143	2.823	3.693	2.602	2.132	2.861	2.620	3.194	1.092	5.020	1.311	0.991	1.059	1.587	0.831	0.887	3.153
15018	chr9	44329443	44336966	+	0	NA	3' UTR (NM_007875, exon 9 of 9)	3' UTR (NM_007875, exon 9 of 9)	-1511	NM_010436	15270	Mm.245931	NM_010436	ENSMUSG00000049932	H2afx	AW228881|H2A.X|H2ax|Hist5-2ax|gammaH2ax	H2A histone family, member X	protein-coding	0.672	13.460	6.431	1.091	0.634	0.164	0.425	0.496	0.853	0.989	0.571	0.362	0.350	0.382	nan	nan	0.431	0.933	0.582	1.043	0.652	nan	0.327	0.597	nan
9134	chr3	8987741	8989185	+	0	NA	intron (NM_001025263, intron 1 of 6)	B2_Mm1a|SINE|B2	16052	NM_009412	21985	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	5.038	1.560	1.156	2.334	3.135	2.237	10.119	5.701	4.297	2.767	6.153	3.536	5.580	3.426	4.727	4.570	4.766	4.523	3.012	2.796	2.204	1.451	3.541	3.680	2.253
6582	chr17	35179188	35190216	+	0	NA	TTS (NM_010734)	TTS (NM_010734)	3738	NM_010734	16988	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	11.830	12.838	7.709	8.036	7.752	4.530	12.677	9.202	6.589	8.219	10.069	5.879	8.206	11.533	9.651	9.904	9.795	8.060	5.344	6.107	4.214	5.010	7.263	5.418	11.623
1941	chr11	6076731	6079426	+	0	NA	Intergenic	Intergenic	-12330	NM_007595	12323	Mm.439733	NM_007595	ENSMUSG00000057897	Camk2b	CaMKII	calcium/calmodulin-dependent protein kinase II, beta	protein-coding	2.651	11.945	6.291	2.062	1.380	0.554	0.827	1.010	1.550	2.011	1.000	1.120	0.877	1.186	1.521	1.638	1.552	1.785	1.403	nan	0.910	2.547	1.334	0.573	1.575
4008	chr13	40812500	40816311	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-45363	NM_023887	14538	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0.640	nan	1.758	0.411	0.586	0.340	nan	nan	nan	nan	7.694	3.008	1.442	0.625	0.242	nan	0.277	nan	0.448	0.432	0.314	0.265	0.398	0.134	nan
10288	chr4	97437742	97448690	+	0	NA	Intergenic	Lx3C|LINE|L1	-138727	NM_001122952	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	8.423	nan	1.829	7.362	4.743	2.561	7.151	6.168	nan	11.528	5.551	3.585	7.439	8.746	nan	8.407	6.270	8.667	2.227	2.048	1.750	nan	1.214	1.070	9.869
2826	chr11	102170078	102174701	+	0	NA	intron (NM_172947, intron 2 of 4)	intron (NM_172947, intron 2 of 4)	12867	NM_172947	268490	Mm.259079	NM_172947	ENSMUSG00000020922	Lsm12	1110032E16Rik|1110059P07|2600001B17Rik	LSM12 homolog	protein-coding	2.005	8.283	2.171	3.011	1.572	0.686	4.833	5.277	1.393	2.525	1.044	1.113	2.601	4.168	5.766	4.968	nan	3.885	1.213	nan	0.613	1.614	nan	nan	3.712
9637	chr3	104243567	104246407	+	0	NA	Intergenic	MIR|SINE|MIR	-24581	NM_001159354	99470	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding	6.616	1.699	1.010	4.519	4.562	2.868	8.518	6.297	5.547	7.611	2.734	1.787	8.714	10.392	6.423	8.034	6.438	7.564	3.928	2.519	1.845	3.966	4.847	4.533	10.198
11665	chr5	122297874	122309513	+	0	NA	intron (NM_177242, intron 1 of 5)	intron (NM_177242, intron 1 of 5)	19295	NM_177242	320717	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	3.910	1.584	0.842	4.812	3.126	2.521	5.162	6.702	3.838	6.460	2.563	2.392	5.322	8.824	5.532	6.379	3.796	5.226	nan	nan	1.267	2.213	nan	1.877	6.264
15257	chr9	69912642	69915207	+	0	NA	Intergenic	Intergenic	-75542	NM_016787	12175	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	0.579	0.654	0.761	0.459	0.512	0.382	1.026	1.416	0.759	0.454	0.490	1.027	0.208	0.534	nan	0.388	0.763	0.479	3.174	2.672	2.033	2.403	5.964	7.441	0.467
9281	chr3	51643481	51645413	+	0	NA	Intergenic	Intergenic	-16732	NM_174995	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	1.521	0.658	0.583	2.500	2.206	0.734	2.628	2.692	2.614	3.058	3.376	2.512	2.549	3.939	2.536	3.065	1.793	3.774	2.709	2.181	1.192	4.891	1.036	0.620	2.140
6648	chr17	45693415	45695384	+	0	NA	intron (NM_026732, intron 1 of 2)	intron (NM_026732, intron 1 of 2)	8027	NM_026732	68463	Mm.379158	NM_026732	ENSMUSG00000023939	Mrpl14	1110006I11Rik|AI846816|MRP-L32|Rpml32	mitochondrial ribosomal protein L14	protein-coding	3.870	22.850	7.876	4.561	3.321	1.172	1.833	1.099	2.116	3.620	2.371	1.793	1.077	1.862	2.354	2.905	2.483	2.684	3.205	3.043	2.114	3.580	1.415	1.328	3.584
4895	chr14	79880184	79884528	+	0	NA	Intergenic	Intergenic	-13180	NR_033535	100038734	Mm.387484	NR_033535		Gm10845	ENSMUSG00000075496	predicted gene 10845	ncRNA	10.639	11.419	3.428	13.035	7.510	5.612	9.285	13.386	7.542	15.426	9.016	5.176	9.301	12.398	12.333	13.019	7.907	11.764	5.132	2.923	4.120	5.731	5.272	7.322	18.412
14284	chr8	72425123	72427592	+	0	NA	intron (NM_028500, intron 7 of 8)	B3A|SINE|B2	-4883	NM_001289859	13859	Mm.288894	NM_007944	ENSMUSG00000006276	Eps15l1	9830147J04Rik|AI593686|Eps15-rs|Eps15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding	7.750	17.281	3.649	11.669	1.830	1.050	5.631	10.247	7.102	9.680	7.820	4.308	10.709	8.356	13.281	15.344	7.402	11.166	nan	1.672	2.446	11.714	1.697	2.950	21.030
2132	chr11	48666489	48670709	+	0	NA	Intergenic	Intergenic	-131761	NM_008143	14694	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	4.289	8.178	2.268	5.644	2.383	0.842	3.047	4.467	3.609	4.351	3.753	1.813	3.802	6.347	5.710	6.115	3.772	5.003	nan	1.650	0.632	2.870	nan	0.784	4.319
13587	chr7	117757417	117759200	+	0	NA	Intergenic	Eulor6A|DNA?|DNA?	357839	NM_170669	267019	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	7.939	8.538	2.458	11.538	4.520	4.052	7.719	11.245	4.854	13.754	7.181	5.541	6.686	7.797	8.221	9.635	5.505	9.144	5.412	1.840	4.055	7.163	3.501	7.791	16.959
7243	chr18	54771929	54773772	+	0	NA	Intergenic	Intergenic	161106	NR_045400	328957	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA	2.496	nan	0.770	2.737	2.058	1.033	3.111	2.744	3.087	2.657	2.786	1.900	5.334	5.437	4.021	3.348	3.198	3.984	3.354	1.176	0.569	nan	4.694	3.022	nan
8078	chr2	29978942	29981293	+	0	NA	exon (NM_001177668, exon 3 of 56)	exon (NM_001177668, exon 3 of 56)	14557	NM_001309460	20740	Mm.204969	NM_001076554	ENSMUSG00000057738	Sptan1	2610027H02Rik|Spna-2|Spna2	spectrin alpha, non-erythrocytic 1	protein-coding	7.521	9.273	3.132	7.575	3.749	2.081	5.211	8.744	nan	6.501	3.959	2.614	6.788	7.364	7.269	9.961	6.664	7.939	4.477	2.792	2.278	6.335	3.490	2.398	11.206
14491	chr8	97051673	97052976	+	0	NA	Intergenic	L1_Mur2|LINE|L1	-506351	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	3.015	0.929	0.397	1.990	3.011	1.140	1.827	2.703	1.790	2.021	0.707	0.347	3.398	4.376	2.970	3.733	2.627	2.401	0.635	0.327	0.702	0.687	0.277	0.361	4.893
15604	chr9	120881876	120882932	+	0	NA	Intergenic	Intergenic	32846	NR_040742	76402	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	2.282	1.193	0.299	2.264	2.220	0.876	3.178	1.740	2.851	2.206	0.588	1.124	1.957	3.440	2.818	3.069	0.912	3.441	1.442	0.785	0.186	0.758	nan	0.544	3.198
14083	chr8	25538336	25541874	+	0	NA	intron (NM_001079909, intron 2 of 16)	intron (NM_001079909, intron 2 of 16)	15978	NR_110510	102633315	Mm.437828	NR_110510	ENSMUSG00000086134	Gm16159	OTTMUSG00000031030	predicted gene 16159	ncRNA	1.619	nan	0.360	1.814	0.341	0.139	2.114	1.866	1.856	1.581	7.071	5.657	1.383	1.903	4.573	2.335	1.237	2.511	0.633	0.390	0.053	nan	0.173	0.161	1.092
12344	chr6	82769527	82772826	+	0	NA	intron (NM_013820, intron 1 of 17)	intron (NM_013820, intron 1 of 17)	3278	NM_013820	15277	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	6.671	1.272	0.780	3.192	7.113	6.494	8.931	12.285	6.283	9.464	5.194	4.632	9.378	14.424	9.547	8.988	8.017	6.218	2.840	1.364	1.283	1.982	1.266	1.510	6.855
12738	chr6	128482447	128484799	+	0	NA	TTS (NM_007376)	TTS (NM_007376)	43097	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	5.569	nan	0.319	2.731	1.554	0.820	5.354	9.461	4.476	4.816	0.650	1.520	6.331	6.349	7.806	10.222	9.316	5.656	0.930	0.643	0.594	0.799	0.862	0.265	3.159
6994	chr18	4992905	4997964	+	0	NA	Intergenic	Intergenic	-51155	NM_153153	225115	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	2.948	1.282	0.511	3.469	2.658	1.134	2.702	2.379	3.128	3.203	1.217	0.887	3.861	3.178	3.598	4.274	2.678	3.793	7.260	3.628	1.708	5.467	9.092	5.863	3.216
5180	chr15	55095961	55100027	+	0	NA	Intergenic	ORR1D1|LTR|ERVL-MaLR	-7516	NM_183089	72107	Mm.486550	NM_183089	ENSMUSG00000022422	Dscc1	2010006I05Rik|2600005O03Rik|Dcc1	DNA replication and sister chromatid cohesion 1	protein-coding	8.084	0.826	0.583	3.073	1.851	0.970	9.636	11.396	3.538	4.163	1.884	1.445	10.048	6.609	6.778	5.907	9.566	5.674	1.569	1.268	1.221	1.092	4.497	3.158	5.922
10343	chr4	106580042	106589957	+	0	NA	intron (NM_053272, intron 6 of 8)	intron (NM_053272, intron 6 of 8)	23961	NM_053272	74754	Mm.133370	NM_053272	ENSMUSG00000034926	Dhcr24	2310076D10Rik|5830417J06Rik|mKIAA0018	24-dehydrocholesterol reductase	protein-coding	4.844	6.435	2.757	4.086	2.099	1.403	4.386	4.584	2.675	5.822	3.555	1.881	3.648	5.637	4.307	4.629	3.450	nan	5.967	5.107	4.881	9.153	4.485	4.781	7.450
6115	chr16	50429693	50431815	+	0	NA	intron (NM_001347240, intron 1 of 16)	intron (NM_001347240, intron 1 of 16)	1635	NM_027444	70508	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	11.368	7.640	4.420	4.571	5.264	3.303	4.158	9.789	2.316	5.873	4.243	2.023	3.969	4.396	4.008	6.528	6.564	5.019	4.427	4.956	5.172	3.825	6.863	6.678	9.775
3751	chr12	113133249	113139046	+	0	NA	intron (NM_001346696, intron 18 of 19)	intron (NM_001346696, intron 18 of 19)	-4089	NM_024223	68337	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	5.212	1.517	0.854	5.016	2.827	1.454	2.761	4.208	3.371	3.195	1.901	1.380	3.823	4.111	3.175	nan	4.492	3.775	3.479	4.022	2.698	4.374	3.883	2.391	nan
13565	chr7	116878306	116885780	+	0	NA	Intergenic	RLTR17B_Mm|LTR|ERVK	377674	NM_001130479	53322	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	6.597	1.915	0.981	2.498	1.412	0.778	6.665	6.498	3.693	4.129	4.462	4.277	10.734	4.372	5.452	5.992	7.888	4.504	1.561	0.978	0.490	1.212	0.940	0.446	4.967
13811	chr7	137729748	137731477	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	292938	NR_033611	620016	Mm.388932	NR_033611	ENSMUSG00000100863	Gm12669	OTTMUSG00000007920	glutaredoxin 3 pseudogene	pseudo	3.594	nan	0.527	2.933	3.370	3.424	2.690	2.919	nan	4.448	0.823	0.447	4.304	6.532	2.371	3.495	4.290	4.271	0.834	1.477	1.074	1.122	1.036	0.898	1.975
14220	chr8	47951455	47956305	+	0	NA	intron (NM_133791, intron 1 of 22)	B1_Mus1|SINE|Alu	36671	NM_133791	52357	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	7.990	2.689	1.586	4.669	5.780	2.757	5.582	9.001	5.809	6.476	8.257	5.236	9.486	10.335	7.060	8.338	7.045	6.880	1.215	1.756	1.232	1.158	1.252	0.771	6.543
5674	chr15	100354757	100356232	+	0	NA	intron (NM_001024672, intron 1 of 3)	RLTR22_Mur|LTR|ERVK	2294	NM_199477	393082	Mm.268451	NM_199477	ENSMUSG00000056487	Mettl7a2	Gm921|UbiE2|Ubie	methyltransferase like 7A2	protein-coding	2.108	0.668	0.426	1.105	2.526	1.868	3.735	5.262	1.139	1.700	0.622	0.320	4.106	4.114	3.654	3.225	3.400	2.824	0.709	0.459	0.447	0.548	0.692	0.386	2.006
10500	chr4	123426004	123428301	+	0	NA	intron (NM_001199136, intron 57 of 97)	URR1A|DNA|hAT-Charlie	-15241	NM_001167918	442834	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	7.146	12.036	4.022	7.259	3.660	2.713	4.221	4.818	5.050	8.518	5.485	4.559	4.777	6.026	7.229	7.959	3.764	7.721	7.210	3.591	2.932	8.422	5.418	5.037	11.848
550	chr1	128513186	128515564	+	0	NA	Intergenic	Intergenic	77924	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	5.810	nan	0.454	3.217	2.465	1.192	3.877	1.629	3.700	3.380	0.930	0.621	5.421	4.299	3.700	7.454	4.080	6.517	nan	0.245	0.412	0.408	0.332	0.083	4.283
7331	chr18	65251356	65258357	+	0	NA	intron (NR_105742, intron 4 of 6)	intron (NR_105742, intron 4 of 6)	5995	NR_029600	387231		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	7.100	0.750	0.539	4.324	2.740	1.046	4.791	5.751	4.382	6.085	2.564	0.691	6.064	8.284	4.339	7.330	4.560	8.783	0.816	0.692	0.296	0.780	0.626	0.423	7.781
2083	chr11	34580351	34590322	+	0	NA	intron (NM_033374, intron 22 of 51)	intron (NM_033374, intron 22 of 51)	198569	NM_033374	94176	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	nan	11.125	4.625	2.260	1.089	0.384	0.566	0.383	0.783	1.110	0.752	0.300	0.434	0.813	0.889	nan	0.807	nan	0.606	1.314	0.836	0.515	1.723	1.043	1.179
12858	chr6	146650495	146651616	+	0	NA	TTS (NM_025315)	TTS (NM_025315)	-3253	NR_038089	626175	Mm.391544	NM_001178001		Gm6654	EG626175	predicted pseudogene 6654	pseudo	1.492	1.996	0.426	nan	1.085	0.321	3.373	3.247	1.678	1.402	4.243	2.907	3.999	4.562	3.173	3.834	1.550	2.055	2.441	nan	0.365	4.026	0.712	0.671	1.674
9916	chr4	8789308	8806079	+	0	NA	intron (NM_001277149, intron 3 of 37)	intron (NM_001277149, intron 3 of 37)	107287	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.515	1.073	0.662	0.545	0.351	0.154	0.291	nan	0.513	0.450	0.457	0.300	0.220	0.295	0.423	0.606	0.362	0.584	2.185	nan	1.901	7.483	1.915	1.414	0.565
10076	chr4	48283495	48290200	+	0	NA	intron (NM_010569, intron 2 of 16)	intron (NM_010569, intron 2 of 16)	7087	NM_001281977	16348	Mm.317706	NM_010569	ENSMUSG00000028344	Invs	Nphp2|inv	inversin	protein-coding	0.891	7.479	5.172	0.988	0.918	0.458	0.323	1.023	1.894	1.244	0.847	1.424	0.594	0.801	0.636	1.049	0.976	nan	1.097	0.621	0.439	nan	0.577	0.417	0.519
11858	chr5	138227234	138228882	+	0	NA	intron (NM_001013773, intron 1 of 5)	B2_Mm2|SINE|B2	2154	NM_001013773	381680	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	13.636	15.909	5.195	12.502	12.149	5.281	11.990	10.695	6.960	13.351	8.953	4.462	9.967	17.089	11.604	11.720	11.804	8.211	7.556	6.586	6.439	7.480	7.944	8.704	14.831
12092	chr6	28408462	28410644	+	0	NA	Intergenic	Intergenic	12171	NM_028900	74375	Mm.332950	NM_028900	ENSMUSG00000029708	Gcc1	4932417P04Rik	golgi coiled coil 1	protein-coding	3.591	0.693	0.596	1.795	1.902	1.221	6.596	5.167	1.906	2.009	1.530	1.121	4.186	6.567	5.811	7.451	5.736	2.068	nan	0.447	0.551	0.429	0.554	0.684	3.722
6677	chr17	46753544	46762654	+	0	NA	intron (NM_011195, intron 2 of 3)	intron (NM_011195, intron 2 of 3)	5613	NM_011195	19208	Mm.215173	NM_011195	ENSMUSG00000036858	Ptcra	gp33|pT-alpha|pT-alpha-TCR|pT[a]|pTa|pTalpha	pre T cell antigen receptor alpha	protein-coding	2.922	0.731	0.313	3.656	1.638	0.791	2.606	4.871	2.801	3.242	7.191	4.207	1.868	3.475	3.615	5.445	nan	3.570	0.756	0.698	0.659	1.343	0.601	0.377	4.596
12633	chr6	117828702	117832722	+	0	NA	Intergenic	Intergenic	-10469	NM_177684	232337	Mm.290847	NM_177684	ENSMUSG00000059689	Zfp637	AI646709|BC021601|Znf32	zinc finger protein 637	protein-coding	6.423	15.332	7.789	8.377	4.548	2.408	9.287	9.947	4.797	6.614	4.437	2.942	10.791	12.948	10.263	10.513	7.352	7.769	5.550	3.263	2.387	4.830	nan	2.397	9.344
1736	chr10	111293116	111297657	+	0	NA	3' UTR (NM_001003717, exon 23 of 23)	3' UTR (NM_001003717, exon 23 of 23)	-3293	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	nan	0.372	0.374	0.806	0.785	0.673	1.551	2.169	2.299	1.276	5.159	5.747	1.421	1.127	1.170	1.226	1.248	1.566	0.734	0.657	0.594	0.568	0.921	0.878	0.803
958	chr1	182887599	182889814	+	0	NA	intron (NM_144796, intron 5 of 7)	intron (NM_144796, intron 5 of 7)	-66082	NM_016928	53791	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	3.114	2.525	1.164	3.320	2.008	1.330	5.105	4.748	3.040	3.434	2.557	1.663	5.242	6.826	4.135	3.929	2.182	3.650	1.700	1.684	2.183	2.927	0.954	0.797	2.580
13687	chr7	125736560	125738812	+	0	NA	intron (NM_001081022, intron 2 of 27)	MER2|DNA|TcMar-Tigger	29810	NM_001081022	233865	Mm.274389	NM_001081022	ENSMUSG00000032743	D430042O09Rik	Kiaa0556	RIKEN cDNA D430042O09 gene	protein-coding	1.569	0.458	0.198	2.161	1.084	0.636	2.580	7.383	2.463	2.143	1.120	1.602	5.565	3.664	3.057	3.016	1.585	2.908	0.845	0.303	0.381	1.453	0.680	0.391	2.789
12271	chr6	57652296	57654693	+	0	NA	intron (NM_025992, intron 16 of 22)	intron (NM_025992, intron 16 of 22)	38584	NM_025574	66459	Mm.44201	NM_025574	ENSMUSG00000043162	Pyurf	2610022G08Rik|AI847956|Prey	Pigy upstream reading frame	protein-coding	5.625	8.973	4.032	6.604	2.427	1.287	4.961	6.491	3.979	5.018	3.444	3.304	5.544	5.814	7.980	nan	5.727	7.375	nan	4.944	3.859	7.204	6.770	6.031	10.365
592	chr1	132782740	132784060	+	0	NA	Intergenic	Intergenic	-41603	NM_001160317	269116	Mm.326702	NM_182716	ENSMUSG00000026442	Nfasc	AA387016|D430023G06Rik|NF|mKIAA0756	neurofascin	protein-coding	3.492	1.125	0.565	1.148	3.068	1.739	2.230	3.429	2.824	3.102	5.415	1.530	3.337	3.639	2.984	3.445	3.061	2.257	nan	0.688		0.833	0.890	0.670	3.015
3299	chr12	39514846	39515935	+	0	NA	Intergenic	RLTR24B_MM|LTR|ERV1	521986	NM_007487	11861	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	10.531	nan	0.428	2.649	3.402	3.197	5.494	6.824	1.978	1.671	5.933	5.074	3.148	4.105	4.442	3.498	2.013	3.655	2.306	1.999	1.530	1.043	4.208	2.463	1.035
13675	chr7	123667043	123670088	+	0	NA	Intergenic	Intergenic	-168116	NM_001081329	210162	Mm.135397	NM_175435	ENSMUSG00000030757	Zkscan2	9430065N20Rik|AW493225|Zfp694	zinc finger with KRAB and SCAN domains 2	protein-coding	5.383	0.713	0.487	4.364	4.201	1.917	6.127	nan	5.728	5.621	2.776	1.320	9.673	7.580	8.191	7.385	7.029	7.343	2.768	1.266	0.527	2.166	2.257	1.599	4.735
4420	chr13	112844478	112845914	+	0	NA	intron (NM_008247, intron 2 of 5)	ORR1B1-int|LTR|ERVL-MaLR	44419	NM_008247	19012	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	2.282	nan	0.078	1.006	1.505	0.709	3.229	4.639	nan	1.820	5.292	1.314	2.563	3.946	3.274	3.803	1.517	nan	0.845	0.599	0.688	nan	0.876	0.586	2.235
12026	chr6	4997100	5000918	+	0	NA	intron (NM_181595, intron 2 of 15)	intron (NM_181595, intron 2 of 15)	95689	NM_181595	243725	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	3.771	0.612	0.740	3.625	6.891	4.695	7.346	5.463	5.861	5.686	0.759	0.901	8.137	9.302	7.204	8.680	7.590	6.544	0.712	0.581	0.339	0.614	0.489	0.445	3.765
10311	chr4	100073356	100075022	+	0	NA	Intergenic	ID_B1|SINE|B4	-21602	NM_013845	26563	Mm.57252	NM_013845	ENSMUSG00000035305	Ror1	2810404D04Rik|Ntrkr1	receptor tyrosine kinase-like orphan receptor 1	protein-coding	3.125	1.020	0.247	4.731	2.324	0.421	1.235	2.035	2.270	3.592	1.670	1.342	3.226	3.745	3.372	4.739	1.661	4.231	1.148	0.965	0.529	nan	0.419	0.228	5.308
10236	chr4	86355872	86361257	+	0	NA	intron (NM_029967, intron 19 of 27)	(TG)n|Simple_repeat|Simple_repeat	199739	NM_001081096	75811	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	4.744	nan	1.244	3.661	5.538	4.661	2.658	5.716	nan	3.706	5.847	5.241	2.874	4.731	3.554	3.703	2.781	nan	0.940	nan	0.900	2.393	0.831	0.843	nan
1978	chr11	11662433	11664176	+	0	NA	Intergenic	Intergenic	-22621	NM_009578	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	nan	8.922	4.807	1.686	0.742	0.499	0.634	0.477	0.865	1.133	0.784	0.116	0.476	0.779	0.752	1.161	0.688	1.102	0.830	nan	0.406	0.331	0.582	0.188	0.817
10153	chr4	62258224	62260391	+	0	NA	Intergenic	Intergenic	-27122	NM_025286	20530	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	1.640	nan	1.207	1.338	2.242	1.665	nan	0.786	1.651	1.925	0.953	2.165	1.620	3.799	0.808	0.908	0.847	1.544	nan	1.471	1.764	1.597	0.900	0.883	2.267
7362	chr18	69574084	69578845	+	0	NA	intron (NM_013685, intron 8 of 19)	intron (NM_013685, intron 8 of 19)	230743	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	5.648	1.934	0.732	6.156	2.835	2.120	1.793	1.928	4.216	3.932	2.457	2.530	2.926	3.274	3.117	3.104	2.159	4.617	3.667	2.600	1.279	4.126	2.314	1.879	2.274
10231	chr4	83130714	83134179	+	0	NA	Intergenic	L1Md_T|LINE|L1	-80279	NM_001198811	329872	Mm.242337	NM_177863	ENSMUSG00000059049	Frem1	BC037594|D430009N09|D630008K06|crf11|eye<m02Jus>|eyes2|heb|qbrick	Fras1 related extracellular matrix protein 1	protein-coding	2.499	8.522	3.717	3.345	1.864	1.666	1.989	nan	nan	4.767	1.930	1.048	1.923	2.348	2.615	3.438	2.111	nan	8.328	nan	8.182	14.915	6.598	6.556	nan
1640	chr10	94797595	94799919	+	0	NA	intron (NM_018797, intron 26 of 30)	intron (NM_018797, intron 26 of 30)	109967	NM_029852	77048	Mm.296971	NM_029852	ENSMUSG00000020024	Cep83	2600001G24Rik|4921537D05Rik|5730513H21Rik|Ccdc41	centrosomal protein 83	protein-coding	4.310	0.440	0.602	2.019	2.253	0.897	3.901	2.394	3.750	3.093	nan	1.606	2.128	3.570	3.236	2.542	2.341	3.949	nan	0.741	0.158	nan	1.111	0.820	2.831
10477	chr4	122560795	122564932	+	0	NA	Intergenic	RMER13B|LTR|ERVK	-126396	NM_023865	77432	Mm.491436	NM_023865	ENSMUSG00000023263	9530002B09Rik	Aump|Vpp1|Vppl	RIKEN cDNA 9530002B09 gene	protein-coding	11.658	12.998	5.483	9.019	6.132	3.011	6.042	6.281	6.184	8.079	7.421	3.573	5.940	9.343	7.445	7.763	4.641	8.323	6.400	8.046	6.584	7.765	3.307	2.416	12.235
11765	chr5	131984519	131987537	+	0	NA	intron (NM_177047, intron 4 of 18)	G-rich|Low_complexity|Low_complexity	105759	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA	2.409	0.330	0.335	2.598	5.288	4.126	2.438	5.726	4.608	4.910	1.297	1.251	2.128	4.907	nan	3.628	2.422	nan	nan	0.771	0.561	0.527	nan	0.895	nan
13785	chr7	135525871	135527743	+	0	NA	intron (NM_178669, intron 1 of 2)	intron (NM_178669, intron 1 of 2)	1847	NM_178669	212070	Mm.39721	NM_178669	ENSMUSG00000050866	Clrn3	AI649392|Tmem12	clarin 3	protein-coding	2.462	10.488	6.728	1.531	1.515	0.793	1.662	0.858	nan	1.604	1.042	0.841	1.792	1.756	1.184	1.721	2.543	2.060	0.889	0.774	1.214	0.848	0.318	0.585	1.697
8512	chr2	104364688	104367690	+	0	NA	intron (NM_001033347, intron 1 of 20)	MTE2a|LTR|ERVL-MaLR	44145	NM_001033347	241589	Mm.358909	NM_001033347	ENSMUSG00000068373	D430041D05Rik	9630056G07Rik|G2	RIKEN cDNA D430041D05 gene	protein-coding	6.783	1.689	1.333	2.226	2.631	1.698	4.356	7.529	2.032	2.565	0.922	0.910	6.466	6.629	4.400	3.943	7.960	3.861	1.221	1.151	0.879	nan	0.913	0.894	4.565
8262	chr2	59005416	59011919	+	0	NA	intron (NM_001001178, intron 3 of 13)	intron (NM_001001178, intron 3 of 13)	9939	NM_001001178	227933	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09	coiled-coil domain containing 148	protein-coding	2.922	1.218	0.723	3.401	1.928	1.126	0.867	nan	3.535	2.762	4.509	4.518	2.103	1.862	1.984	2.166	2.937	3.445	3.292	2.492	1.668	3.534	3.023	2.612	2.316
15365	chr9	86576822	86579473	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	6094	NM_027100	69519	Mm.272517	NM_027100	ENSMUSG00000032417	Rwdd2a	1700030C20Rik|AI848608|Rwdd2	RWD domain containing 2A	protein-coding	3.558	0.654	0.325	1.754	0.399	0.314	3.014	3.783	4.776	5.540	1.541	0.972	6.299	3.607	3.608	4.698	4.471	3.678	1.950	0.614	0.412	0.726	1.315	0.656	5.602
7280	chr18	60640165	60643211	+	0	NA	Intergenic	Intergenic	-17383	NM_177340	104027	Mm.252321	NM_177340	ENSMUSG00000043079	Synpo	9030217H17Rik|9130229N11|9330140I15Rik|AW046661	synaptopodin	protein-coding	4.593	1.088	0.639	3.687	2.919	0.851	2.851	nan	3.539	4.603	3.651	2.366	3.769	3.411	2.805	2.883	3.092	3.423	nan	1.278	0.578	nan	0.586	0.302	4.823
2026	chr11	22185870	22187865	+	0	NA	intron (NM_001252515, intron 5 of 24)	intron (NM_001252515, intron 5 of 24)	99928	NM_153078	216565	Mm.491265	NM_153078	ENSMUSG00000042302	Ehbp1	AF424697|Flj21950|NACSIN	EH domain binding protein 1	protein-coding	8.377	3.906	1.583	7.098	5.620	2.351	5.912	5.984	4.935	9.093	5.205	3.117	5.745	9.483	6.530	8.357	6.796	nan	5.939	4.613	3.251	7.914	7.152	6.087	9.456
9826	chr3	136331722	136335657	+	0	NA	Intergenic	Intergenic	-7623	NM_001033350	242248	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	10.441	11.332	3.735	11.854	7.699	6.074	12.891	8.456	6.623	13.948	8.420	5.768	9.383	11.422	9.512	10.184	7.570	10.204	6.443	3.900	5.150	6.717	5.304	6.687	16.178
8536	chr2	116910149	116914345	+	0	NA	non-coding (NR_040336, exon 3 of 3)	non-coding (NR_040336, exon 3 of 3)	12095	NR_040335	320975	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	3.808	0.694	0.421	1.866	1.628	0.907	5.380	5.447	2.813	3.135	2.435	1.033	5.789	5.976	4.921	6.147	3.285	4.025	0.671	1.086	0.389	0.996	0.719	0.487	4.487
8887	chr2	157217360	157224491	+	0	NA	intron (NM_001039557, intron 18 of 24)	intron (NM_001039557, intron 18 of 24)	-16391	NM_001139516	19650	Mm.244671	NM_011249	ENSMUSG00000027641	Rbl1	AW547426|PRB1|p107	retinoblastoma-like 1 (p107)	protein-coding	nan	2.315	1.222	2.834	4.016	2.807	4.824	3.987	nan	4.680	2.461	2.274	nan	5.689	3.938	6.492	5.025	6.653	nan	1.421	1.450	0.628	1.140	0.958	12.795
14421	chr8	87954512	87957138	+	0	NA	intron (NM_033327, intron 1 of 7)	intron (NM_033327, intron 1 of 7)	3770	NM_033327	94187	Mm.23452	NM_033327	ENSMUSG00000045333	Zfp423	Ebfaz|Roaz|Zfp104|Znf423|ataxia1|mKIAA0760|nur12	zinc finger protein 423	protein-coding	6.591	7.592	2.793	6.512	3.258	3.012	4.357	4.589	nan	6.586	4.046	1.886	5.215	5.244	5.101	6.136	4.487	4.971	nan	3.312	2.782	5.891	3.515	3.858	6.204
793	chr1	162188988	162197063	+	0	NA	intron (NM_001038619, intron 14 of 20)	intron (NM_001038619, intron 14 of 20)	-24598	NR_002870	474332	Mm.479755	NR_002870	ENSMUSG00000078190	Dnm3os	6030416H16Rik|Hag2|Npn1|P/L01	dynamin 3, opposite strand	ncRNA	7.063	0.964	0.510	4.151	4.250	3.144	5.044	4.954	nan	5.176	3.018	2.312	7.454	5.783	5.216	nan	7.125	6.577	nan	1.155	0.937	2.543	nan	1.344	5.489
1205	chr10	30521638	30523707	+	0	NA	Intergenic	MTE2b|LTR|ERVL-MaLR	78077	NM_028604	73681	Mm.294503	NM_028604	ENSMUSG00000019792	Trmt11	2410075D05Rik|3110045I18Rik|AW213713	tRNA methyltransferase 11	protein-coding	9.551	12.997	5.462	9.528	3.670	1.847	4.909	6.169	4.113	11.990	2.267	3.409	7.104	8.050	8.531	10.592	7.436	7.797	8.928	4.297	3.907	8.799	6.085	7.199	14.861
8814	chr2	152531705	152534378	+	0	NA	Intergenic	ORR1D1-int|LTR|ERVL-MaLR	7000	NM_001001444	75400	Mm.45560	NM_001001444	ENSMUSG00000044249	Defb29	0610030I09Rik|BD-29|mBD-29	defensin beta 29	protein-coding	3.280	1.640	0.447	9.036	1.745	0.784	4.378	6.570	3.529	6.229	3.848	2.093	6.660	6.794	6.640	9.786	3.319	5.833	2.525	1.066	1.100	4.703	1.511	1.102	5.458
3674	chr12	103859925	103865426	+	0	NA	intron (NM_001252569, intron 1 of 5)	intron (NM_001252569, intron 1 of 5)	944	NM_001252569	20700	Mm.439692	NM_009243	ENSMUSG00000066366	Serpina1a	Aat-2|Aat2|Dom1|PI1|Spi1-1|Spi1-3	serine (or cysteine) peptidase inhibitor, clade A, member 1A	protein-coding	2.972	3.506	0.626	4.523	1.704	1.355	2.781	3.249	nan	3.163	1.841	2.029	4.787	3.723	3.883	7.127	3.991	5.792	4.520	2.419	1.476	5.542	3.753	3.068	9.288
8047	chr2	27055593	27056906	+	0	NA	Intergenic	Intergenic	11619	NM_001159602	66139	Mm.330087	NM_025376	ENSMUSG00000009214	Tmem8c	1110002H13Rik|AI131587	transmembrane protein 8C	protein-coding	2.448	1.228	0.725	1.564	1.494	1.029	3.686	3.996	nan	1.701	0.582	0.307	3.709	4.074	3.509	5.093	4.487	3.308	0.848	0.396	0.384	0.650	0.579	0.795	5.316
14232	chr8	49017327	49019646	+	0	NA	Intergenic	Intergenic	-343796	NM_011857	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding	4.331	1.190	0.645	3.647	2.544	1.664	3.938	4.102	3.896	3.741	2.510	1.457	6.324	5.018	4.165	5.462	4.762	5.762	0.411	1.099	0.785	0.717	0.477	0.513	5.932
6982	chr18	4335530	4337795	+	0	NA	intron (NM_007746, intron 5 of 7)	intron (NM_007746, intron 5 of 7)	16291	NM_007746	26410	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	8.903	4.491	2.125	5.915	6.343	4.315	3.462	3.922	3.299	4.364	3.108	1.772	2.460	3.351	2.490	2.731	2.755	4.309	1.934	2.486	2.222	1.267	2.482	2.032	3.230
3625	chr12	99972433	99977168	+	0	NA	intron (NM_146037, intron 2 of 2)	L1M4|LINE|L1	10301	NM_001164427	217826	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	9.060	2.094	0.669	7.121	4.396	2.497	6.092	3.054	6.442	9.327	5.435	2.264	10.402	9.999	8.773	10.265	8.420	9.590	2.997	1.480	1.037	3.009	2.105	1.944	13.729
9360	chr3	65331531	65335104	+	0	NA	intron (NR_040390, intron 2 of 3)	intron (NR_040390, intron 2 of 3)	16112	NR_040390	319798	Mm.445698	NR_040390		A730090N16Rik	-	RIKEN cDNA A730090N16 gene	ncRNA	8.343	10.488	3.690	10.137	5.971	3.634	7.429	7.975	4.432	13.643	5.362	2.920	6.801	9.743	6.475	7.602	5.736	7.923	4.386	1.804	2.886	4.798	3.290	3.964	12.100
10164	chr4	62664443	62670711	+	0	NA	intron (NM_134257, intron 10 of 15)	intron (NM_134257, intron 10 of 15)	-6397	NM_001310706	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.903	nan	0.598	0.357	0.568	0.223	2.877	3.332	0.608	0.546	0.362	0.470	2.105	1.537	1.699	1.649	1.552	1.203	7.554	2.412	1.556	5.604	8.656	6.112	1.291
4728	chr14	60244212	60245443	+	0	NA	intron (NM_170591, intron 2 of 14)	intron (NM_170591, intron 2 of 14)	6551	NM_170591	71844	Mm.258051	NM_170591	ENSMUSG00000063895	Nupl1	1700017F11Rik|Nup58|mKIAA0410	nucleoporin like 1	protein-coding	0.844	nan	0.290	0.988	0.078	0.200	2.121	3.034	0.752	1.157	0.409	0.084	0.772	2.591	3.641	1.495	1.292	1.207	5.142	0.868	1.240	2.886	2.057	3.517	1.811
2091	chr11	40215367	40217059	+	0	NA	Intergenic	ORR1D2-int|LTR|ERVL-MaLR	476469	NM_134017	108645	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	5.171	1.141	0.762	1.998	1.996	0.483	3.413	3.943	3.272	2.811	2.288	4.497	2.430	3.741	4.507	4.295	4.045	3.350	0.630	0.430	0.072	0.516	0.361	0.176	2.021
3329	chr12	55287973	55294926	+	0	NA	intron (NM_021529, intron 7 of 13)	B4A|SINE|B4	-11188	NM_025373	66132	Mm.383213	NM_025373	ENSMUSG00000021023	1110008L16Rik	Kiaa0391|Mrpp3|mKIAA0391	RIKEN cDNA 1110008L16 gene	protein-coding	8.273	nan	0.600	1.260	2.320	1.179	6.315	8.276	1.709	2.158	5.528	5.727	5.508	4.760	6.473	nan	5.359	4.665	4.207	1.623	1.096	3.284	1.580	1.136	9.079
4161	chr13	55106077	55107611	+	0	NA	intron (NM_012017, intron 1 of 6)	intron (NM_012017, intron 1 of 6)	1535	NM_012017	26919	Mm.22795	NM_012017	ENSMUSG00000021481	Zfp346	Jaz|Znf346	zinc finger protein 346	protein-coding	2.750	0.742	0.086	1.226	0.424	0.242	2.817	6.359	1.913	3.262	0.576	0.858	3.902	4.582	2.124	3.891	1.485	2.473	2.147	0.640	1.215	2.800	0.996	0.859	5.615
1971	chr11	8883864	8888655	+	0	NA	Intergenic	Intergenic	124932	NM_001303610	15574	Mm.42201	NM_008316	ENSMUSG00000020413	Hus1	-	HUS1 checkpoint clamp component	protein-coding	nan	0.686	0.425	0.865	0.565	0.103	0.709	0.880	0.964	0.813	0.789	0.768	0.360	0.512	0.988	0.957	0.829	1.159	5.409	nan	1.363	4.817	5.275	3.612	1.182
6103	chr16	45926813	45931128	+	0	NA	Intergenic	Intergenic	81443	NM_001134480	433022	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	5.150	0.624	0.271	3.375	2.280	1.195	4.953	3.553	3.337	2.890	1.006	0.794	5.100	4.246	4.481	5.545	3.121	6.224	0.825	0.935	0.369	0.786	0.655	0.454	5.544
5939	chr16	24574784	24576228	+	0	NA	intron (NM_001145952, intron 3 of 11)	intron (NM_001145952, intron 3 of 11)	46192	NR_038091	624582	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	3.330	1.336	0.617	1.848	1.355	0.853	1.643	3.432	2.264	2.240	1.283	1.385	2.022	3.351	2.309	3.002	1.701	3.789	1.445	0.770	0.216	1.140	nan	0.130	2.116
9626	chr3	103189372	103191401	+	0	NA	Intergenic	Intergenic	18675	NM_026602	68183	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	2.562	3.364	1.109	1.623	1.099	0.588	4.623	3.254	1.979	2.269	1.068	0.489	2.684	4.463	nan	3.142	2.015	4.000	0.510	0.678	0.674	0.490	0.276	0.095	3.268
1226	chr10	40090198	40093746	+	0	NA	intron (NM_001114332, intron 1 of 5)	intron (NM_001114332, intron 1 of 5)	50282	NM_028247	72472	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	3.919	2.018	1.195	2.162	2.190	1.578	1.992	3.323	3.716	1.959	6.283	5.037	2.850	3.436	2.489	2.386	2.355	3.203	1.294	1.265	1.223	1.013	0.693	0.752	1.870
1949	chr11	6373380	6376701	+	0	NA	Intergenic	B3A|SINE|B2	-20085	NM_001005867	52915	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	8.419	14.927	5.325	10.652	5.976	5.345	8.237	9.051	6.213	15.831	7.205	4.309	7.941	9.402	9.070	10.690	6.352	9.594	6.738	2.168	4.360	6.043	3.910	7.654	12.785
1256	chr10	42549459	42555981	+	0	NA	Intergenic	ID_B1|SINE|B4	30868	NM_152229	21907	Mm.287100	NM_152229	ENSMUSG00000019803	Nr2e1	Mtl1|Mtll|TLL|Tlx|XTLL|fierce|frc|tailless	nuclear receptor subfamily 2, group E, member 1	protein-coding	5.575	1.351	0.614	2.880	2.573	1.482	3.975	3.827	4.774	5.091	1.073	0.798	5.349	6.135	5.946	7.413	5.654	6.333	1.377	1.058	0.647	1.340	0.851	0.563	7.412
8203	chr2	36125780	36128295	+	0	NA	intron (NM_001159635, intron 3 of 5)	intron (NM_001159635, intron 3 of 5)	-9361	NM_026422	67871	Mm.378232	NM_026422	ENSMUSG00000026887	Mrrf	2400002D02Rik|MRFF|MTRRF|RRF	mitochondrial ribosome recycling factor	protein-coding	4.725	0.529	0.413	2.752	1.423	0.473	2.019	3.008	2.066	3.488	1.105	0.437	4.523	4.758	3.225	4.175	3.458	3.000	0.571	0.344	0.320	0.641	0.278	0.303	5.234
5927	chr16	24199115	24210586	+	0	NA	Intergenic	Intergenic	-188500	NM_178665	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	3.376	10.649	4.792	2.300	1.697	0.909	1.645	4.990	2.842	2.524	2.869	1.858	nan	3.631	2.895	nan	1.681	3.592	0.825	0.580	0.423	1.198	nan	0.283	3.155
9616	chr3	101726554	101728888	+	0	NA	Intergenic	Intergenic	108502	NM_172295	242125	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	6.151	12.383	4.332	9.621	3.910	3.052	5.767	7.706	5.799	11.555	8.240	4.047	8.133	7.866	8.352	8.405	5.039	9.503	7.121	2.319	3.453	10.338	3.442	5.272	13.004
1853	chr10	127329220	127339273	+	0	NA	exon (NM_010296, exon 10 of 13)	exon (NM_010296, exon 10 of 13)	7333	NM_010296	14632	Mm.391450	NM_010296	ENSMUSG00000025407	Gli1	AV235269|Zfp-5|Zfp5	GLI-Kruppel family member GLI1	protein-coding	5.465	nan	0.324	1.451	0.792	0.451	4.266	6.023	2.572	2.005	2.552	1.922	5.346	4.264	5.460	5.420	4.632	4.158	0.978	0.777	0.388	1.172	nan	0.893	4.897
12221	chr6	50209678	50213697	+	0	NA	intron (NM_018769, intron 9 of 9)	intron (NM_018769, intron 9 of 9)	50082	NM_018769	54722	Mm.248361	NM_018769	ENSMUSG00000029821	Dfna5	2310037D07Rik|4932441K13Rik|Dfna5h|EG14210|Fin15	deafness, autosomal dominant 5 (human)	protein-coding	2.828	1.532	0.486	1.717	1.326	0.566	5.152	6.033	1.733	1.901	1.689	1.415	4.526	4.412	5.269	5.416	3.281	3.670	nan	1.807	1.431	4.967	2.812	1.973	4.450
9270	chr3	50916592	50918655	+	0	NA	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	-306824	NM_009834	12457	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	3.164	0.500	0.666	0.992	1.106	0.663	3.692	2.262	1.481	2.102	0.849	0.492	3.541	5.501	3.526	4.384	5.701	2.534	0.944	0.968	0.600	0.623	1.367	0.582	3.562
2300	chr11	61742753	61745119	+	0	NA	intron (NM_001164242, intron 6 of 10)	MTEb|LTR|ERVL-MaLR	18152	NM_144806	212627	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	8.108	12.655	3.758	9.336	3.377	1.618	4.813	6.683	5.566	9.041	4.393	2.709	5.944	8.078	9.100	8.614	5.636	8.462	nan	1.913	2.082	5.995	2.325	2.355	9.673
2480	chr11	76187625	76189978	+	0	NA	Intergenic	Intergenic	-9171	NM_026664	68299	Mm.46397	NM_026664	ENSMUSG00000017288	Vps53	2010002A08Rik|2310040I21Rik|3100002B05Rik|Hccs1	VPS53 GARP complex subunit	protein-coding	1.817	0.899	0.575	3.385	0.958	0.804	nan	0.752	1.424	1.432	6.960	3.581	0.545	nan	nan	1.325	1.182	nan	0.794	0.813	nan	0.856	0.522	0.860	2.126
799	chr1	162963687	162967171	+	0	NA	intron (NM_008030, intron 5 of 8)	intron (NM_008030, intron 5 of 8)	19099	NM_008030	14262	Mm.2900	NM_008030	ENSMUSG00000026691	Fmo3	AW111792	flavin containing monooxygenase 3	protein-coding	10.827	11.308	3.869	8.049	5.334	2.650	9.149	7.339	nan	8.456	7.762	4.168	8.324	8.999	9.786	15.123	9.482	8.132	5.007	4.004	2.632	6.476	nan	3.418	12.208
11635	chr5	118594269	118595266	+	0	NA	intron (NM_001347445, intron 2 of 30)	intron (NM_001347445, intron 2 of 30)	34048	NM_172424	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	3.052	1.201	0.132	2.982	1.294	0.814	2.257	2.077	2.938	3.507	1.960	0.746	2.111	3.313	2.084	3.626	1.638	3.731	nan	nan		0.626	nan	0.094	2.190
925	chr1	180264341	180268937	+	0	NA	Intergenic	Intergenic	-10339	NM_001128605	19165	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	13.570	13.410	5.145	13.577	7.560	6.652	11.360	9.691	8.235	15.450	9.115	6.892	11.746	nan	11.044	15.604	11.304	12.383	8.275	3.789	6.168	7.873	5.496	8.797	13.884
5657	chr15	99869102	99873788	+	0	NA	intron (NM_001113545, intron 1 of 10)	RLTR17B_Mm|LTR|ERVK	4011	NM_001113545	65970	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	7.348	6.223	2.012	7.452	3.106	1.797	4.497	8.577	4.250	6.866	6.815	4.293	6.176	5.178	7.163	6.893	5.843	7.834	4.517	2.014	1.821	5.992	3.783	3.266	9.260
11873	chr5	139687739	139689027	+	0	NA	Intergenic	Intergenic	47950	NM_174850	231830	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	2.412	1.040	0.599	3.085	5.156	5.406	5.165	3.916	4.861	3.464	3.382	3.531	3.127	5.627	3.266	3.557	2.055	3.908	5.121	3.401	1.980	4.285	7.864	6.213	2.371
7834	chr19	46673622	46676344	+	0	NA	Intergenic	Intergenic	-1983	NM_007809	13074	Mm.1262	NM_007809	ENSMUSG00000003555	Cyp17a1	Cyp17|p450c17	cytochrome P450, family 17, subfamily a, polypeptide 1	protein-coding	8.928	5.151	2.552	5.792	7.122	3.741	12.085	13.680	3.447	5.830	8.160	4.084	4.258	8.828	6.068	6.276	7.365	4.956	1.412	2.646	1.603	2.226	2.416	1.448	9.355
8155	chr2	33207665	33213224	+	0	NA	intron (NM_001290572, intron 8 of 17)	RMER1A|Other|Other	-5517	NM_011923	26360	Mm.208919	NM_011923	ENSMUSG00000004105	Angptl2	AI593246|AW260363|Arp2	angiopoietin-like 2	protein-coding	1.445	0.983	0.794	1.347	1.891	1.380	0.829	nan	1.056	nan	1.494	0.821	0.568	1.150	0.758	1.397	1.086	1.243	2.551	2.486	1.941	3.674	2.871	2.696	1.286
14307	chr8	73153894	73160558	+	0	NA	intron (NM_001317391, intron 3 of 15)	L1Md_T|LINE|L1	140714	NR_039551	100628574		NR_039551	ENSMUSG00000093140	Mir28b	mmu-mir-28b	microRNA 28b	ncRNA	5.416	nan	2.957	4.415	2.179	1.319	nan	10.845	nan	2.741	2.855	1.199	6.889	5.259	5.891	nan	3.807	4.361	1.163	1.012	1.006	nan	0.768	0.558	nan
2368	chr11	69242573	69243800	+	0	NA	Intergenic	Intergenic	-6164	NM_008192	14919	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	4.633	1.408	1.040	2.424	1.765	1.588	2.420	5.229	2.389	2.398	1.313	1.746	2.131	3.551	3.669	2.999	3.531	2.379	1.037	1.157	0.576	0.511	nan	0.651	nan
3357	chr12	57609072	57643001	+	0	NA	intron (NM_001312644, intron 5 of 31)	MIR|SINE|MIR	-7434	NR_131110	78758	Mm.160125	NR_131110	ENSMUSG00000085851	4921518K17Rik	-	RIKEN cDNA 4921518K17 gene	ncRNA	13.481	nan	0.415	7.434	8.376	4.668	12.735	8.058	9.398	13.410	9.378	1.597	13.009	13.871	nan	nan	11.761	nan	9.415	4.986	3.568	6.905	7.411	6.116	17.974
15511	chr9	108940314	108944425	+	0	NA	intron (NM_025407, intron 3 of 12)	MTE2a|LTR|ERVL-MaLR	5721	NM_025407	22273	Mm.335460	NM_025407	ENSMUSG00000025651	Uqcrc1	1110032G10Rik	ubiquinol-cytochrome c reductase core protein 1	protein-coding	8.766	4.189	1.226	10.378	4.140	2.660	7.750	9.014	5.442	7.983	5.245	3.089	8.195	9.736	9.576	10.896	4.348	9.002	2.799	1.425	1.829	2.757	2.190	1.798	15.572
1955	chr11	6503430	6505623	+	0	NA	Intergenic	PB1D11|SINE|Alu	16432	NM_178440	246177	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	2.026	1.718	0.835	3.375	1.307	0.949	3.370	1.831	1.813	3.597	1.425	0.420	1.145	4.529	4.805	4.532	1.730	2.626	5.450	nan	2.960	5.642	2.727	2.380	3.942
9977	chr4	35074113	35075537	+	0	NA	intron (NM_178061, intron 2 of 3)	MERVL-int|LTR|ERVL	-77230	NM_199157	387510	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	3.437	0.998	0.973	3.133	2.627	0.953	3.837	1.633	2.365	3.331	0.695	1.126	3.585	4.300	3.804	3.848	2.294	3.743	0.779	0.483	0.840	0.775	0.801	0.430	3.789
8985	chr2	165676582	165687087	+	0	NA	intron (NM_001271962, intron 2 of 15)	intron (NM_001271962, intron 2 of 15)	26536	NM_010165	14049	Mm.282719	NM_010165	ENSMUSG00000017897	Eya2	Eab1	EYA transcriptional coactivator and phosphatase 2	protein-coding	9.231	3.862	1.990	7.611	4.255	2.793	5.625	9.214	4.606	5.619	7.920	3.278	5.775	7.587	6.748	8.083	5.610	nan	5.060	3.739	3.149	5.533	4.670	3.509	nan
6633	chr17	43808589	43810056	+	0	NA	intron (NM_001286653, intron 1 of 4)	intron (NM_001286653, intron 1 of 4)	5319	NM_001286653	53901	Mm.251242	NM_030598	ENSMUSG00000039601	Rcan2	Csp2|Dscr1l1|MCIP2|ZAKI-4	regulator of calcineurin 2	protein-coding	2.761	0.937	0.522	3.082	2.556	2.008	2.356	5.182	2.298	1.886	1.093	1.085	1.790	3.865	1.750	3.603	2.510	3.380	1.085	1.367	0.905	1.105	3.535	2.571	1.434
11544	chr5	108889696	108892294	+	0	NA	Intergenic	Intergenic	-38485	NM_001104621	435864	Mm.387745	NM_001104621	ENSMUSG00000091624	Vmn2r9	EG435864	vomeronasal 2, receptor 9	protein-coding	7.037	7.772	1.800	9.190	2.739	2.111	5.435	5.659	4.606	8.277	5.450	2.708	4.962	7.026	7.989	8.389	3.561	8.089	nan	1.500	1.931	4.914	2.083	2.762	12.559
5866	chr16	19976791	19978740	+	0	NA	intron (NM_183390, intron 1 of 6)	Lx8|LINE|L1	5284	NM_183390	239743	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	1.855	6.459	6.036	1.147	0.985	0.756	0.722	0.841	1.496	nan	1.803	1.369	0.907	1.212	1.086	1.489	1.336	1.881	0.722	0.922	0.440	0.389	0.442	0.449	1.245
8448	chr2	91843802	91845442	+	0	NA	intron (NM_172669, intron 11 of 17)	B4A|SINE|B4	-77567	NM_007699	12672	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	3.427	0.648	0.228	1.575	1.654	0.427	4.503	7.347	2.603	2.660	0.610	1.782	4.272	4.438	3.643	5.186	5.178	3.851	1.307	0.349	0.669	0.638	0.885	1.010	3.494
7871	chr19	53513304	53522464	+	0	NA	Intergenic	Intergenic	-11434	NM_001085390	240672	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0.849	13.334	5.125	1.118	0.382	0.301	0.766	nan	0.596	0.674	0.765	0.631	0.323	0.564	nan	0.941	0.720	0.971	0.421	0.556	0.438	0.507	0.465	0.255	nan
15363	chr9	86452922	86455321	+	0	NA	intron (NM_027394, intron 1 of 9)	intron (NM_027394, intron 1 of 9)	10795	NM_027394	70348	Mm.53469	NM_027394	ENSMUSG00000032415	Ube2cbp	2610018I03Rik|Ube3d	ubiquitin-conjugating enzyme E2C binding protein	protein-coding	3.796	0.761	0.594	2.233	0.864	0.893	2.986	1.009	1.740	2.220	1.245	0.493	7.013	5.481	1.769	2.655	2.577	2.578	0.676	0.808	1.058	0.776	0.486	0.452	5.297
2784	chr11	100581090	100584479	+	0	NA	TTS (NM_019795)	TTS (NM_019795)	6893	NM_001146318	12799	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	6.279	2.842	1.269	7.160	3.021	1.111	2.369	2.501	3.828	4.365	5.008	2.361	2.130	4.699	3.709	5.183	2.338	6.089	1.207	nan	1.346	1.395	nan	nan	5.258
15144	chr9	59597835	59600303	+	0	NA	intron (NM_001311092, intron 2 of 10)	intron (NM_001311092, intron 2 of 10)	9755	NM_001311092	76183	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	9.438	5.872	3.159	6.088	3.041	2.309	6.397	6.735	3.458	7.528	4.323	2.047	5.774	8.413	5.351	7.575	6.516	5.510	4.215	3.670	3.874	4.437	5.552	4.319	13.236
206	chr1	58466295	58467579	+	0	NA	intron (NM_001025378, intron 13 of 14)	Lx4A|LINE|L1	-21451	NM_001285827	70225	Mm.340195	NM_027351	ENSMUSG00000026035	Ppil3	2310076N22Rik|2510026K04Rik|Cyp10l	peptidylprolyl isomerase (cyclophilin)-like 3	protein-coding	4.946	0.977	1.120	1.729	3.333	3.427	4.492	2.213	1.784	1.335	1.225	0.964	4.714	5.493	2.936	3.808	3.260	2.535	0.894	0.803	1.409	0.419	0.488	0.788	2.319
14285	chr8	72458685	72464798	+	0	NA	intron (NM_138585, intron 16 of 17)	intron (NM_138585, intron 16 of 17)	8348	NR_106036	102465647		NR_106036	ENSMUSG00000099079	Mir7068	Gm27570|mmu-mir-7068	microRNA 7068	ncRNA	7.353	4.074	1.500	5.193	3.602	2.135	2.238	5.684	3.382	3.637	3.021	1.435	2.419	3.795	3.932	6.118	3.030	6.387	nan	1.172	1.311	1.750	0.927	0.797	7.814
3791	chr12	118007828	118018924	+	0	NA	intron (NM_010060, intron 49 of 81)	B3|SINE|B2	169515	NM_146040	217946	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	nan	0.561	0.276	7.294	7.988	3.296	5.156	7.412	7.885	10.834	2.063	1.273	7.434	10.357	8.465	nan	6.214	10.127	2.087	0.725	0.487	2.171	0.947	0.490	11.317
15000	chr9	43591314	43593746	+	0	NA	Intergenic	Intergenic	-152046	NM_021424	58235	Mm.335096	NM_021424	ENSMUSG00000032012	Nectin1	AI835281|AW549174|Cd111|HIgR|HveC|PRR|PRR1|Pvrl1|nectin-1	nectin cell adhesion molecule 1	protein-coding	2.035	1.750	0.633	1.085	0.519	0.252	1.560	2.841	0.579	0.914	7.411	1.972	1.429	1.029	nan	nan	0.971	1.946	1.086	0.662	0.704	nan	0.323	0.274	4.316
14691	chr8	122919026	122921851	+	0	NA	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	72064	NM_007662	12555	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	1.350	1.048	0.707	2.009	1.779	1.263	2.493	4.177	2.035	2.924	1.439	1.524	2.809	3.407	2.454	nan	2.214	2.173	4.671	4.281	6.026	8.487	3.456	4.190	2.323
12556	chr6	108196627	108197670	+	0	NA	Intergenic	Intergenic	-11565	NM_145937	58911	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	3.698	1.498	0.480	1.723	1.582	1.300	3.410	4.660	1.662	1.888	2.150	1.514	2.281	4.155	3.004	4.996	5.186	3.160	nan	1.179	1.552	0.952	1.119	0.947	2.165
5516	chr15	84553100	84556298	+	0	NA	3' UTR (NM_177630, exon 1 of 1)	3' UTR (NM_177630, exon 1 of 1)	3124	NM_177630	223732	Mm.6471	NM_177630	ENSMUSG00000055745	Ldoc1l	BC058638|Mar6|Mart6	leucine zipper, down-regulated in cancer 1-like	protein-coding	5.467	2.763	1.829	2.719	3.143	1.819	10.713	8.871	nan	3.761	2.099	2.001	7.230	6.175	nan	5.197	8.248	4.740	nan	1.478	1.218	nan	1.521	1.002	4.466
331	chr1	77208716	77212174	+	0	NA	Intergenic	LTR33A|LTR|ERVL	286323	NR_105770	102465180		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	2.087	0.329	0.149	1.020	0.414	0.176	0.994	1.071	1.041	1.306	1.019	0.576	1.072	1.146	1.051	nan	1.527	2.215	4.412	nan	0.487	5.222	nan	0.885	nan
358	chr1	82605006	82606137	+	0	NA	intron (NM_007734, intron 1 of 51)	RLTR51B_Mm|LTR|ERVK?	18650	NM_007734	12828	Mm.389135	NM_007734	ENSMUSG00000079465	Col4a3	[a]3(IV)|alpha3(IV)	collagen, type IV, alpha 3	protein-coding	2.373	1.755	0.804	2.717	1.851	1.055	2.272	1.418	1.491	2.755	0.601	0.867	4.237	3.574	1.864	4.080	2.104	3.682	nan	nan	0.325	1.489	nan	0.385	2.981
12202	chr6	47758983	47764320	+	0	NA	Intergenic	RMER12B|LTR|ERVK	-8726	NR_002841	19799		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	6.862	5.853	2.510	4.202	3.447	2.431	8.477	8.278	4.860	5.030	3.565	2.665	7.488	9.603	8.254	10.930	8.780	5.298	nan	3.036	2.476	3.456	2.819	2.006	6.457
2746	chr11	98440196	98450685	+	0	NA	Intergenic	Intergenic	-1394	NM_010346	14786	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	3.284	nan	0.823	2.104	1.375	0.837	3.395	6.928	1.479	1.897	1.419	0.687	2.909	3.247	3.421	3.204	nan	3.012	0.867	nan	0.659	0.988	nan	nan	2.455
3606	chr12	88281550	88292209	+	0	NA	non-coding (NR_033570, exon 1 of 1)	non-coding (NR_033570, exon 1 of 1)	191	NR_033570	633093	Mm.482503	NR_033570		Gm7104	-	REX1, RNA exonuclease 1 homolog pseudogene	pseudo	8.714	5.679	2.432	8.471	5.361	3.113	5.779	4.965	5.589	6.946	3.416	2.009	7.498	10.578	7.209	8.325	6.799	7.627	4.674	2.239	1.768	4.589	2.441	2.067	10.584
6984	chr18	4513513	4516089	+	0	NA	Intergenic	Intergenic	-120128	NM_001081963	240185	Mm.33179	NM_001081963	ENSMUSG00000033960	9430020K01Rik	1110056P05Rik|Gm328|Jcad|mKIAA1462	RIKEN cDNA 9430020K01 gene	protein-coding	4.050	1.156	0.205	5.401	1.110	0.551	1.570	1.148	2.341	2.324	1.369	0.585	nan	1.962	1.710	2.591	1.104	4.662	2.452	1.421	0.827	2.038	2.032	1.186	2.610
6596	chr17	35762470	35766478	+	0	NA	Intergenic	PB1D10|SINE|Alu	-7976	NR_045459	74601	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	nan	0.734	0.331	0.389	1.152	0.769	1.738	2.465	1.300	0.820	5.452	2.133	0.808	1.201	1.212	0.955	0.589	1.035	0.696	0.301	0.152	0.328	0.387	0.156	0.914
6965	chr17	89024885	89032760	+	0	NA	intron (NM_013523, intron 4 of 9)	L1Md_F2|LINE|L1	171853	NM_013523	14309	Mm.57155	NM_013523	ENSMUSG00000032937	Fshr	-	follicle stimulating hormone receptor	protein-coding	9.215	1.704	0.951	6.458	4.908	3.207	10.688	8.852	nan	4.979	2.643	1.768	5.660	10.231	7.164	8.545	6.560	6.931	0.832	1.656	1.140	0.925	1.083	0.844	9.266
12095	chr6	28681956	28688298	+	0	NA	intron (NM_019776, intron 12 of 23)	(GA)n|Simple_repeat|Simple_repeat	146620	NM_138682	192198	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	2.833	0.722	0.375	1.668	1.362	0.862	5.234	5.605	2.360	2.366	0.781	1.185	5.129	4.439	4.556	5.890	7.288	3.521	nan	0.703	0.446	0.604	0.551	0.301	2.233
5645	chr15	99471448	99483251	+	0	NA	Intergenic	Arthur1|DNA|hAT-Tip100	-2619	NM_029236	75284	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	1.682	5.252	1.958	1.344	1.100	0.614	1.218	1.536	1.516	1.350	1.024	0.903	1.680	1.332	1.557	nan	1.986	1.779	6.721	4.030	3.254	5.697	6.208	5.982	1.788
2228	chr11	55142149	55143886	+	0	NA	intron (NM_172258, intron 4 of 10)	intron (NM_172258, intron 4 of 10)	8689	NM_172258	215332	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	1.292	0.562	0.429	0.510	0.397	0.142	0.761	1.242	0.666	0.744	5.944	3.091	1.014	nan	1.624	1.534	1.045	0.939	nan	0.700	0.353	1.329	0.261	0.645	nan
15424	chr9	100470014	100471846	+	0	NA	intron (NM_001033543, intron 3 of 6)	intron (NM_001033543, intron 3 of 6)	15543	NM_001033543	213208	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	4.121	0.795	0.188	8.307	1.935	0.565	3.895	7.214	3.532	6.066	1.315	1.677	4.533	4.834	8.485	7.784	2.494	7.127	7.309	2.352	2.517	9.624	4.823	4.439	11.548
13743	chr7	133725596	133731937	+	0	NA	intron (NM_133941, intron 7 of 11)	intron (NM_133941, intron 7 of 11)	19433	NM_025392	66165	Mm.389983	NM_025392	ENSMUSG00000030983	Bccip	1110013J05Rik|TOK-1	BRCA2 and CDKN1A interacting protein	protein-coding	6.938	4.329	1.898	5.341	3.863	1.860	4.363	7.973	nan	4.263	3.282	1.905	4.339	5.984	5.032	4.756	4.416	4.742	2.568	3.088	2.240	2.612	2.913	1.961	7.007
2070	chr11	32451614	32454659	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	-2236	NM_173784	327900	Mm.260956	NM_173784	ENSMUSG00000044949	Ubtd2	4930571L24|9630054F20Rik|AI645720	ubiquitin domain containing 2	protein-coding	4.267	8.045	1.938	6.105	5.101	2.782	5.529	5.013	2.983	4.047	3.399	1.393	4.364	6.309	3.818	5.669	2.156	2.911	0.685	0.766	0.875	1.156	0.603	0.378	5.277
11515	chr5	104537328	104544769	+	0	NA	intron (NR_030673, intron 2 of 3)	intron (NR_030673, intron 2 of 3)	15313	NR_030673	100662	Mm.319836	NR_030673	ENSMUSG00000097392	D930016D06Rik	100041172|1110004B06Rik|AI451450|Gm3179	RIKEN cDNA D930016D06 gene	ncRNA	4.890	1.264	0.508	5.015	1.918	0.930	1.916	1.649	3.043	3.904	1.418	1.131	1.589	3.031	2.415	3.386	1.884	4.618	nan	1.009	0.500	1.659	0.573	0.363	3.041
13749	chr7	133837900	133840025	+	0	NA	intron (NM_025850, intron 1 of 10)	MLTR11A|LTR|ERVK	-56177	NM_001286031	101437	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	7.422	10.316	3.897	7.681	2.740	3.364	5.559	6.892	5.134	6.684	5.620	3.241	5.860	8.332	7.996	7.881	6.169	6.788	3.313	2.294	2.703	4.513	2.957	3.453	10.460
10841	chr4	141752239	141753772	+	0	NA	intron (NM_001081408, intron 2 of 6)	(TC)n|Simple_repeat|Simple_repeat	6330	NM_001081408	75986	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	3.193	0.918	0.478	3.079	1.154	0.922	3.070	5.065	3.043	1.726	0.875	2.249	4.021	3.554	4.457	4.506	1.738	4.616	0.971	0.428	0.364	1.653	nan	0.513	4.811
7413	chr18	79230083	79232919	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-122110	NM_053099	240427	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	4.965	4.230	1.848	3.200	3.902	1.451	2.695	7.510	3.351	3.880	3.466	3.117	4.305	5.129	4.250	5.335	4.602	5.615	3.243	nan	0.755	2.366	1.757	1.048	4.421
6843	chr17	72184324	72188133	+	0	NA	intron (NM_007439, intron 4 of 28)	Lx2|LINE|L1	404281	NM_030179	78785	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	1.816	0.789	0.352	1.125	0.808	0.390	0.526	0.394	nan	0.980	0.521	0.519	0.857	nan	0.980	1.305	0.684	1.097	5.905	3.278	1.535	3.421	4.117	2.500	0.864
14693	chr8	122956037	122976576	+	0	NA	intron (NM_001081379, intron 2 of 12)	ERVL-B4-int|LTR|ERVL	75978	NR_037865	77087	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	1.278	1.280	0.559	1.538	0.730	0.419	0.892	2.165	1.190	1.232	0.469	0.571	1.556	1.471	1.938	nan	1.374	1.956	4.244	3.742	3.500	10.890	2.985	2.576	2.212
4112	chr13	49434022	49438725	+	0	NA	intron (NR_075085, intron 6 of 13)	intron (NR_075085, intron 6 of 13)	14759	NM_001276399	75678	Mm.390586	NM_199056	ENSMUSG00000021385	Ippk	1810043M15Rik|InsP6	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	protein-coding	4.357	4.589	1.744	5.172	1.818	1.225	2.100	2.901	2.592	4.827	3.742	1.223	2.557	4.635	4.367	5.212	2.210	nan	3.173	nan	1.343	3.550	2.135	1.968	7.565
9910	chr4	8163995	8167444	+	0	NA	intron (NM_007592, intron 8 of 8)	L1M5|LINE|L1	73322	NM_007592	12319	Mm.119320	NM_007592	ENSMUSG00000041261	Car8	AW546993|Ca8|Cals|Cals1|Carp|wdl	carbonic anhydrase 8	protein-coding	4.234	0.475	0.490	3.987	2.356	1.176	4.817	5.721	3.415	4.660	0.470	0.685	6.321	4.498	6.349	7.002	4.045	6.453	7.596	nan	1.047	2.212	4.636	3.602	7.880
4336	chr13	101312074	101318743	+	0	NA	Intergenic	Intergenic	61089	NR_045846	71174	Mm.399537	NR_045846	ENSMUSG00000100733	4933416M06Rik	-	RIKEN cDNA 4933416M06 gene	ncRNA	4.289	0.507	0.461	2.029	2.774	2.268	3.652	5.158	2.409	2.015	1.826	2.532	3.589	2.811	3.412	3.040	nan	nan	3.498	3.036	3.548	3.757	5.718	6.197	3.925
8665	chr2	130584767	130587871	+	0	NA	Intergenic	Intergenic	-3731	NM_009732	11998	Mm.6190	NM_009732	ENSMUSG00000037727	Avp	Vp|Vsp	arginine vasopressin	protein-coding	3.007	0.612	0.727	0.662	0.809	0.787	4.700	4.258	1.981	1.632	0.643	1.681	3.401	3.060	1.908	5.095	3.669	2.682	nan	0.465	0.397	0.753	0.390	0.427	1.109
7707	chr19	32450176	32454431	+	0	NA	Intergenic	Intergenic	-33466	NM_010799	17330	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	nan	2.238	0.837	nan	0.665	0.375	0.482	1.219	0.981	0.875	nan	0.850	0.425	0.658	0.732	1.393	1.095	1.566	nan	1.286	0.576	4.470	nan	1.090	1.550
1312	chr10	58683309	58687595	+	0	NA	Intergenic	L2|LINE|L2	-9756	NM_010100	13608	Mm.174523	NM_010100	ENSMUSG00000003227	Edar	ED1R|ED3|ED5|EDA-A1R|EDA3|dl	ectodysplasin-A receptor	protein-coding	8.057	10.170	3.318	9.236	2.275	1.467	4.621	7.101	4.638	7.983	4.629	2.587	5.291	5.944	7.846	8.621	5.707	7.898	5.042	1.478	1.945	4.638	3.143	3.269	nan
14779	chr8	127314364	127320497	+	0	NA	intron (NM_001309391, intron 4 of 24)	intron (NM_001309391, intron 4 of 24)	17778	NM_001013580	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0.327	nan	0.210	nan	0.196	0.120	nan	nan	0.259	0.486	0.224	0.148	0.252	0.257	nan	0.703	0.336	nan	nan	2.342	3.096	8.894	3.210	nan	nan
7873	chr19	53534663	53536803	+	0	NA	intron (NM_001085390, intron 2 of 3)	intron (NM_001085390, intron 2 of 3)	6415	NM_001085390	240672	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	4.976	13.770	6.355	3.281	1.475	0.402	8.624	7.841	2.454	2.152	8.485	4.864	3.577	5.399	5.446	5.024	3.205	4.885	0.831	1.760	1.006	1.159	2.651	1.180	7.802
5293	chr15	73014069	73015729	+	0	NA	intron (NM_029640, intron 6 of 21)	intron (NM_029640, intron 6 of 21)	40913	NM_029640	76510	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	10.056	19.606	3.925	nan	5.103	4.688	nan	14.024	5.788	19.251	8.204	4.772	11.817	9.676	11.754	12.753	7.556	10.500	6.912	1.800	6.824	8.700	3.794	7.851	19.356
7253	chr18	55469086	55470155	+	0	NA	Intergenic	Intergenic	-479440	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	6.020	nan	0.941	1.911	2.994	0.987	5.031	1.824	4.371	5.613	2.180	0.783	6.082	3.792	2.904	4.930	5.125	5.791	nan	0.837	0.705	nan	1.012	0.899	4.534
4473	chr14	12638804	12645439	+	0	NA	intron (NM_012061, intron 3 of 28)	intron (NM_012061, intron 3 of 28)	180958	NM_001042617	27062	Mm.260881	NM_012061	ENSMUSG00000054423	Cadps	AU067781|CAPS|CAPS1|mKIAA1121	Ca2+-dependent secretion activator	protein-coding	3.349	0.636	0.226	2.185	1.398	0.759	4.791	2.489	3.599	3.499	2.250	1.791	5.826	6.595	5.015	4.341	2.216	4.176	0.732	0.588	0.274	0.621	0.398	0.296	3.317
13005	chr7	25756144	25757688	+	0	NA	3' UTR (NM_001190974, exon 19 of 19)	3' UTR (NM_001190974, exon 19 of 19)	-2196	NM_144922	232989	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	9.528	11.177	1.717	12.421	3.323	2.148	7.767	12.440	4.494	9.436	4.853	2.733	9.250	13.010	11.031	11.178	5.404	9.866	3.949	1.824	1.471	5.045	2.664	1.781	14.865
7100	chr18	32306481	32314034	+	0	NA	Intergenic	Intergenic	-66960	NM_001083334	30948	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	3.029	0.988	0.536	1.851	2.022	1.166	5.291	7.814	2.125	1.824	1.776	3.256	4.858	3.065	3.885	4.830	3.056	4.171	nan	0.614	0.635	nan	0.946	0.672	3.416
2365	chr11	69208062	69212173	+	0	NA	Intergenic	MYSERV16_I-int|LTR|ERVK	-12274	NM_009661	11688	Mm.289672	NM_009661	ENSMUSG00000020891	Alox8	15-LOX-2|15-LOX-B|8-LOX|8S-LOX|Alox15b	arachidonate 8-lipoxygenase	protein-coding	6.944	7.954	2.154	8.557	2.709	1.746	5.563	5.619	4.775	6.228	4.230	2.502	5.551	7.124	7.687	8.973	5.512	6.910	2.818	1.999	1.387	3.521	nan	1.450	9.027
1263	chr10	43408556	43414904	+	0	NA	intron (NM_027772, intron 6 of 7)	intron (NM_027772, intron 6 of 7)	-67410	NM_199028	331623	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	2.938	nan	0.677	1.503	1.018	0.601	3.215	5.159	1.930	1.556	2.719	2.745	2.336	2.327	3.360	2.962	1.932	2.405	nan	1.795	1.342	3.143	2.299	1.250	2.232
14603	chr8	113308686	113319334	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-203272	NR_110476	78048	Mm.252797	NR_110476		4930571O06Rik	-	RIKEN cDNA 4930571O06 gene	ncRNA	6.943	1.787	0.855	3.842	3.873	2.931	7.603	9.893	4.592	4.600	3.166	1.635	8.966	8.229	7.446	nan	7.190	5.428	1.165	0.926	1.188	1.785	1.028	1.069	8.199
10486	chr4	122745450	122754281	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	60606	NM_023865	77432	Mm.491436	NM_023865	ENSMUSG00000023263	9530002B09Rik	Aump|Vpp1|Vppl	RIKEN cDNA 9530002B09 gene	protein-coding	2.193	0.555	0.549	0.997	1.121	0.753	1.442	2.039	1.009	1.145	1.856	1.492	1.136	1.844	1.072	nan	1.837	1.102	3.160	17.316	15.405	4.863	4.142	3.534	1.747
14256	chr8	64035126	64039707	+	0	NA	intron (NM_009390, intron 18 of 20)	intron (NM_009390, intron 18 of 20)	-85246	NM_001195687	244495	Mm.485331	NM_001195687	ENSMUSG00000094443	Sgol2b	EG244495|Gm4975|Sgo2B	shugoshin like 2b (S. pombe)	protein-coding	1.714	1.573	1.148	2.000	1.092	0.365	0.714	1.257	1.167	0.837	1.518	1.083	0.532	1.086	0.955	1.092	0.716	1.499	nan	4.061	2.251	5.377	1.816	1.184	nan
9590	chr3	98977500	98981065	+	0	NA	Intergenic	Intergenic	-70540	NR_110516	102634753		NR_110516	ENSMUSG00000086833	Gm12440	OTTMUSG00000006864	predicted gene 12440	ncRNA	0.685	0.594	0.513	0.297	0.354	0.209	0.543	0.447	0.568	0.494	nan	0.522	0.415	0.265	0.460	nan	0.683	0.593	6.427	2.300	1.473	4.961	3.913	3.203	0.602
13631	chr7	119927365	119934527	+	0	NA	Intergenic	B4|SINE|B4	30835	NR_126475	73919	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	3.189	0.723	0.348	3.005	2.325	1.391	4.120	4.286	2.901	3.588	1.496	1.400	4.397	nan	4.735	4.812	3.897	4.464	4.558	2.386	1.717	5.224	3.413	2.484	4.462
10210	chr4	82035695	82039214	+	0	NA	Intergenic	Intergenic	-27926	NR_040659	545641	Mm.216028	NR_040659	ENSMUSG00000085022	Gm5860	EG545641	predicted gene 5860	ncRNA	3.804	0.939	0.426	3.567	2.062	0.975	2.912	4.681	4.216	3.370	2.326	1.747	5.443	5.331	3.628	4.876	3.291	5.316	2.353	2.374	0.903	5.938	1.019	0.790	3.406
3811	chr13	3748634	3751893	+	0	NA	Intergenic	Intergenic	54055	NM_027416	70405	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	6.866	1.444	0.572	3.723	4.704	2.547	4.899	5.381	6.031	6.065	5.643	2.427	5.479	9.251	5.057	6.788	4.923	7.013	1.271	1.992	1.027	2.009	1.284	0.463	7.067
7107	chr18	34008384	34011433	+	0	NA	Intergenic	Intergenic	-2702	NM_013512	13824	Mm.3465	NM_013512	ENSMUSG00000024376	Epb41l4a	Epb4.1l4|Epb4.1l4a|NBL4	erythrocyte membrane protein band 4.1 like 4a	protein-coding	3.894	0.669	0.380	2.473	2.073	1.339	4.038	3.800	3.770	3.297	5.094	4.103	5.055	3.790	2.980	3.903	3.180	4.928	0.904	0.850	0.378	0.874	0.886	0.592	3.980
7462	chr19	3808824	3813821	+	0	NA	intron (NM_144871, intron 11 of 11)	intron (NM_144871, intron 11 of 11)	-40451	NM_001271496	12660	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	6.628	0.861	0.557	4.978	5.082	3.378	8.641	9.188	6.445	7.009	4.114	1.592	7.113	10.769	9.369	10.143	7.512	10.105	0.610	0.673	0.588	1.137	0.861	0.515	11.878
6149	chr16	62806707	62809023	+	0	NA	intron (NM_026577, intron 5 of 9)	intron (NM_026577, intron 5 of 9)	-6811	NM_026588	68159	Mm.386793	NM_026588	ENSMUSG00000047854	Stx19	A030009B12Rik	syntaxin 19	protein-coding	6.740	1.090	0.446	3.718	4.281	1.940	5.611	7.752	4.876	5.012	2.193	2.039	7.490	7.986	8.091	9.743	6.444	8.198	8.169	4.576	1.937	6.945	5.246	2.885	7.245
572	chr1	129871209	129875741	+	0	NA	intron (NM_172485, intron 12 of 27)	intron (NM_172485, intron 12 of 27)	549568	NM_007827	13137	Mm.436759	NM_007827	ENSMUSG00000026401	Cd55b	AI323748|Daf|Daf-TM|Daf2|TM-DAF	CD55 molecule, decay accelerating factor for complement B	protein-coding	4.973	nan	0.433	2.041	2.168	1.004	3.061	4.693	2.136	2.409	1.877	0.811	3.479	3.415	3.690	4.512	3.396	3.636	nan	0.951	0.541	1.309	0.528	0.372	2.482
3762	chr12	113898393	113899519	+	0	NA	Intergenic	Lx3C|LINE|L1	355048	NM_174885	238406	Mm.188683	NM_174885	ENSMUSG00000043945	Adam6a	Adam6|tMDCIV	a disintegrin and metallopeptidase domain 6A	protein-coding	1.462	1.556	0.972	2.101	1.967	1.710	2.206	2.415	1.585	2.585	1.401	1.000	2.811	3.897	2.820	5.856	3.177	1.713	1.429	0.832	0.326	0.846	1.229	0.770	5.601
15628	chr9	122309848	122310718	+	0	NA	Intergenic	Intergenic	-15860	NM_133979	102566	Mm.87676	NM_133979	ENSMUSG00000037949	Ano10	AI604832|Tmem16k	anoctamin 10	protein-coding	1.980	0.938	0.380	1.138	0.900	0.320	1.299	4.468	1.547	2.453	6.157	1.768	1.808	3.776	2.095	3.057	1.333	3.219	0.808	0.928	0.820	1.707	nan	0.198	3.547
8108	chr2	31019507	31021313	+	0	NA	intron (NM_028846, intron 23 of 24)	intron (NM_028846, intron 23 of 24)	38131	NM_028846	74270	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	4.693	8.049	2.246	4.898	2.126	1.514	3.421	2.458	3.227	4.430	2.644	2.469	1.891	2.130	2.766	3.700	2.812	5.007	2.812	1.289	1.018	1.803	1.182	0.587	5.753
5415	chr15	78811527	78819409	+	0	NA	Intergenic	L1MB5|LINE|L1	-12426	NM_130859	105844	Mm.17629	NM_130859	ENSMUSG00000033170	Card10	AI449026|Bimp1|Carma3	caspase recruitment domain family, member 10	protein-coding	nan	nan	1.595	nan	1.656	0.970	nan	5.852	2.225	nan	nan	1.744	4.210	nan	4.218	4.578	nan	3.738	4.186	2.380	2.109	nan	2.616	1.968	4.927
3984	chr13	37710117	37717830	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-112065	NM_026830	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	5.020	nan	1.599	3.446	4.621	2.877	nan	6.280	nan	4.895	5.848	4.492	3.976	5.460	3.237	4.692	3.258	3.426	1.146	1.816	1.778	0.928	1.131	1.080	nan
15208	chr9	65408592	65410707	+	0	NA	intron (NM_001162923, intron 4 of 4)	(TC)n|Simple_repeat|Simple_repeat	11161	NM_001033158	70784	Mm.35827	NM_001033158	ENSMUSG00000041696	Rasl12	4631404I11Rik	RAS-like, family 12	protein-coding	4.158	9.198	4.105	4.504	1.117	0.652	1.895	2.497	1.920	2.667	3.121	1.512	1.263	2.143	2.651	2.517	1.573	2.389	5.470	5.318	3.943	9.052	5.602	3.985	2.988
4159	chr13	54792950	54796433	+	0	NA	intron (NM_028841, intron 4 of 7)	intron (NM_028841, intron 4 of 7)	5286	NM_028841	74257	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	nan	12.848	2.831	8.311	2.139	0.783	4.448	5.411	4.405	7.322	6.589	3.089	5.359	6.068	7.460	8.937	3.133	8.136	4.008	1.546	1.133	4.913	1.403	1.434	12.424
5667	chr15	100145955	100148358	+	0	NA	intron (NM_001159361, intron 4 of 37)	intron (NM_001159361, intron 4 of 37)	-7240	NM_172819	239667	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	6.654	0.674	0.365	4.907	2.679	1.677	4.963	4.304	4.724	6.132	1.388	1.196	8.127	8.058	5.785	6.718	6.328	7.683	1.265	1.462	0.702	2.815	1.553	1.562	6.316
9082	chr2	174262251	174265065	+	0	NA	Intergenic	Intergenic	3467	NR_029646	723906		NR_029646	ENSMUSG00000065521	Mir296	Mirn296|mir-296|mmu-mir-296	microRNA 296	ncRNA	9.180	19.805	6.180	8.403	4.816	2.139	4.716	7.236	4.876	7.310	3.689	1.814	5.599	9.835	8.866	12.295	6.172	8.289	5.718	3.335	3.240	5.656	2.895	2.766	13.245
7029	chr18	12309614	12313671	+	0	NA	Intergenic	Lx4A|LINE|L1	-5922	NM_001190371	225187	Mm.53865	NM_001190371	ENSMUSG00000057766	Ankrd29	G630054C21|G630054C21Rik|Gm95	ankyrin repeat domain 29	protein-coding	8.035	1.290	0.477	3.666	2.522	1.470	1.686	6.858	2.146	4.007	4.720	2.898	3.171	4.274	3.309	4.701	4.376	5.381	0.701	0.344	0.363	0.432	0.548	0.509	5.608
2549	chr11	83669093	83671417	+	0	NA	Intergenic	L1M2|LINE|L1	7671	NM_013652	20303	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	2.963	0.462	0.368	nan	4.635	2.266	3.325	3.691	3.523	3.765	1.659	1.109	3.703	4.749	3.708	4.629	3.316	3.625	0.626	1.375	1.019	nan	0.706	0.853	3.172
10976	chr4	154000283	154013420	+	0	NA	3' UTR (NM_177673, exon 22 of 22)	3' UTR (NM_177673, exon 22 of 22)	-4952	NM_201226	72946	Mm.260690	NM_201226	ENSMUSG00000029028	Lrrc47	2900010D03Rik|AA960559|mKIAA1185	leucine rich repeat containing 47	protein-coding	7.177	0.440	0.276	7.396	4.753	2.649	10.479	8.097	7.172	13.295	3.039	2.737	7.665	9.303	9.445	11.311	5.914	11.210	0.583	0.474	0.487	0.595	0.370	0.399	16.791
5947	chr16	25481876	25484933	+	0	NA	Intergenic	Intergenic	196587	NM_175165	71338	Mm.126851	NM_175165	ENSMUSG00000048399	Tprg	5430420C16Rik|Tprg1	transformation related protein 63 regulated	protein-coding	2.088	0.652	0.458	1.333	2.186	0.631	3.159	4.197	4.264	3.045	4.138	3.125	3.073	5.172	3.016	3.124	1.257	4.263	0.935	0.499	0.405	0.820	nan	0.506	1.684
12506	chr6	96018391	96019445	+	0	NA	Intergenic	Intergenic	-94236	NM_182808	320265	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	2.036	0.545	0.698	1.279	0.633	0.373	0.446	1.670	1.238	1.119	0.411	0.383	2.629	3.185	nan	1.774	2.291	1.547	nan	nan	1.127	0.549	0.698	1.845	1.798
10005	chr4	41256138	41263016	+	0	NA	intron (NM_026872, intron 1 of 28)	intron (NM_026872, intron 1 of 28)	15558	NM_026872	68926	Mm.41864	NM_026872	ENSMUSG00000028433	Ubap2	1190005K07Rik|AA408600|AU045235|UBAP-2|mKIAA1491	ubiquitin-associated protein 2	protein-coding	4.559	11.693	7.325	4.671	2.300	1.877	3.571	4.238	2.652	3.707	3.689	2.264	3.133	4.624	4.002	nan	2.763	nan	2.366	2.011	1.931	2.124	1.642	1.586	6.073
8924	chr2	160543543	160546103	+	0	NA	Intergenic	Intergenic	-101074	NM_009408	21969	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	5.048	0.895	0.524	3.924	1.994	2.166	3.981	4.491	5.130	nan	3.266	1.497	7.008	4.165	5.062	7.612	5.783	6.355	nan	0.271	0.706	1.338	0.412	0.445	4.493
6564	chr17	34384320	34388289	+	0	NA	TTS (NM_001111094)	TTS (NM_001111094)	9172	NM_001111094	100038862	Mm.440426	NM_201405	ENSMUSG00000062638	Btnl1	Btnl3|Gm316|Gm33	butyrophilin-like 1	protein-coding	nan	6.948	3.833	0.438	0.435	0.265	0.793	0.395	0.346	0.620	0.206	0.144	0.739	0.860	0.634	0.672	0.531	1.065	0.557	0.841	0.896	0.377	0.343	0.381	0.984
11723	chr5	124955504	124962141	+	0	NA	Intergenic	Intergenic	-44653	NM_028443	73121	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	4.513	0.673	0.475	3.716	3.080	2.204	5.225	4.936	3.315	nan	1.603	1.601	4.622	6.280	nan	6.177	nan	nan	nan	0.697	0.738	0.937	nan	1.075	nan
9891	chr3	157692839	157695410	+	0	NA	Intergenic	Intergenic	127232	NM_011196	19218	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	8.371	8.070	4.073	6.418	7.853	3.890	7.758	5.669	5.901	8.495	4.570	3.563	8.279	8.606	6.536	6.272	5.974	8.437	4.711	3.728	2.324	3.915	4.515	3.567	8.128
7275	chr18	58818729	58820038	+	0	NA	Intergenic	Intergenic	-16980	NM_175506	240322	Mm.71963	NM_175506	ENSMUSG00000053441	Adamts19	4831407I23Rik|AU015154|D230034E10Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 19	protein-coding	6.213	10.271	3.530	8.619	2.886	2.340	4.861	7.149	5.318	12.007	4.192	2.032	6.843	4.341	7.803	8.596	5.289	7.122	5.433	2.282	2.603	6.420	3.210	5.855	14.435
1472	chr10	79313558	79322296	+	0	NA	Intergenic	IAPEY4_I-int|LTR|ERVK	-38664	NM_001101572	624845	Mm.469866	NM_001101572	ENSMUSG00000091468	Vmn2r82	EG624845	vomeronasal 2, receptor 82	protein-coding	10.416	11.322	3.181	11.310	4.060	2.400	6.493	7.755	5.810	9.070	7.274	4.542	7.325	9.323	9.478	10.222	5.643	9.464	6.833	2.897	3.485	7.330	4.505	4.328	13.901
3684	chr12	104893075	104894425	+	0	NA	Intergenic	Intergenic	-28674	NR_104435	94040	Mm.244078	NM_053155	ENSMUSG00000021097	Clmn	9330188N17Rik|AI428889|AI788815|mKIAA1188	calmin	protein-coding	1.243	0.534	0.289	nan	0.212	0.186	1.423	2.383	nan	nan	0.426	0.184	3.086	3.658	2.626	2.454	2.971	1.603	0.746	0.436	0.340	0.514	0.443	0.355	4.755
13234	chr7	57096072	57100474	+	0	NA	intron (NM_008074, intron 3 of 9)	RMER5|LTR|ERV1	288598	NM_008074	14407	Mm.434343	NM_008074	ENSMUSG00000055026	Gabrg3	B230362M20Rik|Gabrg-3	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 3	protein-coding	nan	3.077	1.634	0.609	0.379	0.160	0.427	0.559	0.794	0.618	0.860	0.935	0.197	0.237	0.610	nan	0.609	0.579	7.110	2.185	1.789	5.080	3.891	3.157	0.545
11290	chr5	66160426	66163820	+	0	NA	Intergenic	RSINE1|SINE|B4	-10169	NM_001127382	245945	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	4.705	0.767	0.843	3.828	4.553	3.138	5.454	5.648	5.057	5.868	1.433	0.964	5.064	9.379	4.722	6.544	5.390	5.695	1.280	1.532	0.640	nan	1.537	1.009	3.217
8401	chr2	84025471	84027417	+	0	NA	Intergenic	Intergenic	-85218	NM_027964	71861	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	2.380	0.870	0.463	3.751	0.753	0.201	0.816	0.876	2.332	2.254	0.869	0.807	1.049	1.295	1.247	1.625	1.578	3.994	0.570	0.348	0.126	0.388	0.266	0.123	1.111
2622	chr11	88837059	88838801	+	0	NA	intron (NR_104310, intron 6 of 11)	intron (NR_104310, intron 6 of 11)	13573	NM_009648	11640	Mm.2969	NM_009648	ENSMUSG00000018428	Akap1	AKAP121|AKAP84|Akap|C76494|C81186|DAKAP1|S-AKAP84	A kinase (PRKA) anchor protein 1	protein-coding	nan	0.859	0.744	nan	2.155	1.049	1.910	1.388	3.845	4.710	0.376	0.654	4.633	3.119	2.001	4.677	4.390	3.300	0.586	0.498	0.400	nan	0.641	0.476	3.479
13431	chr7	97165076	97175625	+	0	NA	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	88599	NM_010248	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	10.443	2.882	2.010	5.538	6.641	4.733	6.422	11.091	6.693	9.026	5.625	3.573	7.525	7.863	5.447	5.424	7.476	6.107	nan	2.386	1.482	1.033	1.746	1.509	4.001
8092	chr2	30561845	30578171	+	0	NA	Intergenic	B4|SINE|B4	-25036	NM_030137	78617	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	9.791	4.656	1.774	9.545	6.455	3.631	9.020	11.450	nan	9.282	8.764	4.806	8.728	10.419	9.468	10.998	8.295	9.695	4.089	3.833	3.671	6.650	3.494	3.581	14.887
2799	chr11	100946262	100953362	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-10272	NM_011486	20848	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	3.815	nan	1.077	3.929	3.251	1.847	3.301	5.162	3.537	4.176	2.000	1.016	3.666	6.739	5.201	5.778	nan	4.330	2.083	nan	0.708	3.260	nan	nan	5.926
8101	chr2	30837925	30842968	+	0	NA	Intergenic	Intergenic	-4921	NM_009116	20204	Mm.1802	NM_009116	ENSMUSG00000039476	Prrx2	Prx2|S8	paired related homeobox 2	protein-coding	5.522	1.752	1.006	3.381	4.841	3.389	5.814	9.287	nan	4.067	2.262	2.030	5.748	7.120	6.099	8.003	6.967	5.003	2.640	1.590	1.934	3.019	2.498	2.522	8.648
15733	chrX	54557731	54560831	+	0	NA	Intergenic	L1Md_F3|LINE|L1	28073	NM_001166601	100040894	Mm.481748	NM_001166601	ENSMUSG00000094714	Gm16430	EG666120	predicted gene 16430	protein-coding	2.122	5.945	3.498	1.499	1.054	0.517	0.548	0.815	1.002	1.487	0.808	0.493	1.023	0.865	0.908	1.336	1.131	1.085	0.522	1.359	1.063	0.767	0.371	0.306	1.153
15070	chr9	50549106	50562256	+	0	NA	promoter-TSS (NM_133217)	promoter-TSS (NM_133217)	-543	NM_133217	170752	Mm.390149	NM_133217	ENSMUSG00000032066	Bco2	B-diox-II|Bcdo2|Bcmo2|CMO2	beta-carotene oxygenase 2	protein-coding	6.948	0.979	0.369	4.639	2.941	1.535	2.730	6.242	3.987	7.373	2.601	1.545	4.362	7.358	6.071	7.981	5.127	7.510	4.308	3.115	2.071	nan	2.845	2.274	9.068
4466	chr14	9250417	9252091	+	0	NA	Intergenic	Intergenic	584864	NR_045968	74859	Mm.84041	NR_045968	ENSMUSG00000097898	4930455B14Rik	1700027C12Rik	RIKEN cDNA 4930455B14 gene	ncRNA	2.068	0.476	0.457	1.010	0.962	0.309	3.128	3.979	2.873	1.282	5.573	3.758	1.366	1.904	2.390	1.879	1.032	3.128	0.747	0.498	0.358	0.561	0.563	0.333	2.161
5601	chr15	96830894	96832090	+	0	NA	Intergenic	Intergenic	-131794	NM_175121	67760	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	4.651	0.992	0.480	4.045	1.105	0.588	7.136	5.012	4.016	3.617	2.542	0.696	7.762	4.965	5.036	5.025	4.989	6.221	0.576	0.532	0.560	0.867	0.440	0.157	2.885
13344	chr7	86303716	86305839	+	0	NA	Intergenic	Lx10|LINE|L1	2334	NM_001011866	258196	Mm.389956	NM_001011866	ENSMUSG00000054054	Olfr309	MOR251-4P	olfactory receptor 309	protein-coding	2.802	0.647	0.204	1.733	2.081	0.999	2.955	3.199	nan	4.340	0.893	1.339	5.003	4.811	3.320	3.957	nan	4.527	0.413	0.294	0.295	nan	0.189	0.044	1.215
14137	chr8	35170387	35172569	+	0	NA	Intergenic	RMER5|LTR|ERV1	-204263	NM_177741	244416	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	8.465	8.821	2.797	6.992	3.218	1.726	4.611	9.031	4.375	6.380	4.755	3.085	7.580	7.799	8.788	10.404	5.456	7.621	3.794	2.703	1.792	7.030	2.486	1.973	11.494
348	chr1	79634171	79636797	+	0	NA	intron (NM_183027, intron 1 of 4)	intron (NM_183027, intron 1 of 4)	36488	NM_183027	252903	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	4.172	0.951	0.639	1.980	2.030	0.500	2.963	4.035	3.294	2.171	5.068	4.743	4.723	3.194	3.325	4.690	1.973	4.990	nan	nan	0.417	1.089	nan	0.344	2.229
11389	chr5	87964115	87966180	+	0	NA	intron (NR_045924, intron 1 of 4)	intron (NR_045924, intron 1 of 4)	14204	NR_045924	73471	Mm.396240	NR_045924	ENSMUSG00000099605	1700066N21Rik	-	RIKEN cDNA 1700066N21 gene	ncRNA	0.827	0.346	0.443	0.407	0.058	0.037	2.940	3.356	0.976	0.546	1.256	4.246	2.717	1.133	1.414	0.746	2.295	1.320	0.705	0.420	0.235	0.151	0.379	0.046	0.199
6735	chr17	53705165	53710489	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-8682	NR_073205	211496	Mm.251553	NM_177599	ENSMUSG00000062036	4932415M13Rik	-	RIKEN cDNA 4932415M13 gene	ncRNA	7.469	11.279	4.915	8.672	4.445	2.838	8.252	6.549	4.282	8.395	3.913	3.041	5.257	8.390	7.752	8.726	7.402	5.957	4.489	3.048	3.350	4.608	2.787	3.151	12.230
10953	chr4	151413465	151416464	+	0	NA	intron (NM_001081557, intron 5 of 23)	B3|SINE|B2	325394	NM_001308446	105704528	Mm.415128	NM_001308446	ENSMUSG00000078491	Gm13090	OTTMUSG00000010356	predicted gene 13090	protein-coding	2.061	9.549	3.669	3.154	1.289	1.436	1.880	1.689	1.329	3.263	2.052	1.198	1.439	1.380	2.095	2.918	1.065	2.406	1.916	0.597	0.965	2.456	0.691	1.097	4.287
6190	chr16	90692988	90698010	+	0	NA	Intergenic	Intergenic	31872	NM_025642	66578	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	10.968	nan	0.516	4.894	2.014	0.857	8.277	7.072	3.936	5.146	0.741	0.867	11.917	8.231	7.294	11.715	9.496	7.812	1.314	1.059	0.702	nan	1.160	0.662	9.156
14202	chr8	47177283	47180075	+	0	NA	Intergenic	Intergenic	110723	NM_001286376	71069	Mm.23973	NM_175162	ENSMUSG00000038143	Stox2	4933409N07Rik|AI449080|AI835114|mKIAA1392	storkhead box 2	protein-coding	5.501	0.803	0.339	5.329	2.563	1.431	3.343	4.418	5.631	6.620	1.083	0.596	9.143	5.609	6.156	9.601	4.764	8.667	1.284	0.919	0.536	2.997	0.524	0.737	8.541
12849	chr6	145829516	145835884	+	0	NA	Intergenic	Intergenic	24317	NM_027760	71323	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	nan	1.613	0.800	nan	1.670	1.242	3.065	nan	2.012	nan	3.672	1.904	nan	6.711	4.288	nan	4.379	3.133	2.490	nan	0.819	nan	1.906	1.101	nan
7353	chr18	68097529	68099085	+	0	NA	intron (NM_172631, intron 2 of 5)	intron (NM_172631, intron 2 of 5)	162666	NR_106078	102465702		NR_106078	ENSMUSG00000098253	Mir7219	Gm27613|mmu-mir-7219	microRNA 7219	ncRNA	4.440	1.181	0.517	4.395	1.024	0.524	3.408	6.248	3.462	3.793	1.142	1.512	3.561	3.963	3.294	5.612	2.327	3.958	5.300	1.868	0.423	4.870	2.625	1.583	3.826
4496	chr14	20946829	20949404	+	0	NA	intron (NM_009502, intron 1 of 20)	intron (NM_009502, intron 1 of 20)	18683	NM_009502	22330	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	1.063	0.961	0.220	1.257	1.096	0.447	1.485	1.913	nan	1.034	1.715	0.609	1.542	1.628	1.722	3.765	1.986	1.457	0.916	0.415	0.553	nan	0.418	0.268	2.207
1090	chr10	8805801	8807395	+	0	NA	intron (NM_175155, intron 4 of 19)	intron (NM_175155, intron 4 of 19)	79472	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	2.634	0.606	0.320	2.000	1.836	0.202	2.416	2.027	2.874	2.370	0.376	0.308	4.535	3.970	2.844	2.475	2.469	3.094	1.316	0.359	0.594	0.933	0.572	0.600	1.907
627	chr1	134920676	134922385	+	0	NA	intron (NM_001081307, intron 1 of 23)	intron (NM_001081307, intron 1 of 23)	34410	NM_001081307	329251	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	12.713	14.112	8.887	nan	10.148	7.541	8.828	7.374	6.060	9.373	8.065	5.996	7.379	9.022	7.438	10.785	9.971	6.388	5.916	5.592	6.509	4.253	5.666	6.513	9.630
993	chr1	185898780	185900898	+	0	NA	intron (NR_030555, intron 5 of 6)	intron (NR_030555, intron 5 of 6)	217471	NM_146106	226791	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	1.757	6.349	6.247	1.506	0.940	0.581	0.775	0.535	1.274	1.096	1.211	1.131	0.856	0.913	0.857	nan	1.483	2.420	0.808	0.569	0.477	0.733	0.473	0.408	1.766
1308	chr10	58070068	58074884	+	0	NA	Intergenic	Intergenic	160199	NM_001081954	664783	Mm.482575	NM_001081954		Dux	AW822073|Dux4|Duxbl|EG664783	double homeobox	protein-coding	4.655	1.465	0.485	3.547	1.592	0.505	3.405	1.771	2.911	3.455	2.513	1.078	5.035	4.131	4.533	7.430	4.483	5.931	nan	0.318	0.362	1.238	0.372	0.077	8.610
12517	chr6	97764676	97769060	+	0	NA	Intergenic	Intergenic	-40190	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	4.394	1.036	0.641	2.923	1.994	0.838	3.778	1.857	2.647	2.471	1.149	0.384	1.669	4.154	6.739	9.314	4.223	5.426	nan	nan	0.224	0.897	0.451	0.175	3.451
13350	chr7	86505290	86509989	+	0	NA	Intergenic	Intergenic	-18090	NM_001011751	257905	Mm.377294	NM_001011751	ENSMUSG00000062878	Olfr298	MOR219-4	olfactory receptor 298	protein-coding	3.298	1.415	0.335	3.119	3.634	1.609	4.778	4.940	nan	3.983	1.097	0.961	6.739	6.449	7.099	5.460	nan	6.175	1.691	0.877	0.535	nan	0.382	0.501	6.486
6204	chr16	91824300	91829985	+	0	NA	intron (NM_001110275, intron 14 of 28)	intron (NM_001110275, intron 14 of 28)	97771	NM_010587	16443	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	7.052	nan	0.611	3.071	3.802	2.882	4.781	5.553	3.334	4.847	0.827	1.113	7.548	6.145	2.516	3.840	4.666	nan	1.100	1.241	0.960	nan	1.171	1.007	5.816
14093	chr8	26310644	26313456	+	0	NA	Intergenic	Intergenic	153881	NM_199042	73754	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	5.614	11.638	3.755	8.052	2.880	2.226	3.621	5.606	4.112	7.911	2.745	2.002	4.313	6.079	6.946	7.586	4.500	6.717	2.764	2.368	2.372	nan	2.175	2.492	10.995
6844	chr17	72857612	72864860	+	0	NA	Intergenic	Intergenic	24532	NM_027166	383295	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee-like 5 (Drosophila)	protein-coding	3.256	0.485	0.183	0.336	0.079	0.069	1.390	1.700	nan	1.130	0.337	0.163	4.431	nan	2.430	1.606	3.345	1.121	0.571	0.450	0.203	0.598	0.245	0.125	2.681
14081	chr8	24792738	24794815	+	0	NA	intron (NM_001272059, intron 12 of 18)	L1Md_F2|LINE|L1	30593	NM_001272058	11499	Mm.143889	NM_007401	ENSMUSG00000031554	Adam5	tMDC II|tMDCII	a disintegrin and metallopeptidase domain 5	protein-coding	5.615	nan	0.494	0.332	1.349	0.701	6.787	1.768	1.608	2.200	0.437	0.476	5.809	4.301	2.559	2.210	7.606	1.719	1.160	1.547	0.788	nan	2.199	1.687	5.545
4458	chr14	8912830	8916048	+	0	NA	Intergenic	L1Md_F2|LINE|L1	248049	NR_045968	74859	Mm.84041	NR_045968	ENSMUSG00000097898	4930455B14Rik	1700027C12Rik	RIKEN cDNA 4930455B14 gene	ncRNA	5.842	4.264	1.878	5.693	2.277	1.420	3.455	7.044	3.475	4.853	2.929	2.107	4.609	6.745	5.465	6.446	3.771	4.699	2.109	1.840	1.642	2.677	1.832	1.188	8.158
13953	chr7	152112650	152118717	+	0	NA	Intergenic	Intergenic	6800848	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	2.407	nan	0.484	nan	1.345	0.724	3.532	6.257	3.709	3.800	1.200	1.679	4.443	4.536	5.688	5.308	3.115	3.530	1.499	0.451	0.403	1.621	nan	0.359	6.459
12914	chr7	4964583	4968821	+	0	NA	3' UTR (NM_001200041, exon 4 of 4)	3' UTR (NM_001200041, exon 4 of 4)	-2354	NM_001146329	381836	Mm.297829	NM_001146329	ENSMUSG00000030433	Sbk2	Gm1079|Sgk069	SH3-binding domain kinase family, member 2	protein-coding	7.686	7.391	2.964	6.894	4.064	2.309	6.499	9.622	3.722	7.385	5.389	2.028	8.293	9.854	7.112	7.898	7.189	6.747	3.314	2.451	1.629	3.924	3.012	2.599	9.588
5792	chr16	10968307	10969606	+	0	NA	intron (NM_019980, intron 1 of 3)	RSINE1|SINE|B4	24165	NM_019980	56722	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	5.544	6.430	1.556	3.397	1.435	0.750	2.630	2.785	2.587	3.750	1.596	2.298	4.220	3.565	3.070	5.100	2.116	4.499	1.053	0.665	0.849	1.694	0.834	0.771	6.656
1425	chr10	74689289	74697346	+	0	NA	Intergenic	Intergenic	-273914	NM_010311	14687	Mm.32595	NM_010311	ENSMUSG00000040009	Gnaz	AI847979|Gz	guanine nucleotide binding protein, alpha z subunit	protein-coding	3.899	1.533	0.764	nan	1.669	1.039	2.531	5.871	2.323	2.613	2.085	1.482	3.951	3.847	nan	2.543	2.388	2.895	nan	2.474	1.172	3.005	3.481	2.342	2.524
12483	chr6	93206487	93208613	+	0	NA	Intergenic	Intergenic	266968	NR_015530	330385	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	3.549	0.510	0.248	1.660	1.522	0.607	9.032	4.165	2.818	2.729	1.010	1.649	6.915	4.634	9.212	12.075	4.805	5.833	nan	nan	0.115	0.782	0.241	0.061	4.819
13796	chr7	136794729	136804418	+	0	NA	Intergenic	Intergenic	-88969	NR_046021	621677	Mm.207290	NR_046021	ENSMUSG00000110101	Gm6249	EG621677	predicted gene 6249	ncRNA	3.578	nan	0.270	3.117	1.720	0.793	1.778	3.846	nan	4.606	2.571	0.771	3.564	4.448	6.915	9.962	3.889	8.191	1.358	1.120	0.799	2.664	0.691	0.439	6.693
4826	chr14	71165321	71168617	+	0	NA	Intergenic	Intergenic	-84304	NR_046075	100043132	Mm.399336	NR_046075		Gm4251	-	predicted gene 4251	ncRNA	6.550	6.517	2.402	5.078	4.837	3.495	7.725	9.803	4.524	9.034	5.180	3.952	6.049	7.742	7.153	9.553	4.364	6.499	3.035	nan	2.688	3.473	2.566	2.953	9.305
13294	chr7	75217982	75220751	+	0	NA	intron (NM_153579, intron 1 of 12)	intron (NM_153579, intron 1 of 12)	89020	NM_001109753	64176	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	4.647	0.886	0.232	nan	0.642	0.091	2.526	6.494	1.598	1.933	1.767	2.330	5.242	4.651	3.979	2.704	6.828	2.121	0.996	0.755	0.303	2.310	0.787	0.522	3.759
9970	chr4	32604974	32607196	+	0	NA	Intergenic	MTC|LTR|ERVL-MaLR	-3703	NM_010289	14610	Mm.377084	NM_010289	ENSMUSG00000051056	Gja10	Cx-57|Cx59|cx57	gap junction protein, alpha 10	protein-coding	5.308	1.344	1.098	3.193	7.291	4.706	2.573	1.519	1.431	3.562	2.154	2.334	2.886	6.010	1.527	2.016	1.476	2.532	3.338	2.886	1.692	2.175	1.337	1.273	2.584
10848	chr4	144480709	144500620	+	0	NA	Intergenic	Intergenic	-26908	NM_001085503	230883	Mm.457844	NM_001085503	ENSMUSG00000078507	Aadacl3	Gm435	arylacetamide deacetylase-like 3	protein-coding	6.748	nan	1.651	7.132	5.662	3.089	6.421	5.731	5.555	8.518	6.640	3.216	4.877	9.069	6.392	7.630	3.770	7.109	1.545	1.637	1.075	1.481	1.508	1.339	7.971
12743	chr6	128710236	128711512	+	0	NA	intron (NM_001099918, intron 3 of 5)	intron (NM_001099918, intron 3 of 5)	12172	NM_001099918	100043861	Mm.66911	NM_001099918	ENSMUSG00000079299	Klrb1	4930431A04Rik|Gm4696|Klrb1g|Klrb6|Ly-55|Ly55|NKR-P1G|Nkrp-1e|Nkrp1g	killer cell lectin-like receptor subfamily B member 1	protein-coding	6.004	7.627	4.509	5.979	7.147	2.724	5.174	5.629	3.112	4.609	4.455	1.276	4.673	8.426	6.992	8.915	6.502	4.623	2.076	3.337	1.897	5.105	3.399	2.745	5.597
3083	chr11	119576437	119580287	+	0	NA	Intergenic	RMER19B|LTR|ERVK	-24543	NM_001306081	74370	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	5.223	nan	0.372	4.437	6.475	3.653	5.833	4.878	5.662	6.624	2.596	2.804	6.488	8.877	6.867	5.958	4.656	6.819	0.741	nan	0.515	0.752	0.832	0.520	4.761
15035	chr9	45307502	45317467	+	0	NA	Intergenic	B4A|SINE|B4	-6616	NM_001013373	214531	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	1.769	1.135	0.651	1.184	0.365	0.211	0.960	1.213	1.780	1.863	2.555	2.448	1.134	0.803	nan	nan	0.704	2.490	6.474	3.722	3.081	nan	6.189	4.400	nan
13723	chr7	130492039	130493988	+	0	NA	intron (NM_001029895, intron 7 of 11)	intron (NM_001029895, intron 7 of 11)	26567	NM_001136054	11907	Mm.216321	NM_013799	ENSMUSG00000030850	Ate1	AI225793|AW547406	arginyltransferase 1	protein-coding	2.717	1.691	1.567	1.769	4.086	2.373	1.259	2.653	1.699	2.581	1.039	0.667	1.199	4.550	2.461	2.008	2.443	2.719	0.859	1.602	0.566	0.679	1.207	0.514	2.004
9067	chr2	172170351	172171925	+	0	NA	Intergenic	MIRc|SINE|MIR	-77354	NM_008561	17201	Mm.57183	NM_008561	ENSMUSG00000038537	Mc3r	MC3-R	melanocortin 3 receptor	protein-coding	5.212	4.249	1.616	6.450	1.263	1.069	4.401	5.305	2.645	5.288	2.121	1.727	5.611	5.128	6.567	7.085	3.633	nan	nan	0.491	1.282	2.817	1.412	1.545	13.799
11236	chr5	53514933	53522568	+	0	NA	Intergenic	ID_B1|SINE|B4	-37029	NM_001080928	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.576	1.514	0.701	0.413	0.405	0.195	0.803	0.747	0.658	0.694	0.404	0.356	0.563	0.649	0.800	nan	0.715	0.829	4.666	4.281	2.826	4.418	5.208	3.652	0.674
1842	chr10	126817154	126819140	+	0	NA	Intergenic	Intergenic	-24437	NR_131015	75813	Mm.159583	NR_131015		4930484H19Rik	-	RIKEN cDNA 4930484H19 gene	ncRNA	6.123	8.804	3.022	5.725	5.708	4.771	5.362	4.631	4.001	13.353	4.286	2.766	5.349	7.284	6.183	6.991	5.439	6.892	3.324	1.319	3.892	4.001	2.195	5.003	10.900
14267	chr8	69245555	69250099	+	0	NA	Intergenic	MERV1_I-int|LTR|ERV1	-23253	NM_172491	211135	Mm.294970	NM_172491	ENSMUSG00000079038	D130040H23Rik	-	RIKEN cDNA D130040H23 gene	protein-coding	0.517	0.417	0.798	0.232	0.231	0.107	0.208	0.470	0.294	0.284	0.351	0.175	0.171	0.211	0.224	0.498	0.519	0.283	6.673	5.762	4.798	6.090	8.686	8.712	nan
8741	chr2	145618840	145622413	+	0	NA	intron (NM_053195, intron 15 of 16)	PB1D10|SINE|Alu	-65644	NM_001037929	627302	Mm.445953	NM_001037929		Gm14092	OTTMUSG00000015643	predicted gene 14092	protein-coding	3.979	0.989	0.459	4.054	1.213	0.895	3.438	4.955	2.759	2.493	1.219	1.117	2.393	1.959	3.659	3.375	1.927	5.180	nan	0.979	0.346	1.765	0.819	0.857	2.998
2143	chr11	49525161	49527413	+	0	NA	Intergenic	Lx4A|LINE|L1	2562	NM_207574	404337	Mm.278373	NM_207574	ENSMUSG00000107417	Olfr1383	MOR256-56	olfactory receptor 1383	protein-coding	9.759	11.065	5.130	8.738	9.719	8.376	10.216	10.015	7.159	12.481	9.009	5.458	8.454	10.857	8.532	8.887	9.504	nan	nan	7.006	8.098	nan	9.155	13.896	11.362
9658	chr3	105597565	105607070	+	0	NA	intron (NM_001039347, intron 2 of 6)	intron (NM_001039347, intron 2 of 6)	85254	NM_017397	53975	Mm.272826	NM_017397	ENSMUSG00000027905	Ddx20	GEMIN3|dp103	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	protein-coding	5.076	12.559	6.259	5.587	3.805	2.174	3.184	2.934	3.231	4.926	2.047	1.523	3.320	4.439	nan	3.809	3.469	4.728	1.936	2.400	1.432	1.746	1.669	1.600	4.096
11067	chr5	23893447	23895150	+	0	NA	intron (NR_037304, intron 2 of 4)	intron (NR_037304, intron 2 of 4)	42065	NR_028536	100217436		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	1.151	1.672	0.392	nan	1.287	0.688	1.200	2.689	2.277	2.932	2.619	1.891	1.058	1.263	2.447	2.036	0.885	2.328	5.655	2.141	2.656	3.753	4.110	4.395	2.725
9060	chr2	169985186	169986541	+	0	NA	Intergenic	Intergenic	-22676	NR_131974	446211	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	4.491	3.176	2.137	4.269	2.308	1.990	5.603	4.270	3.433	3.355	4.388	3.888	3.428	4.518	6.034	5.403	4.384	4.557	3.897	3.144	0.989	3.322	1.636	1.353	3.938
13701	chr7	126993371	126995564	+	0	NA	intron (NM_080638, intron 7 of 14)	RMER6A|LTR|ERVK	18553	NM_001347656	52858	Mm.28219	NM_026638	ENSMUSG00000030682	Cdipt	9530042F15Rik|D7Bwg0575e|Pis|Pis1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	protein-coding	4.589	1.585	0.737	4.971	4.277	3.146	3.284	4.906	4.285	4.362	2.414	1.479	4.507	4.071	3.720	4.750	4.652	5.810	0.952	0.519	0.703	0.478	0.611	0.935	4.043
3881	chr13	23661980	23665699	+	0	NA	Intergenic	Lx2|LINE|L1	20120	NM_178189	319164	Mm.261973	NM_178189	ENSMUSG00000069270	Hist1h2ac	-	histone cluster 1, H2ac	protein-coding	3.472	6.642	2.158	5.724	3.362	1.613	2.519	3.023	3.555	3.034	3.602	1.788	3.735	3.680	5.414	4.376	2.485	6.347	7.158	1.480	0.743	5.705	2.268	1.450	3.657
14454	chr8	91538916	91543338	+	0	NA	intron (NM_011936, intron 8 of 8)	intron (NM_011936, intron 8 of 8)	227602	NM_011936	26383	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	4.616	0.388	0.175	1.130	0.701	0.445	4.184	3.263	nan	1.942	1.187	0.395	4.225	4.797	3.367	4.921	2.662	3.794	nan	0.217	0.235	0.284	0.156	0.185	5.965
12012	chr5	151964286	151979979	+	0	NA	Intergenic	Intergenic	-320924	NM_027009	69263	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	5.229	0.745	0.578	5.212	3.691	1.899	3.697	3.906	nan	6.097	2.855	1.395	4.897	7.549	5.395	nan	4.138	8.061	1.475	0.891	0.621	1.418	1.438	1.099	nan
9451	chr3	88451291	88453166	+	0	NA	intron (NM_001163491, intron 3 of 14)	intron (NM_001163491, intron 3 of 14)	3533	NM_013658	20351	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	1.167	8.101	6.217	1.053	1.084	0.561	0.587	0.874	1.344	1.819	0.714	0.430	0.901	1.453	1.428	1.312	1.298	1.346	nan	1.232	0.767	0.695	1.140	0.707	1.615
10420	chr4	117653453	117656886	+	0	NA	intron (NM_001285901, intron 7 of 7)	intron (NM_001285901, intron 7 of 7)	27056	NM_023178	66233	Mm.29142	NM_023178	ENSMUSG00000009640	Dmap1	1500016M21Rik|DNMAP1|DNMTAP1|Dmtap1|mKIAA1425	DNA methyltransferase 1-associated protein 1	protein-coding	2.328	0.888	0.388	3.002	3.721	1.750	4.270	2.630	4.001	4.504	2.294	3.914	3.514	7.754	4.502	nan	1.592	4.619	4.155	1.096	0.876	2.207	5.227	3.736	3.793
5318	chr15	74489103	74504178	+	0	NA	Intergenic	Intergenic	-8994	NR_144499	102634630		NR_144499		Gm32168	-	predicted gene, 32168	ncRNA	nan	nan	0.418	nan	0.317	0.152	nan	1.564	0.625	nan	nan	0.549	0.490	nan	0.814	0.961	nan	0.853	5.011	2.191	1.614	nan	2.425	1.742	1.212
10584	chr4	129944271	129947518	+	0	NA	Intergenic	Intergenic	-14480	NR_040647	72225	Mm.102193	NR_040647		1700003M07Rik	-	RIKEN cDNA 1700003M07 gene	ncRNA	1.970	0.606	0.404	1.705	1.250	0.877	3.685	2.275	1.952	2.071	5.586	3.795	1.766	2.465	nan	3.082	1.698	2.496	3.899	2.108	1.854	5.212	1.689	1.749	2.500
9362	chr3	65404620	65405678	+	0	NA	Intergenic	Intergenic	-12596	NM_026155	67437	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	2.446	1.143	0.555	1.320	1.098	1.152	0.989	2.912	2.035	1.974	1.050	0.660	1.740	3.634	1.420	1.589	1.502	2.227	1.230	0.845	0.827	1.165	0.576	0.195	1.900
12788	chr6	134865631	134885053	+	0	NA	intron (NM_001167699, intron 1 of 1)	Lx8|LINE|L1	12443	NR_074084	14760	Mm.4787	NM_008157	ENSMUSG00000032641	Gpr19	-	G protein-coupled receptor 19	protein-coding	4.991	7.365	3.116	5.513	3.755	2.200	5.088	6.871	4.376	5.869	6.323	4.228	6.998	6.656	nan	7.355	7.903	6.265	nan	6.393	4.671	7.871	8.735	7.007	nan
11952	chr5	147118086	147120596	+	0	NA	Intergenic	Intergenic	41995	NM_009087	20018	Mm.317557	NM_009087	ENSMUSG00000029642	Polr1d	1110003G10Rik|AC19|RPA16|Rpo1-3	polymerase (RNA) I polypeptide D	protein-coding	6.247	0.930	0.460	5.939	3.091	1.080	5.416	5.713	4.480	6.092	1.505	1.239	7.281	7.721	7.978	8.231	5.055	7.824	3.275	1.359	0.975	3.847	2.651	1.986	7.825
15690	chrX	13422091	13424716	+	0	NA	Intergenic	Lx4A|LINE|L1	-44269	NM_173415	236690	Mm.90233	NM_173415	ENSMUSG00000051228	Nyx	CLNP|CSNB1|CSNB4|nob	nyctalopin	protein-coding	4.785	4.342	1.193	5.409	3.040	1.397	3.916	4.300	3.050	8.419	1.938	1.191	3.927	4.810	5.034	6.723	2.913	5.134	3.165	1.296	1.199	4.290	1.864	1.635	9.105
10984	chr4	154543806	154554340	+	0	NA	intron (NM_001177995, intron 1 of 15)	intron (NM_001177995, intron 1 of 15)	87294	NR_045643	320939	Mm.436738	NR_045643		5930403L14Rik	-	RIKEN cDNA 5930403L14 gene	ncRNA	5.131	2.189	0.820	6.327	4.304	2.383	3.653	4.146	3.126	4.181	3.131	2.248	3.000	5.070	4.254	5.381	2.317	5.148	1.672	1.022	0.728	2.661	1.055	0.676	5.718
4223	chr13	63663871	63669049	+	0	NA	Intergenic	Intergenic	67838	NR_126476	75522	Mm.54259	NR_126476		1700024I08Rik	-	RIKEN cDNA 1700024I08 gene	ncRNA	8.760	10.972	3.502	10.236	3.184	1.419	2.578	8.216	5.759	13.758	5.694	4.216	7.051	10.268	8.741	11.325	5.742	9.330	6.358	3.351	3.132	5.932	3.621	4.897	18.884
5147	chr15	38512536	38517040	+	0	NA	intron (NR_125913, intron 1 of 11)	PB1D10|SINE|Alu	4478	NM_001301688	54375	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	7.273	0.963	0.732	1.622	1.172	0.991	10.637	6.927	4.162	6.171	8.404	3.526	12.306	8.189	7.002	7.549	8.831	5.787	2.158	1.451	0.889	3.274	1.215	0.705	5.003
5031	chr15	8516720	8520359	+	0	NA	Intergenic	Intergenic	-74076	NM_201232	71175	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	Nipped-B homolog (Drosophila)	protein-coding	4.824	4.352	1.933	3.763	2.919	1.980	4.970	6.154	2.215	4.050	2.002	1.052	4.632	5.839	4.744	4.425	3.794	3.517	7.167	5.968	5.039	6.375	7.742	7.492	6.026
10095	chr4	54960975	54962953	+	0	NA	intron (NM_172867, intron 1 of 12)	intron (NM_172867, intron 1 of 12)	14019	NM_172867	242466	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	8.982	1.715	0.593	4.912	4.107	2.633	9.159	7.491	3.322	6.024	4.378	0.755	5.812	9.926	5.224	7.594	3.769	5.549	5.519	5.125	2.886	2.160	8.804	8.494	10.880
14654	chr8	120235735	120244686	+	0	NA	Intergenic	Intergenic	-11980	NR_110496	434353	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	1.950	0.623	0.314	0.881	0.873	0.543	2.848	7.404	1.832	1.517	4.539	2.489	2.907	4.631	3.213	3.950	2.835	1.931	0.633	0.495	0.414	0.855	0.380	0.294	3.216
11206	chr5	43623818	43626584	+	0	NA	Intergenic	Intergenic	23279	NM_175425	109323	Mm.275553	NM_175425	ENSMUSG00000061535	C1qtnf7	5530401N20Rik|8430425G24Rik|Ctrp7	C1q and tumor necrosis factor related protein 7	protein-coding	9.210	17.720	4.457	15.149	4.566	4.113	10.746	9.250	5.783	26.187	11.442	5.929	6.514	10.247	10.447	13.127	6.102	11.862	8.818	2.075	7.315	9.202	4.794	13.260	21.374
12520	chr6	98570087	98571392	+	0	NA	Intergenic	Lx5b|LINE|L1	-227985	NM_001128092	330390	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	4.799	0.551	0.539	2.023	1.415	0.980	3.482	3.656	1.546	2.107	0.823	0.558	4.021	4.721	3.483	5.152	5.282	3.769	nan	nan	0.201	0.543	0.772	0.589	4.137
10409	chr4	116666482	116668129	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-15631	NM_021473	58810	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	6.498	4.194	1.789	5.741	3.318	3.405	5.018	6.787	3.764	6.378	3.405	1.964	5.040	6.985	5.786	6.893	4.173	5.088	4.352	3.565	4.173	5.956	3.788	4.409	8.170
752	chr1	155018156	155023482	+	0	NA	Intergenic	Intergenic	78817	NM_010500	15939	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	8.731	0.820	0.598	2.627	3.427	2.519	9.761	6.028	nan	4.011	2.957	1.597	7.369	8.431	6.822	10.610	7.529	6.270	nan	1.018	0.714	0.864	nan	0.576	7.629
2899	chr11	106298255	106301287	+	0	NA	TTS (NM_008117)	TTS (NM_008117)	2125	NM_008117	14599	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	3.995	2.116	1.218	nan	3.928	2.822	4.121	5.057	3.438	4.803	2.136	3.400	4.310	6.391	4.423	4.473	4.587	4.402	5.897	4.098	2.961	nan	5.065	4.607	2.373
3045	chr11	117736333	117745175	+	0	NA	intron (NM_198022, intron 10 of 21)	intron (NM_198022, intron 10 of 21)	39867	NM_181321	217353	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	4.916	nan	2.027	5.289	2.176	1.125	nan	nan	3.226	4.241	1.585	1.164	2.129	3.060	2.962	3.104	1.691	nan	3.411	nan	2.428	6.127	2.157	1.678	3.676
14411	chr8	87178660	87190171	+	0	NA	intron (NR_040697, intron 3 of 6)	intron (NR_040697, intron 3 of 6)	15435	NR_040697	100038706	Mm.334690	NR_040697	ENSMUSG00000099207	Gm10637	ENSMUSG00000074176	predicted gene 10637	ncRNA	12.714	10.345	3.637	12.135	6.929	4.769	12.248	13.662	nan	9.684	8.154	5.073	14.076	15.243	13.286	14.514	11.737	10.637	nan	4.582	4.162	8.936	4.146	3.914	15.630
9136	chr3	9000257	9003831	+	0	NA	intron (NM_001025263, intron 1 of 6)	intron (NM_001025263, intron 1 of 6)	2471	NM_009412	21985	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	4.497	5.280	3.126	3.476	3.695	1.486	4.976	6.252	4.329	3.749	5.028	3.541	4.872	5.545	4.772	3.646	3.970	4.740	6.717	5.434	1.608	5.137	6.328	3.608	3.115
379	chr1	87705097	87708150	+	0	NA	intron (NM_010566, intron 19 of 26)	intron (NM_010566, intron 19 of 26)	-49388	NM_029846	77040	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	7.400	1.356	0.640	4.842	2.642	1.244	3.636	4.515	3.745	3.122	1.756	2.884	6.730	5.126	4.669	6.930	5.565	7.375	1.128	0.958	0.340	nan	0.485	0.398	3.596
9572	chr3	97413117	97414693	+	0	NA	Intergenic	Lx8|LINE|L1	-2726	NM_146275	258272	Mm.377406	NM_146275	ENSMUSG00000051392	Olfr1402	MOR217-1	olfactory receptor 1402	protein-coding	6.936	11.034	3.875	9.918	2.537	1.825	7.015	5.118	4.953	8.741	4.476	2.614	6.838	7.346	7.523	7.603	5.356	7.865	3.266	1.020	1.781	4.236	2.136	3.623	11.399
14867	chr9	14465787	14468186	+	0	NA	intron (NM_173433, intron 1 of 1)	intron (NM_173433, intron 1 of 1)	33496	NM_173433	244694	Mm.240457	NM_173433	ENSMUSG00000053914	Kdm4d	4932416A15|Jmjd2d	lysine (K)-specific demethylase 4D	protein-coding	0.591	0.648	0.380	0.482	0.196		0.255	0.573	0.325	0.432	7.883	3.004	0.162	0.381	0.325	0.691	0.427	0.719	0.490	0.341	0.204	0.504	0.319	0.198	0.677
7282	chr18	60681552	60687347	+	0	NA	Intergenic	Intergenic	21039	NR_045401	328963	Mm.417203	NR_045401		G630071F17Rik	G630071F17	RIKEN cDNA G630071F17 gene	ncRNA	9.899	4.172	2.106	7.186	3.938	1.732	6.948	7.619	6.225	7.967	7.534	4.394	10.244	10.016	7.910	8.636	7.325	7.299	nan	2.161	1.290	nan	1.682	1.441	10.070
14635	chr8	118287764	118290818	+	0	NA	intron (NM_019707, intron 1 of 13)	intron (NM_019707, intron 1 of 13)	5680	NM_019707	12554	Mm.334841	NM_019707	ENSMUSG00000031841	Cdh13	4932416G01Rik|Cdht|Tcad	cadherin 13	protein-coding	0.414	0.617	0.215	0.572	0.400	0.194	1.734	3.022	1.002	1.070	10.203	2.854	1.870	1.120	2.508	nan	0.790	1.070	1.358	0.866	0.663	2.357	0.961	0.986	0.591
3404	chr12	71757169	71759166	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	-72901	NM_026102	208846	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	4.017	0.640	0.654	1.923	2.060	0.700	3.055	1.471	3.130	3.179	5.904	1.265	5.686	5.766	4.214	4.984	3.862	4.245	0.880	0.471	0.446	0.603	0.487	0.380	4.992
11896	chr5	140983696	140987626	+	0	NA	intron (NM_175362, intron 1 of 24)	RLTR51A_Mm|LTR|ERVK?	14935	NM_175362	108723	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	3.488	4.790	2.936	3.242	3.317	2.769	1.013	1.909	1.974	2.273	3.033	1.044	1.153	2.356	1.733	1.940	1.559	2.259	3.271	5.484	4.256	4.554	5.556	4.404	2.380
5132	chr15	38005433	38007918	+	0	NA	intron (NM_001112721, intron 26 of 58)	intron (NM_001112721, intron 26 of 58)	-45620	NM_199476	382985	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	7.964	3.674	2.703	4.542	6.255	3.561	6.959	10.327	3.706	5.568	3.835	3.377	6.091	6.343	5.623	5.988	7.452	4.593	3.936	4.222	2.362	nan	4.166	3.906	6.121
10360	chr4	107736565	107738278	+	0	NA	Intergenic	Intergenic	-53259	NM_019872	56296	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	4.027	2.155	1.771	2.327	5.343	3.274	1.674	4.125	2.895	3.955	0.667	1.158	2.147	3.537	3.437	4.233	4.636	nan	1.082	1.825	1.061	0.697	0.986	1.094	3.816
9448	chr3	88402599	88405968	+	0	NA	intron (NM_025928, intron 1 of 4)	(CAGA)n|Simple_repeat|Simple_repeat	6114	NM_001310605	67037	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	0.759	1.290	1.369	1.822	3.714	2.927	1.828	1.192	1.614	1.221	0.985	1.007	1.376	1.944	0.953	nan	1.749	1.644	nan	1.254	1.262	0.471	0.668	1.384	0.974
11923	chr5	144305357	144306895	+	0	NA	intron (NM_025833, intron 3 of 13)	B2_Mm2|SINE|B2	29065	NR_040432	100504231	Mm.441035	NR_040432	ENSMUSG00000086894	Gm15708	OTTMUSG00000025583	predicted gene 15708	ncRNA	2.303	0.689	0.454	2.362	4.000	2.071	1.204	2.750	2.996	3.357	3.546	2.006	1.543	3.805	1.479	nan	0.870	2.523	0.703	0.807	0.368	0.306	0.414	0.281	nan
1894	chr11	3601403	3605136	+	0	NA	Intergenic	B3|SINE|B2	44267	NR_110490	544752	Mm.390314	NR_002321	ENSMUSG00000056579	Tug1	AI316828	taurine upregulated gene 1	ncRNA	nan	0.556	0.316	0.896	1.577	0.685	1.433	1.449	1.899	2.689	2.108	0.671	2.040	4.453	2.144	2.174	1.485	2.022	1.080	nan	0.373	1.582	0.729	0.650	2.286
6260	chr16	95936473	95939824	+	0	NA	Intergenic	RMER6C|LTR|ERVK	-9071	NR_040484	69776	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	4.583	1.422	0.488	3.713	1.983	0.957	4.203	5.623	2.582	3.381	2.257	1.250	5.859	6.141	5.424	7.546	3.330	7.285	nan	0.603	0.293	0.946	0.598	0.254	7.335
535	chr1	123240488	123241579	+	0	NA	Intergenic	RLTR20A2|LTR|ERVK	804526	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	3.431	nan	0.034	2.482	0.729	0.341	3.096	3.452	2.069	2.051	1.241	2.180	5.531	3.640	3.584	3.700	1.985	3.639	nan	0.294	0.295	0.779	0.388	0.186	1.778
3138	chr11	121403014	121408079	+	0	NA	Intergenic	Intergenic	-15827	NM_181420	238024	Mm.117394	NM_181420	ENSMUSG00000039253	Fn3krp	FN3K-RP	fructosamine 3 kinase related protein	protein-coding	5.049	nan	1.582	4.489	3.216	1.839	nan	6.130	3.968	5.008	7.685	3.861	6.217	8.204	6.966	7.012	5.417	5.536	4.486	nan	1.714	5.319	2.176	1.573	6.377
14277	chr8	71646753	71649840	+	0	NA	intron (NM_001029873, intron 24 of 41)	PB1D10|SINE|Alu	-17190	NR_106035	102466799		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	3.236	0.626	0.583	2.036	2.098	1.528	2.434	2.369	1.993	2.678	0.519	0.561	4.533	4.997	3.583	6.270	7.260	1.960	nan	1.611	1.275	1.558	1.678	0.621	3.670
683	chr1	137662467	137664156	+	0	NA	Intergenic	Intergenic	-303144	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	15.798	4.361	1.353	8.384	2.124	1.162	3.181	5.343	5.711	14.843	13.138	5.502	3.599	4.294	4.880	14.276	4.596	10.610	5.322	1.590	2.230	6.664	3.152	4.224	21.348
15599	chr9	120802207	120806671	+	0	NA	Intergenic	Intergenic	110811	NR_040742	76402	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	2.586	0.666	0.319	1.421	0.662	0.193	5.751	5.990	2.053	2.557	0.753	1.263	5.529	6.163	5.339	6.379	3.078	3.151	0.515	0.406	0.216	0.632	nan	0.495	2.822
2260	chr11	59652020	59654043	+	0	NA	Intergenic	Lx9|LINE|L1	-9464	NM_201245	26936	Mm.2402	NM_012027	ENSMUSG00000005417	Mprip	9530046C02|AA536749|AI647711|C76423|RIP3|Rhoip3|mKIAA0864|p116Rip	myosin phosphatase Rho interacting protein	protein-coding	7.550	9.310	2.514	9.064	3.358	1.221	5.319	5.683	4.979	7.699	4.358	3.172	5.890	7.258	8.489	9.450	4.752	7.864	4.309	1.842	2.245	6.469	1.534	2.072	9.023
15013	chr9	44186374	44188986	+	0	NA	intron (NM_007619, intron 2 of 15)	intron (NM_007619, intron 2 of 15)	46366	NM_007619	12402	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	5.530	10.669	5.125	6.963	3.476	3.026	5.049	5.314	4.394	5.359	3.505	3.121	5.096	6.346	nan	8.624	3.665	5.710	4.680	2.480	3.022	4.679	3.938	3.938	8.968
12377	chr6	85910124	85912719	+	0	NA	intron (NM_023160, intron 1 of 1)	intron (NM_023160, intron 1 of 1)	4256	NM_023160	66116	Mm.13036	NM_023160	ENSMUSG00000057103	Nat8f1	1110002I11Rik|AI266962|Cml1	N-acetyltransferase 8 (GCN5-related) family member 1	protein-coding	8.108	10.587	3.600	11.369	5.044	3.752	9.915	10.227	5.483	9.949	7.435	4.386	9.080	11.184	10.898	12.274	8.721	8.451	nan	2.830	2.403	6.134	4.313	3.883	12.572
1215	chr10	39274428	39281226	+	0	NA	Intergenic	MYSERV-int|LTR|ERVK	-91972	NM_001122892	14360	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	2.855	1.092	0.513	3.125	1.153	0.543	2.096	2.082	1.232	1.218	0.938	0.579	1.400	2.168	1.632	1.856	2.595	2.601	4.000	2.670	1.799	6.896	2.711	1.719	2.064
10166	chr4	62698066	62700366	+	0	NA	intron (NM_001310706, intron 3 of 6)	intron (NM_001310706, intron 3 of 6)	25242	NM_001310706	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	3.455	nan	0.277	0.754	1.009	0.216	3.655	4.980	0.629	1.067	0.939	0.312	3.184	4.418	4.398	4.155	3.166	2.318	1.846	1.156	0.693	2.388	0.788	0.498	5.729
3886	chr13	23842917	23844093	+	0	NA	intron (NM_134069, intron 2 of 12)	intron (NM_134069, intron 2 of 12)	4071	NM_134069	105355	Mm.27038	NM_134069	ENSMUSG00000036083	Slc17a3	AW261723|Npt4	solute carrier family 17 (sodium phosphate), member 3	protein-coding	3.007	7.190	2.463	4.261	1.696	0.574	1.727	3.234	2.631	3.343	2.860	2.226	2.431	4.440	3.950	3.712	3.108	5.188	3.492	1.812	0.878	2.472	1.540	0.707	3.386
6176	chr16	87452449	87457267	+	0	NA	promoter-TSS (NM_024258)	promoter-TSS (NM_024258)	-127	NM_024258	74112	Mm.152941	NM_024258	ENSMUSG00000025616	Usp16	1200004E02Rik|2810483I07Rik|6330514E22Rik|UBPM	ubiquitin specific peptidase 16	protein-coding	6.919	nan	1.592	3.857	4.294	2.752	2.089	4.059	2.309	3.850	2.410	1.665	4.280	4.899	4.289	4.792	2.907	6.635	2.063	1.886	1.697	nan	1.841	1.674	9.170
5937	chr16	24486907	24493335	+	0	NA	intron (NM_001145952, intron 2 of 11)	intron (NM_001145952, intron 2 of 11)	-39193	NR_038091	624582	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	6.745	2.287	1.567	4.393	6.307	3.560	4.750	6.020	4.476	5.226	3.278	3.185	4.737	6.993	4.430	5.471	3.507	6.944	2.936	3.270	2.084	3.356	nan	2.749	6.129
5033	chr15	8632644	8637656	+	0	NA	3' UTR (NM_148938, exon 10 of 10)	3' UTR (NM_148938, exon 10 of 10)	75657	NM_148938	20512	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	2.289	1.501	1.170	2.982	3.569	2.673	4.119	3.022	1.921	2.547	5.373	0.444	5.854	4.755	5.206	5.443	6.189	2.942	0.464	0.410	0.381	0.510	0.180	0.135	3.297
765	chr1	156927287	156932736	+	0	NA	intron (NR_027640, intron 1 of 19)	intron (NR_027640, intron 1 of 19)	9376	NM_001159966	78255	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	8.013	3.026	1.408	5.658	4.312	2.299	5.956	6.315	3.645	5.834	5.437	3.132	6.328	6.975	5.342	9.033	5.851	6.133	nan	2.493	1.779	2.906	nan	2.991	7.056
312	chr1	74772476	74774730	+	0	NA	intron (NM_009526, intron 1 of 3)	intron (NM_009526, intron 1 of 3)	1711	NM_009526	22420	Mm.268282	NM_009526	ENSMUSG00000033227	Wnt6	AA409270|Wnt-6	wingless-type MMTV integration site family, member 6	protein-coding	0.723	1.873	1.570	0.688	0.793	0.435	0.869	1.210	1.034	0.628	6.874	3.871	0.812	0.745	0.632	nan	1.168	nan	nan	nan	0.217	0.772	nan	0.897	nan
2521	chr11	79099813	79102639	+	0	NA	intron (NM_013571, intron 1 of 17)	intron (NM_013571, intron 1 of 17)	45128	NM_013571	16706	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb	kinase suppressor of ras 1	protein-coding	3.980	2.199	0.992	3.832	3.001	2.667	2.336	2.725	2.133	2.492	1.815	0.996	1.718	2.302	nan	4.523	2.879	3.339	1.574	2.645	nan	5.676	1.128	0.863	4.646
13492	chr7	107067974	107069961	+	0	NA	Intergenic	Intergenic	-4863	NM_147033	259035	Mm.377800	NM_147033	ENSMUSG00000049674	Olfr714	MOR263-2|P4	olfactory receptor 714	protein-coding	3.369	0.547	0.593	2.023	1.076	0.547	5.097	2.693	2.121	3.225	0.602	0.882	5.966	4.490	2.842	3.845	3.822	3.798	nan	0.780	0.530	1.481	0.863	1.153	5.000
7804	chr19	45056275	45066858	+	0	NA	Intergenic	Intergenic	13990	NM_001178013	94280	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	1.676	0.816	0.637	nan	0.595	0.395	4.193	8.335	0.985	1.020	0.457	0.551	3.002	2.137	3.081	2.944	4.536	nan	0.414	0.576	0.521	0.850	0.715	0.683	2.890
7167	chr18	37977672	37980424	+	0	NA	intron (NM_001205336, intron 23 of 32)	intron (NM_001205336, intron 23 of 32)	-4431	NR_105947	102466779		NR_105947	ENSMUSG00000098608	Mir6981	Gm27609|mmu-mir-6981	microRNA 6981	ncRNA	1.828	1.105	0.525	1.803	1.784	0.659	3.679	2.954	1.432	2.114	0.858	0.367	2.887	3.572	3.126	4.235	2.150	2.505	0.932	0.531	0.713	1.310	0.755	0.587	1.930
1002	chr1	186822641	186823762	+	0	NA	Intergenic	Intergenic	-73843	NM_026041	67223	Mm.289841	NM_026041	ENSMUSG00000001305	Rrp15	2810430M08Rik|5430437H21Rik	ribosomal RNA processing 15 homolog (S. cerevisiae)	protein-coding	1.791	1.492	0.010	2.456	1.276	1.052	1.009	1.131	1.128	4.372	3.685	1.115	0.601	1.165	0.857	2.097	0.302	1.745	5.582	1.803	3.502	8.436	3.912	7.651	2.665
2435	chr11	72840318	72841425	+	0	NA	intron (NM_001045536, intron 9 of 54)	intron (NM_001045536, intron 9 of 54)	44645	NM_001045536	195018	Mm.272030	NM_001045536	ENSMUSG00000055670	Zzef1	8430405D05Rik|BC051585|C130099L13Rik|C85424|NSPA|mKIAA0399	zinc finger, ZZ-type with EF hand domain 1	protein-coding	5.327	0.991	0.215	2.733	1.773	0.628	7.586	5.987	2.128	2.989	2.189	1.275	3.810	4.684	5.321	5.878	3.983	4.910	0.437	1.040	0.457	0.865	nan	0.466	6.201
6187	chr16	90385533	90391817	+	0	NA	intron (NM_015755, intron 1 of 10)	intron (NM_015755, intron 1 of 10)	2278	NM_015755	26559	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	6.597	nan	0.282	2.019	0.692	0.531	5.328	9.831	0.991	2.692	1.737	1.266	4.958	3.860	6.797	7.234	5.254	4.605	2.570	0.812	1.315	nan	1.625	1.981	12.060
4837	chr14	73723881	73726077	+	0	NA	Intergenic	Intergenic	172193	NM_011506	20916	Mm.38951	NM_011506	ENSMUSG00000022110	Sucla2	4930547K18Rik|A-SCS	succinate-Coenzyme A ligase, ADP-forming, beta subunit	protein-coding	5.920	8.645	3.178	8.660	4.417	3.417	3.038	5.835	4.199	11.477	4.355	4.081	3.637	5.932	5.433	7.912	4.192	6.181	6.223	2.106	4.917	5.329	4.841	6.883	10.874
370	chr1	84689631	84692330	+	0	NA	intron (NM_152915, intron 1 of 12)	intron (NM_152915, intron 1 of 12)	-4859	NR_039588	100628595		NR_039588	ENSMUSG00000093254	Mir5126	mir-5126|mmu-mir-5126|mu-mir-5126	microRNA 5126	ncRNA	0.339	0.451	0.212	0.315	0.142	0.047	0.344	0.197	0.238	0.206	0.210	0.188	0.102	0.203	0.126	0.470	0.364	0.209	7.080	3.318	3.720	7.022	5.588	5.098	0.376
7508	chr19	6914436	6916422	+	0	NA	intron (NM_007953, intron 2 of 6)	intron (NM_007953, intron 2 of 6)	-1143	NR_105956	102466213		NR_105956	ENSMUSG00000098413	Mir6990	Gm27726|mmu-mir-6990	microRNA 6990	ncRNA	7.633	9.772	2.625	8.510	3.507	2.310	11.396	10.211	5.563	9.598	7.767	5.864	6.929	10.674	9.181	10.975	8.919	8.886	1.974	1.991	2.215	5.210	3.038	2.972	17.031
6391	chr17	24386501	24388312	+	0	NA	intron (NM_013855, intron 17 of 32)	intron (NM_013855, intron 17 of 32)	27107	NR_033554	654822	Mm.489806	NM_001039561	ENSMUSG00000073437	D330041H03Rik	-	RIKEN cDNA D330041H03 gene	ncRNA	2.786	6.952	3.518	2.044	1.412	0.868	3.317	3.091	1.919	1.904	3.098	1.948	2.551	2.731	3.289	nan	2.807	2.543	4.870	2.612	2.612	4.055	4.574	4.921	5.447
15226	chr9	66422547	66424604	+	0	NA	intron (NM_145617, intron 25 of 77)	intron (NM_145617, intron 25 of 77)	73125	NM_145617	235439	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	3.503	1.049	0.337	1.892	1.783	1.184	2.601	5.967	2.735	2.950	1.247	1.480	3.307	3.462	4.113	4.378	2.897	3.850	3.352	2.101	1.246	1.678	2.379	1.807	2.633
11775	chr5	134806300	134810084	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-60869	NM_007925	13717	Mm.275320	NM_007925	ENSMUSG00000029675	Eln	AI385707|AI480567|E030024M20Rik	elastin	protein-coding	1.133	5.022	4.678	1.843	1.737	1.388	1.025	1.087	0.903	1.091	2.429	2.027	0.637	1.054	1.282	0.971	0.623	1.114	2.806	5.345	6.783	4.706	nan	1.679	0.578
10873	chr4	147460566	147463101	+	0	NA	intron (NM_001039209, intron 1 of 2)	intron (NM_001039209, intron 1 of 2)	-91444	NM_001014397	433804	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154|OTTMUSG00000010673	zinc finger protein 985	protein-coding	5.698	4.219	1.523	6.372	3.223	1.909	3.235	3.603	2.865	4.216	1.982	1.617	3.123	4.512	4.497	4.785	2.570	4.479	6.345	2.305	2.318	7.193	8.169	8.351	8.685
15401	chr9	96632493	96643175	+	0	NA	Intergenic	B3|SINE|B2	-6331	NM_053268	114713	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	1.421	11.544	6.910	1.780	1.019	0.369	1.426	1.187	1.086	1.208	0.919	0.595	1.065	1.598	1.595	1.649	0.977	1.746	0.990	0.651	0.482	0.688	0.633	0.638	1.542
9784	chr3	123133782	123137198	+	0	NA	intron (NM_080451, intron 1 of 4)	Lx7|LINE|L1	-100503	NM_021503	59006	Mm.141157	NM_021503	ENSMUSG00000028116	Myoz2	1110012I24Rik|Fatz-2|Myozl2	myozenin 2	protein-coding	0.405	0.714	0.337	0.315	0.120	0.074	0.365	nan	0.622	0.258	7.535	2.491	0.177	0.260	0.452	nan	nan	nan	0.406	0.381	0.295	0.364	0.451	0.111	0.412
3398	chr12	71623696	71626694	+	0	NA	Intergenic	Intergenic	84588	NR_045941	73815	Mm.416916	NR_045941		4930404H11Rik	-	RIKEN cDNA 4930404H11 gene	ncRNA	4.450	1.340	0.813	2.257	1.433	0.636	1.388	3.381	2.564	1.868	6.336	2.364	2.269	1.622	2.511	2.415	5.472	2.588	0.567	1.053	0.364	0.484	0.699	0.511	4.449
567	chr1	129626323	129633304	+	0	NA	intron (NM_172485, intron 5 of 27)	Lx8|LINE|L1	356509	NM_172485	210417	Mm.380518	NM_172485	ENSMUSG00000042581	Thsd7b	1700074E13Rik|B930082A18|D130067I03Rik	thrombospondin, type I, domain containing 7B	protein-coding	9.761	nan	0.553	1.435	1.421	0.745	3.505	7.309	1.999	2.983	0.471	0.569	5.798	3.673	3.746	9.947	6.246	4.203	nan	0.642	0.492	0.657	0.654	0.518	2.628
13910	chr7	150190606	150196017	+	0	NA	Intergenic	Intergenic	4878476	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	7.146	10.797	3.479	5.020	3.090	1.997	5.474	5.549	3.748	4.445	3.835	1.977	4.391	5.156	5.098	6.979	3.920	6.092	2.031	2.373	1.919	2.209	nan	1.905	9.223
6120	chr16	52328201	52330610	+	0	NA	intron (NM_009655, intron 1 of 15)	intron (NM_009655, intron 1 of 15)	123676	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	5.114	1.354	0.381	3.139	5.680	2.439	6.091	6.528	5.072	4.464	3.597	4.037	7.865	5.594	6.034	6.896	4.419	6.692	0.911	1.042	0.452	1.020	0.790	0.685	3.930
4925	chr14	102182669	102190102	+	0	NA	Intergenic	Intergenic	345762	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	3.664	nan	0.701	3.434	3.877	2.617	3.481	4.659	5.622	4.964	5.504	3.527	4.568	5.577	4.374	4.741	2.044	6.911	1.233	0.579	0.670	0.890	1.182	1.256	nan
14088	chr8	26120280	26127289	+	0	NA	intron (NM_029965, intron 2 of 7)	intron (NM_029965, intron 2 of 7)	4404	NM_029965	77733	Mm.291906	NM_029965	ENSMUSG00000013878	Rnf170	6720407G21Rik|AI481227	ring finger protein 170	protein-coding	14.199	7.263	6.316	6.743	10.594	7.622	8.119	10.447	7.041	7.729	5.539	5.797	8.135	10.767	8.180	8.960	9.154	9.829	1.673	2.442	2.807	nan	1.927	1.749	9.478
8170	chr2	34681011	34684346	+	0	NA	intron (NM_025709, intron 24 of 26)	intron (NM_025709, intron 24 of 26)	72554	NM_025709	66691	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	5.493	4.241	2.117	6.094	3.906	2.261	5.415	10.630	3.573	5.252	2.631	2.366	5.190	7.447	6.481	8.978	8.111	6.228	2.425	1.755	1.829	3.301	2.160	2.314	7.374
4897	chr14	79902382	79905371	+	0	NA	Intergenic	Intergenic	-34700	NR_033535	100038734	Mm.387484	NR_033535		Gm10845	ENSMUSG00000075496	predicted gene 10845	ncRNA	7.414	2.598	1.182	4.765	5.419	2.541	5.384	10.114	6.461	6.771	6.395	4.826	6.656	9.550	7.874	7.847	4.467	7.096	1.272	1.439	0.533	1.328	1.290	0.984	7.014
9883	chr3	152057218	152060536	+	0	NA	Intergenic	Intergenic	107023	NM_016867	54120	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	7.677	8.960	2.882	7.476	6.061	4.126	9.114	6.356	5.082	13.890	6.841	3.276	8.262	8.850	6.571	8.510	5.658	7.641	5.218	2.845	3.651	5.111	3.894	5.211	12.564
9601	chr3	100911483	100916886	+	0	NA	Intergenic	L1_Rod|LINE|L1	-8309	NM_001165952	229644	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding	4.707	1.998	0.772	6.030	2.894	2.300	6.328	4.421	4.469	7.623	nan	3.457	5.453	5.978	5.409	6.786	3.820	6.138	1.866	1.497	1.227	2.445	1.318	1.634	9.278
10474	chr4	120674237	120680248	+	0	NA	Intergenic	Intergenic	10679	NM_019563	56222	Mm.272646	NM_019563	ENSMUSG00000070803	Cited4	MRG-2|Mrg2	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	protein-coding	3.093	10.099	5.677	2.452	1.585	0.818	0.872	1.175	2.065	2.033	0.901	0.931	0.788	1.345	1.564	nan	1.198	2.022	2.134	2.084	1.452	1.880	1.866	1.128	1.811
2079	chr11	33760494	33761763	+	0	NA	intron (NM_001190885, intron 1 of 8)	intron (NM_001190885, intron 1 of 8)	82457	NM_027398	70357	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	3.574	1.160	1.166	1.641	2.603	1.912	1.964	7.835	3.438	4.442	2.831	4.190	2.464	4.224	1.886	1.585	1.697	1.826	1.757	1.660	1.123	1.035	0.447	0.741	1.278
2974	chr11	115047203	115049465	+	0	NA	promoter-TSS (NM_199201)	promoter-TSS (NM_199201)	-39	NM_199201	382551	Mm.424732	NM_199201	ENSMUSG00000069607	Cd300ld3	AY457049|Cd300lh|Clm3|Lmir7|clm-3	CD300 molecule like family member D3	protein-coding	7.751	6.814	2.746	5.618	5.188	3.474	5.333	6.598	3.226	6.197	4.587	3.038	4.641	8.539	5.775	6.854	5.197	6.018	2.824	nan	2.677	2.565	4.663	2.742	6.491
9155	chr3	19304644	19308994	+	0	NA	intron (NM_001122759, intron 1 of 12)	ID_B1|SINE|B4	4503	NM_001122759	18583	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	3.926	nan	0.796	1.391	1.518	0.670	3.998	2.504	4.252	3.392	8.985	2.174	4.398	4.342	2.856	2.775	3.694	3.167	0.914	0.916	0.315	0.807	0.875	0.460	2.763
14792	chr8	128142635	128144182	+	0	NA	Intergenic	L1M2|LINE|L1	134817	NR_105822	102465212		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	7.939	nan	0.972	3.960	2.334	1.534	5.880	9.156	3.810	5.664	4.220	3.165	5.119	7.728	6.678	7.981	4.136	nan	nan	1.839	1.086	nan	2.650	2.136	9.154
14149	chr8	36015799	36018117	+	0	NA	Intergenic	Intergenic	-77870	NM_172911	244418	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	4.062	1.182	0.186	2.306	2.776	1.110	3.610	6.477	2.500	2.657	2.967	1.958	5.286	4.644	6.609	7.433	4.380	6.216	4.445	1.273	0.572	3.339	2.677	1.608	6.184
13267	chr7	73269148	73272015	+	0	NA	Intergenic	L1MC5a|LINE|L1	-39799	NR_105062	100505025	Mm.445959	NR_105062	ENSMUSG00000108530	LOC100505025	-	uncharacterized LOC100505025	ncRNA	3.204	7.520	3.363	3.925	1.126	0.471	1.533	1.355	3.410	4.182	1.341	1.106	1.528	3.103	2.698	4.034	2.095	3.292	1.102	0.874	0.312	1.118	0.551	0.209	4.393
5511	chr15	83954728	83956086	+	0	NA	intron (NM_029946, intron 10 of 31)	intron (NM_029946, intron 10 of 31)	-19312	NM_001161628	77627	Mm.196288	NM_029946	ENSMUSG00000022441	Efcab6	4931407K02Rik|4932408N08Rik|bM150J22.2|mKIAA1672	EF-hand calcium binding domain 6	protein-coding	4.325	0.657	0.859	nan	0.628	0.621	1.493	7.109	nan	0.336	0.427	0.225	1.187	3.225	2.084	nan	nan	nan	1.191	1.200	1.972	nan	0.911	1.275	2.608
800	chr1	163177266	163185326	+	0	NA	Intergenic	Intergenic	-95626	NM_030071	78258	Mm.78368	NM_030071	ENSMUSG00000071890	Mroh9	4921528O07Rik|Armc11	maestro heat-like repeat family member 9	protein-coding	10.142	3.757	1.750	7.358	4.709	3.210	5.829	6.995	nan	7.828	5.458	3.846	8.059	9.487	5.923	10.223	7.958	7.578	1.929	1.430	1.276	nan	nan	1.204	nan
15417	chr9	99581320	99591111	+	0	NA	Intergenic	B3|SINE|B2	10416	NM_031403	83703	Mm.31324	NM_031403	ENSMUSG00000032469	Dbr1	AW018415	debranching RNA lariats 1	protein-coding	6.504	0.351	0.375	3.176	3.817	2.578	4.235	1.704	5.329	7.368	0.624	0.838	5.957	8.298	4.589	6.081	5.357	6.493	0.495	0.818	0.571	0.284	0.681	0.751	8.870
13462	chr7	105325398	105328012	+	0	NA	Intergenic	Intergenic	3573	NM_020290	56860	Mm.377127	NM_020290	ENSMUSG00000050266	Olfr690	MOR31-2|Ors18	olfactory receptor 690	protein-coding	6.592	6.224	1.694	6.497	3.923	1.911	9.295	12.386	4.347	6.529	7.329	3.494	8.878	9.925	9.573	9.098	5.804	7.661	nan	1.530	2.111	4.205	4.754	3.424	12.696
9338	chr3	59007499	59011264	+	0	NA	intron (NM_177855, intron 1 of 43)	intron (NM_177855, intron 1 of 43)	2403	NM_177855	329650	Mm.240059	NM_177855	ENSMUSG00000056476	Med12l	A130035F20|A630079M02|AU044581|TRALPUSH	mediator complex subunit 12-like	protein-coding	5.069	2.301	1.197	3.896	4.331	2.348	6.038	2.685	3.515	3.686	7.375	2.838	5.689	7.160	5.636	2.692	0.996	6.721	0.511	0.524	0.586	0.689	0.491	0.323	3.604
8732	chr2	143728428	143730725	+	0	NA	intron (NM_008792, intron 5 of 11)	L1Md_T|LINE|L1	59610	NR_040625	378775	Mm.441313	NR_040625	ENSMUSG00000087115	Pcsk2os2	9430032N09Rik|Gm12360|OTTMUSG00000006467	proprotein convertase subtilisin/kexin type 2, opposite strand 2	ncRNA	7.982	1.312	1.295	5.439	6.316	4.246	8.264	10.191	7.695	8.257	7.345	5.664	8.544	8.417	8.087	8.670	8.325	8.342	4.060	2.654	1.457	3.809	1.349	1.209	7.863
1365	chr10	66534457	66536332	+	0	NA	Intergenic	Intergenic	384990	NR_138560	68488	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	4.075	4.277	1.604	2.936	2.613	1.690	3.148	2.033	2.125	2.377	1.549	0.727	2.785	5.041	2.450	3.610	3.069	2.722	0.791	1.705	0.810	0.700	1.161	0.543	2.990
13133	chr7	35891969	35893820	+	0	NA	Intergenic	Intergenic	-89905	NM_177739	668501	Mm.286296	NM_177739	ENSMUSG00000044452	Zfp507	1810022O10Rik|A230056M16Rik|AL024009|AU021817|BB105092|Gm480|Znf507|mKIAA1084	zinc finger protein 507	protein-coding	7.071	0.623	0.671	4.284	3.719	2.534	6.587	12.321	5.672	5.472	4.489	2.828	10.734	8.159	6.691	8.075	6.676	6.490	2.644	1.513	1.125	1.056	1.819	1.264	6.822
12971	chr7	19966884	19968441	+	0	NA	intron (NM_027839, intron 1 of 11)	B4A|SINE|B4	2250	NM_027839	71601	Mm.98097	NM_027839	ENSMUSG00000070777	Ceacam20	9130012D09Rik	carcinoembryonic antigen-related cell adhesion molecule 20	protein-coding	5.433	4.997	2.593	4.844	4.587	4.539	5.722	6.516	3.365	5.334	3.309	2.737	4.154	4.817	5.716	5.518	5.139	4.778	3.564	2.923	4.528	2.729	3.952	5.019	7.769
10491	chr4	123102412	123105679	+	0	NA	Intergenic	Intergenic	-1116	NM_007559	12164	Mm.439764	NM_007559	ENSMUSG00000002384	Bmp8b	Op3	bone morphogenetic protein 8b	protein-coding	6.133	2.442	1.610	5.807	5.868	4.000	1.953	3.583	4.899	3.889	3.240	1.850	3.301	5.721	3.089	4.205	3.473	5.533	1.092	1.409	1.379	1.269	0.971	1.024	4.883
3613	chr12	88724706	88754852	+	0	NA	Intergenic	Intergenic	-54725	NM_001198587	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	9.655	1.355	0.851	4.781	5.929	5.239	6.532	6.777	5.359	6.014	2.319	1.942	7.564	8.057	6.561	nan	9.265	6.881	1.030	0.960	1.096	0.998	0.949	1.170	nan
10726	chr4	136057641	136059360	+	0	NA	Intergenic	B2_Mm1a|SINE|B2	-5129	NM_025919	67025	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	2.488	0.299	0.035	2.210	4.374	3.678	2.392	3.600	nan	1.402	0.855	1.299	1.735	4.102	1.787	1.420	1.390	nan	0.686	0.518	0.538	0.510	nan	0.870	1.662
15482	chr9	107477475	107479827	+	0	NA	intron (NM_001174047, intron 3 of 38)	B2_Mm2|SINE|B2	41915	NR_039580	100628590		NR_039580	ENSMUSG00000092761	Mir5120	mmu-mir-5120|mu-mir-5120	microRNA 5120	ncRNA	2.133	1.652	0.643	3.799	1.578	0.754	2.555	5.586	3.245	2.715	8.310	3.211	2.360	3.288	3.581	3.810	1.473	3.868	1.338	0.990	0.154	2.449	1.009	0.341	4.721
15346	chr9	79629756	79646805	+	0	NA	intron (NM_001290308, intron 43 of 65)	intron (NM_001290308, intron 43 of 65)	80442	NM_001290308	12816	Mm.3819	NM_007730	ENSMUSG00000032332	Col12a1	-	collagen, type XII, alpha 1	protein-coding	7.327	2.459	1.206	3.697	3.840	2.591	3.761	4.451	6.369	7.846	1.385	1.218	7.700	6.203	6.093	6.625	6.142	8.378	1.222	nan	0.804	0.965	1.104	0.783	nan
12418	chr6	88073848	88076891	+	0	NA	Intergenic	Intergenic	-9104	NM_133933	103963	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	1.750	0.526	0.242	2.387	1.003	0.689	3.153	3.306	1.617	1.744	0.523	0.140	4.218	7.703	4.376	5.336	2.607	2.597	nan	0.526	0.242	0.660	0.591	0.343	3.141
14597	chr8	112273201	112275131	+	0	NA	Intergenic	Intergenic	262807	NM_020584	57321	Mm.213064	NM_020584	ENSMUSG00000033430	Terf2ip	Rap1	telomeric repeat binding factor 2, interacting protein	protein-coding	6.515	3.208	2.406	1.995	3.757	3.188	4.883	5.805	2.141	1.947	4.706	2.478	4.293	5.541	4.592	4.785	3.772	3.643	0.747	1.176	0.960	nan	0.448	0.580	2.897
11006	chr5	3500649	3505856	+	0	NA	intron (NM_009873, intron 5 of 7)	intron (NM_009873, intron 5 of 7)	-40581	NM_001042501	68152	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	5.368	8.692	4.572	3.911	2.052	1.111	2.454	3.130	2.937	2.662	2.733	2.137	1.468	3.493	3.076	2.751	2.199	3.366	0.906	1.272	0.810	1.197	0.404	0.139	2.476
7083	chr18	24687438	24689045	+	0	NA	intron (NM_026779, intron 10 of 14)	intron (NM_026779, intron 10 of 14)	-20382	NM_001289654	225288	Mm.329322	NM_175276	ENSMUSG00000034295	Fhod3	A930009H06Rik|FHOS2|mKIAA1695	formin homology 2 domain containing 3	protein-coding	8.741	8.718	3.371	7.303	6.613	4.704	5.936	8.256	4.023	6.573	6.087	2.791	4.815	7.055	5.401	6.882	5.405	6.393	nan	3.287	4.301	6.171	5.291	5.869	13.429
7128	chr18	35350044	35355619	+	0	NA	intron (NM_030749, intron 3 of 9)	intron (NM_030749, intron 3 of 9)	-137807	NM_178005	107065	Mm.39900	NM_178005	ENSMUSG00000071862	Lrrtm2	AI851755|BB129880|C630011A14Rik|mKIAA0416	leucine rich repeat transmembrane neuronal 2	protein-coding	6.110	0.540	0.487	1.691	2.243	1.048	5.730	4.745	4.482	4.070	3.039	1.800	7.567	4.722	4.082	4.476	5.439	4.907	0.986	0.647	0.437	0.539	0.770	0.324	4.580
8727	chr2	141112495	141114832	+	0	NA	intron (NM_001013802, intron 5 of 18)	intron (NM_001013802, intron 5 of 18)	-442187	NM_178382	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	5.635	1.036	0.286	2.322	2.134	1.372	5.053	6.667	4.425	3.656	2.631	4.039	6.080	5.191	4.863	6.158	4.797	4.067	0.998	1.342	0.879	0.494	0.800	0.735	3.798
1568	chr10	86577748	86585243	+	0	NA	Intergenic	MT2C_Mm|LTR|ERVL	-82599	NM_013722	27204	Mm.394931	NM_013722	ENSMUSG00000059602	Syn3	-	synapsin III	protein-coding	nan	0.685	0.330	0.412	0.129	0.049	0.242	0.173	0.242	0.207	0.224	0.122	0.059	nan	0.195	0.404	0.457	nan	5.445	2.415	1.498	nan	nan	2.771	0.396
13919	chr7	150495628	150497247	+	0	NA	Intergenic	Intergenic	5181602	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	2.369	nan	0.415	1.586	1.196	0.808	2.512	3.625	2.172	1.932	0.489	0.419	2.031	3.488	2.445	3.113	3.083	2.511	0.634	0.579	0.227	0.994	nan	0.567	2.733
15668	chrX	7799959	7801430	+	0	NA	intron (NM_207670, intron 8 of 24)	intron (NM_207670, intron 8 of 24)	10701	NM_207670	54645	Mm.194811	NM_207670	ENSMUSG00000031153	Gripap1	AI854681|DXImx47e|GRASP-1|Sfc10|mKIAA1167	GRIP1 associated protein 1	protein-coding	1.998	0.823	0.283	1.539	3.183	1.914	1.754	1.403	2.329	2.122	1.408	0.549	1.560	3.560	1.645	3.094	1.447	1.088	0.466	0.506	0.526	0.453	0.369	0.391	2.731
14493	chr8	97200892	97205279	+	0	NA	Intergenic	Intergenic	-657112	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	8.460	0.831	0.509	6.464	3.347	2.635	7.652	10.428	5.423	5.765	3.902	4.888	8.116	9.375	8.847	11.156	7.315	8.512	2.157	1.778	1.565	5.021	2.083	1.624	12.411
13259	chr7	72788714	72790583	+	0	NA	Intergenic	Intergenic	312420	NR_046024	625243	Mm.261798	NR_046024	ENSMUSG00000108383	Gm6567	-	predicted gene 6567	ncRNA	2.958	3.702	0.691	3.938	1.468	1.086	2.385	3.376	2.329	5.742	1.308	1.321	4.074	4.287	4.195	5.391	3.487	3.575	2.305	1.176	0.934	2.697	1.937	1.546	6.982
5040	chr15	10601128	10606208	+	0	NA	non-coding (NR_033541, exon 2 of 3)	non-coding (NR_033541, exon 2 of 3)	3375	NR_033541	100038608	Mm.450744	NR_033541		Gm10389	ENSMUSG00000072658	predicted gene 10389	ncRNA	6.043	2.370	0.934	2.759	2.926	1.455	5.907	8.997	4.149	4.310	2.750	1.658	7.607	4.951	4.657	5.313	5.728	5.014	0.578	0.841	0.346	0.453	0.445	0.422	4.447
3399	chr12	71644088	71646754	+	0	NA	Intergenic	L1M3e|LINE|L1	104814	NR_045941	73815	Mm.416916	NR_045941		4930404H11Rik	-	RIKEN cDNA 4930404H11 gene	ncRNA	2.086	1.592	0.691	1.205	0.732	0.668	1.174	1.065	0.958	0.558	6.686	3.002	0.963	1.090	1.496	1.723	1.964	1.636	0.574	0.614	0.628	1.211	0.831	0.540	2.273
12472	chr6	92040409	92042751	+	0	NA	intron (NM_172731, intron 5 of 20)	MLT1G3|LTR|ERVL-MaLR	-49838	NM_011630	22026	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	8.374	13.861	3.505	11.245	5.854	4.271	11.163	10.961	5.169	18.773	6.699	3.944	9.123	11.814	10.487	14.244	7.869	10.229	6.400	1.634	3.260	7.294	3.824	6.291	17.479
15117	chr9	57314844	57316783	+	0	NA	Intergenic	MMERGLN_LTR|LTR|ERV1	-53214	NM_028820	74211	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	3.337	1.476	0.159	2.402	0.857	0.686	2.931	2.242	2.069	3.757	0.702	1.049	1.887	2.770	3.330	3.336	1.554	2.958	7.044	4.431	3.702	6.707	6.339	5.754	5.456
12163	chr6	37663336	37665125	+	0	NA	Intergenic	Intergenic	134057	NM_145364	208665	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	2.619	3.663	2.065	1.679	1.258	1.695	0.646	0.486	1.582	1.597	3.546	2.792	0.551	1.478	1.146	nan	1.037	nan	4.342	4.931	3.908	8.085	2.634	2.524	1.431
2844	chr11	102998250	102999407	+	0	NA	intron (NM_026551, intron 3 of 4)	intron (NM_026551, intron 3 of 4)	1093	NR_105896	102466988		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	1.563	nan	1.269	1.498	2.615	1.873	0.910	2.112	2.088	1.699	0.723	1.838	1.100	3.053	1.221	1.705	2.203	1.721	0.714	nan	1.925	0.358	nan	nan	1.461
10620	chr4	132062901	132071419	+	0	NA	intron (NM_183428, intron 1 of 20)	intron (NM_183428, intron 1 of 20)	4937	NM_183428	269587	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	5.578	4.238	1.577	5.430	4.164	2.715	3.373	6.393	4.360	6.532	4.408	2.495	4.572	7.492	5.705	7.209	3.512	6.267	2.971	1.437	1.402	3.108	1.724	1.554	8.125
6804	chr17	67041763	67048340	+	0	NA	intron (NM_008984, intron 6 of 30)	intron (NM_008984, intron 6 of 30)	-18816	NR_049205	100885844		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	7.535	0.611	0.198	3.658	3.971	2.123	14.171	8.205	6.209	7.058	2.004	0.822	10.920	12.630	15.045	15.658	9.465	10.666	0.934	0.647	0.371	1.147	0.758	0.321	12.788
5230	chr15	59476028	59486047	+	0	NA	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	106839	NM_001164604	68501	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	10.493	9.806	2.839	nan	5.026	3.076	13.318	16.022	6.448	9.901	5.770	3.788	12.976	12.626	12.975	11.960	8.881	10.592	7.155	4.194	3.365	8.058	5.398	4.390	13.761
3575	chr12	86789883	86798995	+	0	NA	Intergenic	ID_B1|SINE|B4	60070	NM_001195767	627607	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	9.506	3.092	1.567	5.606	7.310	4.837	6.911	8.525	5.852	6.584	4.202	3.711	9.033	10.693	8.534	11.162	8.669	7.628	3.164	1.881	1.952	3.577	2.477	1.966	nan
11882	chr5	140208263	140212757	+	0	NA	intron (NM_010752, intron 10 of 17)	MTEa|LTR|ERVL-MaLR	111042	NM_010752	17120	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	4.957	1.383	0.490	4.798	3.392	1.845	6.638	8.056	4.212	5.406	5.381	3.684	6.761	9.960	6.793	7.068	3.845	5.371	4.434	1.797	1.977	2.999	nan	2.136	7.613
13327	chr7	82703344	82704735	+	0	NA	intron (NM_175317, intron 15 of 19)	intron (NM_175317, intron 15 of 19)	51605	NR_046004	77800	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	4.171	2.028	0.968	3.888	3.011	1.066	3.327	4.358	3.216	3.245	2.948	2.593	5.891	4.187	4.083	4.057	3.573	6.705	0.930	1.088	0.453	1.083	0.771	0.379	2.693
13106	chr7	31566418	31571457	+	0	NA	Intergenic	L1_Mus3|LINE|L1	136817	NM_001198871	100043836	Mm.296883	NM_001198871	ENSMUSG00000094053	Scgb2b7	Abpbg7|Gm4684	secretoglobin, family 2B, member 7	protein-coding	2.322	1.191	0.584	1.748	1.891	1.150	2.986	3.950	1.857	2.355	1.832	0.896	3.120	4.460	2.960	3.201	4.280	2.161	1.163	1.162	0.799	1.100	1.041	1.035	4.490
3031	chr11	117168153	117182848	+	0	NA	Intergenic	Intergenic	-24161	NM_001113486	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	5.296	7.496	1.531	5.619	2.346	1.180	nan	4.674	2.458	3.223	2.680	2.487	2.952	4.212	3.917	3.810	1.879	nan	3.017	nan	1.525	3.370	0.872	0.751	5.707
5775	chr16	10296369	10314010	+	0	NA	intron (NM_007929, intron 1 of 4)	B1_Mus2|SINE|Alu	8779	NM_007929	13731	Mm.246009	NM_007929	ENSMUSG00000022505	Emp2	XMP	epithelial membrane protein 2	protein-coding	nan	2.671	1.425	5.347	4.368	2.648	nan	6.886	4.924	5.669	3.130	2.074	6.715	7.426	7.467	10.738	4.390	9.075	2.037	0.902	0.825	1.844	1.341	0.899	9.589
7075	chr18	23999000	24008260	+	0	NA	exon (NM_011755, exon 3 of 3)	exon (NM_011755, exon 3 of 3)	13996	NM_011755	22694	Mm.290596	NM_011755	ENSMUSG00000063281	Zfp35	Zfp-35|Znf271|mszf13|mszf20-1|mszf28|mszf68	zinc finger protein 35	protein-coding	1.461	8.498	4.484	1.539	0.727	0.278	0.625	1.152	1.486	1.105	0.439	0.522	0.557	0.758	0.859	nan	0.881	1.339	nan	0.811	0.635	nan	0.536	0.369	1.141
7767	chr19	41064315	41072193	+	0	NA	intron (NM_153520, intron 3 of 5)	intron (NM_153520, intron 3 of 5)	8859	NM_153520	226115	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	nan	11.664	5.740	1.575	0.690	0.327	0.709	nan	1.273	1.567	2.735	1.893	1.434	0.815	1.266	1.873	nan	1.511	1.259	1.407	0.949	1.270	0.837	0.377	1.300
1062	chr1	195941048	195945090	+	0	NA	Intergenic	Intergenic	-766354	NM_007758	12902	Mm.235387	NM_007758	ENSMUSG00000026616	Cr2	C3DR|CD21|CD35|Cr-1|Cr-2|Cr1	complement receptor 2	protein-coding	3.438	0.420	0.163	1.398	1.126	0.453	3.084	1.605	3.165	2.613	0.246	0.399	3.198	2.527	3.526	6.757	6.368	3.063	0.463	0.485	0.295	0.745	nan	0.363	3.194
3159	chr12	4605474	4606606	+	0	NA	intron (NM_011365, intron 1 of 38)	B1F|SINE|Alu	13032	NM_001198968	20403	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	5.660	8.034	8.111	2.226	2.333	2.230	1.443	2.217	1.986	1.413	1.929	4.063	1.270	1.396	1.033	1.466	2.311	1.626	1.570	3.528	1.881	1.293	2.603	2.447	1.589
14716	chr8	124471101	124482719	+	0	NA	Intergenic	Intergenic	-42974	NM_171824	209966	Mm.234233	NM_171824	ENSMUSG00000050751	Pgbd5	2900019M05Rik|AI854313	piggyBac transposable element derived 5	protein-coding	5.419	nan	2.071	nan	3.124	2.275	nan	4.907	3.051	5.392	3.184	1.990	3.890	5.259	nan	5.617	4.414	4.440	nan	2.591	2.386	6.214	2.499	nan	nan
7392	chr18	75208507	75212368	+	0	NA	intron (NM_027727, intron 14 of 16)	intron (NM_027727, intron 14 of 16)	86880	NR_045394	100503117	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	1.856	nan	0.406	3.190	2.474	1.733	1.515	1.437	1.260	nan	0.480	0.600	3.733	5.701	2.737	1.131	1.599	1.017	0.692	nan	0.776	0.928	0.714	0.676	1.698
3112	chr11	120350336	120363920	+	0	NA	Intergenic	B2_Mm1t|SINE|B2	-4406	NM_172802	238021	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	3.598	nan	0.793	4.110	2.372	1.065	nan	7.241	3.702	nan	2.336	2.242	5.479	6.429	7.128	7.774	4.037	5.531	1.206	nan	0.773	1.811	0.818	0.721	6.483
15216	chr9	65926924	65930561	+	0	NA	intron (NM_173185, intron 1 of 13)	intron (NM_173185, intron 1 of 13)	19732	NM_173185	214897	Mm.325816	NM_173185	ENSMUSG00000032384	Csnk1g1	9130020E21Rik	casein kinase 1, gamma 1	protein-coding	4.483	1.726	1.330	3.886	2.871	2.222	3.116	3.061	4.456	5.132	1.445	0.739	5.214	6.266	nan	5.387	3.105	5.844	nan	1.429	1.358	2.072	0.883	0.508	6.045
7836	chr19	46690793	46699640	+	0	NA	intron (NM_025563, intron 1 of 4)	intron (NM_025563, intron 1 of 4)	5310	NM_025563	66439	Mm.87163	NM_025563	ENSMUSG00000062376	Borcs7	2010012O05Rik|4930569L17Rik|AI413851|AI467257	BLOC-1 related complex subunit 7	protein-coding	3.961	2.048	0.703	4.270	3.595	1.694	4.092	6.161	2.538	3.774	3.495	2.290	2.637	4.014	3.866	4.852	4.359	nan	0.534	0.834	0.704	2.226	0.459	0.302	5.999
3169	chr12	8517006	8518649	+	0	NA	Intergenic	MTC|LTR|ERVL-MaLR	-17842	NM_007483	11852	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	4.487	0.748	0.370	2.248	1.771	0.674	1.776	3.795	2.447	2.082	4.691	2.709	2.387	3.851	2.098	3.032	1.423	2.438	1.930	1.470	0.647	3.700	1.473	0.738	2.963
12996	chr7	20535009	20539271	+	0	NA	Intergenic	(TAAA)n|Simple_repeat|Simple_repeat	3303	NM_001166752	667504	Mm.480252	NM_001166752	ENSMUSG00000095383	Vmn1r152	EG667504|Gm8673	vomeronasal 1 receptor 152	protein-coding	1.185	1.298	0.759	1.827	1.395	1.713	5.192	8.368	2.118	1.814	0.621	0.827	5.847	6.464	4.424	2.878	1.324	3.098	0.313	0.358	0.259	0.604	0.282	0.224	1.391
7381	chr18	74674947	74676565	+	0	NA	intron (NM_201600, intron 14 of 38)	intron (NM_201600, intron 14 of 38)	102699	NR_028560	100217466		NR_028560		Scarna17	MBII-119	small Cajal body-specific RNA 17	ncRNA	2.562	nan	0.225	2.988	1.746	0.488	1.579	1.367	2.737	3.891	0.892	0.640	6.633	4.757	2.808	6.647	3.736	5.656	3.085	nan	0.451	3.078	0.910	0.532	4.205
2609	chr11	87930702	87934981	+	0	NA	Intergenic	Intergenic	-17838	NM_146412	258407	Mm.271337	NM_146412	ENSMUSG00000060787	Olfr464	MOR240-2	olfactory receptor 464	protein-coding	nan	1.112	0.520	nan	2.634	1.574	1.283	1.657	1.827	1.850	5.744	2.847	0.790	1.721	1.655	2.199	1.423	1.919	10.408	10.166	8.985	10.880	11.531	10.295	nan
10561	chr4	129156383	129160099	+	0	NA	intron (NM_001347203, intron 7 of 8)	intron (NM_001347203, intron 7 of 8)	21242	NM_027402	384061	Mm.44075	NM_027402	ENSMUSG00000001334	Fndc5	1500001L03Rik|AI836596|C87088|PeP|Pxp	fibronectin type III domain containing 5	protein-coding	1.450	0.861	0.932	0.862	1.302	1.130	4.726	5.517	1.070	0.718	1.750	1.387	2.157	2.208	nan	3.921	2.802	1.604	0.997	0.632	1.405	1.016	0.714	1.075	2.203
10403	chr4	116050183	116052220	+	0	NA	intron (NM_028142, intron 1 of 5)	intron (NM_028142, intron 1 of 5)	2675	NM_028142	72181	Mm.282560	NM_028142	ENSMUSG00000028706	Nsun4	2310010O12Rik|2810405F18Rik|AI507900|Shtap	NOL1/NOP2/Sun domain family, member 4	protein-coding	2.121	0.633	0.514	1.647	2.386	1.727	2.280	2.332	1.873	1.710	1.008	0.980	2.170	3.026	3.100	nan	1.257	2.357	1.057	0.602	0.635	0.775	0.566	0.440	1.264
6476	chr17	28405790	28412284	+	0	NA	intron (NM_010220, intron 8 of 10)	B1_Mur3|SINE|Alu	-43894	NM_021478	22157	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	5.108	0.855	0.456	3.032	2.096	1.658	8.624	6.264	3.169	4.746	5.363	5.123	5.328	7.200	6.809	6.865	4.531	5.716	2.097	1.005	1.023	2.752	1.413	1.352	10.184
12457	chr6	91332656	91334249	+	0	NA	Intergenic	Intergenic	77917	NM_009527	22421	Mm.56964	NM_009527	ENSMUSG00000030093	Wnt7a	AI849442|Wnt-7a|px|tw	wingless-type MMTV integration site family, member 7A	protein-coding	1.852	0.303	0.631	2.103	1.078	0.188	5.863	4.722	3.248	2.180	0.669	0.612	4.422	5.283	5.875	7.726	1.674	6.534	nan	0.052		0.966	0.228	0.177	5.132
10859	chr4	144669361	144673863	+	0	NA	intron (NM_001085504, intron 3 of 3)	MTD|LTR|ERVL-MaLR	14756	NM_001085504	230890	Mm.457843	NM_001085504	ENSMUSG00000078505	Gm436	-	predicted gene 436	protein-coding	1.679	nan	1.248	2.516	1.664	0.829	2.106	3.150	4.888	5.102	1.674	1.303	3.080	2.894	1.543	4.005	2.060	3.341	1.162	0.418	0.517	0.842	0.601	0.474	1.337
445	chr1	92918199	92922680	+	0	NA	3' UTR (NM_181405, exon 11 of 11)	3' UTR (NM_181405, exon 11 of 11)	9614	NM_181405	108657	Mm.200971	NM_181405	ENSMUSG00000026269	Rnpepl1	1110014H17Rik|AI894167	arginyl aminopeptidase (aminopeptidase B)-like 1	protein-coding	6.485	1.200	0.782	4.436	7.371	4.779	6.129	4.605	5.574	7.387	3.139	3.168	7.762	8.153	6.365	7.425	4.126	5.576	1.019	0.900	0.875	nan	0.722	0.904	5.062
12733	chr6	128150246	128151834	+	0	NA	Intergenic	Lx5c|LINE|L1	-7462	NM_175414	109246	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597	tetraspanin 9	protein-coding	4.738	2.443	0.942	4.623	2.601	1.176	3.894	5.245	2.436	3.884	1.631	1.370	4.338	6.818	5.812	7.347	4.509	3.262	1.554	1.624	0.799	2.374	1.150	1.319	6.234
9675	chr3	106914337	106919225	+	0	NA	Intergenic	L4_A_Mam|LINE|RTE-X	-94224	NM_146489	258482	Mm.377527	NM_146489	ENSMUSG00000043529	Olfr266	MOR122-2	olfactory receptor 266	protein-coding	0.326	0.920	0.463	0.939	0.157	0.026	0.379	0.210	0.275	0.161	0.276	0.145	0.153	0.215	nan	0.525	0.375	0.415	3.373	1.687	0.752	6.932	1.993	0.978	0.413
5363	chr15	76524283	76528957	+	0	NA	Intergenic	Intergenic	-4491	NM_130893	170729	Mm.218747	NM_130893	ENSMUSG00000048385	Scrt1	-	scratch family zinc finger 1	protein-coding	nan	2.534	0.604	4.251	1.411	1.004	nan	12.401	2.427	nan	nan	1.860	6.504	6.778	5.717	7.355	nan	5.134	1.668	0.879	0.901	nan	0.723	0.520	5.782
9919	chr4	8864661	8867865	+	0	NA	exon (NM_001277149, exon 38 of 38)	exon (NM_001277149, exon 38 of 38)	175857	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.898	3.082	2.386	1.298	1.460	0.792	0.334	nan	0.980	0.992	1.129	0.990	0.278	0.558	0.626	0.781	0.539	0.943	4.985	nan	3.388	8.093	8.487	5.618	0.763
14620	chr8	114253303	114260529	+	0	NA	intron (NM_173016, intron 3 of 8)	intron (NM_173016, intron 3 of 8)	51276	NM_173016	270097	Mm.334825	NM_173016	ENSMUSG00000046844	Vat1l	9430073I07|AI427515|mKIAA1576	vesicle amine transport protein 1 like	protein-coding	4.532	2.499	0.433	7.314	3.098	1.644	2.960	5.779	3.338	4.591	2.456	1.736	3.529	5.009	4.653	6.308	2.860	6.339	1.941	1.243	1.419	4.012	1.150	0.782	6.596
12360	chr6	83434246	83435267	+	0	NA	intron (NM_001347313, intron 3 of 11)	intron (NM_001347313, intron 3 of 11)	6922	NM_183138	194388	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	3.010	2.029	1.733	nan	1.790	0.290	1.747	1.862	1.955	1.759	1.062	1.305	1.907	4.820	2.751	3.005	3.116	nan	nan	1.859	1.371	1.360	1.123	0.580	2.587
4002	chr13	38613698	38624714	+	0	NA	exon (NM_139063, exon 3 of 5)	exon (NM_139063, exon 3 of 5)	15903	NM_139063	17828	Mm.261554	NM_139063	ENSMUSG00000038982	Bloc1s5	1810074A19Rik|Muted|mu	biogenesis of lysosomal organelles complex-1, subunit 5, muted	protein-coding	4.160	10.979	3.974	3.820	1.740	0.950	nan	nan	nan	nan	3.278	1.588	4.181	6.090	5.257	nan	3.147	nan	1.693	1.423	0.904	2.400	0.935	0.915	nan
11172	chr5	36021042	36023559	+	0	NA	intron (NM_030889, intron 25 of 26)	intron (NM_030889, intron 25 of 26)	128981	NM_027373	70292	Mm.125167	NM_027373	ENSMUSG00000029094	Afap1	2600003E23Rik|9630044L16Rik|AI848729|Afap|mKIAA3018	actin filament associated protein 1	protein-coding	1.035	0.627	0.250	2.128	0.862	0.281	2.083	2.988	1.348	3.609	0.561	0.989	3.224	3.980	nan	2.776	2.311	nan	0.361	0.303	0.324	0.562	0.340	0.187	3.111
3866	chr13	20279392	20281284	+	0	NA	intron (NM_080288, intron 8 of 21)	intron (NM_080288, intron 8 of 21)	189831	NM_080288	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	5.293	2.460	0.728	1.691	0.503	0.452	3.796	3.821	2.546	2.002	1.242	0.316	3.666	4.089	3.940	4.737	2.438	3.953	1.156	0.805	0.907	1.479	0.596	0.442	5.358
8544	chr2	117663199	117666756	+	0	NA	Intergenic	Intergenic	147825	NR_126427	100504728	Mm.413174	NR_126427		Gm13985	OTTMUSG00000015235	predicted gene 13985	ncRNA	4.947	0.906	0.698	2.647	3.947	1.537	5.139	6.726	3.802	3.216	3.772	2.436	5.608	5.688	4.669	nan	5.426	3.641	1.355	0.928	0.700	2.155	0.938	1.185	4.437
4741	chr14	62262643	62269488	+	0	NA	Intergenic	L1Md_T|LINE|L1	26914	NM_173419	239133	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	7.415	10.051	3.817	5.780	3.745	1.829	3.234	4.729	4.970	6.415	7.414	4.100	5.028	5.059	5.190	5.343	4.220	6.373	6.502	2.132	1.774	3.719	3.433	3.070	8.273
3781	chr12	114369825	114373954	+	0	NA	Intergenic	Intergenic	97577	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	nan	1.226	0.470	7.326	4.091	2.186	5.068	4.365	4.235	5.205	1.017	0.804	6.812	9.009	6.803	8.726	5.501	7.902	0.864	0.422	0.861	1.287	0.567	0.300	14.285
6763	chr17	57198296	57202977	+	0	NA	Intergenic	CT-rich|Low_complexity|Low_complexity	-6455	NM_019418	50930	Mm.483369	NM_019418	ENSMUSG00000005824	Tnfsf14	HVEM-L|HVEML|LIGHT|LTg|Ly113|Tnlg1d	tumor necrosis factor (ligand) superfamily, member 14	protein-coding	6.693	nan	1.583	7.011	4.236	2.342	9.616	7.057	5.248	7.650	2.627	2.945	7.457	10.016	10.193	12.689	8.393	7.433	4.890	2.010	2.403	5.713	3.260	3.847	15.327
9898	chr4	5717767	5721619	+	0	NA	intron (NM_173426, intron 1 of 2)	intron (NM_173426, intron 1 of 2)	75514	NM_173426	242297	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding	5.130	0.569	0.544	3.215	4.632	2.397	4.000	2.685	4.165	5.020	1.052	0.411	3.220	6.138	3.789	5.372	2.960	6.425	0.887	nan	0.504	0.538	0.787	0.593	5.008
15442	chr9	102909168	102913467	+	0	NA	Intergenic	L1ME1|LINE|L1	76397	NM_001042607	20187	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	7.559	1.677	0.486	8.256	2.831	1.173	7.266	5.847	3.863	7.682	3.956	1.253	6.321	9.853	7.294	8.591	4.683	7.489	0.724	0.796	0.622	0.823	0.678	0.383	13.871
7099	chr18	32295147	32298648	+	0	NA	Intergenic	Intergenic	56566	NM_133658	13872	Mm.282335	NM_133658	ENSMUSG00000024382	Ercc3	BTF2 p89|Ercc-3|XPB	excision repair cross-complementing rodent repair deficiency, complementation group 3	protein-coding	3.144	0.667	0.640	0.617	0.640	0.248	8.509	6.597	0.963	0.728	1.213	1.644	2.435	0.986	1.627	nan	1.786	1.157	nan	0.598	0.537	nan	1.049	0.980	1.543
4603	chr14	35330998	35331767	+	0	NA	intron (NM_008166, intron 8 of 15)	intron (NM_008166, intron 8 of 15)	436773	NR_029774	723847		NR_029774	ENSMUSG00000065481	Mir346	Mirn346|mir-346|mmu-mir-346	microRNA 346	ncRNA	4.754	4.957	2.141	1.149	0.747	1.254	3.225	5.391	0.919	2.156	0.591	0.741	5.065	4.264	3.203	6.202	3.203	3.721	0.339	0.676	0.190	0.941	0.351	0.090	7.695
6284	chr16	98071296	98074060	+	0	NA	intron (NR_015491, intron 1 of 4)	intron (NR_015491, intron 1 of 4)	9761	NR_015491	320586	Mm.442230	NR_015491		A630089N07Rik	-	RIKEN cDNA A630089N07 gene	ncRNA	11.806	12.863	5.118	11.025	7.231	5.675	10.765	12.304	6.756	16.185	7.346	4.240	9.234	11.224	9.249	12.636	8.818	11.055	7.814	6.850	5.762	7.093	8.898	7.722	16.557
1858	chr10	127578045	127588634	+	0	NA	intron (NM_008512, intron 19 of 88)	intron (NM_008512, intron 19 of 88)	37809	NM_008512	16971	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	6.057	nan	0.871	4.157	6.608	4.737	6.024	7.449	3.556	4.078	2.208	1.429	4.673	8.383	4.891	4.702	7.098	4.637	0.901	1.237	1.285	0.805	nan	1.431	5.113
6486	chr17	28826426	28832129	+	0	NA	intron (NM_001081315, intron 10 of 12)	intron (NM_001081315, intron 10 of 12)	28151	NM_001081315	268936	Mm.291877	NM_199061	ENSMUSG00000063952	Brpf3	AI413466|AW493400|mKIAA1286	bromodomain and PHD finger containing, 3	protein-coding	6.779	6.116	2.075	7.223	3.091	2.238	6.681	6.408	4.555	8.210	4.806	3.233	5.633	8.298	6.902	8.096	5.050	6.984	4.701	1.649	1.965	5.139	2.668	3.128	9.898
718	chr1	140511742	140517281	+	0	NA	intron (NM_001081027, intron 17 of 27)	intron (NM_001081027, intron 17 of 27)	141891	NR_040604	75910	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA	8.011	16.164	7.310	6.358	2.635	1.084	4.837	4.781	4.595	6.922	5.063	3.651	5.790	6.529	6.687	9.056	6.140	6.479	2.672	1.782	1.382	3.406	1.481	1.202	nan
7678	chr19	28591914	28594298	+	0	NA	intron (NM_175459, intron 2 of 10)	MIRb|SINE|MIR	-85118	NR_045330	320176	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	nan	0.617	0.274	nan	0.199		0.322	3.038	1.459	0.852	8.273	2.184	1.677	1.474	1.334	1.169	0.875	1.138	nan	0.621	0.257	1.349	nan	0.445	1.417
6520	chr17	30706566	30708314	+	0	NA	intron (NM_013811, intron 28 of 92)	B3A|SINE|B2	80504	NM_013811	13417	Mm.426017	NM_013811	ENSMUSG00000033826	Dnah8	ATPase|Dnahc8|Hst6.7b|P1-Loop	dynein, axonemal, heavy chain 8	protein-coding	2.910	1.030	0.604	2.229	5.300	3.445	3.066	3.283	2.450	2.493	1.722	0.986	3.093	4.416	2.296	3.488	3.015	5.090	1.270	1.008	1.179	0.662	0.560	0.988	3.261
4689	chr14	55917474	55922369	+	0	NA	Intergenic	Intergenic	-19689	NM_001082975	654795	Mm.486218	NM_001082975	ENSMUSG00000022223	Sdr39u1	2310014G06Rik	short chain dehydrogenase/reductase family 39U, member 1	protein-coding	0.860	nan	0.758	0.507	0.291	0.203	0.347	nan	0.383	0.349	0.244	0.084	0.147	0.324	0.378	0.421	0.266	0.726	6.976	5.568	2.340	8.635	6.501	3.924	0.472
14618	chr8	114164567	114170905	+	0	NA	Intergenic	Intergenic	34162	NM_024437	67528	Mm.27889	NM_024437	ENSMUSG00000031767	Nudt7	1300007B24Rik|2210404C19Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 7	protein-coding	9.516	8.222	5.493	5.864	5.053	3.881	6.505	9.336	5.455	7.266	5.319	5.224	8.316	7.341	5.205	nan	6.764	6.119	2.149	2.678	2.893	2.962	2.294	2.199	5.720
11176	chr5	36518651	36523586	+	0	NA	intron (NM_133910, intron 5 of 13)	intron (NM_133910, intron 5 of 13)	9505	NM_001113364	100855	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	2.823	0.715	0.372	1.756	3.040	1.407	3.801	5.317	2.550	2.941	2.515	1.289	3.064	6.756	nan	5.210	nan	2.976	1.222	0.726	0.415	1.223	0.939	1.031	4.052
15302	chr9	74818729	74820502	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-28822	NR_045284	100503019	Mm.482658	NR_045284	ENSMUSG00000066477	Gm16551	-	predicted gene 16551	ncRNA	4.068	1.221	0.766	3.282	1.781	1.893	2.383	3.809	3.513	3.543	1.465	1.203	3.187	5.107	2.620	4.125	3.444	3.043	1.108	2.038	1.269	1.353	0.805	0.864	nan
12354	chr6	83250549	83252278	+	0	NA	intron (NM_001166067, intron 2 of 24)	RSINE1|SINE|B4	14038	NM_001166067	232156	Mm.333189	NM_001166067	ENSMUSG00000068323	Slc4a5	C330006M16|C330016K18Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 5	protein-coding	3.235	0.983	0.457	2.162	2.395	0.929	10.702	2.640	3.833	5.027	1.111	0.301	4.075	7.078	6.884	8.539	6.234	4.640	nan	0.302	0.213	0.363	0.404	0.111	6.028
868	chr1	172841113	172843895	+	0	NA	Intergenic	MLT2C1|LTR|ERVL	52550	NM_011318	20219	Mm.330510	NM_011318	ENSMUSG00000026542	Apcs	Sap	serum amyloid P-component	protein-coding	5.497	0.771	0.773	nan	1.962	0.611	0.879	1.506	nan	1.967	1.144	0.550	nan	2.499	nan	1.249	1.047	1.178	0.406	0.909	0.264	nan	nan	0.254	nan
13448	chr7	104092285	104096698	+	0	NA	Intergenic	Lx3C|LINE|L1	-9413	NM_207144	258247	Mm.377391	NM_207144	ENSMUSG00000051340	Olfr645	MOR13-5	olfactory receptor 645	protein-coding	0.765	0.983	0.411	0.429	0.605	0.306	0.526	0.891	0.821	0.804	7.544	0.771	0.716	nan	0.472	nan	0.576	nan	nan	0.775	0.438	0.586	0.465	0.362	0.500
10538	chr4	128098860	128100855	+	0	NA	intron (NM_001281955, intron 2 of 70)	intron (NM_001281955, intron 2 of 70)	66740	NM_029137	74989	Mm.388887	NM_029137		Csmd2os	4930465A12Rik	CUB and Sushi multiple domains 2, opposite strand	protein-coding	5.225	0.412	0.564	2.600	3.908	2.033	1.397	2.232	2.918	4.393	0.632	0.992	4.465	5.663	2.911	5.669	4.666	3.461	1.542	1.597	0.824	0.882	2.335	1.730	4.736
15322	chr9	75861080	75866336	+	0	NA	intron (NM_007555, intron 3 of 6)	intron (NM_007555, intron 3 of 6)	88343	NM_007555	12160	Mm.428950	NM_007555	ENSMUSG00000032179	Bmp5	AU023399|se	bone morphogenetic protein 5	protein-coding	5.337	0.599	0.320	4.308	2.571	1.241	6.592	5.332	5.823	5.950	5.769	4.565	8.009	8.034	6.600	7.954	3.952	8.179	4.383	nan	1.208	3.769	2.071	1.813	nan
5189	chr15	57711237	57713399	+	0	NA	intron (NM_199449, intron 1 of 3)	intron (NM_199449, intron 1 of 3)	17651	NM_199449	387609	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	5.530	1.350	0.760	2.143	2.133	1.369	6.440	6.969	2.524	2.539	1.364	0.977	4.848	4.695	5.577	3.803	5.317	4.450	2.356	2.229	0.548	3.259	1.321	0.356	2.622
2035	chr11	23205153	23207897	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	-49516	NM_001035226	103573	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	7.742	12.203	3.329	10.969	5.679	4.093	7.198	6.479	5.861	15.890	6.076	3.922	7.480	8.786	8.586	10.137	5.590	9.347	6.025	2.211	3.602	7.138	3.143	4.526	12.955
6073	chr16	42906800	42911114	+	0	NA	intron (NM_001285805, intron 1 of 10)	intron (NM_001285805, intron 1 of 10)	1312	NM_001285805	56490	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|ODA-8S|Oda8|Zfp288	zinc finger and BTB domain containing 20	protein-coding	8.468	1.890	1.397	6.876	5.404	3.339	4.083	4.230	7.182	6.925	4.410	4.389	7.630	6.448	4.070	5.545	5.750	8.916	5.774	4.396	2.131	3.612	4.900	3.194	nan
197	chr1	57027667	57029948	+	0	NA	Intergenic	MER3|DNA|hAT-Charlie	57338	NR_024325	329160	Mm.419039	NR_024325	ENSMUSG00000087022	9130024F11Rik	B530002L08|EG329160	RIKEN cDNA 9130024F11 gene	ncRNA	3.364	5.285	1.402	3.008	1.323	0.855	2.624	4.098	1.608	3.821	1.650	1.671	3.185	1.557	4.245	3.659	2.784	4.348	0.727	1.915	2.762	3.400	3.912	6.508	7.352
13153	chr7	51726988	51734296	+	0	NA	Intergenic	Intergenic	108812	NM_080853	140919	Mm.256618	NM_080853	ENSMUSG00000030500	Slc17a6	2900073D12Rik|DNPI|VGLUT2	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6	protein-coding	1.657	0.857	1.143	1.570	3.302	1.757	2.779	2.220	1.293	1.682	0.649	0.705	2.207	4.800	3.349	2.628	2.027	2.556	5.828	4.719	3.234	2.897	9.062	7.973	4.258
8719	chr2	138099485	138101053	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-156315	NM_001025431	228662	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	2.799	0.345	0.249	2.654	1.542	0.632	2.702	5.936	3.097	3.211	6.105	2.089	3.002	2.883	2.961	4.330	2.409	5.401	1.029	0.542	0.648	1.323	0.899	0.568	3.064
853	chr1	169316666	169319085	+	0	NA	Intergenic	L1Md_F2|LINE|L1	213589	NM_023284	66977	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	5.172	0.548	0.203	2.761	3.499	1.966	7.555	7.463	3.766	4.115	2.074	2.102	6.549	5.766	5.070	8.951	5.998	4.688	0.411	0.457	0.387	nan	nan	0.367	5.306
4024	chr13	41551094	41557429	+	0	NA	Intergenic	Intergenic	-51955	NM_001163572	621976	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	4.490	2.316	1.001	4.415	3.259	1.460	nan	nan	nan	3.819	3.264	2.039	2.217	4.546	4.075	4.466	2.269	5.285	2.016	1.554	0.816	2.358	1.433	0.986	4.730
5187	chr15	57649400	57651834	+	0	NA	Intergenic	Intergenic	-44050	NM_199449	387609	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	3.065	1.750	0.669	2.822	3.273	1.852	4.300	1.653	nan	4.233	0.875	0.737	5.717	7.261	3.042	3.519	5.258	4.059	0.751	1.381	1.736	2.124	1.331	0.903	2.771
8576	chr2	119372144	119375967	+	0	NA	3' UTR (NM_026574, exon 36 of 36)	3' UTR (NM_026574, exon 36 of 36)	22813	NM_026929	69065	Mm.35083	NM_026929	ENSMUSG00000027313	Chac1	1810008K03Rik	ChaC, cation transport regulator 1	protein-coding	8.794	4.030	1.266	6.396	3.736	2.151	5.775	9.686	5.616	6.612	6.177	2.813	7.241	8.336	7.278	9.477	7.511	9.181	2.779	1.849	1.717	3.156	1.997	1.960	7.830
7487	chr19	5105479	5110927	+	0	NA	non-coding (NR_045528, exon 16 of 16)	non-coding (NR_045528, exon 16 of 16)	-1207	NM_029576	76308	Mm.182563	NM_029576	ENSMUSG00000024870	Rab1b	1110011F09Rik	RAB1B, member RAS oncogene family	protein-coding	5.835	4.394	1.225	4.683	3.018	2.027	11.639	9.797	4.006	5.459	2.073	1.378	6.782	8.290	7.712	8.350	7.768	6.844	1.256	0.970	1.059	1.796	1.545	1.187	9.967
14068	chr8	23374259	23377204	+	0	NA	Intergenic	T-rich|Low_complexity|Low_complexity	-35771	NM_013834	20377	Mm.281691	NM_013834	ENSMUSG00000031548	Sfrp1	2210415K03Rik|AW011917|AW107218|AW742929|sFRP-1	secreted frizzled-related protein 1	protein-coding	5.019	nan	0.810	1.844	3.493	1.898	1.941	2.220	2.785	3.079	0.589	0.847	1.452	3.202	2.481	4.774	4.132	2.795	0.531	0.862	0.832	nan	0.655	0.646	4.045
6265	chr16	96074027	96079426	+	0	NA	intron (NM_001103179, intron 4 of 40)	B2_Mm1a|SINE|B2	5702	NM_001103179	93871	Mm.240871	NM_145125	ENSMUSG00000022914	Brwd1	5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5	bromodomain and WD repeat domain containing 1	protein-coding	5.058	0.827	0.835	3.467	4.191	2.229	3.553	3.807	nan	4.457	1.360	1.405	4.724	5.272	nan	6.091	4.913	5.280	3.576	3.449	3.262	2.934	6.118	4.292	3.979
4393	chr13	110084725	110087332	+	0	NA	intron (NM_023852, intron 3 of 4)	L1Md_F2|LINE|L1	182219	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	4.284	nan	0.490	3.600	3.136	1.844	2.516	2.757	4.549	4.118	1.601	1.611	3.586	4.143	3.242	4.580	2.643	nan	3.520	2.048	1.405	nan	2.295	1.333	3.041
2136	chr11	48889318	48890844	+	0	NA	intron (NM_001024230, intron 4 of 4)	intron (NM_001024230, intron 4 of 4)	12071	NM_001024230	432555	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	7.796	3.360	2.614	5.187	4.132	1.451	3.527	5.326	2.776	3.117	2.228	1.209	3.860	4.991	4.126	4.467	4.859	3.774	nan	1.418	0.959	nan	nan	0.185	4.402
11550	chr5	110659067	110661698	+	0	NA	3' UTR (NM_027156, exon 15 of 15)	3' UTR (NM_027156, exon 15 of 15)	5759	NR_105993	102466216		NR_105993	ENSMUSG00000099284	Mir7026	Gm27988|mmu-mir-7026	microRNA 7026	ncRNA	6.993	9.443	4.219	7.995	5.380	4.753	6.529	5.874	5.498	8.228	4.322	3.159	5.265	7.417	7.240	6.608	5.541	6.235	nan	3.065	3.693	4.224	5.092	4.162	7.993
2685	chr11	95549456	95550943	+	0	NA	Intergenic	ID_B1|SINE|B4	-35634	NM_130858	104079	Mm.22970	NM_130858	ENSMUSG00000046719	Nxph3	-	neurexophilin 3	protein-coding	6.226	10.264	3.548	7.570	2.166	1.504	3.298	4.952	3.146	4.429	4.660	2.542	2.252	4.425	3.562	3.141	nan	4.668	1.157	1.605	1.389	1.405	nan	nan	5.789
3517	chr12	81350717	81362961	+	0	NA	Intergenic	L1Md_A|LINE|L1	22647	NM_001038995	214321	Mm.444671	NM_001038995	ENSMUSG00000072974	Gm4787	Adam4b|EG214321	predicted gene 4787	protein-coding	5.145	2.030	0.468	4.672	3.545	2.373	4.240	4.337	3.957	5.444	4.852	2.236	4.634	6.658	5.333	nan	3.685	5.376	3.939	1.860	1.573	3.384	3.475	3.099	8.570
11717	chr5	124798358	124805605	+	0	NA	intron (NM_019536, intron 48 of 78)	intron (NM_019536, intron 48 of 78)	60240	NM_144819	215707	Mm.389693	NM_144819	ENSMUSG00000037979	Ccdc92	AW050178|D5Bwg0834e	coiled-coil domain containing 92	protein-coding	4.126	9.296	3.214	5.464	2.251	1.565	4.915	3.706	3.064	nan	5.071	2.575	2.978	4.765	nan	5.972	nan	nan	nan	4.732	3.965	8.612	nan	5.291	nan
3028	chr11	117085935	117095815	+	0	NA	Intergenic	Intergenic	13527	NR_105853	102465258		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	4.924	nan	0.661	1.800	2.630	2.106	8.813	nan	2.087	nan	1.383	1.147	4.110	5.401	5.083	5.769	4.390	nan	2.113	nan	2.304	2.210	1.383	1.496	7.655
13119	chr7	31870106	31873175	+	0	NA	Intergenic	L1_Mus1|LINE|L1	158975	NM_001270542	626305	Mm.454021	NM_001270542	ENSMUSG00000078759	Scgb1b7	ABPA7_A29|Abpa29|Abpa7|EG626305|Gm6662	secretoglobin, family 1B, member 7	protein-coding	2.902	2.557	0.657	3.155	1.752	0.968	1.514	2.716	2.525	3.160	5.728	2.632	1.876	2.455	2.081	2.228	1.351	2.657	0.842	0.820	0.519	0.774	0.483	0.253	2.731
3978	chr13	37543295	37554918	+	0	NA	Intergenic	Intergenic	203761	NM_010745	17084	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	6.233	nan	0.864	6.936	3.316	1.672	nan	nan	nan	5.880	2.886	2.515	4.263	7.449	4.701	nan	3.189	nan	1.333	1.889	1.209	2.333	1.577	0.989	nan
1111	chr10	17292391	17297980	+	0	NA	Intergenic	Intergenic	-199403	NR_038020	100504235	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	8.406	1.371	0.879	4.559	6.915	4.209	6.829	8.151	6.814	6.769	6.797	3.440	6.997	9.467	6.817	7.085	7.471	6.591	1.003	1.445	1.140	0.894	2.139	1.787	6.044
8500	chr2	103219725	103221068	+	0	NA	Intergenic	(TCTCCC)n|Simple_repeat|Simple_repeat	82800	NM_007914	13661	Mm.10724	NM_007914	ENSMUSG00000012350	Ehf	9030625L19Rik|AU019492	ets homologous factor	protein-coding	3.001	0.849	0.493	2.361	1.492	0.883	1.675	3.464	2.018	3.430	1.429	0.758	2.950	5.093	3.160	3.591	3.419	2.413	0.499	0.747	0.487	nan	0.309	0.341	3.552
14159	chr8	37210180	37212517	+	0	NA	Intergenic	Intergenic	-187110	NR_126063	414128	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	4.151	1.402	1.469	1.234	1.291	0.791	4.255	5.986	3.839	3.993	6.257	2.247	6.256	3.983	4.265	4.304	3.247	3.427	0.636	0.397	0.464	0.662	0.894	0.768	2.658
11459	chr5	96435998	96442442	+	0	NA	intron (NM_175473, intron 2 of 73)	Tigger17a|DNA|TcMar-Tigger	65265	NM_175473	231470	Mm.291120	NM_175473	ENSMUSG00000034687	Fras1	E130113P14Rik|bl|mKIAA1500	Fraser extracellular matrix complex subunit 1	protein-coding	1.371	1.044	0.845	0.942	0.356	0.370	0.731	1.501	0.889	0.732	0.307	0.239	1.202	0.876	1.155	0.974	1.119	1.480	5.920	5.051	2.538	6.755	6.927	4.445	0.663
3249	chr12	27063343	27065489	+	0	NA	Intergenic	RLTR17B_Mm|LTR|ERVK	50579	NR_045052	100504347	Mm.130500	NR_045052		Gm20187	-	predicted gene, 20187	ncRNA	6.081	0.489	0.436	2.713	2.622	1.227	2.813	2.380	2.858	3.183	0.645	0.198	5.939	5.243	6.173	6.640	4.066	6.719	0.726	0.303	0.381	0.584	0.205	0.271	9.281
8771	chr2	147751216	147755662	+	0	NA	Intergenic	Intergenic	42746	NR_046014	381384	Mm.259809	NR_046014	ENSMUSG00000051986	A530006G24Rik	Gm1003	RIKEN cDNA A530006G24 gene	ncRNA	5.381	0.599	0.318	2.350	2.340	0.804	6.987	7.402	3.944	5.199	2.269	0.966	7.435	8.126	6.059	8.263	5.903	7.106	nan	1.756	0.560	3.513	1.342	1.071	5.552
13535	chr7	109265057	109266140	+	0	NA	Intergenic	Tigger6a|DNA|TcMar-Tigger	-90391	NM_001302205	109594	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding	3.543	1.179	0.617	2.088	4.603	3.113	4.509	1.998	2.390	2.362	1.451	0.666	1.971	3.220	1.681	2.899	3.859	3.217	nan	1.972	0.867	0.897	1.932	2.133	3.206
4608	chr14	37781451	37784036	+	0	NA	Intergenic	L1Md_A|LINE|L1	-647421	NM_078478	66092	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	5.255	5.995	1.321	5.616	2.103	1.283	4.162	7.825	4.009	7.124	4.810	2.544	5.227	6.532	6.408	8.084	3.936	6.700	3.541	1.417	1.444	3.897	1.096	2.126	9.586
2238	chr11	57772449	57776252	+	0	NA	intron (NM_134189, intron 7 of 11)	intron (NM_134189, intron 7 of 11)	27117	NR_131042	76516	Mm.28485	NR_131042	ENSMUSG00000087165	2010001A14Rik	-	RIKEN cDNA 2010001A14 gene	ncRNA	4.051	2.764	1.364	3.607	5.771	4.069	3.899	3.191	2.370	3.283	2.498	1.842	2.955	6.411	3.577	4.766	4.041	3.762	nan	2.069	1.851	2.065	2.311	2.182	4.307
14194	chr8	46063364	46066405	+	0	NA	intron (NM_207213, intron 6 of 17)	intron (NM_207213, intron 6 of 17)	54282	NM_026278	67620	Mm.383914	NM_026278	ENSMUSG00000031637	Lrp2bp	1700113N17Rik|2310006J04Rik|4930479L12Rik|MegBP	Lrp2 binding protein	protein-coding	2.885	0.816	0.593	2.537	3.235	1.309	3.061	5.522	2.908	2.478	2.369	2.026	5.543	5.983	6.319	6.592	4.817	4.945	1.978	1.289	0.618	2.873	1.085	0.877	5.612
10936	chr4	150203280	150207105	+	0	NA	Intergenic	Intergenic	-4057	NM_009802	12353	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	3.689	nan	0.391	3.462	2.488	1.512	3.098	3.884	3.500	5.089	1.766	1.366	4.583	7.166	3.714	4.849	2.455	4.290	2.310	0.590	0.545	2.060	0.729	0.608	4.752
6853	chr17	74310940	74314768	+	0	NA	intron (NM_001146224, intron 2 of 3)	B2_Mm2|SINE|B2	3357	NM_001146224	66310	Mm.28536	NM_024428	ENSMUSG00000024067	Dpy30	2810410M20Rik|C87842	dpy-30, histone methyltransferase complex regulatory subunit	protein-coding	3.460	1.233	0.592	5.703	1.890	0.598	nan	3.224	nan	2.640	2.921	1.388	2.953	3.152	2.734	3.604	1.948	5.485	0.735	0.666	0.204	1.491	0.454	0.248	2.356
9728	chr3	116363586	116366027	+	0	NA	intron (NM_001080818, intron 5 of 15)	ORR1D2|LTR|ERVL-MaLR	59226	NM_001080818	229776	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	6.398	8.629	2.537	8.241	3.626	1.586	6.451	5.533	5.593	10.969	6.707	4.502	6.914	6.493	7.698	8.501	5.197	9.235	4.433	1.921	2.359	5.652	2.134	3.028	nan
1878	chr10	128401786	128408977	+	0	NA	intron (NM_027257, intron 6 of 6)	B1F1|SINE|Alu	-4157	NM_001136237	72002	Mm.22983	NM_028051	ENSMUSG00000039878	Slc39a5	1810013D05Rik|2010205A06Rik|Zip5	solute carrier family 39 (metal ion transporter), member 5	protein-coding	3.531	nan	0.650	2.063	3.033	2.606	4.363	5.905	3.844	3.159	1.432	1.951	3.970	3.933	4.117	4.626	4.645	2.896	0.547	0.624	0.750	0.358	nan	0.487	2.476
15805	chrX	130810670	130813344	+	0	NA	Intergenic	Lx2|LINE|L1	1062265	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	2.753	3.102	1.329	2.054	2.399	1.400	3.284	3.868	2.635	2.793	2.394	1.869	2.921	3.264	3.287	3.645	2.620	3.056	3.813	1.909	1.428	2.567	1.369	1.952	2.492
14473	chr8	95719275	95724405	+	0	NA	intron (NM_001205226, intron 46 of 48)	intron (NM_001205226, intron 46 of 48)	5927	NM_001035123	66083	Mm.261321	NM_001035123	ENSMUSG00000031671	Setd6	0610039J04Rik|3110004G14Rik|AI413388|C76402	SET domain containing 6	protein-coding	6.285	0.264	0.253	4.404	1.544	0.692	4.290	9.748	2.876	4.722	1.416	1.441	9.133	6.193	4.411	8.565	7.832	6.028	3.025	2.295	1.356	2.973	4.846	2.807	6.642
7269	chr18	57939774	57941815	+	0	NA	intron (NM_009194, intron 24 of 26)	intron (NM_009194, intron 24 of 26)	62116	NM_009194	20496	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	7.231	nan	0.536	2.223	1.889	0.537	6.048	8.225	3.681	5.054	5.581	4.400	8.188	7.254	5.772	6.006	6.174	4.517	nan	1.083	0.531	1.881	1.112	0.469	4.326
5686	chr15	100994046	100997470	+	0	NA	intron (NM_001077499, intron 12 of 26)	L1_Mur3|LINE|L1	58641	NM_001214911	668225	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	5.555	1.614	0.727	3.703	5.637	2.832	9.735	14.391	5.037	5.474	7.578	4.980	7.270	6.729	7.676	6.925	6.685	6.598	4.909	2.866	1.170	2.732	5.053	3.830	7.624
2388	chr11	69808574	69811799	+	0	NA	Intergenic	PB1D10|SINE|Alu	-4562	NM_001033433	380705	Mm.490673	NM_001033433	ENSMUSG00000089876	Tmem102	4632403M07Rik|Cbap|Tmem102-ps	transmembrane protein 102	protein-coding	15.739	12.753	7.195	9.335	13.090	8.770	13.173	11.355	5.936	14.266	9.775	4.600	7.367	16.397	7.855	9.228	11.961	7.276	5.144	8.584	6.759	4.697	8.155	8.078	13.562
11195	chr5	37441255	37444169	+	0	NA	Intergenic	RMER1A|Other|Other	104234	NM_145920	68525	Mm.25506	NM_145920	ENSMUSG00000050248	Evc2	1110017L09Rik|Lbn|limbin	Ellis van Creveld syndrome 2	protein-coding	1.611	12.280	4.101	1.977	1.777	0.997	1.541	8.438	2.413	2.515	0.342	2.077	3.346	2.050	4.424	3.070	nan	2.173	7.454	4.831	2.640	5.393	8.703	4.747	2.334
12784	chr6	134758923	134761779	+	0	NA	intron (NM_001048054, intron 2 of 6)	intron (NM_001048054, intron 2 of 6)	32277	NM_130447	70686	Mm.491182	NM_130447	ENSMUSG00000030203	Dusp16	3830417M17Rik|AW558566|D6Ertd213e|MKP-7|MKP7|Mkpm	dual specificity phosphatase 16	protein-coding	2.428	0.964	0.720	2.416	6.454	6.745	5.876	3.607	3.782	3.026	4.006	2.007	2.989	6.248	nan	4.094	2.667	3.617	nan	2.103	2.114	1.471	1.900	1.678	1.962
11043	chr5	20558370	20563369	+	0	NA	intron (NM_001170746, intron 14 of 22)	MIRc|SINE|MIR	321255	NM_172992	68770	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	9.350	5.850	2.363	8.670	5.178	3.264	8.605	7.737	6.232	11.558	6.067	3.841	8.119	10.437	8.864	8.953	6.419	9.322	3.953	2.241	2.287	4.606	3.045	3.688	10.608
8144	chr2	32588131	32593323	+	0	NA	intron (NM_001276425, intron 3 of 5)	(ATTG)n|Simple_repeat|Simple_repeat	3649	NM_011373	20448	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	3.972	2.074	0.951	6.164	2.117	1.262	1.426	2.027	nan	2.707	1.417	0.786	0.962	2.399	1.802	2.729	1.542	3.599	0.785	1.507	0.840	0.837	0.903	0.515	3.032
10878	chr4	148005951	148008489	+	0	NA	intron (NM_011929, intron 22 of 22)	PB1D10|SINE|Alu	6498	NM_008725	230899	Mm.482123	NM_008725	ENSMUSG00000041616	Nppa	ANP|Anf|Pnd	natriuretic peptide type A	protein-coding	8.356	nan	0.735	3.283	7.973	7.542	11.982	6.815	3.497	3.969	0.663	1.718	7.762	11.843	6.557	4.803	5.034	6.136	0.939	1.265	2.056	1.089	2.229	2.572	6.628
10645	chr4	132945088	132958365	+	0	NA	Intergenic	PB1D9|SINE|Alu	-22369	NM_010208	14191	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	3.417	2.170	0.959	4.049	3.587	2.517	2.595	3.329	3.808	4.228	3.507	2.303	2.635	5.077	nan	3.039	1.578	3.825	1.464	1.516	1.321	2.661	0.772	0.793	4.098
8940	chr2	163315871	163320818	+	0	NA	intron (NM_001098799, intron 5 of 8)	intron (NM_001098799, intron 5 of 8)	79629	NM_021566	59091	Mm.34459	NM_021566	ENSMUSG00000017817	Jph2	1110002E14Rik|JP-2|Jp2	junctophilin 2	protein-coding	4.294	0.623	0.362	0.916	1.157	0.548	4.703	5.259	2.727	3.095	1.153	3.575	5.184	nan	3.918	7.535	4.760	nan	9.643	4.339	3.400	7.703	7.410	5.814	5.947
1690	chr10	99019050	99020393	+	0	NA	intron (NM_026482, intron 20 of 20)	intron (NM_026482, intron 20 of 20)	-87450	NM_027740	382406	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	2.041	0.789	0.366	0.400	1.288	0.504	0.747	1.970	0.738	0.649	nan	0.954	0.590	0.927	1.429	0.973	1.048	1.483	3.786	4.049	4.113	nan	6.016	4.647	0.655
2964	chr11	113470597	113474638	+	0	NA	intron (NM_001166503, intron 4 of 9)	intron (NM_001166503, intron 4 of 9)	93198	NM_001166503	69806	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	5.789	nan	0.821	1.988	1.470	1.124	3.051	4.447	1.617	5.036	1.102	1.907	8.354	5.797	5.873	6.440	7.308	3.734	1.435	nan	1.390	1.228	4.196	2.673	5.016
8224	chr2	44779068	44780865	+	0	NA	intron (NM_172662, intron 3 of 10)	LTRIS3|LTR|ERV1	81656	NM_172662	227835	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	3.554	6.996	5.100	3.785	1.968	0.951	1.059	1.422	3.010	2.389	1.158	1.148	0.971	2.153	1.544	1.764	2.200	3.092	1.542	2.262	0.816	0.809	1.547	0.737	1.225
7090	chr18	25852012	25855169	+	0	NA	Intergenic	Intergenic	-99607	NM_001174074	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	2.155	0.621	0.209	1.264	0.739	0.506	7.625	10.320	3.559	3.693	0.585	0.759	5.014	4.361	5.217	3.887	3.060	4.206	5.456	1.062	0.692	nan	3.345	2.530	3.676
15639	chr9	123404437	123409354	+	0	NA	intron (NM_153168, intron 5 of 20)	L1Md_F2|LINE|L1	39955	NM_153168	102436	Mm.276076	NM_153168	ENSMUSG00000035202	Lars2	AI035546|Kiaa0028|LEURS	leucyl-tRNA synthetase, mitochondrial	protein-coding	4.723	1.395	1.423	2.429	nan	1.633	4.669	5.296	nan	2.758	1.158	1.438	3.048	2.836	5.189	6.215	5.263	3.715	1.758	1.080	1.380	1.268	2.280	2.226	5.953
13471	chr7	105963191	105966612	+	0	NA	Intergenic	L1Md_T|LINE|L1	-10931	NM_029000	74558	Mm.458429	NM_029000	ENSMUSG00000045868	Gvin1	9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1	GTPase, very large interferon inducible 1	protein-coding	4.280	6.686	2.422	5.494	2.649	1.201	4.380	5.872	2.622	4.383	4.164	2.365	6.033	7.331	5.615	6.303	4.458	4.158	nan	2.117	1.810	4.765	2.356	1.537	6.753
617	chr1	134188041	134192655	+	0	NA	TTS (NM_007695)	TTS (NM_007695)	-3100	NM_016749	53311	Mm.379067	NM_016749	ENSMUSG00000042451	Mybph	AI385643|MyBP-H	myosin binding protein H	protein-coding	8.324	1.478	0.668	nan	5.734	4.928	5.238	3.264	3.153	4.019	8.761	2.086	4.649	6.090	4.087	6.019	2.766	4.863	1.443	1.091	1.169	1.081	1.712	1.681	nan
8840	chr2	154019053	154020346	+	0	NA	Intergenic	L1_Mus1|LINE|L1	11423	NM_008953	19194	Mm.29197	NM_008953	ENSMUSG00000042459	Bpifa2	Bpifa2e|Psp	BPI fold containing family A, member 2	protein-coding	2.834	0.936	0.542	2.438	2.474	0.949	3.937	4.135	3.325	2.453	6.488	2.129	3.039	3.551	2.884	5.932	3.197	4.014	nan	0.870	0.659	0.397	1.025	0.367	3.624
3943	chr13	34153030	34156154	+	0	NA	Intergenic	Intergenic	-8372	NM_001101430	69666	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	2.393	nan	0.668	1.549	0.977	0.660	2.474	4.463	nan	1.858	0.716	0.479	2.597	4.577	3.168	3.754	2.949	3.044	1.120	0.758	0.549	1.541	0.709	0.371	5.056
10850	chr4	144536340	144542413	+	0	NA	Intergenic	L1_Mus3|LINE|L1	19554	NM_198662	381572	Mm.184290	NM_198662	ENSMUSG00000028593	9430007A20Rik	Aadacl4|Gm1034	RIKEN cDNA 9430007A20 gene	protein-coding	3.748	nan	0.717	5.492	3.979	1.986	3.260	6.296	4.959	6.598	5.185	2.841	3.732	6.499	3.956	6.688	2.712	5.015	1.239	0.987	0.693	2.085	1.079	1.187	5.537
6932	chr17	85455475	85457196	+	0	NA	intron (NM_028576, intron 10 of 10)	intron (NM_028576, intron 10 of 10)	162061	NR_038084	100043902	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	1.123	0.598	0.570	1.872	1.746	0.752	5.537	3.380	2.175	2.678	0.731	0.533	3.711	4.463	4.804	3.558	2.280	2.027	2.148	2.024	1.197	2.795	1.723	2.370	2.361
5244	chr15	61438104	61444770	+	0	NA	Intergenic	Intergenic	333014	NR_040350	432956	Mm.404918	NR_040350		D030024E09Rik	-	RIKEN cDNA D030024E09 gene	ncRNA	5.340	1.062	0.605	nan	2.580	1.141	nan	6.925	4.560	nan	6.765	3.711	5.032	4.211	3.944	4.176	4.012	6.101	0.723	0.529	0.506	0.665	0.584	0.351	2.562
8470	chr2	101632536	101638627	+	0	NA	Intergenic	Intergenic	-6595	NM_026592	68170	Mm.31263	NM_026592	ENSMUSG00000027165	B230118H07Rik	NWC	RIKEN cDNA B230118H07 gene	protein-coding	6.097	2.010	0.838	4.007	2.495	1.019	7.852	4.548	2.648	3.556	1.536	0.470	7.956	6.474	7.045	7.707	7.180	7.148	0.691	0.739	0.493	0.510	0.643	0.471	7.282
4061	chr13	45625922	45628676	+	0	NA	intron (NM_001199304, intron 5 of 6)	intron (NM_001199304, intron 5 of 6)	119855	NM_025508	66355	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	3.150	0.567	0.328	nan	4.552	1.789	3.000	2.223	1.602	2.843	0.988	0.509	2.916	6.767	4.147	5.127	3.807	3.588	0.535	nan	0.372	0.475	0.730	0.489	6.266
8206	chr2	37306745	37308613	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-24070	NM_146374	258371	Mm.223061	NM_146374	ENSMUSG00000049018	Olfr368	MOR178-1	olfactory receptor 368	protein-coding	9.159	6.422	2.441	7.682	6.028	3.678	8.294	10.336	5.080	7.714	4.634	3.112	7.134	7.993	8.042	10.899	8.507	7.623	4.599	3.353	2.782	5.113	4.272	4.303	11.809
7727	chr19	34681191	34683315	+	0	NA	intron (NM_172838, intron 2 of 6)	intron (NM_172838, intron 2 of 6)	41364	NM_008331	15957	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	nan	5.944	3.553	5.717	4.885	3.179	3.618	3.394	5.410	5.226	5.001	2.732	3.101	3.602	3.224	3.932	4.371	2.979	0.716	1.684	0.998	0.421	0.612	0.574	2.119
7515	chr19	7052823	7055756	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	-2479	NM_134147	107227	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding	7.302	10.616	3.750	7.238	4.038	2.144	7.735	9.354	4.299	8.660	6.064	3.136	4.943	8.741	7.708	9.481	7.627	7.247	2.320	2.443	4.102	5.440	3.910	3.741	12.085
2918	chr11	106991025	106993921	+	0	NA	intron (NM_010655, intron 4 of 10)	(CA)n|Simple_repeat|Simple_repeat	7052	NM_010655	16647	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	7.949	12.913	7.149	8.038	5.912	5.766	6.645	7.310	4.610	14.527	7.817	4.852	6.072	8.463	7.491	8.801	6.610	7.998	5.059	4.072	5.199	4.816	4.534	6.467	10.418
5704	chr15	101600105	101603129	+	0	NA	Intergenic	Intergenic	-7257	NR_002869	432986	Mm.491079	NR_002869		Gm5477	EG432986|Kb16p	type II keratin Kb16P	pseudo	0.573	0.892	0.298	0.385	0.400	0.040	0.838	1.188	0.348	0.304	7.726	1.673	0.539	0.442	0.636	nan	0.686	0.526	0.954	0.607	0.365	1.168	1.498	0.582	0.809
3821	chr13	5602240	5605473	+	0	NA	Intergenic	Intergenic	254236	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	8.897	2.511	1.128	8.104	9.745	4.438	2.097	6.656	6.387	6.717	4.564	2.086	3.539	9.087	3.053	3.075	2.542	7.257	1.302	1.723	0.510	1.166	1.170	0.826	1.822
15270	chr9	70736079	70741632	+	0	NA	intron (NM_007399, intron 4 of 15)	(TTCC)n|Simple_repeat|Simple_repeat	59873	NM_007399	11487	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	3.802	2.728	0.854	2.467	3.210	1.457	2.206	3.721	4.174	4.498	5.206	4.856	2.172	3.015	nan	2.613	1.451	4.032	5.053	2.870	2.118	6.213	5.174	3.095	2.816
14029	chr8	12770464	12778065	+	0	NA	intron (NR_121603, intron 1 of 29)	intron (NR_121603, intron 1 of 29)	17248	NM_001293667	50770	Mm.257837	NM_015804	ENSMUSG00000031441	Atp11a	4930558F19Rik|AU040868|Atpc1h|Ih	ATPase, class VI, type 11A	protein-coding	4.692	1.358	0.602	5.475	5.156	3.830	2.825	6.452	4.153	5.084	1.195	1.156	5.299	6.608	5.770	7.651	4.106	8.132	1.531	1.547	1.126	2.643	1.094	0.604	7.873
6447	chr17	27192269	27198207	+	0	NA	intron (NM_146075, intron 5 of 8)	intron (NM_146075, intron 5 of 8)	9200	NM_146075	224640	Mm.29689	NM_146075	ENSMUSG00000044857	Lemd2	BC026588|Lem2|NET25	LEM domain containing 2	protein-coding	5.628	8.341	3.712	6.049	3.509	2.171	11.025	7.564	4.432	6.750	5.943	4.512	6.209	9.162	8.282	9.941	6.852	6.244	1.410	1.661	1.362	1.377	1.035	0.954	9.370
8254	chr2	58379197	58388218	+	0	NA	Intergenic	Lx6|LINE|L1	-25949	NM_001111030	269275	Mm.77751	NM_001033369	ENSMUSG00000026834	Acvr1c	ACTR-IC|ACVRLK7|ALK7|Alk-7|C230097P10	activin A receptor, type IC	protein-coding	1.827	0.929	0.677	1.975	0.976	0.383	1.505	4.087	1.849	1.894	0.957	0.843	1.997	1.932	2.300	3.250	2.812	2.463	5.718	3.759	2.238	6.693	3.634	2.390	2.464
9823	chr3	135332305	135339195	+	0	NA	intron (NM_178877, intron 11 of 12)	intron (NM_178877, intron 11 of 12)	-12287	NM_028946	74446	Mm.85000	NM_028946	ENSMUSG00000050150	Slc9b1	1700094G20Rik|4933424B12Rik|4933425K02Rik|Nhedc1|mtsNHE	solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1	protein-coding	3.782	nan	0.812	3.319	2.810	1.594	4.940	4.322	3.354	4.813	6.815	2.813	4.986	5.569	5.647	4.053	3.189	5.103	1.029	0.812	0.704	1.424	0.713	0.487	2.501
14390	chr8	85506385	85508530	+	0	NA	intron (NM_173866, intron 4 of 11)	B1_Mus1|SINE|Alu	14840	NM_173866	108682	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	7.901	0.724	0.819	2.628	4.441	1.458	3.484	4.835	4.737	6.806	2.144	0.954	7.426	8.213	5.162	5.929	5.574	6.172	2.404	4.326	2.748	4.093	1.526	0.996	4.263
11832	chr5	137084087	137086010	+	0	NA	Intergenic	Intergenic	-12776	NM_008871	18787	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	3.231	0.845	0.826	2.340	2.873	1.097	3.815	2.746	2.831	2.417	3.123	1.535	2.688	4.259	3.504	4.717	3.290	3.269	0.445	0.560	0.829	0.298	nan	0.491	4.002
15436	chr9	102590610	102593459	+	0	NA	intron (NM_001081122, intron 14 of 16)	intron (NM_001081122, intron 14 of 16)	34090	NM_001301689	28135	Mm.38910	NM_001081122	ENSMUSG00000032534	Cep63	4921501M07|AL450317.13gm1|AW107703|CD20R|D9Mgc41|D9Mgc48e|ET2	centrosomal protein 63	protein-coding	3.182	0.637	0.484	3.675	1.266	0.476	1.809	2.820	2.344	4.125	0.851	0.636	1.688	2.908	3.120	3.547	2.997	3.956	7.514	4.598	3.814	6.672	9.168	6.851	8.199
8775	chr2	147828957	147835317	+	0	NA	Intergenic	Intergenic	121444	NR_046014	381384	Mm.259809	NR_046014	ENSMUSG00000051986	A530006G24Rik	Gm1003	RIKEN cDNA A530006G24 gene	ncRNA	7.099	0.462	0.290	2.371	4.605	2.274	7.810	6.015	5.348	5.494	0.800	2.194	5.701	6.816	5.493	6.588	6.325	7.824	nan	1.874	0.914	1.663	2.736	1.808	7.584
6435	chr17	26727302	26735175	+	0	NA	intron (NM_029870, intron 1 of 8)	intron (NM_029870, intron 1 of 8)	15588	NM_029870	77128	Mm.275414	NM_029870	ENSMUSG00000048249	Crebrf	A930001N09Rik|LRF	CREB3 regulatory factor	protein-coding	4.954	2.455	0.808	4.756	4.757	2.494	2.174	6.128	3.606	3.071	2.655	1.547	2.799	5.826	2.753	nan	1.488	3.375	1.906	1.783	1.026	3.132	1.142	0.672	3.435
2267	chr11	59958934	59963080	+	0	NA	3' UTR (NM_138675, exon 2 of 2)	3' UTR (NM_138675, exon 2 of 2)	3937	NM_009026	19416	Mm.3903	NM_009026	ENSMUSG00000049892	Rasd1	Dexras1	RAS, dexamethasone-induced 1	protein-coding	1.939	1.062	0.379	2.412	0.992	0.823	2.813	3.743	1.928	2.072	0.752	0.801	3.210	3.827	3.898	5.055	2.815	3.417	nan	1.077	0.618	2.221	1.250	0.665	3.294
2537	chr11	80283289	80295454	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	-11541	NM_139228	246104	Mm.194148	NM_139228	ENSMUSG00000017692	Rhbdl3	AI847581|Rhbdl4|Rhomr1|Vrho	rhomboid, veinlet-like 3 (Drosophila)	protein-coding	nan	1.988	0.899	1.303	0.559	0.283	nan	0.747	0.929	1.243	0.448	0.361	0.601	nan	nan	nan	0.892	nan	6.580	3.506	nan	5.966	4.685	3.793	1.826
12087	chr6	23073474	23077786	+	0	NA	intron (NM_013930, intron 21 of 23)	intron (NM_013930, intron 21 of 23)	57356	NM_013930	30956	Mm.18651	NM_013930	ENSMUSG00000029695	Aass	LKR|LKR/SDH|LOR|LOR/SDH|Lorsdh|SDH	aminoadipate-semialdehyde synthase	protein-coding	4.077	0.333	0.325	0.667	0.348	0.304	2.279	3.352	1.575	1.476	0.642	0.562	3.704	1.698	3.094	4.006	6.994	nan	nan	0.809	0.379	0.415	0.428	0.318	3.211
887	chr1	173366375	173378899	+	0	NA	Intergenic	L2c|LINE|L2	-4942	NM_053199	94332	Mm.330524	NM_053199	ENSMUSG00000005338	Cadm3	BIgR|Igsf4b|Necl-1|Necl1|SynCAM3|Tsll1	cell adhesion molecule 3	protein-coding	9.939	1.655	1.052	5.376	6.329	4.660	7.286	6.439	4.480	5.057	4.127	3.090	6.703	8.320	6.069	9.431	6.947	6.730	3.543	4.254	3.435	3.450	3.532	2.743	6.820
12767	chr6	134192962	134194038	+	0	NA	intron (NM_001303102, intron 3 of 8)	AT_rich|Low_complexity|Low_complexity	157800	NM_007961	14011	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	5.163	4.127	1.863	5.230	3.150	1.293	3.034	8.537	3.656	2.817	2.760	1.444	1.834	5.079	4.417	5.421	5.411	4.353	nan	1.599	1.095	1.538	0.796	0.262	5.421
72	chr1	33702457	33705933	+	0	NA	Intergenic	L1MA4A|LINE|L1	-15701	NM_008999	19335	Mm.86744	NM_008999	ENSMUSG00000004768	Rab23	AW545388|opb|opb2	RAB23, member RAS oncogene family	protein-coding	2.324	0.761	0.554	2.053	4.532	2.774	0.950	1.377	2.317	2.064	0.618	0.793	1.996	4.393	1.065	nan	1.082	1.888	0.595	0.707	1.003	0.416	0.753	0.701	1.028
3371	chr12	61353681	61357656	+	0	NA	Intergenic	L1Md_F2|LINE|L1	166152	NR_045049	100504101	Mm.235026	NR_045049		Gm20063	-	predicted gene, 20063	ncRNA	3.946	nan	0.403	1.603	1.878	0.773	5.924	3.941	2.940	1.526	1.869	2.102	3.476	3.906	nan	4.922	6.366	3.860	0.658	0.573	0.389	0.196	0.353	0.237	2.232
7812	chr19	45686668	45697113	+	0	NA	Intergenic	Intergenic	-31697	NM_013907	30838	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	2.470	0.745	0.374	nan	1.906	1.084	1.408	1.346	2.802	4.349	0.664	0.598	5.244	6.063	3.268	7.146	7.557	nan	0.356	0.569	0.272	0.583	0.494	0.365	9.695
13930	chr7	150985137	150987968	+	0	NA	Intergenic	Intergenic	5671717	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	nan	nan	0.462	nan	0.535	0.264	1.182	3.059	nan	1.225	6.679	2.586	1.695	1.513	1.029	0.920	0.326	1.369	1.417	0.466	0.087	1.958	nan	0.939	nan
1682	chr10	98690760	98691979	+	0	NA	Intergenic	Intergenic	-223783	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	5.557	1.740	0.405	5.019	2.682	1.167	2.465	4.466	3.058	4.226	2.293	1.367	2.085	4.001	3.902	5.149	3.192	4.263	nan	1.071	1.643	2.752	3.548	2.333	4.985
2781	chr11	100479762	100481604	+	0	NA	intron (NM_001199296, intron 25 of 28)	B2_Mm1t|SINE|B2	-2203	NR_130343	102465671		NR_130343	ENSMUSG00000104854	Mir7116	mmu-mir-7116	microRNA 7116	ncRNA	8.243	14.029	3.851	9.451	3.857	1.586	5.815	5.827	4.355	6.981	5.958	3.344	4.725	7.337	7.597	9.407	4.005	8.143	4.990	2.815	2.455	5.980	3.936	nan	12.374
13025	chr7	26428551	26431151	+	0	NA	Intergenic	Intergenic	-5262	NM_172896	243880	Mm.322356	NM_172896	ENSMUSG00000040601	Nlrp4a	E330021B02|E330028A19Rik|NALP4|Nalp-eta|Nalp-ita|Nalp4a	NLR family, pyrin domain containing 4A	protein-coding	1.582	2.373	1.263	1.182	0.581	0.336	0.840	0.946	0.938	0.894	7.413	2.039	0.578	0.825	1.093	1.168	0.805	1.193	0.771	0.861	0.594	0.833	0.425	0.416	1.434
15109	chr9	56918597	56927942	+	0	NA	intron (NM_175483, intron 1 of 1)	intron (NM_175483, intron 1 of 1)	5102	NM_175483	235406	Mm.191459	NM_175483	ENSMUSG00000032733	Snx33	E130307J07Rik|Sh3px3	sorting nexin 33	protein-coding	6.634	7.679	2.749	6.515	2.384	1.603	5.515	6.126	3.739	6.968	4.362	3.128	5.481	7.638	7.066	8.667	4.829	5.749	3.826	1.940	2.112	4.083	2.156	2.476	10.728
8479	chr2	101980925	101987763	+	0	NA	intron (NM_001290784, intron 4 of 5)	RMER5|LTR|ERV1	98082	NM_029635	76501	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	4.708	0.762	0.356	3.496	1.935	1.232	3.654	6.644	4.173	4.251	0.501	0.772	6.229	6.028	4.554	6.934	5.632	6.107	0.735	0.949	0.608	0.993	0.629	0.637	5.789
12649	chr6	118912511	118914736	+	0	NA	intron (NM_001256002, intron 3 of 47)	intron (NM_001256002, intron 3 of 47)	33465	NR_046053	74363	Mm.399403	NR_046053		4931430N09Rik	-	RIKEN cDNA 4931430N09 gene	ncRNA	3.779	0.966	0.234	3.739	2.898	0.921	4.578	4.500	4.035	4.691	1.462	0.317	7.689	6.429	5.654	9.893	4.154	6.512	0.767	0.591	0.386	1.048	nan	0.412	6.868
9376	chr3	68777217	68781399	+	0	NA	Intergenic	Intergenic	87884	NM_008351	16159	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	6.141	3.317	1.511	1.942	3.483	1.477	7.339	3.090	3.573	3.599	2.004	0.997	7.276	6.046	3.434	4.248	5.736	4.840	1.170	1.280	1.089	0.699	1.319	0.890	4.334
7672	chr19	26819114	26831386	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-1343	NR_045306	70942	Mm.411548	NR_045306	ENSMUSG00000093772	4931403E22Rik	-	RIKEN cDNA 4931403E22 gene	ncRNA	8.126	3.913	2.203	5.052	6.236	3.566	8.070	7.623	5.435	6.907	nan	2.992	7.295	8.884	6.601	9.023	11.312	9.149	nan	1.209	0.979	0.947	nan	0.749	10.129
15569	chr9	118607892	118611823	+	0	NA	intron (NM_133721, intron 1 of 27)	intron (NM_133721, intron 1 of 27)	3148	NM_133721	104099	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	5.504	1.039	0.264	5.629	2.547	0.982	3.613	3.996	6.278	8.057	3.534	1.451	6.790	9.853	6.433	9.144	3.853	9.613	1.602	1.094	0.624	1.686	nan	0.485	10.422
10196	chr4	73955457	73960573	+	0	NA	Intergenic	L1_Mus4|LINE|L1	-7169	NM_027104	71886	Mm.158769	NM_027104	ENSMUSG00000028396	2310002L09Rik	2310003M01Rik|AV083437	RIKEN cDNA 2310002L09 gene	protein-coding	0.810	5.059	6.906	0.500	0.530	0.397	0.607	0.538	0.594	0.528	0.631	0.448	0.353	0.573	0.356	0.493	0.663	0.566	nan	1.489	0.887	0.663	0.763	0.767	0.323
15828	chrX	138897180	138900637	+	0	NA	Intergenic	Lx3A|LINE|L1	-15522	NM_013724	27206	Mm.482319	NM_013724	ENSMUSG00000052854	Nrk	AA407323|AA409510|AI225895|AV168563|AW538185|Nesk	Nik related kinase	protein-coding	3.420	0.184	0.191	2.118	3.821	2.680	4.654	6.640	3.509	4.340	2.991	1.312	4.176	4.996	3.944	4.340	3.806	3.481	0.789	0.672	0.512	0.528	0.630	0.426	3.523
8234	chr2	49394866	49398957	+	0	NA	Intergenic	Cheshire|DNA|hAT-Charlie	-54575	NM_172663	227867	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2 (Drosophila)	protein-coding	5.049	0.741	0.915	1.688	0.809	0.322	3.596	2.430	3.980	nan	1.241	0.789	7.399	3.196	3.137	6.091	7.038	5.414	0.704	0.691	0.315	0.478	0.727	0.294	3.608
11815	chr5	136735016	136739124	+	0	NA	Intergenic	MLTR14|LTR|ERV1	42893	NM_001085387	59310	Mm.5178	NM_021611	ENSMUSG00000005474	Myl10	1700027I08Rik|Mylc2pl|PLRLC	myosin, light chain 10, regulatory	protein-coding	1.551	1.122	0.583	1.557	2.020	1.295	2.501	5.080	1.765	2.413	0.744	0.590	1.606	4.347	2.693	2.519	1.460	2.161	0.298	0.499	0.151	0.478	nan	0.248	1.837
2257	chr11	59520256	59522235	+	0	NA	Intergenic	Intergenic	-14605	NM_172941	268417	Mm.239793	NM_172941	ENSMUSG00000020472	Zkscan17	Nizp1|Zfp496|Znf496	zinc finger with KRAB and SCAN domains 17	protein-coding	3.349	1.299	0.553	4.911	1.280	0.882	1.643	1.473	2.398	2.560	1.930	1.275	1.231	2.072	2.062	1.847	1.138	2.816	nan	1.512	0.852	2.166	0.899	0.654	2.317
9696	chr3	108278144	108281809	+	0	NA	TTS (NM_011967)	TTS (NM_011967)	-4088	NM_001271599	20661	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	6.015	0.604	0.696	2.405	1.962	1.859	10.467	5.977	5.126	4.702	4.707	4.061	11.855	7.340	5.750	6.729	9.648	5.769	2.170	2.584	2.420	2.975	5.166	6.196	5.758
13357	chr7	87161331	87164821	+	0	NA	Intergenic	Lx3_Mus|LINE|L1	-83573	NM_001285835	50490	Mm.31748	NM_015760	ENSMUSG00000030562	Nox4	AI648021	NADPH oxidase 4	protein-coding	2.845	7.655	8.142	2.418	2.639	2.826	1.461	2.283	1.918	1.924	1.657	1.676	1.376	1.646	1.346	1.424	2.125	nan	0.883	1.479	2.626	nan	0.919	1.491	nan
13197	chr7	52967456	52988011	+	0	NA	Intergenic	Intergenic	914156	NR_105746	102466619		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	4.577	3.359	1.124	3.392	2.161	1.169	6.304	10.908	2.851	3.594	3.173	2.174	5.956	7.198	6.526	6.660	4.701	6.003	2.390	1.182	0.949	2.228	1.955	1.335	8.629
3973	chr13	36813071	36824426	+	0	NA	Intergenic	Intergenic	-84271	NM_153529	68404	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	2.154	nan	0.619	1.465	2.930	1.692	nan	nan	nan	nan	0.337	1.741	2.690	7.584	1.625	nan	4.708	nan	0.465	0.421	0.309	0.375	0.319	0.234	nan
6454	chr17	27701575	27703232	+	0	NA	intron (NM_011861, intron 2 of 9)	intron (NM_011861, intron 2 of 9)	17164	NM_178365	23969	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	4.452	11.500	2.486	6.917	2.078	1.523	4.765	4.991	2.630	5.607	4.048	2.508	3.371	4.578	7.158	7.997	2.516	5.397	4.891	1.979	2.017	6.685	2.091	2.353	11.293
2444	chr11	74314708	74317787	+	0	NA	Intergenic	ID_B1|SINE|B4	18982	NM_146707	258702	Mm.377643	NM_146707	ENSMUSG00000063116	Olfr410	MOR255-5	olfactory receptor 410	protein-coding	nan	1.476	0.809	1.143	0.722	0.242	nan	3.869	0.681	0.796	1.496	1.464	0.980	nan	nan	nan	1.184	nan	3.492	5.494	nan	6.107	6.212	4.002	1.193
13203	chr7	53702568	53705521	+	0	NA	Intergenic	Intergenic	187845	NR_105746	102466619		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	nan	0.777	0.565	0.544	0.265	0.083	0.299	0.271	0.372	0.334	0.224	0.080	0.231	0.328	0.393	nan	0.267	0.571	2.572	1.572	1.673	4.810	1.993	1.612	0.979
8623	chr2	124978988	124982251	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-87508	NM_175034	317750	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	3.180	0.668	0.342	2.665	1.376	0.679	3.265	1.684	2.881	3.138	0.357	0.375	4.064	7.232	4.359	4.842	5.803	3.106	nan	0.534	0.529	0.596	0.947	0.351	4.306
725	chr1	145847745	145852243	+	0	NA	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-645672	NM_153539	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	4.425	4.801	2.160	3.817	1.560	0.839	2.901	4.604	2.804	2.861	2.400	2.764	1.973	2.939	3.092	2.922	2.015	2.876	5.160	3.746	2.138	3.891	6.305	4.151	2.513
3921	chr13	30758310	30760007	+	0	NA	intron (NM_001347508, intron 7 of 8)	L1MA8|LINE|L1	9925	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	1.308	1.248	1.195	1.511	0.447	0.130	0.704	2.238	0.539	1.097	0.249	0.504	5.026	3.212	1.263	3.072	1.327	1.641	0.697	0.590	0.439	0.888	0.547	0.544	2.449
4088	chr13	47297030	47298239	+	0	NA	Intergenic	Intergenic	103631	NM_001170643	218215	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	6.515	0.774	0.666	6.173	6.089	3.040	1.620	4.107	3.010	3.646	1.550	1.153	3.462	4.785	3.469	5.670	3.125	5.014	0.656	nan	1.097	0.638	0.773	0.308	6.785
4290	chr13	95067245	95069155	+	0	NA	intron (NM_001170669, intron 7 of 18)	intron (NM_001170669, intron 7 of 18)	91856	NM_172590	218460	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	3.612	0.835	0.570	2.359	6.033	5.295	4.282	4.753	3.768	4.053	0.959	1.098	5.339	5.604	3.150	3.645	3.171	2.834	0.952	1.391	1.107	1.460	0.983	1.272	3.373
12301	chr6	70797008	70798167	+	0	NA	Intergenic	Intergenic	-5412	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	5.202	5.910	2.573	3.136	2.629	0.958	5.485	7.493	2.874	3.590	4.350	3.060	5.101	4.908	5.540	6.973	4.038	4.937	1.885	2.191	0.872	1.165	1.738	0.873	3.638
10720	chr4	135693650	135705555	+	0	NA	intron (NM_174851, intron 3 of 6)	(C)n|Simple_repeat|Simple_repeat	13145	NM_174851	242700	Mm.259623	NM_174851	ENSMUSG00000062157	Ifnlr1	CRF2-12|Il28ra	interferon lambda receptor 1	protein-coding	4.791	6.368	2.322	8.929	3.269	2.162	7.423	4.280	nan	5.697	4.966	3.307	5.865	9.797	7.672	8.290	3.280	nan	5.541	3.712	3.335	7.518	nan	6.525	4.856
10440	chr4	118833341	118834544	+	0	NA	Intergenic	L1_Mus2|LINE|L1	-3504	NM_207157	258265	Mm.482029	NM_207157	ENSMUSG00000110947	Olfr1333	GA_x5J8B7TQTH0-2-774|MOR259-11|MOR259-6	olfactory receptor 1333	protein-coding	2.867	0.550	0.757	0.742	1.405	0.838	2.638	3.535	1.238	1.112	1.163	0.975	1.851	4.074	2.653	1.388	0.793	2.554	0.887	0.773	0.630	0.582	0.366	0.281	1.111
5754	chr16	4739964	4743396	+	0	NA	promoter-TSS (NM_010443)	promoter-TSS (NM_010443)	67	NM_010443	15369	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	7.486	1.504	1.025	3.358	7.762	4.500	nan	3.844	4.743	6.238	1.691	1.240	6.093	6.209	4.041	6.007	6.503	6.488	1.013	0.844	0.791	0.827	1.048	0.694	5.931
5348	chr15	75927026	75928927	+	0	NA	intron (NM_031201, intron 3 of 10)	intron (NM_031201, intron 3 of 10)	1754	NM_031201	22122	Mm.22596	NM_031201	ENSMUSG00000022570	Tsta3	AI256181|FX|Tstap35b	tissue specific transplantation antigen P35B	protein-coding	5.016	nan	0.241	2.309	2.080	0.721	5.554	9.348	2.675	3.431	nan	0.879	5.354	4.233	4.206	4.717	4.849	3.338	2.131	1.819	0.754	nan	1.502	0.853	5.103
3252	chr12	28023159	28027336	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	523090	NM_001177964	68511	Mm.310284	NM_001177964	ENSMUSG00000020633	Dcdc2c	1110015M06Rik	doublecortin domain containing 2C	protein-coding	0.316	0.342	0.373	1.191	0.228	0.164	1.880	0.436	0.253	0.418	0.329	0.097	0.369	0.353	0.419	0.404	0.412	0.583	7.177	2.581	2.897	5.884	3.138	3.919	0.740
13084	chr7	30251348	30258324	+	0	NA	intron (NM_146186, intron 13 of 32)	intron (NM_146186, intron 13 of 32)	-18071	NM_001289817	381867	Mm.483986	NM_001289817	ENSMUSG00000100512	Ovol3	Gm1903|movo3	ovo like zinc finger 3	protein-coding	3.449	0.640	0.430	3.392	2.316	1.301	4.839	6.852	3.275	3.639	3.216	2.166	4.847	5.248	5.482	5.439	3.329	5.399	2.150	1.130	1.130	2.743	1.376	1.019	5.818
11449	chr5	93305841	93320840	+	0	NA	Intergenic	L1Md_T|LINE|L1	45767	NM_007635	12452	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	3.977	0.531	0.335	3.028	3.829	2.111	4.953	4.338	3.848	3.730	2.879	2.053	5.564	6.652	5.121	5.263	3.895	4.623	1.168	0.942	0.666	0.828	1.180	0.922	4.215
13026	chr7	26465093	26469549	+	0	NA	intron (NM_172896, intron 10 of 10)	ERVB4_2-I_MM-int|LTR|ERVK	32208	NM_172896	243880	Mm.322356	NM_172896	ENSMUSG00000040601	Nlrp4a	E330021B02|E330028A19Rik|NALP4|Nalp-eta|Nalp-ita|Nalp4a	NLR family, pyrin domain containing 4A	protein-coding	5.450	13.227	5.522	4.432	2.261	1.159	4.260	3.571	2.507	3.247	3.432	1.190	2.880	4.513	4.590	4.394	2.901	3.860	2.404	2.582	1.817	3.226	1.644	1.110	5.310
12815	chr6	137834399	137836006	+	0	NA	intron (NM_172733, intron 7 of 8)	MTA_Mm-int|LTR|ERVL-MaLR	80625	NM_172733	232449	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	4.581	0.587	0.328	1.501	0.671	0.327	6.231	4.744	2.996	3.165	2.752	0.961	7.395	5.006	6.039	7.765	5.874	4.807	nan	0.390	0.076	0.705	0.562	0.443	4.784
4048	chr13	43901601	43903574	+	0	NA	Intergenic	Intergenic	117475	NM_001289915	12522	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	2.678	2.342	1.501	nan	0.970	0.209	1.385	3.100	2.309	3.541	0.903	0.331	3.098	4.666	2.938	4.137	2.436	2.442	0.625	nan	0.274	1.845	0.970	0.592	2.515
5429	chr15	79499314	79501645	+	0	NA	intron (NM_008427, intron 1 of 1)	intron (NM_008427, intron 1 of 1)	4762	NM_008427	16520	Mm.39759	NM_008427	ENSMUSG00000044216	Kcnj4	IRK3|Kcnf2|MB-IRK3	potassium inwardly-rectifying channel, subfamily J, member 4	protein-coding	5.874	3.160	1.806	4.584	4.965	5.075	9.350	7.312	3.787	4.202	nan	2.525	6.932	7.868	5.715	6.328	8.993	4.770	1.618	1.867	2.961	nan	3.027	3.065	5.721
4183	chr13	58502168	58505327	+	0	NA	Intergenic	Intergenic	-100404	NM_001301341	15387	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	12.045	21.010	5.606	15.300	7.873	6.440	10.543	8.814	8.110	19.070	11.335	5.544	9.696	12.420	11.170	12.983	6.318	12.152	8.378	3.976	6.130	9.390	6.098	9.962	21.769
15275	chr9	71506493	71509436	+	0	NA	intron (NM_001033208, intron 12 of 12)	intron (NM_001033208, intron 12 of 12)	-21981	NM_178602	28015	Mm.21094	NM_178602	ENSMUSG00000032199	Polr2m	AA407243|AA408799|AI303746|AW553238|D9Wsu138e|Grinl1a|mKIAA4185	polymerase (RNA) II (DNA directed) polypeptide M	protein-coding	4.852	0.684	0.477	2.692	2.771	1.651	3.633	4.325	3.815	4.270	1.971	1.967	3.499	6.967	3.709	5.234	3.347	4.550	nan	2.298	1.769	2.910	2.604	2.206	5.195
12638	chr6	117984691	117987679	+	0	NA	Intergenic	Intergenic	-25352	NM_001316749	70727	Mm.87660	NM_027526	ENSMUSG00000030134	Rasgef1a	6330404M18Rik|AI835194	RasGEF domain family, member 1A	protein-coding	3.736	0.880	0.484	5.713	2.573	0.790	3.058	3.205	2.080	2.355	0.839	0.605	2.957	4.909	5.506	7.691	2.286	5.550	1.040	0.817	0.231	1.132	nan	0.546	7.814
11440	chr5	92913459	92937275	+	0	NA	intron (NM_001077595, intron 2 of 9)	intron (NM_001077595, intron 2 of 9)	27374	NM_001077596	27428	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	7.902	2.934	1.428	6.521	6.427	4.171	5.612	4.866	6.243	8.068	3.883	2.246	5.963	7.958	5.539	7.125	5.575	7.093	2.494	1.999	1.692	2.762	1.937	1.587	6.751
11818	chr5	136865923	136867406	+	0	NA	intron (NM_001346699, intron 1 of 12)	(GAA)n|Simple_repeat|Simple_repeat	16443	NM_024474	140709	Mm.295020	NM_024474	ENSMUSG00000004415	Col26a1	9430032K24Rik|BC002218|Col26a|Emid2|Emu2	collagen, type XXVI, alpha 1	protein-coding	1.338	1.046	0.567	1.751	2.571	1.563	1.272	1.805	2.288	1.787	0.864	0.657	1.842	3.610	1.829	1.816	1.147	2.925	0.708	0.414	0.685	0.988	nan	0.420	1.411
9170	chr3	21857296	21864768	+	0	NA	Intergenic	Intergenic	-215620	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	5.511	nan	3.228	3.838	3.026	1.121	4.815	6.337	5.345	3.410	6.033	3.756	4.554	4.915	5.022	7.146	4.520	6.134	1.130	1.258	0.498	1.865	0.600	0.329	4.970
4011	chr13	41010558	41014868	+	0	NA	exon (NM_026550, exon 10 of 10)	exon (NM_026550, exon 10 of 10)	-3537	NM_025387	66154	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	8.481	nan	1.006	5.439	4.635	3.125	5.233	8.271	4.363	4.817	7.048	3.873	4.505	6.994	5.467	5.176	3.337	5.185	2.713	1.470	1.450	2.417	2.464	2.107	7.437
1326	chr10	59366868	59385590	+	0	NA	Intergenic	Intergenic	-27456	NM_023530	69836	Mm.30268	NM_023530	ENSMUSG00000009646	Pla2g12b	2010002E04Rik|Fksg71|Pla2g13|hlb218	phospholipase A2, group XIIB	protein-coding	5.531	7.324	4.365	5.026	5.502	4.429	4.021	6.840	3.808	5.084	5.548	4.214	3.633	6.419	4.951	5.160	4.233	4.507	nan	3.118	3.537	4.371	3.612	3.483	nan
6402	chr17	24856050	24857923	+	0	NA	intron (NM_001159626, intron 4 of 8)	intron (NM_001159626, intron 4 of 8)	6319	NM_001159626	14651	Mm.43784	NM_024284	ENSMUSG00000024158	Hagh	BC019817|Glo-2|Glo2|Rsp29	hydroxyacyl glutathione hydrolase	protein-coding	7.708	9.790	3.832	6.425	7.773	6.297	8.930	4.543	3.301	5.258	4.465	2.564	6.271	7.956	6.404	7.245	3.761	4.879	4.171	3.051	6.526	4.355	2.754	3.596	8.542
13985	chr8	10934131	10937984	+	0	NA	Intergenic	Intergenic	-7600	NR_135302	665306	Mm.358758	NR_030715	ENSMUSG00000038917	3930402G23Rik	-	RIKEN cDNA 3930402G23 gene	ncRNA	6.833	0.974	0.595	3.820	2.859	1.274	6.472	8.014	4.129	5.409	1.964	1.317	8.595	7.448	7.350	10.341	7.214	4.615	0.831	0.943	0.498	1.797	0.691	0.567	7.311
10175	chr4	63059240	63067683	+	0	NA	intron (NM_028326, intron 2 of 14)	intron (NM_028326, intron 2 of 14)	90711	NM_007443	11699	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	8.476	19.185	5.861	8.494	3.873	1.661	6.660	6.586	4.533	6.098	3.980	1.480	5.387	8.776	7.299	7.976	3.638	6.640	2.803	2.283	1.709	nan	nan	1.448	10.446
3714	chr12	110029900	110034031	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	126108	NR_045466	67280	Mm.390495	NR_045466		3110009F21Rik	-	RIKEN cDNA 3110009F21 gene	ncRNA	10.353	13.532	3.991	10.805	5.419	5.282	9.010	7.435	nan	14.485	6.184	3.924	7.979	nan	9.863	11.762	8.162	9.804	5.729	2.276	4.013	6.792	4.206	6.187	18.648
9038	chr2	167749411	167762445	+	0	NA	Intergenic	L2a|LINE|L2	64751	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	7.802	8.299	4.080	7.217	5.401	3.703	4.951	7.615	5.261	6.759	5.283	3.005	5.994	8.392	6.092	7.229	7.013	6.785	nan	3.301	3.110	3.658	3.797	3.852	8.242
12348	chr6	82916129	82921081	+	0	NA	exon (NM_011350, exon 8 of 14)	exon (NM_011350, exon 8 of 14)	21164	NM_001308374	20355	Mm.270543	NM_011350	ENSMUSG00000000627	Sema4f	Sema W	sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	protein-coding	4.475	1.000	0.839	3.607	3.982	2.758	3.731	2.829	5.115	5.883	1.761	0.990	7.652	7.847	4.128	7.142	7.790	5.173	0.740	0.871	0.624	0.417	0.828	0.681	4.949
11901	chr5	141179385	141182030	+	0	NA	Intergenic	Intergenic	-60827	NM_177879	330222	Mm.151931	NM_177879	ENSMUSG00000039683	Sdk1	5330440E10|6720466O15Rik	sidekick cell adhesion molecule 1	protein-coding	6.725	7.739	3.339	7.710	4.239	4.173	8.176	6.582	4.197	5.248	4.846	2.897	5.230	6.535	6.923	7.772	5.331	6.162	4.426	3.330	4.705	5.203	3.773	5.157	9.351
15831	chrX	138931725	138946073	+	0	NA	intron (NM_013724, intron 2 of 27)	intron (NM_013724, intron 2 of 27)	24469	NM_013724	27206	Mm.482319	NM_013724	ENSMUSG00000052854	Nrk	AA407323|AA409510|AI225895|AV168563|AW538185|Nesk	Nik related kinase	protein-coding	3.613	0.244	0.199	2.340	5.529	4.324	4.036	7.702	4.036	5.298	1.190	0.669	4.671	5.029	3.576	4.615	4.796	4.309	0.713	0.935	0.740	0.493	0.537	0.615	2.163
11851	chr5	137971622	137976645	+	0	NA	Intergenic	Intergenic	-7388	NM_013478	12007	Mm.30061	NM_013478	ENSMUSG00000037053	Azgp1	Zag	alpha-2-glycoprotein 1, zinc	protein-coding	10.689	10.920	4.260	10.214	5.607	3.110	9.575	8.121	5.908	10.430	7.055	3.681	6.992	11.854	9.356	9.243	7.408	8.410	6.127	4.000	3.316	5.550	5.618	5.150	12.584
8670	chr2	131011292	131018531	+	0	NA	intron (NM_009730, intron 25 of 28)	ORR1D1|LTR|ERVL-MaLR	25487	NR_105969	102465606		NR_105969	ENSMUSG00000098686	Mir6973b	Gm27815|mmu-mir-6973b	microRNA 6973b	ncRNA	3.659	7.488	3.878	4.279	3.258	1.848	3.787	6.084	3.774	4.018	2.427	1.056	6.489	6.410	5.124	nan	5.946	5.121	nan	3.646	3.362	7.141	4.394	3.552	7.737
2637	chr11	93745549	93748352	+	0	NA	Intergenic	RMER13B|LTR|ERVK	138816	NM_001013375	217109	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	6.396	11.659	3.586	8.843	3.350	2.407	5.288	5.299	4.087	9.725	5.167	2.669	5.441	6.402	7.339	8.405	5.207	6.180	5.352	nan	3.724	6.337	2.918	4.254	10.767
11219	chr5	47862717	47865120	+	0	NA	Intergenic	L1MEc|LINE|L1	-119237	NR_111900	20563	Mm.289739	NM_178804	ENSMUSG00000031558	Slit2	Drad-1|E030015M03Rik|E130320P19Rik|Slil3|mKIAA4141|slit-2	slit homolog 2 (Drosophila)	protein-coding	4.200	0.451	0.377	2.631	2.211	1.151	6.031	4.538	4.299	3.907	1.730	2.216	6.355	5.827	6.120	5.713	4.978	5.165	0.888	0.618	0.693	1.415	0.309	0.197	2.724
6234	chr16	93741748	93747358	+	0	NA	intron (NM_027293, intron 4 of 36)	RLTR11A2|LTR|ERVK	32646	NM_027293	70028	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	4.805	0.814	0.617	2.800	2.420	2.162	7.171	6.159	nan	4.679	0.786	1.532	7.580	7.477	nan	8.232	4.577	nan	nan	1.122	1.189	1.729	0.479	0.455	7.719
14993	chr9	42911798	42916475	+	0	NA	intron (NM_175481, intron 1 of 20)	intron (NM_175481, intron 1 of 20)	30235	NM_175481	110637	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	8.272	5.843	2.326	8.169	4.853	2.565	5.219	7.380	5.645	10.103	5.846	3.523	7.328	9.492	7.530	9.809	5.465	7.964	nan	2.070	1.530	3.828	2.066	1.784	12.209
6509	chr17	29625290	29640459	+	0	NA	intron (NR_132314, intron 5 of 27)	ID_B1|SINE|B4	18085	NM_021419	58230	Mm.305994	NM_021419	ENSMUSG00000090083	Rnf8	3830404E21Rik|AIP37|laXp180	ring finger protein 8	protein-coding	8.871	8.123	3.580	6.580	5.135	4.142	7.146	5.951	4.990	6.630	3.579	2.941	6.805	8.259	5.609	nan	6.858	5.624	2.565	3.331	3.713	3.508	3.425	3.490	8.585
589	chr1	132627131	132639045	+	0	NA	intron (NM_001160318, intron 6 of 26)	GA-rich|Low_complexity|Low_complexity	9770	NM_001160316	269116	Mm.326702	NM_182716	ENSMUSG00000026442	Nfasc	AA387016|D430023G06Rik|NF|mKIAA0756	neurofascin	protein-coding	9.425	nan	0.359	5.789	4.057	2.275	7.361	7.288	7.607	8.590	6.559	4.074	9.135	10.423	7.703	13.089	7.060	10.428	nan	0.900	0.813	0.907	1.053	0.705	7.658
13876	chr7	148131667	148134804	+	0	NA	Intergenic	Intergenic	2818400	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	3.101	3.048	0.859	4.859	1.532	0.398	2.704	3.762	nan	3.183	10.463	2.876	2.837	3.153	2.311	2.360	1.321	3.027	0.848	0.851	0.399	1.029	nan	0.214	2.963
12152	chr6	34688597	34690006	+	0	NA	intron (NM_001347100, intron 3 of 13)	intron (NM_001347100, intron 3 of 13)	-20143	NM_145575	109624	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	3.844	0.742	0.451	1.567	2.147	1.480	3.335	3.557	2.064	2.994	1.153	0.640	5.235	4.434	4.361	4.996	2.885	4.009	nan	0.452	1.199	nan	nan	0.717	nan
9864	chr3	146182090	146184981	+	0	NA	exon (NM_026656, exon 10 of 14)	exon (NM_026656, exon 10 of 14)	33361	NM_001005846	68279	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	4.112	5.371	2.919	6.089	5.521	4.703	7.058	4.476	4.593	5.600	3.631	2.333	7.116	7.096	6.726	6.714	6.553	7.230	3.354	1.862	3.192	3.357	3.487	4.489	8.453
8939	chr2	163296618	163299037	+	0	NA	intron (NM_001098799, intron 3 of 8)	intron (NM_001098799, intron 3 of 8)	72373	NM_001098799	269389	Mm.207709	NM_001098799	ENSMUSG00000074607	Tox2	AI851523|AV026525|BI987407|Gcx1|RxHMG1	TOX high mobility group box family member 2	protein-coding	7.564	3.825	0.998	6.174	4.061	3.301	5.952	10.973	6.035	8.410	3.021	2.275	7.498	8.761	7.911	10.593	8.136	7.403	nan	1.582	2.285	4.327	2.272	2.932	13.751
12188	chr6	39523471	39524791	+	0	NA	intron (NM_172477, intron 1 of 18)	B3|SINE|B2	33703	NM_172477	209773	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	6.573	10.252	2.225	11.140	2.876	1.675	7.098	8.609	5.908	8.297	5.564	3.747	8.102	7.303	11.719	14.273	7.336	8.486	5.395	1.871	2.328	8.564	nan	3.273	11.998
13551	chr7	114822840	114832386	+	0	NA	intron (NM_173767, intron 7 of 12)	intron (NM_173767, intron 7 of 12)	81847	NM_173767	233752	Mm.83037	NM_173767	ENSMUSG00000048782	Insc	3830422K02Rik|C730020D23	inscuteable homolog (Drosophila)	protein-coding	4.048	1.191	0.772	3.401	2.710	1.551	4.171	8.593	3.875	3.589	5.962	3.556	5.364	6.858	5.998	6.063	4.722	6.672	2.535	1.196	0.673	1.992	1.938	1.235	5.784
150	chr1	43883550	43885396	+	0	NA	Intergenic	Intergenic	-49521	NM_001310540	22019	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	6.956	6.909	2.759	5.618	1.385	1.639	4.309	3.632	3.237	6.243	3.399	2.689	5.376	4.130	4.959	9.801	3.583	6.315	nan	1.088	1.154	5.103	1.600	2.274	8.278
7900	chr19	57172046	57176307	+	0	NA	intron (NM_001290813, intron 1 of 20)	intron (NM_001290813, intron 1 of 20)	23455	NM_001103177	226251	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	3.352	2.833	1.630	5.031	1.852	1.173	1.262	nan	2.873	2.842	1.461	2.091	1.114	2.064	nan	2.888	1.884	4.095	0.839	1.321	0.796	1.346	0.986	0.793	3.246
7000	chr18	5603107	5604726	+	0	NA	intron (NM_011546, intron 1 of 7)	intron (NM_011546, intron 1 of 7)	-11479	NR_033552	791318	Mm.84339	NR_033552	ENSMUSG00000063087	Gm10125	ENSMUSG00000063087|Zeb1os	predicted gene 10125	ncRNA	6.935	5.307	3.041	5.189	3.888	1.842	3.760	2.983	3.066	3.847	2.213	3.402	nan	5.406	3.976	2.970	2.151	4.466	4.425	6.304	2.140	3.779	8.785	5.520	5.457
245	chr1	64135313	64137029	+	0	NA	Intergenic	Intergenic	-14782	NM_033563	93691	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	5.551	1.541	0.511	5.109	1.814	1.631	2.781	3.298	2.587	2.505	2.415	2.207	1.969	3.336	2.745	3.609	nan	5.050	5.490	4.807	1.680	3.562	6.170	3.808	3.337
2511	chr11	78212008	78214391	+	0	NA	intron (NM_009297, intron 29 of 36)	intron (NM_009297, intron 29 of 36)	19807	NM_001045516	216974	Mm.50974	NM_001045516	ENSMUSG00000044122	Proca1	4933404M19Rik	protein interacting with cyclin A1	protein-coding	nan	0.909	0.272	1.785	1.353	0.404	nan	2.459	1.450	1.696	0.533	0.465	2.409	nan	3.402	3.018	1.494	2.871	1.208	0.656	nan	2.764	0.382	0.366	3.754
13662	chr7	121970161	121975050	+	0	NA	intron (NM_001033318, intron 3 of 16)	ID4_|SINE|ID	9088	NM_001033318	233824	Mm.442015	NM_001033318	ENSMUSG00000034951	Cog7	5630400E24Rik|Gm167	component of oligomeric golgi complex 7	protein-coding	0.273	0.733	0.323	0.337	0.078	0.082	0.273	0.750	0.382	0.227	0.220	0.264	0.215	nan	0.434	0.570	0.326	0.327	4.926	1.792	1.423	6.762	2.610	1.767	0.508
13552	chr7	114849752	114852879	+	0	NA	TTS (NM_173767)	TTS (NM_173767)	-97335	NR_040317	101786	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	4.918	5.515	2.547	4.837	2.860	1.998	4.606	8.058	4.165	4.827	6.164	3.786	5.710	7.629	6.807	6.334	5.061	5.707	3.223	2.188	1.520	2.521	3.559	3.104	7.092
7203	chr18	39894128	39895192	+	0	NA	Intergenic	Intergenic	121163	NM_011033	18459	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	2.045	1.789	1.465	1.098	3.769	1.346	5.051	4.155	2.657	1.913	1.677	2.400	4.036	3.528	3.635	2.944	2.577	4.682	0.965	0.662	0.115	0.802	0.527	0.701	1.766
2546	chr11	83215739	83219000	+	0	NA	Intergenic	Intergenic	-6207	NR_015519	100043636	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	2.542	0.667	0.184	3.527	2.609	1.095	1.080	0.819	1.299	2.935	0.354	0.272	1.967	5.250	1.862	1.149	1.209	2.689	3.297	0.525	0.489	nan	1.888	1.223	nan
11918	chr5	143722080	143724869	+	0	NA	intron (NM_029749, intron 4 of 17)	intron (NM_029749, intron 4 of 17)	8806	NM_029749	76800	Mm.259620	NM_029749	ENSMUSG00000051306	Usp42	2410140K03Rik|3110031A07Rik|A630018G05Rik|D5Ertd591e	ubiquitin specific peptidase 42	protein-coding	2.272	4.581	0.728	nan	1.128	0.954	1.453	1.030	nan	3.764	5.439	3.574	1.646	1.726	2.450	nan	1.101	2.488	2.287	0.996	1.991	7.094	1.714	2.180	4.071
5943	chr16	25376600	25380106	+	0	NA	intron (NM_175165, intron 4 of 5)	intron (NM_175165, intron 4 of 5)	91536	NM_175165	71338	Mm.126851	NM_175165	ENSMUSG00000048399	Tprg	5430420C16Rik|Tprg1	transformation related protein 63 regulated	protein-coding	3.091	0.600	0.639	0.788	0.745	0.423	4.941	5.017	2.226	1.854	5.333	2.414	nan	3.617	3.267	nan	2.647	3.891	0.810	0.734	0.245	1.713	nan	0.717	2.716
8423	chr2	90371619	90376251	+	0	NA	Intergenic	L1Md_T|LINE|L1	-26705	NM_146263	258330	Mm.330392	NM_146263	ENSMUSG00000082980	Olfr1274-ps	GA_x5J8B7W2BV0-3116-4045|MOR228-4|MOR228-5|Olfr1274	olfactory receptor 1274, pseudogene	protein-coding	3.991	1.756	1.330	2.328	3.159	1.952	2.133	5.645	3.188	2.779	3.008	1.894	4.066	3.950	3.021	3.855	3.527	4.294	1.056	0.761	0.340	0.713	1.149	0.969	4.251
11410	chr5	91039550	91043066	+	0	NA	Intergenic	Intergenic	13791	NM_053087	71920	Mm.197319	NM_053087	ENSMUSG00000035020	Epgn	2310069M11Rik|epigen	epithelial mitogen	protein-coding	3.523	3.351	1.819	1.714	2.908	1.271	4.389	4.574	3.472	3.347	5.161	3.668	4.230	3.902	3.876	3.321	1.896	4.079	1.694	0.892	0.781	1.136	1.106	1.012	1.976
5498	chr15	83129947	83132144	+	0	NA	intron (NM_001347082, intron 6 of 7)	intron (NM_001347082, intron 6 of 7)	-8244	NM_029101	74778	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	3.257	2.646	1.262	7.278	1.441	1.342	nan	nan	nan	2.558	1.076	1.360	1.168	1.774	nan	2.290	nan	3.968	2.865	1.524	1.485	nan	1.303	0.746	2.742
9308	chr3	52691444	52695383	+	0	NA	Intergenic	MIR|SINE|MIR	-46311	NR_038079	329639	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	6.930	0.906	0.728	3.610	3.825	2.241	9.527	5.647	5.964	7.075	3.539	2.214	9.739	7.508	5.927	6.905	6.915	7.115	1.133	1.465	0.498	0.789	1.286	0.686	4.799
6946	chr17	87568618	87571944	+	0	NA	Intergenic	Intergenic	-65698	NM_008532	17075	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	4.345	1.110	0.753	3.146	3.051	1.814	5.516	3.037	3.846	3.702	7.332	4.490	4.371	3.885	4.700	4.113	3.396	4.039	1.014	0.717	0.442	1.176	0.733	0.400	3.533
12941	chr7	17166443	17170248	+	0	NA	Intergenic	Intergenic	17945	NM_054059	384557	Mm.486145	NM_054059	ENSMUSG00000053228	Ceacam3	EG384557|Psg24|cea12	carcinoembryonic antigen-related cell adhesion molecule 3	protein-coding	5.108	1.783	0.956	3.899	4.376	3.362	4.981	4.876	3.924	3.902	2.371	1.740	6.126	5.528	3.754	4.216	3.178	5.672	1.808	0.945	1.131	1.022	1.269	0.977	4.844
4994	chr14	122327880	122331488	+	0	NA	intron (NM_029556, intron 2 of 7)	intron (NM_029556, intron 2 of 7)	-96046	NR_015532	68245	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	2.685	9.122	3.493	3.660	1.584	1.016	0.945	1.821	2.993	2.426	2.469	1.281	0.845	1.465	nan	1.777	1.758	2.894	1.355	1.981	1.340	1.130	1.966	1.363	2.047
2666	chr11	94817830	94820633	+	0	NA	Intergenic	Intergenic	30362	NM_001205037	432591	Mm.370372	NM_001205037		Gm11544	OTTMUSG00000002042	predicted gene 11544	protein-coding	4.105	nan	0.903	1.883	1.332	0.811	3.487	5.035	3.441	3.659	2.337	3.362	4.099	4.239	4.003	5.601	3.039	2.809	5.621	5.268	5.791	5.653	nan	nan	4.418
3012	chr11	116688178	116689626	+	0	NA	intron (NM_009180, intron 2 of 8)	intron (NM_009180, intron 2 of 8)	5758	NM_009180	20446	Mm.3947	NM_009180	ENSMUSG00000057286	St6galnac2	II|ST6GalNAc|Siat7|Siat7b	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	protein-coding	3.146	1.982	0.406	7.022	2.271	1.823	3.119	1.903	2.314	5.720	1.530	0.642	1.796	3.461	3.435	3.095	1.823	3.383	2.830	nan	1.703	3.731	1.947	2.669	4.400
11557	chr5	111155021	111159443	+	0	NA	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	153088	NR_030482	735278		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	5.687	0.681	0.605	1.897	2.332	1.963	6.153	3.427	2.947	3.177	0.851	0.842	5.404	7.633	4.540	4.255	5.420	4.161	nan	0.963	0.934	0.602	1.055	0.746	3.415
9342	chr3	60127588	60129899	+	0	NA	Intergenic	(CCA)n|Simple_repeat|Simple_repeat	46874	NM_032400	84112	Mm.125110	NM_032400	ENSMUSG00000027762	Sucnr1	Gpr91	succinate receptor 1	protein-coding	3.471	0.889	0.623	2.295	1.525	1.151	4.967	4.666	4.331	4.054	0.854	1.858	6.313	3.266	4.122	3.648	3.542	6.827	0.947	0.881	0.616	1.137	0.282	0.357	2.288
9111	chr2	180697943	180699203	+	0	NA	intron (NM_177852, intron 1 of 14)	intron (NM_177852, intron 1 of 14)	3529	NM_011805	23856	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	5.781	1.538	0.552	1.879	0.500	0.642	6.381	7.858	2.619	1.798	0.638	1.763	7.145	4.254	4.641	7.231	5.310	4.296	0.927	0.603	0.486	0.607	0.505	0.335	5.594
1099	chr10	12456788	12458213	+	0	NA	intron (NM_011682, intron 59 of 73)	intron (NM_011682, intron 59 of 73)	404235	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	1.696	1.750	0.602	4.673	0.635	0.269	0.758	1.010	1.924	1.525	0.733	0.726	0.935	1.023	1.328	1.562	0.831	3.200	0.895	0.355	0.434	0.639	0.092	0.301	2.158
3599	chr12	88163707	88168868	+	0	NA	Intergenic	Intergenic	15607	NM_001105254	100039315	Mm.426539	NM_001105254	ENSMUSG00000066027	Gm10436	ENSMUSG00000072907	predicted gene 10436	protein-coding	9.562	7.249	3.742	8.049	5.069	2.906	8.386	7.678	5.024	6.372	6.623	5.211	7.540	9.397	7.780	11.255	8.311	7.518	6.581	5.749	5.230	8.072	6.439	5.427	10.309
5311	chr15	73475365	73477109	+	0	NA	Intergenic	Intergenic	-36323	NM_001081066	105841	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	nan	7.735	1.875	nan	3.658	2.878	7.153	8.862	2.618	8.218	nan	2.010	4.712	5.228	5.488	6.163	nan	5.467	3.763	2.655	3.175	nan	3.845	5.430	9.172
14488	chr8	96896529	96905207	+	0	NA	Intergenic	Intergenic	-354895	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	6.941	16.828	8.064	5.375	5.408	2.743	5.756	11.278	5.087	7.234	4.794	3.138	8.736	11.080	6.750	5.932	5.421	6.718	0.881	1.323	1.006	1.191	1.279	0.933	6.281
5083	chr15	27709575	27710998	+	0	NA	Intergenic	Intergenic	-28744	NM_001242423	223433	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	3.213	2.186	1.386	2.285	1.168	0.693	3.596	1.521	1.939	1.820	0.857	0.646	3.554	3.664	2.334	3.220	2.395	3.360	0.491	0.778	0.924	1.023	0.477	0.337	3.622
4962	chr14	120693249	120701069	+	0	NA	Intergenic	Intergenic	-214035	NM_023579	70572	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5	importin 5	protein-coding	3.921	1.829	0.781	4.907	2.973	1.320	1.404	3.091	3.168	2.514	2.192	2.309	2.245	2.672	nan	3.438	1.596	4.457	6.283	3.422	2.070	6.944	3.995	2.579	2.472
34	chr1	16608063	16609902	+	0	NA	intron (NM_025773, intron 1 of 5)	B1_Mur1|SINE|Alu	10356	NM_025773	66799	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	10.856	11.975	3.739	9.085	3.632	3.182	6.921	6.417	4.994	11.311	6.708	3.470	6.847	7.206	7.394	13.076	7.596	8.926	5.087	3.408	3.476	5.584	3.277	3.513	14.521
12198	chr6	43241151	43244331	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	7131	NM_146370	18346	Mm.222840	NM_146370	ENSMUSG00000061210	Olfr47	IB12|MOR261-9|Olfr13	olfactory receptor 47	protein-coding	3.242	0.486	0.442	1.735	1.594	0.687	8.000	10.116	2.846	2.123	4.161	2.588	4.678	5.669	5.686	5.448	3.238	3.700	nan	1.023	0.728	2.901	0.984	0.773	2.632
14565	chr8	109043058	109045515	+	0	NA	Intergenic	Lx|LINE|L1	-30936	NR_126329	628686	Mm.203332	NR_126329	ENSMUSG00000097393	D030068K23Rik	-	RIKEN cDNA D030068K23 gene	ncRNA	0.830	0.700	0.629	0.444	0.581	0.293	0.680	0.782	0.399	0.728	7.532	2.055	0.656	1.092	0.558	1.170	0.663	0.749	0.577	0.461	0.257	nan	0.259	0.117	0.698
12276	chr6	58947210	58951550	+	0	NA	intron (NM_153574, intron 13 of 17)	intron (NM_153574, intron 13 of 17)	-42254	NM_021432	58243	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	2.032	2.361	1.866	1.619	1.131	0.567	1.333	2.442	1.875	1.524	1.717	1.137	1.713	1.467	1.898	nan	nan	2.682	7.126	5.303	2.711	3.712	8.147	5.799	2.230
10141	chr4	59848669	59853628	+	0	NA	intron (NM_172468, intron 1 of 8)	intron (NM_172468, intron 1 of 8)	45498	NM_172468	209131	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	4.836	nan	1.724	2.192	5.224	4.376	5.170	2.985	2.822	3.905	0.797	0.933	4.058	4.281	2.656	3.189	3.033	3.612	nan	2.603	2.102	2.260	3.642	3.563	3.743
2656	chr11	94263472	94266587	+	0	NA	Intergenic	RMER1A|Other|Other	-22450	NM_181819	278507	Mm.342216	NM_181819	ENSMUSG00000044177	Wfikkn2	2610304F08Rik|AY100450|Gasp1|WFIKKNRP	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	protein-coding	2.467	nan	0.293	3.155	2.588	1.288	4.369	6.196	3.656	3.083	1.186	1.425	4.501	6.995	5.566	6.270	nan	5.166	0.884	nan	0.433	0.967	nan	nan	2.843
1410	chr10	69484711	69486086	+	0	NA	Intergenic	Intergenic	-48310	NM_170729	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	4.881	1.075	1.188	2.196	3.627	1.759	1.556	1.668	2.232	3.265	1.299	0.655	2.981	4.511	2.385	2.139	4.562	2.795	0.589	0.187	0.356	0.482	0.409	0.755	3.441
2613	chr11	88338516	88343406	+	0	NA	3' UTR (NM_054043, exon 14 of 14)	3' UTR (NM_054043, exon 14 of 14)	-11812	NR_039545	100628571		NR_039545	ENSMUSG00000092985	Mir378b	mir-378b|mmu-mir-378b	microRNA 378b	ncRNA	2.276	10.016	3.786	nan	1.505	0.778	1.034	1.175	1.785	2.060	1.165	0.573	0.814	1.717	1.506	2.188	0.895	2.287	2.028	1.887	1.266	nan	2.128	1.260	nan
3056	chr11	118069264	118079745	+	0	NA	intron (NM_001167746, intron 44 of 80)	intron (NM_001167746, intron 44 of 80)	54715	NM_001167746	69926	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	4.141	10.309	4.094	5.006	3.502	1.778	nan	3.976	3.607	3.746	3.348	2.342	2.071	3.246	3.578	3.697	1.855	4.770	3.756	nan	2.057	4.955	2.476	1.759	3.577
13834	chr7	140122372	140123831	+	0	NA	Intergenic	Intergenic	-2556	NM_001346725	212503	Mm.486735	NM_153783	ENSMUSG00000025464	Paox	2410012F02Rik|AI118225|Pao	polyamine oxidase (exo-N4-amino)	protein-coding	9.752	13.831	4.365	14.175	8.156	5.342	8.204	14.050	6.522	20.519	8.834	4.856	11.743	12.491	12.261	13.315	7.840	12.288	6.644	2.215	4.564	7.279	3.749	6.315	20.953
2693	chr11	96132806	96193420	+	0	NA	intron (NM_172799, intron 14 of 14)	intron (NM_172799, intron 14 of 14)	29327	NM_172799	237930	Mm.249912	NM_172799	ENSMUSG00000038756	Ttll6	4932418K24Rik|D11Moh43e|D11Moh44e|t8130b59	tubulin tyrosine ligase-like family, member 6	protein-coding	1.529	nan	0.729	2.396	1.255	0.644	0.981	0.549	0.937	1.238	0.638	0.588	0.480	1.054	0.719	1.012	nan	1.030	6.060	nan	3.256	6.963	nan	nan	1.135
10518	chr4	125822881	125827711	+	0	NA	Intergenic	Intergenic	97014	NR_015560	72395	Mm.112888	NR_015560	ENSMUSG00000085562	2610028E06Rik	BB043107	RIKEN cDNA 2610028E06 gene	ncRNA	5.465	4.102	1.082	9.069	2.262	1.764	6.037	4.119	4.068	7.535	2.682	1.558	4.780	6.046	5.344	6.483	2.555	6.801	1.660	2.084	2.060	3.352	4.426	4.440	8.775
8495	chr2	103046463	103052643	+	0	NA	intron (NM_175094, intron 2 of 10)	L1MEi|LINE|L1	23960	NM_175094	27402	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	4.206	0.871	0.381	3.749	2.788	1.460	3.257	7.586	4.675	4.560	10.243	1.954	5.757	7.733	4.533	6.093	5.908	5.317	1.036	0.502	0.331	nan	1.121	0.583	4.967
4449	chr14	8640109	8641614	+	0	NA	intron (NM_028934, intron 4 of 15)	intron (NM_028934, intron 4 of 15)	25429	NM_028934	74430	Mm.271901	NM_028934	ENSMUSG00000021747	4930452B06Rik	4933406L09Rik|AI854000	RIKEN cDNA 4930452B06 gene	protein-coding	2.143	0.777	0.518	1.833	2.370	1.061	5.132	11.559	3.226	2.874	3.600	4.502	2.523	4.829	3.629	3.401	1.831	2.625	1.012	0.919	0.971	0.663	0.894	0.417	2.743
1434	chr10	75137588	75141875	+	0	NA	intron (NM_001081412, intron 5 of 22)	intron (NM_001081412, intron 5 of 22)	-72342	NM_153406	74392	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	7.446	1.686	0.725	8.446	5.368	2.515	5.621	5.902	5.143	8.444	1.578	0.890	9.387	14.476	10.932	12.566	6.361	10.213	nan	0.916	0.430	2.583	0.441	0.414	16.679
11512	chr5	104431572	104434000	+	0	NA	Intergenic	Intergenic	-2325	NM_001204201	20750	Mm.288474	NM_009263	ENSMUSG00000029304	Spp1	2AR|Apl-1|BNSP|BSPI|Bsp|ETA-1|Eta|OP|Opn|Opnl|Ric|Spp-1	secreted phosphoprotein 1	protein-coding	6.810	0.376	0.443	5.583	5.205	4.481	8.159	5.528	6.429	7.534	1.276	4.168	7.774	9.401	7.369	8.168	7.026	7.424	nan	0.843	0.961	0.609	0.972	0.870	6.953
1547	chr10	84071812	84076386	+	0	NA	Intergenic	B3|SINE|B2	351234	NM_001145198	69784	Mm.271188	NM_001145198	ENSMUSG00000087651	1500009L16Rik	2700050C19Rik|OCC-1	RIKEN cDNA 1500009L16 gene	protein-coding	3.512	1.143	0.690	3.193	1.074	0.761	1.688	1.638	3.062	3.054	0.443	0.397	4.188	nan	4.422	5.953	4.399	4.151	3.246	0.984	0.667	nan	nan	0.711	6.230
2471	chr11	75405870	75411147	+	0	NA	Intergenic	B4|SINE|B4	14115	NM_011340	20317	Mm.2044	NM_011340	ENSMUSG00000000753	Serpinf1	AI195227|EPC-1|Pedf|Pedfl|Sdf3	serine (or cysteine) peptidase inhibitor, clade F, member 1	protein-coding	2.870	2.515	1.723	2.889	1.762	1.095	nan	4.556	3.173	2.281	4.128	2.919	1.813	2.778	2.412	3.015	2.698	2.950	0.808	1.511	nan	1.446	0.894	0.845	2.858
3457	chr12	77651974	77655199	+	0	NA	Intergenic	Intergenic	243445	NM_001252616	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	3.955	2.450	1.334	2.258	2.002	1.293	2.087	4.478	1.739	1.983	5.046	3.587	2.301	3.167	1.790	nan	1.824	1.440	1.850	1.289	1.336	1.561	1.769	1.235	2.145
11145	chr5	33616346	33617630	+	0	NA	intron (NM_178390, intron 2 of 5)	intron (NM_178390, intron 2 of 5)	12647	NM_178390	74504	Mm.294695	NM_178390	ENSMUSG00000037339	Fam53a	2410018C17Rik|5430419M09Rik|Dntnp	family with sequence similarity 53, member A	protein-coding	8.265	14.328	3.861	11.243	2.981	1.857	8.065	6.344	4.707	12.337	6.836	4.023	7.971	10.006	11.115	11.336	5.694	8.650	6.938	1.330	4.012	7.238	3.092	3.755	15.698
7531	chr19	8894026	8896311	+	0	NA	exon (NM_176843, exon 2 of 2)	exon (NM_176843, exon 2 of 2)	2181	NM_176843	109077	Mm.290474	NM_176843	ENSMUSG00000071652	Ints5	1110055N21Rik|mKIAA1698	integrator complex subunit 5	protein-coding	15.139	17.178	7.808	13.067	9.087	5.387	16.302	16.600	6.694	15.361	10.574	5.928	10.472	16.026	12.011	12.752	13.753	11.354	4.522	5.092	6.072	7.485	7.920	8.922	21.158
1045	chr1	194502862	194505795	+	0	NA	Intergenic	Intergenic	-115501	NM_008882	18845	Mm.2251	NM_008882	ENSMUSG00000026640	Plxna2	2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463	plexin A2	protein-coding	4.953	0.627	0.575	0.684	0.720	0.422	4.194	2.970	1.846	2.047	0.559	0.687	1.440	2.372	3.801	nan	2.213	2.292	1.428	0.799	0.501	0.716	nan	1.355	4.405
15122	chr9	57505133	57507484	+	0	NA	TTS (NM_133982)	TTS (NM_133982)	2206	NM_133982	102614	Mm.274421	NM_133982	ENSMUSG00000062309	Rpp25	AI851155	ribonuclease P/MRP 25 subunit	protein-coding	0.862	0.871	0.989	0.817	0.543	0.318	1.091	nan	1.041	1.686	0.628	0.174	1.969	3.402	1.801	2.326	0.972	1.497	2.987	1.371	1.502	2.503	1.659	1.583	2.036
13509	chr7	108159174	108162246	+	0	NA	promoter-TSS (NM_001011810)	promoter-TSS (NM_001011810)	-839	NM_001011810	258041	Mm.377336	NM_001011810	ENSMUSG00000108995	Olfr485	MOR204-30P	olfactory receptor 485	protein-coding	7.577	1.528	0.548	6.229	3.719	2.041	3.569	8.574	3.197	5.475	4.150	1.662	4.879	7.724	5.077	5.730	6.215	nan	nan	1.525	1.550	1.242	0.616	0.621	9.629
12896	chr7	3299744	3303339	+	0	NA	Intergenic	ID_B1|SINE|B4	-1991	NM_001291434	18752	Mm.7980	NM_011102	ENSMUSG00000078816	Prkcg	PKCgamma|Pkcc|Prkcc	protein kinase C, gamma	protein-coding	3.590	2.031	1.078	2.756	3.162	1.509	4.306	5.389	2.724	2.862	1.897	1.152	3.104	5.977	3.327	3.726	4.383	3.482	0.771	1.545	1.006	0.612	1.471	1.026	5.202
11408	chr5	90651961	90653955	+	0	NA	Intergenic	Intergenic	-12431	NM_001310656	73246	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	5.660	8.679	4.202	7.371	4.100	4.073	5.764	4.521	4.286	6.443	4.523	3.154	5.303	6.201	6.515	6.678	5.103	6.281	5.018	1.697	4.280	4.732	2.054	4.912	6.876
9435	chr3	87939370	87956329	+	0	NA	promoter-TSS (NM_007759)	promoter-TSS (NM_007759)	-844	NM_007759	12904	Mm.4757	NM_007759	ENSMUSG00000004885	Crabp2	AI893628|Crabp-2|CrabpII	cellular retinoic acid binding protein II	protein-coding	9.036	14.664	4.847	9.962	7.092	3.954	9.322	7.610	6.015	9.190	5.872	3.633	8.992	11.782	8.802	nan	6.807	9.487	nan	2.722	2.441	4.124	2.233	1.963	11.890
8365	chr2	73367222	73368335	+	0	NA	intron (NM_001276444, intron 6 of 15)	intron (NM_001276444, intron 6 of 15)	18702	NM_001276443	68526	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	11.223	5.934	1.066	13.576	2.306	1.660	1.432	2.037	4.404	15.105	1.526	1.751	3.500	4.286	5.991	11.870	5.964	8.234	6.029	1.558	2.763	11.852	2.961	4.138	16.117
11577	chr5	113579226	113584291	+	0	NA	intron (NM_177292, intron 7 of 7)	L1MDa|LINE|L1	31338	NM_177292	320916	Mm.102783	NM_177292	ENSMUSG00000063430	Wscd2	4933413A10Rik|C530024P05Rik|Gm450	WSC domain containing 2	protein-coding	2.672	0.960	0.546	2.896	2.740	1.480	3.552	4.255	2.547	3.080	8.448	4.297	2.721	3.490	4.622	4.616	1.892	3.282	3.802	nan	2.338	4.103	nan	2.319	3.819
1069	chr1	196838407	196844889	+	0	NA	Intergenic	Intergenic	-1664933	NM_007758	12902	Mm.235387	NM_007758	ENSMUSG00000026616	Cr2	C3DR|CD21|CD35|Cr-1|Cr-2|Cr1	complement receptor 2	protein-coding	11.217	1.186	0.632	6.443	6.348	2.882	6.440	8.970	5.506	5.716	3.671	3.952	7.117	9.028	5.498	8.151	8.578	7.911	3.588	4.069	1.443	2.558	nan	4.054	4.973
10259	chr4	88955769	88957483	+	0	NA	Intergenic	Intergenic	-14584	NR_132735	106557447	Mm.484668	NR_132734		LOC106557447	-	uncharacterized LOC106557447	ncRNA	9.422	4.753	1.230	7.028	4.361	1.829	8.540	7.882	nan	12.543	6.784	3.771	7.283	11.343	10.016	9.803	5.087	9.697	5.539	nan	1.572	7.237	2.815	2.703	13.757
1224	chr10	40067543	40070672	+	0	NA	intron (NM_001114332, intron 3 of 5)	intron (NM_001114332, intron 3 of 5)	-43839	NM_144821	215929	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	7.069	10.266	3.395	7.143	3.768	2.437	5.119	5.657	4.334	8.096	5.938	4.957	5.540	7.468	7.465	8.330	5.930	7.153	4.842	3.048	2.498	5.951	3.417	4.122	10.079
12252	chr6	54128434	54130799	+	0	NA	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	89684	NM_001163640	69993	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	3.529	0.775	0.322	1.545	0.707	0.404	7.762	10.919	3.607	2.639	1.251	1.765	6.510	5.284	5.577	nan	6.059	3.856	nan	0.694	0.542	3.506	1.390	0.841	4.240
368	chr1	83131882	83135236	+	0	NA	Intergenic	L1ME2z|LINE|L1	16793	NM_001159738	20297	Mm.116739	NM_016960	ENSMUSG00000026166	Ccl20	CKb4|LARC|MIP-3A|MIP-3[a]|MIP3A|ST38|Scya20|exodus-1	chemokine (C-C motif) ligand 20	protein-coding	11.195	0.731	0.551	2.739	5.650	2.327	5.213	5.406	2.133	2.528	1.730	1.549	4.357	5.772	5.232	6.942	5.977	6.636	0.642	0.815	0.752	nan	0.763	0.381	3.921
5998	chr16	32086709	32089310	+	0	NA	intron (NM_024464, intron 3 of 5)	intron (NM_024464, intron 3 of 5)	-8667	NM_177326	224105	Mm.234204	NM_177326	ENSMUSG00000022781	Pak2	5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182	p21 protein (Cdc42/Rac)-activated kinase 2	protein-coding	6.295	2.728	1.710	1.620	3.637	2.584	9.622	10.621	2.679	3.100	4.589	4.244	6.302	7.027	5.879	6.541	7.780	3.673	0.753	1.447	0.970	0.523	nan	0.841	5.577
3078	chr11	119250635	119256273	+	0	NA	intron (NM_175430, intron 14 of 18)	intron (NM_175430, intron 14 of 18)	-14509	NM_001159324	14387	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	9.885	9.040	3.300	10.697	7.342	4.485	8.312	7.561	5.214	8.698	6.364	4.001	6.379	11.335	7.889	10.103	8.029	8.194	6.016	nan	4.351	5.286	5.103	4.522	12.381
6293	chr17	4944436	4948706	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-48503	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	6.768	1.173	1.011	3.777	4.507	2.532	8.685	6.108	4.760	5.513	2.149	1.590	6.970	7.978	7.516	10.131	9.763	6.835	nan	2.210	1.451	3.077	3.185	3.072	8.676
4705	chr14	57247008	57248114	+	0	NA	Intergenic	Intergenic	-113950	NM_001010937	14623	Mm.25652	NM_008128	ENSMUSG00000040055	Gjb6	AA958971|Cx30|D14Bwg0506e	gap junction protein, beta 6	protein-coding	1.930	nan	0.205	1.012	0.671		2.620	5.534	1.235	0.543	0.365	0.518	2.120	3.268	2.359	1.829	1.669	1.528	3.081	1.569	1.694	2.548	2.405	1.420	3.259
12653	chr6	119351362	119353391	+	0	NA	TTS (NM_197985)	TTS (NM_197985)	-21610	NM_172492	211187	Mm.121498	NM_172492	ENSMUSG00000055003	Lrtm2	A230084J22|AI841794	leucine-rich repeats and transmembrane domains 2	protein-coding	4.604	2.528	2.372	5.167	4.244	3.925	3.358	4.061	2.918	2.535	1.185	2.120	1.659	4.051	2.511	3.638	2.938	2.872	0.930	1.837	1.802	0.521	nan	1.331	2.245
611	chr1	133902517	133905703	+	0	NA	intron (NM_054076, intron 2 of 6)	intron (NM_054076, intron 2 of 6)	3063	NM_054076	269120	Mm.59985	NM_054076	ENSMUSG00000010311	Optc	-	opticin	protein-coding	16.490	13.366	5.042	12.732	6.515	4.415	10.533	10.082	8.397	14.332	9.057	5.773	12.631	14.727	12.078	17.036	11.407	12.634	5.623	3.553	2.906	6.510	4.151	4.378	15.498
1849	chr10	127096938	127108277	+	0	NA	intron (NM_177614, intron 5 of 13)	intron (NM_177614, intron 5 of 13)	18553	NM_177614	216440	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	9.935	10.201	4.595	7.533	5.522	3.038	8.619	7.409	4.827	9.336	6.366	2.890	7.474	12.007	8.317	8.992	7.506	7.667	2.977	2.921	2.033	2.618	nan	2.861	13.742
849	chr1	168066813	168069344	+	0	NA	Intergenic	B3A|SINE|B2	364091	NM_001291508	18514	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	7.348	2.102	1.518	nan	3.857	1.568	3.092	9.372	4.271	5.643	5.093	4.616	5.640	7.272	nan	3.610	2.096	4.050	1.373	1.682	0.851	nan	nan	1.322	nan
4680	chr14	55512215	55514595	+	0	NA	exon (NM_009947, exon 5 of 17)	exon (NM_009947, exon 5 of 17)	2045	NM_009947	12891	Mm.5249	NM_009947	ENSMUSG00000022212	Cpne6	AU067659|BB076446	copine VI	protein-coding	7.299	9.772	3.300	7.532	4.934	2.996	6.983	nan	3.589	8.526	5.693	4.816	5.539	8.390	7.262	8.984	6.043	6.435	4.818	3.726	3.946	5.230	4.282	4.434	10.554
12981	chr7	20276207	20281197	+	0	NA	Intergenic	Intergenic	-44874	NM_001167150	667094	Mm.484989	NM_001167150	ENSMUSG00000094149	Gm8453	EG667094|Vmn1r145	predicted gene 8453	protein-coding	5.799	2.682	1.221	4.428	4.953	3.110	11.253	11.483	2.639	4.600	1.899	0.997	8.428	10.353	6.977	7.637	7.105	3.815	0.737	0.921	1.113	0.799	0.700	0.850	6.038
14839	chr9	2999968	3003112	+	0	NA	Intergenic	GSAT_MM|Satellite|Satellite	37203	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	nan	nan	47.019	23.874	31.230	40.808	24.312	nan	24.502	20.748	24.540	33.597	18.340	15.406	11.597	nan	nan	nan	nan	30.560	58.218	12.624	30.320	42.350	nan
492	chr1	107873831	107875125	+	0	NA	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-42781	NR_102306	319596	Mm.136054	NR_102306	ENSMUSG00000100457	D830032E09Rik	-	RIKEN cDNA D830032E09 gene	ncRNA	4.999	nan	0.999	0.715	0.437	0.473	6.447	6.200	1.357	1.458	2.196	1.001	6.650	4.382	2.475	4.258	2.758	2.467	0.651	0.400	0.301	0.974	4.555	2.645	1.194
14663	chr8	121969983	121976961	+	0	NA	intron (NM_016812, intron 1 of 13)	intron (NM_016812, intron 1 of 13)	-4552	NR_106096	102466915		NR_106096	ENSMUSG00000099140	Mir7237	Gm27482|mmu-mir-7237	microRNA 7237	ncRNA	0.590	0.981	0.444	0.604	0.429	0.281	0.365	0.754	0.431	0.749	0.445	0.257	0.300	0.497	0.573	nan	0.361	0.906	1.194	1.986	1.767	6.370	0.773	0.827	1.070
14153	chr8	36557965	36558970	+	0	NA	Intergenic	B4A|SINE|B4	55476	NM_015802	50768	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	5.247	13.540	2.669	5.945	2.271	1.835	4.331	6.006	3.267	7.543	4.057	1.884	5.221	4.991	6.021	8.856	3.615	5.667	4.081	1.278	3.100	6.298	2.017	3.924	11.836
2271	chr11	60032380	60036757	+	0	NA	intron (NM_001290012, intron 1 of 6)	intron (NM_001290012, intron 1 of 6)	2437	NM_008819	18618	Mm.2731	NM_008819	ENSMUSG00000000301	Pemt	PEAMT|PEMT2|PLMT|Pempt|Pempt2	phosphatidylethanolamine N-methyltransferase	protein-coding	7.957	8.189	2.401	9.119	5.307	3.662	6.907	8.004	5.832	9.001	6.024	4.068	7.490	9.554	9.537	10.967	5.836	8.959	4.641	2.159	2.626	4.916	2.965	2.561	10.907
13173	chr7	52316716	52318620	+	0	NA	Intergenic	Intergenic	-301952	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	10.056	6.464	3.001	7.754	5.066	2.679	7.552	11.214	6.689	7.238	5.017	3.548	9.448	10.944	10.340	9.873	7.723	9.461	4.822	3.467	2.286	4.957	3.228	3.011	10.113
9385	chr3	79293906	79299054	+	0	NA	Intergenic	Intergenic	-48896	NM_001142953	100233207	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	2.571	0.707	0.482	2.091	2.421	1.594	1.597	1.595	1.981	3.298	0.954	0.823	2.383	4.174	3.842	5.003	2.114	4.150	1.792	1.286	0.526	2.441	2.282	1.376	3.577
3225	chr12	21429783	21433318	+	0	NA	Intergenic	Intergenic	-14114	NM_011739	22630	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	protein-coding	6.120	1.634	0.660	2.369	1.971	0.884	6.662	5.483	3.805	3.177	6.387	3.081	5.901	6.570	6.286	5.462	3.773	3.520	2.413	2.539	1.548	3.335	3.098	2.168	5.678
15743	chrX	71030898	71033231	+	0	NA	Intergenic	Intergenic	-18192	NM_001256048	333639	Mm.371730	NM_001081354	ENSMUSG00000059401	Mamld1	G630014P10Rik	mastermind-like domain containing 1	protein-coding	6.682	8.816	2.909	5.295	3.473	2.847	4.378	5.293	3.873	4.352	4.693	2.464	4.482	5.771	5.277	6.855	3.538	5.782	4.307	2.530	3.330	4.447	3.408	3.946	8.121
13947	chr7	151764170	151768823	+	0	NA	Intergenic	Intergenic	6451661	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	7.117	nan	1.644	nan	4.516	2.984	5.206	9.987	nan	5.034	5.172	2.246	6.894	7.734	7.069	6.475	3.760	6.591	2.634	1.466	1.383	3.384	nan	1.924	8.912
9212	chr3	30378572	30381465	+	0	NA	intron (NM_021442, intron 1 of 2)	intron (NM_021442, intron 1 of 2)	129469	NM_021442	14013	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	3.453	0.622	0.764	5.038	5.480	4.428	nan	1.525	6.129	6.624	2.222	2.675	8.211	7.223	2.935	6.245	5.250	7.419	0.710	0.516	0.734	0.516	0.425	0.674	5.518
15315	chr9	75398142	75400192	+	0	NA	intron (NM_015806, intron 1 of 5)	B4A|SINE|B4	10192	NM_027418	50772	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	2.957	0.954	0.747	3.489	2.494	1.449	1.325	1.478	2.152	2.062	1.900	1.504	1.596	4.319	1.752	2.035	1.273	3.117	0.478	1.659	0.823	0.392	0.599	0.882	2.449
9177	chr3	24251491	24254573	+	0	NA	intron (NM_001326288, intron 5 of 13)	ORR1A0|LTR|ERVL-MaLR	530974	NM_001326288	635702	Mm.448351	NM_001326288	ENSMUSG00000102758	Naaladl2	2810043G22Rik|EG635702|Gm1021	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding	0.611	0.295	0.298	nan	0.683	0.281	nan	1.173	nan	0.607	0.694	1.179	0.538	0.665	nan	0.456	1.124	nan	4.922	4.553	2.228	3.020	4.702	3.095	0.336
15238	chr9	66856348	66865628	+	0	NA	intron (NM_173413, intron 2 of 7)	intron (NM_173413, intron 2 of 7)	-26282	NM_026674	68318	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	4.324	1.019	0.740	3.575	4.051	2.421	5.143	5.282	6.070	6.916	4.171	2.660	7.311	7.924	nan	6.536	3.490	6.312	nan	1.651	1.497	1.972	2.978	2.253	6.958
9706	chr3	108681176	108684872	+	0	NA	intron (NM_029522, intron 12 of 14)	intron (NM_029522, intron 12 of 14)	29034	NM_001177770	229725	Mm.214545	NM_145543	ENSMUSG00000027884	Clcc1	Mclc	chloride channel CLIC-like 1	protein-coding	5.672	6.968	4.975	3.812	3.354	1.591	3.644	3.480	2.991	3.473	5.711	2.768	3.589	4.979	nan	3.801	2.831	4.071	1.494	1.920	1.109	1.447	1.175	0.665	4.072
8032	chr2	26329507	26332655	+	0	NA	intron (NM_153410, intron 9 of 13)	(TTTG)n|Simple_repeat|Simple_repeat	11311	NM_001199147	67839	Mm.266611	NM_153410	ENSMUSG00000026930	Gpsm1	1810037C22Rik|AW107933|Ags3	G-protein signalling modulator 1 (AGS3-like, C. elegans)	protein-coding	4.689	1.273	0.701	7.500	1.237	0.832	1.509	4.173	2.894	3.060	2.726	0.985	2.410	3.034	3.187	4.090	1.629	4.563	0.859	0.491	0.423	1.858	0.548	0.304	5.726
12881	chr6	147898533	147905616	+	0	NA	Intergenic	L1Md_T|LINE|L1	-145342	NM_001347516	330450	Mm.447274	NM_178797	ENSMUSG00000030303	Far2	A230046P18|AW048109|BC055759|Mlstd1	fatty acyl CoA reductase 2	protein-coding	nan	0.961	0.720	nan	1.436	0.973	7.221	7.738	2.513	nan	1.577	1.439	5.232	5.436	6.460	nan	5.486	3.701	0.920	nan	0.606	nan	0.593	0.650	nan
8197	chr2	35735723	35741944	+	0	NA	Intergenic	Intergenic	42101	NM_001290639	69601	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	5.248	0.822	0.521	1.718	2.409	1.109	6.666	5.567	2.457	nan	1.108	0.661	5.618	6.886	4.941	5.446	3.584	2.934	1.363	0.555	0.404	0.812	0.739	0.568	8.658
3071	chr11	118943349	118949431	+	0	NA	Intergenic	Intergenic	-34793	NM_001285437	52897	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	7.133	8.508	3.969	6.591	4.803	3.189	7.671	7.121	3.683	7.952	4.242	2.830	5.622	8.807	6.536	7.947	6.043	nan	4.158	nan	4.039	4.345	2.963	3.924	9.940
3272	chr12	33852635	33862939	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-70638	NM_033522	114712	Mm.204643	NM_033522	ENSMUSG00000046518	Ferd3l	Mnato3|N-twist|Nato|Nato3|Ntwist|Ptfb|bHLHa31|fer3	Fer3-like (Drosophila)	protein-coding	9.872	7.687	3.091	5.167	5.381	3.130	6.990	6.035	nan	6.879	4.002	1.611	7.842	9.241	7.123	8.755	6.987	7.578	nan	0.873	0.787	1.047	0.779	0.663	12.209
12144	chr6	34294156	34306111	+	0	NA	Intergenic	L1MC3|LINE|L1	17310	NR_037965	626009	Mm.451	NR_028277		Gm6644	Akr1b3p|EG626009	Akr1b3 pseudogene	pseudo	4.860	0.672	0.565	2.232	3.201	1.977	5.904	7.702	2.587	2.553	3.011	1.776	5.051	5.289	4.399	nan	5.258	nan	nan	0.683	0.820	nan	nan	0.940	nan
11090	chr5	28696741	28698021	+	0	NA	intron (NR_015562, intron 4 of 6)	L1MB8|LINE|L1	-230280	NM_009170	20423	Mm.57202	NM_009170	ENSMUSG00000002633	Shh	9530036O11Rik|Dsh|Hhg1|Hx|Hxl3|M100081	sonic hedgehog	protein-coding	0.790	0.641	0.832	nan	1.061	0.743	3.222	1.518	2.369	2.338	0.657	0.563	1.156	3.149	4.966	2.686	2.952	1.932	1.044	0.931	0.337	0.540	0.780	0.464	0.673
8287	chr2	60692925	60696805	+	0	NA	intron (NM_001159564, intron 1 of 17)	intron (NM_001159564, intron 1 of 17)	-21172	NM_021359	16420	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	4.701	1.150	0.603	3.659	0.971	0.566	1.992	2.636	3.293	3.043	3.671	1.598	2.543	2.723	3.267	3.765	3.442	6.278	1.568	0.754	0.227	1.372	0.667	0.575	5.191
5384	chr15	77683952	77689506	+	0	NA	Intergenic	IAPEY4_I-int|LTR|ERVK	-12160	NM_001134802	666348	Mm.303207	NM_001134802	ENSMUSG00000071716	Apol7e	ENSMUSG00000071716	apolipoprotein L 7e	protein-coding	nan	nan	0.798	nan	4.140	2.646	10.473	12.163	5.288	5.007	4.171	2.056	10.344	10.062	10.162	8.571	7.748	7.702	3.899	2.961	2.421	nan	3.274	2.938	7.461
1939	chr11	5912956	5921116	+	0	NA	intron (NM_010292, intron 1 of 9)	B4A|SINE|B4	-1901	NM_001287386	103988	Mm.220358	NM_010292	ENSMUSG00000041798	Gck	GLK|Gk|Gls006|HK4|HKIV|HXKP|Hlb62|MODY2	glucokinase	protein-coding	nan	4.007	1.496	1.739	0.597	0.287	1.817	0.297	0.261	0.424	0.287	0.144	1.705	5.771	0.489	0.609	0.246	0.497	2.232	nan	0.796	3.502	1.235	0.889	0.565
14733	chr8	125179684	125180937	+	0	NA	intron (NM_174854, intron 9 of 12)	intron (NM_174854, intron 9 of 12)	126115	NM_174854	244667	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	4.014	nan	0.820	3.275	3.917	1.960	3.365	1.782	3.006	3.546	1.247	1.103	2.917	3.511	2.157	4.630	4.875	3.506	3.323	7.408	4.560	3.513	4.613	3.185	4.524
10512	chr4	125773112	125774817	+	0	NA	Intergenic	ORR1A4-int|LTR|ERVL-MaLR	148346	NR_015560	72395	Mm.112888	NR_015560	ENSMUSG00000085562	2610028E06Rik	BB043107	RIKEN cDNA 2610028E06 gene	ncRNA	6.074	5.873	2.811	6.044	4.026	4.254	5.144	5.143	5.736	4.873	3.187	2.592	4.853	6.506	5.291	6.759	3.365	5.631	3.702	2.627	5.268	4.298	3.158	4.360	7.453
9773	chr3	122223662	122224967	+	0	NA	Intergenic	Intergenic	-21243	NM_008129	14630	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	3.908	1.157	0.453	2.073	2.002	0.688	3.901	6.116	3.231	1.599	8.832	4.000	3.191	4.101	2.596	1.904	1.839	3.629	0.796	1.991	1.072	0.803	1.432	0.778	2.437
5054	chr15	11917006	11920332	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-11298	NM_001286395	18162	Mm.25259	NM_008728	ENSMUSG00000022206	Npr3	ANP-C|ANPR-C|EF-2|NPR-C|lgj|stri	natriuretic peptide receptor 3	protein-coding	7.606	1.066	0.371	3.089	4.444	1.897	10.257	11.892	3.693	4.629	2.589	2.126	10.997	8.126	6.576	6.521	8.917	6.003	0.757	1.059	0.560	0.724	1.278	0.497	3.764
13160	chr7	51948095	51953430	+	0	NA	intron (NM_008087, intron 6 of 7)	intron (NM_008087, intron 6 of 7)	54952	NR_027704	75744	Mm.386823	NM_001160345	ENSMUSG00000074093	Svip	1700006C13Rik|6620401M08Rik	small VCP/p97-interacting protein	protein-coding	5.453	0.646	0.371	3.982	5.187	3.840	6.540	10.632	4.039	4.859	2.032	1.889	6.452	10.005	5.772	6.930	5.222	6.472	0.732	0.834	0.584	0.751	1.133	0.699	6.175
14371	chr8	81883557	81885771	+	0	NA	intron (NM_001024617, intron 9 of 24)	intron (NM_001024617, intron 9 of 24)	517922	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	2.510	nan	0.794	1.516	1.556	1.178	2.244	nan	nan	1.252	0.715	0.710	2.958	1.461	1.652	2.756	1.658	1.520	4.269	4.551	3.523	8.591	2.722	2.101	nan
12212	chr6	48778034	48781417	+	0	NA	Intergenic	IAPEY4_I-int|LTR|ERVK	-8874	NM_031247	83408	Mm.333050	NM_031247	ENSMUSG00000039264	Gimap3	2010110D23Rik|Gimap5|Ian4	GTPase, IMAP family member 3	protein-coding	9.358	4.025	2.441	5.478	6.186	3.131	9.968	8.148	4.150	4.586	3.969	2.617	9.434	9.133	5.515	7.858	6.509	7.772	3.163	3.555	2.128	2.981	2.882	2.183	4.015
6090	chr16	45370231	45373030	+	0	NA	Intergenic	Intergenic	37423	NM_010818	17470	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	7.992	1.704	1.547	3.338	3.845	2.983	4.129	3.160	3.564	3.496	1.806	1.423	3.256	4.309	2.660	3.916	3.427	4.772	1.145	2.122	1.723	0.910	0.941	1.046	2.949
5853	chr16	18883276	18885558	+	0	NA	intron (NM_010435, intron 1 of 24)	B2_Mm1a|SINE|B2	7667	NM_010435	15260	Mm.15694	NM_010435	ENSMUSG00000022702	Hira	AA138857|D16Ertd95e|Gm15797|N28177|OTTMUSG00000026264|Tuple1	histone cell cycle regulator	protein-coding	3.659	2.705	2.969	1.741	2.729	3.127	1.591	1.477	2.524	2.436	0.707	0.905	2.785	4.069	1.384	nan	3.541	2.200	0.625	1.019	1.343	0.531	0.892	1.144	2.446
5784	chr16	10496386	10502061	+	0	NA	intron (NM_001302619, intron 2 of 19)	ID4|SINE|ID	9442	NM_001243761	12265	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	5.531	5.136	3.661	2.586	1.647	1.130	nan	3.710	2.620	3.395	0.714	0.848	2.632	2.891	2.539	3.939	2.126	4.691	0.727	1.167	0.998	0.849	0.783	0.600	6.958
15266	chr9	70676236	70678008	+	0	NA	Intergenic	MIR|SINE|MIR	-1860	NM_007399	11487	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	4.002	4.373	1.617	2.029	1.719	0.909	6.017	5.756	3.024	3.029	3.175	3.172	5.105	3.739	nan	5.793	2.054	3.582	1.893	1.286	0.692	1.143	4.376	2.417	2.679
9356	chr3	62765793	62771491	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-163502	NM_177346	229357	Mm.95181	NM_177346	ENSMUSG00000043441	Gpr149	9630018L10Rik|Ieda|PGR10|R35	G protein-coupled receptor 149	protein-coding	4.356	0.384	0.409	nan	6.683	4.714	0.646	1.240	3.220	4.289	0.426	0.622	1.346	3.606	nan	nan	3.943	nan	0.475	0.711	0.882	0.373	0.569	0.938	2.365
10750	chr4	137464313	137466465	+	0	NA	Intergenic	Intergenic	-3414	NM_008305	15530	Mm.273662	NM_008305	ENSMUSG00000028763	Hspg2	AI852380|Pcn|Plc|per	perlecan (heparan sulfate proteoglycan 2)	protein-coding	nan	1.687	1.380	5.189	5.222	3.209	6.754	5.345	nan	4.366	5.938	1.976	6.011	8.534	7.051	8.068	3.666	nan	2.495	1.106	1.265	1.056	nan	1.337	11.404
67	chr1	31106205	31109691	+	0	NA	Intergenic	L1MA6|LINE|L1	-11494	NR_136907	102634473	Mm.484482	NR_136907	ENSMUSG00000100371	Gm29669	-	predicted gene 29669	ncRNA	9.039	nan	0.399	5.177	3.603	1.199	3.561	6.197	7.828	9.353	1.659	2.498	9.145	7.310	5.615	8.551	7.287	9.055	0.611	0.649	0.098	2.230	0.279	0.108	3.799
3335	chr12	56097970	56101093	+	0	NA	Intergenic	B3|SINE|B2	-153712	NR_045048	100503961	Mm.136732	NR_045048		Gm19990	-	predicted gene, 19990	ncRNA	3.516	11.246	6.014	2.169	1.132	0.820	2.417	3.912	2.228	2.236	3.365	2.203	2.130	2.517	nan	2.706	1.817	2.575	0.571	1.058	0.737	0.726	0.793	0.321	2.864
3636	chr12	101422712	101427387	+	0	NA	intron (NM_173023, intron 5 of 26)	L1MA6|LINE|L1	20376	NM_173023	271036	Mm.84218	NM_173023	ENSMUSG00000047014	Catsperb	4931410B03|4932415G16Rik	catsper channel auxiliary subunit beta	protein-coding	11.935	11.545	4.305	8.107	3.382	2.181	7.015	8.208	6.279	7.113	4.523	3.848	9.600	10.551	9.870	10.991	10.440	9.428	4.954	2.984	1.840	4.907	2.755	2.214	12.487
3133	chr11	121120532	121122362	+	0	NA	Intergenic	MTE2b|LTR|ERVL-MaLR	-2770	NM_027622	70956	Mm.158506	NM_027622	ENSMUSG00000039337	Tex19.2	4921530G04Rik|Tex19b	testis expressed gene 19.2	protein-coding	5.940	11.899	3.602	8.655	3.343	1.861	4.828	nan	5.406	12.987	5.317	3.194	4.751	5.738	7.532	8.944	4.323	7.718	5.079	nan	3.692	7.037	2.633	3.095	12.175
7394	chr18	75421261	75425041	+	0	NA	Intergenic	Intergenic	55786	NM_001042660	17131	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	4.090	6.506	2.568	2.714	1.411	0.704	5.008	6.345	3.078	3.041	0.756	0.854	8.605	4.858	5.040	7.728	4.770	5.324	1.168	nan	0.324	1.057	0.323	0.407	7.663
6112	chr16	49853782	49861137	+	0	NA	intron (NM_010581, intron 1 of 9)	intron (NM_010581, intron 1 of 9)	1805	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	11.449	11.796	4.972	8.506	5.422	3.132	7.043	9.005	6.552	9.534	5.882	3.237	9.296	10.198	8.541	10.914	7.731	11.119	5.417	3.603	2.839	5.345	3.642	3.284	10.923
327	chr1	76013832	76016564	+	0	NA	Intergenic	Intergenic	468932	NM_009208	20536	Mm.5053	NM_009208	ENSMUSG00000006576	Slc4a3	A930038D23Rik|Ae3	solute carrier family 4 (anion exchanger), member 3	protein-coding	5.154	0.254	0.145	2.065	3.848	1.777	7.815	3.382	5.033	6.694	2.197	0.798	6.527	5.354	5.336	12.168	7.563	5.635	nan	nan	0.127	0.455	nan	0.316	4.013
14395	chr8	86099541	86109581	+	0	NA	Intergenic	Lx6|LINE|L1	263559	NM_199446	102093	Mm.237296	NM_199446	ENSMUSG00000036879	Phkb	AI463271	phosphorylase kinase beta	protein-coding	0.728	0.931	0.374	0.870	0.632	0.339	1.074	2.216	nan	0.773	0.959	0.482	0.972	0.966	1.572	2.425	1.818	1.055	nan	1.569	1.522	5.320	0.480	0.355	1.392
10666	chr4	133806546	133809985	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	-54654	NM_001080819	93760	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	3.229	1.454	0.374	5.156	1.368	0.426	1.677	1.257	2.073	3.131	1.162	0.435	0.913	1.949	2.063	3.005	1.068	3.264	1.272	0.996	0.366	1.873	nan	0.832	4.846
8964	chr2	164346981	164349473	+	0	NA	Intergenic	L1_Mus1|LINE|L1	6156	NR_106143	102465780		NR_106143	ENSMUSG00000098489	Mir7678	Gm27388|mmu-mir-7678	microRNA 7678	ncRNA	4.990	3.480	1.169	6.035	2.888	1.756	10.306	6.453	3.131	4.459	5.746	3.081	7.030	8.122	6.707	5.637	3.944	5.250	nan	2.154	1.616	2.082	4.404	3.020	10.318
1281	chr10	51933952	51941001	+	0	NA	Intergenic	MTE2a|LTR|ERVL-MaLR	-85026	NM_001300957	215031	Mm.87237	NM_153786	ENSMUSG00000049641	Vgll2	C130057C21Rik|VITO-1|Vito1|vgl-2	vestigial like family member 2	protein-coding	7.284	nan	0.538	1.995	3.794	2.097	7.359	3.480	3.721	3.376	2.029	1.657	5.849	6.682	5.097	5.368	6.504	4.156	nan	0.717	0.558	0.350	0.762	0.565	5.672
14684	chr8	122714249	122715688	+	0	NA	Intergenic	Intergenic	-15859	NM_009824	12398	Mm.194339	NM_009824	ENSMUSG00000006362	Cbfa2t3	A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2	core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	protein-coding	3.523	1.529	0.454	3.585	1.183	1.126	6.150	7.320	1.566	4.236	0.807	1.082	7.232	6.285	5.851	9.015	4.198	3.336	5.545	2.793	2.882	8.610	1.514	1.807	10.262
14223	chr8	48075845	48077071	+	0	NA	Intergenic	L2c|LINE|L2	-22634	NM_001161516	320685	Mm.121549	NM_178788	ENSMUSG00000031562	Dctd	6030466N05Rik	dCMP deaminase	protein-coding	4.821	1.699	0.215	1.663	1.414	0.937	4.678	6.360	4.851	4.973	6.061	2.464	6.695	3.777	4.110	4.796	4.656	5.838	0.576	0.320	0.074	1.027	0.247	0.080	3.293
13112	chr7	31661590	31667686	+	0	NA	Intergenic	ETnERV2-int|LTR|ERVK	41116	NM_001198871	100043836	Mm.296883	NM_001198871	ENSMUSG00000094053	Scgb2b7	Abpbg7|Gm4684	secretoglobin, family 2B, member 7	protein-coding	1.762	10.838	7.116	0.862	0.691	0.354	0.977	0.989	0.627	1.048	0.505	0.428	0.347	0.658	0.728	0.886	0.811	0.848	0.550	1.433	1.126	0.660	0.662	0.469	1.145
12003	chr5	151867037	151869268	+	0	NA	Intergenic	Intergenic	-216944	NM_027009	69263	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	6.597	0.858	0.402	nan	7.402	4.052	3.702	3.391	4.757	5.754	2.057	1.712	3.971	7.440	4.065	4.626	3.618	6.268	1.210	1.805	1.260	1.375	1.325	1.396	3.337
3214	chr12	17733305	17742954	+	0	NA	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	47315	NM_016677	53602	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	3.654	1.621	0.624	4.455	3.645	1.873	6.536	4.925	3.975	4.225	2.087	2.199	5.824	7.162	5.520	5.814	3.933	6.299	1.049	0.811	0.653	1.389	0.743	0.575	6.297
4554	chr14	26556973	26561276	+	0	NA	Intergenic	Intergenic	-14734	NM_001285467	211922	Mm.260512	NM_145969	ENSMUSG00000040818	Dennd6a	Fam116a	DENN/MADD domain containing 6A	protein-coding	1.116	0.979	0.364	1.435	0.369	0.032	0.535	1.531	0.739	0.896	0.617	0.603	0.724	0.779	0.918	nan	nan	nan	1.728	1.258	1.681	4.460	0.829	0.674	1.968
12913	chr7	4946612	4949331	+	0	NA	Intergenic	Intergenic	16377	NM_001146329	381836	Mm.297829	NM_001146329	ENSMUSG00000030433	Sbk2	Gm1079|Sgk069	SH3-binding domain kinase family, member 2	protein-coding	5.438	2.390	1.425	4.617	4.103	2.239	6.609	5.354	3.421	4.820	3.120	1.877	5.311	7.819	4.151	5.594	5.365	4.993	3.111	2.977	2.527	3.286	3.395	2.813	7.946
6307	chr17	6005057	6008902	+	0	NA	promoter-TSS (NM_001290698)	promoter-TSS (NM_001290698)	-601	NM_001290698	20975	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	6.649	4.046	1.308	7.239	2.642	1.377	5.389	5.250	3.884	4.965	5.790	4.102	4.758	6.316	7.454	8.005	5.302	6.041	nan	1.259	1.052	2.459	1.427	0.909	10.022
1603	chr10	92774982	92776752	+	0	NA	3' UTR (NM_001347060, exon 68 of 68)	3' UTR (NM_001347060, exon 68 of 68)	-53449	NM_008682	17997	Mm.2998	NM_008682	ENSMUSG00000019988	Nedd1	-	neural precursor cell expressed, developmentally down-regulated gene 1	protein-coding	2.359	2.226	0.899	2.400	3.016	1.575	1.422	1.403	2.720	2.680	1.934	1.483	2.807	5.280	2.684	3.330	1.755	2.676	0.689	0.697	0.507	nan	nan	0.536	2.604
1881	chr11	3107828	3112120	+	0	NA	Intergenic	IAPLTR3-int|LTR|ERVK	-14047	NR_003517	236604	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	nan	1.182	1.368	1.535	6.075	4.915	2.391	2.376	1.780	1.740	0.864	1.009	1.339	1.721	1.126	0.965	1.297	1.527	0.964	nan	1.336	0.536	1.368	1.112	0.542
4403	chr13	110928475	110930989	+	0	NA	Intergenic	Intergenic	-25886	NR_131194	102636142	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	nan	nan	0.458	0.419	0.407	0.126	0.419	0.608	nan	nan	0.155	0.202	0.198	0.486	0.542	0.738	0.370	nan	3.597	5.090	1.599	5.736	4.750	2.537	0.529
14920	chr9	22233946	22235666	+	0	NA	intron (NM_172763, intron 1 of 5)	intron (NM_172763, intron 1 of 5)	9094	NM_001164624	235047	Mm.290849	NM_172763	ENSMUSG00000057982	Zfp809	BB114266|C330026E23	zinc finger protein 809	protein-coding	3.135	1.951	0.520	1.374	0.902	0.644	3.345	2.744	2.393	2.764	0.635	0.694	3.513	3.682	3.470	3.615	3.602	2.558	3.664	4.073	4.346	5.096	1.986	1.992	3.256
11584	chr5	114318077	114326957	+	0	NA	intron (NM_001164573, intron 4 of 30)	B2_Mm2|SINE|B2	7576	NM_001164573	231646	Mm.238285	NM_146163	ENSMUSG00000066952	Myo1h	4631401O15Rik	myosin 1H	protein-coding	2.810	1.844	0.484	3.771	1.611	0.861	1.606	2.256	2.242	2.487	2.092	1.480	1.508	2.438	2.795	2.860	1.255	2.957	5.885	nan	1.693	5.428	nan	1.984	3.442
5833	chr16	17170318	17171588	+	0	NA	intron (NM_009456, intron 2 of 3)	intron (NM_009456, intron 2 of 3)	-23724	NM_001306169	76872	Mm.101656	NM_029779	ENSMUSG00000022768	Ccdc116	4930432J16Rik	coiled-coil domain containing 116	protein-coding	3.858	0.784	0.792	0.770	3.675	2.327	3.933	3.639	2.114	nan	2.017	2.185	2.067	3.727	1.369	nan	3.394	1.677	0.938	2.478	1.734	0.459	2.019	1.596	1.399
13476	chr7	106285009	106297607	+	0	NA	Intergenic	L1Md_F2|LINE|L1	33220	NR_030720	668128	Mm.484022	NR_030720		Gm8989	EG668128|Gm21911	very large inducible GTPase 1 pseudogene	pseudo	5.080	11.795	6.882	4.278	3.872	2.406	4.159	4.416	2.505	3.886	2.078	1.320	2.715	5.300	3.869	nan	3.758	nan	nan	1.682	1.850	1.394	1.374	1.088	5.361
14798	chr8	128531209	128533602	+	0	NA	Intergenic	Intergenic	-153249	NM_010578	16412	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|ENSMUSG00000051907|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	1.751	nan	0.315	nan	0.912	0.230	nan	3.626	1.629	1.490	1.004	1.887	1.286	1.235	nan	1.943	1.292	nan	5.832	4.894	3.909	9.685	4.845	nan	1.826
14552	chr8	108657182	108665244	+	0	NA	Intergenic	(CATA)n|Simple_repeat|Simple_repeat	-53431	NM_007496	11906	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	10.556	1.490	0.673	7.080	5.019	3.116	8.057	11.772	6.696	9.523	6.808	4.021	10.957	11.380	9.616	13.014	7.932	9.924	4.483	2.673	1.969	8.434	2.877	2.652	15.168
2049	chr11	30061431	30065302	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-37333	NM_146016	237711	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding	3.469	1.133	0.569	5.180	2.258	1.042	1.329	2.207	2.377	2.202	1.426	1.125	1.098	1.555	2.665	3.349	nan	3.911	1.259	0.914	0.756	1.443	0.579	0.319	1.892
3197	chr12	15935801	15936896	+	0	NA	Intergenic	Intergenic	-119563	NM_144551	217410	Mm.491136	NM_144551	ENSMUSG00000020601	Trib2	AW319517|TRB-2|TRB2	tribbles pseudokinase 2	protein-coding	3.702	0.899	0.278	1.913	2.210	0.641	2.291	3.358	2.500	3.273	1.308	0.907	2.286	3.366	4.771	5.278	5.705	3.433	0.765	0.757	0.336	0.848	0.466	0.441	4.321
11398	chr5	89152706	89154001	+	0	NA	intron (NM_001197147, intron 13 of 25)	intron (NM_001197147, intron 13 of 25)	266093	NM_018760	54403	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	3.507	0.911	1.291	2.178	3.805	4.017	3.976	3.968	3.138	2.326	2.087	2.478	2.719	3.656	4.166	3.072	2.765	2.983	1.575	0.891	0.973	1.379	1.617	0.921	2.257
8336	chr2	70891766	70894674	+	0	NA	Intergenic	Intergenic	-67740	NM_172664	228012	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	6.429	9.268	3.470	7.398	1.114	0.540	4.915	5.452	3.831	6.057	3.610	3.321	9.354	6.417	7.948	8.401	5.202	7.909	3.985	1.905	1.096	4.500	1.778	1.311	11.128
14164	chr8	37670817	37677808	+	0	NA	intron (NM_145841, intron 3 of 7)	L1Md_F2|LINE|L1	577890	NR_029884	723860		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA	6.185	1.629	0.541	9.231	3.832	2.114	4.426	4.842	3.989	5.395	2.204	1.024	7.006	7.440	6.709	8.391	4.982	7.043	0.725	0.951	0.560	0.924	0.493	0.339	nan
4241	chr13	72584526	72588150	+	0	NA	Intergenic	Intergenic	42226	NR_030701	328287	Mm.235072	NR_030701		Gm20554	D430050G20	predicted gene, 20554	ncRNA	0.329	0.316	0.218	0.282	0.171	0.230	0.316	0.504	0.545	0.386	0.349	0.222	0.107	0.280	0.317	nan	0.281	0.479	3.485	3.757	2.938	5.154	4.143	2.837	0.360
1558	chr10	85762845	85766030	+	0	NA	Intergenic	Intergenic	-107394	NM_133993	103136	Mm.18834	NM_133993	ENSMUSG00000001785	Pwp1	2310058A11Rik|2610205J09Rik|AI098170|AL022879|AV083409|AW550690	PWP1 homolog, endonuclein	protein-coding	9.384	1.887	0.360	9.783	6.250	4.187	7.308	7.020	5.705	6.749	2.377	1.084	5.380	8.726	6.819	9.375	7.819	8.344	2.262	1.803	1.208	nan	nan	1.132	15.122
10800	chr4	140184178	140187135	+	0	NA	intron (NM_198610, intron 1 of 9)	intron (NM_198610, intron 1 of 9)	61155	NM_198610	230868	Mm.298731	NM_198610	ENSMUSG00000040972	Igsf21	BC055811|Gm141	immunoglobulin superfamily, member 21	protein-coding	2.727	1.031	0.353	2.624	4.313	2.093	5.420	2.622	nan	1.618	3.138	0.805	3.197	5.141	3.354	4.512	1.494	nan	0.956	0.850	0.622	0.767	nan	1.138	4.763
3370	chr12	60228514	60234543	+	0	NA	Intergenic	MTE-int|LTR|ERVL-MaLR	-1012045	NM_001033156	70611	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	9.542	nan	2.043	6.890	4.942	3.093	6.810	6.298	5.086	7.587	4.331	2.816	8.735	9.798	nan	8.855	7.957	nan	2.229	1.907	1.371	2.474	2.052	2.014	10.397
5422	chr15	79175110	79185522	+	0	NA	intron (NR_029470, intron 2 of 4)	B4A|SINE|B4	14250	NR_029470	100041655	Mm.483310	NR_029470	ENSMUSG00000075555	Gm10863	ENSMUSG00000075555	predicted gene 10863	ncRNA	5.042	nan	1.398	nan	3.925	2.114	nan	9.600	3.644	5.047	nan	2.232	4.816	5.243	4.871	5.743	3.493	5.135	3.436	1.847	2.020	nan	3.241	3.000	5.497
5239	chr15	60997580	60998667	+	0	NA	Intergenic	Intergenic	-76853	NM_001081067	117586	Mm.291499	NM_001081067	ENSMUSG00000022347	A1bg	C44	alpha-1-B glycoprotein	protein-coding	3.048	0.560	0.368	nan	0.420	0.511	4.680	4.206	2.382	nan	4.024	3.782	5.000	3.327	3.616	2.387	2.002	3.323	0.691	0.862	0.093	0.719	0.733	0.286	0.851
5794	chr16	10989434	10993216	+	0	NA	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	1796	NM_019980	56722	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	11.858	6.301	1.829	8.127	4.667	2.268	7.659	10.193	5.836	7.748	6.158	3.881	9.895	10.057	7.988	11.112	5.305	9.384	4.434	2.960	3.172	5.570	3.578	2.972	13.500
5782	chr16	10463896	10467853	+	0	NA	Intergenic	Intergenic	-14198	NM_001302619	12265	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	8.232	1.485	1.517	3.154	7.726	4.753	7.173	5.922	5.499	5.584	2.504	1.443	7.122	8.715	4.593	7.505	4.453	6.072	0.665	1.189	0.691	0.644	0.869	0.533	6.812
4881	chr14	78001620	78004760	+	0	NA	TTS (NM_029495)	TTS (NM_029495)	85817	NM_177629	219170	Mm.320428	NM_177629	ENSMUSG00000045655	Fam216b	9330158N17|AU021034	family with sequence similarity 216, member B	protein-coding	0.276	0.502	0.406	0.190	0.074	0.117	0.261	0.276	0.391	0.293	0.278	0.064	0.143	nan	0.324	0.548	0.195	0.352	6.274	2.150	1.419	4.805	5.523	3.221	0.665
11983	chr5	149861746	149864599	+	0	NA	intron (NR_045758, intron 3 of 3)	intron (NR_045758, intron 3 of 3)	15425	NR_045758	70969	Mm.78499	NR_045758	ENSMUSG00000107214	4930500F04Rik	4931407C17Rik	RIKEN cDNA 4930500F04 gene	ncRNA	8.900	15.983	6.412	10.554	7.093	6.536	11.477	7.607	5.638	19.775	8.168	5.395	7.214	10.830	8.884	8.441	8.105	10.175	5.630	2.781	5.848	4.666	3.973	8.737	13.125
10387	chr4	114137973	114142662	+	0	NA	Intergenic	IAPEz-int|LTR|ERVK	-23067	NM_177669	230623	Mm.124482	NM_177669	ENSMUSG00000057977	Skint11	A630098G03Rik|Gm569	selection and upkeep of intraepithelial T cells 11	protein-coding	2.222	0.680	0.359	0.439	0.243	0.078	3.923	2.196	0.745	0.686	0.336	0.345	2.899	3.941	4.170	4.590	1.746	1.542	0.766	0.386	0.310	0.613	0.293	0.149	3.826
10452	chr4	119688443	119692541	+	0	NA	Intergenic	Intergenic	-31547	NM_008191	14916	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	0.514	1.552	0.555	0.520	0.108		0.284	0.213	0.529	0.494	0.134	0.293	0.280	0.257	0.440	nan	0.267	0.702	3.551	1.800	1.247	6.745	2.231	1.421	0.865
14782	chr8	127385836	127399439	+	0	NA	intron (NM_001309391, intron 14 of 24)	intron (NM_001309391, intron 14 of 24)	92985	NM_001013580	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	6.495	nan	1.331	nan	4.721	3.248	6.697	8.403	5.246	7.564	2.694	1.684	9.444	9.695	8.023	10.137	7.506	6.133	nan	1.151	1.239	nan	1.139	nan	9.583
15057	chr9	48624927	48625930	+	0	NA	Intergenic	L1_Mus3|LINE|L1	-20305	NM_010924	18113	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	2.921	6.946	2.280	4.242	2.427	1.057	0.687	2.292	2.519	4.084	1.041	1.304	1.641	3.671	nan	2.415	0.786	5.295	3.063	1.136	0.780	nan	2.398	1.486	2.959
8117	chr2	31863658	31865514	+	0	NA	Intergenic	Intergenic	-18581	NM_178887	98970	Mm.32080	NM_178887	ENSMUSG00000026841	Fibcd1	AI448887	fibrinogen C domain containing 1	protein-coding	6.820	5.724	5.845	1.798	2.222	1.174	5.325	3.861	2.767	3.044	0.795	0.820	4.282	2.961	3.672	5.080	7.588	4.154	1.490	0.643	1.090	0.537	1.130	1.177	6.313
6809	chr17	67524488	67526081	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	107439	NM_001033340	240131	Mm.295736	NM_001033340	ENSMUSG00000073375	Lrrc30	Gm326	leucine rich repeat containing 30	protein-coding	2.100	0.461	0.162	1.701	1.941	1.218	3.061	2.456	nan	2.232	2.128	1.125	2.902	2.897	2.872	3.074	2.873	2.973	1.613	1.130	0.560	1.406	1.406	1.636	2.163
4468	chr14	9367343	9369054	+	0	NA	Intergenic	MTEa|LTR|ERVL-MaLR	-515897	NR_030680	100042415	Mm.235938	NR_030680		Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	3.570	0.396	0.452	1.457	1.261	0.191	2.099	2.752	1.519	1.623	1.318	0.408	2.531	3.785	2.793	3.273	3.188	2.426	0.645	1.302	0.349	0.664	0.800	0.335	2.342
159	chr1	51797284	51798799	+	0	NA	intron (NM_001290982, intron 9 of 28)	intron (NM_001290982, intron 9 of 28)	117937	NM_001290982	17912	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	6.781	1.010	0.578	3.637	1.788	0.976	4.205	7.062	2.255	2.862	1.381	0.328	3.966	3.766	3.683	5.556	3.854	4.278	nan	1.461	1.118	1.015	1.117	0.845	5.529
747	chr1	154643005	154644487	+	0	NA	intron (NM_009782, intron 3 of 46)	intron (NM_009782, intron 3 of 46)	82174	NM_009782	12290	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	2.928	1.899	0.987	1.523	1.727	0.363	2.486	1.775	nan	1.638	1.617	0.917	1.277	3.342	2.940	3.739	2.043	1.351	0.858	1.709	0.661	2.265	nan	0.384	2.237
10677	chr4	134210774	134214763	+	0	NA	intron (NM_001130030, intron 8 of 8)	(CA)n|Simple_repeat|Simple_repeat	-9764	NM_001080712	665186	Mm.318615	NM_001080712	ENSMUSG00000073747	Gm7534	EG665186	predicted gene 7534	protein-coding	nan	1.203	0.631	0.873	0.649	0.149	0.442	0.374	nan	0.509	0.504	0.376	0.208	0.525	0.441	0.637	0.287	nan	3.147	1.847	1.851	4.654	nan	2.152	1.084
12955	chr7	19512636	19514396	+	0	NA	intron (NR_138583, intron 1 of 4)	B4A|SINE|B4	4846	NM_025960	67091	Mm.44213	NM_025960	ENSMUSG00000002043	Trappc6a	1810073E21Rik|4930519D19Rik|AI480686|TRS33|mhyp	trafficking protein particle complex 6A	protein-coding	2.860	1.018	0.566	4.029	0.807	0.535	1.088	1.359	1.783	2.247	0.551	0.406	0.810	1.764	1.786	2.481	1.288	2.792	0.956	0.867	0.382	1.211	0.922	0.474	2.514
12219	chr6	50139036	50143023	+	0	NA	intron (NM_019939, intron 1 of 12)	intron (NM_019939, intron 1 of 12)	30788	NM_001164733	56524	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	2.619	1.712	1.170	1.818	2.075	0.626	2.737	3.705	2.522	2.627	0.731	0.622	4.605	4.594	3.441	3.078	3.298	4.063	nan	0.779	0.586	0.968	2.140	1.111	2.429
1633	chr10	94601762	94611067	+	0	NA	Intergenic	B4A|SINE|B4	-20215	NR_106070	102466817		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	5.546	1.963	0.924	4.433	2.902	1.422	1.347	1.832	2.607	2.464	nan	1.413	1.448	2.368	2.104	2.407	2.015	4.263	nan	3.496	2.713	nan	3.594	2.704	5.654
14522	chr8	107838497	107844364	+	0	NA	Intergenic	MTA_Mm-int|LTR|ERVL-MaLR	-252948	NM_010817	17463	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	4.447	1.032	0.468	3.891	2.755	1.099	3.903	4.181	4.420	5.842	0.994	0.562	5.929	8.413	5.805	7.739	5.169	6.975	1.553	2.065	1.460	nan	0.847	0.384	10.091
10367	chr4	108502941	108511297	+	0	NA	intron (NM_175472, intron 10 of 30)	intron (NM_175472, intron 10 of 30)	47693	NM_175472	230594	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	5.459	4.862	1.989	5.259	3.358	1.786	4.554	5.122	5.173	5.972	4.267	4.190	4.918	6.385	6.291	6.808	4.054	6.114	5.098	3.067	2.347	5.853	2.733	2.263	6.142
13934	chr7	151162677	151166923	+	0	NA	Intergenic	Intergenic	5849965	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	nan	nan	0.290	nan	0.360	0.277	4.967	5.955	nan	2.214	0.528	0.137	6.233	4.321	5.916	6.517	3.275	3.474	1.256	0.443	0.549	2.785	nan	0.481	8.158
4540	chr14	25588282	25591576	+	0	NA	non-coding (NR_033492, exon 1 of 1)	non-coding (NR_033492, exon 1 of 1)	3125	NR_033492	77592	Mm.444871	NM_175264		4931406H21Rik	-	RIKEN cDNA 4931406H21 gene	ncRNA	0.389	0.704	0.327	0.931	0.239	0.111	0.166	0.860	0.390	0.405	0.182	0.184	0.151	0.365	0.433	nan	nan	nan	7.362	2.129	1.153	nan	5.036	4.177	0.521
1942	chr11	6087624	6089402	+	0	NA	Intergenic	L1MDb|LINE|L1	-22765	NM_007595	12323	Mm.439733	NM_007595	ENSMUSG00000057897	Camk2b	CaMKII	calcium/calmodulin-dependent protein kinase II, beta	protein-coding	1.667	2.874	1.950	1.689	1.428	1.063	1.323	1.378	1.304	2.030	0.724	0.461	1.985	4.084	1.249	1.927	2.195	1.691	1.040	nan	0.511	2.053	0.746	0.814	1.379
1427	chr10	74777108	74780861	+	0	NA	Intergenic	Intergenic	-188247	NM_010311	14687	Mm.32595	NM_010311	ENSMUSG00000040009	Gnaz	AI847979|Gz	guanine nucleotide binding protein, alpha z subunit	protein-coding	2.144	5.850	1.175	nan	1.428	0.930	0.734	1.233	1.103	1.899	0.777	0.921	0.852	1.056	nan	1.617	0.867	2.090	nan	1.846	1.663	4.241	2.996	2.665	2.807
9701	chr3	108456065	108457667	+	0	NA	3' UTR (NM_001346518, exon 22 of 22)	3' UTR (NM_001346518, exon 22 of 22)	-11607	NM_001204979	20226	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	6.042	6.001	3.675	6.669	8.092	5.913	7.110	6.054	5.556	7.072	4.455	5.365	5.948	6.850	5.230	5.355	5.774	5.809	4.586	4.747	4.807	3.826	5.467	6.334	6.126
4217	chr13	63254411	63256037	+	0	NA	intron (NR_110520, intron 2 of 5)	intron (NR_110520, intron 2 of 5)	15195	NR_110521	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	4.471	1.100	0.628	3.522	3.518	3.012	2.937	3.118	3.166	3.088	1.773	0.904	2.527	4.549	2.605	nan	3.251	3.653	1.492	1.754	1.241	1.818	1.673	1.137	3.591
1484	chr10	79545602	79551045	+	0	NA	intron (NM_001316699, intron 6 of 13)	intron (NM_001316699, intron 6 of 13)	6805	NM_001316699	70427	Mm.334193	NM_027422	ENSMUSG00000042570	Mier2	2700087H15Rik|mKIAA1193	MIER family member 2	protein-coding	4.549	2.656	1.077	5.373	2.680	2.092	3.522	2.936	2.956	3.359	4.973	1.971	2.268	3.767	4.040	4.023	2.048	4.639	nan	1.309	1.636	4.854	1.303	1.559	5.485
1017	chr1	191600743	191604329	+	0	NA	intron (NM_001306204, intron 6 of 17)	intron (NM_001306204, intron 6 of 17)	26900	NM_001306204	77065	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	5.813	0.475	0.471	2.009	3.826	1.665	3.592	2.094	2.207	2.938	4.322	0.993	5.574	5.208	2.610	4.758	2.888	4.587	0.820	0.682	0.410	0.797	1.052	0.549	3.097
14377	chr8	83261403	83264151	+	0	NA	intron (NM_027758, intron 13 of 17)	intron (NM_027758, intron 13 of 17)	-27571	NM_009463	22227	Mm.4177	NM_009463	ENSMUSG00000031710	Ucp1	AI385626|Slc25a7|Ucp	uncoupling protein 1 (mitochondrial, proton carrier)	protein-coding	7.494	11.838	3.568	10.190	6.398	6.893	5.630	7.885	nan	8.341	4.357	3.551	6.817	6.756	9.001	10.195	6.000	8.336	nan	2.901	5.535	9.711	4.412	7.743	12.991
14039	chr8	13286203	13290621	+	0	NA	promoter-TSS (NM_001042649)	promoter-TSS (NM_001042649)	-286	NM_001042650	102323	Mm.368890	NM_001024504	ENSMUSG00000038506	Dcun1d2	AW495713|mFLJ10704	DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)	protein-coding	6.098	5.393	1.616	7.021	3.896	3.187	4.466	7.572	4.394	7.490	3.862	2.299	6.947	9.380	7.041	nan	7.190	6.110	4.756	3.664	3.298	6.892	3.914	3.895	10.360
2042	chr11	24034012	24036979	+	0	NA	Intergenic	Intergenic	-42561	NM_016707	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.531	5.874	4.214	nan	0.157	0.083	0.229	0.337	0.464	0.333	0.267	0.366	0.144	0.264	0.290	0.429	nan	0.471	0.472	0.650	0.213	0.325	0.235	0.097	0.305
1057	chr1	195249570	195251377	+	0	NA	Intergenic	RLTR11A|LTR|ERVK	-73758	NM_007758	12902	Mm.235387	NM_007758	ENSMUSG00000026616	Cr2	C3DR|CD21|CD35|Cr-1|Cr-2|Cr1	complement receptor 2	protein-coding	6.689	1.260	0.452	0.477	0.504	0.360	10.224	4.607	2.865	1.653	0.632	1.337	7.054	3.885	4.418	8.444	4.333	3.905	2.198	1.284	0.779	1.345	4.686	3.501	6.992
15557	chr9	116924450	116932747	+	0	NA	intron (NM_001172122, intron 4 of 13)	intron (NM_001172122, intron 4 of 13)	323885	NM_001172123	207181	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding	3.505	0.607	0.511	1.300	1.638	0.916	4.553	4.442	2.294	1.756	8.574	4.953	3.228	2.167	1.871	1.967	1.521	2.147	0.666	0.566	0.436	0.460	nan	0.656	1.676
5375	chr15	77032391	77037940	+	0	NA	intron (NM_013593, intron 1 of 3)	intron (NM_013593, intron 1 of 3)	-9910	NM_001163621	71939	Mm.34173	NM_028010	ENSMUSG00000033576	Apol6	2310076O14Rik	apolipoprotein L 6	protein-coding	3.208	nan	0.166	nan	1.481	0.959	3.382	8.794	1.703	nan	4.862	3.449	3.200	nan	3.721	2.450	nan	2.892	1.766	1.427	0.874	nan	1.958	1.263	2.254
3748	chr12	112942972	112944421	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-1554	NM_001316724	66174	Mm.7070	NM_025399	ENSMUSG00000002804	Nudt14	1110030M18Rik|UGPPase	nudix (nucleoside diphosphate linked moiety X)-type motif 14	protein-coding	3.190	1.058	0.261	7.586	2.361	1.475	2.692	4.868	2.602	3.961	3.782	1.460	3.352	4.390	2.650	3.244	2.288	3.620	3.440	2.121	1.275	5.078	2.105	1.292	4.389
6785	chr17	65991206	65994249	+	0	NA	intron (NM_001025572, intron 8 of 12)	Lx2B2|LINE|L1	-41540	NM_023053	65960	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	5.608	0.589	0.544	8.256	5.501	1.750	9.560	5.675	6.064	8.435	1.992	1.948	7.568	12.270	10.502	11.886	5.907	11.899	1.199	0.874	0.325	1.876	0.921	0.665	13.305
9816	chr3	133287676	133290162	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-21191	NM_001293641	74776	Mm.210305	NM_146141	ENSMUSG00000028013	Ppa2	1110013G13Rik|Sid6306	pyrophosphatase (inorganic) 2	protein-coding	1.084	nan	0.509	0.628	1.614	1.368	nan	1.934	0.988	0.657	5.156	3.810	1.333	1.816	0.902	0.914	0.888	0.679	0.626	0.673	0.568	0.574	0.504	0.614	0.597
15383	chr9	90154253	90155983	+	0	NA	Intergenic	Intergenic	-7860	NM_001003911	108153	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	4.184	5.478	1.456	3.960	0.765	0.277	3.906	2.269	2.411	1.881	2.724	1.235	4.178	3.507	3.934	5.843	2.391	4.151	1.085	0.556	0.317	2.173	0.467	0.166	6.467
9500	chr3	93248282	93249496	+	0	NA	Intergenic	MurERV4-int|LTR|ERVK	51616	NM_001013804	229574	Mm.10755	NM_001013804		Flg2	EG229574	filaggrin family member 2	protein-coding	2.580	1.621	0.632	3.834	1.007	0.207	3.037	4.141	1.124	2.558	1.207	1.394	1.106	3.672	4.046	2.197	1.186	3.620	0.528	0.701	0.795	0.825	0.624	0.582	4.553
15231	chr9	66505037	66508749	+	0	NA	intron (NM_145617, intron 77 of 77)	ORR1A2|LTR|ERVL-MaLR	7700	NM_175206	74165	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0.963	0.758	0.269	0.824	0.403	0.034	0.686	0.851	0.649	1.086	0.473	0.472	0.525	0.780	nan	1.255	0.629	1.474	nan	2.304	1.628	4.276	0.996	0.790	1.437
5815	chr16	14177307	14179421	+	0	NA	intron (NM_023317, intron 4 of 8)	intron (NM_023317, intron 4 of 8)	15089	NM_001114085	67203	Mm.24105	NM_023317	ENSMUSG00000022678	Nde1	2810027M15Rik|AU042936|AW822251|Nude|mNudE	nudE neurodevelopment protein 1	protein-coding	3.834	1.285	0.743	3.602	1.432	1.225	2.689	3.060	1.759	nan	6.068	2.439	0.757	1.697	1.442	1.490	1.329	2.573	0.722	0.411	1.013	0.773	0.431	0.538	1.719
1923	chr11	4963974	4966067	+	0	NA	intron (NM_001243043, intron 1 of 22)	PB1D9|SINE|Alu	-16956	NM_010904	380684	Mm.298283	NM_010904	ENSMUSG00000020396	Nefh	NF-H|NF200|Nfh|mKIAA0845	neurofilament, heavy polypeptide	protein-coding	4.584	3.310	0.637	8.543	3.017	1.120	4.484	5.438	3.613	7.396	4.050	2.058	4.784	6.234	5.965	7.649	3.486	5.986	2.409	nan	1.852	3.189	2.259	1.639	7.942
162	chr1	51907927	51914671	+	0	NA	intron (NM_001290982, intron 1 of 28)	intron (NM_001290982, intron 1 of 28)	4679	NM_001290982	17912	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	7.658	0.665	0.213	3.648	3.335	1.417	5.381	5.197	4.847	4.451	7.164	4.411	6.795	6.736	6.075	8.743	4.972	6.768	nan	1.089	0.576	1.823	3.261	2.032	5.550
14889	chr9	21040030	21044886	+	0	NA	Intergenic	RMER15-int|LTR|ERVL	-10130	NR_035438	100316681		NR_035438	ENSMUSG00000084663	Mir1900	Mirn1900|mmu-mir-1900	microRNA 1900	ncRNA	6.754	13.368	5.961	7.503	5.149	4.403	4.027	6.663	4.051	9.349	5.031	3.935	4.251	6.975	5.056	6.375	3.911	6.382	4.884	4.075	4.126	4.634	4.585	5.171	11.083
433	chr1	91611359	91616532	+	0	NA	Intergenic	PB1D7|SINE|Alu	72865	NM_023046	65247	Mm.234152	NM_023046	ENSMUSG00000026311	Asb1	1700029O08Rik|1700054C17Rik|AI426616|AI851378|mKIAA1146	ankyrin repeat and SOCS box-containing 1	protein-coding	4.391	0.367	0.278	2.989	1.370	0.583	3.254	1.308	3.580	4.811	0.652	0.636	7.613	4.838	4.519	9.914	4.925	5.581	0.622	0.244	0.268	nan	0.239	0.147	6.994
880	chr1	173281643	173284729	+	0	NA	Intergenic	Intergenic	-5430	NM_001205011	100504232	Mm.482546	NM_001205011	ENSMUSG00000079180	Mptx2	ENSMUSG00000079180|Gm11062	mucosal pentraxin 2	protein-coding	5.595	0.952	0.759	1.695	2.809	2.154	4.241	3.677	2.483	2.528	1.266	1.636	4.156	4.189	3.391	7.022	5.408	4.607	0.799	0.835	0.430	0.463	0.685	0.369	3.951
9073	chr2	173276852	173278637	+	0	NA	Intergenic	Intergenic	-1211	NM_022995	65112	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	5.137	4.562	2.006	2.802	4.982	1.888	4.084	5.425	5.729	6.957	3.587	1.966	6.689	6.161	5.422	7.697	6.377	5.550	1.370	1.307	0.908	0.569	1.301	0.639	6.107
6095	chr16	45757255	45758907	+	0	NA	intron (NM_001252442, intron 15 of 18)	intron (NM_001252442, intron 15 of 18)	-15126	NM_172511	213012	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	3.768	1.081	0.681	3.120	3.311	1.498	1.959	3.362	2.014	2.801	0.884	0.882	1.882	3.483	2.538	3.635	2.402	3.254	1.080	1.533	0.592	0.987	0.840	0.582	4.950
3461	chr12	77910508	77911845	+	0	NA	Intergenic	Intergenic	-315479	NM_172952	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	3.784	0.573	0.094	1.937	2.675	1.509	3.134	4.218	1.455	2.698	3.658	1.934	2.909	4.202	5.143	4.487	2.723	4.390	0.853	0.294	0.280	0.932	0.277	0.110	5.371
13958	chr7	152228553	152238305	+	0	NA	Intergenic	Intergenic	6918594	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	4.820	nan	0.533	nan	5.043	2.355	6.445	4.616	5.715	7.328	4.323	1.902	8.237	9.440	5.169	7.324	4.296	5.777	1.047	0.734	0.553	0.760	nan	0.570	7.070
5396	chr15	78198736	78204727	+	0	NA	intron (NM_013645, intron 3 of 4)	intron (NM_013645, intron 3 of 4)	2506	NM_001330686	19293	Mm.2766	NM_013645	ENSMUSG00000005716	Pvalb	PV|Parv|Pva	parvalbumin	protein-coding	7.501	nan	0.505	nan	2.706	1.121	9.127	9.674	3.309	nan	3.849	1.333	9.352	7.928	7.900	7.127	8.655	6.148	1.087	1.278	0.858	nan	0.931	0.499	8.304
13410	chr7	91707752	91710070	+	0	NA	intron (NM_011807, intron 2 of 22)	intron (NM_011807, intron 2 of 22)	-353483	NM_001243046	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	4.506	0.474	0.239	2.683	2.210	1.195	3.612	3.936	4.119	4.647	0.656	0.776	7.691	5.009	4.097	4.936	7.284	5.398	0.997	0.803	0.412	nan	0.485	0.225	3.262
1008	chr1	188267234	188274148	+	0	NA	intron (NM_021408, intron 2 of 70)	intron (NM_021408, intron 2 of 70)	7853	NM_021408	22283	Mm.331238	NM_021408	ENSMUSG00000026609	Ush2a	A930011D15Rik|A930037M10Rik|Gm676|Gm983|Mush2a|Usherin|Ushrn	Usher syndrome 2A	protein-coding	7.134	0.388	0.372	1.912	3.000	1.339	4.460	3.177	2.486	2.297	5.245	2.182	4.464	4.167	2.994	nan	4.335	4.213	0.604	0.756	0.332	0.764	0.618	0.427	4.361
4530	chr14	23404915	23408482	+	0	NA	intron (NM_001253366, intron 18 of 29)	intron (NM_001253366, intron 18 of 29)	-312127	NR_033550	791307	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	ENSMUSG00000068680	predicted gene 10248	ncRNA	2.979	0.333	0.491	1.773	2.643	1.321	3.048	5.108	3.841	3.902	3.906	2.881	4.878	6.690	4.757	5.530	3.111	nan	1.287	0.970	0.498	nan	1.107	0.571	3.601
13126	chr7	35092842	35099319	+	0	NA	Intergenic	B3|SINE|B2	-23213	NM_001287521	12606	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	5.383	3.639	1.506	8.130	3.534	2.937	3.398	3.889	3.910	6.182	2.857	2.153	3.513	4.360	4.027	4.546	3.156	6.193	2.194	1.810	1.585	2.998	1.865	1.746	4.598
9805	chr3	131234972	131237809	+	0	NA	intron (NM_008212, intron 6 of 7)	intron (NM_008212, intron 6 of 7)	35711	NM_008212	15107	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	4.536	0.965	0.580	2.343	2.366	0.952	5.789	4.623	3.389	3.378	7.342	3.480	6.226	6.851	7.185	6.368	4.623	5.839	3.699	1.801	0.867	1.846	2.038	0.850	7.862
11314	chr5	66963166	66964700	+	0	NA	intron (NM_001001980, intron 6 of 25)	MLT1J|LTR|ERVL-MaLR	-4483	NM_001256122	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding	4.455	0.642	0.038	4.204	3.415	1.706	1.782	1.451	3.924	4.480	1.044	0.663	2.296	4.731	2.269	3.091	2.083	3.742	1.013	1.562	0.538	nan	1.146	0.436	2.318
3022	chr11	116973716	116983243	+	0	NA	exon (NM_172948, exon 14 of 17)	exon (NM_172948, exon 14 of 17)	59616	NM_172948	268510	Mm.35141	NM_172948	ENSMUSG00000043857	Mgat5b	C330018B01|GnT-IX|mGnTVB	mannoside acetylglucosaminyltransferase 5, isoenzyme B	protein-coding	6.770	5.960	2.527	8.830	4.513	2.977	nan	nan	5.220	6.687	4.328	3.583	5.999	6.944	6.504	7.362	4.962	nan	4.432	nan	2.397	4.153	3.328	3.046	8.266
7221	chr18	46794624	46797293	+	0	NA	Intergenic	URR1A|DNA|hAT-Charlie	-54081	NM_029008	74574	Mm.26379	NM_029008	ENSMUSG00000024481	Lvrn	4833403I15Rik|APQ|Aqpep	laeverin	protein-coding	6.416	1.060	0.700	5.358	3.307	1.665	1.414	6.998	3.779	5.183	1.020	0.590	4.013	7.509	3.636	5.086	4.069	4.581	0.748	0.760	0.394	0.937	0.545	0.386	5.170
4297	chr13	96293292	96296249	+	0	NA	Intergenic	Intergenic	-93524	NM_026173	67463	Mm.86472	NM_026173	ENSMUSG00000021671	Poc5	1200014M14Rik|AV144706	POC5 centriolar protein	protein-coding	3.825	4.314	0.840	4.981	2.698	1.288	5.594	4.681	3.536	3.569	2.408	1.942	4.756	5.848	6.528	5.825	nan	6.725	0.730	0.652	0.344	1.486	0.346	0.345	8.177
1401	chr10	68907077	68908664	+	0	NA	Intergenic	MER2|DNA|TcMar-Tigger	184124	NM_177794	327766	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	5.348	0.499	0.406	4.257	3.789	1.775	2.803	1.010	5.979	5.937	0.875	0.532	2.833	3.569	4.240	7.127	5.197	5.975	0.453	0.290		0.665	0.440	0.180	5.389
9224	chr3	32987708	32989958	+	0	NA	intron (NM_001310460, intron 9 of 15)	intron (NM_001310460, intron 9 of 15)	-3754	NM_001163517	58869	Mm.151332	NM_021483	ENSMUSG00000027674	Pex5l	1700016J08Rik|PXR2|Pex2|TRIP8b|pex5Rp	peroxisomal biogenesis factor 5-like	protein-coding	0.342	0.569	0.380	nan	0.210	0.317	nan	0.227	nan	0.130	0.205	0.044	0.148	0.214	nan	0.316	0.348	nan	6.167	4.814	1.382	7.733	5.581	3.187	0.518
4305	chr13	97450075	97451883	+	0	NA	intron (NR_110432, intron 1 of 1)	intron (NR_110432, intron 1 of 1)	16009	NR_110432	100039691	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	ENSMUSG00000078952|Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	3.941	1.154	0.169	2.546	3.808	2.926	7.040	4.611	6.015	4.991	6.906	4.805	6.500	7.418	5.194	4.815	3.403	4.027	1.139	1.201	0.711	1.395	1.173	0.722	2.977
5163	chr15	51833507	51835285	+	0	NA	intron (NM_080635, intron 2 of 7)	intron (NM_080635, intron 2 of 7)	31065	NM_080635	68135	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	3.259	1.140	0.330	0.711	0.560	0.554	7.755	5.467	1.897	1.717	2.445	1.157	5.486	3.701	5.587	4.869	4.992	2.258	0.854	0.428	0.547	0.372	0.589	0.333	1.637
4289	chr13	94862582	94865234	+	0	NA	Intergenic	B3|SINE|B2	-11719	NM_011021	18420	Mm.42051	NM_011021	ENSMUSG00000021685	Otp	-	orthopedia homeobox	protein-coding	4.086	0.666	0.404	2.181	2.667	1.411	3.876	3.305	3.682	4.180	0.904	0.692	3.527	5.106	6.230	6.928	4.647	4.375	0.799	0.809	0.800	0.663	0.686	0.666	4.288
902	chr1	174454493	174457252	+	0	NA	Intergenic	Lx9|LINE|L1	7247	NM_207694	546747	Mm.380253	NM_207694	ENSMUSG00000066671	Olfr220	EG546747|MOR103-13P|MOR103-17|Olfr220-ps1|Olfr413-ps1	olfactory receptor 220	protein-coding	6.893	3.865	1.377	6.402	4.025	2.687	4.869	4.006	5.230	5.133	4.302	2.240	4.704	5.990	6.137	8.935	5.940	5.422	1.803	2.126	2.101	4.981	1.671	1.322	6.300
827	chr1	166345024	166348011	+	0	NA	Intergenic	L1M2|LINE|L1	-32650	NM_030245	27878	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	8.705	0.628	0.390	nan	1.913	0.546	5.292	4.669	nan	4.652	1.184	0.776	8.932	6.391	5.353	10.415	4.810	5.639	0.557	0.324	0.221	nan	nan	0.254	4.136
13280	chr7	73742535	73747482	+	0	NA	intron (NM_001162532, intron 1 of 2)	B4A|SINE|B4	4701	NM_001162532	100038347	Mm.425464	NM_001162532	ENSMUSG00000078670	Fam174b	-	family with sequence similarity 174, member B	protein-coding	3.762	1.034	0.500	nan	1.531	0.744	6.959	7.614	3.734	2.997	5.982	5.122	6.578	5.520	4.179	nan	3.593	2.845	1.108	0.946	0.447	0.792	1.196	0.963	2.256
266	chr1	66942046	66943213	+	0	NA	intron (NM_021285, intron 1 of 6)	intron (NM_021285, intron 1 of 6)	2427	NM_021285	17901	Mm.1000	NM_021285	ENSMUSG00000061816	Myl1	AI325107|MLC1f|MLC3f|Mylf	myosin, light polypeptide 1	protein-coding	4.512	1.662	1.388	1.164	0.448	0.247	3.826	1.772	2.168	2.158	1.695	0.504	4.299	3.238	2.654	4.068	nan	2.550	2.062	1.115	0.624	2.959	0.775	0.703	3.314
14026	chr8	12747671	12750006	+	0	NA	Intergenic	Intergenic	-8178	NM_015804	50770	Mm.257837	NM_015804	ENSMUSG00000031441	Atp11a	4930558F19Rik|AU040868|Atpc1h|Ih	ATPase, class VI, type 11A	protein-coding	1.761	0.583	0.115	2.724	1.626	1.128	0.619	1.872	3.138	3.963	1.396	0.341	2.121	5.894	3.045	3.445	1.516	3.685	0.921	0.398	0.210	1.417	0.389	0.419	2.681
12316	chr6	72202675	72203951	+	0	NA	Intergenic	Intergenic	32264	NM_153778	71093	Mm.87449	NM_153778	ENSMUSG00000037621	Atoh8	4933425C05Rik|Hath6|Math6|bHLHa21|okadin	atonal bHLH transcription factor 8	protein-coding	1.545	0.580	0.919	1.307	1.501	1.310	4.150	5.835	2.245	1.642	1.398	1.675	2.478	4.039	3.792	3.839	2.445	3.168	0.505	1.001	0.937	1.252	0.738	0.545	2.420
7770	chr19	41556739	41559390	+	0	NA	intron (NM_172154, intron 2 of 2)	L1M5|LINE|L1	8425	NM_172154	212391	Mm.422910	NM_172154	ENSMUSG00000025019	Lcor	3110023F06Rik|A630025C20Rik|Mlr2|mKIAA1795	ligand dependent nuclear receptor corepressor	protein-coding	6.995	11.242	4.248	8.036	4.691	3.851	7.379	9.554	4.001	12.147	6.055	3.954	5.476	8.021	6.562	7.066	nan	6.382	2.789	2.652	3.465	4.391	3.723	5.506	12.259
3128	chr11	120849902	120853264	+	0	NA	intron (NM_027745, intron 18 of 18)	intron (NM_027745, intron 18 of 18)	-27036	NM_007988	14104	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	6.957	9.516	3.165	8.461	7.465	5.111	5.873	6.985	5.390	11.046	4.601	3.132	6.353	8.251	7.637	8.434	4.659	7.079	4.996	nan	3.936	6.507	3.559	3.983	10.316
8697	chr2	132769198	132774829	+	0	NA	Intergenic	Intergenic	-9265	NM_007694	12653	Mm.255241	NM_007694	ENSMUSG00000027350	Chgb	Scg-1	chromogranin B	protein-coding	1.030	0.466	0.184	0.547	0.180	0.176	5.658	7.606	2.793	1.648	3.644	3.938	6.038	3.646	3.749	nan	1.673	2.456	nan	1.248	1.426	3.557	0.804	0.709	0.521
6979	chr18	3895961	3897467	+	0	NA	Intergenic	MIRb|SINE|MIR	-269118	NM_026092	67328	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	1.917	0.784	0.356	1.329	1.783	0.322	1.946	4.487	2.533	2.466	4.689	0.916	3.212	3.795	2.737	2.721	1.438	4.110	1.578	0.674	0.469	1.486	2.198	1.242	1.728
1624	chr10	94037155	94040031	+	0	NA	intron (NM_053072, intron 1 of 20)	intron (NM_053072, intron 1 of 20)	2592	NM_053072	13998	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	6.367	2.077	0.490	6.733	2.755	0.911	3.545	6.621	5.690	5.326	nan	1.339	4.542	7.005	5.761	9.119	4.743	6.021	nan	0.524	0.628	nan	0.981	0.632	8.016
7297	chr18	61709359	61712209	+	0	NA	Intergenic	MLTR11B|LTR|ERVK	-3149	NM_172832	240334	Mm.234457	NM_172832	ENSMUSG00000024579	Pcyox1l	BC060677|C630049M13	prenylcysteine oxidase 1 like	protein-coding	2.363	nan	0.868	2.058	2.304	2.210	4.087	nan	2.248	2.743	3.177	3.329	nan	5.220	3.723	2.627	1.808	4.165	nan	0.618	0.695	nan	0.708	0.887	nan
4440	chr13	117807117	117808410	+	0	NA	intron (NM_010408, intron 2 of 7)	Lx7|LINE|L1	-87752	NR_045508	71100	Mm.414841	NR_045508	ENSMUSG00000079048	4933413L06Rik	-	RIKEN cDNA 4933413L06 gene	ncRNA	2.763	1.680	1.290	2.144	1.919	0.831	1.904	1.162	0.900	1.493	1.539	0.666	3.509	3.092	2.377	3.610	1.930	2.775	0.393	0.541	0.384	0.608	0.441	0.939	2.091
2892	chr11	106116842	106118294	+	0	NA	exon (NM_011947, exon 5 of 16)	exon (NM_011947, exon 5 of 16)	32666	NM_011947	26406	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	10.721	10.446	2.962	8.384	3.905	2.005	7.620	7.260	6.495	8.009	7.452	3.687	6.255	10.054	8.161	9.004	6.824	8.544	5.295	5.088	1.961	6.648	3.832	2.629	9.119
15578	chr9	118882506	118885407	+	0	NA	intron (NM_001113514, intron 12 of 13)	B3|SINE|B2	-42580	NM_133710	69274	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	5.035	0.596	0.225	4.099	3.727	1.485	5.049	4.500	2.855	3.192	5.335	2.410	3.088	5.768	3.216	4.900	2.657	5.068	1.501	0.889	0.811	1.287	nan	1.026	6.104
7911	chr19	60654732	60658324	+	0	NA	Intergenic	Intergenic	-75505	NM_001172096	78832	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	8.708	7.176	2.506	7.262	4.265	2.407	8.417	nan	5.192	7.749	5.292	2.966	5.701	8.220	8.655	8.956	6.288	7.794	2.189	1.826	2.293	3.938	2.463	3.238	12.141
1695	chr10	104959680	104961663	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	613808	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	6.763	0.403	0.123	4.346	1.315	0.627	5.981	7.151	5.627	4.305	6.174	3.902	7.136	5.425	5.441	7.609	6.146	6.678	3.935	1.852	1.105	2.437	2.530	2.654	5.104
6950	chr17	87717569	87719127	+	0	NA	intron (NM_008628, intron 12 of 15)	intron (NM_008628, intron 12 of 15)	45791	NM_008628	17685	Mm.4619	NM_008628	ENSMUSG00000024151	Msh2	AI788990	mutS homolog 2	protein-coding	1.088	0.973	1.558	0.860	1.528	0.991	1.392	1.610	nan	1.713	1.301	0.817	0.392	0.930	0.894	1.712	1.733	1.528	2.131	2.462	4.222	3.133	2.394	2.746	1.252
12435	chr6	89812357	89814213	+	0	NA	Intergenic	Lx2|LINE|L1	32330	NM_053221	113848	Mm.349358	NM_053221	ENSMUSG00000068232	Vmn1r42	V1ra1|V1ra3|V1ra6	vomeronasal 1 receptor 42	protein-coding	5.959	0.453	0.319	1.269	2.382	0.777	1.316	1.063	0.988	1.266	0.868	0.454	2.800	4.434	2.335	1.646	1.701	2.385	nan	0.215	0.132	0.197	0.140	0.104	3.231
2378	chr11	69614022	69619145	+	0	NA	intron (NM_011367, intron 4 of 7)	intron (NM_011367, intron 4 of 7)	1322	NM_011367	20415	Mm.1431	NM_011367	ENSMUSG00000005202	Shbg	ABP	sex hormone binding globulin	protein-coding	5.568	4.871	1.527	5.665	2.436	1.395	4.455	7.964	2.653	5.475	3.100	2.615	4.428	7.426	5.716	7.136	4.831	5.125	2.416	1.587	1.340	2.925	nan	1.734	8.999
2983	chr11	115549876	115561870	+	0	NA	Intergenic	B3A|SINE|B2	-8571	NM_001002929	445007	Mm.4379	NM_001002929	ENSMUSG00000020739	Nup85	Pcnt1|frount	nucleoporin 85	protein-coding	5.461	6.254	3.467	4.506	4.829	3.558	nan	4.374	3.874	nan	2.016	1.511	3.562	5.091	3.778	4.183	3.637	4.211	1.616	nan	1.443	1.499	1.228	1.101	3.235
6665	chr17	46133236	46136343	+	0	NA	intron (NM_029338, intron 4 of 4)	intron (NM_029338, intron 4 of 4)	9409	NM_029338	75564	Mm.17993	NM_029338	ENSMUSG00000023966	Rsph9	1700027N10Rik	radial spoke head 9 homolog (Chlamydomonas)	protein-coding	4.385	0.640	0.299	2.167	3.243	1.981	6.373	5.530	3.376	4.710	0.763	0.600	3.546	6.009	3.647	4.894	3.649	3.675	2.458	1.866	1.829	1.211	3.895	3.451	4.901
6086	chr16	45222544	45228008	+	0	NA	intron (NM_177584, intron 1 of 5)	intron (NM_177584, intron 1 of 5)	939	NM_177584	208154	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	1.086	9.344	4.579	1.000	0.232	0.123	0.337	nan	0.654	0.630	0.566	0.281	0.273	0.234	0.597	0.751	0.926	0.898	0.707	0.488	0.381	0.479	0.319	0.225	0.685
668	chr1	136887871	136892813	+	0	NA	intron (NM_030676, intron 7 of 8)	intron (NM_030676, intron 7 of 8)	63288	NM_001159769	26424	Mm.16794	NM_030676	ENSMUSG00000026398	Nr5a2	AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B	nuclear receptor subfamily 5, group A, member 2	protein-coding	2.300	0.920	0.279	nan	1.942	0.844	1.420	1.114	1.973	2.501	0.515	0.345	4.075	4.350	2.131	nan	3.428	1.845	0.474	0.453	0.353	0.547	0.237	0.287	nan
9953	chr4	15971217	15973166	+	0	NA	intron (NM_013752, intron 8 of 15)	intron (NM_013752, intron 8 of 15)	14224	NM_013752	27354	Mm.20866	NM_013752	ENSMUSG00000028224	Nbn	Nbs1	nibrin	protein-coding	1.944	0.751	0.306	2.607	2.511	2.094	2.786	4.943	2.175	1.933	0.678	0.749	3.421	4.398	2.848	2.212	2.393	2.131	0.900	0.575	0.546	0.409	0.501	0.498	1.472
9947	chr4	11942823	11945966	+	0	NA	Intergenic	L1Md_T|LINE|L1	21319	NM_001098231	381511	Mm.331489	NM_001033453	ENSMUSG00000049225	Pdp1	Gm1024|Ppm2c	pyruvate dehyrogenase phosphatase catalytic subunit 1	protein-coding	3.280	0.555	0.487	3.162	1.872	0.874	2.812	3.505	3.319	4.092	1.572	1.649	4.225	4.204	3.747	4.931	2.701	5.473	1.083	nan	0.343	0.844	1.108	0.665	3.694
5711	chr15	101852082	101865778	+	0	NA	TTS (NM_001003667)	TTS (NM_001003667)	-8144	NM_008473	16678	Mm.183137	NM_008473	ENSMUSG00000046834	Krt1	Krt-2.1|Krt2-1|Krt86	keratin 1	protein-coding	4.956	0.906	0.527	2.510	2.111	1.434	9.714	12.330	3.073	3.493	3.223	3.114	6.738	6.966	6.080	5.383	5.480	4.231	2.646	1.654	1.621	2.506	2.769	2.481	6.247
910	chr1	179187411	179189784	+	0	NA	intron (NM_027188, intron 5 of 11)	intron (NM_027188, intron 5 of 11)	329406	NM_027188	69726	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	3.208	8.310	3.116	7.100	3.002	1.736	6.910	2.342	1.842	8.053	4.390	1.248	3.719	4.949	4.746	3.084	1.227	3.071	6.614	3.069	6.623	8.531	4.962	10.388	4.551
3463	chr12	77964000	77965525	+	0	NA	Intergenic	MTE2a|LTR|ERVL-MaLR	-261893	NM_172952	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	3.768	0.735	0.946	1.278	5.517	2.854	4.868	5.986	2.688	3.071	8.624	5.807	3.333	4.460	2.331	1.400	1.282	2.822	1.903	0.979	1.340	0.853	0.968	1.519	2.519
7863	chr19	53112187	53115362	+	0	NA	Intergenic	Intergenic	-26669	NM_001164099	27360	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	4.855	nan	1.349	7.497	2.922	0.932	4.161	nan	3.932	6.803	5.163	3.468	4.856	5.082	nan	7.902	5.073	6.886	1.201	0.903	0.888	2.642	1.333	1.133	8.958
693	chr1	137809449	137815727	+	0	NA	Intergenic	Intergenic	-153867	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.308	0.520	0.332	nan	0.114	0.040	0.235	0.288	0.730	0.493	8.275	2.264	0.182	nan	0.212	nan	0.230	0.393	0.522	0.410	0.305	0.721	0.383	0.240	nan
2701	chr11	96499142	96502694	+	0	NA	intron (NM_001033186, intron 2 of 12)	B3A|SINE|B2	36327	NM_001177898	78473	Mm.395840	NM_001033186	ENSMUSG00000057058	Skap1	1700091G21Rik|Scap1|Skap-55	src family associated phosphoprotein 1	protein-coding	0.300	nan	0.601	0.294	0.359	0.209	0.417	0.220	0.237	0.261	0.258	0.367	0.066	0.223	0.170	0.425	nan	0.374	3.966	nan	2.831	2.077	7.014	5.831	0.287
4601	chr14	35311841	35317897	+	0	NA	intron (NM_008166, intron 6 of 15)	LTR85a|LTR|Gypsy?	420260	NR_029774	723847		NR_029774	ENSMUSG00000065481	Mir346	Mirn346|mir-346|mmu-mir-346	microRNA 346	ncRNA	6.183	4.671	1.510	6.058	3.713	2.536	5.852	nan	4.779	8.404	7.498	4.681	6.302	8.110	7.322	7.565	4.638	7.176	3.833	1.803	2.151	4.367	1.790	2.797	10.497
15504	chr9	108563852	108565335	+	0	NA	intron (NM_011830, intron 9 of 13)	intron (NM_011830, intron 9 of 13)	2749	NM_023247	66706	Mm.29471	NM_023247	ENSMUSG00000070283	Ndufaf3	4733401H18Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3	protein-coding	4.321	6.083	3.108	4.788	3.034	1.857	3.509	5.664	3.464	4.322	2.235	1.432	3.123	4.148	4.927	5.333	3.260	4.634	3.373	1.869	1.873	3.610	2.544	2.536	5.712
8690	chr2	132107372	132111489	+	0	NA	intron (NM_018824, intron 1 of 15)	MTC|LTR|ERVL-MaLR	35678	NM_018824	54338	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	5.167	2.860	1.113	5.772	4.201	2.362	2.270	2.066	3.567	3.799	1.659	1.368	2.095	4.044	3.372	3.615	2.325	4.022	nan	1.737	1.732	0.939	0.880	0.554	4.626
14043	chr8	13503713	13509006	+	0	NA	Intergenic	Intergenic	-11824	NM_019521	14456	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	5.249	0.892	0.535	2.187	1.025	0.536	4.824	7.455	2.952	3.246	0.769	0.902	9.235	4.710	8.008	7.957	5.411	6.204	1.459	1.027	0.614	3.635	0.992	0.561	6.456
10261	chr4	89028861	89031661	+	0	NA	Intergenic	Intergenic	-20046	NR_033533	100040617	Mm.171720	NR_033533	ENSMUSG00000085183	Gm12603	OTTMUSG00000007693	predicted gene 12603	ncRNA	2.053	1.386	0.933	1.330	2.361	1.501	2.121	nan	nan	2.282	3.135	2.705	1.981	2.747	2.162	1.592	1.263	2.960	3.300	nan	2.332	3.199	2.409	1.681	nan
8305	chr2	65196988	65202534	+	0	NA	intron (NM_027225, intron 1 of 12)	intron (NM_027225, intron 1 of 12)	38865	NM_177025	319876	Mm.34159	NM_027225	ENSMUSG00000034903	Cobll1	1810047P18Rik|Coblr1|D430044D16Rik	Cobl-like 1	protein-coding	0.380	0.444	0.279	0.287	0.121	0.066	0.295	0.412	0.425	0.245	0.345	0.251	0.218	0.211	0.238	0.658	0.637	0.436	7.766	2.805	2.110	7.529	2.952	1.999	0.523
14219	chr8	47926601	47933273	+	0	NA	intron (NM_133791, intron 1 of 22)	intron (NM_133791, intron 1 of 22)	60614	NM_133791	52357	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	10.766	12.586	5.546	8.695	6.402	3.077	5.519	8.271	7.507	8.508	4.929	3.025	10.494	10.553	8.745	10.998	6.582	9.110	2.384	2.523	1.305	2.669	2.131	1.386	10.388
2309	chr11	62094133	62095789	+	0	NA	intron (NM_001029936, intron 1 of 12)	intron (NM_001029936, intron 1 of 12)	17937	NM_001029936	432572	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	5.759	10.788	2.977	8.772	3.607	2.384	4.236	6.322	4.943	11.224	3.674	4.003	5.981	8.110	7.263	8.875	6.591	6.433	5.158	1.516	3.100	5.699	2.326	5.330	9.928
7341	chr18	65852776	65855786	+	0	NA	Intergenic	Intergenic	-19205	NM_175012	225642	Mm.20298	NM_175012	ENSMUSG00000024517	Grp	BLP	gastrin releasing peptide	protein-coding	6.864	2.734	1.525	4.384	3.327	2.537	3.492	4.118	2.400	2.916	2.287	1.799	3.117	3.802	2.695	2.984	2.517	4.398	3.240	1.494	1.313	3.060	2.415	1.579	5.175
8235	chr2	49401313	49402240	+	0	NA	Intergenic	Intergenic	-49710	NM_172663	227867	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2 (Drosophila)	protein-coding	4.147	0.386	0.662	1.611	0.673	0.380	3.645	4.036	4.915	2.728	1.002	1.698	8.416	4.010	3.551	6.707	6.139	6.552	0.813	0.191	0.396	0.830	0.376	0.321	2.918
4348	chr13	102522138	102524574	+	0	NA	Intergenic	Intergenic	-170202	NM_008533	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly78|RP105	CD180 antigen	protein-coding	2.332	1.869	0.671	3.347	1.690	0.883	1.311	2.590	2.459	2.415	1.063	1.144	2.003	2.888	3.131	4.000	nan	3.650	1.561	0.776	0.127	1.304	0.865	0.443	3.062
12640	chr6	118014928	118024680	+	0	NA	intron (NM_001316749, intron 1 of 12)	intron (NM_001316749, intron 1 of 12)	8267	NM_001316749	70727	Mm.87660	NM_027526	ENSMUSG00000030134	Rasgef1a	6330404M18Rik|AI835194	RasGEF domain family, member 1A	protein-coding	3.037	3.180	1.242	4.633	2.873	1.546	4.018	2.730	1.942	3.274	0.556	0.427	3.506	nan	3.914	5.733	3.397	4.301	5.870	4.136	2.895	5.833	nan	3.705	5.638
6823	chr17	71346286	71353558	+	0	NA	intron (NM_028887, intron 45 of 47)	intron (NM_028887, intron 45 of 47)	-8118	NR_028023	100043644	Mm.362377	NR_028023		Gm4566	-	ubiquitin specific peptidase 16 pseudogene	pseudo	7.946	5.789	2.253	8.530	6.387	4.747	7.692	6.756	6.223	7.800	5.056	3.201	7.122	9.592	8.980	9.818	7.526	10.197	2.788	2.160	1.622	2.948	1.927	2.137	10.061
4414	chr13	112307090	112315525	+	0	NA	intron (NM_001168405, intron 1 of 5)	RLTR13D2|LTR|ERVK	22789	NM_001168404	77318	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	7.332	nan	0.570	2.639	2.934	2.636	7.959	7.166	5.481	5.724	0.487	0.775	6.503	9.721	6.658	6.745	7.007	5.458	0.825	0.814	1.089	nan	0.836	0.925	8.237
5065	chr15	13295141	13298315	+	0	NA	Intergenic	Intergenic	-123053	NM_007666	12563	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	nan	nan	0.431	0.295	0.118	0.040	0.756	2.625	0.497	0.441	2.322	4.562	0.623	0.874	0.811	0.773	0.652	0.897	0.498	0.324	0.077	0.345	0.281	0.272	0.353
4859	chr14	76269505	76271403	+	0	NA	Intergenic	MIRb|SINE|MIR	-144507	NM_001310646	21807	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	2.023	0.836	0.610	1.089	1.592	1.286	4.049	3.108	1.607	2.160	2.258	1.311	2.751	3.775	3.127	2.480	2.868	1.111	0.923	0.655	1.229	0.700	1.317	0.923	2.676
6885	chr17	80604926	80607347	+	0	NA	intron (NM_001290345, intron 24 of 33)	intron (NM_001290345, intron 24 of 33)	-42302	NM_001033443	381113	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	7.812	14.289	4.995	9.397	4.070	3.140	9.603	7.221	5.059	9.917	7.548	4.593	6.107	9.134	11.045	11.868	7.133	8.352	7.705	3.766	4.016	8.212	4.917	5.780	14.141
2558	chr11	85010168	85014942	+	0	NA	intron (NM_001029934, intron 26 of 33)	B3A|SINE|B2	54801	NM_007607	12351	Mm.1641	NM_007607	ENSMUSG00000000805	Car4	AW456718|Ca4	carbonic anhydrase 4	protein-coding	nan	7.934	7.438	nan	0.421	0.468	0.579	0.692	0.796	0.610	0.458	0.526	0.337	0.517	0.513	0.588	0.955	0.554	2.267	1.937	1.359	nan	2.331	2.002	nan
11998	chr5	151423762	151426829	+	0	NA	intron (NR_131166, intron 2 of 3)	intron (NR_131166, intron 2 of 3)	18791	NR_131166	100042166	Mm.443286	NR_131166	ENSMUSG00000097321	Gm3704	-	predicted gene 3704	ncRNA	2.840	2.577	1.766	2.297	3.093	1.696	1.612	4.158	3.674	4.027	6.455	2.761	1.998	5.067	2.706	2.419	1.771	3.056	2.201	1.619	0.483	1.349	1.211	0.897	nan
10253	chr4	88645687	88649856	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-3312	NM_177347	230396	Mm.246592	NM_177347	ENSMUSG00000063376	Ifna13	-	interferon alpha 13	protein-coding	0.553	nan	0.526	0.451	0.421	0.119	0.466	nan	nan	0.591	6.288	4.027	0.453	0.961	0.328	0.565	0.461	nan	0.684	nan	0.282	0.484	0.249	0.319	nan
15374	chr9	89768706	89770705	+	0	NA	Intergenic	Intergenic	-31230	NM_207260	330998	Mm.294417	NM_207260	ENSMUSG00000047606	Ankrd34c	B230218L05Rik|BB276295|Gm771	ankyrin repeat domain 34C	protein-coding	3.638	1.413	0.915	1.936	2.057	0.879	2.363	3.540	3.011	3.648	1.436	2.707	3.701	4.891	4.035	2.846	1.097	4.393	1.497	0.377	0.429	1.004	1.495	0.549	3.093
10499	chr4	123389464	123391144	+	0	NA	intron (NM_001199136, intron 66 of 97)	Lx5b|LINE|L1	21607	NM_001167918	442834	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	1.408	1.061	0.696	0.714	2.102	1.614	1.662	0.971	1.183	1.733	0.252	0.626	0.620	2.956	nan	1.464	1.296	0.797	0.527	0.752	0.974	0.519	0.738	0.292	0.747
5923	chr16	24034720	24036740	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	-47118	NM_009744	12053	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	4.961	1.070	1.043	2.365	2.391	2.130	6.800	7.629	4.579	3.601	1.192	1.440	9.075	6.570	5.324	7.974	7.388	4.695	0.811	0.763	0.485	0.670	nan	0.937	4.645
4851	chr14	75453201	75455559	+	0	NA	Intergenic	Intergenic	-1602	NM_001128093	380918	Mm.484360	NM_001128093	ENSMUSG00000091722	Siah3	Gm912	seven in absentia homolog 3 (Drosophila)	protein-coding	5.981	2.858	1.088	2.644	2.473	1.104	4.617	11.188	2.186	3.658	1.957	1.254	4.321	5.724	6.897	7.213	3.054	5.494	0.622	0.581	0.395	0.516	0.617	0.763	6.649
9505	chr3	93381014	93385626	+	0	NA	Intergenic	Intergenic	-10379	NM_009100	20129	Mm.1417	NM_009100	ENSMUSG00000041984	Rptn	-	repetin	protein-coding	3.292	0.965	0.474	2.191	3.989	2.626	2.949	4.601	3.417	3.292	nan	1.698	4.424	7.644	4.180	nan	4.935	3.774	0.484	0.755	0.518	0.312	0.420	0.508	3.263
12580	chr6	112994722	112998139	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	-49164	NM_080448	259302	Mm.236401	NM_080448	ENSMUSG00000030257	Srgap3	AI452337|Arhgap14|D130026O08Rik|Gbi|MEGAP|WRP|mKIAA0411	SLIT-ROBO Rho GTPase activating protein 3	protein-coding	8.497	12.364	5.722	6.465	3.969	2.833	9.309	10.540	5.351	5.576	5.953	4.708	8.279	9.942	9.767	10.290	7.745	7.721	nan	2.710	1.886	4.219	2.882	1.957	nan
1085	chr10	7674287	7676599	+	0	NA	intron (NM_145706, intron 6 of 7)	intron (NM_145706, intron 6 of 7)	5715	NR_033219	407824	Mm.393120	NR_033219		BC020402	-	cDNA sequence BC020402	ncRNA	11.243	19.079	6.274	10.591	8.416	8.623	8.915	8.399	4.893	19.493	8.412	5.128	7.018	9.555	9.834	10.109	7.316	8.771	6.444	3.652	7.712	7.068	5.068	9.573	18.032
13456	chr7	104726986	104730007	+	0	NA	Intergenic	Lx7|LINE|L1	24927	NM_001011757	257914	Mm.377299	NM_001011757	ENSMUSG00000109806	Olfr663	MOR40-12	olfactory receptor 663	protein-coding	8.677	12.057	3.601	9.867	5.788	2.019	8.959	10.564	4.617	9.796	6.357	3.350	8.086	11.028	9.730	9.788	6.366	8.482	nan	3.266	3.276	6.129	3.893	3.558	14.598
11617	chr5	117031853	117035807	+	0	NA	Intergenic	B4|SINE|B4	82163	NM_001122666	71954	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding	0.279	0.263	0.133	0.084	0.024	0.155	0.248	0.269	0.166	0.105	0.086	0.076	0.088	0.160	0.225	0.347	0.241	0.235	4.483	nan	2.079	5.055	nan	2.899	0.275
10276	chr4	94748004	94752578	+	0	NA	intron (NM_001290549, intron 1 of 22)	intron (NM_001290549, intron 1 of 22)	11002	NM_001290551	21687	Mm.14313	NM_013690	ENSMUSG00000006386	Tek	AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2	endothelial-specific receptor tyrosine kinase	protein-coding	3.032	nan	0.587	5.506	3.291	2.162	3.725	6.178	nan	3.899	6.037	4.343	3.941	6.019	5.115	6.428	2.922	4.053	1.209	1.109	0.639	nan	0.728	0.471	5.163
1714	chr10	110856420	110860395	+	0	NA	intron (NR_045979, intron 2 of 2)	intron (NR_045979, intron 2 of 2)	38100	NR_045979	75630	Mm.392786	NR_045979	ENSMUSG00000101801	1700020G17Rik	4930480D05Rik	RIKEN cDNA 1700020G17 gene	ncRNA	3.267	3.918	3.081	2.074	2.007	1.176	2.721	2.506	nan	2.373	0.779	0.910	2.290	3.662	2.987	3.772	2.387	3.085	1.232	1.010	0.734	0.951	1.018	0.768	2.147
8168	chr2	34625114	34630389	+	0	NA	Intergenic	Intergenic	127481	NM_025709	66691	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	6.448	7.640	3.489	5.787	5.775	4.439	5.437	6.721	3.672	5.008	3.555	2.568	5.588	6.498	5.902	8.723	5.391	6.219	3.360	2.752	2.258	3.265	2.937	2.870	7.410
1403	chr10	69054172	69055103	+	0	NA	Intergenic	L1Md_T|LINE|L1	-153915	NM_001252636	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	2.467	0.666	0.412	1.901	1.696	0.558	1.873	0.781	2.368	3.480	0.159	0.446	2.614	3.714	1.982	4.021	2.244	3.887	1.147	0.613	0.210	0.614	0.323	0.476	4.512
12833	chr6	143989918	143994651	+	0	NA	intron (NM_001113559, intron 6 of 13)	intron (NM_001113559, intron 6 of 13)	-45178	NM_001347506	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding	nan	0.593	0.413	nan	0.706	0.389	1.849	2.155	1.747	nan	2.729	2.450	nan	1.555	1.699	nan	0.969	1.936	3.028	nan	0.829	4.028	1.606	1.220	nan
13072	chr7	29754364	29757883	+	0	NA	Intergenic	Intergenic	-12429	NM_023750	74352	Mm.251083	NM_023750	ENSMUSG00000046185	Zfp84	2210410P13Rik|4633401C23Rik|AI415447|BB081605|C86188|KRAB18|Zfp69	zinc finger protein 84	protein-coding	2.447	1.471	0.535	3.513	2.632	1.949	3.264	7.801	2.990	2.899	4.447	2.189	6.661	6.993	6.531	4.838	2.299	6.963	0.625	0.463	0.299	0.830	0.478	0.271	6.367
11376	chr5	77717681	77720669	+	0	NA	Intergenic	Intergenic	253687	NR_131050	69370	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	0.576	9.128	7.248	1.176	0.606	0.469	0.751	0.588	0.978	0.831	0.632	0.203	0.233	0.590	0.533	nan	0.739	nan	0.732	0.779	1.103	0.348	0.358	0.667	0.797
9146	chr3	10276799	10284311	+	0	NA	intron (NM_029310, intron 1 of 5)	intron (NM_029310, intron 1 of 5)	20628	NM_029310	75497	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	3.638	0.834	0.347	2.835	2.011	1.106	2.610	1.857	2.683	3.058	4.511	1.320	1.412	3.120	4.160	6.468	5.833	3.203	0.851	0.521	0.376	0.534	0.452	0.445	4.883
15185	chr9	63815007	63820134	+	0	NA	Intergenic	B3|SINE|B2	-59576	NM_016769	17127	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	3.915	1.687	0.637	4.826	1.861	1.075	2.488	2.886	2.923	3.685	2.282	1.386	2.298	3.941	3.860	4.815	1.864	4.835	nan	1.011	0.720	1.311	0.514	0.341	5.954
1497	chr10	80048929	80053035	+	0	NA	intron (NR_110342, intron 2 of 6)	intron (NR_110342, intron 2 of 6)	-2506	NM_008162	625249	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	5.109	7.061	2.563	6.262	3.722	2.521	3.447	4.101	2.927	5.427	2.785	1.537	2.364	4.298	4.288	5.237	3.135	5.059	nan	1.743	1.973	1.845	1.348	1.500	6.991
13399	chr7	90014101	90017139	+	0	NA	Intergenic	Intergenic	-13539	NR_110365	319711	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15	RIKEN cDNA E230029C05 gene	ncRNA	3.784	10.840	2.447	6.259	0.926	0.824	3.821	4.781	nan	6.475	3.829	1.909	4.450	4.401	6.028	7.066	nan	6.602	6.398	2.036	4.336	7.431	3.329	5.736	13.333
497	chr1	108302144	108306723	+	0	NA	Intergenic	Intergenic	387174	NR_102307	319596	Mm.136054	NR_102306	ENSMUSG00000100457	D830032E09Rik	-	RIKEN cDNA D830032E09 gene	ncRNA	6.959	nan	0.342	2.521	3.543	1.539	11.958	6.228	4.021	4.591	4.788	3.815	8.982	6.912	6.529	9.566	5.583	5.384	1.115	0.773	0.212	0.750	0.709	0.537	8.758
4236	chr13	69624506	69630393	+	0	NA	intron (NM_145354, intron 11 of 18)	intron (NM_145354, intron 11 of 18)	15433	NM_145354	28114	Mm.260009	NM_145354	ENSMUSG00000021595	Nsun2	D13Wsu123e|Misu	NOL1/NOP2/Sun domain family member 2	protein-coding	3.725	0.835	0.199	1.332	1.129	0.832	4.132	5.980	2.202	2.966	4.291	1.687	5.502	6.079	3.709	5.638	2.112	3.260	2.879	0.985	1.020	2.965	1.917	1.376	4.078
12449	chr6	90875061	90876960	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-65887	NM_001134384	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	1.237	0.626	0.474	nan	0.556	0.246	2.238	2.469	0.989	1.529	0.410	0.405	2.664	6.275	2.964	3.318	2.360	2.735	nan	0.854	0.557	1.659	2.544	1.697	2.359
14986	chr9	41995278	41999428	+	0	NA	intron (NM_011436, intron 31 of 47)	IMPB_01|Satellite|Satellite	126936	NM_011436	20660	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	4.215	1.341	1.097	3.627	3.564	2.530	5.838	4.892	3.586	4.489	5.324	4.416	5.436	6.315	4.130	4.881	2.641	5.795	nan	1.865	1.582	3.002	1.586	0.980	4.919
10465	chr4	120373084	120374779	+	0	NA	Intergenic	Intergenic	-31350	NM_001159630	29871	Mm.427014	NM_013883	ENSMUSG00000000085	Scmh1	AI315320|AI851618|Scml1|Scml3	sex comb on midleg homolog 1	protein-coding	0.597	0.516	0.432	0.478	0.275	0.074	0.215	0.348	0.270	0.450	0.364	0.221	0.198	0.330	0.343	nan	0.432	0.320	6.775	16.067	7.296	12.146	7.568	5.216	0.422
4615	chr14	41944039	41948369	+	0	NA	Intergenic	Intergenic	149073	NR_073362	73553	Mm.243777	NM_028570	ENSMUSG00000090462	1700091H14Rik	100041930|Gm3578	RIKEN cDNA 1700091H14 gene	ncRNA	6.478	0.586	0.386	7.038	3.316	1.365	8.027	6.906	7.919	10.690	0.681	0.505	9.244	12.726	12.507	13.201	5.982	11.977	0.485	0.996	0.623	0.730	0.780	0.567	12.599
169	chr1	52288041	52290090	+	0	NA	Intergenic	Intergenic	-55833	NM_001113383	14660	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	8.544	16.544	4.383	9.941	6.835	5.164	6.264	5.153	5.990	14.205	4.675	4.599	7.447	7.567	8.981	13.175	7.652	10.812	7.804	3.162	6.229	7.591	4.796	7.706	13.548
6789	chr17	66131656	66133872	+	0	NA	intron (NM_001003919, intron 5 of 26)	intron (NM_001003919, intron 5 of 26)	9244	NM_001003919	320209	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	7.572	14.643	4.625	14.174	5.773	5.085	9.709	7.891	6.669	23.711	8.825	3.829	6.522	9.585	10.881	13.422	6.693	11.242	6.556	2.049	3.499	7.109	3.272	6.096	20.552
2579	chr11	86536626	86539193	+	0	NA	intron (NM_028259, intron 1 of 9)	B1_Mur2|SINE|Alu	6898	NM_028259	72508	Mm.394280	NM_028259	ENSMUSG00000020516	Rps6kb1	2610318I15Rik|4732464A07Rik|70kDa|AA959758|AI256796|AI314060|S6K1|p70/85s6k|p70s6k	ribosomal protein S6 kinase, polypeptide 1	protein-coding	3.666	0.851	0.624	3.191	3.268	2.100	4.438	3.095	3.401	4.132	1.342	1.153	4.880	4.553	3.604	3.934	3.432	4.212	1.058	0.752	0.715	nan	0.617	0.562	1.890
398	chr1	88924892	88928323	+	0	NA	Intergenic	Intergenic	-89506	NR_040471	73475	Mm.491040	NR_040471	ENSMUSG00000099378	1700067G17Rik	-	RIKEN cDNA 1700067G17 gene	ncRNA	4.070	0.985	0.226	3.038	1.561	0.678	1.440	1.768	3.237	3.740	2.478	0.831	3.295	3.829	2.973	5.438	3.442	3.928	0.696	0.407	0.315	nan	0.815	0.374	5.695
7325	chr18	64998286	64999872	+	0	NA	intron (NM_001114386, intron 2 of 30)	intron (NM_001114386, intron 2 of 30)	-24448	NM_031881	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	2.587	0.806	0.573	1.475	2.174	1.143	1.560	2.359	1.859	2.047	1.477	1.518	3.956	3.535	2.398	2.548	2.175	2.568	0.413	0.438	0.566	0.696	0.588	0.904	1.702
3182	chr12	12267865	12270921	+	0	NA	intron (NM_001146119, intron 1 of 11)	intron (NM_001146119, intron 1 of 11)	7254	NM_001146119	76820	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	3.549	7.467	2.568	3.891	1.437	0.929	3.801	1.336	1.895	2.725	1.720	0.854	1.025	2.102	2.248	2.572	1.441	2.341	3.425	2.555	2.011	3.698	3.229	3.464	3.507
3934	chr13	32893340	32895163	+	0	NA	intron (NM_173051, intron 2 of 6)	MERVL-int|LTR|ERVL	3889	NM_173051	380839	Mm.250802	NM_173051	ENSMUSG00000079049	Serpinb1c	EIC|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1c	protein-coding	4.264	9.052	1.770	7.520	2.143	0.536	3.455	3.940	3.399	8.311	3.240	2.534	4.089	4.940	6.845	7.068	2.311	6.762	6.927	1.951	2.525	8.790	2.889	5.146	10.756
955	chr1	182850462	182858843	+	0	NA	intron (NM_144796, intron 3 of 7)	intron (NM_144796, intron 3 of 7)	89746	NM_144796	96935	Mm.331052	NM_144796	ENSMUSG00000038576	Susd4	AI848994|E430021N18Rik|N28096	sushi domain containing 4	protein-coding	1.121	12.975	8.001	0.977	0.493	0.398	1.381	0.882	1.126	0.987	1.243	0.950	0.766	nan	0.986	1.231	0.793	1.117	1.355	1.052	1.243	0.918	1.838	1.315	0.972
14418	chr8	87619544	87621486	+	0	NA	Intergenic	Intergenic	21695	NR_131165	73557		NR_131165		1700096P03Rik	-	RIKEN cDNA 1700096P03 gene	ncRNA	1.952	0.855	0.263	0.609	0.293	0.005	1.516	2.528	nan	0.566	3.305	1.057	1.491	0.891	1.909	2.842	2.655	1.194	nan	2.835	0.958	3.638	0.742	0.174	4.898
7358	chr18	68507584	68511585	+	0	NA	Intergenic	MTE2a|LTR|ERVL-MaLR	-80264	NM_001271716	17200	Mm.426053	NM_008560	ENSMUSG00000045569	Mc2r	ACTH-R|ACTHR|MC2-R	melanocortin 2 receptor	protein-coding	4.769	0.695	0.420	1.317	1.633	0.798	2.434	1.114	2.519	3.268	0.771	0.474	4.479	4.268	2.057	2.541	5.905	2.185	0.739	0.495	0.229	0.435	0.389	0.213	5.306
1888	chr11	3304343	3309207	+	0	NA	intron (NR_045108, intron 5 of 5)	intron (NR_045108, intron 5 of 5)	-2225	NR_045708	100302648	Mm.458664	NR_045708	ENSMUSG00000084941	Gm11944	OTTMUSG00000005017	predicted gene 11944	ncRNA	7.925	3.786	1.524	4.618	2.178	1.894	5.458	6.053	3.357	3.074	4.831	4.182	5.088	5.054	5.121	5.557	4.704	4.657	6.414	nan	2.117	3.762	5.136	4.741	7.034
14956	chr9	34852258	34854055	+	0	NA	intron (NM_001190912, intron 1 of 15)	intron (NM_001190912, intron 1 of 15)	-263572	NR_029475	78934	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	2.394	1.304	0.251	2.253	0.384	0.152	2.319	1.548	1.642	1.744	2.573	0.776	2.051	2.561	2.837	3.549	1.838	2.905	nan	0.723	0.205	1.261	0.486	0.212	3.961
14167	chr8	37747434	37750051	+	0	NA	intron (NM_145841, intron 2 of 7)	ORR1A4-int|LTR|ERVL-MaLR	503460	NR_029884	723860		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA	5.579	0.667	0.543	5.164	3.098	0.926	4.934	4.307	4.306	5.389	1.762	0.545	11.121	7.018	5.749	6.638	5.735	5.892	0.443	0.500	0.318	0.644	0.233	0.231	nan
12761	chr6	134061820	134065500	+	0	NA	intron (NM_007961, intron 1 of 7)	RSINE1|SINE|B4	27960	NM_007961	14011	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	2.828	3.977	1.771	1.960	0.910	0.356	2.362	5.599	1.952	1.565	3.608	1.352	1.275	1.474	3.444	2.645	2.414	2.761	nan	1.502	0.920	1.563	0.653	0.494	nan
7692	chr19	29948056	29955176	+	0	NA	intron (NM_133775, intron 2 of 7)	MTEa|LTR|ERVL-MaLR	5826	NM_001164724	77125	Mm.182359	NM_133775	ENSMUSG00000024810	Il33	9230117N10Rik|Il-33|Il1f11|NF-HEV	interleukin 33	protein-coding	6.749	0.705	0.328	nan	3.328	1.783	6.403	nan	4.449	5.372	6.831	1.858	5.950	8.020	5.171	6.806	9.153	5.920	nan	0.527	0.407	0.492	nan	0.346	5.857
3267	chr12	33305371	33308274	+	0	NA	intron (NM_001033436, intron 1 of 7)	intron (NM_001033436, intron 1 of 7)	4307	NM_001033436	380753	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	1.336	nan	0.396	0.768	0.697	0.384	0.534	1.615	nan	1.327	6.865	2.496	0.768	1.246	0.719	1.045	1.254	1.096	nan	0.893	0.253	0.567	0.546	0.399	0.786
4119	chr13	51724207	51725727	+	0	NA	intron (NM_013660, intron 3 of 15)	intron (NM_013660, intron 3 of 15)	68780	NM_001281880	20354	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	3.943	0.656	0.903	1.222	1.485	1.459	6.502	4.216	0.293	0.646	0.551	0.877	4.930	4.467	3.860	3.266	5.136	2.651	0.511	nan	0.547	0.249	0.760	0.619	3.292
2647	chr11	94051362	94055609	+	0	NA	intron (NM_001025429, intron 2 of 26)	intron (NM_001025429, intron 2 of 26)	9280	NM_001025429	70834	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.633	nan	0.649	0.699	0.841	0.548	0.774	1.291	0.857	0.564	0.854	1.054	0.381	0.789	0.684	0.796	nan	0.742	3.676	nan	6.649	4.492	5.082	5.434	0.580
190	chr1	55108281	55110708	+	0	NA	Intergenic	RLTR23|LTR|ERV1	21346	NM_008303	15528	Mm.215667	NM_008303	ENSMUSG00000073676	Hspe1	10kDa|Hsp10|mt-cpn10	heat shock protein 1 (chaperonin 10)	protein-coding	8.387	8.587	2.110	11.581	4.877	2.539	6.616	7.520	7.490	10.647	6.369	4.430	9.648	8.829	8.981	15.916	6.855	10.085	4.736	1.510	1.769	5.345	2.036	2.735	11.593
9775	chr3	122326293	122328348	+	0	NA	Intergenic	Intergenic	-33617	NR_030439	791077		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	3.133	0.596	0.498	3.085	1.423	1.743	3.111	3.567	3.176	nan	1.409	1.744	5.430	5.202	3.008	4.415	3.660	4.667	1.092	0.722	0.708	1.201	nan	0.931	2.229
1808	chr10	120922666	120928019	+	0	NA	3' UTR (NM_001081193, exon 13 of 13)	3' UTR (NM_001081193, exon 13 of 13)	-26371	NM_177092	320183	Mm.169755	NM_177092	ENSMUSG00000051236	Msrb3	D430026P16Rik|I-8-23|MsrB2	methionine sulfoxide reductase B3	protein-coding	5.591	4.067	4.454	2.828	3.083	2.730	2.669	7.369	2.904	2.868	2.743	0.860	2.194	4.850	4.581	5.838	6.036	2.326	0.897	1.466	1.613	0.746	1.019	0.956	3.864
12721	chr6	127584693	127586419	+	0	NA	intron (NM_001033464, intron 1 of 6)	intron (NM_001033464, intron 1 of 6)	7581	NM_001033464	381812	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	2.137	nan	1.517	0.956	2.172	0.860	2.921	2.274	1.844	1.981	0.982	0.582	3.841	4.560	1.698	2.991	2.232	2.082	0.518	1.578	0.967	0.560	0.784	0.812	1.936
8918	chr2	160378663	160381181	+	0	NA	Intergenic	Intergenic	-12857	NM_010658	16658	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	nan	8.511	6.110	0.283	0.372	0.245	0.421	0.417	nan	nan	0.222	0.264	nan	nan	0.237	0.705	0.658	nan	nan	0.778	0.765	0.354	0.511	0.610	nan
1739	chr10	111395047	111400071	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-75633	NM_015781	53605	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	nan	0.588	0.336	4.405	7.644	4.499	8.115	6.057	nan	7.762	3.723	3.784	8.223	9.416	6.156	7.067	7.516	7.193	0.859	0.889	0.448	0.528	0.720	0.541	6.148
601	chr1	133094752	133097183	+	0	NA	intron (NM_001099276, intron 23 of 32)	B1_Mus2|SINE|Alu	-35199	NM_133819	108954	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	4.771	15.405	3.343	5.228	1.264	0.715	1.388	1.480	2.277	2.746	2.917	0.860	1.496	2.261	2.676	3.354	1.755	3.171	1.141	1.107	1.101	1.248	0.463	0.334	4.369
822	chr1	164882117	164888492	+	0	NA	Intergenic	Intergenic	22183	NR_040303	433374	Mm.251149	NR_040303	ENSMUSG00000104117	Gm20743	-	predicted gene, 20743	ncRNA	4.302	0.536	0.460	nan	1.745	0.942	3.957	4.679	nan	2.696	3.084	1.954	5.748	4.124	nan	2.885	3.175	2.850	0.698	0.689	0.451	nan	nan	0.213	nan
15659	chrX	7295470	7296457	+	0	NA	intron (NM_001243762, intron 2 of 13)	intron (NM_001243762, intron 2 of 13)	23395	NM_001243762	12728	Mm.486257	NM_016691	ENSMUSG00000004317	Clcn5	5430408K11Rik|ClC-5|Clc4-1|Clc5|Clcn4-1|D930009B12Rik|DXImx42e|Sfc13|T25545	chloride channel, voltage-sensitive 5	protein-coding	0.895	0.333	0.400	1.763	1.890	0.772	0.453	0.915	1.073	2.302	0.188	0.216	1.399	2.946	1.670	1.403	0.760	2.798	0.347	0.383	0.248	0.434	0.622	0.390	1.376
10545	chr4	128529169	128533868	+	0	NA	intron (NM_001281955, intron 55 of 70)	intron (NM_001281955, intron 55 of 70)	78580	NM_177758	269585	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding	3.149	0.928	0.812	1.253	1.497	0.977	1.783	3.813	2.741	2.660	7.977	3.054	3.202	4.795	nan	3.783	2.363	2.732	1.039	0.863	0.728	1.324	0.686	0.638	2.131
9929	chr4	10831550	10833014	+	0	NA	Intergenic	Lx3_Mus|LINE|L1	-34480	NR_045185	73624	Mm.67392	NR_045185	ENSMUSG00000086080	1700123O12Rik	-	RIKEN cDNA 1700123O12 gene	ncRNA	2.474	1.309	0.941	1.666	1.468	1.023	2.598	1.883	1.640	2.235	1.701	2.024	2.456	3.279	2.068	2.501	1.694	2.349	0.982	nan	1.225	0.965	1.618	1.484	3.426
9524	chr3	94944954	94946254	+	0	NA	TTS (NM_009150)	TTS (NM_009150)	-9411	NM_017395	53970	Mm.24308	NM_017395	ENSMUSG00000005774	Rfx5	-	regulatory factor X, 5 (influences HLA class II expression)	protein-coding	7.299	13.776	8.549	5.087	3.479	2.971	2.052	2.309	3.937	3.787	3.114	2.217	1.805	3.854	3.249	3.313	2.861	3.273	1.178	3.667	2.510	0.824	1.165	0.867	4.750
10587	chr4	130257685	130262757	+	0	NA	intron (NM_172702, intron 6 of 9)	intron (NM_172702, intron 6 of 9)	14999	NM_001253386	230779	Mm.45132	NM_172702	ENSMUSG00000023232	Serinc2	2310004K20Rik|AW121759|FKSG84|TDE2|Tde2l	serine incorporator 2	protein-coding	3.927	1.084	0.731	1.915	2.488	2.094	5.796	5.006	2.976	2.152	1.400	1.504	4.927	4.143	nan	4.791	3.141	3.510	1.818	1.274	1.561	1.329	1.855	1.864	2.216
504	chr1	109486335	109488748	+	0	NA	Intergenic	RMER15|LTR|ERVL	-495359	NM_001316743	241201	Mm.213407	NM_172853	ENSMUSG00000026312	Cdh7	9330156F07Rik|CDH7L1	cadherin 7, type 2	protein-coding	2.662	1.108	0.849	3.664	3.511	1.685	4.333	3.661	3.155	2.973	9.381	3.698	2.273	4.395	4.031	5.210	3.303	4.064	2.948	3.386	1.459	2.714	5.160	2.662	2.330
12503	chr6	95066606	95068245	+	0	NA	Intergenic	Intergenic	-50455	NM_001102670	243574	Mm.333275	NM_001008785	ENSMUSG00000030031	Kbtbd8	AU040152|SSEC-51|SSEC51|Takrp|mKIAA1842	kelch repeat and BTB (POZ) domain containing 8	protein-coding	2.887	4.035	2.195	2.233	1.476	0.926	1.359	1.732	1.225	3.089	0.458	1.204	1.845	3.637	nan	3.497	2.552	2.191	nan	nan	4.105	4.150	4.422	4.077	4.728
12427	chr6	89309909	89313094	+	0	NA	Intergenic	Intergenic	-25776	NR_131021	75131	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	-	RIKEN cDNA 4930512J16 gene	ncRNA	5.012	4.274	1.095	8.617	2.481	1.833	6.175	5.525	3.049	11.410	4.802	2.293	4.909	5.681	6.732	9.462	3.207	8.251	3.838	1.176	1.618	3.166	2.264	3.789	12.120
8249	chr2	54006440	54007792	+	0	NA	Intergenic	L1Md_F2|LINE|L1	78436	NM_023396	67874	Mm.27086	NM_023396	ENSMUSG00000075334	Rprm	2410012A13Rik|Reprimo	reprimo, TP53 dependent G2 arrest mediator candidate	protein-coding	4.679	0.370	0.366	2.802	1.197	0.276	2.370	2.820	3.934	4.272	0.311	0.295	5.713	4.195	2.381	5.097	4.633	5.947	0.399	0.427		0.338	0.340	0.158	3.889
7190	chr18	39035874	39046101	+	0	NA	intron (NM_175164, intron 1 of 22)	intron (NM_175164, intron 1 of 22)	47842	NM_175164	71302	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	4.341	0.820	0.545	3.386	2.552	0.986	4.456	3.339	2.975	3.081	1.629	1.070	3.643	nan	3.868	nan	2.164	5.109	2.746	2.578	1.018	4.051	2.982	1.357	3.400
3177	chr12	8880437	8893070	+	0	NA	Intergenic	Intergenic	-34554	NM_008640	17775	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	7.046	0.927	0.367	3.132	1.990	1.156	7.375	6.657	5.409	6.212	8.418	5.175	8.609	7.648	7.037	7.776	4.713	6.530	1.298	0.689	0.607	1.435	1.081	0.757	9.031
9194	chr3	27770164	27772087	+	0	NA	Intergenic	MIR|SINE|MIR	-60686	NM_173182	72007	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	3.667	0.587	0.497	1.782	2.332	1.292	nan	4.720	nan	0.404	3.676	0.695	3.926	6.597	2.566	5.098	3.869	4.556	1.007	0.445	0.510	1.148	0.726	0.402	4.763
3387	chr12	70673174	70677461	+	0	NA	Intergenic	Intergenic	-150197	NM_028127	319710	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	7.191	3.075	1.412	4.147	2.901	2.023	7.041	5.304	6.556	7.550	4.427	3.200	10.483	9.169	10.037	11.349	8.366	8.514	1.831	1.124	1.335	2.968	1.018	0.805	12.671
7617	chr19	18846469	18849059	+	0	NA	intron (NM_153417, intron 25 of 38)	L1Md_F2|LINE|L1	97781	NM_153417	225997	Mm.215171	NM_153417	ENSMUSG00000024727	Trpm6	CHAK2|TRPM6/CHAK2	transient receptor potential cation channel, subfamily M, member 6	protein-coding	5.413	0.854	0.495	2.863	2.976	1.056	2.147	1.461	3.201	3.840	1.015	0.976	4.079	4.409	2.407	5.760	4.377	6.137	0.474	0.619	0.226	0.525	0.322	0.268	4.834
15406	chr9	96766388	96771154	+	0	NA	intron (NR_102294, intron 1 of 2)	B4A|SINE|B4	3209	NR_102296	319707	Mm.392191	NR_102293	ENSMUSG00000101581	C430002N11Rik	-	RIKEN cDNA C430002N11 gene	ncRNA	1.986	0.653	0.612	3.453	2.944	2.257	1.813	2.502	3.969	3.877	1.736	1.729	3.112	5.443	2.581	2.602	2.580	3.009	2.851	3.272	3.273	3.791	2.362	2.099	2.302
10610	chr4	131815735	131818525	+	0	NA	intron (NM_001083119, intron 7 of 30)	B3A|SINE|B2	21148	NM_011214	19273	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding	10.407	11.380	4.670	10.206	9.549	6.344	8.787	7.587	5.501	11.023	7.753	5.037	6.537	10.371	7.639	7.940	5.879	7.785	7.171	7.474	7.247	8.060	7.115	7.590	12.008
11017	chr5	9272853	9273874	+	0	NA	intron (NM_172706, intron 1 of 21)	intron (NM_172706, intron 1 of 21)	7170	NM_172706	231014	Mm.130063	NM_172706	ENSMUSG00000056004	9330182L06Rik	Eig121l	RIKEN cDNA 9330182L06 gene	protein-coding	2.230	0.405	0.071	1.899	0.758		3.009	0.919	2.745	2.272	0.201	0.203	3.305	3.049	3.708	3.676	3.297	3.215	0.694	0.414	0.120	0.926	0.093	0.269	2.094
1966	chr11	8489765	8493113	+	0	NA	intron (NM_001083587, intron 17 of 30)	intron (NM_001083587, intron 17 of 30)	173096	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	3.894	2.464	1.713	2.099	1.868	1.465	5.005	5.227	2.822	2.409	4.039	2.940	3.331	2.705	4.275	4.528	4.397	3.070	4.311	nan	3.767	7.849	4.319	3.212	3.133
1665	chr10	96148280	96150287	+	0	NA	Intergenic	Intergenic	-76924	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	6.738	2.527	1.801	3.720	3.460	1.559	4.342	6.173	3.195	4.647	nan	1.627	5.827	5.752	5.334	6.359	4.831	4.099	nan	1.390	1.073	nan	1.481	0.748	4.635
8212	chr2	38338263	38343179	+	0	NA	intron (NM_001290646, intron 1 of 4)	intron (NM_001290646, intron 1 of 4)	1440	NM_001290646	16870	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	11.269	1.743	0.542	5.394	3.086	1.662	8.776	10.093	5.579	6.039	3.127	3.128	11.831	9.590	9.620	14.325	9.205	8.264	4.413	3.159	2.702	3.849	2.909	1.995	11.619
5446	chr15	79999394	80006441	+	0	NA	intron (NM_011057, intron 3 of 6)	intron (NM_011057, intron 3 of 6)	-3891	NR_106072	102465699		NR_106072	ENSMUSG00000099222	Mir7213	Gm27377|mmu-mir-7213	microRNA 7213	ncRNA	nan	nan	0.459	nan	1.291	0.775	5.347	9.169	2.648	nan	nan	5.669	5.599	nan	3.001	2.915	nan	2.075	3.665	2.517	3.042	nan	3.385	4.029	1.211
11718	chr5	124826782	124827699	+	0	NA	intron (NM_019536, intron 69 of 78)	intron (NM_019536, intron 69 of 78)	34981	NM_144819	215707	Mm.389693	NM_144819	ENSMUSG00000037979	Ccdc92	AW050178|D5Bwg0834e	coiled-coil domain containing 92	protein-coding	3.488	2.256	1.434	2.548	3.944	2.690	4.042	5.198	2.504	2.663	2.749	2.276	2.608	4.523	nan	1.822	1.262	3.128	2.851	3.848	3.448	3.712	3.568	3.169	1.783
3873	chr13	21263756	21274360	+	0	NA	Intergenic	B3|SINE|B2	23628	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	5.064	5.376	1.502	3.469	2.832	1.892	5.653	7.408	3.278	5.335	4.233	3.327	5.692	6.098	5.683	5.762	3.467	4.667	1.962	1.038	1.291	2.002	1.307	1.225	nan
11053	chr5	21177628	21179652	+	0	NA	Intergenic	RMER6C|LTR|ERVK	-7627	NM_175437	212167	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	3.017	2.122	1.455	2.010	2.290	1.196	2.258	2.441	2.131	2.217	1.293	1.830	2.203	2.607	2.227	2.341	2.557	3.108	5.754	3.664	3.489	3.447	8.178	7.081	2.074
8005	chr2	24418255	24419269	+	0	NA	Intergenic	Intergenic	33365	NM_177611	215632	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	1.167	0.691	0.260	0.860	0.373	0.500	1.422	3.079	1.889	1.288	6.525	3.077	3.614	3.540	1.646	1.563	0.758	1.909	1.687	0.512	0.362	0.905	1.308	0.399	0.830
13464	chr7	105455704	105459120	+	0	NA	Intergenic	Lx8|LINE|L1	24785	NM_028444	109042	Mm.3124	NM_028444	ENSMUSG00000037060	Prkcdbp	3110015B12Rik|6330514M23Rik|SRBC	protein kinase C, delta binding protein	protein-coding	7.637	4.930	1.920	8.650	6.471	4.157	5.768	9.787	5.955	8.796	4.277	3.471	7.117	9.954	7.738	8.213	6.672	7.260	nan	2.336	2.045	3.330	2.611	2.304	10.267
2252	chr11	59222878	59227786	+	0	NA	intron (NM_007476, intron 1 of 4)	intron (NM_007476, intron 1 of 4)	2830	NM_001130408	11840	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	0.902	0.814	0.244	1.449	0.441	0.266	0.425	0.508	0.852	0.650	6.720	2.049	0.459	nan	0.552	0.852	0.411	0.817	nan	0.580	0.400	0.947	0.585	0.467	nan
5751	chr16	4641028	4644484	+	0	NA	intron (NM_139307, intron 1 of 1)	intron (NM_139307, intron 1 of 1)	2811	NM_139307	246154	Mm.482140	NM_139307	ENSMUSG00000039646	Vasn	2610528G05Rik|Atia|Slitl2	vasorin	protein-coding	9.584	3.011	0.761	6.730	3.627	2.127	7.446	9.529	3.720	5.164	3.207	1.122	6.992	11.543	6.884	12.016	5.174	8.494	1.274	1.801	1.087	3.209	0.906	0.349	13.383
2506	chr11	77976588	77980629	+	0	NA	3' UTR (NM_021286, exon 17 of 17)	3' UTR (NM_021286, exon 17 of 17)	-4208	NM_174852	268448	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	9.125	13.438	3.894	10.005	3.306	2.343	11.120	9.898	7.210	12.247	10.948	5.763	9.691	12.167	12.345	14.204	6.927	11.516	5.753	3.002	nan	7.646	3.058	4.112	16.995
9618	chr3	101751631	101753133	+	0	NA	Intergenic	Intergenic	83841	NM_172295	242125	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	4.690	0.768	0.779	3.399	5.088	3.292	4.112	6.484	3.543	3.698	4.052	1.795	3.995	5.826	3.045	3.790	4.895	2.917	1.334	2.331	1.263	1.886	2.045	1.232	3.614
8720	chr2	138102902	138108350	+	0	NA	Intergenic	Intergenic	-150958	NM_001025431	228662	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	3.522	0.998	0.420	5.626	1.442	0.673	2.093	3.264	4.956	3.826	10.468	3.824	2.379	2.227	2.798	3.420	2.622	4.612	4.683	2.783	1.156	6.664	2.870	1.631	3.493
12626	chr6	115708469	115710173	+	0	NA	Intergenic	Intergenic	-32686	NM_029780	110157	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	3.345	1.316	0.730	2.901	2.283	1.186	9.019	10.039	0.830	2.142	8.006	3.088	3.058	3.566	5.562	6.061	3.621	4.298	2.410	1.632	0.863	2.006	nan	1.884	4.652
11741	chr5	125913772	125914986	+	0	NA	Intergenic	Intergenic	381961	NM_001190352	208151	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding	4.423	9.836	4.124	6.572	4.045	4.399	4.842	4.596	3.287	nan	3.347	3.012	4.247	4.302	nan	6.788	3.077	nan	nan	2.141	3.235	3.858	2.684	2.933	7.221
9326	chr3	57290679	57292248	+	0	NA	intron (NM_008536, intron 5 of 6)	intron (NM_008536, intron 5 of 6)	10456	NM_008536	17112	Mm.856	NM_008536	ENSMUSG00000027800	Tm4sf1	L6|M3s1	transmembrane 4 superfamily member 1	protein-coding	4.667	1.032	0.368	3.661	1.870	0.894	3.170	1.197	2.638	3.063	1.576	0.871	3.715	3.893	3.655	3.191	2.611	4.616	0.995	0.649	0.290	0.758	0.076	0.212	2.626
11801	chr5	136200134	136201457	+	0	NA	Intergenic	Intergenic	-1841	NM_025774	66801	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	2.481	7.810	3.876	4.065	2.585	2.169	4.062	2.840	2.028	2.291	1.392	1.571	2.379	5.052	3.745	3.196	1.432	3.125	0.801	0.929	1.018	1.001	nan	0.170	2.482
6461	chr17	27947069	27948424	+	0	NA	intron (NM_001286040, intron 1 of 24)	BC1_Mm|scRNA|scRNA	38440	NM_181413	224650	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	3.391	0.598	0.575	2.320	2.486	0.741	3.026	5.789	2.902	2.191	2.184	2.635	2.387	3.446	3.364	4.391	3.653	3.640	1.352	1.595	0.581	1.017	1.112	0.414	3.645
3122	chr11	120681749	120687137	+	0	NA	intron (NM_198223, intron 3 of 14)	intron (NM_198223, intron 3 of 14)	7782	NM_001164224	68938	Mm.294020	NM_026877	ENSMUSG00000025142	Aspscr1	1190006K01Rik|ASPC|ASPCR1|ASPL|ASPS|RCC17|TUG	alveolar soft part sarcoma chromosome region, candidate 1 (human)	protein-coding	5.450	nan	1.452	6.763	2.002	0.957	5.417	6.300	4.937	10.376	3.409	1.818	6.825	7.690	8.414	9.784	3.488	9.097	3.786	nan	2.001	5.282	1.738	2.134	12.918
15354	chr9	83003690	83007364	+	0	NA	Intergenic	MTC|LTR|ERVL-MaLR	-30038	NM_001081216	83946	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	4.086	9.730	3.960	3.272	1.446	0.632	4.342	4.525	3.663	3.929	2.299	0.908	2.391	5.305	6.105	7.173	4.277	5.777	0.906	0.777	0.635	0.763	0.452	0.173	6.777
13881	chr7	148210438	148213070	+	0	NA	Intergenic	Intergenic	2896919	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	4.103	1.931	1.379	4.862	2.629	1.993	1.532	2.298	nan	2.630	5.665	5.284	1.558	2.495	1.828	2.014	2.094	2.579	2.432	3.313	3.078	4.171	3.140	3.040	nan
9398	chr3	84287668	84289674	+	0	NA	intron (NM_001271726, intron 1 of 11)	B1_Mus2|SINE|Alu	16104	NM_001271726	80890	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	3.075	0.549	0.260	2.623	2.533	1.551	1.995	2.256	1.329	1.596	1.431	0.922	4.609	5.382	1.944	nan	4.524	1.506	nan	0.659	0.916	0.640	1.403	0.921	2.486
13541	chr7	111594173	111595399	+	0	NA	intron (NM_173739, intron 3 of 10)	intron (NM_173739, intron 3 of 10)	185191	NM_173739	233733	Mm.323322	NM_173739	ENSMUSG00000038296	Galnt18	2900011G21Rik|BC024988|Galntl4	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18	protein-coding	6.726	10.233	3.029	7.981	2.927	1.088	2.898	4.871	4.075	3.858	1.761	0.723	2.732	5.137	3.695	3.806	2.305	6.575	nan	1.289	0.535	0.828	0.619	0.372	5.392
13210	chr7	54081655	54083387	+	0	NA	Intergenic	Intergenic	-190632	NR_105746	102466619		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	nan	1.341	0.885	2.779	2.064	2.099	3.191	4.190	2.815	2.732	1.178	2.210	3.588	3.291	3.610	3.689	2.809	3.520	1.079	0.484	1.071	1.155	1.242	2.004	3.707
3368	chr12	60150127	60151228	+	0	NA	Intergenic	Lx6|LINE|L1	-931194	NM_001033156	70611	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	5.535	nan	1.212	1.723	2.343	1.904	4.291	1.343	2.167	2.256	1.681	1.330	2.430	3.743	3.558	4.049	4.946	3.367	1.050	1.150	1.003	0.431	0.599	0.699	5.106
13496	chr7	107247020	107253945	+	0	NA	Intergenic	Intergenic	41037	NM_029660	76572	Mm.128134	NM_029660	ENSMUSG00000073894	Rbmxl2	1700012H05Rik|Hnrnpg-t	RNA binding motif protein, X-linked-like 2	protein-coding	1.887	0.902	0.734	1.059	1.943	1.312	2.645	5.372	1.766	1.377	1.674	2.590	2.962	nan	2.647	nan	1.819	nan	nan	0.917	0.619	0.875	1.423	0.959	1.700
10861	chr4	144783555	144785219	+	0	NA	intron (NM_001126316, intron 1 of 3)	intron (NM_001126316, intron 1 of 3)	2196	NM_001126316	329993	Mm.297407	NM_001126316	ENSMUSG00000078504	Gm438	-	predicted gene 438	protein-coding	7.295	7.957	1.652	9.100	3.044	1.822	5.087	8.678	5.009	8.503	4.465	2.888	4.706	6.847	8.493	8.803	2.986	9.474	6.302	1.458	1.843	7.065	2.809	2.744	15.605
2401	chr11	70385276	70388701	+	0	NA	Intergenic	Intergenic	23043	NM_029231	75273	Mm.340601	NM_029231	ENSMUSG00000018921	Pelp1	4930563C04Rik|MNAR	proline, glutamic acid and leucine rich protein 1	protein-coding	2.022	1.413	0.653	2.040	2.701	1.456	1.902	4.315	2.761	2.086	7.079	3.747	2.928	4.380	2.003	1.942	1.939	2.508	0.743	0.641	0.361	0.631	nan	0.265	1.360
3994	chr13	38002859	38005157	+	0	NA	Intergenic	Intergenic	-9818	NM_025965	107513	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	2.858	nan	0.465	3.159	1.862	0.916	2.725	3.626	nan	2.232	2.430	0.821	3.303	3.998	3.678	4.515	2.635	3.303	2.140	1.243	0.950	1.626	1.930	1.362	4.464
1516	chr10	80759253	80763034	+	0	NA	intron (NM_199322, intron 1 of 27)	intron (NM_199322, intron 1 of 27)	5937	NM_199322	208266	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	8.915	21.825	7.113	9.709	3.403	1.507	2.619	5.285	3.931	4.832	4.739	3.075	2.623	5.026	5.271	5.450	2.866	6.210	nan	1.610	1.474	1.815	1.047	0.668	8.685
3733	chr12	112152890	112155183	+	0	NA	intron (NM_001097621, intron 2 of 15)	intron (NM_001097621, intron 2 of 15)	7828	NM_001097621	668303	Mm.313104	NM_001097621	ENSMUSG00000021294	Kif26a	mKIAA1236	kinesin family member 26A	protein-coding	6.272	0.970	0.415	nan	0.548	0.398	5.042	4.777	nan	nan	0.655	0.485	5.752	3.493	4.614	4.653	4.209	2.685	0.755	0.457	0.322	0.932	0.565	0.187	5.779
6779	chr17	64841099	64842389	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	-5673	NM_030031	78057	Mm.109380	NM_030031	ENSMUSG00000024088	4930583I09Rik	-	RIKEN cDNA 4930583I09 gene	protein-coding	4.994	0.441	0.249	2.024	3.699	2.898	4.654	1.004	nan	2.399	3.863	0.301	2.482	5.588	3.565	4.082	5.612	2.434	0.949	0.461	1.014	0.388	1.762	1.934	5.859
2053	chr11	30174238	30180149	+	0	NA	intron (NM_175836, intron 1 of 34)	intron (NM_175836, intron 1 of 34)	21064	NM_009260	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	4.231	0.630	0.457	2.998	2.000	0.872	1.491	1.880	2.332	2.375	1.066	0.677	1.442	2.078	2.490	3.407	nan	4.904	0.923	0.957	0.429	0.411	0.782	0.549	2.849
11394	chr5	89103444	89106132	+	0	NA	intron (NM_001197147, intron 7 of 25)	intron (NM_001197147, intron 7 of 25)	217528	NM_018760	54403	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	4.802	5.954	2.484	6.439	3.448	2.445	5.523	5.083	4.031	12.311	4.833	3.237	4.494	6.811	6.406	6.905	4.771	5.474	3.946	1.783	1.835	3.986	2.701	3.966	9.654
11032	chr5	17359580	17363709	+	0	NA	Intergenic	RMER15|LTR|ERVL	-114478	NM_027609	70935	Mm.332225	NM_027609	ENSMUSG00000058643	Speer4f1	4922502J04Rik|SPEER-4F|Speer4f	spermatogenesis associated glutamate (E)-rich protein 4F1	protein-coding	4.694	0.978	0.504	5.432	2.946	1.162	3.961	4.174	5.577	5.737	1.444	0.832	3.224	4.282	6.719	5.594	4.603	9.477	0.509	0.627	0.440	0.484	0.375	0.300	2.588
9756	chr3	121566989	121570699	+	0	NA	Intergenic	Intergenic	-36500	NM_145394	213603	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	5.452	0.498	0.456	4.061	5.919	3.862	7.765	7.016	5.257	6.841	2.549	2.353	8.758	10.384	6.064	7.026	6.900	6.372	1.326	1.684	1.084	1.724	nan	1.234	6.805
13241	chr7	70898902	70900574	+	0	NA	Intergenic	L2a|LINE|L2	-532992	NM_183261	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	3.597	5.788	1.594	9.597	1.749	1.012	1.830	4.757	3.430	6.208	5.215	4.241	3.315	5.734	3.028	2.663	0.759	3.821	2.717	0.984	1.124	3.920	2.248	2.200	3.959
4775	chr14	65718084	65719280	+	0	NA	intron (NM_028903, intron 3 of 8)	intron (NM_028903, intron 3 of 8)	52279	NM_001168318	71145	Mm.83840	NM_028903	ENSMUSG00000022032	Scara5	4932433F15Rik|4933425F03Rik|AV278087|Tesr	scavenger receptor class A, member 5	protein-coding	3.750	3.162	1.322	5.682	2.185	3.089	1.595	1.614	2.858	3.107	1.252	1.539	1.754	2.931	2.710	2.538	1.579	3.041	1.177	nan	2.664	1.890	1.515	1.801	4.025
9599	chr3	100869705	100883068	+	0	NA	intron (NM_178594, intron 2 of 5)	L1_Mus1|LINE|L1	-46107	NM_001165952	229644	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding	3.732	1.080	0.503	3.158	2.368	1.205	6.206	3.682	3.519	3.986	nan	1.335	6.528	5.197	5.925	6.484	4.301	4.932	1.647	1.037	0.688	2.022	0.944	0.563	7.207
15804	chrX	109807571	109812251	+	0	NA	Intergenic	Intergenic	-562842	NR_033597	634340	Mm.66709	NR_033597	ENSMUSG00000082853	Gm7134	EG634340	kinesin family member 18B pseudogene	pseudo	2.278	0.153	0.138	1.510	2.027	0.747	1.637	2.891	2.277	1.690	2.576	2.011	1.856	1.995	2.188	1.968	2.042	4.075	1.258	0.674	0.278	0.692	1.186	0.794	1.346
8896	chr2	157853932	157855830	+	0	NA	intron (NM_025680, intron 11 of 15)	intron (NM_025680, intron 11 of 15)	-59772	NM_198627	277432	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding	10.415	14.728	5.552	11.345	7.048	4.003	8.758	12.807	6.561	9.974	8.767	4.846	8.590	9.953	9.207	11.613	9.460	9.652	7.383	5.031	5.396	7.923	7.479	7.089	18.089
7043	chr18	15147434	15149797	+	0	NA	intron (NM_134112, intron 1 of 4)	intron (NM_134112, intron 1 of 4)	2831	NM_134112	106931	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	6.050	1.221	0.918	1.788	4.328	3.141	4.749	4.413	2.794	3.448	1.444	2.577	4.036	5.623	3.972	5.269	4.231	5.087	0.561	0.685	0.500	0.547	1.014	0.701	6.555
15096	chr9	56263798	56265807	+	0	NA	intron (NM_172924, intron 3 of 6)	intron (NM_172924, intron 3 of 6)	-103732	NM_019793	56434	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	6.114	7.785	2.344	8.057	3.833	1.791	5.629	5.570	4.591	7.971	4.947	5.464	5.320	6.451	6.608	6.315	3.269	7.551	2.207	2.609	1.095	2.858	1.267	1.261	9.644
4904	chr14	87487749	87488869	+	0	NA	intron (NM_172605, intron 10 of 13)	(TA)n|Simple_repeat|Simple_repeat	71726	NM_001253755	219249	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	4.082	0.585	0.491	1.960	1.956	1.291	1.821	2.792	3.722	3.274	2.199	1.393	4.277	3.210	2.304	nan	nan	4.448	0.505	0.453	0.305	0.881	0.299	0.014	4.143
172	chr1	52738121	52743114	+	0	NA	Intergenic	L1_Mus3|LINE|L1	-13299	NM_133829	98682	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	1.906	0.769	0.544	1.501	0.793	0.619	1.155	1.892	2.047	1.878	0.888	1.550	2.173	1.836	2.327	nan	2.316	nan	nan	3.901	2.342	5.616	4.325	2.524	1.502
9735	chr3	120885789	120892908	+	0	NA	Intergenic	Intergenic	-2616	NR_130170	320739	Mm.388474	NR_130170		6530403H02Rik	-	RIKEN cDNA 6530403H02 gene	ncRNA	5.381	0.468	0.409	3.083	1.181	0.940	4.439	3.121	3.886	nan	0.936	1.146	5.734	3.030	3.870	nan	7.947	3.957	0.630	0.986	0.473	0.558	nan	0.634	nan
7648	chr19	24103999	24106369	+	0	NA	intron (NM_001198985, intron 17 of 22)	intron (NM_001198985, intron 17 of 22)	68956	NM_001198985	21873	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	5.611	1.131	0.215	8.170	1.582	1.222	6.111	6.581	3.697	11.199	nan	0.963	4.923	7.429	6.295	8.271	5.700	7.733	nan	1.138	1.424	4.188	nan	3.386	11.294
5993	chr16	31493279	31495602	+	0	NA	Intergenic	MIRc|SINE|MIR	65687	NM_001122683	71911	Mm.293470	NM_175177	ENSMUSG00000046598	Bdh1	2310032J20Rik|AI327223|Bdh	3-hydroxybutyrate dehydrogenase, type 1	protein-coding	4.276	2.520	0.697	3.080	2.972	1.922	3.171	8.293	2.647	3.248	2.265	1.055	nan	5.167	4.870	nan	2.975	6.225	1.062	0.502	0.580	1.653	nan	0.387	7.674
9690	chr3	108012576	108014447	+	0	NA	intron (NM_010358, intron 7 of 7)	intron (NM_010358, intron 7 of 7)	4462	NM_010358	14862	Mm.37199	NM_010358	ENSMUSG00000058135	Gstm1	Gstb-1|Gstb1	glutathione S-transferase, mu 1	protein-coding	6.845	9.034	4.143	6.802	3.571	2.560	7.259	3.988	3.335	6.510	3.710	2.067	4.617	6.506	5.699	6.306	5.811	4.997	6.059	6.648	5.671	5.895	8.257	6.866	8.954
6332	chr17	12483145	12484774	+	0	NA	intron (NM_011395, intron 1 of 10)	intron (NM_011395, intron 1 of 10)	17115	NR_077217	77414	Mm.417145	NR_077216		C030013G03Rik	-	RIKEN cDNA C030013G03 gene	ncRNA	2.930	1.026	0.513	2.072	4.174	2.793	1.848	3.385	1.888	1.882	0.745	0.733	1.458	3.670	2.564	2.378	2.177	2.485	nan	0.640	0.376	0.588	0.436	0.237	2.118
8911	chr2	158560059	158562257	+	0	NA	Intergenic	Intergenic	48362	NM_001145015	545481	Mm.125371	NM_001145015	ENSMUSG00000074625	Arhgap40	C20orf95|Gm14203|OTTMUSG00000015933	Rho GTPase activating protein 40	protein-coding	3.240	17.607	6.512	4.503	1.460	0.812	0.729	0.887	2.138	2.569	1.118	0.635	nan	nan	2.225	2.291	1.192	nan	nan	1.567	1.155	1.525	0.711	0.711	2.757
5431	chr15	79571105	79573667	+	0	NA	intron (NM_010059, intron 12 of 13)	intron (NM_010059, intron 12 of 13)	-25645	NM_199080	67040	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	6.592	18.587	6.420	9.874	4.693	3.559	nan	6.531	3.609	8.835	nan	1.994	5.186	7.145	7.581	7.783	4.405	7.455	5.316	3.103	3.598	7.418	3.935	3.892	10.878
12394	chr6	86734623	86744551	+	0	NA	intron (NM_013471, intron 12 of 12)	MTD|LTR|ERVL-MaLR	-6209	NM_011818	23885	Mm.321452	NM_011818	ENSMUSG00000001157	Gmcl1	2810049L19Rik|Btbd13|DIP|Gcl|Gcl-1|glc-1|mglc-1	germ cell-less, spermatogenesis associated 1	protein-coding	7.011	2.492	1.311	nan	4.636	2.869	9.334	6.787	5.922	7.030	2.107	3.166	8.561	11.372	7.560	10.962	7.272	nan	nan	1.700	1.695	2.270	3.452	2.789	9.566
10945	chr4	150537866	150545820	+	0	NA	intron (NM_001085492, intron 11 of 22)	B2_Mm1t|SINE|B2	110331	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.287	nan	0.164	0.693	0.108	0.138	0.239	0.148	0.445	0.308	0.127	0.152	0.104	0.245	0.402	0.448	0.188	0.701	4.164	1.797	1.179	10.129	1.161	0.651	0.636
4252	chr13	75844458	75847751	+	0	NA	intron (NM_053108, intron 1 of 2)	intron (NM_053108, intron 1 of 2)	6218	NM_053108	93692	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	8.088	11.980	4.598	8.509	6.378	3.386	7.422	7.382	5.529	11.781	5.387	3.287	6.234	9.678	9.196	8.628	4.138	8.319	3.342	2.496	2.714	3.528	3.830	3.614	13.959
223	chr1	59962603	59965125	+	0	NA	intron (NM_001037725, intron 4 of 7)	RMER6A|LTR|ERVK	50858	NM_001037725	72750	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	7.340	0.916	0.765	3.614	4.764	2.095	2.929	2.861	2.968	4.192	2.291	1.027	4.734	6.273	3.671	5.984	3.231	4.690	1.234	1.726	0.641	1.110	2.547	1.593	3.434
10152	chr4	62225849	62234387	+	0	NA	Intergenic	B3|SINE|B2	-21572	NM_001290350	22696	Mm.5011	NM_009554	ENSMUSG00000028389	Zfp37	Tzn|Zfp-37	zinc finger protein 37	protein-coding	4.005	nan	0.795	2.339	4.668	3.067	nan	2.661	2.971	4.334	0.799	1.152	6.184	8.086	3.351	2.868	3.357	4.400	nan	1.647	1.223	1.584	1.114	0.950	4.759
1043	chr1	194270697	194273844	+	0	NA	Intergenic	Intergenic	-49511	NR_040477	74942	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	2.510	0.837	0.648	0.827	0.510	0.144	1.885	1.386	0.953	0.925	6.045	1.576	0.579	1.511	1.896	1.747	1.058	1.224	1.235	0.740	0.734	1.722	nan	1.715	nan
7370	chr18	70103239	70105297	+	0	NA	intron (NM_001082553, intron 2 of 6)	B3A|SINE|B2	37337	NM_001082553	80718	Mm.246753	NM_030554	ENSMUSG00000024511	Rab27b	2310021G14Rik|B130064M09Rik	RAB27B, member RAS oncogene family	protein-coding	4.535	0.433	0.226	2.872	4.170	1.976	4.711	4.034	4.291	4.180	0.543	0.363	6.846	4.501	5.823	7.174	5.871	4.940	1.234	0.632	0.608	1.076	0.423	0.624	5.691
4999	chr14	123306697	123312902	+	0	NA	intron (NM_177393, intron 27 of 43)	intron (NM_177393, intron 27 of 43)	140613	NR_045144	380934	Mm.393838	NR_045143		AA536875	Gm1591	expressed sequence AA536875	ncRNA	7.191	nan	1.282	2.961	4.764	2.809	7.604	11.573	6.013	7.782	2.351	2.507	8.038	9.425	6.564	6.774	5.247	7.098	2.137	1.332	0.878	1.603	nan	2.035	8.541
6014	chr16	32855047	32861785	+	0	NA	intron (NM_172615, intron 1 of 18)	intron (NM_172615, intron 1 of 18)	9950	NM_001200038	100502698	Mm.327319	NM_172615	ENSMUSG00000035629	Rubcn	1700021K19Rik|5330403K09|Kiaa0226|Rubicon|mKIAA0226	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	protein-coding	5.401	1.221	1.313	2.759	5.410	3.395	4.273	6.890	3.624	3.229	4.593	1.908	nan	6.774	4.754	nan	3.953	5.859	2.452	0.910	1.104	1.551	nan	2.202	4.342
14860	chr9	14004364	14006271	+	0	NA	Intergenic	Intergenic	177590	NM_176836	72826	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	3.721	2.617	1.929	2.318	1.651	0.812	4.294	4.797	1.816	2.555	5.857	1.935	2.886	4.643	5.574	5.570	2.924	4.295	2.143	2.569	1.765	2.203	3.492	2.054	5.751
4571	chr14	31404914	31412971	+	0	NA	intron (NM_011894, intron 3 of 8)	intron (NM_011894, intron 3 of 8)	8735	NM_001347585	24056	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	2.871	14.125	5.026	3.401	1.408	0.791	1.463	3.722	1.988	1.865	2.262	1.700	1.993	2.497	2.517	nan	nan	nan	1.664	0.867	0.670	nan	0.547	0.362	4.531
12708	chr6	125414742	125446652	+	0	NA	Intergenic	Intergenic	-50193	NM_198604	213522	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	6.092	nan	1.208	6.359	5.453	3.454	7.654	nan	4.624	5.401	6.212	3.764	7.406	9.039	8.208	nan	5.901	7.385	5.740	3.654	3.191	6.538	4.314	3.441	8.570
1852	chr10	127313552	127320168	+	0	NA	Intergenic	B1_Mur1|SINE|Alu	-5074	NM_001171582	216443	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	9.019	nan	0.427	2.163	1.938	1.516	6.925	7.660	3.236	3.453	1.959	1.440	7.004	8.252	7.485	7.365	7.855	5.049	1.262	1.283	1.029	1.041	nan	1.929	8.328
15811	chrX	136052390	136054439	+	0	NA	Intergenic	B1F|SINE|Alu	14822	NM_009749	12069	Mm.94160	NM_009749	ENSMUSG00000042750	Bex2	AL024066|Bex1	brain expressed X-linked 2	protein-coding	3.664	0.253	0.126	0.648	0.386	0.166	3.639	5.933	2.147	1.766	1.023	1.930	4.382	3.473	2.534	2.886	2.852	2.041	0.627	0.980	0.503	0.411	0.857	0.295	1.683
12885	chr6	148891383	148894882	+	0	NA	intron (NM_001301351, intron 2 of 17)	URR1A|DNA|hAT-Charlie	3105	NM_001301351	232560	Mm.150568	NM_181541	ENSMUSG00000030309	Caprin2	C1qdc1|Eeg1|rng140	caprin family member 2	protein-coding	7.767	9.588	2.781	nan	2.824	2.677	12.497	16.625	4.873	nan	5.553	3.857	16.585	16.804	17.995	19.115	13.805	9.376	4.739	nan	3.902	7.012	3.059	4.616	16.750
7737	chr19	36893028	36895004	+	0	NA	TTS (NM_001163635)	TTS (NM_001163635)	25583	NM_028263	72514	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	1.996	0.976	0.585	2.620	2.254	1.886	2.275	2.813	2.797	2.554	1.727	3.876	2.896	2.650	1.835	2.486	3.125	2.765	0.936	1.260	1.168	0.622	1.438	1.414	2.681
15836	chrX	139210013	139214684	+	0	NA	intron (NM_001164630, intron 3 of 6)	intron (NM_001164630, intron 3 of 6)	2304	NM_001164630	245631	Mm.131001	NM_175541	ENSMUSG00000042515	Mum1l1	9430086K21Rik	melanoma associated antigen (mutated) 1-like 1	protein-coding	3.231	0.453	0.419	1.913	1.988	1.254	4.258	3.492	3.061	3.421	0.365	0.501	4.356	4.753	4.394	5.577	4.079	3.960	1.161	1.104	0.695	0.975	0.970	0.605	4.172
5470	chr15	81392873	81394135	+	0	NA	intron (NM_133726, intron 1 of 11)	intron (NM_133726, intron 1 of 11)	6190	NM_133726	70356	Mm.180337	NM_133726	ENSMUSG00000022403	St13	1110007I03Rik|3110002K08Rik|AW555194|HIP|HOP|HSPABP|HSPABP1|PRO0786|SNC6|p48	suppression of tumorigenicity 13	protein-coding	1.333	1.446	1.576	nan	1.693	1.314	5.662	9.141	2.361	nan	nan	3.711	2.863	4.566	2.725	2.004	1.849	1.374	0.926	0.827	1.516	nan	0.877	1.071	1.530
13368	chr7	87330281	87332700	+	0	NA	intron (NM_001285833, intron 12 of 19)	intron (NM_001285833, intron 12 of 19)	84841	NM_001285833	50490	Mm.31748	NM_015760	ENSMUSG00000030562	Nox4	AI648021	NADPH oxidase 4	protein-coding	4.602	5.739	2.228	6.515	2.419	1.555	5.448	11.147	nan	4.816	8.073	4.612	6.436	7.297	7.731	6.396	3.644	5.392	7.156	3.137	3.122	8.755	5.406	4.134	7.952
13093	chr7	30968012	30969793	+	0	NA	intron (NM_001164184, intron 2 of 8)	intron (NM_001164184, intron 2 of 8)	4567	NM_001164185	54135	Mm.4067	NM_017405	ENSMUSG00000001247	Lsr	ILDR3|Lisch7	lipolysis stimulated lipoprotein receptor	protein-coding	4.308	3.434	2.178	3.036	2.876	2.530	3.867	5.383	2.207	3.425	2.113	2.213	3.577	5.175	3.870	3.924	3.155	3.218	2.213	2.335	1.595	1.664	1.591	1.664	3.789
7956	chr2	7001424	7004548	+	0	NA	intron (NM_001110231, intron 3 of 15)	B4A|SINE|B4	-74264	NR_027890	68144	Mm.483289	NM_026575		5031426D15Rik	-	RIKEN cDNA 5031426D15 gene	ncRNA	4.481	1.204	0.836	4.849	2.807	1.607	2.498	1.940	2.367	3.158	1.777	0.822	2.650	3.145	2.850	3.717	2.523	3.721	7.219	5.044	3.185	3.050	8.816	5.965	5.123
2248	chr11	59000670	59005065	+	0	NA	intron (NM_001171512, intron 89 of 103)	intron (NM_001171512, intron 89 of 103)	24774	NM_053168	94091	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	1.784	1.579	0.951	1.612	0.863	0.688	1.382	1.828	1.052	1.328	0.793	0.789	1.102	nan	1.480	1.872	1.435	1.648	6.431	4.239	2.445	6.155	4.636	3.659	nan
12523	chr6	98936702	98946778	+	0	NA	intron (NM_001347345, intron 16 of 19)	intron (NM_001347345, intron 16 of 19)	86558	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	3.000	3.064	1.924	2.906	1.987	0.933	1.702	1.676	1.618	1.645	1.544	0.587	1.338	1.851	nan	nan	1.959	2.961	nan	nan	1.220	4.357	2.404	1.694	2.106
6130	chr16	55607357	55609954	+	0	NA	Intergenic	B4A|SINE|B4	113924	NR_039578	100628589		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0.914	0.956	1.305	1.017	0.958	0.718	0.674	0.740	1.002	0.715	4.058	4.202	0.330	0.714	0.641	nan	0.745	0.701	nan	1.526	0.957	1.151	1.050	0.669	0.448
10242	chr4	87511820	87514683	+	0	NA	Intergenic	L1MA9|LINE|L1	-282711	NM_172426	76376	Mm.490487	NM_172426	ENSMUSG00000037996	Slc24a2	2810021B17Rik|6330417K15Rik|AI847460|Nckx2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	protein-coding	0.604	nan	0.261	0.608	0.205	0.132	0.335	nan	nan	0.520	0.767	0.758	0.379	0.184	0.673	0.885	0.580	0.900	1.832	nan	0.377	9.786	0.526	0.202	nan
13277	chr7	73519374	73522497	+	0	NA	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	20811	NM_001081345	244059	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	7.515	4.236	1.711	nan	6.929	3.777	8.571	8.996	6.015	6.576	6.212	3.879	10.680	12.002	7.725	7.961	5.948	7.893	1.551	1.434	1.004	1.647	1.590	1.099	9.399
11024	chr5	17060469	17064649	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-413563	NM_027609	70935	Mm.332225	NM_027609	ENSMUSG00000058643	Speer4f1	4922502J04Rik|SPEER-4F|Speer4f	spermatogenesis associated glutamate (E)-rich protein 4F1	protein-coding	5.146	0.587	0.360	2.566	3.496	1.602	7.273	5.335	4.959	4.424	2.592	2.618	6.276	7.198	7.444	6.311	5.731	5.874	0.647	0.494	0.483	0.590	0.551	0.376	4.529
9642	chr3	104475374	104477170	+	0	NA	intron (NM_001310698, intron 11 of 17)	MER31A|LTR|ERV1	35646	NM_001310698	269473	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	2.967	1.086	0.780	1.369	2.171	1.391	8.968	5.854	2.629	1.889	2.490	2.387	3.812	3.971	3.040	3.870	4.022	2.910	5.449	4.176	2.586	2.811	6.334	4.747	2.340
4957	chr14	119107218	119109540	+	0	NA	Intergenic	Intergenic	-8945	NM_001081252	66435	Mm.213406	NM_025561	ENSMUSG00000042104	Uggt2	1810064L21Rik|3110001A05Rik|3110027P15Rik|A230065J02Rik|AW047562|Ugcgl2	UDP-glucose glycoprotein glucosyltransferase 2	protein-coding	4.367	0.961	0.442	2.180	1.574	1.115	3.022	5.194	2.626	2.509	4.092	3.309	3.870	5.024	3.828	5.077	2.235	4.110	1.030	0.738	0.369	0.996	0.632	0.868	4.735
15763	chrX	91786021	91788007	+	0	NA	Intergenic	Intergenic	-4038	NM_028847	74271	Mm.141337	NM_028847	ENSMUSG00000061392	Mageb5	1700056A17Rik|mMage-b5	melanoma antigen, family B, 5	protein-coding	5.660	2.906	2.343	2.510	2.844	1.923	5.623	3.720	1.780	3.833	2.409	1.949	3.860	5.148	3.087	4.108	nan	1.971	3.507	4.305	2.619	2.077	4.946	3.402	6.030
12575	chr6	112223342	112225134	+	0	NA	Intergenic	Intergenic	13530	NR_027865	67336	Mm.378014	NR_027865	ENSMUSG00000100219	1700054K19Rik	-	RIKEN cDNA 1700054K19 gene	ncRNA	3.353	0.789	0.226	2.758	1.274	0.638	4.402	5.120	2.583	2.989	0.712	0.922	3.044	4.064	5.620	5.742	1.595	3.531	nan	2.130	0.927	7.728	1.917	1.413	4.929
5306	chr15	73429171	73432143	+	0	NA	Intergenic	Intergenic	-7466	NM_001130409	14083	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FAK|FRNK|Fadk|mKIAA4203|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	2.152	nan	1.315	nan	0.947	0.705	2.240	2.089	1.429	nan	1.700	1.220	1.549	nan	1.384	1.695	nan	1.613	3.273	0.908	0.960	3.634	2.136	1.708	2.861
1417	chr10	70809807	70812759	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	-155320	NR_045292	319646	Mm.483039	NR_045291	ENSMUSG00000037747	D630013N20Rik	-	RIKEN cDNA D630013N20 gene	ncRNA	9.339	7.584	2.098	8.571	2.832	2.039	5.037	7.369	5.090	8.818	5.732	3.032	4.734	8.250	7.471	8.570	5.651	6.383	4.879	2.124	2.363	4.632	2.545	2.868	11.636
216	chr1	59029744	59031492	+	0	NA	Intergenic	L1Md_T|LINE|L1	57047	NM_172656	227154	Mm.286006	NM_172656	ENSMUSG00000026027	Stradb	AA792893|Als2cr2|B830008M19|D1Ucla2|ILPIP|ILPIPA|PRO1038|Papk|Syradb	STE20-related kinase adaptor beta	protein-coding	9.449	11.146	2.491	12.875	2.058	1.067	6.016	7.520	5.924	11.771	4.591	3.516	8.945	7.990	9.841	16.232	5.355	11.112	4.445	1.382	2.450	7.884	1.437	2.445	15.674
7932	chr2	4535214	4537163	+	0	NA	intron (NM_001347086, intron 11 of 24)	(TAGA)n|Simple_repeat|Simple_repeat	-23566	NM_001177844	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	5.763	0.825	0.408	2.711	2.196	1.130	3.894	3.879	2.537	3.712	0.675	0.439	6.249	4.837	4.357	5.549	4.839	5.171	0.873	1.125	0.640	1.639	0.414	0.315	5.715
3351	chr12	57431444	57449812	+	0	NA	intron (NM_001164370, intron 9 of 9)	intron (NM_001164370, intron 9 of 9)	105493	NM_008259	15375	Mm.4578	NM_008259	ENSMUSG00000035451	Foxa1	Hnf-3a|Hnf3a|Tcf-3a|Tcf3a	forkhead box A1	protein-coding	9.095	nan	0.766	4.294	4.878	3.040	8.215	5.729	7.962	8.791	2.582	1.510	10.687	10.182	nan	nan	9.598	11.963	4.706	1.201	0.902	1.185	1.410	1.464	7.873
7660	chr19	24524738	24534374	+	0	NA	intron (NM_008846, intron 1 of 14)	intron (NM_008846, intron 1 of 14)	26271	NM_008846	18719	Mm.217214	NM_008846	ENSMUSG00000024867	Pip5k1b	PI4P5K-I[b]|PIP5K1-beta|PIP5KIbeta|Pipk5b|STM7	phosphatidylinositol-4-phosphate 5-kinase, type 1 beta	protein-coding	5.937	1.038	0.809	4.921	7.117	4.392	8.882	7.692	5.798	7.612	nan	0.667	8.215	9.857	8.016	8.935	8.590	9.302	nan	3.763	3.208	7.032	nan	5.340	8.784
5116	chr15	36721425	36724750	+	0	NA	Intergenic	MT2B2|LTR|ERVL	67845	NM_001253807	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	15.603	21.934	5.118	18.099	6.963	5.009	17.041	19.732	9.742	24.830	11.755	5.189	17.323	17.483	16.565	15.781	11.491	15.808	8.119	3.296	5.128	9.908	4.892	6.654	22.986
11889	chr5	140622088	140628333	+	0	NA	intron (NM_001308040, intron 12 of 12)	intron (NM_001308040, intron 12 of 12)	17869	NM_008494	16848	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	4.107	1.098	0.671	1.961	1.399	0.575	4.870	3.738	2.280	3.327	2.455	0.946	2.853	6.054	6.091	4.777	3.111	4.314	1.999	1.122	0.559	2.568	nan	0.695	6.551
10523	chr4	125893694	125897388	+	0	NA	intron (NR_015560, intron 2 of 5)	intron (NR_015560, intron 2 of 5)	26769	NR_015560	72395	Mm.112888	NR_015560	ENSMUSG00000085562	2610028E06Rik	BB043107	RIKEN cDNA 2610028E06 gene	ncRNA	3.696	1.249	1.720	2.130	5.272	4.579	4.401	4.727	3.167	2.792	3.253	2.858	3.108	4.338	nan	3.280	3.209	3.042	1.190	0.903	1.903	0.805	1.423	1.527	3.551
1951	chr11	6419977	6421679	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	4958	NM_008907	268373	Mm.5246	NM_008907	ENSMUSG00000071866	Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding	6.607	14.629	8.192	3.300	2.700	1.469	4.344	9.388	3.737	3.431	2.471	1.401	6.272	4.511	3.882	4.993	5.135	3.411	0.705	2.193	1.746	0.757	0.578	0.970	4.952
3600	chr12	88171855	88181048	+	0	NA	intron (NR_136900, intron 2 of 2)	intron (NR_136900, intron 2 of 2)	5443	NM_001105254	100039315	Mm.426539	NM_001105254	ENSMUSG00000066027	Gm10436	ENSMUSG00000072907	predicted gene 10436	protein-coding	11.817	4.728	2.141	7.840	6.619	4.939	11.006	7.729	5.879	7.644	8.340	4.813	10.158	10.860	9.217	12.176	10.626	8.115	4.642	4.191	3.858	6.320	3.811	3.386	14.719
12990	chr7	20394285	20397432	+	0	NA	Intergenic	L1_Mus1|LINE|L1	-20448	NM_001166751	667485	Mm.482056	NM_001166751	ENSMUSG00000093917	Gm8660	EG667485|Vmn1r147	predicted gene 8660	protein-coding	1.025	2.587	0.900	1.946	1.358	0.926	0.709	1.686	1.722	1.571	0.940	0.963	1.078	1.074	1.798	1.422	1.202	1.776	5.006	3.539	2.908	7.833	5.371	4.351	1.141
5326	chr15	74591790	74594580	+	0	NA	Intergenic	Intergenic	43133	NM_001177437	69439	Mm.263708	NM_001177437	ENSMUSG00000022603	Mroh4	1700016M24Rik	maestro heat-like repeat family member 4	protein-coding	2.597	2.701	0.635	3.100	1.864	0.683	5.854	13.381	5.083	5.141	6.721	4.991	5.812	6.892	9.269	7.187	4.414	4.894	1.293	0.704	0.421	nan	1.033	0.119	10.088
2766	chr11	99356851	99359926	+	0	NA	Intergenic	ORR1D1|LTR|ERVL-MaLR	-7270	NM_010666	16675	Mm.440476	NM_010666	ENSMUSG00000017588	Krt27	CK-27|Krt1-c29|mIRSa3.1|stpm	keratin 27	protein-coding	0.863	nan	0.170	0.583	0.490		0.840	2.416	1.944	1.112	2.612	4.919	1.130	1.210	0.988	1.238	nan	1.234	0.617	nan	0.239	0.284	nan	nan	0.501
9464	chr3	89099656	89111103	+	0	NA	Intergenic	B3A|SINE|B2	-3412	NM_001253751	110196	Mm.39472	NM_134469	ENSMUSG00000059743	Fdps	6030492I17Rik|AI256750|Fdpsl1|mKIAA1293	farnesyl diphosphate synthetase	protein-coding	1.863	1.571	0.989	3.947	3.594	2.829	3.221	2.810	3.923	4.945	0.841	0.905	7.055	6.374	2.752	3.561	3.151	3.191	nan	0.905	0.954	0.677	0.947	1.031	1.801
7135	chr18	35885653	35891045	+	0	NA	Intergenic	CpG	58531	NM_133687	67393	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	6.340	4.987	2.507	3.988	3.825	3.263	4.864	7.736	4.176	3.934	3.286	2.805	4.849	nan	4.783	nan	4.466	5.706	2.691	2.075	2.014	3.304	2.977	2.858	6.352
5526	chr15	85251967	85255544	+	0	NA	intron (NM_010180, intron 14 of 16)	B2_Mm2|SINE|B2	47747	NM_010180	14114	Mm.297992	NM_010180	ENSMUSG00000006369	Fbln1	-	fibulin 1	protein-coding	2.938	0.799	0.405	2.565	3.557	2.722	4.520	8.721	4.704	3.283	2.862	3.872	5.899	4.605	4.312	3.928	3.759	5.219	nan	0.938	0.696	nan	0.974	0.536	nan
3661	chr12	103557174	103560829	+	0	NA	intron (NM_028980, intron 3 of 24)	intron (NM_028980, intron 3 of 24)	26436	NM_028980	74521	Mm.248619	NM_028980	ENSMUSG00000021209	Ppp4r4	8430415E04Rik|mKIAA1622	protein phosphatase 4, regulatory subunit 4	protein-coding	5.413	1.353	0.655	6.078	2.349	1.092	1.575	2.412	nan	2.988	2.968	1.183	1.687	nan	2.301	3.303	1.520	4.185	0.925	0.675	0.532	1.331	0.787	0.441	3.122
10693	chr4	134808509	134815504	+	0	NA	intron (NM_025382, intron 7 of 10)	intron (NM_025382, intron 7 of 10)	41339	NM_025382	66146	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61	transmembrane protein 57	protein-coding	6.889	1.761	0.897	7.479	6.379	3.490	3.503	3.888	5.852	7.322	2.628	1.548	5.380	9.896	5.119	5.813	3.666	nan	3.217	2.783	1.936	3.594	nan	1.723	6.459
10065	chr4	47322422	47330318	+	0	NA	Intergenic	Intergenic	-26852	NM_001312868	21812	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	6.225	3.941	1.903	3.204	3.328	1.698	3.287	4.850	3.858	4.309	5.056	2.374	3.319	5.114	4.984	4.440	3.176	4.235	1.567	1.472	0.883	nan	0.610	0.334	5.159
1794	chr10	120319289	120320544	+	0	NA	Intergenic	RMER19B2|LTR|ERVK	-69607	NR_040626	320626	Mm.446091	NR_040626	ENSMUSG00000090191	9230105E05Rik	-	RIKEN cDNA 9230105E05 gene	ncRNA	5.793	6.533	2.470	4.606	4.844	3.416	4.064	3.197	3.968	5.007	1.867	1.700	2.712	4.182	4.848	5.943	4.595	4.236	1.516	3.044	0.811	2.084	2.864	1.886	4.599
10605	chr4	131683820	131686374	+	0	NA	Intergenic	PB1D10|SINE|Alu	153181	NM_011214	19273	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding	0.258	0.542	0.493	0.508	0.461	0.431	0.551	0.392	0.254	0.433	0.471	0.326	0.118	0.299	nan	0.529	0.229	0.510	5.936	7.289	8.958	6.005	5.320	7.262	0.534
4755	chr14	64064026	64071982	+	0	NA	Intergenic	MTE2a|LTR|ERVL-MaLR	17385	NM_001081063	71037	Mm.19977	NM_001081063	ENSMUSG00000034623	Prss55	4933401F05Rik	protease, serine 55	protein-coding	2.569	1.719	0.723	2.793	1.874	1.058	2.122	1.389	1.621	2.108	5.603	1.286	3.132	4.694	2.518	1.656	0.722	3.115	2.014	nan	0.655	2.032	1.008	0.604	5.403
12071	chr6	17358399	17360870	+	0	NA	Intergenic	Lx5c|LINE|L1	51994	NM_001243064	12389	Mm.28278	NM_007616	ENSMUSG00000007655	Cav1	Cav|Cav-1	caveolin 1, caveolae protein	protein-coding	3.448	nan	0.396	0.886	2.251	1.309	3.508	4.899	nan	1.615	4.784	2.282	2.825	1.814	1.537	nan	4.229	2.461	0.563	0.568	0.248	0.440	0.553	0.152	1.014
676	chr1	137209234	137210892	+	0	NA	Intergenic	Intergenic	-249615	NM_030676	26424	Mm.16794	NM_030676	ENSMUSG00000026398	Nr5a2	AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B	nuclear receptor subfamily 5, group A, member 2	protein-coding	10.300	8.906	3.686	nan	3.682	2.903	6.741	5.869	4.766	5.697	5.592	4.238	6.425	6.563	7.692	10.881	7.208	7.714	5.879	2.783	2.235	4.989	3.172	3.213	11.420
11641	chr5	118908478	118910103	+	0	NA	Intergenic	RLTR11C_MM|LTR|ERVK	-43049	NR_040694	74627	Mm.410828	NR_040694	ENSMUSG00000107144	4930413E15Rik	-	RIKEN cDNA 4930413E15 gene	ncRNA	5.094	2.409	1.053	6.608	8.249	5.774	6.841	3.517	6.872	7.611	8.241	6.087	5.360	6.114	5.011	5.614	3.227	5.023	nan	nan	0.971	1.022	nan	0.778	6.002
7653	chr19	24296764	24301550	+	0	NA	intron (NM_008846, intron 14 of 14)	intron (NM_008846, intron 14 of 14)	-18571	NM_008044	14297	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	9.724	2.699	1.364	nan	8.413	5.788	11.549	11.904	6.387	9.347	6.690	6.282	7.399	10.300	8.509	9.992	11.010	9.729	nan	2.853	2.599	4.817	5.177	5.121	13.856
15647	chr9	123843445	123845264	+	0	NA	intron (NM_001110253, intron 1 of 17)	intron (NM_001110253, intron 1 of 17)	7307	NM_148925	17281	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	4.678	10.166	5.236	3.072	nan	0.931	nan	1.980	nan	2.611	3.528	1.407	4.137	6.563	2.442	2.475	1.893	2.768	4.070	2.777	0.924	2.785	0.940	0.702	2.222
3191	chr12	15704993	15706312	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	95449	NR_105809	102465204		NR_105809	ENSMUSG00000098480	Mir6387	Gm27281|mmu-mir-6387	microRNA 6387	ncRNA	4.114	1.790	0.652	2.329	1.488	0.761	2.864	3.028	2.234	1.870	1.068	0.769	1.393	3.506	3.319	5.306	4.500	2.134	1.065	1.257	0.585	2.409	0.556	0.375	3.904
11808	chr5	136437540	136439391	+	0	NA	intron (NM_001291239, intron 2 of 22)	intron (NM_001291239, intron 2 of 22)	-62662	NR_030500	723975		NR_030500	ENSMUSG00000106479	Mir721	Mirn721|miRY|mir-721|mmu-mir-721	microRNA 721	ncRNA	9.658	11.033	3.210	11.058	5.036	2.191	8.324	8.262	5.896	12.354	7.567	3.550	8.240	12.492	12.213	12.095	6.264	10.524	6.213	3.019	2.676	7.928	4.658	4.239	14.181
11834	chr5	137428713	137430723	+	0	NA	intron (NM_011741, intron 35 of 87)	ID_B1|SINE|B4	47346	NM_011741	22635	Mm.7984	NM_011741	ENSMUSG00000079173	Zan	Zan-test	zonadhesin	protein-coding	7.570	3.572	1.709	6.424	3.445	3.288	6.635	5.849	4.507	5.230	5.008	3.753	6.036	8.411	7.333	7.264	6.717	6.580	3.547	1.983	3.038	2.698	nan	3.567	6.767
3306	chr12	41189616	41191455	+	0	NA	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	166445	NM_053122	93757	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	7.617	nan	0.541	3.225	2.124	1.446	4.231	3.953	3.014	2.885	0.788	0.720	3.889	3.474	5.973	7.098	4.726	5.251	nan	1.633	0.300	3.098	1.534	1.103	7.364
2640	chr11	93847633	93850643	+	0	NA	Intergenic	RMER1B|Other|Other	36628	NM_001013375	217109	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	8.006	nan	1.655	5.927	6.804	4.913	6.893	8.195	6.016	6.713	8.413	5.613	5.538	9.117	7.023	8.574	4.949	7.577	1.009	nan	1.611	1.184	nan	nan	6.349
9567	chr3	96559013	96566170	+	0	NA	TTS (NM_023719)	TTS (NM_023719)	4210	NR_040409	100038464	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	ENSMUSG00000074398|OTTMUSG00000021867	predicted gene 15441	ncRNA	5.307	1.092	0.958	2.947	5.218	3.150	7.660	3.452	5.140	4.959	nan	1.388	9.213	6.827	5.384	nan	8.427	5.558	1.090	1.383	0.818	0.724	1.193	1.217	4.288
2700	chr11	96477638	96485996	+	0	NA	intron (NM_001033186, intron 1 of 12)	RSINE1|SINE|B4	17226	NM_001177898	78473	Mm.395840	NM_001033186	ENSMUSG00000057058	Skap1	1700091G21Rik|Scap1|Skap-55	src family associated phosphoprotein 1	protein-coding	0.823	nan	0.511	1.049	0.776	0.382	0.535	0.447	0.670	0.354	0.329	0.341	0.273	0.547	0.281	0.606	nan	0.869	7.580	5.656	3.508	7.226	nan	nan	0.460
9530	chr3	95126932	95128416	+	0	NA	exon (NM_016712, exon 6 of 10)	exon (NM_016712, exon 6 of 10)	3160	NM_016712	50874	Mm.71935	NM_016712	ENSMUSG00000005628	Tmod4	MTMOD|Sk-Tmod	tropomodulin 4	protein-coding	2.147	0.989	0.266	1.661	0.810	0.378	3.378	4.090	2.528	1.839	nan	0.531	3.382	3.022	3.044	4.400	2.760	3.452	1.188	0.523	0.083	0.543	0.509	0.185	2.454
6877	chr17	80048421	80051381	+	0	NA	intron (NM_144802, intron 3 of 12)	AT_rich|Low_complexity|Low_complexity	12367	NM_144802	72692	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	3.140	0.614	0.315	3.739	3.844	3.240	nan	nan	4.496	5.118	0.482	0.470	4.708	9.634	5.725	nan	4.773	5.099	0.531	0.443	0.373	0.430	0.266	0.298	3.928
7034	chr18	12432395	12435344	+	0	NA	intron (NM_010680, intron 12 of 74)	(CTGTG)n|Simple_repeat|Simple_repeat	-70330	NM_001347461	16774	Mm.42012	NM_010680	ENSMUSG00000024421	Lama3	Lama3B|[a]3B	laminin, alpha 3	protein-coding	6.130	0.846	0.740	3.877	1.449	0.682	2.184	3.596	2.430	5.047	1.822	1.790	nan	2.630	2.969	5.851	3.242	5.675	2.283	0.748	0.462	1.909	1.223	0.764	6.814
14238	chr8	60067779	60069020	+	0	NA	Intergenic	Intergenic	242750	NR_126087	75017	Mm.60775	NR_126087	ENSMUSG00000110406	4930470O06Rik	-	RIKEN cDNA 4930470O06 gene	ncRNA	6.240	1.435	1.595	2.873	5.412	5.165	4.214	10.001	3.883	2.596	2.152	2.025	6.740	4.975	4.168	4.329	5.442	4.783	3.114	1.313	1.829	3.685	2.437	2.239	2.282
4312	chr13	98280663	98283049	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	18780	NM_001271388	68558	Mm.209642	NM_023472	ENSMUSG00000021661	Ankra2	1110004M18Rik|Ankra	ankyrin repeat, family A (RFXANK-like), 2	protein-coding	3.665	1.075	0.341	2.025	1.626	0.567	7.343	5.102	4.389	3.267	5.688	4.257	5.952	4.343	8.015	7.909	nan	4.024	10.286	3.704	2.218	11.278	6.262	4.001	4.641
13770	chr7	134536212	134537889	+	0	NA	Intergenic	Intergenic	-133637	NM_001033420	330662	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik	dedicator of cytokinesis 1	protein-coding	5.935	8.589	1.570	8.306	2.774	1.191	6.053	8.883	nan	5.935	2.926	2.109	7.974	7.609	9.192	9.124	4.877	8.153	3.842	1.503	1.624	5.145	2.007	1.165	9.958
9202	chr3	28161525	28163228	+	0	NA	Intergenic	Intergenic	-100838	NM_001163007	665113	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	2.475	5.538	1.002	7.237	0.951	0.923	3.324	6.075	3.545	3.931	5.189	4.338	2.772	5.921	4.747	2.632	1.530	nan	6.110	2.776	2.728	7.298	3.207	2.032	2.951
11297	chr5	66430922	66439416	+	0	NA	intron (NM_001201414, intron 5 of 15)	intron (NM_001201414, intron 5 of 15)	-97504	NM_001201416	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	3.639	0.647	0.537	1.551	2.584	2.215	5.930	5.087	3.445	2.730	1.501	3.337	4.316	4.110	4.968	4.634	3.342	3.941	0.804	0.827	0.674	nan	1.352	1.191	2.468
123	chr1	39373995	39376009	+	0	NA	intron (NM_018775, intron 17 of 19)	intron (NM_018775, intron 17 of 19)	7151	NM_001252218	114641	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	4.949	0.695	0.418	2.238	0.721	0.302	2.994	2.844	1.300	2.261	0.738	0.706	2.986	2.629	3.874	7.663	2.830	5.599	0.603	0.310	0.122	0.810	0.303	0.049	4.907
11663	chr5	122185826	122193733	+	0	NA	Intergenic	RSINE1|SINE|B4	-19950	NM_001042489	74096	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	3.453	0.905	0.715	1.899	3.661	3.092	3.560	4.396	3.038	3.633	2.712	1.671	3.407	5.057	3.282	3.127	4.181	2.748	nan	nan	1.025	0.530	nan	1.148	2.185
304	chr1	74339782	74352434	+	0	NA	intron (NM_019999, intron 1 of 8)	B1F1|SINE|Alu	13498	NM_019999	56695	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	12.596	3.440	1.015	10.906	6.869	4.433	8.762	10.087	7.538	8.755	9.244	5.804	9.135	11.954	9.727	15.373	7.926	11.665	nan	nan	2.090	4.982	nan	2.348	12.794
11077	chr5	24530530	24532315	+	0	NA	Intergenic	Intergenic	-4574	NM_015739	231044	Mm.246596	NM_015739	ENSMUSG00000067724	Gbx1	Gbx-1	gastrulation brain homeobox 1	protein-coding	3.539	2.309	0.733	3.271	1.832	0.792	6.558	4.957	2.190	3.828	0.931	0.844	3.529	6.676	5.386	3.921	1.813	5.665	0.964	0.647	0.481	1.955	0.525	0.266	2.799
9210	chr3	30143783	30146405	+	0	NA	Intergenic	Intergenic	-131890	NM_007963	14013	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	7.327	0.540	0.437	5.768	3.255	0.816	7.202	2.226	9.612	9.175	3.427	6.002	11.410	5.623	6.623	10.031	6.721	11.840	0.696	0.938	0.295	1.637	0.368	0.145	10.990
13853	chr7	145444409	145449522	+	0	NA	Intergenic	Intergenic	132130	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	nan	nan	0.180	nan	0.278	0.192	0.410	0.550	nan	0.326	0.247	0.258	0.411	0.226	0.173	0.542	0.520	0.460	5.688	4.258	3.330	6.448	nan	5.405	nan
5828	chr16	16525937	16527944	+	0	NA	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	471	NM_001301818	224014	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	7.646	2.135	0.665	4.327	2.885	1.471	3.949	5.588	3.367	3.503	2.257	1.684	4.726	5.049	5.902	nan	4.813	4.565	0.791	1.171	1.028	1.059	0.519	0.381	5.048
1631	chr10	94547863	94552203	+	0	NA	intron (NM_172051, intron 1 of 3)	intron (NM_172051, intron 1 of 3)	-25224	NM_001168684	319880	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	AW488095|C630016B22Rik|C88213|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	6.514	1.458	0.472	4.289	3.597	1.577	7.111	4.427	5.470	6.076	nan	1.241	6.102	8.466	8.327	6.895	5.860	7.487	nan	1.146	0.282	nan	0.780	0.403	9.020
2294	chr11	61415053	61417906	+	0	NA	Intergenic	Intergenic	37513	NM_009548	22671	Mm.89201	NM_009548	ENSMUSG00000010086	Rnf112	ZNF179|Zfp179|bfp|neurolastin	ring finger protein 112	protein-coding	1.784	2.726	1.966	1.667	2.349	2.325	1.296	1.706	1.507	1.199	1.768	4.940	1.060	nan	0.978	1.097	1.254	1.287	nan	1.375	1.040	0.978	0.620	1.138	nan
7679	chr19	28749606	28755162	+	0	NA	Intergenic	Intergenic	-72307	NM_175459	226075	Mm.223508	NM_175459	ENSMUSG00000052942	Glis3	4833409N03Rik|E330013K21Rik	GLIS family zinc finger 3	protein-coding	4.714	1.795	0.659	nan	1.145	0.745	1.167	9.276	2.231	3.268	nan	2.116	4.223	5.071	3.942	3.731	2.260	4.004	nan	0.651	0.865	2.512	nan	1.584	7.126
11906	chr5	141419988	141425688	+	0	NA	intron (NM_177879, intron 1 of 44)	intron (NM_177879, intron 1 of 44)	181304	NM_177879	330222	Mm.151931	NM_177879	ENSMUSG00000039683	Sdk1	5330440E10|6720466O15Rik	sidekick cell adhesion molecule 1	protein-coding	0.906	11.029	7.983	0.778	0.700	0.653	0.412	0.333	0.675	0.717	0.304	0.300	0.163	0.298	0.429	0.739	0.628	0.534	0.854	1.817	1.748	0.780	nan	0.942	0.604
8026	chr2	25832737	25834660	+	0	NA	Intergenic	RMER17C|LTR|ERVK	10545	NM_029959	77704	Mm.159974	NM_029959	ENSMUSG00000023210	Lcn9	9230102I19Rik	lipocalin 9	protein-coding	3.152	3.701	2.018	3.573	3.741	2.958	1.588	1.766	3.181	3.101	1.658	1.048	3.574	4.047	1.981	2.636	1.788	4.376	2.853	1.698	1.784	1.763	2.192	3.302	3.005
9391	chr3	83762428	83764294	+	0	NA	Intergenic	Intergenic	-2960	NM_009144	20319	Mm.19155	NM_009144	ENSMUSG00000027996	Sfrp2	AI851596|Sdf5	secreted frizzled-related protein 2	protein-coding	3.647	0.800	0.920	2.345	3.229	2.469	5.153	1.186	1.963	2.893	0.929	0.743	3.454	5.858	2.483	3.891	5.511	3.230	nan	0.961	0.952	0.992	0.607	0.660	3.828
839	chr1	167389065	167392952	+	0	NA	intron (NM_025569, intron 1 of 5)	B3|SINE|B2	2789	NM_025569	66447	Mm.218286	NM_025569	ENSMUSG00000026688	Mgst3	2010012L10Rik|2010306B17Rik|2700004G04Rik|AA516734|GST-III	microsomal glutathione S-transferase 3	protein-coding	11.941	8.473	3.053	10.107	6.094	3.233	8.139	8.569	nan	11.048	5.969	3.667	nan	9.631	8.937	14.588	8.983	9.713	4.832	2.610	2.710	nan	nan	5.139	13.921
14537	chr8	108146541	108148784	+	0	NA	Intergenic	RLTR17B_Mm|LTR|ERVK	437015	NR_077224	109215	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	4.976	21.537	6.566	3.571	1.453	0.691	3.147	4.594	1.681	2.831	0.949	0.820	4.263	5.320	3.647	5.645	2.693	3.422	3.785	1.781	1.493	5.004	2.595	2.095	4.915
10926	chr4	150065023	150066089	+	0	NA	Intergenic	Intergenic	-2898	NR_029751	723848		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	4.629	1.462	0.572	3.331	4.263	1.918	2.609	5.558	4.911	3.745	2.581	3.252	2.740	4.755	3.780	4.081	2.332	5.583	1.085	0.671	0.311	4.318	1.032	0.467	4.720
15694	chrX	20001750	20004568	+	0	NA	Intergenic	Intergenic	-56411	NM_021715	60322	Mm.44827	NM_021715	ENSMUSG00000037347	Chst7	2600013M07Rik|C6ST-2|GST5|Gn6st-4|glcNAc6ST-4	carbohydrate (N-acetylglucosamino) sulfotransferase 7	protein-coding	4.127	2.979	1.251	3.638	2.494	1.481	3.496	3.796	2.986	5.347	2.106	1.244	2.968	4.962	4.076	nan	3.405	4.548	2.301	1.478	1.476	2.531	1.416	2.066	6.372
12442	chr6	90641532	90643039	+	0	NA	exon (NM_027868, exon 9 of 11)	exon (NM_027868, exon 9 of 11)	23039	NM_001037493	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	2.786	1.772	0.483	2.946	1.253	0.247	2.178	2.360	2.074	4.263	0.632	0.527	4.022	5.163	4.185	8.042	2.895	3.066	nan	0.370	0.344	1.406	0.985	0.499	7.403
5175	chr15	54640829	54641968	+	0	NA	Intergenic	L1Md_A|LINE|L1	70032	NM_178920	105853	Mm.410994	NM_178920	ENSMUSG00000024479	Mal2	AI461653	mal, T cell differentiation protein 2	protein-coding	2.036	1.657	0.588	nan	0.973	0.418	2.868	1.475	1.894	1.291	2.976	1.894	3.156	3.882	3.668	1.366	1.164	1.497	1.630	1.413	0.409	1.199	2.076	1.319	0.742
5844	chr16	18424089	18430341	+	0	NA	promoter-TSS (NM_001111062)	promoter-TSS (NM_001111062)	-499	NM_001111062	12846	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	8.076	4.849	2.465	6.397	4.325	2.364	6.530	8.021	5.051	6.700	3.083	1.799	6.439	8.191	5.483	9.580	7.395	6.767	3.019	3.315	3.159	4.455	4.075	3.193	11.305
15284	chr9	71620917	71622632	+	0	NA	Intergenic	Intergenic	-29414	NM_001033208	102371	Mm.27585	NM_001033208	ENSMUSG00000041361	Myzap	AA407270|AV006038|Gcom1|Gm640|Grinl1a7|Myozap	myocardial zonula adherens protein	protein-coding	1.387	1.221	1.622	1.928	1.575	1.558	1.754	1.555	2.016	1.910	1.180	0.828	3.778	3.742	nan	2.625	1.922	2.325	nan	0.691	0.746	0.732	1.036	1.015	4.222
5278	chr15	67048312	67051104	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	-80067	NM_008681	17988	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	4.301	1.484	0.554	1.599	2.715	1.409	6.324	10.190	3.080	2.879	2.025	1.364	8.015	6.031	7.430	5.645	4.646	4.983	0.517	0.532	0.225	0.501	0.366	0.226	4.066
1829	chr10	125402566	125406299	+	0	NA	Intergenic	Intergenic	-75897	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	1.344	nan	0.487	4.208	1.214	0.469	0.506	0.536	1.521	2.554	4.579	5.521	0.812	1.639	1.402	1.912	0.750	1.683	1.164	0.992	1.215	1.475	nan	2.025	1.815
13320	chr7	80884903	80888553	+	0	NA	Intergenic	Intergenic	14541	NM_028026	71968	Mm.274226	NM_028026	ENSMUSG00000025722	Wdr73	1200011I23Rik|2410008B13Rik|AI848574|C85352	WD repeat domain 73	protein-coding	6.866	1.185	0.212	7.179	2.076	1.666	6.741	10.683	5.250	12.243	0.642	1.717	8.221	7.412	7.572	7.708	4.842	9.717	3.641	1.043	1.041	2.664	3.805	3.063	10.276
5803	chr16	11424204	11427768	+	0	NA	intron (NM_001290148, intron 4 of 13)	MIR|SINE|MIR	20338	NM_001290148	74478	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|ENSMUSG00000079738|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	2.869	2.230	0.722	3.258	2.965	1.967	2.825	4.410	2.991	3.392	2.115	1.245	3.869	5.969	4.803	5.268	3.118	5.500	1.559	0.602	0.676	1.205	0.909	0.462	5.392
3698	chr12	106800565	106804755	+	0	NA	Intergenic	Intergenic	-86336	NR_015512	71033	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA	3.783	0.726	0.188	nan	2.388	1.083	4.961	nan	nan	6.973	1.428	0.982	6.419	8.656	5.192	1.285	0.529	3.420	0.975	0.450	0.235	1.584	0.638	0.336	6.013
8039	chr2	26480734	26486304	+	0	NA	intron (NM_008714, intron 4 of 33)	intron (NM_008714, intron 4 of 33)	-13400	NR_105962	102465602		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	3.718	1.245	0.443	2.918	1.429	1.005	3.147	2.816	nan	4.779	1.062	0.819	3.926	4.836	3.268	4.992	5.448	3.632	0.761	0.920	1.020	2.073	0.716	0.987	7.373
5876	chr16	21200910	21211904	+	0	NA	intron (NM_010143, intron 1 of 15)	intron (NM_010143, intron 1 of 15)	1612	NM_010143	13845	Mm.6972	NM_010143	ENSMUSG00000005958	Ephb3	AW456895|Cek10|Etk2|HEK2|MDK5|Sek4|Tyro6	Eph receptor B3	protein-coding	4.892	0.983	0.473	3.855	3.646	2.054	6.452	7.195	3.757	nan	5.108	3.129	6.503	7.521	5.963	nan	4.663	6.879	4.931	3.372	2.493	6.290	5.039	4.411	8.267
10373	chr4	108793565	108795492	+	0	NA	Intergenic	Intergenic	-13440	NM_001347163	230597	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	3.899	3.627	5.402	4.278	6.421	6.171	2.892	2.707	4.101	3.360	2.398	1.257	3.802	5.044	2.667	3.185	1.892	3.866	1.484	3.004	2.961	1.760	1.062	1.335	2.151
14515	chr8	106929311	106931291	+	0	NA	Intergenic	RLTR25A|LTR|ERVK	-5449	NM_009229	20650	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	3.353	0.776	0.491	1.958	2.773	1.914	2.254	2.102	1.856	1.430	0.409	0.336	2.645	4.346	2.384	3.757	2.422	2.827	0.604	0.653	0.703	nan	0.467	0.831	3.025
14348	chr8	75901592	75904116	+	0	NA	intron (NM_001164235, intron 13 of 13)	L1Md_F3|LINE|L1	454160	NM_001164235	71831	Mm.443238	NM_027944	ENSMUSG00000031620	1700007B14Rik	-	RIKEN cDNA 1700007B14 gene	protein-coding	1.859	nan	0.291	1.236	4.850	2.076	nan	nan	nan	0.711	1.817	0.441	2.176	4.445	1.166	nan	0.592	1.092	0.486	0.278	0.334	nan	0.405	0.158	1.924
1918	chr11	4574208	4578555	+	0	NA	intron (NM_028860, intron 1 of 17)	intron (NM_028860, intron 1 of 17)	18434	NM_028860	74302	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	nan	1.008	0.762	2.404	1.152	0.593	1.916	4.341	2.148	2.131	2.081	2.445	1.275	2.581	2.949	2.652	1.648	2.579	5.652	nan	2.012	4.246	4.770	3.366	2.970
2755	chr11	98810632	98817512	+	0	NA	intron (NM_138660, intron 3 of 13)	HAL1M8|LINE|L1	-3983	NR_033551	100037262	Mm.442062	NR_033551	ENSMUSG00000075576	Gm12359	OTTMUSG00000006457	predicted gene 12359	ncRNA	5.778	3.208	1.308	6.544	3.252	2.323	4.091	4.744	2.848	3.681	2.817	1.531	1.913	4.478	3.588	3.674	nan	3.842	2.418	nan	3.825	4.793	nan	nan	5.070
9837	chr3	137887587	137889716	+	0	NA	intron (NM_001033155, intron 2 of 7)	ID_B1|SINE|B4	20976	NM_001033155	70604	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	0.378	nan	0.234	0.987	0.110	0.105	nan	1.135	0.401	0.386	1.056	2.771	0.505	0.529	1.117	0.571	0.472	0.650	2.429	3.339	2.462	4.962	2.376	2.437	0.603
3237	chr12	25823458	25828961	+	0	NA	Intergenic	Intergenic	384296	NR_131149	629481	Mm.390460	NR_131149		Gm29687	-	predicted gene, 29687	ncRNA	4.531	2.739	1.126	1.613	0.721	0.477	5.527	4.912	1.498	1.372	0.840	0.634	2.684	2.053	6.674	5.657	2.440	2.002	0.605	0.496	0.290	1.376	0.382	0.189	5.056
4487	chr14	18523291	18524654	+	0	NA	Intergenic	L1_Mus2|LINE|L1	-192128	NM_009455	22194	Mm.4429	NM_009455	ENSMUSG00000021774	Ube2e1	UbcM3|Ubce5|ubcM2	ubiquitin-conjugating enzyme E2E 1	protein-coding	3.615	0.381	0.232	1.665	0.836	0.471	1.943	3.938	1.441	0.904	1.150	0.525	5.960	3.565	4.605	6.115	4.173	3.434	0.541	0.688	0.253	nan	0.368	0.402	5.111
3150	chr12	3368136	3372267	+	0	NA	intron (NM_008445, intron 1 of 7)	B3|SINE|B2	5069	NM_008445	16570	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	5.380	1.607	1.412	1.393	1.113	0.600	8.946	4.264	2.331	1.828	0.886	0.823	3.475	3.653	5.352	5.964	5.134	3.034	1.174	0.869	0.338	0.982	1.316	0.715	6.702
4678	chr14	55313046	55314957	+	0	NA	Intergenic	Intergenic	91994	NM_027790	71412	Mm.85484	NM_027790	ENSMUSG00000022209	Dhrs2	5430405K24Rik|Hep27	dehydrogenase/reductase member 2	protein-coding	3.784	nan	0.197	3.072	1.303	0.998	3.292	3.467	2.980	3.169	1.180	0.970	3.835	6.297	4.198	5.759	2.949	4.179	1.275	0.499	0.449	0.520	1.433	0.996	7.034
11930	chr5	144982584	144984902	+	0	NA	TTS (NM_001013774)	TTS (NM_001013774)	-17913	NM_029438	75788	Mm.27735	NM_029438	ENSMUSG00000038780	Smurf1	4930431E10Rik|mKIAA1625	SMAD specific E3 ubiquitin protein ligase 1	protein-coding	9.048	7.922	2.327	9.522	5.006	2.369	11.308	10.881	7.579	7.759	4.799	5.012	6.197	10.460	10.338	11.753	5.261	8.854	4.585	3.090	2.672	3.881	3.249	2.672	9.726
703	chr1	138569100	138576972	+	0	NA	intron (NM_001311148, intron 1 of 7)	intron (NM_001311148, intron 1 of 7)	46721	NM_021605	59125	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	5.605	2.747	1.496	nan	4.454	4.137	7.061	3.660	3.778	3.244	2.944	2.542	5.713	5.294	4.835	6.635	4.860	5.027	1.159	1.211	1.205	0.803	0.917	1.158	3.734
2729	chr11	97558802	97565946	+	0	NA	intron (NM_018873, intron 1 of 19)	ID_B1|SINE|B4	12752	NM_018873	56013	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	6.713	nan	1.755	7.255	3.644	1.695	6.503	6.536	4.139	7.979	4.682	3.252	6.089	8.813	7.946	8.746	nan	7.053	4.333	nan	2.499	6.830	nan	nan	10.115
3164	chr12	7822697	7828235	+	0	NA	Intergenic	Lx5b|LINE|L1	-152211	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	4.777	0.509	0.451	1.265	0.551	0.492	6.616	4.938	2.669	2.559	0.412	0.836	9.273	4.799	5.511	5.661	3.737	5.150	0.470	0.453	0.221	0.471	0.517	0.407	1.955
5575	chr15	93228298	93230190	+	0	NA	Intergenic	Intergenic	45840	NM_001033275	223827	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	7.039	8.945	5.033	7.696	4.257	4.529	7.894	8.466	4.175	8.448	4.534	3.213	7.416	6.796	7.145	7.222	6.681	8.016	4.160	4.169	4.865	4.227	4.414	5.925	11.004
15652	chrX	5974746	5980662	+	0	NA	Intergenic	B4A|SINE|B4	-69803	NM_021431	58242	Mm.41198	NM_021431	ENSMUSG00000073295	Nudt11	DIPP3|DIPP3b	nudix (nucleoside diphosphate linked moiety X)-type motif 11	protein-coding	3.664	0.436	0.131	2.157	1.426	1.030	3.373	2.662	2.311	4.854	1.251	0.962	3.573	3.308	3.677	4.698	2.790	4.032	0.361	0.403	0.386	0.326	0.293	0.209	6.315
9749	chr3	121347888	121351964	+	0	NA	intron (NM_024178, intron 3 of 3)	intron (NM_024178, intron 3 of 3)	58109	NM_024178	66789	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	5.146	1.367	0.215	4.348	5.050	2.109	8.094	6.193	4.883	5.204	3.691	3.201	7.385	7.765	6.198	5.770	2.906	8.281	1.177	0.443	0.355	0.680	nan	0.388	nan
9551	chr3	95962969	95967449	+	0	NA	Intergenic	Intergenic	-20301	NR_045872	668224	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	6.053	2.270	0.988	4.600	5.395	2.541	10.011	9.965	4.658	4.504	6.720	3.795	7.233	9.299	8.002	8.639	6.476	7.770	2.901	1.719	1.050	2.040	4.101	2.587	6.766
11212	chr5	44228112	44229684	+	0	NA	Intergenic	Intergenic	-2292	NM_173764	231225	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	3.086	1.302	0.954	1.769	2.782	1.146	2.492	2.946	1.888	1.590	1.545	0.599	2.171	3.733	2.606	2.874	2.359	3.453	0.714	0.676	0.546	0.410	0.956	0.479	2.214
7228	chr18	50169061	50179745	+	0	NA	intron (NM_008292, intron 17 of 23)	intron (NM_008292, intron 17 of 23)	46202	NM_008292	15488	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	1.673	11.051	7.702	1.480	0.733	0.617	0.957	1.445	1.550	1.271	2.829	2.449	0.865	1.295	1.017	0.906	0.854	nan	0.843	1.175	0.895	0.724	1.035	0.840	1.131
6897	chr17	83749492	83752399	+	0	NA	intron (NM_001171053, intron 4 of 13)	Lx7|LINE|L1	44782	NM_001171052	116871	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	7.344	10.996	3.528	7.999	3.957	2.451	7.609	5.667	nan	9.233	4.732	3.645	6.327	7.862	8.234	10.871	6.073	7.257	3.070	2.303	1.652	3.817	3.379	2.779	10.512
3304	chr12	41171739	41177390	+	0	NA	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	150474	NM_053122	93757	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	9.330	nan	0.942	6.825	3.809	2.368	8.034	6.552	nan	7.635	2.237	1.970	7.784	9.416	9.871	10.444	6.883	7.510	nan	1.246	0.868	2.823	0.966	0.583	14.896
1461	chr10	77067341	77070676	+	0	NA	intron (NM_009929, intron 25 of 41)	B2_Mm2|SINE|B2	35796	NM_031196	20509	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding	7.534	10.642	2.966	8.098	3.085	1.553	4.605	5.930	4.443	8.158	5.885	2.611	6.125	7.332	7.667	9.289	4.479	7.965	4.071	1.558	1.649	5.171	2.463	2.365	11.790
13338	chr7	82997050	83001398	+	0	NA	Intergenic	ORR1B2|LTR|ERVL-MaLR	-27833	NR_045855	71285	Mm.76818	NR_045855	ENSMUSG00000109106	4933430H16Rik	-	RIKEN cDNA 4933430H16 gene	ncRNA	3.119	2.694	0.539	3.622	1.953	1.323	3.386	5.679	2.470	3.237	2.079	0.799	3.291	3.681	3.670	4.601	3.233	6.417	1.384	1.114	0.957	nan	1.466	0.459	8.694
12535	chr6	99165955	99168350	+	0	NA	intron (NM_001347345, intron 4 of 19)	intron (NM_001347345, intron 4 of 19)	99363	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	1.696	0.903	0.866	1.301	2.775	1.498	2.135	3.626	3.777	2.617	1.474	2.126	2.292	3.947	3.904	5.016	2.513	2.442	nan	nan	0.769	0.979	0.882	0.961	1.957
2487	chr11	76732813	76734746	+	0	NA	intron (NM_016810, intron 8 of 8)	intron (NM_016810, intron 8 of 8)	29776	NM_016810	53334	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	nan	0.609	0.618	0.793	0.112	0.190	nan	0.811	0.697	0.603	5.614	3.043	0.172	nan	nan	nan	0.284	nan	0.633	0.252	nan	0.263	0.449	0.243	0.418
3188	chr12	14307124	14310314	+	0	NA	Intergenic	Intergenic	47185	NR_045003	791361	Mm.217963	NR_045003		Gm16497	ENSMUSG00000066623	predicted gene 16497	ncRNA	4.437	0.496	0.124	2.118	1.273	0.271	2.529	3.101	3.407	1.934	6.188	3.612	4.711	3.734	4.016	3.568	4.121	3.603	2.880	0.674	0.423	2.037	0.710	0.241	2.697
7322	chr18	64811824	64821709	+	0	NA	Intergenic	Charlie15b|DNA|hAT-Charlie	-70990	NM_001114386	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	4.688	1.143	0.455	3.347	2.098	1.365	5.794	6.514	3.241	4.705	1.882	2.081	6.577	6.196	5.260	5.049	3.544	3.977	6.279	3.421	2.781	6.247	5.199	4.311	5.478
15249	chr9	69284032	69285039	+	0	NA	intron (NM_013646, intron 2 of 10)	intron (NM_013646, intron 2 of 10)	-5306	NM_001289916	19883	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	1.946	0.348	0.096	2.990	0.607	0.358	1.429	5.143	2.675	2.256	0.691	0.606	2.757	3.033	3.156	2.594	3.036	4.531	nan	0.359	0.199	0.583	0.519	0.186	1.443
13966	chr8	3408589	3409608	+	0	NA	intron (NM_133962, intron 1 of 19)	intron (NM_133962, intron 1 of 19)	16090	NM_133962	102098	Mm.170461	NM_133962	ENSMUSG00000004568	Arhgef18	AI467246|D030053O22Rik	rho/rac guanine nucleotide exchange factor (GEF) 18	protein-coding	1.653	0.411	0.565	1.574	1.952	1.823	1.977	3.719	2.508	1.167	6.750	2.097	2.357	3.142	2.104	2.148	1.900	3.330	0.847	0.337	0.468	0.642	0.636	0.600	1.926
15755	chrX	73084432	73090688	+	0	NA	intron (NM_001110784, intron 7 of 8)	intron (NM_001110784, intron 7 of 8)	-5053	NM_001081642	434794	Mm.104764	NM_001081642	ENSMUSG00000079845	Xlr4a	-	X-linked lymphocyte-regulated 4A	protein-coding	4.532	0.352	0.126	3.129	4.921	3.263	3.143	nan	4.515	4.331	4.266	2.384	4.330	5.897	3.906	4.418	3.219	5.356	0.874	0.942	0.451	0.510	0.552	0.460	2.444
10481	chr4	122636742	122640108	+	0	NA	Intergenic	Intergenic	-50834	NM_023865	77432	Mm.491436	NM_023865	ENSMUSG00000023263	9530002B09Rik	Aump|Vpp1|Vppl	RIKEN cDNA 9530002B09 gene	protein-coding	4.592	4.368	2.189	2.818	2.837	1.753	1.862	0.959	4.181	6.848	3.002	1.836	1.376	5.295	2.999	1.788	2.179	3.746	2.109	5.125	4.587	3.521	1.033	0.721	10.355
9581	chr3	97827854	97831789	+	0	NA	intron (NM_001039376, intron 3 of 46)	intron (NM_001039376, intron 3 of 46)	58886	NM_001289702	83679	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	6.564	2.761	1.418	8.448	5.434	3.244	4.964	4.414	5.026	5.457	5.686	3.278	5.897	8.821	6.199	7.705	6.128	7.981	1.046	2.294	1.119	1.222	0.836	0.723	7.298
13443	chr7	99120842	99122609	+	0	NA	intron (NM_178635, intron 1 of 14)	B2_Mm2|SINE|B2	19419	NM_178635	78610	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	1.145	0.452	0.373	1.426	1.336	0.381	1.763	1.223	2.510	2.908	0.191	0.278	2.487	3.528	2.721	1.402	1.790	3.770	nan	0.049	0.027	0.236	0.148	0.053	0.725
1691	chr10	99087565	99091658	+	0	NA	Intergenic	Intergenic	-17560	NM_027740	382406	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	1.866	0.547	0.240	1.104	0.298	0.217	3.918	1.367	2.381	1.487	6.196	4.807	1.604	1.196	1.775	2.929	2.081	1.940	nan	0.371	0.228	nan	0.335	0.247	1.827
5505	chr15	83270593	83286087	+	0	NA	Intergenic	(CACCAT)n|Simple_repeat|Simple_repeat	-26566	NM_001004150	239559	Mm.323805	NM_001004150	ENSMUSG00000047878	A4galt	-	alpha 1,4-galactosyltransferase	protein-coding	7.481	2.577	1.705	nan	3.818	2.241	7.119	9.162	4.505	5.163	2.656	2.602	6.431	7.000	nan	5.847	5.898	7.034	nan	1.320	0.671	nan	0.942	0.652	5.977
2003	chr11	20100577	20103141	+	0	NA	intron (NM_146243, intron 1 of 8)	MTC|LTR|ERVL-MaLR	11092	NM_146243	66713	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	nan	12.238	7.790	10.669	13.327	10.223	10.500	10.735	7.344	12.969	8.059	5.983	7.764	14.371	9.367	10.151	11.026	nan	6.403	5.975	5.326	4.998	7.066	7.670	10.526
3666	chr12	103657646	103664874	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-4042	NM_007618	12401	Mm.290079	NM_007618	ENSMUSG00000060807	Serpina6	Cbg	serine (or cysteine) peptidase inhibitor, clade A, member 6	protein-coding	9.933	1.875	1.058	nan	5.571	3.759	4.957	3.996	nan	nan	1.496	1.416	5.989	7.686	5.683	7.691	7.429	5.442	0.810	1.255	1.156	2.212	0.592	0.453	9.346
11412	chr5	91053377	91055815	+	0	NA	Intergenic	L1_Mur3|LINE|L1	-20021	NM_007950	13874	Mm.4791	NM_007950	ENSMUSG00000029377	Ereg	EPR	epiregulin	protein-coding	1.936	5.390	3.192	2.004	3.067	2.468	1.780	3.629	4.345	2.986	2.477	2.107	5.990	5.043	2.412	2.257	0.792	4.277	0.937	0.712	0.736	0.878	0.620	0.277	1.219
11002	chr4	155565233	155572758	+	0	NA	intron (NM_001159637, intron 1 of 11)	intron (NM_001159637, intron 1 of 11)	5180	NM_001159637	192185	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	5.382	2.081	0.692	5.216	2.719	1.781	5.601	6.660	3.124	5.573	4.861	2.153	5.116	6.914	5.734	6.866	2.919	6.933	1.590	0.671	0.849	2.548	0.764	0.966	10.151
10882	chr4	148119839	148121452	+	0	NA	intron (NM_027426, intron 1 of 6)	intron (NM_027426, intron 1 of 6)	10053	NM_027426	70433	Mm.275288	NM_027426	ENSMUSG00000029005	Draxin	2610109H07Rik|neucrin	dorsal inhibitory axon guidance protein	protein-coding	0.482	nan	0.408	0.752	0.487	0.243	0.774	0.618	0.507	0.387	0.441	0.459	0.446	0.224	0.988	1.180	0.251	1.159	5.671	2.009	1.939	5.074	6.017	5.970	0.855
7661	chr19	24542037	24553001	+	0	NA	intron (NM_008846, intron 1 of 14)	intron (NM_008846, intron 1 of 14)	8308	NM_008846	18719	Mm.217214	NM_008846	ENSMUSG00000024867	Pip5k1b	PI4P5K-I[b]|PIP5K1-beta|PIP5KIbeta|Pipk5b|STM7	phosphatidylinositol-4-phosphate 5-kinase, type 1 beta	protein-coding	4.957	2.505	1.020	nan	5.949	3.722	4.496	nan	4.310	7.379	nan	1.288	4.355	6.487	4.801	5.695	5.733	6.419	nan	2.258	1.613	3.267	nan	2.601	5.877
13499	chr7	107607848	107616473	+	0	NA	intron (NM_001163557, intron 1 of 25)	MLT1B|LTR|ERVL-MaLR	5316	NM_001163557	19024	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	4.864	3.233	0.981	10.003	4.442	1.982	2.851	5.910	4.956	6.091	3.329	2.208	5.514	5.801	6.605	5.745	3.694	6.020	nan	2.428	1.526	4.954	2.265	1.065	5.215
1801	chr10	120754279	120755545	+	0	NA	Intergenic	L1_Mur3|LINE|L1	-10820	NR_038000	70874	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	3.059	1.488	1.795	4.926	3.633	2.595	1.096	1.355	6.103	3.875	0.546	1.222	2.441	2.024	2.691	5.043	3.369	4.923	1.349	0.684	1.306	0.808	1.026	0.801	1.953
12628	chr6	115786718	115788756	+	0	NA	intron (NM_025958, intron 7 of 14)	intron (NM_025958, intron 7 of 14)	12080	NR_106120	102466841		NR_106120	ENSMUSG00000099163	Mir7660	Gm27712|mmu-mir-7660	microRNA 7660	ncRNA	2.420	1.988	0.996	2.700	1.189	0.749	4.175	5.264	1.510	1.602	0.761	0.490	2.332	4.421	4.574	4.809	3.389	3.304	4.321	1.528	0.781	3.507	nan	2.257	2.940
3074	chr11	119128651	119131206	+	0	NA	Intergenic	Intergenic	24209	NR_105899	102465563		NR_105899	ENSMUSG00000098704	Mir6934	Gm27523|mmu-mir-6934	microRNA 6934	ncRNA	4.232	4.521	1.167	7.127	2.442	1.352	4.803	4.699	3.750	5.640	2.383	1.344	4.615	6.839	6.863	8.199	2.859	6.309	2.533	nan	0.681	3.136	1.457	1.073	7.286
13697	chr7	126043506	126047238	+	0	NA	intron (NM_001101488, intron 1 of 6)	intron (NM_001101488, intron 1 of 6)	37039	NM_001101488	269994	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	1.907	0.806	0.561	1.441	1.404	1.082	2.095	2.858	2.131	1.441	7.988	5.123	1.726	1.459	nan	2.578	1.627	2.570	0.983	0.526	0.784	1.124	0.674	0.832	2.260
15752	chrX	71557814	71559418	+	0	NA	intron (NM_001293623, intron 3 of 4)	intron (NM_001293623, intron 3 of 4)	2699	NM_001293625	15354	Mm.336087	NM_008253	ENSMUSG00000015217	Hmgb3	Hmg2a|Hmg4	high mobility group box 3	protein-coding	4.547	6.010	2.714	6.436	5.110	3.561	3.906	5.365	4.121	6.085	3.547	3.023	3.734	5.023	5.414	6.249	3.034	5.220	3.286	2.218	3.365	4.199	2.841	3.107	7.261
12317	chr6	72208942	72269836	+	0	NA	Intergenic	Intergenic	-3812	NM_153778	71093	Mm.87449	NM_153778	ENSMUSG00000037621	Atoh8	4933425C05Rik|Hath6|Math6|bHLHa21|okadin	atonal bHLH transcription factor 8	protein-coding	6.896	0.789	0.451	5.314	6.011	4.030	12.400	10.893	6.324	8.216	2.809	2.552	10.611	13.681	9.525	11.469	8.734	8.238	0.890	1.020	0.951	1.007	0.958	0.857	8.431
1178	chr10	23880781	23889835	+	0	NA	Intergenic	Intergenic	-9380	NM_011704	22361	Mm.27154	NM_011704	ENSMUSG00000037440	Vnn1	V-1	vanin 1	protein-coding	4.386	5.376	3.665	2.469	2.695	1.716	3.041	3.037	2.698	2.425	7.614	2.996	2.514	4.080	2.865	2.785	2.480	2.821	2.117	2.518	1.599	1.977	2.461	1.633	2.853
3163	chr12	5309846	5313539	+	0	NA	intron (NM_001164493, intron 1 of 13)	intron (NM_001164493, intron 1 of 13)	63990	NM_001164493	208439	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	4.035	1.463	0.673	3.828	2.738	1.369	2.280	1.627	3.391	5.247	0.445	0.521	4.524	7.669	3.342	2.441	2.311	5.222	1.053	0.788	0.332	0.796	0.867	0.346	3.031
6459	chr17	27928427	27931895	+	0	NA	intron (NM_001286040, intron 1 of 24)	B4A|SINE|B4	20855	NM_181413	224650	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	5.906	1.164	1.520	4.247	5.871	5.879	6.751	5.929	5.671	5.440	5.444	5.510	6.608	7.743	5.017	6.116	10.077	4.859	1.979	2.014	2.782	2.294	1.534	2.106	5.995
6862	chr17	75863187	75873809	+	0	NA	intron (NR_033456, intron 2 of 4)	intron (NR_033456, intron 2 of 4)	7475	NR_033456	100043885	Mm.127562	NR_033456		Gm4710	-	predicted gene 4710	ncRNA	1.126	11.003	6.114	1.757	0.650	0.256	nan	nan	nan	0.934	0.685	0.539	0.532	0.695	1.422	nan	1.149	1.513	0.592	0.755	0.509	0.898	0.418	0.294	0.899
14132	chr8	35004672	35021110	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	-47201	NM_175091	21951	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	7.749	1.924	1.296	4.690	7.408	5.206	7.096	9.108	5.099	5.341	3.895	2.560	8.266	9.587	7.601	7.444	6.983	6.859	1.609	1.186	1.005	1.021	2.408	2.297	7.570
13938	chr7	151224665	151227108	+	0	NA	Intergenic	Intergenic	5911051	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	nan	nan	0.357	nan	0.256	0.204	2.301	2.859	nan	0.510	1.365	0.247	1.442	1.920	1.368	1.579	1.436	1.122	2.448	3.517	1.291	6.247	nan	0.392	2.024
458	chr1	93430201	93431627	+	0	NA	intron (NM_001301364, intron 7 of 27)	intron (NM_001301364, intron 7 of 27)	14787	NM_001301364	110611	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	3.955	nan	0.812	1.277	0.081	0.254	8.730	1.563	0.815	0.924	0.804	0.560	4.939	4.270	4.004	7.587	3.922	2.036	nan	0.487	0.086	nan	0.422	0.273	3.066
10374	chr4	108806640	108811698	+	0	NA	Intergenic	Intergenic	24415	NM_027453	70533	Mm.379178	NM_027453	ENSMUSG00000028568	Btf3l4	4632412E09Rik|5730434I03Rik|AI316863|AU022207|AW552446	basic transcription factor 3-like 4	protein-coding	5.436	2.982	2.977	3.528	8.917	6.428	3.894	3.733	4.299	3.869	3.252	1.418	4.430	7.286	4.070	4.322	3.132	5.761	1.346	1.602	1.236	0.905	0.789	0.613	3.539
15042	chr9	46021403	46026586	+	0	NA	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	11174	NM_027498	70661	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	2.699	0.959	0.595	0.955	0.593	0.270	3.358	6.441	1.581	1.947	1.988	1.178	3.070	3.964	5.336	5.634	2.993	3.119	1.006	0.803	0.702	nan	0.568	0.434	4.021
7004	chr18	6275002	6281967	+	0	NA	Intergenic	Intergenic	-36960	NM_008448	16573	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	nan	1.443	0.948	1.933	2.709	1.550	1.738	3.523	3.066	2.951	4.687	3.303	nan	3.403	2.329	2.332	1.735	3.581	6.960	5.571	4.143	6.878	13.811	10.324	2.694
4361	chr13	103665403	103673468	+	0	NA	intron (NR_136924, intron 1 of 3)	intron (NR_136924, intron 1 of 3)	38198	NR_136924	102632492	Mm.383874	NR_136924		Gm30551	Gm30710	predicted gene, 30551	ncRNA	nan	nan	1.872	2.898	3.142	1.650	1.806	4.005	nan	nan	3.192	2.534	2.198	2.907	2.886	3.647	1.884	nan	4.443	2.383	1.788	nan	3.522	2.710	2.890
10097	chr4	55015904	55019135	+	0	NA	intron (NM_172867, intron 5 of 12)	intron (NM_172867, intron 5 of 12)	69574	NM_172867	242466	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	3.086	nan	0.438	1.833	0.744	0.420	2.623	4.921	1.625	1.777	2.456	0.861	3.524	4.391	2.844	4.434	1.261	3.479	2.596	1.570	0.531	4.472	1.816	0.810	2.198
5499	chr15	83133687	83137333	+	0	NA	intron (NM_001347082, intron 2 of 7)	intron (NM_001347082, intron 2 of 7)	-12709	NM_029101	74778	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	4.837	2.986	0.704	7.883	1.543	0.642	nan	4.269	nan	2.798	4.394	2.809	1.490	2.265	nan	3.079	nan	4.836	nan	1.195	1.345	3.472	0.571	0.655	4.195
5521	chr15	85172730	85183163	+	0	NA	Intergenic	Intergenic	-21814	NR_040360	100502602	Mm.390830	NR_040360		Gm19277	-	predicted gene, 19277	ncRNA	4.843	0.911	0.508	nan	4.387	3.097	nan	9.238	nan	4.086	1.888	1.737	7.798	6.728	nan	nan	5.981	nan	nan	0.751	0.449	nan	0.633	0.529	nan
14109	chr8	28114529	28121419	+	0	NA	Intergenic	Intergenic	-33121	NR_033590	666422	Mm.484413	NR_033590	ENSMUSG00000110372	Gm8096	EG666422	3-phosphoglycerate dehydrogenase pseudogene	pseudo	6.839	nan	0.341	2.351	3.405	1.715	3.784	3.332	3.588	4.548	1.444	0.741	6.282	5.363	2.963	5.129	6.323	5.166	0.422	0.777	0.307	nan	0.594	0.436	5.646
15159	chr9	61215936	61225652	+	0	NA	Intergenic	Intergenic	73015	NR_045334	622037	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	6.460	7.720	1.924	7.581	2.980	1.616	5.977	nan	5.337	10.090	6.551	4.100	4.865	7.907	6.238	7.482	4.710	6.537	4.593	2.839	2.909	6.526	2.621	3.121	11.783
2507	chr11	77987606	77993877	+	0	NA	intron (NM_174852, intron 2 of 14)	B3|SINE|B2	7925	NM_174852	268448	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	5.269	9.553	3.997	5.782	4.367	3.232	5.402	7.073	4.186	6.640	4.649	2.491	6.052	8.620	6.518	7.702	4.069	6.024	2.991	2.446	nan	4.132	2.859	2.520	7.302
9736	chr3	120961736	120967662	+	0	NA	Intergenic	Intergenic	-77967	NR_130170	320739	Mm.388474	NR_130170		6530403H02Rik	-	RIKEN cDNA 6530403H02 gene	ncRNA	3.184	0.650	0.289	3.294	0.838	0.295	2.945	5.167	1.836	nan	0.554	0.455	3.118	2.769	3.975	4.739	4.077	3.594	2.480	1.285	0.909	3.215	nan	1.361	8.340
14614	chr8	114059970	114065664	+	0	NA	Intergenic	Intergenic	-70757	NM_024446	67528	Mm.27889	NM_024437	ENSMUSG00000031767	Nudt7	1300007B24Rik|2210404C19Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 7	protein-coding	6.850	5.272	1.361	7.944	3.523	1.840	3.369	5.238	4.134	6.928	3.296	3.357	4.678	5.324	5.855	6.805	4.115	7.339	6.047	4.497	3.259	9.761	4.448	3.956	8.232
11859	chr5	138525853	138528227	+	0	NA	Intergenic	Lx|LINE|L1	37654	NM_029693	76658	Mm.73235	NM_029693	ENSMUSG00000029526	1700123K08Rik	-	RIKEN cDNA 1700123K08 gene	protein-coding	7.334	6.661	2.099	5.949	4.049	1.373	6.134	6.713	3.608	5.627	4.562	2.415	5.812	6.968	6.707	6.416	5.258	6.683	3.198	1.821	2.272	2.994	nan	1.541	7.890
7862	chr19	53092368	53095186	+	0	NA	Intergenic	Intergenic	17525	NR_045320	78457	Mm.76932	NR_045320	ENSMUSG00000099988	1700054A03Rik	-	RIKEN cDNA 1700054A03 gene	ncRNA	5.051	4.347	1.290	5.283	3.357	2.023	2.938	2.306	3.701	5.623	1.501	1.112	2.895	4.794	3.952	5.641	4.880	4.702	0.469	0.728	0.685	0.685	0.655	0.209	7.630
15835	chrX	139155471	139156552	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-54033	NM_175541	245631	Mm.131001	NM_175541	ENSMUSG00000042515	Mum1l1	9430086K21Rik	melanoma associated antigen (mutated) 1-like 1	protein-coding	2.156	0.196	0.386	2.621	2.486	1.297	2.140	3.675	2.886	3.451	0.649	1.808	2.788	3.866	2.791	3.767	3.410	3.332	2.660	1.988	1.369	0.994	2.233	1.484	3.124
1630	chr10	94542493	94543879	+	0	NA	intron (NM_172051, intron 1 of 3)	intron (NM_172051, intron 1 of 3)	28329	NM_172051	319880	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	AW488095|C630016B22Rik|C88213|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	4.547	0.390	0.371	1.353	2.361	0.754	2.412	1.597	3.960	3.277	nan	0.920	3.196	3.609	2.819	2.803	3.984	3.872	nan	1.111	0.503	nan	0.393	0.443	3.103
11824	chr5	136931385	136933084	+	0	NA	intron (NR_015555, intron 3 of 3)	intron (NR_015555, intron 3 of 3)	13088	NR_015555	66752	Mm.135764	NR_015555	ENSMUSG00000097908	4933404O12Rik	AW494809	RIKEN cDNA 4933404O12 gene	ncRNA	3.102	1.140	0.642	2.112	1.873	1.215	1.557	2.493	2.695	2.971	1.245	1.360	2.022	3.014	2.677	1.752	2.096	3.094	1.077	1.125	0.801	0.899	nan	0.507	1.328
3109	chr11	120207815	120217262	+	0	NA	Intergenic	MTC-int|LTR|ERVL-MaLR	-20409	NM_001347621	268515	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	8.996	nan	3.615	12.459	6.915	5.577	nan	nan	7.585	nan	8.926	5.395	8.053	11.207	10.202	9.964	5.736	nan	5.133	nan	3.195	6.630	2.881	3.545	14.212
3185	chr12	13222975	13226451	+	0	NA	intron (NM_134040, intron 20 of 25)	intron (NM_134040, intron 20 of 25)	24461	NM_134040	104721	Mm.251255	NM_134040	ENSMUSG00000037149	Ddx1	AA409185|DBP-RB	DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	protein-coding	7.438	0.419	0.801	1.601	1.454	0.700	7.677	6.136	4.426	4.398	0.604	2.096	9.024	8.147	6.865	7.658	6.238	5.741	0.646	0.437	0.173	0.591	0.783	0.409	6.299
4340	chr13	101553628	101557171	+	0	NA	Intergenic	Intergenic	137231	NM_001024955	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	1.298	4.552	1.762	1.270	0.934	0.530	0.991	1.460	1.384	1.193	1.830	1.013	1.192	1.465	2.069	2.189	nan	nan	5.189	2.434	2.530	4.157	4.621	3.838	2.286
11345	chr5	73301558	73302661	+	0	NA	intron (NM_023429, intron 4 of 8)	intron (NM_023429, intron 4 of 8)	9315	NM_001159888	68095	Mm.247039	NM_023429	ENSMUSG00000029152	Ociad1	6030432N09Rik|AI481327|AW557942|Asrij|B230209J16Rik|BB021357|Emi2|Imi2|OCIA|TPA018	OCIA domain containing 1	protein-coding	1.584	0.433	0.348	1.861	1.209	0.363	0.886	1.911	2.012	2.160	2.309	0.836	1.116	3.159	2.051	3.093	2.112	2.975	0.442	0.328	0.333	0.799	0.316	0.019	1.711
11015	chr5	9130108	9132399	+	0	NA	intron (NM_011806, intron 9 of 17)	intron (NM_011806, intron 9 of 17)	30516	NM_001081029	652925	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	2.152	0.670	0.475	2.088	2.062	0.581	0.961	1.172	2.657	2.728	0.526	0.314	2.566	4.278	2.723	2.533	2.860	2.773	0.733	0.649	0.333	0.711	0.311	0.207	1.608
14102	chr8	27130728	27131647	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	-2555	NM_025686	66653	Mm.334467	NM_025686	ENSMUSG00000031487	Brf2	2700059M06Rik|5730512K07Rik|AU018504|AU022602|BRFU|TFIIIB50	BRF2, RNA polymerase III transcription initiation factor 50kDa subunit	protein-coding	0.389	nan	0.318	1.068	0.604	0.416	1.218	1.351	0.423	0.460	0.362	0.226	0.424	4.431	2.853	1.189	0.947	1.530	0.311	0.326	0.471	nan	0.573	0.107	0.905
14820	chr8	129326769	129333398	+	0	NA	Intergenic	Intergenic	66453	NR_144501	102635552		NM_001346808		Gm32856	-	predicted gene, 32856	protein-coding	11.621	5.316	2.032	9.557	6.357	2.757	5.306	11.050	8.135	10.450	6.043	3.186	7.255	12.024	9.563	11.134	7.719	8.855	nan	2.068	1.393	nan	2.220	nan	11.911
14157	chr8	37172212	37173527	+	0	NA	Intergenic	Intergenic	-148631	NR_126063	414128	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	2.294	0.935	0.684	1.213	2.471	1.876	4.145	4.023	2.654	3.279	1.166	0.629	6.163	3.661	4.120	4.993	4.179	3.447	0.755	0.720	0.931	0.546	1.529	1.147	2.848
5060	chr15	12236214	12238340	+	0	NA	intron (NM_172958, intron 5 of 15)	intron (NM_172958, intron 5 of 15)	32183	NM_172958	268783	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	3.963	1.016	0.733	1.143	0.979	0.135	4.804	9.956	2.435	1.886	4.632	5.421	3.389	3.403	2.780	2.962	2.782	2.139	6.942	5.111	2.308	7.109	8.226	5.852	1.659
3936	chr13	33030964	33032702	+	0	NA	intron (NM_011452, intron 2 of 6)	intron (NM_011452, intron 2 of 6)	4419	NM_011452	20706	Mm.45371	NM_011452	ENSMUSG00000021403	Serpinb9b	1600019A21Rik|R86|SPI-CI|Spi10|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9b	protein-coding	2.889	nan	1.057	3.032	5.228	1.887	nan	1.140	2.577	2.002	2.097	1.456	1.418	4.737	2.184	2.667	1.180	4.073	0.465	0.734		0.470	0.432	0.219	3.057
10376	chr4	108874082	108877780	+	0	NA	Intergenic	Intergenic	-3139	NM_023537	69908	Mm.41580	NM_023537	ENSMUSG00000003411	Rab3b	2610528C18Rik	RAB3B, member RAS oncogene family	protein-coding	7.192	3.209	1.393	5.224	6.365	4.377	7.623	6.431	4.180	4.620	3.259	2.368	4.206	7.231	5.758	6.950	5.324	5.720	3.529	3.858	4.327	4.049	3.405	2.971	6.673
350	chr1	79755170	79759115	+	0	NA	intron (NM_027057, intron 1 of 4)	MER5A|DNA|hAT-Charlie	4627	NM_001111279	69368	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	11.201	4.331	1.721	5.616	5.879	2.539	9.444	7.216	4.755	7.324	2.819	2.425	9.037	10.178	7.045	9.403	7.178	7.891	2.899	nan	1.651	2.835	nan	2.164	10.336
6541	chr17	32028953	32044220	+	0	NA	exon (NM_028244, exon 1 of 16)	exon (NM_028244, exon 1 of 16)	424	NM_028244	72462	Mm.102761	NM_028244	ENSMUSG00000058392	Rrp1b	2600005C20Rik|D030064A17|Kiaa0179|mKIAA0179	ribosomal RNA processing 1 homolog B (S. cerevisiae)	protein-coding	4.763	1.801	0.936	6.872	6.194	4.227	5.906	3.907	4.921	7.011	5.687	3.096	4.658	7.145	4.105	nan	4.062	6.304	0.768	1.185	1.282	1.357	1.372	1.103	5.530
9234	chr3	37211122	37212940	+	0	NA	Intergenic	Intergenic	20605	NM_001291041	60505	Mm.157689	NM_021782	ENSMUSG00000027718	Il21	IL-21	interleukin 21	protein-coding	6.795	11.241	5.357	6.701	4.339	3.085	8.101	5.509	4.530	7.599	4.755	3.490	6.801	8.385	6.913	6.507	5.566	5.976	4.751	2.350	2.032	5.667	3.457	4.444	7.110
11647	chr5	120118749	120126466	+	0	NA	non-coding (NR_045793, exon 3 of 3)	non-coding (NR_045793, exon 3 of 3)	6094	NM_028762	74111	Mm.41022	NM_028762	ENSMUSG00000029594	Rbm19	1200009A02Rik|AV302714|NPO	RNA binding motif protein 19	protein-coding	3.615	1.226	0.436	7.361	1.626	0.967	1.481	1.031	2.407	2.906	0.967	0.979	0.923	1.771	1.631	2.465	1.548	4.323	nan	nan	1.811	6.207	nan	0.699	2.824
11051	chr5	20837144	20839287	+	0	NA	intron (NM_172992, intron 2 of 17)	RMER6A|LTR|ERVK	43909	NM_172992	68770	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	5.769	1.369	0.567	1.858	0.719	0.234	2.914	4.922	3.297	2.650	2.821	0.932	4.710	4.976	4.117	4.825	2.251	3.304	3.926	2.139	0.909	9.701	2.084	1.041	2.090
9834	chr3	137624149	137627780	+	0	NA	intron (NM_030143, intron 2 of 2)	intron (NM_030143, intron 2 of 2)	2292	NM_030143	73284	Mm.250841	NM_030143	ENSMUSG00000046818	Ddit4l	1700037B15Rik|1700108M02Rik|REDD2|RTP801L|Smhs1	DNA-damage-inducible transcript 4-like	protein-coding	3.874	nan	0.974	2.218	2.136	1.053	6.974	4.828	3.773	3.365	2.117	2.112	7.785	6.557	5.732	5.377	5.714	6.222	2.230	1.302	0.629	2.086	1.252	0.669	4.829
12007	chr5	151905682	151908327	+	0	NA	Intergenic	Intergenic	-255796	NM_027009	69263	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	6.004	2.144	1.283	4.636	4.528	3.107	5.451	5.058	6.558	8.486	2.034	0.934	7.286	8.015	6.968	7.802	5.036	8.401	2.893	0.889	0.982	1.081	1.703	1.383	5.103
1810	chr10	120941858	120959658	+	0	NA	intron (NM_001081193, intron 2 of 12)	intron (NM_001081193, intron 2 of 12)	28572	NM_001081193	380664	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding	6.535	3.462	2.229	4.222	5.093	4.393	6.669	7.034	5.079	4.881	1.854	2.410	6.085	6.355	6.902	7.183	6.669	nan	1.733	1.462	1.901	1.882	2.023	2.095	7.144
6233	chr16	93727791	93730677	+	0	NA	intron (NM_027293, intron 2 of 36)	intron (NM_027293, intron 2 of 36)	17327	NM_027293	70028	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	5.250	1.057	0.361	6.414	3.761	1.731	5.273	7.314	4.670	5.690	0.677	1.441	7.120	8.795	7.667	11.286	5.903	7.731	2.548	1.483	1.493	3.109	1.084	0.929	10.869
11351	chr5	73953233	73959660	+	0	NA	Intergenic	FordPrefect|DNA|hAT-Tip100	111965	NM_177561	69727	Mm.48795	NM_177561	ENSMUSG00000054814	Usp46	1190009E20Rik|2410018I08Rik|AI451644	ubiquitin specific peptidase 46	protein-coding	0.553	0.631	0.489	0.681	0.401	0.116	0.761	1.082	2.131	1.153	7.162	4.901	0.641	0.944	1.164	nan	0.495	nan	0.742	0.502	0.191	1.188	0.737	0.332	0.663
2754	chr11	98789030	98808001	+	0	NA	non-coding (NR_033551, exon 3 of 3)	non-coding (NR_033551, exon 3 of 3)	2746	NM_028722	74026	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male-specific lethal 1 homolog (Drosophila)	protein-coding	6.949	nan	2.042	7.821	4.772	2.875	5.462	7.072	3.579	5.432	4.481	2.894	4.302	6.820	5.793	6.072	nan	5.528	2.454	nan	2.408	3.279	nan	nan	7.676
15666	chrX	7708954	7710279	+	0	NA	3' UTR (NM_173747, exon 11 of 11)	3' UTR (NM_173747, exon 11 of 11)	12482	NM_173747	209416	Mm.148753	NM_173747	ENSMUSG00000031148	Gpkow	4432411B18|DXErtd697e|DXImx41e|T54	G patch domain and KOW motifs	protein-coding	8.178	8.759	2.581	6.352	4.206	2.244	5.599	5.802	3.814	7.448	6.636	1.943	6.345	7.628	5.864	6.432	5.250	5.657	4.124	3.907	1.976	4.211	4.598	2.494	8.829
10633	chr4	132566986	132570060	+	0	NA	intron (NM_001081211, intron 1 of 1)	B4|SINE|B4	4456	NM_001081211	19204	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	6.730	7.029	2.623	8.282	4.989	3.353	7.780	7.515	3.502	10.159	7.213	3.302	4.804	8.302	6.754	8.150	4.847	6.194	7.008	4.695	7.397	9.615	5.559	7.406	14.557
1546	chr10	83992639	83997466	+	0	NA	Intergenic	Intergenic	272187	NM_001145198	69784	Mm.271188	NM_001145198	ENSMUSG00000087651	1500009L16Rik	2700050C19Rik|OCC-1	RIKEN cDNA 1500009L16 gene	protein-coding	5.753	2.915	0.737	6.280	4.331	2.408	5.883	5.958	3.310	7.235	6.365	3.014	5.241	5.793	6.680	7.811	4.822	6.705	5.805	2.226	2.029	4.374	nan	3.752	10.964
7627	chr19	21218367	21222185	+	0	NA	Intergenic	L1Md_T|LINE|L1	-52002	NM_009551	22682	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	2.087	1.247	0.528	1.883	1.846	1.059	3.527	7.107	2.822	2.105	3.932	2.490	2.289	2.817	3.559	3.082	3.599	nan	1.018	0.716	0.353	1.586	1.062	0.999	1.916
311	chr1	74670502	74671862	+	0	NA	intron (NM_001014974, intron 1 of 19)	intron (NM_001014974, intron 1 of 19)	9428	NM_001014974	67534	Mm.260714	NM_001014974	ENSMUSG00000033257	Ttll4	4632407P03Rik|AI451681|mKIAA0173	tubulin tyrosine ligase-like family, member 4	protein-coding	2.946	0.361	0.666	2.037	3.151	2.181	1.855	1.126	2.800	3.221	0.569	0.397	2.802	3.781	1.968	4.296	2.951	3.470	nan	nan	0.843	0.634	nan	0.738	1.919
3256	chr12	30210492	30213625	+	0	NA	intron (NR_136915, intron 14 of 16)	intron (NR_136915, intron 14 of 16)	-79434	NM_009417	22018	Mm.4991	NM_009417	ENSMUSG00000020673	Tpo	-	thyroid peroxidase	protein-coding	0.309	0.987	1.032	0.219	0.146	0.127	0.151	0.207	0.166	0.211	0.158	0.159	0.105	0.157	0.134	0.312	0.417	0.278	6.257	3.601	2.711	4.837	3.340	2.350	0.434
12439	chr6	90412217	90416932	+	0	NA	intron (NM_173775, intron 5 of 16)	intron (NM_173775, intron 5 of 16)	13906	NM_173775	243538	Mm.386876	NM_173775	ENSMUSG00000048794	Cfap100	AW048498|C030041G11Rik|C230069K22Rik|Ccdc37	cilia and flagella associated protein 100	protein-coding	3.240	1.942	0.354	7.754	1.542	0.840	2.253	7.149	3.963	6.687	1.603	1.029	3.306	4.682	3.555	8.154	2.710	4.939	nan	0.453	0.379	2.726	0.567	0.548	4.597
4537	chr14	25396167	25399690	+	0	NA	Intergenic	Intergenic	-61257	NM_001310666	328365	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|ENSMUSG00000072684|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.389	0.620	0.400	0.587	0.162		0.294	0.515	0.259	0.279	0.256	0.202	0.094	0.295	0.193	nan	nan	nan	4.882	4.009	3.084	6.040	4.470	3.055	0.518
9208	chr3	30003304	30007604	+	0	NA	intron (NM_007963, intron 2 of 14)	intron (NM_007963, intron 2 of 14)	7750	NM_007963	14013	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	4.425	0.628	0.547	4.570	2.875	1.655	nan	0.884	5.952	6.697	2.672	4.597	6.877	3.983	nan	5.772	5.171	5.306	0.661	0.498	0.513	0.736	0.549	0.759	3.897
8850	chr2	154925635	154929588	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-34705	NM_026030	67204	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	nan	1.175	0.757	0.779	1.257	0.692	4.213	6.057	nan	nan	0.759	0.498	4.061	nan	2.220	3.020	3.816	nan	nan	0.721	0.703	0.588	0.616	0.428	nan
825	chr1	166178014	166180504	+	0	NA	Intergenic	MMERVK10C-int|LTR|ERVK	48799	NM_021610	59290	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197	glycoprotein A33 (transmembrane)	protein-coding	8.593	7.005	2.828	nan	2.123	0.784	2.489	5.156	nan	5.633	4.687	3.107	nan	5.148	nan	10.428	4.831	6.658	4.699	1.952	1.538	nan	nan	1.874	8.973
917	chr1	179572469	179575813	+	0	NA	intron (NM_146105, intron 1 of 10)	intron (NM_146105, intron 1 of 10)	27612	NM_146105	226744	Mm.87662	NM_146105	ENSMUSG00000038949	Cnst	9630058J23Rik	consortin, connexin sorting protein	protein-coding	6.471	1.575	0.641	2.927	4.979	2.779	5.864	4.490	5.336	6.150	6.147	3.021	4.477	7.565	6.394	7.677	4.107	6.329	2.175	1.386	1.301	2.924	1.950	1.148	6.070
3431	chr12	74995986	74997486	+	0	NA	intron (NM_172805, intron 8 of 10)	intron (NM_172805, intron 8 of 10)	180596	NM_172805	238271	Mm.44465	NM_172805	ENSMUSG00000034402	Kcnh5	Eag2	potassium voltage-gated channel, subfamily H (eag-related), member 5	protein-coding	6.029	1.557	1.599	1.168	1.814	1.257	3.108	6.424	1.619	1.499	2.944	2.169	3.561	3.879	3.490	3.908	4.833	2.850	0.954	1.194	0.931	1.160	0.939	0.912	2.180
6003	chr16	32517551	32519154	+	0	NA	Intergenic	Intergenic	22071	NM_199309	245308	Mm.76859	NM_199309	ENSMUSG00000052363	Zdhhc19	Gm1744|Gm616	zinc finger, DHHC domain containing 19	protein-coding	2.129	0.803	0.748	1.257	1.457	1.123	1.757	3.526	1.290	1.666	0.798	0.511	nan	2.834	2.556	nan	2.485	1.585	1.857	0.674	1.010	1.147	nan	1.824	3.438
495	chr1	108136636	108138617	+	0	NA	Intergenic	IAPEz-int|LTR|ERVK	220367	NR_102307	319596	Mm.136054	NR_102306	ENSMUSG00000100457	D830032E09Rik	-	RIKEN cDNA D830032E09 gene	ncRNA	5.406	nan	0.624	2.871	1.898	0.656	4.306	3.066	2.697	2.821	3.397	2.263	4.462	3.967	3.929	5.619	4.857	4.766	0.964	0.455	0.184	1.128	0.739	0.062	3.615
4977	chr14	121604370	121611471	+	0	NA	intron (NM_001347596, intron 30 of 52)	intron (NM_001347596, intron 30 of 52)	90497	NM_001347596	105445	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	1.248	0.674	0.329	1.779	0.445	0.209	0.720	1.285	1.447	1.392	0.608	0.807	0.582	1.119	nan	1.608	0.713	1.903	3.976	1.795	1.345	7.095	2.589	2.056	1.462
4501	chr14	21164315	21168246	+	0	NA	intron (NM_001243041, intron 3 of 10)	B1_Mur1|SINE|Alu	90128	NM_001243041	11534	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	5.236	5.909	1.735	5.989	2.736	1.056	4.022	6.905	4.932	5.747	4.959	3.474	4.343	6.048	7.092	7.409	3.222	6.830	5.015	1.761	1.297	6.529	2.410	1.607	8.482
14736	chr8	125199748	125205716	+	0	NA	intron (NM_174854, intron 9 of 12)	intron (NM_174854, intron 9 of 12)	148537	NM_174854	244667	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	2.704	nan	0.709	nan	1.040	0.357	nan	nan	1.995	3.542	0.808	0.618	1.084	1.434	nan	3.195	1.391	nan	nan	3.048	3.638	nan	4.415	4.959	nan
9176	chr3	23451649	23452804	+	0	NA	Intergenic	Intergenic	1200856	NR_004439	19784		NR_004439		Rprl2	RPRH3|Rmrp3	ribonuclease P RNA-like 2	ncRNA	4.701	0.438	0.447	2.651	7.019	6.769	5.972	1.201	nan	4.511	0.981	1.061	1.971	3.747	nan	1.487	5.103	4.827	0.683	3.071	1.638	0.461	2.300	2.787	0.656
3302	chr12	40946295	40950664	+	0	NA	Intergenic	B1_Mur4|SINE|Alu	-75611	NM_053122	93757	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	10.810	7.136	2.093	11.115	5.470	2.666	5.974	7.360	6.872	9.426	5.242	3.319	9.567	10.667	10.265	11.866	8.414	10.978	nan	1.689	2.083	4.913	2.001	1.949	12.252
12428	chr6	89371167	89375837	+	0	NA	Intergenic	B2_Mm1t|SINE|B2	-10889	NM_008881	18844	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	7.194	2.613	1.000	5.415	5.607	2.070	4.878	5.435	5.748	6.372	5.947	2.373	6.995	9.884	7.233	10.117	4.632	9.258	nan	1.050	0.432	0.990	0.985	0.563	7.088
8048	chr2	27179122	27185670	+	0	NA	intron (NM_138942, intron 11 of 11)	intron (NM_138942, intron 11 of 11)	16889	NM_138942	13166	Mm.167781	NM_138942	ENSMUSG00000000889	Dbh	-	dopamine beta hydroxylase	protein-coding	6.673	5.355	2.177	4.275	2.218	1.019	3.800	5.279	2.930	3.466	2.169	1.288	3.648	3.584	3.204	4.285	3.401	4.305	1.388	0.926	0.734	2.087	0.752	0.574	8.466
9126	chr2	181396196	181398163	+	0	NA	intron (NM_027656, intron 2 of 3)	intron (NM_027656, intron 2 of 3)	12929	NR_045164	329584	Mm.386906	NR_045164	ENSMUSG00000085028	Slc2a4rg-ps	C430010C01|Gm14462|OTTMUSG00000016710	Slc2a4 regulator, pseudogene	pseudo	3.294	1.266	0.389	3.965	0.814	0.522	1.454	1.157	1.504	1.981	0.650	0.787	1.291	1.527	1.718	nan	1.270	3.003	0.888	0.630	0.374	1.018	0.442	0.291	3.186
1816	chr10	121749854	121751408	+	0	NA	exon (NM_173022, exon 3 of 3)	exon (NM_173022, exon 3 of 3)	10694	NM_173022	270802	Mm.209172	NM_173022	ENSMUSG00000053684	BC048403	E030027L10	cDNA sequence BC048403	protein-coding	2.589	0.243	0.251	0.743	1.400	0.550	1.798	2.095	1.398	1.764	0.453	0.190	2.936	4.910	3.059	3.252	3.189	1.732	0.367	0.363	0.226	0.521	0.296	0.131	2.012
9399	chr3	84406298	84408925	+	0	NA	Intergenic	Intergenic	-27690	NR_040752	75309	Mm.159497	NR_040752	ENSMUSG00000104004	4930565D16Rik	-	RIKEN cDNA 4930565D16 gene	ncRNA	1.653	0.446	0.301	0.787	1.725	0.991	3.324	4.619	1.026	1.140	7.167	3.571	1.938	2.946	2.124	nan	2.925	1.476	nan	0.436	0.235	0.454	1.168	0.658	1.093
2460	chr11	74966034	74967856	+	0	NA	intron (NM_001002764, intron 8 of 18)	B3A|SINE|B2	41073	NM_001002764	103677	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	6.299	7.058	2.309	7.071	2.958	2.249	2.508	3.392	3.979	4.818	4.889	1.711	2.605	4.301	3.601	4.042	2.324	4.653	1.460	1.905	nan	1.719	0.916	0.493	4.700
5174	chr15	54576205	54582659	+	0	NA	intron (NM_178920, intron 1 of 3)	intron (NM_178920, intron 1 of 3)	8066	NM_178920	105853	Mm.410994	NM_178920	ENSMUSG00000024479	Mal2	AI461653	mal, T cell differentiation protein 2	protein-coding	1.263	0.485	0.438	nan	0.592	0.242	nan	nan	nan	nan	0.329	0.389	0.356	0.784	0.474	nan	0.699	0.505	9.233	6.781	5.410	7.041	10.607	8.688	0.675
4293	chr13	95990840	95993962	+	0	NA	intron (NM_029210, intron 4 of 12)	MLT1D|LTR|ERVL-MaLR	-100479	NM_027711	544963	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	3.384	0.393	0.334	3.679	2.673	1.654	4.549	4.106	3.501	8.437	0.317	0.448	4.474	6.285	4.669	6.123	2.976	5.683	4.736	2.142	2.607	3.344	3.785	4.651	9.807
12802	chr6	136466599	136469227	+	0	NA	Intergenic	Intergenic	-50938	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	6.270	7.161	3.833	5.668	2.902	1.411	5.009	5.041	5.556	5.448	4.320	3.194	6.355	7.813	6.156	6.964	7.322	6.656	3.495	2.017	1.475	2.987	1.615	1.665	6.136
15085	chr9	53183567	53186487	+	0	NA	intron (NM_029936, intron 13 of 17)	Lx10|LINE|L1	63085	NM_029936	77591	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	5.297	1.139	0.530	2.632	1.668	0.299	4.035	6.474	3.392	3.730	2.383	2.174	6.309	6.699	5.724	7.632	3.807	5.363	2.225	1.998	0.849	2.477	1.315	0.817	7.965
11667	chr5	122592880	122598297	+	0	NA	intron (NM_009879, intron 8 of 18)	intron (NM_009879, intron 8 of 18)	18930	NM_009879	12589	Mm.10125	NM_009879	ENSMUSG00000029469	Ift81	AW060663|Cdv-1|Cdv-1r|Cdv1	intraflagellar transport 81	protein-coding	5.661	3.518	2.210	5.343	5.705	5.299	1.799	2.553	3.291	4.061	4.244	2.725	2.092	3.222	2.238	3.249	2.832	3.087	nan	nan	2.149	1.209	nan	1.108	3.658
5067	chr15	25300402	25316587	+	0	NA	Intergenic	L1_Mus4|LINE|L1	105270	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	1.487	7.579	4.258	0.520	0.373	0.235	1.121	1.495	1.099	0.885	0.523	1.741	1.594	0.664	0.910	0.633	1.005	0.962	1.699	0.924	0.642	2.029	0.839	0.389	0.870
2976	chr11	115227242	115229362	+	0	NA	intron (NM_001033393, intron 8 of 9)	intron (NM_001033393, intron 8 of 9)	38941	NM_010350	14813	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	3.524	4.360	1.060	5.633	2.780	1.649	6.963	7.594	3.636	3.790	0.778	2.128	5.162	6.101	6.398	7.578	4.642	4.595	5.928	nan	3.567	6.429	7.166	6.909	6.255
3574	chr12	86729119	86740658	+	0	NA	intron (NM_001195767, intron 1 of 14)	intron (NM_001195767, intron 1 of 14)	519	NM_001195767	627607	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	11.093	1.304	0.730	5.990	8.062	5.846	6.749	9.515	7.232	7.188	2.640	3.984	9.740	10.747	8.090	nan	11.153	8.064	0.925	1.298	1.247	0.854	0.863	0.786	nan
3824	chr13	5766236	5769874	+	0	NA	Intergenic	Intergenic	90037	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	4.725	1.029	1.008	3.623	6.782	3.066	3.691	3.196	3.803	4.241	2.758	3.016	3.420	5.479	4.165	4.940	2.409	5.643	0.820	1.286	0.648	0.765	0.770	0.343	3.336
10526	chr4	125932304	125935299	+	0	NA	Intergenic	Intergenic	-11491	NR_015560	72395	Mm.112888	NR_015560	ENSMUSG00000085562	2610028E06Rik	BB043107	RIKEN cDNA 2610028E06 gene	ncRNA	10.234	12.815	2.580	14.185	5.513	3.269	6.960	6.436	5.347	11.650	6.755	2.995	6.517	9.821	nan	9.248	4.674	9.430	6.039	3.351	3.950	7.631	4.494	6.117	16.864
15388	chr9	94433829	94435134	+	0	NA	Intergenic	RMER19B2|LTR|ERVK	103600	NM_001033145	68861	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	1.586	1.481	0.743	3.407	0.608	0.285	0.499	0.684	1.267	1.089	0.814	0.767	0.511	0.624	1.011	1.870	1.332	2.509	1.214	1.051	0.371	1.979	1.224	0.895	0.883
13253	chr7	72538475	72540378	+	0	NA	Intergenic	Intergenic	-232831	NM_001024703	244049	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	5.457	0.765	0.608	5.363	3.802	1.774	5.579	6.009	3.692	4.199	1.615	1.751	3.318	5.336	3.988	3.332	3.181	5.653	0.870	1.826	1.234	1.404	2.796	1.591	4.284
3238	chr12	25862888	25867763	+	0	NA	Intergenic	Intergenic	345180	NR_131149	629481	Mm.390460	NR_131149		Gm29687	-	predicted gene, 29687	ncRNA	4.411	1.721	1.018	2.214	1.791	0.783	4.973	4.621	3.962	3.167	3.442	3.764	4.784	4.611	6.665	7.431	4.184	4.223	1.288	1.020	0.667	1.786	0.552	0.263	6.905
3421	chr12	73770950	73776707	+	0	NA	intron (NM_001313977, intron 13 of 14)	intron (NM_001313977, intron 13 of 14)	-127496	NM_001313920	15251	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	4.244	0.628	0.558	1.639	2.128	1.177	2.474	2.722	1.669	2.185	0.951	0.558	3.107	7.119	2.241	2.594	2.753	2.066	3.622	1.370	0.928	1.384	4.096	3.234	4.332
5531	chr15	85482842	85524860	+	0	NA	promoter-TSS (NM_001256072)	promoter-TSS (NM_001256072)	-624	NM_001256072	328577	Mm.212960	NM_001256072	ENSMUSG00000096607	7530416G11Rik	-	RIKEN cDNA 7530416G11 gene	protein-coding	7.526	2.451	0.813	nan	4.527	2.508	nan	nan	nan	7.420	7.522	4.670	8.624	9.211	nan	nan	nan	nan	nan	4.069	3.227	nan	6.154	5.011	nan
2274	chr11	60120661	60126365	+	0	NA	intron (NM_009021, intron 1 of 5)	intron (NM_009021, intron 1 of 5)	-16569	NM_001037764	19377	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	4.855	0.823	0.406	3.004	2.016	1.487	5.576	4.486	4.342	3.884	2.065	1.741	7.089	4.938	8.046	7.846	5.117	5.896	nan	1.737	1.608	3.612	2.357	1.596	nan
8173	chr2	34756631	34760427	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-3297	NM_025709	66691	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	5.181	1.759	0.797	3.130	1.128	0.595	3.768	3.977	3.541	3.940	1.541	1.061	5.836	5.715	4.364	9.279	6.078	6.039	1.051	1.254	0.557	2.200	1.165	0.482	12.068
14169	chr8	37775425	37777873	+	0	NA	intron (NM_145841, intron 2 of 7)	intron (NM_145841, intron 2 of 7)	475553	NR_029884	723860		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA	5.138	0.444	0.801	3.564	3.038	0.977	3.722	3.325	4.269	4.964	2.030	0.697	6.978	5.906	3.571	4.892	4.927	4.854	0.405	1.217	0.306	0.387	0.599	0.384	2.874
5938	chr16	24494303	24496402	+	0	NA	intron (NM_001145952, intron 2 of 11)	intron (NM_001145952, intron 2 of 11)	-33962	NR_038091	624582	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	4.356	3.835	1.808	4.833	4.355	2.365	3.390	6.163	3.772	3.808	4.036	1.609	4.009	5.405	4.502	4.972	2.206	6.601	1.327	1.844	0.973	1.200	nan	0.633	6.015
2002	chr11	20011612	20014322	+	0	NA	intron (NM_033523, intron 4 of 5)	RSINE1|SINE|B4	88525	NM_033523	114716	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	nan	12.564	6.316	8.465	9.386	7.238	8.351	6.359	4.553	9.208	6.062	2.676	8.244	10.943	5.359	7.639	5.478	nan	5.214	3.661	5.138	5.450	4.005	5.713	8.156
4591	chr14	32773520	32777795	+	0	NA	Intergenic	Intergenic	-10306	NM_001163616	69069	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	4.005	1.235	0.702	4.039	2.750	1.177	3.464	5.263	3.025	3.376	1.685	1.741	2.477	4.104	2.676	2.885	nan	2.857	2.727	1.612	1.029	3.246	1.996	0.943	2.514
5508	chr15	83380306	83382638	+	0	NA	intron (NM_011862, intron 8 of 10)	intron (NM_011862, intron 8 of 10)	-14175	NR_027980	69291	Mm.66794	NM_001033147		1700001L05Rik	-	RIKEN cDNA 1700001L05 gene	ncRNA	4.156	0.826	0.529	nan	1.687	1.324	7.522	6.310	nan	2.638	1.044	0.812	6.564	4.139	3.412	5.290	5.567	nan	nan	0.762	0.876	nan	0.832	0.661	2.742
14208	chr8	47581221	47583496	+	0	NA	Intergenic	RLTR20B5_MM|LTR|ERVK	48713	NM_203507	192174	Mm.273081	NM_203507	ENSMUSG00000031568	Rwdd4a	BC016198|Gm1942|Rwdd4	RWD domain containing 4A	protein-coding	3.557	2.166	0.927	1.898	0.706	0.327	1.897	4.677	1.951	1.985	5.371	1.911	1.744	1.997	2.638	2.974	1.564	2.380	1.645	0.836	0.431	1.008	0.718	0.309	2.787
5873	chr16	20476518	20480311	+	0	NA	Intergenic	Intergenic	-20403	NM_172265	224045	Mm.233855	NM_172265	ENSMUSG00000003235	Eif2b5	C81315	eukaryotic translation initiation factor 2B, subunit 5 epsilon	protein-coding	7.616	0.419	0.278	1.749	2.819	1.600	5.278	3.291	2.312	2.799	1.282	0.775	4.433	5.697	3.027	3.674	2.683	4.853	0.545	0.487	0.362	0.334	0.250	0.355	4.335
1068	chr1	196831860	196833444	+	0	NA	Intergenic	Intergenic	-1655937	NM_007758	12902	Mm.235387	NM_007758	ENSMUSG00000026616	Cr2	C3DR|CD21|CD35|Cr-1|Cr-2|Cr1	complement receptor 2	protein-coding	2.560	1.328	0.495	3.826	1.459	0.664	0.789	1.694	2.676	1.987	1.094	1.051	1.419	1.698	1.656	2.173	1.494	3.327	0.928	0.650	0.424	0.871	nan	0.348	1.408
2088	chr11	35757781	35774013	+	0	NA	Intergenic	Intergenic	-3598	NM_145962	211347	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	5.437	0.497	0.433	4.135	5.193	3.218	6.403	6.134	4.010	5.026	3.067	1.842	5.993	8.161	5.679	nan	3.873	nan	0.997	1.009	0.801	0.984	1.514	1.155	5.582
14529	chr8	108016757	108021553	+	0	NA	Intergenic	Intergenic	-430673	NM_010817	17463	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	10.057	1.919	0.643	8.740	7.538	4.241	6.829	9.594	5.719	9.702	3.080	2.306	11.848	12.272	9.308	11.767	13.013	8.439	5.169	6.119	5.018	9.021	7.021	5.586	12.076
12655	chr6	119428739	119430281	+	0	NA	Intergenic	Intergenic	-12027	NM_197985	68465	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	11.177	17.631	4.507	13.415	4.143	3.907	11.362	9.361	5.785	24.318	8.701	3.907	9.136	12.243	12.791	16.029	9.342	12.241	5.604	3.888	4.704	7.775	5.963	7.042	20.671
8344	chr2	71818302	71828429	+	0	NA	intron (NM_001277970, intron 5 of 24)	intron (NM_001277970, intron 5 of 24)	36426	NM_001277970	16403	Mm.225096	NM_008397	ENSMUSG00000027111	Itga6	5033401O05Rik|AI115430|Cd49f|VLA-6	integrin alpha 6	protein-coding	0.417	0.709	0.486	0.603	0.226	0.082	0.294	0.395	0.264	0.282	0.168	0.149	0.186	0.294	0.400	0.613	0.521	0.531	5.661	3.387	2.553	7.266	4.063	3.230	0.662
9617	chr3	101742002	101744863	+	0	NA	Intergenic	L1M1|LINE|L1	92791	NM_172295	242125	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	4.549	0.799	0.401	3.122	3.060	2.319	6.047	7.010	4.223	4.453	6.128	4.017	6.445	8.148	4.149	5.242	6.423	4.742	4.084	2.552	1.837	3.176	4.019	3.328	4.434
486	chr1	106664214	106668971	+	0	NA	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	47698	NM_009741	12043	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0.299	nan	0.174	0.238	0.058		0.190	0.205	0.137	0.233	0.262	0.181	0.128	0.137	0.182	0.669	0.386	0.377	4.993	4.488	1.787	7.303	6.295	4.759	0.370
2134	chr11	48714996	48716123	+	0	NA	Intergenic	Intergenic	-84801	NM_008143	14694	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	7.192	7.055	4.592	4.842	4.606	1.923	2.331	3.653	2.793	2.992	3.375	2.515	2.632	3.314	2.985	2.752	3.407	4.022	2.647	2.773	1.535	nan	2.643	1.261	4.079
4213	chr13	63196951	63200083	+	0	NA	intron (NM_001289926, intron 9 of 15)	intron (NM_001289926, intron 9 of 15)	-41512	NR_110520	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	3.565	2.277	1.454	4.237	2.520	1.027	1.630	1.773	2.505	2.570	1.455	1.172	1.756	2.178	2.270	nan	1.321	3.405	4.316	3.352	1.700	4.679	4.235	2.382	2.721
9440	chr3	88267658	88271195	+	0	NA	Intergenic	B3|SINE|B2	-14742	NM_021375	58176	Mm.103777	NM_021375	ENSMUSG00000103766	Rhbg	-	Rhesus blood group-associated B glycoprotein	protein-coding	4.058	1.402	1.062	2.953	4.099	2.956	4.803	3.990	4.471	4.649	2.825	1.909	6.246	7.580	4.256	nan	4.083	5.030	nan	0.974	1.209	0.769	1.175	1.159	5.806
3239	chr12	25873692	25876039	+	0	NA	Intergenic	B3|SINE|B2	335640	NR_131149	629481	Mm.390460	NR_131149		Gm29687	-	predicted gene, 29687	ncRNA	6.036	16.030	4.604	4.394	0.927	0.323	3.903	5.422	3.206	3.001	4.964	3.164	4.396	4.002	4.884	6.146	2.720	4.663	2.087	1.554	0.974	3.476	0.381	0.284	5.741
10380	chr4	109631368	109638265	+	0	NA	Intergenic	L1_Mus1|LINE|L1	30556	NM_007671	12580	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)	protein-coding	0.396	0.690	0.410	0.378	0.212	0.196	0.297	nan	0.413	0.431	0.244	0.305	0.145	0.258	0.330	0.525	0.376	nan	3.649	3.342	2.226	5.407	2.366	1.912	0.422
13104	chr7	31545233	31546242	+	0	NA	Intergenic	Intergenic	160017	NM_001198871	100043836	Mm.296883	NM_001198871	ENSMUSG00000094053	Scgb2b7	Abpbg7|Gm4684	secretoglobin, family 2B, member 7	protein-coding	4.183	1.344	0.744	1.835	1.701	0.483	4.200	4.930	1.848	2.983	3.156	1.838	2.498	4.513	2.798	3.694	4.444	3.252	1.001	1.498	0.550	0.509	1.693	0.506	4.425
5309	chr15	73445837	73449756	+	0	NA	Intergenic	Lx4B|LINE|L1	-24605	NM_001130409	14083	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FAK|FRNK|Fadk|mKIAA4203|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	6.623	3.380	1.833	4.622	2.826	1.225	7.854	9.265	4.024	4.493	7.179	3.448	8.276	6.987	7.163	6.980	6.363	5.980	2.763	1.375	0.914	nan	2.157	0.948	7.408
10611	chr4	131825139	131827124	+	0	NA	intron (NM_001083119, intron 1 of 30)	intron (NM_001083119, intron 1 of 30)	12147	NM_011214	19273	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding	5.937	6.530	3.458	6.939	7.731	7.148	5.515	5.523	6.894	6.243	4.304	2.990	5.226	8.220	6.441	6.819	5.631	6.578	5.733	3.452	5.184	5.915	4.963	5.646	5.163
2045	chr11	29447187	29448863	+	0	NA	exon (NM_176841, exon 8 of 32)	exon (NM_176841, exon 8 of 32)	67008	NM_026465	67939	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	11.310	16.091	4.549	10.113	3.255	1.419	7.189	7.238	7.022	8.421	8.224	4.857	8.824	8.969	9.714	10.834	7.423	9.880	6.065	4.060	2.195	7.508	4.148	2.136	10.786
686	chr1	137714833	137717886	+	0	NA	Intergenic	L1Md_A|LINE|L1	-250096	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	4.263	1.179	0.322	nan	1.693	0.846	6.941	7.227	2.872	4.227	8.276	3.409	6.814	6.085	6.921	11.732	4.634	5.487	1.608	0.604	0.920	2.265	0.824	0.540	nan
3149	chr12	3360297	3362845	+	0	NA	Intergenic	Intergenic	-3561	NM_008445	16570	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	3.423	3.856	3.643	1.125	0.944	0.718	5.076	3.021	2.752	2.163	0.562	0.825	3.833	3.403	3.635	4.426	6.336	2.836	0.644	0.681	0.739	0.368	0.703	0.607	4.466
5310	chr15	73466196	73469304	+	0	NA	Intergenic	MLTR73|LTR|ERV1	-44559	NM_001130409	14083	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FAK|FRNK|Fadk|mKIAA4203|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	nan	nan	1.029	nan	1.760	0.949	6.048	7.308	3.207	nan	nan	1.614	6.429	nan	4.655	4.866	nan	5.128	2.138	1.024	0.511	nan	1.557	1.065	5.838
12469	chr6	91928443	91930732	+	0	NA	intron (NM_198668, intron 12 of 19)	intron (NM_198668, intron 12 of 19)	25354	NM_198668	381798	Mm.444785	NM_198668	ENSMUSG00000034063	4930590J08Rik	Gm1071	RIKEN cDNA 4930590J08 gene	protein-coding	4.532	1.576	0.726	6.403	1.715	0.732	1.658	1.117	2.292	4.015	0.941	0.778	1.223	2.119	2.062	3.201	1.656	4.077	nan	1.147	0.857	0.956	0.803	0.416	3.862
8735	chr2	143828019	143837536	+	0	NA	intron (NM_009751, intron 5 of 7)	(CA)n|Simple_repeat|Simple_repeat	30396	NM_009751	12075	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	5.476	4.466	1.461	5.025	2.230	1.387	5.252	6.679	3.984	7.841	2.929	1.961	5.725	4.884	5.404	7.037	4.863	5.594	nan	1.009	1.251	2.102	1.121	1.404	8.835
14694	chr8	122977589	122985356	+	0	NA	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	60812	NR_037865	77087	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	4.396	0.858	0.544	3.053	2.858	1.640	5.779	6.910	2.928	4.495	1.196	1.082	6.598	6.962	6.358	nan	5.593	4.662	1.280	2.347	2.575	4.645	1.665	1.256	8.991
8493	chr2	102930068	102931592	+	0	NA	Intergenic	Intergenic	-29165	NM_001039150	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	2.964	0.477	0.683	1.880	0.612	0.105	2.141	2.889	3.426	3.634	1.882	1.198	5.080	3.636	3.679	4.362	4.506	2.715	1.448	0.947	0.194	0.528	0.815	0.529	nan
943	chr1	182330692	182341227	+	0	NA	intron (NM_175127, intron 1 of 4)	intron (NM_175127, intron 1 of 4)	5647	NM_175127	67948	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	9.378	11.982	4.074	10.327	5.438	2.505	5.305	5.726	5.085	5.928	2.853	1.818	7.728	8.014	8.199	11.620	5.800	9.382	1.412	1.188	1.008	2.622	0.683	0.386	10.617
1887	chr11	3295826	3299817	+	0	NA	intron (NR_045108, intron 3 of 5)	intron (NR_045108, intron 3 of 5)	7364	NM_019574	56218	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	1.496	0.985	0.579	1.157	1.196	0.574	1.262	1.564	1.408	0.866	0.692	1.619	0.900	1.570	1.223	1.088	0.998	1.441	7.102	nan	3.214	5.008	7.631	5.872	1.068
12568	chr6	108519091	108522435	+	0	NA	intron (NM_010585, intron 59 of 61)	intron (NM_010585, intron 59 of 61)	31020	NR_106121	102465766		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	7.719	4.382	1.663	5.729	3.972	2.994	8.533	7.116	5.725	6.205	5.607	5.649	6.868	7.822	5.950	8.777	7.131	5.472	nan	2.786	2.353	2.776	1.858	1.868	6.374
4258	chr13	75969935	75983898	+	0	NA	intron (NM_029343, intron 2 of 4)	(GA)n|Simple_repeat|Simple_repeat	9177	NM_029343	75571	Mm.443291	NM_029343	ENSMUSG00000021590	Spata9	1700030K01Rik|4930599C08Rik|A930023H06Rik	spermatogenesis associated 9	protein-coding	6.137	3.882	1.544	4.139	3.846	1.860	5.002	3.545	3.907	4.063	2.249	1.562	5.410	6.942	6.484	4.971	2.325	6.454	1.342	1.216	0.648	1.238	1.293	0.736	6.689
1585	chr10	89373437	89375054	+	0	NA	Intergenic	Intergenic	69722	NM_001284344	237436	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	nan	0.401	0.469	0.457	0.655	0.393	0.431	0.383	0.216	0.324	0.256	0.125	0.105	nan	0.180	0.615	0.687	nan	3.874	4.917	2.003	4.923	nan	2.238	0.797
4709	chr14	57587593	57590086	+	0	NA	intron (NM_020506, intron 18 of 22)	intron (NM_020506, intron 18 of 22)	-17270	NM_026526	68043	Mm.45225	NM_026526	ENSMUSG00000021951	Eef1akmt1	2510005D08Rik|AW045965|Ayu21-96|Gt(pU21)96Imeg|GtAyu21-96|N6amt2	eukaryotic translation elongation factor 1 alpha lysine methyltransferase 1	protein-coding	1.990	nan	0.762	0.681	0.914	0.353	6.523	nan	1.487	2.013	2.417	0.554	5.216	4.477	3.754	3.311	2.014	1.925	0.817	0.757	0.196	0.792	0.539	0.258	4.412
11931	chr5	145014488	145024613	+	0	NA	Intergenic	Intergenic	-9914	NM_001013774	381686	Mm.332837	NM_001013774	ENSMUSG00000038770	Kpna7	AW146299|Gm1055	karyopherin alpha 7 (importin alpha 8)	protein-coding	5.754	2.857	1.052	nan	3.397	2.051	6.543	5.615	nan	7.666	3.647	2.301	5.556	9.407	7.003	nan	5.496	6.456	2.354	1.812	1.636	2.870	1.876	1.476	nan
2705	chr11	96625825	96631288	+	0	NA	intron (NM_001033186, intron 4 of 12)	intron (NM_001033186, intron 4 of 12)	148999	NM_028965	74479	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	6.808	nan	0.577	7.342	4.887	2.839	6.211	6.138	6.302	9.169	4.527	2.652	8.960	10.995	6.685	9.695	5.555	7.593	0.887	nan	1.269	1.264	nan	nan	8.193
4474	chr14	14189793	14196111	+	0	NA	Intergenic	L1VL2|LINE|L1	-16872	NM_146392	258387	Mm.377472	NM_146392	ENSMUSG00000052417	Olfr720	MOR274-2	olfactory receptor 720	protein-coding	0.735	0.463	0.413	0.454	0.447	0.234	0.274	0.652	nan	1.150	8.264	3.025	0.455	1.028	0.659	0.762	0.471	0.772	0.808	0.401	0.327	nan	0.577	0.301	0.517
7098	chr18	32100853	32105019	+	0	NA	3' UTR (NM_173441, exon 14 of 14)	3' UTR (NM_173441, exon 14 of 14)	35202	NM_173441	73473	Mm.66853	NM_173441	ENSMUSG00000024384	Iws1	1700069O15Rik|3000008H23|AL117927|AW214353	IWS1, SUPT6 interacting protein	protein-coding	0.415	1.222	0.786	1.211	0.321	0.059	0.254	0.424	0.476	0.491	0.224	0.182	0.157	0.320	0.230	nan	0.377	0.462	nan	0.667	0.581	3.992	0.344	0.405	0.778
690	chr1	137755764	137762229	+	0	NA	Intergenic	L1Md_T|LINE|L1	-207459	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	2.090	0.646	0.354	nan	0.714	0.378	1.764	2.835	2.580	1.990	9.469	3.834	2.693	nan	2.053	2.161	0.736	1.580	1.966	0.895	0.493	1.305	1.351	0.666	nan
61	chr1	24013796	24015033	+	0	NA	intron (NM_026604, intron 20 of 20)	intron (NM_026604, intron 20 of 20)	-8774	NM_026503	68002	Mm.250424	NM_026503	ENSMUSG00000026154	Sdhaf4	1110058L19Rik|1700001E18Rik|C6orf57	succinate dehydrogenase complex assembly factor 4	protein-coding	6.361	1.284	1.189	1.191	2.217	1.335	2.657	3.890	2.184	2.190	0.994	0.490	1.942	3.271	3.496	5.341	5.126	2.730	0.723	0.736	0.821	0.572	0.710	0.555	3.227
5825	chr16	16067159	16070871	+	0	NA	intron (NM_146068, intron 5 of 19)	L1_Mus3|LINE|L1	77836	NM_146068	224008	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	1.900	0.401	0.487	1.289	4.362	4.200	1.633	2.418	2.061	nan	1.542	0.839	1.053	1.531	1.027	nan	2.376	1.527	1.205	1.261	1.719	0.257	3.039	3.408	0.772
13369	chr7	87335854	87338641	+	0	NA	intron (NM_001285833, intron 13 of 19)	L1_Mur3|LINE|L1	90598	NM_001285833	50490	Mm.31748	NM_015760	ENSMUSG00000030562	Nox4	AI648021	NADPH oxidase 4	protein-coding	6.211	11.812	4.399	5.890	3.550	2.411	7.101	12.870	4.407	4.933	7.747	4.558	7.412	9.696	8.395	8.351	6.963	5.554	5.867	4.039	4.283	5.458	3.383	3.510	nan
4475	chr14	14248055	14251378	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-73636	NM_146392	258387	Mm.377472	NM_146392	ENSMUSG00000052417	Olfr720	MOR274-2	olfactory receptor 720	protein-coding	0.403	0.274	0.197	0.182	0.144	0.047	0.222	0.715	nan	0.876	7.493	4.435	0.628	1.099	0.301	0.391	0.351	0.389	0.606	0.353	0.184	nan	0.262	0.222	0.183
10691	chr4	134800362	134801435	+	0	NA	Intergenic	Intergenic	-32894	NM_145554	100017	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	3.040	1.349	1.241	2.538	3.735	1.592	1.493	1.875	1.981	2.684	1.077	0.659	1.301	3.277	1.354	1.787	1.505	2.439	1.941	1.676	1.729	1.301	2.050	1.204	1.295
7419	chr18	80451323	80460898	+	0	NA	intron (NM_026295, intron 4 of 12)	intron (NM_026295, intron 4 of 12)	13557	NM_026295	67655	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	8.151	nan	1.931	5.357	2.132	1.095	6.632	8.277	3.482	5.074	4.993	1.955	5.576	7.548	4.610	9.134	5.356	9.325	2.129	nan	1.089	2.103	1.564	1.147	13.935
13489	chr7	106693345	106696884	+	0	NA	Intergenic	L1_Mus3|LINE|L1	-5385	NM_146452	258444	Mm.271372	NM_146452	ENSMUSG00000064223	Olfr694	MOR283-9	olfactory receptor 694	protein-coding	7.343	7.490	2.107	9.698	3.138	2.044	5.311	6.210	3.796	4.993	3.876	2.306	6.745	nan	5.493	nan	3.870	nan	nan	1.402	2.047	2.284	1.448	1.031	9.771
13995	chr8	11269420	11272337	+	0	NA	intron (NR_133670, intron 1 of 52)	intron (NR_133670, intron 1 of 52)	-41927	NM_009932	12827	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	2.898	0.998	0.504	5.463	2.213	1.201	1.294	1.792	1.817	2.610	0.872	0.503	1.202	1.302	2.316	3.026	1.511	3.767	0.782	0.435	0.168	1.610	0.151	0.227	2.487
12391	chr6	86666658	86668311	+	0	NA	intron (NM_010751, intron 2 of 5)	intron (NM_010751, intron 2 of 5)	1675	NM_010751	17119	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	2.782	0.848	0.765	nan	4.851	1.819	4.734	5.976	1.907	2.178	2.393	2.706	5.407	5.104	3.986	3.907	4.061	nan	nan	0.106	0.683	0.341	0.501	0.298	2.138
8321	chr2	68793505	68795646	+	0	NA	Intergenic	Intergenic	-66866	NM_172856	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	3.968	1.841	0.781	0.433	0.388	0.209	2.162	1.456	0.478	0.920	0.369	0.140	3.286	1.885	1.387	2.461	1.697	2.509	1.176	0.587	0.114	1.139	0.563	0.226	3.231
15480	chr9	107451837	107459660	+	0	NA	intron (NM_001174047, intron 2 of 38)	intron (NM_001174047, intron 2 of 38)	19012	NR_039580	100628590		NR_039580	ENSMUSG00000092761	Mir5120	mmu-mir-5120|mu-mir-5120	microRNA 5120	ncRNA	5.401	7.812	1.984	6.310	2.729	1.624	3.663	7.805	nan	5.813	4.763	2.599	4.048	5.938	4.966	nan	3.461	nan	3.079	2.174	1.961	3.526	1.810	1.815	8.862
8201	chr2	36085251	36088028	+	0	NA	intron (NM_001083125, intron 8 of 8)	intron (NM_001083125, intron 8 of 8)	17421	NM_001083126	16874	Mm.12881	NM_008500	ENSMUSG00000026890	Lhx6	Lhx6.1	LIM homeobox protein 6	protein-coding	9.475	2.169	0.757	7.671	2.397	1.170	9.739	9.631	4.892	7.729	1.511	1.308	10.232	8.868	8.836	13.227	10.643	9.533	1.118	0.799	1.008	1.105	0.662	0.460	16.864
6076	chr16	43491038	43493298	+	0	NA	intron (NM_181058, intron 3 of 6)	intron (NM_181058, intron 3 of 6)	-71972	NR_046026	626693	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	OTTMUSG00000025617	predicted gene 15713	ncRNA	0.550	6.373	4.842	0.503	0.337	0.150	0.500	nan	0.487	0.549	1.527	0.452	0.241	0.450	0.383	0.791	0.798	0.915	0.751	0.512	0.488	0.609	0.465	0.424	0.335
5780	chr16	10417307	10419025	+	0	NA	intron (NM_011955, intron 4 of 10)	intron (NM_011955, intron 4 of 10)	6228	NM_011955	26425	Mm.29037	NM_011955	ENSMUSG00000022503	Nubp1	-	nucleotide binding protein 1	protein-coding	3.602	9.505	4.018	2.064	1.080	0.143	nan	1.701	1.951	2.360	0.638	0.828	2.003	2.897	2.293	2.463	1.963	2.598	0.919	0.559	0.814	0.725	0.761	0.441	4.434
10586	chr4	130184573	130185716	+	0	NA	Intergenic	B4A|SINE|B4	-10022	NM_023476	94242	Mm.15801	NM_023476	ENSMUSG00000028776	Tinagl1	1110021J17Rik|AZ-1|AZ1|Arg1|Lcn7|TARP|Tinagl	tubulointerstitial nephritis antigen-like 1	protein-coding	3.487	2.367	1.260	2.146	1.733	1.148	3.591	3.773	1.758	2.194	2.454	2.120	1.918	3.925	3.007	2.920	1.639	2.644	5.175	3.902	2.479	3.351	5.386	4.278	3.678
8993	chr2	165806577	165809415	+	0	NA	intron (NM_027230, intron 15 of 23)	intron (NM_027230, intron 15 of 23)	50177	NM_001252585	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	6.093	13.830	8.561	6.532	3.589	2.291	1.989	3.717	3.418	3.422	3.235	2.921	2.244	3.025	2.866	3.449	2.923	3.699	nan	2.855	2.236	1.382	1.384	0.810	3.769
2654	chr11	94187391	94194364	+	0	NA	Intergenic	Intergenic	-20577	NM_009427	22057	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	6.585	nan	1.954	5.668	5.739	4.823	7.508	7.674	5.816	7.902	2.385	2.201	7.465	10.200	5.910	8.151	8.226	7.128	4.218	nan	3.549	3.619	nan	nan	6.387
13954	chr7	152122880	152129927	+	0	NA	Intergenic	Intergenic	6811568	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	7.517	nan	0.923	6.743	1.397	1.070	9.776	8.292	6.169	9.139	7.654	5.814	9.401	10.754	9.537	11.042	8.167	9.405	2.373	0.538	0.659	0.774	nan	0.599	18.281
4144	chr13	53744005	53748001	+	0	NA	Intergenic	MTC|LTR|ERVL-MaLR	97418	NR_131010	75252	Mm.401989	NR_131010		4930555G21Rik	-	RIKEN cDNA 4930555G21 gene	ncRNA	nan	0.537	0.159	0.268	0.083	0.062	0.169	0.207	0.164	0.113	0.125	0.052	0.057	nan	0.201	nan	0.177	nan	0.782	1.381	0.677	4.805	0.355	0.399	nan
13949	chr7	151813622	151815329	+	0	NA	Intergenic	Intergenic	6499640	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	nan	nan	0.151	2.623	0.448	0.509	3.128	3.281	4.431	4.363	2.420	1.008	4.364	5.302	3.403	5.833	2.272	4.369	0.489	0.393	0.431	0.470	nan	0.208	7.537
3627	chr12	99983763	99986456	+	0	NA	intron (NM_146037, intron 2 of 2)	Lx7|LINE|L1	20610	NM_001164427	217826	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	8.433	4.957	2.606	4.728	4.167	2.347	6.518	3.965	3.924	7.579	3.964	2.962	7.074	7.770	6.647	7.261	7.313	5.869	4.247	3.017	3.504	3.556	3.549	4.646	9.889
8008	chr2	24795719	24797701	+	0	NA	intron (NM_001012518, intron 25 of 26)	intron (NM_001012518, intron 25 of 26)	-33558	NM_007579	12287	Mm.4424	NM_007579	ENSMUSG00000004113	Cacna1b	AW050276|AW060892|AW822256|BIII|Cav2.2|Cchn1a|alpha(1B)	calcium channel, voltage-dependent, N type, alpha 1B subunit	protein-coding	1.067	0.571	0.962	0.760	1.657	2.483	4.069	6.113	2.516	1.284	3.004	5.042	2.982	1.782	1.435	1.493	1.281	1.539	0.667	0.874	1.071	0.424	0.951	1.249	0.965
5907	chr16	22877341	22883568	+	0	NA	TTS (NM_026400)	TTS (NM_026400)	-11561	NR_075099	11625	Mm.197554	NM_013465	ENSMUSG00000022868	Ahsg	-	alpha-2-HS-glycoprotein	protein-coding	9.253	0.895	0.532	2.750	3.301	1.919	6.442	8.505	3.476	5.758	0.981	0.749	7.515	8.145	5.211	nan	4.522	7.095	3.522	2.447	2.151	5.898	1.956	1.858	8.923
7466	chr19	3922603	3923541	+	0	NA	intron (NM_026316, intron 2 of 9)	intron (NM_026316, intron 2 of 9)	6644	NM_026316	67689	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	5.488	10.174	4.820	4.045	2.289	0.267	2.337	1.727	3.102	3.465	2.073	1.168	1.412	3.284	2.224	2.747	2.645	2.473	0.779	2.435	1.122	0.874	1.201	0.606	4.741
3200	chr12	16595661	16596948	+	0	NA	Intergenic	MTC|LTR|ERVL-MaLR	-6534	NM_172950	14245	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	4631420P06|Kiaa0188|Lipin1|fld|mKIAA0188	lipin 1	protein-coding	5.991	9.026	2.940	8.082	3.024	1.666	3.465	4.308	2.933	3.904	2.277	2.158	2.972	4.591	5.878	6.481	3.383	4.885	4.459	2.154	2.652	4.460	2.678	2.890	11.679
14925	chr9	25602398	25604163	+	0	NA	intron (NM_026189, intron 7 of 7)	intron (NM_026189, intron 7 of 7)	121683	NM_026189	67484	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.351	0.756	0.221	0.507	0.331	0.068	0.358	0.452	0.390	0.162	0.143	0.112	0.209	0.148	0.505	nan	0.070	0.501	4.745	5.763	2.126	6.296	5.144	4.273	0.679
5443	chr15	79963158	79966072	+	0	NA	Intergenic	L1MDa|LINE|L1	-31969	NM_144811	52609	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	8.890	nan	2.779	7.271	2.633	1.446	10.155	15.901	5.173	nan	nan	4.141	10.487	9.213	9.555	9.370	8.225	8.708	4.872	2.686	2.426	5.642	3.813	2.841	11.343
5503	chr15	83255971	83260512	+	0	NA	Intergenic	Intergenic	-6467	NM_001004150	239559	Mm.323805	NM_001004150	ENSMUSG00000047878	A4galt	-	alpha 1,4-galactosyltransferase	protein-coding	6.503	2.992	2.401	4.378	4.642	3.186	3.805	4.305	3.841	4.205	2.542	2.223	2.972	5.514	nan	3.161	3.627	5.483	nan	2.000	1.371	nan	1.054	1.060	4.050
5536	chr15	85661579	85663491	+	0	NA	Intergenic	Intergenic	-41238	NR_110483	102800312	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	5.698	5.585	1.789	5.503	2.619	1.725	5.073	9.913	nan	4.466	2.764	2.142	5.122	5.459	nan	5.290	4.529	4.915	nan	1.517	1.819	nan	1.135	1.422	7.232
573	chr1	129877534	129882310	+	0	NA	intron (NM_172485, intron 12 of 27)	intron (NM_172485, intron 12 of 27)	543121	NM_007827	13137	Mm.436759	NM_007827	ENSMUSG00000026401	Cd55b	AI323748|Daf|Daf-TM|Daf2|TM-DAF	CD55 molecule, decay accelerating factor for complement B	protein-coding	10.314	nan	0.722	3.532	3.777	2.347	6.033	4.756	3.824	4.135	5.197	1.225	6.232	6.626	7.179	8.783	4.776	6.689	nan	0.664	0.482	1.170	0.841	0.653	7.345
14074	chr8	24145369	24147427	+	0	NA	Intergenic	L1Md_F2|LINE|L1	292548	NM_026931	69068	Mm.25775	NM_026931	ENSMUSG00000056313	1810011O10Rik	1110065B09Rik|AW121743|AW321058	RIKEN cDNA 1810011O10 gene	protein-coding	1.063	nan	0.310	1.669	1.760	0.658	3.540	5.806	2.531	2.406	5.232	4.460	1.476	4.338	4.589	1.884	1.071	2.288	1.236	0.705	0.921	1.074	1.091	0.464	1.880
11592	chr5	114819150	114834416	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-3315	NM_181075	330173	Mm.482205	NM_181075	ENSMUSG00000092486	2610524H06Rik	-	RIKEN cDNA 2610524H06 gene	protein-coding	6.908	3.707	1.414	9.876	5.928	3.410	6.653	5.849	7.222	9.284	3.671	3.097	6.160	10.234	6.989	7.572	4.692	8.225	nan	nan	1.586	1.922	nan	1.656	8.368
12353	chr6	83217555	83219200	+	0	NA	Intergenic	Intergenic	-18998	NM_001166067	232156	Mm.333189	NM_001166067	ENSMUSG00000068323	Slc4a5	C330006M16|C330016K18Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 5	protein-coding	5.523	5.023	2.803	4.330	1.737	0.961	7.657	5.184	3.580	4.382	1.502	1.184	5.154	6.567	7.287	8.664	5.008	5.672	nan	1.158	1.930	2.003	1.801	1.871	6.276
2710	chr11	96803381	96806181	+	0	NA	intron (NM_007622, intron 4 of 5)	intron (NM_007622, intron 4 of 5)	-6625	NR_033523	629750	Mm.390396	NR_033523		Gm11517	OTTMUSG00000001634	ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene	pseudo	5.489	nan	1.651	4.204	4.112	2.087	4.835	5.795	3.095	4.641	3.789	2.721	3.773	7.311	5.445	6.773	5.058	5.024	3.229	nan	1.905	3.077	nan	nan	5.772
1084	chr10	7551338	7570887	+	0	NA	Intergenic	Intergenic	-28688	NM_172784	237253	Mm.206759	NM_172784	ENSMUSG00000019796	Lrp11	1700034J19Rik|6330533B21|9830160H19Rik	low density lipoprotein receptor-related protein 11	protein-coding	2.536	14.944	6.916	1.909	1.365	0.903	1.456	1.568	1.370	1.564	0.734	0.510	1.420	1.966	2.267	2.170	1.311	1.938	1.370	1.073	0.779	1.041	0.658	0.490	2.514
6824	chr17	71386502	71389786	+	0	NA	intron (NM_028887, intron 28 of 47)	intron (NM_028887, intron 28 of 47)	-46340	NR_028023	100043644	Mm.362377	NR_028023		Gm4566	-	ubiquitin specific peptidase 16 pseudogene	pseudo	0.902	0.789	0.243	1.948	1.931	0.666	0.992	0.724	nan	3.432	0.664	0.668	1.411	nan	1.556	2.897	1.098	2.376	2.006	1.434	0.916	4.576	1.272	0.697	2.477
12311	chr6	72017569	72018979	+	0	NA	intron (NR_046180, intron 1 of 2)	intron (NR_046180, intron 1 of 2)	24254	NR_046180	330350	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	1.334	0.604	0.553	1.084	2.484	1.030	4.224	2.409	2.176	2.077	0.759	0.402	4.145	4.859	3.131	3.717	4.285	2.915	0.745	0.521	0.348	0.530	0.226	0.461	2.155
11691	chr5	123401373	123402816	+	0	NA	intron (NM_133917, intron 1 of 16)	B2_Mm2|SINE|B2	7296	NM_177582	208104	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	3.054	5.684	1.327	5.154	1.551	0.729	3.313	4.650	2.706	5.479	1.120	1.144	3.516	4.441	6.072	6.768	nan	4.012	5.757	2.056	3.462	11.636	3.616	3.541	8.289
5324	chr15	74570529	74572217	+	0	NA	intron (NM_174991, intron 19 of 30)	intron (NM_174991, intron 19 of 30)	55177	NM_174991	107831	Mm.43133	NM_174991	ENSMUSG00000034730	Adgrb1	B830018M07Rik|Bai1|R75078|mKIAA4089	adhesion G protein-coupled receptor B1	protein-coding	2.466	nan	0.381	2.867	1.256	0.366	2.602	9.852	2.267	2.664	3.850	2.962	5.558	5.018	4.014	4.559	3.051	3.586	2.960	2.054	0.578	5.421	1.225	0.943	3.801
11831	chr5	137059856	137061455	+	0	NA	TTS (NM_008871)	TTS (NM_008871)	11617	NM_008871	18787	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	4.048	2.058	1.036	2.225	2.400	1.132	4.620	4.523	2.410	2.119	4.425	1.906	1.809	4.495	4.028	3.183	2.240	3.296	0.400	0.554	0.415	0.273	nan	0.476	4.506
638	chr1	135105475	135112595	+	0	NA	exon (NM_007955, exon 37 of 38)	exon (NM_007955, exon 37 of 38)	-3759	NM_001033409	329252	Mm.279594	NM_001033409	ENSMUSG00000042793	Lgr6	A530037C04Rik|D830026M09	leucine-rich repeat-containing G protein-coupled receptor 6	protein-coding	4.628	1.043	0.713	nan	1.315	0.909	4.892	6.542	1.534	1.512	1.442	2.057	5.111	4.672	3.984	5.292	3.098	3.251	1.768	0.754	0.746	2.108	1.817	1.282	4.132
3446	chr12	77331784	77333384	+	0	NA	intron (NR_045554, intron 4 of 11)	intron (NR_045554, intron 4 of 11)	-56280	NM_001252615	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	6.107	0.547	0.562	1.258	1.213	0.937	4.753	3.563	2.257	2.381	0.966	0.829	3.049	4.208	3.009	4.447	7.957	2.142	0.896	1.454	0.845	0.571	0.847	0.610	3.884
13506	chr7	108075016	108081920	+	0	NA	Intergenic	Intergenic	-2328	NM_146925	258927	Mm.358934	NM_146925	ENSMUSG00000054236	Olfr481	MOR204-2|MOR204-39	olfactory receptor 481	protein-coding	4.519	2.225	0.966	6.642	2.025	0.864	5.312	7.227	2.601	5.184	4.186	2.123	5.855	5.667	5.974	7.199	3.832	6.602	nan	1.341	1.287	4.575	1.469	1.686	10.130
3218	chr12	21231522	21233732	+	0	NA	intron (NM_001004364, intron 15 of 26)	PB1D7|SINE|Alu	53610	NM_008403	16413	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding	3.041	4.225	0.914	4.748	1.775	1.001	3.084	2.407	2.615	2.851	1.692	1.256	2.355	2.187	3.848	3.530	1.935	4.436	1.400	0.510	0.446	2.191	0.985	0.912	6.455
15355	chr9	83377340	83378544	+	0	NA	Intergenic	Intergenic	-53605	NR_102437	100039186	Mm.212721	NR_102437	ENSMUSG00000099718	Gm2087	-	predicted gene 2087	ncRNA	3.325	0.998	0.725	1.222	0.841	0.397	0.910	2.111	2.841	2.776	1.082	0.533	3.286	2.808	3.081	3.234	3.085	2.828	1.043	0.582	0.665	0.619	0.406	0.421	4.214
2937	chr11	109262752	109276509	+	0	NA	intron (NM_001165934, intron 7 of 16)	intron (NM_001165934, intron 7 of 16)	28551	NM_001165934	19739	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	1.089	13.164	8.751	nan	1.055	0.498	0.608	0.440	nan	nan	0.504	0.344	0.309	nan	0.779	0.715	0.495	nan	0.761	0.775	0.731	nan	0.639	0.538	0.645
661	chr1	136593194	136597246	+	0	NA	Intergenic	ORR1F|LTR|ERVL-MaLR	-29681	NM_177643	226442	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.584	0.745	0.445	nan	0.118	0.288	0.392	0.459	0.309	0.371	0.267	0.203	0.275	nan	0.461	0.929	0.414	0.597	2.510	1.870	1.860	5.503	1.664	1.324	nan
3157	chr12	4455754	4457381	+	0	NA	intron (NM_010881, intron 1 of 22)	intron (NM_010881, intron 1 of 22)	20615	NM_010881	17977	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	3.475	5.705	3.064	2.694	1.108	0.507	3.112	3.490	2.473	2.165	0.629	0.702	4.181	3.649	4.245	4.389	3.187	3.713	1.215	0.632	0.520	1.798	0.421	0.488	2.783
14929	chr9	29581970	29585236	+	0	NA	intron (NM_172290, intron 1 of 7)	L1ME2|LINE|L1	379526	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	3.391	0.467	0.176	1.737	1.030	0.194	0.540	0.380	1.926	2.023	0.153	0.090	0.531	0.767	2.088	nan	0.765	4.721	0.616	0.430	0.274	1.018	0.336	0.245	5.268
2482	chr11	76295240	76298694	+	0	NA	intron (NM_008750, intron 1 of 7)	intron (NM_008750, intron 1 of 7)	53231	NM_183263	67390	Mm.24886	NM_183263	ENSMUSG00000038046	Rnmtl1	4833420N02Rik|AI255153|HC90|Mrm3	RNA methyltransferase like 1	protein-coding	7.468	14.949	6.343	5.320	3.988	1.590	3.552	4.265	4.433	3.956	3.794	2.292	4.160	5.333	4.842	5.939	4.337	5.890	3.647	2.352	nan	4.253	2.279	1.059	6.900
10820	chr4	141098937	141104343	+	0	NA	intron (NM_177867, intron 7 of 14)	intron (NM_177867, intron 7 of 14)	13295	NM_177867	329972	Mm.247201	NM_177867	ENSMUSG00000045004	Spata21	4933414G08	spermatogenesis associated 21	protein-coding	8.279	10.003	3.486	8.906	5.144	3.263	6.582	7.155	nan	11.154	6.102	2.795	7.960	9.937	7.386	8.915	6.064	nan	6.413	3.165	3.131	7.085	nan	5.479	11.088
1935	chr11	5698263	5703738	+	0	NA	Intergenic	MT2A|LTR|ERVL	6699	NM_026080	64660	Mm.7328	NM_026080	ENSMUSG00000020477	Mrps24	3110030K20Rik|AI414579|Rpms24	mitochondrial ribosomal protein S24	protein-coding	nan	1.117	0.385	4.314	2.102	1.362	6.073	6.422	4.345	5.504	3.746	0.697	6.710	8.291	5.588	7.235	3.251	6.217	0.673	nan	0.352	0.823	0.272	0.307	6.855
2719	chr11	97169075	97176218	+	0	NA	intron (NM_008379, intron 10 of 21)	intron (NM_008379, intron 10 of 21)	15246	NM_008379	16211	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	4.899	nan	0.806	3.067	5.333	4.715	2.452	5.399	3.379	3.278	3.596	3.050	3.236	4.201	3.075	3.831	nan	4.290	1.103	nan	1.828	2.170	nan	nan	3.877
2690	chr11	95702139	95706720	+	0	NA	intron (NR_045780, intron 1 of 1)	MLT1D|LTR|ERVL-MaLR	8325	NR_045780	432396	Mm.426849	NR_045780	ENSMUSG00000086191	Zfp652os	1110035M17Rik	zinc finger protein 652, opposite strand	ncRNA	7.061	7.730	2.701	6.217	3.957	1.863	2.170	2.377	3.314	4.018	2.806	1.125	1.779	4.330	2.689	4.017	nan	4.551	0.778	nan	1.265	0.885	nan	nan	5.538
14520	chr8	107818596	107823574	+	0	NA	Intergenic	Intergenic	-232603	NM_010817	17463	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	5.197	4.841	1.410	5.427	2.279	1.463	3.316	5.628	3.142	3.933	2.417	1.562	4.107	4.680	5.509	6.146	3.681	5.824	2.817	2.151	1.682	4.000	1.831	1.454	7.575
2727	chr11	97536406	97548917	+	0	NA	intron (NM_018873, intron 3 of 19)	intron (NM_018873, intron 3 of 19)	32465	NM_018873	56013	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	2.788	nan	1.691	4.819	2.674	1.834	3.011	2.537	2.928	4.719	0.793	0.952	3.825	6.607	4.362	5.506	nan	4.146	1.227	nan	1.072	1.901	nan	nan	5.197
4046	chr13	43872917	43874980	+	0	NA	Intergenic	Intergenic	88836	NM_001289915	12522	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	7.920	8.277	5.452	nan	2.799	1.585	6.104	2.684	3.324	4.138	2.201	1.269	3.048	5.423	4.263	5.799	5.951	3.042	0.783	nan	0.619	0.518	0.613	0.783	5.975
11990	chr5	150273995	150276426	+	0	NA	intron (NM_172887, intron 1 of 60)	(TTG)n|Simple_repeat|Simple_repeat	15280	NM_172887	320365	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	0.841	1.114	0.557	nan	0.178	0.205	0.504	0.404	nan	0.501	0.719	0.392	0.384	0.391	0.378	nan	0.910	0.784	4.103	4.012	1.615	2.871	5.784	4.752	nan
8128	chr2	32138737	32140596	+	0	NA	Intergenic	Intergenic	-11482	NM_172661	227723	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	3.037	0.776	0.716	2.302	1.664	1.182	2.602	1.871	2.047	2.206	0.672	0.511	3.849	4.051	2.554	3.362	4.283	2.742	0.646	0.775	0.658	0.745	0.704	0.788	2.409
9240	chr3	37603447	37606016	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-5160	NR_130162	75947	Mm.109620	NR_130161	ENSMUSG00000085677	4930594O21Rik	-	RIKEN cDNA 4930594O21 gene	ncRNA	7.125	0.886	0.779	4.666	5.194	4.232	9.331	5.962	5.980	6.998	1.927	1.712	10.009	8.747	7.845	9.695	8.802	7.905	nan	1.586	1.846	nan	1.260	1.067	8.540
4567	chr14	30088618	30092394	+	0	NA	intron (NM_001302637, intron 30 of 48)	intron (NM_001302637, intron 30 of 48)	67873	NM_175343	218865	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	5.573	0.569	0.320	2.431	2.570	1.407	2.298	1.019	2.538	3.988	0.266	0.427	2.962	3.832	2.835	4.595	2.420	nan	0.396	0.548	0.343	nan	0.356	0.277	4.853
4328	chr13	99953488	99957516	+	0	NA	intron (NM_030026, intron 13 of 16)	intron (NM_030026, intron 13 of 16)	-54819	NM_001081493	27220	Mm.75498	NM_013732	ENSMUSG00000021647	Cartpt	Cart	CART prepropeptide	protein-coding	5.181	2.112	1.251	5.863	1.440	0.799	2.006	1.738	2.370	2.522	1.127	0.784	1.690	1.908	2.070	3.012	nan	3.622	1.053	1.408	0.853	1.606	0.693	0.658	4.533
6676	chr17	46745955	46751200	+	0	NA	intron (NM_028065, intron 1 of 5)	intron (NM_028065, intron 1 of 5)	3637	NM_001305989	72029	Mm.240325	NM_028065	ENSMUSG00000023973	Cnpy3	1600025D17Rik|2410050O22Rik|AI413153|CAG4A|ERDA5|PRAT4A|Tnrc5	canopy FGF signaling regulator 3	protein-coding	5.073	0.544	0.271	3.272	3.481	2.427	9.217	5.902	2.882	4.106	5.528	3.967	4.590	6.094	5.964	8.326	6.339	4.553	1.692	0.921	0.890	1.634	0.924	0.729	7.321
6837	chr17	72011788	72017167	+	0	NA	intron (NM_007439, intron 5 of 28)	intron (NM_007439, intron 5 of 28)	232530	NM_030179	78785	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	4.360	1.345	0.797	2.848	3.124	2.335	3.795	2.533	nan	4.549	1.317	1.145	7.121	7.512	5.003	7.171	7.642	4.524	1.201	1.331	1.301	1.215	0.970	0.871	5.668
6709	chr17	48034280	48037998	+	0	NA	TTS (NM_029689)	TTS (NM_029689)	2154	NM_029689	76651	Mm.76918	NM_029689	ENSMUSG00000094928	1700122O11Rik	-	RIKEN cDNA 1700122O11 gene	protein-coding	3.492	2.761	1.226	4.071	2.621	1.836	6.157	6.090	4.191	5.323	1.367	1.213	5.294	6.002	6.585	7.537	4.001	5.848	3.088	1.323	1.945	4.417	1.975	1.272	8.142
13598	chr7	118076729	118079652	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	37957	NM_170669	267019	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	6.466	1.086	0.538	4.971	4.658	2.455	5.471	4.195	5.381	7.980	1.375	0.802	9.300	8.833	4.000	4.605	5.485	8.352	0.645	0.785	0.422	0.713	0.722	0.480	6.345
6097	chr16	45796560	45798866	+	0	NA	intron (NM_001252442, intron 5 of 18)	intron (NM_001252442, intron 5 of 18)	46665	NM_153412	208177	Mm.211477	NM_153412	ENSMUSG00000033149	Phldb2	AV253284|C820004H04Rik|LL5b|LL5beta	pleckstrin homology like domain, family B, member 2	protein-coding	3.024	1.049	1.024	2.253	3.817	2.032	1.756	2.958	1.724	2.190	1.139	0.567	1.336	2.946	1.619	2.571	1.722	2.881	3.595	6.126	2.262	4.296	3.448	1.660	2.266
9762	chr3	121765220	121766422	+	0	NA	intron (NM_008991, intron 20 of 22)	intron (NM_008991, intron 20 of 22)	42284	NM_010171	14066	Mm.273188	NM_010171	ENSMUSG00000028128	F3	AA409063|CD142|Cf-3|Cf3|TF	coagulation factor III	protein-coding	2.797	1.062	0.536	2.194	3.242	1.371	3.418	1.698	3.003	3.402	1.019	1.056	3.202	4.643	3.646	3.929	2.172	4.188	0.487	0.287	0.180	0.600	nan	0.246	nan
6780	chr17	64949380	64952040	+	0	NA	Intergenic	Intergenic	-114639	NM_030031	78057	Mm.109380	NM_030031	ENSMUSG00000024088	4930583I09Rik	-	RIKEN cDNA 4930583I09 gene	protein-coding	8.348	19.994	4.083	13.627	1.966	1.387	3.946	5.629	nan	12.009	8.888	4.107	4.174	5.715	9.067	8.525	3.665	8.930	5.674	1.654	2.612	6.546	2.562	3.312	18.078
3025	chr11	117059953	117064771	+	0	NA	Intergenic	Intergenic	-14421	NR_027059	76972	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	3.423	nan	0.358	1.473	1.577	0.714	8.125	5.079	2.515	nan	5.791	4.397	3.625	5.148	5.656	7.317	2.813	nan	2.798	nan	1.478	3.025	1.457	1.723	9.956
8913	chr2	158893528	158895525	+	0	NA	Intergenic	Intergenic	99719	NM_001291144	71715	Mm.315652	NM_145742	ENSMUSG00000027655	Dhx35	1200009D07Rik|Ddx35	DEAH (Asp-Glu-Ala-His) box polypeptide 35	protein-coding	3.825	0.616	0.570	4.725	1.929	1.657	1.123	0.941	3.100	5.431	0.776	0.487	nan	5.262	4.063	3.656	1.094	8.349	nan	0.758	0.552	1.092	0.615	0.524	9.433
11404	chr5	89833642	89837431	+	0	NA	intron (NM_001081401, intron 3 of 21)	intron (NM_001081401, intron 3 of 21)	47798	NM_177872	330119	Mm.133062	NM_177872	ENSMUSG00000043635	Adamts3	1100001H14Rik|6330442E02Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	protein-coding	3.459	0.441	0.335	1.005	1.349	0.434	3.522	1.957	2.387	2.175	1.101	0.572	2.800	2.555	3.774	4.393	3.666	3.569	0.588	0.433	0.110	0.305	0.516	0.476	3.189
2910	chr11	106633751	106634922	+	0	NA	Intergenic	Intergenic	-21406	NM_198292	21763	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	2.384	1.375	0.700	1.627	1.811	0.730	1.855	1.902	nan	2.276	0.676	0.658	1.711	2.913	2.015	2.633	1.986	1.722	0.581	0.816	0.867	nan	0.603	0.095	1.358
1991	chr11	17058654	17062010	+	0	NA	intron (NM_029861, intron 2 of 2)	MusHAL1|LINE|L1	8398	NM_029861	380686	Mm.425666	NM_029861	ENSMUSG00000044629	Cnrip1	1500041B16Rik|3110054C06Rik|5330437A18Rik|AI854501|C2orf32	cannabinoid receptor interacting protein 1	protein-coding	nan	8.047	2.986	8.059	5.225	3.241	6.648	6.704	5.309	10.603	6.204	2.947	5.970	7.962	5.679	7.430	5.662	7.112	4.359	2.989	3.137	5.023	3.380	4.314	8.658
8369	chr2	75130151	75131293	+	0	NA	Intergenic	Intergenic	304910	NM_016804	53375	Mm.292613	NM_016804	ENSMUSG00000027099	Mtx2	1500012G02Rik	metaxin 2	protein-coding	3.221	0.760	0.150	nan	2.408	0.958	3.939	3.106	2.746	3.008	0.441	1.006	4.419	3.613	3.224	2.843	3.188	3.192	0.960	1.507	0.952	1.098	0.990	1.349	nan
927	chr1	180674378	180682356	+	0	NA	intron (NM_001103182, intron 11 of 14)	L1ME2|LINE|L1	18667	NM_013729	27217	Mm.103647	NM_013729	ENSMUSG00000026497	Mixl1	Mm1|Mml	Mix1 homeobox-like 1 (Xenopus laevis)	protein-coding	0.402	0.478	0.244	0.275	0.179	0.062	0.226	0.350	0.282	0.239	0.457	0.191	0.144	nan	0.184	0.656	0.453	0.388	2.178	1.507	1.225	5.860	0.621	0.621	0.429
5475	chr15	81661321	81671959	+	0	NA	intron (NR_110362, intron 1 of 16)	B2_Mm2|SINE|B2	2751	NR_110362	214669	Mm.280768	NM_145993	ENSMUSG00000022394	L3mbtl2	4732493N06Rik|M4mbt	l(3)mbt-like 2 (Drosophila)	protein-coding	4.906	nan	0.842	5.230	3.567	2.710	5.972	12.597	3.136	nan	nan	0.956	6.544	nan	4.119	4.939	nan	4.133	1.730	1.470	1.715	nan	2.382	2.454	5.812
5855	chr16	19007982	19011579	+	0	NA	Intergenic	(TGGA)n|Simple_repeat|Simple_repeat	133030	NM_010435	15260	Mm.15694	NM_010435	ENSMUSG00000022702	Hira	AA138857|D16Ertd95e|Gm15797|N28177|OTTMUSG00000026264|Tuple1	histone cell cycle regulator	protein-coding	0.380	11.023	7.644	0.909	0.695	0.171	0.473	0.348	0.810	nan	0.240	0.243	0.229	0.258	0.450	nan	0.800	0.575	0.802	1.494	0.456	0.334	0.475	0.323	0.252
9467	chr3	89152249	89154510	+	0	NA	intron (NM_008227, intron 1 of 7)	intron (NM_008227, intron 1 of 7)	6778	NM_008227	15168	Mm.389461	NM_008227	ENSMUSG00000028051	Hcn3	BCNG-4|Bcng4|Hac3|Hcn4	hyperpolarization-activated, cyclic nucleotide-gated K+ 3	protein-coding	7.228	5.881	1.472	9.324	4.498	1.880	6.632	6.499	3.548	6.872	2.371	1.764	5.593	7.839	5.853	6.611	4.544	6.107	3.693	1.681	2.162	3.439	2.853	2.686	11.120
15471	chr9	106587177	106588666	+	0	NA	Intergenic	L1Md_T|LINE|L1	-16954	NM_026090	67320	Mm.335431	NM_026090	ENSMUSG00000041009	Iqcf4	1700042N06Rik|mtIQ1	IQ motif containing F4	protein-coding	4.888	9.110	2.043	7.690	2.006	0.819	4.541	6.317	2.241	8.679	3.370	2.634	3.590	5.441	5.913	6.603	2.347	6.164	3.329	1.314	1.679	4.223	1.526	2.666	13.267
12764	chr6	134107478	134108886	+	0	NA	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	72482	NM_007961	14011	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	3.206	1.745	1.364	1.723	1.361	0.607	1.306	2.712	2.904	1.573	3.480	1.482	1.038	2.405	1.949	2.179	1.896	2.571	1.737	0.852	0.698	0.889	0.953	0.404	1.499
11743	chr5	125955676	125956878	+	0	NA	Intergenic	L1MDa|LINE|L1	423859	NM_001190352	208151	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding	3.793	9.493	1.859	6.452	0.532	0.860	3.300	3.853	3.700	5.677	3.508	2.712	2.851	4.088	5.872	6.392	1.662	6.099	4.927	1.337	1.951	7.915	2.235	1.204	7.426
3180	chr12	9845162	9847690	+	0	NA	Intergenic	L1_Mur2|LINE|L1	271984	NM_011859	23967	Mm.45055	NM_011859	ENSMUSG00000048387	Osr1	Odd1|Osr	odd-skipped related 1 (Drosophila)	protein-coding	4.464	0.375	0.256	1.370	2.730	1.240	4.014	2.536	2.493	2.445	3.410	2.231	4.777	4.836	4.153	3.821	3.382	3.679	0.551	0.636	0.143	0.522	0.509	0.415	4.301
13852	chr7	145410829	145413584	+	0	NA	Intergenic	Intergenic	97371	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	3.534	nan	0.439	nan	0.617	0.314	3.569	1.995	4.123	5.264	0.758	0.419	7.306	5.228	4.761	5.914	5.230	3.579	2.063	1.099	0.500	2.662	nan	0.506	5.424
13817	chr7	138123365	138124614	+	0	NA	Intergenic	Intergenic	273741	NM_183289	70571	Mm.334297	NM_183289	ENSMUSG00000091002	Tcerg1l	5730476P14Rik	transcription elongation regulator 1-like	protein-coding	1.325	nan	0.337	1.730	2.077	0.759	2.211	2.051	nan	1.847	3.616	1.900	2.269	2.949	2.322	2.200	1.329	3.997	0.518	0.246	0.103	0.603	0.251		2.198
10866	chr4	144828553	144832763	+	0	NA	Intergenic	Lx2B2|LINE|L1	-44075	NM_001126316	329993	Mm.297407	NM_001126316	ENSMUSG00000078504	Gm438	-	predicted gene 438	protein-coding	7.297	7.074	3.514	4.941	4.986	3.916	4.433	3.311	3.609	3.782	2.965	1.740	4.061	5.080	5.567	5.176	2.830	4.846	4.054	2.663	2.309	3.907	2.510	2.096	6.391
13040	chr7	27955271	27959561	+	0	NA	Intergenic	RLTR14-int|LTR|ERV1	21741	NM_001081021	338354	Mm.389873	NM_001081021	ENSMUSG00000063047	Zfp780b	B230208L21Rik	zinc finger protein 780B	protein-coding	0.718	12.024	6.270	0.777	0.797	0.465	0.877	1.651	0.756	0.674	0.621	0.288	0.486	0.808	0.712	0.869	0.790	0.997	0.592	0.540	0.537	0.520	0.514	0.455	0.908
11387	chr5	87232569	87234762	+	0	NA	Intergenic	L1Md_F3|LINE|L1	21123	NM_053215	112417	Mm.160362	NM_053215	ENSMUSG00000057425	Ugt2b37	0610033E06Rik	UDP glucuronosyltransferase 2 family, polypeptide B37	protein-coding	9.560	14.524	6.115	12.251	9.215	7.093	9.481	9.434	7.453	13.511	8.943	5.353	7.724	10.425	10.523	10.674	7.651	10.019	5.888	3.846	7.108	6.950	5.367	8.516	11.848
10447	chr4	119206072	119213930	+	0	NA	exon (NM_029198, exon 5 of 7)	exon (NM_029198, exon 5 of 7)	8216	NM_029198	75180	Mm.179335	NM_029198	ENSMUSG00000028642	Tmem269	4930538K18Rik	transmembrane protein 269	protein-coding	4.142	3.572	1.292	4.437	4.121	2.559	3.069	3.760	3.318	7.193	2.429	1.722	4.315	6.305	4.968	5.233	3.010	4.921	5.697	4.984	4.327	6.874	5.062	4.192	6.365
652	chr1	136101319	136103652	+	0	NA	intron (NM_014193, intron 28 of 42)	L2b|LINE|L2	28698	NR_046168	329253	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21|OTTMUSG00000026868	predicted gene 15850	ncRNA	8.596	1.264	0.556	3.229	1.813	1.341	8.244	6.297	4.149	5.180	0.345	1.545	7.970	9.845	7.559	12.439	7.690	6.407	1.712	0.847	0.359	2.273	0.604	0.637	10.038
7194	chr18	39347146	39348267	+	0	NA	intron (NM_175164, intron 20 of 22)	intron (NM_175164, intron 20 of 22)	139539	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	5.451	1.411	0.583	3.755	1.103	0.582	3.602	5.351	2.902	3.425	1.323	0.811	4.890	3.315	3.829	7.275	4.015	5.831	1.010	0.795	1.174	0.709	0.239	0.189	6.789
8683	chr2	131914776	131948440	+	0	NA	intron (NM_001278256, intron 3 of 3)	intron (NM_001278256, intron 3 of 3)	-19253	NM_001278257	26434	Mm.180750	NM_023043	ENSMUSG00000027338	Prnd	AI450264|Dpl|PrPLP|doppel	prion protein dublet	protein-coding	6.332	4.644	2.950	5.188	5.060	2.821	4.025	6.440	5.825	6.242	1.638	1.995	6.525	7.602	5.795	nan	6.989	6.684	nan	1.734	1.145	1.796	1.549	1.107	6.481
9598	chr3	100861648	100866051	+	0	NA	intron (NM_178594, intron 1 of 5)	intron (NM_178594, intron 1 of 5)	38390	NM_178594	242122	Mm.137467	NM_178594	ENSMUSG00000051076	Vtcn1	B7h4|B7s1|B7x|BC032925	V-set domain containing T cell activation inhibitor 1	protein-coding	4.402	1.805	0.933	3.250	3.406	1.267	4.889	1.910	3.401	3.985	nan	1.104	3.862	5.782	4.527	6.815	5.404	4.029	1.302	1.926	0.609	0.912	1.365	0.876	7.486
7929	chr2	4486659	4492279	+	0	NA	intron (NM_001347086, intron 5 of 24)	intron (NM_001347086, intron 5 of 24)	-70285	NM_001177844	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	6.306	2.051	1.134	5.818	3.477	1.761	3.255	2.620	3.607	3.390	1.185	0.821	5.390	4.219	3.659	5.650	5.194	6.701	1.554	1.456	0.923	1.495	1.011	0.626	7.283
10368	chr4	108513900	108516431	+	0	NA	intron (NM_175472, intron 14 of 30)	B3|SINE|B2	55739	NM_175472	230594	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	4.244	0.726	0.363	1.994	4.627	2.510	4.704	3.943	3.843	3.494	4.022	5.286	3.452	5.418	3.943	3.570	2.526	3.474	3.310	2.700	2.807	3.138	3.266	3.128	3.984
14233	chr8	55613752	55616115	+	0	NA	Intergenic	Intergenic	292031	NM_175939	244486	Mm.67684	NM_175939	ENSMUSG00000046258	Adam29	-	a disintegrin and metallopeptidase domain 29	protein-coding	6.030	10.350	3.349	6.415	2.686	1.095	4.041	6.454	4.172	7.373	3.613	2.150	6.719	6.004	7.349	9.133	4.603	7.184	5.034	2.382	1.756	5.980	4.401	3.182	8.098
4445	chr13	118021880	118026058	+	0	NA	Intergenic	RMER17C-int|LTR|ERVK	-303958	NR_045508	71100	Mm.414841	NR_045508	ENSMUSG00000079048	4933413L06Rik	-	RIKEN cDNA 4933413L06 gene	ncRNA	5.540	1.495	0.993	4.022	3.996	2.881	3.564	3.956	3.215	4.251	2.744	0.793	5.205	7.877	4.094	5.530	4.575	4.424	4.544	3.100	2.494	3.327	5.258	4.756	4.825
7745	chr19	37507144	37517162	+	0	NA	Intergenic	ORR1A3|LTR|ERVL-MaLR	-38265	NM_175353	107371	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	5.852	1.703	0.508	2.712	1.455	1.103	11.964	7.451	2.797	4.286	0.898	1.176	5.487	6.580	7.016	6.089	6.401	5.722	0.654	0.473	0.865	0.919	0.556	0.634	10.283
3851	chr13	14179919	14186169	+	0	NA	intron (NM_198122, intron 17 of 22)	intron (NM_198122, intron 17 of 22)	119260	NM_198122	94246	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	3.138	0.555	0.686	2.826	4.808	3.593	2.719	2.202	3.095	3.269	0.765	0.835	3.888	nan	2.670	3.457	nan	3.584	0.768	0.779	0.828	0.542	0.890	0.888	nan
9197	chr3	27872763	27876361	+	0	NA	intron (NM_001164437, intron 3 of 3)	intron (NM_001164437, intron 3 of 3)	21806	NM_001164437	208613	Mm.59189	NM_001164437	ENSMUSG00000043164	Tmem212	E030011K20Rik|Gm564	transmembrane protein 212	protein-coding	1.159	0.722	0.386	nan	1.027	0.410	nan	0.591	nan	0.872	0.927	0.688	0.411	0.582	nan	0.979	0.975	nan	3.753	2.996	1.739	4.812	2.822	2.223	0.849
15130	chr9	58094693	58098379	+	0	NA	intron (NM_001311085, intron 2 of 18)	intron (NM_001311085, intron 2 of 18)	5689	NM_029212	382077	Mm.335193	NM_029212	ENSMUSG00000037716	Ccdc33	4930535E21Rik|Gm1117|Tzip1	coiled-coil domain containing 33	protein-coding	7.393	8.922	4.646	8.028	5.819	4.231	5.600	6.946	5.803	5.852	8.495	5.767	5.410	7.954	6.550	7.507	5.013	7.347	6.192	5.058	5.075	5.326	5.486	4.907	8.844
10144	chr4	62006977	62016155	+	0	NA	Intergenic	Intergenic	42551	NM_001012323	381530	Mm.460005	NM_001012323	ENSMUSG00000078672	Mup20	Gm12560|Mup24|OTTMUSG00000007485|darcin	major urinary protein 20	protein-coding	5.105	nan	1.562	4.969	3.114	1.764	nan	4.009	4.781	4.398	1.616	1.352	5.700	6.373	4.538	5.543	4.770	6.056	nan	1.243	1.166	1.756	1.546	1.335	4.159
844	chr1	167696264	167702280	+	0	NA	intron (NM_033652, intron 2 of 7)	intron (NM_033652, intron 2 of 7)	9714	NM_033652	110648	Mm.330081	NM_033652	ENSMUSG00000026686	Lmx1a	Lmx1.1|dr|dreher|sst	LIM homeobox transcription factor 1 alpha	protein-coding	10.025	1.218	0.918	nan	4.714	2.338	3.514	7.097	nan	4.614	1.518	1.192	nan	7.155	nan	7.753	5.687	4.576	0.771	1.622	1.333	nan	nan	0.487	nan
12155	chr6	34851832	34861274	+	0	NA	intron (NM_178630, intron 18 of 18)	intron (NM_178630, intron 18 of 18)	-6593	NM_197986	68487	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	5.850	4.001	1.795	4.157	2.640	1.212	4.939	3.425	3.451	4.722	1.268	0.843	6.616	5.714	6.652	10.044	6.396	5.038	nan	1.139	1.116	nan	nan	0.925	8.266
4447	chr13	118746687	118747972	+	0	NA	intron (NM_008002, intron 1 of 2)	Lx9|LINE|L1	32630	NM_008002	14165	Mm.317323	NM_008002	ENSMUSG00000021732	Fgf10	AEY17|BB213776|Fgf-10|Gsfaey17	fibroblast growth factor 10	protein-coding	0.268	0.560	0.584	0.298	0.149	0.098	0.225	0.153	0.103	0.371	0.011	0.238	0.173	0.258	0.226	0.312	0.269	0.276	7.654	4.852	5.157	1.461	9.506	7.231	nan
10862	chr4	144788979	144792171	+	0	NA	Intergenic	Intergenic	-3992	NM_001126316	329993	Mm.297407	NM_001126316	ENSMUSG00000078504	Gm438	-	predicted gene 438	protein-coding	10.065	2.366	1.390	4.236	5.173	2.641	8.055	6.460	4.686	5.252	2.202	1.203	7.475	10.316	9.479	7.300	4.933	6.542	1.648	1.749	0.948	1.189	1.557	1.059	8.975
4552	chr14	26446360	26448564	+	0	NA	intron (NM_001347494, intron 10 of 19)	B4A|SINE|B4	87162	NM_032008	83997	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	1.383	3.304	0.738	2.464	0.833	0.655	1.183	3.427	1.174	1.647	6.095	2.512	1.018	1.810	1.875	1.733	nan	2.775	1.283	0.843	0.601	nan	0.695	0.253	2.402
5767	chr16	8724395	8730641	+	0	NA	intron (NM_001003918, intron 1 of 30)	ORR1D1|LTR|ERVL-MaLR	10824	NM_001003918	252870	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	nan	8.101	6.032	0.943	1.397	0.811	nan	1.653	1.407	0.956	1.052	1.076	0.744	1.065	0.830	1.317	1.081	1.328	1.417	1.228	1.060	0.991	1.714	1.129	0.923
272	chr1	69513082	69517146	+	0	NA	Intergenic	Intergenic	170846	NM_011770	22779	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	1.435	0.617	0.498	0.356	0.118	0.031	0.968	3.661	0.802	0.613	6.463	3.128	1.446	nan	2.207	nan	nan	nan	0.514	0.400	0.311	1.170	0.380	0.246	0.351
9583	chr3	97846505	97851716	+	0	NA	intron (NM_001039376, intron 1 of 46)	intron (NM_001039376, intron 1 of 46)	39597	NM_001289702	83679	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	3.076	2.812	1.586	3.617	2.879	1.260	4.629	4.219	3.195	2.986	nan	2.068	4.841	4.674	3.987	5.408	4.306	4.403	1.912	1.295	0.777	1.285	1.598	0.952	2.949
4930	chr14	102271580	102272387	+	0	NA	Intergenic	Lx3_Mus|LINE|L1	431360	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	3.608	1.065	0.847	2.751	2.281	1.237	2.307	3.641	3.496	3.058	2.362	2.602	3.396	4.119	5.049	5.571	2.570	4.440	1.271	0.691	0.303	0.867	1.571	0.782	4.033
14458	chr8	93363631	93365457	+	0	NA	Intergenic	Intergenic	-27335	NM_021456	12623	Mm.22720	NM_021456	ENSMUSG00000057074	Ces1g	Ces-1|Ces1|Ses-1	carboxylesterase 1G	protein-coding	3.535	11.247	6.200	2.528	2.909	0.941	2.262	6.021	1.659	1.974	5.831	2.632	2.069	3.488	1.974	1.727	1.425	1.516	0.722	2.026	1.842	1.738	0.780	0.975	2.070
15278	chr9	71540169	71547021	+	0	NA	intron (NM_001033208, intron 10 of 12)	intron (NM_001033208, intron 10 of 12)	48765	NM_001033208	102371	Mm.27585	NM_001033208	ENSMUSG00000041361	Myzap	AA407270|AV006038|Gcom1|Gm640|Grinl1a7|Myozap	myocardial zonula adherens protein	protein-coding	5.068	0.745	0.474	2.050	3.754	2.131	5.456	6.880	4.359	4.312	5.640	4.259	4.225	6.028	nan	4.518	2.493	4.642	nan	1.141	0.818	0.565	0.816	0.578	4.489
2518	chr11	78896454	78899126	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	-22997	NM_010927	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	5.795	2.296	1.243	3.358	3.108	2.419	nan	3.838	2.928	3.426	3.086	1.227	3.295	4.501	3.364	nan	3.076	nan	0.766	1.486	nan	1.348	0.888	0.494	4.155
15369	chr9	88219049	88225868	+	0	NA	Intergenic	Intergenic	-105151	NM_011851	23959	Mm.244235	NM_011851	ENSMUSG00000032420	Nt5e	2210401F01Rik|5'-NT|AI447961|CD73|NT|Nt5|eNT	5' nucleotidase, ecto	protein-coding	5.158	8.092	4.249	3.064	4.577	2.670	4.986	7.189	6.699	7.183	7.569	3.032	6.618	6.716	5.038	7.013	4.224	7.042	0.881	0.782	0.706	0.837	0.875	0.831	7.985
8244	chr2	52326217	52333727	+	0	NA	intron (NM_010889, intron 4 of 156)	intron (NM_010889, intron 4 of 156)	8826	NM_010889	17996	Mm.389247	NM_010889	ENSMUSG00000026950	Neb	AI595938	nebulin	protein-coding	3.938	1.901	1.199	2.816	2.417	1.545	3.886	5.034	4.036	4.987	0.600	0.723	4.880	4.565	3.931	5.033	4.862	4.509	2.795	2.088	1.567	3.579	1.264	1.286	4.922
9705	chr3	108657538	108662380	+	0	NA	intron (NM_001177771, intron 2 of 12)	B4A|SINE|B4	5969	NM_001177770	229725	Mm.214545	NM_145543	ENSMUSG00000027884	Clcc1	Mclc	chloride channel CLIC-like 1	protein-coding	6.684	4.685	1.757	5.681	4.906	3.871	4.651	3.783	3.201	4.339	2.982	1.158	3.836	6.537	3.853	4.561	4.011	4.772	1.558	1.840	1.444	2.253	1.310	1.007	4.840
2376	chr11	69570931	69573685	+	0	NA	intron (NM_144824, intron 3 of 9)	B3|SINE|B2	7016	NM_144824	216853	Mm.31586	NM_144824	ENSMUSG00000041346	Wrap53	BC021790|Wdr79	WD repeat containing, antisense to Trp53	protein-coding	10.348	12.197	4.734	7.410	6.730	3.394	7.580	9.144	5.550	7.740	5.982	3.161	7.063	11.370	8.849	10.232	7.807	7.619	6.886	6.732	3.067	6.666	nan	3.611	8.987
6010	chr16	32735275	32747395	+	0	NA	intron (NM_080457, intron 1 of 26)	intron (NM_080457, intron 1 of 26)	5449	NM_080457	140474	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding	2.347	1.020	0.576	1.740	2.057	0.875	4.827	7.818	2.612	2.317	1.559	1.985	6.397	4.703	4.348	5.951	4.107	3.401	0.954	0.685	0.422	0.643	nan	0.600	2.971
7687	chr19	29491926	29493681	+	0	NA	Intergenic	Intergenic	29184	NR_015567	77779	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	6.819	5.699	3.486	nan	2.325	0.850	6.270	2.972	2.850	3.269	nan	0.961	1.916	4.419	5.588	3.635	4.684	3.097	nan	2.200	1.363	1.166	nan	0.666	4.080
13416	chr7	95373891	95376101	+	0	NA	Intergenic	Intergenic	-796248	NM_001310762	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	6.635	4.815	4.509	2.656	4.906	2.887	6.545	4.221	3.700	4.082	2.958	1.818	4.860	6.498	4.787	nan	6.255	5.136	nan	2.627	1.792	0.461	1.154	0.712	2.601
3100	chr11	120011376	120013702	+	0	NA	intron (NM_001198787, intron 10 of 13)	intron (NM_001198787, intron 10 of 13)	-2228	NR_037225	100526518		NR_037225	ENSMUSG00000105524	Mir3065	mir-3065|mmu-mir-3065	microRNA 3065	ncRNA	6.872	7.162	2.445	6.141	4.149	1.395	6.018	8.303	4.436	6.465	3.982	1.707	6.164	8.617	6.463	8.920	5.725	nan	3.646	nan	1.715	6.184	3.149	1.833	8.279
5263	chr15	64142851	64145063	+	0	NA	intron (NM_010026, intron 14 of 30)	intron (NM_010026, intron 14 of 30)	-83509	NM_144846	223601	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	nan	16.919	5.114	9.244	2.387	3.183	7.446	9.355	5.025	8.645	4.738	4.650	6.360	6.006	8.376	6.255	4.490	7.111	6.245	1.794	3.188	6.945	2.407	3.199	11.115
6172	chr16	85800243	85805658	+	0	NA	5' UTR (NM_009621, exon 1 of 9)	5' UTR (NM_009621, exon 1 of 9)	163	NM_009621	11504	Mm.1421	NM_009621	ENSMUSG00000022893	Adamts1	ADAM-TS1|ADAMTS|ADAMTS-1|C3-C5|METH-1|METH1	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1	protein-coding	6.820	nan	0.528	5.833	3.248	1.315	1.854	5.328	2.221	3.148	1.272	1.660	2.670	4.070	5.721	5.281	4.578	nan	0.809	0.788	0.883	nan	0.562	0.724	12.353
7750	chr19	38059718	38063679	+	0	NA	intron (NM_028760, intron 4 of 9)	intron (NM_028760, intron 4 of 9)	6656	NM_001164362	74107	Mm.9916	NM_028293	ENSMUSG00000024989	Cep55	1200008O12Rik|2700032M20Rik	centrosomal protein 55	protein-coding	2.199	1.229	0.514	1.075	1.394	0.868	1.189	nan	2.066	1.693	6.741	2.502	1.236	1.846	1.197	1.517	nan	1.867	0.430	0.672	0.408	1.630	0.634	0.372	1.525
11705	chr5	124196861	124200213	+	0	NA	intron (NM_011256, intron 2 of 24)	MLT1F|LTR|ERVL-MaLR	-11355	NM_001289472	19679	Mm.44261	NM_011256	ENSMUSG00000029406	Pitpnm2	NIR3|RDGBA2|Rdgb2|mKIAA1457	phosphatidylinositol transfer protein, membrane-associated 2	protein-coding	7.373	7.748	5.295	6.175	6.031	4.152	7.118	5.930	5.133	5.576	5.726	3.945	4.955	7.857	6.475	6.463	nan	nan	nan	4.676	4.141	5.169	6.193	5.433	5.908
3787	chr12	117518364	117521367	+	0	NA	intron (NM_175930, intron 2 of 27)	intron (NM_175930, intron 2 of 27)	3386	NM_175930	217944	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	12.490	11.395	3.140	12.269	4.282	2.679	9.229	9.123	6.116	13.755	8.169	4.023	9.730	12.036	10.135	12.689	8.581	10.232	4.989	3.187	3.060	6.100	3.507	4.414	20.128
1627	chr10	94451953	94456993	+	0	NA	Intergenic	ORR1A4|LTR|ERVL-MaLR	-60384	NM_172051	319880	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	AW488095|C630016B22Rik|C88213|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	9.292	1.209	0.715	5.227	5.690	2.649	6.617	4.555	6.278	8.596	nan	1.287	5.943	9.837	7.818	7.695	6.488	8.348	nan	1.158	1.192	nan	0.884	0.569	9.985
3562	chr12	86154665	86156632	+	0	NA	intron (NM_001199843, intron 5 of 8)	intron (NM_001199843, intron 5 of 8)	-13693	NR_046081	328136	Mm.312050	NR_046081	ENSMUSG00000097543	Gm805	-	predicted gene 805	ncRNA	3.110	1.009	0.399	2.909	0.533	0.187	1.919	2.129	3.188	3.867	1.001	0.766	3.784	4.795	3.350	7.268	3.807	4.466	0.550	0.525	0.436	1.028	0.706	0.464	8.056
11806	chr5	136408342	136411529	+	0	NA	intron (NM_001291239, intron 2 of 22)	(TCTCTG)n|Simple_repeat|Simple_repeat	-34132	NR_030500	723975		NR_030500	ENSMUSG00000106479	Mir721	Mirn721|miRY|mir-721|mmu-mir-721	microRNA 721	ncRNA	8.007	8.465	4.418	7.549	4.372	2.665	7.737	7.496	4.845	7.364	6.212	3.648	5.348	7.707	7.616	7.697	6.806	5.953	6.739	4.435	2.942	5.807	5.023	4.431	8.092
6145	chr16	58507058	58515181	+	0	NA	intron (NM_018784, intron 1 of 10)	intron (NM_018784, intron 1 of 10)	12193	NM_018784	54613	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	5.785	2.659	1.878	5.036	4.634	2.827	4.025	3.372	2.907	2.910	1.941	1.630	2.764	5.033	6.290	nan	5.548	4.203	nan	4.189	3.706	4.047	4.229	4.661	4.837
11540	chr5	108394318	108396407	+	0	NA	intron (NM_008806, intron 1 of 21)	B1_Mm|SINE|Alu	6989	NM_008806	18587	Mm.1372	NM_008806	ENSMUSG00000029491	Pde6b	Pdeb|r|rd|rd-1|rd1|rd10	phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide	protein-coding	4.984	4.279	3.117	4.578	2.967	2.342	nan	3.212	2.822	3.284	3.708	1.900	1.589	3.324	2.637	3.527	2.621	3.419	nan	1.774	1.467	0.895	0.898	1.046	3.350
700	chr1	138521058	138523262	+	0	NA	intron (NM_001311148, intron 5 of 7)	intron (NM_001311148, intron 5 of 7)	97597	NM_021605	59125	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	11.114	11.089	4.499	9.005	8.395	6.450	11.580	8.669	5.436	13.886	5.700	4.033	7.665	10.860	7.061	11.678	8.803	7.845	5.202	3.751	5.651	4.828	4.481	7.504	14.338
1019	chr1	191690190	191692338	+	0	NA	Intergenic	RLTR11B|LTR|ERVK	-26760	NM_172266	226856	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	10.133	3.369	1.291	7.935	5.541	2.497	7.924	7.127	4.506	5.095	3.946	3.695	6.565	7.344	6.902	9.647	6.156	8.461	2.184	2.132	0.980	3.512	2.131	1.335	8.670
14506	chr8	97900256	97902649	+	0	NA	Intergenic	Intergenic	-1110435	NR_110579	100873092	Mm.414599	NR_110579	ENSMUSG00000089819	Gm15679	OTTMUSG00000025218	predicted gene 15679	ncRNA	8.466	0.680	0.489	7.435	3.391	1.042	4.021	8.175	5.381	6.832	5.035	2.545	7.054	4.864	7.625	12.533	7.393	9.311	1.207	1.332	0.921	2.916	0.924	0.807	14.379
11397	chr5	89148976	89151678	+	0	NA	intron (NM_001197147, intron 13 of 25)	intron (NM_001197147, intron 13 of 25)	263067	NM_018760	54403	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	9.769	9.444	5.157	8.236	7.553	5.595	12.847	9.466	5.245	10.780	6.980	3.348	5.879	11.069	8.322	9.053	9.313	6.371	5.833	4.901	5.389	5.022	7.741	6.834	12.511
3369	chr12	60166545	60169114	+	0	NA	Intergenic	Intergenic	-948346	NM_001033156	70611	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	12.059	nan	4.274	9.800	3.835	2.058	9.269	7.507	6.150	8.758	6.794	4.078	8.982	9.845	nan	11.341	8.302	10.544	5.393	2.636	2.353	6.492	3.082	3.219	16.781
6274	chr16	97735419	97737542	+	0	NA	Intergenic	Intergenic	27275	NM_023663	72388	Mm.35290	NM_023663	ENSMUSG00000005251	Ripk4	2310069J12Rik|AI552420|ANKK2|Ankrd3|DIk|PKK|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding	5.161	1.109	0.599	1.501	1.430	0.724	4.587	4.465	2.411	3.172	3.008	2.102	5.312	4.870	3.920	5.979	3.138	4.520	nan	0.929	0.411	2.141	1.333	1.036	5.230
15077	chr9	50693130	50695415	+	0	NA	intron (NM_178118, intron 6 of 19)	Lx2B|LINE|L1	33712	NM_178118	330938	Mm.82598	NM_178118	ENSMUSG00000032064	Dixdc1	4930563F16Rik|BC048182|Ccd1|Ccd1Aalpha1L|Ccd1Abeta1L|Ccd1BalphaL|Ccd1BbetaL|Ccd1CL|mKIAA1735	DIX domain containing 1	protein-coding	2.671	2.333	0.657	4.090	1.918	0.768	1.737	4.406	2.014	2.966	4.301	2.164	1.678	3.444	3.300	2.591	1.857	1.878	5.369	5.562	1.934	11.990	6.135	3.442	3.792
13468	chr7	105669846	105672378	+	0	NA	Intergenic	(TCTCCC)n|Simple_repeat|Simple_repeat	30572	NM_019502	14356	Mm.220330	NM_019502	ENSMUSG00000089847	Timm10b	Fxc1|Tim10b|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding	2.965	2.646	1.012	6.560	1.317	0.600	0.778	1.168	1.498	1.807	0.883	0.515	0.656	nan	1.411	1.761	0.831	2.686	nan	0.799	0.468	2.460	0.387	0.274	2.875
12430	chr6	89409584	89414626	+	0	NA	intron (NM_025351, intron 6 of 7)	CT-rich|Low_complexity|Low_complexity	-49492	NM_008881	18844	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	2.550	1.025	0.529	2.867	2.506	1.170	3.536	3.426	3.098	3.233	4.315	1.404	4.191	5.996	4.339	5.904	2.430	5.200	nan	0.684	0.379	1.637	0.959	0.521	2.978
4953	chr14	119041742	119042931	+	0	NA	intron (NM_001081252, intron 21 of 38)	MER3|DNA|hAT-Charlie	57098	NM_001081252	66435	Mm.213406	NM_025561	ENSMUSG00000042104	Uggt2	1810064L21Rik|3110001A05Rik|3110027P15Rik|A230065J02Rik|AW047562|Ugcgl2	UDP-glucose glycoprotein glucosyltransferase 2	protein-coding	2.899	0.502	0.230	2.113	0.854	0.207	3.189	4.754	2.829	2.207	2.223	2.569	3.413	5.200	3.831	5.141	2.310	3.760	0.382	0.143	0.515	0.344	0.517	0.201	6.412
5342	chr15	75750324	75755637	+	0	NA	Intergenic	Intergenic	-5058	NM_194350	378435	Mm.309589	NM_194350	ENSMUSG00000047591	Mafa	RIPE3b1	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian)	protein-coding	5.162	3.669	2.332	3.570	2.709	1.806	5.867	9.086	2.961	nan	nan	1.767	6.474	6.491	5.812	5.809	6.904	4.211	3.165	2.934	2.135	3.231	2.446	2.237	5.670
7614	chr19	18828548	18829919	+	0	NA	intron (NM_153417, intron 21 of 38)	intron (NM_153417, intron 21 of 38)	79250	NM_153417	225997	Mm.215171	NM_153417	ENSMUSG00000024727	Trpm6	CHAK2|TRPM6/CHAK2	transient receptor potential cation channel, subfamily M, member 6	protein-coding	3.273	0.634	0.380	3.317	1.821	1.066	4.142	0.864	4.191	3.212	0.688	0.442	5.313	3.963	5.032	6.415	4.037	6.580	0.306	0.188	0.243	0.562	0.428	0.372	6.279
6044	chr16	34923121	34938901	+	0	NA	intron (NM_139300, intron 17 of 31)	intron (NM_139300, intron 17 of 31)	8318	NR_040536	76649	Mm.420532	NR_040536	ENSMUSG00000100593	1700119H24Rik	-	RIKEN cDNA 1700119H24 gene	ncRNA	6.994	1.944	0.604	6.224	3.884	1.976	4.647	3.795	3.600	3.919	0.927	0.839	6.866	8.093	5.183	nan	5.009	8.632	0.704	0.879	0.647	0.731	0.539	0.344	11.688
8028	chr2	26084688	26087894	+	0	NA	intron (NM_026495, intron 2 of 5)	intron (NM_026495, intron 2 of 5)	6105	NM_001037098	67991	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	2.473	1.254	0.564	0.700	0.545	0.193	1.093	1.488	nan	1.002	7.053	0.957	1.320	1.065	1.270	1.725	2.029	1.175	0.714	0.471	0.279	1.007	0.328	0.324	2.803
9149	chr3	14956529	14959661	+	0	NA	Intergenic	Intergenic	-13106	NR_040549	77127	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	3.773	nan	0.635	2.667	2.045	0.852	3.440	3.343	3.095	2.820	3.124	1.123	3.828	3.287	3.988	4.643	4.013	5.294	0.655	0.686	0.391	0.295	0.656	0.211	3.703
14376	chr8	82841599	82850845	+	0	NA	Intergenic	Intergenic	-17134	NM_177378	330812	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	5.936	nan	0.485	3.445	2.427	1.481	nan	4.805	nan	4.038	0.961	0.716	5.215	5.565	4.852	6.686	5.734	5.129	0.531	0.973	0.564	nan	0.516	0.446	nan
10656	chr4	133440910	133444965	+	0	NA	Intergenic	Intergenic	-37196	NM_175307	100342	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	5.172	4.502	1.033	9.365	2.765	1.201	6.682	7.944	3.878	6.882	4.853	2.955	5.354	7.648	8.577	9.921	3.624	7.546	4.367	1.786	2.069	7.937	nan	2.270	12.144
3638	chr12	101513584	101517773	+	0	NA	intron (NM_173023, intron 14 of 26)	L1_Mus3|LINE|L1	111005	NM_173023	271036	Mm.84218	NM_173023	ENSMUSG00000047014	Catsperb	4931410B03|4932415G16Rik	catsper channel auxiliary subunit beta	protein-coding	2.529	1.994	0.998	2.050	0.933	0.674	0.939	0.927	1.245	1.325	0.606	0.709	0.530	1.296	1.812	2.188	1.983	nan	2.056	1.078	0.886	3.657	1.357	1.018	nan
14150	chr8	36239766	36241345	+	0	NA	intron (NM_001081150, intron 1 of 11)	Lx3_Mus|LINE|L1	8961	NM_001081150	244421	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	2.936	0.511	0.309	1.339	1.916	0.797	2.122	4.090	2.844	2.137	2.014	1.267	3.744	5.395	4.199	4.657	3.498	3.867	2.471	0.557	0.233	2.073	0.965	0.739	2.474
11061	chr5	23067345	23069231	+	0	NA	intron (NM_001081231, intron 1 of 3)	intron (NM_001081231, intron 1 of 3)	-321404	NR_027362	330052	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	4.889	0.569	0.299	3.366	1.767	0.387	4.617	3.588	4.327	3.851	3.247	1.783	5.419	5.497	6.035	6.195	4.932	5.498	2.895	1.158	0.657	4.267	1.423	0.825	3.483
2081	chr11	33851337	33852744	+	0	NA	intron (NM_001190886, intron 1 of 7)	intron (NM_001190886, intron 1 of 7)	-8455	NM_001290690	70357	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	1.585	1.021	0.298	0.334	0.136	0.080	0.533	1.437	2.791	3.503	0.443	0.070	2.621	4.074	3.288	1.963	1.717	2.426	7.864	2.014	1.365	8.376	2.909	1.624	1.665
14795	chr8	128377474	128381014	+	0	NA	intron (NM_008737, intron 2 of 16)	MTD|LTR|ERVL-MaLR	20003	NR_035436	100316680		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0.349	nan	0.478	nan	0.132	0.207	nan	nan	0.469	0.377	0.352	0.374	0.272	0.456	nan	0.824	0.669	nan	nan	0.819	0.718	nan	0.927	nan	nan
606	chr1	133557690	133558816	+	0	NA	Intergenic	L1_Mus4|LINE|L1	52027	NM_009227	20643	Mm.249110	NM_009227	ENSMUSG00000090553	Snrpe	AL022645|C76690|SME	small nuclear ribonucleoprotein E	protein-coding	5.508	1.712	1.011	nan	0.467	0.326	3.412	5.214	2.598	1.902	0.498	1.755	3.848	3.087	2.624	5.892	4.508	1.027	0.691	0.574	0.292	0.387	0.366	0.093	3.111
15654	chrX	7002814	7009201	+	0	NA	intron (NM_183015, intron 7 of 13)	intron (NM_183015, intron 7 of 13)	35612	NM_183015	209091	Mm.448624	NM_183015	ENSMUSG00000051592	Ccnb3	-	cyclin B3	protein-coding	3.028	0.607	0.210	1.839	1.292	1.060	3.058	2.837	2.528	2.400	1.073	0.544	3.574	3.325	5.071	5.295	3.016	3.692	1.029	0.422	0.222	1.040	0.572	0.365	3.802
11976	chr5	149519125	149522400	+	0	NA	intron (NR_045423, intron 1 of 4)	MTD|LTR|ERVL-MaLR	-7917	NM_029440	381693	Mm.136919	NM_029440	ENSMUSG00000029658	Wdr95	4930434E21Rik	WD40 repeat domain 95	protein-coding	3.886	1.670	0.925	3.773	2.158	0.975	4.147	3.629	3.875	3.918	1.510	1.527	3.803	5.289	4.884	4.457	2.715	3.976	1.457	1.064	0.702	1.487	1.039	0.705	3.852
8462	chr2	93264427	93269518	+	0	NA	intron (NM_183180, intron 2 of 9)	intron (NM_183180, intron 2 of 9)	67515	NM_183180	241556	Mm.274159	NM_183180	ENSMUSG00000027217	Tspan18	2610042G18Rik|6720430O15|BB226562	tetraspanin 18	protein-coding	nan	12.827	3.067	1.472	0.216	0.156	0.378	0.567	0.674	0.560	0.347	0.457	0.283	0.281	0.577	0.815	0.436	0.776	0.625	0.473	0.550	0.968	0.194	0.352	nan
4416	chr13	112581741	112601101	+	0	NA	Intergenic	Intergenic	-10759	NM_139299	218624	Mm.380801	NM_139299	ENSMUSG00000050377	Il31ra	CRL3|GLM-R|GPL|Glmr|NR10	interleukin 31 receptor A	protein-coding	6.516	nan	1.988	5.654	4.704	2.796	6.711	6.809	nan	nan	4.644	2.732	6.979	8.329	6.895	6.395	4.252	nan	2.846	1.609	1.556	nan	1.925	1.954	8.978
11109	chr5	31261760	31265314	+	0	NA	intron (NM_026298, intron 28 of 47)	(GGCTG)n|Simple_repeat|Simple_repeat	11831	NM_027221	69815	Mm.389609	NM_027221	ENSMUSG00000029149	Krtcap3	2010001C09Rik|AW321088|Kcp3	keratinocyte associated protein 3	protein-coding	7.245	6.517	2.253	8.429	5.465	3.570	4.597	8.770	4.813	5.881	3.883	2.294	4.421	8.221	5.141	5.540	4.203	5.063	2.808	2.211	2.204	3.992	2.316	2.760	6.398
1855	chr10	127471118	127474404	+	0	NA	intron (NM_027900, intron 12 of 23)	intron (NM_027900, intron 12 of 23)	-28956	NM_177707	237611	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	11.375	nan	4.905	12.625	7.403	4.040	8.063	8.671	7.959	10.406	8.701	5.437	9.254	10.780	11.106	11.553	8.058	11.415	7.514	4.384	4.514	8.163	nan	4.798	15.430
9223	chr3	32499849	32501227	+	0	NA	Intergenic	ORR1C2|LTR|ERVL-MaLR	-8569	NM_001195074	100502876	Mm.383358	NM_001195074	ENSMUSG00000091091	Kcnmb3	EG435726|Gm5707	potassium large conductance calcium-activated channel, subfamily M, beta member 3	protein-coding	1.465	1.611	0.334	2.013	0.988	0.392	3.912	1.181	1.728	1.805	4.024	0.603	2.845	3.428	2.255	1.679	1.084	2.188	0.496	0.188	0.236	0.412	0.252	0.115	2.198
432	chr1	91465428	91468247	+	0	NA	Intergenic	RSINE1|SINE|B4	-7509	NM_011066	18627	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	5.364	0.771	0.426	2.744	4.276	1.942	3.996	6.424	1.992	3.598	2.527	0.925	2.861	5.367	2.177	2.596	2.197	3.307	1.514	1.489	0.940	nan	1.639	1.220	3.305
15061	chr9	50218146	50225788	+	0	NA	Intergenic	Intergenic	11215	NR_131161	71873		NR_131161	ENSMUSG00000110916	2310003N18Rik	-	RIKEN cDNA 2310003N18 gene	ncRNA	5.601	0.601	0.376	1.818	3.448	2.134	4.202	3.754	3.942	5.728	3.693	1.997	3.369	6.370	nan	nan	2.587	3.069	1.012	0.578	0.753	nan	0.612	0.584	nan
13392	chr7	88202141	88204258	+	0	NA	Intergenic	Intergenic	-74886	NM_009982	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	2.192	0.693	0.273	3.220	3.347	2.498	6.449	3.039	2.063	2.853	0.556	0.532	2.546	4.638	3.359	4.060	1.944	4.337	0.806	0.857	0.663	nan	0.832	0.689	6.665
13442	chr7	99001437	99004323	+	0	NA	intron (NM_178635, intron 8 of 14)	L1M5|LINE|L1	138264	NM_178635	78610	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	1.912	0.241	0.440	1.116	1.607	0.562	3.431	1.638	2.108	2.710	0.316	0.334	3.190	4.619	3.030	2.156	2.320	3.019	nan	0.574	0.297	0.210	0.365	0.394	1.088
4235	chr13	69619540	69621569	+	0	NA	intron (NM_145354, intron 7 of 18)	intron (NM_145354, intron 7 of 18)	8538	NM_145354	28114	Mm.260009	NM_145354	ENSMUSG00000021595	Nsun2	D13Wsu123e|Misu	NOL1/NOP2/Sun domain family member 2	protein-coding	4.767	1.400	0.589	2.775	1.259	0.745	6.734	6.369	2.500	3.390	2.820	1.912	7.701	4.763	4.501	6.976	3.102	5.764	3.360	1.585	1.149	2.710	2.360	1.908	5.184
12471	chr6	92020773	92022095	+	0	NA	intron (NM_172731, intron 2 of 20)	intron (NM_172731, intron 2 of 20)	42469	NM_172731	232237	Mm.295740	NM_172731	ENSMUSG00000034037	Fgd5	C330025N11Rik|ZFYVE23|mFLJ00274	FYVE, RhoGEF and PH domain containing 5	protein-coding	2.186	0.771	0.100	2.157	2.309	1.380	2.014	2.167	1.840	1.887	0.618	0.503	3.059	5.585	3.243	4.246	2.279	3.047	nan	0.452	0.463	0.536	0.721	0.354	2.904
5349	chr15	75943301	75950748	+	0	NA	intron (NM_030199, intron 1 of 1)	intron (NM_030199, intron 1 of 1)	6072	NM_030199	78834	Mm.273264	NM_030199	ENSMUSG00000050846	Zfp623	2610029D06Rik|AI847036	zinc finger protein 623	protein-coding	5.185	nan	0.577	3.775	4.595	2.225	4.017	9.596	3.762	4.991	nan	1.515	5.641	8.328	5.026	5.064	3.476	5.651	4.218	2.629	1.944	4.137	3.332	3.331	7.762
8485	chr2	102721706	102725423	+	0	NA	intron (NM_001077515, intron 1 of 10)	RLTR20B1|LTR|ERVK	17126	NM_001077515	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	7.148	2.230	0.958	2.998	3.017	1.443	3.400	4.577	3.097	3.595	5.916	2.828	5.291	3.767	3.189	5.049	3.578	4.021	1.162	1.267	0.988	0.957	0.739	0.469	6.020
12558	chr6	108274880	108277415	+	0	NA	intron (NM_010585, intron 4 of 61)	intron (NM_010585, intron 4 of 61)	63051	NM_010585	16438	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|ENSMUSG00000072853|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	1.757	10.262	6.370	2.555	0.975	0.436	1.820	1.404	1.223	1.303	0.365	0.877	1.391	1.398	2.284	2.900	1.519	2.059	nan	1.090	0.804	1.846	0.794	0.375	nan
5713	chr15	101920887	101923815	+	0	NA	intron (NM_008475, intron 2 of 8)	intron (NM_008475, intron 2 of 8)	2384	NM_008475	16682	Mm.46425	NM_008475	ENSMUSG00000059668	Krt4	AW108092|K4|Krt-2.4|Krt2-4	keratin 4	protein-coding	3.637	2.329	0.949	2.419	1.757	0.927	3.276	7.843	1.965	2.639	1.928	1.475	5.910	5.930	4.850	3.606	4.472	2.809	1.719	0.607	0.460	0.912	0.599	0.422	2.708
9520	chr3	94816963	94823790	+	0	NA	Intergenic	B2_Mm1t|SINE|B2	-17191	NM_001165948	229584	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	6.827	6.693	2.670	5.476	5.052	3.299	10.812	6.468	3.887	6.257	nan	2.396	8.770	9.507	8.154	9.174	7.375	7.941	3.460	2.029	2.442	4.910	2.437	2.661	10.980
10256	chr4	88712505	88719396	+	0	NA	Intergenic	Intergenic	6558	NM_172871	242521	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|ENSMUSG00000070923|mKIAA1354	kelch-like 9	protein-coding	1.196	nan	0.434	0.631	2.154	1.055	1.788	nan	nan	1.430	8.079	3.867	1.472	1.938	1.463	1.304	1.029	nan	0.705	nan	0.482	0.576	0.654	0.498	nan
13539	chr7	111316755	111319819	+	0	NA	Intergenic	L1MB3|LINE|L1	-195612	NR_015573	75479	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	0.847	1.015	0.552	0.715	0.217	0.222	1.573	1.423	0.601	0.735	5.336	0.924	0.439	1.479	0.845	nan	0.599	nan	nan	0.279	0.160	0.214	0.380	0.245	0.531
5217	chr15	59247097	59248734	+	0	NA	Intergenic	Intergenic	-59033	NR_045613	100416830	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	4.290	1.659	1.423	2.581	2.563	1.534	3.866	4.396	2.825	2.819	3.346	2.644	4.255	3.914	3.037	nan	3.702	4.877	1.069	1.031	1.129	1.216	1.220	1.007	1.971
708	chr1	140022979	140026339	+	0	NA	Intergenic	L1Md_T|LINE|L1	158752	NM_009888	12628	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	1.567	5.793	3.985	nan	0.585	0.257	0.522	0.518	1.260	0.948	0.538	0.297	1.074	nan	1.074	nan	1.402	1.376	0.535	0.432	0.316	0.399	0.387	0.165	nan
2415	chr11	70832008	70834140	+	0	NA	Intergenic	B2_Mm1a|SINE|B2	-11687	NM_001291143	54189	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	8.120	11.887	3.608	7.997	3.042	1.295	7.799	6.434	5.056	7.040	5.012	2.744	6.269	7.895	7.333	9.614	5.281	8.124	4.744	2.372	1.769	5.543	nan	2.981	10.158
11146	chr5	33677367	33680522	+	0	NA	Intergenic	Intergenic	20816	NM_001040435	21335	Mm.379024	NM_011524	ENSMUSG00000037313	Tacc3	Aint|C86661|Eric1	transforming, acidic coiled-coil containing protein 3	protein-coding	7.576	6.220	2.399	6.949	4.903	4.333	8.361	6.981	4.038	7.029	5.744	3.420	4.708	8.370	8.074	8.839	nan	6.928	3.843	1.939	3.008	4.846	2.837	4.076	11.069
13430	chr7	97127670	97130484	+	0	NA	intron (NM_001162477, intron 1 of 9)	intron (NM_001162477, intron 1 of 9)	47326	NM_010248	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	10.608	14.075	4.416	11.555	6.883	3.196	8.969	11.487	7.500	11.496	9.426	5.353	9.558	10.809	11.266	11.061	9.280	9.824	7.386	3.624	3.119	6.003	3.912	4.539	13.572
3286	chr12	36394314	36403089	+	0	NA	intron (NM_001289502, intron 2 of 8)	L1VL4|LINE|L1	16554	NM_001289503	75847	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding	5.734	nan	0.594	1.921	1.234	0.824	6.025	4.340	nan	3.812	5.476	5.621	4.697	3.710	5.614	4.225	3.423	6.008	nan	0.618	0.321	0.428	0.306	0.289	3.276
4764	chr14	65307170	65308863	+	0	NA	intron (NM_015795, intron 7 of 7)	intron (NM_015795, intron 7 of 7)	41315	NM_015795	50759	Mm.65308	NM_015795	ENSMUSG00000034532	Fbxo16	4932435C24Rik|Fbx16	F-box protein 16	protein-coding	3.457	5.062	2.953	4.412	1.811	1.229	1.461	5.299	2.638	2.154	1.085	1.531	2.656	2.648	2.975	2.083	0.925	2.534	2.405	nan	1.099	2.978	1.259	1.164	2.178
12585	chr6	113275697	113278446	+	0	NA	intron (NM_026849, intron 17 of 18)	intron (NM_026849, intron 17 of 18)	-5236	NM_170673	211232	Mm.65597	NM_170673	ENSMUSG00000030270	Cpne9	A730016F12Rik|mKIAA4217	copine family member IX	protein-coding	6.605	6.907	4.151	6.346	5.706	4.702	8.409	7.765	4.636	4.910	4.307	3.421	5.550	8.473	7.778	8.569	6.693	5.604	3.221	2.439	3.925	3.390	nan	4.668	8.106
1656	chr10	95643564	95645601	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-80415	NM_027722	71207	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	7.071	4.187	1.818	4.337	2.713	1.211	3.438	5.398	3.818	4.146	4.546	2.130	2.890	5.127	4.269	3.414	2.196	4.684	nan	1.730	1.143	nan	1.379	0.939	3.124
15360	chr9	85219666	85221938	+	0	NA	Intergenic	Intergenic	106322	NM_001160378	212943	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	6.467	7.099	2.070	8.719	2.930	2.165	5.123	7.279	3.722	7.317	8.136	4.567	4.915	5.164	6.068	5.062	2.737	4.805	5.765	1.917	3.563	5.920	4.114	5.406	9.965
15269	chr9	70722316	70724160	+	0	NA	intron (NM_007399, intron 4 of 15)	intron (NM_007399, intron 4 of 15)	44256	NM_007399	11487	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	2.563	1.208	0.133	2.797	1.167	1.031	1.114	2.661	3.503	3.124	2.249	1.559	2.334	3.710	2.382	3.041	1.311	4.386	3.714	1.159	0.884	6.489	1.929	1.176	3.586
14243	chr8	63105237	63114204	+	0	NA	intron (NM_023689, intron 3 of 11)	intron (NM_023689, intron 3 of 11)	158375	NM_023689	72902	Mm.334552	NM_023689	ENSMUSG00000054162	Spock3	2900045C01Rik|AI428471|mKIAA4039	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	protein-coding	4.629	1.102	0.543	1.864	1.268	0.693	3.882	5.843	3.259	3.775	2.549	1.189	4.341	4.652	5.527	8.334	7.322	4.670	nan	1.017	0.720	1.586	0.670	0.783	6.913
9431	chr3	87834104	87835573	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-11917	NM_001025571	27371	Mm.86361	NM_021309	ENSMUSG00000028071	Sh2d2a	Lad|Ribp|Tsad	SH2 domain containing 2A	protein-coding	1.344	0.792	0.148	4.224	1.616	1.228	1.972	1.772	1.260	1.856	1.004	0.483	1.151	3.564	2.144	2.845	1.307	3.347	nan	0.813	0.791	1.374	1.334	0.944	2.084
856	chr1	170216165	170222546	+	0	NA	Intergenic	Intergenic	-3962	NM_010633	16589	Mm.209150	NM_010633	ENSMUSG00000026667	Uhmk1	4732477C12Rik|4930500M09Rik|AA673513|AI449218|AU021979|C820018A03Rik|KIS|Kist|OTTMUSG00000021542|P-CIP2	U2AF homology motif (UHM) kinase 1	protein-coding	1.939	1.413	0.552	nan	1.126	0.470	0.830	0.592	nan	1.209	1.385	0.855	nan	0.679	nan	1.631	0.561	2.076	1.574	2.306	1.595	nan	nan	1.160	nan
13512	chr7	108275142	108277727	+	0	NA	Intergenic	Intergenic	10690	NM_146498	258491	Mm.377533	NM_146498	ENSMUSG00000109884	Olfr490	MOR204-17	olfactory receptor 490	protein-coding	4.210	2.720	1.857	3.729	3.227	2.483	4.735	6.608	4.011	4.289	1.193	1.978	7.636	5.890	5.673	6.822	5.826	5.518	nan	0.932	0.564	1.621	0.847	0.801	4.125
9217	chr3	30936176	30938585	+	0	NA	intron (NM_001165955, intron 6 of 13)	intron (NM_001165955, intron 6 of 13)	32035	NM_001165954	241915	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic-like 3 (Drosophila)	protein-coding	2.863	0.440	0.509	nan	3.254	1.881	3.135	3.516	nan	2.760	1.369	1.193	4.106	3.702	3.550	3.838	2.880	4.561	0.922	0.540	0.751	0.470	0.687	0.323	3.064
1664	chr10	96106147	96107765	+	0	NA	Intergenic	Intergenic	-119251	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	4.004	1.315	0.827	2.173	2.706	2.760	3.691	5.056	2.474	2.091	nan	1.762	3.049	3.866	3.323	2.663	5.250	2.494	nan	1.468	2.250	nan	1.391	2.032	3.073
191	chr1	55143417	55146574	+	0	NA	intron (NM_025283, intron 2 of 7)	intron (NM_025283, intron 2 of 7)	13750	NM_025283	19070	Mm.291037	NM_025283	ENSMUSG00000025979	Mob4	2610109B12Rik|Mobkl3|Phocn|Prei3	MOB family member 4, phocein	protein-coding	8.397	9.813	2.706	7.080	2.346	1.556	6.088	5.664	3.833	8.067	4.383	3.102	7.421	5.445	8.615	15.061	8.428	6.681	3.677	2.187	2.008	4.607	2.613	2.196	10.649
3211	chr12	17691480	17701950	+	0	NA	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	5901	NM_016677	53602	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	5.738	3.961	1.394	5.065	2.445	1.710	4.548	4.318	3.667	5.461	2.817	2.514	4.904	5.605	4.568	4.813	3.129	5.498	3.179	2.001	2.002	5.457	2.425	2.216	8.112
4613	chr14	41819530	41823212	+	0	NA	Intergenic	Intergenic	-48967	NM_001244671	100042055	Mm.429109	NM_001244671	ENSMUSG00000095226	Gm10377	ENSMUSG00000072606	predicted gene 10377	protein-coding	1.316	0.993	0.567	1.348	0.615	0.470	3.477	3.064	1.376	1.350	1.372	1.301	1.999	2.344	3.606	4.732	1.439	2.237	1.343	0.746	0.425	1.097	1.335	0.598	4.015
11191	chr5	37167676	37170435	+	0	NA	Intergenic	Intergenic	-73003	NM_001136058	12933	Mm.290995	NM_007765	ENSMUSG00000029121	Crmp1	CRMP-1|DRP-1|Dpysl1|ULIP-3|Ulip3	collapsin response mediator protein 1	protein-coding	0.382	0.587	0.410	0.176	0.380	0.179	0.705	0.202	0.417	0.281	1.703	0.318	0.077	0.786	nan	0.436	nan	nan	3.352	2.957	2.344	2.299	6.846	4.679	0.500
3612	chr12	88721283	88724137	+	0	NA	Intergenic	Intergenic	-71794	NM_001198587	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	5.950	0.831	0.546	3.474	3.583	1.811	5.354	2.863	4.178	3.410	1.603	1.268	4.260	4.368	4.711	5.424	4.391	6.215	0.714	0.982	0.478	0.935	0.440	0.271	6.068
11989	chr5	150235109	150238334	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-23209	NM_172887	320365	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	5.024	0.570	0.123	nan	1.658	0.954	4.589	5.244	nan	4.554	4.182	4.064	5.694	3.921	3.571	4.673	5.183	2.775	1.761	1.770	1.338	2.012	2.624	1.800	4.258
15728	chrX	53707450	53710363	+	0	NA	intron (NR_110489, intron 5 of 6)	intron (NR_110489, intron 5 of 6)	7672	NR_110489	331578	Mm.483375	NR_110489	ENSMUSG00000085998	AW822252	C230063B02	expressed sequence AW822252	ncRNA	5.609	6.257	2.875	4.265	3.208	1.899	3.800	3.475	1.921	5.369	2.680	1.244	3.293	5.623	4.844	5.431	3.708	4.179	3.768	2.419	1.919	3.471	2.871	3.485	7.476
12081	chr6	21950368	21955446	+	0	NA	intron (NM_001311061, intron 3 of 11)	intron (NM_001311061, intron 3 of 11)	3292	NM_023626	71777	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	1.501	nan	0.451	1.657	1.009	0.423	0.699	0.652	nan	1.072	0.682	0.395	0.381	1.031	1.034	nan	0.873	1.397	4.191	4.407	2.076	6.592	4.089	2.639	1.159
11524	chr5	106012183	106018888	+	0	NA	Intergenic	Intergenic	138967	NM_018759	54367	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	7.064	2.140	1.148	4.991	4.695	2.227	9.258	6.403	6.713	8.632	2.247	2.372	9.099	8.084	9.359	8.683	5.344	8.314	nan	1.231	0.709	1.081	1.117	0.646	7.172
8457	chr2	92262275	92276026	+	0	NA	intron (NM_001346704, intron 6 of 18)	intron (NM_001346704, intron 6 of 18)	47588	NM_001109690	192285	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	7.726	2.155	0.729	7.269	2.611	1.382	5.219	10.647	4.719	5.465	2.261	2.025	7.865	9.848	8.302	12.338	8.149	8.849	3.170	1.679	1.263	3.551	2.183	1.518	11.543
13553	chr7	116071097	116074079	+	0	NA	Intergenic	L1VL2|LINE|L1	20561	NR_029433	69350	Mm.440425	NR_029433	ENSMUSG00000087621	1700003G18Rik	2610312K03Rik	RIKEN cDNA 1700003G18 gene	ncRNA	2.745	0.921	0.512	0.946	1.559	0.730	4.150	4.910	0.793	0.780	5.740	1.997	2.153	nan	1.836	0.683	0.880	1.208	0.778	1.036	0.366	0.336	0.527	0.296	0.980
262	chr1	66859963	66863515	+	0	NA	intron (NM_007381, intron 1 of 10)	intron (NM_007381, intron 1 of 10)	1570	NM_007381	11363	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	9.907	5.450	1.704	5.277	4.118	1.515	6.407	4.548	4.431	5.241	4.298	2.626	7.397	8.254	5.445	7.799	6.306	6.185	3.125	2.454	1.473	3.455	3.224	1.777	6.532
1944	chr11	6193584	6199574	+	0	NA	intron (NM_173748, intron 1 of 5)	MTD|LTR|ERVL-MaLR	3872	NM_173748	209586	Mm.25321	NM_173748	ENSMUSG00000053838	Nudcd3	AI427847|BC024322|mKIAA1068	NudC domain containing 3	protein-coding	4.971	1.404	0.892	3.259	3.565	2.932	3.191	3.210	4.387	3.923	1.716	1.155	4.401	6.544	2.931	3.846	2.988	5.206	1.000	nan	0.778	0.904	0.863	0.536	2.862
9694	chr3	108123437	108124983	+	0	NA	intron (NM_010306, intron 1 of 8)	intron (NM_010306, intron 1 of 8)	21942	NM_010306	14679	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	1.387	0.647	0.476	1.661	1.338	1.137	0.988	0.559	1.435	1.732	4.352	0.667	2.446	1.869	1.338	1.596	2.030	1.889	1.600	0.771	0.513	1.291	1.735	1.508	1.805
5165	chr15	53089053	53090925	+	0	NA	exon (NM_010162, exon 6 of 11)	exon (NM_010162, exon 6 of 11)	256194	NM_010162	14042	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	5.770	0.860	1.165	2.598	2.770	1.648	6.726	5.003	3.738	3.763	5.028	2.451	8.797	4.743	3.705	4.867	6.612	3.192	0.548	1.147	0.872	0.408	0.815	0.686	2.905
6959	chr17	88563648	88565336	+	0	NA	intron (NM_028658, intron 12 of 21)	L1MB8|LINE|L1	34368	NM_028658	73825	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	0.508	9.528	5.248	1.024	0.304	0.358	0.500	0.261	nan	0.269	0.692	0.243	0.140	0.204	0.545	0.332	0.497	0.716	0.661	0.927	0.421	1.019	0.536	0.275	0.624
13077	chr7	30061220	30069371	+	0	NA	intron (NM_177889, intron 5 of 6)	RLTR20B4_MM|LTR|ERVK	7528	NM_177889	330502	Mm.295906	NM_177889	ENSMUSG00000098022	Zfp82	A030010D05|Krab16|Mszf3|Zfp-82	zinc finger protein 82	protein-coding	5.618	3.104	1.456	4.863	5.821	3.939	6.682	8.965	3.811	5.489	4.121	3.108	5.967	8.106	6.269	6.285	4.941	5.760	3.308	2.520	2.425	3.079	3.204	2.896	8.030
10458	chr4	120040396	120045739	+	0	NA	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-118139	NM_007902	13615	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	2.830	6.214	2.832	2.689	2.642	1.161	3.447	2.819	4.950	6.814	1.328	0.710	4.117	7.740	5.038	5.927	2.944	3.563	1.183	0.856	0.536	1.160	0.805	0.651	7.895
11562	chr5	111758421	111760721	+	0	NA	intron (NR_045832, intron 1 of 4)	intron (NR_045832, intron 1 of 4)	2157	NR_045834	269683	Mm.136946	NM_207252	ENSMUSG00000085271	E130006D01Rik	Gm16018|Gm681|OTTMUSG00000029083	RIKEN cDNA E130006D01 gene	ncRNA	3.805	6.490	2.497	6.320	3.091	1.331	5.325	3.601	2.831	5.633	3.673	1.916	4.926	6.268	5.727	5.544	3.756	3.402	nan	2.029	1.379	3.381	2.625	2.887	7.763
9206	chr3	29902903	29915262	+	0	NA	intron (NR_110437, intron 1 of 1)	intron (NR_110437, intron 1 of 1)	18065	NR_110437	102636083		NR_110437	ENSMUSG00000102590	Mannr	Manr	Mecom adjacent non-protein coding RNA	ncRNA	5.556	0.567	0.473	nan	4.791	2.357	nan	1.372	nan	8.433	3.431	5.273	6.093	4.072	nan	5.701	5.444	nan	0.882	1.355	0.744	1.565	0.696	0.498	4.477
6109	chr16	48477724	48480859	+	0	NA	intron (NM_010816, intron 8 of 26)	intron (NM_010816, intron 8 of 26)	48054	NM_010816	17450	Mm.250060	NM_010816	ENSMUSG00000022652	Morc1	Morc	microrchidia 1	protein-coding	6.588	0.405	0.219	2.763	2.409	1.523	4.010	6.680	5.516	5.778	0.571	2.758	6.113	5.279	4.014	4.581	4.051	6.083	1.041	0.852	0.621	1.116	0.755	0.941	3.553
12197	chr6	42298662	42303361	+	0	NA	intron (NM_013491, intron 12 of 22)	intron (NM_013491, intron 12 of 22)	14326	NM_013491	12723	Mm.386757	NM_013491	ENSMUSG00000029862	Clcn1	Clc-1|Clc1|SMCC1|adr|mto|myotonia|nmf355	chloride channel, voltage-sensitive 1	protein-coding	6.534	7.091	1.806	8.955	5.261	2.678	7.380	5.991	5.079	6.724	4.825	3.532	6.000	7.736	7.475	8.807	4.720	6.966	nan	1.291	1.754	nan	nan	2.113	10.403
2099	chr11	44331814	44335075	+	0	NA	Intergenic	Intergenic	-66619	NM_001303244	16160	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	9.773	17.312	7.847	7.990	5.175	3.918	10.158	9.635	5.530	10.147	7.257	4.722	8.357	10.052	8.276	8.830	7.624	7.932	5.743	7.555	5.358	nan	nan	7.035	9.834
9504	chr3	93358297	93361123	+	0	NA	Intergenic	Intergenic	-33989	NM_009100	20129	Mm.1417	NM_009100	ENSMUSG00000041984	Rptn	-	repetin	protein-coding	7.270	6.093	1.324	7.971	5.927	2.334	5.678	9.254	4.224	5.648	8.030	2.126	6.542	9.582	7.601	9.722	6.224	8.055	1.429	1.544	1.351	2.321	0.504	0.369	9.712
2476	chr11	75747185	75754145	+	0	NA	intron (NM_009536, intron 1 of 5)	intron (NM_009536, intron 1 of 5)	17778	NM_009536	22627	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	nan	2.758	0.833	7.308	3.186	2.211	nan	5.174	3.561	3.494	5.366	2.046	3.786	nan	nan	6.614	4.486	nan	3.853	3.441	nan	5.130	4.077	3.688	5.297
2988	chr11	115815280	115819403	+	0	NA	intron (NM_029557, intron 6 of 10)	intron (NM_029557, intron 6 of 10)	2602	NM_029557	76265	Mm.275438	NM_029557	ENSMUSG00000020781	Tsen54	0610034P02Rik	tRNA splicing endonuclease subunit 54	protein-coding	2.819	nan	0.795	2.496	1.012	0.502	4.503	6.099	3.719	nan	7.821	6.195	3.480	4.811	4.961	3.729	1.506	nan	3.531	nan	1.525	5.538	2.058	1.389	2.091
1921	chr11	4759774	4762616	+	0	NA	Intergenic	Intergenic	-14417	NM_138948	192650	Mm.207056	NM_138948	ENSMUSG00000009075	Cabp7	-	calcium binding protein 7	protein-coding	nan	0.566	0.433	0.634	0.924	0.838	1.327	3.572	1.545	0.815	6.860	4.872	1.191	1.615	1.323	1.072	0.971	1.169	0.910	nan	0.798	0.648	1.056	0.864	0.593
3217	chr12	17773714	17778798	+	0	NA	intron (NM_016677, intron 1 of 3)	(TG)n|Simple_repeat|Simple_repeat	85442	NM_016677	53602	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	7.944	1.223	0.582	7.040	4.001	1.656	3.196	3.250	4.531	5.956	1.288	0.938	4.184	4.930	3.766	4.582	1.968	7.733	0.929	0.694	0.495	0.973	0.645	0.443	5.634
6181	chr16	87724448	87727403	+	0	NA	intron (NM_007520, intron 4 of 4)	intron (NM_007520, intron 4 of 4)	26971	NM_007520	12013	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	5.434	nan	0.550	4.933	2.464	1.459	3.593	8.100	5.206	7.178	0.998	2.055	6.591	7.107	5.405	7.277	5.903	8.830	0.891	0.823	0.639	nan	0.651	0.439	6.457
14688	chr8	122858573	122859962	+	0	NA	exon (NM_007662, exon 4 of 14)	exon (NM_007662, exon 4 of 14)	10893	NM_007662	12555	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	1.505	4.671	1.235	4.587	1.383	1.066	9.227	5.800	1.793	2.515	0.459	0.977	1.411	3.455	4.775	3.218	1.155	2.109	7.134	3.123	2.405	9.106	3.245	3.356	4.747
4923	chr14	102078001	102079814	+	0	NA	Intergenic	Intergenic	238284	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.597	10.117	6.771	0.543	0.475	0.568	0.466	0.922	0.750	0.303	0.266	0.328	0.413	0.330	0.567	0.483	0.720	0.815	0.919	0.837	0.382	0.258	0.940	0.921	nan
14001	chr8	11338708	11342338	+	0	NA	intron (NM_009932, intron 3 of 47)	intron (NM_009932, intron 3 of 47)	-27697	NM_009931	12826	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	4.703	1.331	0.573	6.497	3.609	1.868	2.947	6.622	4.335	5.478	3.130	1.490	3.774	4.957	5.178	6.108	2.838	7.099	0.586	0.829	0.491	1.631	0.336	0.237	5.944
11573	chr5	113463392	113467286	+	0	NA	Intergenic	Intergenic	-85081	NM_177292	320916	Mm.102783	NM_177292	ENSMUSG00000063430	Wscd2	4933413A10Rik|C530024P05Rik|Gm450	WSC domain containing 2	protein-coding	5.934	1.732	0.622	4.572	3.141	1.515	6.250	3.260	4.076	5.886	1.422	1.546	4.911	6.434	5.760	6.632	4.287	5.456	4.257	nan	1.906	3.543	nan	2.271	6.410
8267	chr2	59465985	59468730	+	0	NA	Intergenic	Intergenic	-17296	NM_029723	76747	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	6.066	1.816	0.876	4.551	3.332	2.274	3.591	6.498	2.626	3.385	1.775	1.212	4.065	5.237	3.238	5.514	4.087	5.143	2.180	3.496	2.170	5.464	1.350	1.006	5.217
1901	chr11	3882967	3886541	+	0	NA	Intergenic	L1_Mur3|LINE|L1	10372	NM_026150	67430	Mm.347950	NM_026150	ENSMUSG00000020434	4921536K21Rik	AV043724	RIKEN cDNA 4921536K21 gene	protein-coding	3.984	0.460	0.197	4.023	2.881	1.734	4.767	7.634	3.775	5.898	4.069	3.716	5.800	7.388	5.117	5.914	3.241	5.387	1.961	nan	1.282	2.137	3.774	3.869	4.540
10134	chr4	59470440	59476751	+	0	NA	3' UTR (NM_144904, exon 15 of 15)	3' UTR (NM_144904, exon 15 of 15)	-34962	NM_001163288	634731	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528|OTTMUSG00000007332	sushi domain containing 1	protein-coding	1.715	nan	0.565	1.327	1.111	0.305	nan	1.398	1.227	1.290	1.422	1.053	0.856	1.439	1.423	1.998	1.019	2.348	3.987	2.140	1.250	8.136	3.266	2.011	2.453
6966	chr17	89461525	89462979	+	0	NA	Intergenic	Intergenic	83011	NR_045952	100043904	Mm.396198	NR_045952		Gm4719	-	predicted gene 4719	ncRNA	1.847	0.833	0.634	1.580	0.520	0.335	4.992	5.814	2.928	4.540	4.425	1.427	3.526	5.045	3.127	1.594	4.978	1.842	0.569	0.539	0.649	0.752	0.362	0.240	0.640
15744	chrX	71090258	71091212	+	0	NA	intron (NM_001081354, intron 1 of 6)	intron (NM_001081354, intron 1 of 6)	40479	NM_001081354	333639	Mm.371730	NM_001081354	ENSMUSG00000059401	Mamld1	G630014P10Rik	mastermind-like domain containing 1	protein-coding	1.075	0.328	0.231	0.798	0.593	0.016	0.283	0.721	1.236	1.595		0.103	0.724	2.921	1.296	1.328	1.171	1.079	0.880	0.473	0.115	0.432	0.337	0.202	1.106
10578	chr4	129751874	129753392	+	0	NA	Intergenic	B1_Mur1|SINE|Alu	-10330	NR_045036	20218	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	1.854	0.850	0.330	1.110	0.605	0.663	1.485	3.333	2.467	3.045	1.179	0.920	2.256	6.106	3.366	5.681	1.477	3.282	1.288	0.888	0.668	2.921	0.541	0.766	2.781
7409	chr18	77181385	77183641	+	0	NA	Intergenic	(TAG)n|Simple_repeat|Simple_repeat	-3334	NM_153124	225742	Mm.365178	NM_013666	ENSMUSG00000025425	St8sia5	ST8SiaV|Siat8e	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	protein-coding	7.523	nan	2.039	5.784	2.713	1.221	6.519	6.322	3.471	6.759	3.837	1.723	6.515	7.127	5.976	7.701	5.703	7.718	4.029	nan	1.472	3.317	2.855	1.529	10.512
9460	chr3	89046815	89052201	+	0	NA	intron (NM_138679, intron 11 of 26)	intron (NM_138679, intron 11 of 26)	40523	NM_001083808	72296	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	4.509	4.413	1.787	5.083	3.255	2.115	8.830	4.527	2.436	3.755	2.310	1.989	5.267	7.054	5.226	5.903	5.142	4.871	nan	3.506	2.940	5.438	4.546	4.096	7.884
359	chr1	82713404	82716322	+	0	NA	intron (NM_007734, intron 47 of 51)	intron (NM_007734, intron 47 of 51)	-10027	NM_001310697	75734	Mm.396863	NM_029409	ENSMUSG00000026150	Mff	5230400G24Rik|AI314724	mitochondrial fission factor	protein-coding	4.511	0.310	0.252	2.206	2.317	1.298	4.082	3.384	3.930	4.510	0.806	0.550	7.516	5.597	4.812	6.417	7.273	5.530	nan	nan	0.273	0.512	nan	0.291	2.517
7502	chr19	5988607	5990277	+	0	NA	intron (NM_001110504, intron 21 of 21)	intron (NM_001110504, intron 21 of 21)	-3299	NM_198650	381203	Mm.329638	NM_198650	ENSMUSG00000037451	Slc22a20	Gm963|OAT1-L|mOAT6	solute carrier family 22 (organic anion transporter), member 20	protein-coding	5.547	5.106	2.580	1.626	2.340	1.294	11.705	10.666	nan	1.890	2.770	2.187	2.658	4.982	5.427	5.314	5.685	3.077	1.415	1.922	1.619	1.815	1.711	2.620	4.407
1229	chr10	40217619	40222930	+	0	NA	Intergenic	B4|SINE|B4	26705	NM_001042556	67239	Mm.11480	NM_023323	ENSMUSG00000038510	Rpf2	2810470K21Rik|AU040229|AU043242|Bxdc1	ribosome production factor 2 homolog	protein-coding	4.405	1.304	0.817	2.141	0.619	0.765	2.433	3.829	3.709	3.065	2.601	7.220	2.009	2.991	3.515	3.685	3.283	4.334	1.872	1.380	1.362	2.030	1.170	0.891	3.336
1001	chr1	186758973	186761974	+	0	NA	Intergenic	Intergenic	-11115	NM_026041	67223	Mm.289841	NM_026041	ENSMUSG00000001305	Rrp15	2810430M08Rik|5430437H21Rik	ribosomal RNA processing 15 homolog (S. cerevisiae)	protein-coding	2.485	0.497	0.629	0.583	0.338	0.208	0.632	0.895	0.595	0.612	1.394	1.319	0.713	0.509	0.610	nan	0.959	0.902	5.191	4.401	1.914	4.197	3.224	1.573	0.936
2608	chr11	87926456	87929624	+	0	NA	Intergenic	Intergenic	-13037	NM_146412	258407	Mm.271337	NM_146412	ENSMUSG00000060787	Olfr464	MOR240-2	olfactory receptor 464	protein-coding	1.204	1.229	0.675	4.940	2.251	1.273	0.720	0.789	0.948	1.038	2.108	0.890	0.308	1.241	1.125	1.075	0.498	1.299	5.322	5.449	5.597	nan	5.111	4.075	nan
2614	chr11	88368967	88372711	+	0	NA	intron (NM_054043, intron 10 of 13)	intron (NM_054043, intron 10 of 13)	18066	NR_039545	100628571		NR_039545	ENSMUSG00000092985	Mir378b	mir-378b|mmu-mir-378b	microRNA 378b	ncRNA	5.019	7.557	2.190	6.713	3.762	1.597	5.065	6.235	3.675	3.899	2.368	2.286	3.056	6.571	5.100	4.931	3.490	5.053	3.406	1.646	1.277	nan	2.366	1.785	nan
3694	chr12	106747631	106751065	+	0	NA	Intergenic	Intergenic	-33024	NR_015512	71033	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA	3.678	0.943	0.460	3.704	2.130	1.321	5.361	nan	3.799	4.263	0.622	0.481	5.411	6.251	3.305	1.247	0.907	2.886	0.605	0.635	0.643	0.875	0.649	0.281	3.801
13205	chr7	53866654	53872100	+	0	NA	Intergenic	Lx9|LINE|L1	22512	NR_105746	102466619		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	2.894	2.228	1.049	4.439	1.835	0.848	2.170	4.657	3.657	3.674	1.062	1.193	4.602	4.544	5.895	5.528	2.480	6.211	1.781	0.755	0.564	2.474	0.588	0.401	7.233
225	chr1	60056671	60058119	+	0	NA	Intergenic	L1_Mus3|LINE|L1	-14273	NM_001316695	70375	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15	islet cell autoantigen 1-like	protein-coding	3.654	1.245	1.029	2.116	4.577	2.169	3.101	3.164	1.575	2.398	3.334	2.932	3.871	4.482	3.121	4.881	1.713	3.645	0.764	0.556	0.487	0.636	0.524	0.576	3.291
142	chr1	40521522	40528382	+	0	NA	exon (NM_010553, exon 5 of 13)	exon (NM_010553, exon 5 of 13)	9590	NM_010553	16174	Mm.20466	NM_010553	ENSMUSG00000026068	Il18rap	AcPL|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1RAcPL	interleukin 18 receptor accessory protein	protein-coding	9.267	2.878	1.429	4.002	4.950	2.280	7.944	5.523	4.153	4.910	4.267	2.644	8.830	6.103	4.994	9.734	7.158	6.783	0.626	1.164	0.863	0.374	1.846	1.780	6.113
12949	chr7	17527086	17536771	+	0	NA	Intergenic	RMER5|LTR|ERV1	-140385	NR_002857	232919	Mm.153893	NR_002857	ENSMUSG00000108558	Psg-ps1	AV036018|Cea-6|Cea6	pregnancy specific glycoprotein pseudogene 1	pseudo	0.689	1.927	0.772	1.149	0.235	0.139	0.346	0.717	0.508	0.478	0.244	0.277	0.309	0.410	0.695	0.702	0.551	0.644	5.493	2.970	2.910	5.267	4.487	3.666	1.345
10450	chr4	119514416	119520281	+	0	NA	Intergenic	B1_Mur3|SINE|Alu	21421	NM_001004178	433752	Mm.425205	NM_001004178	ENSMUSG00000087385	AA415398	-	expressed sequence AA415398	protein-coding	4.635	0.986	0.500	2.553	1.505	1.043	3.456	5.109	3.872	3.278	4.404	4.318	4.132	4.311	4.372	4.523	3.080	4.402	7.091	4.394	2.175	7.603	5.151	2.916	3.865
9007	chr2	166649403	166651519	+	0	NA	intron (NM_177782, intron 1 of 39)	intron (NM_177782, intron 1 of 39)	-22257	NR_105783	102465188		NR_105783	ENSMUSG00000098675	Mir6364	Gm27327|mmu-mir-6364	microRNA 6364	ncRNA	5.583	3.927	2.096	3.375	4.074	2.455	4.053	5.503	2.954	3.693	1.278	0.988	5.334	5.392	4.379	6.540	3.659	5.813	2.298	2.484	1.494	4.338	0.953	1.010	7.492
5392	chr15	77775105	77778184	+	0	NA	intron (NM_022410, intron 20 of 40)	intron (NM_022410, intron 20 of 40)	-21415	NM_001081970	239552	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	2.796	nan	0.547	nan	3.226	1.517	nan	10.366	2.544	3.814	nan	0.844	6.701	9.213	2.699	2.168	nan	2.552	1.040	0.862	0.647	nan	0.609	0.432	2.484
14226	chr8	48747773	48750077	+	0	NA	Intergenic	Intergenic	-74235	NM_011857	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding	5.487	0.719	0.821	2.488	3.154	2.062	3.609	4.954	2.658	2.960	0.828	1.343	5.812	5.582	3.309	5.676	7.132	4.061	0.683	1.062	0.744	0.457	1.004	0.674	2.817
4491	chr14	19133726	19135112	+	0	NA	Intergenic	MMERVK9E_I-int|LTR|ERVK	-240792	NM_144839	218793	Mm.23551	NM_144839	ENSMUSG00000058317	Ube2e2	BC016265	ubiquitin-conjugating enzyme E2E 2	protein-coding	3.460	3.558	1.522	2.635	2.041	0.697	2.539	3.268	2.326	3.052	3.266	1.159	2.420	3.640	3.171	4.606	2.637	3.740	1.047	0.731	0.467	nan	0.799	0.401	3.313
14965	chr9	37175960	37176939	+	0	NA	Intergenic	Intergenic	-29127	NM_001029838	208076	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	5.281	0.970	0.357	4.166	1.449	0.522	4.462	3.080	3.594	2.942	0.725	1.307	4.033	3.607	3.409	6.960	4.268	4.758	nan	0.472	1.106	0.556	0.687	0.684	3.049
13172	chr7	52307250	52309482	+	0	NA	Intergenic	Intergenic	-292650	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	8.750	11.996	4.491	8.317	2.772	2.389	9.534	9.391	4.654	9.995	8.870	4.390	7.377	10.408	8.867	10.033	7.319	7.514	5.646	2.982	3.505	6.239	3.785	5.355	15.577
8190	chr2	35475003	35485666	+	0	NA	Intergenic	Intergenic	-18885	NM_001145821	14594	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	2.863	1.288	0.318	4.537	1.718	0.828	2.637	5.804	2.602	nan	0.731	0.815	3.646	3.450	4.206	6.566	3.448	4.246	0.719	0.662	0.612	1.053	0.607	0.499	5.472
8667	chr2	130952259	130956482	+	0	NA	intron (NM_009730, intron 6 of 28)	PB1D10|SINE|Alu	47875	NM_009730	11990	Mm.119936	NM_009730	ENSMUSG00000027312	Atrn	AW558010|Mgca|mg	attractin	protein-coding	3.862	1.450	0.406	6.073	1.715	0.997	1.983	2.233	2.663	3.344	1.091	1.337	1.382	1.830	1.971	nan	1.627	3.929	nan	1.211	0.936	1.023	1.089	0.977	3.528
7202	chr18	39859548	39861977	+	0	NA	Intergenic	Intergenic	87265	NM_011033	18459	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	5.934	0.888	0.558	3.747	3.975	1.200	5.773	3.801	3.972	4.318	1.041	0.930	8.188	7.130	6.445	6.581	5.312	9.177	0.883	0.761	0.336	0.946	0.692	0.261	4.752
12447	chr6	90703970	90709277	+	0	NA	intron (NM_001134384, intron 1 of 13)	intron (NM_001134384, intron 1 of 13)	9906	NM_001134383	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	3.658	11.241	3.741	4.002	1.580	0.529	3.044	3.110	1.639	2.578	1.585	0.740	3.317	3.899	2.647	5.036	2.136	2.907	nan	1.326	0.598	3.174	1.184	0.703	4.490
3170	chr12	8647203	8648372	+	0	NA	Intergenic	Intergenic	-26347	NM_001160221	80913	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	11.039	11.256	7.027	12.371	7.520	6.880	10.245	7.694	8.050	12.813	6.691	4.409	8.578	8.631	9.201	9.548	10.004	8.102	6.687	4.195	6.924	5.625	7.797	10.145	17.186
5795	chr16	11005650	11010138	+	0	NA	Intergenic	(GTTTG)n|Simple_repeat|Simple_repeat	-1004	NR_040518	100043147	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	9.896	3.647	2.233	7.511	5.848	4.005	5.234	6.603	5.759	5.990	5.314	3.506	3.921	5.042	4.897	5.665	4.332	6.548	3.643	2.779	3.233	2.268	4.435	3.383	6.888
10537	chr4	128013668	128016026	+	0	NA	intron (NM_001281955, intron 1 of 70)	L1ME4b|LINE|L1	26803	NM_001281955	329942	Mm.421342	NM_001281955	ENSMUSG00000028804	Csmd2	Gm139	CUB and Sushi multiple domains 2	protein-coding	1.804	0.353	0.056	0.542	0.323	0.051	1.119	0.491	1.235	1.503	0.201	0.318	2.943	2.771	nan	4.736	1.463	1.550	0.884	0.402	0.104	0.544	0.460	0.189	6.256
5288	chr15	72634674	72635940	+	0	NA	intron (NM_029640, intron 20 of 21)	intron (NM_029640, intron 20 of 21)	-89028	NM_001033876	223604	Mm.386856	NM_001033876	ENSMUSG00000036760	Kcnk9	Task3	potassium channel, subfamily K, member 9	protein-coding	2.637	0.996	0.818	1.801	1.967	1.209	2.883	2.552	1.406	1.653	0.725	0.988	2.075	3.550	2.250	1.989	2.577	2.917	3.169	2.168	1.230	3.290	2.084	1.407	2.439
14780	chr8	127349631	127351814	+	0	NA	intron (NM_001309391, intron 5 of 24)	intron (NM_001309391, intron 5 of 24)	51070	NM_001013580	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	3.224	nan	0.370	3.926	3.873	2.561	nan	4.067	3.811	4.407	2.890	1.006	7.591	8.300	5.162	6.053	4.198	3.937	nan	0.664	0.901	nan	0.328	nan	nan
15376	chr9	89898232	89905106	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	-8106	NM_011245	19417	Mm.44561	NM_011245	ENSMUSG00000032356	Rasgrf1	AI844718|CDC25|CDC25Mm|Gnrp|Grf1|Grfbeta|P190-A|Ras-GRF1|p190|p190RhoGEF	RAS protein-specific guanine nucleotide-releasing factor 1	protein-coding	6.042	0.794	0.558	4.345	3.828	2.052	6.208	6.098	6.013	8.445	1.602	1.196	4.940	9.531	5.803	6.291	3.695	8.606	0.372	0.709	0.782	0.421	0.458	0.389	9.492
3923	chr13	31418497	31425186	+	0	NA	Intergenic	Intergenic	-136329	NM_008239	15220	Mm.44235	NM_008239	ENSMUSG00000038415	Foxq1	HFH-1|Hfh1|Hfh1l|sa	forkhead box Q1	protein-coding	1.653	1.012	0.832	0.570	0.754	0.712	2.507	4.029	1.939	1.588	7.651	3.822	1.840	2.455	1.753	1.859	1.163	1.682	0.728	0.790	0.385	0.664	0.501	0.354	2.344
13132	chr7	35869351	35872043	+	0	NA	Intergenic	B3A|SINE|B2	-67708	NM_177739	668501	Mm.286296	NM_177739	ENSMUSG00000044452	Zfp507	1810022O10Rik|A230056M16Rik|AL024009|AU021817|BB105092|Gm480|Znf507|mKIAA1084	zinc finger protein 507	protein-coding	6.188	1.183	0.709	4.954	5.720	3.864	9.881	9.959	4.986	5.430	6.213	4.042	9.863	7.773	7.503	7.294	7.227	7.059	3.580	2.609	2.286	4.358	3.967	3.299	7.479
3135	chr11	121339607	121342083	+	0	NA	intron (NM_025793, intron 3 of 9)	intron (NM_025793, intron 3 of 9)	13602	NM_025793	66840	Mm.103986	NM_025793	ENSMUSG00000025173	Wdr45b	0610008N23Rik|AA408735|D16Bwg0193e|WIPI-3|Wdr45l	WD repeat domain 45B	protein-coding	0.715	nan	0.939	0.893	1.023	0.862	nan	nan	0.526	nan	7.902	1.614	0.632	0.533	0.788	0.963	0.769	nan	0.785	nan	1.208	0.610	0.665	0.534	0.992
3730	chr12	112074083	112075821	+	0	NA	Intergenic	Intergenic	-31731	NM_001081169	104816	Mm.77133	NM_001081169	ENSMUSG00000037686	Aspg	A530050D06Rik|AI429460|Gm690	asparaginase	protein-coding	3.992	0.697	0.419	2.574	1.564	0.930	3.097	2.440	2.385	nan	0.833	0.506	2.435	4.841	3.342	3.177	2.775	3.091	0.550	0.606	0.351	0.549	0.418	0.311	nan
3665	chr12	103605703	103607907	+	0	NA	intron (NM_028980, intron 22 of 24)	intron (NM_028980, intron 22 of 24)	24639	NM_001301404	217847	Mm.29094	NM_144834	ENSMUSG00000061947	Serpina10	PZI|ZPI	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10	protein-coding	6.682	9.039	1.818	5.032	2.766	1.404	1.659	1.793	2.569	3.990	2.711	0.823	2.376	3.872	3.248	2.824	2.021	2.843	1.050	2.285	1.007	1.015	0.623	0.567	5.105
4356	chr13	103478388	103486268	+	0	NA	Intergenic	Lx5|LINE|L1	-147836	NM_175171	328329	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	3.261	11.852	5.298	2.591	0.973	0.375	1.151	1.040	nan	nan	0.894	0.777	0.983	1.645	1.950	2.025	1.329	2.348	0.890	1.562	0.435	nan	0.584	0.326	2.431
12935	chr7	16922242	16927792	+	0	NA	promoter-TSS (NM_007590)	promoter-TSS (NM_007590)	-985	NM_007590	12315	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|R75142	calmodulin 3	protein-coding	3.178	4.293	2.339	3.903	2.880	2.850	6.915	5.500	4.028	4.257	1.827	0.713	8.096	8.403	7.653	5.001	4.254	5.533	2.194	0.991	1.280	1.734	1.276	1.651	5.078
7054	chr18	20875676	20877943	+	0	NA	intron (NM_177038, intron 2 of 28)	L1MC4a|LINE|L1	19269	NM_177038	75964	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	3.588	0.677	1.199	0.608	1.309	0.779	9.284	7.556	3.962	2.832	1.880	3.308	6.335	5.740	3.510	3.002	5.174	2.611	1.169	1.320	1.411	0.364	1.737	1.677	2.113
12527	chr6	99032974	99036597	+	0	NA	intron (NM_001347345, intron 6 of 19)	intron (NM_001347345, intron 6 of 19)	-6487	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	2.489	1.202	1.216	1.940	3.474	2.223	3.500	5.095	2.554	3.113	3.976	2.858	3.180	5.204	4.289	5.637	4.392	3.820	nan	nan	1.129	2.529	0.821	0.794	3.052
11981	chr5	149805277	149808837	+	0	NA	intron (NR_077242, intron 1 of 4)	intron (NR_077242, intron 1 of 4)	4694	NR_077242	100861794	Mm.402054	NR_077242	ENSMUSG00000106740	Gm21221	-	predicted gene, 21221	ncRNA	7.788	2.664	0.931	6.964	5.199	3.523	10.143	7.749	nan	8.668	8.727	3.899	9.477	12.436	9.435	9.591	7.134	8.346	2.851	1.572	1.484	2.670	3.152	2.704	8.865
8891	chr2	157312812	157314185	+	0	NA	intron (NM_019642, intron 11 of 16)	intron (NM_019642, intron 11 of 16)	23928	NM_001329683	14601	Mm.389327	NM_010285	ENSMUSG00000027643	Ghrh	GRF|Ghrf	growth hormone releasing hormone	protein-coding	nan	0.824	0.329	0.604	3.083	1.171	2.748	3.069	1.290	nan	0.603	0.509	nan	3.163	1.872	1.100	1.399	nan	nan	0.566	1.019	0.483	2.486	1.321	1.485
14369	chr8	81817216	81819931	+	0	NA	intron (NM_001024617, intron 7 of 24)	intron (NM_001024617, intron 7 of 24)	476011	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	9.402	9.599	4.166	9.639	5.153	3.299	6.270	8.942	6.426	8.941	7.598	5.406	9.529	9.185	8.524	11.135	8.949	9.348	6.422	4.120	3.378	8.295	4.862	3.889	11.497
4343	chr13	102248800	102254174	+	0	NA	Intergenic	MER5C|DNA|hAT-Charlie	-442071	NM_008533	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly78|RP105	CD180 antigen	protein-coding	0.794	0.898	0.560	0.532	0.233	0.149	0.504	1.309	1.174	0.751	1.870	1.223	0.866	0.687	0.987	0.772	nan	nan	3.146	3.240	0.946	5.976	1.173	0.890	0.559
7041	chr18	14815010	14817274	+	0	NA	intron (NM_001100449, intron 7 of 14)	(TTTA)n|Simple_repeat|Simple_repeat	32897	NM_001100449	72504	Mm.312233	NM_001100449	ENSMUSG00000054321	Taf4b	105kDa|2610524B04Rik|4932409F03Rik|AW987595|TAFII-105|TAFII105|Taf2c2	TATA-box binding protein associated factor 4b	protein-coding	8.248	8.654	4.038	4.995	6.919	4.279	1.349	3.344	4.386	4.389	3.361	2.450	4.062	3.721	3.902	5.087	3.727	3.703	1.888	3.131	1.635	1.701	2.263	1.500	5.956
14685	chr8	122748808	122752092	+	0	NA	Intergenic	Intergenic	-25036	NM_144932	257633	Mm.334875	NM_144932	ENSMUSG00000015016	Acsf3	BB101783	acyl-CoA synthetase family member 3	protein-coding	1.825	5.591	1.712	2.950	1.716	1.092	2.895	4.887	1.582	1.768	0.840	1.419	2.368	2.521	2.546	1.939	1.088	2.397	1.160	1.168	1.041	2.073	0.934	0.640	2.369
15058	chr9	48718162	48720430	+	0	NA	intron (NM_001033324, intron 3 of 6)	B1F|SINE|Alu	-114173	NM_010924	18113	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	0.276	0.579	0.462	0.206	0.161	0.053	0.079	0.047	0.200	0.377	0.147	0.130	0.074	0.276	nan	nan	0.113	0.347	3.959	4.001	1.753	4.858	2.069	1.040	nan
14417	chr8	87606644	87607989	+	0	NA	Intergenic	Intergenic	34894	NR_131165	73557		NR_131165		1700096P03Rik	-	RIKEN cDNA 1700096P03 gene	ncRNA	5.610	7.388	2.751	5.837	2.203	1.595	4.200	4.939	2.888	3.274	2.906	1.745	5.816	6.242	5.244	5.748	2.945	3.889	2.131	2.452	1.935	5.062	1.355	1.134	6.245
659	chr1	136390620	136392729	+	0	NA	Intergenic	Intergenic	-23597	NM_026500	67997	Mm.385462	NM_026500	ENSMUSG00000026404	Ddx59	1210002B07Rik|4833411G06Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	protein-coding	9.376	10.694	4.330	7.772	4.016	1.869	6.670	5.503	4.465	6.642	4.049	3.083	8.255	7.609	8.476	10.971	5.369	8.109	4.218	2.361	1.929	5.098	1.934	1.890	8.719
7978	chr2	13994721	13998805	+	0	NA	Intergenic	L1_Mus3|LINE|L1	59272	NM_001012396	30963	Mm.241205	NM_013935	ENSMUSG00000063275	Hacd1	Ptpla	3-hydroxyacyl-CoA dehydratase 1	protein-coding	9.808	6.862	2.733	8.088	5.799	3.544	7.498	9.328	5.970	8.872	5.664	3.913	9.104	9.016	8.252	8.805	8.603	8.631	3.857	3.186	2.562	4.459	3.132	3.380	10.924
13378	chr7	87780369	87783284	+	0	NA	intron (NM_001143834, intron 3 of 10)	L1_Mur1|LINE|L1	197658	NM_001143834	108071	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	5.854	3.699	1.225	5.870	1.985	1.045	2.287	3.552	4.111	4.771	3.734	2.587	3.623	4.578	4.507	3.870	2.070	5.596	2.238	1.229	0.989	nan	1.373	1.103	5.879
11333	chr5	72608407	72618071	+	0	NA	intron (NM_007723, intron 4 of 8)	intron (NM_007723, intron 4 of 8)	-25689	NM_001024147	545758	Mm.332426	NM_001024147	ENSMUSG00000060204	Gm5868	EG545758	predicted gene 5868	protein-coding	5.478	1.952	1.567	4.083	4.799	2.699	3.089	4.627	4.715	4.961	3.933	1.751	4.218	6.265	3.239	3.890	4.081	5.640	0.905	1.255	0.920	nan	1.216	0.978	2.844
2774	chr11	100378313	100381611	+	0	NA	intron (NM_010593, intron 6 of 13)	intron (NM_010593, intron 6 of 13)	17828	NM_010593	16480	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	3.291	nan	0.590	1.918	1.894	1.612	6.118	5.694	2.597	2.855	0.597	0.783	5.558	5.854	4.229	5.947	5.054	3.145	0.784	nan	1.074	0.561	3.988	4.020	3.139
6017	chr16	33249263	33259735	+	0	NA	intron (NM_080557, intron 1 of 13)	L1M5|LINE|L1	3043	NM_080557	69150	Mm.28196	NM_080557	ENSMUSG00000022808	Snx4	1810036H14Rik|AI037066	sorting nexin 4	protein-coding	7.832	3.113	1.513	5.455	6.979	5.631	6.598	5.849	5.792	7.587	2.276	2.078	7.040	9.248	6.136	nan	6.692	8.491	4.766	2.368	2.118	2.491	4.902	4.584	8.284
14475	chr8	95922484	95924434	+	0	NA	Intergenic	RMER12|LTR|ERVK	-35094	NM_010325	14719	Mm.230169	NM_010325	ENSMUSG00000031672	Got2	AL022787|FABP-pm|Got-2|Kyat4|mAspAT	glutamatic-oxaloacetic transaminase 2, mitochondrial	protein-coding	1.694	0.367	0.068	1.389	0.573	0.249	1.283	2.941	1.200	1.310	0.364	0.722	3.372	3.394	2.498	2.882	1.459	1.756	1.397	0.920	0.729	3.188	0.752	0.239	3.180
6716	chr17	48182234	48184872	+	0	NA	Intergenic	Intergenic	-16296	NM_178796	328830	Mm.470939	NM_178796	ENSMUSG00000043939	A530064D06Rik	Trem4|pdctrem	RIKEN cDNA A530064D06 gene	protein-coding	2.554	0.830	0.381	2.275	1.220	0.776	5.087	3.117	2.893	4.512	0.819	0.393	4.139	nan	4.355	5.970	nan	4.256	0.722	0.303	0.296	0.911	0.604	0.306	4.822
14958	chr9	34912452	34927399	+	0	NA	intron (NM_001190913, intron 2 of 13)	intron (NM_001190913, intron 2 of 13)	-196803	NR_029475	78934	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	6.017	2.930	1.082	5.338	3.116	1.593	5.184	6.178	4.938	5.326	8.016	3.713	4.430	6.026	5.541	5.867	nan	5.445	nan	1.774	1.634	2.284	2.349	1.696	8.323
15759	chrX	83020438	83023384	+	0	NA	intron (NM_007868, intron 1 of 78)	intron (NM_007868, intron 1 of 78)	73041	NM_007868	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding	4.640	3.875	1.427	3.789	2.147	1.410	2.857	4.211	3.437	4.267	4.016	1.813	3.452	4.883	4.500	5.736	nan	4.220	1.723	0.943	1.364	1.844	1.261	1.461	5.701
13970	chr8	3605394	3611917	+	0	NA	exon (NM_027171, exon 17 of 17)	exon (NM_027171, exon 17 of 17)	12641	NM_026156	67439	Mm.23739	NM_026156	ENSMUSG00000019470	Xab2	0610041O14Rik|AV025587	XPA binding protein 2	protein-coding	3.400	0.806	0.291	1.493	1.003	0.576	3.636	8.304	2.229	3.263	1.925	0.998	3.708	5.764	4.939	5.499	3.830	4.279	0.592	0.574	0.659	1.508	0.430	0.274	7.613
6815	chr17	71068780	71070595	+	0	NA	intron (NM_010867, intron 13 of 37)	intron (NM_010867, intron 13 of 37)	50130	NM_001083934	17929	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	3.354	0.777	1.078	1.509	5.786	4.089	5.209	3.904	nan	2.533	7.399	5.801	2.293	4.733	2.919	3.367	2.764	1.903	0.921	0.983	0.605	0.396	1.081	0.292	2.603
15318	chr9	75611370	75618851	+	0	NA	Intergenic	Intergenic	-3785	NM_016711	50876	Mm.291880	NM_016711	ENSMUSG00000032186	Tmod2	N-Tmod|NTMOD	tropomodulin 2	protein-coding	3.664	0.460	0.483	3.587	3.489	1.908	3.269	1.836	4.653	4.638	1.918	3.311	9.589	8.423	3.453	4.217	4.928	5.315	1.191	nan	0.539	0.439	0.564	0.379	nan
3372	chr12	66065773	66071614	+	0	NA	Intergenic	L1_Mus3|LINE|L1	215708	NM_001162933	238217	Mm.188575	NM_001162933	ENSMUSG00000060499	Rpl10l	EG238217	ribosomal protein L10-like	protein-coding	6.318	4.619	1.810	5.541	3.998	2.525	3.487	4.152	3.567	4.281	3.015	2.678	4.853	5.440	5.674	6.818	5.259	5.863	3.688	2.457	1.364	3.057	3.134	2.384	8.820
9386	chr3	79331256	79336701	+	0	NA	Intergenic	Intergenic	-11398	NM_001142953	100233207	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	5.564	1.516	0.971	4.174	3.488	1.958	2.485	3.013	4.162	4.488	5.242	2.356	5.083	5.231	5.345	6.081	3.717	5.809	2.398	1.135	0.653	2.733	1.518	0.904	5.169
1485	chr10	79557767	79571815	+	0	NA	Intergenic	Lx2B|LINE|L1	-9663	NM_027422	70427	Mm.334193	NM_027422	ENSMUSG00000042570	Mier2	2700087H15Rik|mKIAA1193	MIER family member 2	protein-coding	9.567	4.835	2.366	6.314	7.140	4.783	6.708	7.113	4.190	5.887	6.235	3.300	4.778	7.463	nan	6.638	6.056	6.623	nan	2.528	2.509	2.157	2.114	1.901	9.994
128	chr1	39532974	39537247	+	0	NA	promoter-TSS (NM_028043)	promoter-TSS (NM_028043)	-692	NM_028043	52846	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	7.846	3.332	0.953	7.724	3.301	1.200	5.339	6.470	5.751	11.986	7.187	3.032	7.713	9.097	7.315	11.230	6.500	8.433	5.867	2.690	1.830	7.088	3.398	3.146	8.203
12068	chr6	17214569	17216661	+	0	NA	Intergenic	Intergenic	17508	NR_102304	319682	Mm.136046	NR_102304	ENSMUSG00000085171	D830026I12Rik	-	RIKEN cDNA D830026I12 gene	ncRNA	2.711	nan	0.410	3.855	0.699	0.360	3.107	2.571	nan	0.833	3.132	1.143	1.317	0.939	1.043	nan	0.833	2.248	0.480	0.588	0.762	0.628	0.546	0.362	0.843
8724	chr2	140583995	140586272	+	0	NA	intron (NM_001013802, intron 3 of 18)	intron (NM_001013802, intron 3 of 18)	86343	NM_001172160	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	5.433	0.309	0.161	3.269	3.463	1.203	4.570	3.623	4.325	4.069	3.673	2.583	5.215	4.824	4.595	6.553	4.299	6.005	0.753	0.498	0.215	0.573	0.362	0.340	5.958
10662	chr4	133669748	133671773	+	0	NA	intron (NM_001145956, intron 1 of 2)	intron (NM_001145956, intron 1 of 2)	1887	NM_001145955	230801	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	5.784	5.459	2.101	2.907	1.999	1.296	6.569	8.720	3.852	3.447	5.254	1.362	6.437	5.488	7.603	7.933	4.665	5.148	3.338	3.305	4.164	4.266	nan	1.713	4.046
8848	chr2	154643788	154648548	+	0	NA	3' UTR (NM_199304, exon 15 of 15)	3' UTR (NM_199304, exon 15 of 15)	-10858	NM_029362	75608	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	6.206	1.290	0.933	2.534	3.585	2.487	1.906	2.949	3.928	nan	2.256	1.574	nan	2.772	2.538	3.140	4.915	4.728	nan	1.604	0.901	0.972	1.037	0.906	3.790
6592	chr17	35376969	35384056	+	0	NA	exon (NM_001143689, exon 3 of 6)	exon (NM_001143689, exon 3 of 6)	895	NM_001143689	15015	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	9.360	10.553	3.356	9.046	4.554	2.077	8.385	6.958	6.574	12.205	4.844	2.939	8.171	13.237	10.591	12.115	8.040	8.130	5.024	2.857	2.116	5.803	3.195	2.265	15.803
12687	chr6	122823221	122825310	+	0	NA	intron (NM_021899, intron 1 of 10)	intron (NM_021899, intron 1 of 10)	4081	NM_021899	60611	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	7.324	7.439	5.657	5.251	4.814	3.842	5.953	5.272	4.029	5.699	3.520	4.212	4.007	5.689	4.890	6.776	6.154	4.325	2.865	3.903	3.269	2.374	nan	3.764	6.320
278	chr1	71957486	71960406	+	0	NA	TTS (NR_040454)	TTS (NR_040454)	46249	NR_040454	71134	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	5.295	0.375	0.481	1.756	3.907	2.175	2.463	4.435	3.001	5.131	2.237	2.306	5.601	5.677	3.103	nan	4.572	nan	0.890	1.226	0.552	0.545	0.707	0.699	1.986
12365	chr6	83817049	83818618	+	0	NA	intron (NM_146169, intron 2 of 4)	ID_B1|SINE|B4	13908	NM_146169	232164	Mm.404420	NM_146169	ENSMUSG00000045896	Paip2b	-	poly(A) binding protein interacting protein 2B	protein-coding	4.489	6.008	2.062	nan	1.870	1.364	2.431	3.422	2.243	3.661	0.985	0.969	2.738	4.320	5.711	7.473	3.210	nan	4.433	1.615	2.016	4.063	2.884	3.116	8.584
13179	chr7	52657204	52662322	+	0	NA	Intergenic	MLTR14|LTR|ERV1	-644047	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	1.823	1.187	0.848	1.423	0.875	0.744	2.036	5.487	1.315	2.140	0.926	0.982	2.139	2.351	2.809	2.403	1.748	2.214	1.356	1.186	1.093	0.841	1.073	1.456	2.785
15806	chrX	131119727	131121395	+	0	NA	Intergenic	Lx|LINE|L1	1370819	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	5.086	6.320	1.714	3.537	3.960	2.022	2.673	3.333	3.227	3.760	3.373	1.320	3.166	4.721	4.056	5.538	2.893	4.517	2.523	1.796	1.400	2.700	2.045	1.319	5.473
12932	chr7	16879947	16883222	+	0	NA	intron (NM_001081655, intron 1 of 3)	B4A|SINE|B4	6267	NM_001081655	629378	Mm.491123	NM_001081655	ENSMUSG00000078794	Dact3	EG666671|naa-3	dishevelled-binding antagonist of beta-catenin 3	protein-coding	8.815	9.397	6.036	6.733	7.674	3.726	7.287	7.786	4.196	6.733	4.241	3.687	4.077	7.612	6.186	7.142	7.678	7.211	5.394	6.493	4.501	4.691	6.220	4.552	9.171
10516	chr4	125806916	125811821	+	0	NA	Intergenic	Intergenic	112942	NR_015560	72395	Mm.112888	NR_015560	ENSMUSG00000085562	2610028E06Rik	BB043107	RIKEN cDNA 2610028E06 gene	ncRNA	9.215	3.427	0.855	9.261	3.629	1.456	7.009	5.192	7.189	9.980	7.552	1.803	6.904	10.160	8.391	10.586	3.778	10.016	2.029	0.900	0.811	1.714	0.643	0.454	14.767
5809	chr16	13333757	13335892	+	0	NA	intron (NM_001122667, intron 3 of 16)	intron (NM_001122667, intron 3 of 16)	-23597	NM_153588	239719	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	ENSMUSG00000075401|Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	2.549	1.249	0.425	4.289	0.962	0.690	0.932	1.833	2.793	1.883	1.369	2.717	1.292	1.593	1.430	1.786	1.577	3.411	1.716	0.882	0.521	3.131	1.157	0.390	1.921
14080	chr8	24773880	24776876	+	0	NA	intron (NM_001272059, intron 16 of 18)	intron (NM_001272059, intron 16 of 18)	48991	NM_001272058	11499	Mm.143889	NM_007401	ENSMUSG00000031554	Adam5	tMDC II|tMDCII	a disintegrin and metallopeptidase domain 5	protein-coding	3.959	nan	0.466	1.032	0.545	0.330	3.685	0.805	1.903	2.380	0.197	0.363	7.932	4.565	3.048	3.029	5.969	2.337	0.555	0.845	0.372	nan	0.495	0.318	7.842
10389	chr4	114187622	114189699	+	0	NA	intron (NM_001166027, intron 1 of 6)	Lx3A|LINE|L1	25276	NM_001166027	230623	Mm.124482	NM_177669	ENSMUSG00000057977	Skint11	A630098G03Rik|Gm569	selection and upkeep of intraepithelial T cells 11	protein-coding	3.702	1.382	0.525	1.660	0.951	0.678	5.505	1.706	1.157	1.484	1.144	0.966	2.336	3.950	4.441	3.749	2.352	2.307	0.900	0.740	0.354	0.631	0.706	0.368	3.513
2626	chr11	89890983	89899075	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	107865	NM_008796	18559	Mm.5062	NM_008796	ENSMUSG00000020553	Pctp	PC-TP|StarD2	phosphatidylcholine transfer protein	protein-coding	2.251	1.910	1.290	7.265	1.236	0.723	0.470	0.745	1.826	1.267	0.707	0.500	0.537	1.288	1.009	1.410	0.720	3.176	0.586	0.767	0.686	nan	0.590	0.402	nan
5760	chr16	4902427	4907987	+	0	NA	intron (NM_029657, intron 1 of 16)	intron (NM_029657, intron 1 of 16)	19107	NM_001252437	17237	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	8.131	2.838	1.375	4.559	5.745	4.735	nan	5.220	3.987	4.769	2.061	1.202	4.520	6.720	3.403	4.872	4.155	4.788	1.328	1.656	1.214	0.936	1.598	1.273	6.714
9044	chr2	167992335	167996799	+	0	NA	intron (NM_001080708, intron 6 of 21)	intron (NM_001080708, intron 6 of 21)	16026	NM_001080708	69553	Mm.68454	NM_001080708	ENSMUSG00000074577	Fam65c	2310033K02Rik|Gm124	family with sequence similarity 65, member C	protein-coding	3.982	1.895	0.574	2.910	1.797	0.900	3.427	6.178	1.734	2.258	3.938	1.985	3.036	3.880	3.809	5.230	4.916	3.152	nan	0.682	0.908	1.236	1.110	0.862	4.870
11569	chr5	112708036	112713577	+	0	NA	intron (NM_028901, intron 42 of 43)	intron (NM_028901, intron 42 of 43)	-82486	NR_040675	67360	Mm.59218	NR_040675	ENSMUSG00000098230	1700095B10Rik	-	RIKEN cDNA 1700095B10 gene	ncRNA	6.764	5.125	0.971	6.760	4.569	2.245	nan	4.102	3.927	5.160	4.643	1.832	1.936	5.048	3.359	5.141	2.835	5.241	nan	2.503	1.749	3.219	1.164	0.778	6.099
8857	chr2	155395646	155403210	+	0	NA	intron (NM_001242558, intron 11 of 12)	intron (NM_001242558, intron 11 of 12)	17572	NM_178111	68728	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	nan	0.972	0.556	3.465	3.005	2.007	3.058	3.751	nan	nan	1.809	2.147	nan	nan	3.784	3.692	3.259	nan	nan	1.030	0.705	1.913	0.911	0.581	nan
7361	chr18	69503369	69511152	+	0	NA	intron (NM_013685, intron 5 of 19)	intron (NM_013685, intron 5 of 19)	161539	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	6.069	3.073	1.575	6.026	3.787	2.128	2.481	3.210	4.630	6.242	6.203	4.313	4.067	3.852	3.823	3.953	3.709	4.175	5.381	5.533	4.337	5.636	5.396	5.105	2.988
9941	chr4	11311811	11316345	+	0	NA	intron (NM_001081201, intron 2 of 18)	Lx2|LINE|L1	8053	NM_001081201	381510	Mm.331486	NM_001081201	ENSMUSG00000045205	Dpy19l4	Gm1023|Narg3	dpy-19-like 4 (C. elegans)	protein-coding	5.856	0.729	0.287	4.255	2.350	1.257	6.592	7.097	3.784	5.982	6.104	3.859	5.834	7.923	6.656	8.074	4.267	5.788	6.216	nan	2.615	6.888	4.197	3.790	12.850
9081	chr2	174243356	174245532	+	0	NA	Intergenic	MTE2a|LTR|ERVL-MaLR	22681	NR_029646	723906		NR_029646	ENSMUSG00000065521	Mir296	Mirn296|mir-296|mmu-mir-296	microRNA 296	ncRNA	3.077	0.929	0.441	2.139	2.345	1.555	3.202	5.047	2.776	2.557	0.622	0.917	5.197	5.611	4.527	6.685	8.157	4.447	5.492	2.583	2.124	3.144	2.050	1.715	7.590
7967	chr2	11626367	11628162	+	0	NA	Intergenic	Intergenic	-15528	NM_008367	16184	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	10.775	12.443	6.204	8.251	6.135	4.761	4.350	11.074	4.717	7.865	3.310	2.136	6.000	5.641	5.471	8.766	8.030	6.624	1.244	3.119	3.063	2.605	2.385	1.997	14.275
2712	chr11	96890629	96892113	+	0	NA	Intergenic	B1_Mur2|SINE|Alu	25143	NM_001308183	80280	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	5.921	5.890	1.842	6.659	3.420	2.558	7.249	5.914	4.216	5.380	4.682	2.565	5.593	7.235	6.596	7.930	5.758	6.062	2.054	nan	1.705	2.730	1.925	nan	9.403
13781	chr7	135109577	135112664	+	0	NA	intron (NM_001033420, intron 35 of 51)	intron (NM_001033420, intron 35 of 51)	84882	NR_046050	74314	Mm.415339	NR_046050	ENSMUSG00000100717	1700120G07Rik	-	RIKEN cDNA 1700120G07 gene	ncRNA	8.452	nan	3.496	11.190	6.072	4.914	8.215	9.113	6.636	9.971	7.645	4.814	7.824	9.653	10.210	9.846	7.220	9.223	5.388	3.321	4.647	7.071	4.373	6.203	12.104
1426	chr10	74756425	74757756	+	0	NA	Intergenic	L1_Mur3|LINE|L1	-210141	NM_010311	14687	Mm.32595	NM_010311	ENSMUSG00000040009	Gnaz	AI847979|Gz	guanine nucleotide binding protein, alpha z subunit	protein-coding	2.584	1.773	0.937	1.656	1.099	0.234	1.078	3.377	1.613	1.834	0.674	1.172	1.840	2.938	nan	1.496	1.479	2.649	nan	0.496	0.124	0.643	0.921	0.480	1.238
1562	chr10	86167914	86170039	+	0	NA	intron (NM_013722, intron 6 of 13)	ID_B1|SINE|B4	73122	NR_038024	78170	Mm.444790	NR_038024		4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	11.760	14.062	4.320	11.479	6.225	3.549	9.049	7.271	7.572	9.735	6.936	3.674	9.194	11.437	9.660	11.459	9.173	9.489	6.034	4.070	3.376	6.336	nan	4.216	15.451
7352	chr18	67927633	67928647	+	0	NA	Intergenic	MLT1E|LTR|ERVL-MaLR	-5117	NM_172631	52662	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	4.856	1.261	0.976	2.905	2.888	1.570	1.273	2.907	2.900	3.354	1.063	0.626	4.070	3.428	2.256	3.341	1.388	3.582	0.833	1.404	0.905	1.925	0.846	1.042	4.046
7759	chr19	40378917	40382646	+	0	NA	intron (NM_178362, intron 6 of 28)	intron (NM_178362, intron 6 of 28)	21529	NM_001034964	20411	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	3.006	1.172	0.684	1.858	2.552	1.031	3.158	nan	2.749	2.481	7.410	3.646	1.557	2.258	2.674	2.557	nan	1.713	0.727	0.729	0.650	2.088	0.623	0.408	2.593
10016	chr4	43402020	43406018	+	0	NA	intron (NM_001037709, intron 1 of 11)	RSINE1|SINE|B4	-2483	NM_199057	100213	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	2.093	nan	0.569	7.223	5.800	4.181	5.365	3.317	1.462	1.486	0.747	0.550	3.074	3.568	3.958	3.412	1.169	nan	0.749	1.227	0.907	nan	0.884	0.842	1.355
3647	chr12	102320091	102322186	+	0	NA	intron (NM_177620, intron 2 of 9)	MTD|LTR|ERVL-MaLR	37497	NM_001161365	217835	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	15.225	21.058	6.060	14.604	8.516	6.650	13.581	10.565	7.569	17.631	10.363	6.170	11.716	11.811	13.488	14.671	10.405	13.266	7.563	3.766	7.690	7.662	5.984	10.645	26.745
14437	chr8	89393798	89397544	+	0	NA	Intergenic	Intergenic	-351509	NM_021390	58198	Mm.214361	NM_021390	ENSMUSG00000031665	Sall1	Msal-3	sal-like 1 (Drosophila)	protein-coding	6.546	8.363	5.058	4.341	4.449	2.441	1.570	3.896	nan	2.738	1.631	1.417	1.945	2.474	2.891	3.473	2.544	4.443	nan	2.186	1.440	1.330	1.282	0.821	4.066
1557	chr10	85748257	85754851	+	0	NA	Intergenic	Intergenic	-120277	NM_133993	103136	Mm.18834	NM_133993	ENSMUSG00000001785	Pwp1	2310058A11Rik|2610205J09Rik|AI098170|AL022879|AV083409|AW550690	PWP1 homolog, endonuclein	protein-coding	nan	0.468	0.263	4.536	3.982	1.683	3.339	3.522	3.817	3.496	1.871	0.584	3.611	nan	3.078	5.523	3.814	6.649	0.725	0.524	0.502	nan	nan	0.279	5.091
2281	chr11	60621008	60625447	+	0	NA	Intergenic	MT2C_Mm|LTR|ERVL	-76463	NM_001159405	16897	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	lethal giant larvae homolog 1 (Drosophila)	protein-coding	6.709	2.117	1.748	2.701	2.184	1.891	6.883	6.809	3.534	2.655	3.382	3.156	6.455	5.566	6.541	6.514	5.747	4.830	nan	1.680	1.777	2.600	2.445	1.889	6.261
425	chr1	90998911	91009601	+	0	NA	intron (NM_001111312, intron 1 of 12)	intron (NM_001111312, intron 1 of 12)	5529	NM_001111312	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	6.995	0.762	0.329	4.480	2.933	1.257	7.031	5.826	3.603	3.882	4.509	2.104	6.885	6.674	5.757	10.942	5.109	6.616	3.132	2.217	1.253	5.279	1.710	0.932	8.253
1486	chr10	79576842	79584977	+	0	NA	intron (NM_011583, intron 6 of 7)	(TA)n|Simple_repeat|Simple_repeat	6227	NM_199226	21830	Mm.89197	NM_011583	ENSMUSG00000020317	Theg	-	testicular haploid expressed gene	protein-coding	4.830	5.157	1.823	nan	3.258	1.814	4.034	4.193	3.530	5.678	4.290	2.405	3.701	5.440	nan	5.627	4.444	5.287	6.013	3.352	3.577	6.696	5.098	6.144	8.475
6874	chr17	79961526	79967397	+	0	NA	Intergenic	Intergenic	-68338	NM_001286647	56298	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	4.006	0.609	0.555	3.160	3.277	2.138	6.282	2.598	nan	3.746	1.238	0.553	3.721	6.910	6.052	7.686	5.123	6.125	0.855	0.882	0.779	0.795	0.559	0.418	6.646
10889	chr4	148323933	148325442	+	0	NA	Intergenic	Intergenic	-36722	NM_001083342	242748	Mm.33873	NM_001083342	ENSMUSG00000041544	Ptchd2	Disp3|G630052C06Rik|RNDEu-2	patched domain containing 2	protein-coding	2.350	1.311	0.185	5.113	0.960	0.464	0.755	2.089	1.243	1.512	1.823	0.890	1.076	1.631	2.232	1.630	0.339	3.126	8.199	1.720	1.362	11.647	4.318	2.998	3.007
2056	chr11	30696679	30698553	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	-48220	NM_029344	75572	Mm.390319	NM_029344	ENSMUSG00000060923	Acyp2	2310004B09Rik	acylphosphatase 2, muscle type	protein-coding	1.208	0.513	0.681	nan	3.752	2.899	2.545	0.956	0.964	1.601	0.657	1.333	2.484	4.552	1.187	0.848	nan	1.276	1.663	1.267	0.747	0.706	0.804	0.907	0.407
4987	chr14	122093292	122098324	+	0	NA	Intergenic	RLTR17|LTR|ERVK	11166	NR_015586	319727	Mm.215552	NR_015586		A330035P11Rik	-	RIKEN cDNA A330035P11 gene	ncRNA	3.661	3.655	1.519	5.084	1.374	0.414	2.475	4.983	3.615	3.873	3.928	1.315	3.128	3.505	4.037	5.259	2.038	4.424	1.088	0.985	0.404	2.484	0.775	0.440	4.776
6883	chr17	80368257	80370130	+	0	NA	intron (NM_001145452, intron 12 of 17)	MIRb|SINE|MIR	4349	NR_028385	791338	Mm.204722	NR_028385		Gm10190	ENSMUSG00000066938	predicted gene 10190	ncRNA	3.297	5.643	1.755	3.819	4.199	1.906	7.896	3.284	nan	3.890	4.102	3.081	6.486	8.017	6.932	8.040	7.288	5.969	0.853	0.688	0.646	0.742	0.797	0.657	6.519
5223	chr15	59397084	59403584	+	0	NA	intron (NM_001164604, intron 2 of 4)	intron (NM_001164604, intron 2 of 4)	26136	NM_001164604	68501	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	4.151	1.815	0.615	3.940	2.503	0.963	nan	3.725	nan	5.542	2.187	1.173	7.359	8.482	6.403	6.206	3.466	5.291	1.561	0.709	0.528	1.673	1.396	0.788	5.826
10114	chr4	57213444	57218483	+	0	NA	intron (NM_011207, intron 19 of 25)	intron (NM_011207, intron 19 of 25)	43892	NR_040669	329851	Mm.392470	NR_040669	ENSMUSG00000085967	Gm12530	D730003B17|OTTMUSG00000007337	predicted gene 12530	ncRNA	5.195	nan	0.385	3.183	4.248	1.800	nan	6.453	3.492	4.566	1.781	1.544	5.275	8.854	5.500	6.218	3.247	5.241	nan	1.202	0.623	2.822	0.630	0.442	7.182
2876	chr11	105448007	105453331	+	0	NA	intron (NM_172568, intron 3 of 11)	B4A|SINE|B4	6066	NM_172568	632687	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|OTTMUSG00000002847|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	6.909	2.410	1.284	4.191	5.552	3.609	6.514	7.719	5.769	10.492	3.191	4.952	7.103	7.726	6.622	7.570	7.097	6.557	5.664	3.960	2.953	nan	5.356	4.969	7.241
3428	chr12	74685096	74688656	+	0	NA	Intergenic	L1MB3|LINE|L1	389402	NM_198866	386753	Mm.341686	NM_198866	ENSMUSG00000029878	Dbpht2	Spot2	DNA binding protein with his-thr domain	protein-coding	6.158	9.598	2.547	8.626	1.856	1.028	1.879	1.850	3.386	5.377	3.963	2.318	1.654	2.542	3.655	nan	2.248	5.581	2.839	1.797	1.279	3.643	1.596	1.882	6.783
7426	chr18	80898863	80907166	+	0	NA	intron (NM_001201569, intron 4 of 29)	Lx7|LINE|L1	31044	NM_001201569	50771	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	4.070	12.967	3.535	5.555	1.508	1.169	1.721	2.455	2.623	nan	1.973	1.195	2.071	2.805	3.044	4.092	2.351	4.330	1.668	nan	1.238	1.665	0.859	1.047	6.152
6889	chr17	80676755	80679576	+	0	NA	intron (NM_001290345, intron 2 of 33)	intron (NM_001290345, intron 2 of 33)	49860	NM_001290345	225028	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	6.191	0.755	0.895	3.329	4.567	3.896	8.086	5.266	nan	4.450	0.786	0.424	4.234	7.808	6.787	9.057	5.899	5.134	0.716	0.732	0.840	0.835	0.931	0.480	7.063
12841	chr6	145196083	145200531	+	0	NA	intron (NM_177222, intron 5 of 15)	intron (NM_177222, intron 5 of 15)	12663	NM_177222	320662	Mm.207779	NM_177222	ENSMUSG00000043541	Casc1	A230084G12Rik|Las1	cancer susceptibility candidate 1	protein-coding	4.553	5.492	1.403	6.040	3.538	2.332	7.080	5.211	4.178	11.634	3.408	1.926	7.080	9.433	9.122	10.806	7.264	6.361	3.390	nan	2.173	nan	2.536	3.088	nan
11046	chr5	20690564	20700012	+	0	NA	intron (NM_001170746, intron 22 of 22)	(TG)n|Simple_repeat|Simple_repeat	186836	NM_172992	68770	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	9.243	4.747	2.600	6.299	5.204	2.271	8.377	5.155	6.634	8.056	4.111	2.061	7.774	9.935	8.405	9.221	7.446	9.410	1.817	1.990	1.490	2.158	1.977	1.540	8.349
8451	chr2	91887026	91888425	+	0	NA	intron (NM_172669, intron 14 of 17)	intron (NM_172669, intron 14 of 17)	-34464	NM_007699	12672	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	1.472	0.437	0.241	1.640	0.598	0.155	3.175	6.054	1.881	2.187	0.990	1.540	4.626	4.059	2.774	3.791	3.284	2.789	3.778	1.368	0.852	2.709	2.288	2.256	3.418
5589	chr15	96224688	96226458	+	0	NA	Intergenic	Lx9|LINE|L1	-27599	NR_040423	70040	Mm.437832	NR_040423		2610037D02Rik	AU024679	RIKEN cDNA 2610037D02 gene	ncRNA	5.636	0.971	0.721	4.015	6.905	2.527	5.076	2.321	4.285	6.843	1.970	0.491	10.348	10.536	4.523	6.783	6.098	7.588	4.585	2.896	1.388	7.157	1.637	1.042	5.092
6490	chr17	29142076	29146602	+	0	NA	intron (NM_001002786, intron 3 of 7)	intron (NM_001002786, intron 3 of 7)	9283	NM_001002786	442827	Mm.440341	NM_001002786	ENSMUSG00000064147	Rab44	9830134C10Rik	RAB44, member RAS oncogene family	protein-coding	8.072	8.727	4.010	7.502	4.909	3.617	8.752	7.451	5.411	7.908	6.201	3.520	6.203	9.263	6.771	nan	6.713	5.997	4.016	4.241	4.092	3.493	4.723	4.018	9.431
11907	chr5	142814492	142816280	+	0	NA	5' UTR (NM_001122730, exon 2 of 28)	5' UTR (NM_001122730, exon 2 of 28)	2001	NM_178242	231861	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.751	0.444	1.012	0.409	0.768	0.389	0.257	0.600	0.338	0.619	0.570	0.504	0.186	0.297	0.294	0.515	0.679	0.532	3.639	3.373	4.095	3.046	5.591	6.005	0.637
11023	chr5	16776491	16779045	+	0	NA	Intergenic	Intergenic	223867	NM_001289461	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	4.127	0.463	0.379	3.567	1.710	0.727	5.454	4.779	4.122	3.124	2.263	2.271	5.797	5.924	7.985	6.195	5.128	6.009	3.415	1.564	0.968	3.639	1.424	1.123	3.591
2782	chr11	100485349	100488869	+	0	NA	intron (NM_001199296, intron 20 of 28)	intron (NM_001199296, intron 20 of 28)	-8629	NR_130343	102465671		NR_130343	ENSMUSG00000104854	Mir7116	mmu-mir-7116	microRNA 7116	ncRNA	3.709	4.572	1.503	3.748	1.129	0.510	1.212	2.339	2.363	2.493	1.926	0.729	1.628	2.722	2.685	3.266	nan	3.030	1.840	nan	0.829	1.680	nan	nan	4.376
13139	chr7	38741243	38742367	+	0	NA	Intergenic	Intergenic	28499	NR_073038	100861861	Mm.60620	NR_073038		Gm21276	-	predicted gene, 21276	pseudo	3.429	0.778	0.745	1.408	0.950	1.317	3.672	3.364	1.289	1.646	0.634	0.467	5.166	3.269	2.602	3.913	3.021	2.786	0.696	0.821	0.782	0.677	1.315	0.603	3.476
11580	chr5	113655158	113656438	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-5408	NM_008153	14747	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	5.623	0.947	0.510	4.839	2.749	1.372	5.302	6.722	4.327	5.437	3.102	2.418	3.801	6.103	7.330	5.190	3.515	6.480	3.886	nan	1.548	5.995	nan	2.137	6.853
5720	chr15	102072280	102080705	+	0	NA	intron (NM_145625, intron 1 of 14)	intron (NM_145625, intron 1 of 14)	2719	NM_145625	75705	Mm.290022	NM_145625	ENSMUSG00000058655	Eif4b	2310046H11Rik|AL024095|C85189|Eif4a2	eukaryotic translation initiation factor 4B	protein-coding	11.131	4.747	1.603	9.191	5.921	3.339	13.119	14.855	4.840	8.391	7.412	3.376	9.688	13.093	9.585	10.465	10.947	8.111	1.207	1.989	1.576	1.001	2.043	1.531	12.303
2037	chr11	23628564	23631087	+	0	NA	intron (NM_027860, intron 2 of 21)	intron (NM_027860, intron 2 of 21)	3806	NM_001347242	71675	Mm.48031	NM_027860	ENSMUSG00000042208	0610010F05Rik	Kiaa1841|mKIAA1841	RIKEN cDNA 0610010F05 gene	protein-coding	1.662	0.905	1.115	nan	2.185	1.839	1.891	1.792	2.435	2.325	2.960	2.948	1.925	2.153	1.904	2.981	2.164	3.489	0.550	0.807	0.415	0.575	0.665	0.339	1.346
5044	chr15	10667967	10670704	+	0	NA	intron (NM_001166408, intron 2 of 17)	intron (NM_001166408, intron 2 of 17)	44205	NM_030690	75646	Mm.212395	NM_030690	ENSMUSG00000022246	Rai14	1700008J19Rik|1700020L11Rik|Ankycorbin|Norpeg|mKIAA1334	retinoic acid induced 14	protein-coding	8.353	0.643	0.343	4.948	4.430	1.837	11.415	6.816	5.342	7.174	2.724	2.042	11.184	10.693	9.096	8.459	7.813	9.072	0.694	0.604	0.441	0.434	0.447	0.365	9.045
14005	chr8	11457454	11459971	+	0	NA	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-19217	NR_126558	102132	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	5.117	2.228	0.520	3.828	2.947	1.574	2.907	5.561	3.247	2.866	5.519	1.925	3.312	4.779	2.830	4.826	2.776	4.861	0.925	1.033	1.124	1.844	0.499	0.189	3.425
8297	chr2	62234583	62238652	+	0	NA	intron (NM_001242381, intron 6 of 25)	intron (NM_001242381, intron 6 of 25)	175614	NM_010074	13482	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding	4.729	1.128	0.367	2.732	1.689	0.807	4.198	5.981	2.498	2.444	1.326	0.364	5.471	6.073	5.490	6.245	5.896	5.112	1.472	1.368	0.319	1.177	1.024	0.489	4.280
532	chr1	122011975	122019540	+	0	NA	Intergenic	(TCC)n|Simple_repeat|Simple_repeat	-447777	NM_025860	66942	Mm.44219	NM_025860	ENSMUSG00000001674	Ddx18	2310005B10Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding	7.317	5.133	1.894	4.613	2.612	1.301	5.648	5.821	2.976	3.918	2.515	1.704	5.513	5.783	6.021	8.443	5.231	5.858	2.108	1.958	1.370	3.616	1.604	1.169	7.336
1193	chr10	25079084	25083554	+	0	NA	Intergenic	Intergenic	118851	NM_001347460	432442	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	3.932	7.828	3.455	5.580	2.329	1.715	3.310	2.433	2.786	3.995	2.069	2.584	2.151	3.194	3.812	4.138	2.366	3.651	1.724	1.289	1.735	2.128	1.389	1.315	3.495
2455	chr11	74802805	74804948	+	0	NA	exon (NM_026197, exon 7 of 10)	exon (NM_026197, exon 7 of 10)	-27048	NM_010813	17428	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	3.301	1.360	0.651	3.928	1.798	0.641	2.018	3.148	1.630	2.026	0.841	1.203	1.598	2.073	nan	2.836	2.281	2.900	1.179	1.704	nan	2.125	0.874	0.268	3.409
3963	chr13	35156034	35159173	+	0	NA	Intergenic	L1Md_A|LINE|L1	-24020	NR_045616	100503727	Mm.32214	NR_045616	ENSMUSG00000102099	1700011B04Rik	-	RIKEN cDNA 1700011B04 gene	ncRNA	3.787	nan	0.376	2.459	1.616	0.690	nan	3.203	nan	3.353	0.966	0.541	2.359	5.213	2.113	nan	0.832	2.542	0.599	0.461	0.312	0.392	0.490	0.302	nan
13763	chr7	134247729	134249949	+	0	NA	Intergenic	L1_Mur3|LINE|L1	-23742	NM_007400	11489	Mm.439714	NM_007400	ENSMUSG00000054555	Adam12	Mltna	a disintegrin and metallopeptidase domain 12 (meltrin alpha)	protein-coding	0.971	nan	0.610	1.313	0.434	0.137	0.746	1.215	nan	1.083	0.734	0.411	1.401	0.908	2.195	1.958	0.872	2.162	3.715	2.984	1.676	7.250	1.934	1.537	1.612
55	chr1	23194062	23199162	+	0	NA	Intergenic	Intergenic	-75657	NR_029533	387225		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	9.133	nan	0.804	4.623	3.886	2.721	5.640	5.252	5.113	4.301	6.251	3.791	7.398	6.031	5.954	10.366	7.058	6.395	0.920	0.986	0.854	1.065	1.407	0.821	5.182
3592	chr12	87418616	87420452	+	0	NA	Intergenic	Intergenic	18223	NR_037228	100526546		NR_037228	ENSMUSG00000105428	Mir3068	mir-3068|mmu-mir-3068	microRNA 3068	ncRNA	6.797	5.675	3.350	7.044	4.415	1.898	4.656	2.639	2.948	5.123	4.729	2.843	2.852	4.210	4.342	5.512	6.455	4.262	8.292	5.320	4.419	10.245	7.510	7.274	8.746
13640	chr7	120185157	120186732	+	0	NA	TTS (NM_016669)	TTS (NM_016669)	12086	NM_028085	72074	Mm.23165	NM_028085	ENSMUSG00000030909	Anks4b	2010013E14Rik|AI956809|Harp	ankyrin repeat and sterile alpha motif domain containing 4B	protein-coding	2.098	0.475	0.451	0.969	2.477	1.763	2.292	2.385	1.157	2.268	1.346	0.992	3.055	4.034	1.728	1.222	2.503	1.216	0.809	0.728	0.589	0.394	0.506	0.718	1.557
1681	chr10	98663185	98667812	+	0	NA	Intergenic	Intergenic	-249654	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	9.141	3.364	2.261	4.472	5.345	3.108	8.238	7.014	4.978	5.277	nan	3.431	4.944	7.899	7.154	5.885	6.140	6.124	nan	2.619	1.830	nan	4.043	3.395	7.927
6134	chr16	55901643	55907889	+	0	NA	3' UTR (NM_028815, exon 11 of 11)	3' UTR (NM_028815, exon 11 of 11)	-9487	NM_001134457	385658	Mm.310635	NM_001134457	ENSMUSG00000075033	Nxpe3	Fam55c|Gm1752|Gm611	neurexophilin and PC-esterase domain family, member 3	protein-coding	0.619	11.038	7.538	0.616	0.409	0.312	0.461	0.446	0.520	0.382	0.338	0.516	0.248	0.316	0.395	nan	0.518	0.583	nan	1.117	0.777	0.534	0.653	0.490	0.524
12845	chr6	145692847	145696746	+	0	NA	Intergenic	Intergenic	78833	NM_009449	22147	Mm.270295	NM_009449	ENSMUSG00000067338	Tuba3b	M[a]7|Tuba7	tubulin, alpha 3B	protein-coding	4.405	1.512	0.661	6.053	3.908	3.736	2.878	3.686	2.286	5.311	1.471	1.685	3.172	6.334	3.868	5.747	2.665	5.365	2.603	nan	2.065	nan	1.845	2.733	6.128
11291	chr5	66245081	66259512	+	0	NA	Intergenic	RMER17A2|LTR|ERVK	-7602	NM_001302833	70918	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	2.163	13.834	7.981	1.678	0.933	0.505	0.798	0.676	1.232	1.344	0.909	0.587	0.670	0.935	1.141	1.196	1.062	1.275	0.885	1.304	0.985	nan	0.797	0.577	1.229
14498	chr8	97391847	97397285	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	-848593	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	4.087	1.239	0.280	3.019	1.455	0.960	3.317	5.777	2.272	2.685	0.692	1.029	4.712	2.873	4.046	7.745	2.798	4.547	1.222	0.786	0.851	1.823	0.722	0.660	6.739
6434	chr17	26708009	26709849	+	0	NA	Intergenic	PB1|SINE|Alu	-6721	NM_029870	77128	Mm.275414	NM_029870	ENSMUSG00000048249	Crebrf	A930001N09Rik|LRF	CREB3 regulatory factor	protein-coding	4.373	5.534	2.729	4.019	4.069	2.775	1.819	4.660	3.145	2.137	2.373	1.987	1.171	2.945	2.549	2.144	2.026	2.370	0.822	1.147	1.566	1.483	0.548	0.472	2.273
10574	chr4	129495119	129501941	+	0	NA	Intergenic	B3|SINE|B2	7340	NM_001085491	68233	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	8.446	11.911	5.983	7.738	7.440	4.780	7.319	7.534	5.756	9.073	6.606	4.348	6.862	9.435	nan	8.692	4.836	8.002	4.174	3.235	3.100	3.928	2.785	3.393	8.512
395	chr1	88417749	88426540	+	0	NA	intron (NM_029269, intron 7 of 7)	B3A|SINE|B2	15134	NM_029269	75396	Mm.173058	NM_029269	ENSMUSG00000026295	Spp2	0610038O04Rik|pp-24|spp24	secreted phosphoprotein 2	protein-coding	10.731	12.883	3.575	11.139	4.481	3.148	8.310	6.587	5.746	11.295	7.647	4.283	8.520	8.889	10.791	14.449	7.634	10.391	7.433	3.379	3.726	9.173	4.636	5.178	15.781
13191	chr7	52895912	52901402	+	0	NA	Intergenic	L1_Mus1|LINE|L1	-882941	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	3.271	3.127	1.225	3.194	1.785	0.962	3.238	6.925	2.252	3.630	2.298	1.761	3.535	6.213	4.786	5.268	4.007	3.836	5.761	4.226	2.697	5.724	4.464	3.632	5.006
10172	chr4	63004394	63007796	+	0	NA	intron (NM_028326, intron 1 of 14)	intron (NM_028326, intron 1 of 14)	40521	NM_028326	72701	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	4.252	1.303	0.403	3.581	3.342	0.938	4.360	6.439	4.404	5.508	6.347	2.532	5.216	9.520	6.574	7.595	2.802	4.319	3.325	0.651	0.252	nan	nan	0.307	7.193
8910	chr2	158540118	158552097	+	0	NA	intron (NM_001145015, intron 11 of 14)	B3|SINE|B2	33311	NM_001145015	545481	Mm.125371	NM_001145015	ENSMUSG00000074625	Arhgap40	C20orf95|Gm14203|OTTMUSG00000015933	Rho GTPase activating protein 40	protein-coding	nan	12.697	5.958	2.908	1.036	0.584	0.854	0.563	nan	nan	0.557	0.726	nan	nan	1.039	1.317	1.023	nan	nan	1.440	1.506	0.915	0.866	0.750	nan
5848	chr16	18601076	18605884	+	0	NA	Intergenic	MT2A|LTR|ERVL	-12809	NM_001285472	21380	Mm.295194	NM_011532	ENSMUSG00000009097	Tbx1	-	T-box 1	protein-coding	0.437	0.522	0.391	0.951	0.248	0.097	0.391	0.675	0.490	nan	0.432	0.421	0.207	0.740	0.669	nan	0.384	0.735	4.348	1.408	1.483	5.372	2.483	1.908	1.005
2295	chr11	61421094	61422502	+	0	NA	Intergenic	IAPEz-int|LTR|ERVK	32194	NM_009548	22671	Mm.89201	NM_009548	ENSMUSG00000010086	Rnf112	ZNF179|Zfp179|bfp|neurolastin	ring finger protein 112	protein-coding	1.950	0.866	1.315	3.026	8.010	6.145	2.860	1.918	2.124	2.168	3.764	6.603	2.366	3.951	0.872	0.929	1.434	1.790	nan	1.718	0.783	0.472	1.445	0.741	nan
3584	chr12	87115298	87122518	+	0	NA	intron (NM_153415, intron 12 of 20)	intron (NM_153415, intron 12 of 20)	-16369	NM_001294308	64242	Mm.41395	NM_022414	ENSMUSG00000021032	Ngb	-	neuroglobin	protein-coding	4.677	0.563	0.366	1.671	2.412	1.321	5.835	1.341	2.575	3.149	0.528	0.464	5.985	4.809	4.206	nan	4.683	4.561	0.487	0.494	0.526	0.557	0.497	0.512	nan
9016	chr2	167173442	167177645	+	0	NA	intron (NM_008420, intron 1 of 1)	intron (NM_008420, intron 1 of 1)	13275	NM_008420	16500	Mm.205341	NM_008420	ENSMUSG00000050556	Kcnb1	Kcr1-1|Kv2.1|Shab	potassium voltage gated channel, Shab-related subfamily, member 1	protein-coding	4.832	8.505	3.485	5.933	3.859	2.800	3.337	3.976	3.146	5.950	2.716	2.238	2.992	nan	3.945	3.875	2.289	3.946	nan	2.340	2.998	4.348	3.408	4.426	nan
1550	chr10	84174247	84176475	+	0	NA	Intergenic	MERVL-int|LTR|ERVL	265110	NM_001004363	77976	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	3.658	1.125	0.707	2.602	1.860	1.014	5.212	1.197	3.430	4.588	2.166	1.345	4.977	4.656	3.834	5.304	4.332	4.601	1.437	0.875	0.762	2.365	nan	1.446	5.263
12109	chr6	30522009	30525316	+	0	NA	Intergenic	RSINE1|SINE|B4	11376	NM_029373	75647	Mm.46117	NM_027073	ENSMUSG00000029784	Ssmem1	1700016K02Rik|1700025E21Rik	serine-rich single-pass membrane protein 1	protein-coding	0.562	0.440	0.466	0.792	0.490	0.111	0.511	0.466	1.087	1.446	0.478	0.192	0.279	0.331	1.285	1.787	0.860	nan	nan	0.872	0.384	5.277	0.843	0.549	1.285
11621	chr5	117565132	117566198	+	0	NA	intron (NM_001312914, intron 4 of 19)	(CA)n|Simple_repeat|Simple_repeat	151663	NM_001312914	333050	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	13.148	17.222	3.121	14.352	6.377	5.199	13.901	10.475	8.472	21.581	12.195	4.952	8.546	13.394	12.464	14.538	8.125	11.522	5.269	nan	3.973	7.719	4.624	6.947	18.670
9954	chr4	15994679	15996480	+	0	NA	Intergenic	Intergenic	18298	NM_145950	209212	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	2.546	0.452	0.574	1.986	1.867	0.813	3.021	4.778	3.390	2.787	1.732	1.069	4.075	3.631	2.717	3.036	3.169	2.911	1.854	1.617	0.926	0.938	2.717	2.580	2.189
15719	chrX	45384905	45388357	+	0	NA	Intergenic	RMER17A2|LTR|ERVK	295727	NM_026841	68800	Mm.336041	NM_026841	ENSMUSG00000037086	Prr32	1110059M19Rik	proline rich 32	protein-coding	1.014	0.434	0.098	0.536	0.406	0.133	1.977	1.433	0.347	1.057	0.427	0.203	0.877	2.319	2.655	2.382	1.517	0.772	1.397	0.772	0.717	1.844	0.537	0.311	5.577
7982	chr2	17630828	17634168	+	0	NA	intron (NM_028757, intron 2 of 6)	intron (NM_028757, intron 2 of 6)	68984	NR_105847	102465964		NR_105847	ENSMUSG00000099161	Mir6419	Gm27713|mmu-mir-6419	microRNA 6419	ncRNA	3.615	0.677	0.562	3.304	3.622	2.141	1.581	1.656	3.400	3.955	2.377	0.924	2.455	3.925	1.367	2.719	2.462	3.795	3.059	3.431	1.985	2.155	3.114	2.795	3.500
2533	chr11	79996959	79999136	+	0	NA	intron (NM_001163018, intron 3 of 14)	B1_Mur1|SINE|Alu	4941	NM_199196	52615	Mm.283410	NM_199196	ENSMUSG00000017548	Suz12	2610028O16Rik|AI195385|AU016842|AW536442|D11Ertd530e|mKIAA0160	suppressor of zeste 12 homolog (Drosophila)	protein-coding	7.794	8.908	2.872	8.916	3.863	2.572	7.869	7.646	6.302	8.590	3.924	3.167	8.603	8.594	10.292	10.515	7.804	8.875	3.060	1.830	nan	3.734	2.204	2.251	10.853
12973	chr7	20042712	20044686	+	0	NA	intron (NM_194058, intron 6 of 9)	B3|SINE|B2	35676	NM_194058	243874	Mm.277114	NM_194058	ENSMUSG00000060508	Nlrp9b	Nalp-delta|Nalp9b|Nlrp9	NLR family, pyrin domain containing 9B	protein-coding	12.138	7.066	3.761	9.766	10.585	7.184	9.239	9.413	5.043	11.210	10.766	5.409	3.910	6.595	6.496	7.574	8.001	7.527	3.615	7.720	6.974	4.903	5.804	6.238	13.451
12411	chr6	87611130	87614098	+	0	NA	Intergenic	Intergenic	-21913	NM_021381	58182	Mm.333226	NM_021381	ENSMUSG00000049409	Prokr1	EG-VEGFR1|Gpr73|Pkr1	prokineticin receptor 1	protein-coding	5.723	0.517	0.580	nan	3.088	1.460	2.705	2.697	2.507	4.583	0.891	0.455	4.888	4.606	2.595	2.266	3.269	nan	nan	0.375	0.433	0.401	0.555	0.467	2.279
9187	chr3	27502680	27508418	+	0	NA	intron (NM_173182, intron 7 of 25)	intron (NM_173182, intron 7 of 25)	79446	NR_037275	100526525		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	3.789	1.208	0.743	nan	2.168	1.455	nan	1.533	3.674	3.894	3.458	2.652	3.489	3.208	nan	3.495	2.142	4.135	1.556	1.361	0.971	2.616	1.022	0.827	6.330
7454	chr19	3627537	3640229	+	0	NA	intron (NM_008513, intron 5 of 22)	B2_Mm2|SINE|B2	52681	NM_008513	16973	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	3.994	1.105	0.442	3.445	2.158	0.993	9.007	7.236	nan	4.345	2.212	2.071	5.424	6.985	5.707	nan	5.203	4.469	0.765	0.765	0.713	1.476	1.129	0.830	9.782
4434	chr13	114412076	114414046	+	0	NA	Intergenic	Lx|LINE|L1	-24967	NM_010887	17993	Mm.253142	NM_010887	ENSMUSG00000021764	Ndufs4	6720411N02Rik|C1-18k	NADH dehydrogenase (ubiquinone) Fe-S protein 4	protein-coding	4.597	0.777	0.761	3.617	6.425	6.143	2.115	3.770	3.504	4.834	1.661	1.537	3.071	5.596	3.265	3.782	1.906	3.887	0.832	0.885	0.651	1.023	0.451	0.586	3.344
14828	chr8	129494164	129498338	+	0	NA	Intergenic	Intergenic	232621	NR_144501	102635552		NM_001346808		Gm32856	-	predicted gene, 32856	protein-coding	7.478	nan	1.833	nan	2.201	1.602	nan	8.109	1.972	2.294	7.233	3.017	4.039	5.076	nan	4.748	4.387	nan	nan	1.536	1.834	nan	1.746	nan	nan
13840	chr7	141451719	141454919	+	0	NA	Intergenic	B3A|SINE|B2	-1869	NM_025802	66853	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	8.084	nan	0.284	3.746	4.570	1.403	7.459	6.818	5.936	7.051	6.159	2.188	9.857	7.479	6.143	6.776	6.489	6.889	0.816	1.259	0.353	1.723	0.388	0.490	8.036
10044	chr4	45766738	45771999	+	0	NA	Intergenic	ID_B1|SINE|B4	-5145	NR_046068	100040567	Mm.490816	NR_046068	ENSMUSG00000085876	Gm12409	OTTMUSG00000006726	predicted gene 12409	ncRNA	0.356	nan	0.458	0.539	0.151	0.094	0.340	0.388	0.291	0.332	0.316	0.162	0.188	0.212	0.369	0.605	0.244	nan	1.351	1.241	0.999	4.588	0.888	0.457	0.701
13099	chr7	31204068	31208894	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	44123	NR_046062	100038516	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322|ENSMUSG00000074193	predicted gene 10640	ncRNA	7.465	12.672	4.886	6.495	2.427	1.504	4.597	7.018	3.914	5.341	3.422	1.803	5.688	6.283	7.110	8.024	5.600	6.160	3.099	2.888	2.116	2.900	2.322	1.465	10.167
6038	chr16	34369319	34373553	+	0	NA	intron (NM_001164268, intron 3 of 33)	intron (NM_001164268, intron 3 of 33)	142591	NM_001164268	545156	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	3.441	0.847	0.330	6.758	2.657	1.021	2.500	5.651	3.353	3.606	0.734	0.654	4.516	6.289	3.968	3.884	1.303	4.261	3.443	0.771	0.344	2.408	1.595	0.883	nan
12910	chr7	4857398	4859725	+	0	NA	intron (NM_026158, intron 1 of 5)	RLTR14-int|LTR|ERV1	7618	NM_026158	67441	Mm.41385	NM_026158	ENSMUSG00000052605	Isoc2b	0610042E07Rik|AI553388|Isoc2	isochorismatase domain containing 2b	protein-coding	0.503	0.548	0.545	0.486	0.376	0.252	0.382	0.591	0.469	0.339	0.382	0.253	0.232	0.408	0.363	0.638	0.488	0.549	3.178	1.062	0.763	0.801	6.322	4.358	0.686
13703	chr7	127035477	127040390	+	0	NA	intron (NM_145588, intron 1 of 13)	intron (NM_145588, intron 1 of 13)	4487	NM_145588	110033	Mm.286488	NM_145588	ENSMUSG00000030677	Kif22	AU021460|C81217|Kid|Kif22a	kinesin family member 22	protein-coding	8.804	4.828	2.260	6.786	6.139	3.100	5.615	9.534	4.255	5.612	3.015	2.248	4.696	9.004	6.105	7.405	7.284	7.155	2.624	2.289	1.821	2.567	2.824	2.290	8.907
13545	chr7	112787994	112791900	+	0	NA	intron (NM_009346, intron 2 of 12)	intron (NM_009346, intron 2 of 12)	30563	NM_001166585	21676	Mm.24685	NM_009346	ENSMUSG00000055320	Tead1	2610024B07Rik|B230114H05Rik|Gtrgeo5|TEAD-1|TEF-1|Tcf13|mTEF-1	TEA domain family member 1	protein-coding	9.439	5.752	1.860	7.451	2.886	1.250	7.960	9.173	5.286	6.029	4.248	2.629	7.792	8.087	8.433	8.907	5.946	nan	3.602	2.136	2.055	3.724	2.363	2.226	11.651
5965	chr16	29682643	29683872	+	0	NA	Intergenic	Intergenic	103923	NM_001199177	74143	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	1.241	0.512	0.102	1.485	1.266	0.267	1.496	2.147	1.444	1.780	0.237	0.409	nan	3.147	3.384	2.888	1.178	1.621	1.509	1.365	0.805	2.617	nan	0.821	2.047
3348	chr12	57371894	57404842	+	0	NA	intron (NM_001164370, intron 8 of 9)	L1_Mus4|LINE|L1	157753	NM_008259	15375	Mm.4578	NM_008259	ENSMUSG00000035451	Foxa1	Hnf-3a|Hnf3a|Tcf-3a|Tcf3a	forkhead box A1	protein-coding	10.688	nan	0.575	4.695	6.630	3.899	10.341	7.002	8.632	10.319	2.160	1.785	12.016	12.924	nan	nan	10.917	nan	3.684	2.705	1.917	3.444	1.966	1.549	11.943
1908	chr11	4059713	4062028	+	0	NA	Intergenic	Intergenic	-3983	NM_001029937	380683	Mm.296806	NM_001029937	ENSMUSG00000054986	Sec14l3	1110069O07Rik	SEC14-like lipid binding 3	protein-coding	5.566	7.239	2.408	5.455	2.959	1.311	5.019	3.990	3.717	5.189	3.487	1.659	3.861	6.730	6.379	7.538	3.895	6.086	3.362	nan	1.556	4.752	2.017	2.430	6.544
15327	chr9	77564213	77574150	+	0	NA	Intergenic	Intergenic	-24329	NM_001146048	214345	Mm.28534	NM_172528	ENSMUSG00000032352	Lrrc1	A430093J20Rik|AU016091|D030059I21|mKIAA4018	leucine rich repeat containing 1	protein-coding	3.790	0.763	0.604	1.593	1.288	0.607	3.322	4.423	3.844	3.640	2.172	1.403	6.193	3.768	3.861	5.008	3.130	3.911	0.863	nan	0.432	0.799	0.465	0.390	nan
11439	chr5	92894787	92897424	+	0	NA	intron (NM_001077595, intron 1 of 9)	intron (NM_001077595, intron 1 of 9)	-1888	NM_001077596	27428	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	6.168	2.474	2.330	3.856	6.739	4.932	6.178	3.879	5.364	6.337	4.343	3.418	4.413	5.813	4.136	4.500	3.850	5.068	1.220	1.995	2.416	1.002	1.343	1.443	3.925
4291	chr13	95207640	95215750	+	0	NA	intron (NM_001170669, intron 1 of 18)	intron (NM_001170669, intron 1 of 18)	11355	NM_001170669	218461	Mm.100167	NM_172263	ENSMUSG00000021684	Pde8b	B230331L10Rik|C030047E14Rik	phosphodiesterase 8B	protein-coding	5.050	0.664	0.615	3.458	4.627	2.725	4.895	5.041	5.450	4.979	3.166	1.542	5.513	9.141	5.363	5.346	3.732	nan	0.599	0.703	0.506	0.516	0.606	0.564	6.210
6480	chr17	28504785	28508304	+	0	NA	Intergenic	B4A|SINE|B4	-20395	NM_010220	14229	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	1.802	0.680	0.785	1.332	4.355	3.382	2.957	1.509	1.874	2.082	0.931	1.128	1.540	3.786	1.675	nan	1.800	1.684	0.882	0.618	1.292	0.567	0.750	1.115	1.901
13447	chr7	100022859	100025889	+	0	NA	intron (NM_133709, intron 5 of 10)	intron (NM_133709, intron 5 of 10)	14456	NM_001291320	69121	Mm.285295	NM_133709	ENSMUSG00000030732	Chrdl2	1810022C01Rik|Chl2	chordin-like 2	protein-coding	9.136	12.939	5.690	7.686	4.126	2.059	6.064	7.381	3.452	6.178	4.546	2.210	5.720	7.542	7.286	nan	6.336	6.447	nan	3.312	2.044	3.832	4.049	2.520	9.890
10912	chr4	149775154	149781194	+	0	NA	Intergenic	B3|SINE|B2	-3907	NM_027460	70556	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	2.370	nan	1.082	2.443	1.700	0.894	2.188	3.827	2.501	2.581	1.487	1.724	2.385	2.870	2.309	2.828	1.509	3.029	5.539	2.085	1.114	6.851	7.090	4.095	2.004
1098	chr10	12435579	12437823	+	0	NA	intron (NM_011682, intron 63 of 73)	intron (NM_011682, intron 63 of 73)	425034	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	4.004	0.735	0.534	3.136	1.629	1.028	2.069	2.028	3.147	3.431	0.737	0.625	2.614	4.013	3.519	5.001	3.865	6.448	1.006	0.690	0.227	0.997	0.963	0.599	4.435
1718	chr10	110979450	110982956	+	0	NA	intron (NM_172554, intron 3 of 16)	intron (NM_172554, intron 3 of 16)	28863	NM_172554	320150	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|Hip14	zinc finger, DHHC domain containing 17	protein-coding	3.963	1.360	0.910	2.757	3.797	2.265	4.832	4.579	4.177	3.561	3.953	5.291	3.366	4.584	3.824	3.036	2.113	3.718	0.956	1.262	0.590	0.808	0.899	0.593	3.048
2792	chr11	100827596	100832629	+	0	NA	intron (NM_001113563, intron 1 of 18)	intron (NM_001113563, intron 1 of 18)	-7542	NM_011489	20851	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	6.018	nan	0.536	11.509	3.784	2.399	4.730	5.374	5.093	7.808	5.451	3.306	5.166	7.392	6.774	8.590	3.958	8.111	1.363	nan	1.331	2.130	nan	nan	9.385
15398	chr9	96293365	96300864	+	0	NA	intron (NM_001184706, intron 7 of 12)	intron (NM_001184706, intron 7 of 12)	37866	NM_001184710	211586	Mm.17977	NM_178667	ENSMUSG00000032411	Tfdp2	1110029I05Rik|A330080J22Rik|DP-3|DP3	transcription factor Dp 2	protein-coding	5.562	3.687	2.074	4.148	4.515	2.917	2.806	4.565	4.336	4.392	9.050	3.879	3.470	5.204	3.059	3.469	3.378	4.120	0.898	1.525	1.321	0.771	1.168	0.654	4.193
8082	chr2	30106803	30109505	+	0	NA	intron (NM_001290503, intron 6 of 15)	intron (NM_001290503, intron 6 of 15)	-14519	NM_001037762	66220	Mm.22538	NM_025428	ENSMUSG00000015335	Zdhhc12	1190004A01Rik	zinc finger, DHHC domain containing 12	protein-coding	3.349	6.851	1.145	5.180	1.424	0.947	3.351	6.674	3.396	2.778	5.113	5.543	4.377	4.067	4.732	5.282	1.589	4.643	0.949	0.751	0.874	1.039	0.384	0.323	3.417
13056	chr7	29132616	29133762	+	0	NA	Intergenic	B2_Mm1t|SINE|B2	-1744	NM_001174155	233046	Mm.465324	NM_145149	ENSMUSG00000030589	Rasgrp4	-	RAS guanyl releasing protein 4	protein-coding	3.752	1.617	1.686	1.399	3.827	3.117	3.186	5.310	1.536	1.564	1.365	0.817	3.020	3.961	2.223	1.976	2.590	2.055	0.605	1.017	0.999	1.069	0.447	1.298	2.352
6748	chr17	56393632	56397210	+	0	NA	intron (NM_172132, intron 13 of 22)	intron (NM_172132, intron 13 of 22)	23488	NR_105943	102465590		NR_105943	ENSMUSG00000098339	Mir6977	Gm27922|mmu-mir-6977	microRNA 6977	ncRNA	nan	nan	1.559	6.101	1.909	2.478	7.081	4.832	4.614	5.781	2.872	2.320	5.551	5.995	7.677	8.727	5.596	5.245	2.328	1.202	1.485	3.370	1.733	2.143	8.943
11298	chr5	66453507	66455034	+	0	NA	intron (NM_001310626, intron 4 of 15)	intron (NM_001310626, intron 4 of 15)	-116605	NM_001201416	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	2.577	1.480	0.872	2.275	3.015	0.864	1.707	2.556	1.972	2.506	1.378	1.155	1.764	4.056	2.482	2.952	1.822	2.983	2.288	2.481	1.264	nan	1.080	0.312	2.905
11187	chr5	36922772	36925411	+	0	NA	intron (NM_172994, intron 2 of 8)	intron (NM_172994, intron 2 of 8)	-47212	NR_045505	71054	Mm.444807	NR_045505	ENSMUSG00000087487	Ppp2r2cos	4933401P06Rik	protein phosphatase 2, regulatory subunit B, gamma, opposite strand	ncRNA	6.254	7.924	2.690	6.894	3.813	1.976	7.060	7.340	4.809	7.829	4.604	2.429	5.465	8.620	nan	6.746	nan	6.057	3.929	2.142	2.178	3.631	2.798	2.759	9.488
9849	chr3	143671186	143676673	+	0	NA	intron (NR_040405, intron 1 of 2)	RMER15|LTR|ERVL	38214	NR_040405	621809	Mm.360134	NR_040405	ENSMUSG00000105279	Gm6260	EG621809	predicted gene 6260	ncRNA	0.572	1.323	1.001	0.491	0.227	0.069	0.818	0.486	0.523	0.579	0.459	0.941	0.430	0.461	0.572	0.748	0.567	0.788	2.749	1.620	0.870	5.800	1.269	0.888	0.410
3003	chr11	116364005	116366922	+	0	NA	intron (NM_027258, intron 2 of 18)	intron (NM_027258, intron 2 of 18)	-30109	NM_008240	15223	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	1.711	nan	0.699	2.565	3.769	4.222	2.050	3.639	2.931	nan	1.618	1.291	4.474	5.693	2.223	1.791	1.584	2.574	0.634	nan	1.755	0.919	0.503	1.005	2.262
11518	chr5	105567601	105571164	+	0	NA	intron (NM_133897, intron 2 of 3)	intron (NM_133897, intron 2 of 3)	49911	NM_133897	100604	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	3.538	6.857	5.247	3.226	2.668	1.840	nan	0.808	2.073	2.001	0.817	0.861	1.258	1.329	1.505	1.737	2.034	2.548	nan	1.703	1.377	0.650	1.340	0.936	2.049
11168	chr5	35477347	35481811	+	0	NA	Intergenic	Intergenic	46047	NM_153107	242939	Mm.108557	NM_153107	ENSMUSG00000036596	Cpz	AV136066	carboxypeptidase Z	protein-coding	4.505	0.500	0.367	3.998	5.957	3.105	3.363	3.479	5.587	8.502	1.081	1.399	4.512	10.042	nan	5.199	nan	nan	1.338	0.795	0.646	1.411	1.269	0.483	3.581
14757	chr8	126273847	126278435	+	0	NA	Intergenic	Intergenic	-22438	NM_175434	210027	Mm.405238	NM_175434	ENSMUSG00000057060	Slc35f3	B230375D17Rik	solute carrier family 35, member F3	protein-coding	3.383	nan	1.341	2.206	3.293	2.379	2.920	6.196	2.605	2.466	2.430	1.768	3.615	5.663	4.436	3.239	1.930	2.178	nan	1.446	1.897	3.922	1.633	nan	2.805
6242	chr16	94629303	94630877	+	0	NA	intron (NM_001347731, intron 1 of 10)	(TAGTG)n|Simple_repeat|Simple_repeat	18671	NM_001347731	13548	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|ENSMUSG00000074897|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	4.022	0.911	0.338	0.841	2.136	0.683	3.400	2.620	nan	1.859	0.363	0.649	3.681	3.968	2.445	2.744	3.102	3.483	nan	0.952	0.248	0.474	0.772	0.429	1.953
7830	chr19	46574553	46586849	+	0	NA	intron (NM_053196, intron 1 of 11)	MTE-int|LTR|ERVL-MaLR	7336	NM_053196	94279	Mm.296837	NM_053196	ENSMUSG00000025036	Sfxn2	C79732|F630107H02Rik	sideroflexin 2	protein-coding	11.638	11.304	3.609	11.794	7.043	4.507	12.338	12.483	7.245	12.936	8.466	5.845	8.783	14.250	11.157	11.843	10.202	11.190	3.488	3.322	3.376	5.650	5.225	5.540	18.261
9731	chr3	116668019	116672656	+	0	NA	TTS (NM_144902)	TTS (NM_144902)	-7660	NM_008246	15247	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	3.644	0.809	0.483	4.833	1.785	0.872	2.456	1.769	4.671	3.553	5.835	3.096	4.690	5.512	4.083	nan	1.795	3.107	7.207	3.123	2.132	4.876	nan	4.294	2.716
15825	chrX	137513368	137514907	+	0	NA	Intergenic	RLTR40|LTR|ERVK	-56617	NM_030688	60367	Mm.328321	NM_030688	ENSMUSG00000059203	Il1rapl2	-	interleukin 1 receptor accessory protein-like 2	protein-coding	4.234	0.978	0.555	2.342	2.527	0.556	2.445	3.606	1.768	3.041	0.678	0.613	2.946	4.184	2.957	3.705	2.317	3.459	0.408	0.381	0.430	0.617	0.270	0.018	2.327
2665	chr11	94788517	94790766	+	0	NA	Intergenic	MT2B1|LTR|ERVL	-6938	NM_001163172	544806	Mm.379774	NM_001034896	ENSMUSG00000075610	Tmem92	AU016430|Tmem92-ps	transmembrane protein 92	protein-coding	3.594	nan	0.669	3.608	1.903	1.355	2.021	4.157	2.295	3.525	1.015	0.750	2.762	5.138	4.527	4.201	1.268	4.192	1.603	nan	0.719	1.269	nan	nan	5.247
5018	chr15	6673787	6678450	+	0	NA	Intergenic	L1_Mus1|LINE|L1	-32263	NM_030168	78757	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	4.983	0.918	0.639	2.300	7.763	4.938	7.604	12.707	5.471	7.198	2.188	3.061	7.632	8.690	6.049	3.742	4.455	5.932	1.270	0.769	0.736	0.391	0.724	0.718	2.190
4609	chr14	41731185	41752543	+	0	NA	Intergenic	Intergenic	30540	NM_001244671	100042055	Mm.429109	NM_001244671	ENSMUSG00000095226	Gm10377	ENSMUSG00000072606	predicted gene 10377	protein-coding	6.567	4.366	2.144	3.830	2.963	1.435	5.584	9.239	3.938	4.488	3.888	2.569	6.419	6.904	5.551	6.419	4.286	4.876	1.449	1.627	1.097	1.725	1.249	0.796	7.396
14995	chr9	43274519	43278264	+	0	NA	intron (NM_001243261, intron 2 of 2)	Lx7|LINE|L1	16512	NM_001243261	235302	Mm.135745	NM_001243261	ENSMUSG00000095385	D630033O11Rik	Gm588	RIKEN cDNA D630033O11 gene	protein-coding	0.454	0.548	0.323	0.338	0.153	0.067	0.420	0.748	0.177	0.258	0.375	0.094	0.234	0.229	nan	nan	0.274	0.446	5.086	4.682	3.186	9.126	6.197	3.858	nan
7272	chr18	58036839	58043239	+	0	NA	intron (NM_010181, intron 49 of 64)	intron (NM_010181, intron 49 of 64)	161361	NM_009194	20496	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	5.613	nan	1.923	5.380	3.573	2.956	8.242	7.367	5.117	9.431	2.692	3.185	8.327	6.513	7.974	7.913	6.640	7.404	nan	1.369	2.274	nan	1.992	3.407	10.669
15052	chr9	48514179	48518366	+	0	NA	Intergenic	Intergenic	20929	NM_001004191	434402	Mm.386950	NM_001004191	ENSMUSG00000042293	Gm5617	EG434402	predicted gene 5617	protein-coding	4.512	1.997	0.826	6.058	3.552	1.856	1.338	5.080	3.641	5.681	1.007	0.689	2.904	5.521	nan	3.391	1.812	7.468	0.941	0.977	0.586	nan	0.867	0.466	4.313
14903	chr9	21426261	21432796	+	0	NA	intron (NM_007871, intron 1 of 19)	ID_B1|SINE|B4	4620	NM_001039520	13430	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	1.167	7.994	6.744	1.373	1.098	1.019	0.719	1.013	1.224	0.781	1.000	0.606	0.591	0.983	0.959	0.945	0.905	1.040	2.480	3.175	3.071	2.836	2.631	2.748	1.103
15141	chr9	59500621	59512674	+	0	NA	Intergenic	ORR1A3-int|LTR|ERVL-MaLR	18854	NM_178388	73893	Mm.216135	NM_178388	ENSMUSG00000049526	Tmem202	4930425N13Rik	transmembrane protein 202	protein-coding	7.651	5.572	2.243	4.493	4.441	2.876	5.075	7.213	4.832	5.883	6.653	4.551	4.700	7.730	5.969	6.167	3.570	5.963	3.226	2.434	1.737	3.372	2.184	1.623	6.984
13116	chr7	31785259	31788577	+	0	NA	Intergenic	L1Md_T|LINE|L1	74253	NM_001270542	626305	Mm.454021	NM_001270542	ENSMUSG00000078759	Scgb1b7	ABPA7_A29|Abpa29|Abpa7|EG626305|Gm6662	secretoglobin, family 1B, member 7	protein-coding	6.685	10.187	4.197	5.044	3.373	2.604	2.060	3.260	3.902	4.151	4.033	4.321	1.979	3.442	2.782	3.463	2.401	4.214	2.806	3.095	2.025	3.768	1.551	1.382	4.673
13386	chr7	87966893	87974425	+	0	NA	intron (NM_001143834, intron 4 of 10)	RMER17D|LTR|ERVK	-307426	NM_009982	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	3.982	0.973	1.089	2.002	4.219	2.933	4.483	7.071	nan	2.427	3.526	3.270	4.541	4.755	3.923	nan	nan	nan	1.108	1.141	0.991	nan	0.925	0.750	nan
14262	chr8	66846466	66850144	+	0	NA	Intergenic	Intergenic	-11912	NM_001163564	234344	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 ribonucleoprotein	protein-coding	0.619	0.619	1.063	0.294	0.252	0.193	0.213	0.689	0.562	0.569	0.462	0.545	0.212	0.371	0.358	0.586	0.656	0.673	nan	8.892	4.068	10.930	2.085	1.413	nan
15565	chr9	118530520	118533146	+	0	NA	intron (NM_018748, intron 5 of 23)	PB1D10|SINE|Alu	25515	NM_018748	54214	Mm.10409	NM_018748	ENSMUSG00000038708	Golga4	AI225887|AU019508|Olp-1	golgi autoantigen, golgin subfamily a, 4	protein-coding	2.789	0.870	0.197	3.425	1.250	0.817	1.725	3.905	3.153	3.461	0.585	0.356	2.407	5.358	3.040	3.890	2.103	4.290	0.980	0.925	0.730	1.650	nan	0.880	5.977
1269	chr10	43798184	43801392	+	0	NA	Intergenic	ORR1G|LTR|ERVL-MaLR	-26119	NR_131055	71018	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	2.844	nan	0.490	0.718	1.529	1.053	5.645	4.118	2.317	1.617	5.550	5.890	3.154	3.488	2.206	1.315	2.006	1.469	nan	0.887	0.991	0.917	1.451	1.051	0.823
9593	chr3	100291979	100294162	+	0	NA	Intergenic	Lx9|LINE|L1	130607	NR_104341	14547	Mm.279228	NM_010269	ENSMUSG00000027865	Gdap2	C77050|D3Ertd801e	ganglioside-induced differentiation-associated-protein 2	protein-coding	4.306	13.645	2.590	6.655	2.126	1.551	3.991	3.123	3.339	6.196	nan	2.186	4.687	4.129	5.550	5.066	3.556	5.560	1.679	1.354	1.725	2.274	1.428	1.947	8.118
12333	chr6	72815401	72820195	+	0	NA	Intergenic	MTC|LTR|ERVL-MaLR	-28753	NM_009332	21415	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	5.588	4.506	2.600	3.326	5.158	3.732	5.043	6.293	3.894	4.484	2.421	2.083	6.284	7.668	4.924	6.367	5.325	5.217	1.133	1.525	1.170	0.733	0.905	1.057	4.509
13001	chr7	25269544	25270877	+	0	NA	intron (NM_001302811, intron 1 of 20)	intron (NM_001302811, intron 1 of 20)	2511	NM_001302811	71722	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.743	0.656	0.159	0.641	2.483	1.871	3.083	2.216	2.168	2.180	2.775	0.860	2.121	4.964	3.073	2.041	0.894	1.311	1.311	0.511	0.101	1.431	0.919	0.571	1.548
11069	chr5	23929007	23932287	+	0	NA	intron (NM_001310471, intron 10 of 10)	intron (NM_001310471, intron 10 of 10)	78414	NR_028536	100217436		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	10.735	10.776	3.981	11.201	5.409	2.590	8.569	8.454	5.924	9.086	7.449	2.781	7.139	11.309	9.730	10.643	7.028	8.399	4.847	2.381	2.001	4.668	3.642	3.439	13.869
1671	chr10	97832871	97837264	+	0	NA	intron (NR_033537, intron 2 of 4)	intron (NR_033537, intron 2 of 4)	120295	NR_130992	78127	Mm.376175	NR_130992		4930525C09Rik	-	RIKEN cDNA 4930525C09 gene	ncRNA	3.812	0.716	0.455	1.584	1.018	0.426	4.897	4.664	2.990	2.456	nan	1.373	4.523	2.810	5.541	5.180	4.953	3.343	nan	0.538	0.204	nan	0.344	0.523	2.926
14209	chr8	47701740	47704111	+	0	NA	Intergenic	MT2C_Mm|LTR|ERVL	11006	NM_172407	70925	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	9.318	11.800	6.440	5.692	4.521	3.745	7.482	10.335	4.010	6.200	6.386	3.950	7.996	8.405	8.414	10.639	8.525	7.212	4.979	4.298	5.030	7.517	4.217	4.188	13.679
4242	chr13	72761291	72777755	+	0	NA	Intergenic	Intergenic	47240	NR_046196	78446	Mm.244082	NR_046196		D730050B12Rik	-	RIKEN cDNA D730050B12 gene	ncRNA	1.750	0.448	0.214	6.464	2.107	1.125	0.331	0.667	6.154	9.345	7.059	4.809	0.715	1.510	1.889	nan	0.904	5.865	3.130	3.563	2.692	5.278	4.884	3.924	1.957
14790	chr8	128080440	128083244	+	0	NA	Intergenic	Intergenic	196383	NR_105822	102465212		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	8.429	7.097	3.685	5.832	4.647	1.980	8.361	11.283	4.181	5.551	3.301	2.174	10.439	11.727	10.663	13.091	9.263	7.542	1.928	2.152	1.491	4.041	2.044	nan	12.956
8476	chr2	101825681	101827256	+	0	NA	intron (NM_001110849, intron 2 of 9)	MER58A|DNA|hAT-Charlie	12512	NM_001110849	72446	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	3.323	1.082	0.589	2.212	2.340	0.785	1.820	1.943	2.382	2.074	0.725	0.385	1.526	3.186	1.782	2.644	1.702	4.246	1.090	0.734	0.629	0.845	0.784	0.746	2.912
830	chr1	166380775	166393714	+	0	NA	intron (NM_030245, intron 4 of 7)	B2_Mm2|SINE|B2	8077	NM_030245	27878	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	8.772	0.689	0.472	5.537	4.700	3.002	7.133	8.406	nan	9.993	2.988	2.405	9.762	10.827	nan	13.300	8.010	9.581	4.736	1.821	1.562	nan	nan	2.769	nan
7501	chr19	5951873	5956761	+	0	NA	intron (NM_001164057, intron 5 of 17)	intron (NM_001164057, intron 5 of 17)	9889	NM_001164057	18969	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	3.636	1.634	0.817	3.780	1.026	0.701	3.382	6.599	nan	1.743	1.017	2.026	3.124	2.742	3.385	4.013	3.486	3.453	0.462	0.422	0.371	0.836	0.243	0.274	5.463
10694	chr4	134822065	134829927	+	0	NA	intron (NM_025382, intron 6 of 10)	B2_Mm1a|SINE|B2	27349	NM_025382	66146	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61	transmembrane protein 57	protein-coding	nan	6.057	2.143	10.328	5.691	4.560	3.880	4.420	nan	7.067	3.748	2.585	3.791	6.963	5.615	5.875	2.826	6.305	5.350	3.248	3.027	6.481	nan	4.167	7.171
1101	chr10	12570497	12571697	+	0	NA	intron (NM_011682, intron 50 of 73)	MER2|DNA|TcMar-Tigger	290638	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	5.184	2.125	1.230	5.332	6.003	3.870	4.201	3.858	2.852	3.610	1.872	2.385	3.746	4.164	2.853	4.430	3.197	3.148	1.117	2.226	1.103	1.422	2.343	1.819	3.995
15676	chrX	11709444	11714317	+	0	NA	Intergenic	B3A|SINE|B2	368673	NM_175045	71458	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	3.564	4.810	1.247	3.920	1.913	1.124	3.128	3.882	2.273	3.791	1.402	1.465	2.865	5.146	3.631	4.227	2.664	3.370	3.606	2.353	2.794	4.790	3.083	2.638	7.262
12736	chr6	128384614	128389893	+	0	NA	Intergenic	L1MB4|LINE|L1	11743	NM_027697	71149	Mm.483176	NM_027697	ENSMUSG00000079304	4933413G19Rik	-	RIKEN cDNA 4933413G19 gene	protein-coding	6.251	nan	1.135	5.959	2.717	1.878	12.661	10.276	3.692	6.903	3.927	1.936	10.176	12.228	12.427	14.568	9.669	8.380	3.127	2.242	1.896	3.995	2.617	2.991	13.068
14481	chr8	96693569	96699176	+	0	NA	Intergenic	Intergenic	-150399	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	4.425	1.446	0.976	2.697	2.887	2.136	1.251	4.772	1.753	2.484	1.441	1.451	2.217	2.982	2.498	3.075	3.153	1.720	4.049	2.487	3.109	9.950	3.155	2.766	2.342
11927	chr5	144866523	144871346	+	0	NA	Intergenic	B3A|SINE|B2	27882	NR_106006	102465629		NR_106006	ENSMUSG00000098822	Mir7039	Gm27824|mmu-mir-7039	microRNA 7039	ncRNA	5.225	0.950	0.758	3.284	4.305	2.613	6.263	4.622	nan	3.998	1.042	1.782	5.193	7.024	5.555	6.106	7.295	4.911	1.503	0.886	1.391	0.663	0.973	0.848	4.955
1165	chr10	20878643	20881532	+	0	NA	Intergenic	Intergenic	-72460	NM_026203	52906	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0.558	9.466	4.668	1.617	0.343	0.279	0.213	0.478	nan	1.110	0.316	0.751	0.412	nan	1.013	0.836	0.774	0.771	5.927	4.028	4.576	7.395	5.723	6.182	nan
6471	chr17	28344275	28346805	+	0	NA	intron (NM_011566, intron 1 of 12)	intron (NM_011566, intron 1 of 12)	4806	NM_001204156	21678	Mm.6655	NM_011566	ENSMUSG00000002249	Tead3	DTEF-1|ETFR-1|TEAD-3|TEF-5|Tcf13r2	TEA domain family member 3	protein-coding	6.894	17.899	4.833	7.322	1.799	1.045	4.355	5.774	3.269	5.617	8.993	3.408	4.701	4.262	6.023	7.047	4.387	4.302	3.483	2.022	2.187	5.268	1.035	1.392	9.714
9063	chr2	170091895	170096503	+	0	NA	Intergenic	MLT1F1|LTR|ERVL-MaLR	-23421	NR_033632	100043910	Mm.468546	NR_033632	ENSMUSG00000097065	A630075F10Rik	4831414D02|Gm4722	RIKEN cDNA A630075F10 gene	ncRNA	9.600	1.889	1.449	4.125	3.585	2.015	9.566	10.394	4.747	4.045	3.963	2.924	12.020	9.072	7.815	12.070	9.932	6.196	3.183	2.564	1.655	3.465	2.028	1.319	5.384
3940	chr13	34092991	34095078	+	0	NA	intron (NR_046184, intron 3 of 4)	B3A|SINE|B2	-16026	NM_009450	22151	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	5.333	8.045	1.809	7.465	1.663	1.430	4.136	4.535	nan	8.079	3.899	2.519	4.431	6.393	5.403	7.124	2.251	nan	4.368	1.393	1.369	4.860	2.083	1.946	9.196
13667	chr7	123451376	123453850	+	0	NA	Intergenic	Intergenic	-9681	NM_007474	11833	Mm.273175	NM_007474	ENSMUSG00000030762	Aqp8	AI255744|AQP-8	aquaporin 8	protein-coding	4.777	3.107	2.041	3.048	3.168	2.702	9.020	9.906	2.509	5.119	3.298	2.854	4.952	6.976	nan	5.862	5.435	4.315	2.380	1.680	2.998	2.018	3.344	4.524	7.424
335	chr1	77690930	77692791	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-176772	NM_007936	13838	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	4.999	0.314	0.351	1.249	2.743	1.537	6.375	3.027	4.570	3.399	1.139	0.414	7.466	4.669	3.190	nan	5.191	nan	nan	nan	0.395	0.485	nan	0.319	nan
15103	chr9	56756931	56758944	+	0	NA	Intergenic	Intergenic	-72684	NM_181074	235402	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	1.192	0.988	0.879	0.555	1.024	0.617	1.290	2.688	1.109	1.023	2.134	1.697	0.586	1.191	0.946	0.856	0.821	1.374	3.416	3.570	2.130	2.947	5.850	3.393	1.248
10938	chr4	150241313	150247428	+	0	NA	exon (NM_001025388, exon 6 of 12)	exon (NM_001025388, exon 6 of 12)	7046	NM_001025388	433182	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	4.562	nan	0.812	5.317	3.847	2.208	2.966	4.038	4.285	4.758	6.614	2.563	3.414	5.607	4.332	4.945	2.192	5.481	1.957	1.190	0.878	3.592	0.784	0.466	4.553
3531	chr12	81912303	81926081	+	0	NA	exon (NM_018814, exon 6 of 36)	exon (NM_018814, exon 6 of 36)	59162	NM_018814	54604	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog (Drosophila)	protein-coding	7.097	2.686	1.353	5.515	5.481	3.289	3.198	2.875	4.032	4.171	3.689	1.839	4.486	nan	3.601	nan	4.219	5.444	2.100	2.040	1.382	2.173	2.278	1.867	4.119
9374	chr3	68311235	68313571	+	0	NA	intron (NM_001113420, intron 1 of 6)	intron (NM_001113420, intron 1 of 6)	-155780	NM_001282045	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	3.935	1.018	0.330	3.806	2.421	0.778	5.274	2.180	2.901	2.956	4.574	2.279	3.622	3.828	5.314	4.965	2.511	5.886	2.198	0.792	0.420	2.047	1.120	0.775	6.063
14091	chr8	26206829	26217258	+	0	NA	Intergenic	Intergenic	53874	NM_199042	73754	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	7.540	14.037	6.511	7.173	4.222	2.073	4.002	9.566	4.602	5.780	6.132	4.147	6.319	7.411	6.597	6.913	4.344	6.661	1.491	2.759	2.328	nan	1.106	1.227	9.057
11173	chr5	36069185	36073958	+	0	NA	intron (NM_030889, intron 4 of 26)	intron (NM_030889, intron 4 of 26)	-132450	NM_175249	76943	Mm.44242	NM_175249	ENSMUSG00000043430	Psapl1	2310020A21Rik	prosaposin-like 1	protein-coding	5.624	4.079	1.510	8.124	2.771	1.567	4.231	3.649	3.602	4.162	1.715	1.280	3.502	5.438	nan	6.681	nan	6.213	0.801	1.141	0.792	1.034	0.344	0.349	6.760
10345	chr4	106604288	106616242	+	0	NA	intron (NM_183182, intron 8 of 9)	intron (NM_183182, intron 8 of 9)	6973	NM_183182	242602	Mm.235591	NM_183182	ENSMUSG00000054362	Lexm	-	lymphocyte expansion molecule	protein-coding	1.098	11.303	4.611	1.170	0.581	0.403	1.493	nan	1.017	1.052	1.010	0.553	1.061	1.934	1.953	1.513	1.154	nan	2.902	1.667	1.197	3.111	2.144	1.491	2.044
15253	chr9	69559301	69564769	+	0	NA	Intergenic	L1MC|LINE|L1	105091	NR_037296	100526560		NR_037296	ENSMUSG00000093042	Mir3109	mir-3109|mmu-mir-3109	microRNA 3109	ncRNA	4.734	0.556	0.332	1.427	1.189	0.860	4.808	6.042	3.574	3.274	0.657	0.392	6.417	5.506	5.006	5.543	5.054	4.031	nan	0.364	0.224	0.366	0.821	0.718	6.568
9914	chr4	8769130	8770552	+	0	NA	intron (NM_001277149, intron 2 of 37)	intron (NM_001277149, intron 2 of 37)	79435	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	3.856	8.035	6.598	2.754	2.906	2.146	1.283	nan	2.017	2.121	2.384	1.767	1.423	2.593	1.712	1.868	2.347	2.146	3.437	5.856	3.285	4.620	3.694	3.653	1.323
9778	chr3	122589945	122592156	+	0	NA	intron (NM_153118, intron 1 of 13)	intron (NM_153118, intron 1 of 13)	28664	NM_001114665	214459	Mm.209491	NM_153118	ENSMUSG00000039735	Fnbp1l	2610318I01Rik|AW548221|TOCA1|toca-1	formin binding protein 1-like	protein-coding	4.752	0.722	0.624	2.043	3.761	2.462	8.358	6.314	3.886	3.945	5.950	6.978	7.552	6.143	5.232	4.578	4.551	5.777	2.684	4.097	1.852	2.743	4.175	2.831	3.135
7691	chr19	29916969	29919816	+	0	NA	Intergenic	Intergenic	-6722	NM_133775	77125	Mm.182359	NM_133775	ENSMUSG00000024810	Il33	9230117N10Rik|Il-33|Il1f11|NF-HEV	interleukin 33	protein-coding	nan	0.564	0.567	nan	0.400	0.088	1.198	nan	1.043	0.898	6.869	3.933	0.595	0.676	1.001	1.177	1.261	1.179	nan	0.662	0.110	0.697	nan	0.205	0.885
7685	chr19	29326233	29330130	+	0	NA	Intergenic	L1M2|LINE|L1	-2863	NM_013754	27356	Mm.306511	NM_013754	ENSMUSG00000050957	Insl6	RIF1	insulin-like 6	protein-coding	7.050	7.986	2.501	7.411	4.464	2.455	6.799	8.057	5.825	9.782	nan	3.361	5.554	8.667	6.004	7.558	8.421	8.615	nan	3.021	1.780	4.497	nan	3.158	10.537
11999	chr5	151472846	151474164	+	0	NA	Intergenic	IAPEz-int|LTR|ERVK	67001	NR_131166	100042166	Mm.443286	NR_131166	ENSMUSG00000097321	Gm3704	-	predicted gene 3704	ncRNA	2.204	0.803	0.196	2.153	2.650	2.093	2.931	1.775	3.673	3.476	0.499	0.697	3.690	3.813	3.732	4.799	3.415	3.249	0.811	0.313	1.012	0.740	0.584	0.947	nan
11139	chr5	32991942	32993425	+	0	NA	3' UTR (NM_001170567, exon 43 of 43)	3' UTR (NM_001170567, exon 43 of 43)	-26133	NM_011738	22629	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	4.134	0.498	0.549	nan	2.745	1.906	6.172	3.761	2.860	2.252	1.526	0.269	5.036	4.905	3.781	3.999	4.733	3.816	0.711	0.806	0.578	0.380	0.474	0.661	2.750
5756	chr16	4828388	4829810	+	0	NA	Intergenic	Intergenic	-6317	NM_030192	78809	Mm.325551	NM_030192	ENSMUSG00000022518	4930562C15Rik	-	RIKEN cDNA 4930562C15 gene	protein-coding	2.667	0.740	0.445	2.660	0.783	0.391	nan	5.159	3.264	3.978	0.880	0.211	4.046	4.260	1.123	3.521	1.641	3.954	0.809	0.990	0.801	7.959	1.084	0.623	1.705
3533	chr12	81943505	81949513	+	0	NA	intron (NM_018814, intron 8 of 35)	intron (NM_018814, intron 8 of 35)	86479	NM_018814	54604	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog (Drosophila)	protein-coding	5.626	2.092	1.339	4.745	5.867	2.922	2.511	2.391	3.534	3.780	8.111	3.010	2.940	4.244	3.038	3.170	3.131	4.869	1.792	2.061	1.648	2.149	1.300	1.152	3.356
4856	chr14	76229857	76236476	+	0	NA	Intergenic	L1Md_F2|LINE|L1	122275	NM_013745	27275	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	8.008	4.641	2.097	6.887	7.859	5.498	6.042	9.625	5.262	6.163	5.139	4.383	6.436	9.031	6.553	5.672	4.286	5.422	2.367	2.624	2.587	2.556	2.815	2.936	8.777
440	chr1	92796650	92798655	+	0	NA	Intergenic	Intergenic	-34034	NM_016696	14733	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	6.451	1.076	0.567	2.775	6.017	2.331	4.055	6.633	3.690	4.984	2.270	1.882	4.234	5.748	3.708	6.607	3.037	4.443	1.364	0.616	0.611	nan	0.716	0.540	3.301
15633	chr9	123004587	123037554	+	0	NA	promoter-TSS (NM_025339)	promoter-TSS (NM_025339)	-256	NM_025339	66079	Mm.482265	NM_025339	ENSMUSG00000066233	Tmem42	0610027O18Rik|4933429E06Rik|AV003444|D9Ertd662e	transmembrane protein 42	protein-coding	5.483	1.396	0.628	nan	nan	1.675	nan	nan	nan	nan	2.547	1.707	nan	7.946	nan	8.826	4.484	9.241	1.287	0.906	0.788	1.310	1.176	0.910	nan
11489	chr5	102395993	102399932	+	0	NA	Intergenic	Intergenic	-83429	NM_146161	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	8.404	1.299	0.436	5.248	4.356	3.113	6.833	6.719	6.491	7.409	3.085	1.719	2.518	3.456	5.205	7.252	6.459	7.264	1.527	1.280	1.325	1.003	1.077	0.799	7.653
9881	chr3	151872040	151875364	+	0	NA	Intergenic	Lx9|LINE|L1	-36174	NM_008966	19220	Mm.331442	NM_008966	ENSMUSG00000028036	Ptgfr	AI957154|PGF|fp	prostaglandin F receptor	protein-coding	9.968	14.774	4.151	11.254	4.338	2.619	9.653	8.454	6.521	15.051	9.347	4.911	8.015	9.233	10.727	12.009	7.035	12.429	6.674	2.420	3.616	7.414	2.830	4.260	16.858
13028	chr7	26489266	26497483	+	0	NA	Intergenic	IAPLTR3-int|LTR|ERVK	-41649	NM_001302792	233001	Mm.11889	NM_194056	ENSMUSG00000054102	Nlrp9a	D7Ertd565e|Nalp-theta|Nalp9a	NLR family, pyrin domain containing 9A	protein-coding	5.347	4.682	2.660	3.677	3.531	1.994	4.238	3.981	2.591	3.438	5.947	4.075	1.739	3.725	2.488	2.855	2.344	2.994	1.550	2.314	1.878	1.608	1.948	2.012	4.164
2525	chr11	79482527	79495843	+	0	NA	intron (NM_010897, intron 36 of 57)	intron (NM_010897, intron 36 of 57)	-5154	NR_045305	104522	Mm.436987	NR_045305	ENSMUSG00000091523	AU040972	AU040954	expressed sequence AU040972	ncRNA	nan	11.694	4.328	1.279	0.574	0.251	nan	0.723	0.912	0.804	0.991	0.386	0.431	nan	nan	nan	0.501	nan	0.854	0.707	nan	1.795	0.662	0.466	1.138
9716	chr3	115384401	115386544	+	0	NA	Intergenic	MER77B|LTR|ERVL	304507	NM_153157	229759	Mm.54183	NM_153157	ENSMUSG00000027965	Olfm3	B230206G02Rik	olfactomedin 3	protein-coding	4.091	7.434	3.270	4.227	2.948	2.191	1.048	0.777	1.682	nan	1.309	0.770	0.550	1.616	1.804	nan	1.930	2.219	0.816	2.936	1.771	0.963	nan	0.800	1.538
14970	chr9	37375284	37376704	+	0	NA	intron (NM_175189, intron 1 of 6)	intron (NM_175189, intron 1 of 6)	8388	NM_175189	72927	Mm.266133	NM_175189	ENSMUSG00000046240	Hepacam	2900042E01Rik|Glialcam|Hepn1	hepatocyte cell adhesion molecule	protein-coding	4.348	4.117	2.143	1.860	0.401	0.479	8.838	5.457	1.384	1.419	0.872	0.569	4.556	4.702	4.456	4.336	2.996	2.467	nan	1.195	0.448	0.752	5.524	4.263	7.465
14177	chr8	41681423	41682957	+	0	NA	Intergenic	Intergenic	-145077	NR_045497	69966	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA	3.570	1.632	1.131	1.446	0.773	0.597	2.236	1.493	0.944	1.289	0.792	0.863	2.527	4.269	2.137	1.628	0.841	1.429	0.805	0.720	0.707	0.673	0.796	0.236	2.317
11719	chr5	124874298	124878392	+	0	NA	intron (NM_001081750, intron 2 of 3)	RSINE1|SINE|B4	13640	NM_001081750	269704	Mm.138617	NM_001081750	ENSMUSG00000079215	Zfp664	AW060232|D930038J03Rik|ZFOC1|Znf664	zinc finger protein 664	protein-coding	5.170	7.284	3.463	6.836	4.430	4.264	5.527	5.079	3.488	nan	5.750	5.106	3.917	6.092	nan	6.243	nan	nan	nan	2.162	3.144	3.824	nan	4.180	nan
10729	chr4	136356687	136361766	+	0	NA	Intergenic	Intergenic	48284	NM_001277123	74326	Mm.31051	NM_028871	ENSMUSG00000066037	Hnrnpr	2610003J05Rik|2610528B01Rik|Hnrpr	heterogeneous nuclear ribonucleoprotein R	protein-coding	5.394	1.165	0.622	1.951	2.422	1.236	4.687	9.320	nan	10.029	7.260	5.189	6.569	7.391	3.727	4.056	2.610	4.883	6.564	3.269	2.789	8.222	6.827	5.800	4.979
1898	chr11	3820798	3822620	+	0	NA	intron (NM_152818, intron 1 of 13)	RLTR13D3A1|LTR|ERVK	42194	NM_152818	74309	Mm.61022	NM_152818	ENSMUSG00000020435	Osbp2	1700095P05Rik|C630001G20Rik|Gm244|ORP-4|OSBPL1	oxysterol binding protein 2	protein-coding	2.916	0.885	0.385	3.859	1.791	1.472	2.743	2.462	3.019	3.020	1.018	0.536	2.321	4.962	2.610	2.627	1.804	3.361	0.745	nan	0.906	0.849	0.259	0.606	3.745
12521	chr6	98695836	98700870	+	0	NA	Intergenic	ORR1F|LTR|ERVL-MaLR	329945	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	1.083	0.401	0.387	0.571	0.303	0.172	0.570	0.614	0.537	0.513	8.306	2.074	0.598	0.470	nan	nan	0.878	0.697	nan	nan	0.473	2.093	0.594	0.334	0.457
1044	chr1	194298355	194303568	+	0	NA	Intergenic	Intergenic	-78202	NR_040477	74942	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	2.346	0.730	0.453	1.633	0.872	0.119	3.155	1.005	1.504	1.723	1.019	0.596	1.112	1.296	1.649	nan	1.222	1.857	2.658	1.362	0.992	4.724	nan	1.285	nan
4668	chr14	54739861	54741901	+	0	NA	intron (NM_016972, intron 3 of 10)	intron (NM_016972, intron 3 of 10)	-28707	NM_207131	110794	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	3.083	nan	0.649	1.183	0.561	0.121	2.434	2.973	1.551	1.467	3.279	1.057	2.552	3.753	5.040	2.951	0.994	2.800	1.044	0.398	0.180	1.021	0.168	0.310	3.022
14066	chr8	23167824	23171568	+	0	NA	Intergenic	Intergenic	16425	NM_029002	74561	Mm.290028	NM_029002	ENSMUSG00000063672	Nkx6-3	9130417I07Rik|Nkx6.3	NK6 homeobox 3	protein-coding	3.007	nan	0.713	2.968	1.059	0.633	3.343	7.346	4.562	4.313	1.008	1.662	5.341	4.535	5.582	6.934	3.834	4.941	1.192	0.979	0.624	nan	0.955	0.777	4.933
12994	chr7	20505398	20508346	+	0	NA	Intergenic	Lx6|LINE|L1	3662	NM_001166737	667129	Mm.480263	NM_001166737	ENSMUSG00000096663	Vmn1r103	EG667129|Gm8474	vomeronasal 1 receptor 103	protein-coding	7.260	2.603	1.125	5.841	7.167	6.757	7.813	10.127	4.583	9.903	3.736	2.939	6.522	8.088	6.182	6.414	6.855	7.394	0.810	1.894	3.000	1.305	0.740	0.638	10.204
3513	chr12	81235991	81238459	+	0	NA	intron (NM_080440, intron 2 of 7)	RMER19B|LTR|ERVK	71074	NR_037227	100526532		NR_037227	ENSMUSG00000092673	Mir3067	mir-3067|mmu-mir-3067	microRNA 3067	ncRNA	5.305	2.484	1.160	3.741	2.354	2.293	3.456	3.327	3.988	4.257	1.279	1.109	5.104	7.042	5.780	8.734	4.639	4.986	1.485	1.808	1.277	1.817	0.865	0.847	9.084
12423	chr6	88850455	88856809	+	0	NA	intron (NM_001347327, intron 2 of 7)	intron (NM_001347327, intron 2 of 7)	10778	NR_045880	100038356	Mm.442704	NR_045880	ENSMUSG00000085828	Gm15612	ENSMUSG00000072920|OTTMUSG00000024319	predicted gene 15612	ncRNA	5.819	6.360	1.734	nan	2.786	1.552	7.172	8.445	4.238	5.394	2.673	2.309	5.561	8.427	7.916	9.965	4.330	7.530	nan	1.214	1.235	4.277	2.131	1.657	9.391
5737	chr15	103069431	103073136	+	0	NA	Intergenic	Intergenic	36888	NM_013553	15423	Mm.1351	NM_013553	ENSMUSG00000075394	Hoxc4	Hox-3.5	homeobox C4	protein-coding	8.535	11.271	4.510	5.482	3.670	1.781	7.722	10.418	nan	5.323	5.598	3.349	8.571	7.487	9.117	nan	7.587	6.330	5.253	2.643	2.060	5.134	2.563	2.713	nan
8258	chr2	58636281	58639793	+	0	NA	intron (NM_001289660, intron 1 of 7)	ERV3-16A3_I-int|LTR|ERVL	70703	NM_001289660	76654	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	7.141	0.464	0.184	2.623	0.874	0.314	5.726	nan	4.904	5.799	1.831	0.403	9.381	4.575	7.075	11.666	8.040	6.688	1.764	0.791	0.593	1.393	1.775	1.103	13.395
4029	chr13	41699479	41703118	+	0	NA	Intergenic	Intergenic	50536	NM_001145878	328231	Mm.227476	NM_177808	ENSMUSG00000054258	Gm5082	A030008J09|EG328231	predicted gene 5082	protein-coding	7.688	6.283	2.309	8.571	3.792	2.314	nan	5.123	nan	nan	3.772	3.220	4.934	7.515	6.435	7.570	3.915	7.905	4.776	2.385	1.981	5.532	3.077	3.730	9.536
91	chr1	36320760	36322426	+	0	NA	non-coding (NR_033310, exon 6 of 6)	non-coding (NR_033310, exon 6 of 6)	13860	NM_001172205	214855	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	6.035	11.558	4.623	5.221	5.095	3.632	8.318	5.852	4.637	4.778	6.014	3.154	8.602	8.957	5.768	7.476	3.747	4.801	2.446	1.458	2.232	1.635	1.359	2.077	5.056
2137	chr11	48893331	48900936	+	0	NA	intron (NM_001024230, intron 3 of 4)	intron (NM_001024230, intron 3 of 4)	5019	NM_001024230	432555	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	6.895	8.936	4.098	6.788	5.316	2.917	3.485	4.118	4.595	4.706	2.943	2.771	4.209	5.805	4.878	4.686	3.745	nan	nan	1.820	1.108	nan	nan	1.393	4.723
7933	chr2	4546669	4550175	+	0	NA	intron (NM_001347086, intron 12 of 24)	intron (NM_001347086, intron 12 of 24)	-11332	NM_001177844	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	6.863	0.897	0.749	5.102	4.889	3.801	6.281	7.505	6.346	6.702	1.624	1.818	11.720	7.532	6.287	7.035	7.536	8.798	2.655	1.307	1.573	1.198	1.165	1.963	6.229
4116	chr13	51166428	51169684	+	0	NA	Intergenic	Intergenic	-2969	NM_029173	75124	Mm.179243	NM_029173	ENSMUSG00000021396	Nxnl2	4930519N16Rik|Rdcvf2	nucleoredoxin-like 2	protein-coding	nan	3.051	1.882	nan	1.059	0.729	1.169	0.886	1.225	1.650	7.000	4.014	0.895	1.088	1.226	1.601	0.743	nan	0.779	nan	0.643	0.432	0.479	0.461	1.626
467	chr1	95056284	95059399	+	0	NA	Intergenic	Intergenic	-255787	NM_026321	67698	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	10.491	nan	0.212	7.499	3.779	2.351	10.838	9.871	6.276	7.254	5.573	1.846	13.938	14.505	9.854	19.324	7.109	11.101	nan	0.666	0.369	nan	0.664	0.483	15.135
9088	chr2	174672929	174674549	+	0	NA	intron (NM_001099328, intron 3 of 4)	intron (NM_001099328, intron 3 of 4)	30205	NM_001099328	100043757	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	ENSMUSG00000050600|OTTMUSG00000017459	zinc finger protein 831	protein-coding	0.855	0.533	0.741	0.639	0.253	0.610	0.687	1.030	0.614	1.049	0.357	0.109	1.221	1.323	0.749	1.286	0.736	nan	2.413	2.737	3.259	1.154	4.845	4.931	nan
7146	chr18	36023733	36030130	+	0	NA	intron (NM_001167891, intron 5 of 9)	intron (NM_001167891, intron 5 of 9)	62101	NR_110349	74002	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0.596	1.234	0.652	0.906	0.538	0.194	0.344	0.976	0.519	0.640	0.489	0.935	0.350	nan	0.559	nan	0.466	0.758	3.250	1.643	1.351	5.623	1.683	1.451	0.882
8001	chr2	22889673	22891108	+	0	NA	Intergenic	L1_Mus1|LINE|L1	-5132	NM_019501	56075	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	4.282	0.950	2.500	2.495	7.963	5.202	3.681	3.159	2.325	2.377	2.696	1.103	4.348	5.031	2.981	2.650	2.249	2.929	0.860	1.191	1.062	0.497	0.888	0.517	3.533
11198	chr5	38951321	38956123	+	0	NA	Intergenic	Intergenic	-77029	NM_013748	27278	Mm.440845	NM_013748	ENSMUSG00000039315	Clnk	MIST	cytokine-dependent hematopoietic cell linker	protein-coding	8.192	8.927	2.663	7.355	3.449	1.593	7.321	7.342	4.644	7.718	5.658	3.140	6.489	8.394	8.702	8.305	5.644	7.415	3.516	1.524	1.676	3.890	2.188	2.653	10.203
11177	chr5	36676546	36680080	+	0	NA	intron (NM_001081232, intron 1 of 8)	B4|SINE|B4	17708	NM_001081232	320661	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	1.359	0.953	0.517	0.814	0.324	0.417	0.954	1.720	0.847	0.823	1.529	0.892	0.941	1.053	nan	1.350	nan	1.322	4.770	2.066	1.780	4.571	2.770	2.654	1.674
14282	chr8	72297629	72299450	+	0	NA	Intergenic	ID_B1|SINE|B4	-20523	NM_008452	16598	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	6.457	7.093	4.847	6.171	3.582	4.481	5.948	5.837	4.397	7.111	3.091	2.956	6.630	5.923	6.522	7.120	6.388	5.538	nan	3.756	4.295	4.545	3.773	5.098	7.234
9579	chr3	97771450	97772612	+	0	NA	intron (NM_001039376, intron 8 of 46)	intron (NM_001039376, intron 8 of 46)	-4017	NM_178080	83679	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	4.667	0.664	0.784	1.609	2.875	2.161	4.855	2.491	2.233	2.132	nan	1.057	3.946	4.051	3.122	4.181	6.767	3.161	0.990	1.467	1.469	1.377	1.256	1.616	2.563
563	chr1	129500830	129507204	+	0	NA	intron (NM_172485, intron 2 of 27)	intron (NM_172485, intron 2 of 27)	230713	NM_172485	210417	Mm.380518	NM_172485	ENSMUSG00000042581	Thsd7b	1700074E13Rik|B930082A18|D130067I03Rik	thrombospondin, type I, domain containing 7B	protein-coding	6.507	nan	0.701	3.234	4.945	2.350	3.837	4.388	5.878	7.226	1.430	1.740	6.486	7.658	5.659	9.495	6.191	nan	nan	1.889	0.882	1.625	2.276	1.698	4.319
11078	chr5	24546816	24548986	+	0	NA	intron (NR_033188, intron 11 of 17)	intron (NR_033188, intron 11 of 17)	-6923	NM_001310476	117590	Mm.207071	NM_080444	ENSMUSG00000038204	Asb10	Asb-10|BB137407	ankyrin repeat and SOCS box-containing 10	protein-coding	3.988	1.033	0.549	4.398	1.384	0.450	4.265	5.803	3.178	4.553	0.346	0.520	6.773	6.552	3.970	6.948	4.724	5.589	0.717	0.552	0.270	0.833	0.518	0.513	4.641
2919	chr11	107001051	107007196	+	0	NA	Intergenic	Intergenic	-4598	NM_010655	16647	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	0.933	7.422	8.758	nan	0.992	1.196	0.563	0.623	nan	nan	0.738	0.840	0.262	nan	0.450	0.687	0.751	nan	1.099	1.245	2.007	nan	1.221	1.176	0.650
3248	chr12	27048799	27052828	+	0	NA	Intergenic	Intergenic	64182	NR_045052	100504347	Mm.130500	NR_045052		Gm20187	-	predicted gene, 20187	ncRNA	8.239	0.821	0.452	4.891	4.650	1.972	5.981	4.235	3.856	5.025	0.748	0.624	8.571	8.402	9.171	9.190	7.419	7.932	0.812	0.621	0.439	1.010	0.546	0.466	14.740
15367	chr9	88135515	88140317	+	0	NA	Intergenic	Lx5c|LINE|L1	-189693	NM_011851	23959	Mm.244235	NM_011851	ENSMUSG00000032420	Nt5e	2210401F01Rik|5'-NT|AI447961|CD73|NT|Nt5|eNT	5' nucleotidase, ecto	protein-coding	5.089	1.496	1.066	2.414	2.352	1.083	3.822	4.715	4.782	5.133	2.756	1.589	5.314	6.528	4.457	6.162	4.264	5.913	1.205	1.461	0.613	1.332	1.437	0.914	6.411
6915	chr17	84550774	84561726	+	0	NA	intron (NM_177606, intron 3 of 29)	IMPB_01|Satellite|Satellite	44355	NM_177606	213556	Mm.215159	NM_177606	ENSMUSG00000040852	Plekhh2	AI256725|E030001K05|mKIAA2028	pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	protein-coding	4.034	2.767	1.103	3.710	2.318	1.298	8.184	6.622	nan	4.074	6.111	2.845	5.376	6.475	6.629	7.069	5.444	4.685	0.808	0.908	0.802	1.084	2.083	1.538	8.569
12346	chr6	82820685	82823074	+	0	NA	Intergenic	Intergenic	-47425	NM_013820	15277	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	5.826	0.773	1.125	3.400	5.017	2.545	5.273	8.996	3.661	4.811	7.211	3.038	4.700	7.581	4.865	6.399	6.191	3.615	2.768	2.008	1.930	2.038	2.617	2.012	5.638
7334	chr18	65534389	65535785	+	0	NA	intron (NR_105742, intron 1 of 6)	intron (NR_105742, intron 1 of 6)	-45143	NM_207255	328977	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	3.778	1.497	0.799	2.650	3.317	2.036	1.248	1.489	3.417	3.303	1.735	0.384	2.664	3.858	2.878	2.538	1.421	5.570	0.752	0.177	0.329	0.297	0.328	0.173	3.024
6851	chr17	74163078	74165035	+	0	NA	Intergenic	Intergenic	-116140	NM_053188	94224	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	1.061	13.080	6.338	2.048	0.623	0.439	nan	nan	nan	1.068	0.668	0.438	0.114	0.257	0.785	0.975	1.766	1.370	0.914	0.744	0.179	0.445	0.417	0.300	0.770
12280	chr6	61182123	61185004	+	0	NA	intron (NM_183310, intron 1 of 10)	intron (NM_183310, intron 1 of 10)	-2753	NR_040287	100504262	Mm.438066	NR_040287		A730020E08Rik	-	RIKEN cDNA A730020E08 gene	ncRNA	0.978	0.991	0.738	0.926	0.827	0.341	1.141	1.877	1.119	1.022	1.913	1.033	0.588	0.802	1.318	nan	nan	1.666	4.226	2.965	2.200	5.455	2.443	2.108	1.037
13367	chr7	87324765	87326031	+	0	NA	intron (NM_015760, intron 11 of 17)	intron (NM_015760, intron 11 of 17)	78749	NM_001285833	50490	Mm.31748	NM_015760	ENSMUSG00000030562	Nox4	AI648021	NADPH oxidase 4	protein-coding	2.539	4.698	6.291	1.653	1.269	1.865	2.417	6.007	nan	2.060	3.077	3.788	2.536	3.264	1.714	1.428	1.660	1.113	1.263	2.927	2.094	nan	1.680	1.055	1.415
14494	chr8	97226486	97232341	+	0	NA	Intergenic	Lx7|LINE|L1	-683440	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	4.183	3.364	1.352	3.717	3.109	1.418	3.254	4.284	2.343	2.861	1.146	1.402	3.803	5.277	4.323	4.189	3.958	3.116	2.108	2.338	1.178	2.749	1.986	1.259	5.004
68	chr1	31148611	31154558	+	0	NA	intron (NR_033445, intron 2 of 2)	intron (NR_033445, intron 2 of 2)	-24851	NM_153601	266744	Mm.389093	NM_153601	ENSMUSG00000050217	Lgsn	Gluld1|Lgs|lengsin	lengsin, lens protein with glutamine synthetase domain	protein-coding	5.657	nan	0.287	3.770	2.748	1.199	3.385	6.102	4.449	4.393	1.215	1.971	6.967	4.790	4.998	7.766	6.523	6.894	0.676	0.651	0.430	1.748	0.381	0.153	2.983
13617	chr7	119435745	119445910	+	0	NA	Intergenic	MIR|SINE|MIR	18445	NM_025989	67133	Mm.46403	NM_025989	ENSMUSG00000030954	Gp2	2310037I18Rik|AV060639	glycoprotein 2 (zymogen granule membrane)	protein-coding	5.839	0.745	0.524	5.745	6.681	3.212	7.250	4.692	5.263	6.412	2.894	1.888	6.813	10.086	8.683	8.106	5.157	7.729	3.776	2.600	1.421	3.219	5.419	3.718	10.653
10215	chr4	82111303	82118617	+	0	NA	Intergenic	RSINE1|SINE|B4	49580	NR_040659	545641	Mm.216028	NR_040659	ENSMUSG00000085022	Gm5860	EG545641	predicted gene 5860	ncRNA	4.419	1.182	0.923	4.956	3.992	2.287	3.870	4.194	3.912	3.646	4.899	2.403	5.065	6.245	4.372	4.752	3.337	5.194	nan	3.017	2.564	5.533	1.259	1.229	4.630
2514	chr11	78333809	78341812	+	0	NA	exon (NM_201406, exon 8 of 12)	exon (NM_201406, exon 8 of 12)	-5685	NM_001313985	22248	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	5.014	1.199	0.534	4.959	2.818	1.624	3.706	3.125	4.079	5.560	1.524	0.603	6.053	8.577	6.086	7.620	3.056	nan	0.771	0.595	nan	0.912	0.367	0.276	7.150
5338	chr15	75671283	75676558	+	0	NA	intron (NM_028404, intron 3 of 13)	intron (NM_028404, intron 3 of 13)	4870	NM_028404	72960	Mm.182401	NM_028404	ENSMUSG00000000934	Top1mt	2900052H09Rik	DNA topoisomerase 1, mitochondrial	protein-coding	nan	nan	1.065	nan	1.547	1.670	4.180	8.018	2.810	nan	nan	3.034	3.929	nan	3.518	3.461	nan	3.415	1.682	1.087	1.104	nan	1.376	1.844	3.129
7209	chr18	42458262	42460256	+	0	NA	Intergenic	Zaphod|DNA|hAT-Tip100	-52228	NM_001289526	56070	Mm.270511	NM_001039474	ENSMUSG00000024498	Tcerg1	2410022J09Rik|2900090C16Rik|AI428505|CA150b|FBP23|FBP28|Taf2s|ca150|p144	transcription elongation regulator 1 (CA150)	protein-coding	4.999	1.043	0.391	1.299	1.486	0.928	3.307	6.261	1.142	1.473	0.971	0.579	4.662	2.731	2.718	3.330	2.866	3.403	0.743	0.954	0.676	0.750	0.606	0.717	1.454
15152	chr9	60372888	60378970	+	0	NA	intron (NM_001040426, intron 6 of 17)	intron (NM_001040426, intron 6 of 17)	135106	NM_001040426	207596	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	5.777	0.609	0.392	2.995	2.047	0.907	5.922	6.010	3.582	4.157	1.773	1.636	7.328	7.910	7.107	7.784	4.563	6.122	0.954	0.871	0.528	1.799	0.912	0.674	9.230
5081	chr15	27602701	27606160	+	0	NA	Intergenic	Intergenic	26263	NM_001013792	432940	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	6.641	2.911	0.808	3.719	2.094	0.715	1.778	1.797	2.330	3.076	2.213	0.778	1.222	3.898	1.857	2.777	2.315	2.345	0.993	1.798	1.158	1.402	1.635	1.243	3.971
5934	chr16	24459571	24460777	+	0	NA	intron (NM_001145952, intron 2 of 11)	intron (NM_001145952, intron 2 of 11)	12083	NM_001145952	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	2.949	3.151	1.627	2.093	1.122	0.404	5.485	7.294	2.143	3.149	0.476	0.505	6.888	4.519	4.887	5.912	2.187	6.927	1.386	1.506	0.413	1.989	nan	0.383	5.621
7164	chr18	36890394	36892663	+	0	NA	Intergenic	IAPEz-int|LTR|ERVK	-28777	NR_076393	627427		NR_076393	ENSMUSG00000063514	Gm6756	EG627427	3-phosphoglycerate dehydrogenase pseudogene	pseudo	6.076	1.432	0.369	3.042	2.553	1.648	5.391	7.091	2.564	2.111	0.971	1.182	5.882	4.070	5.439	nan	5.712	6.478	0.772	1.110	0.814	0.564	0.503	0.586	6.309
15710	chrX	35986536	35991334	+	0	NA	intron (NM_001009947, intron 20 of 52)	intron (NM_001009947, intron 20 of 52)	100103	NM_001009947	75974	Mm.32873	NM_177745	ENSMUSG00000031093	Dock11	5033414A21Rik|8030476J24|Zizimin2|sph238	dedicator of cytokinesis 11	protein-coding	3.379	2.658	0.736	3.503	1.762	1.190	1.890	1.971	3.144	2.620	1.078	1.055	2.380	3.446	2.981	3.669	2.250	3.404	3.006	2.356	2.155	5.111	2.500	3.275	2.778
10363	chr4	108058997	108061188	+	0	NA	intron (NM_011327, intron 13 of 15)	intron (NM_011327, intron 13 of 15)	-27265	NR_105823	102465213		NR_105823	ENSMUSG00000098980	Mir6397	Gm28004|mmu-mir-6397	microRNA 6397	ncRNA	3.014	0.615	0.669	2.830	3.416	2.476	3.639	4.067	2.326	1.864	1.102	3.639	1.524	2.082	2.608	2.610	2.259	nan	2.852	6.986	5.713	2.835	5.169	4.743	2.062
5961	chr16	29451580	29452941	+	0	NA	intron (NM_172613, intron 13 of 29)	intron (NM_172613, intron 13 of 29)	-73528	NM_175650	268878	Mm.9823	NM_175650	ENSMUSG00000048939	Atp13a5	C630015F21Rik	ATPase type 13A5	protein-coding	4.754	0.534	0.141	1.108	1.759	0.363	2.684	3.285	1.351	1.215	0.450	0.622	4.054	3.536	3.551	nan	2.115	2.449	0.914	0.918	0.584	1.671	nan	0.494	2.917
10568	chr4	129310877	129312645	+	0	NA	intron (NM_009030, intron 11 of 11)	intron (NM_009030, intron 11 of 11)	23609	NM_009030	19646	Mm.12145	NM_009030	ENSMUSG00000057236	Rbbp4	RBAP48|mRbAp48	retinoblastoma binding protein 4	protein-coding	1.369	0.757	0.146	1.940	2.698	1.959	1.705	1.672	2.269	3.157	2.734	0.842	2.359	3.572	nan	3.210	1.591	2.716	3.261	2.297	2.925	2.206	3.707	3.188	4.651
3807	chr13	3535949	3539077	+	0	NA	promoter-TSS (NM_008112)	promoter-TSS (NM_008112)	-562	NM_008112	14569	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	9.645	15.850	6.045	10.859	4.852	3.448	7.184	6.121	5.693	11.585	6.269	4.728	6.610	8.978	8.626	9.231	4.567	8.385	5.755	3.923	3.427	6.683	3.817	3.848	13.038
13727	chr7	132677655	132685094	+	0	NA	intron (NM_029609, intron 6 of 6)	intron (NM_029609, intron 6 of 6)	70731	NM_029609	76429	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	4.201	1.409	0.944	3.077	5.899	3.303	5.988	5.862	5.511	5.328	5.626	3.232	7.846	6.730	5.019	3.615	3.360	5.901	0.921	0.816	0.748	0.712	0.537	0.544	3.646
12646	chr6	118635429	118641751	+	0	NA	intron (NM_001255998, intron 30 of 47)	intron (NM_001255998, intron 30 of 47)	-76334	NM_001081112	232339	Mm.276116	NM_001081112	ENSMUSG00000007827	Ankrd26	5730521P14Rik|BC008111|mKIAA1074	ankyrin repeat domain 26	protein-coding	0.378	0.756	0.533	0.305	0.295	0.078	0.341	0.374	0.315	0.354	0.184	0.060	0.265	nan	0.343	0.746	0.406	0.587	2.228	3.852	2.236	6.334	nan	1.047	0.624
10981	chr4	154499050	154501284	+	0	NA	intron (NM_001177995, intron 2 of 15)	intron (NM_001177995, intron 2 of 15)	136200	NR_045643	320939	Mm.436738	NR_045643		5930403L14Rik	-	RIKEN cDNA 5930403L14 gene	ncRNA	1.809	1.390	0.394	2.261	1.534	0.431	3.784	2.137	1.711	1.756	1.954	1.168	2.180	3.462	2.905	3.824	1.095	2.453	0.798	0.385	0.110	1.532	0.314	0.126	3.611
10876	chr4	147962810	147966513	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-21127	NM_008726	18158	Mm.2740	NM_008726	ENSMUSG00000029019	Nppb	AA408272|BNF|BNP	natriuretic peptide type B	protein-coding	1.902	nan	1.037	2.935	1.814	1.060	3.063	2.652	1.455	2.818	1.359	1.338	1.997	2.268	3.776	3.669	1.861	2.696	3.449	1.353	2.179	4.875	2.708	3.227	5.011
222	chr1	59852688	59855912	+	0	NA	intron (NM_007561, intron 9 of 12)	MTEa|LTR|ERVL-MaLR	-58706	NM_001037725	72750	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	3.852	0.684	0.762	4.679	2.222	1.504	2.189	2.140	2.396	2.140	3.009	2.300	1.980	2.122	1.858	nan	2.677	4.205	1.127	0.999	1.202	0.931	0.838	0.708	1.560
3995	chr13	38055459	38058095	+	0	NA	intron (NM_024242, intron 13 of 16)	intron (NM_024242, intron 13 of 16)	19788	NM_024242	71340	Mm.297130	NM_024242	ENSMUSG00000021428	Riok1	3110046C13Rik|5430416A05Rik|Ad034	RIO kinase 1 (yeast)	protein-coding	7.557	12.656	10.699	3.092	4.977	2.794	nan	nan	nan	4.288	2.373	2.285	2.799	8.489	3.150	2.867	5.129	2.622	2.176	3.621	2.500	2.032	5.770	4.739	5.743
6322	chr17	8357730	8358655	+	0	NA	Intergenic	Intergenic	-14204	NM_001161832	21331	Mm.482744	NM_013682		T2	brachyury2	brachyury 2	protein-coding	3.551	4.413	1.613	5.116	2.051	0.552	4.918	3.773	2.763	4.996	4.208	3.131	3.907	3.582	4.439	nan	nan	3.426	nan	0.877	0.850	2.425	1.591	1.221	7.198
15220	chr9	65963680	65966413	+	0	NA	intron (NM_173185, intron 3 of 13)	intron (NM_173185, intron 3 of 13)	56036	NM_173185	214897	Mm.325816	NM_173185	ENSMUSG00000032384	Csnk1g1	9130020E21Rik	casein kinase 1, gamma 1	protein-coding	4.372	1.370	0.816	3.260	2.480	1.491	2.366	2.697	3.095	3.097	1.125	0.587	5.061	6.654	nan	3.427	3.204	4.050	nan	1.249	1.192	1.142	0.386	0.703	7.022
2911	chr11	106637771	106642509	+	0	NA	Intergenic	Intergenic	-27210	NM_198292	21763	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	6.280	5.743	3.037	6.590	4.751	4.325	5.767	7.603	6.005	6.490	4.293	2.898	7.905	8.674	7.576	8.339	6.313	6.501	2.977	2.069	2.858	nan	1.578	2.086	5.557
10265	chr4	89107306	89115250	+	0	NA	Intergenic	(ACTG)n|Simple_repeat|Simple_repeat	-26092	NM_024433	66902	Mm.28500	NM_024433	ENSMUSG00000062937	Mtap	1300019I21Rik|MSAP	methylthioadenosine phosphorylase	protein-coding	7.579	nan	0.426	3.642	6.932	3.639	5.031	4.440	5.430	6.414	3.224	1.968	4.234	9.885	5.490	6.703	3.809	nan	0.980	nan	1.022	1.313	1.208	0.752	6.015
3132	chr11	121089065	121099676	+	0	NA	Intergenic	Intergenic	-13231	NM_145373	209588	Mm.69553	NM_145373	ENSMUSG00000025165	Sectm1a	BC010462	secreted and transmembrane 1A	protein-coding	5.544	12.004	6.574	4.983	3.396	2.918	4.297	nan	4.245	nan	3.667	2.788	6.270	6.532	5.367	6.070	4.651	5.033	3.363	nan	2.519	3.659	2.471	2.331	4.842
8313	chr2	68264842	68265520	+	0	NA	intron (NM_016866, intron 15 of 17)	intron (NM_016866, intron 15 of 17)	160509	NM_020283	26877	Mm.226435	NM_020283	ENSMUSG00000034780	B3galt1	beta3Gal-T1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	protein-coding	3.138	1.884	0.949	0.863	1.300	1.190	3.296	6.092	3.076	3.610	1.784	0.868	3.006	4.249	4.077	2.849	2.610	3.074	0.830	0.403	0.612	1.400	0.720	0.333	3.016
12199	chr6	47251596	47252716	+	0	NA	intron (NM_025771, intron 1 of 3)	intron (NM_025771, intron 1 of 3)	7760	NM_025771	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	1.564	0.587	0.233	0.378	0.181	0.112	2.842	1.169	0.725	0.524	0.297	0.175	2.672	3.462	2.028	1.536	1.646	nan	nan	0.549	0.118	0.493	0.511	0.204	0.875
15543	chr9	115398764	115402519	+	0	NA	Intergenic	L1M5|LINE|L1	18822	NR_130329	100316675		NR_130329	ENSMUSG00000080409	Mir467h	Mirn467h|mmu-mir-467h	microRNA 467h	ncRNA	0.818	12.783	7.275	0.805	0.559	0.088	0.351	0.434	0.634	0.701	0.484	0.320	0.214	0.323	0.362	0.698	0.533	0.874	2.067	2.327	1.547	2.866	3.449	2.054	0.597
1526	chr10	80892617	80894155	+	0	NA	intron (NM_001081688, intron 12 of 17)	intron (NM_001081688, intron 12 of 17)	7583	NM_013895	30055	Mm.142132	NM_013895	ENSMUSG00000020219	Timm13	D10Ertd378e|Tim9|Timm9	translocase of inner mitochondrial membrane 13	protein-coding	7.480	15.549	3.540	13.208	4.276	2.845	6.681	7.332	4.262	19.615	6.630	2.840	6.569	8.960	7.895	10.567	5.830	8.297	5.200	2.012	5.159	6.697	3.222	7.273	19.104
6506	chr17	29529630	29535957	+	0	NA	intron (NM_001162902, intron 1 of 1)	intron (NM_001162902, intron 1 of 1)	16800	NM_001162901	71138	Mm.158581	NM_001162901	ENSMUSG00000079580	Tmem217	4933413N12Rik|EG622644	transmembrane protein 217	protein-coding	7.478	11.902	6.485	6.947	4.776	4.247	6.079	4.076	4.077	4.198	3.155	1.360	5.373	5.437	5.085	6.533	5.726	5.071	2.811	3.191	3.096	3.055	2.174	2.308	7.411
217	chr1	59466425	59468577	+	0	NA	Intergenic	Intergenic	-14646	NM_008057	14369	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	2.943	0.510	0.377	2.171	1.778	1.094	4.496	1.327	1.839	2.115	1.217	0.289	4.543	4.610	4.630	5.828	3.916	3.534	1.063	0.974	0.219	0.716	0.430	0.409	3.666
3245	chr12	25953341	25955512	+	0	NA	Intergenic	B4|SINE|B4	256079	NR_131149	629481	Mm.390460	NR_131149		Gm29687	-	predicted gene, 29687	ncRNA	3.435	2.039	0.587	2.298	1.418	0.477	5.340	5.048	4.330	4.789	5.787	3.690	5.966	7.277	5.367	8.939	5.670	4.827	2.390	2.341	0.574	4.193	1.442	0.733	7.194
8866	chr2	156082286	156085256	+	0	NA	intron (NM_170590, intron 1 of 15)	BC1_Mm|scRNA|scRNA	18558	NM_139151	245865	Mm.330713	NM_139151	ENSMUSG00000038180	Spag4	1700041K21Rik|MNCb-0953|Sun4|mKIAA4118	sperm associated antigen 4	protein-coding	6.886	6.187	3.651	3.611	4.293	2.456	4.016	4.068	3.649	4.719	2.526	1.387	3.650	4.939	4.005	5.227	3.539	nan	1.972	1.977	1.203	1.643	0.933	0.836	4.739
7143	chr18	36007094	36010343	+	0	NA	intron (NR_110349, intron 13 of 14)	B3|SINE|B2	43888	NR_110349	74002	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	1.336	17.801	5.545	3.090	0.970	0.381	0.740	1.607	1.294	2.099	0.917	1.568	0.601	nan	1.605	nan	0.736	1.477	8.265	3.875	3.770	10.539	4.891	4.908	2.209
15146	chr9	59607655	59608753	+	0	NA	TTS (NM_175235)	TTS (NM_175235)	-9080	NR_038075	67287	Mm.439943	NM_029922	ENSMUSG00000025237	Parp6	1700119G14Rik|2310028P13Rik|3110038K10Rik|ARTD17|C030013N01Rik|PARP-6	poly (ADP-ribose) polymerase family, member 6	protein-coding	4.114	0.947	0.465	1.056	2.639	2.232	1.981	1.997	1.664	1.622	0.816	0.620	2.025	3.144	1.468	1.324	2.849	1.632	0.880	1.536	1.004	0.507	1.823	1.261	1.443
158	chr1	51593916	51595971	+	0	NA	Intergenic	Intergenic	-116544	NM_001310549	109019	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	5.236	0.676	0.540	1.655	1.349	0.657	2.471	2.447	2.023	2.351	4.868	1.263	3.032	4.205	2.740	4.864	4.683	nan	nan	0.953	0.766	0.593	0.858	0.442	2.377
10422	chr4	117669132	117671810	+	0	NA	intron (NM_001285901, intron 7 of 7)	intron (NM_001285901, intron 7 of 7)	11754	NM_023178	66233	Mm.29142	NM_023178	ENSMUSG00000009640	Dmap1	1500016M21Rik|DNMAP1|DNMTAP1|Dmtap1|mKIAA1425	DNA methyltransferase 1-associated protein 1	protein-coding	2.141	1.028	0.458	4.119	1.646	0.849	2.522	2.366	3.425	3.714	0.887	2.519	2.457	5.678	3.890	4.477	1.384	3.955	1.514	0.500	0.321	1.266	0.663	0.381	3.967
13360	chr7	87193621	87195261	+	0	NA	Intergenic	PB1D11|SINE|Alu	-52208	NM_001285835	50490	Mm.31748	NM_015760	ENSMUSG00000030562	Nox4	AI648021	NADPH oxidase 4	protein-coding	3.476	4.045	1.854	3.912	3.192	1.743	3.665	4.663	nan	2.889	1.593	1.997	4.601	5.167	4.637	4.615	3.921	4.983	1.134	1.070	0.523	nan	1.394	0.771	4.646
11335	chr5	73026225	73028621	+	0	NA	intron (NM_028194, intron 59 of 62)	intron (NM_028194, intron 59 of 62)	20519	NM_173403	231290	Mm.491387	NM_173403	ENSMUSG00000029219	Slc10a4	E130304D01	solute carrier family 10 (sodium/bile acid cotransporter family), member 4	protein-coding	4.355	4.835	1.352	3.163	3.123	2.058	7.284	3.104	5.327	6.966	0.763	1.347	6.168	6.612	5.237	6.560	6.526	4.430	1.075	1.688	1.905	0.790	0.816	0.730	5.148
6415	chr17	26003959	26006946	+	0	NA	intron (NM_153140, intron 4 of 11)	intron (NM_153140, intron 4 of 11)	16408	NM_153140	215445	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	3.342	2.752	0.699	3.986	1.437	0.821	3.881	3.642	2.311	5.646	1.860	1.549	2.553	4.643	4.953	nan	3.027	3.897	1.981	0.797	0.937	2.936	1.050	1.086	7.638
13943	chr7	151634711	151636179	+	0	NA	Intergenic	Intergenic	6320610	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	1.276	nan	0.583	nan	1.524	1.206	3.475	5.756	1.919	1.201	5.783	3.566	2.911	3.342	1.751	1.860	1.631	1.461	1.811	1.283	1.802	3.577	1.189	1.160	2.210
3658	chr12	103415378	103419862	+	0	NA	exon (NM_001159502, exon 5 of 9)	exon (NM_001159502, exon 5 of 9)	8160	NM_001159502	27225	Mm.3935	NM_020494	ENSMUSG00000041645	Ddx24	1700055J08Rik|2510027P10Rik|AI649272	DEAD (Asp-Glu-Ala-Asp) box polypeptide 24	protein-coding	7.396	0.648	0.375	4.345	2.419	1.070	3.489	nan	nan	6.348	0.534	0.452	5.724	4.954	3.455	7.434	6.160	5.353	0.997	1.076	0.783	2.307	0.802	0.676	10.015
36	chr1	17439884	17442398	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-160760	NM_053191	94227	Mm.442452	NM_053191	ENSMUSG00000067780	Pi15	P24TI|P25TI|PI-15|SugarCrisp	peptidase inhibitor 15	protein-coding	nan	0.607	0.580	0.486	0.250	0.283	0.298	0.305	0.517	0.695	6.823	3.794	0.302	0.561	0.488	0.524	0.700	0.468	0.742	0.378	0.225	0.318	0.226	0.392	0.204
1418	chr10	74426257	74432012	+	0	NA	intron (NM_001142740, intron 18 of 31)	MTEa-int|LTR|ERVL-MaLR	-538097	NM_010311	14687	Mm.32595	NM_010311	ENSMUSG00000040009	Gnaz	AI847979|Gz	guanine nucleotide binding protein, alpha z subunit	protein-coding	0.709	10.360	5.236	nan	0.496	0.149	0.493	0.666	0.411	0.955	0.422	0.381	0.300	0.512	nan	0.949	0.738	0.694	nan	1.006	0.954	1.868	1.959	1.240	1.139
472	chr1	95449041	95451872	+	0	NA	Intergenic	Intergenic	136828	NM_026321	67698	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	nan	nan	0.695	0.564	0.299	0.217	0.448	nan	0.500	0.419	0.399	0.419	0.253	0.475	0.329	nan	0.803	nan	4.766	2.004	1.100	nan	5.436	2.657	nan
1368	chr10	66633077	66642181	+	0	NA	Intergenic	L1MA5|LINE|L1	282755	NR_138560	68488	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	5.130	1.294	1.192	2.559	3.331	2.122	3.803	4.013	3.561	3.939	2.878	2.072	4.415	5.697	4.324	4.155	5.168	4.555	1.255	1.017	0.819	0.899	0.954	0.669	3.011
8446	chr2	91535329	91538477	+	0	NA	Intergenic	Intergenic	-9419	NM_001165989	75786	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	5.952	0.868	0.242	4.005	4.521	3.145	4.920	7.602	4.842	4.700	1.463	1.242	7.204	7.366	7.094	8.625	7.732	7.034	0.722	0.464	0.494	0.537	0.645	0.440	6.253
7875	chr19	53602887	53607260	+	0	NA	intron (NM_007790, intron 2 of 28)	MTA_Mm-int|LTR|ERVL-MaLR	4677	NM_007790	13006	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	6.700	6.559	1.482	4.563	2.020	1.037	6.293	11.048	3.307	6.730	3.327	2.605	5.125	7.472	7.578	7.534	3.644	6.739	1.629	1.389	1.360	2.913	1.182	1.586	12.973
13567	chr7	117097850	117100289	+	0	NA	Intergenic	MTEa|LTR|ERVL-MaLR	-281910	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	6.196	0.832	0.693	4.485	4.936	4.291	3.283	4.839	4.178	4.778	1.412	1.173	4.852	5.203	5.551	6.213	7.393	6.350	1.243	1.561	1.449	2.284	1.116	0.870	6.045
132	chr1	39978319	39981203	+	0	NA	intron (NM_001252200, intron 5 of 31)	intron (NM_001252200, intron 5 of 31)	78848	NM_008696	26921	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	7.114	6.600	3.362	4.721	4.267	1.833	3.253	2.085	2.394	3.622	3.917	1.940	1.993	3.320	2.653	2.741	2.283	3.147	2.150	2.878	1.524	2.708	1.721	0.831	3.774
711	chr1	140043950	140060686	+	0	NA	Intergenic	RLTR13A|LTR|ERVK	131093	NM_009888	12628	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	3.056	7.309	4.751	nan	1.236	0.711	0.751	0.908	1.686	1.589	1.382	0.547	0.949	nan	1.152	nan	1.518	1.957	0.633	0.933	0.609	0.702	0.271	0.284	nan
1791	chr10	119577461	119578736	+	0	NA	intron (NM_133442, intron 1 of 21)	intron (NM_133442, intron 1 of 21)	124064	NM_001277293	74053	Mm.196692	NM_028736	ENSMUSG00000034813	Grip1	4931400F03Rik|GRIP|eb	glutamate receptor interacting protein 1	protein-coding	5.182	0.905	0.603	1.464	1.104	0.653	4.231	3.394	3.204	2.785	2.051	2.059	3.163	3.498	3.290	3.012	2.258	2.534	1.424	1.475	0.480	1.208	1.364	0.754	1.667
12526	chr6	99006022	99008347	+	0	NA	intron (NM_001347345, intron 9 of 19)	intron (NM_001347345, intron 9 of 19)	21114	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	4.249	5.935	3.999	3.578	5.712	2.731	4.828	3.227	3.138	4.626	2.964	1.400	3.498	5.556	4.992	8.304	5.069	5.234	nan	nan	1.288	0.983	1.038	0.838	4.528
5412	chr15	78756413	78759196	+	0	NA	intron (NM_008595, intron 6 of 7)	MIR|SINE|MIR	15641	NM_008595	17305	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	4.945	9.074	2.259	6.376	1.727	1.187	5.576	3.284	2.133	3.405	nan	2.263	4.247	4.350	6.056	4.989	2.592	4.575	2.110	2.051	2.429	3.430	1.227	1.194	5.792
11864	chr5	139345834	139347881	+	0	NA	Intergenic	Intergenic	-1691	NM_197980	68033	Mm.261064	NM_197980	ENSMUSG00000045438	Cox19	1810074D02Rik|2810437L13Rik	cytochrome c oxidase assembly protein 19	protein-coding	3.956	0.690	0.263	1.990	0.795	0.695	6.071	4.553	2.301	3.741	5.978	1.300	5.580	6.082	4.816	5.952	4.771	3.688	2.226	0.928	0.586	1.658	3.165	1.570	6.022
9036	chr2	167727097	167729722	+	0	NA	Intergenic	MIRb|SINE|MIR	37232	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	4.362	1.058	0.796	4.264	1.973	1.581	2.432	5.599	3.533	4.948	2.604	2.007	6.126	6.822	5.016	5.643	4.142	6.947	nan	0.481	1.392	1.009	0.852	0.984	8.302
2180	chr11	52172893	52175497	+	0	NA	Intergenic	MTC|LTR|ERVL-MaLR	-16288	NR_034155	257871	Mm.253576	NR_034155		Olfr1372-ps1	GA_x5J8B7TR6JS-3-632|MOR256-54P|NP_TR6JSE50FPA	olfactory receptor 1372, pseudogene 1	pseudo	11.284	10.983	2.502	15.063	6.080	4.977	9.805	11.634	7.523	14.152	9.422	6.207	9.872	12.182	11.028	13.314	8.054	11.058	7.482	3.890	6.436	10.106	4.340	6.305	15.864
8936	chr2	163124225	163126729	+	0	NA	Intergenic	RLTR12D|LTR|ERVK	-35876	NM_026630	68236	Mm.33648	NM_026630	ENSMUSG00000070708	Gtsf1l	2410116G06Rik	gametocyte specific factor 1-like	protein-coding	0.410	10.265	5.381	0.734	0.157	0.103	0.278	0.428	0.265	0.336	0.452	0.362	0.173	nan	0.387	0.658	0.371	nan	nan	0.825	0.656	1.183	1.149	0.834	nan
1428	chr10	74880819	74882645	+	0	NA	Intergenic	Intergenic	-85499	NM_010311	14687	Mm.32595	NM_010311	ENSMUSG00000040009	Gnaz	AI847979|Gz	guanine nucleotide binding protein, alpha z subunit	protein-coding	0.438	1.101	0.704	nan	0.468	0.423	0.299	0.447	0.798	0.288	0.345	0.392	0.315	0.226	nan	0.477	0.388	0.509	nan	2.643	1.624	1.456	7.111	5.605	0.346
2769	chr11	100065045	100069734	+	0	NA	Intergenic	Intergenic	-16838	NM_010659	16660	Mm.439673	NM_010659	ENSMUSG00000048981	Krt31	Ha1|Kha1|Krt1-1|MKHA-1	keratin 31	protein-coding	0.166	nan	0.198	0.297	0.126	0.014	0.450	0.578	0.389	0.405	8.160	0.713	0.188	0.558	0.612	0.652	nan	0.288	0.319	nan	0.223	0.712	nan	nan	0.422
7700	chr19	32269088	32277697	+	0	NA	intron (NM_001168525, intron 2 of 9)	intron (NM_001168525, intron 2 of 9)	-62379	NM_001168526	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	5.980	2.570	1.338	6.620	4.433	2.577	5.150	7.793	5.544	4.711	nan	2.432	5.471	6.093	5.726	6.501	6.636	6.489	nan	1.776	0.968	3.328	nan	1.117	5.869
9152	chr3	18524189	18525372	+	0	NA	Intergenic	Intergenic	-44303	NR_040544	73959	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	4.910	1.832	0.684	5.089	1.576	0.337	2.806	2.255	3.685	3.405	9.932	3.289	1.993	3.017	2.767	2.903	2.197	3.990	2.033	3.469	1.455	5.174	3.442	2.356	2.031
4081	chr13	47023625	47030492	+	0	NA	intron (NM_016785, intron 8 of 8)	RLTR17B_Mm|LTR|ERVK	-12208	NM_175340	105193	Mm.25593	NM_175340	ENSMUSG00000044231	Nhlrc1	AI505271|B230309E09Rik|EPM2B	NHL repeat containing 1	protein-coding	6.556	1.816	0.477	6.900	3.576	1.808	5.740	5.489	5.172	9.715	3.002	1.579	6.762	9.621	8.361	9.567	5.466	8.159	2.181	nan	1.391	2.111	1.496	1.640	12.909
12019	chr5	152208191	152216082	+	0	NA	Intergenic	Intergenic	-560928	NM_027009	69263	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	3.173	1.109	0.805	2.574	1.845	1.482	4.661	3.474	nan	2.209	1.620	1.430	4.073	3.682	4.566	5.370	3.955	3.578	1.508	1.707	1.484	2.170	1.463	1.063	nan
11729	chr5	125521067	125522021	+	0	NA	Intergenic	Intergenic	-10874	NM_001190352	208151	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding	4.157	8.143	5.869	1.505	2.397	1.868	1.647	3.365	0.825	nan	1.428	0.912	0.895	2.739	1.924	2.604	1.879	2.113	7.938	8.014	5.004	5.053	5.079	4.950	3.084
9486	chr3	90051306	90054168	+	0	NA	promoter-TSS (NM_001165987)	promoter-TSS (NM_001165987)	-65	NM_001287086	99650	Mm.300083	NM_025762	ENSMUSG00000027942	4933434E20Rik	5730552F22Rik|AI462154|NICE-3|NS5ATP4	RIKEN cDNA 4933434E20 gene	protein-coding	9.639	12.044	4.312	11.520	8.199	7.820	9.422	8.345	7.460	8.542	8.276	4.626	9.666	10.353	9.724	10.161	7.478	9.956	nan	2.597	3.821	6.953	3.481	4.217	14.049
14600	chr8	112391540	112393542	+	0	NA	Intergenic	Intergenic	177034	NR_132433	102640845	Mm.405615	NR_132433	ENSMUSG00000098075	Gm26994	-	predicted gene, 26994	ncRNA	6.913	8.604	2.973	7.608	3.947	3.631	4.029	5.619	3.305	8.269	2.587	2.248	4.444	5.169	5.951	8.938	6.228	7.003	5.162	5.018	5.514	8.960	4.989	6.371	11.797
4992	chr14	122194686	122199058	+	0	NA	intron (NM_029556, intron 1 of 7)	B1_Mus1|SINE|Alu	15178	NM_029556	69634	Mm.34608	NM_029556	ENSMUSG00000025545	Clybl	0610033J05Rik|2310014M14Rik|AI256068|Clb	citrate lyase beta like	protein-coding	5.809	6.151	2.042	8.625	2.619	1.411	4.903	11.401	4.866	8.390	5.199	3.716	6.382	8.804	8.923	9.959	4.463	6.895	3.395	1.537	1.336	4.174	2.793	2.390	11.314
2279	chr11	60539338	60543854	+	0	NA	intron (NM_172943, intron 1 of 3)	intron (NM_172943, intron 1 of 3)	3913	NM_172943	268420	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	8.521	9.221	2.618	9.189	5.118	2.868	7.621	8.123	5.953	10.278	5.081	2.850	7.526	10.391	8.356	11.025	6.289	8.928	nan	1.792	3.057	4.453	2.135	2.489	11.849
5696	chr15	101192415	101220268	+	0	NA	intron (NM_007395, intron 7 of 8)	RLTR12A|LTR|ERVK	12472	NR_105927	102466774		NR_105927	ENSMUSG00000106563	Mir6962	mmu-mir-6962	microRNA 6962	ncRNA	4.154	1.633	0.507	6.375	3.066	1.688	5.025	7.095	3.022	2.946	4.315	2.457	4.363	5.522	4.643	4.341	2.416	5.419	5.434	2.518	1.786	7.230	3.600	2.372	4.815
6126	chr16	52448279	52454448	+	0	NA	intron (NM_009655, intron 1 of 15)	intron (NM_009655, intron 1 of 15)	1718	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	8.875	4.362	1.755	6.580	3.807	1.837	5.641	nan	6.487	8.869	4.900	5.029	9.753	9.599	10.196	11.350	7.547	10.185	2.805	2.526	1.541	3.726	3.329	2.245	12.827
998	chr1	186675400	186678221	+	0	NA	intron (NM_009367, intron 1 of 6)	intron (NM_009367, intron 1 of 6)	29179	NM_009367	21808	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	6.308	1.903	0.977	4.912	2.609	1.341	4.327	7.426	3.991	4.229	2.723	2.066	6.633	6.227	4.828	8.026	4.715	5.416	1.505	1.947	1.118	2.128	1.979	1.734	6.135
6792	chr17	66262016	66266133	+	0	NA	Intergenic	B1_Mur1|SINE|Alu	140554	NM_001003919	320209	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	2.017	1.140	0.733	2.868	2.125	1.584	1.611	3.389	nan	2.730	7.373	2.701	1.438	3.034	2.365	3.606	1.488	2.972	1.243	0.945	1.119	1.341	0.723	0.590	2.555
1789	chr10	118675647	118678331	+	0	NA	Intergenic	Intergenic	-120464	NR_104123	103214	Mm.30529	NR_104123		Tmevpg1	AI447422	Theiler's murine encephalomyelitis virus persistence candidate gene 1	ncRNA	8.803	13.012	4.100	9.886	4.174	2.916	6.882	6.943	3.884	10.807	6.578	2.717	7.274	8.076	9.727	9.961	6.130	8.572	6.306	3.045	3.116	7.982	4.338	5.697	15.353
4621	chr14	45669062	45670402	+	0	NA	Intergenic	RSINE1|SINE|B4	-11589	NM_001042719	114874	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	6.408	6.398	1.569	3.897	1.609	0.697	4.036	3.975	3.742	2.708	6.174	0.911	2.756	3.945	6.895	4.103	2.282	3.532	0.996	0.597	0.644	1.120	0.540	0.172	5.128
4831	chr14	73522028	73524973	+	0	NA	intron (NM_172527, intron 3 of 4)	intron (NM_172527, intron 3 of 4)	13451	NM_026119	67381	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	5.559	6.840	3.519	4.652	2.946	2.179	3.305	4.509	4.095	4.122	5.438	2.782	3.915	4.866	3.651	3.670	2.960	4.143	3.556	1.721	1.573	1.513	2.254	1.374	3.383
7385	chr18	74799983	74803057	+	0	NA	intron (NM_177470, intron 8 of 9)	intron (NM_177470, intron 8 of 9)	22308	NM_177470	52538	Mm.245724	NM_177470	ENSMUSG00000036880	Acaa2	0610011L04Rik|AI255831|AI265397|D18Ertd240e	acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	protein-coding	1.676	nan	0.571	5.156	3.369	1.053	4.643	2.669	3.141	5.986	0.718	0.486	7.436	5.580	6.821	5.874	2.704	4.162	0.767	nan	0.127	1.755	0.640	0.187	6.218
12102	chr6	29769901	29779822	+	0	NA	intron (NM_001171000, intron 1 of 16)	RSINE1|SINE|B4	6418	NM_001171000	74340	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	3.858	1.897	1.390	2.089	2.512	1.681	3.127	7.247	2.829	2.544	1.920	1.209	4.821	4.519	4.297	7.063	6.377	3.587	nan	1.047	1.162	0.635	0.737	0.690	2.189
11463	chr5	96830222	96833532	+	0	NA	intron (NM_013470, intron 10 of 12)	RLTR20A2|LTR|ERVK	38492	NM_013470	11745	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	0.511	0.714	0.427	0.213	0.202	0.036	0.332	0.546	0.408	0.370	0.156	0.231	0.182	0.396	0.654	0.565	0.622	0.557	6.036	4.030	2.039	2.616	5.582	3.595	0.344
2076	chr11	32612158	32613129	+	0	NA	intron (NM_009288, intron 13 of 18)	intron (NM_009288, intron 13 of 18)	-29912	NM_001271348	103583	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	2.731	0.660	0.747	1.356	1.992	1.143	1.343	1.011	1.802	1.838	0.384	0.517	1.690	3.821	1.843	2.618	2.416	2.184	0.754	1.988	0.757	1.362	0.267	0.304	2.412
3947	chr13	34281526	34282676	+	0	NA	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	63081	NM_001033167	73102	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	2.494	nan	0.205	2.518	1.742	1.121	4.054	4.054	3.489	3.187	2.260	3.671	4.302	3.196	3.141	3.605	1.827	3.634	1.460	1.271	0.456	2.063	1.154	0.563	2.591
4757	chr14	64331411	64335389	+	0	NA	intron (NM_001253712, intron 1 of 5)	intron (NM_001253712, intron 1 of 5)	83556	NM_001253716	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0.251	0.519	0.280	0.324	0.071	0.063	0.166	0.312	0.236	0.256	0.063	0.130	0.104	0.155	0.216	0.443	0.137	0.237	5.502	nan	1.695	4.909	5.165	4.260	0.454
6858	chr17	74925611	74929963	+	0	NA	Intergenic	Lx8|LINE|L1	-77742	NM_019919	268977	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	9.524	10.348	5.062	6.949	6.946	5.140	10.392	nan	nan	9.414	6.487	4.716	7.205	9.568	7.943	10.144	10.185	7.237	5.133	4.017	4.059	5.020	5.216	5.632	12.905
6733	chr17	50773547	50774477	+	0	NA	intron (NM_028162, intron 18 of 21)	Lx3C|LINE|L1	75331	NM_001297747	12228	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	1.009	1.023	0.334	1.823	1.568	0.830	3.913	1.708	1.943	1.207	0.799	0.111	0.657	3.763	4.979	5.078	1.126	4.141	2.496	0.879	0.263	2.396	1.740	0.617	1.075
1838	chr10	126599470	126606136	+	0	NA	Intergenic	Intergenic	107588	NR_105841	102465224		NR_105841	ENSMUSG00000098756	Mir378d	Gm27650|mmu-mir-378d	microRNA 378d	ncRNA	9.708	11.614	4.150	7.740	3.559	1.895	8.195	6.278	4.013	8.397	7.380	2.820	8.859	9.910	8.608	8.943	6.904	9.217	5.746	3.176	2.563	4.265	nan	3.979	14.165
15853	chrX	159195599	159199823	+	0	NA	Intergenic	RSINE1|SINE|B4	-58071	NM_148945	110651	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	4.044	5.806	2.063	3.254	2.379	1.740	3.652	5.055	1.823	4.662	2.668	2.179	3.585	4.777	4.468	4.765	2.612	3.584	2.685	1.692	1.691	3.534	1.888	2.763	5.611
1773	chr10	117131837	117133971	+	0	NA	intron (NM_177798, intron 1 of 9)	B2_Mm2|SINE|B2	15570	NM_177798	327826	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	2.331	0.685	0.752	2.047	2.365	1.705	2.940	3.261	2.587	3.206	0.784	1.284	3.485	3.391	2.548	3.464	2.804	3.069	0.822	0.329	0.494	0.557	0.261	0.309	1.787
3883	chr13	23712036	23715287	+	0	NA	Intergenic	Intergenic	-2807	NM_010424	15216	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	6.764	11.163	4.731	9.785	2.894	1.528	4.086	5.060	5.419	6.122	6.256	3.287	4.702	9.393	8.905	8.579	5.709	9.459	5.886	3.515	1.687	6.292	3.726	1.918	10.374
14562	chr8	108859975	108862940	+	0	NA	intron (NM_007496, intron 4 of 9)	ID_B1|SINE|B4	-75403	NR_037295	100526511		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	2.711	3.799	2.105	1.810	1.131	0.624	2.484	3.872	1.099	1.410	0.684	1.003	1.921	2.387	2.672	2.537	2.957	2.008	6.282	5.737	5.444	10.383	6.876	6.353	2.465
12373	chr6	85360921	85364501	+	0	NA	intron (NM_001003955, intron 1 of 5)	intron (NM_001003955, intron 1 of 5)	11923	NM_177466	52055	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	3.519	0.624	0.475	nan	1.662	1.104	5.137	3.104	2.151	3.054	0.631	0.789	3.723	5.381	4.028	4.102	4.142	nan	nan	1.054	0.648	0.384	0.681	0.428	3.302
3166	chr12	8350912	8354230	+	0	NA	Intergenic	Intergenic	39138	NM_021429	58240	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	5.440	6.428	2.799	8.322	2.723	2.149	1.477	1.358	3.032	3.286	2.223	1.116	0.914	2.259	1.989	2.179	1.519	4.447	0.643	1.636	2.105	1.028	0.889	1.065	3.632
3704	chr12	107268071	107274398	+	0	NA	Intergenic	Intergenic	464254	NR_045973	74968	Mm.359821	NR_045973	ENSMUSG00000085641	4930465M20Rik	4930431H15Rik	RIKEN cDNA 4930465M20 gene	ncRNA	3.427	3.629	1.365	nan	0.894	0.233	1.596	nan	nan	nan	1.326	0.823	1.607	nan	2.886	3.742	3.347	2.638	0.941	0.805	0.441	0.626	0.275	0.168	5.232
15412	chr9	99030688	99033947	+	0	NA	intron (NM_001080776, intron 1 of 7)	intron (NM_001080776, intron 1 of 7)	3373	NM_001080776	382097	Mm.293727	NM_001080776	ENSMUSG00000044860	Gm1123	AV052824|CLSP	predicted gene 1123	protein-coding	3.832	1.054	0.926	2.381	2.569	1.208	2.197	2.392	3.066	2.486	3.678	1.289	3.685	3.458	2.469	3.689	2.352	4.463	0.926	0.777	0.448	0.738	1.057	0.725	3.872
7279	chr18	60538152	60542187	+	0	NA	intron (NM_026302, intron 3 of 12)	Lx7|LINE|L1	13948	NM_026302	67665	Mm.272801	NM_026302	ENSMUSG00000024603	Dctn4	1110001K06Rik|4930547K17Rik|C130039E17Rik|p62	dynactin 4	protein-coding	7.082	nan	1.237	nan	3.245	2.241	2.957	5.667	2.893	2.843	0.808	0.673	nan	2.734	1.831	2.327	1.728	nan	nan	1.064	1.025	nan	0.696	0.510	4.127
3392	chr12	71074484	71080665	+	0	NA	intron (NM_001081195, intron 21 of 23)	MT2_Mm|LTR|ERVL	-33854	NM_029227	75266	Mm.402075	NM_029227	ENSMUSG00000021078	Tomm20l	4930553D19Rik	translocase of outer mitochondrial membrane 20 homolog (yeast)-like	protein-coding	2.435	7.759	5.519	1.797	1.760	1.360	0.803	0.911	1.567	1.351	1.450	1.223	1.271	1.324	1.163	nan	2.017	1.955	2.926	1.539	1.650	1.354	1.850	1.507	1.156
6374	chr17	23324082	23325281	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-12368	NM_001102584	666002	Mm.469838	NM_001102584	ENSMUSG00000091945	Vmn2r114	EG666002|V2Rp3	vomeronasal 2, receptor 114	protein-coding	3.544	0.482	0.311	1.862	1.102	0.378	3.119	2.009	3.497	2.622	1.704	2.242	3.036	2.799	3.795	3.651	2.404	4.162	1.918	0.651	0.199	0.686	0.627	0.164	1.138
12493	chr6	94213915	94214965	+	0	NA	intron (NR_130996, intron 1 of 1)	MIR|SINE|MIR	23002	NR_130996	78178	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	3.559	0.355	0.237	2.428	1.342	0.440	4.456	6.429	1.970	3.086	5.231	1.030	3.247	4.416	4.011	5.971	2.385	4.711	nan	nan	0.481	0.874	0.596	0.187	4.929
2860	chr11	103826257	103829522	+	0	NA	intron (NM_008740, intron 18 of 20)	intron (NM_008740, intron 18 of 20)	53714	NM_009521	22415	Mm.159091	NM_009521	ENSMUSG00000000125	Wnt3	Int-4|Wnt-3	wingless-type MMTV integration site family, member 3	protein-coding	5.655	5.248	1.802	nan	4.952	3.550	3.641	4.032	nan	nan	4.294	2.239	3.790	6.098	5.407	6.018	4.438	nan	3.248	1.669	1.900	nan	2.766	2.766	5.790
10855	chr4	144602483	144619193	+	0	NA	Intergenic	Intergenic	-2869	NM_001081248	435815	Mm.439623	NM_001081248	ENSMUSG00000070609	Gm13177	OTTMUSG00000010747	predicted gene 13177	protein-coding	7.411	2.383	1.053	6.393	5.312	2.753	4.812	6.448	7.022	8.630	4.486	1.926	7.054	8.864	7.521	7.476	3.184	8.988	2.868	1.008	0.756	3.472	2.016	1.287	6.203
8225	chr2	44959734	44969344	+	0	NA	Intergenic	Intergenic	58638	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	6.866	4.513	2.121	5.824	4.188	2.461	2.311	1.595	2.563	nan	1.957	1.048	1.815	3.384	2.309	2.748	2.816	3.386	1.276	2.561	2.117	0.943	1.124	0.912	3.573
13304	chr7	77494282	77498603	+	0	NA	Intergenic	Intergenic	1081396	NM_008746	18213	Mm.33496	NM_008746	ENSMUSG00000059146	Ntrk3	AW125844|Ntrk3_tv3|TrkC	neurotrophic tyrosine kinase, receptor, type 3	protein-coding	5.638	1.711	0.554	5.326	4.380	2.593	5.852	5.183	3.586	5.747	5.265	3.387	4.928	6.264	4.493	5.474	5.817	5.337	2.320	3.353	2.575	3.830	2.793	2.782	5.998
14541	chr8	108269434	108272323	+	0	NA	Intergenic	Intergenic	313799	NR_077224	109215	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	6.445	2.979	2.035	3.952	5.334	3.802	2.572	5.892	3.364	4.014	1.590	1.581	3.552	5.872	3.337	5.218	4.758	4.198	3.542	5.674	4.618	nan	5.573	4.720	4.217
4253	chr13	75875519	75877021	+	0	NA	intron (NM_028493, intron 10 of 11)	intron (NM_028493, intron 10 of 11)	36384	NM_053108	93692	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	5.913	6.419	4.283	4.337	6.037	2.341	5.121	4.760	3.838	2.530	1.724	2.740	5.835	7.443	5.711	4.057	2.749	4.246	2.017	2.619	1.038	1.140	1.653	1.460	3.354
6450	chr17	27266681	27267736	+	0	NA	Intergenic	IAPEz-int|LTR|ERVK	-19142	NR_131118	319720	Mm.394996	NR_131118		9630028I04Rik	-	RIKEN cDNA 9630028I04 gene	ncRNA	0.746	1.251	0.401	0.929	0.834	0.377	1.254	0.706	0.412	0.885	0.590	0.349	0.489	3.031	1.069	1.204	0.337	1.030	2.738	1.783	0.574	2.691	1.717	0.575	1.260
7412	chr18	79219211	79224797	+	0	NA	Intergenic	Charlie29a|DNA|hAT-Charlie	-112613	NM_053099	240427	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	7.132	nan	0.829	3.684	4.198	2.797	3.858	7.724	3.740	4.718	3.307	3.598	5.698	5.683	3.329	5.952	4.639	7.497	2.399	nan	1.070	0.880	1.865	1.709	6.709
12578	chr6	112972518	112976627	+	0	NA	Intergenic	RSINE1|SINE|B4	-27306	NM_080448	259302	Mm.236401	NM_080448	ENSMUSG00000030257	Srgap3	AI452337|Arhgap14|D130026O08Rik|Gbi|MEGAP|WRP|mKIAA0411	SLIT-ROBO Rho GTPase activating protein 3	protein-coding	3.608	0.625	0.656	2.145	3.891	2.717	4.064	6.066	4.049	3.547	4.946	4.957	3.560	4.986	3.802	3.076	3.489	5.118	nan	0.996	0.691	0.900	0.744	0.807	nan
6741	chr17	56097975	56099555	+	0	NA	intron (NM_001331053, intron 12 of 15)	intron (NM_001331053, intron 12 of 15)	11037	NM_020568	57435	Mm.12966	NM_020568	ENSMUSG00000002831	Plin4	S3-12|mKIAA1881	perilipin 4	protein-coding	6.255	9.282	4.395	6.497	2.884	2.306	5.426	4.992	5.251	4.619	4.331	3.046	5.058	5.903	8.151	9.362	6.488	6.814	5.180	2.329	2.570	5.248	3.467	2.805	9.192
3974	chr13	36825063	36828501	+	0	NA	Intergenic	Lx8|LINE|L1	-92305	NM_153529	68404	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	3.226	nan	0.520	1.754	1.906	0.923	nan	nan	nan	2.827	0.267	2.944	4.359	9.038	1.739	7.107	6.267	3.451	0.480	0.345	0.277	0.391	0.312	0.228	10.458
3409	chr12	71981318	71983356	+	0	NA	intron (NM_172464, intron 22 of 25)	RLTR20A4|LTR|ERVK	88654	NM_181752	238252	Mm.390508	NM_181752	ENSMUSG00000043398	Gpr135	PAFR	G protein-coupled receptor 135	protein-coding	7.790	1.411	0.384	3.777	2.227	1.573	7.145	3.460	2.662	2.782	3.008	0.774	5.282	5.631	6.214	7.172	5.260	5.166	1.737	1.781	1.331	3.136	2.709	2.889	12.743
3918	chr13	30245470	30247959	+	0	NA	TTS (NM_153546)	TTS (NM_153546)	-89642	NM_177322	11607	Mm.35062	NM_177322	ENSMUSG00000049115	Agtr1a	1810074K20Rik|AG2S|AI551199|AT1|AT1a|AT2R1|AT2R1A|Agtr-1a|Agtr1|Angtr-1a	angiotensin II receptor, type 1a	protein-coding	3.120	1.117	0.723	1.467	2.244	1.493	2.633	2.555	1.899	1.846	2.212	2.148	2.770	5.243	4.415	3.359	2.039	3.232	0.807	0.985	0.459	0.639	0.574	0.549	2.429
8098	chr2	30751314	30758773	+	0	NA	Intergenic	Intergenic	33833	NR_037272	100526499		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	7.107	1.499	0.742	4.075	4.750	4.061	10.671	15.569	5.118	5.631	5.668	6.590	11.046	8.456	7.325	9.507	5.762	6.976	2.601	1.380	1.920	2.622	2.584	2.776	9.335
12741	chr6	128540432	128542888	+	0	NA	intron (NM_001001179, intron 33 of 35)	Lx8|LINE|L1	-14940	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	1.728	nan	0.478	1.199	1.129	1.107	2.588	4.397	1.812	1.717	1.365	1.062	1.894	3.412	3.777	4.092	4.012	1.954	1.193	1.340	1.276	1.264	1.795	1.788	1.489
9419	chr3	85860511	85862151	+	0	NA	Intergenic	ORR1D2|LTR|ERVL-MaLR	26187	NM_177130	320302	Mm.482978	NM_177130	ENSMUSG00000031286	Glt28d2	4732486J07Rik|Glt28d1l	glycosyltransferase 28 domain containing 2	protein-coding	4.020	0.792	0.643	2.899	3.710	1.228	3.868	2.606	2.972	3.423	1.007	0.892	4.946	6.098	4.174	5.304	3.375	4.805	nan	1.083	0.547	0.794	0.642	0.467	4.274
8106	chr2	30990513	31000940	+	0	NA	intron (NM_028846, intron 1 of 24)	intron (NM_028846, intron 1 of 24)	13447	NM_028846	74270	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	4.204	14.112	6.331	4.064	1.969	1.080	2.133	2.736	nan	3.167	1.868	1.274	1.554	2.412	2.534	3.072	2.795	2.420	1.437	1.586	1.488	1.662	0.888	1.124	4.637
5011	chr15	5076086	5078733	+	0	NA	Intergenic	Charlie12|DNA|hAT-Charlie	-13636	NM_001243837	109828	Mm.208034	NM_001243837	ENSMUSG00000079105	C7	A530026G17|Gm1238	complement component 7	protein-coding	5.282	1.011	1.048	2.228	6.027	4.031	4.298	6.053	3.349	2.831	2.372	1.928	5.802	6.129	2.444	2.752	5.835	2.593	0.860	0.961	0.893	0.447	0.734	0.979	1.919
5419	chr15	78970627	78972768	+	0	NA	intron (NM_001039156, intron 8 of 24)	intron (NM_001039156, intron 8 of 24)	-11359	NM_001024716	110253	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	7.043	nan	2.268	6.656	3.544	2.104	6.411	11.311	3.609	5.205	nan	3.608	6.146	7.150	6.889	6.269	5.803	6.080	3.820	2.599	2.492	nan	3.569	3.199	7.536
5442	chr15	79955211	79956741	+	0	NA	Intergenic	RMER17B2|LTR|ERVK	-23330	NM_144811	52609	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	2.004	nan	0.585	nan	1.055	0.729	4.820	4.038	1.605	1.790	nan	0.753	3.571	3.864	3.967	3.397	3.794	1.694	0.755	0.411	0.484	nan	0.566	0.645	2.076
14664	chr8	121984684	121992875	+	0	NA	intron (NM_001285983, intron 4 of 12)	intron (NM_001285983, intron 4 of 12)	10755	NR_106096	102466915		NR_106096	ENSMUSG00000099140	Mir7237	Gm27482|mmu-mir-7237	microRNA 7237	ncRNA	0.343	0.832	0.242	0.544	0.239	0.257	0.246	0.447	0.252	0.261	0.287	0.198	0.206	0.325	0.382	nan	0.192	0.394	2.091	1.894	1.722	7.815	1.302	0.961	0.805
4490	chr14	18748963	18753708	+	0	NA	intron (NM_144839, intron 3 of 5)	L1_Mus2|LINE|L1	142292	NM_144839	218793	Mm.23551	NM_144839	ENSMUSG00000058317	Ube2e2	BC016265	ubiquitin-conjugating enzyme E2E 2	protein-coding	4.790	0.450	0.470	1.257	1.230	0.520	5.323	8.267	nan	1.801	2.101	2.331	4.257	4.432	5.028	5.288	3.067	3.197	1.036	0.668	0.568	nan	0.586	0.342	4.048
15227	chr9	66438560	66449713	+	0	NA	intron (NM_145617, intron 34 of 77)	MER68-int|LTR|ERVL	70457	NM_175206	74165	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	8.218	5.114	1.766	5.619	3.140	2.156	6.699	7.102	5.848	7.904	4.782	3.090	6.185	7.660	nan	8.099	4.937	6.212	nan	1.912	1.888	2.854	1.411	1.979	8.676
5270	chr15	66640847	66649149	+	0	NA	3' UTR (NM_001081409, exon 21 of 21)	3' UTR (NM_001081409, exon 21 of 21)	-25772	NM_009375	21819	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	6.106	10.618	3.668	4.287	1.242	0.404	1.325	1.305	2.875	3.162	2.463	0.943	1.551	2.576	2.573	2.735	1.977	3.376	1.066	1.485	0.910	0.857	0.395	0.217	3.081
8955	chr2	163908501	163911074	+	0	NA	intron (NM_183023, intron 1 of 5)	intron (NM_183023, intron 1 of 5)	8896	NM_183023	241770	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	5.364	15.472	8.365	5.645	3.595	2.809	5.506	4.306	4.370	5.065	3.137	2.378	6.022	5.902	5.892	7.194	4.945	4.958	nan	2.186	2.774	1.024	1.542	2.156	5.907
729	chr1	152239143	152241530	+	0	NA	Intergenic	(GA)n|Simple_repeat|Simple_repeat	146346	NM_025677	66637	Mm.379120	NM_025677	ENSMUSG00000014980	Tsen15	5730449L18Rik|AL023077|Sen15	tRNA splicing endonuclease subunit 15	protein-coding	9.926	10.538	3.319	8.466	3.410	1.649	6.358	6.624	5.264	8.384	5.135	3.448	8.590	7.740	9.645	12.762	6.609	9.693	5.209	1.969	1.645	6.122	2.946	2.614	11.955
2351	chr11	68638854	68640491	+	0	NA	Intergenic	B3|SINE|B2	-52243	NM_175260	77579	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	1.767	0.850	0.291	4.465	2.418	0.645	1.787	1.462	1.914	1.939	1.270	1.693	2.368	4.421	3.262	2.195	1.502	2.877	6.899	3.913	2.541	8.062	nan	1.608	3.262
12010	chr5	151943600	151949315	+	0	NA	Intergenic	Intergenic	-295249	NM_027009	69263	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	4.922	1.450	0.597	5.434	4.609	2.328	4.241	3.355	5.211	6.228	2.677	2.353	4.531	7.459	4.616	nan	4.263	7.141	4.091	3.205	2.268	4.500	4.070	3.555	5.143
2	chr1	6271818	6273180	+	0	NA	intron (NM_009826, intron 22 of 23)	intron (NM_009826, intron 22 of 23)	57837	NM_009826	12421	Mm.293811	NM_009826	ENSMUSG00000025907	Rb1cc1	2900055E04Rik|5930404L04Rik|Cc1|FIP200|LaXp180	RB1-inducible coiled-coil 1	protein-coding	5.277	1.284	0.479	3.456	2.786	1.488	0.936	1.939	3.391	5.474	1.423	0.805	4.058	4.566	2.743	4.496	5.649	3.022	0.961	1.054	0.679	0.832	2.002	1.522	3.327
4229	chr13	64432784	64435356	+	0	NA	intron (NM_053180, intron 2 of 7)	intron (NM_053180, intron 2 of 7)	1517	NM_053180	105278	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	0.794	0.778	0.034	0.869	0.752	0.324	1.826	1.272	0.912	0.560	6.561	2.116	1.804	2.935	1.781	nan	0.305	1.800	0.677	0.367	0.433	0.374	0.203	0.212	0.653
6319	chr17	7165206	7166198	+	0	NA	Intergenic	Intergenic	-4413	NM_011299	20112	Mm.268383	NM_011299	ENSMUSG00000023809	Rps6ka2	90kDa|D17Wsu134e|Rps6ka-rs1|Rsk3|p90rsk|pp90rsk	ribosomal protein S6 kinase, polypeptide 2	protein-coding	1.937	2.845	1.023	1.761	0.882	0.878	3.415	1.712	1.013	4.020	2.236	1.046	2.801	3.761	1.913	nan	nan	2.064	nan	0.410	0.590	1.353	0.765	2.163	3.962
2125	chr11	46553355	46555646	+	0	NA	intron (NM_001163353, intron 3 of 3)	Lx8b|LINE|L1	6087	NM_001163353	675689	Mm.478806	NM_001163353		Gm12171	OTTMUSG00000005499	predicted gene 12171	protein-coding	0.366	11.110	7.212	0.255	0.124		0.350	nan	0.295	0.222	0.071	0.093	0.188	0.221	0.148	nan	0.405	nan	nan	0.866	0.263	nan	nan	0.742	0.248
14778	chr8	127295934	127297725	+	0	NA	intron (NM_001309391, intron 3 of 24)	intron (NM_001309391, intron 3 of 24)	-2783	NM_001013581	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	1.324	nan	0.959	nan	0.436	0.070	nan	2.872	0.617	0.659	6.802	2.791	0.735	0.402	nan	0.982	1.167	nan	5.733	5.776	4.992	9.833	4.397	4.056	1.693
11005	chr5	3354494	3357624	+	0	NA	intron (NM_009873, intron 2 of 7)	intron (NM_009873, intron 2 of 7)	12166	NM_009873	12571	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	1.986	9.012	4.046	1.677	0.668	0.393	0.812	0.711	1.243	1.238	0.983	0.878	0.617	0.885	1.057	1.279	0.779	1.243	0.906	0.702	0.293	1.333	0.539	0.061	0.843
1231	chr10	40460207	40462737	+	0	NA	intron (NM_198164, intron 5 of 11)	intron (NM_198164, intron 5 of 11)	-108890	NM_027572	70840	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	0.461	0.505	0.327	0.455	0.310	0.248	0.426	0.514	0.365	0.507	0.265	0.126	0.220	0.712	0.168	0.616	0.538	0.411	3.557	4.133	2.875	2.168	10.593	9.073	0.496
12399	chr6	87024805	87026958	+	0	NA	intron (NM_001170591, intron 7 of 7)	ID_B1|SINE|B4	16045	NM_020045	56748	Mm.23809	NM_020045	ENSMUSG00000029993	Nfu1	0610006G17Rik|CGI-33|Hirip5	NFU1 iron-sulfur cluster scaffold	protein-coding	2.946	3.285	2.158	3.214	3.367	3.868	4.320	3.613	3.342	3.904	1.338	2.087	4.688	6.529	3.702	4.752	3.973	nan	nan	1.152	0.626	0.645	0.884	0.662	2.629
11628	chr5	117642280	117649082	+	0	NA	intron (NM_001312914, intron 5 of 19)	B3|SINE|B2	-221158	NM_008712	18125	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	3.713	0.831	0.531	2.213	2.439	1.536	4.762	2.349	2.929	4.016	0.886	0.769	5.936	6.348	4.715	4.517	3.490	4.573	nan	nan	0.405	0.548	nan	0.391	3.798
9450	chr3	88418643	88436255	+	0	NA	Intergenic	B3A|SINE|B2	-2308	NM_001145876	229517	Mm.301740	NM_178696	ENSMUSG00000050144	Slc25a44	6720482A19|B430110G05Rik	solute carrier family 25, member 44	protein-coding	6.904	5.603	2.033	7.673	5.849	3.396	8.406	5.454	4.367	6.532	4.170	2.467	4.878	7.943	6.196	nan	4.788	7.006	nan	4.487	3.223	5.527	3.826	3.176	9.518
973	chr1	184165748	184168920	+	0	NA	Intergenic	Intergenic	132873	NM_022019	63953	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	3.172	0.618	0.221	1.212	2.618	0.741	2.433	1.805	2.084	2.575	1.506	0.840	3.693	5.140	2.639	nan	2.743	2.666	0.926	1.050	0.744	2.303	0.407	0.210	2.761
2446	chr11	74367380	74371619	+	0	NA	Intergenic	B3A|SINE|B2	4828	NM_001011851	258153	Mm.376124	NM_001011851	ENSMUSG00000058275	Olfr412	MOR127-5P	olfactory receptor 412	protein-coding	1.617	1.788	0.636	1.744	1.026	1.050	1.624	3.897	1.711	1.252	3.150	1.812	1.422	nan	nan	nan	0.616	nan	4.115	2.744	nan	4.594	4.103	3.746	1.659
7904	chr19	57432332	57437905	+	0	NA	Intergenic	Intergenic	-17788	NM_029839	72133	Mm.258404	NM_028115	ENSMUSG00000025086	Trub1	2610009I02Rik|9030425C13Rik|AI448235|BB118943|C76870	TruB pseudouridine (psi) synthase family member 1	protein-coding	6.032	nan	2.822	9.145	4.174	2.896	6.056	7.368	4.155	7.835	3.745	2.825	4.982	6.988	nan	6.148	5.965	6.258	2.100	1.889	1.993	4.441	2.090	2.383	9.232
14977	chr9	41758383	41759710	+	0	NA	Intergenic	Intergenic	177120	NR_029822	387236		NR_029822	ENSMUSG00000093354	Mir125b-1	Mirn125b|Mirn125b-1|mir-125b-1	microRNA 125b-1	ncRNA	2.806	7.675	2.525	4.401	1.374	0.273	2.105	2.885	2.735	2.689	1.700	1.495	3.287	4.558	5.564	4.582	1.672	3.654	2.548	2.060	0.648	4.644	1.038	1.170	5.104
13291	chr7	75096042	75100619	+	0	NA	Intergenic	Intergenic	68119	NR_131122	75205	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	-	RIKEN cDNA 4930533N22 gene	ncRNA	4.069	3.000	0.640	nan	1.759	1.485	3.361	4.636	2.023	6.459	8.023	4.793	5.146	3.405	4.139	nan	4.063	3.677	2.355	1.143	1.955	4.873	2.338	4.083	nan
11710	chr5	124565079	124567252	+	0	NA	intron (NM_026409, intron 10 of 13)	intron (NM_026409, intron 10 of 13)	12966	NM_145371	209354	Mm.28839	NM_145371	ENSMUSG00000029388	Eif2b1	D5Ertd406e|EIF2BA	eukaryotic translation initiation factor 2B, subunit 1 (alpha)	protein-coding	6.168	5.854	1.226	5.342	3.084	1.976	8.108	4.470	2.785	5.315	3.022	2.417	3.903	7.229	nan	5.874	3.826	5.305	nan	2.015	2.035	5.279	nan	3.265	nan
10811	chr4	140702483	140705299	+	0	NA	intron (NM_173867, intron 2 of 12)	RMER10A|LTR|ERVL	2418	NM_173867	108911	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	6.203	8.387	2.070	8.502	4.281	2.871	5.966	6.163	5.520	8.098	4.020	3.116	5.670	8.145	8.366	8.808	4.463	8.374	5.917	2.193	2.227	7.363	nan	3.253	11.062
1046	chr1	194653651	194658196	+	0	NA	intron (NM_008882, intron 3 of 31)	RLTR10-int|LTR|ERVK	36094	NM_008882	18845	Mm.2251	NM_008882	ENSMUSG00000026640	Plxna2	2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463	plexin A2	protein-coding	5.482	0.729	0.365	0.495	0.272	0.329	5.673	4.787	2.226	1.795	5.125	1.781	4.742	3.372	5.190	9.722	6.827	4.108	0.814	0.248	0.782	0.522	nan	0.461	7.393
5644	chr15	99466732	99470838	+	0	NA	Intergenic	Intergenic	5945	NM_029236	75284	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	2.442	1.493	0.764	0.863	0.513	0.361	1.011	1.266	1.204	1.145	0.524	0.605	2.655	1.547	1.591	nan	2.680	1.367	6.242	1.780	1.918	2.973	3.804	3.457	2.603
7028	chr18	12134375	12137983	+	0	NA	intron (NM_024182, intron 2 of 12)	intron (NM_024182, intron 2 of 12)	7329	NM_024182	66878	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	3.867	2.787	0.824	7.069	1.003	0.654	0.848	1.308	2.216	2.290	5.369	1.083	nan	1.991	1.673	2.471	1.063	3.907	0.585	0.562	0.348	0.797	0.578	0.334	3.064
13261	chr7	72934964	72936237	+	0	NA	Intergenic	L1MEg|LINE|L1	166468	NR_046024	625243	Mm.261798	NR_046024	ENSMUSG00000108383	Gm6567	-	predicted gene 6567	ncRNA	3.547	0.566	1.210	2.230	2.752	0.358	6.960	6.146	3.858	4.170	9.744	6.400	3.877	4.434	4.726	6.220	4.107	3.428	1.910	2.056	1.259	2.199	3.436	2.020	3.004
5864	chr16	19946275	19948026	+	0	NA	exon (NM_183390, exon 7 of 7)	exon (NM_183390, exon 7 of 7)	35899	NM_183390	239743	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	4.664	2.130	0.646	2.571	1.122	0.532	3.976	2.964	2.288	2.523	2.547	0.982	4.663	4.202	4.050	7.129	2.351	6.137	0.575	0.153	0.451	0.444	0.138	0.175	6.561
14146	chr8	35754769	35756482	+	0	NA	Intergenic	Intergenic	70934	NM_027998	71908	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	4.035	1.242	0.587	1.797	1.061	0.889	4.933	10.542	3.589	3.964	1.658	0.961	4.591	5.499	7.089	10.336	6.384	5.205	1.176	1.165	1.216	3.435	0.781	0.784	6.343
10986	chr4	154573865	154575378	+	0	NA	intron (NM_001177995, intron 1 of 15)	intron (NM_001177995, intron 1 of 15)	61746	NR_045643	320939	Mm.436738	NR_045643		5930403L14Rik	-	RIKEN cDNA 5930403L14 gene	ncRNA	5.993	3.935	1.411	4.495	5.693	3.055	3.156	4.343	3.182	3.348	3.356	2.399	2.317	4.023	3.211	4.122	3.265	4.411	2.941	4.611	1.470	5.017	2.034	1.488	3.275
12729	chr6	127939967	127942716	+	0	NA	intron (NM_026743, intron 5 of 7)	(CA)n|Simple_repeat|Simple_repeat	53719	NM_026743	68498	Mm.174368	NM_026743	ENSMUSG00000030351	Tspan11	1110014F12Rik|AU067806	tetraspanin 11	protein-coding	2.937	3.575	0.719	3.487	3.001	1.443	2.882	3.254	2.430	2.023	1.211	1.009	2.824	4.588	4.142	5.190	2.526	4.903	0.865	0.848	0.401	1.557	0.847	0.383	4.843
4021	chr13	41517941	41520974	+	0	NA	Intergenic	Intergenic	-32097	NM_001111324	18003	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	3.649	nan	1.727	2.690	4.007	2.292	4.118	4.704	4.653	3.996	1.552	2.907	3.826	5.698	3.989	nan	1.954	nan	5.217	6.075	4.287	5.111	8.445	6.901	3.221
13838	chr7	140973153	140975481	+	0	NA	Intergenic	Intergenic	6241	NM_001112715	68713	Mm.175661	NM_026820	ENSMUSG00000025491	Ifitm1	1110036C17Rik|DSPA2a|Mil-2|Mil2	interferon induced transmembrane protein 1	protein-coding	6.331	nan	0.274	3.383	5.991	3.059	7.590	12.343	4.418	5.860	8.130	4.233	7.748	9.833	8.140	6.907	6.939	7.155	1.147	1.384	0.966	0.887	1.045	0.496	7.560
2857	chr11	103257049	103263881	+	0	NA	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	6936	NM_016896	53859	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	3.491	1.606	1.109	nan	3.867	3.383	4.269	4.294	nan	2.464	1.929	1.912	4.240	5.066	3.710	4.258	3.011	3.570	1.043	0.976	1.378	nan	0.607	0.868	2.037
3048	chr11	117810860	117816619	+	0	NA	3' UTR (NM_009304, exon 4 of 4)	3' UTR (NM_009304, exon 4 of 4)	4072	NM_009304	20973	Mm.468228	NM_009304	ENSMUSG00000048277	Syngr2	Clast2|cellugyrin	synaptogyrin 2	protein-coding	4.266	6.160	1.752	5.195	3.980	3.243	2.441	3.165	3.797	4.234	2.538	1.989	2.189	3.223	3.296	3.333	1.872	4.283	5.853	nan	4.102	6.632	5.205	4.610	3.207
9657	chr3	105556999	105562319	+	0	NA	intron (NM_001039347, intron 2 of 6)	intron (NM_001039347, intron 2 of 6)	100843	NM_019931	56543	Mm.44530	NM_019931	ENSMUSG00000040896	Kcnd3	AW045978|Kncd3|Kv4.3	potassium voltage-gated channel, Shal-related family, member 3	protein-coding	6.201	2.644	2.015	3.744	5.755	3.691	5.848	5.391	4.648	4.740	1.442	1.067	7.139	7.733	4.008	4.308	6.063	5.479	1.100	1.279	1.337	1.098	0.731	0.854	4.023
7065	chr18	22833839	22835779	+	0	NA	intron (NM_001347510, intron 5 of 9)	MTD|LTR|ERVL-MaLR	203854	NM_001161483	319211	Mm.209896	NM_199024	ENSMUSG00000041923	Nol4	1700013J13Rik|4930568N03Rik|Gm1262	nucleolar protein 4	protein-coding	nan	0.549	0.292	0.264	0.216	0.127	0.217	0.250	0.270	0.178	0.267	0.194	0.086	0.213	0.114	0.354	0.208	0.284	1.644	5.546	4.718	3.200	3.818	2.643	0.366
12919	chr7	7250629	7252989	+	0	NA	intron (NR_003555, intron 4 of 6)	Lx2|LINE|L1	-4481	NM_001113468	76229	Mm.387947	NM_001113468	ENSMUSG00000095730	Vmn2r29	6430701C03Rik	vomeronasal 2, receptor 29	protein-coding	9.033	11.506	4.498	10.115	7.737	3.998	7.823	10.593	4.611	10.470	6.753	3.139	6.783	10.473	7.965	9.442	8.821	7.361	4.912	4.838	5.668	5.553	5.639	5.726	14.727
12782	chr6	134738164	134746784	+	0	NA	intron (NM_001048054, intron 3 of 6)	intron (NM_001048054, intron 3 of 6)	50154	NM_130447	70686	Mm.491182	NM_130447	ENSMUSG00000030203	Dusp16	3830417M17Rik|AW558566|D6Ertd213e|MKP-7|MKP7|Mkpm	dual specificity phosphatase 16	protein-coding	6.294	3.251	1.452	6.268	5.514	3.672	6.150	10.046	6.135	9.382	5.821	3.161	7.613	9.040	8.049	7.943	8.195	7.900	nan	3.570	2.888	5.582	5.375	5.305	nan
6394	chr17	24563031	24565355	+	0	NA	exon (NM_013630, exon 2 of 46)	exon (NM_013630, exon 2 of 46)	14243	NM_013630	18763	Mm.30435	NM_013630	ENSMUSG00000032855	Pkd1	PC1|mFLJ00285	polycystic kidney disease 1 homolog	protein-coding	6.658	7.162	3.340	6.940	5.227	5.093	9.348	5.802	4.924	8.679	4.601	3.590	6.590	8.821	6.479	nan	6.488	4.937	4.847	4.149	6.218	4.290	4.479	6.132	9.121
7104	chr18	33472924	33476117	+	0	NA	non-coding (NR_045415, exon 3 of 3)	non-coding (NR_045415, exon 3 of 3)	10357	NR_045415	433171	Mm.353332	NR_045415		Gm10549	ENSMUSG00000073610	predicted gene 10549	ncRNA	6.275	0.636	0.344	2.120	1.656	0.655	4.221	3.599	2.936	2.815	0.286	0.520	5.589	5.002	4.942	nan	6.041	4.616	0.613	0.724	0.230	0.468	0.796	0.267	7.591
8136	chr2	32347252	32351685	+	0	NA	intron (NM_001301737, intron 1 of 21)	intron (NM_001301737, intron 1 of 21)	3861	NM_001301737	13429	Mm.44736	NM_010065	ENSMUSG00000026825	Dnm1	AI838169|Dnm|Ftfl|mKIAA4093	dynamin 1	protein-coding	3.159	6.523	2.352	2.493	1.998	1.280	3.421	5.375	nan	2.577	7.464	5.542	3.245	2.434	1.835	2.323	1.466	2.788	0.965	1.790	1.736	0.575	0.908	0.806	2.388
11720	chr5	124890941	124905277	+	0	NA	Intergenic	Intergenic	35404	NM_001081750	269704	Mm.138617	NM_001081750	ENSMUSG00000079215	Zfp664	AW060232|D930038J03Rik|ZFOC1|Znf664	zinc finger protein 664	protein-coding	4.447	2.858	1.232	3.897	3.820	2.821	5.073	5.671	2.713	nan	3.270	2.597	4.248	6.498	nan	4.561	nan	nan	nan	2.136	2.443	4.687	nan	2.498	nan
7801	chr19	44489978	44492531	+	0	NA	Intergenic	Intergenic	-2218	NM_011720	22423	Mm.88365	NM_011720	ENSMUSG00000036961	Wnt8b	-	wingless-type MMTV integration site family, member 8B	protein-coding	1.551	1.973	0.580	2.381	5.344	3.261	2.364	2.508	2.396	3.916	0.701	0.714	2.000	4.122	2.218	3.072	1.706	3.080	0.760	0.982	0.730	2.072	1.746	1.320	3.187
7987	chr2	17984319	17987922	+	0	NA	Intergenic	B3|SINE|B2	10838	NM_026627	68231	Mm.23887	NM_026627	ENSMUSG00000062651	H2afb1	1700113O17Rik|H2A.Bbd|H2al2|TSEG-1|Tseg1	H2A histone family, member B1	protein-coding	9.985	11.231	3.502	10.483	6.794	5.125	10.003	11.813	6.086	13.824	7.996	4.261	10.093	11.709	8.985	11.512	10.313	10.135	6.732	2.798	3.695	6.466	3.968	6.152	14.625
13745	chr7	133764336	133782084	+	0	NA	intron (NM_001286031, intron 1 of 11)	intron (NM_001286031, intron 1 of 11)	3593	NM_001286032	101437	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	4.697	nan	0.936	3.921	3.884	2.985	3.016	6.639	nan	3.939	4.586	4.164	4.114	5.342	4.556	4.340	4.472	4.098	6.252	4.774	3.601	6.478	6.718	5.440	4.513
8547	chr2	117981768	117982978	+	0	NA	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	128829	NR_126479	329496	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24|OTTMUSG00000015236	predicted gene 13986	ncRNA	6.887	0.847	1.288	1.442	1.085	0.494	4.790	5.016	2.127	1.569	0.441	0.337	3.933	3.247	1.911	4.239	5.302	4.019	0.632	0.417	0.501	0.457	0.521	0.253	3.959
344	chr1	78643278	78646557	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	-12908	NM_001033606	74205	Mm.276016	NM_028817	ENSMUSG00000032883	Acsl3	2610510B12Rik|Acs3|C85929|Facl3|Pro2194	acyl-CoA synthetase long-chain family member 3	protein-coding	5.342	0.413	0.505	0.886	0.871	0.904	2.986	3.343	1.974	1.288	2.414	2.294	3.868	2.202	2.726	4.100	3.285	2.313	nan	nan	2.134	5.493	nan	2.363	1.938
4682	chr14	55609940	55616861	+	0	NA	Intergenic	Intergenic	-4766	NM_020002	56739	Mm.23149	NM_020002	ENSMUSG00000002324	Rec8	Rec8L1|mrec	REC8 meiotic recombination protein	protein-coding	2.247	nan	0.341	2.742	1.811	0.727	3.455	nan	2.625	4.013	0.291	0.778	4.351	7.689	5.440	7.517	3.442	4.543	0.940	0.829	0.434	0.776	1.011	0.672	8.964
7445	chr18	84549203	84550355	+	0	NA	intron (NM_001033341, intron 3 of 8)	B3|SINE|B2	39725	NM_001033341	240476	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	5.484	1.038	1.105	2.709	1.780	1.652	2.992	3.084	2.627	3.545	0.662	0.561	3.928	5.326	4.262	4.819	4.680	4.655	0.903	0.480	0.532	0.499	0.473	0.177	7.033
12172	chr6	38703473	38704597	+	0	NA	intron (NM_001294144, intron 12 of 14)	intron (NM_001294144, intron 12 of 14)	40966	NM_001101507	665180	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	3.358	1.252	0.565	3.309	1.142	0.352	2.717	4.950	2.986	2.506	0.831	0.414	4.832	4.951	4.015	6.099	2.782	7.224	nan	0.485	0.109	nan	nan	0.330	2.869
15679	chrX	12337215	12340233	+	0	NA	Intergenic	ORR1A2|LTR|ERVL-MaLR	16272	NR_045321	100043946	Mm.211985	NR_045321	ENSMUSG00000087591	Gm14635	OTTMUSG00000017536	predicted gene 14635	ncRNA	5.420	8.259	2.855	6.470	2.779	2.106	3.368	4.332	4.471	7.566	5.203	2.995	4.280	6.058	4.943	6.198	4.529	5.915	5.205	3.043	1.825	5.160	3.413	3.069	6.776
6577	chr17	35047744	35048951	+	0	NA	Intergenic	Intergenic	-1602	NM_001146215	17687	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5	protein-coding	2.948	6.968	2.832	0.504	0.296	0.104	4.038	3.980	0.698	0.926	0.631	0.163	2.475	2.857	3.259	3.729	2.143	1.832	0.383	0.168	0.521	0.629	0.249	0.318	4.722
7129	chr18	35519649	35524256	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-23027	NM_030749	81500	Mm.291482	NM_030749	ENSMUSG00000024357	Sil1	1810057E01Rik|AI042831|wz	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	protein-coding	4.740	0.713	0.308	1.885	1.711	1.051	2.955	4.788	3.004	3.316	1.122	1.946	5.495	5.949	2.118	2.771	3.989	3.206	2.703	1.935	0.806	1.879	2.280	1.491	3.360
13900	chr7	149020737	149026069	+	0	NA	Intergenic	Intergenic	3708568	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	4.867	nan	0.215	nan	0.606	0.255	7.157	12.710	nan	2.288	1.646	1.377	10.131	7.792	6.576	4.860	3.168	3.087	3.748	1.693	1.284	4.515	nan	1.497	9.269
11460	chr5	96588947	96594901	+	0	NA	intron (NM_175473, intron 15 of 73)	L1ME5|LINE|L1	-201461	NM_013470	11745	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	9.966	14.939	7.075	8.516	6.242	4.323	8.269	7.006	6.012	12.816	6.779	4.599	6.371	9.065	7.959	8.354	6.284	7.781	8.839	6.488	5.949	8.450	8.219	8.641	10.013
2103	chr11	44425530	44427167	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	26285	NM_001303244	16160	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	1.361	19.441	6.649	1.979	0.245	0.130	0.321	nan	0.608	1.181	0.365	0.254	0.353	0.583	0.701	nan	0.534	0.965	nan	0.634	0.343	nan	nan	0.183	1.010
15786	chrX	99314239	99315839	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	128758	NR_033544	100038584	Mm.368385	NR_033544	ENSMUSG00000073051	Gm14812	ENSMUSG00000073051|OTTMUSG00000018066	predicted gene 14812	ncRNA	4.725	2.924	1.621	2.089	4.349	2.209	4.417	3.987	2.335	2.679	2.890	1.559	2.721	4.312	1.846	2.277	2.624	1.905	2.659	2.605	1.598	1.519	2.471	1.799	2.590
12740	chr6	128533675	128539805	+	0	NA	Intergenic	Intergenic	-10020	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	4.701	nan	0.501	1.357	1.279	0.724	3.364	8.014	2.121	2.941	2.889	2.102	4.404	6.614	6.202	7.934	8.405	2.553	2.052	2.036	0.835	5.051	1.754	1.082	3.161
12203	chr6	47787518	47791263	+	0	NA	Intergenic	Intergenic	14262	NR_030485	735289		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	5.249	1.613	1.185	3.014	2.752	2.139	5.072	7.228	2.925	3.137	1.265	0.923	5.370	5.263	6.197	8.308	7.730	5.089	nan	0.885	0.650	0.931	0.719	0.558	7.123
8396	chr2	79474729	79479720	+	0	NA	Intergenic	Intergenic	-20588	NM_010894	18012	Mm.4636	NM_010894	ENSMUSG00000034701	Neurod1	BETA2|BHF-1|Nd1|Neurod|bHLHa3	neurogenic differentiation 1	protein-coding	4.767	4.629	1.533	nan	1.648	1.382	3.721	5.606	4.224	6.004	5.054	5.127	4.256	4.241	nan	nan	4.003	4.882	2.324	1.126	0.992	1.933	1.283	1.914	nan
2949	chr11	111304194	111307030	+	0	NA	Intergenic	Intergenic	239448	NM_008425	16518	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	3.336	0.569	0.456	4.019	4.638	2.332	0.664	1.537	5.819	7.081	0.925	0.961	3.256	4.880	2.977	4.797	2.893	5.463	0.502	0.997	0.763	nan	0.573	0.270	1.862
15594	chr9	120662091	120663353	+	0	NA	Intergenic	B2_Mm1a|SINE|B2	85391	NR_073359	76100	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	2.413	0.762	0.988	2.235	1.383	1.152	2.076	1.822	1.647	1.271	1.400	1.670	1.739	2.812	1.511	1.944	1.471	1.617	0.852	1.183	0.800	0.662	nan	0.925	1.435
6624	chr17	43270744	43276719	+	0	NA	intron (NM_133776, intron 1 of 15)	B4|SINE|B4	3384	NM_133776	77596	Mm.159950	NM_133776	ENSMUSG00000041293	Adgrf1	5031409J19Rik|Gpr110|KPG_009	adhesion G protein-coupled receptor F1	protein-coding	4.053	0.814	0.507	1.739	2.791	1.545	6.527	5.213	2.741	2.851	3.298	3.360	4.539	6.587	3.734	3.307	nan	3.033	1.656	1.255	1.056	1.697	2.186	1.492	2.500
2224	chr11	54949734	54951266	+	0	NA	intron (NM_021327, intron 1 of 17)	RSINE1|SINE|B4	12440	NM_021327	57783	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	1.777	10.584	6.260	1.495	1.017	0.325	0.614	0.516	1.282	0.872	1.065	0.624	0.346	nan	1.051	0.778	0.912	0.915	nan	0.813	0.916	0.405	0.442	0.927	nan
209	chr1	58708101	58710798	+	0	NA	Intergenic	Intergenic	-2042	NM_001289704	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	8.001	8.969	2.721	7.712	2.579	1.029	5.347	4.974	4.433	6.363	8.457	3.223	7.725	6.099	6.412	8.287	5.206	6.981	1.458	1.216	1.365	2.520	0.910	0.864	7.784
10581	chr4	129833249	129842867	+	0	NA	intron (NM_001164745, intron 1 of 5)	(TATG)n|Simple_repeat|Simple_repeat	17350	NM_001164745	19244	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	1.857	0.949	0.568	2.330	2.206	1.521	3.000	5.467	1.705	1.892	0.886	1.376	1.493	3.001	nan	2.482	0.999	2.463	0.866	1.005	0.905	0.815	0.864	0.587	1.638
7442	chr18	83985964	83993444	+	0	NA	Intergenic	Intergenic	96858	NM_001081300	110796	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	7.556	0.512	0.310	2.370	4.844	2.158	2.068	3.321	5.947	7.049	1.518	1.128	3.596	4.009	2.439	2.457	2.608	6.152	0.773	0.442	0.370	0.664	0.499	0.489	4.563
15573	chr9	118783565	118788126	+	0	NA	intron (NM_001113514, intron 3 of 13)	intron (NM_001113514, intron 3 of 13)	74153	NM_001113514	104099	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	2.861	1.162	0.452	3.041	2.418	1.484	3.237	1.418	2.670	4.250	0.740	0.704	4.436	5.992	4.301	6.236	3.253	5.560	1.017	0.770	0.676	1.379	nan	0.819	9.061
11205	chr5	42234193	42237188	+	0	NA	Intergenic	Intergenic	167730	NR_131130	433882	Mm.319353	NR_131130	ENSMUSG00000067285	Gm16223	EG433882|OTTMUSG00000031875	predicted gene 16223	ncRNA	7.432	8.220	4.705	7.596	6.374	5.653	7.894	5.701	5.768	7.797	3.909	4.336	5.224	7.801	nan	6.877	6.595	6.537	4.390	4.443	5.234	4.309	5.284	6.738	6.975
5916	chr16	23255754	23261236	+	0	NA	intron (NM_001252505, intron 2 of 7)	ID4|SINE|ID	-31975	NM_001252506	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	4.363	1.891	1.349	1.788	2.177	1.148	7.690	2.495	3.040	5.027	1.125	0.750	nan	6.409	3.548	6.554	4.465	2.336	0.881	0.834	0.837	0.898	nan	0.856	8.801
13495	chr7	107124009	107126519	+	0	NA	Intergenic	L1Md_F2|LINE|L1	4218	NM_146780	258776	Mm.223207	NM_146780	ENSMUSG00000060503	Olfr715	MOR260-1	olfactory receptor 715	protein-coding	5.271	1.010	0.900	3.556	2.895	1.931	3.875	3.682	4.063	3.849	3.250	2.643	4.755	5.647	3.495	3.674	5.717	nan	1.964	1.019	0.781	0.505	1.342	0.840	3.362
4460	chr14	9004730	9008147	+	0	NA	Intergenic	L1M2|LINE|L1	340048	NR_045968	74859	Mm.84041	NR_045968	ENSMUSG00000097898	4930455B14Rik	1700027C12Rik	RIKEN cDNA 4930455B14 gene	ncRNA	5.225	3.700	1.476	4.261	3.865	3.139	4.008	9.051	3.490	3.993	3.037	1.583	4.144	6.126	4.575	6.281	3.436	4.587	1.927	1.173	1.253	2.205	1.561	1.074	6.012
5080	chr15	27559384	27561046	+	0	NA	intron (NM_020332, intron 4 of 11)	intron (NM_020332, intron 4 of 11)	-11279	NR_106065	102466808		NR_106065	ENSMUSG00000098416	Mir7117	Gm27729|mmu-mir-7117	microRNA 7117	ncRNA	7.395	13.214	3.937	7.499	3.302	2.046	7.094	9.818	2.968	8.885	3.530	2.830	5.641	5.847	6.675	7.261	5.459	6.781	3.101	2.261	2.095	4.432	2.773	3.052	9.978
15320	chr9	75723563	75725009	+	0	NA	Intergenic	L1Md_T|LINE|L1	-40230	NM_009130	20255	Mm.2386	NM_009130	ENSMUSG00000032181	Scg3	1B1075|AI385542|Chgd|SgIII	secretogranin III	protein-coding	3.102	0.263	0.784	2.267	2.288	1.724	2.245	2.392	3.173	3.246	0.755	1.164	5.363	4.455	1.897	3.229	3.306	3.363	0.963	nan	0.923	0.311	0.915	0.718	2.479
12000	chr5	151847602	151850958	+	0	NA	Intergenic	Intergenic	-198072	NM_027009	69263	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	3.208	0.957	0.302	3.451	1.864	0.873	1.574	1.161	2.101	2.915	0.745	0.477	2.807	2.844	2.797	3.790	1.990	4.287	0.774	0.626	0.199	1.045	0.489	0.295	4.110
5683	chr15	100605145	100611011	+	0	NA	Intergenic	(TTTA)n|Simple_repeat|Simple_repeat	7032	NR_045701	78445	Mm.44383	NR_045701	ENSMUSG00000097093	C330013E15Rik	-	RIKEN cDNA C330013E15 gene	ncRNA	1.259	10.415	3.623	0.833	0.617	0.313	1.716	2.040	0.996	1.601	0.562	0.466	1.632	1.001	1.479	nan	0.863	1.430	0.875	0.409	0.606	0.741	0.811	0.639	1.342
14569	chr8	109110474	109113866	+	0	NA	intron (NR_126329, intron 2 of 9)	intron (NR_126329, intron 2 of 9)	36948	NR_126329	628686	Mm.203332	NR_126329	ENSMUSG00000097393	D030068K23Rik	-	RIKEN cDNA D030068K23 gene	ncRNA	4.075	0.632	0.957	2.476	5.109	3.833	3.604	5.870	4.293	3.008	3.169	4.192	4.579	5.386	3.656	4.195	3.327	4.103	2.648	3.452	3.770	nan	4.477	4.120	3.158
14391	chr8	85559160	85563238	+	0	NA	Intergenic	RLTR42-int|LTR|ERVK	-5928	NM_019794	56445	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	0.780	0.896	0.257	0.886	0.342	0.089	0.281	0.773	nan	0.683	0.627	0.443	0.548	0.603	0.684	0.813	0.503	0.912	3.044	2.115	1.303	6.749	0.890	0.514	0.857
14300	chr8	73050975	73053847	+	0	NA	intron (NM_001317391, intron 6 of 15)	B4|SINE|B4	35899	NR_039551	100628574		NR_039551	ENSMUSG00000093140	Mir28b	mmu-mir-28b	microRNA 28b	ncRNA	10.089	9.866	5.436	8.652	9.707	8.861	7.698	12.936	nan	8.405	7.059	5.651	8.652	10.906	8.350	9.163	9.972	8.153	4.680	4.313	6.577	6.694	3.821	5.100	12.243
6658	chr17	45899699	45905386	+	0	NA	Intergenic	G-rich|Low_complexity|Low_complexity	122621	NM_001110267	22339	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	3.675	1.352	0.550	3.606	3.484	2.196	9.812	6.161	5.060	6.350	4.401	4.917	5.827	8.054	6.871	8.475	nan	5.389	1.530	1.098	0.724	3.281	1.214	1.018	8.927
7821	chr19	46391587	46393159	+	0	NA	intron (NM_016860, intron 1 of 10)	B3A|SINE|B2	3362	NM_016860	54130	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding	0.795	1.272	0.523	nan	0.728	0.522	0.626	1.073	0.543	1.787	0.668	0.292	0.169	0.755	0.610	0.798	0.682	nan	1.743	1.623	1.916	2.568	3.714	4.253	1.278
12722	chr6	127607465	127611745	+	0	NA	intron (NM_001033464, intron 4 of 6)	intron (NM_001033464, intron 4 of 6)	31630	NM_001033464	381812	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	4.124	nan	0.613	1.426	1.574	0.581	2.687	nan	1.689	2.854	0.310	0.391	4.550	5.262	3.578	5.179	2.371	3.173	0.513	0.550	0.214	0.507	0.343	0.289	6.250
15206	chr9	65246289	65258915	+	0	NA	Intergenic	RSINE1|SINE|B4	-12578	NM_173385	214425	Mm.138455	NM_173385	ENSMUSG00000042254	Cilp	9830114D16|C130036G17Rik	cartilage intermediate layer protein, nucleotide pyrophosphohydrolase	protein-coding	2.916	1.565	0.644	5.092	2.750	1.741	1.329	2.504	4.180	6.007	2.447	1.548	4.975	7.146	nan	3.552	1.538	6.521	nan	0.931	0.851	1.159	0.371	0.354	3.412
4998	chr14	123300962	123305621	+	0	NA	intron (NM_177393, intron 28 of 43)	B1_Mur4|SINE|Alu	134105	NR_045144	380934	Mm.393838	NR_045143		AA536875	Gm1591	expressed sequence AA536875	ncRNA	5.835	nan	0.672	2.002	3.479	2.275	4.779	8.840	3.636	3.991	2.468	1.211	6.361	6.454	4.983	4.588	3.918	4.881	2.619	1.315	1.100	2.964	nan	1.840	6.050
10464	chr4	120278072	120292648	+	0	NA	intron (NM_194060, intron 1 of 1)	intron (NM_194060, intron 1 of 1)	1901	NM_194060	329934	Mm.277090	NM_194060	ENSMUSG00000052135	Foxo6	-	forkhead box O6	protein-coding	0.556	0.728	0.428	0.830	0.654	0.374	0.797	0.773	1.240	0.946	0.723	0.989	0.652	0.835	0.672	nan	0.394	0.742	9.151	7.160	6.086	9.049	7.119	6.374	1.055
14609	chr8	113668616	113670158	+	0	NA	intron (NR_136914, intron 2 of 2)	(TC)n|Simple_repeat|Simple_repeat	7071	NR_136914	102631810	Mm.412563	NR_136914	ENSMUSG00000110582	Gm30052	-	predicted gene, 30052	ncRNA	4.847	4.713	1.490	7.145	1.994	2.546	3.117	7.141	2.315	7.777	2.884	2.813	4.828	4.523	6.785	7.438	3.570	5.941	2.447	1.260	2.626	5.358	1.316	2.715	9.335
6449	chr17	27216898	27222756	+	0	NA	Intergenic	ID_B1|SINE|B4	-15389	NM_146075	224640	Mm.29689	NM_146075	ENSMUSG00000044857	Lemd2	BC026588|Lem2|NET25	LEM domain containing 2	protein-coding	3.837	1.143	0.579	2.260	3.402	1.655	8.235	4.329	2.990	3.908	2.875	1.565	5.254	6.834	5.009	nan	3.187	3.940	0.581	0.757	0.623	0.536	0.326	0.242	5.501
1873	chr10	128240517	128243502	+	0	NA	intron (NM_011589, intron 7 of 28)	B2_Mm2|SINE|B2	3943	NM_011589	21853	Mm.6458	NM_011589	ENSMUSG00000039994	Timeless	C77407|Debt69|tim	timeless circadian clock 1	protein-coding	10.199	9.858	2.276	9.309	4.124	1.837	6.864	7.228	5.807	7.387	6.840	3.309	6.306	8.986	9.189	10.851	7.103	8.377	5.187	3.165	2.419	6.285	nan	2.875	14.671
15865	chrX	162970215	162979876	+	0	NA	intron (NR_033143, intron 13 of 18)	intron (NR_033143, intron 13 of 18)	-10446	NM_009789	12309	Mm.6891	NM_009789	ENSMUSG00000040808	S100g	AU042539|CABP1|CaBP-D9K|Cabp9k|Calb3	S100 calcium binding protein G	protein-coding	2.093	0.758	0.483	1.281	1.829	1.423	4.124	2.342	2.526	2.401	0.406	0.582	4.162	4.416	3.759	4.714	2.137	3.481	0.690	0.488	0.343	0.540	0.386	0.196	2.094
10487	chr4	122754878	122760680	+	0	NA	Intergenic	L1Md_F|LINE|L1	68520	NM_023865	77432	Mm.491436	NM_023865	ENSMUSG00000023263	9530002B09Rik	Aump|Vpp1|Vppl	RIKEN cDNA 9530002B09 gene	protein-coding	0.646	0.700	0.462	0.772	0.517	0.464	0.606	0.804	0.610	0.692	1.258	0.964	0.410	0.581	0.852	nan	0.647	0.994	4.149	9.381	10.618	10.108	1.928	2.169	1.145
3651	chr12	103124826	103132287	+	0	NA	intron (NM_001081017, intron 32 of 48)	intron (NM_001081017, intron 32 of 48)	113590	NM_133364	170952	Mm.217019	NM_133364	ENSMUSG00000041669	Prima1	B230212M13Rik|BB120497|PRiMA	proline rich membrane anchor 1	protein-coding	8.744	0.646	0.614	nan	2.524	1.997	6.488	5.947	nan	nan	1.327	1.553	8.737	nan	5.086	6.820	7.634	5.190	1.249	0.973	0.641	0.667	1.939	1.139	nan
8555	chr2	118364756	118376352	+	0	NA	intron (NM_201367, intron 1 of 2)	intron (NM_201367, intron 1 of 2)	2865	NM_201367	381413	Mm.70979	NM_201367	ENSMUSG00000040133	Gpr176	Gm1012	G protein-coupled receptor 176	protein-coding	10.885	8.405	3.534	7.204	4.741	2.731	9.704	11.647	4.801	8.357	2.523	1.693	9.803	11.263	8.959	12.256	9.445	9.590	5.802	3.531	2.964	5.132	4.955	3.935	15.990
9928	chr4	10799762	10802719	+	0	NA	Intergenic	Intergenic	-3438	NR_045185	73624	Mm.67392	NR_045185	ENSMUSG00000086080	1700123O12Rik	-	RIKEN cDNA 1700123O12 gene	ncRNA	6.780	5.137	2.155	8.410	6.402	3.448	7.104	8.040	4.699	9.398	3.157	2.438	6.713	10.619	6.286	6.251	4.292	8.251	6.292	nan	2.471	5.520	4.747	4.902	9.230
4157	chr13	54705802	54713622	+	0	NA	intron (NM_001033364, intron 1 of 31)	intron (NM_001033364, intron 1 of 31)	8249	NM_001033364	268663	Mm.315382	NM_001033364	ENSMUSG00000034918	Cdhr2	Gm624|PC-LKC|Pcdh24	cadherin-related family member 2	protein-coding	nan	2.661	1.134	6.959	4.058	2.848	3.764	5.922	4.852	6.358	6.582	4.244	4.421	nan	5.115	nan	2.613	nan	3.299	1.419	1.455	3.411	1.821	1.858	nan
6711	chr17	48091187	48096025	+	0	NA	Intergenic	B3|SINE|B2	-3228	NR_110485	320638	Mm.404482	NR_110485		A730006G06Rik	-	RIKEN cDNA A730006G06 gene	ncRNA	5.964	0.909	0.662	3.714	3.407	1.944	10.772	6.648	4.066	4.663	1.945	2.729	7.297	7.266	8.492	9.902	8.147	6.176	5.144	2.220	2.688	3.352	4.586	5.014	10.261
6842	chr17	72171909	72179196	+	0	NA	intron (NM_007439, intron 4 of 28)	intron (NM_007439, intron 4 of 28)	393605	NM_030179	78785	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	1.023	0.598	0.385	0.511	0.707	0.388	0.861	0.420	nan	0.804	0.952	0.560	0.541	nan	0.687	0.824	0.918	0.763	4.034	4.254	2.606	3.896	3.774	2.623	0.840
13090	chr7	30740073	30741773	+	0	NA	intron (NM_001290631, intron 1 of 10)	intron (NM_001290631, intron 1 of 10)	-1516	NM_008085	14447	Mm.436562	NM_008085	ENSMUSG00000061099	Gapdhs	Gapd-s|Gapds	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	protein-coding	4.235	0.884	0.190	3.033	2.483	2.142	3.597	4.706	2.679	2.790	0.882	0.815	3.063	3.695	3.743	4.207	3.801	4.769	1.241	1.159	0.845	0.663	1.790	1.297	4.330
8062	chr2	28388464	28391180	+	0	NA	Intergenic	Intergenic	-58119	NM_001005420	241289	Mm.330095	NM_001005420	ENSMUSG00000035829	Ppp1r26	Gm347|Kiaa0649|mKIAA0649	protein phosphatase 1, regulatory subunit 26	protein-coding	6.754	16.271	5.033	7.533	1.906	0.770	2.871	5.590	nan	5.497	2.039	1.764	2.275	3.897	4.715	6.251	2.624	6.203	2.140	0.945	1.006	3.123	0.950	1.043	7.882
9332	chr3	58216075	58221488	+	0	NA	Intergenic	L1VL2|LINE|L1	-54974	NR_040538	67850	Mm.416968	NR_040538	ENSMUSG00000100666	1700007F19Rik	-	RIKEN cDNA 1700007F19 gene	ncRNA	6.619	9.452	2.725	9.680	4.571	3.925	8.001	7.077	4.877	10.040	4.462	3.389	7.009	7.836	nan	nan	6.001	nan	4.796	2.154	3.294	4.988	3.025	4.309	13.402
1212	chr10	38686767	38688847	+	0	NA	Intergenic	B3A|SINE|B2	133972	NM_001177783	215919	Mm.294313	NM_001177783	ENSMUSG00000094311	Rfpl4b	100040915|Gm3037|Gm62	ret finger protein-like 4B	protein-coding	2.482	1.640	0.979	3.205	1.698	1.352	1.179	0.626	1.479	1.676	0.390	0.734	0.614	0.998	0.871	1.177	1.248	1.625	1.020	1.322	1.465	1.045	0.941	0.712	1.106
4791	chr14	66812040	66819384	+	0	NA	intron (NM_009955, intron 8 of 13)	intron (NM_009955, intron 8 of 13)	52888	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.910	9.500	3.741	1.209	0.411	0.272	0.829	1.267	0.892	1.006	0.979	1.008	0.451	0.662	1.020	1.009	0.520	1.096	1.607	nan	0.589	1.383	0.864	0.422	0.806
2253	chr11	59318550	59320682	+	0	NA	intron (NM_139298, intron 1 of 3)	intron (NM_139298, intron 1 of 3)	12686	NM_139298	216795	Mm.218794	NM_139298	ENSMUSG00000000126	Wnt9a	Wnt14	wingless-type MMTV integration site family, member 9A	protein-coding	6.632	10.471	3.364	9.899	3.249	2.030	5.674	4.799	3.983	8.876	5.279	3.100	4.935	7.326	7.470	8.798	4.657	7.460	6.145	3.913	3.993	8.990	3.757	4.114	10.464
14625	chr8	115640314	115643436	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	65019	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.390	0.382	0.292	0.379	0.069	0.276	0.448	0.670	0.380	0.336	0.376	0.257	0.195	0.262	0.238	nan	0.548	0.560	5.847	8.969	6.481	8.683	2.249	1.235	0.353
2433	chr11	72773765	72780397	+	0	NA	TTS (NM_001024926)	TTS (NM_001024926)	18758	NM_001024926	192986	Mm.194755	NM_001024926	ENSMUSG00000057778	Cyb5d2	9330151E16Rik|Gm2	cytochrome b5 domain containing 2	protein-coding	2.103	8.768	2.804	4.076	0.962	0.447	2.003	3.258	2.370	3.154	1.070	0.652	2.582	nan	3.701	5.201	2.647	3.887	5.770	3.092	2.597	5.502	3.930	2.984	5.568
2787	chr11	100596594	100600576	+	0	NA	intron (NM_019795, intron 4 of 13)	intron (NM_019795, intron 4 of 13)	21583	NM_019795	56354	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	7.846	8.403	4.030	6.706	5.373	3.497	5.057	4.396	4.370	4.876	4.571	2.373	4.244	5.543	5.266	6.858	4.912	5.738	5.041	4.199	4.102	4.878	nan	nan	7.500
14216	chr8	47895655	47897763	+	0	NA	intron (NM_133791, intron 4 of 22)	intron (NM_133791, intron 4 of 22)	72227	NM_029383	75677	Mm.390033	NM_029383	ENSMUSG00000038064	Cldn22	2210404A22Rik|5330431C14Rik|9530051B05Rik	claudin 22	protein-coding	6.296	1.485	0.807	3.863	4.537	3.277	3.246	8.676	4.218	5.067	3.237	3.701	5.626	6.102	4.562	5.379	4.861	5.175	1.778	0.770	1.124	1.433	1.863	0.711	3.303
1477	chr10	79407194	79409714	+	0	NA	Intergenic	RLTR45-int|LTR|ERVK	51863	NM_001101572	624845	Mm.469866	NM_001101572	ENSMUSG00000091468	Vmn2r82	EG624845	vomeronasal 2, receptor 82	protein-coding	5.109	3.807	0.933	nan	1.298	0.727	2.341	4.372	1.331	1.813	1.410	0.703	3.042	3.168	4.042	3.795	3.339	5.343	nan	0.573	0.681	0.488	0.341	0.419	7.136
11507	chr5	104220262	104230184	+	0	NA	Intergenic	RLTR22_Mur|LTR|ERVK	22606	NM_016779	13406	Mm.199008	NM_016779	ENSMUSG00000029307	Dmp1	AV020965|Dmp|PP	dentin matrix protein 1	protein-coding	1.732	0.768	0.610	1.891	1.701	1.208	nan	1.754	2.178	1.809	1.006	1.206	0.649	1.025	1.133	1.847	1.268	2.344	nan	3.932	3.108	6.059	2.885	2.218	1.304
6954	chr17	87842920	87847158	+	0	NA	Intergenic	Intergenic	-47045	NM_199251	210741	Mm.312046	NM_199251	ENSMUSG00000050138	Kcnk12	mntk1	potassium channel, subfamily K, member 12	protein-coding	5.208	8.741	3.727	6.390	4.620	3.173	6.270	4.203	4.346	8.444	3.848	3.068	3.968	6.371	5.859	8.038	7.111	5.872	5.324	2.955	2.832	4.514	3.532	4.324	8.688
5777	chr16	10346967	10352540	+	0	NA	Intergenic	Intergenic	-18468	NR_126064	381033	Mm.263108	NR_126064		Gm1600	Gm1776	predicted gene 1600	ncRNA	7.897	0.872	0.398	5.198	4.348	2.426	7.360	9.747	5.533	7.464	4.593	2.561	8.475	11.469	8.316	11.603	4.634	10.475	1.548	1.102	0.996	2.940	1.026	0.913	11.272
6404	chr17	24905777	24907745	+	0	NA	intron (NM_013931, intron 12 of 31)	intron (NM_013931, intron 12 of 31)	10261	NM_019730	79059	Mm.430765	NM_019730	ENSMUSG00000073435	Nme3	1810009F08Rik|AI413736|DR-nm23|Ndk3|Nm23-DR|Nm23-M3	NME/NM23 nucleoside diphosphate kinase 3	protein-coding	0.672	1.391	1.532	0.591	0.593	0.759	1.189	0.845	0.677	0.234	0.231	0.255	0.441	1.042	0.710	0.717	0.641	0.718	4.631	4.248	5.493	5.335	4.619	6.145	0.586
505	chr1	120190211	120193911	+	0	NA	Intergenic	Intergenic	70874	NM_001172074	73103	Mm.271602	NM_028439	ENSMUSG00000026388	3110009E18Rik	-	RIKEN cDNA 3110009E18 gene	protein-coding	7.571	0.742	0.669	2.797	1.733	1.180	4.611	3.580	4.388	5.994	0.820	0.788	7.102	5.621	5.421	9.599	6.134	6.031	3.190	2.444	1.584	5.079	3.203	2.218	8.830
6310	chr17	6949322	6954328	+	0	NA	Intergenic	PB1D10|SINE|Alu	-3469	NM_001083945	100037282	Mm.29830	NM_001083945	ENSMUSG00000023806	Rsph3b	Rshl2b	radial spoke 3B homolog (Chlamydomonas)	protein-coding	5.127	1.937	0.870	6.039	3.702	1.455	2.821	3.362	3.881	4.510	3.997	1.699	3.859	6.082	4.994	nan	nan	5.507	nan	1.436	0.900	2.397	0.620	0.587	6.194
7610	chr19	17467299	17475945	+	0	NA	intron (NM_001190483, intron 27 of 37)	intron (NM_001190483, intron 27 of 37)	77579	NM_019437	54391	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding	6.099	2.053	0.751	3.943	2.752	1.515	6.374	7.031	3.475	4.612	1.673	2.131	5.592	4.448	5.578	6.026	6.890	7.180	0.996	0.929	0.709	1.689	1.034	0.997	8.168
8069	chr2	29510179	29535547	+	0	NA	intron (NM_026896, intron 7 of 7)	intron (NM_026896, intron 7 of 7)	-47569	NR_105753	102465170		NR_105753	ENSMUSG00000098539	Mir133c	Gm27865|mmu-mir-133c	microRNA 133c	ncRNA	2.376	12.198	5.511	2.576	1.553	1.071	1.491	1.982	nan	1.602	1.015	0.709	1.437	1.758	1.964	2.312	2.159	2.358	1.353	1.359	1.089	1.547	1.037	0.876	2.620
670	chr1	137042903	137044694	+	0	NA	Intergenic	ID_B1|SINE|B4	-83350	NM_030676	26424	Mm.16794	NM_030676	ENSMUSG00000026398	Nr5a2	AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B	nuclear receptor subfamily 5, group A, member 2	protein-coding	10.199	12.401	2.427	12.213	4.234	2.349	5.372	5.123	4.955	15.392	7.290	3.861	6.673	8.246	8.941	13.118	4.065	9.398	5.325	1.930	2.736	6.956	2.933	4.162	17.172
2739	chr11	98216713	98228262	+	0	NA	intron (NM_001109628, intron 4 of 13)	intron (NM_001109628, intron 4 of 13)	19182	NM_001109626	69131	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	7.812	nan	0.869	6.179	4.411	2.603	5.772	6.812	5.574	7.109	3.540	2.636	6.541	9.586	6.990	8.358	5.432	8.189	1.699	nan	1.234	1.942	nan	nan	8.786
8429	chr2	90757485	90759088	+	0	NA	intron (NM_018828, intron 7 of 16)	intron (NM_018828, intron 7 of 16)	12916	NM_018828	55935	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	13.644	9.170	2.219	13.189	6.339	4.466	15.967	15.414	7.297	16.508	10.320	5.786	12.314	12.820	13.313	16.548	12.913	12.821	7.261	5.104	4.863	6.938	5.802	5.844	23.838
1094	chr10	9394220	9397250	+	0	NA	Intergenic	(TCCCC)n|Simple_repeat|Simple_repeat	279473	NM_177271	320825	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding	2.250	0.612	0.156	2.696	0.876	0.242	3.696	4.320	2.349	2.552	3.215	1.906	3.570	2.500	5.528	3.268	1.563	3.098	1.225	0.706	0.554	1.910	1.803	2.053	4.808
15173	chr9	62682459	62684053	+	0	NA	intron (NM_176922, intron 1 of 29)	intron (NM_176922, intron 1 of 29)	5401	NM_176922	319480	Mm.34883	NM_176922	ENSMUSG00000032243	Itga11	4732459H24Rik	integrin alpha 11	protein-coding	3.142	0.716	0.397	1.183	1.174	0.519	5.176	4.416	1.465	2.317	0.470	0.658	4.315	3.945	4.531	4.800	3.323	2.458	0.518	1.151	0.553	0.698	0.770	0.479	3.636
11833	chr5	137185153	137187754	+	0	NA	Intergenic	Intergenic	-70246	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	2.947	0.778	0.406	2.810	2.251	1.762	2.340	1.782	4.810	6.898	2.519	0.591	1.284	5.596	3.254	3.063	1.432	3.291	3.188	2.909	1.579	5.208	nan	2.317	3.251
995	chr1	186552844	186558386	+	0	NA	intron (NR_131124, intron 1 of 2)	intron (NR_131124, intron 1 of 2)	3066	NR_131124	320449	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	6.881	5.468	1.818	6.798	3.071	1.885	2.138	2.189	4.001	10.426	2.434	1.197	2.364	3.746	3.422	4.768	2.287	5.090	1.073	1.551	1.281	0.926	0.627	0.543	6.409
837	chr1	166630203	166632508	+	0	NA	intron (NM_001164312, intron 8 of 8)	intron (NM_001164312, intron 8 of 8)	16338	NM_001164312	226604	Mm.330032	NM_001164312	ENSMUSG00000051081	Gm4847	EG226604|Fmo12	predicted gene 4847	protein-coding	2.618	0.410	0.640	nan	1.715	0.906	4.019	3.321	3.360	3.308	0.627	0.564	5.455	4.521	nan	6.259	4.353	4.383	1.625	0.535	0.261	nan	nan	0.673	1.687
7708	chr19	32460971	32464649	+	0	NA	Intergenic	Lx9|LINE|L1	-22959	NM_010799	17330	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	4.803	3.611	1.251	6.592	3.074	1.758	6.477	8.086	3.995	9.188	4.567	2.896	4.388	6.330	6.088	8.063	5.977	6.591	nan	1.631	2.089	5.566	nan	3.615	12.788
9021	chr2	167410513	167419584	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-6662	NM_148929	77031	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	4.663	4.221	2.286	7.113	4.858	4.201	3.563	5.176	3.828	4.067	3.306	1.373	3.609	nan	3.349	4.221	3.385	nan	nan	1.673	2.110	1.642	1.371	1.177	nan
149	chr1	43526015	43532611	+	0	NA	intron (NM_010879, intron 2 of 4)	intron (NM_010879, intron 2 of 4)	83562	NM_010879	17974	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	6.157	4.420	1.497	2.587	2.894	1.619	4.831	6.473	3.285	3.123	2.172	2.243	6.154	5.938	5.902	8.922	4.249	4.344	nan	1.528	0.928	3.349	1.791	1.015	5.651
625	chr1	134635287	134638267	+	0	NA	Intergenic	Intergenic	-9904	NM_009307	20980	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194	synaptotagmin II	protein-coding	0.919	1.358	0.817	nan	0.193	0.158	0.408	0.567	0.382	0.588	0.396	0.286	0.164	nan	0.287	nan	0.323	0.353	6.468	6.632	4.148	7.259	10.042	6.831	nan
6066	chr16	38647033	38655326	+	0	NA	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	61856	NM_020260	12549	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	6.213	1.192	0.505	4.114	4.081	2.622	1.562	3.041	4.134	5.301	0.993	0.882	4.082	7.208	5.716	7.424	4.398	7.853	0.855	1.009	0.681	0.749	0.458	0.447	6.417
14453	chr8	91171287	91173389	+	0	NA	Intergenic	MER63D|DNA|hAT-Blackjack	-36844	NM_010241	14339	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding	4.345	9.443	5.911	3.426	2.936	1.202	1.194	1.932	nan	2.544	2.622	1.648	1.117	1.769	1.904	2.629	2.081	2.296	nan	3.001	1.567	1.514	2.689	1.527	3.231
13878	chr7	148173846	148176681	+	0	NA	Intergenic	Intergenic	2860428	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	nan	nan	1.788	nan	1.035	0.644	0.961	4.133	nan	0.835	9.424	4.124	1.227	1.290	1.555	1.834	2.057	1.137	2.437	2.332	1.556	1.239	5.984	5.764	nan
406	chr1	89551465	89557192	+	0	NA	intron (NM_001037136, intron 1 of 16)	ORR1B1|LTR|ERVL-MaLR	99517	NM_001037136	347722	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	4.048	9.191	5.227	4.004	1.854	0.966	0.735	1.059	1.605	2.290	1.523	0.760	0.822	1.830	1.510	1.986	1.714	2.019	0.641	1.489	0.878	nan	0.512	0.378	2.156
13352	chr7	86618180	86620774	+	0	NA	Intergenic	L1Md_T|LINE|L1	-2834	NM_001011750	257904	Mm.377293	NM_001011750	ENSMUSG00000062042	Olfr294	MOR219-5	olfactory receptor 294	protein-coding	4.748	1.106	0.956	2.330	2.931	2.598	4.114	1.277	3.416	4.672	0.482	0.513	3.108	5.132	2.977	4.994	3.824	nan	0.567	0.499	0.650	nan	0.361	0.418	7.575
7088	chr18	25817888	25826112	+	0	NA	Intergenic	ID4_|SINE|ID	-68017	NM_001174074	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.868	0.494	0.254	0.380	0.209	0.031	1.354	2.067	0.658	0.537	0.683	1.577	0.974	0.390	0.528	nan	0.777	0.860	nan	1.840	1.320	nan	1.727	1.139	0.818
9574	chr3	97484862	97486246	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-74375	NM_146275	258272	Mm.377406	NM_146275	ENSMUSG00000051392	Olfr1402	MOR217-1	olfactory receptor 1402	protein-coding	4.452	9.523	3.121	4.584	2.317	1.615	4.216	4.576	2.541	3.415	3.155	1.587	3.954	4.587	5.475	4.422	3.698	3.949	1.468	1.971	0.930	1.926	1.360	0.795	8.633
10292	chr4	97516913	97522809	+	0	NA	Intergenic	B4|SINE|B4	-62082	NM_001122952	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	3.504	nan	0.594	2.724	2.484	1.299	3.292	3.802	4.211	4.482	1.101	1.466	5.012	4.217	nan	4.463	3.233	5.559	0.848	0.500	0.583	nan	0.474	0.287	2.615
4798	chr14	67624984	67628803	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	88717	NM_001110162	108912	Mm.33831	NM_175384	ENSMUSG00000048922	Cdca2	2610311M19Rik|AI586158	cell division cycle associated 2	protein-coding	7.155	3.994	2.404	5.801	5.919	4.557	5.289	10.409	4.369	7.643	3.861	4.656	6.146	8.387	6.960	6.352	5.232	6.045	5.933	nan	3.528	5.340	4.418	4.843	7.561
13824	chr7	139847955	139855615	+	0	NA	intron (NM_177469, intron 5 of 7)	(CTGGGG)n|Simple_repeat|Simple_repeat	17611	NM_177469	52389	Mm.39863	NM_177469	ENSMUSG00000025475	Adgra1	2900059M17Rik|D7Ertd680e|Gpr123	adhesion G protein-coupled receptor A1	protein-coding	5.478	2.509	0.809	6.381	2.200	1.060	3.707	2.651	nan	5.152	1.909	1.315	6.087	5.937	4.737	6.076	3.509	6.676	1.015	1.127	0.751	1.091	0.574	0.311	8.661
19	chr1	10221801	10224021	+	0	NA	intron (NM_001102430, intron 1 of 37)	intron (NM_001102430, intron 1 of 37)	9759	NM_001102430	211673	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	12.843	12.417	3.608	8.098	4.267	3.979	9.799	9.431	5.998	14.006	6.837	3.857	9.892	8.115	10.925	14.855	7.854	10.327	6.903	3.152	3.672	6.943	6.026	6.954	18.136
763	chr1	156910143	156913389	+	0	NA	intron (NR_027640, intron 1 of 19)	intron (NR_027640, intron 1 of 19)	27621	NM_001159966	78255	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	6.413	3.187	1.437	5.675	3.830	1.958	1.722	2.071	3.456	4.090	2.304	2.363	1.807	3.018	3.276	4.395	2.466	5.158	2.551	2.556	1.706	2.999	nan	1.960	4.958
8874	chr2	156270901	156278443	+	0	NA	intron (NM_172674, intron 8 of 17)	intron (NM_172674, intron 8 of 17)	-37801	NM_027585	70873	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	6.258	0.549	0.248	4.079	4.140	2.557	7.783	9.888	nan	nan	4.576	3.185	8.171	8.958	5.835	8.328	6.450	5.855	nan	1.606	1.357	2.749	2.052	1.624	7.436
3332	chr12	55891510	55892526	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	55652	NM_001037756	52592	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	6.102	nan	0.921	2.318	2.900	3.182	3.321	2.084	2.057	3.323	0.609	1.149	3.789	4.525	2.433	4.791	5.723	3.380	0.835	1.867	0.910	0.322	0.942	0.652	4.755
14406	chr8	86587521	86593451	+	0	NA	Intergenic	Intergenic	-23896	NM_172912	244562	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding	5.589	8.880	3.587	5.507	2.746	1.635	2.720	5.362	nan	5.605	2.101	1.660	4.528	4.893	5.078	5.752	3.887	4.822	nan	1.394	1.283	3.855	1.188	1.589	6.666
7853	chr19	47610470	47613209	+	0	NA	intron (NM_009289, intron 3 of 18)	intron (NM_009289, intron 3 of 18)	31820	NM_001164639	20874	Mm.281011	NM_009289	ENSMUSG00000025060	Slk	9A2|AV021402|AW411554|Etk4|SMAK|Stk2|mKIAA0204|mSLK	STE20-like kinase	protein-coding	7.212	8.449	3.182	6.818	4.135	2.100	6.819	8.133	4.742	5.207	6.532	2.261	6.966	9.770	7.945	9.942	7.453	9.597	0.931	1.318	0.776	2.182	1.201	1.128	10.382
5948	chr16	25672526	25674940	+	0	NA	Intergenic	Intergenic	-10032	NM_001127259	22061	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	4.388	0.791	0.472	1.841	1.658	0.727	5.395	3.057	3.620	3.052	0.968	0.890	5.808	4.620	3.036	3.846	3.200	4.809	0.749	0.773	0.254	0.425	nan	0.267	3.081
12786	chr6	134774911	134782423	+	0	NA	intron (NM_001048054, intron 1 of 6)	ORR1G|LTR|ERVL-MaLR	13961	NM_130447	70686	Mm.491182	NM_130447	ENSMUSG00000030203	Dusp16	3830417M17Rik|AW558566|D6Ertd213e|MKP-7|MKP7|Mkpm	dual specificity phosphatase 16	protein-coding	6.640	3.223	1.766	5.335	5.380	4.094	6.128	9.546	4.849	6.081	4.452	3.029	6.940	9.806	nan	8.507	6.891	7.132	nan	2.418	1.951	3.201	3.113	2.849	nan
14289	chr8	72523808	72527932	+	0	NA	intron (NM_027485, intron 1 of 2)	MurERV4-int|LTR|ERVK	22440	NM_027485	70625	Mm.235885	NM_027485	ENSMUSG00000045248	Med26	5730493L18Rik|AI414941|AW495270|Crsp7	mediator complex subunit 26	protein-coding	6.007	6.763	4.815	4.714	5.911	4.924	4.157	6.754	3.669	3.252	4.370	2.690	5.238	5.255	5.052	5.696	6.474	4.408	nan	3.399	3.956	3.271	2.341	2.365	nan
11378	chr5	77811194	77820584	+	0	NA	Intergenic	Intergenic	350401	NR_131050	69370	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	6.091	1.322	0.629	2.843	2.724	1.741	6.547	4.843	3.684	3.598	1.586	0.970	7.056	6.174	5.239	nan	4.787	5.803	1.084	0.717	0.640	0.837	1.039	0.688	4.079
9725	chr3	116120622	116123507	+	0	NA	intron (NM_011693, intron 4 of 8)	Lx5|LINE|L1	7624	NM_011693	22329	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	1.373	0.901	1.187	1.008	1.288	1.396	1.692	1.080	1.079	nan	0.762	0.779	1.068	1.071	0.902	nan	1.507	1.288	4.936	3.016	3.800	1.686	nan	9.125	nan
7118	chr18	34940093	34942946	+	0	NA	intron (NM_010481, intron 11 of 16)	intron (NM_010481, intron 11 of 16)	-9516	NM_144866	225363	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	3.605	1.875	2.381	2.591	5.451	4.544	2.246	4.171	3.282	2.188	1.738	2.966	2.458	2.854	1.292	1.711	3.435	3.125	1.524	2.226	2.872	0.746	2.045	1.391	1.746
1880	chr11	3060749	3066177	+	0	NA	Intergenic	Intergenic	-60558	NR_003517	236604	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	14.116	25.123	25.794	16.581	27.543	25.277	10.985	15.671	15.365	15.687	8.935	8.603	11.421	11.095	10.175	17.122	20.496	20.032	14.741	15.020	18.499	9.744	9.395	10.694	21.303
13634	chr7	119996965	120001789	+	0	NA	Intergenic	L1Md_T|LINE|L1	99266	NR_126475	73919	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	3.504	0.780	0.484	2.699	1.358	0.670	4.275	5.958	2.192	2.544	1.173	0.933	4.857	nan	5.468	4.518	3.478	3.871	5.499	2.480	1.662	4.958	2.830	2.887	4.935
14692	chr8	122939436	122953164	+	0	NA	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	95984	NR_037865	77087	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	3.121	1.116	0.323	3.315	1.168	0.781	2.726	3.959	2.232	2.992	0.820	0.888	3.896	4.092	4.457	nan	2.852	4.140	3.448	2.714	2.489	7.780	2.338	1.700	7.154
3389	chr12	70781109	70783517	+	0	NA	Intergenic	Intergenic	-43201	NM_028127	319710	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	13.088	10.082	2.781	12.027	8.321	6.609	11.390	9.603	6.233	22.053	8.184	3.535	11.261	14.217	11.546	13.524	10.171	11.195	4.889	2.900	4.201	4.980	3.996	5.340	22.754
4063	chr13	45751614	45755429	+	0	NA	intron (NM_001199304, intron 4 of 6)	intron (NM_001199304, intron 4 of 6)	211470	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	4.136	0.485	0.446	3.099	5.762	3.206	2.746	4.051	4.773	5.027	1.493	0.764	4.093	8.252	4.430	6.780	3.927	5.543	0.907	nan	0.817	0.658	0.758	0.447	5.817
4883	chr14	78263713	78265943	+	0	NA	Intergenic	Intergenic	43215	NM_011613	21943	Mm.249221	NM_011613	ENSMUSG00000022015	Tnfsf11	Ly109l|ODF|OPGL|RANKL|Trance	tumor necrosis factor (ligand) superfamily, member 11	protein-coding	3.087	2.509	1.124	5.358	2.123	0.833	0.299	0.664	1.090	0.798	0.547	0.403	1.212	2.164	2.116	0.964	0.883	1.116	7.035	4.458	1.502	4.737	6.850	2.972	3.026
4805	chr14	68494574	68497326	+	0	NA	Intergenic	Intergenic	37739	NM_007402	11500	Mm.261495	NM_007402	ENSMUSG00000022056	Adam7	ADAM 7|EAP1|EAPI	a disintegrin and metallopeptidase domain 7	protein-coding	5.642	3.951	1.514	4.234	2.514	0.547	4.841	7.179	4.447	4.276	1.745	1.281	5.611	7.960	5.541	7.607	3.839	7.525	1.234	nan	0.380	1.790	0.959	0.547	7.565
12747	chr6	128922387	128926635	+	0	NA	Intergenic	IAPEz-int|LTR|ERVK	7334	NR_106107	102465757		NR_106107	ENSMUSG00000098359	Mir7649	mmu-mir-7649	microRNA 7649	ncRNA	1.733	6.184	2.664	1.143	0.472	0.260	0.818	nan	1.235	1.195	6.240	2.528	0.771	0.734	1.108	nan	0.959	1.144	1.067	0.723	0.462	0.518	0.217	0.112	0.791
9181	chr3	27102987	27113888	+	0	NA	intron (NM_007900, intron 22 of 24)	B3|SINE|B2	45417	NM_007900	13605	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536|mKIAA4037	ect2 oncogene	protein-coding	2.087	1.703	0.852	1.912	1.528	0.857	nan	0.716	nan	1.501	1.656	1.568	1.159	1.939	nan	1.848	1.030	2.264	4.008	2.627	1.870	5.628	3.166	1.991	1.724
15005	chr9	43934390	43943937	+	0	NA	Intergenic	Intergenic	-104221	NM_009382	21838	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding	6.002	2.747	0.950	8.081	3.435	2.565	2.316	2.003	3.763	5.844	1.886	1.147	1.706	3.955	nan	nan	1.997	4.667	1.713	1.288	1.710	nan	0.832	0.837	6.064
8420	chr2	85371187	85374638	+	0	NA	Intergenic	Intergenic	-18988	NM_001011534	258166	Mm.389313	NM_001011534	ENSMUSG00000075222	Olfr988	MOR203-5P	olfactory receptor 988	protein-coding	1.967	0.654	0.518	1.122	0.425	0.428	2.164	2.044	1.383	1.090	7.129	2.224	2.060	1.427	2.652	4.464	3.329	2.709	0.658	1.033	0.441	1.151	0.829	0.305	1.632
1998	chr11	19828496	19834051	+	0	NA	Intergenic	B3|SINE|B2	-93169	NM_033523	114716	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	2.653	nan	1.196	2.147	5.012	4.208	3.631	4.014	3.506	3.264	2.259	3.015	3.057	4.573	3.106	3.302	3.352	nan	1.855	1.913	2.121	1.871	2.258	1.519	1.979
2930	chr11	108133695	108135101	+	0	NA	intron (NM_011101, intron 3 of 16)	intron (NM_011101, intron 3 of 16)	137550	NR_106082	102465705		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	3.054	7.988	2.276	1.930	2.036	0.716	2.379	4.059	3.458	2.576	1.664	1.317	3.074	4.021	4.045	3.474	2.273	4.034	2.555	1.018	0.722	nan	1.821	1.296	2.620
5387	chr15	77711604	77725631	+	0	NA	3' UTR (NM_001134802, exon 5 of 5)	3' UTR (NM_001134802, exon 5 of 5)	-10455	NM_173743	71898	Mm.422856	NM_173743	ENSMUSG00000068246	Apol9b	2310016F22Rik	apolipoprotein L 9b	protein-coding	9.279	nan	0.875	nan	4.892	3.777	10.820	11.515	4.167	4.989	4.248	2.093	9.002	9.254	7.830	7.102	7.783	6.947	2.671	1.912	2.472	nan	2.376	2.782	9.149
6545	chr17	32128161	32133290	+	0	NA	intron (NM_008716, intron 31 of 32)	RLTR12D|LTR|ERVK	36127	NM_008716	18131	Mm.439741	NM_008716	ENSMUSG00000038146	Notch3	AW229011|N3|hpbk	notch 3	protein-coding	3.931	3.098	2.852	3.177	6.702	4.346	4.843	3.811	4.659	4.963	7.270	5.929	3.957	7.273	2.315	nan	3.283	3.824	1.129	1.639	0.912	0.988	1.378	1.001	1.427
6774	chr17	63570170	63571727	+	0	NA	Intergenic	Intergenic	-70368	NM_015794	50758	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	3.512	0.849	0.057	1.343	0.462	0.143	0.985	0.462	2.011	2.016	0.266	0.141	2.949	3.533	2.998	3.905	3.048	4.011	0.575	0.229	0.339	0.841	0.234	0.121	4.588
1367	chr10	66593516	66595081	+	0	NA	Intergenic	Intergenic	326086	NR_138560	68488	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	3.793	0.645	0.584	2.732	2.166	2.354	2.140	3.141	3.419	3.995	1.782	2.344	3.004	3.215	2.982	3.413	3.522	3.783	0.634	0.866	0.623	0.807	0.653	0.436	1.631
5236	chr15	60609068	60614028	+	0	NA	Intergenic	L1MC5|LINE|L1	-211417	NR_030696	320469	Mm.230853	NM_177166		9930014A18Rik	-	RIKEN cDNA 9930014A18 gene	ncRNA	5.029	0.670	0.552	3.239	4.424	3.504	7.858	9.408	4.785	nan	3.203	3.669	10.383	6.210	7.488	6.844	7.190	5.455	1.568	0.990	0.954	1.450	1.749	1.748	4.542
12211	chr6	48772178	48774895	+	0	NA	Intergenic	Intergenic	-2685	NM_031247	83408	Mm.333050	NM_031247	ENSMUSG00000039264	Gimap3	2010110D23Rik|Gimap5|Ian4	GTPase, IMAP family member 3	protein-coding	4.583	1.644	0.715	4.293	2.349	1.469	6.187	6.723	1.992	2.181	1.476	1.314	7.411	4.615	4.528	8.342	4.050	5.130	nan	0.524	0.758	1.204	0.748	0.659	2.327
10765	chr4	138002623	138007405	+	0	NA	intron (NM_172703, intron 2 of 34)	Lx5|LINE|L1	11558	NM_172703	230861	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	nan	0.903	0.426	0.922	0.528	0.134	0.700	1.189	nan	1.102	0.414	0.424	1.361	2.144	1.120	1.313	0.723	nan	2.907	1.353	1.202	4.714	nan	1.332	1.056
1070	chr10	3133521	3135699	+	0	NA	Intergenic	ORR1A0-int|LTR|ERVL-MaLR	-1417	NR_045946	619314	Mm.145928	NR_045946	ENSMUSG00000110909	B020014A21Rik	-	RIKEN cDNA B020014A21 gene	ncRNA	10.483	6.529	1.494	11.361	4.153	1.999	4.276	8.105	5.393	11.229	6.233	3.315	4.853	7.919	8.917	9.649	5.875	9.572	3.333	2.158	2.060	6.394	4.098	3.250	15.077
7169	chr18	38036296	38052600	+	0	NA	Intergenic	Intergenic	-45479	NM_001205336	106952	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	7.509	1.997	0.896	5.444	4.624	2.280	4.587	5.954	6.351	6.906	3.099	2.643	8.996	7.733	5.539	6.595	6.671	8.002	2.610	1.526	0.879	2.354	1.956	1.263	6.583
3117	chr11	120458723	120461096	+	0	NA	intron (NM_152807, intron 2 of 5)	intron (NM_152807, intron 2 of 5)	1780	NM_152807	67291	Mm.103384	NM_152807	ENSMUSG00000049957	Ccdc137	3110023B02Rik	coiled-coil domain containing 137	protein-coding	5.698	12.801	3.431	7.639	5.317	3.978	5.369	4.957	3.972	nan	5.306	2.787	4.707	5.507	6.883	7.959	4.504	7.210	4.243	nan	4.465	7.176	4.388	6.388	10.059
7992	chr2	19548544	19553039	+	0	NA	intron (NM_027600, intron 1 of 16)	intron (NM_027600, intron 1 of 16)	3119	NM_027600	70909	Mm.158488	NM_027600	ENSMUSG00000026734	4921504E06Rik	4921522E24Rik	RIKEN cDNA 4921504E06 gene	protein-coding	1.849	7.088	5.230	0.870	0.907	0.621	0.534	0.651	1.044	0.899	0.533	0.443	0.560	0.751	0.686	1.209	1.241	1.054	0.696	0.786	0.643	0.668	0.594	0.487	0.829
14138	chr8	35205938	35210905	+	0	NA	Intergenic	Intergenic	-167320	NM_177741	244416	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	5.904	7.949	2.572	4.846	3.170	1.739	3.296	6.394	3.275	5.063	3.400	2.549	4.594	4.033	4.727	5.945	4.458	5.720	3.257	2.912	2.007	4.150	2.268	1.891	7.479
13066	chr7	29581105	29582270	+	0	NA	Intergenic	Intergenic	-76227	NM_001081028	74206	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	6.234	19.228	4.328	9.239	1.724	0.506	5.064	5.848	4.533	5.397	3.450	1.697	3.968	4.572	6.773	6.889	2.913	9.621	1.968	0.663	1.327	3.431	0.788	0.486	10.727
8591	chr2	119950804	119956448	+	0	NA	intron (NM_001164274, intron 18 of 22)	B1_Mus2|SINE|Alu	-19073	NM_011941	26390	Mm.330501	NM_011941	ENSMUSG00000033902	Mapkbp1	2810483F24Rik|AW123212|JNKBP-1|Jnkbp1|mKIAA0596	mitogen-activated protein kinase binding protein 1	protein-coding	5.841	2.270	1.038	5.939	3.168	1.680	3.771	3.065	3.638	3.819	3.594	1.159	3.566	5.232	4.719	5.989	3.238	7.413	0.873	0.841	0.622	1.035	0.798	0.350	6.561
12183	chr6	39223620	39226388	+	0	NA	Intergenic	Intergenic	-18231	NM_001033430	338523	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|ENSMUSG00000073143|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	5.214	1.587	1.417	2.531	4.865	3.097	5.136	7.528	2.796	3.515	3.848	3.147	4.526	6.323	4.082	4.621	5.610	2.801	nan	2.249	2.487	nan	nan	1.268	3.087
11819	chr5	136868218	136874708	+	0	NA	intron (NM_001346699, intron 1 of 12)	ID_B1|SINE|B4	11644	NM_024474	140709	Mm.295020	NM_024474	ENSMUSG00000004415	Col26a1	9430032K24Rik|BC002218|Col26a|Emid2|Emu2	collagen, type XXVI, alpha 1	protein-coding	7.309	1.311	0.873	5.485	6.764	4.195	8.534	6.377	7.421	8.210	3.158	1.234	8.385	13.105	8.651	9.571	5.517	10.230	1.072	1.259	0.963	1.880	nan	1.056	6.495
4332	chr13	101261907	101263814	+	0	NA	intron (NR_045846, intron 2 of 5)	L1Md_F3|LINE|L1	8541	NR_045846	71174	Mm.399537	NR_045846	ENSMUSG00000100733	4933416M06Rik	-	RIKEN cDNA 4933416M06 gene	ncRNA	6.200	5.556	2.253	5.063	3.158	1.559	6.194	6.618	2.887	4.761	3.932	2.545	5.137	6.246	6.306	5.637	4.222	4.655	2.453	1.792	2.102	2.299	2.554	2.263	8.331
14020	chr8	12514349	12517773	+	0	NA	Intergenic	MIR|SINE|MIR	-56988	NM_024279	78634	Mm.116871	NM_024279	ENSMUSG00000010435	Spaca7	1700094C09Rik	sperm acrosome associated 7	protein-coding	0.690	0.434	0.360	0.287	0.277	0.264	0.344	1.190	0.819	0.760	6.155	1.177	0.232	0.399	0.446	0.747	0.568	0.927	0.862	0.516	0.638	1.341	0.663	0.613	0.503
12304	chr6	71442393	71446090	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	-3604	NM_024288	68477	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	6.393	6.989	2.459	8.614	4.146	3.808	8.431	10.049	4.909	9.540	4.952	4.290	7.674	8.059	7.998	9.992	7.551	8.227	6.900	4.247	3.786	5.795	6.900	7.038	9.191
12293	chr6	67110098	67113395	+	0	NA	Intergenic	Intergenic	-74339	NM_007836	13197	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	4.391	0.896	0.500	3.208	2.816	2.382	3.477	6.080	3.220	5.260	4.900	1.670	4.066	7.917	4.397	5.919	5.518	5.237	1.649	1.455	0.891	1.329	1.631	1.043	2.584
14930	chr9	30252192	30254750	+	0	NA	Intergenic	Intergenic	-173858	NM_028874	102607	Mm.35084	NM_028874	ENSMUSG00000031993	Snx19	3526401K03Rik|AI195321|AI848208|mKIAA0254	sorting nexin 19	protein-coding	3.758	0.904	0.369	4.611	2.406	0.593	2.486	2.161	3.523	5.675	0.985	0.555	4.335	5.297	3.450	9.492	4.243	4.313	0.467	0.722	0.335	0.898	0.709	0.638	5.914
12031	chr6	5204317	5206277	+	0	NA	Intergenic	Intergenic	-11351	NM_011134	18979	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	7.907	4.427	2.350	7.714	2.350	1.590	7.331	10.813	5.861	6.554	3.934	2.008	9.498	9.037	9.655	12.025	9.213	9.812	1.218	1.246	0.721	3.290	1.187	0.534	9.326
111	chr1	37671201	37673995	+	0	NA	intron (NM_028096, intron 1 of 9)	intron (NM_028096, intron 1 of 9)	47213	NM_028096	72097	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	8.928	3.667	1.142	3.964	2.078	0.987	7.834	7.472	3.416	3.919	4.725	3.755	7.514	8.525	6.542	9.472	9.521	5.957	1.525	1.434	0.962	1.980	2.059	1.242	9.076
14843	chr9	3022003	3030361	+	0	NA	Intergenic	GSAT_MM|Satellite|Satellite	12561	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	nan	nan	27.358	13.445	18.411	23.065	14.096	nan	14.490	11.740	13.877	19.627	10.062	8.649	6.268	nan	nan	nan	nan	18.315	38.073	6.965	18.336	27.254	nan
4776	chr14	65762632	65764771	+	0	NA	3' UTR (NM_028903, exon 9 of 9)	3' UTR (NM_028903, exon 9 of 9)	-42210	NM_023209	52033	Mm.24337	NM_023209	ENSMUSG00000022033	Pbk	2810434B10Rik|AW538537|D14Ertd732e|TOPK	PDZ binding kinase	protein-coding	1.477	6.572	5.649	1.503	1.201	0.630	0.568	0.853	0.688	0.843	0.387	0.628	0.348	0.622	0.607	0.920	0.716	0.914	1.317	nan	1.333	0.647	1.490	1.634	1.208
5038	chr15	10435435	10436863	+	0	NA	Intergenic	LTR10_RN|LTR|ERVK	34367	NM_030046	78244	Mm.297862	NM_030046	ENSMUSG00000044224	Dnajc21	4930461P20Rik|9930116P15Rik	DnaJ heat shock protein family (Hsp40) member C21	protein-coding	1.115	0.712	0.214	0.749	0.399	0.079	1.726	1.956	1.150	1.809	0.529	0.138	2.700	4.090	1.904	2.545	3.713	1.698	0.520	0.355	0.137	0.328	0.318	0.066	1.149
6206	chr16	92234125	92235833	+	0	NA	Intergenic	Intergenic	-57410	NM_134110	246133	Mm.156736	NM_134110	ENSMUSG00000039672	Kcne2	2200002I16Rik|AW048273|MiRP1	potassium voltage-gated channel, Isk-related subfamily, gene 2	protein-coding	8.311	nan	0.666	4.187	5.204	1.946	4.915	9.437	7.313	8.011	3.108	4.246	6.502	6.505	6.503	7.730	4.185	8.427	0.726	1.066	0.707	nan	0.798	0.476	5.411
5517	chr15	84681241	84687715	+	0	NA	intron (NM_001346662, intron 2 of 8)	intron (NM_001346662, intron 2 of 8)	3480	NM_146061	109270	Mm.291372	NM_146061	ENSMUSG00000036106	Prr5	AU043908|Arhgap8|C030017C09Rik|C78947|Protor-1|Protor1	proline rich 5 (renal)	protein-coding	nan	3.337	1.216	nan	0.638	0.427	nan	nan	nan	2.682	0.902	0.995	1.040	1.136	nan	nan	nan	nan	nan	1.581	1.419	6.295	2.602	2.904	nan
3577	chr12	86812545	86817578	+	0	NA	Intergenic	Intergenic	69753	NM_145836	238330	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	9.780	5.603	1.877	10.201	4.748	2.629	7.002	8.532	6.647	9.817	4.986	4.928	8.370	11.416	9.845	11.955	8.002	8.839	4.130	1.813	1.489	5.321	2.656	2.172	14.050
14718	chr8	124522495	124529996	+	0	NA	intron (NM_029746, intron 2 of 17)	B1_Mur2|SINE|Alu	5478	NM_029746	76332	Mm.240108	NM_029746	ENSMUSG00000031979	Cog2	1190002B08Rik|2700012E02Rik|C86089|Ldlc	component of oligomeric golgi complex 2	protein-coding	2.623	nan	0.395	nan	2.799	0.980	nan	nan	2.719	3.650	1.020	0.576	2.841	6.173	nan	4.813	2.630	nan	nan	2.069	1.323	nan	1.086	nan	nan
7808	chr19	45649443	45652565	+	0	NA	intron (NM_013907, intron 1 of 8)	B3|SINE|B2	9189	NM_013907	30838	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	4.428	5.648	1.085	nan	1.538	0.621	5.146	4.164	3.638	5.372	1.970	1.435	6.714	7.182	6.626	10.695	6.832	6.900	0.383	0.526	0.622	0.703	0.304	0.184	15.833
559	chr1	129156733	129158916	+	0	NA	Intergenic	Intergenic	-115480	NM_172485	210417	Mm.380518	NM_172485	ENSMUSG00000042581	Thsd7b	1700074E13Rik|B930082A18|D130067I03Rik	thrombospondin, type I, domain containing 7B	protein-coding	5.092	nan	0.732	2.926	3.467	1.943	4.890	5.577	4.167	3.633	1.636	2.599	5.318	5.453	5.180	7.580	3.462	5.330	nan	1.067	0.345	0.788	1.216	0.513	4.920
5679	chr15	100507831	100518755	+	0	NA	intron (NM_033476, intron 11 of 15)	intron (NM_033476, intron 11 of 15)	-18054	NM_153407	207785	Mm.294969	NM_153407	ENSMUSG00000044636	Csrnp2	CSRNP-2|Csnrp2|taip-12	cysteine-serine-rich nuclear protein 2	protein-coding	4.741	2.023	0.767	1.619	1.718	1.251	7.717	10.819	2.505	3.762	0.998	1.023	6.519	5.782	5.260	nan	4.768	3.866	0.710	0.787	0.777	1.322	0.771	0.799	4.745
7010	chr18	9376839	9378989	+	0	NA	intron (NM_026484, intron 2 of 9)	intron (NM_026484, intron 2 of 9)	72236	NM_026484	67974	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	3.490	1.145	0.987	3.991	1.131	0.498	0.842	1.362	2.606	1.836	1.885	0.733	nan	1.806	1.044	2.004	1.019	2.902	1.024	0.370	0.285	0.983	1.034	0.428	1.340
6579	chr17	35080473	35083282	+	0	NA	intron (NM_001163192, intron 3 of 5)	B1_Mur1|SINE|Alu	3718	NM_001163192	433099	Mm.328993	NM_001163192	ENSMUSG00000034923	Ly6g6f	CJ068215	lymphocyte antigen 6 complex, locus G6F	protein-coding	4.256	1.098	0.788	0.976	2.687	2.764	6.338	4.268	1.653	1.338	1.017	3.189	5.678	4.676	2.649	3.747	2.823	3.206	0.987	0.934	1.325	1.452	0.868	1.053	2.042
5655	chr15	99794686	99796447	+	0	NA	intron (NM_023063, intron 5 of 7)	B1_Mus2|SINE|Alu	-23051	NM_028015	71949	Mm.390821	NM_028015	ENSMUSG00000023021	Cers5	2310081H14Rik|AU045339|AW544927|Lass5|Trh4	ceramide synthase 5	protein-coding	6.854	0.871	0.317	2.689	4.254	1.833	11.925	14.541	5.634	7.625	1.848	0.903	9.478	11.136	8.914	8.703	10.094	6.257	0.657	0.965	0.765	0.679	0.831	0.576	5.610
7951	chr2	6243386	6245317	+	0	NA	intron (NR_040333, intron 1 of 6)	RLTR20C1_MM|LTR|ERVK	-31357	NM_024208	67856	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	7.748	13.127	3.763	10.779	5.159	4.224	7.431	10.524	5.022	15.114	8.387	4.211	7.930	8.720	9.943	12.743	9.983	9.886	5.233	2.519	4.492	5.701	4.520	6.636	18.846
14319	chr8	73327879	73329254	+	0	NA	intron (NM_010687, intron 1 of 14)	intron (NM_010687, intron 1 of 14)	24974	NM_001317391	16795	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	3.175	7.768	2.714	4.901	2.784	2.605	nan	5.414	nan	3.865	2.372	1.610	2.447	3.903	4.133	3.815	2.774	3.063	1.414	0.832	2.703	1.824	1.783	1.834	5.052
9254	chr3	40753030	40755766	+	0	NA	intron (NM_011020, intron 3 of 18)	L1MB7|LINE|L1	8785	NM_011020	18415	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	4.979	7.950	1.906	7.237	2.896	2.389	6.759	6.018	nan	11.771	4.243	2.684	5.914	8.731	7.178	7.642	5.126	6.977	nan	1.950	2.195	nan	2.726	4.334	11.261
9542	chr3	95680510	95684375	+	0	NA	intron (NM_001301705, intron 6 of 17)	intron (NM_001301705, intron 6 of 17)	5475	NM_144899	229595	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	3.397	0.640	0.837	2.082	2.926	2.513	6.043	5.275	2.181	1.922	nan	0.632	5.251	7.042	3.871	4.806	5.518	3.186	0.761	0.667	0.960	0.364	0.721	0.853	3.201
6777	chr17	64105842	64110167	+	0	NA	intron (NM_008000, intron 11 of 13)	intron (NM_008000, intron 11 of 13)	-57332	NR_130982	68771	Mm.443351	NR_130982		1110058D11Rik	-	RIKEN cDNA 1110058D11 gene	ncRNA	0.451	0.847	0.554	0.355	0.354	0.068	0.412	0.275	nan	0.265	0.293	0.132	0.063	nan	0.202	0.457	0.442	0.262	2.619	3.195	2.067	2.649	2.536	1.724	0.422
6236	chr16	93832515	93834872	+	0	NA	intron (NM_001045529, intron 1 of 16)	intron (NM_001045529, intron 1 of 16)	1572	NM_001045529	338467	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	10.719	10.092	3.342	9.778	7.096	6.478	11.669	10.353	6.696	15.261	5.410	3.329	13.106	11.525	11.154	14.205	8.770	9.910	nan	2.631	3.236	4.261	2.609	5.316	16.509
15722	chrX	45693803	45699419	+	0	NA	Intergenic	L1Md_F3|LINE|L1	605707	NM_026841	68800	Mm.336041	NM_026841	ENSMUSG00000037086	Prr32	1110059M19Rik	proline rich 32	protein-coding	3.235	2.455	1.240	3.028	2.971	1.983	3.380	3.599	1.642	4.219	1.954	1.737	2.493	4.608	2.912	3.922	3.262	2.576	1.795	1.494	1.583	1.714	2.218	2.648	5.494
12731	chr6	128071030	128075911	+	0	NA	intron (NM_175414, intron 2 of 8)	A-rich|Low_complexity|Low_complexity	70108	NM_175414	109246	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597	tetraspanin 9	protein-coding	7.487	nan	0.484	9.578	5.664	2.471	9.029	7.257	5.700	7.424	2.586	1.503	9.362	11.550	9.408	13.694	7.468	9.778	0.801	1.659	0.949	1.185	1.554	0.733	10.155
8949	chr2	163535868	163539452	+	0	NA	intron (NM_001312907, intron 2 of 10)	intron (NM_001312907, intron 2 of 10)	4061	NR_027970	68314	Mm.46190	NM_197983	ENSMUSG00000046840	Hnf4aos	0610008F07Rik	hepatic nuclear factor 4 alpha, opposite strand	ncRNA	3.964	6.104	1.937	6.249	1.495	0.617	1.113	1.577	2.141	2.808	1.499	0.819	1.232	2.792	2.187	4.139	1.986	3.301	nan	2.188	0.820	1.134	0.643	0.508	3.810
580	chr1	130293017	130296681	+	0	NA	Intergenic	ORR1B1|LTR|ERVL-MaLR	128194	NM_007827	13137	Mm.436759	NM_007827	ENSMUSG00000026401	Cd55b	AI323748|Daf|Daf-TM|Daf2|TM-DAF	CD55 molecule, decay accelerating factor for complement B	protein-coding	5.016	nan	1.102	2.296	5.579	4.618	5.567	4.200	4.018	3.063	2.695	2.889	6.160	4.894	4.091	4.897	5.139	4.497	nan	1.243	1.186	0.841	0.923	1.371	2.271
2800	chr11	100955747	100957698	+	0	NA	TTS (NM_008986)	TTS (NM_008986)	13895	NM_008986	19285	Mm.21864	NM_008986	ENSMUSG00000004044	Ptrf	2310075E07Rik|AW546441|Cav-p60|Cavin	polymerase I and transcript release factor	protein-coding	5.344	8.108	3.540	7.553	3.702	2.813	3.083	5.994	6.061	7.028	6.198	4.243	5.780	5.517	5.842	8.131	5.110	7.631	4.469	nan	3.894	5.954	nan	4.805	10.073
7791	chr19	43958979	43965968	+	0	NA	intron (NM_030703, intron 7 of 8)	LTR82A|LTR|ERVL	-22275	NM_028029	71972	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	5.952	1.048	0.783	3.395	2.511	1.469	8.055	10.410	3.286	3.331	4.527	4.183	5.970	5.898	6.593	6.966	7.983	nan	0.532	0.977	0.669	0.734	1.240	0.687	7.925
10053	chr4	46567053	46570132	+	0	NA	intron (NM_001164804, intron 1 of 11)	MIR|SINE|MIR	-2152	NM_178893	107684	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	8.103	3.649	1.997	4.076	3.238	1.875	7.063	8.497	4.380	4.922	6.314	4.684	4.866	6.924	5.651	6.351	3.578	4.543	2.087	2.068	2.087	nan	1.022	1.108	7.562
9858	chr3	145311555	145316938	+	0	NA	exon (NM_027770, exon 3 of 60)	exon (NM_027770, exon 3 of 60)	21774	NM_001317733	71355	Mm.235570	NM_027770	ENSMUSG00000028197	Col24a1	5430404K19Rik	collagen, type XXIV, alpha 1	protein-coding	5.788	2.002	0.809	6.443	3.773	1.681	3.494	3.407	3.175	4.902	2.441	2.021	2.810	5.100	5.178	4.307	2.145	5.760	1.476	1.226	1.255	1.921	1.085	1.268	8.126
6632	chr17	43704965	43707424	+	0	NA	intron (NM_018887, intron 7 of 11)	intron (NM_018887, intron 7 of 11)	38822	NM_018887	56050	Mm.17991	NM_018887	ENSMUSG00000023963	Cyp39a1	mCYP39A1	cytochrome P450, family 39, subfamily a, polypeptide 1	protein-coding	5.890	3.526	1.300	2.926	1.432	0.513	4.542	3.640	2.700	3.882	3.506	0.944	2.867	3.449	4.004	5.774	4.283	2.352	1.098	0.547	0.329	1.045	0.887	0.361	5.392
10275	chr4	94740207	94747265	+	0	NA	intron (NM_001290549, intron 1 of 22)	intron (NM_001290549, intron 1 of 22)	4447	NM_001290551	21687	Mm.14313	NM_013690	ENSMUSG00000006386	Tek	AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2	endothelial-specific receptor tyrosine kinase	protein-coding	2.763	nan	0.371	3.504	2.113	1.488	4.628	5.834	nan	4.140	5.870	2.898	4.433	5.858	nan	7.224	3.155	3.192	1.114	0.548	0.603	nan	0.681	0.395	7.655
11652	chr5	121061517	121064599	+	0	NA	Intergenic	Intergenic	-52966	NM_001302344	19894	Mm.181166	NM_011286	ENSMUSG00000029608	Rph3a	2900002P20Rik|AU022689|AW108370	rabphilin 3A	protein-coding	6.182	7.507	1.843	6.125	3.481	2.296	5.483	5.585	3.825	5.456	4.231	2.768	4.202	7.553	6.501	7.010	4.386	5.289	nan	nan	2.247	4.885	nan	1.850	7.913
5818	chr16	14931398	14933481	+	0	NA	Intergenic	Intergenic	25793	NM_025769	66793	Mm.100270	NM_025769	ENSMUSG00000068617	Efcab1	4930449A16Rik|5430404L10Rik	EF hand calcium binding domain 1	protein-coding	1.241	0.444	0.490	0.606	0.385	0.058	0.304	2.291	1.454	nan	5.231	1.520	0.293	1.048	0.550	nan	0.658	1.192	1.049	0.679	0.504	0.815	0.685	0.608	0.794
2523	chr11	79270946	79272333	+	0	NA	Intergenic	ORR1A4|LTR|ERVL-MaLR	-16944	NM_019653	78889	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	3.208	1.274	1.104	1.454	1.606	0.978	1.268	0.581	1.664	2.209	1.408	0.362	2.201	5.165	nan	2.748	3.066	2.622	0.769	1.117	nan	0.711	0.545	0.612	1.865
9972	chr4	33332878	33337244	+	0	NA	intron (NM_011884, intron 6 of 15)	Lx5c|LINE|L1	24750	NM_001305273	24018	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	10.104	12.504	5.046	8.993	7.396	5.874	7.090	9.114	6.231	12.483	7.086	5.473	7.513	10.225	10.044	10.809	5.986	10.380	5.841	2.529	3.287	5.445	3.361	4.147	12.199
4618	chr14	42009767	42013811	+	0	NA	Intergenic	Intergenic	83488	NR_073362	73553	Mm.243777	NM_028570	ENSMUSG00000090462	1700091H14Rik	100041930|Gm3578	RIKEN cDNA 1700091H14 gene	ncRNA	5.299	1.200	0.775	3.743	3.274	1.956	4.154	4.854	5.795	6.685	1.179	0.862	5.039	6.013	4.512	7.164	5.018	5.407	0.628	1.096	0.656	0.606	0.492	0.282	4.846
5103	chr15	34265318	34266868	+	0	NA	intron (NM_033521, intron 2 of 6)	B1_Mus1|SINE|Alu	28067	NM_033521	114128	Mm.197518	NM_033521	ENSMUSG00000022257	Laptm4b	C330023P13Rik|LAPTM4beta	lysosomal-associated protein transmembrane 4B	protein-coding	3.228	1.189	0.414	1.285	1.371	0.641	1.489	1.781	1.185	1.295	1.113	0.689	1.839	3.922	2.585	2.490	2.442	2.079	0.473	0.440	0.178	nan	0.345	0.205	2.044
14851	chr9	9198394	9200695	+	0	NA	intron (NM_027823, intron 1 of 22)	intron (NM_027823, intron 1 of 22)	-36744	NR_045754	100579151	Mm.412450	NR_045754	ENSMUSG00000085253	Gm16833	-	predicted gene, 16833	ncRNA	2.095	nan	0.594	1.793	0.791	0.052	1.284	1.858	1.609	1.236	5.282	2.827	1.313	1.686	1.063	1.469	nan	nan	nan	0.563	0.210	0.792	0.144	0.175	nan
12165	chr6	38089450	38098441	+	0	NA	exon (NM_080467, exon 2 of 21)	exon (NM_080467, exon 2 of 21)	-15408	NM_029921	77522	Mm.387207	NM_029921	ENSMUSG00000029829	Tmem213	D630002J15Rik	transmembrane protein 213	protein-coding	4.814	0.653	0.406	2.146	1.054	0.501	8.224	7.483	3.590	4.509	0.953	0.776	8.543	9.183	7.949	8.584	7.016	nan	nan	0.906	0.672	nan	nan	0.870	4.511
12072	chr6	17413214	17416718	+	0	NA	Intergenic	Lx5|LINE|L1	-48991	NM_008591	17295	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	5.905	nan	0.315	5.223	2.563	1.336	6.562	9.091	4.974	6.605	7.902	3.054	8.429	6.957	9.295	13.453	9.458	8.133	1.053	0.972	0.455	1.908	1.380	1.167	9.427
11640	chr5	118823692	118829276	+	0	NA	Intergenic	Intergenic	-125855	NR_040694	74627	Mm.410828	NR_040694	ENSMUSG00000107144	4930413E15Rik	-	RIKEN cDNA 4930413E15 gene	ncRNA	6.263	3.345	2.489	4.738	4.386	3.104	7.455	4.933	6.097	8.887	3.896	1.852	7.289	5.050	3.703	6.523	5.289	4.977	nan	nan	1.286	0.521	nan	0.484	5.160
1257	chr10	42580212	42582893	+	0	NA	intron (NM_152229, intron 1 of 8)	intron (NM_152229, intron 1 of 8)	2036	NM_152229	21907	Mm.287100	NM_152229	ENSMUSG00000019803	Nr2e1	Mtl1|Mtll|TLL|Tlx|XTLL|fierce|frc|tailless	nuclear receptor subfamily 2, group E, member 1	protein-coding	3.182	5.488	2.353	3.283	1.646	0.869	0.546	3.321	3.048	3.292	1.453	0.974	1.871	1.941	2.939	4.028	3.905	3.874	8.921	5.286	2.046	8.682	7.586	3.962	2.309
8627	chr2	125624182	125631345	+	0	NA	3' UTR (NM_199022, exon 12 of 12)	3' UTR (NM_199022, exon 12 of 12)	-2650	NM_001081091	99100	Mm.330545	NM_001081091	ENSMUSG00000068394	Cep152	AI851464|mKIAA0912	centrosomal protein 152	protein-coding	7.647	0.625	0.618	4.044	4.123	3.224	7.011	9.114	6.957	9.663	2.003	1.151	8.292	9.323	6.641	nan	11.367	6.475	nan	1.073	1.016	0.903	0.998	0.932	8.167
31	chr1	16100157	16104420	+	0	NA	intron (NM_011291, intron 5 of 6)	intron (NM_011291, intron 5 of 6)	2145	NM_011291	19989	Mm.319659	NM_011291	ENSMUSG00000043716	Rpl7	Rpl7a|Surf-3	ribosomal protein L7	protein-coding	3.356	0.857	0.467	2.196	2.247	1.227	2.304	2.455	3.077	3.124	3.412	2.104	4.560	3.850	3.190	6.785	3.778	3.837	0.970	1.108	0.443	0.992	0.858	0.406	2.539
8000	chr2	22660685	22667058	+	0	NA	intron (NM_008078, intron 8 of 15)	RCHARR1|DNA|hAT-Charlie	9588	NR_039548	100628608		NR_039548	ENSMUSG00000106199	Mir3967	mmu-mir-3967|mu-mir-3967	microRNA 3967	ncRNA	3.530	7.203	3.328	2.429	1.343	0.811	0.846	1.022	1.893	2.051	1.492	0.864	1.002	1.397	1.377	1.716	1.497	1.954	0.810	1.092	1.044	0.582	0.377	0.246	1.405
10074	chr4	48271495	48278660	+	0	NA	intron (NM_029572, intron 1 of 11)	Lx2A1|LINE|L1	4512	NM_029572	76299	Mm.317701	NM_029572	ENSMUSG00000028343	Erp44	1110001E24Rik|AI849526|AL033348|Txndc4	endoplasmic reticulum protein 44	protein-coding	0.692	6.638	4.466	0.521	0.285	0.259	0.387	0.719	0.918	0.650	0.588	0.842	0.363	0.544	0.431	0.718	0.588	nan	1.060	0.575	0.215	nan	0.644	0.429	0.376
4717	chr14	58348638	58349923	+	0	NA	Intergenic	Intergenic	276594	NM_013518	14180	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	5.734	15.540	3.369	10.164	2.146	0.728	5.401	6.315	4.958	5.008	3.379	1.812	4.697	6.109	9.109	10.216	3.426	7.662	2.574	1.506	0.760	1.822	2.771	1.513	10.530
10318	chr4	101341446	101342862	+	0	NA	Intergenic	Intergenic	4873	NR_029537	387143		NR_029537	ENSMUSG00000065451	Mir101a	Mirn101|Mirn101a|miR-101|mir-101a	microRNA 101a	ncRNA	3.688	1.182	0.601	3.570	1.820	1.940	2.515	2.620	2.712	1.768	0.846	1.207	1.683	2.637	2.333	3.210	1.308	2.664	1.415	1.334	1.080	2.734	0.968	0.503	3.307
4093	chr13	48403664	48405875	+	0	NA	Intergenic	Intergenic	108641	NM_001164575	67911	Mm.251375	NM_026450	ENSMUSG00000050954	Zfp169	1700025J14Rik|4930429A13Rik|BE688704	zinc finger protein 169	protein-coding	nan	0.465	0.593	nan	0.087	0.221	0.307	0.160	0.268	0.572	0.588	0.282	0.175	0.251	0.306	0.460	0.525	nan	4.459	nan	4.832	2.466	7.472	6.325	nan
14548	chr8	108460510	108462803	+	0	NA	Intergenic	Intergenic	123021	NR_077224	109215	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	10.603	15.212	4.426	9.173	3.043	2.225	7.243	8.752	5.730	6.940	6.719	3.212	7.236	8.836	9.239	12.382	8.191	8.026	4.613	4.895	3.044	nan	5.297	2.645	14.334
8608	chr2	121971335	121976509	+	0	NA	intron (NM_001290992, intron 2 of 12)	B1_Mm|SINE|Alu	-17830	NM_008545	17147	Mm.389349	NM_008545	ENSMUSG00000074881	Mageb3	Mage-b3|Mage-ps1|Mage-rs3|Smage3	melanoma antigen, family B, 3	protein-coding	7.949	15.275	8.280	9.736	6.301	4.379	3.511	5.205	5.295	5.438	2.861	2.332	5.051	4.905	5.509	8.476	5.495	6.073	7.858	4.630	3.713	5.301	3.161	2.538	nan
13676	chr7	124613493	124614666	+	0	NA	Intergenic	L1Md_A|LINE|L1	94856	NR_045907	73076	Mm.417827	NR_045907	ENSMUSG00000086254	3100003L05Rik	-	RIKEN cDNA 3100003L05 gene	ncRNA	4.594	5.174	3.208	3.140	3.042	1.402	3.056	1.001	2.187	3.144	1.509	0.985	1.396	4.025	nan	2.451	1.396	2.051	1.329	1.570	0.940	1.058	0.480	0.967	2.996
7513	chr19	7024995	7029087	+	0	NA	intron (NM_016737, intron 8 of 13)	B1_Mm|SINE|Alu	-7572	NM_153795	108101	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	12.933	8.520	2.705	14.492	5.432	2.221	13.367	13.048	8.956	11.356	8.028	5.068	10.859	14.454	12.704	13.774	11.086	14.135	2.782	2.721	2.010	6.320	2.781	2.011	21.769
4439	chr13	117777105	117778699	+	0	NA	intron (NM_010408, intron 2 of 7)	ORR1D1-int|LTR|ERVL-MaLR	-57891	NR_045508	71100	Mm.414841	NR_045508	ENSMUSG00000079048	4933413L06Rik	-	RIKEN cDNA 4933413L06 gene	ncRNA	3.125	1.388	1.124	2.421	3.588	1.704	1.273	0.846	4.160	4.998	1.060	0.525	2.831	3.185	2.724	5.186	2.227	3.642	0.275	1.365	0.648	0.454	0.999	0.357	4.763
4160	chr13	55050091	55052692	+	0	NA	intron (NR_121592, intron 8 of 13)	MTC|LTR|ERVL-MaLR	-30006	NM_001033245	212032	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	nan	1.453	0.285	1.069	0.257	0.189	0.192	0.301	0.076	0.487	0.100	0.076	0.050	nan	0.136	nan	0.053	nan	4.358	1.658	2.385	3.556	4.248	5.071	nan
7647	chr19	24081357	24084655	+	0	NA	Intergenic	URR1A|DNA|hAT-Charlie	-51987	NM_001114174	381217	Mm.426078	NM_001114174	ENSMUSG00000071604	Fam189a2	AI414343|AI666772|Gm967	family with sequence similarity 189, member A2	protein-coding	2.570	0.859	0.553	2.803	2.833	1.505	5.260	6.079	2.452	2.458	nan	0.611	2.651	5.908	3.057	4.276	4.937	2.941	nan	1.246	0.764	2.595	nan	0.711	3.511
3336	chr12	56117658	56120063	+	0	NA	Intergenic	Intergenic	-134383	NR_045048	100503961	Mm.136732	NR_045048		Gm19990	-	predicted gene, 19990	ncRNA	1.219	11.186	7.810	1.144	0.716	0.346	0.485	0.727	1.420	0.947	2.112	1.621	0.436	0.544	nan	nan	1.278	0.959	1.083	0.909	1.196	1.018	0.422	0.587	1.125
4629	chr14	46358470	46360429	+	0	NA	Intergenic	ORR1A2|LTR|ERVL-MaLR	-20075	NR_037981	100041724	Mm.383311	NM_001099324	ENSMUSG00000079261	Gm15217	OTTMUSG00000019524	predicted gene 15217	ncRNA	4.748	0.429	0.268	2.255	2.508	1.388	1.411	3.905	1.644	2.983	1.886	0.542	3.354	5.971	3.223	4.742	3.995	2.785	0.388	0.931	0.415	0.441	0.454	0.240	4.988
10301	chr4	98808073	98809260	+	0	NA	intron (NM_172872, intron 1 of 9)	intron (NM_172872, intron 1 of 9)	8871	NM_172872	242553	Mm.440211	NM_172872	ENSMUSG00000035407	Kank4	AU021071|Ankrd38|BC060737|C130031J23	KN motif and ankyrin repeat domains 4	protein-coding	2.808	nan	0.373	1.147	0.881	1.219	4.674	3.190	2.505	2.119	2.509	1.080	3.729	3.853	nan	3.650	3.380	2.338	0.515	0.447	0.619	nan	0.866	0.885	3.029
5104	chr15	34389986	34392309	+	0	NA	intron (NM_016762, intron 6 of 18)	intron (NM_016762, intron 6 of 18)	-33275	NM_001256161	77358	Mm.402759	NM_001256161	ENSMUSG00000094447	9430069I07Rik	-	RIKEN cDNA 9430069I07 gene	protein-coding	1.920	0.719	0.450	0.338	0.520	0.158	2.010	4.499	0.759	0.431	0.316	0.572	1.044	0.803	2.163	0.900	2.241	0.717	1.323	1.303	0.607	nan	5.893	3.059	nan
968	chr1	183789728	183792194	+	0	NA	Intergenic	Intergenic	243037	NM_028516	73363	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	10.081	7.830	6.987	5.277	7.550	7.238	8.150	8.451	4.658	4.114	4.647	4.689	7.546	7.338	4.894	7.966	7.174	4.826	2.922	3.956	4.999	2.174	3.961	5.275	3.995
14170	chr8	37782519	37798530	+	0	NA	intron (NM_145841, intron 2 of 7)	L1_Mur3|LINE|L1	461678	NR_029884	723860		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA	4.275	0.487	0.355	3.867	2.657	1.560	2.639	2.411	3.260	4.425	1.454	0.762	7.481	5.434	3.388	5.322	4.289	4.302	0.538	0.702	0.401	0.499	0.357	0.249	nan
675	chr1	137177423	137180975	+	0	NA	Intergenic	Intergenic	-218751	NM_030676	26424	Mm.16794	NM_030676	ENSMUSG00000026398	Nr5a2	AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B	nuclear receptor subfamily 5, group A, member 2	protein-coding	9.567	8.866	3.385	10.348	4.204	2.999	4.917	5.963	5.468	9.400	5.467	3.242	7.338	6.989	7.539	9.983	5.334	8.297	3.485	2.526	2.492	5.078	2.259	2.256	11.339
7300	chr18	61790712	61800933	+	0	NA	Intergenic	Intergenic	-9160	NM_178928	106877	Mm.26632	NM_178928	ENSMUSG00000033032	Afap1l1	AI173486	actin filament associated protein 1-like 1	protein-coding	6.749	nan	0.990	6.967	4.306	2.937	6.351	nan	4.266	4.572	8.830	5.485	nan	6.678	4.895	4.730	3.552	5.592	nan	2.479	1.981	nan	2.556	2.179	4.253
8807	chr2	152051948	152053609	+	0	NA	Intergenic	Intergenic	-28751	NM_001160410	545474	Mm.214317	NM_001160410	ENSMUSG00000060257	Scrt2	AW060659	scratch family zinc finger 2	protein-coding	14.807	15.293	6.324	12.645	7.752	5.136	11.696	14.061	5.803	14.835	8.188	5.414	9.846	12.507	10.902	13.476	11.015	9.563	7.200	6.368	5.472	6.765	6.899	7.765	17.550
11554	chr5	110907254	110909039	+	0	NA	intron (NM_001267622, intron 2 of 22)	Lx6|LINE|L1	28343	NM_001267622	209683	Mm.295660	NM_024477	ENSMUSG00000033209	Ttc28	2310015L07Rik|6030435N04|AI428795|AI851761|BC002262|TPRBK	tetratricopeptide repeat domain 28	protein-coding	3.149	0.572	1.094	1.928	3.245	3.613	7.189	3.139	2.511	2.610	0.772	0.568	3.916	5.357	4.799	4.228	4.771	2.516	nan	1.340	1.664	1.457	1.119	1.542	3.710
382	chr1	87855473	87857488	+	0	NA	intron (NM_177646, intron 1 of 29)	ID_B1|SINE|B4	-2181	NR_136921	100503175	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	6.667	6.074	1.771	1.843	0.662	0.426	3.492	8.522	1.782	1.886	0.907	1.076	2.612	3.087	3.910	4.725	3.282	2.292	0.704	1.433	0.899	nan	0.649	0.334	3.830
3541	chr12	82850965	82852495	+	0	NA	intron (NM_001310478, intron 2 of 17)	intron (NM_001310478, intron 2 of 17)	87425	NR_046045	74283	Mm.398247	NR_046045	ENSMUSG00000100890	1700085C21Rik	-	RIKEN cDNA 1700085C21 gene	ncRNA	2.756	15.435	6.706	3.130	2.204	1.407	1.050	1.272	2.239	1.955	3.234	1.535	1.217	nan	1.991	1.797	1.563	2.155	6.060	4.413	3.879	5.381	4.659	5.299	2.307
10955	chr4	151471605	151473101	+	0	NA	intron (NM_001081557, intron 4 of 23)	intron (NM_001081557, intron 4 of 23)	382783	NM_001308446	105704528	Mm.415128	NM_001308446	ENSMUSG00000078491	Gm13090	OTTMUSG00000010356	predicted gene 13090	protein-coding	4.697	nan	0.594	3.456	2.464	1.057	5.412	4.780	3.593	3.134	1.020	1.212	3.050	4.744	4.841	7.073	3.689	4.324	4.026	0.721	1.124	5.153	1.016	1.277	8.059
2846	chr11	103019770	103020900	+	0	NA	Intergenic	Intergenic	-3188	NM_026551	68087	Mm.277449	NM_026551	ENSMUSG00000020935	Dcakd	3010024O21Rik|6720485C15Rik|AI849483	dephospho-CoA kinase domain containing	protein-coding	5.521	3.234	2.044	5.392	3.183	1.705	3.786	4.579	nan	3.508	2.984	2.336	4.221	5.592	4.558	5.567	4.893	4.345	2.105	2.023	3.763	2.540	2.725	3.699	6.431
4208	chr13	62957773	62961483	+	0	NA	Intergenic	B4A|SINE|B4	-5265	NM_001289926	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	nan	0.856	0.386	1.861	2.742	1.011	2.244	5.530	4.661	6.498	1.666	2.381	4.993	3.780	2.897	7.282	4.297	nan	0.922	0.562	0.524	2.491	0.274	0.259	7.869
13653	chr7	121214415	121216754	+	0	NA	Intergenic	Intergenic	132146	NM_139310	246190	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	4.731	2.410	1.134	2.951	2.816	1.021	5.719	10.429	2.442	2.522	5.728	3.302	5.994	7.655	6.200	4.957	5.579	4.215	4.287	2.212	1.441	3.609	3.282	2.129	5.145
7019	chr18	11022688	11026238	+	0	NA	Intergenic	PB1D11|SINE|Alu	-28047	NM_010258	14465	Mm.329287	NM_010258	ENSMUSG00000005836	Gata6	AA410133|GATA-6	GATA binding protein 6	protein-coding	2.293	0.625	0.392	1.237	1.549	0.741	3.013	2.837	2.026	2.171	0.464	0.440	4.141	4.269	4.055	4.805	3.815	3.465	0.654	0.609	0.423	0.377	0.476	0.338	3.943
14064	chr8	23146188	23150363	+	0	NA	intron (NM_001282148, intron 1 of 5)	intron (NM_001282148, intron 1 of 5)	1310	NM_001282148	101056408	Mm.475778	NM_001282148		Gm15816	OTTMUSG00000026380	predicted gene 15816	protein-coding	8.035	nan	0.345	6.985	2.188	1.099	7.229	11.888	8.978	11.429	1.782	1.873	13.527	13.146	10.180	14.953	11.626	10.665	1.794	0.937	0.641	nan	3.092	1.865	11.373
11712	chr5	124616938	124618531	+	0	NA	intron (NM_026486, intron 11 of 18)	PB1D10|SINE|Alu	-11318	NM_011596	21871	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	2.842	0.983	0.572	3.493	2.128	1.299	6.300	2.059	2.426	2.902	1.196	0.796	3.700	4.856	6.264	5.785	2.953	4.144	2.335	2.604	1.478	7.624	3.331	2.485	8.144
139	chr1	40336062	40337451	+	0	NA	intron (NM_133193, intron 4 of 10)	L1_Mus3|LINE|L1	12129	NM_133193	107527	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	5.091	1.007	0.533	1.904	1.931	0.952	5.133	4.911	2.926	2.278	7.842	2.427	5.636	3.898	5.422	9.815	4.851	5.205	0.794	0.679	0.303	0.576	0.508	0.184	5.412
3863	chr13	20222778	20228398	+	0	NA	intron (NM_080288, intron 4 of 21)	intron (NM_080288, intron 4 of 21)	135081	NM_080288	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	5.125	6.700	5.340	2.240	0.915	0.615	3.713	4.613	2.856	2.125	1.048	1.445	3.588	nan	4.336	4.238	nan	3.994	1.691	1.589	1.285	1.398	1.530	1.366	nan
13014	chr7	26002055	26007416	+	0	NA	Intergenic	Intergenic	-56760	NM_007813	13089	Mm.482696	NM_007813	ENSMUSG00000040583	Cyp2b13	-	cytochrome P450, family 2, subfamily b, polypeptide 13	protein-coding	7.927	7.546	2.868	8.376	7.185	3.350	7.872	12.551	4.754	7.496	6.253	3.290	7.444	10.982	8.748	9.705	7.041	7.379	4.661	3.034	2.838	4.968	4.389	2.894	10.863
9748	chr3	121334567	121340449	+	0	NA	intron (NM_024178, intron 3 of 3)	ORR1B2|LTR|ERVL-MaLR	45691	NM_024178	66789	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	3.041	0.748	0.356	3.704	5.317	3.179	2.755	4.465	5.106	5.581	4.220	3.337	4.996	6.585	3.415	nan	2.073	5.884	2.047	1.194	0.929	1.865	nan	1.112	nan
11382	chr5	86492849	86496233	+	0	NA	intron (NM_177162, intron 5 of 9)	intron (NM_177162, intron 5 of 9)	24059	NM_177162	320454	Mm.184522	NM_177162	ENSMUSG00000079451	Tmprss11g	9930032O22Rik|Desc4	transmembrane protease, serine 11g	protein-coding	4.070	5.929	3.365	3.438	2.130	1.494	3.377	3.762	2.949	3.013	2.616	2.631	2.753	3.965	4.849	4.980	4.106	3.559	4.260	2.159	1.485	4.057	3.063	2.944	3.350
10775	chr4	138354894	138366004	+	0	NA	intron (NM_028176, intron 1 of 3)	B2_Mm2|SINE|B2	7506	NM_028176	72269	Mm.46182	NM_028176	ENSMUSG00000028755	Cda	2210401N16Rik	cytidine deaminase	protein-coding	nan	0.649	0.261	0.478	0.108	0.100	0.426	0.490	nan	0.327	0.257	0.245	0.310	0.324	0.343	0.690	0.290	nan	4.042	2.201	1.313	7.850	nan	1.368	0.777
3008	chr11	116493423	116495433	+	0	NA	Intergenic	PB1D9|SINE|Alu	-4082	NM_026364	67763	Mm.25125	NM_026364	ENSMUSG00000015869	Prpsap1	5730409F23Rik|PAP39	phosphoribosyl pyrophosphate synthetase-associated protein 1	protein-coding	2.280	nan	0.536	2.651	3.192	2.941	6.325	nan	2.637	nan	3.743	2.122	3.003	6.221	5.121	3.284	3.811	nan	0.472	nan	0.902	0.789	0.347	0.259	1.992
1246	chr10	41859110	41861472	+	0	NA	intron (NM_001162908, intron 1 of 9)	intron (NM_001162908, intron 1 of 9)	-27148	NM_001013370	140742	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	3.635	0.774	0.484	2.693	4.016	2.123	1.741	1.935	3.450	3.824	1.431	1.390	2.008	4.698	1.899	2.369	2.092	3.847	0.513	0.789	0.596	0.623	0.638	0.831	2.984
4377	chr13	108165576	108166966	+	0	NA	intron (NM_028042, intron 2 of 11)	intron (NM_028042, intron 2 of 11)	7533	NM_028042	71991	Mm.212208	NM_028042	ENSMUSG00000021694	Ercc8	2410022P04Rik|2810431L23Rik|4631412O06Rik|B130065P18Rik|Ckn1|Csa	excision repaiross-complementing rodent repair deficiency, complementation group 8	protein-coding	nan	nan	0.091	1.482	1.436	0.177	0.526	1.645	1.977	1.538	0.267	0.418	1.058	3.330	2.426	1.862	0.490	2.821	1.463	0.513	0.344	1.359	0.765	0.457	1.112
7725	chr19	34643392	34645897	+	0	NA	intron (NM_008331, intron 1 of 1)	intron (NM_008331, intron 1 of 1)	3755	NM_008331	15957	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	4.560	2.405	2.034	2.640	2.795	1.709	3.807	2.329	2.772	3.115	2.382	0.510	3.648	3.160	3.200	4.352	4.664	4.779	0.794	1.518	0.812	1.111	1.311	0.725	5.167
7958	chr2	9842868	9843976	+	0	NA	Intergenic	Intergenic	35178	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	2.062	0.478	0.275	0.413	1.363	0.491	3.786	7.180	1.267	1.149	0.333	0.307	1.911	3.818	3.678	3.612	4.192	1.755	0.351	0.148	0.081	0.176	0.410	0.213	3.376
1293	chr10	53759436	53760874	+	0	NA	Intergenic	Intergenic	-9246	NM_001081428	75906	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	5.575	11.369	3.432	4.452	3.885	1.022	3.393	3.142	5.361	7.489	3.482	2.642	3.421	4.778	5.896	6.646	4.637	5.286	1.917	1.157	0.943	2.274	1.439	0.652	5.492
4000	chr13	38401791	38404820	+	0	NA	intron (NM_007556, intron 1 of 6)	intron (NM_007556, intron 1 of 6)	57589	NM_007556	12161	Mm.385759	NM_007556	ENSMUSG00000039004	Bmp6	D13Wsu115e|Vgr1	bone morphogenetic protein 6	protein-coding	6.093	nan	0.339	2.302	5.837	3.366	nan	7.370	4.350	4.918	8.570	4.081	3.963	6.391	4.007	nan	2.261	nan	2.454	1.372	1.215	2.252	2.637	1.486	nan
12883	chr6	148338274	148340863	+	0	NA	intron (NM_001347518, intron 5 of 18)	Lx3_Mus|LINE|L1	-15088	NR_003634	66184	Mm.391542	NM_025405	ENSMUSG00000063171	Rps4l	1110033J19Rik|AA407494|Rps4y2	ribosomal protein S4-like	pseudo	4.102	1.086	0.531	4.925	1.334	0.770	1.150	nan	2.579	nan	1.001	0.642	nan	1.948	1.653	nan	1.356	3.641	1.672	nan	1.103	nan	1.180	0.715	nan
10804	chr4	140502192	140504072	+	0	NA	Intergenic	Intergenic	145624	NM_001112723	72754	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	3.903	9.698	4.328	2.663	2.701	1.174	3.395	2.884	nan	2.593	3.054	2.570	2.917	3.477	2.471	1.853	1.611	nan	1.319	0.552	1.051	1.463	nan	0.969	3.786
8991	chr2	165732363	165733956	+	0	NA	intron (NM_001271962, intron 9 of 15)	intron (NM_001271962, intron 9 of 15)	77861	NM_010165	14049	Mm.282719	NM_010165	ENSMUSG00000017897	Eya2	Eab1	EYA transcriptional coactivator and phosphatase 2	protein-coding	1.713	1.416	0.817	2.057	2.855	1.525	1.742	1.848	1.064	0.877	1.109	0.877	0.848	nan	0.791	1.052	1.443	nan	4.202	4.057	4.785	2.306	5.551	8.033	nan
8818	chr2	152598139	152601102	+	0	NA	Intergenic	Intergenic	-3135	NM_001037752	433490	Mm.23779	NM_001037752	ENSMUSG00000062124	Defb45	Defb27|OTTMUSG00000015859	defensin beta 45	protein-coding	3.219	1.230	0.583	2.845	3.881	4.329	3.733	4.688	3.748	3.363	1.412	0.927	4.391	5.109	3.125	4.620	4.495	4.197	nan	0.696	0.808	0.799	0.637	0.858	4.196
15305	chr9	75078936	75087508	+	0	NA	intron (NM_010864, intron 1 of 40)	intron (NM_010864, intron 1 of 40)	12016	NM_010864	17918	Mm.3645	NM_010864	ENSMUSG00000034593	Myo5a	9630007J19Rik|AI413174|AI661011|Dbv|MVa|Myo5|MyoVA|Sev-1|d|d-120J|flail|flr	myosin VA	protein-coding	8.591	0.553	0.350	6.084	4.694	2.424	6.216	7.754	6.703	9.537	4.224	3.427	7.362	10.154	9.104	10.296	6.194	9.753	0.654	nan	0.545	0.615	0.519	0.412	13.319
11630	chr5	117779990	117781201	+	0	NA	Intergenic	MIRb|SINE|MIR	-86244	NM_008712	18125	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	3.650	0.448	0.885	1.807	4.509	4.486	3.707	3.691	3.741	2.247	4.759	3.966	2.727	3.953	3.737	3.535	3.145	3.920	nan	nan	0.894	1.256	nan	0.706	2.809
13315	chr7	80696493	80705436	+	0	NA	Intergenic	Intergenic	-12087	NM_173863	70461	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	9.641	10.864	4.443	9.905	6.899	3.708	7.697	9.730	8.238	11.462	8.452	5.570	10.042	10.522	8.782	nan	7.638	11.806	8.824	3.098	2.276	5.279	3.909	3.519	nan
4789	chr14	66518734	66521703	+	0	NA	Intergenic	Intergenic	-115033	NM_001271759	11549	Mm.57064	NM_013461	ENSMUSG00000045875	Adra1a	Adra1c	adrenergic receptor, alpha 1a	protein-coding	3.591	1.317	0.807	1.476	4.377	2.811	6.697	8.773	3.451	3.260	4.143	5.114	3.317	3.923	4.622	3.606	2.868	2.876	1.420	nan	1.342	1.457	2.049	1.738	4.080
1518	chr10	80779526	80784684	+	0	NA	intron (NM_199322, intron 11 of 27)	intron (NM_199322, intron 11 of 27)	16521	NM_023900	78670	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	6.337	6.064	2.100	6.057	3.156	1.688	4.553	6.156	3.164	6.524	3.769	2.304	4.288	7.431	5.797	6.319	4.734	5.324	nan	2.280	1.997	3.829	2.901	2.495	9.054
178	chr1	53838970	53842638	+	0	NA	exon (NM_001001883, exon 22 of 29)	exon (NM_001001883, exon 22 of 29)	-8620	NR_106149	102465783		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	9.657	11.050	3.250	7.641	3.839	2.620	4.538	4.867	5.939	8.422	3.769	2.939	5.842	5.838	7.154	8.091	4.828	7.260	2.709	2.104	1.412	2.375	2.222	2.068	7.939
3444	chr12	76953170	76956229	+	0	NA	intron (NM_001146176, intron 1 of 3)	intron (NM_001146176, intron 1 of 3)	7549	NM_008558	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	5.684	1.718	0.858	4.075	3.849	1.464	3.294	3.249	4.314	3.595	1.790	2.007	6.020	5.763	4.654	nan	5.314	5.180	2.307	1.962	1.223	3.099	1.695	0.948	5.171
11788	chr5	135456624	135470199	+	0	NA	intron (NM_146001, intron 1 of 30)	intron (NM_146001, intron 1 of 30)	-68865	NM_148932	107939	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	7.329	0.557	0.576	6.312	9.084	7.422	11.834	8.010	5.952	8.923	5.420	4.065	7.629	11.739	9.215	9.577	8.335	7.847	5.403	3.482	4.363	4.918	nan	6.835	10.656
11965	chr5	148680724	148686722	+	0	NA	Intergenic	Intergenic	-58117	NR_028285	70138	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	3.833	0.986	0.538	nan	0.942	0.507	5.444	4.320	nan	1.307	2.314	1.130	3.757	2.682	3.481	3.765	4.141	2.842	0.981	0.659	0.448	0.563	0.587	0.419	3.675
10112	chr4	57165066	57170649	+	0	NA	Intergenic	Intergenic	-4214	NR_040669	329851	Mm.392470	NR_040669	ENSMUSG00000085967	Gm12530	D730003B17|OTTMUSG00000007337	predicted gene 12530	ncRNA	6.619	nan	0.413	4.625	5.721	3.380	7.835	7.540	5.765	6.672	6.673	4.245	7.580	10.275	7.128	7.778	5.804	7.404	nan	2.664	1.916	5.893	1.566	1.475	9.403
6267	chr16	96182790	96184754	+	0	NA	intron (NM_001001492, intron 2 of 10)	L1M4|LINE|L1	8485	NM_001001492	385668	Mm.24626	NM_001001492	ENSMUSG00000045275	Lca5l	4921526F01Rik|Lcca5l	Leber congenital amaurosis 5-like	protein-coding	2.172	0.712	0.221	1.001	1.027	0.517	3.945	3.215	nan	1.540	2.031	0.674	3.447	3.987	4.329	3.884	2.015	3.322	nan	0.488	0.438	0.603	0.966	0.709	1.325
10771	chr4	138277089	138295955	+	0	NA	exon (NM_010623, exon 7 of 15)	exon (NM_010623, exon 7 of 15)	-18216	NM_007838	13200	Mm.7236	NM_007838	ENSMUSG00000028757	Ddost	-	dolichyl-di-phosphooligosaccharide-protein glycotransferase	protein-coding	nan	0.504	0.222	1.153	0.553	0.259	1.822	2.528	nan	1.650	1.164	0.896	2.683	1.676	2.260	2.881	1.461	nan	8.046	3.729	2.576	9.815	nan	4.277	1.881
9807	chr3	132590854	132592942	+	0	NA	Intergenic	Intergenic	-38293	NM_001270430	433653		NM_001270430	ENSMUSG00000091721	Gimd1	EG433653|Gm5549	GIMAP family P-loop NTPase domain containing 1	protein-coding	5.067	0.648	0.508	4.195	3.521	1.618	2.046	1.559	2.828	4.222	1.517	0.769	1.897	4.498	2.270	2.409	1.494	4.590	2.083	0.790	0.370	1.906	1.368	0.956	3.662
1974	chr11	11613855	11621070	+	0	NA	intron (NM_001305143, intron 2 of 3)	L1Md_A|LINE|L1	10376	NM_001305143	102631730	Mm.159430	NM_001305143	ENSMUSG00000062511	4930512M02Rik	-	RIKEN cDNA 4930512M02 gene	protein-coding	nan	9.889	4.543	1.184	0.515	0.220	0.304	0.389	0.642	0.581	0.441	0.224	0.215	0.303	0.464	0.875	0.604	0.857	0.626	nan	0.663	0.849	0.373	0.319	0.726
5702	chr15	101522780	101528938	+	0	NA	exon (NM_008474, exon 9 of 9)	exon (NM_008474, exon 9 of 9)	6961	NM_008474	16680	Mm.25292	NM_008474	ENSMUSG00000044294	Krt84	AV235125|HRb-1|Krt2-16|Krt2-3	keratin 84	protein-coding	1.408	0.419	0.282	0.370	0.693	0.342	1.471	2.818	0.763	0.791	6.553	1.639	1.281	1.156	1.839	nan	1.212	1.115	0.780	0.601	0.409	0.513	0.693	0.537	1.157
15100	chr9	56362464	56364976	+	0	NA	intron (NM_172924, intron 2 of 6)	intron (NM_172924, intron 2 of 6)	54330	NM_172924	244895	Mm.490331	NM_172924	ENSMUSG00000074305	Peak1	1110049L02Rik|9530046P14|AA690169|BE132841|C230081A13Rik|SGK269|mKIAA2002	pseudopodium-enriched atypical kinase 1	protein-coding	2.275	1.341	0.836	2.035	0.829	0.733	1.655	nan	2.467	1.695	6.189	3.880	1.053	1.826	1.623	2.077	1.609	2.434	0.988	1.363	0.760	0.881	0.684	0.770	2.630
8394	chr2	79389793	79391557	+	0	NA	intron (NM_001048176, intron 2 of 12)	intron (NM_001048176, intron 2 of 12)	38313	NM_001048176	228094	Mm.440704	NM_001033295	ENSMUSG00000075256	Cerkl	Gm1958|Rp26	ceramide kinase-like	protein-coding	nan	0.418	0.488	nan	0.054	0.142	0.480	0.816	1.098	0.756	4.953	1.886	0.494	0.323	nan	nan	0.633	0.585	0.858	0.362	0.278	0.368	0.878	0.377	nan
4350	chr13	102532788	102539389	+	0	NA	Intergenic	Lx|LINE|L1	-157470	NM_008533	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly78|RP105	CD180 antigen	protein-coding	7.530	6.186	1.833	9.331	3.098	1.772	5.019	6.968	4.744	9.328	6.364	3.252	6.157	7.788	7.426	8.536	4.432	8.008	3.172	1.624	1.961	3.165	1.982	1.968	10.685
14057	chr8	14991505	15007032	+	0	NA	intron (NM_172751, intron 28 of 28)	intron (NM_172751, intron 28 of 28)	-11757	NM_029116	74901	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	4.661	7.948	3.306	2.857	1.768	0.999	4.612	6.775	3.317	4.157	1.134	1.750	6.417	5.806	4.960	6.762	4.994	4.653	3.316	2.435	1.661	5.133	1.884	1.316	6.237
10150	chr4	62162716	62163864	+	0	NA	Intergenic	L1Md_T|LINE|L1	-12449	NM_001009550	381531	Mm.472122	NM_001009550	ENSMUSG00000066153	Mup21	Gm11208|Mup|Mup26|OTTMUSG00000000231|bM64F17.1|bM64F17.4	major urinary protein 21	protein-coding	20.964	14.399	6.167	14.101	5.407	4.575	10.972	15.607	11.288	16.326	12.283	7.171	8.755	12.272	10.296	16.992	16.253	23.452	6.941	9.814	7.351	11.261	14.856	12.859	25.042
1374	chr10	66997990	67001673	+	0	NA	Intergenic	B1_Mur2|SINE|Alu	-5244	NR_110511	102634101	Mm.445258	NR_110511		Gm31763	-	predicted gene, 31763	ncRNA	7.056	6.505	3.056	5.015	1.952	1.374	3.674	4.456	2.601	5.342	2.074	1.580	3.758	5.148	4.726	4.386	4.167	3.292	2.158	1.987	1.373	2.971	1.752	1.300	8.413
13883	chr7	148232299	148234868	+	0	NA	Intergenic	Intergenic	2918748	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	8.705	3.805	1.666	nan	4.532	2.028	3.893	6.715	nan	5.326	8.463	2.945	4.907	5.822	3.646	5.071	4.953	4.421	4.766	4.522	2.607	5.217	6.309	4.457	6.318
9263	chr3	41545672	41547516	+	0	NA	Intergenic	L1MD1|LINE|L1	-9140	NM_001130184	269424	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	5.282	5.607	2.560	6.547	1.561	1.346	5.325	4.513	nan	6.365	3.914	2.564	5.323	5.263	6.389	8.616	6.722	7.098	nan	1.975	0.950	5.730	2.994	2.673	7.702
2303	chr11	61932522	61934504	+	0	NA	Intergenic	RCHARR1|DNA|hAT-Charlie	-3256	NM_019921	56697	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	3.539	0.666	0.571	3.303	1.389	1.399	2.939	2.233	3.298	3.831	2.345	0.856	4.748	5.565	3.960	4.705	2.862	4.375	nan	0.935	0.509	0.605	0.934	0.366	3.741
2807	chr11	101137960	101140177	+	0	NA	Intergenic	Intergenic	-16816	NM_134028	103768	Mm.142348	NM_134028	ENSMUSG00000045007	Tubg2	AI504772|Tubgl	tubulin, gamma 2	protein-coding	9.119	3.875	0.820	6.599	4.341	1.856	10.570	8.842	5.695	6.443	7.814	3.675	10.093	12.889	12.129	12.242	7.194	8.612	2.677	nan	0.995	3.016	nan	nan	14.423
5672	chr15	100249544	100255952	+	0	NA	intron (NM_007497, intron 4 of 6)	tRNA-Ala-GCY_|tRNA|tRNA	24889	NM_007497	11908	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	4.037	4.177	1.419	4.304	2.730	1.873	6.565	8.074	2.856	4.281	1.725	1.829	6.475	6.936	6.046	nan	6.452	4.071	2.689	2.428	1.943	4.221	2.012	1.520	5.940
9651	chr3	104847065	104859383	+	0	NA	intron (NM_009797, intron 1 of 9)	intron (NM_009797, intron 1 of 9)	11281	NM_009797	12340	Mm.19142	NM_009797	ENSMUSG00000070372	Capza1	CAPZ|CAZ1|Cappa1	capping protein (actin filament) muscle Z-line, alpha 1	protein-coding	8.243	2.179	1.085	5.936	4.523	2.391	3.824	4.410	4.752	5.512	3.158	2.221	3.697	5.713	nan	4.873	3.592	7.202	1.622	1.654	1.361	1.382	1.802	1.267	5.664
716	chr1	140467140	140468966	+	0	NA	intron (NM_001081027, intron 13 of 27)	intron (NM_001081027, intron 13 of 27)	188349	NR_040604	75910	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA	2.077	2.002	0.969	2.138	1.076	0.827	1.996	3.974	3.340	2.161	6.028	3.224	2.063	2.901	2.310	2.491	1.075	2.730	0.992	0.400	0.401	2.216	0.777	0.574	nan
1972	chr11	11457839	11459328	+	0	NA	intron (NM_001185153, intron 2 of 7)	L1M4|LINE|L1	3836	NM_015785	53604	Mm.9500	NM_015785	ENSMUSG00000020193	Zpbp	4930486K01Rik|Iam38|Sp38	zona pellucida binding protein	protein-coding	2.760	13.479	5.749	2.103	1.123	0.540	0.861	1.441	1.573	2.099	1.388	0.711	0.990	3.225	1.434	1.586	1.284	1.754	0.738	nan	0.830	0.589	0.760	0.503	2.385
12510	chr6	97172259	97173832	+	0	NA	intron (NM_001081111, intron 3 of 16)	intron (NM_001081111, intron 3 of 16)	6079	NM_001081111	232286	Mm.30893	NM_001081111	ENSMUSG00000030059	Tmf1	7030402D04Rik|Gm153|Tmf1`	TATA element modulatory factor 1	protein-coding	4.045	4.188	2.466	2.035	4.214	1.876	2.605	1.396	2.225	2.191	1.473	1.360	4.042	4.021	1.799	2.111	1.739	2.015	nan	nan	1.512	0.913	1.392	1.193	1.882
9872	chr3	148773508	148776655	+	0	NA	Intergenic	Intergenic	179554	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	5.362	0.785	0.250	2.735	3.447	1.125	9.484	7.218	3.683	4.126	2.582	1.840	6.096	8.233	7.915	7.812	4.187	5.841	1.177	0.391	0.156	0.815	0.770	0.241	7.155
5294	chr15	73076022	73078015	+	0	NA	Intergenic	Intergenic	-13394	NM_053068	93696	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	6.463	nan	0.990	2.880	2.640	1.321	3.960	4.484	2.565	2.720	4.760	3.418	4.056	2.567	2.529	1.950	4.668	2.577	1.781	1.692	1.347	nan	1.192	0.763	1.926
11706	chr5	124312449	124315537	+	0	NA	intron (NR_102690, intron 5 of 22)	B1_Mur3|SINE|Alu	13979	NM_001081323	269702	Mm.60224	NM_001081323	ENSMUSG00000038126	Mphosph9	4930548D04Rik|9630025B04Rik|AW413446|AW547060|B930097C17Rik|C87456|MPP-9|MPP9	M-phase phosphoprotein 9	protein-coding	5.075	3.510	1.639	4.712	2.620	1.015	3.043	4.590	2.854	3.081	6.982	2.497	3.072	4.194	4.977	5.910	nan	4.397	nan	1.225	0.837	1.557	nan	1.226	5.200
13521	chr7	108513646	108516327	+	0	NA	Intergenic	RLTR26C_MM|LTR|ERVK	8962	NM_146739	258734	Mm.377664	NM_146739	ENSMUSG00000058014	Olfr502	MOR204-8	olfactory receptor 502	protein-coding	1.134	8.231	6.788	1.691	1.928	1.403	0.888	1.229	0.863	1.111	0.803	1.088	0.511	nan	0.935	nan	0.790	nan	nan	1.905	1.536	0.505	1.663	1.384	0.878
21	chr1	10243671	10248636	+	0	NA	Intergenic	Lx2|LINE|L1	-13483	NM_001102430	211673	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	7.158	1.255	0.599	2.066	3.438	2.359	5.874	7.189	3.356	3.421	4.770	3.556	7.598	8.049	4.222	5.990	4.653	4.050	0.914	0.960	0.653	0.612	1.408	1.143	2.678
4169	chr13	56061580	56064592	+	0	NA	Intergenic	Intergenic	72464	NM_012015	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	nan	0.419	0.392	0.418	0.334	0.165	0.267	0.426	0.445	0.466	7.287	0.383	0.349	nan	0.389	nan	0.490	nan	0.492	0.319	0.432	0.400	0.113	0.317	nan
5607	chr15	97209450	97212031	+	0	NA	Intergenic	Intergenic	-36367	NM_172293	239647	Mm.130036	NM_172293	ENSMUSG00000044250	Pced1b	Fam113b	PC-esterase domain containing 1B	protein-coding	6.502	6.617	3.596	2.460	2.517	1.669	5.983	7.681	1.633	2.385	1.339	0.882	8.129	6.226	4.404	4.735	5.476	5.440	1.444	1.650	1.077	2.141	1.293	0.537	4.739
523	chr1	121417330	121418612	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	-13096	NM_029955	70829	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	3.976	0.698	0.900	1.760	1.889	1.581	4.387	4.234	2.114	1.505	1.157	1.219	4.363	3.749	2.397	6.083	3.731	3.128	0.469	0.330	0.574	0.506	0.431	0.198	2.891
4862	chr14	76813917	76815652	+	0	NA	Intergenic	Intergenic	137216	NR_015485	73272	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	8.941	4.848	1.324	7.113	4.299	4.330	8.657	7.334	2.994	15.954	4.332	2.692	6.040	9.406	7.938	9.772	6.085	7.666	6.126	1.589	7.504	6.139	3.760	10.384	19.398
15419	chr9	99620000	99621879	+	0	NA	3' UTR (NM_001077424, exon 3 of 3)	3' UTR (NM_001077424, exon 3 of 3)	8437	NM_001077424	333424	Mm.297753	NM_001077424	ENSMUSG00000037953	A4gnt	AV080780|Alpha4gnt|Gm798	alpha-1,4-N-acetylglucosaminyltransferase	protein-coding	3.014	0.456	0.616	1.920	4.048	1.754	1.820	3.059	4.478	3.105	3.464	4.951	2.082	3.786	2.561	2.462	1.464	4.632	0.501	0.614	0.367	0.336	0.327	0.399	2.070
6344	chr17	13832280	13838503	+	0	NA	intron (NM_010806, intron 13 of 32)	intron (NM_010806, intron 13 of 32)	-73997	NM_022311	21646	Mm.486358	NM_022311	ENSMUSG00000038347	Tcte2	AI429268|Tcte-2	t-complex-associated testis expressed 2	protein-coding	6.861	1.021	0.591	7.701	7.011	5.517	8.375	5.572	5.893	5.746	3.041	1.736	6.529	7.661	7.410	8.745	7.116	8.136	1.231	1.178	1.404	1.958	0.994	1.124	nan
11649	chr5	120965979	120968315	+	0	NA	intron (NM_001302345, intron 4 of 20)	intron (NM_001302345, intron 4 of 20)	41337	NM_001302345	19894	Mm.181166	NM_011286	ENSMUSG00000029608	Rph3a	2900002P20Rik|AU022689|AW108370	rabphilin 3A	protein-coding	3.796	4.349	1.091	4.756	3.109	1.696	2.299	4.062	2.385	3.210	7.525	2.273	1.349	3.765	2.856	2.489	1.033	3.047	nan	nan	0.817	1.035	nan	0.544	3.331
10047	chr4	46051180	46052845	+	0	NA	intron (NM_021883, intron 1 of 9)	B3A|SINE|B2	12790	NM_021883	21916	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	3.324	nan	0.317	7.665	1.627	0.912	1.491	1.532	3.165	5.285	0.664	0.610	2.940	4.443	3.976	5.872	1.866	7.675	2.452	0.896	0.957	3.383	0.725	0.886	10.360
10329	chr4	102784886	102787824	+	0	NA	intron (NM_001285852, intron 1 of 25)	MER5A1|DNA|hAT-Charlie	26220	NM_001285859	73094	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	6.568	7.044	2.471	7.667	3.332	2.310	5.563	4.571	4.328	nan	4.098	2.523	5.807	6.326	7.359	8.282	4.968	6.436	3.544	2.659	4.274	5.481	2.931	3.627	12.047
453	chr1	93144086	93147705	+	0	NA	TTS (NM_016702)	TTS (NM_016702)	10655	NM_001276710	11611	Mm.7457	NM_016702	ENSMUSG00000026272	Agxt	AGT|Agt1|Agxt1|SPT	alanine-glyoxylate aminotransferase	protein-coding	9.504	nan	1.793	7.377	6.358	5.164	6.002	5.554	5.271	8.861	6.518	3.746	6.152	8.946	6.125	10.868	5.795	8.226	nan	1.667	1.692	nan	1.957	1.948	10.005
1460	chr10	77043828	77046969	+	0	NA	intron (NM_001199271, intron 5 of 5)	intron (NM_001199271, intron 5 of 5)	12186	NM_031196	20509	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding	6.375	5.755	1.828	7.857	4.547	3.619	4.593	5.060	4.358	5.330	4.381	2.743	4.481	6.128	6.595	6.387	3.592	6.615	nan	1.344	1.612	3.175	0.973	1.333	8.515
13061	chr7	29353470	29374424	+	0	NA	intron (NM_001081028, intron 13 of 22)	intron (NM_001081028, intron 13 of 22)	59942	NM_013874	29861	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	6.487	1.560	0.584	8.106	3.400	1.782	8.166	10.535	5.454	5.984	5.441	3.232	8.493	9.773	9.199	9.976	5.709	9.826	3.567	2.088	1.742	4.552	1.807	1.561	11.682
10308	chr4	99799198	99805769	+	0	NA	intron (NM_026348, intron 2 of 8)	intron (NM_026348, intron 2 of 8)	26635	NM_026348	67733	Mm.257094	NM_026348	ENSMUSG00000028549	Itgb3bp	4930471O16Rik|AU022583	integrin beta 3 binding protein (beta3-endonexin)	protein-coding	1.168	nan	0.326	0.942	0.505	0.227	0.920	0.958	nan	nan	0.535	0.296	1.179	0.616	nan	1.918	0.892	1.481	3.305	8.408	4.492	7.819	1.801	1.099	1.914
12751	chr6	129129284	129136357	+	0	NA	Intergenic	Intergenic	16302	NR_073569	724020	Mm.424965	NR_073569		Klrb1-ps1	Nkrp1e	killer cell lectin-like receptor subfamily B member 1, pseudogene 1	pseudo	10.485	11.904	5.767	8.966	4.561	2.465	6.097	nan	7.433	7.396	7.479	4.223	7.468	7.248	6.468	7.178	7.287	8.981	3.490	3.914	2.939	3.779	3.061	2.703	5.009
1202	chr10	27946667	27948633	+	0	NA	Intergenic	MIR3|SINE|MIR	-127170	NM_008983	19272	Mm.332303	NM_008983	ENSMUSG00000019889	Ptprk	AI853699|PTPk|RPTPkappa	protein tyrosine phosphatase, receptor type, K	protein-coding	2.548	0.618	0.335	1.856	1.109	0.499	2.506	2.923	3.013	2.654	0.993	2.313	4.620	3.529	4.705	3.679	3.144	3.088	1.134	0.395	0.187	0.910	0.717	0.244	1.046
12664	chr6	120224713	120225819	+	0	NA	intron (NM_198884, intron 3 of 19)	ORR1G|LTR|ERVL-MaLR	31443	NM_001347432	29862	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	1.654	0.241	0.371	0.724	0.346	0.444	1.024	0.524	1.584	1.540	3.824	1.086	1.498	3.560	1.170	0.736	0.601	1.852	0.856	0.152	0.222	1.086	nan	0.366	2.620
14478	chr8	96501259	96506893	+	0	NA	Intergenic	L1Md_A|LINE|L1	41897	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	3.055	0.865	0.514	1.945	3.331	2.311	4.858	5.727	2.235	2.449	1.201	1.128	4.758	3.420	3.349	4.130	4.952	3.078	0.994	0.924	0.871	0.959	1.227	1.266	4.573
595	chr1	132990816	132994887	+	0	NA	intron (NM_001302801, intron 10 of 10)	ORR1C1|LTR|ERVL-MaLR	32565	NR_126506	17248	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	9.554	7.674	1.783	8.826	4.772	3.479	5.895	5.644	5.196	12.174	4.580	2.061	7.850	9.776	9.242	12.994	6.435	nan	nan	1.633	1.722	3.162	1.515	1.894	11.771
2838	chr11	102887869	102896082	+	0	NA	intron (NM_001131020, intron 6 of 7)	intron (NM_001131020, intron 6 of 7)	5225	NM_001131020	14580	Mm.1239	NM_010277	ENSMUSG00000020932	Gfap	AI836096	glial fibrillary acidic protein	protein-coding	6.432	nan	1.796	4.326	3.390	2.947	3.343	3.627	4.639	4.324	2.432	1.962	4.185	5.210	4.564	5.688	4.969	5.225	1.782	nan	1.462	1.630	nan	nan	5.320
13928	chr7	150907648	150910835	+	0	NA	Intergenic	Intergenic	5594406	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	4.361	1.925	0.836	6.739	3.470	1.593	3.931	8.238	3.293	4.472	3.633	1.125	5.532	8.265	5.753	6.836	3.622	7.313	3.638	1.590	1.154	3.424	nan	1.802	6.933
6996	chr18	5132275	5135754	+	0	NA	Intergenic	Intergenic	87425	NM_001347449	225115	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	7.083	1.239	0.638	7.529	2.501	1.481	3.279	4.835	3.508	4.396	2.680	1.001	nan	7.944	6.089	6.290	3.412	5.363	0.906	0.900	0.396	1.229	0.812	0.482	8.791
11308	chr5	66622646	66624598	+	0	NA	Intergenic	B1_Mur4|SINE|Alu	-4805	NM_001310626	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	5.124	0.734	0.707	2.555	3.903	3.407	5.887	4.208	3.625	3.829	1.097	1.096	3.840	6.235	5.574	4.818	6.260	4.205	0.756	1.054	0.810	nan	0.787	0.796	3.782
11790	chr5	135635879	135639598	+	0	NA	intron (NM_146002, intron 2 of 3)	B3|SINE|B2	5084	NM_146002	215160	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	3.375	1.518	1.179	3.099	1.612	0.948	4.579	3.508	2.675	3.862	2.583	1.054	4.794	7.250	4.116	6.637	3.207	3.695	0.812	1.105	0.677	0.834	nan	0.563	4.507
9279	chr3	51592571	51595077	+	0	NA	Intergenic	ORR1A4|LTR|ERVL-MaLR	-33001	NM_080793	73251	Mm.192111	NM_080793	ENSMUSG00000037111	Setd7	1600028F23Rik|H3K4MT|KMT7|Set7|Set7/9|mKIAA1717	SET domain containing (lysine methyltransferase) 7	protein-coding	3.179	1.156	0.629	1.527	0.974	0.493	1.049	0.902	1.291	1.246	0.702	0.587	0.482	1.258	1.547	1.467	0.876	1.620	5.730	4.322	1.911	7.660	7.505	4.156	2.266
8564	chr2	118687207	118688388	+	0	NA	intron (NM_001033254, intron 3 of 10)	intron (NM_001033254, intron 3 of 10)	10551	NM_001145854	214230	Mm.241857	NM_001033254	ENSMUSG00000074923	Pak6	4732456M09	p21 protein (Cdc42/Rac)-activated kinase 6	protein-coding	8.477	6.807	1.730	5.843	1.477	1.241	6.123	9.653	4.340	4.346	4.464	1.344	nan	5.112	5.568	9.878	4.875	6.677	2.226	1.818	1.111	3.407	3.139	2.419	8.342
14817	chr8	129279210	129285245	+	0	NA	intron (NM_001346808, intron 3 of 3)	MurSatRep1|Unknown|Unknown	18597	NR_144501	102635552		NM_001346808		Gm32856	-	predicted gene, 32856	protein-coding	8.552	5.202	2.838	6.139	6.236	4.207	6.648	8.329	4.994	6.016	3.955	2.751	6.624	7.946	6.917	7.251	5.409	7.051	nan	3.024	2.374	nan	4.175	nan	5.961
13568	chr7	117102439	117103908	+	0	NA	Intergenic	Intergenic	-277806	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	13.239	9.439	2.928	12.082	8.950	7.114	6.078	7.522	7.168	18.054	5.710	3.550	8.499	9.233	9.154	11.524	8.932	9.826	3.561	3.458	5.091	5.023	3.644	5.394	18.384
2926	chr11	107508775	107510574	+	0	NA	Intergenic	Intergenic	30146	NM_025894	66997	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	2.794	0.719	0.330	3.038	1.387	0.133	0.794	0.692	nan	nan	0.964	0.650	2.062	3.018	1.641	2.790	1.967	3.154	1.011	0.390	0.272	1.637	0.521	0.427	3.814
11915	chr5	143665694	143675165	+	0	NA	intron (NM_001163548, intron 1 of 12)	intron (NM_001163548, intron 1 of 12)	19188	NM_001163548	19159	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	11.156	16.840	5.822	12.454	7.686	5.226	10.784	9.071	7.959	9.947	6.294	4.755	8.680	13.497	11.387	10.564	6.455	11.328	3.713	2.709	2.410	3.962	1.881	2.057	13.762
10702	chr4	135125579	135130027	+	0	NA	intron (NM_019732, intron 1 of 5)	ID_B1|SINE|B4	7158	NM_019732	12399	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	nan	2.067	0.844	1.780	1.196	0.493	2.319	2.403	nan	2.176	7.111	2.885	2.090	3.779	2.807	3.066	0.864	nan	3.542	1.557	1.444	3.479	nan	1.275	2.710
12700	chr6	125180636	125184791	+	0	NA	intron (NM_146171, intron 9 of 31)	intron (NM_146171, intron 9 of 31)	3718	NR_028517	100217413		NR_028517		Scarna10	MBI-52	small Cajal body-specific RNA 10	ncRNA	7.891	13.511	5.070	8.433	4.620	2.086	6.136	6.625	4.204	5.246	4.301	1.871	5.205	7.698	6.617	9.065	5.575	7.258	4.657	3.802	2.147	4.345	3.921	2.899	9.193
11084	chr5	28381402	28382678	+	0	NA	intron (NM_028234, intron 10 of 18)	intron (NM_028234, intron 10 of 18)	64851	NM_028234	381626	Mm.304075	NM_028234	ENSMUSG00000048271	Rbm33	3200001K10Rik|6430512A10Rik|AA386890|Prr8	RNA binding motif protein 33	protein-coding	2.139	0.729	0.134	2.347	1.120	0.370	2.986	4.236	3.498	3.821	0.461	1.097	3.116	4.567	3.925	4.642	2.567	3.720	2.613	0.885	1.015	2.696	1.868	1.138	4.122
835	chr1	166558559	166560856	+	0	NA	Intergenic	L1_Mm|LINE|L1	-62119	NM_001164306	226601	Mm.475593	NM_001164306	ENSMUSG00000086056	Gm4846	EG226601|Fmo13	predicted gene 4846	protein-coding	5.251	0.697	0.287	3.121	1.691	0.805	6.146	4.103	5.180	5.657	2.290	1.686	8.059	7.011	6.100	9.408	5.805	5.503	0.762	0.339	0.130	nan	nan	0.213	4.214
1267	chr10	43544449	43552330	+	0	NA	Intergenic	RSINE1|SINE|B4	-7395	NM_026411	67851	Mm.209953	NM_026411	ENSMUSG00000019797	1700021F05Rik	-	RIKEN cDNA 1700021F05 gene	protein-coding	0.559	10.377	5.931	0.634	0.302	0.156	0.431	0.427	0.506	0.565	0.415	0.321	0.207	0.319	0.359	0.618	0.604	0.499	nan	1.671	1.251	1.426	0.957	0.713	0.538
15325	chr9	77383944	77386297	+	0	NA	intron (NR_040378, intron 2 of 3)	intron (NR_040378, intron 2 of 3)	14296	NR_040378	70487	Mm.58958	NR_040378	ENSMUSG00000099170	5730403I07Rik	-	RIKEN cDNA 5730403I07 gene	ncRNA	2.902	0.836	0.328	2.297	1.380	0.438	2.963	4.533	2.208	1.728	2.998	1.153	4.025	4.569	4.861	5.458	2.806	5.355	0.796	nan	0.512	1.288	0.388	0.352	5.499
9550	chr3	95936025	95939581	+	0	NA	intron (NM_023210, intron 4 of 6)	intron (NM_023210, intron 4 of 6)	8546	NM_023210	66471	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	4.405	0.965	0.603	3.276	3.884	2.456	3.866	2.664	2.825	2.758	nan	1.520	4.503	4.649	3.058	2.947	2.579	5.345	3.264	2.749	1.465	4.541	3.231	1.770	3.162
113	chr1	37743539	37745605	+	0	NA	Intergenic	Intergenic	-24761	NM_028096	72097	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	5.500	0.709	0.168	3.340	1.073	0.609	3.430	1.965	3.143	3.302	1.642	0.528	3.932	4.658	2.652	7.121	2.421	5.570	0.568	0.546	0.363	1.676	0.495	0.277	5.316
4015	chr13	41344315	41347945	+	0	NA	intron (NM_001111324, intron 2 of 7)	intron (NM_001111324, intron 2 of 7)	12871	NM_017464	18003	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	5.363	nan	1.035	5.630	3.050	2.350	nan	4.737	3.978	6.185	2.162	2.278	4.519	5.661	5.286	5.980	3.086	5.843	2.513	1.427	1.713	3.317	1.679	2.521	7.701
12025	chr6	4897319	4898864	+	0	NA	Intergenic	Intergenic	-5229	NM_181595	243725	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	1.768	0.662	0.419	1.288	1.718	0.932	3.898	0.956	1.268	1.824	0.650	0.435	4.020	4.896	2.942	4.214	2.252	2.373	0.861	0.505	0.528	0.503	0.745	0.680	1.355
5487	chr15	82053135	82056931	+	0	NA	Intergenic	MLTR25C|LTR|ERVK	-4118	NM_001166475	328573	Mm.399189	NM_001166475	ENSMUSG00000075524	4930407I10Rik	Gm747	RIKEN cDNA 4930407I10 gene	protein-coding	nan	16.373	6.714	nan	0.203	0.225	nan	0.326	0.344	nan	nan	0.211	0.274	nan	0.473	0.610	nan	0.533	0.744	0.837	0.656	nan	0.528	0.606	0.714
7021	chr18	11044610	11059409	+	0	NA	promoter-TSS (NM_010258)	promoter-TSS (NM_010258)	-501	NM_010258	14465	Mm.329287	NM_010258	ENSMUSG00000005836	Gata6	AA410133|GATA-6	GATA binding protein 6	protein-coding	nan	1.390	0.474	5.464	3.864	2.079	10.683	7.561	5.297	7.767	0.668	1.398	8.536	10.377	8.805	9.038	8.080	9.289	1.419	1.075	0.899	2.258	0.523	0.572	10.838
9639	chr3	104326783	104331928	+	0	NA	Intergenic	Intergenic	-108949	NM_001159354	99470	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding	3.548	1.462	0.898	2.207	3.642	2.673	4.938	4.317	4.008	3.540	4.127	2.575	4.209	5.464	nan	3.540	3.519	3.838	1.249	1.166	1.445	0.877	1.611	1.609	2.788
6388	chr17	24297407	24300670	+	0	NA	exon (NM_001031621, exon 15 of 30)	exon (NM_001031621, exon 15 of 30)	-47629	NM_007634	12449	Mm.77695	NM_007634	ENSMUSG00000072082	Ccnf	CycF|Fbxo1	cyclin F	protein-coding	8.174	2.839	1.083	6.328	6.093	4.460	8.895	7.376	5.211	7.890	5.573	3.357	6.457	10.075	6.137	7.448	5.160	7.128	1.797	2.024	2.439	1.772	2.000	1.738	9.846
6049	chr16	35935709	35937733	+	0	NA	intron (NM_001013371, intron 1 of 4)	intron (NM_001013371, intron 1 of 4)	-1749	NM_030253	80285	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	3.437	2.881	1.352	2.413	3.095	1.962	1.593	2.346	2.221	2.033	1.622	1.429	3.118	2.532	2.610	3.433	2.501	4.357	1.602	1.240	0.897	0.919	0.918	1.282	5.431
12750	chr6	129057223	129060569	+	0	NA	Intergenic	Intergenic	12995	NR_024263	232408	Mm.259262	NM_153094	ENSMUSG00000030154	Klrb1f	A630024B12Rik|Nkr-p1f|Nkrp1-f|Nkrp1f	killer cell lectin-like receptor subfamily B member 1F	protein-coding	1.212	nan	0.743	1.006	0.779	0.219	0.801	nan	1.165	0.802	0.751	0.842	0.171	0.569	0.622	nan	0.742	1.320	2.891	4.078	1.818	2.269	4.967	3.209	0.564
8881	chr2	156954146	156961463	+	0	NA	intron (NM_013865, intron 3 of 15)	intron (NM_013865, intron 3 of 15)	34307	NM_013865	29812	Mm.279256	NM_013865	ENSMUSG00000027634	Ndrg3	4833415O14Rik|AI747193|Ndr3	N-myc downstream regulated gene 3	protein-coding	7.667	11.146	5.340	5.808	4.945	3.779	3.829	4.075	nan	nan	3.696	1.994	nan	nan	4.250	5.684	5.781	5.430	nan	2.831	2.706	3.319	2.202	1.687	nan
12797	chr6	135333566	135340908	+	0	NA	Intergenic	Intergenic	-25694	NM_010128	13730	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	4.112	0.386	0.209	2.545	3.357	1.752	7.552	3.657	5.732	5.761	2.605	1.520	8.557	8.659	nan	10.288	7.880	5.896	nan	0.737	0.267	0.548	0.669	0.360	nan
4365	chr13	104774350	104777666	+	0	NA	intron (NM_026072, intron 10 of 13)	(A)n|Simple_repeat|Simple_repeat	40945	NM_026072	67285	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	nan	nan	0.781	3.348	4.885	4.464	2.483	3.930	nan	nan	1.970	1.449	2.806	4.920	2.596	3.222	2.423	3.228	0.889	1.306	0.970	nan	1.219	1.007	3.059
6970	chr17	93909141	93910455	+	0	NA	Intergenic	Intergenic	710630	NM_009625	11516	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding	2.101	0.449	0.113	1.804	1.544	0.248	5.035	1.613	2.616	1.952	0.451	0.405	3.570	3.023	4.093	3.119	3.569	3.282	0.456	0.391	0.037	0.260	0.064	0.083	0.601
10530	chr4	126185843	126192064	+	0	NA	intron (NM_146153, intron 1 of 10)	B2_Mm2|SINE|B2	13757	NM_146153	230753	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	6.239	3.230	2.467	4.255	5.311	3.930	5.702	3.513	7.412	8.213	2.322	0.955	7.006	7.367	5.181	7.402	5.835	7.646	0.847	0.780	1.042	0.793	0.673	0.759	6.364
8440	chr2	91187357	91194555	+	0	NA	intron (NM_001177730, intron 4 of 9)	intron (NM_001177730, intron 4 of 9)	4079	NM_013839	22259	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	7.730	0.579	0.464	5.259	2.855	1.587	6.528	7.735	6.474	6.753	2.411	3.026	10.900	8.077	6.466	8.220	9.859	9.032	0.680	1.418	0.852	1.090	0.655	0.566	6.968
14341	chr8	74831498	74836246	+	0	NA	Intergenic	RLTR10D2|LTR|ERVK	-39302	NM_027837	71597	Mm.158735	NM_027837	ENSMUSG00000031621	Isx	9130012O13Rik|Pix-1	intestine specific homeobox	protein-coding	2.526	nan	1.677	2.214	3.248	3.319	nan	nan	nan	1.576	0.775	1.065	1.171	1.667	1.774	nan	1.774	1.865	0.991	1.407	1.333	nan	1.189	1.381	nan
7624	chr19	21109880	21112647	+	0	NA	Intergenic	Intergenic	6553	NR_126458	75354	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	7.312	2.427	1.201	3.801	3.046	1.381	4.422	11.526	3.450	3.747	6.556	3.070	4.150	4.519	4.371	4.638	5.724	4.017	2.661	2.666	1.304	5.069	6.301	3.239	5.660
8566	chr2	118840663	118841712	+	0	NA	Intergenic	Intergenic	-20813	NM_019826	56357	Mm.6635	NM_019826	ENSMUSG00000027332	Ivd	1300016K07Rik|6720455E18Rik|AI463340	isovaleryl coenzyme A dehydrogenase	protein-coding	4.225	4.382	0.999	1.870	1.117	0.776	3.075	3.464	1.992	2.064	1.753	0.527	3.359	3.153	2.871	4.930	4.064	3.742	2.201	1.735	1.140	1.257	2.425	2.473	5.111
10744	chr4	137246670	137266608	+	0	NA	Intergenic	Intergenic	-20996	NM_009523	22417	Mm.20355	NM_009523	ENSMUSG00000036856	Wnt4	Wnt-4	wingless-type MMTV integration site family, member 4	protein-coding	nan	0.581	0.240	3.595	2.158	1.554	6.417	4.709	nan	3.879	1.254	1.746	4.281	7.506	4.455	4.514	2.314	nan	3.893	2.333	1.973	6.296	nan	1.807	7.706
507	chr1	120293831	120297360	+	0	NA	Intergenic	Intergenic	-24513	NM_001085409	68428	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	8.717	4.843	2.642	3.983	4.770	2.637	7.076	5.191	4.929	6.014	1.786	1.717	8.739	8.589	5.919	8.268	7.445	6.656	1.073	1.248	1.256	1.309	0.854	0.969	6.201
14728	chr8	125059450	125063554	+	0	NA	intron (NM_174853, intron 1 of 11)	intron (NM_174853, intron 1 of 11)	7307	NM_174854	244667	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	8.341	nan	0.640	nan	4.995	3.281	nan	8.163	4.210	5.093	4.801	1.500	7.412	8.082	6.679	9.217	8.486	7.810	nan	1.274	1.401	nan	1.028	nan	11.594
15255	chr9	69859750	69862180	+	0	NA	Intergenic	Arthur1B|DNA|hAT-Tip100	99819	NR_040765	319970	Mm.186434	NR_040765	ENSMUSG00000097623	B230323A14Rik	-	RIKEN cDNA B230323A14 gene	ncRNA	6.472	10.330	4.361	7.831	3.250	1.821	4.604	5.611	4.705	8.204	6.161	3.723	4.303	5.654	6.154	5.954	3.731	6.747	6.503	4.820	2.839	6.425	5.038	4.275	7.529
6908	chr17	84482832	84486565	+	0	NA	Intergenic	B3|SINE|B2	-18490	NM_183021	240174	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	5.208	5.064	1.729	7.336	3.303	1.241	3.860	5.180	4.057	3.950	9.031	3.538	2.853	4.526	4.355	5.189	3.252	4.612	1.049	1.212	0.777	1.444	0.922	0.491	6.906
6110	chr16	48798212	48801077	+	0	NA	Intergenic	Intergenic	-17212	NM_023881	57263	Mm.21123	NM_023881	ENSMUSG00000022650	Retnlb	9030012B21Rik|Fizz2|RELMbeta|Relmb|Xcp3	resistin like beta	protein-coding	6.288	0.446	0.366	3.671	2.097	1.072	2.600	nan	4.341	4.728	0.366	0.879	6.629	5.204	3.988	5.293	4.692	5.766	0.807	0.854	0.277	0.401	0.478	0.166	3.162
3843	chr13	12500329	12502589	+	0	NA	intron (NM_133643, intron 3 of 5)	intron (NM_133643, intron 3 of 5)	18991	NM_133643	171211	Mm.159671	NM_133643	ENSMUSG00000095105	Edaradd	1810032E07Rik|5830469M23Rik|A630043P06|cr	EDAR (ectodysplasin-A receptor)-associated death domain	protein-coding	6.109	1.167	1.361	2.015	2.830	1.759	1.540	1.844	3.457	4.265	1.401	1.020	2.101	4.738	3.326	3.403	2.886	3.090	1.084	1.502	0.880	0.553	0.845	1.140	3.614
3565	chr12	86310608	86312485	+	0	NA	Intergenic	Intergenic	-49571	NM_001159500	26380	Mm.235550	NM_011934	ENSMUSG00000021255	Esrrb	Err2|Errb|Estrrb|Nr3b2	estrogen related receptor, beta	protein-coding	12.342	10.200	5.063	5.830	8.859	4.605	6.234	7.356	3.982	5.634	4.540	3.589	4.975	8.566	6.340	7.154	8.550	5.603	2.949	4.009	2.878	3.388	4.336	2.963	10.107
12699	chr6	125140403	125142084	+	0	NA	intron (NM_138747, intron 14 of 15)	intron (NM_138747, intron 14 of 15)	-3981	NR_126495	320678	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	4.688	15.615	7.424	3.986	2.985	1.667	4.974	nan	2.396	3.499	3.121	2.187	4.476	4.997	5.390	nan	4.887	3.949	6.578	5.522	4.776	5.269	10.487	7.896	7.779
11281	chr5	65845211	65847425	+	0	NA	Intergenic	Intergenic	-17251	NM_001081105	74734	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	2.261	0.966	0.238	1.919	3.632	2.227	2.634	5.191	2.558	2.637	4.518	3.656	2.722	5.001	2.808	2.162	1.761	2.575	0.680	0.790	0.322	nan	0.716	0.472	2.187
15167	chr9	62207808	62225380	+	0	NA	Intergenic	Intergenic	27506	NR_040769	330958	Mm.411888	NR_040769	ENSMUSG00000111232	A730043L09Rik	A730043L09	RIKEN cDNA A730043L09 gene	ncRNA	5.396	1.570	0.785	5.129	3.531	2.150	4.807	5.825	3.722	4.859	1.306	1.772	5.169	7.127	6.067	7.327	4.161	5.928	1.312	1.323	1.427	1.499	0.969	0.836	10.030
10221	chr4	82265894	82270573	+	0	NA	Intergenic	Intergenic	202853	NR_040659	545641	Mm.216028	NR_040659	ENSMUSG00000085022	Gm5860	EG545641	predicted gene 5860	ncRNA	1.532	0.755	0.493	1.087	0.708	0.710	0.391	0.583	0.877	0.890	0.583	0.387	0.314	0.625	0.692	0.844	0.530	1.172	7.831	7.748	5.941	14.423	4.654	3.438	1.086
1258	chr10	42606612	42618686	+	0	NA	Intergenic	(TCCC)n|Simple_repeat|Simple_repeat	-29061	NM_152229	21907	Mm.287100	NM_152229	ENSMUSG00000019803	Nr2e1	Mtl1|Mtll|TLL|Tlx|XTLL|fierce|frc|tailless	nuclear receptor subfamily 2, group E, member 1	protein-coding	0.756	2.873	1.035	0.771	0.456	0.122	0.318	0.844	1.060	0.563	0.409	0.429	0.192	0.270	0.666	0.987	0.908	0.916	4.875	5.008	2.642	7.227	6.121	4.406	0.769
12022	chr6	3456009	3459469	+	0	NA	3' UTR (NM_178899, exon 10 of 10)	3' UTR (NM_178899, exon 10 of 10)	36759	NM_178899	101202	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	0.618	0.611	0.586	0.347	0.194	0.035	0.514	0.526	0.631	0.299	0.267	0.151	0.272	0.304	0.584	nan	0.876	0.677	0.811	3.747	2.070	3.338	0.815	0.387	nan
14314	chr8	73282236	73286821	+	0	NA	intron (NM_010687, intron 1 of 14)	intron (NM_010687, intron 1 of 14)	69012	NM_001317391	16795	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	5.580	4.566	2.137	5.841	3.664	2.055	nan	9.132	nan	6.103	2.852	1.782	5.748	7.048	6.128	8.748	5.858	6.126	2.178	2.119	1.702	nan	1.859	1.510	9.170
14007	chr8	11470984	11479918	+	0	NA	intron (NM_011227, intron 1 of 1)	intron (NM_011227, intron 1 of 1)	-2478	NR_126558	102132	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	8.447	3.260	1.349	7.225	6.919	5.273	6.573	10.442	5.190	7.552	4.574	2.678	9.391	9.782	7.930	10.008	7.226	8.241	1.189	2.063	2.112	2.531	0.918	0.835	9.679
12077	chr6	17584594	17590262	+	0	NA	Intergenic	Intergenic	-49670	NM_007604	12343	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	6.491	5.477	3.098	5.198	5.148	3.271	5.383	6.360	nan	6.063	3.379	2.274	5.392	7.281	4.609	5.883	4.960	5.654	2.047	1.267	1.427	1.828	1.964	2.258	4.849
10641	chr4	132722121	132731772	+	0	NA	3' UTR (NM_201368, exon 3 of 3)	3' UTR (NM_201368, exon 3 of 3)	5600	NM_201368	381560	Mm.44558	NM_201368	ENSMUSG00000037752	Xkr8	4931440N07Rik|AI597014|Gm1031|XRG8|mXkr8	X-linked Kx blood group related 8	protein-coding	4.769	5.388	3.557	6.193	4.329	3.522	3.182	3.157	3.496	3.523	2.680	2.246	2.222	3.667	nan	2.703	2.703	3.388	1.781	2.667	2.369	2.193	1.753	1.682	2.560
4030	chr13	42144059	42150368	+	0	NA	intron (NM_007772, intron 3 of 8)	intron (NM_007772, intron 3 of 8)	95192	NM_007772	110521	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	6.893	8.266	3.241	6.496	4.608	3.198	nan	nan	nan	7.586	3.687	2.406	5.305	8.489	6.866	7.482	4.980	5.490	2.654	2.226	2.142	3.694	2.488	2.393	8.841
9168	chr3	21833485	21838110	+	0	NA	Intergenic	Intergenic	-240855	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	5.444	10.303	4.033	4.318	3.289	1.627	6.066	5.938	4.939	4.403	6.840	3.888	4.531	6.431	5.217	6.209	4.842	5.655	2.670	1.898	1.330	3.854	1.967	1.498	6.989
7009	chr18	7704682	7706288	+	0	NA	Intergenic	Intergenic	-78622	NM_001161620	75739	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	2.023	1.198	1.092	2.488	1.573	0.607	2.160	2.610	1.429	1.242	3.882	1.678	1.769	3.913	2.512	2.360	0.753	1.839	0.551	0.698	0.229	0.864	0.539	0.181	1.604
2313	chr11	62387853	62391045	+	0	NA	intron (NM_011308, intron 13 of 44)	B3A|SINE|B2	49066	NM_001252313	20185	Mm.271814	NM_011308	ENSMUSG00000018501	Ncor1	5730405M06Rik|A230020K14Rik|N-CoR|RIP13|Rxrip13|mKIAA1047	nuclear receptor co-repressor 1	protein-coding	4.904	14.221	5.840	3.883	2.758	1.103	1.371	1.608	1.965	2.470	1.623	0.526	1.503	3.067	2.202	2.333	1.866	2.077	3.983	4.656	2.555	4.906	4.026	2.357	3.252
3653	chr12	103210697	103218542	+	0	NA	intron (NM_133364, intron 3 of 4)	intron (NM_133364, intron 3 of 4)	27527	NM_133364	170952	Mm.217019	NM_133364	ENSMUSG00000041669	Prima1	B230212M13Rik|BB120497|PRiMA	proline rich membrane anchor 1	protein-coding	9.111	13.061	7.001	nan	4.944	4.112	5.382	nan	nan	nan	3.753	2.717	4.903	nan	5.746	6.306	5.663	5.632	3.495	2.720	2.850	3.125	2.897	2.686	nan
12614	chr6	114937318	114941520	+	0	NA	Intergenic	RSINE1|SINE|B4	-17667	NM_177683	232334	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	7.040	2.897	2.077	4.302	4.085	2.548	11.307	9.178	5.495	5.489	9.847	5.063	9.451	10.175	9.512	10.786	8.527	7.489	8.935	4.210	3.371	7.197	5.036	4.346	9.979
12146	chr6	34529176	34530413	+	0	NA	Intergenic	Intergenic	53438	NM_007563	12183	Mm.282863	NM_007563	ENSMUSG00000038871	Bpgm	AI323730|AL022789|C86192	2,3-bisphosphoglycerate mutase	protein-coding	4.816	0.454	0.285	1.335	0.589	0.101	8.583	3.902	1.872	1.575	1.464	0.886	7.121	3.806	4.983	5.026	3.883	3.622	nan	0.510	0.279	nan	nan	0.351	nan
5463	chr15	81076851	81084749	+	0	NA	intron (NM_001082536, intron 2 of 13)	B1_Mus2|SINE|Alu	24247	NM_153049	223701	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	9.061	nan	0.922	nan	3.197	2.111	nan	10.905	2.386	2.804	nan	1.572	4.121	6.044	5.250	3.595	nan	4.167	1.272	1.823	1.351	nan	1.055	0.882	5.013
6998	chr18	5332882	5335502	+	0	NA	intron (NM_178722, intron 1 of 4)	CpG	247	NM_178722	240186	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	7.746	7.722	1.777	9.654	3.013	1.507	5.678	8.916	5.080	7.259	6.179	3.720	8.452	8.663	7.824	7.981	5.386	8.061	3.740	2.008	1.443	5.626	3.958	3.372	10.014
3354	chr12	57514407	57520584	+	0	NA	Intergenic	Intergenic	28626	NM_008259	15375	Mm.4578	NM_008259	ENSMUSG00000035451	Foxa1	Hnf-3a|Hnf3a|Tcf-3a|Tcf3a	forkhead box A1	protein-coding	4.704	nan	0.455	4.116	3.094	1.339	4.883	3.504	6.114	6.338	2.588	1.140	7.616	8.253	nan	nan	5.395	9.144	1.859	1.117	0.632	1.653	0.979	0.532	5.619
10941	chr4	150347144	150350137	+	0	NA	intron (NM_001085492, intron 1 of 22)	intron (NM_001085492, intron 1 of 22)	66724	NM_001085492	68703	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	4.133	nan	0.731	3.289	7.489	6.922	5.433	6.529	7.490	8.835	6.549	6.517	6.704	7.076	3.363	3.966	4.207	4.796	0.783	0.979	1.295	0.550	0.788	0.932	2.026
12707	chr6	125383077	125386282	+	0	NA	Intergenic	Intergenic	-4175	NM_198604	213522	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	5.970	nan	1.145	4.096	5.620	3.386	5.079	5.450	4.027	4.245	4.787	4.034	4.378	7.292	5.541	7.675	4.901	5.934	1.138	1.178	1.355	0.935	1.174	0.866	5.098
14786	chr8	127775290	127779714	+	0	NA	Intergenic	MTC|LTR|ERVL-MaLR	477850	NM_001013580	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	5.992	nan	0.407	4.763	4.478	2.714	nan	5.664	4.512	6.667	5.349	1.105	7.822	9.051	4.933	6.263	3.721	7.846	nan	1.299	0.818	nan	1.191	nan	6.594
10899	chr4	149111088	149112102	+	0	NA	intron (NM_010044, intron 3 of 4)	B2_Mm2|SINE|B2	7453	NM_001025296	13347	Mm.41433	NM_010044	ENSMUSG00000028974	Dffa	A330085O09Rik|DFF35|Dff45|ICAD|ICAD-L|ICAD-S	DNA fragmentation factor, alpha subunit	protein-coding	2.924	10.468	1.417	6.027	1.428	1.295	3.913	3.603	2.635	5.479	3.329	2.097	3.508	4.492	6.544	6.960	1.543	5.928	3.897	0.807	1.215	8.009	1.936	4.514	10.134
6895	chr17	83674990	83678363	+	0	NA	Intergenic	RLTR14|LTR|ERV1	-29487	NM_001171054	116871	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	8.262	22.131	7.481	7.712	3.598	2.587	6.908	4.970	5.004	7.957	5.610	3.048	4.188	6.470	5.729	7.063	4.646	6.525	4.458	3.813	3.097	4.841	3.690	2.820	9.413
2014	chr11	20640287	20642541	+	0	NA	intron (NM_001038625, intron 1 of 1)	intron (NM_001038625, intron 1 of 1)	9437	NM_001038625	58172	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	11.273	16.260	5.030	12.537	5.077	3.325	8.412	9.546	6.837	15.263	9.103	4.688	8.747	11.627	10.811	12.922	7.781	10.579	7.126	2.220	2.593	7.800	3.749	3.641	14.902
10326	chr4	102295908	102303397	+	0	NA	intron (NM_019840, intron 1 of 14)	L1_Mus2|LINE|L1	44713	NM_019840	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	6.082	nan	1.252	3.258	1.755	0.993	1.347	5.459	nan	nan	1.888	2.488	3.155	4.017	nan	2.007	2.296	3.975	0.749	1.813	1.552	nan	0.447	0.311	3.281
15617	chr9	121992656	121995180	+	0	NA	intron (NM_001289559, intron 1 of 2)	intron (NM_001289559, intron 1 of 2)	2108	NM_001289559	215494	Mm.402151	NM_153540	ENSMUSG00000066235	Pomgnt2	Ago61|C85492|Gtdc2	protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2	protein-coding	8.548	1.569	1.255	5.056	3.283	2.486	4.531	4.432	5.149	6.594	2.721	1.087	5.827	7.247	5.929	6.821	5.703	6.677	2.241	2.700	1.510	3.609	nan	2.160	8.432
14322	chr8	73839556	73840638	+	0	NA	Intergenic	L1M3|LINE|L1	-486557	NM_010687	16795	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	3.674	1.188	1.090	1.578	2.698	2.173	2.055	6.203	nan	1.257	0.784	0.851	1.991	4.227	2.167	nan	1.965	2.228	2.491	3.068	1.482	2.292	2.587	1.327	2.212
9283	chr3	51672161	51676033	+	0	NA	intron (NM_001310482, intron 2 of 3)	intron (NM_001310482, intron 2 of 3)	12918	NM_001310482	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	2.090	0.767	0.401	1.855	0.970	0.731	2.471	1.737	1.560	1.651	0.606	0.807	1.991	1.750	2.756	3.017	1.635	3.030	4.855	2.597	1.481	5.860	3.676	3.185	2.737
6641	chr17	44391485	44393650	+	0	NA	Intergenic	L1Md_F2|LINE|L1	203995	NM_172621	224796	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg	chloride intracellular channel 5	protein-coding	2.774	1.171	0.534	4.600	2.248	0.748	2.239	1.045	3.014	2.492	0.650	1.190	2.035	4.416	4.217	4.990	2.900	4.841	0.432	0.817	0.615	0.724	0.337	0.228	3.506
7784	chr19	42216971	42226634	+	0	NA	Intergenic	L1MC1|LINE|L1	-19550	NM_018780	54612	Mm.470071	NM_018780	ENSMUSG00000018822	Sfrp5	AI605071|SARP3	secreted frizzled-related sequence protein 5	protein-coding	7.792	3.175	1.257	9.627	5.590	3.722	6.812	9.588	5.699	9.593	3.772	2.959	6.763	10.318	8.471	9.724	nan	9.013	1.072	1.113	1.457	2.271	1.847	2.156	11.490
12943	chr7	17186280	17187598	+	0	NA	Intergenic	L1Md_A|LINE|L1	-16538	NM_054064	114872	Mm.322280	NM_054064	ENSMUSG00000023159	Psg29	AA102956|AA409969|cea17	pregnancy-specific glycoprotein 29	protein-coding	3.357	0.881	0.021	2.418	2.040	0.747	3.305	3.023	2.288	2.391	0.875	0.743	3.131	4.933	2.719	3.645	2.324	3.920	0.648	0.346	0.258	0.454	0.608	0.279	4.175
5140	chr15	38380552	38390324	+	0	NA	Intergenic	Intergenic	-84727	NM_001289471	21847	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	8.522	2.377	1.157	6.639	5.607	3.585	7.615	12.436	4.889	5.369	5.844	4.098	7.409	9.045	6.880	6.339	5.933	7.233	2.563	1.590	1.264	nan	1.775	1.783	6.889
7294	chr18	61364360	61372818	+	0	NA	intron (NM_133249, intron 1 of 11)	intron (NM_133249, intron 1 of 11)	31842	NM_133249	170826	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	4.390	4.011	1.716	nan	2.360	1.350	5.280	5.714	3.921	4.835	3.283	2.121	6.957	6.071	4.888	5.138	3.761	5.443	nan	0.771	0.742	nan	0.737	0.658	nan
2110	chr11	44525075	44532934	+	0	NA	intron (NM_028862, intron 2 of 10)	intron (NM_028862, intron 2 of 10)	9627	NM_001166553	74315	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	0.669	8.481	5.768	0.903	0.121	0.109	0.400	nan	0.476	0.501	0.302	0.348	0.182	0.387	0.239	nan	0.518	nan	nan	0.518	0.299	nan	nan	0.147	0.298
5182	chr15	55735923	55740794	+	0	NA	intron (NM_016667, intron 3 of 6)	L1_Mus1|LINE|L1	168591	NM_016667	20649	Mm.309425	NM_016667	ENSMUSG00000060429	Sntb1	-	syntrophin, basic 1	protein-coding	5.596	2.947	1.188	5.290	2.744	1.408	6.708	7.877	nan	4.443	1.835	0.639	7.796	5.995	5.752	6.912	7.773	4.937	1.494	1.406	1.334	0.824	2.156	1.931	7.087
1342	chr10	60913480	60915361	+	0	NA	Intergenic	Intergenic	-8603	NR_105835	102466158		NR_105835	ENSMUSG00000099279	Mir6408	Gm27451|mmu-mir-6408	microRNA 6408	ncRNA	11.840	8.963	3.906	8.677	5.710	4.728	7.171	9.196	5.227	8.914	6.090	4.807	7.484	8.511	8.143	9.292	6.442	8.763	4.865	3.860	5.132	5.615	4.147	5.490	13.228
14397	chr8	86190168	86191257	+	0	NA	Intergenic	Intergenic	349710	NM_199446	102093	Mm.237296	NM_199446	ENSMUSG00000036879	Phkb	AI463271	phosphorylase kinase beta	protein-coding	6.393	1.391	0.986	4.858	3.438	2.556	3.687	3.625	2.804	2.928	1.409	1.473	1.896	4.122	3.760	4.928	3.375	5.018	2.642	3.210	2.526	9.152	3.189	1.995	5.863
1968	chr11	8574337	8575944	+	0	NA	intron (NM_001083587, intron 4 of 30)	intron (NM_001083587, intron 4 of 30)	89395	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	nan	1.915	1.225	3.317	1.592	0.671	2.729	3.419	1.988	2.409	5.449	2.624	2.095	3.795	2.130	1.848	1.573	2.900	0.903	nan	0.534	0.426	1.010	0.652	1.503
2457	chr11	74859955	74864088	+	0	NA	intron (NM_197943, intron 11 of 22)	ID_B1|SINE|B4	6173	NR_105891	102465558		NR_105891	ENSMUSG00000098317	Mir6926	Gm27949|mmu-mir-6926	microRNA 6926	ncRNA	2.106	1.808	0.709	3.622	0.999	0.442	nan	2.421	2.385	2.414	2.647	1.482	1.977	nan	1.874	3.386	1.843	2.534	3.424	1.964	nan	4.892	1.904	0.812	2.014
4359	chr13	103647379	103652251	+	0	NA	intron (NR_136924, intron 1 of 3)	intron (NR_136924, intron 1 of 3)	57818	NR_136924	102632492	Mm.383874	NR_136924		Gm30551	Gm30710	predicted gene, 30551	ncRNA	4.278	nan	0.698	3.614	2.434	0.860	2.443	4.808	3.716	nan	3.205	1.862	3.967	4.126	4.288	5.386	3.734	4.924	2.059	1.293	0.608	nan	1.774	1.552	3.584
7651	chr19	24237310	24244179	+	0	NA	Intergenic	Intergenic	-15718	NM_011597	21873	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	8.719	3.240	1.245	5.983	6.942	5.055	7.006	9.647	4.852	4.652	nan	2.956	5.135	7.446	6.809	7.734	8.000	7.568	nan	2.157	1.709	3.735	nan	1.112	9.754
4009	chr13	40820657	40829182	+	0	NA	Intergenic	RLTR42-int|LTR|ERVK	-34849	NM_023887	14538	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0.606	nan	2.017	0.730	0.834	0.331	nan	nan	nan	nan	10.960	6.679	0.259	0.382	0.256	nan	0.406	nan	0.512	0.465	0.431	0.363	0.444	0.470	nan
4065	chr13	45788072	45791121	+	0	NA	intron (NM_001199304, intron 4 of 6)	B4A|SINE|B4	175395	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	4.806	1.985	0.524	nan	3.835	2.032	3.816	4.778	4.195	4.347	2.031	1.293	3.969	7.323	6.894	7.554	3.078	6.112	2.014	nan	0.350	0.830	0.827	0.591	9.063
5660	chr15	99900375	99905949	+	0	NA	Intergenic	B1F|SINE|Alu	-27706	NM_001113545	65970	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	4.241	1.109	0.683	3.437	2.585	1.488	3.369	7.513	2.853	3.294	1.766	1.600	4.094	4.068	3.881	4.490	4.956	4.517	4.191	2.871	2.644	3.333	5.351	4.290	4.751
15645	chr9	123758546	123762230	+	0	NA	Intergenic	Intergenic	-6823	NM_009913	12769	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	7.565	10.134	3.335	7.401	nan	0.982	nan	nan	nan	7.071	4.714	2.715	nan	6.544	nan	nan	3.996	nan	3.258	1.251	1.103	2.300	1.602	1.501	10.101
10660	chr4	133637365	133638794	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-4650	NM_001017968	503610	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	2.254	5.664	1.512	2.389	1.653	0.938	3.477	4.609	nan	2.396	1.501	1.009	2.644	5.078	3.191	4.645	2.193	2.156	4.323	2.561	1.208	5.620	nan	2.652	5.174
3476	chr12	80138105	80144290	+	0	NA	Intergenic	Intergenic	-8353	NR_033514	69548	Mm.269712	NR_033514	ENSMUSG00000097729	2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	4.701	0.609	0.421	1.870	3.101	1.446	4.735	6.772	2.880	2.461	4.454	3.185	4.420	6.178	4.470	5.616	4.517	3.624	1.070	0.870	0.634	0.754	0.982	0.709	3.739
8619	chr2	124587344	124591102	+	0	NA	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-21073	NM_199238	214968	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	3.957	0.708	0.446	1.634	1.047	0.337	3.786	3.455	1.782	1.385	1.111	0.927	4.008	6.222	2.490	1.887	1.794	2.132	nan	0.446	0.387	1.051	0.362	0.221	2.068
10391	chr4	114728850	114731172	+	0	NA	Intergenic	Intergenic	-91709	NR_033617	433746	Mm.388908	NR_033617	ENSMUSG00000055198	Gm12830	OTTMUSG00000008584	predicted gene 12830	ncRNA	5.667	1.503	0.359	7.264	3.677	1.699	2.056	1.951	2.192	4.715	1.934	0.875	1.340	3.289	1.979	3.307	2.383	3.742	0.620	2.172	1.424	0.790	0.777	0.678	5.277
10107	chr4	56877067	56881506	+	0	NA	3' UTR (NM_175518, exon 18 of 18)	3' UTR (NM_175518, exon 18 of 18)	-14075	NM_018761	54366	Mm.218891	NM_018761	ENSMUSG00000038816	Ctnnal1	ACRP|AI616177|AW545119|C86009|Catnal1	catenin (cadherin associated protein), alpha-like 1	protein-coding	3.665	nan	0.578	3.347	1.745	0.929	3.095	3.690	3.099	5.085	1.244	1.040	4.967	6.566	4.968	6.910	3.475	4.700	nan	1.190	0.720	3.175	0.785	1.095	6.615
1355	chr10	62254697	62256087	+	0	NA	intron (NM_009314, intron 1 of 4)	URR1B|DNA|hAT-Charlie	2954	NM_009314	21337	Mm.8054	NM_009314	ENSMUSG00000020081	Tacr2	Nk2r|Skr|Tac2r	tachykinin receptor 2	protein-coding	15.375	14.603	10.124	12.067	16.733	13.788	13.282	9.818	10.046	13.840	8.636	7.770	9.709	14.082	9.414	11.077	12.436	9.514	nan	6.089	11.049	5.881	8.679	14.587	15.179
3640	chr12	101541529	101551278	+	0	NA	intron (NM_173023, intron 16 of 26)	L1Md_F2|LINE|L1	141730	NM_173023	271036	Mm.84218	NM_173023	ENSMUSG00000047014	Catsperb	4931410B03|4932415G16Rik	catsper channel auxiliary subunit beta	protein-coding	0.989	1.291	0.629	0.983	0.345	0.144	0.687	0.579	0.663	0.792	0.394	0.326	0.278	0.429	0.992	1.241	0.805	nan	4.289	1.767	1.091	6.199	2.262	1.609	nan
9984	chr4	40128525	40130023	+	0	NA	Intergenic	L1MA8|LINE|L1	-13991	NM_007386	11428	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	1.979	0.647	1.067	0.937	0.462	0.164	2.858	4.037	1.294	1.965	0.247	0.678	2.712	3.967	3.186	3.643	2.734	1.690	0.760	0.593	0.245	0.245	0.298	0.403	3.493
9116	chr2	180935684	180937856	+	0	NA	intron (NM_021426, intron 5 of 6)	intron (NM_021426, intron 5 of 6)	7747	NM_001163247	329581	Mm.187879	NM_001163247	ENSMUSG00000038840	Birc7	E130019N06|KIAP|Livin|ML-IAP	baculoviral IAP repeat-containing 7 (livin)	protein-coding	6.540	1.567	1.187	3.684	4.007	2.014	4.344	9.991	3.533	5.524	1.399	0.373	5.168	10.377	3.704	5.354	6.325	5.107	0.516	0.832	0.692	0.756	0.640	0.494	6.840
8084	chr2	30218966	30221657	+	0	NA	Intergenic	IAPEz-int|LTR|ERVK	-14612	NM_172404	70266	Mm.216089	NM_172404	ENSMUSG00000039648	Kyat1	2010009K05Rik|AI182306|Ccbl1|Gtk|Kat1|KatI	kynurenine aminotransferase 1	protein-coding	5.001	3.276	1.773	5.361	2.570	1.430	6.339	7.012	nan	4.781	2.601	2.057	4.904	6.274	4.885	6.993	6.501	5.194	4.296	4.067	3.868	3.690	4.050	3.937	9.301
12321	chr6	72319859	72325912	+	0	NA	intron (NM_138592, intron 10 of 12)	intron (NM_138592, intron 10 of 12)	18275	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	6.620	2.961	1.603	4.452	3.963	3.007	9.464	8.450	4.476	4.902	9.740	4.746	7.515	10.711	7.508	10.975	11.103	5.737	1.462	1.723	1.612	1.399	1.864	1.342	7.465
3095	chr11	119846527	119852993	+	0	NA	intron (NM_028898, intron 16 of 33)	Lx4A|LINE|L1	-15395	NR_045312	319454	Mm.442144	NR_045312	ENSMUSG00000085081	Rptoros	A430071A18Rik	regulatory associated protein of MTOR, complex 1, opposite strand	ncRNA	5.528	nan	0.505	4.923	3.659	1.425	5.401	7.483	3.881	4.321	2.978	2.374	5.369	7.114	7.430	8.188	4.690	5.670	2.205	nan	1.039	2.726	1.490	0.915	8.350
3617	chr12	93003155	93005342	+	0	NA	Intergenic	Intergenic	440575	NR_126436	75295	Mm.243878	NR_126436		4930559C10Rik	-	RIKEN cDNA 4930559C10 gene	ncRNA	5.107	3.975	1.708	4.737	2.698	1.076	2.837	2.610	2.697	2.855	4.404	1.330	3.604	4.463	3.064	5.046	3.884	4.182	1.169	0.856	0.768	0.831	0.706	0.387	5.672
2043	chr11	24037560	24042854	+	0	NA	Intergenic	Intergenic	-37849	NM_016707	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.790	7.339	3.470	nan	0.179	0.123	0.285	0.394	0.491	0.685	0.649	0.207	0.196	0.324	0.557	0.808	nan	0.745	0.310	0.596	0.127	0.289	0.290	0.108	0.631
9437	chr3	88091576	88093974	+	0	NA	intron (NM_001033484, intron 11 of 37)	intron (NM_001033484, intron 11 of 37)	10724	NM_001033484	404710	Mm.331133	NM_001033484	ENSMUSG00000028068	Iqgap3	AI593484|D030034H08	IQ motif containing GTPase activating protein 3	protein-coding	2.885	0.586	0.756	2.481	3.945	3.830	5.336	1.578	1.238	1.150	1.532	0.253	5.201	6.737	4.064	nan	1.225	3.859	nan	0.928	0.869	0.566	0.511	0.713	1.143
7893	chr19	55939341	55944057	+	0	NA	Intergenic	Intergenic	46378	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	3.116	nan	0.631	1.134	1.564	0.977	3.169	6.494	2.453	1.897	1.792	3.054	1.888	3.119	nan	2.775	2.166	2.416	0.309	0.721	0.312	0.328	0.315	0.218	2.613
10969	chr4	153543532	153559554	+	0	NA	Intergenic	L1M4|LINE|L1	-68713	NM_001099299	230959	Mm.318874	NM_001099299	ENSMUSG00000039546	Ajap1	Gm573	adherens junction associated protein 1	protein-coding	2.078	0.463	0.266	5.232	4.611	2.242	5.719	3.674	2.603	4.476	1.016	0.742	3.813	6.511	5.747	6.321	2.173	4.723	1.016	0.587	0.563	1.476	0.506	0.379	7.134
14425	chr8	88012715	88014566	+	0	NA	Intergenic	ORR1G|LTR|ERVL-MaLR	-54045	NM_033327	94187	Mm.23452	NM_033327	ENSMUSG00000045333	Zfp423	Ebfaz|Roaz|Zfp104|Znf423|ataxia1|mKIAA0760|nur12	zinc finger protein 423	protein-coding	2.465	0.691	0.491	1.536	2.861	2.383	1.703	7.703	3.769	3.025	1.973	1.491	3.194	4.010	3.472	6.570	5.954	4.566	nan	0.508	0.573	1.058	1.176	0.882	3.876
9815	chr3	133263027	133265465	+	0	NA	Intergenic	L1Md_F3|LINE|L1	-29357	NM_029953	77669	Mm.98630	NM_029953	ENSMUSG00000040969	Arhgef38	9130221D24Rik|D630013G24Rik	Rho guanine nucleotide exchange factor (GEF) 38	protein-coding	1.694	nan	0.699	1.251	1.153	0.445	nan	1.805	1.548	1.867	7.664	4.150	2.583	2.658	2.195	2.013	1.989	2.286	1.130	0.610	0.527	0.565	0.864	0.692	1.456
329	chr1	76026283	76030098	+	0	NA	Intergenic	Intergenic	-460943	NR_038012	620079	Mm.378379	NR_038012	ENSMUSG00000100553	Gm17751	-	predicted gene, 17751	ncRNA	6.195	0.472	0.273	3.040	3.203	1.918	7.890	2.693	4.512	6.619	1.315	0.758	7.878	6.152	5.893	12.744	7.449	6.225	nan	nan	0.475	0.475	nan	0.447	5.021
525	chr1	121535290	121541427	+	0	NA	Intergenic	Lx8|LINE|L1	-9893	NM_010483	15564	Mm.4833	NM_010483	ENSMUSG00000050534	Htr5b	5-Ht5b	5-hydroxytryptamine (serotonin) receptor 5B	protein-coding	6.470	0.598	0.494	2.864	3.576	3.043	5.658	4.019	3.876	3.263	2.082	1.525	5.255	5.177	3.611	5.789	6.424	5.207	1.276	1.046	0.502	0.965	1.374	1.015	3.275
8064	chr2	28979892	28981861	+	0	NA	intron (NM_001166705, intron 3 of 5)	intron (NM_001166705, intron 3 of 5)	-64436	NM_001164186	54422	Mm.21390	NM_019446	ENSMUSG00000026805	Barhl1	Dres115|MBH2	BarH-like 1 (Drosophila)	protein-coding	7.083	11.452	3.747	7.607	2.960	2.287	6.485	7.463	nan	7.654	4.577	3.780	7.590	7.054	8.235	10.267	7.484	7.078	5.458	2.026	2.121	6.232	2.327	4.150	12.509
787	chr1	161658014	161661057	+	0	NA	Intergenic	L1MC4a|LINE|L1	128960	NM_001205243	14103	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	0.644	0.310	0.345	0.685	0.313	0.068	0.348	0.232	nan	0.531	0.324	0.230	0.190	0.287	0.239	nan	0.514	0.326	5.488	2.948	2.171	5.692	5.354	3.820	0.464
27	chr1	13863591	13868038	+	0	NA	Intergenic	URR1B|DNA|hAT-Charlie	-78885	NR_004447	433273	Mm.304088	NR_004447	ENSMUSG00000097711	Gm5523	EG433273	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	1.759	0.596	0.585	0.891	5.726	4.462	1.543	1.271	1.562	1.185	2.774	1.897	0.632	0.950	1.094	0.906	1.147	1.561	0.687	0.868	0.799	0.379	0.844	1.047	0.636
12454	chr6	91058033	91067999	+	0	NA	intron (NM_018815, intron 14 of 39)	intron (NM_018815, intron 14 of 39)	53810	NM_018815	54563	Mm.28162	NM_018815	ENSMUSG00000030091	Nup210	9830001L10|AI836801|Pom210|gp190|gp210	nucleoporin 210	protein-coding	2.797	14.719	7.198	nan	1.723	0.766	1.206	1.341	1.755	2.791	0.981	0.696	1.245	1.929	1.975	2.782	1.996	nan	4.955	4.161	3.003	6.684	4.978	3.959	2.581
11374	chr5	77576577	77585473	+	0	NA	Intergenic	Intergenic	115537	NR_131050	69370	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	5.173	0.734	0.486	3.412	5.102	2.970	4.671	5.578	3.250	5.315	4.075	1.160	5.341	7.734	4.554	nan	3.346	nan	0.408	0.543	0.444	0.502	0.470	0.517	3.459
3909	chr13	28848697	28851663	+	0	NA	intron (NR_045053, intron 2 of 8)	B1_Mur2|SINE|Alu	35242	NR_045054	72518	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	6.536	2.273	1.672	3.928	3.874	1.884	7.493	7.441	2.659	2.982	3.208	2.317	3.968	6.704	5.474	5.384	3.801	3.773	1.621	2.968	1.920	2.235	3.336	3.032	6.167
12126	chr6	31209914	31215756	+	0	NA	intron (NR_110469, intron 1 of 3)	intron (NR_110469, intron 1 of 3)	5639	NR_110470	232685	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	4.640	1.407	0.753	3.452	3.999	2.451	6.817	8.225	3.266	3.253	2.030	1.359	5.537	5.356	7.552	8.903	5.608	6.716	nan	0.367	0.486	1.050	0.403	0.346	4.778
13832	chr7	139984379	139986127	+	0	NA	intron (NM_007403, intron 18 of 23)	intron (NM_007403, intron 18 of 23)	1621	NR_106029	102465643		NR_106029	ENSMUSG00000099092	Mir7062	Gm27339|mmu-mir-7062	microRNA 7062	ncRNA	5.206	4.445	1.061	4.387	3.833	2.088	2.280	4.643	3.439	3.387	5.994	1.723	2.651	3.345	2.571	4.040	2.453	5.704	0.705	1.072	0.387	0.895	0.643	0.441	3.837
5255	chr15	62897442	62901931	+	0	NA	Intergenic	Intergenic	579922	NR_045279	432958	Mm.255105	NR_045279		Gm20740	-	predicted gene, 20740	ncRNA	3.400	0.856	0.347	nan	1.398	1.390	7.262	6.511	nan	2.635	2.370	2.151	8.908	4.264	6.518	4.017	4.000	3.760	0.922	0.442	0.384	0.816	0.444	0.310	1.151
1866	chr10	127972664	127974090	+	0	NA	Intergenic	RLTR25B|LTR|ERVK	34131	NM_013786	27400	Mm.26719	NM_013786	ENSMUSG00000025396	Hsd17b6	17betaHSD9|Hsd17b9|Rdh8	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding	5.340	8.899	5.583	4.999	4.099	4.516	4.026	3.697	3.940	3.691	3.267	2.600	3.679	4.281	4.246	3.800	4.856	4.305	2.625	5.551	5.959	3.777	6.704	7.596	3.505
5216	chr15	59240675	59246797	+	0	NA	Intergenic	L1M4|LINE|L1	-63212	NR_045613	100416830	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	4.508	1.747	1.094	nan	2.467	0.689	6.021	7.906	3.688	3.318	4.671	3.063	6.474	5.516	6.188	4.144	3.836	4.947	3.710	1.661	0.757	4.480	2.516	1.244	3.648
3736	chr12	112590368	112593265	+	0	NA	intron (NM_198411, intron 1 of 22)	MTD|LTR|ERVL-MaLR	3032	NM_198411	70435	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	7.691	1.068	0.365	4.316	6.125	3.951	8.128	7.398	3.534	3.538	5.458	4.031	7.368	7.368	7.342	9.737	7.174	7.203	0.885	1.201	0.963	0.971	0.877	0.532	12.149
8825	chr2	153060320	153068644	+	0	NA	Intergenic	Intergenic	-1473	NM_145536	228788	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	7.987	7.257	2.713	6.041	3.359	1.677	7.415	8.781	4.284	5.363	3.567	3.035	7.878	7.437	8.524	10.208	8.194	8.210	nan	2.089	1.714	3.820	2.753	2.354	11.323
1310	chr10	58433620	58437289	+	0	NA	Intergenic	(TTTA)n|Simple_repeat|Simple_repeat	-11398	NM_011240	19386	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	4.480	0.708	0.245	2.440	1.294	0.649	4.015	1.177	2.402	3.249	0.597	0.296	3.111	3.439	2.925	4.431	3.024	6.025	nan	0.502	0.203	0.554	0.302	0.158	5.730
8746	chr2	145683203	145690926	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-14131	NR_033220	408057	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	10.049	1.477	0.571	8.093	6.227	3.530	8.462	10.784	6.327	8.792	6.835	2.223	11.197	11.398	8.535	11.285	8.775	10.089	nan	1.559	1.247	2.036	1.195	0.878	12.812
5901	chr16	22377329	22381362	+	0	NA	Intergenic	Intergenic	60225	NM_023794	104156	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	3.268	0.672	0.694	2.442	2.357	2.046	1.845	1.799	3.086	5.302	0.529	0.719	5.256	5.543	2.914	5.428	4.515	3.724	0.418	0.633	0.454	0.621	0.501	0.731	5.215
15391	chr9	95714998	95716255	+	0	NA	intron (NM_001311123, intron 8 of 11)	L1MEc|LINE|L1	34732	NM_001311123	22063	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	2.517	0.797	0.550	1.272	1.220	0.424	1.983	2.644	2.164	1.837	0.748	2.521	3.014	3.488	2.206	2.267	1.061	3.364	0.389	0.307	0.135	0.451	0.233	0.053	1.174
3459	chr12	77895234	77897275	+	0	NA	Intergenic	Intergenic	-330401	NM_172952	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	7.435	0.239	0.385	2.141	2.093	0.786	2.783	4.993	2.776	3.113	5.871	3.570	3.388	4.166	4.102	4.559	2.926	4.544	2.729	0.751	0.645	2.098	3.397	1.925	6.309
2115	chr11	45618010	45620287	+	0	NA	Intergenic	Intergenic	-188935	NR_045876	100009664	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	4.784	2.437	1.976	1.446	4.777	3.864	4.163	8.228	3.658	3.165	3.117	3.626	3.723	5.542	2.727	2.316	3.158	3.727	nan	2.086	1.409	nan	nan	0.941	1.730
4703	chr14	56661942	56663141	+	0	NA	Intergenic	RMER4A|LTR|ERVK	-5707	NM_023773	75339	Mm.152466	NM_023773	ENSMUSG00000079184	Mphosph8	1500035L22Rik|4930548G07Rik|AU040635	M-phase phosphoprotein 8	protein-coding	2.114	nan	0.073	0.826	0.784	0.599	2.980	5.648	3.158	3.065	5.006	1.651	1.839	2.665	3.593	2.651	1.304	3.733	3.342	0.894	0.307	0.300	3.595	1.674	1.729
6512	chr17	30136583	30138190	+	0	NA	intron (NM_148926, intron 3 of 4)	L1M3|LINE|L1	119149	NR_105839	102465223		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA	0.372	0.334	0.805	0.845	1.462	0.285	0.707	0.741	0.661	0.584	0.313	0.648	0.181	0.933	0.564	nan	1.039	0.519	2.903	3.568	5.056	2.826	5.402	7.245	0.501
7112	chr18	34386263	34387244	+	0	NA	Intergenic	RSINE1|SINE|B4	-13338	NM_007874	13476	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	3.499	1.214	0.775	2.396	2.032	1.070	1.500	2.259	4.592	3.325	0.744	1.716	6.321	3.167	2.183	3.979	2.494	4.304	1.347	0.840	0.494	1.583	0.851	1.202	3.601
4578	chr14	31718870	31721970	+	0	NA	intron (NM_001024604, intron 15 of 27)	intron (NM_001024604, intron 15 of 27)	79363	NM_025295	26363	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	6.603	1.500	0.843	5.470	5.273	2.340	5.697	7.186	6.375	8.318	2.486	1.401	5.546	9.955	5.017	6.614	6.048	5.333	2.087	2.101	1.145	nan	2.856	2.368	6.047
13068	chr7	29592094	29600322	+	0	NA	Intergenic	MMERVK10C-int|LTR|ERVK	-90748	NM_001081028	74206	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	9.030	10.521	4.375	8.917	6.433	4.538	9.669	11.274	5.616	8.652	7.356	4.591	9.007	10.374	9.710	9.261	7.672	8.635	4.468	3.234	4.468	4.897	3.545	4.190	11.662
4489	chr14	18682464	18683764	+	0	NA	intron (NM_144839, intron 3 of 5)	L1Md_F2|LINE|L1	210513	NM_144839	218793	Mm.23551	NM_144839	ENSMUSG00000058317	Ube2e2	BC016265	ubiquitin-conjugating enzyme E2E 2	protein-coding	2.639	0.420	0.200	1.228	1.106	0.635	2.678	5.077	1.755	1.340	0.368	0.557	2.894	2.866	3.176	2.470	1.542	2.911	1.181	0.842	0.521	nan	0.523	0.286	1.355
3035	chr11	117209867	117212337	+	0	NA	intron (NM_001113486, intron 1 of 11)	intron (NM_001113486, intron 1 of 11)	11441	NM_001113486	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	4.754	12.320	3.103	4.936	1.671	0.753	1.761	2.195	2.059	3.079	1.959	1.070	1.565	2.258	2.636	2.614	1.335	3.079	1.149	nan	1.059	0.990	0.368	0.241	4.135
6306	chr17	5976017	5979346	+	0	NA	intron (NM_001113352, intron 2 of 25)	intron (NM_001113352, intron 2 of 25)	2095	NM_011523	20975	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	11.747	14.730	3.332	9.761	3.686	1.710	13.341	12.058	6.080	8.606	9.455	5.321	10.167	15.309	12.818	14.683	7.145	8.187	5.737	2.280	1.326	5.713	3.324	1.842	18.711
14676	chr8	122409026	122410801	+	0	NA	intron (NM_001029994, intron 10 of 17)	intron (NM_001029994, intron 10 of 17)	-12172	NM_145834	234836	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	4.213	1.174	0.770	2.224	3.130	2.093	4.977	6.669	3.270	2.817	5.514	7.808	5.447	4.515	4.850	4.120	4.025	3.317	5.399	3.883	6.107	8.859	3.698	3.850	4.202
6939	chr17	86948902	86950860	+	0	NA	Intergenic	RSINE1|SINE|B4	-1994	NM_029121	74915	Mm.159369	NM_029121	ENSMUSG00000053375	Atp6v1e2	4930500C14Rik|Atp6e1|E1	ATPase, H+ transporting, lysosomal V1 subunit E2	protein-coding	1.751	0.644	0.601	5.473	0.671	0.672	0.628	0.919	nan	1.497	1.127	0.582	0.980	1.354	1.347	1.591	0.951	2.484	0.787	0.969	0.931	1.062	0.674	1.011	1.238
15623	chr9	122095241	122097520	+	0	NA	Intergenic	Lx|LINE|L1	-20886	NM_001164572	20623	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	3.381	2.162	0.905	3.127	1.750	1.059	2.514	3.365	2.263	2.673	1.379	0.577	1.894	4.055	3.080	2.364	1.570	2.616	1.023	1.356	0.516	2.627	nan	0.486	2.918
14888	chr9	20970426	20972720	+	0	NA	intron (NM_010333, intron 1 of 1)	B4|SINE|B4	5220	NM_010333	14739	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	4.123	5.161	1.132	4.565	1.768	0.594	1.807	1.803	2.041	2.712	0.979	1.083	1.848	2.556	1.866	2.335	1.287	3.251	1.725	1.497	0.750	3.461	1.719	0.767	4.970
12865	chr6	146907080	146910529	+	0	NA	intron (NM_026221, intron 1 of 26)	MTE2b|LTR|ERVL-MaLR	20310	NM_026221	67533	Mm.103382	NM_026221	ENSMUSG00000016487	Ppfibp1	4632409B19Rik|AW214454|AW261454	PTPRF interacting protein, binding protein 1 (liprin beta 1)	protein-coding	2.931	0.937	0.516	2.713	1.820	0.997	3.611	4.550	3.055	2.830	1.996	1.340	5.375	5.113	3.876	5.012	2.712	5.002	2.221	nan	0.348	4.585	1.103	0.415	3.225
12691	chr6	124688120	124692474	+	0	NA	intron (NM_145130, intron 1 of 12)	RSINE1|SINE|B4	21881	NM_013536	14791	Mm.6390	NM_013536	ENSMUSG00000004268	Emg1	C2f|Grcc2f	EMG1 N1-specific pseudouridine methyltransferase	protein-coding	9.800	14.141	5.168	9.242	6.132	3.311	11.626	10.956	6.062	7.758	7.774	4.133	10.202	11.765	11.918	14.649	10.955	9.586	6.341	4.093	3.616	6.390	4.984	4.296	13.418
9074	chr2	173443765	173445625	+	0	NA	Intergenic	Intergenic	-77897	NM_028158	72221	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	2.155	0.340	0.311	1.827	2.279	2.716	1.176	1.413	1.921	1.901	0.930	0.291	1.806	4.075	1.808	3.351	2.727	4.428	1.170	1.052	0.230	0.594	0.993	0.251	nan
769	chr1	157658290	157660843	+	0	NA	Intergenic	Intergenic	133396	NM_001159986	89867	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	7.235	5.998	1.632	7.375	3.156	1.601	2.838	4.364	4.332	6.451	6.479	4.889	4.198	5.130	4.175	6.837	3.370	5.153	nan	1.973	1.040	3.504	nan	2.508	8.439
1181	chr10	24164207	24168738	+	0	NA	intron (NM_016797, intron 2 of 9)	intron (NM_016797, intron 2 of 9)	17155	NM_016797	53331	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	3.197	0.876	0.344	1.993	0.511	0.225	1.647	1.700	2.084	1.757	7.011	2.055	1.753	1.999	2.254	1.645	1.487	1.730	0.873	0.601	0.189	0.816	0.374	0.268	1.650
8956	chr2	163952686	163956841	+	0	NA	Intergenic	Intergenic	-36080	NM_183023	241770	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	6.032	10.695	7.478	1.309	2.360	0.970	5.258	4.735	3.284	3.037	1.119	0.904	5.048	nan	3.224	5.892	7.307	4.118	nan	1.186	1.028	0.693	0.947	0.827	nan
15706	chrX	34353174	34358006	+	0	NA	Intergenic	Intergenic	-194006	NM_001243001	100042168	Mm.489575	NM_001243001	ENSMUSG00000078218	Btbd35f3	Gm3706	BTB domain containing 35, family member 3	protein-coding	3.093	0.511	0.230	2.614	3.184	2.731	2.096	4.905	2.913	3.878	2.015	1.931	3.335	4.805	2.980	3.890	3.224	2.841	2.583	1.817	1.576	2.650	2.412	2.304	2.437
12544	chr6	99935755	99937030	+	0	NA	Intergenic	Intergenic	-210000	NM_001170419	50501	Mm.87365	NM_015768	ENSMUSG00000030069	Prok2	Bv8|PK2|Prok1	prokineticin 2	protein-coding	1.943	0.760	0.378	2.081	0.881	0.342	2.611	1.897	2.954	4.903	0.947	0.191	2.790	4.026	1.627	3.528	2.613	3.644	nan	nan		1.078	0.886	0.514	3.425
5549	chr15	86049539	86051800	+	0	NA	Intergenic	B3|SINE|B2	-7026	NM_172611	223752	Mm.24442	NM_172611	ENSMUSG00000035900	Gramd4	9930016O13	GRAM domain containing 4	protein-coding	6.824	3.192	0.819	9.117	2.512	0.907	1.985	2.137	3.307	4.543	2.017	1.048	1.400	3.856	3.008	3.295	1.944	5.207	nan	1.376	0.665	nan	0.769	0.613	4.765
6009	chr16	32702992	32705769	+	0	NA	Intergenic	(CCAA)n|Simple_repeat|Simple_repeat	31226	NM_001289443	51789	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	5.716	1.819	0.976	3.454	2.692	1.629	9.289	6.899	4.126	3.519	3.136	1.543	8.064	5.131	5.776	7.890	6.947	5.049	2.178	1.550	1.685	2.008	2.748	3.006	6.409
7962	chr2	11296815	11300757	+	0	NA	intron (NM_008859, intron 16 of 17)	MTC|LTR|ERVL-MaLR	-40703	NR_040369	100503147	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	OTTMUSG00000011311	predicted gene 13293	ncRNA	11.762	4.050	3.754	4.004	5.298	4.182	9.389	11.076	5.357	5.526	4.955	2.481	9.047	6.630	5.829	7.373	9.027	6.637	0.900	1.735	2.081	0.732	1.425	1.629	6.978
803	chr1	163197471	163200903	+	0	NA	Intergenic	Intergenic	-113517	NM_030071	78258	Mm.78368	NM_030071	ENSMUSG00000071890	Mroh9	4921528O07Rik|Armc11	maestro heat-like repeat family member 9	protein-coding	9.978	0.954	0.683	6.207	9.459	7.195	3.252	6.875	7.741	8.619	4.690	3.433	7.595	10.087	nan	6.713	8.150	7.023	0.683	0.924	1.143	nan	nan	0.892	4.273
6027	chr16	33872266	33874048	+	0	NA	intron (NM_010580, intron 3 of 14)	intron (NM_010580, intron 3 of 14)	43492	NM_001145884	16419	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	1.386	0.648	0.441	1.849	1.026	0.626	4.569	5.488	1.237	1.445	6.407	2.981	4.583	3.671	2.144	2.564	1.592	1.582	1.250	0.519	0.344	1.316	0.941	0.485	2.962
2559	chr11	85046494	85049479	+	0	NA	intron (NM_001029934, intron 11 of 33)	L1Md_F2|LINE|L1	90232	NM_007607	12351	Mm.1641	NM_007607	ENSMUSG00000000805	Car4	AW456718|Ca4	carbonic anhydrase 4	protein-coding	10.272	10.511	4.886	10.785	9.064	6.140	8.605	9.183	7.484	10.623	8.224	5.727	7.177	10.484	8.923	10.316	8.489	9.183	6.648	5.488	5.600	nan	6.452	7.537	nan
4133	chr13	52161953	52163945	+	0	NA	Intergenic	MTE2b|LTR|ERVL-MaLR	66208	NR_045061	74050	Mm.84860	NR_045061		4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	2.499	2.083	1.123	2.596	2.048	0.601	2.464	2.196	1.875	1.882	0.953	0.339	2.582	3.736	2.917	2.867	1.165	4.038	1.195	nan	0.666	2.176	0.712	0.604	2.649
4796	chr14	67529071	67530666	+	0	NA	Intergenic	Intergenic	-132126	NR_045961	73977	Mm.414915	NR_045961	ENSMUSG00000093472	4930438E09Rik	-	RIKEN cDNA 4930438E09 gene	ncRNA	0.204	0.403	0.258	0.210	0.180	0.154	0.086	0.163	0.041	0.453	0.135	0.065	0.076	0.162	0.304	0.362	0.128	0.176	4.197	1.396	1.984	4.132	2.132	4.199	0.339
5890	chr16	21493312	21495544	+	0	NA	intron (NM_001285893, intron 20 of 46)	intron (NM_001285893, intron 20 of 46)	71310	NM_001285894	209018	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	0.975	6.783	8.299	0.343	1.005	0.162	0.565	0.658	0.482	nan	0.338	0.318	0.212	0.429	0.462	nan	0.774	0.637	0.700	0.906	0.824	0.517	1.257	1.372	0.756
9905	chr4	6855628	6865371	+	0	NA	intron (NM_145711, intron 1 of 8)	intron (NM_145711, intron 1 of 8)	130224	NM_145711	252838	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	1.553	7.544	3.904	1.168	1.052	0.633	0.696	nan	1.696	1.134	0.411	0.918	1.242	0.925	1.189	1.265	1.235	2.233	1.863	nan	0.919	1.961	1.142	0.826	0.950
8070	chr2	29545929	29548336	+	0	NA	Intergenic	Intergenic	-71838	NR_105753	102465170		NR_105753	ENSMUSG00000098539	Mir133c	Gm27865|mmu-mir-133c	microRNA 133c	ncRNA	2.891	8.299	4.976	1.925	2.147	1.223	1.663	2.061	nan	1.790	1.930	0.507	1.514	2.162	1.884	3.310	2.443	2.625	0.954	0.517	0.609	0.801	0.333	0.274	4.339
14890	chr9	21131746	21138662	+	0	NA	Intergenic	Intergenic	-3929	NM_001205312	54721	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	4.979	7.126	4.581	4.542	3.691	2.944	2.846	2.385	4.228	4.678	3.156	1.471	2.630	3.925	3.059	3.738	2.207	4.532	0.750	1.508	2.267	0.843	1.060	1.133	5.977
1245	chr10	41826642	41828544	+	0	NA	intron (NM_001162908, intron 1 of 9)	intron (NM_001162908, intron 1 of 9)	17019	NM_001162908	140742	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	2.296	0.713	0.710	1.922	4.385	2.277	3.237	5.255	2.795	3.654	3.564	1.300	3.130	6.481	2.759	2.960	2.147	3.660	1.054	0.778	0.803	0.655	1.171	0.805	3.058
7596	chr19	12867377	12874088	+	0	NA	Intergenic	L1_Mus1|LINE|L1	8955	NM_146702	258697	Mm.223132	NM_146702	ENSMUSG00000046272	Olfr1444	MOR202-4	olfactory receptor 1444	protein-coding	8.103	12.434	6.380	7.184	5.041	2.325	6.243	7.138	nan	8.662	4.808	3.260	5.685	7.923	6.333	nan	7.629	6.965	2.201	2.837	1.813	2.812	1.891	2.037	8.520
5587	chr15	96133666	96140141	+	0	NA	Intergenic	Intergenic	-45897	NR_028311	100043335	Mm.247464	NR_028311		Gm4371	EG667874|Gm8854	eukaryotic translation initiation factor 3, subunit I pseudogene	pseudo	3.897	1.133	0.676	2.447	0.947	0.687	4.261	4.926	2.990	2.679	1.077	0.855	7.126	2.946	3.443	4.430	4.872	4.427	2.242	1.111	0.955	1.304	2.460	1.571	2.217
6004	chr16	32520112	32525682	+	0	NA	Intergenic	Intergenic	26616	NM_199309	245308	Mm.76859	NM_199309	ENSMUSG00000052363	Zdhhc19	Gm1744|Gm616	zinc finger, DHHC domain containing 19	protein-coding	3.340	1.810	0.707	2.272	2.590	1.289	4.369	5.967	2.967	3.512	1.339	1.701	4.297	5.802	6.256	7.131	5.369	3.903	3.782	2.039	1.745	3.303	nan	3.866	5.592
6301	chr17	5261123	5262310	+	0	NA	intron (NM_001085355, intron 5 of 19)	intron (NM_001085355, intron 5 of 19)	157051	NM_175349	106557	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	4.442	1.413	0.444	2.550	1.434	0.443	2.100	2.758	3.358	2.784	0.503	0.940	3.922	3.902	1.801	4.391	1.364	5.943	5.245	0.917	0.804	3.777	3.812	1.484	3.571
7273	chr18	58094883	58100226	+	0	NA	intron (NM_010181, intron 15 of 64)	intron (NM_010181, intron 15 of 64)	112372	NM_010181	14119	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding	nan	nan	0.371	nan	0.591	0.172	3.215	nan	2.764	2.405	0.545	0.401	nan	1.771	2.715	4.810	3.683	1.701	nan	0.372	0.236	nan	0.492	0.233	nan
1388	chr10	67709617	67713498	+	0	NA	Intergenic	ORR1D1|LTR|ERVL-MaLR	-162602	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	10.943	4.398	2.078	5.100	6.876	4.851	4.983	5.957	6.053	6.239	6.762	4.635	6.977	7.644	5.657	6.213	7.322	nan	2.164	2.692	2.804	2.406	1.632	1.455	4.386
1676	chr10	98376054	98379722	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-26021	NR_045179	667438	Mm.414522	NR_045179		Gm8633	EG667438	predicted gene 8633	ncRNA	9.767	11.977	3.077	12.503	5.044	3.783	6.905	8.066	5.698	15.078	7.922	6.305	6.926	8.423	9.679	10.288	7.484	9.662	5.688	2.250	4.344	6.234	3.493	6.715	15.208
15449	chr9	103087571	103089779	+	0	NA	TTS (NM_033314)	TTS (NM_033314)	-23399	NM_173781	270192	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	1.765	0.637	0.723	2.129	0.997	0.649	1.222	1.025	nan	nan	0.436	0.675	1.822	4.205	1.301	nan	1.082	2.900	0.885	0.673	0.611	2.089	0.947	0.884	nan
11327	chr5	68232920	68239777	+	0	NA	Intergenic	URR1B|DNA|hAT-Charlie	204513	NM_001018019	433899	Mm.332422	NM_001018019	ENSMUSG00000068082	Grxcr1	Tg(Eno2-Gabrb3)0370Brll|pi|tde	glutaredoxin, cysteine rich 1	protein-coding	6.084	9.026	3.932	7.038	4.181	2.110	6.413	4.379	5.727	7.149	2.663	3.054	6.855	6.766	7.917	8.658	5.389	8.314	5.210	3.771	1.962	5.834	5.207	3.398	7.868
346	chr1	78806074	78810281	+	0	NA	Intergenic	Intergenic	-8772	NM_021342	57814	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	2.530	1.184	0.607	1.648	1.185	0.702	1.706	5.947	1.222	1.398	2.519	1.337	3.376	2.917	1.183	nan	1.334	nan	nan	nan	0.374	1.536	nan	0.658	nan
12138	chr6	32476397	32479270	+	0	NA	intron (NM_175750, intron 3 of 31)	MLT1D|LTR|ERVL-MaLR	-33308	NR_040277	319849	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	4.411	0.687	0.409	2.750	4.754	2.313	8.674	7.512	3.708	5.012	1.198	1.076	6.154	7.611	5.742	9.238	6.886	4.566	nan	0.862	0.299	0.403	0.506	0.432	4.704
3085	chr11	119675824	119680011	+	0	NA	intron (NM_028898, intron 3 of 33)	intron (NM_028898, intron 3 of 33)	75012	NM_028898	74370	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	2.370	nan	0.434	2.853	1.628	0.558	nan	nan	2.871	3.455	2.840	4.319	2.256	3.100	1.970	2.081	0.915	nan	4.457	nan	1.461	2.731	6.341	4.258	2.318
10664	chr4	133683454	133686224	+	0	NA	intron (NM_001080819, intron 18 of 19)	intron (NM_001080819, intron 18 of 19)	-12192	NM_001145956	230801	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	7.217	8.693	1.762	9.023	3.103	1.240	6.137	8.221	nan	7.231	9.921	3.780	6.486	9.156	7.915	9.314	4.810	7.159	3.015	1.786	2.209	4.775	nan	2.148	9.255
12999	chr7	25240987	25249695	+	0	NA	exon (NM_010155, exon 4 of 4)	exon (NM_010155, exon 4 of 4)	5417	NM_010155	13875	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	8.789	2.610	0.942	6.751	6.855	4.400	5.467	10.145	5.363	5.672	6.294	4.313	4.657	8.864	5.286	5.678	4.149	6.993	1.224	2.016	1.563	1.365	1.206	1.080	6.990
6503	chr17	29483114	29486495	+	0	NA	Intergenic	B1_Mur2|SINE|Alu	-6241	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	12.058	6.156	4.477	7.378	10.116	5.988	13.334	9.644	5.694	12.912	5.215	3.400	8.382	16.098	9.125	11.753	12.863	7.193	4.900	9.231	5.748	4.047	10.323	8.360	13.015
14876	chr9	16087221	16088415	+	0	NA	intron (NM_001080814, intron 2 of 24)	intron (NM_001080814, intron 2 of 24)	-213262	NM_145712	244701	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	2.037	0.922	0.653	1.294	0.702	0.333	2.145	2.539	1.691	2.134	1.115	0.851	2.241	3.261	2.669	2.138	1.061	3.355	1.813	1.023	0.240	1.779	0.384	0.069	1.706
15184	chr9	63602906	63609847	+	0	NA	intron (NM_025857, intron 1 of 9)	intron (NM_025857, intron 1 of 9)	3721	NM_025857	66939	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	5.603	5.702	1.916	5.340	2.563	1.700	6.291	8.374	4.483	8.169	5.180	4.887	6.342	7.862	nan	6.910	4.009	6.746	nan	1.185	1.374	1.640	0.762	0.714	10.968
9684	chr3	107815638	107821906	+	0	NA	Intergenic	Intergenic	-58303	NM_001113529	12977	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	7.580	1.913	0.624	4.936	2.661	1.276	8.463	8.026	3.698	3.992	4.376	2.053	7.475	9.021	nan	7.144	5.627	5.855	2.221	1.217	1.227	2.014	1.978	1.648	7.791
9810	chr3	132645762	132648041	+	0	NA	Intergenic	Intergenic	16710	NM_001270430	433653		NM_001270430	ENSMUSG00000091721	Gimd1	EG433653|Gm5549	GIMAP family P-loop NTPase domain containing 1	protein-coding	5.219	0.790	0.224	3.000	1.138	1.151	5.902	5.351	3.066	3.190	2.957	1.315	5.629	5.899	5.620	nan	4.125	5.621	0.611	0.406	0.376	0.590	0.341	0.375	6.171
650	chr1	136056192	136067024	+	0	NA	intron (NM_001081023, intron 2 of 43)	intron (NM_001081023, intron 2 of 43)	8707	NM_014193	12292	Mm.4418	NM_014193	ENSMUSG00000026407	Cacna1s	AW493108|Cav1.1|Cchl1a3|fmd|mdg|sj	calcium channel, voltage-dependent, L type, alpha 1S subunit	protein-coding	5.555	0.745	0.250	nan	3.285	1.882	5.430	3.447	2.762	3.609	0.655	0.771	3.910	nan	4.141	nan	5.559	3.867	0.560	0.764	0.623	0.742	0.769	0.537	nan
2202	chr11	53840439	53843068	+	0	NA	intron (NR_033332, intron 2 of 3)	intron (NR_033332, intron 2 of 3)	17503	NR_033332	622459	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115|OTTMUSG00000005650	predicted gene 12216	ncRNA	3.795	2.166	0.561	4.319	1.991	1.493	2.812	6.088	2.820	3.519	2.466	2.282	4.969	5.817	4.473	6.351	3.071	4.712	nan	0.802	1.077	3.979	2.321	1.703	nan
1154	chr10	20205671	20211106	+	0	NA	promoter-TSS (NM_001101561)	promoter-TSS (NM_001101561)	-51	NM_001101561	621697	Mm.440587	NM_001101561		Rpl32l	EG621697|Gm6251	ribosomal protein L32-like	protein-coding	4.047	0.716	0.604	4.244	4.493	2.044	2.407	4.307	4.059	5.149	0.900	0.765	4.686	5.910	4.248	5.263	3.859	4.332	1.007	2.265	1.380	2.911	1.530	1.273	3.566
4635	chr14	47054911	47062955	+	0	NA	intron (NM_001037221, intron 4 of 12)	intron (NM_001037221, intron 4 of 12)	-10044	NM_001310544	74480	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	5.900	0.418	0.605	3.052	2.558	1.626	5.660	3.336	4.251	4.941	0.650	0.476	6.333	6.919	6.203	7.772	3.927	5.874	0.368	0.471	0.360	0.529	0.431	0.259	8.917
12463	chr6	91554989	91556408	+	0	NA	Intergenic	B3|SINE|B2	39663	NM_026309	67678	Mm.246693	NM_026309	ENSMUSG00000034192	Lsm3	1010001J12Rik|2610005D18Rik|6030401D18Rik|SMX4|USS2	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	1.404	0.536	0.596	nan	0.408	0.391	1.749	1.538	1.306	1.616	0.691	0.846	1.755	4.579	2.157	3.650	1.040	nan	nan	0.454	0.086	1.617	0.548	0.271	1.587
895	chr1	174012206	174014252	+	0	NA	intron (NM_172648, intron 6 of 6)	intron (NM_172648, intron 6 of 6)	18526	NM_172648	226695	Mm.425061	NM_172648	ENSMUSG00000054203	Ifi205	D3|D3cDNA|Ifi205a	interferon activated gene 205	protein-coding	15.375	10.366	3.531	8.330	5.501	2.859	9.415	9.325	6.290	7.623	7.557	5.053	9.649	10.848	9.510	13.360	10.091	8.803	5.746	5.261	1.897	4.551	5.132	3.265	12.983
7318	chr18	64424433	64425926	+	0	NA	Intergenic	Intergenic	63887	NM_007998	14151	Mm.1070	NM_007998	ENSMUSG00000024588	Fech	AI894116|Fcl|fch	ferrochelatase	protein-coding	0.330	0.377	0.522	0.313	0.128		0.250	1.636	0.361	0.431	0.172	0.361	0.279	0.354	0.227	0.338	0.537	0.250	6.888	2.538	5.541	5.824	9.126	9.219	0.444
5237	chr15	60652391	60657335	+	0	NA	Intergenic	Intergenic	-168102	NR_030696	320469	Mm.230853	NM_177166		9930014A18Rik	-	RIKEN cDNA 9930014A18 gene	ncRNA	9.744	3.182	0.472	9.776	2.363	1.042	12.499	15.191	6.557	9.836	5.133	3.813	14.823	9.292	14.892	13.293	9.754	12.429	7.949	2.689	2.054	8.175	4.024	3.462	17.729
1910	chr11	4101503	4106177	+	0	NA	intron (NM_144520, intron 9 of 11)	intron (NM_144520, intron 9 of 11)	-8409	NM_026443	67900	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	5.509	5.528	1.416	5.730	4.121	2.437	1.992	3.348	3.550	4.021	3.658	1.957	2.411	4.306	3.042	4.494	2.712	5.713	1.064	nan	1.129	0.910	1.180	0.927	3.644
2762	chr11	99059781	99062088	+	0	NA	Intergenic	Intergenic	19674	NM_010517	16010	Mm.233799	NM_010517	ENSMUSG00000017493	Igfbp4	AI875747|Deb2|IGFBP-4	insulin-like growth factor binding protein 4	protein-coding	6.057	nan	0.452	1.684	2.571	2.049	7.931	4.876	2.574	3.798	2.647	2.542	4.993	5.058	6.105	6.651	5.671	4.538	1.031	nan	1.084	1.017	nan	nan	6.208
3076	chr11	119146980	119148202	+	0	NA	exon (NM_172443, exon 12 of 12)	exon (NM_172443, exon 12 of 12)	6546	NR_105899	102465563		NR_105899	ENSMUSG00000098704	Mir6934	Gm27523|mmu-mir-6934	microRNA 6934	ncRNA	1.760	nan	0.171	2.457	0.462	0.756	4.037	2.757	1.242	2.245	2.119	0.398	3.587	3.752	3.039	3.309	1.206	3.229	0.982	nan	0.470	1.042	0.326	0.249	3.830
7885	chr19	55264763	55270563	+	0	NA	intron (NM_027976, intron 1 of 21)	intron (NM_027976, intron 1 of 21)	14294	NM_027976	433256	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	1.904	nan	0.572	3.631	1.890	0.930	5.453	3.278	6.031	9.159	0.976	1.615	2.130	3.289	3.444	6.451	1.963	3.083	0.579	0.643	0.399	0.933	0.900	0.705	3.361
3608	chr12	88313602	88316144	+	0	NA	Intergenic	Lx2|LINE|L1	6889	NR_003647	266459	Mm.312138	NR_003647		Gm5039	EG266459	eukaryotic translation initiation factor 1A pseudogene	pseudo	3.924	1.493	0.356	3.193	1.326	1.371	3.607	3.179	2.136	2.924	2.040	1.638	3.982	6.362	4.301	5.882	4.774	3.629	2.717	1.549	1.697	3.366	1.637	1.245	8.822
8633	chr2	126577309	126586257	+	0	NA	intron (NM_011978, intron 8 of 9)	intron (NM_011978, intron 8 of 9)	28759	NM_011978	26458	Mm.290044	NM_011978	ENSMUSG00000027359	Slc27a2	ACSVL1|FATP2|VLCS|Vlac|Vlacs	solute carrier family 27 (fatty acid transporter), member 2	protein-coding	3.514	0.724	0.488	2.547	1.615	0.822	3.628	1.775	3.993	4.119	0.533	0.536	6.948	4.732	4.082	7.077	6.343	4.094	nan	0.566	0.356	0.534	0.361	0.289	5.986
12340	chr6	82672980	82674721	+	0	NA	Intergenic	Intergenic	-20985	NM_025882	66979	Mm.195753	NM_025882	ENSMUSG00000030042	Pole4	2400007P05Rik|5830430F06Rik	polymerase (DNA-directed), epsilon 4 (p12 subunit)	protein-coding	2.805	0.763	0.089	2.778	1.752	0.816	3.214	1.254	1.821	2.410	0.721	0.512	2.293	4.193	2.960	7.230	3.093	4.677	0.648	0.578	0.358	0.546	0.209	0.290	5.081
10845	chr4	142731199	142735295	+	0	NA	Intergenic	Intergenic	402915	NR_105988	102465618		NR_105988	ENSMUSG00000106597	Mir7021	mmu-mir-7021	microRNA 7021	ncRNA	1.619	6.080	4.296	1.219	1.139	0.554	1.159	1.218	nan	1.064	0.406	0.889	0.426	0.840	1.104	1.167	1.100	nan	1.518	1.152	0.915	1.071	nan	0.832	0.755
7558	chr19	10174630	10176915	+	0	NA	Intergenic	Intergenic	-7116	NM_146094	76267	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	5.108	3.247	1.036	3.659	1.416	0.948	4.080	7.091	nan	3.661	7.842	2.836	4.095	5.157	4.582	6.568	7.358	5.527	3.570	3.329	3.019	7.499	5.720	4.769	11.817
13725	chr7	131819874	131821578	+	0	NA	Intergenic	PB1D10|SINE|Alu	-145734	NM_173410	233919	Mm.208740	NM_173410	ENSMUSG00000040125	Gpr26	9630036A11Rik|A730021D22	G protein-coupled receptor 26	protein-coding	3.436	0.353	0.384	1.868	0.891	0.563	3.771	nan	2.220	2.778	0.905	0.177	7.218	4.402	4.774	4.741	2.339	4.764	1.072	0.301	0.371	0.767	0.772	0.347	2.674
15111	chr9	57095127	57096821	+	0	NA	intron (NM_001110350, intron 5 of 20)	intron (NM_001110350, intron 5 of 20)	19598	NM_011378	20466	Mm.15755	NM_011378	ENSMUSG00000042557	Sin3a	AW553200|Sin3|mKIAA4126|mSin3A	transcriptional regulator, SIN3A (yeast)	protein-coding	2.172	0.882	0.111	1.514	1.136	0.325	2.832	4.021	2.320	2.769	1.526	0.788	2.804	3.786	2.593	3.832	1.415	3.046	1.602	0.416	0.120	1.767	1.270	0.796	3.820
9364	chr3	65692452	65693835	+	0	NA	intron (NM_001166659, intron 3 of 12)	intron (NM_001166659, intron 3 of 12)	26915	NM_001166659	624866	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	3.938	1.253	0.655	1.777	0.876	0.681	4.800	3.820	1.427	2.067	0.842	1.192	4.441	5.920	3.344	2.223	0.470	2.133	0.964	0.246	0.177	1.022	0.291		5.156
3264	chr12	32269479	32273874	+	0	NA	Intergenic	L1_Mur1|LINE|L1	-63027	NM_001146200	30955	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphoinositide-3-kinase, catalytic, gamma polypeptide	protein-coding	9.791	0.442	0.267	1.257	2.086	0.927	2.163	1.036	1.566	1.865	0.672	0.396	2.808	1.943	1.794	2.207	4.053	3.834	0.809	0.923	0.634	0.331	0.563	0.459	5.872
3402	chr12	71734016	71735171	+	0	NA	Intergenic	MER21C|LTR|ERVL	-96475	NM_026102	208846	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	5.851	0.729	0.670	1.159	0.743	0.213	3.905	1.861	2.397	2.108	5.345	1.926	3.564	3.913	5.971	5.639	3.450	4.666	0.702	0.366	0.106	1.362	0.373	0.081	9.249
12874	chr6	147634267	147639443	+	0	NA	Intergenic	Intergenic	-53386	NR_033636	100039727	Mm.396220	NR_033636	ENSMUSG00000085077	1700049E15Rik	Gm15761|OTTMUSG00000026044	RIKEN cDNA 1700049E15 gene	ncRNA	3.986	0.379	0.304	nan	4.525	1.770	5.989	4.774	2.963	3.976	1.107	0.892	5.757	8.114	7.432	7.636	4.576	5.014	1.163	nan	0.592	nan	0.626	0.334	4.458
6050	chr16	36067242	36072792	+	0	NA	intron (NM_027342, intron 1 of 4)	intron (NM_027342, intron 1 of 4)	1498	NM_027342	70186	Mm.212991	NM_027342	ENSMUSG00000003955	Fam162a	2310056P07Rik|HGTD-P	family with sequence similarity 162, member A	protein-coding	8.371	5.282	2.005	4.975	3.292	1.859	5.711	8.749	4.490	6.192	4.086	3.185	7.139	6.584	6.464	8.522	4.940	8.811	3.728	2.389	1.741	4.085	2.039	1.428	8.402
3501	chr12	81011314	81013568	+	0	NA	Intergenic	L1MB3|LINE|L1	-14367	NM_001146217	64075	Mm.273295	NM_022316	ENSMUSG00000021136	Smoc1	2600002F22Rik|AI848508|SRG	SPARC related modular calcium binding 1	protein-coding	5.599	2.731	0.566	7.232	3.121	1.165	2.290	2.424	5.375	6.692	4.718	3.392	4.407	5.856	4.733	4.878	4.022	7.412	1.069	1.388	0.924	2.086	0.807	0.661	8.277
14584	chr8	109673984	109685294	+	0	NA	intron (NM_028018, intron 4 of 9)	intron (NM_028018, intron 4 of 9)	13655	NM_028018	71955	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	6.342	2.094	1.386	4.635	6.770	5.039	4.233	6.151	4.313	5.643	2.079	1.514	7.501	8.516	5.787	6.697	6.870	6.021	1.548	1.764	1.780	nan	1.910	1.791	7.032
1982	chr11	11772208	11775473	+	0	NA	TTS (NM_009578)	TTS (NM_009578)	35122	NM_021891	60530	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	nan	1.299	0.483	1.410	0.483	0.334	0.666	0.679	0.728	0.649	0.427	0.282	0.445	0.574	0.927	1.206	0.753	1.654	2.838	nan	0.969	5.034	1.613	1.595	1.142
5226	chr15	59448874	59451528	+	0	NA	intron (NM_001164604, intron 3 of 4)	B1_Mur4|SINE|Alu	76003	NM_001164604	68501	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	3.169	3.148	1.409	1.921	2.211	1.079	11.801	5.059	nan	3.172	1.064	0.658	5.387	5.346	5.201	4.162	5.039	2.790	1.651	1.233	1.269	2.149	1.580	1.317	7.092
3423	chr12	74133466	74164805	+	0	NA	intron (NM_172804, intron 2 of 6)	Lx2B|LINE|L1	-135141	NR_030734	74284	Mm.287421	NR_030733	ENSMUSG00000071265	1700086L19Rik	1700006L05Rik|AU016007	RIKEN cDNA 1700086L19 gene	ncRNA	0.864	0.859	0.542	0.840	0.322	0.215	0.519	0.495	0.555	0.651	0.421	0.883	0.604	nan	0.593	nan	1.015	0.663	8.938	5.487	3.803	9.156	8.245	6.611	0.969
5980	chr16	30499194	30504275	+	0	NA	Intergenic	Intergenic	48844	NM_172614	224090	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	5.440	0.896	0.386	5.083	4.727	2.503	2.297	5.913	3.360	3.628	4.883	3.545	nan	6.475	3.957	5.049	2.713	5.980	1.711	1.833	1.738	5.128	nan	1.254	5.744
6539	chr17	31987508	32002993	+	0	NA	intron (NM_028902, intron 6 of 7)	intron (NM_028902, intron 6 of 7)	39258	NM_028902	74377	Mm.75856	NM_028902	ENSMUSG00000002076	Hsf2bp	4932437G14Rik	heat shock transcription factor 2 binding protein	protein-coding	5.286	4.378	1.745	7.098	5.185	2.905	4.815	5.112	5.850	10.306	6.846	3.460	4.084	7.703	4.309	6.556	4.498	6.460	3.592	3.543	2.615	6.409	3.525	2.972	6.819
12871	chr6	147209315	147217011	+	0	NA	Intergenic	MTB|LTR|ERVL-MaLR	32922	NR_033640	100039641	Mm.170402	NR_033640	ENSMUSG00000085600	E330012B07Rik	Gm15768|OTTMUSG00000026071	RIKEN cDNA E330012B07 gene	ncRNA	nan	0.992	0.411	nan	0.506	0.333	3.426	nan	1.510	nan	7.976	4.215	nan	1.891	5.080	nan	3.548	1.204	0.785	nan	0.417	nan	0.361	0.296	nan
6798	chr17	66472477	66473704	+	0	NA	Intergenic	RLTR23|LTR|ERV1	-23340	NM_001114098	68617	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding	5.462	11.947	4.658	6.214	2.969	2.777	8.692	5.904	4.464	6.005	4.436	3.236	5.482	5.618	7.925	8.877	7.627	5.598	6.552	3.144	3.412	5.227	6.370	6.244	10.699
4127	chr13	51980995	51982629	+	0	NA	Intergenic	Intergenic	-114929	NR_045061	74050	Mm.84860	NR_045061		4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	3.350	1.651	0.964	1.866	2.111	0.418	1.837	2.603	2.608	3.568	3.522	1.743	2.577	4.443	2.965	2.699	1.192	3.387	1.608	nan	0.908	1.684	1.481	0.977	1.894
15514	chr9	108995092	109002328	+	0	NA	intron (NM_173019, intron 1 of 13)	MTE2b|LTR|ERVL-MaLR	6808	NM_173019	270198	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	6.524	2.777	0.955	6.918	2.946	1.888	7.360	8.384	nan	8.837	6.476	3.180	7.330	10.342	8.201	9.971	4.332	8.660	4.647	3.058	2.135	4.878	5.291	4.763	15.475
8529	chr2	115878023	115902758	+	0	NA	intron (NM_001346047, intron 10 of 13)	intron (NM_001346047, intron 10 of 13)	174229	NM_001346044	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	2.026	1.605	1.196	1.864	1.412	0.776	0.986	0.658	1.042	1.326	0.585	0.490	nan	0.957	0.635	nan	1.130	1.273	10.116	5.696	3.972	5.279	11.028	8.645	nan
12358	chr6	83390015	83391559	+	0	NA	intron (NM_001347313, intron 4 of 11)	intron (NM_001347313, intron 4 of 11)	10315	NR_105793	102465194		NR_105793	ENSMUSG00000099045	Mir6374	Gm27292|mmu-mir-6374	microRNA 6374	ncRNA	7.237	4.677	3.003	5.349	6.571	4.408	12.047	9.726	3.481	6.656	6.453	3.392	4.716	10.367	4.551	6.508	7.931	4.229	6.023	7.334	5.938	3.608	13.794	10.270	7.113
8773	chr2	147790164	147812948	+	0	NA	Intergenic	RCHARR1|DNA|hAT-Charlie	90863	NR_046014	381384	Mm.259809	NR_046014	ENSMUSG00000051986	A530006G24Rik	Gm1003	RIKEN cDNA A530006G24 gene	ncRNA	2.405	0.475	0.477	1.311	1.260	0.738	2.923	2.821	1.867	1.712	0.479	1.151	2.119	2.232	2.699	3.265	2.202	2.563	nan	3.654	2.973	5.245	6.643	4.876	2.770
8167	chr2	34398680	34403353	+	0	NA	Intergenic	Intergenic	-5755	NM_001290625	227743	Mm.270866	NM_177345	ENSMUSG00000038696	Mapkap1	AI591529|D230039K05Rik|Sin1	mitogen-activated protein kinase associated protein 1	protein-coding	2.781	1.234	0.615	2.287	2.727	1.010	3.096	2.083	2.038	nan	1.181	1.980	3.216	3.101	4.013	3.176	2.850	5.251	2.892	1.642	1.015	4.745	1.990	1.194	3.383
2408	chr11	70500322	70501931	+	0	NA	Intergenic	B4|SINE|B4	-4148	NM_029360	75604	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	9.213	15.785	4.161	12.501	5.424	2.733	6.604	6.866	6.227	11.356	6.672	4.053	5.539	8.493	8.568	10.452	5.790	9.591	7.566	4.856	4.798	8.875	5.131	5.530	13.478
6569	chr17	34724084	34743935	+	0	NA	exon (NM_009780, exon 26 of 41)	exon (NM_009780, exon 26 of 41)	9888	NM_009780	12268	Mm.477109	NM_009780	ENSMUSG00000073418	C4b	C4|Ss	complement component 4B (Chido blood group)	protein-coding	8.988	7.644	3.018	5.718	5.149	2.680	10.919	6.303	3.534	6.734	3.465	1.921	6.372	11.927	6.705	9.006	6.904	6.652	2.940	3.079	2.195	2.836	3.644	2.549	13.583
7139	chr18	35930492	35933176	+	0	NA	Intergenic	Intergenic	-32996	NM_028707	74002	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	7.628	12.811	3.680	7.617	5.911	4.725	6.272	7.366	4.647	9.192	6.006	2.616	6.463	6.980	6.832	6.900	5.055	7.454	4.513	2.440	3.000	5.262	3.493	4.962	10.861
498	chr1	108609167	108611416	+	0	NA	Intergenic	L1_Mus3|LINE|L1	693032	NR_102307	319596	Mm.136054	NR_102306	ENSMUSG00000100457	D830032E09Rik	-	RIKEN cDNA D830032E09 gene	ncRNA	3.786	10.703	2.591	7.128	1.748	1.332	6.427	3.507	4.187	7.214	3.743	3.125	4.483	3.190	6.090	8.364	4.335	4.796	2.954	1.949	2.445	3.431	1.838	2.660	7.744
3520	chr12	81443651	81448288	+	0	NA	intron (NM_001309810, intron 3 of 4)	MYSERV6-int|LTR|ERVK	-23930	NM_009620	11498	Mm.408462	NM_009620	ENSMUSG00000072972	Adam4	AV274654|tMDCV	a disintegrin and metallopeptidase domain 4	protein-coding	3.296	1.068	0.769	2.898	5.354	4.649	1.908	1.850	3.127	2.461	4.362	1.644	1.554	2.399	2.448	2.167	1.750	3.221	0.867	1.193	0.893	1.042	0.711	0.752	2.967
8012	chr2	25035272	25038510	+	0	NA	intron (NM_146251, intron 21 of 34)	intron (NM_146251, intron 21 of 34)	-17488	NM_001177654	56876	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	6.042	5.959	1.978	8.309	2.145	0.959	4.644	8.497	nan	5.901	6.276	3.988	6.402	3.994	6.357	9.761	7.041	6.974	4.426	1.949	2.621	7.169	3.298	2.477	9.422
12957	chr7	19575913	19581549	+	0	NA	intron (NM_022409, intron 2 of 2)	intron (NM_022409, intron 2 of 2)	1444	NM_022409	63872	Mm.23310	NM_022409	ENSMUSG00000011267	Zfp296	2210018A16Rik|Znf296	zinc finger protein 296	protein-coding	3.559	2.897	1.121	2.401	1.262	0.699	4.209	4.274	1.639	2.921	0.722	0.880	1.210	1.815	4.547	5.395	5.261	3.648	2.690	1.936	1.118	2.448	2.570	1.924	5.528
4311	chr13	98132649	98134266	+	0	NA	intron (NM_012026, intron 2 of 35)	intron (NM_012026, intron 2 of 35)	72708	NM_012026	110596	Mm.252718	NM_012026	ENSMUSG00000021662	Arhgef28	9230110L08Rik|AI323540|D13Bwg1089e|RIP2|Rgnef|RhoGEF|Rhoip2|p190RhoGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding	2.633	0.589	0.361	1.069	1.099	0.305	3.841	4.065	2.654	2.178	5.281	1.620	3.425	2.332	4.712	5.018	2.183	3.854	1.178	0.624	0.189	1.368	0.687	0.686	3.265
10142	chr4	61937614	61944712	+	0	NA	Intergenic	B4A|SINE|B4	-105983	NM_008649	17844	Mm.445286	NM_008649	ENSMUSG00000058523	Mup5	Mup18	major urinary protein 5	protein-coding	6.392	nan	0.766	1.902	2.982	1.639	6.290	7.270	2.143	2.994	0.676	0.465	4.501	6.723	4.053	4.823	4.284	3.920	nan	1.212	0.987	2.024	1.840	1.404	5.334
9851	chr3	144229955	144239411	+	0	NA	Intergenic	Intergenic	-29428	NM_010723	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	6.021	3.578	1.070	5.199	2.684	1.607	6.233	3.086	4.330	6.144	3.952	1.903	7.672	7.595	6.708	6.372	4.757	7.448	2.674	1.502	1.518	2.817	1.632	1.816	7.050
15015	chr9	44214844	44216659	+	0	NA	intron (NM_007619, intron 1 of 15)	MERVL-int|LTR|ERVL	18295	NM_007619	12402	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	12.520	13.772	8.127	9.151	5.175	3.628	8.128	7.879	6.086	9.222	8.530	5.281	6.976	10.292	8.933	8.950	5.802	7.991	5.468	3.554	5.127	5.936	3.618	4.717	16.607
2028	chr11	22521461	22523166	+	0	NA	Intergenic	RMER16-int|LTR|ERVK	10030	NM_153596	103765	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	4.039	nan	0.460	2.916	2.035	0.575	1.635	2.163	3.151	3.009	3.538	2.014	3.897	4.590	3.419	5.479	2.888	5.827	0.932	0.407	0.072	0.789	0.382	0.165	4.036
7218	chr18	46620995	46622087	+	0	NA	Intergenic	Intergenic	23837	NM_010120	13664	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	5.275	1.087	0.456	1.559	1.467	1.203	4.402	7.012	2.549	2.026	1.057	0.611	4.889	3.718	4.466	4.419	4.973	3.957	0.733	0.387	0.894	0.734	0.318	0.647	6.786
8655	chr2	128551545	128553152	+	0	NA	Intergenic	Intergenic	-39993	NM_001310641	241634	Mm.297682	NM_001310641	ENSMUSG00000074812	Spdye4c	Gm355|SpeedyB3|SpyB3	speedy/RINGO cell cycle regulator family, member E4C	protein-coding	2.785	0.858	0.918	1.646	1.254	0.363	3.422	2.254	0.875	1.095	0.343	0.135	3.136	4.057	3.262	3.778	4.076	1.693	nan	1.132	0.369	0.384	0.464	0.344	2.322
15580	chr9	118909750	118913079	+	0	NA	Intergenic	B4A|SINE|B4	-15122	NM_133710	69274	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	5.442	1.392	0.431	5.326	1.267	0.937	5.427	4.791	3.060	3.590	5.365	2.091	5.663	4.777	4.412	6.691	2.453	6.280	0.847	0.529	0.692	0.994	nan	0.338	7.618
1606	chr10	93103322	93109207	+	0	NA	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-24668	NM_001347060	380654	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	1.780	0.777	0.579	3.273	1.603	0.954	0.537	0.766	1.441	2.564	nan	2.732	0.507	1.161	0.975	1.216	0.625	2.953	8.562	4.203	3.827	7.230	6.825	6.731	1.947
14401	chr8	86399620	86401212	+	0	NA	Intergenic	Intergenic	166174	NM_172912	244562	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding	2.015	0.849	0.566	5.759	1.271	0.745	1.958	1.402	4.321	11.044	0.744	0.666	2.965	3.178	3.233	3.153	0.624	5.218	3.500	1.753	1.328	6.194	1.771	1.502	3.753
6156	chr16	76538414	76541723	+	0	NA	Intergenic	Intergenic	-167019	NM_173440	268903	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	4.951	0.787	0.566	1.856	1.752	0.886	5.743	5.770	3.433	3.381	3.751	2.402	6.529	4.348	5.137	7.461	4.699	4.267	nan	0.525	0.321	0.949	0.539	0.480	2.661
10162	chr4	62355868	62358343	+	0	NA	intron (NM_001045528, intron 1 of 27)	PB1|SINE|Alu	3443	NM_001045528	338355	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	3.451	nan	0.947	3.775	1.659	0.649	nan	3.023	2.504	2.580	1.913	1.136	3.337	3.606	3.074	3.097	2.171	3.788	nan	1.140	0.792	2.090	0.818	0.765	5.461
8160	chr2	33321809	33324544	+	0	NA	intron (NM_001290570, intron 3 of 16)	intron (NM_001290570, intron 3 of 16)	48318	NM_001290570	241308	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	7.127	5.342	2.052	5.603	6.489	4.174	5.939	8.880	4.069	7.887	4.356	3.184	5.729	7.203	5.622	6.991	5.559	7.056	3.697	2.997	2.983	3.672	4.752	4.993	9.620
11616	chr5	116869015	116873901	+	0	NA	Intergenic	MTB|LTR|ERVL-MaLR	244535	NM_001122666	71954	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding	6.174	1.267	0.473	7.502	3.253	2.188	2.991	5.194	4.120	6.036	2.014	1.903	5.001	8.373	7.545	7.494	2.941	8.204	nan	nan	1.235	6.041	nan	2.441	8.754
9664	chr3	105804718	105809427	+	0	NA	Intergenic	Intergenic	-5691	NM_145541	109905	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein-1a	protein-coding	0.911	1.106	0.738	2.421	6.334	6.799	4.020	0.722	0.526	0.603	0.372	0.244	1.996	1.369	nan	0.809	1.931	0.975	0.607	0.735	1.047	0.269	0.671	1.091	0.639
3553	chr12	85533816	85535533	+	0	NA	Intergenic	Intergenic	60773	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	11.166	17.477	5.439	11.697	5.983	3.874	9.452	8.766	4.865	17.648	6.525	3.750	7.890	10.679	9.150	10.950	8.843	9.788	6.791	2.833	7.031	6.986	3.915	6.922	22.704
15233	chr9	66679033	66682479	+	0	NA	Intergenic	Intergenic	-32930	NM_178396	76459	Mm.277921	NM_178396	ENSMUSG00000032373	Car12	2310047E01Rik|AI314958|CA-XII|Ca12	carbonic anhydrase 12	protein-coding	5.254	2.015	1.201	2.605	1.506	0.742	1.435	1.812	2.364	2.946	2.033	0.782	1.473	3.165	nan	3.554	2.540	2.582	nan	1.076	0.804	1.578	1.036	0.684	3.891
1933	chr11	5429102	5431370	+	0	NA	intron (NM_001080924, intron 1 of 8)	RMER15|LTR|ERVL	14611	NM_001080924	407821	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	8.026	1.686	0.815	3.429	1.325	0.490	4.453	5.913	6.034	5.161	6.386	2.011	6.578	9.775	8.211	8.122	8.634	6.046	1.513	nan	0.700	1.505	1.110	0.350	5.815
4892	chr14	79685996	79688498	+	0	NA	Intergenic	MLT1G|LTR|ERVL-MaLR	-15673	NR_045060	73989	Mm.107775	NR_045060		4930452G13Rik	-	RIKEN cDNA 4930452G13 gene	ncRNA	1.841	0.904	0.470	2.523	3.179	2.126	1.861	2.656	2.332	3.026	0.531	0.497	2.393	4.265	2.687	1.870	1.135	2.872	0.442	0.479	0.539	0.383	0.587	0.199	1.646
15454	chr9	105695931	105698403	+	0	NA	intron (NM_001102607, intron 35 of 36)	intron (NM_001102607, intron 35 of 36)	54172	NM_001081309	75669	Mm.274830	NM_029380	ENSMUSG00000032571	Pik3r4	2210010O15Rik|C730038E05Rik|C85833|D9Ertd418e	phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 4, p150	protein-coding	5.392	0.456	0.544	1.398	1.249	0.794	5.501	1.556	2.647	nan	0.501	0.496	4.034	6.550	4.270	4.103	4.523	4.374	0.755	1.461	0.802	0.851	0.860	0.489	7.476
790	chr1	161983117	161991902	+	0	NA	3' UTR (NM_001038619, exon 21 of 21)	3' UTR (NM_001038619, exon 21 of 21)	-7873	NM_001204904	75368	Mm.108728	NM_001204904	ENSMUSG00000086277	4930558K02Rik	-	RIKEN cDNA 4930558K02 gene	protein-coding	3.969	4.105	1.972	5.009	5.333	2.703	3.446	2.141	nan	3.943	1.684	1.129	4.291	5.398	4.214	nan	3.088	5.342	nan	1.254	0.637	0.663	nan	0.432	3.265
2022	chr11	21135461	21143671	+	0	NA	intron (NM_023324, intron 2 of 6)	MTD|LTR|ERVL-MaLR	48242	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	8.388	7.999	3.574	8.231	9.074	6.607	5.343	6.496	5.712	10.403	6.854	4.059	6.028	8.313	5.136	6.616	6.888	7.231	4.160	4.200	4.075	4.532	3.371	4.047	6.834
10240	chr4	87312759	87316482	+	0	NA	Intergenic	L1Md_A|LINE|L1	-84080	NM_172426	76376	Mm.490487	NM_172426	ENSMUSG00000037996	Slc24a2	2810021B17Rik|6330417K15Rik|AI847460|Nckx2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	protein-coding	5.068	nan	1.128	4.159	2.977	2.134	2.064	nan	nan	6.777	3.775	2.236	3.454	3.744	3.262	4.805	3.480	nan	1.556	nan	0.603	7.657	1.375	0.930	nan
1122	chr10	18563899	18567764	+	0	NA	Intergenic	Intergenic	-19755	NM_019487	56016	Mm.35551	NM_019487	ENSMUSG00000019853	Hebp2	SOUL	heme binding protein 2	protein-coding	3.106	0.976	0.405	2.534	1.264	0.618	2.104	4.840	nan	3.610	9.203	3.638	4.124	3.867	4.563	4.933	3.140	4.149	1.395	0.682	0.358	2.166	0.620	0.395	nan
3551	chr12	85513458	85523063	+	0	NA	Intergenic	Intergenic	44359	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	9.580	9.346	3.595	8.749	5.944	2.949	5.175	7.815	5.058	7.331	4.607	3.379	6.518	10.935	7.187	9.019	7.000	8.015	4.324	2.840	2.196	5.472	2.365	2.095	13.886
14711	chr8	124191314	124193627	+	0	NA	Intergenic	Intergenic	-38924	NM_139272	108148	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	4.122	nan	0.449	6.397	3.268	3.185	nan	5.152	3.117	3.683	3.559	2.999	3.608	4.249	3.801	5.580	3.409	4.022	nan	1.094	1.884	nan	0.974	nan	5.580
5474	chr15	81658186	81659896	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-4848	NM_001289712	214669	Mm.280768	NM_145993	ENSMUSG00000022394	L3mbtl2	4732493N06Rik|M4mbt	l(3)mbt-like 2 (Drosophila)	protein-coding	2.131	nan	0.785	nan	2.577	2.370	1.543	2.349	1.234	nan	nan	0.785	2.612	4.407	1.548	1.473	1.871	1.834	0.921	0.574	1.329	nan	0.758	0.741	2.335
6100	chr16	45834943	45846331	+	0	NA	intron (NM_001252442, intron 1 of 18)	ORR1C2|LTR|ERVL-MaLR	3741	NM_153412	208177	Mm.211477	NM_153412	ENSMUSG00000033149	Phldb2	AV253284|C820004H04Rik|LL5b|LL5beta	pleckstrin homology like domain, family B, member 2	protein-coding	11.134	0.956	0.514	8.051	7.661	4.061	10.061	10.122	8.069	9.283	3.908	3.948	11.948	12.219	9.916	12.622	7.949	12.758	1.913	1.979	1.337	2.102	1.919	1.548	10.438
4643	chr14	47824640	47826041	+	0	NA	Intergenic	RMER20B|LTR|ERVK	-73524	NR_045959	73961	Mm.390702	NR_045959		4930447J18Rik	4930425M13Rik	RIKEN cDNA 4930447J18 gene	ncRNA	1.163	0.353	0.835	1.039	3.186	2.548	1.093	2.154	1.461	1.120	0.501	1.169	1.177	1.718	0.461	0.486	0.998	0.801	3.810	4.037	5.961	1.312	5.809	6.786	0.620
12205	chr6	48624158	48644359	+	0	NA	TTS (NR_027236)	TTS (NR_027236)	6091	NR_027236	243373	Mm.26678	NM_177737	ENSMUSG00000053297	AI854703	AI182503|D630044C04	expressed sequence AI854703	pseudo	2.562	15.218	8.287	3.245	1.868	0.983	1.824	2.095	1.665	1.811	0.913	0.751	0.839	1.376	1.950	1.971	1.445	nan	nan	1.901	0.947	0.655	0.727	0.378	1.523
11539	chr5	108376127	108380506	+	0	NA	Intergenic	Intergenic	-10057	NM_008806	18587	Mm.1372	NM_008806	ENSMUSG00000029491	Pde6b	Pdeb|r|rd|rd-1|rd1|rd10	phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide	protein-coding	6.209	2.737	0.914	4.006	2.555	2.097	1.953	2.696	3.597	3.674	3.343	2.144	3.034	5.614	3.618	4.404	3.392	4.827	nan	1.344	0.826	1.339	1.364	1.166	3.311
1053	chr1	195097056	195101401	+	0	NA	Intergenic	L1Md_T|LINE|L1	-6980	NM_010778	17221	Mm.12884	NM_010778	ENSMUSG00000016493	Cd46	Mcp	CD46 antigen, complement regulatory protein	protein-coding	4.155	1.736	0.681	4.810	3.252	1.691	4.843	4.961	3.482	5.471	2.984	1.161	4.958	6.120	5.024	nan	6.614	2.565	3.750	3.250	2.374	4.906	nan	2.690	6.053
14979	chr9	41865235	41866708	+	0	NA	Intergenic	B4A|SINE|B4	258318	NM_011436	20660	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	3.309	1.234	0.776	0.786	0.757	0.824	1.776	1.105	1.359	1.297	0.610	0.401	1.970	2.520	1.811	1.679	nan	1.230	nan	0.832	0.468	0.494	0.594	0.549	3.297
11800	chr5	136193502	136198113	+	0	NA	intron (NM_025774, intron 2 of 5)	B1_Mur4|SINE|Alu	3147	NM_025774	66801	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	0.863	9.593	7.311	1.192	1.970	1.655	1.252	1.245	0.914	0.913	2.852	2.414	0.413	1.288	0.965	1.006	0.957	0.713	1.004	1.056	0.791	0.676	nan	0.918	0.976
462	chr1	94075585	94080937	+	0	NA	Intergenic	Intergenic	-25708	NM_008798	18566	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	nan	nan	1.436	5.986	2.192	1.252	3.830	nan	2.992	6.821	6.779	2.499	4.248	4.168	4.707	nan	3.622	nan	nan	1.431	1.822	nan	1.967	2.585	nan
414	chr1	90173588	90177596	+	0	NA	Intergenic	B4A|SINE|B4	-22191	NM_029122	74918	Mm.317517	NM_029122	ENSMUSG00000026301	Iqca	4930465P12Rik|4930585L22Rik|BB288505|Iqca1	IQ motif containing with AAA domain	protein-coding	6.436	8.355	4.008	8.757	4.070	1.747	15.567	6.489	3.203	3.563	2.693	1.678	10.848	7.767	12.055	10.135	8.321	6.197	2.299	1.046	0.688	nan	1.125	0.961	5.731
8074	chr2	29682100	29683375	+	0	NA	intron (NM_001039087, intron 3 of 25)	B1_Mur2|SINE|Alu	63017	NM_001039086	107746	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	11.339	11.006	4.721	9.593	6.020	5.031	9.336	10.972	6.504	5.863	4.853	2.487	8.611	7.989	9.433	12.234	10.103	9.235	6.976	5.497	5.289	7.084	6.024	7.028	12.212
11442	chr5	93137556	93140831	+	0	NA	intron (NM_001347377, intron 1 of 10)	MURVY-LTR|LTR|ERV1	45777	NM_001347377	52398	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	7.237	0.553	0.492	3.109	2.548	1.863	7.204	4.386	3.188	2.848	1.589	0.792	5.979	6.117	5.021	5.025	6.217	2.752	2.476	3.158	2.452	2.688	3.093	2.346	4.214
10336	chr4	104887107	104889024	+	0	NA	Intergenic	MLT1G1|LTR|ERVL-MaLR	-11667	NM_001316667	230558	Mm.197638	NM_146148	ENSMUSG00000035031	C8a	-	complement component 8, alpha polypeptide	protein-coding	3.933	1.159	0.374	4.145	1.015	0.954	1.541	4.718	1.891	1.996	2.065	0.878	2.457	3.213	3.814	3.716	2.227	3.433	0.842	0.676	0.382	1.046	0.377	0.256	4.429
11224	chr5	52799671	52807428	+	0	NA	intron (NM_001308144, intron 5 of 12)	B2_Mm2|SINE|B2	20494	NM_030185	78796	Mm.266886	NM_030185	ENSMUSG00000029179	Zcchc4	4930449I23Rik	zinc finger, CCHC domain containing 4	protein-coding	0.295	0.545	0.302	0.378	0.097	0.084	0.232	0.264	0.303	0.302	0.162	0.253	0.199	0.249	0.315	0.544	nan	0.382	2.371	1.749	1.488	5.735	1.027	0.780	0.500
6359	chr17	15839778	15843828	+	0	NA	Intergenic	Intergenic	-15217	NM_178615	68799	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	7.723	9.243	3.075	9.746	6.232	3.591	8.877	7.336	6.389	12.806	5.997	3.188	6.662	9.653	8.541	11.147	6.903	8.261	3.817	2.225	2.745	3.464	2.536	3.278	13.439
7832	chr19	46595831	46600198	+	0	NA	Intergenic	B1F|SINE|Alu	-1092	NM_001177812	226178	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	9.260	4.805	2.018	5.295	8.142	4.197	9.333	9.338	3.401	5.422	5.314	4.345	5.541	11.033	7.654	7.002	9.924	6.409	2.751	4.436	3.903	5.022	6.293	5.521	10.287
8154	chr2	33136785	33139436	+	0	NA	intron (NM_001290572, intron 17 of 17)	intron (NM_001290572, intron 17 of 17)	-50906	NM_178888	99326	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	3.269	2.285	0.691	2.944	2.443	1.417	1.005	1.847	1.768	nan	1.305	0.653	1.879	4.905	1.735	2.361	2.058	2.501	1.404	1.714	1.146	2.077	0.759	1.022	5.248
13974	chr8	8576001	8577555	+	0	NA	Intergenic	Intergenic	83995	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	7.932	0.499	0.254	3.651	4.673	3.801	7.225	5.865	4.966	5.937	3.958	2.614	6.476	6.157	9.282	11.342	7.490	7.211	3.035	2.426	2.174	5.287	2.549	3.747	11.941
13588	chr7	117789706	117794523	+	0	NA	Intergenic	L1_Mur2|LINE|L1	324033	NM_170669	267019	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	6.636	1.335	0.945	2.279	1.279	0.616	6.071	11.624	2.429	2.300	1.648	4.373	7.116	3.852	4.336	5.871	4.356	3.066	0.790	0.687	0.497	0.989	0.733	0.447	3.304
10812	chr4	140745205	140748736	+	0	NA	intron (NM_011061, intron 15 of 15)	intron (NM_011061, intron 15 of 15)	-4327	NM_153106	242726	Mm.271661	NM_153106	ENSMUSG00000040935	Padi6	Pad6|Padi5|ePAD	peptidyl arginine deiminase, type VI	protein-coding	2.022	0.870	0.495	1.814	3.710	2.758	3.372	0.875	nan	3.731	0.563	0.265	5.364	6.354	2.808	2.072	1.137	2.145	0.668	0.819	0.876	0.805	nan	1.049	3.604
4385	chr13	109159269	109162009	+	0	NA	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-164105	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	3.759	nan	0.761	1.224	1.207	0.809	2.586	3.050	nan	nan	0.497	1.130	4.015	5.466	2.536	3.797	3.756	3.844	0.868	1.055	1.222	nan	1.103	0.712	3.510
8021	chr2	25310985	25317323	+	0	NA	intron (NM_008169, intron 2 of 19)	B2_Mm1t|SINE|B2	5033	NM_008169	14810	Mm.278672	NM_008169	ENSMUSG00000026959	Grin1	GluN1|GluRdelta1|GluRzeta1|M100174|NMD-R1|NMDAR1|NR1|Nmdar|Rgsc174	glutamate receptor, ionotropic, NMDA1 (zeta 1)	protein-coding	6.825	4.285	1.248	7.413	2.153	0.946	6.225	9.559	nan	5.542	4.234	1.819	8.629	9.649	8.110	12.560	6.158	9.770	2.070	1.387	0.871	4.449	1.364	1.083	15.578
9933	chr4	10973822	10978049	+	0	NA	Intergenic	Intergenic	31684	NM_175175	71801	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	4.153	0.886	0.569	3.140	2.131	1.392	3.522	2.128	3.038	2.744	0.895	1.891	4.532	3.739	3.934	4.752	3.391	4.697	2.182	nan	1.414	1.503	1.489	1.611	6.497
6656	chr17	45884354	45886362	+	0	NA	Intergenic	Intergenic	139805	NM_001110267	22339	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	0.867	0.885	0.532	1.314	1.742	0.837	2.494	2.326	1.418	1.815	6.798	2.046	1.802	3.415	1.752	2.242	nan	1.563	0.915	1.007	1.219	2.517	0.482	0.588	2.098
7400	chr18	75651506	75665626	+	0	NA	intron (NM_201354, intron 1 of 11)	intron (NM_201354, intron 1 of 11)	39130	NM_201354	269037	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	6.296	nan	1.583	5.836	4.615	2.512	7.708	9.182	4.300	6.098	2.429	1.696	7.362	9.080	6.489	7.784	4.255	7.739	0.867	nan	0.839	1.184	0.662	0.512	8.187
5932	chr16	24415097	24419221	+	0	NA	intron (NM_178665, intron 1 of 12)	intron (NM_178665, intron 1 of 12)	-23504	NR_037954	68841	Mm.361995	NR_037954		Lppos	1110054M08Rik|AI481106	LIM domain containing preferred translocation partner in lipoma, opposite strand	ncRNA	4.618	4.738	2.870	3.539	5.846	1.865	4.273	3.600	3.884	4.056	1.465	1.079	4.893	7.214	5.076	6.774	3.448	6.586	1.161	1.136	0.656	1.231	nan	0.649	6.770
5709	chr15	101832302	101840953	+	0	NA	Intergenic	Lx8|LINE|L1	14159	NM_008473	16678	Mm.183137	NM_008473	ENSMUSG00000046834	Krt1	Krt-2.1|Krt2-1|Krt86	keratin 1	protein-coding	6.534	0.733	0.280	4.437	3.747	1.896	10.182	14.234	4.507	5.275	3.791	3.105	10.738	10.090	9.507	nan	7.417	7.046	6.179	2.920	2.578	6.237	4.402	3.281	10.284
3673	chr12	103783189	103801246	+	0	NA	Intergenic	Intergenic	-18584	NM_009246	20703	Mm.439695	NM_009246	ENSMUSG00000071177	Serpina1d	AI118301|Dom4|PI4|Spi1-4	serine (or cysteine) peptidase inhibitor, clade A, member 1D	protein-coding	0.418	0.497	0.346	nan	0.169	0.096	0.331	nan	nan	nan	0.199	0.149	0.170	nan	0.253	0.587	0.406	0.327	4.387	3.398	2.698	7.421	2.885	2.357	nan
15319	chr9	75620594	75625068	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-2901	NM_027309	70082	Mm.19119	NM_027309	ENSMUSG00000032184	Lysmd2	2210402C18Rik|AV033872|AW538442	LysM, putative peptidoglycan-binding, domain containing 2	protein-coding	6.382	0.451	0.292	5.228	3.063	1.628	3.401	1.969	5.843	5.365	3.177	3.642	11.517	8.129	4.420	5.518	6.004	7.591	2.306	nan	0.510	0.585	0.408	0.249	nan
14031	chr8	12815084	12816317	+	0	NA	intron (NR_121603, intron 4 of 29)	intron (NR_121603, intron 4 of 29)	16219	NR_045775	100504249	Mm.441494	NR_045775	ENSMUSG00000084780	Gm15350	OTTMUSG00000020611	predicted gene 15350	ncRNA	2.014	0.936	0.438	1.477	1.963	0.992	2.249	3.163	2.748	1.918	1.853	1.261	2.834	2.750	2.919	3.283	4.032	2.615	0.884	0.743	1.037	0.935	0.704	0.742	2.950
5665	chr15	100133602	100137217	+	0	NA	intron (NM_001159361, intron 3 of 37)	ORR1B1-int|LTR|ERVL-MaLR	-18987	NM_172819	239667	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	8.668	4.515	1.835	7.312	3.331	2.134	6.784	10.537	5.926	6.667	4.428	3.341	11.099	10.110	6.887	nan	8.904	7.357	1.815	2.162	1.513	3.662	2.747	2.913	8.558
7604	chr19	16229362	16230802	+	0	NA	intron (NM_008139, intron 2 of 6)	intron (NM_008139, intron 2 of 6)	65984	NR_033228	595139	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	4.803	1.283	1.559	3.189	5.045	2.639	1.735	1.725	2.803	2.708	1.961	2.146	1.298	2.562	1.255	2.107	2.807	3.163	0.875	1.820	1.610	0.740	2.138	1.268	1.351
10284	chr4	94949841	94951573	+	0	NA	intron (NM_177239, intron 17 of 19)	RLTR10|LTR|ERVK	-21864	NM_001290623	67753	Mm.25097	NM_027089	ENSMUSG00000028575	Eqtn	1700028B15Rik|4930579C15Rik|Afaf|C81058|Eqtl|Eqts	equatorin, sperm acrosome associated	protein-coding	2.222	nan	0.527	2.606	1.295	0.708	3.477	4.205	nan	nan	0.486	0.577	4.586	4.054	5.626	6.436	2.584	2.390	2.694	0.916	0.516	3.987	2.665	1.677	3.511
15792	chrX	101175280	101178820	+	0	NA	intron (NM_001110311, intron 4 of 5)	Lx5c|LINE|L1	45513	NM_001110311	55988	Mm.206949	NM_018875	ENSMUSG00000046032	Snx12	2610001F05Rik|AW045757|SDP8	sorting nexin 12	protein-coding	4.745	5.899	2.073	5.710	3.794	2.091	3.454	4.560	4.327	5.719	3.905	2.658	5.497	5.812	4.465	6.268	3.441	4.961	3.197	1.585	1.471	3.301	1.709	1.419	6.710
15214	chr9	65756245	65758041	+	0	NA	intron (NM_172536, intron 2 of 9)	intron (NM_172536, intron 2 of 9)	70421	NM_172536	214812	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	7.224	8.142	2.053	6.228	3.447	1.486	5.509	5.773	4.319	6.549	6.883	2.865	5.577	6.933	6.276	7.936	4.521	6.800	nan	2.452	2.976	5.737	3.723	2.495	12.121
8662	chr2	129417231	129420249	+	0	NA	Intergenic	Intergenic	-47601	NM_008361	16176	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	7.072	6.700	2.193	6.051	3.568	2.859	1.664	3.765	2.310	5.926	6.031	1.836	2.035	4.057	2.909	nan	2.042	3.459	nan	3.197	4.183	6.244	3.566	4.074	6.886
13212	chr7	54091498	54102770	+	0	NA	Intergenic	Intergenic	-205245	NR_105746	102466619		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	7.866	5.056	1.459	6.764	4.743	2.478	8.512	11.602	5.747	8.599	7.543	4.332	10.082	10.309	9.225	nan	6.778	8.555	4.340	2.192	1.852	3.956	2.616	2.048	11.487
4581	chr14	31939380	31947105	+	0	NA	Intergenic	Intergenic	-85861	NM_030166	78754	Mm.40681	NM_030166	ENSMUSG00000021903	Galnt15	4631401E18Rik|Galntl2|mpp-GalNAc-T15	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 15	protein-coding	3.273	3.572	1.721	4.331	2.491	1.653	2.296	6.424	2.444	3.364	2.025	1.462	2.763	3.391	4.082	4.522	nan	nan	2.170	1.678	1.725	nan	1.732	1.705	4.728
7935	chr2	4637358	4644938	+	0	NA	intron (NM_026045, intron 4 of 9)	intron (NM_026045, intron 4 of 9)	10938	NM_026045	67229	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	6.776	0.805	0.293	5.125	2.478	1.589	9.663	6.728	4.619	9.932	1.251	0.804	10.163	9.129	8.606	10.796	7.260	9.667	2.378	1.044	0.977	1.820	1.612	1.694	11.072
13274	chr7	73470195	73471279	+	0	NA	intron (NM_001081345, intron 24 of 38)	RSINE1|SINE|B4	71009	NM_001081345	244059	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	2.399	1.381	0.252	2.037	2.030	0.904	3.149	1.341	2.441	2.644	1.219	0.805	1.479	3.622	2.517	2.361	2.076	2.583	1.797	2.011	0.284	1.866	1.439	0.606	3.347
9476	chr3	89656235	89659037	+	0	NA	intron (NM_080466, intron 5 of 7)	B1_Mur2|SINE|Alu	-57386	NM_001038587	56417	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	2.914	0.974	0.509	5.122	1.030	1.308	1.418	1.185	2.337	2.296	0.994	0.665	0.725	1.945	1.517	2.420	2.039	3.321	nan	0.964	0.962	3.344	1.646	1.794	2.881
293	chr1	73726885	73732573	+	0	NA	intron (NR_045311, intron 6 of 8)	RMER15|LTR|ERVL	125846	NR_105769	102465179		NR_105769	ENSMUSG00000098504	Mir6351	Gm27936|mmu-mir-6351	microRNA 6351	ncRNA	5.897	0.429	0.308	0.291	0.334	0.087	6.159	3.555	2.375	1.680	0.277	0.832	4.873	2.188	5.968	8.545	7.269	nan	nan	nan	0.261	0.328	nan	0.376	nan
4219	chr13	63340286	63363948	+	0	NA	intron (NM_001347514, intron 6 of 15)	intron (NM_001347514, intron 6 of 15)	-50834	NR_037235	100526474		NR_037235	ENSMUSG00000092741	Mir3074-1	mmu-mir-3074-1	microRNA 3074-1	ncRNA	7.093	5.678	2.699	7.498	5.055	2.643	2.813	3.358	5.212	5.463	6.581	3.268	3.849	5.664	4.533	nan	3.258	6.833	9.533	5.395	3.219	8.110	7.333	4.770	5.176
1272	chr10	44172866	44179341	+	0	NA	intron (NR_001582, intron 2 of 6)	intron (NR_001582, intron 2 of 6)	5656	NR_001582	70365	Mm.87073	NR_001582	ENSMUSG00000091358	Speer5-ps1	1700007C10Rik|SPEER-5|Speer5-ps	spermatogenesis associated glutamate (E)-rich protein 5, pseudogene 1	pseudo	4.431	8.947	3.362	4.522	1.810	0.897	2.350	2.427	3.416	4.057	3.591	1.651	1.830	3.805	3.667	4.135	3.068	3.902	nan	1.347	0.991	1.655	2.139	1.713	3.613
14041	chr8	13423486	13428948	+	0	NA	Intergenic	MamGypLTR1c|LTR|Gypsy	-9242	NM_001143671	272465	Mm.250502	NM_001143671	ENSMUSG00000038457	Tmem255b	Fam70b|Gm687	transmembrane protein 255B	protein-coding	0.548	0.615	0.237	0.823	0.428	0.179	0.284	0.444	0.588	0.593	0.311	0.166	0.234	0.338	0.528	nan	0.411	0.661	2.429	3.128	1.968	8.189	0.764	0.596	0.750
13426	chr7	96550002	96555938	+	0	NA	intron (NM_001310760, intron 4 of 32)	intron (NM_001310760, intron 4 of 32)	-211006	NR_046043	670727	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	OTTMUSG00000021245	predicted gene 15412	ncRNA	7.119	2.789	0.769	7.897	2.517	1.379	6.892	8.718	4.037	5.665	2.197	2.268	6.520	6.385	7.839	nan	5.137	7.604	nan	1.383	1.111	2.228	1.367	1.101	9.130
10415	chr4	117524063	117525682	+	0	NA	Intergenic	Intergenic	-25452	NM_001285902	140546	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	2.925	0.492	0.413	2.514	3.129	1.509	2.014	1.095	3.345	4.318	0.480	0.314	3.070	5.179	3.091	4.190	2.318	5.047	2.068	2.762	2.344	2.195	1.719	0.904	5.799
11252	chr5	63153576	63158104	+	0	NA	Intergenic	L1Md_F2|LINE|L1	342017	NM_001170705	100322896	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	3.050	6.015	1.943	5.248	2.108	0.580	1.385	1.691	2.960	3.919	3.131	2.258	0.938	1.629	2.390	2.358	1.812	4.009	1.213	1.196	0.958	nan	1.104	0.749	1.989
2888	chr11	106038144	106041834	+	0	NA	intron (NM_027946, intron 1 of 6)	intron (NM_027946, intron 1 of 6)	3117	NM_027946	71833	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	3.917	4.391	2.716	3.730	3.992	2.210	3.381	3.840	nan	4.470	3.160	2.918	5.616	6.179	3.352	3.714	3.172	4.647	3.155	2.430	1.175	nan	2.197	1.818	2.983
3818	chr13	5442351	5445185	+	0	NA	Intergenic	Intergenic	414324	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	3.076	0.928	0.293	2.996	3.278	0.969	1.820	3.126	3.814	2.953	6.485	5.028	2.400	3.177	2.423	2.354	1.621	4.297	1.126	0.580	0.475	0.581	0.649	0.266	1.158
5614	chr15	97664801	97671541	+	0	NA	Intergenic	Intergenic	37651	NM_028003	71919	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	7.968	4.805	1.942	6.862	4.073	2.284	8.359	9.664	3.922	5.232	4.666	1.953	9.092	9.634	7.389	nan	6.030	7.781	1.104	1.006	0.749	1.397	0.796	0.596	8.160
10020	chr4	43569376	43577275	+	0	NA	intron (NM_172692, intron 3 of 16)	RSINE1|SINE|B4	-5410	NM_172866	242406	Mm.259311	NM_172866	ENSMUSG00000028468	Rgp1	1110029E03Rik|AI527196|F730001J03|mKIAA0258	RAB6A GEF compex partner 1	protein-coding	10.817	nan	3.301	8.146	7.493	3.213	9.484	7.676	5.440	7.905	5.384	3.027	6.981	11.201	7.495	9.450	5.829	7.835	3.412	3.585	2.359	nan	2.735	1.996	11.545
10232	chr4	83170601	83172580	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	-119423	NM_001198811	329872	Mm.242337	NM_177863	ENSMUSG00000059049	Frem1	BC037594|D430009N09|D630008K06|crf11|eye<m02Jus>|eyes2|heb|qbrick	Fras1 related extracellular matrix protein 1	protein-coding	4.500	9.426	3.128	6.200	2.183	0.724	4.429	nan	nan	5.503	2.820	2.737	4.374	5.708	7.150	7.659	3.214	4.672	6.398	nan	3.734	17.051	3.647	3.168	9.589
8753	chr2	146075028	146080879	+	0	NA	Intergenic	B1_Mur1|SINE|Alu	143169	NM_175280	78774	Mm.136347	NM_175280	ENSMUSG00000037143	Cfap61	4930529M08Rik|BB178539|BC024760	cilia and flagella associated protein 61	protein-coding	0.474	0.845	0.404	0.570	0.391	0.173	0.444	0.790	0.430	0.470	0.256	0.189	0.310	0.288	0.423	0.842	0.953	0.739	2.663	2.173	1.282	5.476	2.456	1.904	0.979
469	chr1	95243680	95245167	+	0	NA	Intergenic	Intergenic	-69205	NM_026321	67698	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	4.005	nan	0.523	1.037	0.929	0.497	1.282	3.058	1.523	2.685	0.617	0.232	1.933	4.047	1.948	3.000	2.150	3.193	0.803	0.259	0.150	nan	0.233	0.379	2.297
15464	chr9	106209827	106212137	+	0	NA	intron (NM_011876, intron 2 of 8)	ID_B1|SINE|B4	7874	NM_011876	23999	Mm.274346	NM_011876	ENSMUSG00000023277	Twf2	A6-related|AU014993|Ptk9l|Ptk9r	twinfilin actin binding protein 2	protein-coding	3.668	2.657	1.198	4.724	1.457	0.430	1.461	1.698	nan	2.709	5.144	1.761	2.206	3.016	2.263	2.739	1.423	4.243	0.709	0.757	0.247	0.843	0.456	0.163	4.420
9983	chr4	40101516	40106398	+	0	NA	Intergenic	Intergenic	-39308	NM_007386	11428	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	6.727	1.523	0.720	4.920	3.073	1.349	6.761	6.121	5.138	6.052	3.922	2.613	7.923	8.267	6.213	nan	5.531	6.510	1.848	1.035	0.645	0.662	1.198	0.805	9.177
6350	chr17	14002449	14005564	+	0	NA	Intergenic	Intergenic	55633	NM_001122977	635895	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	7.764	1.042	0.504	5.886	2.805	1.376	7.609	6.264	6.654	6.466	8.096	3.960	7.257	7.543	7.106	9.225	8.663	6.960	1.261	1.116	0.590	1.143	1.362	0.875	7.991
1566	chr10	86519703	86521928	+	0	NA	Intergenic	Intergenic	-21919	NM_013722	27204	Mm.394931	NM_013722	ENSMUSG00000059602	Syn3	-	synapsin III	protein-coding	nan	0.735	0.729	0.362	0.248	0.109	0.676	0.618	0.442	0.496	0.185	0.044	0.367	nan	0.283	0.738	0.915	nan	8.714	4.897	5.362	6.803	10.754	9.859	0.858
10788	chr4	138767362	138771061	+	0	NA	Intergenic	B1_Mm|SINE|Alu	-6524	NM_001347230	18782	Mm.71913	NM_011109	ENSMUSG00000041202	Pla2g2d	Splash|mGIID	phospholipase A2, group IID	protein-coding	3.665	3.307	1.201	6.841	3.558	2.032	3.301	2.465	nan	3.232	3.160	1.426	2.866	5.700	4.222	4.022	1.956	3.779	1.183	1.074	0.725	2.038	nan	0.336	5.113
3737	chr12	112610926	112617179	+	0	NA	intron (NM_198411, intron 22 of 22)	intron (NM_198411, intron 22 of 22)	-5995	NM_007421	11565	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	6.821	2.866	1.095	7.704	3.037	1.942	6.102	6.413	3.518	7.737	3.971	2.987	6.522	5.780	6.471	8.282	7.277	7.006	1.793	1.041	1.402	1.881	1.378	1.578	12.286
15875	chrX	163638230	163651248	+	0	NA	Intergenic	(TTCC)n|Simple_repeat|Simple_repeat	-95003	NM_008177	14829	Mm.4687	NM_008177	ENSMUSG00000031364	Grpr	GRP-R	gastrin releasing peptide receptor	protein-coding	5.822	6.487	2.870	4.929	3.165	1.375	4.436	5.661	4.985	5.852	3.616	2.282	5.162	6.350	5.769	6.104	4.326	6.386	1.641	1.521	0.950	1.376	0.968	0.707	5.315
14364	chr8	80245767	80247854	+	0	NA	Intergenic	Intergenic	-188802	NM_020259	15245	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	2.153	nan	0.253	3.446	0.723	0.341	nan	nan	nan	1.445	1.153	0.643	0.629	0.877	1.332	nan	0.704	1.448	0.974	0.923	0.613	nan	0.249	0.538	nan
12049	chr6	8726155	8728396	+	0	NA	intron (NM_001252266, intron 5 of 11)	intron (NM_001252266, intron 5 of 11)	31183	NM_001252266	15893	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	5.504	1.528	0.350	5.687	1.690	1.244	6.452	8.836	3.954	6.779	0.364	2.490	8.005	6.123	9.761	13.310	7.443	7.235	5.405	2.618	2.412	6.371	3.978	5.287	10.418
15738	chrX	69227365	69229634	+	0	NA	Intergenic	Intergenic	-131832	NM_008032	14266	Mm.466576	NM_008032	ENSMUSG00000031189	Aff2	FMR2P|Fmr2|Ox19|Oxh	AF4/FMR2 family, member 2	protein-coding	3.122	0.533	0.447	2.213	1.086	0.549	1.790	3.949	2.684	2.544	1.723	0.334	2.637	3.584	2.795	3.667	2.292	3.103	0.808	0.580	0.568	1.439	0.293	0.339	1.569
14836	chr8	130964042	130982559	+	0	NA	Intergenic	Intergenic	1709670	NR_144501	102635552		NM_001346808		Gm32856	-	predicted gene, 32856	protein-coding	6.286	nan	0.651	nan	2.888	1.741	nan	nan	5.274	5.285	1.585	0.923	5.517	3.502	nan	8.101	6.185	nan	nan	1.127	0.771	nan	0.857	nan	nan
40	chr1	19198829	19201972	+	0	NA	Intergenic	ORR1B2|LTR|ERVL-MaLR	-8514	NM_009334	21419	Mm.137021	NM_009334	ENSMUSG00000025927	Tfap2b	AI606113|AP-2(beta)|E130018K07Rik|Tcfap2b	transcription factor AP-2 beta	protein-coding	2.249	0.299	0.689	0.199	5.783	3.531	18.809	0.378	0.141	0.216	0.205	0.096	0.330	1.326	1.693	0.501	2.001	0.411	0.462	0.391	0.312	0.338	0.500	0.454	0.494
9960	chr4	19805602	19811930	+	0	NA	Intergenic	Intergenic	-9961	NM_028746	74087	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	4.890	0.451	0.484	3.376	3.656	2.169	3.200	2.499	4.355	4.268	2.063	0.832	5.752	6.201	4.372	6.724	3.736	6.569	0.650	0.587	0.296	0.462	0.399	0.393	5.409
10209	chr4	82026514	82034476	+	0	NA	Intergenic	MTEa-int|LTR|ERVL-MaLR	-34885	NR_040659	545641	Mm.216028	NR_040659	ENSMUSG00000085022	Gm5860	EG545641	predicted gene 5860	ncRNA	5.459	0.759	0.434	4.306	3.201	1.614	4.505	6.878	5.504	5.882	4.771	2.895	6.961	7.898	5.443	6.239	4.312	5.659	nan	3.904	2.292	11.551	1.282	1.150	5.426
12054	chr6	13820034	13822833	+	0	NA	Intergenic	Intergenic	18509	NM_001330666	64450	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	9.235	4.855	1.743	5.408	3.560	0.760	7.209	6.835	nan	5.690	8.343	3.428	10.135	8.085	8.067	10.752	7.350	8.424	1.919	1.520	0.564	2.942	0.928	0.675	5.023
9011	chr2	166816961	166822642	+	0	NA	intron (NM_001085495, intron 1 of 38)	intron (NM_001085495, intron 1 of 38)	14220	NM_001085495	99371	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	9.038	7.272	2.561	6.786	5.521	3.988	7.278	10.687	5.243	8.270	3.625	2.986	8.733	9.737	7.738	9.116	8.411	7.388	nan	2.307	2.242	3.154	2.770	3.047	10.583
10728	chr4	136297507	136300485	+	0	NA	Intergenic	CT-rich|Low_complexity|Low_complexity	-11946	NM_001277122	74326	Mm.31051	NM_028871	ENSMUSG00000066037	Hnrnpr	2610003J05Rik|2610528B01Rik|Hnrpr	heterogeneous nuclear ribonucleoprotein R	protein-coding	nan	0.566	0.138	0.876	0.330	0.208	0.419	0.717	nan	0.959	0.614	0.528	0.186	0.387	0.619	0.608	0.109	nan	4.218	2.708	1.491	7.005	3.928	3.694	1.029
1115	chr10	17775312	17780190	+	0	NA	Intergenic	Intergenic	-18468	NM_138628	378431	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	4.526	5.197	1.661	4.632	2.307	1.325	1.626	4.282	nan	5.742	3.063	1.750	2.456	5.752	4.144	3.952	3.099	5.281	2.713	1.900	1.657	2.879	2.693	2.629	nan
13111	chr7	31637739	31644277	+	0	NA	Intergenic	L1Md_F|LINE|L1	64746	NM_001198871	100043836	Mm.296883	NM_001198871	ENSMUSG00000094053	Scgb2b7	Abpbg7|Gm4684	secretoglobin, family 2B, member 7	protein-coding	0.674	9.341	5.801	0.434	0.338	0.267	0.867	1.279	0.621	0.716	1.146	0.580	0.463	0.663	1.018	0.991	1.353	0.653	0.605	0.826	0.713	0.773	0.782	0.557	1.069
11925	chr5	144392570	144395821	+	0	NA	Intergenic	PB1D11|SINE|Alu	35670	NR_102373	100579137		NR_102372	ENSMUSG00000104600	Dmrt1i	Dmr	Dmrt1 interacting ncRNA	ncRNA	5.185	1.980	0.990	5.701	2.404	1.202	2.521	3.096	4.935	3.856	2.520	2.296	3.428	5.285	3.471	3.997	3.769	4.733	1.679	1.134	0.439	1.307	0.718	0.483	3.399
5626	chr15	98783035	98784935	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-5835	NM_011718	22410	Mm.4709	NM_011718	ENSMUSG00000022996	Wnt10b	Wnt12	wingless-type MMTV integration site family, member 10B	protein-coding	6.269	9.602	4.945	7.131	2.360	1.354	2.929	2.434	2.273	4.392	4.739	1.953	2.303	4.858	3.719	3.986	2.946	4.234	9.524	6.031	5.560	6.540	6.908	6.005	7.471
4421	chr13	113187239	113189574	+	0	NA	Intergenic	RLTR13D2|LTR|ERVK	-7509	NM_008196	14945	Mm.56993	NM_008196	ENSMUSG00000042385	Gzmk	-	granzyme K	protein-coding	3.549	8.943	7.642	4.195	5.166	2.966	1.312	1.824	3.441	3.335	1.166	2.033	1.771	2.393	1.822	2.030	1.929	2.893	2.236	2.734	2.488	1.574	1.774	1.859	nan
7124	chr18	35181283	35182982	+	0	NA	intron (NM_009818, intron 6 of 17)	intron (NM_009818, intron 6 of 17)	32892	NM_178005	107065	Mm.39900	NM_178005	ENSMUSG00000071862	Lrrtm2	AI851755|BB129880|C630011A14Rik|mKIAA0416	leucine rich repeat transmembrane neuronal 2	protein-coding	5.873	1.213	0.210	2.980	2.523	1.618	4.521	8.386	3.595	4.064	4.221	1.572	5.836	6.444	6.899	7.619	2.392	6.217	0.877	0.350	0.374	1.291	0.495	0.410	10.598
3529	chr12	81888440	81897777	+	0	NA	intron (NM_018814, intron 1 of 35)	intron (NM_018814, intron 1 of 35)	33078	NM_018814	54604	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog (Drosophila)	protein-coding	8.112	7.911	3.939	6.715	5.330	4.046	4.565	3.612	4.768	7.349	4.921	2.710	5.550	6.329	5.117	nan	4.300	6.327	3.329	3.312	3.085	3.922	3.552	3.412	8.361
4406	chr13	111080125	111082296	+	0	NA	Intergenic	L1MA6|LINE|L1	148221	NR_045908	73129	Mm.417826	NR_045908		3110015C05Rik	-	RIKEN cDNA 3110015C05 gene	ncRNA	2.795	nan	0.158	2.650	2.301	1.071	2.937	4.541	nan	4.202	0.247	0.540	5.608	5.996	4.605	3.929	3.365	5.292	0.772	0.861	0.056	nan	0.562	0.309	1.666
4303	chr13	97312689	97316665	+	0	NA	Intergenic	Intergenic	73572	NM_007930	13803	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	7.540	5.451	2.109	7.720	6.453	5.499	5.910	6.866	4.837	9.656	5.322	3.383	6.302	7.672	5.817	6.641	nan	6.950	2.865	2.017	3.079	3.365	2.976	4.017	9.739
2293	chr11	61381524	61382815	+	0	NA	Intergenic	Intergenic	-4094	NM_026183	67473	Mm.100741	NM_026183	ENSMUSG00000010122	Slc47a1	1300013J15Rik|AI036982|MATE1|mMATE1	solute carrier family 47, member 1	protein-coding	2.063	0.987	0.196	2.633	2.126	0.754	2.239	1.259	1.446	1.763	1.058	0.800	1.351	2.913	2.307	2.298	2.068	2.384	nan	0.859	0.380	1.071	0.613	0.367	nan
14972	chr9	40225299	40232322	+	0	NA	Intergenic	Intergenic	36494	NM_030713	80902	Mm.132196	NM_030713	ENSMUSG00000025602	Zfp202	C130037E22Rik|Znf202	zinc finger protein 202	protein-coding	5.561	2.687	1.370	4.038	3.330	2.466	3.670	5.999	3.244	3.903	0.883	0.472	6.329	7.762	6.226	7.644	5.483	5.717	nan	1.693	2.039	2.270	1.115	0.942	8.462
543	chr1	127445023	127449267	+	0	NA	intron (NM_145128, intron 13 of 17)	(TA)n|Simple_repeat|Simple_repeat	230876	NM_028135	72160	Mm.281287	NM_028135	ENSMUSG00000026347	Tmem163	2610024A01Rik|SV31	transmembrane protein 163	protein-coding	12.059	nan	0.435	3.404	6.579	4.125	9.396	8.891	5.709	6.009	6.417	5.398	10.402	9.237	6.859	11.495	10.474	7.121	nan	1.174	0.635	0.553	1.471	1.249	4.262
267	chr1	66947130	66948843	+	0	NA	Intergenic	B3|SINE|B2	-2930	NM_021285	17901	Mm.1000	NM_021285	ENSMUSG00000061816	Myl1	AI325107|MLC1f|MLC3f|Mylf	myosin, light polypeptide 1	protein-coding	6.535	0.649	0.424	0.873	0.948	0.344	5.688	2.163	2.395	1.813	1.520	1.291	6.272	4.330	2.658	nan	3.816	nan	0.803	0.776	0.229	1.007	0.703	0.655	1.876
14327	chr8	74082247	74083398	+	0	NA	Intergenic	RMER3D-int|LTR|ERVK	-729282	NM_010687	16795	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	1.821	6.270	1.468	4.940	2.302	1.374	3.319	3.403	nan	3.655	0.508	0.441	4.545	4.166	4.147	2.435	2.752	2.164	1.686	2.490	1.571	2.994	1.649	1.476	5.017
1892	chr11	3465525	3467595	+	0	NA	intron (NR_028317, intron 1 of 3)	intron (NR_028317, intron 1 of 3)	-3570	NR_037301	100499518		NR_037301	ENSMUSG00000095323	Mir3470a	mmu-mir-3470a	microRNA 3470a	ncRNA	4.135	0.600	0.626	2.008	2.789	1.990	3.105	5.374	3.406	3.043	3.847	3.158	3.488	4.563	3.063	3.090	2.842	3.374	3.431	nan	2.189	1.588	2.793	1.852	3.406
8363	chr2	73322229	73324475	+	0	NA	intron (NM_029022, intron 5 of 7)	intron (NM_029022, intron 5 of 7)	10700	NM_029022	74616	Mm.247457	NM_029022	ENSMUSG00000008226	Scrn3	4833415E20Rik|AI427019|AV002033|Ses3	secernin 3	protein-coding	13.896	13.471	4.708	8.711	3.477	1.745	5.746	6.945	5.433	6.511	3.682	2.079	5.194	7.088	5.758	10.143	7.268	7.179	1.653	3.088	1.392	2.712	1.085	0.876	10.844
4561	chr14	28050244	28053270	+	0	NA	intron (NM_001347497, intron 14 of 19)	intron (NM_001347497, intron 14 of 19)	429350	NM_177814	238988	Mm.318004	NM_177814	ENSMUSG00000040640	Erc2	6430531D06|CAST|CAST1/ERC2|D14Ertd171e|ELKS2alpha	ELKS/RAB6-interacting/CAST family member 2	protein-coding	4.322	5.229	1.569	6.306	2.346	1.133	2.054	4.121	3.240	2.303	2.789	1.787	1.327	1.806	2.263	3.039	1.772	3.960	3.639	1.819	1.930	nan	2.360	2.486	2.615
10871	chr4	147411751	147417128	+	0	NA	intron (NM_001039209, intron 1 of 2)	(TTTC)n|Simple_repeat|Simple_repeat	-138838	NM_001014397	433804	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154|OTTMUSG00000010673	zinc finger protein 985	protein-coding	6.103	4.616	2.030	6.373	3.339	2.410	6.079	6.144	3.368	4.914	3.854	2.102	5.867	7.736	6.024	7.599	3.599	5.649	4.992	2.430	2.873	7.901	5.992	5.800	7.919
9800	chr3	129055328	129058583	+	0	NA	Intergenic	Intergenic	-142923	NM_001286942	18741	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding	3.643	0.538	0.197	3.257	2.167	1.409	5.668	nan	3.226	2.595	1.280	0.672	4.728	4.863	5.548	nan	nan	nan	0.412	0.545	0.650	0.411	0.801	0.291	5.989
9564	chr3	96433035	96434452	+	0	NA	TTS (NM_001256180)	TTS (NM_001256180)	18563	NM_001256181	329716	Mm.275223	NM_183223	ENSMUSG00000046317	BC107364	D730018G16	cDNA sequence BC107364	protein-coding	10.443	6.967	4.822	6.953	8.163	3.407	10.281	7.462	4.975	6.038	7.734	5.577	6.957	12.104	9.702	9.327	10.640	7.193	5.418	5.152	3.755	5.930	5.994	5.019	9.546
2813	chr11	101518726	101520575	+	0	NA	intron (NM_009764, intron 11 of 22)	intron (NM_009764, intron 11 of 22)	32305	NM_009764	12189	Mm.244975	NM_009764	ENSMUSG00000017146	Brca1	-	breast cancer 1, early onset	protein-coding	6.265	nan	3.879	7.053	7.838	8.018	5.427	6.809	5.855	5.778	4.260	3.227	6.446	8.373	6.173	6.887	5.616	6.899	3.664	nan	2.737	3.556	nan	nan	5.154
4648	chr14	48003473	48005692	+	0	NA	Intergenic	B3|SINE|B2	105718	NR_045959	73961	Mm.390702	NR_045959		4930447J18Rik	4930425M13Rik	RIKEN cDNA 4930447J18 gene	ncRNA	0.971	1.090	0.703	0.830	0.986	0.492	0.740	2.243	0.878	0.771	5.519	0.991	1.162	1.662	1.933	1.323	0.487	1.510	0.813	0.565	0.146	0.704	0.198	0.079	1.027
12975	chr7	20131179	20137543	+	0	NA	Intergenic	L1_Mur2|LINE|L1	4727	NM_207547	404290	Mm.377932	NM_207547	ENSMUSG00000096164	Vmn1r93	V1rd21	vomeronasal 1 receptor 93	protein-coding	2.522	1.082	0.643	3.522	2.487	1.717	3.876	3.900	3.112	3.846	1.171	1.060	6.208	6.259	4.758	3.385	2.749	4.368	3.601	1.822	1.417	3.949	3.939	3.048	4.535
13717	chr7	130230539	130232414	+	0	NA	intron (NM_001347638, intron 2 of 15)	intron (NM_001347638, intron 2 of 15)	35332	NM_010207	14183	Mm.16340	NM_010207	ENSMUSG00000030849	Fgfr2	AU043015|AW556123|Bek|Fgfr-2|Fgfr-7|Fgfr7|KGFR|KGFRTr|svs	fibroblast growth factor receptor 2	protein-coding	1.786	0.964	0.877	0.578	1.664	0.701	1.771	4.165	1.262	0.956	1.924	2.678	1.417	1.911	nan	0.973	1.673	1.606	4.299	4.327	3.727	5.787	6.364	5.334	0.700
12259	chr6	54903792	54905646	+	0	NA	Intergenic	MTE2a|LTR|ERVL-MaLR	66942	NM_001171007	107607	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	5.309	5.236	2.313	3.160	6.709	2.663	5.360	6.834	3.293	4.121	4.102	1.879	7.940	6.993	7.347	5.756	6.094	5.292	nan	2.874	2.078	1.712	1.231	1.443	4.311
2724	chr11	97518056	97519122	+	0	NA	intron (NM_018873, intron 19 of 19)	intron (NM_018873, intron 19 of 19)	-18249	NM_001289118	100141474	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	3.941	2.624	1.964	1.669	2.463	1.391	1.240	2.237	1.306	1.153	1.292	0.902	2.283	4.443	1.821	1.572	nan	2.315	1.410	nan	0.996	1.113	nan	nan	2.264
757	chr1	155432197	155433863	+	0	NA	Intergenic	RLTR25A|LTR|ERVK	-15586	NM_011273	19775	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	8.685	1.112	0.615	3.516	3.468	1.464	4.721	4.599	4.135	2.968	4.765	2.666	5.600	4.190	6.059	7.901	5.029	7.490	nan	1.037	0.517	0.743	nan	0.358	8.098
7899	chr19	56881292	56883125	+	0	NA	intron (NM_172840, intron 2 of 13)	intron (NM_172840, intron 2 of 13)	7792	NM_172840	240675	Mm.129534	NM_172840	ENSMUSG00000025082	Vwa2	Amaco	von Willebrand factor A domain containing 2	protein-coding	2.840	nan	0.751	1.667	1.489	0.749	4.179	4.452	2.375	3.051	0.545	0.413	3.318	4.581	4.816	5.284	6.511	4.343	0.651	0.538	0.134	0.424	0.653	0.143	4.775
2577	chr11	86491924	86498760	+	0	NA	intron (NM_029788, intron 8 of 8)	intron (NM_029788, intron 8 of 8)	10685	NM_029788	76892	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding	6.782	2.832	1.663	5.915	6.179	4.973	6.815	7.541	5.490	6.172	3.861	2.986	7.228	9.140	6.876	6.949	7.313	7.065	2.241	1.977	1.697	nan	1.731	1.504	5.788
6210	chr16	92397758	92399085	+	0	NA	intron (NM_001081549, intron 1 of 3)	intron (NM_001081549, intron 1 of 3)	1657	NM_019466	54720	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	8.805	1.133	0.587	6.787	6.855	2.404	8.114	11.402	4.283	5.587	1.957	1.082	5.267	9.884	10.073	12.548	5.601	8.628	0.802	0.820	0.852	nan	0.626	0.842	13.653
12834	chr6	144157289	144159363	+	0	NA	intron (NM_001113559, intron 1 of 13)	intron (NM_001113559, intron 1 of 13)	51242	NM_001113559	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding	nan	0.498	0.381	nan	0.551	0.210	0.890	nan	0.531	nan	0.858	0.583	nan	0.348	0.444	nan	0.647	0.365	1.271	3.484	2.477	4.068	3.673	1.727	nan
12604	chr6	114761240	114763197	+	0	NA	intron (NM_001253718, intron 18 of 19)	L1Md_A|LINE|L1	119121	NM_001253717	74244	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	1.859	1.461	0.617	2.504	0.872	0.795	1.726	1.423	3.079	4.097	2.204	1.257	4.444	3.881	3.215	6.825	2.401	3.993	0.948	0.478	0.347	1.794	nan	0.143	5.522
9296	chr3	51905219	51909522	+	0	NA	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	197636	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding	9.837	4.490	1.546	11.026	4.571	2.899	12.806	9.953	7.013	13.453	9.348	4.612	10.897	13.793	11.274	12.154	8.889	11.193	6.851	2.912	3.894	7.417	5.069	5.829	19.099
13788	chr7	135666448	135669867	+	0	NA	intron (NM_001316681, intron 8 of 17)	intron (NM_001316681, intron 8 of 17)	-15843	NR_015548	67765	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	7.496	nan	2.650	11.514	6.700	5.613	5.919	10.459	nan	11.157	7.434	5.145	7.662	9.835	8.296	8.211	6.566	9.541	4.614	1.684	2.857	5.290	2.057	2.761	12.032
11259	chr5	64550316	64551985	+	0	NA	Intergenic	L1Md_A|LINE|L1	59549	NR_045078	100042198	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	3.363	17.705	4.051	5.749	1.535	1.145	2.140	4.667	1.793	5.169	2.058	2.420	1.312	2.280	2.932	2.212	1.112	2.490	9.122	3.329	4.769	9.768	5.678	7.881	3.692
9	chr1	7090027	7091551	+	0	NA	intron (NM_183028, intron 1 of 5)	intron (NM_183028, intron 1 of 5)	1869	NM_183028	319263	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	3.288	1.486	1.328	3.861	2.083	1.681	1.029	1.303	2.824	2.024	1.476	0.956	1.655	1.571	1.225	1.964	1.532	2.929	1.205	1.108	0.645	0.591	0.456	0.502	1.072
13771	chr7	134613440	134615625	+	0	NA	Intergenic	Intergenic	-56155	NM_001033420	330662	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik	dedicator of cytokinesis 1	protein-coding	11.431	13.203	5.089	12.504	6.123	4.517	11.029	12.918	7.401	9.944	8.391	4.076	11.140	13.297	10.993	11.937	8.220	10.921	6.342	3.053	3.209	6.498	4.316	4.634	16.434
3359	chr12	57795905	57799164	+	0	NA	Intergenic	Intergenic	-134623	NR_131112	217601	Mm.488987	NR_131112		BC042761	-	cDNA sequence BC042761	ncRNA	0.484	nan	0.145	0.379	0.431	0.215	0.387	0.357	2.017	1.051	7.553	3.954	0.444	0.596	nan	nan	0.462	nan	0.646	4.777	3.242	8.142	0.331	0.154	1.086
7379	chr18	74581849	74583691	+	0	NA	intron (NM_201600, intron 4 of 38)	L1_Mus3|LINE|L1	-51646	NR_045368	73606	Mm.444734	NR_045368		1700120E14Rik	-	RIKEN cDNA 1700120E14 gene	ncRNA	5.127	nan	0.286	4.350	6.314	3.371	3.063	5.744	5.185	7.949	0.599	0.798	7.983	7.863	5.160	6.976	3.761	6.927	1.336	nan	0.532	3.422	1.072	0.632	6.120
14897	chr9	21254954	21258898	+	0	NA	Intergenic	B1_Mur1|SINE|Alu	-8359	NM_153583	235040	Mm.440165	NM_153583	ENSMUSG00000002820	Atg4d	9830134P12Rik|APG4-D|Apg4d|Atg4dl|Autl4	autophagy related 4D, cysteine peptidase	protein-coding	5.318	2.063	0.719	5.253	5.099	3.173	3.728	6.817	4.763	4.555	3.949	4.081	3.282	4.865	4.209	5.399	3.101	5.579	3.171	2.774	2.220	4.016	2.306	1.615	5.983
9059	chr2	169977092	169981891	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-16304	NR_131974	446211	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	11.166	7.361	4.030	6.954	6.515	4.386	10.154	10.100	6.231	7.873	6.960	3.553	10.879	11.973	8.951	10.730	11.873	nan	nan	4.603	3.588	4.368	4.021	3.400	nan
15487	chr9	107525492	107533237	+	0	NA	TTS (NM_001174049)	TTS (NM_001174049)	-4581	NM_019704	56395	Mm.260153	NM_019704	ENSMUSG00000010045	Tmem115	C78915|Pl6|Pp6	transmembrane protein 115	protein-coding	4.833	7.224	2.304	7.336	3.200	2.073	2.662	3.898	nan	nan	4.687	2.758	1.848	3.555	3.340	nan	1.923	nan	3.333	1.822	2.443	2.676	1.849	1.513	6.130
6417	chr17	26116237	26118400	+	0	NA	intron (NM_021793, intron 3 of 12)	intron (NM_021793, intron 3 of 12)	4002	NM_021793	60455	Mm.304656	NM_021793	ENSMUSG00000024180	Tmem8	AW490096|M83|Tmem8a	transmembrane protein 8 (five membrane-spanning domains)	protein-coding	5.095	0.991	0.345	2.764	1.423	0.951	7.368	6.275	2.146	1.815	7.590	2.192	3.863	3.974	6.446	6.952	4.366	4.543	1.092	0.983	0.426	2.186	0.442	0.234	7.401
13305	chr7	77499488	77507913	+	0	NA	Intergenic	Intergenic	1074138	NM_008746	18213	Mm.33496	NM_008746	ENSMUSG00000059146	Ntrk3	AW125844|Ntrk3_tv3|TrkC	neurotrophic tyrosine kinase, receptor, type 3	protein-coding	8.018	2.559	0.756	9.050	5.722	3.141	9.219	7.537	5.937	12.079	9.541	6.965	7.307	9.008	7.071	8.687	6.457	8.440	4.157	4.715	4.737	8.500	5.339	5.751	12.394
9424	chr3	87312441	87314207	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-44557	NM_009690	11801	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	3.057	2.397	0.933	2.935	1.277	0.791	4.852	3.590	2.240	2.228	1.082	1.073	3.464	4.867	3.913	4.434	3.243	4.635	nan	0.318	0.414	1.000	0.381	0.104	6.075
5423	chr15	79186828	79192576	+	0	NA	intron (NR_029470, intron 2 of 4)	B3|SINE|B2	23636	NR_029470	100041655	Mm.483310	NR_029470	ENSMUSG00000075555	Gm10863	ENSMUSG00000075555	predicted gene 10863	ncRNA	5.102	nan	0.995	6.458	3.200	2.076	5.334	7.629	3.348	4.941	nan	1.489	4.957	5.437	5.129	6.983	4.211	7.134	3.633	1.787	1.464	nan	3.081	2.629	7.860
8712	chr2	136939228	136944053	+	0	NA	intron (NM_001038641, intron 2 of 7)	L1Md_F2|LINE|L1	42289	NM_001038641	74243	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	8.442	6.644	1.585	11.852	3.076	1.917	9.724	10.807	7.358	13.648	10.558	5.524	11.270	10.639	12.935	15.091	7.802	11.469	2.810	1.175	0.841	2.799	2.285	2.124	20.130
3102	chr11	120044816	120052848	+	0	NA	Intergenic	Intergenic	-1687	NM_007377	11302	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	6.178	nan	0.591	11.022	2.176	1.255	nan	8.453	6.535	nan	5.513	1.522	7.365	9.504	9.671	11.938	6.224	11.885	2.561	nan	1.359	5.203	1.458	1.473	14.254
7401	chr18	75714972	75716603	+	0	NA	Intergenic	Intergenic	-18091	NM_201354	269037	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	2.719	nan	0.564	2.144	1.643	0.560	2.947	5.335	2.660	2.622	2.453	2.083	5.472	4.307	3.395	4.441	2.354	3.751	0.786	nan	0.370	0.912	0.297	0.103	2.732
5361	chr15	76500899	76504289	+	0	NA	intron (NM_010046, intron 15 of 16)	intron (NM_010046, intron 15 of 16)	9224	NM_010046	13350	Mm.22633	NM_010046	ENSMUSG00000022555	Dgat1	ARAT|C75990|D15Ertd23e|Dgat	diacylglycerol O-acyltransferase 1	protein-coding	7.570	nan	2.123	5.635	4.644	3.558	11.114	12.356	4.674	7.680	nan	2.998	9.895	10.860	8.719	7.632	10.435	6.890	3.597	2.266	2.348	nan	3.048	3.111	9.192
15128	chr9	57786486	57805415	+	0	NA	intron (NM_019689, intron 6 of 7)	intron (NM_019689, intron 6 of 7)	-30090	NM_007713	102414	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	3.088	13.450	4.809	4.342	1.209	0.669	1.732	nan	2.156	2.827	1.354	1.427	1.324	2.137	2.159	2.270	0.820	3.211	0.845	1.062	0.896	0.966	0.637	0.518	3.411
4057	chr13	45183518	45185580	+	0	NA	Intergenic	B4|SINE|B4	-182453	NM_025772	94245	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	nan	0.819	0.661	nan	2.960	1.513	2.816	3.523	3.824	3.697	3.189	3.316	5.160	5.273	3.847	5.236	4.199	nan	2.037	nan	0.431	2.259	1.028	0.649	5.977
8414	chr2	84572483	84578868	+	0	NA	Intergenic	MTA_Mm-int|LTR|ERVL-MaLR	-68802	NR_046046	672763	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	OTTMUSG00000013441	predicted gene 13710	ncRNA	6.325	0.854	0.494	1.257	2.002	1.171	4.132	7.163	1.743	2.293	0.828	0.748	4.309	3.322	3.525	3.325	5.973	2.528	3.450	2.897	1.782	3.324	4.166	3.097	6.663
8329	chr2	70312676	70316188	+	0	NA	exon (NM_177376, exon 28 of 35)	exon (NM_177376, exon 28 of 35)	-160491	NM_022435	64406	Mm.423397	NM_022435	ENSMUSG00000075304	Sp5	-	trans-acting transcription factor 5	protein-coding	6.405	0.589	0.371	2.105	0.551	0.560	2.001	1.501	1.025	2.008	0.119	0.058	2.614	0.736	2.971	4.122	5.388	5.002	0.593	0.402	0.593	0.653	0.394	0.797	17.992
1360	chr10	66373178	66375055	+	0	NA	Intergenic	Intergenic	228820	NR_131070	77198	Mm.107617	NR_131070		4930407I19Rik	-	RIKEN cDNA 4930407I19 gene	ncRNA	4.281	1.731	1.099	3.182	2.622	2.001	4.110	3.270	2.900	3.342	3.704	2.804	3.722	3.535	3.129	4.261	2.245	3.403	0.766	0.644	0.522	0.885	0.568	0.331	5.127
2696	chr11	96372014	96375298	+	0	NA	Intergenic	PB1D10|SINE|Alu	7898	NM_008266	15407	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	0.448	nan	0.507	0.234	0.256	0.076	0.424	0.311	0.254	0.338	0.229	0.211	0.034	0.222	0.177	0.393	nan	0.379	9.007	nan	1.979	5.844	7.400	nan	0.269
14574	chr8	109260166	109262676	+	0	NA	Intergenic	Intergenic	79487	NR_002928	384864	Mm.390083	NR_002928		Gm1943	-	WD repeat domain 70 pseudogene	pseudo	1.323	2.853	2.064	0.678	0.490	0.759	1.530	2.612	1.181	1.074	5.955	6.337	1.504	1.831	0.879	1.149	1.174	0.938	1.134	1.607	1.315	nan	0.585	0.982	0.784
3620	chr12	93090679	93092156	+	0	NA	Intergenic	Intergenic	353406	NR_126436	75295	Mm.243878	NR_126436		4930559C10Rik	-	RIKEN cDNA 4930559C10 gene	ncRNA	1.506	0.878	0.697	0.463	0.771	0.412	1.391	1.109	0.614	0.811	0.481	0.808	0.605	0.751	0.936	0.655	1.962	nan	3.860	4.885	3.668	2.499	6.999	7.146	nan
5891	chr16	21641383	21647117	+	0	NA	exon (NM_001285894, exon 46 of 46)	exon (NM_001285894, exon 46 of 46)	50415	NM_001001881	72190	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	3.730	4.123	1.190	4.912	1.582	0.756	2.059	3.634	3.228	nan	2.101	1.189	3.828	3.806	3.396	7.266	2.572	4.643	1.211	1.456	1.248	4.766	0.714	0.615	6.311
233	chr1	60916331	60917566	+	0	NA	Intergenic	Intergenic	7923	NM_001281976	12477	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	4.067	2.317	0.347	2.827	1.437	0.410	2.899	4.804	3.201	2.229	1.655	1.759	4.139	3.203	5.876	5.559	2.404	3.709	1.682	1.106	0.601	2.506	0.912	0.076	3.617
6484	chr17	28599853	28605525	+	0	NA	exon (NM_016795, exon 8 of 16)	exon (NM_016795, exon 8 of 16)	19765	NM_016795	20815	Mm.15252	NM_016795	ENSMUSG00000004865	Srpk1	AU017960	serine/arginine-rich protein specific kinase 1	protein-coding	4.600	3.297	1.895	4.507	7.192	5.512	2.551	2.529	4.150	5.435	1.835	1.891	3.598	7.047	3.277	2.860	3.604	3.523	2.744	2.481	2.384	2.733	0.866	1.144	2.509
6217	chr16	92641546	92642661	+	0	NA	intron (NM_001111022, intron 5 of 6)	intron (NM_001111022, intron 5 of 6)	55226	NM_001111023	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	3.786	1.956	0.839	3.034	2.726	0.639	3.129	4.507	2.407	3.448	3.144	2.132	5.056	4.583	4.050	5.268	2.640	3.728	1.179	0.976	0.327	nan	0.763	0.627	5.138
6981	chr18	4134818	4136149	+	0	NA	Intergenic	PB1D10|SINE|Alu	-30349	NM_026092	67328	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	3.819	0.485	0.388	1.534	2.569	1.236	4.233	4.528	2.402	2.643	3.672	0.906	6.059	4.130	3.958	2.820	3.035	3.552	1.221	0.563	0.471	1.796	1.738	0.931	3.367
1490	chr10	79725862	79735499	+	0	NA	intron (NM_008226, intron 4 of 7)	ID_B1|SINE|B4	14046	NM_008226	15166	Mm.12956	NM_008226	ENSMUSG00000020331	Hcn2	BCNG2|HAC1|trls	hyperpolarization-activated, cyclic nucleotide-gated K+ 2	protein-coding	4.736	4.334	2.079	nan	4.517	3.477	3.646	3.450	3.861	5.074	2.380	1.939	3.685	5.360	nan	5.047	3.690	4.993	nan	1.999	1.984	2.755	2.165	2.391	6.275
2198	chr11	53621616	53623807	+	0	NA	Intergenic	Intergenic	-4046	NM_021283	16189	Mm.276360	NM_021283	ENSMUSG00000000869	Il4	BSF-1|Il-4	interleukin 4	protein-coding	3.227	1.795	1.042	4.433	2.689	1.622	1.295	1.200	2.483	2.011	1.345	1.221	0.598	1.526	1.149	2.048	1.199	2.679	nan	1.166	1.267	0.579	1.122	1.151	nan
2947	chr11	110218703	110220175	+	0	NA	intron (NM_147218, intron 13 of 38)	intron (NM_147218, intron 13 of 38)	32337	NM_147218	76184	Mm.159704	NM_147218	ENSMUSG00000044749	Abca6	6330565N06Rik	ATP-binding cassette, sub-family A (ABC1), member 6	protein-coding	3.410	0.656	0.547	nan	5.661	3.183	4.662	7.954	4.212	3.658	1.790	4.029	3.878	5.677	5.800	4.906	4.615	4.262	1.323	3.100	1.499	nan	3.148	2.697	2.365
4199	chr13	60780787	60782304	+	0	NA	TTS (NM_199148)	TTS (NM_199148)	4819	NM_199148	218275	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	2.309	0.415	0.508	1.796	2.993	1.613	1.836	1.974	1.991	2.588	0.961	0.736	1.907	4.354	2.755	2.197	1.795	3.120	1.167	1.426	0.586	0.638	0.983	0.254	nan
11262	chr5	64682178	64683328	+	0	NA	Intergenic	Intergenic	-72054	NR_045078	100042198	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	1.790	2.251	1.203	2.766	2.430	0.978	2.362	3.051	3.058	2.427	1.087	1.582	1.728	3.068	3.909	3.450	2.502	2.384	1.702	1.611	1.493	nan	2.529	2.514	1.900
4480	chr14	15664308	15668815	+	0	NA	Intergenic	L1VL2|LINE|L1	-227574	NM_146052	218763	Mm.138039	NM_146052	ENSMUSG00000045201	Lrrc3b	BC019794|LRP15	leucine rich repeat containing 3B	protein-coding	0.706	0.733	0.419	0.912	0.228	0.135	0.387	0.664	nan	0.615	0.646	0.414	0.187	0.423	0.529	0.777	0.253	0.625	2.970	0.783	0.700	nan	2.245	1.614	0.870
11123	chr5	31936705	31940576	+	0	NA	intron (NM_144541, intron 7 of 11)	intron (NM_144541, intron 7 of 11)	-197832	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	2.408	0.962	0.816	nan	2.579	1.277	2.433	2.624	4.063	2.896	7.126	3.506	2.671	4.595	3.500	3.025	1.809	3.891	2.403	0.856	0.848	2.240	1.422	1.363	2.169
10342	chr4	106573665	106575944	+	0	NA	intron (NM_053272, intron 5 of 8)	intron (NM_053272, intron 5 of 8)	13766	NM_053272	74754	Mm.133370	NM_053272	ENSMUSG00000034926	Dhcr24	2310076D10Rik|5830417J06Rik|mKIAA0018	24-dehydrocholesterol reductase	protein-coding	2.660	0.819	0.626	0.976	1.516	1.162	4.779	nan	1.206	2.112	0.483	0.870	1.455	4.029	2.533	3.425	3.013	nan	0.997	1.459	1.394	1.113	0.985	1.018	4.482
4105	chr13	49055538	49057846	+	0	NA	intron (NM_029361, intron 23 of 27)	intron (NM_029361, intron 23 of 27)	88580	NR_015601	68128	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	3.543	1.715	1.777	nan	3.759	3.094	2.907	4.539	3.498	2.601	6.466	5.216	3.151	4.420	2.315	2.737	2.820	nan	1.660	2.394	1.203	1.051	1.650	1.389	nan
2288	chr11	61008717	61012160	+	0	NA	Intergenic	Intergenic	-12126	NM_001267593	16515	Mm.4970	NM_010603	ENSMUSG00000042529	Kcnj12	IRK-2|IRK2|Kir2.2|MB-IRK2	potassium inwardly-rectifying channel, subfamily J, member 12	protein-coding	6.166	0.536	0.163	3.427	2.219	0.947	4.714	5.392	6.224	8.391	1.471	2.252	5.604	5.198	4.055	6.093	4.942	7.269	nan	0.946	0.597	0.515	1.131	0.701	4.295
11338	chr5	73064397	73067230	+	0	NA	intron (NM_028194, intron 45 of 62)	intron (NM_028194, intron 45 of 62)	58909	NM_173403	231290	Mm.491387	NM_173403	ENSMUSG00000029219	Slc10a4	E130304D01	solute carrier family 10 (sodium/bile acid cotransporter family), member 4	protein-coding	4.096	0.503	0.551	2.183	6.527	4.811	6.497	5.846	3.380	5.534	4.413	2.056	4.825	7.432	4.485	4.989	6.449	4.932	1.003	1.494	0.822	0.796	1.061	1.116	3.293
15408	chr9	97584981	97587917	+	0	NA	intron (NM_022319, intron 2 of 17)	intron (NM_022319, intron 2 of 17)	-216491	NM_030219	78911	Mm.108347	NM_030219	ENSMUSG00000032451	Trim42	4930486B16Rik	tripartite motif-containing 42	protein-coding	2.652	0.394	0.365	1.243	0.565	0.250	0.567	1.685	1.831	1.500	0.368	0.138	1.611	1.496	1.901	3.751	2.292	2.156	0.797	0.501	0.328	0.628	0.651	0.321	5.399
2954	chr11	112898481	112907140	+	0	NA	Intergenic	MER131|SINE?|SINE?	-77682	NR_130164	76393	Mm.86795	NR_130164		1700012H19Rik	-	RIKEN cDNA 1700012H19 gene	ncRNA	1.651	0.741	0.374	nan	0.385	0.086	2.382	1.999	nan	nan	0.530	0.517	1.638	nan	2.365	2.687	1.395	nan	1.429	1.622	1.065	nan	1.218	0.730	2.820
4841	chr14	75246108	75248326	+	0	NA	intron (NM_019775, intron 1 of 10)	URR1A|DNA|hAT-Charlie	4930	NM_019775	56373	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	3.433	6.801	4.331	2.431	2.383	1.561	1.515	1.461	2.026	2.337	5.520	3.409	1.324	nan	1.477	2.176	1.821	1.693	0.910	1.832	1.105	0.834	0.556	0.548	1.949
5120	chr15	36802228	36812069	+	0	NA	Intergenic	Intergenic	-10219	NM_001253806	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	5.942	1.364	0.815	4.232	2.448	1.410	9.414	10.377	5.314	5.295	3.791	2.615	9.428	6.729	7.025	6.560	6.697	6.907	1.160	1.073	0.815	nan	0.819	0.593	4.964
13147	chr7	50834355	50836192	+	0	NA	intron (NM_001037906, intron 16 of 19)	intron (NM_001037906, intron 16 of 19)	236083	NM_172901	243996	Mm.443270	NM_172901	ENSMUSG00000084234	4933405O20Rik	-	RIKEN cDNA 4933405O20 gene	protein-coding	8.020	6.749	2.929	6.672	3.842	1.859	7.674	8.914	5.532	3.982	4.106	4.168	6.275	6.917	7.344	7.216	7.215	6.954	4.902	4.941	1.704	5.694	4.412	2.183	9.301
842	chr1	167559326	167565675	+	0	NA	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-35862	NM_009107	20183	Mm.3475	NM_009107	ENSMUSG00000015843	Rxrg	Nr2b3	retinoid X receptor gamma	protein-coding	5.553	1.442	0.551	nan	1.068	0.758	2.870	4.796	nan	3.148	1.936	1.667	nan	3.139	nan	6.107	3.945	3.369	6.300	3.410	2.720	nan	nan	4.478	nan
4288	chr13	94826605	94828165	+	0	NA	intron (NM_009321, intron 1 of 3)	intron (NM_009321, intron 1 of 3)	38442	NM_009321	21371	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	2.528	1.447	0.672	4.906	1.344	1.548	1.717	2.052	1.393	6.541	0.801	0.549	2.087	3.562	4.044	5.221	nan	3.982	0.565	0.402	1.047	1.693	0.288	0.994	7.308
13604	chr7	118454941	118460748	+	0	NA	Intergenic	RLTR20C2_MM|LTR|ERVK	-14292	NM_138649	110058	Mm.156558	NM_138649	ENSMUSG00000058420	Syt17	Bk	synaptotagmin XVII	protein-coding	0.360	0.620	0.196	0.357	0.167	0.031	0.375	0.389	0.261	0.209	0.287	0.344	0.227	nan	0.278	0.547	0.258	0.400	2.188	2.103	0.795	5.850	1.314	0.529	0.509
2000	chr11	19885777	19894321	+	0	NA	Intergenic	B3A|SINE|B2	-34393	NM_033523	114716	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	nan	nan	1.159	3.433	3.457	2.116	2.778	3.111	3.347	3.247	1.793	2.064	3.697	4.373	3.980	4.148	2.407	3.890	0.877	1.107	0.629	1.285	0.674	0.615	2.700
14441	chr8	89886765	89888208	+	0	NA	Intergenic	RMER15|LTR|ERVL	460766	NM_172913	244579	Mm.302755	NM_172913	ENSMUSG00000043668	Tox3	500-9|BC052044|C230068E13|CAGF9|Tnrc9	TOX high mobility group box family member 3	protein-coding	1.216	0.300	0.210	0.252	0.327	0.095	3.425	6.612	nan	1.537	0.232	0.194	3.924	2.645	2.066	1.586	2.238	1.843	nan	0.407	0.601	0.383	0.758	0.775	0.299
2531	chr11	79888460	79903456	+	0	NA	Intergenic	B1_Mur2|SINE|Alu	66429	NM_144826	216987	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	4.888	4.986	2.916	4.531	5.183	4.146	nan	3.390	3.692	4.587	2.880	1.992	3.031	5.268	nan	nan	4.012	nan	1.704	2.774	nan	1.752	2.224	2.419	3.055
12689	chr6	124625914	124651608	+	0	NA	Intergenic	Intergenic	-2676	NM_173864	317677	Mm.483270	NM_173864	ENSMUSG00000079343	C1s2	C1sb|EG317677|Gm5077	complement component 1, s subcomponent 2	protein-coding	5.444	nan	0.817	3.179	3.578	2.679	8.069	7.209	3.934	3.620	2.047	1.863	6.225	7.016	5.862	7.152	6.351	5.375	1.408	1.373	1.501	2.513	1.158	0.985	5.938
13039	chr7	27944667	27953837	+	0	NA	Intergenic	Intergenic	-19822	NM_028538	73430	Mm.379224	NM_028538	ENSMUSG00000070709	Zfp974	1700049G17Rik|AV321011|BB026409	zinc finger protein 974	protein-coding	6.336	12.442	5.020	7.077	3.876	1.987	5.526	8.463	3.780	5.859	3.466	1.999	4.738	6.909	5.798	6.176	4.880	6.310	2.862	2.469	1.619	2.495	2.776	2.381	7.711
8199	chr2	36068551	36074529	+	0	NA	intron (NM_029309, intron 4 of 4)	ORSL-2b|DNA|hAT-Tip100	22067	NM_029309	75495	Mm.276332	NM_029309	ENSMUSG00000026894	Morn5	1700010A17Rik	MORN repeat containing 5	protein-coding	7.964	1.191	0.675	3.410	3.013	1.486	7.841	7.960	3.491	4.859	1.667	1.048	7.111	6.512	5.665	8.978	8.778	5.480	0.617	0.906	0.623	0.561	0.620	0.334	10.449
7211	chr18	42925768	42927985	+	0	NA	intron (NM_028392, intron 1 of 8)	intron (NM_028392, intron 1 of 8)	-27370	NR_073583	72930	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding	2.863	0.613	0.743	1.486	3.039	0.831	4.242	2.915	2.139	1.916	1.619	1.632	2.225	nan	2.258	nan	2.134	2.698	1.538	0.766	0.568	1.888	0.931	0.563	0.950
13228	chr7	56601175	56604435	+	0	NA	Intergenic	Intergenic	363034	NM_021879	18431	Mm.137052	NM_021879	ENSMUSG00000030450	Oca2	D7H15S12|D7Icr28RN|D7Nic1|p|p<cas>	oculocutaneous albinism II	protein-coding	nan	1.339	0.625	4.153	3.265	2.333	2.686	2.757	3.027	4.260	0.908	1.454	2.828	5.197	4.091	5.289	2.555	3.808	0.795	0.699	0.712	0.909	0.547	0.556	4.128
9317	chr3	54916006	54919703	+	0	NA	Intergenic	Intergenic	-1967	NM_177854	329641	Mm.51187	NM_177854	ENSMUSG00000056306	Sertm1	6030405A18Rik	serine rich and transmembrane domain containing 1	protein-coding	7.625	4.722	1.469	5.427	5.331	3.414	8.341	3.390	3.426	5.647	5.314	2.046	7.522	8.460	5.739	5.512	5.005	nan	1.981	2.531	1.531	4.281	1.993	1.825	6.683
2410	chr11	70641755	70643728	+	0	NA	TTS (NM_010326)	TTS (NM_010326)	3619	NM_010326	14723	Mm.377085	NM_010326	ENSMUSG00000050675	Gp1ba	GPIba|GPIbalpha	glycoprotein 1b, alpha polypeptide	protein-coding	1.970	0.919	0.725	1.206	2.329	1.151	3.360	1.856	1.965	1.485	1.515	0.753	3.028	3.809	2.923	2.554	2.010	1.555	0.422	0.690	0.585	0.470	nan	0.758	nan
12590	chr6	113429981	113439041	+	0	NA	5' UTR (NM_178373, exon 2 of 6)	5' UTR (NM_178373, exon 2 of 6)	1244	NM_178373	14311	Mm.10026	NM_178373	ENSMUSG00000030278	Cidec	CIDE-3|Fsp27	cell death-inducing DFFA-like effector c	protein-coding	5.833	2.626	1.375	3.717	2.338	1.932	7.706	9.017	2.648	4.407	2.097	1.503	4.765	7.660	6.961	10.707	7.598	5.485	2.167	1.625	1.171	2.055	nan	1.565	8.024
8707	chr2	136716609	136718370	+	0	NA	intron (NM_011428, intron 1 of 7)	intron (NM_011428, intron 1 of 7)	4039	NM_001291056	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	10.435	10.333	4.630	8.922	5.496	2.019	6.337	10.483	5.822	10.180	8.037	4.322	9.703	10.958	8.169	10.204	9.901	8.630	5.843	3.480	2.186	5.910	3.436	2.471	11.738
6557	chr17	34253541	34262259	+	0	NA	Intergenic	Intergenic	-5327	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	nan	19.761	6.112	13.754	8.289	5.521	14.100	10.100	7.301	15.454	10.075	4.566	10.037	13.789	12.219	14.083	9.253	11.274	6.445	4.474	4.527	6.956	5.085	5.269	20.071
14553	chr8	108673687	108676373	+	0	NA	Intergenic	Intergenic	-39614	NM_007496	11906	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	7.469	5.486	3.101	4.370	3.560	2.321	3.345	4.277	3.450	4.171	2.640	2.171	3.364	4.243	3.886	6.305	4.334	4.258	3.013	3.470	2.780	nan	2.578	1.783	6.870
1737	chr10	111373230	111375159	+	0	NA	Intergenic	Intergenic	75515	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	6.720	1.506	0.637	6.119	4.958	2.340	5.041	3.212	6.313	6.870	3.043	2.239	7.837	7.702	6.977	7.851	5.651	7.196	1.637	0.921	0.923	2.327	0.869	0.809	8.054
3143	chr11	121579786	121583249	+	0	NA	intron (NM_029878, intron 22 of 38)	intron (NM_029878, intron 22 of 38)	-62175	NM_178763	319530	Mm.11395	NM_178763	ENSMUSG00000039238	Zfp750	A030007D23Rik|Znf750	zinc finger protein 750	protein-coding	5.087	0.932	0.540	3.975	6.103	2.720	3.718	4.887	6.027	6.095	2.709	1.438	5.353	6.989	5.497	7.543	2.792	6.853	1.010	nan	0.501	0.703	1.804	1.289	5.693
4814	chr14	70230181	70231318	+	0	NA	intron (NM_001304991, intron 10 of 14)	L1MEg|LINE|L1	-23078	NM_011366	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	1.902	15.278	7.099	1.760	0.915	0.323	3.689	2.638	1.213	2.260	1.394	0.791	2.747	3.191	3.488	6.876	2.484	3.020	3.991	nan	0.405	2.450	1.348	1.483	1.743
5128	chr15	37359321	37362031	+	0	NA	intron (NM_026496, intron 15 of 15)	intron (NM_026496, intron 15 of 15)	-64878	NM_029113	74892	Mm.107630	NM_029113	ENSMUSG00000022288	4930447A16Rik	-	RIKEN cDNA 4930447A16 gene	protein-coding	1.408	1.073	0.640	1.455	0.597	0.269	0.616	1.055	0.449	0.298	0.513	1.213	0.189	0.493	0.379	0.647	0.903	0.874	3.518	4.368	2.377	5.002	7.418	4.992	nan
5789	chr16	10768932	10773292	+	0	NA	Intergenic	Intergenic	14424	NM_009896	12703	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	3.711	9.074	3.492	1.911	1.190	0.480	nan	1.931	1.337	1.813	1.211	1.550	1.409	1.039	1.377	1.787	1.723	1.671	1.208	1.790	1.106	1.485	1.006	0.783	3.593
6334	chr17	12918019	12920676	+	0	NA	intron (NM_001290712, intron 2 of 10)	intron (NM_001290712, intron 2 of 10)	3018	NM_013686	21454	Mm.229342	NM_013686	ENSMUSG00000068039	Tcp1	AI528772|CCT|Cct1|Ccta|TRic|Tcp-1|Tp63|c-cpn|p63	t-complex protein 1	protein-coding	2.641	1.541	1.268	2.372	2.908	1.713	5.091	3.241	2.416	2.170	3.123	2.474	2.232	2.708	3.702	4.115	nan	3.058	3.705	3.127	4.047	3.585	3.960	3.681	4.489
10680	chr4	134289548	134292289	+	0	NA	Intergenic	ORR1A4|LTR|ERVL-MaLR	-3072	NM_146156	230809	Mm.22778	NM_146156	ENSMUSG00000050890	Pdik1l	BC027088|stk35l2	PDLIM1 interacting kinase 1 like	protein-coding	8.166	3.617	1.104	5.762	4.343	2.989	3.821	8.892	5.702	6.280	6.920	5.347	5.262	7.181	5.987	8.509	3.438	5.915	2.453	2.102	2.652	2.819	nan	2.420	5.442
9493	chr3	90378158	90380278	+	0	NA	Intergenic	MTE2a|LTR|ERVL-MaLR	10720	NM_001316688	26568	Mm.45519	NM_011988	ENSMUSG00000027932	Slc27a3	Acsvl3|FATP-3|FATP3|Vlcs-3	solute carrier family 27 (fatty acid transporter), member 3	protein-coding	3.165	0.888	0.495	1.693	2.104	0.966	5.486	4.749	2.725	2.186	5.189	2.689	4.861	5.296	3.908	2.719	2.891	3.554	nan	0.822	0.573	0.854	0.474	0.339	3.197
3411	chr12	72099214	72101595	+	0	NA	TTS (NM_028687)	TTS (NM_028687)	14565	NM_024205	104771	Mm.258935	NM_024205	ENSMUSG00000005078	Jkamp	1200003C05Rik|2310047L11Rik|Jamp	JNK1/MAPK8-associated membrane protein	protein-coding	6.185	7.383	4.217	3.354	3.230	2.281	3.168	2.530	2.983	2.822	2.591	1.758	2.986	3.778	2.947	nan	3.772	2.598	1.310	2.587	1.990	1.209	1.444	1.353	4.278
11243	chr5	54106822	54108555	+	0	NA	intron (NM_001081103, intron 7 of 11)	intron (NM_001081103, intron 7 of 11)	109165	NM_001081103	116873	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	1.713	0.516	0.447	2.696	1.047	0.732	2.274	1.319	2.379	2.045	0.367	0.270	4.251	3.859	4.576	4.810	5.338	5.173	2.087	0.811	0.816	0.872	1.957	1.569	3.657
9532	chr3	95302093	95304889	+	0	NA	intron (NM_001085383, intron 3 of 12)	B2_Mm1t|SINE|B2	3313	NM_001085383	71790	Mm.218844	NM_023628	ENSMUSG00000015702	Anxa9	1110003P15Rik|2310069F17Rik	annexin A9	protein-coding	5.632	1.112	0.671	2.345	2.148	1.337	1.614	1.148	1.376	2.108	nan	0.648	1.385	1.749	1.320	2.207	1.483	2.237	0.920	1.023	0.685	0.751	1.174	0.747	2.116
3284	chr12	36211581	36212881	+	0	NA	intron (NM_027699, intron 3 of 4)	intron (NM_027699, intron 3 of 4)	5971	NM_027699	71156	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	7.019	1.121	0.604	3.152	2.111	0.698	3.093	3.634	3.150	1.774	5.078	3.405	4.766	3.205	4.072	4.238	2.834	6.028	nan	1.141	0.173	0.580	0.820	0.638	3.861
7048	chr18	16966429	16967369	+	0	NA	Intergenic	L1Md_T|LINE|L1	-68609	NR_130158	75433	Mm.60907	NR_130158	ENSMUSG00000087170	1700001G01Rik	-	RIKEN cDNA 1700001G01 gene	ncRNA	nan	1.281	0.804	0.647	0.203	0.390	0.659	0.550	0.343	1.387	0.073		0.106	0.639	0.574	0.415	0.353	0.407	5.517	3.128	5.002	7.240	6.413	10.546	1.199
10643	chr4	132925638	132930510	+	0	NA	Intergenic	ID_B1|SINE|B4	-5523	NM_001163792	230789	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	4.936	5.809	2.137	5.837	3.460	1.644	4.516	5.588	4.403	5.381	3.440	2.756	4.419	6.848	5.239	6.495	3.268	5.803	3.647	3.408	2.036	4.464	3.082	1.778	6.060
2122	chr11	46113699	46126547	+	0	NA	intron (NM_001291891, intron 8 of 22)	intron (NM_001291891, intron 8 of 22)	-7781	NM_001311209	11492	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	1.565	14.435	6.386	1.503	0.467	0.288	0.383	nan	0.765	0.988	0.551	0.344	0.301	0.517	0.904	nan	0.554	nan	nan	1.198	0.980	nan	nan	1.082	1.113
15438	chr9	102633021	102639972	+	0	NA	Intergenic	Intergenic	10200	NM_181394	69010	Mm.2000	NM_181394	ENSMUSG00000035048	Anapc13	1810004D07Rik|APC13|SWM1	anaphase promoting complex subunit 13	protein-coding	4.709	1.379	0.369	4.641	2.152	0.647	4.411	4.872	4.585	4.965	3.284	2.172	5.586	7.396	5.466	6.447	2.989	6.624	0.887	0.792	0.560	1.073	1.814	0.961	7.281
10100	chr4	55153648	55156568	+	0	NA	Intergenic	Intergenic	-194934	NM_009011	19359	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	4.361	nan	0.606	1.106	1.817	0.976	4.260	2.859	2.303	3.095	1.638	0.961	4.021	3.535	3.072	3.639	1.637	4.060	nan	1.231	1.169	3.563	1.213	1.382	4.326
280	chr1	72424616	72431927	+	0	NA	3' UTR (NM_001045533, exon 4 of 4)	3' UTR (NM_001045533, exon 4 of 4)	108293	NM_001045533	381270	Mm.337023	NM_001045533	ENSMUSG00000039372	March4	BC056494|mKIAA1399	membrane-associated ring finger (C3HC4) 4	protein-coding	13.001	0.686	0.335	3.817	3.857	2.022	4.121	5.729	6.673	7.371	7.425	4.290	8.394	nan	3.946	nan	9.056	nan	1.430	1.650	1.095	1.555	0.683	0.639	7.877
13514	chr7	108326149	108328340	+	0	NA	Intergenic	Intergenic	-3570	NM_146497	258490	Mm.377532	NM_146497	ENSMUSG00000109497	Olfr492	MOR204-18	olfactory receptor 492	protein-coding	4.872	1.936	1.425	4.214	3.565	1.415	5.110	5.596	2.728	3.778	1.499	2.141	5.883	7.201	5.887	nan	4.711	nan	4.499	4.112	0.781	4.639	3.647	1.533	2.905
14940	chr9	31922554	31927147	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-11565	NM_013800	12023	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	2.516	0.717	0.698	1.375	0.745	0.435	3.146	5.979	1.660	1.157	9.743	4.935	2.581	1.956	1.639	nan	1.155	2.386	2.544	1.929	1.020	2.092	2.146	1.645	0.660
3498	chr12	80988050	80993924	+	0	NA	Intergenic	Intergenic	-22908	NM_001177561	20493	Mm.486361	NM_011387	ENSMUSG00000021135	Slc10a1	Ntcp	solute carrier family 10 (sodium/bile acid cotransporter family), member 1	protein-coding	3.089	1.301	0.671	2.900	1.614	0.656	1.153	1.768	1.795	2.183	1.321	2.176	1.742	2.104	1.896	2.883	2.925	2.563	2.298	3.365	1.752	5.447	2.709	1.803	3.165
8777	chr2	147996300	147998004	+	0	NA	Intergenic	Intergenic	48312	NM_001291067	15376	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	2.679	1.055	0.229	5.607	2.315	0.852	0.850	1.315	2.470	2.101	0.935	0.956	0.924	1.484	1.511	2.957	1.473	3.440	nan	0.856	0.427	1.064	0.229	0.149	2.380
7619	chr19	20476572	20483186	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-12836	NR_015502	320092	Mm.482524	NR_015502		E030003E18Rik	1700127G21Rik	RIKEN cDNA E030003E18 gene	ncRNA	3.168	0.486	0.570	1.889	1.954	1.286	3.546	4.727	3.699	2.644	6.762	3.147	3.966	3.969	3.354	3.629	4.292	5.728	1.718	0.707	0.380	2.014	1.847	1.073	1.517
15175	chr9	62920690	62923686	+	0	NA	intron (NM_019663, intron 4 of 13)	MER103C|DNA|hAT-Charlie	58691	NM_019663	56469	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	3.583	0.953	0.621	2.158	1.553	1.088	1.870	nan	2.327	2.887	1.115	0.746	2.064	2.582	2.041	3.111	1.725	4.111	0.943	0.744	0.706	0.528	1.161	0.602	5.662
13181	chr7	52712078	52718159	+	0	NA	Intergenic	Lx3A|LINE|L1	-699402	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	8.573	5.977	2.009	7.099	5.948	2.953	6.408	11.193	4.916	6.467	6.202	3.378	7.030	9.716	7.779	8.731	5.988	7.226	2.466	2.216	1.294	2.888	2.607	1.942	10.534
8346	chr2	72203379	72205764	+	0	NA	intron (NM_001204165, intron 15 of 30)	intron (NM_001204165, intron 15 of 30)	-81066	NM_023057	65964	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	5.197	1.122	0.544	5.415	1.762	0.409	3.108	7.416	4.262	5.600	2.166	1.349	6.683	6.956	7.543	9.487	7.295	7.427	1.660	0.733	0.051	1.216	0.471	0.217	5.580
1509	chr10	80422796	80428794	+	0	NA	intron (NM_001164148, intron 3 of 18)	B1_Mus2|SINE|Alu	7858	NM_001164150	21423	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	5.721	2.840	1.290	7.134	3.480	2.240	3.117	4.893	3.480	3.973	2.550	1.556	3.946	6.727	nan	5.604	3.801	5.536	nan	2.717	3.078	8.135	4.143	3.652	5.964
4177	chr13	56803342	56806264	+	0	NA	intron (NM_001302373, intron 7 of 12)	(TG)n|Simple_repeat|Simple_repeat	90986	NM_001302372	26946	Mm.62409	NM_012035	ENSMUSG00000021541	Trpc7	TRP7|Trrp8	transient receptor potential cation channel, subfamily C, member 7	protein-coding	7.938	7.893	2.832	8.687	5.731	4.272	6.611	5.934	5.654	12.314	4.999	3.785	6.555	8.374	7.850	7.728	4.748	nan	4.592	3.194	3.322	4.747	3.828	5.611	12.020
8610	chr2	122170512	122172480	+	0	NA	intron (NM_080510, intron 3 of 6)	intron (NM_080510, intron 3 of 6)	10796	NM_080510	70928	Mm.379188	NM_080510	ENSMUSG00000033368	Trim69	4921519C19Rik|Rnf36|Trif|Trimless	tripartite motif-containing 69	protein-coding	2.455	0.661	0.131	1.613	0.243	0.120	0.731	1.277	1.565	1.746	7.467	2.082	2.280	2.070	1.562	1.731	0.988	4.424	0.370	0.388	0.125	0.650	0.310	0.091	7.515
8099	chr2	30772188	30776479	+	0	NA	Intergenic	Intergenic	27404	NM_198000	73598	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	4.152	0.910	0.517	2.636	4.606	3.480	6.657	8.415	4.143	4.298	7.304	4.430	5.780	7.103	4.070	4.662	3.737	4.541	1.519	0.926	0.898	1.518	1.151	0.880	5.183
11766	chr5	131989999	131997737	+	0	NA	intron (NM_177047, intron 4 of 18)	intron (NM_177047, intron 4 of 18)	113599	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA	2.704	0.281	0.185	1.821	2.962	1.921	4.394	5.998	3.853	5.218	2.024	1.881	4.007	6.051	nan	5.033	3.056	nan	nan	0.934	0.815	1.024	nan	1.288	3.863
10426	chr4	117794139	117797310	+	0	NA	Intergenic	L1MA7|LINE|L1	-30058	NM_029416	75753	Mm.3848	NM_029416	ENSMUSG00000048626	Klf17	7420700M05Rik|AA420409|AU043468|C85123|D4Ertd561e|Gzf|Zfp393	Kruppel-like factor 17	protein-coding	2.338	0.746	0.740	1.037	0.992	1.187	2.330	1.401	1.584	1.553	1.803	1.300	1.412	1.883	1.703	nan	1.262	2.016	4.465	5.000	3.918	4.909	4.320	3.679	4.907
5631	chr15	98978662	98981157	+	0	NA	Intergenic	Intergenic	-6056	NR_045991	75951	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	1.303	0.578	0.563	0.396	0.736	0.607	1.510	2.720	0.711	0.615	0.853	1.145	2.351	0.969	1.126	nan	3.142	1.429	6.110	4.408	5.292	7.081	5.604	5.997	1.551
13483	chr7	106555536	106559112	+	0	NA	Intergenic	Lx9|LINE|L1	87321	NM_001277179	434223	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	2.250	2.348	0.819	2.083	1.381	0.994	0.902	2.220	1.963	2.582	6.809	3.636	1.064	nan	1.665	nan	1.307	nan	nan	0.894	0.774	1.144	0.891	0.585	2.999
12228	chr6	50633844	50636569	+	0	NA	Intergenic	Intergenic	19187	NM_021892	60531	Mm.157158	NM_021892	ENSMUSG00000029831	Npvf	Rfrp	neuropeptide VF precursor	protein-coding	3.469	1.788	1.422	2.627	4.724	1.511	10.114	7.071	4.854	4.851	6.076	5.780	6.093	6.341	8.089	7.611	4.092	nan	nan	1.771	0.738	1.887	2.563	1.564	2.952
6611	chr17	36115655	36118217	+	0	NA	non-coding (NR_046286, exon 10 of 10)	non-coding (NR_046286, exon 10 of 10)	4499	NM_010395	15024	Mm.426031	NM_010395	ENSMUSG00000079491	H2-T10	H-2T10	histocompatibility 2, T region locus 10	protein-coding	6.825	13.358	4.393	8.032	4.405	2.569	9.979	6.556	2.832	8.507	4.321	2.902	5.743	9.370	8.407	11.203	6.102	6.347	5.045	3.135	3.761	6.004	4.997	5.587	16.486
1325	chr10	59357833	59366691	+	0	NA	intron (NM_001316370, intron 9 of 13)	intron (NM_001316370, intron 9 of 13)	38966	NM_001316370	18451	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	5.421	15.555	5.648	7.570	2.660	1.205	2.787	5.219	4.221	5.785	5.337	4.405	3.068	5.221	5.822	6.468	3.105	5.878	nan	2.862	2.616	6.766	2.928	2.234	nan
9512	chr3	94584334	94591866	+	0	NA	Intergenic	Intergenic	-5384	NM_029721	76742	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	7.811	1.288	0.791	5.019	5.171	2.457	11.097	8.906	5.252	5.728	nan	3.597	10.861	12.265	8.781	9.221	7.907	8.705	5.514	3.972	2.556	7.176	4.451	2.884	10.278
1643	chr10	94869410	94884003	+	0	NA	intron (NM_018797, intron 5 of 30)	L1ME4c|LINE|L1	67872	NM_018797	54712	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	9.808	1.872	0.463	8.357	5.168	3.099	6.613	3.156	6.184	10.155	nan	2.563	4.853	8.064	7.561	6.646	5.847	10.671	nan	1.094	1.120	nan	1.046	1.261	12.878
8105	chr2	30970145	30972306	+	0	NA	Intergenic	RLTR20D|LTR|ERVK	-3307	NM_144884	30931	Mm.154994	NM_144884	ENSMUSG00000026849	Tor1a	DQ2|Dyt1|torsinA	torsin family 1, member A (torsin A)	protein-coding	1.955	9.470	5.587	2.795	1.895	1.024	0.904	0.862	nan	1.465	0.963	0.858	0.538	0.936	1.245	1.118	1.218	1.687	0.884	1.142	1.613	0.567	1.008	0.787	1.235
14096	chr8	26709524	26714760	+	0	NA	Intergenic	Intergenic	112281	NR_045904	72316	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	10.136	10.777	5.576	9.349	8.707	6.667	5.567	9.369	5.346	9.242	6.266	4.593	6.413	8.827	7.128	8.405	7.792	6.617	5.223	7.309	7.390	nan	6.536	7.048	10.076
9498	chr3	92817164	92819081	+	0	NA	Intergenic	Lx7|LINE|L1	9125	NM_028629	433619	Mm.28359	NM_028629	ENSMUSG00000059832	Kprp	1110001M24Rik|AA589586	keratinocyte expressed, proline-rich	protein-coding	1.427	0.389	0.137	0.434	0.197	0.302	0.665	2.722	0.396	0.583	3.006	0.430	0.347	4.649	3.709	nan	0.441	1.171	nan	0.207	0.251	0.213	0.136	0.250	1.701
8375	chr2	75568348	75571381	+	0	NA	Intergenic	Intergenic	-89395	NM_146130	229279	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	7.565	2.181	1.366	3.548	4.349	2.609	5.411	8.333	5.935	6.094	4.360	2.246	6.046	9.132	nan	nan	6.124	6.310	1.231	1.437	0.929	0.700	1.023	1.046	nan
4277	chr13	90972817	90974790	+	0	NA	intron (NM_025770, intron 5 of 7)	intron (NM_025770, intron 5 of 7)	50681	NM_024175	66475	Mm.306302	NM_024175	ENSMUSG00000049517	Rps23	2410044J15Rik	ribosomal protein S23	protein-coding	3.357	0.543	0.261	1.228	0.744	0.364	3.874	1.524	1.601	1.784	0.383	1.109	2.670	1.753	3.660	4.293	3.395	2.924	0.676	0.591	0.313	0.607	0.612	0.399	3.841
8037	chr2	26457616	26466637	+	0	NA	intron (NM_008714, intron 33 of 33)	intron (NM_008714, intron 33 of 33)	7993	NR_105962	102465602		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	6.361	2.836	0.893	5.948	4.907	3.186	4.735	8.583	5.193	8.433	3.714	2.656	6.766	8.711	5.089	7.528	6.646	7.323	1.106	0.975	1.280	1.847	0.866	1.393	11.153
14765	chr8	126723018	126728389	+	0	NA	Intergenic	Intergenic	-132267	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	7.093	nan	0.584	3.791	3.349	1.768	7.160	6.918	4.785	5.891	1.802	2.803	8.292	9.904	7.935	9.438	7.348	5.488	nan	1.013	0.890	nan	0.711	nan	10.689
12440	chr6	90455355	90459154	+	0	NA	Intergenic	Intergenic	-5372	NM_023184	66277	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	6.208	0.960	0.172	7.426	3.483	1.817	5.625	10.004	5.139	7.813	3.799	2.831	7.061	9.358	5.782	11.032	5.361	8.350	nan	1.387	0.549	3.575	0.869	0.513	6.558
8080	chr2	30052899	30064211	+	0	NA	Intergenic	L1M5|LINE|L1	-3441	NM_023871	56086	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	3.472	1.690	0.671	2.916	3.311	2.120	3.919	9.493	nan	3.384	1.520	1.688	4.803	4.728	4.560	6.036	4.941	4.043	2.845	1.973	1.862	2.637	2.516	2.441	4.106
4075	chr13	46789886	46795805	+	0	NA	intron (NM_010617, intron 21 of 37)	MTD|LTR|ERVL-MaLR	-64996	NM_175749	218210	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	5.068	1.347	0.988	nan	1.970	1.310	4.261	3.022	3.278	2.894	2.073	0.954	4.185	3.245	3.009	3.123	3.222	4.974	1.128	nan	0.470	0.538	0.649	0.402	nan
15701	chrX	33867943	33870765	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-167005	NM_001145038	100040732	Mm.465135	NM_001145038	ENSMUSG00000078324	Btbd35f14	Gm2933	BTB domain containing 35, family member 14	protein-coding	2.567	1.045	0.404	3.724	1.297	0.894	0.881	3.748	1.244	3.293	1.214	1.018	2.026	2.682	2.370	3.160	0.865	3.171	2.517	1.478	1.346	3.028	2.525	2.194	5.670
1502	chr10	80154391	80166253	+	0	NA	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-7519	NM_007705	12696	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	6.114	17.199	6.560	6.761	2.632	2.045	3.278	4.326	3.453	4.346	2.928	1.678	3.445	4.520	4.821	5.227	3.478	4.763	nan	1.957	2.537	2.175	1.391	1.508	6.613
8057	chr2	27594847	27596461	+	0	NA	Intergenic	Intergenic	80507	NM_080848	140858	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	2.901	4.167	1.117	3.091	1.174	0.805	4.766	6.370	1.407	2.517	3.951	3.081	1.663	3.536	2.363	5.072	4.203	2.564	0.851	0.872	0.845	0.684	0.579	0.399	5.505
8175	chr2	34914871	34918826	+	0	NA	Intergenic	ORR1A4-int|LTR|ERVL-MaLR	-2872	NM_028716	74016	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	6.349	0.761	0.798	4.643	3.101	2.311	1.690	3.678	6.888	8.166	0.865	1.871	6.556	5.818	4.877	9.261	7.567	9.444	0.859	1.031	0.784	0.469	0.532	0.748	4.884
11419	chr5	91286782	91287883	+	0	NA	Intergenic	Intergenic	-4256	NR_040428	100503265	Mm.125059	NR_040428	ENSMUSG00000107198	Gm19619	-	predicted gene, 19619	ncRNA	2.436	0.745	0.380	1.249	1.243	0.491	1.993	2.008	0.952	1.741	1.809	0.859	1.945	3.374	2.517	2.768	1.086	2.220	0.272	0.247	0.223	0.213	0.184	0.121	2.200
4743	chr14	62863533	62865225	+	0	NA	intron (NM_175546, intron 1 of 11)	intron (NM_175546, intron 1 of 11)	-1163	NR_105860	102465311		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	4.382	2.603	1.270	1.936	1.496	0.571	1.517	1.193	2.155	2.926	0.953	0.919	1.167	2.600	1.570	2.182	1.170	1.828	0.787	0.763	0.373	1.070	0.765	0.150	3.250
6930	chr17	85071356	85072373	+	0	NA	intron (NM_145984, intron 9 of 14)	intron (NM_145984, intron 9 of 14)	18403	NM_145984	213760	Mm.259035	NM_145984	ENSMUSG00000024127	Prepl	2810457N15Rik|9530014L06Rik|D030028O16Rik|mKIAA0436	prolyl endopeptidase-like	protein-coding	1.635	0.592		1.827	0.470	0.196	4.013	4.537	nan	2.509	0.506	0.990	3.600	3.958	4.247	6.490	2.959	4.292	0.720	0.447	0.147	0.453	0.400	0.132	3.243
3488	chr12	80640013	80662641	+	0	NA	intron (NM_026244, intron 1 of 6)	intron (NM_026244, intron 1 of 6)	7112	NM_026244	328133	Mm.238279	NM_026244	ENSMUSG00000048833	Slc39a9	2010002A02Rik|2610511I23Rik|4833420E20Rik|AW209151	solute carrier family 39 (zinc transporter), member 9	protein-coding	6.475	1.139	0.795	3.882	4.030	2.420	6.276	5.186	6.027	6.254	7.110	2.694	9.426	7.230	6.489	nan	8.019	6.290	1.690	1.788	1.230	2.235	1.680	1.133	6.488
4665	chr14	52738461	52739560	+	0	NA	Intergenic	IAPEz-int|LTR|ERVK	-243315	NM_001170918	57269	Mm.88822	NM_020512	ENSMUSG00000059887	Olfr1507	MOR244-1|Mor28|Or28	olfactory receptor 1507	protein-coding	3.426	2.366	1.173	2.498	2.023	1.030	2.894	2.762	2.969	4.283	2.673	1.910	3.050	3.378	4.971	6.111	1.861	3.679	2.243	1.307	1.082	2.791	1.701	1.422	6.692
2935	chr11	109220955	109233604	+	0	NA	exon (NM_011268, exon 18 of 19)	exon (NM_011268, exon 18 of 19)	70902	NM_001165934	19739	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	5.739	15.036	6.368	7.383	4.272	1.847	3.411	4.240	nan	nan	3.680	2.890	4.337	6.338	5.521	6.253	3.433	6.606	3.098	2.080	1.434	nan	1.908	1.578	5.378
6949	chr17	87700776	87706985	+	0	NA	intron (NM_008628, intron 8 of 15)	intron (NM_008628, intron 8 of 15)	31323	NM_008628	17685	Mm.4619	NM_008628	ENSMUSG00000024151	Msh2	AI788990	mutS homolog 2	protein-coding	8.901	1.992	1.292	6.241	6.410	3.696	12.014	7.809	6.470	8.176	8.653	2.898	8.669	12.633	9.454	12.105	7.930	8.565	2.913	2.729	2.189	2.131	2.517	2.102	14.017
4270	chr13	83694069	83699845	+	0	NA	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-31149	NR_015561	320203	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik	RIKEN cDNA C130071C03 gene	ncRNA	0.601	6.873	4.838	0.771	0.318	0.087	0.358	0.357	0.589	0.511	0.352	0.356	0.183	0.345	0.395	0.642	0.596	0.847	0.578	0.530	0.179	0.647	0.346	0.228	0.312
5078	chr15	25913499	25915507	+	0	NA	intron (NM_001034851, intron 3 of 8)	RSINE1|SINE|B4	-19049	NM_001277318	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	9.866	14.914	5.509	10.227	6.545	5.222	11.196	13.047	5.490	10.049	6.704	4.425	7.894	8.693	9.586	9.603	9.208	9.443	5.633	3.479	6.424	5.865	6.565	8.213	15.566
11887	chr5	140581119	140587063	+	0	NA	Intergenic	Intergenic	-19024	NM_030022	77998	Mm.160040	NM_030022	ENSMUSG00000036586	Grifin	E130101O17Rik	galectin-related inter-fiber protein	protein-coding	6.593	1.670	1.127	3.325	3.316	1.677	6.501	6.300	4.968	5.161	5.268	2.502	5.842	9.432	6.567	5.525	6.927	5.400	2.187	1.511	1.132	1.171	nan	1.679	5.360
1706	chr10	107858478	107859673	+	0	NA	intron (NM_001177567, intron 21 of 57)	intron (NM_001177567, intron 21 of 57)	53059	NM_001177567	628870	Mm.336090	NM_001177567	ENSMUSG00000091455	Otogl	EG628870|Gm6924	otogelin-like	protein-coding	3.908	0.838	0.535	2.087	2.358	0.587	1.411	2.428	3.021	3.493	3.278	1.675	3.654	3.990	2.670	4.428	3.027	4.982	1.027	0.476	0.132	1.000	0.405	0.230	2.595
12595	chr6	113602750	113615101	+	0	NA	intron (NM_133937, intron 1 of 2)	CT-rich|Low_complexity|Low_complexity	4153	NM_133937	101314	Mm.485793	NM_133937	ENSMUSG00000033940	Brk1	6720456B07Rik|AW011779	BRICK1, SCAR/WAVE actin-nucleating complex subunit	protein-coding	6.489	7.038	4.145	5.514	7.477	5.079	5.992	7.208	4.721	5.131	4.154	2.650	5.615	7.518	4.891	7.387	5.629	4.817	1.574	2.521	2.360	1.605	nan	1.261	5.017
9322	chr3	57089868	57100111	+	0	NA	Intergenic	Intergenic	206930	NM_008536	17112	Mm.856	NM_008536	ENSMUSG00000027800	Tm4sf1	L6|M3s1	transmembrane 4 superfamily member 1	protein-coding	5.695	0.851	0.669	5.308	3.442	1.747	4.801	3.344	5.237	5.308	3.965	3.306	6.390	7.064	4.073	nan	3.681	5.991	1.286	1.184	0.937	1.298	0.986	0.411	3.539
6282	chr16	97978369	97987937	+	0	NA	Intergenic	Intergenic	-14194	NR_130962	245305	Mm.148033	NR_130962		B230307C23Rik	EG245305|OTTMUSG00000028475	RIKEN cDNA B230307C23 gene	ncRNA	5.537	1.222	0.458	3.907	2.974	1.653	6.227	9.908	nan	4.559	5.448	4.588	7.676	6.532	nan	9.442	5.167	7.165	nan	1.348	0.897	3.480	2.007	1.527	8.734
11492	chr5	102980044	102981053	+	0	NA	intron (NM_001318131, intron 6 of 11)	intron (NM_001318131, intron 6 of 11)	77844	NM_001310686	26414	Mm.39253	NM_009158	ENSMUSG00000046709	Mapk10	C230008H04Rik|JNK3|JNK3B1|JNK3B2|SAPK(beta)|Serk2|p493F12|p54bSAPK	mitogen-activated protein kinase 10	protein-coding	5.288	0.747	0.758	1.384	2.314	1.100	6.801	1.952	1.956	2.703	0.996	0.708	3.507	3.936	3.029	4.012	3.263	2.772	0.950	1.331	0.703	1.024	1.927	1.497	4.505
8477	chr2	101911678	101913693	+	0	NA	Intergenic	Intergenic	26423	NM_029635	76501	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	5.323	0.795	0.146	3.082	0.778	0.210	2.784	2.570	3.238	3.878	0.289	0.469	6.364	4.132	4.934	8.962	3.059	7.204	0.522	0.231	0.061	0.456	0.253	0.047	9.624
8359	chr2	73135673	73140750	+	0	NA	intron (NM_030091, intron 7 of 7)	intron (NM_030091, intron 7 of 7)	76236	NM_030091	67059	Mm.22661	NM_025942	ENSMUSG00000027108	Ola1	2510025G09Rik|2810405J23Rik|2810409H07Rik|Gtpbp9|PTD004	Obg-like ATPase 1	protein-coding	4.106	0.604	0.632	nan	0.814	0.762	2.441	1.323	3.033	2.892	0.455	0.589	6.010	2.975	nan	nan	6.176	3.748	0.751	0.559	0.338	0.516	0.371	0.470	nan
5658	chr15	99890125	99893908	+	0	NA	Intergenic	B3|SINE|B2	-16560	NM_001113545	65970	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	1.255	8.471	4.580	1.268	0.954	0.474	1.031	1.445	1.176	1.282	0.950	0.793	0.891	0.823	1.078	nan	0.953	1.479	0.987	1.131	0.991	1.436	1.203	1.067	1.091
9979	chr4	35102303	35105224	+	0	NA	intron (NM_178061, intron 1 of 3)	intron (NM_178061, intron 1 of 3)	-48292	NM_199157	387510	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	8.037	4.384	1.275	9.980	2.227	1.288	6.374	6.905	5.772	9.611	3.621	2.787	7.838	8.319	10.543	10.187	3.533	9.674	1.369	0.740	0.747	1.683	0.859	0.626	15.588
7719	chr19	34377150	34384107	+	0	NA	Intergenic	Intergenic	89969	NM_001146708	14102	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	nan	8.178	5.208	1.167	1.006	0.478	1.004	nan	0.802	0.900	0.688	0.651	0.268	0.928	0.796	0.956	nan	1.026	0.300	0.530	0.358	0.488	0.266	0.274	0.787
1147	chr10	19903839	19907664	+	0	NA	intron (NM_001161825, intron 2 of 8)	ORR1D1|LTR|ERVL-MaLR	1923	NM_008822	18634	Mm.338363	NM_008822	ENSMUSG00000020003	Pex7	MmPEX7	peroxisomal biogenesis factor 7	protein-coding	4.604	0.671	0.309	2.630	2.345	1.788	2.036	5.051	nan	3.100	3.539	2.142	3.626	4.172	3.274	4.156	3.114	4.733	1.223	0.447	0.288	1.073	0.728	0.771	4.834
7173	chr18	38155806	38159863	+	0	NA	Intergenic	Intergenic	51928	NM_029357	75599	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	5.025	1.559	0.512	5.852	2.968	1.706	2.857	2.059	2.173	3.405	2.331	1.151	1.782	3.554	2.141	2.803	1.650	3.049	0.911	2.516	1.104	1.033	1.525	1.335	4.417
8121	chr2	32005232	32013213	+	0	NA	intron (NM_172268, intron 18 of 35)	L1_Mus1|LINE|L1	34772	NM_172268	227720	Mm.289686	NM_172268	ENSMUSG00000001855	Nup214	BC039282|CAN|D2H9S46E	nucleoporin 214	protein-coding	8.998	9.108	3.581	8.404	6.502	3.840	7.835	8.717	4.836	7.728	5.930	4.230	7.426	8.439	7.655	10.225	8.401	7.514	4.831	3.474	2.769	4.537	5.537	4.132	12.654
12897	chr7	3595421	3598725	+	0	NA	Intergenic	RMER3D-int|LTR|ERVK	19084	NM_175632	232790	Mm.358882	NM_175632	ENSMUSG00000054594	Oscar	mOSCAR|mOSCAR-M1|mOSCAR-M2|mOSCAR-M3	osteoclast associated receptor	protein-coding	7.050	9.612	3.368	7.619	3.907	2.609	6.113	6.811	4.283	8.790	5.266	3.557	5.977	7.873	6.830	7.004	5.714	6.977	4.845	3.408	2.582	5.263	3.781	3.956	10.062
9866	chr3	146344819	146349951	+	0	NA	Intergenic	Intergenic	31559	NR_033542	100038607	Mm.365888	NR_033542	ENSMUSG00000105602	Gm10636	ENSMUSG00000074175	predicted gene 10636	ncRNA	1.493	1.164	0.662	1.201	1.165	0.647	0.872	3.209	0.943	0.827	1.065	0.859	1.017	1.159	1.402	1.499	0.978	1.136	2.771	4.168	2.900	5.877	4.747	3.464	1.681
15293	chr9	72525442	72530366	+	0	NA	intron (NR_045735, intron 1 of 2)	MTC-int|LTR|ERVL-MaLR	3954	NR_045735	75115	Mm.280755	NR_045735	ENSMUSG00000096986	4930509E16Rik	-	RIKEN cDNA 4930509E16 gene	ncRNA	2.639	0.850	1.326	2.112	4.001	4.285	1.516	1.703	2.292	2.424	1.018	1.193	1.963	2.748	nan	2.007	1.991	2.150	nan	1.145	1.616	0.941	1.676	2.236	2.215
15467	chr9	106295060	106297515	+	0	NA	intron (NM_027354, intron 7 of 10)	intron (NM_027354, intron 7 of 10)	15226	NM_027354	70235	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	0.522	1.248	0.526	1.470	1.115	0.427	0.681	0.685	nan	nan	6.524	1.841	0.492	1.106	0.634	nan	0.507	nan	0.428	0.520	0.422	0.584	0.365	0.277	1.688
4870	chr14	77092664	77099528	+	0	NA	intron (NM_175369, intron 5 of 5)	intron (NM_175369, intron 5 of 5)	59324	NM_001310649	108811	Mm.102168	NM_175369	ENSMUSG00000034795	Ccdc122	4933415L06Rik	coiled-coil domain containing 122	protein-coding	3.230	0.853	0.520	2.283	2.871	1.647	5.848	8.012	3.690	4.131	4.744	2.215	3.428	4.341	4.501	5.805	3.400	3.110	1.572	1.273	0.792	1.932	1.724	1.259	2.457
3902	chr13	24852957	24854202	+	0	NA	intron (NR_131787, intron 1 of 19)	MER89|LTR|ERV1	8448	NR_131787	210108	Mm.261514	NM_001081051	ENSMUSG00000006711	D130043K22Rik	4930451E12Rik|Kiaa0319	RIKEN cDNA D130043K22 gene	protein-coding	4.684	11.699	4.786	5.946	2.462	2.065	3.338	6.058	3.785	5.359	5.856	3.800	3.462	6.222	6.309	7.811	3.197	6.611	5.437	1.626	3.650	7.270	3.475	4.118	8.686
11153	chr5	34134114	34135420	+	0	NA	intron (NR_040703, intron 3 of 3)	(A)n|Simple_repeat|Simple_repeat	16027	NR_040703	75357	Mm.410806	NR_040703	ENSMUSG00000106902	4930557J02Rik	-	RIKEN cDNA 4930557J02 gene	ncRNA	2.241	0.577	0.443	1.873	1.743	0.997	2.053	0.981	2.675	4.074	0.543	0.515	1.698	3.881	nan	2.574	2.444	3.128	0.859	0.651	0.474	0.478	0.670	0.572	2.726
7425	chr18	80819824	80822182	+	0	NA	intron (NM_001201569, intron 11 of 29)	intron (NM_001201569, intron 11 of 29)	-107932	NM_001164109	18018	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	7.173	nan	2.851	3.271	6.429	4.343	11.564	9.851	4.836	8.006	1.945	1.609	9.424	10.999	4.409	9.519	9.428	5.392	0.915	nan	2.079	1.233	0.914	0.936	6.725
4675	chr14	55190936	55197242	+	0	NA	Intergenic	Intergenic	-27918	NM_027790	71412	Mm.85484	NM_027790	ENSMUSG00000022209	Dhrs2	5430405K24Rik|Hep27	dehydrogenase/reductase member 2	protein-coding	6.959	nan	0.448	5.396	3.722	1.626	5.603	7.087	3.852	6.742	8.592	3.757	4.939	7.589	6.885	7.976	3.018	7.153	0.824	0.950	0.642	0.847	0.792	0.628	13.488
7181	chr18	38411478	38412883	+	0	NA	Intergenic	RSINE1|SINE|B4	-6795	NM_022996	65113	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	3.791	0.923	0.652	3.325	1.276	0.637	2.067	1.672	1.962	1.576	6.674	1.307	3.468	1.830	1.792	2.765	1.935	4.628	1.387	1.563	1.578	5.003	0.713	0.549	3.731
7383	chr18	74729650	74732389	+	0	NA	intron (NM_201600, intron 29 of 38)	intron (NM_201600, intron 29 of 38)	47436	NR_028560	100217466		NR_028560		Scarna17	MBII-119	small Cajal body-specific RNA 17	ncRNA	3.665	nan	0.914	3.333	2.594	0.931	3.911	4.840	4.326	5.109	1.032	0.729	7.155	5.012	5.552	4.794	3.191	4.386	1.246	nan	0.310	1.393	1.741	1.085	5.100
13699	chr7	126124798	126127300	+	0	NA	intron (NM_001311143, intron 12 of 23)	intron (NM_001311143, intron 12 of 23)	-43638	NM_001101488	269994	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	1.805	0.861	0.111	3.200	1.641	1.038	3.249	4.198	2.217	2.079	0.856	0.952	3.974	4.045	nan	4.697	2.647	3.416	0.586	0.615	0.515	1.179	0.225	0.231	4.291
14011	chr8	11687903	11692744	+	0	NA	Intergenic	Intergenic	4191	NR_028307	624710	Mm.482623	NR_028307	ENSMUSG00000110177	Gm6524	EG624710	katanin p60 (ATPase-containing) subunit A1 pseudogene	pseudo	1.187	0.443	0.552	0.718	1.495	0.907	1.005	0.711	1.020	1.104	0.451	0.333	0.563	1.018	0.893	1.087	1.230	1.214	1.206	2.191	1.566	4.597	0.765	0.798	1.299
1139	chr10	19723446	19726119	+	0	NA	intron (NM_172786, intron 1 of 6)	intron (NM_172786, intron 1 of 6)	12195	NM_172786	237313	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	3.905	5.339	3.856	2.324	2.963	1.809	1.045	2.093	nan	2.908	1.246	1.206	1.580	3.144	1.789	2.506	2.307	2.913	3.129	2.558	1.808	2.445	3.577	2.682	nan
1319	chr10	59032577	59033863	+	0	NA	intron (NM_172788, intron 3 of 9)	L1Md_A|LINE|L1	188627	NM_001024911	103080	Mm.346842	NM_001024910	ENSMUSG00000019917	Sept10	4921515A04Rik|9430099J10Rik|AA408298|AI874685	septin 10	protein-coding	3.003	2.607	1.137	2.193	1.850	1.124	2.381	2.409	2.399	2.930	2.812	2.445	2.665	3.043	2.709	2.762	1.850	2.624	nan	1.482	1.263	0.825	0.965	0.257	2.478
1826	chr10	124706483	124709961	+	0	NA	Intergenic	Intergenic	239148	NR_028310	75030	Mm.159403	NR_028310		4930503E24Rik	-	eukaryotic translation initiation factor 3, subunit I pseudogene	pseudo	8.497	nan	0.420	5.136	3.253	1.498	2.826	7.108	4.157	5.286	1.496	1.196	6.165	6.138	4.385	6.463	8.152	5.463	1.379	1.097	1.157	1.379	nan	1.043	4.207
9698	chr3	108311420	108312829	+	0	NA	intron (NM_001271599, intron 3 of 20)	RLTR11A2|LTR|ERVK	28060	NM_019972	20661	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	0.928	0.577	0.417	0.930	0.848	0.562	1.475	1.563	0.748	0.555	0.813	0.800	0.903	0.719	nan	0.968	0.982	0.635	2.154	3.903	5.880	3.643	3.748	4.805	1.087
9062	chr2	170043115	170048648	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	24790	NR_033634	100043910	Mm.468546	NR_033632	ENSMUSG00000097065	A630075F10Rik	4831414D02|Gm4722	RIKEN cDNA A630075F10 gene	ncRNA	5.111	7.897	3.413	3.767	2.941	1.293	5.044	5.099	2.982	2.785	4.778	1.907	4.125	5.209	5.122	5.952	7.172	nan	3.602	4.381	3.479	4.408	2.785	2.510	4.185
1747	chr10	115251394	115260459	+	0	NA	Intergenic	Intergenic	-4433	NM_025706	66687	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding	5.909	0.596	0.416	3.738	5.201	2.800	8.605	7.441	5.236	3.877	1.173	3.704	7.199	8.250	6.893	6.950	7.644	7.512	1.007	0.753	0.586	0.791	1.273	0.951	4.627
12962	chr7	19812149	19818523	+	0	NA	intron (NM_033601, intron 2 of 8)	intron (NM_033601, intron 2 of 8)	7419	NM_033601	12051	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	5.175	5.934	2.077	5.777	2.971	2.022	4.754	9.009	4.106	4.512	3.207	2.085	6.532	6.702	7.377	7.726	4.122	6.670	3.526	1.710	1.775	4.114	1.823	1.957	7.802
14744	chr8	125563858	125567977	+	0	NA	Intergenic	Intergenic	-18721	NR_015535	75930	Mm.195663	NR_015535	ENSMUSG00000110629	4930567H12Rik	4930579P07Rik	RIKEN cDNA 4930567H12 gene	ncRNA	11.912	12.489	4.420	nan	9.468	6.351	8.221	11.693	6.622	12.955	6.906	5.029	8.341	10.269	9.388	11.982	10.310	nan	nan	4.717	5.640	nan	4.770	nan	13.872
820	chr1	164787334	164790073	+	0	NA	Intergenic	Intergenic	-8029	NM_019759	56429	Mm.28935	NM_019759	ENSMUSG00000026574	Dpt	1810032B19Rik|5033416F05Rik|EQ-1|Eq1	dermatopontin	protein-coding	2.072	0.935	0.450	3.032	0.959	0.438	2.251	1.180	nan	1.840	0.827	0.411	4.592	5.537	nan	5.771	1.781	2.666	0.734	0.743	0.522	nan	nan	0.311	2.017
6988	chr18	4802972	4805539	+	0	NA	Intergenic	Intergenic	-8231	NR_045881	100038439	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	ENSMUSG00000073646	predicted gene 10556	ncRNA	4.487	0.905	0.688	2.338	2.403	1.318	4.533	1.430	1.875	2.237	1.204	0.391	3.443	4.813	3.019	3.079	2.333	3.731	0.794	0.604	0.667	1.072	0.654	0.587	3.604
13030	chr7	26570861	26575241	+	0	NA	intron (NM_001302792, intron 8 of 8)	intron (NM_001302792, intron 8 of 8)	38028	NM_001048219	233001	Mm.11889	NM_194056	ENSMUSG00000054102	Nlrp9a	D7Ertd565e|Nalp-theta|Nalp9a	NLR family, pyrin domain containing 9A	protein-coding	4.613	2.800	1.214	2.909	2.598	1.147	1.937	1.810	1.374	2.798	2.003	1.617	1.387	3.153	1.718	2.127	1.666	1.665	0.636	0.952	0.873	0.538	0.636	0.533	3.733
14939	chr9	31834755	31843225	+	0	NA	Intergenic	Intergenic	74295	NM_013800	12023	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	0.557	0.953	0.405	1.680	0.562	0.438	0.532	0.983	0.758	1.032	1.907	1.361	0.416	0.421	0.733	nan	0.470	0.864	5.277	3.279	2.619	5.861	4.850	4.970	0.816
1799	chr10	120683751	120685389	+	0	NA	Intergenic	(CGGGG)n|Simple_repeat|Simple_repeat	-81162	NR_038000	70874	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	4.566	0.695	0.231	4.319	2.930	1.126	2.428	1.265	4.756	6.819	0.426	0.685	4.683	5.284	4.325	7.616	3.717	6.620	0.965	0.834	0.549	0.551	0.749	0.954	4.203
5698	chr15	101240032	101248344	+	0	NA	Intergenic	Intergenic	-19002	NR_045328	380977	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	8.085	1.065	0.486	4.874	5.220	2.432	11.558	14.003	5.013	7.227	8.355	3.657	10.173	10.325	7.604	nan	6.808	7.680	7.336	3.827	3.515	7.154	7.158	5.747	9.395
6666	chr17	46140176	46143169	+	0	NA	exon (NM_029338, exon 2 of 5)	exon (NM_029338, exon 2 of 5)	2526	NM_029338	75564	Mm.17993	NM_029338	ENSMUSG00000023966	Rsph9	1700027N10Rik	radial spoke head 9 homolog (Chlamydomonas)	protein-coding	3.213	0.580	0.218	2.780	3.117	1.822	4.843	6.514	2.838	3.908	1.252	1.577	3.222	5.744	4.756	5.582	3.592	4.339	3.768	1.176	1.254	3.704	2.624	2.045	6.023
14647	chr8	119884896	119889436	+	0	NA	Intergenic	B3|SINE|B2	-23194	NM_009462	22224	Mm.256910	NM_009462	ENSMUSG00000031826	Usp10	2610014N07Rik|UBPO|Uchrp|mKIAA0190	ubiquitin specific peptidase 10	protein-coding	4.067	2.754	0.925	2.899	3.987	2.057	5.021	6.046	2.515	3.025	2.013	1.271	4.075	4.315	5.654	5.656	3.390	4.707	0.956	0.727	0.693	1.500	0.549	0.545	5.007
3716	chr12	110077827	110081259	+	0	NA	Intergenic	MER44B|DNA|TcMar-Tigger	78530	NR_045466	67280	Mm.390495	NR_045466		3110009F21Rik	-	RIKEN cDNA 3110009F21 gene	ncRNA	5.412	0.804	0.414	4.069	2.244	0.774	6.129	6.177	nan	nan	2.092	0.407	6.581	7.127	6.095	9.820	8.618	6.282	2.904	1.295	1.515	3.825	1.161	0.881	11.585
5579	chr15	95573453	95578573	+	0	NA	Intergenic	MTEa|LTR|ERVL-MaLR	-47761	NM_001289653	54003	Mm.3959	NM_016743	ENSMUSG00000022454	Nell2	A330108N19Rik|R75516|mel91	NEL-like 2	protein-coding	0.689	0.610	0.480	0.786	0.216	0.197	0.470	0.954	0.381	0.526	0.281	0.195	0.325	0.344	0.411	nan	0.559	0.522	4.739	2.704	1.450	5.482	3.999	2.606	0.494
7307	chr18	61994763	61999290	+	0	NA	intron (NM_172628, intron 12 of 16)	intron (NM_172628, intron 12 of 16)	43951	NM_172628	225608	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	7.455	nan	0.371	4.027	8.035	4.043	2.611	nan	5.123	7.009	5.535	1.213	nan	9.078	3.729	4.034	3.237	7.300	nan	0.448	0.298	nan	0.512	0.194	6.800
3014	chr11	116711475	116716340	+	0	NA	Intergenic	RLTR49|LTR|ERVK	-19247	NM_009180	20446	Mm.3947	NM_009180	ENSMUSG00000057286	St6galnac2	II|ST6GalNAc|Siat7|Siat7b	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	protein-coding	7.910	12.017	3.270	8.923	4.462	2.582	5.146	nan	5.065	10.131	7.402	3.408	6.185	8.503	8.640	9.143	5.117	7.895	5.763	nan	2.814	6.204	3.869	3.714	10.455
8703	chr2	135483585	135486374	+	0	NA	Intergenic	Intergenic	79149	NR_039540	100628568		NR_039540	ENSMUSG00000092830	Mir3963	mmu-mir-3963|mu-mir-3963	microRNA 3963	ncRNA	5.000	2.551	0.354	8.043	2.643	1.685	4.148	4.936	2.735	7.246	2.633	1.252	3.433	3.612	4.109	6.160	5.829	6.559	5.707	1.960	3.913	5.637	4.317	6.357	8.869
11731	chr5	125586477	125588265	+	0	NA	intron (NM_001190352, intron 1 of 8)	intron (NM_001190352, intron 1 of 8)	54953	NM_001190352	208151	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding	5.414	6.003	3.396	3.789	4.474	2.688	3.910	3.735	2.634	3.804	4.241	2.750	1.614	5.506	3.841	2.731	1.910	2.965	2.835	2.796	1.226	2.122	nan	1.150	3.891
866	chr1	172758877	172760684	+	0	NA	Intergenic	Intergenic	61724	NM_007768	12944	Mm.28767	NM_007768	ENSMUSG00000037942	Crp	AI255847	C-reactive protein, pentraxin-related	protein-coding	1.959	0.715	0.364	1.667	3.423	1.625	5.160	1.607	3.345	2.848	2.055	3.129	6.127	3.881	3.298	5.107	3.229	5.035	0.892	0.617	0.324	nan	nan	0.505	2.296
1453	chr10	76365706	76366719	+	0	NA	intron (NM_008787, intron 36 of 41)	B3|SINE|B2	-20921	NM_001081419	64451	Mm.33183	NM_001081419	ENSMUSG00000020231	Dip2a	4931420H10Rik|AI426328|Dip2|Kiaa0184-hp|mKIAA0184	disco interacting protein 2 homolog A	protein-coding	4.294	0.908	0.760	4.736	2.303	1.360	1.169	1.175	2.596	3.703	2.846	2.180	1.482	3.580	nan	2.362	0.828	3.464	nan	1.502	0.605	1.884	1.723	0.630	2.561
5454	chr15	80863300	80866618	+	0	NA	intron (NM_144812, intron 6 of 24)	intron (NM_144812, intron 6 of 24)	66349	NM_177124	213988	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	4.536	7.001	1.990	2.867	1.500	0.594	5.357	8.433	2.530	2.605	nan	1.055	4.728	3.869	6.544	4.800	2.536	4.452	0.687	0.396	0.554	nan	0.596	0.281	6.179
10594	chr4	131046845	131053697	+	0	NA	Intergenic	Intergenic	-39797	NR_130167	77835	Mm.348412	NR_130167	ENSMUSG00000086262	A930031H19Rik	A930004I12Rik	RIKEN cDNA A930031H19 gene	ncRNA	1.091	0.419	0.248	0.329	0.070	0.054	5.259	0.367	0.473	0.404	0.153	0.142	1.360	1.313	nan	4.111	0.524	1.108	0.879	1.081	0.831	2.144	0.813	0.611	5.629
10136	chr4	59593154	59595376	+	0	NA	intron (NM_001301367, intron 4 of 11)	(TATG)n|Simple_repeat|Simple_repeat	12702	NM_024255	72479	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	6.839	8.377	2.956	7.709	2.870	1.216	4.363	6.243	5.554	6.630	4.608	3.444	5.065	6.567	7.774	9.771	3.990	8.462	4.491	1.393	1.422	13.326	1.801	1.605	10.228
5118	chr15	36780822	36788226	+	0	NA	intron (NM_001253806, intron 2 of 5)	B3|SINE|B2	6408	NM_001253807	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	2.951	0.928	0.760	2.375	1.629	0.874	3.664	6.741	2.547	2.939	2.908	1.863	4.504	4.629	4.203	3.409	2.368	4.159	1.367	0.802	0.469	nan	1.118	0.775	nan
7363	chr18	69586675	69589242	+	0	NA	intron (NM_013685, intron 8 of 19)	intron (NM_013685, intron 8 of 19)	242237	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	3.563	0.879	0.576	5.154	1.575	0.489	1.009	0.986	2.615	2.600	1.773	1.463	1.050	1.569	1.810	2.400	1.562	3.734	1.842	1.179	0.839	2.801	0.704	0.735	1.812
770	chr1	157882419	157885083	+	0	NA	Intergenic	L1Md_A|LINE|L1	357581	NM_001159986	89867	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	15.393	16.620	5.796	13.632	8.265	4.344	9.488	7.371	7.543	13.184	9.467	3.889	10.154	10.989	9.107	14.167	10.423	11.189	7.136	3.827	3.084	5.674	4.291	4.177	16.469
13186	chr7	52822920	52826577	+	0	NA	Intergenic	Intergenic	-809032	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	9.229	5.855	4.154	4.298	6.242	4.400	5.943	15.577	5.786	8.154	5.237	4.468	5.909	12.753	5.792	9.288	9.911	6.682	3.199	3.814	3.771	2.926	3.508	2.612	5.540
11688	chr5	123331489	123335262	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-11073	NM_029850	77045	Mm.151960	NM_029850	ENSMUSG00000029438	Bcl7a	4432415N06Rik|AI448316	B cell CLL/lymphoma 7A	protein-coding	3.740	1.729	0.987	0.713	1.668	0.834	2.959	5.486	1.870	nan	3.840	1.273	3.472	2.066	nan	4.462	2.997	nan	nan	1.136	0.889	1.248	nan	0.576	nan
9366	chr3	65728763	65734313	+	0	NA	intron (NM_001166659, intron 5 of 12)	intron (NM_001166659, intron 5 of 12)	65310	NM_001166659	624866	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	3.826	4.161	1.850	2.558	1.890	1.068	5.669	4.669	2.931	2.405	7.218	6.242	4.886	7.017	3.191	nan	1.456	3.666	1.007	0.840	0.812	1.592	0.717	0.787	8.082
8518	chr2	112082102	112087117	+	0	NA	Intergenic	L1Md_T|LINE|L1	8090	NM_146450	258442	Mm.377505	NM_146450	ENSMUSG00000074945	Olfr1314	MOR245-2	olfactory receptor 1314	protein-coding	2.562	1.054	0.598	1.207	0.694	0.589	2.586	5.236	1.089	0.873	1.451	1.389	2.606	1.999	2.589	2.900	3.829	2.463	0.553	0.426	0.438	nan	0.278	0.280	3.339
641	chr1	135141152	135144657	+	0	NA	intron (NM_177081, intron 9 of 9)	intron (NM_177081, intron 9 of 9)	-3930	NM_026823	68724	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	3.966	1.360	0.528	nan	1.289	0.637	8.484	7.476	1.981	1.778	1.581	2.450	5.067	5.339	4.922	8.989	4.104	3.093	1.608	1.027	0.841	1.643	2.600	2.634	7.172
15282	chr9	71607528	71608653	+	0	NA	Intergenic	L1M4|LINE|L1	-15730	NM_001033208	102371	Mm.27585	NM_001033208	ENSMUSG00000041361	Myzap	AA407270|AV006038|Gcom1|Gm640|Grinl1a7|Myozap	myocardial zonula adherens protein	protein-coding	5.455	0.767	0.120	5.220	2.740	2.924	6.504	6.305	5.754	6.155	2.917	2.777	6.843	7.381	6.631	9.349	4.629	8.268	2.223	0.923	1.124	1.033	1.493	1.185	13.611
4734	chr14	61224201	61225529	+	0	NA	intron (NM_011892, intron 7 of 7)	intron (NM_011892, intron 7 of 7)	33625	NM_011892	24053	Mm.72173	NM_011892	ENSMUSG00000035296	Sgcg	35kDa|5430420E18Rik|AI642964|gamma-SG	sarcoglycan, gamma (dystrophin-associated glycoprotein)	protein-coding	4.760	nan	0.578	1.923	2.038	1.103	3.063	4.490	3.045	4.162	4.423	2.392	3.151	4.638	3.250	3.415	2.277	3.924	1.139	1.327	0.554	0.707	0.959	0.776	5.023
616	chr1	134161926	134164622	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-19130	NM_007695	12654	Mm.38274	NM_007695	ENSMUSG00000064246	Chil1	AW208766|Brp39|Chi3l1|Gp39	chitinase-like 1	protein-coding	10.126	2.376	1.101	nan	3.815	1.854	3.835	5.313	4.572	4.524	5.179	1.027	4.796	6.195	3.998	nan	3.438	5.753	1.027	0.495	0.682	1.036	0.976	0.612	nan
2962	chr11	113397374	113401010	+	0	NA	intron (NM_027216, intron 5 of 9)	intron (NM_027216, intron 5 of 9)	166623	NM_001166503	69806	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	6.236	nan	0.348	4.374	5.829	3.732	nan	6.222	5.714	7.455	5.652	2.884	7.286	6.715	6.192	6.299	4.249	6.322	3.621	nan	1.632	2.434	3.168	2.171	4.619
15410	chr9	98175031	98176816	+	0	NA	Intergenic	Intergenic	-120660	NM_144533	74080	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	5.066	0.714		0.573	0.076		5.108	3.761	0.882	0.427	1.154	0.596	4.889	4.272	5.076	3.185	0.366	1.759	0.944	0.517	0.472	0.909	0.674	0.217	5.619
6640	chr17	44380093	44384712	+	0	NA	Intergenic	L1_Mus3|LINE|L1	193830	NM_172621	224796	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg	chloride intracellular channel 5	protein-coding	2.676	0.867	0.452	4.810	1.563	1.083	2.030	1.953	3.460	3.680	0.712	0.862	2.131	4.534	4.423	6.602	3.182	5.660	0.457	0.380	0.266	0.473	0.314	0.206	5.312
13384	chr7	87895379	87938506	+	0	NA	intron (NM_001143834, intron 4 of 10)	Lx|LINE|L1	332774	NM_001143834	108071	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	7.081	2.658	1.479	5.873	8.895	5.573	6.917	7.967	nan	7.198	3.638	3.093	9.642	9.015	8.409	nan	nan	nan	2.578	2.051	1.402	nan	2.112	1.597	nan
15871	chrX	163487286	163489331	+	0	NA	Intergenic	L1_Mus1|LINE|L1	61428	NM_008177	14829	Mm.4687	NM_008177	ENSMUSG00000031364	Grpr	GRP-R	gastrin releasing peptide receptor	protein-coding	4.980	3.067	2.209	4.609	3.913	1.778	3.649	6.271	4.019	4.898	2.454	2.057	4.475	5.675	4.644	5.692	4.537	5.459	1.234	1.018	0.387	0.637	0.693	0.572	5.165
8435	chr2	90992284	90993569	+	0	NA	intron (NM_017368, intron 2 of 14)	intron (NM_017368, intron 2 of 14)	-42701	NM_009023	19400	Mm.1272	NM_009023	ENSMUSG00000002104	Rapsn	43kDa|Nraps|Raps|rapsyn	receptor-associated protein of the synapse	protein-coding	2.406	0.848	0.346	2.670	1.284	1.115	3.035	4.182	2.185	2.795	0.350	0.727	4.500	3.407	3.637	5.078	2.969	4.287	0.752	0.606	0.546	0.929	0.964	0.303	2.966
870	chr1	172988455	172990498	+	0	NA	Intergenic	Intergenic	32708	NM_008763	18313	Mm.377103	NM_008763	ENSMUSG00000037924	Olfr16	MOR23|MOR26713	olfactory receptor 16	protein-coding	7.323	1.384	0.831	nan	1.378	1.200	1.686	2.190	3.133	2.430	5.109	2.052	6.244	3.370	3.026	3.260	2.763	3.985	1.593	1.646	1.391	nan	nan	0.577	3.222
11074	chr5	24255845	24258466	+	0	NA	promoter-TSS (NR_030454).4	promoter-TSS (NR_030454).4	-373	NR_030454	735274		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	7.931	10.001	2.550	7.369	1.881	0.933	7.937	7.193	4.075	6.848	6.822	3.029	6.843	8.194	8.321	8.991	4.945	6.557	3.141	1.320	1.561	2.847	2.297	2.002	8.987
6817	chr17	71081995	71092806	+	0	NA	intron (NM_010867, intron 19 of 37)	intron (NM_010867, intron 19 of 37)	67843	NM_001083934	17929	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	3.252	0.763	0.680	2.996	6.101	4.720	4.661	4.376	nan	2.821	3.793	5.380	2.943	4.686	4.245	4.082	2.607	3.530	1.561	1.144	1.361	1.657	1.583	1.396	3.509
10598	chr4	131401196	131409147	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-394697	NR_130167	77835	Mm.348412	NR_130167	ENSMUSG00000086262	A930031H19Rik	A930004I12Rik	RIKEN cDNA A930031H19 gene	ncRNA	0.857	0.579	0.325	1.036	0.502	0.266	0.565	0.427	0.757	0.653	1.556	1.009	0.331	0.609	nan	1.079	0.502	1.185	7.481	3.874	3.329	6.915	5.232	3.973	1.117
6075	chr16	43474341	43476651	+	0	NA	intron (NM_181058, intron 3 of 6)	intron (NM_181058, intron 3 of 6)	-55300	NR_046026	626693	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	OTTMUSG00000025617	predicted gene 15713	ncRNA	1.411	9.032	5.077	2.109	1.521	1.127	0.715	nan	0.673	0.904	0.534	0.636	0.821	1.013	0.989	1.014	0.818	1.971	1.682	1.007	0.866	1.247	1.113	0.970	1.255
13757	chr7	134010367	134013365	+	0	NA	intron (NM_007400, intron 4 of 22)	Lx3_Mus|LINE|L1	213231	NM_007400	11489	Mm.439714	NM_007400	ENSMUSG00000054555	Adam12	Mltna	a disintegrin and metallopeptidase domain 12 (meltrin alpha)	protein-coding	2.905	nan	0.730	2.844	3.694	1.944	2.129	1.264	nan	3.219	0.873	0.505	4.245	6.301	2.082	2.491	3.673	3.671	0.943	1.027	0.450	1.006	1.206	0.478	3.410
5593	chr15	96503632	96508036	+	0	NA	Intergenic	RLTR31D_MM|LTR|ERVK	-44991	NM_028148	72193	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	5.955	1.006	0.363	2.465	1.912	1.281	11.427	10.555	3.158	3.725	1.274	1.316	9.265	6.517	6.516	7.898	9.268	3.843	1.059	0.943	0.843	0.855	1.023	1.053	5.454
8520	chr2	112198974	112202709	+	0	NA	Intergenic	Intergenic	-39000	NM_207206	99010	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	5.560	0.827	0.348	3.003	2.329	0.767	4.708	5.275	4.697	5.168	2.418	1.122	6.256	5.607	5.202	7.545	4.945	7.120	0.594	0.419	0.394	nan	0.490	0.329	6.091
2903	chr11	106359513	106363658	+	0	NA	Intergenic	Intergenic	-12195	NM_133199	110880	Mm.432528	NM_133199	ENSMUSG00000001027	Scn4a	Nav1.4|SkM1|mH2	sodium channel, voltage-gated, type IV, alpha	protein-coding	6.282	6.558	2.624	nan	3.479	2.755	5.158	5.568	nan	5.497	4.997	2.844	5.270	7.537	7.052	7.128	5.461	nan	3.077	2.368	2.337	nan	2.603	2.054	7.338
13737	chr7	133487143	133490468	+	0	NA	Intergenic	(CCA)n|Simple_repeat|Simple_repeat	113310	NM_028654	73808	Mm.159067	NM_028654	ENSMUSG00000030976	Tex36	4930404H21Rik	testis expressed 36	protein-coding	0.841	nan	0.982	1.695	1.514	1.631	3.015	2.611	nan	0.654	1.346	1.596	1.546	1.491	1.448	2.158	2.185	0.745	3.800	1.840	1.477	1.253	6.378	6.173	0.675
10924	chr4	149999298	150001444	+	0	NA	intron (NM_173371, intron 1 of 4)	intron (NM_173371, intron 1 of 4)	2865	NM_001291004	100198	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	1.869	1.945	0.729	1.714	0.887	0.234	2.100	2.438	1.619	3.439	0.846	0.566	3.173	3.594	2.814	2.537	1.595	2.188	1.475	0.440	0.557	2.530	0.399	0.381	3.425
10200	chr4	80594653	80599198	+	0	NA	Intergenic	Lx8b|LINE|L1	-237288	NM_031202	22178	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	2.769	0.535	0.348	1.915	2.133	1.367	3.413	3.880	3.498	2.274	5.070	3.698	3.403	2.775	3.144	3.225	2.072	3.539	nan	1.270	0.745	2.338	2.502	1.951	1.750
4934	chr14	103744893	103746609	+	0	NA	Intergenic	Intergenic	-46319	NR_045148	70898	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	6.274	14.079	4.975	7.221	4.238	2.913	5.590	7.670	4.555	10.159	5.583	3.516	4.945	7.304	6.165	7.799	4.676	5.112	5.338	4.408	3.682	5.257	8.085	7.701	11.677
10194	chr4	71855759	71863251	+	0	NA	Intergenic	L1Md_A|LINE|L1	341388	NM_011599	21885	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	6.903	3.307	0.923	5.905	2.250	1.225	4.223	5.603	4.553	7.165	4.026	1.908	5.753	6.558	6.869	6.063	3.767	7.260	4.634	2.424	1.684	5.216	nan	2.275	nan
2165	chr11	51458588	51465599	+	0	NA	intron (NM_153393, intron 2 of 28)	intron (NM_153393, intron 2 of 28)	-122664	NM_028398	72947	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	4.198	3.641	1.074	6.232	2.143	1.157	3.933	nan	2.623	4.348	3.523	1.702	2.748	3.253	3.961	4.749	2.153	5.166	nan	2.347	2.226	nan	nan	2.325	5.351
9269	chr3	50782492	50783864	+	0	NA	Intergenic	Intergenic	-339565	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	2.962	0.306	0.459	0.756	1.009	0.267	3.293	1.637	1.900	1.920	0.372	0.103	4.855	2.838	3.526	3.300	5.836	2.067	0.707	1.036	0.268	0.629	1.043	0.228	2.991
8951	chr2	163831926	163836019	+	0	NA	TTS (NM_016873)	TTS (NM_016873)	13138	NM_016873	22403	Mm.13828	NM_016873	ENSMUSG00000027656	Wisp2	Ccn5|Crgr4|Ctgfl|Rcop1	WNT1 inducible signaling pathway protein 2	protein-coding	7.526	1.868	1.297	3.477	3.599	2.158	6.213	9.530	3.591	4.030	3.706	2.544	6.886	5.532	4.163	7.288	6.650	nan	nan	1.936	0.945	0.806	1.544	0.696	nan
2347	chr11	68153735	68155396	+	0	NA	intron (NM_018768, intron 7 of 7)	B3A|SINE|B2	-66327	NR_105833	102465219		NR_105833	ENSMUSG00000099174	Mir6406	Gm27981|mmu-mir-6406	microRNA 6406	ncRNA	3.228	0.903	0.545	5.158	2.316	0.761	0.852	0.777	1.561	2.357	1.563	0.707	0.696	nan	1.246	1.462	1.153	2.514	1.388	1.248	1.740	2.183	nan	0.805	2.696
5096	chr15	31457813	31462113	+	0	NA	intron (NM_172606, intron 25 of 25)	intron (NM_172606, intron 25 of 25)	-6274	NM_145852	252967	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	7.663	7.066	2.937	5.715	4.920	4.052	8.283	10.869	4.498	9.144	4.141	2.695	8.480	8.586	7.334	7.517	7.180	7.435	3.682	2.429	2.547	4.212	3.120	3.870	8.433
12922	chr7	13608216	13611139	+	0	NA	Intergenic	L1_Mus3|LINE|L1	-14290	NM_001184980	434264	Mm.359414	NM_001184980	ENSMUSG00000078799	Sult2a5	EG434264|Gm15438|OTTMUSG00000021844	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 5	protein-coding	6.434	11.159	2.412	8.216	2.120	1.642	7.086	8.524	3.883	10.121	6.293	3.251	8.120	8.145	10.614	10.780	5.118	8.948	4.497	2.534	2.694	6.690	2.305	3.430	14.731
15650	chr9	123970765	123972527	+	0	NA	Intergenic	Lx7|LINE|L1	-2954	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	nan	2.371	1.499	2.584	nan	0.450	nan	nan	nan	nan	2.587	1.091	3.047	4.935	2.902	nan	1.869	2.429	0.917	0.559	0.333	0.385	0.199	0.112	nan
14721	chr8	124859435	124860905	+	0	NA	intron (NM_025615, intron 2 of 6)	intron (NM_025615, intron 2 of 6)	2859	NM_025615	66523	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	2.985	nan	0.175	4.472	0.343	1.154	2.466	3.723	2.163	6.947	1.036	0.878	3.939	4.184	6.715	9.055	4.006	5.844	nan	0.381	1.815	3.674	0.677	nan	8.988
13579	chr7	117344414	117348545	+	0	NA	Intergenic	Intergenic	-34500	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	1.114	9.185	6.941	1.089	0.659	0.529	0.489	0.529	0.958	0.993	1.134	0.846	0.281	nan	0.821	0.882	1.069	1.169	0.745	0.921	0.907	0.564	0.663	0.825	0.669
777	chr1	158544356	158549778	+	0	NA	intron (NM_007495, intron 8 of 22)	intron (NM_007495, intron 8 of 22)	41442	NR_030441	735253		NR_030441	ENSMUSG00000070103	Mir488	Mirn488|mir-488|mmu-mir-488	microRNA 488	ncRNA	9.535	7.396	4.656	3.522	5.376	2.927	5.788	4.923	4.402	4.550	7.004	3.559	6.803	6.503	4.681	8.255	5.236	5.851	nan	1.290	0.848	0.711	nan	0.700	4.335
8252	chr2	58005641	58014660	+	0	NA	intron (NM_172855, intron 1 of 9)	MLT1-int|LTR|ERVL-MaLR	11995	NM_172855	241391	Mm.484118	NM_172855	ENSMUSG00000026828	Galnt5	4832424J23	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5	protein-coding	4.517	11.649	5.462	4.513	2.890	1.547	2.213	nan	3.542	3.702	2.811	1.024	3.663	3.701	3.250	3.960	3.858	4.171	0.950	1.818	1.006	0.660	0.647	0.319	2.213
6129	chr16	55504464	55505957	+	0	NA	Intergenic	Intergenic	10479	NR_039578	100628589		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	5.742	1.438	1.793	1.907	3.772	2.960	4.212	3.978	2.333	2.279	4.711	7.450	2.751	4.152	3.459	3.326	2.997	3.235	nan	0.968	1.047	0.906	1.148	0.927	2.226
5747	chr16	4472298	4475086	+	0	NA	Intergenic	Intergenic	49361	NM_175347	106393	Mm.35811	NM_175347	ENSMUSG00000022519	Srl	9830004M20Rik|AW108387|sar	sarcalumenin	protein-coding	8.233	5.609	1.933	5.928	5.064	4.637	nan	7.223	4.810	5.009	3.276	2.735	9.078	9.010	7.791	10.615	6.526	8.678	3.754	1.454	2.323	3.095	2.963	3.737	10.890
8641	chr2	127469395	127470897	+	0	NA	intron (NM_019789, intron 2 of 8)	B2_Mm2|SINE|B2	12353	NM_001111331	56461	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding	2.121	0.407	0.419	2.217	1.890	0.605	4.432	3.373	3.261	3.404	1.261	1.615	3.109	3.509	4.365	7.297	4.604	4.537	nan	0.607	0.312	0.793	0.432	0.578	8.240
3968	chr13	36619748	36623291	+	0	NA	Intergenic	(TATG)n|Simple_repeat|Simple_repeat	112958	NM_153529	68404	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	2.785	nan	0.989	1.420	1.435	0.352	nan	2.800	nan	nan	1.590	1.408	3.617	2.766	2.729	4.188	3.010	3.167	0.861	0.596	0.334	0.535	0.543	0.396	3.425
15771	chrX	93324022	93331599	+	0	NA	intron (NM_008892, intron 36 of 36)	intron (NM_008892, intron 36 of 36)	41303	NM_001305940	11878	Mm.275547	NM_007492	ENSMUSG00000035277	Arx	-	aristaless related homeobox	protein-coding	4.929	3.353	1.264	4.081	2.844	1.159	2.610	3.195	3.400	3.482	3.734	1.788	3.392	4.384	3.245	4.301	2.547	4.061	0.754	0.897	0.430	0.710	0.360	0.200	3.395
1685	chr10	98836659	98838038	+	0	NA	Intergenic	Intergenic	-77804	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	4.087	0.675	0.512	1.475	1.904	1.283	1.590	2.903	2.137	2.295	1.405	0.626	2.284	3.288	2.391	3.242	2.362	3.555	nan	0.944	1.102	1.983	0.882	0.848	2.733
1891	chr11	3434979	3439823	+	0	NA	intron (NM_001290472, intron 1 of 6)	MTC|LTR|ERVL-MaLR	-15036	NR_028317	71523	Mm.72795	NM_027820	ENSMUSG00000034587	8430429K09Rik	-	RIKEN cDNA 8430429K09 gene	ncRNA	3.518	3.472	0.844	5.971	1.357	0.409	2.646	3.980	2.912	4.229	4.506	2.536	2.508	3.037	4.519	5.202	2.248	5.080	2.071	nan	0.686	1.742	0.916	0.503	6.984
183	chr1	54032552	54035369	+	0	NA	intron (NM_001001883, intron 2 of 28)	Lx5|LINE|L1	161074	NM_001001883	329152	Mm.132150	NM_172655	ENSMUSG00000042807	Hecw2	A730039N16Rik|D030049F17Rik|Gm971|Nedl2|mKIAA1301	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	protein-coding	3.237	0.738	0.413	5.416	1.635	0.614	0.958	1.089	2.334	1.961	1.135	0.444	1.002	2.561	1.795	2.796	1.348	3.132	0.697	1.173	1.016	1.748	0.638	0.536	2.016
5203	chr15	58253275	58255491	+	0	NA	Intergenic	Intergenic	-39491	NM_026346	67731	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	3.821	5.543	2.641	nan	0.571	0.667	3.204	2.999	3.221	2.668	0.528	0.981	7.278	5.463	4.712	4.620	5.708	4.624	0.871	0.307	0.166	0.683	0.238	0.042	3.889
9069	chr2	172871439	172877077	+	0	NA	intron (NM_007557, intron 5 of 6)	RLTR20D|LTR|ERVK	66063	NM_007557	12162	Mm.595	NM_007557	ENSMUSG00000008999	Bmp7	OP1	bone morphogenetic protein 7	protein-coding	0.714	11.202	4.516	1.050	0.381	0.152	0.521	0.671	0.653	0.469	0.680	0.504	0.423	nan	0.713	0.828	0.460	nan	nan	0.565	0.686	0.793	0.400	0.358	nan
13017	chr7	26079668	26081942	+	0	NA	intron (NM_007813, intron 2 of 8)	intron (NM_007813, intron 2 of 8)	19310	NM_007813	13089	Mm.482696	NM_007813	ENSMUSG00000040583	Cyp2b13	-	cytochrome P450, family 2, subfamily b, polypeptide 13	protein-coding	1.331	8.663	6.101	1.547	1.491	0.737	1.661	3.144	1.684	1.669	0.893	0.936	1.384	1.590	2.173	2.546	1.568	2.428	1.277	1.285	1.266	1.516	1.337	1.175	2.013
2544	chr11	82891823	82896363	+	0	NA	intron (NM_030224, intron 1 of 3)	B1_Mus1|SINE|Alu	1948	NM_030224	78919	Mm.286733	NM_030224	ENSMUSG00000018844	Fndc8	4930466G16Rik	fibronectin type III domain containing 8	protein-coding	5.108	7.798	2.318	5.712	1.716	1.266	2.366	2.629	3.076	2.516	5.574	2.186	1.791	2.319	nan	2.993	1.994	4.297	1.061	1.206	nan	0.937	0.477	0.232	3.262
362	chr1	82828179	82829573	+	0	NA	Intergenic	Intergenic	-10584	NM_001310713	15463	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	5.103	12.855	2.856	2.640	2.559	0.948	4.342	6.019	3.029	2.826	2.350	3.434	4.603	3.940	5.178	6.745	2.619	4.274	nan	nan	0.257	1.327	nan	0.308	3.591
7002	chr18	5839120	5843684	+	0	NA	Intergenic	Intergenic	-248965	NR_033552	791318	Mm.84339	NR_033552	ENSMUSG00000063087	Gm10125	ENSMUSG00000063087|Zeb1os	predicted gene 10125	ncRNA	7.244	0.709	0.589	2.423	3.834	2.571	4.397	4.510	2.937	3.234	1.062	1.014	nan	7.340	3.651	2.719	3.826	2.768	0.617	0.657	0.667	0.456	0.852	0.985	4.661
1379	chr10	67516214	67518721	+	0	NA	Intergenic	Intergenic	-20402	NM_010118	13654	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	2.587	0.777	0.889	1.670	2.604	2.470	3.111	1.153	2.471	2.813	0.497	1.043	4.597	5.188	1.973	2.357	2.982	nan	0.488	1.041	0.653	0.518	0.553	0.379	1.748
13140	chr7	38802752	38804871	+	0	NA	Intergenic	L1Md_T|LINE|L1	-33507	NR_073038	100861861	Mm.60620	NR_073038		Gm21276	-	predicted gene, 21276	pseudo	6.086	8.880	3.622	7.203	3.050	2.005	6.355	7.885	4.553	11.022	3.437	2.811	7.993	7.378	7.349	8.200	6.818	7.332	4.383	1.953	2.533	4.061	2.618	3.904	10.654
12901	chr7	4403927	4407059	+	0	NA	Intergenic	MT2C_Mm|LTR|ERVL	-7749	NM_001163014	243816	Mm.248662	NM_001163014	ENSMUSG00000078810	Gp6	9830166G18Rik|Gm469|Gpvi	glycoprotein 6 (platelet)	protein-coding	9.635	2.756	2.055	5.974	8.607	7.680	9.955	11.276	5.477	6.460	4.282	5.657	11.054	12.761	7.093	7.183	12.092	8.477	1.876	2.013	1.351	0.611	3.404	3.360	7.144
13805	chr7	137361966	137366531	+	0	NA	Intergenic	Intergenic	46508	NM_029886	77252	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	2.485	nan	0.464	3.663	3.051	1.304	1.826	7.506	2.264	2.453	0.537	0.646	2.075	3.843	3.517	3.010	2.047	4.130	0.751	0.706	0.698	0.842	0.700	0.531	2.488
8501	chr2	103226954	103231056	+	0	NA	Intergenic	Intergenic	74191	NM_007914	13661	Mm.10724	NM_007914	ENSMUSG00000012350	Ehf	9030625L19Rik|AU019492	ets homologous factor	protein-coding	3.306	0.648	0.254	1.691	1.317	0.329	2.610	3.570	2.519	3.174	1.164	0.344	4.434	7.424	5.545	5.075	3.810	2.857	0.766	0.581	0.209	nan	0.506	0.238	5.743
6397	chr17	24685301	24688633	+	0	NA	intron (NM_011522, intron 2 of 3)	(TTTC)n|Simple_repeat|Simple_repeat	2982	NM_011522	20974	Mm.26032	NM_011522	ENSMUSG00000007021	Syngr3	-	synaptogyrin 3	protein-coding	6.721	8.430	3.271	7.011	4.368	4.275	8.383	4.223	3.578	6.636	2.937	2.164	6.258	9.831	5.039	nan	3.854	4.805	7.265	4.642	5.908	6.107	6.779	7.735	8.320
11093	chr5	28824893	28828967	+	0	NA	Intergenic	Intergenic	-359829	NM_009170	20423	Mm.57202	NM_009170	ENSMUSG00000002633	Shh	9530036O11Rik|Dsh|Hhg1|Hx|Hxl3|M100081	sonic hedgehog	protein-coding	3.813	0.564	0.218	nan	1.441	0.673	4.585	4.914	4.228	4.033	2.977	1.725	4.430	6.247	6.808	5.352	3.854	5.505	1.160	0.921	0.572	1.483	2.710	1.989	5.822
4598	chr14	34915518	34918860	+	0	NA	intron (NM_008166, intron 2 of 15)	intron (NM_008166, intron 2 of 15)	22580	NR_029774	723847		NR_029774	ENSMUSG00000065481	Mir346	Mirn346|mir-346|mmu-mir-346	microRNA 346	ncRNA	2.485	0.907	0.314	1.299	0.449	0.259	1.095	4.581	2.291	2.666	7.218	1.857	1.612	2.324	1.635	1.941	1.155	1.872	1.058	0.536	0.220	1.030	0.900	0.344	3.569
6420	chr17	26275084	26277444	+	0	NA	intron (NR_037906, intron 6 of 8)	RLTR44E|LTR|ERVK	23354	NR_037905	66978	Mm.440216	NM_025881	ENSMUSG00000024188	Luc7l	1810045C04Rik|2410018D03Rik	Luc7-like	protein-coding	5.156	8.142	3.340	5.437	5.162	3.417	6.698	5.393	2.706	9.250	5.255	2.510	3.668	6.672	5.471	7.064	5.325	4.398	3.738	3.977	3.544	4.282	4.657	4.422	8.853
13730	chr7	132718581	132725364	+	0	NA	intron (NM_001347630, intron 3 of 3)	B4|SINE|B4	54944	NM_001347630	77938	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	4.839	4.976	1.618	6.389	3.934	2.271	5.567	4.967	5.732	6.503	4.789	2.956	7.307	7.088	6.247	6.122	3.582	6.315	2.302	1.533	1.411	2.867	2.005	1.237	6.750
3798	chr12	118790801	118800432	+	0	NA	Intergenic	IAPEz-int|LTR|ERVK	-50713	NM_177082	320145	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	6.329	1.768	1.186	3.174	2.249	1.021	5.028	4.876	6.302	6.632	1.401	1.549	8.944	5.113	5.630	7.182	7.839	5.386	0.673	0.769	0.355	0.607	0.425	0.328	5.445
12519	chr6	97776256	97777614	+	0	NA	Intergenic	Intergenic	-30123	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	5.018	1.141	0.452	2.335	2.484	1.098	2.306	2.251	2.334	2.760	1.629	0.572	1.502	3.881	5.047	7.141	2.093	4.389	nan	nan	0.406	1.220	0.536	0.029	2.776
407	chr1	89633400	89634676	+	0	NA	intron (NM_001037136, intron 5 of 16)	intron (NM_001037136, intron 5 of 16)	49854	NR_015540	74403	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	1.127	0.667	0.035	0.303	0.401		0.580	0.934	0.787	0.649	0.247	0.497	1.559	3.827	1.132	1.417	0.672	1.195	0.590	0.068	0.010	nan	0.169	0.371	1.021
2496	chr11	77576450	77582287	+	0	NA	intron (NM_144825, intron 3 of 19)	intron (NM_144825, intron 3 of 19)	28447	NM_144825	216965	Mm.340436	NM_144825	ENSMUSG00000017291	Taok1	2810468K05Rik|AU020252|D130018F14Rik|Map3k16|Markk|Psk2|mKIAA1361	TAO kinase 1	protein-coding	7.876	2.116	0.468	8.361	5.000	3.333	10.126	8.967	5.135	9.461	4.528	3.385	9.344	9.853	nan	10.144	6.364	8.476	4.298	2.369	nan	4.495	2.823	2.891	11.938
3686	chr12	105302963	105304575	+	0	NA	Intergenic	IAPEz-int|LTR|ERVK	-32825	NR_045047	69952	Mm.158311	NR_045047	ENSMUSG00000097929	Tunar	2810011L19Rik|Tuna	Tcl1 upstream neural differentiation associated RNA	ncRNA	5.903	3.474	1.285	nan	1.135	0.306	3.126	4.059	nan	nan	3.817	0.803	2.578	4.330	2.806	1.721	1.708	1.022	0.772	0.693	0.152	1.310	0.109	0.178	3.414
5351	chr15	76022724	76039181	+	0	NA	Intergenic	Lx8|LINE|L1	-16616	NM_134087	105732	Mm.267178	NM_134087	ENSMUSG00000046761	Fam83h	AA409316	family with sequence similarity 83, member H	protein-coding	9.264	4.983	1.097	9.099	4.097	2.013	9.209	14.148	4.343	7.148	nan	3.704	8.997	10.181	8.677	9.401	nan	7.915	2.847	1.910	1.647	nan	2.098	1.529	11.915
14258	chr8	64191505	64193754	+	0	NA	intron (NM_009390, intron 1 of 20)	(TA)n|Simple_repeat|Simple_repeat	13364	NM_009390	21892	Mm.418367	NM_009390	ENSMUSG00000053626	Tll1	Tll|Tll-1	tolloid-like	protein-coding	2.781	0.474	0.375	0.837	1.299	0.414	8.276	8.791	2.765	2.200	2.943	3.305	4.760	5.199	6.062	4.588	1.790	3.983	nan	1.446	0.570	1.310	1.483	0.855	1.589
12355	chr6	83273959	83275873	+	0	NA	intron (NM_001166067, intron 13 of 24)	B1_Mus2|SINE|Alu	37541	NM_001166067	232156	Mm.333189	NM_001166067	ENSMUSG00000068323	Slc4a5	C330006M16|C330016K18Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 5	protein-coding	4.218	5.322	5.745	3.106	3.275	2.953	3.609	3.773	2.840	2.713	1.524	1.467	2.970	4.291	3.310	4.263	4.763	nan	nan	3.160	3.106	2.449	2.768	3.312	2.599
10629	chr4	132438942	132441137	+	0	NA	Intergenic	Intergenic	-17593	NM_175306	100169	Mm.158361	NM_175306	ENSMUSG00000066043	Phactr4	3110001B12Rik|AI527228|AW495572|C330013F19Rik|N28169|mKIAA4120	phosphatase and actin regulator 4	protein-coding	9.957	8.734	3.126	10.650	5.915	4.227	6.391	7.909	6.051	10.288	6.590	3.330	6.032	9.269	7.939	10.875	4.186	8.015	7.095	2.753	4.130	8.856	4.349	5.087	14.232
4511	chr14	21525956	21527726	+	0	NA	intron (NM_017479, intron 2 of 16)	ID_B1|SINE|B4	27056	NM_017479	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	8.965	9.557	2.506	10.658	4.878	4.429	5.766	9.448	4.750	10.910	6.902	3.169	6.520	9.469	9.532	9.924	5.078	7.630	6.808	2.619	3.790	7.256	4.954	6.513	14.723
12298	chr6	70734511	70742926	+	0	NA	Intergenic	(TTTC)n|Simple_repeat|Simple_repeat	53457	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	5.224	3.366	1.432	3.951	3.477	2.202	6.015	8.729	3.297	3.874	2.997	2.358	5.589	6.844	6.542	8.290	6.931	4.480	2.697	1.597	1.153	1.957	2.317	1.670	5.382
7844	chr19	47056540	47064822	+	0	NA	Intergenic	B1_Mur2|SINE|Alu	-7067	NM_177342	226182	Mm.301522	NM_177342	ENSMUSG00000025049	Taf5	6330528C20Rik|AV117817	TATA-box binding protein associated factor 5	protein-coding	3.991	1.230	0.608	nan	5.256	2.990	9.997	14.046	3.909	4.246	8.343	4.651	7.101	10.070	8.178	10.324	9.129	nan	1.164	1.231	1.052	1.563	0.890	0.941	8.764
11676	chr5	122785924	122788012	+	0	NA	TTS (NM_021505)	TTS (NM_021505)	-7558	NM_145358	207565	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	3.509	0.970	0.786	2.398	5.528	3.692	3.503	2.731	3.263	3.242	2.124	1.139	4.252	6.437	2.872	3.433	4.469	2.795	nan	1.838	2.063	1.636	nan	1.175	2.264
10884	chr4	148171274	148173182	+	0	NA	Intergenic	Intergenic	11560	NM_176848	230904	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	6.870	nan	0.407	5.601	5.149	3.621	8.814	9.520	5.065	7.632	9.535	4.201	9.667	9.747	9.399	10.151	6.301	8.320	10.390	6.932	4.055	11.574	13.229	11.765	13.056
1167	chr10	21563750	21568797	+	0	NA	Intergenic	CT-rich|Low_complexity|Low_complexity	-26872	NR_027968	67692	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	2.437	0.921	0.925	1.728	0.788	0.330	1.571	1.023	nan	1.369	6.975	4.711	1.521	nan	1.549	1.269	1.359	1.386	1.011	0.972	0.497	0.863	0.392	0.171	nan
1393	chr10	68597962	68599959	+	0	NA	Intergenic	L1_Mus1|LINE|L1	-57085	NM_028491	73287	Mm.141830	NM_028491	ENSMUSG00000019945	1700040L02Rik	-	RIKEN cDNA 1700040L02 gene	protein-coding	5.762	0.528	0.522	2.439	2.775	1.137	3.710	3.834	4.599	5.682	0.544	1.100	4.390	5.336	3.628	4.738	6.863	3.831	1.674	1.539	1.173	1.135	1.783	1.224	3.578
10382	chr4	109956662	109963069	+	0	NA	intron (NM_007983, intron 18 of 18)	PB1D9|SINE|Alu	-18160	NM_172296	242620	Mm.32825	NM_172296	ENSMUSG00000047143	Dmrta2	Dmrt5	doublesex and mab-3 related transcription factor like family A2	protein-coding	0.407	0.555	0.528	0.270	0.193	0.135	0.303	nan	0.378	0.287	0.312	0.236	0.257	0.231	0.257	0.400	0.375	nan	8.629	9.537	5.411	8.263	9.493	6.498	0.421
6252	chr16	95441476	95447278	+	0	NA	intron (NM_001302152, intron 3 of 10)	intron (NM_001302152, intron 3 of 10)	14971	NM_001302154	13876	Mm.164531	NM_133659	ENSMUSG00000040732	Erg	D030036I24Rik	avian erythroblastosis virus E-26 (v-ets) oncogene related	protein-coding	8.211	0.966	0.411	5.103	5.613	2.739	5.924	5.421	6.428	9.248	2.639	0.964	9.941	11.949	nan	9.089	6.703	8.350	nan	0.835	0.552	1.093	1.080	0.687	7.218
14901	chr9	21396463	21398971	+	0	NA	intron (NM_001042708, intron 13 of 18)	intron (NM_001042708, intron 13 of 18)	14003	NR_045742	330902	Mm.437044	NR_045742	ENSMUSG00000097665	Gm16853	4930565O14	predicted gene, 16853	ncRNA	5.925	7.562	1.593	6.597	2.338	1.348	4.443	6.332	3.166	6.388	4.111	1.669	4.287	6.969	6.924	7.811	3.257	5.933	3.527	2.144	1.319	4.438	2.645	2.090	12.267
13752	chr7	133902568	133906863	+	0	NA	intron (NM_007400, intron 21 of 22)	intron (NM_007400, intron 21 of 22)	-121930	NM_001286031	101437	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	8.855	nan	1.816	8.535	4.051	1.815	7.726	11.146	5.119	7.059	5.239	4.520	7.107	8.942	7.890	8.307	5.433	8.001	5.121	4.106	3.639	6.507	4.411	3.758	10.676
5490	chr15	82726825	82727693	+	0	NA	Intergenic	L1Md_T|LINE|L1	36863	NM_023623	71754	Mm.443024	NM_023623	ENSMUSG00000068083	Cyp2d40	1300013D18Rik|CYPIID3|P450-DB3	cytochrome P450, family 2, subfamily d, polypeptide 40	protein-coding	4.513	3.021	2.220	2.505	3.352	1.936	2.057	2.905	2.861	2.001	nan	1.114	5.116	4.518	2.429	1.788	2.472	4.229	1.096	1.141	1.229	nan	1.467	1.016	0.693
6705	chr17	47890083	47895379	+	0	NA	intron (NM_001110824, intron 2 of 16)	B1_Mur2|SINE|Alu	31901	NM_028767	74123	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	6.250	8.352	4.095	3.453	2.972	2.333	5.375	3.637	2.124	1.985	2.873	1.080	3.320	4.448	2.947	3.931	nan	2.576	0.855	1.418	1.859	0.759	0.491	0.598	5.118
15271	chr9	70813192	70818107	+	0	NA	intron (NM_001324473, intron 5 of 8)	intron (NM_001324473, intron 5 of 8)	119159	NM_008280	15450	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.504	2.505	1.120	0.593	0.244	0.133	0.340	0.457	0.493	0.475	0.408	0.394	0.358	0.523	nan	0.742	0.538	0.790	nan	1.583	1.163	4.229	2.073	1.508	0.686
10180	chr4	64784472	64788042	+	0	NA	Intergenic	Intergenic	-337917	NM_021362	18491	Mm.317854	NM_021362	ENSMUSG00000028370	Pappa	8430414N03Rik|IGFBP-4ase|PAG1|PAPP-A	pregnancy-associated plasma protein A	protein-coding	1.619	0.660	0.443	1.508	1.613	0.888	0.432	0.838	0.638	1.194	1.332	0.646	0.336	1.401	0.643	nan	0.565	0.914	4.070	3.338	2.567	5.293	8.822	8.648	nan
9409	chr3	85616133	85619357	+	0	NA	intron (NM_144896, intron 8 of 12)	intron (NM_144896, intron 8 of 12)	43616	NM_144896	229487	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	5.565	0.434	0.594	2.673	4.038	1.701	7.453	3.595	3.214	3.154	2.312	1.879	7.021	7.473	4.639	4.863	4.497	6.117	nan	1.948	0.874	2.140	2.142	1.966	4.483
15606	chr9	121206108	121211110	+	0	NA	intron (NM_177589, intron 17 of 36)	RSINE1|SINE|B4	68563	NM_177589	209012	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	3.769	13.308	4.171	6.137	1.969	1.186	2.435	3.150	2.439	5.186	2.346	1.807	2.507	2.997	4.321	5.029	1.859	4.569	4.452	2.184	2.508	6.035	nan	2.273	7.528
14935	chr9	31059788	31061665	+	0	NA	intron (NM_172765, intron 2 of 5)	intron (NM_172765, intron 2 of 5)	30082	NM_172765	235132	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	5.036	1.577	1.116	5.807	2.695	2.573	2.856	6.756	4.599	3.468	3.571	4.019	1.839	2.817	2.844	3.708	3.768	3.794	2.888	3.981	3.311	4.434	4.841	3.939	3.787
5248	chr15	61910155	61912048	+	0	NA	Intergenic	Intergenic	-74240	NM_001177354	17869	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	5.540	2.957	1.596	3.676	4.336	2.504	5.088	9.480	3.728	3.403	4.190	2.856	4.378	6.104	4.840	4.194	4.566	4.634	1.205	1.256	0.956	1.016	0.728	0.572	4.631
14501	chr8	97663478	97670880	+	0	NA	Intergenic	Intergenic	-1121206	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	11.292	1.303	0.492	6.816	3.128	1.961	9.021	8.692	4.769	5.838	3.241	1.583	9.067	7.699	9.034	12.131	8.626	8.337	1.045	1.208	1.346	2.132	1.168	0.843	13.777
10998	chr4	155264937	155269121	+	0	NA	intron (NM_001039079, intron 13 of 14)	RSINE1|SINE|B4	17063	NR_033802	67513	Mm.10374	NM_001190445	ENSMUSG00000073684	Faap20	2610002J02Rik	Fanconi anemia core complex associated protein 20	protein-coding	5.475	8.088	2.433	8.042	2.061	1.451	3.541	5.645	3.414	7.559	4.272	1.962	3.265	5.683	5.415	7.244	2.871	6.241	5.120	1.508	1.813	5.321	2.530	3.054	11.134
10679	chr4	134258478	134260721	+	0	NA	Intergenic	ID_B1|SINE|B4	-5493	NM_001099296	72690	Mm.100168	NM_001099296	ENSMUSG00000050105	Grrp1	2810043G13Rik|Fam110d	glycine/arginine rich protein 1	protein-coding	5.250	4.261	1.287	8.566	2.767	1.914	5.825	3.627	nan	11.057	2.231	2.096	3.034	5.700	5.080	5.113	1.774	nan	6.786	1.794	3.990	7.777	nan	6.622	11.615
14383	chr8	83865693	83869823	+	0	NA	Intergenic	Intergenic	-32340	NM_181039	330814	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	1.339	8.888	3.907	1.933	0.731	0.534	1.079	1.647	nan	1.074	0.323	0.457	0.935	0.705	1.986	2.092	1.514	1.059	nan	1.747	1.345	2.193	1.083	0.716	1.977
14014	chr8	11799871	11801985	+	0	NA	intron (NM_001113517, intron 8 of 18)	intron (NM_001113517, intron 8 of 18)	-39593	NM_029326	75528	Mm.440342	NM_029326	ENSMUSG00000031512	Tex29	1700018L24Rik	testis expressed 29	protein-coding	4.908	0.742	0.813	3.243	2.769	1.854	4.327	2.052	3.902	4.653	0.822	0.624	4.236	5.060	4.388	5.891	5.444	4.217	1.460	1.137	0.870	2.454	1.002	0.841	6.038
9353	chr3	62237467	62240588	+	0	NA	Intergenic	Intergenic	-99750	NM_001081295	622434	Mm.153974	NM_001081295	ENSMUSG00000036885	Arhgef26	4631416L12Rik|8430436L14Rik|AI303572|AW491953|SGEF	Rho guanine nucleotide exchange factor (GEF) 26	protein-coding	4.883	0.484	0.276	2.815	3.838	3.009	7.946	2.142	3.291	3.202	1.518	0.791	6.078	5.659	2.920	nan	3.666	5.614	0.922	1.377	0.997	1.201	1.222	0.822	3.414
9830	chr3	137530003	137531990	+	0	NA	Intergenic	Intergenic	21626	NM_177665	229862	Mm.246591	NM_177665	ENSMUSG00000055138	Gm4861	9230109N16|EG229862	predicted gene 4861	protein-coding	7.034	9.169	2.100	12.253	3.888	2.243	7.197	5.885	5.391	15.241	5.417	2.593	7.140	8.795	9.845	9.584	4.971	11.143	5.856	1.913	2.188	6.768	2.356	3.756	13.290
5567	chr15	91471120	91476106	+	0	NA	intron (NM_001033633, intron 3 of 9)	ORR1B1|LTR|ERVL-MaLR	99648	NM_001033633	239606	Mm.360596	NM_001033633	ENSMUSG00000036298	Slc2a13	6530403A04|A630029G22Rik|AI505012|Gm308	solute carrier family 2 (facilitated glucose transporter), member 13	protein-coding	9.029	1.885	1.106	3.921	3.714	2.023	8.243	8.234	6.709	8.848	2.706	1.152	9.518	7.230	nan	nan	9.105	nan	nan	1.473	1.252	nan	1.371	0.811	nan
12793	chr6	135200007	135203301	+	0	NA	intron (NM_028982, intron 1 of 12)	intron (NM_028982, intron 1 of 12)	3667	NM_028982	74525	Mm.34182	NM_028982	ENSMUSG00000030207	Fam234b	8430419L09Rik|Kiaa1467|mKIAA1467	family with sequence similarity 234, member B	protein-coding	5.429	0.974	0.413	6.012	3.696	1.806	8.002	7.049	4.715	5.060	3.898	2.532	8.513	10.867	8.916	10.583	5.726	6.623	nan	0.813	0.583	2.252	1.221	0.783	6.183
10159	chr4	62321200	62331293	+	0	NA	intron (NM_001045528, intron 14 of 27)	intron (NM_001045528, intron 14 of 27)	34302	NM_001045528	338355	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	6.736	5.030	2.002	3.372	3.140	1.867	4.671	4.404	3.713	3.850	4.636	2.312	5.611	6.057	4.722	5.415	4.214	4.683	nan	1.793	1.521	3.102	1.516	1.028	7.306
13642	chr7	120199328	120201163	+	0	NA	intron (NM_016669, intron 2 of 7)	intron (NM_016669, intron 2 of 7)	1743	NM_016669	12971	Mm.9114	NM_016669	ENSMUSG00000030905	Crym	-	crystallin, mu	protein-coding	3.718	0.624	0.177	1.532	1.363	0.836	7.279	5.839	2.652	3.174	4.305	0.678	8.329	5.987	6.043	6.031	4.837	3.602	0.850	0.632	0.453	0.790	0.724	0.506	2.459
12241	chr6	52533807	52536275	+	0	NA	Intergenic	Intergenic	42590	NR_046049	74304	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	3.013	1.643	1.297	2.402	2.414	1.471	3.860	4.330	3.495	3.264	0.845	1.134	4.470	4.433	3.437	4.466	4.579	4.241	nan	0.937	1.125	1.435	0.744	0.679	2.707
2489	chr11	77193796	77201187	+	0	NA	Intergenic	Lx8|LINE|L1	-8523	NM_176965	319634	Mm.108786	NM_176965	ENSMUSG00000050944	Efcab5	4930563A03Rik	EF-hand calcium binding domain 5	protein-coding	5.669	4.296	1.622	5.359	3.324	2.529	3.204	3.464	5.164	4.670	3.053	2.584	4.181	nan	3.579	5.143	4.353	6.213	2.113	1.330	nan	2.040	1.288	1.318	2.816
4948	chr14	109514598	109515675	+	0	NA	Intergenic	Intergenic	54906	NR_039542	100628607		NR_039542	ENSMUSG00000092639	Mir3964	mmu-mir-3964|mu-mir-3964	microRNA 3964	ncRNA	2.123	0.394	0.343	1.480	0.841	0.804	2.581	3.029	0.980	0.824	1.576	0.306	1.492	3.150	1.842	1.159	2.371	1.512	1.448	1.504	0.629	1.151	0.411	0.262	0.724
6805	chr17	67056723	67061641	+	0	NA	intron (NM_008984, intron 5 of 30)	(GGA)n|Simple_repeat|Simple_repeat	-32947	NR_049205	100885844		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	4.778	0.838	0.266	1.678	1.435	0.819	7.965	5.664	nan	2.612	0.989	0.633	5.511	nan	9.044	10.713	5.623	5.071	0.993	0.543	0.446	0.851	0.686	0.643	6.287
13918	chr7	150480509	150483085	+	0	NA	Intergenic	Intergenic	5166962	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	6.021	7.787	2.445	nan	3.270	1.198	4.668	10.522	nan	5.204	1.392	2.271	6.610	7.783	5.765	6.515	4.603	5.456	3.988	3.319	1.715	3.979	nan	2.198	7.658
2509	chr11	78074600	78076499	+	0	NA	exon (NM_022313, exon 7 of 10)	exon (NM_022313, exon 7 of 10)	-2308	NR_105850	102466649		NR_105850	ENSMUSG00000104813	Mir451b	mmu-mir-451b	microRNA 451b	ncRNA	nan	6.283	3.264	6.469	5.673	4.935	nan	6.409	4.841	6.919	7.064	5.528	4.911	nan	nan	5.669	5.748	nan	3.237	3.444	nan	4.174	4.741	6.115	6.817
2955	chr11	112961090	112965201	+	0	NA	Intergenic	Intergenic	-138017	NR_130164	76393	Mm.86795	NR_130164		1700012H19Rik	-	RIKEN cDNA 1700012H19 gene	ncRNA	5.317	2.639	1.055	nan	3.246	2.060	8.589	6.921	nan	6.489	3.664	2.336	6.077	6.760	7.166	7.089	5.799	5.716	2.590	2.412	1.343	nan	2.080	1.729	6.654
4919	chr14	101936974	101939378	+	0	NA	Intergenic	L1MA5|LINE|L1	97553	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.865	nan	0.759	0.672	0.492	0.483	0.484	0.982	0.763	0.677	0.425	0.201	0.207	0.674	0.557	0.811	0.775	0.545	1.999	3.616	1.645	2.768	2.356	1.539	nan
964	chr1	183186058	183188919	+	0	NA	intron (NM_001278218, intron 1 of 8)	intron (NM_001278218, intron 1 of 8)	34041	NM_001278218	68897	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched RND transporter family member 1	protein-coding	9.780	10.799	3.140	6.854	3.375	1.068	9.708	10.968	4.842	6.788	8.167	4.501	11.034	12.050	7.477	11.965	7.727	7.656	2.401	1.689	1.479	3.359	2.033	1.469	7.008
4210	chr13	63056485	63072132	+	0	NA	intron (NM_001289926, intron 4 of 15)	intron (NM_001289926, intron 4 of 15)	99415	NM_001289924	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.856	1.026	0.468	0.982	0.627	0.471	0.596	0.613	0.739	0.751	0.623	0.510	0.464	0.577	0.767	nan	0.596	1.157	7.489	4.477	3.045	9.418	4.004	2.759	0.945
6061	chr16	38035992	38037422	+	0	NA	intron (NR_040565, intron 3 of 3)	intron (NR_040565, intron 3 of 3)	19384	NR_040565	75175	Mm.399335	NR_040565		4930542C21Rik	-	RIKEN cDNA 4930542C21 gene	ncRNA	3.088	1.015	0.872	1.580	2.564	2.938	5.170	3.152	3.432	2.476	1.565	1.974	4.278	3.629	3.000	4.188	3.408	3.921	1.159	0.840	1.074	0.677	1.094	0.831	nan
6661	chr17	45944185	45945867	+	0	NA	Intergenic	Intergenic	80137	NM_001110267	22339	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	1.325	0.387	0.247	0.812	0.635	0.595	4.166	5.371	1.127	1.635	2.667	1.363	2.174	4.680	2.743	2.702	nan	2.107	0.612	1.088	0.416	0.758	0.540	0.411	3.196
6948	chr17	87680648	87689417	+	0	NA	intron (NM_008628, intron 4 of 15)	intron (NM_008628, intron 4 of 15)	12475	NM_008628	17685	Mm.4619	NM_008628	ENSMUSG00000024151	Msh2	AI788990	mutS homolog 2	protein-coding	6.063	5.781	1.920	7.107	3.940	2.188	7.892	6.095	5.192	9.224	4.864	2.207	8.013	11.020	9.871	11.593	5.976	8.266	2.314	1.077	1.233	2.865	1.426	1.332	12.938
11012	chr5	5419070	5421017	+	0	NA	Intergenic	Intergenic	-39792	NM_011074	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	7.804	6.093	2.254	3.771	5.221	3.171	9.772	8.213	4.841	4.543	4.451	2.936	8.723	9.839	10.104	6.312	4.865	8.058	0.944	1.074	1.213	0.781	0.313	0.640	4.137
10831	chr4	141507387	141511133	+	0	NA	intron (NM_001347235, intron 3 of 14)	B1_Mur3|SINE|Alu	29337	NM_001347235	56381	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	SPEN homolog, transcriptional regulator (Drosophila)	protein-coding	2.964	8.895	4.371	4.003	3.132	2.170	2.024	2.220	nan	4.019	1.213	0.930	2.509	3.702	2.424	3.359	1.722	nan	2.472	1.154	1.653	3.573	nan	1.430	2.914
935	chr1	182033905	182035370	+	0	NA	Intergenic	MIRb|SINE|MIR	-14657	NM_010135	13800	Mm.87759	NM_008680	ENSMUSG00000022995	Enah	Mena|NDPP-1|Ndpp1|WBP8	enabled homolog (Drosophila)	protein-coding	4.721	0.529	0.176	1.289	1.231	0.414	2.487	2.138	1.915	2.258	1.069	0.484	2.718	3.160	2.807	5.297	4.960	2.751	1.050	0.331	0.219	0.772	0.358	0.397	2.697
4192	chr13	59755302	59779454	+	0	NA	intron (NM_026921, intron 1 of 3)	intron (NM_026921, intron 1 of 3)	2411	NM_026921	69046	Mm.7884	NM_026921	ENSMUSG00000044792	Isca1	1810010A06Rik|Hbld2	iron-sulfur cluster assembly 1	protein-coding	nan	1.901	0.833	3.197	4.099	2.523	6.786	6.208	5.422	5.794	3.603	3.482	6.640	nan	5.951	nan	3.567	nan	1.549	1.124	1.306	1.708	2.180	1.763	nan
14104	chr8	27834823	27836582	+	0	NA	Intergenic	(GA)n|Simple_repeat|Simple_repeat	249151	NR_033590	666422	Mm.484413	NR_033590	ENSMUSG00000110372	Gm8096	EG666422	3-phosphoglycerate dehydrogenase pseudogene	pseudo	4.703	nan	0.593	1.156	1.648	0.838	4.539	9.523	3.671	3.513	5.565	3.955	6.487	5.890	5.741	5.261	4.493	3.908	1.844	1.306	1.670	nan	1.435	1.137	2.957
13257	chr7	72729135	72730740	+	0	NA	Intergenic	Intergenic	372131	NR_046024	625243	Mm.261798	NR_046024	ENSMUSG00000108383	Gm6567	-	predicted gene 6567	ncRNA	2.865	0.554	0.485	0.998	1.644	0.697	0.953	2.647	2.422	4.579	0.370	0.451	2.971	3.647	2.363	1.810	2.055	1.777	1.442	0.541	0.425	0.866	1.259	0.672	1.003
9825	chr3	135486908	135490349	+	0	NA	intron (NM_027288, intron 1 of 16)	ID_B1|SINE|B4	3017	NM_027288	110173	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	7.810	nan	1.532	6.680	3.286	1.850	8.611	4.231	3.891	6.110	4.618	1.947	6.560	8.549	8.774	9.206	7.487	9.270	1.995	1.659	1.529	2.717	2.909	2.649	12.646
9798	chr3	127628836	127635474	+	0	NA	promoter-TSS (NM_009718)	promoter-TSS (NM_009718)	-990	NM_009718	11924	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	3.142	0.712	0.367	2.769	3.536	2.331	4.754	4.992	4.714	4.355	6.666	4.464	5.441	6.254	3.533	nan	nan	nan	1.257	1.228	0.812	1.299	1.112	0.874	3.155
13681	chr7	125399869	125405157	+	0	NA	Intergenic	Intergenic	33652	NM_001145759	75861	Mm.349600	NM_001145759		4930571K23Rik	AI428146	RIKEN cDNA 4930571K23 gene	protein-coding	4.876	1.012	0.758	3.388	5.626	3.800	4.529	7.322	3.484	4.357	1.699	1.090	5.664	8.563	nan	4.594	6.544	4.047	0.821	1.100	0.688	0.550	1.338	0.898	2.096
11273	chr5	65275013	65278426	+	0	NA	intron (NM_001347358, intron 15 of 24)	G-rich|Low_complexity|Low_complexity	58920	NM_011258	19687	Mm.148877	NM_011258	ENSMUSG00000029191	Rfc1	140kDa|Alp145|RFC140|Recc1	replication factor C (activator 1) 1	protein-coding	2.853	7.953	4.859	1.480	1.360	0.747	1.830	1.252	1.087	1.156	0.879	0.993	1.562	2.046	2.306	1.702	1.314	2.030	1.025	0.814	0.821	nan	0.669	0.383	2.108
10084	chr4	53134117	53135321	+	0	NA	intron (NM_013454, intron 2 of 49)	intron (NM_013454, intron 2 of 49)	25176	NM_013454	11303	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	4.179	2.850	0.902	2.450	2.610	1.564	1.667	1.234	2.269	2.983	1.909	1.071	1.046	3.432	2.166	2.314	1.016	1.898	nan	0.987	0.204	0.916	0.993	0.160	3.115
81	chr1	34495600	34497303	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	-1979	NM_009355	21755	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	8.196	6.916	3.353	6.912	2.688	1.267	4.849	5.381	3.466	4.548	4.257	2.427	4.900	5.797	5.899	9.143	5.444	4.820	3.452	2.646	2.624	3.727	2.407	2.414	9.496
15769	chrX	93291510	93295358	+	0	NA	intron (NM_001305940, intron 4 of 5)	intron (NM_001305940, intron 4 of 5)	6927	NM_001305940	11878	Mm.275547	NM_007492	ENSMUSG00000035277	Arx	-	aristaless related homeobox	protein-coding	9.776	6.303	2.646	6.947	6.767	2.615	5.735	6.554	5.250	6.878	4.709	2.508	7.162	8.708	6.366	7.579	5.417	7.704	1.491	1.945	1.255	1.733	1.103	0.753	7.881
12388	chr6	86554948	86562748	+	0	NA	intron (NR_037960, intron 3 of 4)	B1F|SINE|Alu	31447	NR_037961	72012	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	4.021	2.754	0.991	nan	4.446	2.262	6.746	7.373	3.803	4.969	8.676	3.745	5.828	8.344	5.839	7.095	3.792	nan	nan	1.173	0.927	1.104	1.138	0.950	5.248
1300	chr10	57717553	57719519	+	0	NA	intron (NM_008863, intron 4 of 5)	L1_Mus4|LINE|L1	-66387	NM_021272	12140	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	6.768	4.772	2.175	6.876	2.317	1.005	4.260	5.335	5.066	6.185	4.011	3.741	5.507	5.568	5.570	6.651	5.522	7.055	4.372	1.376	1.645	3.965	1.994	1.459	7.139
2598	chr11	87397787	87398798	+	0	NA	intron (NM_053269, intron 3 of 8)	RMER19B|LTR|ERVK	6203	NM_053269	114714	Mm.37376	NM_053269	ENSMUSG00000007646	Rad51c	R51H3|Rad51l2	RAD51 paralog C	protein-coding	5.652	2.576	0.797	5.400	4.084	3.026	7.217	3.227	1.883	3.279	2.085	1.070	3.577	5.064	3.404	5.483	3.190	3.798	0.913	1.475	0.694	nan	1.116	1.157	6.855
7433	chr18	82714590	82716860	+	0	NA	Intergenic	Intergenic	-4556	NR_039572	100628586		NR_039572	ENSMUSG00000092638	Mir5112	mmu-mir-5112|mu-mir-5112	microRNA 5112	ncRNA	5.293	1.707	0.460	1.842	0.745	0.325	2.198	2.924	1.385	nan	6.651	3.547	1.447	1.082	1.588	3.736	2.331	3.836	0.955	nan	0.612	1.380	0.501	0.576	6.151
15066	chr9	50343878	50345464	+	0	NA	Intergenic	Intergenic	-111489	NR_131161	71873		NR_131161	ENSMUSG00000110916	2310003N18Rik	-	RIKEN cDNA 2310003N18 gene	ncRNA	1.617	1.857	1.216	1.980	1.023	0.997	2.024	2.041	2.402	2.762	4.608	3.089	3.196	4.049	2.484	2.460	1.315	2.238	1.956	1.484	0.842	nan	1.217	0.685	2.524
204	chr1	58415916	58417355	+	0	NA	intron (NR_027854, intron 5 of 10)	B1_Mus1|SINE|Alu	7453	NR_027853	12747	Mm.1761	NM_009905	ENSMUSG00000026034	Clk1	STY	CDC-like kinase 1	protein-coding	3.250	0.674	0.419	0.823	0.702	0.893	4.504	5.637	2.410	1.883	2.980	2.887	3.748	3.900	3.478	nan	2.517	2.470	0.875	1.100	0.483	0.654	0.826	0.532	1.315
9871	chr3	148650187	148654327	+	0	NA	Intergenic	Intergenic	302378	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	8.258	1.588	0.724	9.083	3.727	2.956	13.449	7.235	5.096	11.366	1.592	3.382	7.806	8.250	9.314	8.688	7.324	9.377	5.613	2.028	3.907	5.087	4.291	6.428	16.020
5190	chr15	57721234	57725396	+	0	NA	intron (NM_199449, intron 1 of 3)	ORSL|DNA|hAT-Tip100	28648	NM_199449	387609	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	7.526	10.172	4.078	6.250	3.755	1.219	6.140	9.115	nan	nan	3.445	2.219	7.598	7.700	6.863	6.596	6.611	6.055	4.047	4.155	1.958	4.030	3.526	2.469	6.793
13794	chr7	136428241	136431107	+	0	NA	Intergenic	B4A|SINE|B4	-80259	NR_040459	330664	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	0.589	nan	0.318	0.282	0.098	0.042	0.921	5.072	nan	0.528	0.298	0.491	1.302	0.754	1.528	1.662	2.148	1.098	0.655	0.469	0.528	0.960	0.483	0.130	0.896
814	chr1	164223923	164228189	+	0	NA	Intergenic	RLTR4_MM-int|LTR|ERV1	-22990	NM_054087	116914	Mm.35444	NM_054087	ENSMUSG00000040918	Slc19a2	AV276020|AW322295|DDA1|THTR1|TRMA	solute carrier family 19 (thiamine transporter), member 2	protein-coding	3.287	2.379	1.281	nan	0.652	0.689	0.431	0.591	nan	1.082	8.507	5.049	nan	0.907	nan	1.836	0.968	2.147	1.138	1.118	0.862	nan	nan	0.437	nan
4611	chr14	41775653	41782570	+	0	NA	Intergenic	Intergenic	-6707	NM_001244671	100042055	Mm.429109	NM_001244671	ENSMUSG00000095226	Gm10377	ENSMUSG00000072606	predicted gene 10377	protein-coding	6.707	9.228	3.985	6.823	2.687	1.691	4.407	nan	4.445	6.067	5.217	3.201	4.960	7.321	6.242	7.108	3.776	6.155	2.220	1.690	1.693	2.410	1.569	1.612	9.630
7242	chr18	54602988	54606170	+	0	NA	Intergenic	Intergenic	-7165	NR_045400	328957	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA	1.657	nan	0.265	nan	1.546	0.854	2.314	nan	1.237	1.545	1.434	1.236	3.073	1.847	1.611	1.933	2.428	nan	nan	3.916	3.285	nan	5.472	5.079	nan
13555	chr7	116577404	116588614	+	0	NA	Intergenic	L1Md_F2|LINE|L1	78640	NM_001130479	53322	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0.827	0.530	0.324	1.681	0.949	0.493	0.365	1.039	0.830	1.073	2.117	3.469	0.329	nan	0.385	0.679	0.565	0.701	5.029	3.377	2.105	7.686	4.107	3.197	0.527
11401	chr5	89506934	89513470	+	0	NA	Intergenic	MusHAL1|LINE|L1	-17227	NM_133192	104443	Mm.447881	NM_133192	ENSMUSG00000035528	Npffr2	Gpr74|HG31|NPFF2	neuropeptide FF receptor 2	protein-coding	4.359	0.544	0.441	1.790	2.890	1.373	3.263	4.291	3.103	3.810	0.879	0.942	4.736	5.360	3.587	4.432	4.014	3.743	0.469	0.512	0.244	0.331	0.459	0.557	2.386
10173	chr4	63008347	63009647	+	0	NA	intron (NM_028326, intron 1 of 14)	L1MC4|LINE|L1	43423	NM_028326	72701	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	2.241	0.648	0.350	0.914	1.790	1.325	1.176	2.812	1.131	1.520	1.863	1.286	0.572	3.337	1.175	2.729	0.764	1.774	1.495	0.653	0.283	nan	nan	0.757	2.524
2492	chr11	77325895	77330639	+	0	NA	intron (NM_177710, intron 2 of 14)	intron (NM_177710, intron 2 of 14)	-20013	NM_001291190	237860	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot homolog 2 (Drosophila)	protein-coding	nan	6.642	1.470	6.335	1.790	0.814	2.374	4.038	3.469	5.083	2.157	1.261	3.056	nan	nan	nan	2.894	4.867	4.780	2.320	nan	7.128	3.577	3.123	6.611
11596	chr5	115129722	115133328	+	0	NA	intron (NM_175352, intron 1 of 4)	B3|SINE|B2	3450	NM_175352	106840	Mm.29241	NM_175352	ENSMUSG00000046562	Unc119b	AA407659|AI414892	unc-119 lipid binding chaperone B	protein-coding	4.928	4.318	1.288	5.427	1.250	1.014	1.361	1.602	2.311	1.936	4.024	2.646	1.466	1.482	1.913	2.349	1.539	3.681	nan	nan	1.251	3.210	nan	0.475	3.690
14275	chr8	71551113	71552268	+	0	NA	Intergenic	Intergenic	7181	NM_001100462	434325	Mm.33613	NM_001100462	ENSMUSG00000043664	Tmem221	-	transmembrane protein 221	protein-coding	3.821	0.610	0.679	1.353	1.407	0.041	2.045	6.297	1.486	1.183	2.156	1.299	1.577	3.595	2.410	3.318	1.779	2.764	1.029	3.154	1.200	3.244	1.555	0.744	2.145
11133	chr5	32491084	32498933	+	0	NA	Intergenic	Intergenic	36038	NM_172707	19046	Mm.241931	NM_172707	ENSMUSG00000014956	Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding	4.490	0.911	0.472	3.489	6.216	3.642	3.324	4.117	4.094	4.365	4.769	2.835	2.755	5.189	3.454	2.963	2.154	3.960	0.973	0.907	0.692	0.842	0.959	0.485	2.722
5192	chr15	57814008	57821367	+	0	NA	intron (NM_199449, intron 2 of 3)	MLTR73|LTR|ERV1	74731	NM_024207	67819	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	6.379	1.289	0.612	nan	1.256	0.510	4.503	9.252	nan	nan	4.611	0.856	3.993	5.389	6.154	6.749	6.672	4.698	0.763	0.779	0.384	1.151	0.620	0.358	9.228
15662	chrX	7339213	7343860	+	0	NA	Intergenic	ORR1A3-int|LTR|ERVL-MaLR	-22178	NM_001243762	12728	Mm.486257	NM_016691	ENSMUSG00000004317	Clcn5	5430408K11Rik|ClC-5|Clc4-1|Clc5|Clcn4-1|D930009B12Rik|DXImx42e|Sfc13|T25545	chloride channel, voltage-sensitive 5	protein-coding	6.072	3.113	1.103	4.550	3.422	1.624	4.205	5.415	2.574	5.096	3.296	1.873	3.822	6.320	4.798	6.665	3.455	4.201	1.841	1.931	1.214	1.935	1.864	1.439	7.350
884	chr1	173341509	173343276	+	0	NA	intron (NM_053199, intron 5 of 8)	intron (NM_053199, intron 5 of 8)	-8889	NM_010045	13349	Mm.6393	NM_010045	ENSMUSG00000037872	Ackr1	AA162249|CCBP1|CD234|Darc|Dfy|ESTM35|FY|GPD	atypical chemokine receptor 1 (Duffy blood group)	protein-coding	12.121	13.999	5.334	10.031	6.282	3.551	8.805	7.778	6.384	12.056	6.907	3.600	6.515	9.157	8.234	12.560	7.684	8.172	6.960	6.107	4.184	5.752	6.167	5.701	13.792
13707	chr7	127995994	127998166	+	0	NA	Intergenic	B1_Mur3|SINE|Alu	-3213	NM_023258	66824	Mm.24163	NM_023258	ENSMUSG00000030793	Pycard	9130417A21Rik|Asc|CARD5|TMS-1|TNS1|masc	PYD and CARD domain containing	protein-coding	1.590	1.528	1.344	1.530	1.889	1.226	2.724	2.738	1.730	1.380	1.882	1.439	0.915	1.293	nan	0.954	1.499	1.183	1.224	2.976	3.489	1.816	1.061	1.052	1.029
8888	chr2	157242608	157262713	+	0	NA	intron (NM_001039557, intron 8 of 24)	RMER6A|LTR|ERVK	-26438	NM_019642	20014	Mm.22130	NM_019642	ENSMUSG00000027642	Rpn2	1300012C06Rik|AV261018|Rpn-2	ribophorin II	protein-coding	6.797	2.046	0.681	4.737	4.026	2.501	6.484	8.892	nan	nan	5.437	3.192	5.572	7.582	6.447	8.533	5.212	6.608	nan	1.134	1.124	1.646	1.204	1.375	9.725
8585	chr2	119852680	119860503	+	0	NA	Intergenic	Intergenic	-40637	NM_001164274	29808	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	4.999	3.035	1.024	2.166	0.855	0.443	3.928	5.981	1.799	2.711	1.062	0.865	nan	3.499	3.293	nan	3.050	6.560	2.357	0.851	0.626	2.736	1.109	0.672	9.250
4927	chr14	102200136	102206304	+	0	NA	Intergenic	L1Md_T|LINE|L1	362597	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	4.671	nan	0.670	3.627	5.076	2.546	5.471	6.730	6.115	5.737	4.368	2.924	6.631	7.861	5.650	5.987	3.593	6.797	3.121	1.587	0.812	1.625	3.649	2.774	nan
7710	chr19	32564847	32574181	+	0	NA	Intergenic	Intergenic	-26201	NM_001201470	23972	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	nan	7.687	5.160	nan	0.440	0.208	1.029	nan	0.656	0.531	nan	0.392	0.434	0.643	0.802	0.684	0.989	0.723	nan	0.517	0.253	0.731	nan	0.286	0.655
749	chr1	154848296	154853700	+	0	NA	Intergenic	Intergenic	-125078	NM_009782	12290	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	7.725	0.522	0.323	2.456	2.372	1.178	3.588	2.582	4.879	7.643	0.985	0.786	4.001	5.783	2.908	4.821	3.929	5.039	nan	0.477	0.317	1.014	nan	0.361	3.325
4910	chr14	99722923	99724803	+	0	NA	Intergenic	L1Md_F2|LINE|L1	425172	NM_009769	12224	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding	4.369	nan	0.682	2.046	4.241	3.078	5.543	8.377	3.346	3.831	5.686	3.627	3.929	5.489	6.676	5.150	2.519	4.340	1.731	0.773	0.527	1.008	1.601	1.236	5.431
15762	chrX	91366530	91369181	+	0	NA	Intergenic	L1MCb|LINE|L1	-24645	NM_001114678	278167	Mm.473682	NM_001114678	ENSMUSG00000094861	Gm5072	EG278167	predicted gene 5072	protein-coding	7.035	12.207	4.212	8.449	7.975	4.664	5.660	5.620	4.211	12.808	5.977	2.752	5.829	7.503	6.160	8.560	4.592	6.860	4.434	1.588	3.357	4.673	2.766	3.726	12.535
11847	chr5	137880845	137882522	+	0	NA	Intergenic	Intergenic	-9925	NM_001024932	545812	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	2.004	0.761	0.524	3.802	4.051	3.398	2.258	2.712	5.806	8.676	2.439	3.223	4.560	4.942	3.314	4.390	1.886	3.883	1.022	1.109	1.188	1.373	1.232	0.780	3.675
9625	chr3	103081982	103085068	+	0	NA	intron (NM_001033303, intron 4 of 15)	ID_B1|SINE|B4	9511	NM_001033303	229665	Mm.331272	NM_001033303	ENSMUSG00000070385	Ampd1	AI553520|Ampd-1	adenosine monophosphate deaminase 1	protein-coding	10.005	15.171	7.646	8.594	7.518	6.394	14.028	10.560	5.122	13.725	8.552	4.268	9.483	13.697	9.853	9.386	10.053	8.676	7.806	7.015	5.957	8.181	8.913	9.834	16.561
4408	chr13	111184625	111189834	+	0	NA	Intergenic	Intergenic	42202	NR_045908	73129	Mm.417826	NR_045908		3110015C05Rik	-	RIKEN cDNA 3110015C05 gene	ncRNA	5.425	nan	0.674	7.926	2.849	1.417	3.744	3.121	4.108	6.436	6.613	3.818	2.882	3.491	5.528	6.741	3.693	6.871	2.166	1.448	1.530	nan	1.484	1.408	8.356
8922	chr2	160515882	160517337	+	0	NA	Intergenic	Intergenic	-129288	NM_009408	21969	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	2.309	1.691	1.747	3.017	2.151	1.507	2.762	3.525	1.969	2.181	0.952	0.949	3.937	4.207	1.565	2.487	3.242	3.065	nan	0.824	0.613	0.787	0.502	0.637	nan
11233	chr5	53365754	53392408	+	0	NA	Intergenic	Intergenic	111975	NM_001145433	66278	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	6.033	0.521	0.378	3.919	3.318	2.345	7.807	4.380	6.482	8.585	1.270	0.832	6.845	7.432	6.674	nan	5.695	7.446	0.889	1.113	1.262	1.117	0.701	0.729	7.192
4846	chr14	75308427	75315249	+	0	NA	intron (NM_026083, intron 7 of 18)	RSINE1|SINE|B4	27465	NM_026083	67302	Mm.74704	NM_026083	ENSMUSG00000022000	Zc3h13	2600010B19Rik|3110050K21Rik|4930570G11Rik|C87618	zinc finger CCCH type containing 13	protein-coding	4.217	9.503	5.778	4.511	4.601	3.373	2.235	3.967	3.343	2.939	2.835	2.437	2.417	3.301	3.913	3.831	2.235	3.485	1.362	1.817	1.528	2.093	0.702	0.667	5.132
6059	chr16	37996162	37998924	+	0	NA	intron (NM_153394, intron 8 of 9)	intron (NM_153394, intron 8 of 9)	-19780	NR_040565	75175	Mm.399335	NR_040565		4930542C21Rik	-	RIKEN cDNA 4930542C21 gene	ncRNA	5.120	0.678	0.674	2.859	2.423	1.890	4.606	6.505	3.436	3.269	1.788	1.760	5.611	7.405	5.183	6.287	5.480	4.546	2.496	1.501	0.935	1.315	2.724	2.398	4.335
13156	chr7	51826179	51849269	+	0	NA	Intergenic	L1_Mus4|LINE|L1	-24291	NM_001330608	14453	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	4.301	2.655	1.538	3.704	3.767	2.895	7.354	5.965	3.570	5.694	0.534	0.526	7.084	7.884	6.476	6.939	6.096	5.693	1.522	1.682	1.383	1.529	1.949	1.707	8.544
12379	chr6	86166501	86171040	+	0	NA	Intergenic	Intergenic	-26457	NM_031199	21802	Mm.137222	NM_031199	ENSMUSG00000029999	Tgfa	wa-1|wa1	transforming growth factor alpha	protein-coding	3.526	1.164	1.078	nan	2.002	0.704	4.109	8.793	2.025	2.211	3.954	2.050	3.529	4.026	4.518	6.662	4.808	nan	nan	1.189	0.636	2.787	1.039	0.418	5.581
12116	chr6	31009388	31044947	+	0	NA	Intergenic	L1_Rod|LINE|L1	35580	NR_029744	387222		NR_029744	ENSMUSG00000065610	Mir29a	Mirn29a|mir-29a|mmu-mir-29a	microRNA 29a	ncRNA	6.029	3.008	1.343	5.071	5.537	2.704	10.537	8.291	6.508	7.177	5.123	3.881	10.011	12.742	10.884	12.690	6.716	nan	nan	1.434	0.997	3.072	1.222	0.824	8.171
10719	chr4	135689744	135692870	+	0	NA	intron (NM_174851, intron 2 of 6)	ORR1D2|LTR|ERVL-MaLR	4850	NM_174851	242700	Mm.259623	NM_174851	ENSMUSG00000062157	Ifnlr1	CRF2-12|Il28ra	interferon lambda receptor 1	protein-coding	5.026	3.491	1.301	6.552	3.600	2.086	7.356	2.592	nan	5.300	3.220	1.678	3.274	8.335	5.462	5.423	2.114	4.520	5.215	5.183	3.836	7.411	12.536	9.606	6.122
9499	chr3	93167763	93172991	+	0	NA	Intergenic	IAPEz-int|LTR|ERVK	25590	NM_001081200	381457	Mm.458570	NM_001081200	ENSMUSG00000078657	Crnn	Gm1015	cornulin	protein-coding	3.837	0.626	0.430	1.726	1.460	0.514	6.541	3.707	1.444	1.585	3.613	0.866	6.241	4.216	4.331	5.578	5.594	4.226	0.571	0.514	0.432	0.403	0.484	0.396	3.653
5286	chr15	72557435	72559112	+	0	NA	Intergenic	Lx4A|LINE|L1	-11994	NM_001033876	223604	Mm.386856	NM_001033876	ENSMUSG00000036760	Kcnk9	Task3	potassium channel, subfamily K, member 9	protein-coding	2.889	1.013	0.437	3.133	0.818	0.462	2.441	1.341	2.484	2.206	0.502	0.202	3.614	4.746	2.487	3.187	1.434	5.690	0.809	0.541	0.214	0.784	0.568	0.200	4.094
7248	chr18	55064841	55071615	+	0	NA	Intergenic	MER2|DNA|TcMar-Tigger	-78048	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	6.331	nan	1.357	nan	4.553	1.692	8.258	5.193	5.363	5.877	4.037	3.915	9.551	7.464	6.490	9.194	5.612	nan	nan	1.076	0.926	nan	1.746	0.938	6.195
13461	chr7	105319366	105321873	+	0	NA	Intergenic	ORR1A4-int|LTR|ERVL-MaLR	6613	NM_146750	258745	Mm.377668	NM_146750	ENSMUSG00000073907	Olfr689	MOR40-3	olfactory receptor 689	protein-coding	5.338	1.733	1.078	6.051	5.624	3.096	7.088	9.807	4.255	4.336	8.954	4.907	5.347	8.769	6.267	5.923	4.327	5.152	nan	1.901	1.324	4.070	1.276	1.296	7.726
13533	chr7	109112371	109122840	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	-34274	NM_001311161	320360	Mm.71007	NM_178780	ENSMUSG00000048330	Ric3	E130307J04Rik	RIC3 acetylcholine receptor chaperone	protein-coding	7.884	3.639	1.650	5.823	7.767	6.019	8.047	10.041	5.234	6.196	5.165	3.462	8.481	10.129	6.958	nan	6.334	nan	nan	3.799	3.007	3.847	4.051	3.516	7.113
253	chr1	64577888	64580501	+	0	NA	intron (NM_001037726, intron 6 of 6)	ORR1F|LTR|ERVL-MaLR	37974	NM_025964	67099	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	16.333	19.471	9.103	12.556	9.318	7.680	13.050	9.387	7.843	19.706	10.674	7.106	9.989	12.395	10.296	16.005	11.828	10.855	7.611	7.428	6.311	7.195	7.727	9.198	18.274
6685	chr17	47016480	47018361	+	0	NA	Intergenic	MYSERV-int|LTR|ERVK	-6888	NM_001177374	224826	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|ENSMUSG00000043296|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	4.963	2.431	1.477	4.888	4.860	3.289	3.510	6.405	3.993	3.134	2.805	2.443	2.294	5.163	4.232	3.918	3.674	2.778	1.486	1.788	2.101	2.416	1.394	1.375	2.901
14431	chr8	89069700	89071090	+	0	NA	Intergenic	Intergenic	-26233	NM_021390	58198	Mm.214361	NM_021390	ENSMUSG00000031665	Sall1	Msal-3	sal-like 1 (Drosophila)	protein-coding	2.152	0.416	0.280	1.262	0.602	0.538	0.954	1.271	nan	2.566	0.152	0.216	2.782	4.607	1.671	2.690	2.378	1.223	nan	0.885	0.088	0.667	0.614	0.338	4.207
10670	chr4	134003816	134011610	+	0	NA	intron (NM_145833, intron 3 of 3)	intron (NM_145833, intron 3 of 3)	-6849	NM_026144	67422	Mm.100290	NM_026144	ENSMUSG00000012117	Dhdds	3222401G21Rik|CIT|DS|HDS|W91638	dehydrodolichyl diphosphate synthase	protein-coding	nan	0.670	0.351	1.586	1.201	0.599	1.194	1.112	nan	0.742	0.354	0.679	0.313	1.005	0.824	1.025	0.657	nan	8.323	4.749	4.382	9.947	6.979	6.353	0.762
7252	chr18	55138249	55153123	+	0	NA	Intergenic	Intergenic	-155506	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	10.497	nan	3.154	nan	7.985	4.385	8.535	nan	6.031	8.521	3.047	3.476	nan	10.137	6.608	8.981	8.526	nan	nan	4.742	3.122	nan	6.391	5.282	nan
5928	chr16	24236322	24238547	+	0	NA	Intergenic	Intergenic	-155916	NM_178665	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	4.936	3.536	2.604	2.851	2.364	0.950	1.912	8.111	2.638	2.266	5.882	4.601	nan	2.665	2.383	3.488	1.641	2.960	1.069	1.567	0.727	1.129	nan	0.599	2.500
3278	chr12	35739326	35741391	+	0	NA	Intergenic	L1Md_A|LINE|L1	-45240	NR_045050	71581	Mm.100110	NR_045050		9130015A21Rik	100043575|Gm4527	RIKEN cDNA 9130015A21 gene	ncRNA	5.983	4.429	3.091	2.801	3.227	1.186	2.894	2.158	3.524	3.706	2.018	1.733	4.906	5.213	2.756	3.287	4.253	6.656	nan	0.552	0.178	0.415	0.259	0.125	2.787
9841	chr3	138522151	138524925	+	0	NA	Intergenic	Intergenic	-2653	NM_007917	13684	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	2.728	3.845	2.606	1.355	0.725	0.214	4.569	1.422	1.026	1.475	0.463	0.553	3.917	2.840	3.379	3.645	3.604	1.922	0.866	0.902	0.177	1.651	0.570	0.413	7.641
2427	chr11	72420029	72422388	+	0	NA	Intergenic	RSINE1|SINE|B4	-9495	NM_177776	276829	Mm.46732	NM_177776	ENSMUSG00000045667	Smtnl2	D130058I21Rik	smoothelin-like 2	protein-coding	7.526	11.708	2.612	11.450	4.186	4.123	7.315	8.019	4.725	17.990	7.236	3.519	6.991	9.305	8.091	11.395	5.212	9.440	4.176	1.590	3.753	6.226	nan	3.679	14.983
10163	chr4	62398587	62399947	+	0	NA	intron (NM_139291, intron 3 of 3)	intron (NM_139291, intron 3 of 3)	9356	NM_139291	66440	Mm.109930	NM_139291	ENSMUSG00000066149	Cdc26	2010012C09Rik	cell division cycle 26	protein-coding	3.784	2.806	1.368	2.916	1.237	0.519	4.094	3.269	1.722	1.954	3.005	1.527	2.970	3.281	2.330	2.921	1.659	2.787	nan	1.602	0.357	1.139	1.312	0.668	2.943
7223	chr18	46900526	46903120	+	0	NA	intron (NM_029008, intron 19 of 19)	MERVL_2A-int|LTR|ERVL	-19992	NM_001033446	381142	Mm.329423	NM_001033446	ENSMUSG00000073568	Arl14epl	Gm949	ADP-ribosylation factor-like 14 effector protein-like	protein-coding	10.894	9.526	2.485	9.339	5.971	2.513	6.726	10.430	5.753	10.726	5.674	3.823	9.141	9.333	8.793	10.219	5.944	8.821	4.329	3.142	1.974	6.528	3.608	3.351	15.125
13074	chr7	30022447	30024788	+	0	NA	exon (NM_001167873, exon 10 of 10)	exon (NM_001167873, exon 10 of 10)	27779	NM_011748	243906	Mm.347644	NM_011748	ENSMUSG00000053985	Zfp14	4732429I09Rik|Krox-9|Zfp-14|mKIAA1559	zinc finger protein 14	protein-coding	4.422	5.652	4.619	7.062	7.375	6.244	6.083	6.381	3.840	3.975	2.961	2.323	6.261	7.731	5.249	6.044	5.502	6.067	3.665	3.151	4.221	3.303	4.495	4.372	5.716
63	chr1	25885443	25889309	+	0	NA	Intergenic	Lx5|LINE|L1	-57669	NM_175642	210933	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding	0.241	nan	0.374	0.174	0.074	0.031	0.291	0.167	0.225	0.217	0.130	0.076	0.090	0.067	0.163	0.518	0.271	0.249	1.274	3.018	2.061	4.311	1.238	1.157	0.323
5009	chr15	3975705	3977919	+	0	NA	intron (NM_134099, intron 2 of 6)	RSINE1|SINE|B4	2761	NM_134099	106052	Mm.234191	NM_134099	ENSMUSG00000022184	Fbxo4	1700096C12Rik|AI851261|AW494535|Fbx4	F-box protein 4	protein-coding	7.510	11.532	2.781	7.899	2.447	1.189	6.644	5.221	3.853	8.253	5.858	2.311	7.345	5.631	8.709	9.687	6.845	8.854	5.871	3.006	2.568	7.020	4.138	5.325	12.468
1637	chr10	94759163	94761181	+	0	NA	intron (NM_029852, intron 10 of 15)	Lx|LINE|L1	71382	NM_029852	77048	Mm.296971	NM_029852	ENSMUSG00000020024	Cep83	2600001G24Rik|4921537D05Rik|5730513H21Rik|Ccdc41	centrosomal protein 83	protein-coding	6.387	4.327	1.291	5.438	2.317	0.976	1.389	1.431	2.970	3.447	2.413	2.734	1.976	3.046	2.911	3.209	1.967	3.818	2.285	1.803	0.731	2.475	1.136	0.345	5.852
13283	chr7	73948321	73949395	+	0	NA	intron (NM_009181, intron 5 of 5)	intron (NM_009181, intron 5 of 5)	64824	NM_009181	20450	Mm.4954	NM_009181	ENSMUSG00000025789	St8sia2	AI323367|ST8SiaII|STX|Siat8b	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	protein-coding	2.564	0.385	0.342	0.622	0.225	0.276	4.839	4.125	1.504	1.677	0.655	0.981	4.920	4.028	3.441	2.789	2.336	2.072	0.914	1.025	0.743	1.015	1.557	0.950	nan
7919	chr2	3055110	3060894	+	0	NA	Intergenic	L1MB4|LINE|L1	-56222	NM_001310434	269233	Mm.23044	NM_001081161	ENSMUSG00000050530	Fam171a1	9630050M13Rik|AA409679	family with sequence similarity 171, member A1	protein-coding	nan	0.556	0.297	1.568	0.509	0.256	0.820	1.260	0.984	0.726	0.997	1.012	0.604	1.013	0.878	0.840	0.493	1.111	6.752	2.072	1.564	6.102	4.103	3.269	0.695
15610	chr9	121279242	121282201	+	0	NA	Intergenic	Intergenic	-3549	NM_177589	209012	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	4.984	6.978	2.648	6.055	1.889	0.903	2.127	4.146	2.495	3.299	3.341	1.393	2.591	3.699	3.617	4.682	2.367	4.434	2.985	2.788	1.322	4.851	nan	1.807	6.544
6377	chr17	23875366	23878274	+	0	NA	Intergenic	Intergenic	-4056	NM_019910	13184	Mm.371556	NM_019910	ENSMUSG00000096445	Dcpp1	BC005655|C86550|Dcpp|Dcpp-1|p20	demilune cell and parotid protein 1	protein-coding	3.065	2.690	0.888	3.651	1.208	0.841	4.214	2.169	2.821	4.618	1.489	1.412	5.919	6.133	3.234	3.986	1.153	3.424	5.075	2.008	2.440	5.759	2.685	2.601	5.509
1105	chr10	13683578	13688468	+	0	NA	intron (NM_001347362, intron 4 of 5)	intron (NM_001347362, intron 4 of 5)	-132881	NM_001347361	56535	Mm.282711	NM_019961	ENSMUSG00000019809	Pex3	1700014F15Rik|2810027F19Rik|2900010N04Rik	peroxisomal biogenesis factor 3	protein-coding	10.808	16.841	6.328	12.917	7.133	4.906	8.157	7.931	6.201	13.053	7.826	6.153	6.474	8.353	8.665	11.052	7.305	9.248	5.911	3.476	4.736	6.696	4.891	7.044	15.609
15813	chrX	136218526	136220819	+	0	NA	Intergenic	ORR1A2|LTR|ERVL-MaLR	-4159	NM_009052	19716	Mm.422943	NM_009052	ENSMUSG00000050071	Bex1	AA407839|AU018692|Bex4|Rex3	brain expressed X-linked 1	protein-coding	5.306	3.198	1.088	4.555	2.858	0.974	3.772	5.111	3.152	4.238	2.967	2.282	4.231	5.281	4.396	5.345	3.246	4.913	2.679	2.544	1.190	3.236	2.592	2.153	5.929
9006	chr2	166645328	166647637	+	0	NA	intron (NM_177782, intron 2 of 39)	intron (NM_177782, intron 2 of 39)	-26236	NR_105783	102465188		NR_105783	ENSMUSG00000098675	Mir6364	Gm27327|mmu-mir-6364	microRNA 6364	ncRNA	4.994	2.389	1.353	2.431	5.893	2.109	3.907	4.588	2.739	3.599	0.989	0.652	3.143	4.521	2.989	4.566	3.327	nan	4.398	4.306	2.095	3.404	2.873	1.696	5.731
15160	chr9	61228013	61231033	+	0	NA	Intergenic	Intergenic	64286	NR_045334	622037	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	2.752	1.374	0.478	1.467	0.888	0.529	4.595	3.964	1.751	2.121	1.904	0.552	3.120	5.253	3.227	3.911	2.301	2.885	1.848	1.658	1.611	2.527	1.911	1.564	5.203
10497	chr4	123295747	123303011	+	0	NA	TTS (NM_130881)	TTS (NM_130881)	16094	NM_148917	230721	Mm.277091	NM_130881	ENSMUSG00000011257	Pabpc4	-	poly(A) binding protein, cytoplasmic 4	protein-coding	4.707	0.950	0.751	3.770	5.012	3.146	2.030	3.346	2.921	2.903	2.372	1.932	1.668	3.469	nan	2.678	1.629	5.760	1.398	1.665	1.445	1.345	1.256	1.162	3.488
14270	chr8	70479951	70481779	+	0	NA	Intergenic	Intergenic	-3922	NM_178771	234378	Mm.187090	NM_172052	ENSMUSG00000055707	Klhl26	C630013N10Rik|Klkl26	kelch-like 26	protein-coding	3.798	9.001	5.149	4.195	1.944	0.724	1.818	1.335	1.782	2.194	2.017	1.326	1.665	1.403	1.783	1.633	1.132	1.898	nan	1.836	1.021	1.153	0.809	0.573	nan
1334	chr10	59714884	59716480	+	0	NA	intron (NM_001291443, intron 1 of 12)	intron (NM_001291443, intron 1 of 12)	13119	NM_001291443	216001	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	7.578	3.891	1.961	2.251	3.270	2.070	4.849	4.590	2.043	2.035	1.939	0.597	2.407	4.167	3.575	3.640	3.862	2.289	nan	0.790	0.610	0.837	0.483	0.479	5.057
11946	chr5	145875103	145878763	+	0	NA	intron (NM_007818, intron 2 of 12)	RSINE1|SINE|B4	2921	NM_007818	13112	Mm.332844	NM_007818	ENSMUSG00000056035	Cyp3a11	AI256190|Cyp3a|IIIAm1|Pcn	cytochrome P450, family 3, subfamily a, polypeptide 11	protein-coding	10.525	10.503	5.497	8.992	6.263	4.467	10.369	8.820	nan	10.382	8.429	4.636	6.951	10.710	8.115	8.736	6.905	8.095	2.362	2.883	3.039	3.137	1.844	2.300	11.000
9711	chr3	108848247	108849617	+	0	NA	Intergenic	Intergenic	-8430	NM_011504	20912	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	1.523	0.704	0.615	0.953	0.962	0.307	3.193	1.383	1.462	1.641	0.586	0.510	2.183	2.910	3.102	2.261	2.355	2.459	0.792	0.842	0.179	0.753	0.647	0.140	1.219
2096	chr11	43360850	43364182	+	0	NA	Intergenic	RMER13A2|LTR|ERVK	11945	NR_029558	387164		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	4.835	0.552	0.144	2.673	2.108	0.849	5.593	2.625	2.605	3.832	0.979	0.694	4.321	3.133	5.627	7.120	4.947	6.815	nan	0.696	0.534	nan	nan	0.221	6.983
2805	chr11	101121025	101123501	+	0	NA	intron (NM_134024, intron 3 of 10)	intron (NM_134024, intron 3 of 10)	2132	NM_134024	103733	Mm.479145	NM_134024	ENSMUSG00000035198	Tubg1	1500010O08Rik|AI451582|AI503389|Tubg	tubulin, gamma 1	protein-coding	5.219	nan	0.542	4.344	1.854	1.011	6.554	6.887	2.117	4.442	3.224	1.522	6.682	6.693	5.745	7.853	4.199	5.359	1.481	nan	1.365	2.372	nan	nan	9.984
3776	chr12	114237515	114239953	+	0	NA	Intergenic	L1Md_A|LINE|L1	230732	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	8.858	10.153	3.917	9.283	5.108	3.483	6.075	5.600	4.872	11.711	4.848	3.046	6.784	8.662	7.850	10.680	6.420	7.217	4.530	2.575	3.256	4.478	2.862	4.274	16.180
9103	chr2	179946839	179972596	+	0	NA	intron (NM_001081092, intron 1 of 14)	intron (NM_001081092, intron 1 of 14)	16929	NM_001081092	228980	Mm.235542	NM_001081092	ENSMUSG00000039117	Taf4	135kDa|AI450312|TAFII130|TAFII135|Taf2c1|Taf4a	TATA-box binding protein associated factor 4	protein-coding	7.551	1.361	0.430	7.099	5.651	3.968	8.962	11.397	4.921	6.802	5.099	3.635	8.071	9.804	8.102	nan	6.512	nan	1.701	1.558	1.577	3.280	1.277	1.259	nan
1784	chr10	118303841	118307887	+	0	NA	Intergenic	Intergenic	-10826	NM_054079	116849	Mm.213193	NM_054079	ENSMUSG00000090461	Iltifb	IL-22b|IL-TIFb|Il22b	interleukin 10-related T cell-derived inducible factor beta	protein-coding	10.186	9.495	3.736	8.744	5.952	4.537	8.530	7.492	4.302	11.249	4.257	3.395	5.902	8.705	7.742	8.442	7.398	nan	7.149	5.417	6.321	6.967	7.238	8.769	15.510
938	chr1	182232018	182233949	+	0	NA	Intergenic	RLTR1B-int|LTR|ERV1	49776	NM_007853	13244	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	4.317	2.413	0.924	3.817	1.312	0.402	1.899	1.825	3.032	2.921	1.491	0.911	1.752	2.761	2.869	3.925	1.405	4.581	0.871	0.807	0.553	0.955	0.495	0.346	3.700
2149	chr11	50029168	50030870	+	0	NA	intron (NM_001290750, intron 1 of 7)	intron (NM_001290750, intron 1 of 7)	4688	NM_001290750	59044	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	1.325	1.312	0.384	3.006	1.699	1.104	1.483	2.951	1.645	1.783	0.613	0.887	1.325	3.103	2.715	3.651	2.204	nan	nan	0.629	0.342	nan	nan	0.470	2.474
1620	chr10	93948568	93950100	+	0	NA	Intergenic	RLTR14|LTR|ERV1	14529	NR_029764	723908		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	4.493	1.082	0.405	2.532	1.155	0.445	2.953	3.581	2.276	2.085	nan	0.414	2.286	3.638	3.025	4.483	3.492	3.570	nan	0.453	0.388	nan	0.517	0.129	3.493
14702	chr8	123407201	123410646	+	0	NA	3' UTR (NM_008559, exon 1 of 1)	3' UTR (NM_008559, exon 1 of 1)	1841	NM_008559	17199	Mm.324942	NM_008559	ENSMUSG00000074037	Mc1r	Mcr1|Mshra|Tob|e	melanocortin 1 receptor	protein-coding	2.750	nan	0.850	7.656	1.654	1.177	nan	nan	1.908	1.846	0.835	0.671	0.666	1.422	nan	2.245	1.242	4.141	nan	0.857	0.820	nan	0.356	nan	nan
2241	chr11	57823248	57825882	+	0	NA	Intergenic	Intergenic	7582	NM_008213	15110	Mm.4746	NM_008213	ENSMUSG00000037335	Hand1	Ehand1|Hxt|Th1|Thing1|bHLHa27|eHAND	heart and neural crest derivatives expressed transcript 1	protein-coding	7.069	8.240	3.088	6.226	5.283	4.788	4.632	5.977	4.515	5.926	4.248	2.809	4.131	6.508	5.776	5.615	4.973	5.337	nan	3.790	3.457	3.690	4.177	3.333	6.906
13042	chr7	28011607	28021275	+	0	NA	Intergenic	Intergenic	-2326	NM_001254951	100043772	Mm.129275	NM_001100456	ENSMUSG00000096916	Zfp850	C130069I09Rik|Gm4636	zinc finger protein 850	protein-coding	5.271	4.059	1.791	6.076	7.638	6.396	5.323	7.901	4.244	5.485	4.690	2.724	5.126	7.109	5.101	5.524	4.587	5.663	2.806	2.320	2.133	2.867	2.761	2.808	6.208
5914	chr16	23237398	23241547	+	0	NA	intron (NM_001252505, intron 1 of 7)	B1_Mus1|SINE|Alu	13451	NM_001252505	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	5.577	3.841	2.922	2.987	3.518	1.845	7.677	5.244	3.292	4.463	3.240	1.544	8.138	7.145	4.456	6.518	5.258	3.514	0.901	1.334	0.894	1.125	nan	0.897	7.928
14438	chr8	89402249	89409242	+	0	NA	Intergenic	Intergenic	-361583	NM_021390	58198	Mm.214361	NM_021390	ENSMUSG00000031665	Sall1	Msal-3	sal-like 1 (Drosophila)	protein-coding	9.445	6.494	2.733	6.253	5.856	4.401	3.015	5.337	nan	6.931	3.835	1.976	3.161	4.636	4.513	7.378	4.808	6.406	nan	2.391	2.323	3.322	1.738	2.127	9.373
15740	chrX	70819548	70823502	+	0	NA	Intergenic	Intergenic	-228731	NM_001256048	333639	Mm.371730	NM_001081354	ENSMUSG00000059401	Mamld1	G630014P10Rik	mastermind-like domain containing 1	protein-coding	3.592	0.476	0.254	2.759	1.923	0.919	2.798	4.173	2.573	3.995	1.319	0.709	4.209	5.088	4.683	4.942	2.187	4.229	0.511	0.358	0.210	0.453	0.220	0.071	3.520
6466	chr17	28101248	28109434	+	0	NA	Intergenic	B4A|SINE|B4	-24702	NM_001085555	21463	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	5.055	1.351	0.509	6.986	3.844	2.954	2.551	3.828	4.224	5.058	1.099	1.583	3.063	5.444	4.123	5.157	2.036	5.682	0.727	0.828	0.787	0.693	0.731	0.630	5.311
6589	chr17	35322602	35325811	+	0	NA	3' UTR (NM_010390, exon 8 of 8)	3' UTR (NM_010390, exon 8 of 8)	3648	NM_010390	15006	Mm.466882	NM_010390	ENSMUSG00000079507	H2-Q1	H-2Q1|Q1|Q1b|Q1d|Q1k|Qa-1|Qa1|Qed-1	histocompatibility 2, Q region locus 1	protein-coding	6.830	12.516	11.443	3.008	6.317	4.265	4.555	2.720	2.846	3.642	3.636	1.892	1.942	4.956	2.264	2.540	3.131	1.896	2.239	4.820	4.313	1.077	4.207	3.446	3.002
7456	chr19	3653822	3656710	+	0	NA	intron (NM_008513, intron 2 of 22)	intron (NM_008513, intron 2 of 22)	31298	NM_008513	16973	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	3.569	1.099	0.483	3.961	1.681	0.486	3.989	7.294	2.433	3.071	2.011	1.608	2.432	4.135	3.925	4.534	3.325	3.922	0.817	1.206	0.942	1.903	0.810	1.081	5.824
6142	chr16	57685255	57690955	+	0	NA	intron (NM_007739, intron 1 of 3)	intron (NM_007739, intron 1 of 3)	66632	NM_007739	12837	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding	0.948	0.527	0.481	0.801	0.861	0.398	0.951	1.130	1.146	0.753	0.627	0.970	0.905	0.732	1.128	nan	0.997	0.915	nan	3.588	1.518	5.351	5.147	3.251	0.861
11100	chr5	30180166	30181562	+	0	NA	intron (NM_001289799, intron 14 of 15)	intron (NM_001289799, intron 14 of 15)	10125	NR_035486	100316709		NR_035486	ENSMUSG00000088113	Mir1960	mir-1960|mmu-mir-1960	microRNA 1960	ncRNA	3.544	1.268	0.596	2.286	1.762	0.668	2.593	3.431	3.135	3.839	3.337	1.529	2.919	4.189	3.006	2.578	1.562	3.609	0.884	0.870	0.351	1.316	0.205	0.361	1.788
929	chr1	181475749	181484490	+	0	NA	Intergenic	Intergenic	31332	NM_207280	403180	Mm.220754	NM_207280	ENSMUSG00000050625	Ccdc121	6530421E24Rik|Gm755	coiled-coil domain containing 121	protein-coding	5.594	11.183	5.987	4.898	3.095	1.394	2.565	4.110	3.732	3.988	1.774	2.111	4.403	4.839	4.222	6.225	4.969	4.696	1.905	1.407	1.045	2.449	1.435	1.105	4.430
2370	chr11	69392276	69395550	+	0	NA	intron (NM_001045525, intron 3 of 3)	intron (NM_001045525, intron 3 of 3)	1433	NM_001045525	327951	Mm.415669	NM_001045525	ENSMUSG00000044795	Cyb5d1	Gm740	cytochrome b5 domain containing 1	protein-coding	10.258	12.701	5.588	9.919	4.756	2.287	6.863	8.616	6.665	7.703	7.992	4.474	8.293	10.844	10.701	11.660	7.864	8.654	6.323	4.763	2.637	7.987	nan	3.414	10.916
7825	chr19	46469266	46470838	+	0	NA	intron (NM_001025391, intron 8 of 11)	RMER10B|LTR|ERVL	-31596	NM_053100	93679	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	5.886	10.087	3.364	7.070	2.678	0.957	4.871	6.078	3.009	4.953	4.620	2.586	3.927	5.900	6.574	7.784	5.842	5.663	1.814	1.946	0.607	4.303	1.829	1.080	10.691
14127	chr8	34913154	34919639	+	0	NA	intron (NM_175091, intron 3 of 26)	intron (NM_175091, intron 3 of 26)	49294	NM_175091	21951	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	4.850	1.446	0.709	4.142	1.663	0.912	3.259	7.351	3.439	4.131	3.602	3.920	5.415	5.171	5.837	6.323	3.504	5.421	0.836	0.604	0.588	1.099	0.873	0.615	7.856
5199	chr15	58200882	58203274	+	0	NA	intron (NM_026346, intron 4 of 8)	intron (NM_026346, intron 4 of 8)	12814	NM_026346	67731	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	1.103	1.545	2.156	nan	0.568	0.410	nan	4.567	nan	nan	1.532	1.936	0.975	0.504	1.202	nan	1.601	0.764	4.393	5.790	4.820	3.156	7.674	7.602	0.549
10890	chr4	148352281	148355127	+	0	NA	Intergenic	ORR1G|LTR|ERVL-MaLR	-65739	NM_001083342	242748	Mm.33873	NM_001083342	ENSMUSG00000041544	Ptchd2	Disp3|G630052C06Rik|RNDEu-2	patched domain containing 2	protein-coding	2.026	0.891	0.276	1.716	1.715	0.817	4.285	1.295	0.697	0.949	0.489	0.178	3.660	5.457	4.428	1.623	0.894	1.589	1.766	1.163	0.528	3.622	1.678	1.243	3.331
13165	chr7	52119798	52126013	+	0	NA	Intergenic	Intergenic	-107189	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	4.947	2.675	0.620	5.866	1.989	1.161	4.981	7.776	2.660	7.514	2.931	1.679	4.939	6.361	5.785	7.284	3.983	6.135	2.388	1.357	1.758	2.723	1.511	1.647	8.916
2554	chr11	83989946	83996922	+	0	NA	intron (NM_194341, intron 9 of 19)	MTC-int|LTR|ERVL-MaLR	29003	NM_194341	217030	Mm.82680	NM_194341	ENSMUSG00000034940	Synrg	Ap1gbp1|SYNG	synergin, gamma	protein-coding	5.774	2.646	1.304	4.131	4.976	2.674	4.070	5.003	3.727	6.147	3.853	1.963	4.307	7.493	5.226	6.938	5.418	6.456	2.492	1.786	1.638	nan	2.103	1.699	5.167
9544	chr3	95732654	95734554	+	0	NA	TTS (NM_007899)	TTS (NM_007899)	1369	NR_105981	102466787		NR_105981	ENSMUSG00000098737	Mir7014	Gm27837|mmu-mir-7014	microRNA 7014	ncRNA	6.975	22.258	6.908	11.284	5.572	2.838	6.230	6.704	5.633	11.262	nan	4.300	6.713	8.929	9.143	9.031	6.843	9.880	6.508	4.303	3.029	7.619	6.935	6.122	16.687
15020	chr9	44380479	44384556	+	0	NA	exon (NM_021395, exon 8 of 26)	exon (NM_021395, exon 8 of 26)	3027	NM_021395	12282	Mm.116721	NM_021395	ENSMUSG00000032115	Hyou1	AI415631|CBP-140|Cab140|Grp170|Orp150	hypoxia up-regulated 1	protein-coding	1.034	8.633	7.317	0.946	0.957	0.945	0.559	0.837	1.420	0.857	0.673	0.399	0.566	0.518	nan	nan	0.830	1.194	1.134	1.220	1.939	nan	1.095	1.212	nan
13325	chr7	82600474	82602756	+	0	NA	intron (NM_001190374, intron 25 of 29)	intron (NM_001190374, intron 25 of 29)	46913	NM_177894	330577	Mm.222812	NM_177894	ENSMUSG00000038570	Saxo2	1700129I04Rik|D030069K18|Fam154b	stabilizer of axonemal microtubules 2	protein-coding	6.884	8.197	2.813	9.427	4.814	3.160	4.993	8.169	5.097	11.942	3.907	2.583	8.332	8.308	7.533	7.566	4.619	8.872	2.526	1.929	1.782	3.616	2.438	3.311	12.821
1538	chr10	82448189	82449929	+	0	NA	Intergenic	Intergenic	43559	NM_001255990	432480	Mm.280394	NM_001255990	ENSMUSG00000094186	Gm1553	Lcrn	predicted gene 1553	protein-coding	4.591	8.687	2.935	6.017	1.596	1.317	1.581	1.162	2.153	4.673	4.062	0.920	1.428	2.016	2.953	2.414	1.736	2.790	5.453	3.011	3.743	7.194	4.053	4.893	7.508
1583	chr10	89205516	89218514	+	0	NA	intron (NR_102339, intron 1 of 26)	(TCC)n|Simple_repeat|Simple_repeat	45775	NM_001277188	320091	Mm.236464	NM_178773	ENSMUSG00000035189	Ano4	A330096O15Rik|Gm65|Tmem16d	anoctamin 4	protein-coding	6.175	3.202	1.770	5.271	5.321	4.277	5.274	5.122	4.637	5.732	2.715	1.986	5.901	6.899	5.857	6.567	6.867	5.809	1.177	1.281	1.203	nan	nan	1.045	6.311
8351	chr2	72821404	72823064	+	0	NA	Intergenic	L1_Mur3|LINE|L1	-8517	NR_102349	76218	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	3.536	1.427	0.922	2.880	1.509	0.773	2.635	4.489	2.252	2.093	4.492	2.021	3.507	3.045	2.575	4.609	6.033	3.014	0.727	1.000	0.599	0.990	0.485	0.626	3.687
5740	chr15	103140403	103141661	+	0	NA	intron (NR_045743, intron 3 of 6)	B3|SINE|B2	5796	NR_045743	432989	Mm.383979	NR_045743	ENSMUSG00000097003	D930007P13Rik	-	Riken cDNA D930007P13 gene	ncRNA	4.959	2.183	1.359	1.268	2.312	1.242	4.332	4.700	nan	1.864	2.374	1.225	4.332	4.211	2.852	2.285	3.803	2.251	0.973	1.135	1.405	0.861	0.772	0.731	1.976
7289	chr18	60869847	60901568	+	0	NA	Intergenic	Intergenic	-26533	NM_001038499	545260	Mm.20147	NM_001038499	ENSMUSG00000036412	Arsi	BC020108	arylsulfatase i	protein-coding	8.390	nan	0.978	nan	5.611	3.257	5.152	7.030	4.169	5.895	4.666	2.097	nan	9.179	5.111	6.335	4.259	nan	nan	1.784	1.555	nan	2.161	1.582	nan
12850	chr6	145882109	145884487	+	0	NA	Intergenic	L1MB7|LINE|L1	-17878	NM_024469	79362	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	nan	1.971	0.617	nan	1.314	0.461	1.656	nan	1.780	nan	5.306	1.169	nan	1.610	3.974	nan	1.505	3.238	9.436	4.084	4.136	12.048	6.636	5.092	4.831
8747	chr2	145691293	145692374	+	0	NA	Intergenic	Intergenic	-9362	NR_033220	408057	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	4.455	0.480	0.292	3.691	4.625	3.574	2.685	3.181	5.074	4.426	4.327	1.085	2.697	4.572	3.135	3.565	2.887	4.420	nan	1.340	0.235	0.808	0.482	0.352	3.167
5158	chr15	41661471	41664886	+	0	NA	intron (NM_001130166, intron 3 of 16)	B4|SINE|B4	-125856	NM_001130165	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	6.061	7.608	2.917	4.466	2.029	0.746	3.724	4.843	4.436	3.435	1.211	1.370	6.632	3.432	4.897	5.461	4.039	7.255	5.859	3.955	1.693	6.636	3.520	1.797	nan
14445	chr8	90785053	90799436	+	0	NA	Intergenic	RLTR35B_MM|LTR|ERVL	-36591	NM_177224	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	4.040	1.053	0.525	3.888	3.639	2.711	2.740	1.100	nan	5.598	1.542	0.843	5.581	6.026	4.254	7.035	6.032	4.599	nan	1.374	1.612	2.448	0.722	0.800	6.986
5723	chr15	102161756	102162862	+	0	NA	intron (NM_146064, intron 13 of 14)	intron (NM_146064, intron 13 of 14)	11734	NM_146064	223920	Mm.358862	NM_146064	ENSMUSG00000023045	Soat2	ACAT2|D15Wsu97e	sterol O-acyltransferase 2	protein-coding	4.881	6.806	1.857	5.371	2.011	1.584	4.644	7.520	2.794	3.796	2.723	1.808	4.557	6.232	7.168	6.163	4.885	4.681	5.168	2.504	0.871	4.472	2.777	2.082	7.749
15029	chr9	44895889	44897565	+	0	NA	Intergenic	Intergenic	-15453	NM_001081049	214162	Mm.2389	NM_001081049	ENSMUSG00000002028	Kmt2a	6430520K01|ALL-1|All1|Cxxc7|HRX|HTRX1|Mll|Mll1|mKIAA4050	lysine (K)-specific methyltransferase 2A	protein-coding	3.087	0.749	0.368	2.347	2.439	1.812	2.568	4.840	4.210	3.304	4.296	3.188	1.888	3.095	3.889	2.986	1.016	5.493	0.556	0.298	0.242	nan	0.604	0.195	1.916
8782	chr2	148228724	148234420	+	0	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	-163805	NM_009219	20608	Mm.35324	NM_009219	ENSMUSG00000037014	Sstr4	Smstr4|sst4	somatostatin receptor 4	protein-coding	4.283	1.785	0.690	8.685	2.068	0.996	1.124	2.969	3.305	3.437	1.298	0.949	1.250	2.445	2.751	3.317	1.394	5.882	nan	0.922	0.642	2.454	0.464	0.469	3.921
12538	chr6	99469836	99474326	+	0	NA	intron (NM_001347345, intron 1 of 19)	intron (NM_001347345, intron 1 of 19)	-36736	NM_053202	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	10.399	6.155	2.571	11.041	5.650	3.548	17.136	12.716	5.180	13.134	8.277	5.523	9.231	12.678	12.255	13.784	12.753	8.867	8.326	5.986	6.357	9.342	8.447	10.022	16.338
6272	chr16	96348523	96349316	+	0	NA	Intergenic	RMER21A|LTR|ERV1	-12838	NM_001177887	72058	Mm.119714	NM_028078	ENSMUSG00000000159	Igsf5	2010003D20Rik|JCAM|Jam4	immunoglobulin superfamily, member 5	protein-coding	13.139	17.403	5.110	14.168	6.896	6.450	12.972	13.790	6.759	23.037	10.358	4.793	12.540	14.561	12.731	17.508	9.905	12.272	5.802	2.161	4.812	5.573	1.880	6.204	28.443
7399	chr18	75622845	75626211	+	0	NA	intron (NM_201354, intron 2 of 11)	L1MD3|LINE|L1	73168	NM_201354	269037	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	4.288	4.866	1.126	3.161	1.732	0.960	6.538	5.802	2.473	3.406	1.853	1.619	7.218	6.021	4.531	5.128	3.232	4.000	1.129	nan	0.669	1.314	0.906	0.467	4.156
1055	chr1	195132291	195146845	+	0	NA	3' UTR (NM_007758, exon 19 of 19)	3' UTR (NM_007758, exon 19 of 19)	-7998	NM_013499	12946	Mm.301652	NM_013499	ENSMUSG00000016481	Cr1l	Crry|Mcp|mCRY	complement component (3b/4b) receptor 1-like	protein-coding	4.678	1.161	0.528	2.149	2.000	0.975	4.176	3.009	3.025	3.496	1.355	0.890	5.324	5.484	4.513	nan	5.592	3.478	1.032	0.976	0.677	1.921	nan	0.653	5.882
12657	chr6	119797399	119798456	+	0	NA	intron (NR_104484, intron 3 of 20)	PB1D11|SINE|Alu	50223	NM_053204	111173	Mm.288860	NM_053204	ENSMUSG00000030172	Erc1	4930404L01Rik|5033405M01Rik|9630025C19Rik|B430107L16Rik|CAST2|ELKS|Elks1|RAB6IP2A|RAB6IP2B|Rab6ip2|mKIAA1081	ELKS/RAB6-interacting/CAST family member 1	protein-coding	8.043	10.303	4.223	11.920	8.779	4.727	10.260	9.612	4.874	14.978	7.745	6.495	6.960	11.944	9.408	13.313	9.665	9.584	8.474	4.378	6.642	8.352	5.828	9.739	15.955
3610	chr12	88496986	88500017	+	0	NA	Intergenic	ORR1C1|LTR|ERVL-MaLR	-121178	NR_045888	71818	Mm.490789	NR_045888		3200001D21Rik	-	RIKEN cDNA 3200001D21 gene	ncRNA	3.168	0.577	0.321	3.341	2.359	1.050	4.653	5.423	2.722	4.361	1.511	0.939	6.720	7.939	4.397	7.705	4.708	4.287	1.029	0.674	0.570	0.729	0.748	0.568	8.974
4050	chr13	44223443	44226648	+	0	NA	Intergenic	Intergenic	-8558	NR_045088	100503592	Mm.184925	NR_045088		A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	5.126	0.653	0.634	nan	3.012	1.092	3.956	3.340	4.191	5.879	0.935	0.678	4.985	6.925	4.528	4.493	4.111	nan	1.081	nan	0.229	0.990	0.672	0.390	4.916
6695	chr17	47609078	47610463	+	0	NA	intron (NM_016859, intron 1 of 6)	PB1D11|SINE|Alu	1722	NM_016859	53414	Mm.472101	NM_016859	ENSMUSG00000023988	Bysl	Bys|Enp1	bystin-like	protein-coding	1.712	0.653	0.287	1.894	3.031	1.160	3.233	3.775	1.546	1.955	4.252	1.764	1.608	3.881	3.182	3.116	3.482	2.560	1.380	0.808	0.531	0.922	0.786	0.085	3.083
13860	chr7	146097354	146101554	+	0	NA	Intergenic	Intergenic	784619	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	9.876	nan	1.157	6.788	12.749	8.692	10.602	18.997	nan	9.567	3.574	4.165	11.893	14.484	8.996	9.296	8.302	8.460	5.607	3.279	3.439	6.368	nan	4.460	10.400
2447	chr11	74450927	74467073	+	0	NA	intron (NM_001015046, intron 3 of 24)	intron (NM_001015046, intron 3 of 24)	94329	NM_001011851	258153	Mm.376124	NM_001011851	ENSMUSG00000058275	Olfr412	MOR127-5P	olfactory receptor 412	protein-coding	4.585	1.658	0.765	4.114	2.534	1.785	4.648	6.027	3.258	5.334	3.288	1.927	4.852	6.787	nan	nan	3.990	nan	1.720	1.125	nan	2.001	1.096	1.278	6.071
12308	chr6	71780386	71782096	+	0	NA	intron (NM_178608, intron 5 of 6)	B3A|SINE|B2	42543	NM_025430	66223	Mm.28579	NM_025430	ENSMUSG00000052962	Mrpl35	1110066C01Rik	mitochondrial ribosomal protein L35	protein-coding	7.092	8.266	3.884	7.278	4.299	2.865	7.799	8.270	3.022	6.173	4.530	3.627	7.402	8.709	7.930	9.938	7.598	5.181	3.748	2.776	3.669	4.167	2.585	3.850	7.938
11861	chr5	138544288	138546895	+	0	NA	Intergenic	L1_Mus1|LINE|L1	19103	NM_029693	76658	Mm.73235	NM_029693	ENSMUSG00000029526	1700123K08Rik	-	RIKEN cDNA 1700123K08 gene	protein-coding	3.035	0.422	0.303	1.235	0.611	0.549	3.626	2.675	0.849	0.789	0.416	0.689	2.759	2.579	3.646	3.585	2.473	3.189	0.697	0.332	0.282	0.967	nan	0.105	3.093
8977	chr2	165383860	165385930	+	0	NA	intron (NM_178411, intron 2 of 4)	intron (NM_178411, intron 2 of 4)	3364	NM_178411	228876	Mm.26316	NM_178411	ENSMUSG00000017667	Zfp334	D2Ertd535e	zinc finger protein 334	protein-coding	5.858	0.580	0.472	1.051	2.674	1.367	4.411	7.330	1.965	2.763	2.260	2.059	4.940	5.582	3.370	4.457	6.209	nan	1.729	1.080	1.141	0.545	1.947	2.484	5.188
15788	chrX	100687370	100689357	+	0	NA	intron (NM_008446, intron 12 of 29)	intron (NM_008446, intron 12 of 29)	-41484	NM_023608	71584	Mm.283495	NM_023608	ENSMUSG00000019359	Gdpd2	9130017L10Rik|Gde3|Obdpf	glycerophosphodiester phosphodiesterase domain containing 2	protein-coding	6.016	5.659	3.964	4.118	3.588	2.163	5.084	7.534	3.964	7.236	4.226	2.863	5.275	6.198	5.234	6.050	9.730	5.028	3.924	4.230	5.398	6.246	4.063	4.266	6.145
3140	chr11	121411229	121414572	+	0	NA	Intergenic	B3A|SINE|B2	-8473	NM_181420	238024	Mm.117394	NM_181420	ENSMUSG00000039253	Fn3krp	FN3K-RP	fructosamine 3 kinase related protein	protein-coding	3.223	5.104	1.587	3.316	1.683	0.622	nan	4.555	2.664	nan	8.167	3.547	2.768	3.288	2.921	4.159	2.720	3.332	3.149	nan	0.856	3.939	1.775	0.790	3.275
12829	chr6	142997135	142999476	+	0	NA	Intergenic	Intergenic	-33853	NM_011374	20449	Mm.260838	NM_011374	ENSMUSG00000030283	St8sia1	9330109E03Rik|GD3S|Sia-T|Siat8|Siat8a	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding	6.722	1.045	0.735	2.846	2.669	1.836	5.807	5.801	4.868	5.003	1.527	0.181	5.875	7.569	5.836	8.326	7.072	5.385	nan	0.760	0.709	1.082	1.030	0.783	nan
6164	chr16	78451418	78452669	+	0	NA	Intergenic	Intergenic	-74862	NM_001297747	12228	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	3.732	0.589	0.523	2.050	2.622	0.519	1.701	5.332	2.355	3.985	0.488	0.586	2.481	3.983	2.485	2.808	2.952	2.214	nan	1.333	0.160	0.660	0.634	0.202	3.928
11880	chr5	139932757	139936331	+	0	NA	intron (NM_175522, intron 1 of 1)	intron (NM_175522, intron 1 of 1)	26601	NM_175522	243312	Mm.237102	NM_175522	ENSMUSG00000048988	Elfn1	A930017N06Rik|AI197272|Ppp1r28	leucine rich repeat and fibronectin type III, extracellular 1	protein-coding	2.712	1.096	0.933	2.658	3.725	2.793	3.014	1.972	3.246	3.060	1.002	1.676	2.795	3.185	3.209	4.624	4.044	3.828	4.796	4.819	4.235	2.394	6.645	6.354	2.267
14033	chr8	12871014	12884858	+	0	NA	Intergenic	Intergenic	-37957	NM_178076	17207	Mm.334413	NM_178076	ENSMUSG00000031442	Mcf2l	C130040G20Rik|Dbs|Ost|mKIAA0362	mcf.2 transforming sequence-like	protein-coding	2.669	1.179	0.449	2.205	1.276	0.586	3.114	4.856	1.828	3.279	2.159	0.576	5.687	4.334	4.431	4.374	3.575	3.150	2.714	1.846	2.042	5.724	1.739	1.637	6.561
4939	chr14	105768781	105770271	+	0	NA	Intergenic	Intergenic	127293	NM_011897	24064	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty homolog 2 (Drosophila)	protein-coding	3.511	0.553	0.309	2.238	1.508	0.489	2.845	4.673	2.583	2.923	4.827	2.671	3.112	3.837	4.197	3.881	2.931	3.402	2.718	0.908	0.187	1.722	1.114	0.574	1.766
8182	chr2	35186322	35195820	+	0	NA	intron (NM_026697, intron 3 of 7)	intron (NM_026697, intron 3 of 7)	10049	NM_026697	68365	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	5.229	2.518	1.313	4.048	3.319	1.868	3.572	6.663	3.784	nan	3.570	3.633	5.293	5.968	3.961	4.775	2.786	4.687	1.456	1.139	0.849	1.484	0.859	0.895	4.796
4520	chr14	21905797	21907499	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-57738	NM_026965	69156	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	5.114	1.572	0.461	4.616	2.452	1.114	2.400	8.322	3.332	3.750	5.626	2.496	3.447	4.357	4.699	5.469	1.918	5.443	4.520	1.400	1.199	2.519	3.725	2.147	4.925
1917	chr11	4571224	4572805	+	0	NA	intron (NM_028860, intron 1 of 17)	intron (NM_028860, intron 1 of 17)	22801	NM_028860	74302	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	2.020	1.004	0.803	2.788	3.088	3.258	2.204	4.629	2.242	2.408	2.255	1.267	1.569	3.616	3.343	2.491	1.904	2.932	3.541	nan	1.131	2.723	3.292	3.255	2.936
2993	chr11	115946822	115950725	+	0	NA	intron (NM_020483, intron 3 of 10)	intron (NM_020483, intron 3 of 10)	15114	NM_020483	57230	Mm.267810	NM_020483	ENSMUSG00000020755	Sap30bp	2700016D05Rik|Hcngp	SAP30 binding protein	protein-coding	7.240	5.375	3.145	4.984	3.976	2.028	4.964	6.663	4.484	nan	3.977	2.474	6.057	7.529	5.557	6.976	5.940	nan	2.978	nan	3.128	3.502	3.477	2.591	5.396
11148	chr5	33992043	33994603	+	0	NA	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-2661	NM_001001985	269642	Mm.274610	NM_001001985	ENSMUSG00000048142	Nat8l	1110038O08Rik|Shati	N-acetyltransferase 8-like	protein-coding	3.696	5.291	3.179	2.892	3.079	1.631	2.704	3.110	2.657	2.227	2.573	1.799	2.065	3.299	nan	3.566	2.900	nan	4.291	4.228	2.713	4.525	5.581	3.638	2.853
14869	chr9	14520171	14525124	+	0	NA	Intergenic	Intergenic	22028	NM_023153	66070	Mm.245938	NM_023153	ENSMUSG00000004096	Cwc15	0610040D20Rik|2900052N06Rik|Ed1|c11orf5|mED1	CWC15 spliceosome-associated protein	protein-coding	4.986	2.030	0.894	4.349	1.625	0.692	3.043	4.206	4.700	5.920	3.087	1.611	5.905	6.423	5.209	5.872	4.723	5.674	3.778	0.988	0.580	1.995	1.247	0.934	7.283
8282	chr2	60634525	60638076	+	0	NA	intron (NM_021359, intron 7 of 14)	intron (NM_021359, intron 7 of 14)	37393	NM_021359	16420	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	6.275	1.285	0.588	4.913	3.707	2.215	3.646	7.590	4.030	5.614	1.434	1.019	4.246	6.680	5.219	7.186	7.198	6.516	1.464	1.039	1.038	2.764	0.551	0.754	5.734
13343	chr7	86292097	86294622	+	0	NA	Intergenic	PB1D10|SINE|Alu	13752	NM_001011866	258196	Mm.389956	NM_001011866	ENSMUSG00000054054	Olfr309	MOR251-4P	olfactory receptor 309	protein-coding	5.146	4.187	1.481	5.352	4.993	2.828	6.064	7.105	3.601	4.745	3.344	2.756	5.785	6.048	4.242	5.084	nan	5.528	1.849	1.122	1.387	nan	1.629	1.414	4.961
1713	chr10	110735300	110737098	+	0	NA	Intergenic	Intergenic	-9266	NM_178609	52679	Mm.11747	NM_178609	ENSMUSG00000020185	E2f7	A630014C11Rik|D10Ertd739e	E2F transcription factor 7	protein-coding	6.479	9.564	2.367	4.885	1.274	0.491	4.323	5.614	nan	3.837	2.081	1.031	4.766	5.082	7.327	6.091	4.180	6.073	2.860	1.562	1.156	3.016	1.558	1.401	7.403
12718	chr6	127479054	127480597	+	0	NA	intron (NM_001346513, intron 4 of 5)	MTE2a|LTR|ERVL-MaLR	26102	NM_181402	101187	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	4.162	nan	0.256	1.675	1.592	0.930	5.532	4.344	1.346	3.098	0.416	0.186	4.995	6.183	5.408	5.071	4.891	1.952	0.908	0.755	0.369	0.976	0.608	0.183	5.140
8459	chr2	92806067	92809117	+	0	NA	Intergenic	Intergenic	-107509	NM_030725	80976	Mm.33490	NM_030725	ENSMUSG00000027220	Syt13	5730409J20Rik|AI549909|mKIAA1427	synaptotagmin XIII	protein-coding	4.099	0.833	0.430	2.897	0.459	0.407	2.913	2.671	1.494	2.968	0.656	0.409	3.866	4.304	2.829	6.306	4.351	4.871	0.459	0.734	0.364	0.511	0.629	0.407	7.844
2420	chr11	72247789	72249243	+	0	NA	intron (NM_001004148, intron 9 of 11)	MTB|LTR|ERVL-MaLR	18088	NM_001004148	237831	Mm.340778	NM_001004148	ENSMUSG00000020805	Slc13a5	Indy|NaC2/NaCT|Nact|mINDY	solute carrier family 13 (sodium-dependent citrate transporter), member 5	protein-coding	3.740	1.692	1.324	1.126	3.054	1.978	5.810	9.315	2.147	2.130	2.700	1.702	6.477	5.730	3.144	5.067	3.713	2.261	1.309	2.022	1.411	1.271	nan	1.806	2.461
3722	chr12	111309521	111313865	+	0	NA	intron (NM_183016, intron 20 of 36)	intron (NM_183016, intron 20 of 36)	40597	NM_033603	93835	Mm.197639	NM_033603	ENSMUSG00000021278	Amn	-	amnionless	protein-coding	3.588	0.271	0.365	nan	2.711	1.614	2.969	nan	nan	2.558	0.267	0.480	2.044	2.488	2.773	4.907	5.475	2.910	0.434	0.444	0.310	0.334	0.532	0.265	3.969
6364	chr17	17736315	17740211	+	0	NA	Intergenic	Lx9|LINE|L1	34322	NM_001104539	626942	Mm.404019	NM_001104539	ENSMUSG00000092120	Vmn2r90	EG626942	vomeronasal 2, receptor 90	protein-coding	5.384	8.319	5.704	3.421	5.158	2.975	3.004	3.595	3.708	3.816	1.775	1.816	3.192	4.841	2.447	3.085	3.665	3.256	1.119	2.036	1.213	0.929	0.866	0.950	1.867
14185	chr8	42237424	42240474	+	0	NA	Intergenic	Intergenic	411682	NR_045497	69966	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA	1.239	0.468	0.391	0.682	0.753	0.562	1.263	4.527	0.897	1.342	0.677	1.221	1.420	1.280	1.062	1.555	1.633	0.650	0.493	0.673	0.268	0.868	0.215	0.231	nan
7066	chr18	23196783	23199484	+	0	NA	Intergenic	Intergenic	-19463	NR_110491	665797	Mm.328158	NR_110491		Gm7788	EG665797	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.240	0.490	0.144	0.159	0.177		0.193	0.168	0.166	0.362	0.153	0.060	0.105	0.205	0.130	nan	0.289	0.218	7.128	3.900	3.663	8.332	5.050	4.785	0.366
11472	chr5	99240761	99242115	+	0	NA	exon (NM_181318, exon 3 of 14)	exon (NM_181318, exon 3 of 14)	11489	NM_181318	320292	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	4.133	0.342	0.135	2.490	2.568	1.076	5.308	2.860	3.329	4.086	1.193	0.808	5.146	5.625	4.900	5.656	6.673	4.402	1.110	0.741	0.157	0.206	0.362	0.595	2.999
4450	chr14	8656781	8659999	+	0	NA	intron (NM_028934, intron 3 of 15)	RLTR10C|LTR|ERVK	7900	NM_028934	74430	Mm.271901	NM_028934	ENSMUSG00000021747	4930452B06Rik	4933406L09Rik|AI854000	RIKEN cDNA 4930452B06 gene	protein-coding	5.910	1.993	0.770	3.812	3.008	1.131	4.733	8.934	4.647	4.584	3.776	2.762	4.449	5.601	5.789	8.006	3.651	6.476	1.464	1.144	0.305	1.711	1.405	0.800	8.120
900	chr1	174439438	174441961	+	0	NA	Intergenic	Intergenic	-7926	NM_207694	546747	Mm.380253	NM_207694	ENSMUSG00000066671	Olfr220	EG546747|MOR103-13P|MOR103-17|Olfr220-ps1|Olfr413-ps1	olfactory receptor 220	protein-coding	9.606	2.080	0.514	4.634	3.654	1.701	6.156	6.541	3.957	5.992	1.545	2.026	6.335	7.847	5.778	10.504	8.556	5.909	4.375	4.489	2.082	4.879	4.502	2.883	6.502
9888	chr3	153445141	153447373	+	0	NA	intron (NM_011372, intron 2 of 4)	C-rich|Low_complexity|Low_complexity	-147608	NR_126464	75489	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	3.020	0.687	0.118	1.504	0.850	0.576	1.952	3.342	1.921	2.363	0.402	0.353	3.788	2.846	3.061	4.386	5.059	4.136	0.995	0.542	0.275	1.300	0.530	0.255	5.743
318	chr1	75213836	75216925	+	0	NA	non-coding (NR_102731, exon 8 of 8)	non-coding (NR_102731, exon 8 of 8)	3914	NM_001313723	22145	Mm.1155	NM_009447	ENSMUSG00000026202	Tuba4a	M[a]4|Tuba4	tubulin, alpha 4A	protein-coding	9.971	7.658	2.350	7.609	3.172	2.095	9.570	8.984	4.989	7.771	6.781	3.778	9.968	10.397	9.509	15.293	7.408	9.618	nan	nan	2.872	5.576	nan	2.819	13.540
13570	chr7	117151803	117153167	+	0	NA	Intergenic	Intergenic	-228494	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	1.951	0.599	0.386	1.606	3.069	2.994	4.547	6.002	2.414	2.496	3.647	2.170	3.998	4.314	3.253	1.974	1.924	3.119	0.926	0.868	1.148	1.336	0.501	0.704	2.299
8823	chr2	152963492	152966434	+	0	NA	intron (NM_001083618, intron 1 of 14)	RLTR23|LTR|ERV1	2478	NM_001083618	74711	Mm.44746	NM_029064	ENSMUSG00000074673	Ttll9	1700016F23Rik|4930509O20Rik|AW046572	tubulin tyrosine ligase-like family, member 9	protein-coding	3.561	1.584	0.805	3.111	2.093	1.498	1.821	2.949	2.386	3.042	1.583	0.616	3.532	4.759	2.531	4.221	5.012	4.188	nan	0.548	0.763	0.880	0.355	0.387	5.045
9927	chr4	10714534	10718504	+	0	NA	intron (NR_045185, intron 4 of 4)	L1_Mus1|LINE|L1	81283	NR_045185	73624	Mm.67392	NR_045185	ENSMUSG00000086080	1700123O12Rik	-	RIKEN cDNA 1700123O12 gene	ncRNA	2.846	0.563	0.393	2.145	3.541	1.342	2.616	nan	2.524	3.493	0.379	0.253	2.294	5.629	2.560	2.625	2.048	4.605	1.263	nan	0.549	1.822	1.160	0.751	4.123
473	chr1	95549116	95552228	+	0	NA	Intergenic	Intergenic	116922	NM_009183	20452	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	nan	nan	0.513	0.459	0.452	0.475	1.964	5.455	3.633	1.834	2.538	4.300	1.636	1.128	1.155	nan	1.190	nan	nan	0.600	0.850	nan	1.458	1.147	nan
8685	chr2	132031565	132032829	+	0	NA	Intergenic	PB1D10|SINE|Alu	-2209	NM_175445	215653	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	2.466	0.644	0.431	0.733	3.955	5.084	2.935	8.032	2.493	1.600	1.269	2.216	3.750	3.953	2.774	4.034	2.697	3.087	1.556	0.679	0.564	0.489	0.479	0.887	2.851
7562	chr19	10278063	10279211	+	0	NA	intron (NM_198114, intron 1 of 19)	intron (NM_198114, intron 1 of 19)	26240	NM_198114	269060	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	13.050	18.613	6.399	12.040	8.683	1.995	11.504	12.238	7.084	8.615	8.160	5.062	9.572	12.388	11.496	12.044	9.067	10.242	4.631	5.097	3.304	8.129	6.491	4.644	17.467
12549	chr6	100772666	100781146	+	0	NA	intron (NM_198612, intron 3 of 6)	intron (NM_198612, intron 3 of 6)	-56732	NM_182939	232314	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	0.834	8.617	6.269	0.499	0.486	0.436	1.428	2.127	0.582	0.485	0.689	0.691	0.867	0.954	nan	nan	1.004	0.911	nan	nan	0.361	0.482	0.433	0.496	0.588
2572	chr11	86169294	86171784	+	0	NA	intron (NM_178309, intron 6 of 19)	intron (NM_178309, intron 6 of 19)	30654	NM_178309	237911	Mm.186143	NM_178309	ENSMUSG00000034329	Brip1	3110009N10Rik|8030460J03Rik|Bach1|FACJ|Fancj|OF	BRCA1 interacting protein C-terminal helicase 1	protein-coding	9.602	15.836	9.098	12.388	9.423	7.062	8.537	8.151	8.125	16.931	9.039	10.155	7.196	11.322	8.829	9.254	9.650	9.037	6.230	4.300	4.665	5.792	4.458	8.307	11.475
8734	chr2	143816249	143818331	+	0	NA	Intergenic	Intergenic	-28104	NR_040625	378775	Mm.441313	NR_040625	ENSMUSG00000087115	Pcsk2os2	9430032N09Rik|Gm12360|OTTMUSG00000006467	proprotein convertase subtilisin/kexin type 2, opposite strand 2	ncRNA	4.939	1.658	1.644	2.667	1.845	1.371	2.036	3.679	3.283	3.680	2.429	1.435	2.541	2.720	2.435	3.454	2.411	3.552	nan	1.164	1.159	1.749	1.018	1.331	4.602
15338	chr9	78038592	78042322	+	0	NA	Intergenic	ID_B1|SINE|B4	-11501	NM_008103	14531	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1 (Drosophila)	protein-coding	4.049	0.842	0.661	2.751	0.964	0.686	4.212	5.905	3.297	2.669	7.112	3.303	4.817	5.636	3.993	4.800	3.476	2.691	0.657	nan	0.744	0.900	0.724	0.549	nan
1774	chr10	117153672	117158665	+	0	NA	Intergenic	Intergenic	-7694	NM_177798	327826	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	8.093	3.673	3.565	2.824	5.556	5.151	2.826	4.466	3.704	3.686	3.091	2.524	2.531	4.580	2.452	3.574	3.918	nan	1.391	1.399	1.721	1.334	1.928	1.426	4.225
3888	chr13	23957605	23962057	+	0	NA	intron (NM_145399, intron 9 of 10)	intron (NM_145399, intron 9 of 10)	25369	NM_175658	319163	Mm.377876	NM_175658	ENSMUSG00000060081	Hist1h2aa	Th2a	histone cluster 1, H2aa	protein-coding	3.564	0.641	0.458	0.341	0.342	0.084	0.908	4.212	0.349	0.402	0.197	0.309	0.458	0.713	1.100	0.604	1.538	0.591	0.714	0.884	0.441	0.463	0.557	0.455	0.711
12405	chr6	87225397	87230765	+	0	NA	intron (NM_054041, intron 12 of 17)	(CGGG)n|Simple_repeat|Simple_repeat	107694	NM_054041	69538	Mm.232525	NM_054041	ENSMUSG00000033420	Antxr1	2310008J16Rik|2810405N18Rik|Antrx1|Tem8	anthrax toxin receptor 1	protein-coding	6.659	1.085	0.462	nan	2.093	0.608	10.530	6.645	3.862	3.878	4.345	2.850	9.107	8.761	9.351	12.313	7.257	6.661	nan	0.910	0.554	2.260	1.276	0.854	10.819
6469	chr17	28161040	28164375	+	0	NA	intron (NM_001004366, intron 8 of 21)	MT2B|LTR|ERVL	-14711	NM_172617	224656	Mm.267359	NM_172617	ENSMUSG00000024220	Zfp523	2810027J07|BC025615|Znf76	zinc finger protein 523	protein-coding	5.070	0.873	0.273	8.902	2.295	0.863	8.244	4.874	5.154	7.390	5.707	2.008	6.760	6.877	7.814	10.760	5.410	8.585	1.361	0.755	0.551	2.101	1.321	0.509	13.336
11365	chr5	77356387	77359267	+	0	NA	intron (NM_008048, intron 1 of 4)	intron (NM_008048, intron 1 of 4)	47343	NM_153798	231329	Mm.273217	NM_153798	ENSMUSG00000029250	Polr2b	Pol2rb|Rpb140|Rpb2	polymerase (RNA) II (DNA directed) polypeptide B	protein-coding	5.629	0.931	0.842	4.192	4.025	1.749	5.653	4.854	3.403	4.823	2.228	1.566	5.720	6.415	5.808	5.095	6.470	nan	2.299	2.200	2.060	3.340	2.759	2.193	6.237
12370	chr6	85280733	85284176	+	0	NA	intron (NM_178639, intron 6 of 13)	B4|SINE|B4	50968	NM_178639	94282	Mm.121485	NM_178639	ENSMUSG00000033720	Sfxn5	C230001H08Rik	sideroflexin 5	protein-coding	5.894	5.098	1.453	4.472	2.730	1.346	12.095	9.814	4.020	7.437	2.080	3.236	7.562	11.785	9.105	11.142	6.742	6.333	nan	1.462	1.484	2.773	1.398	1.251	10.302
4782	chr14	66354498	66356294	+	0	NA	intron (NM_001310522, intron 2 of 6)	intron (NM_001310522, intron 2 of 6)	11100	NM_019675	56471	Mm.35474	NM_019675	ENSMUSG00000022044	Stmn4	Lagl|R75359|RB3	stathmin-like 4	protein-coding	2.005	1.144	1.062	1.768	1.176	0.448	2.361	6.432	1.118	1.503	1.872	0.560	2.016	4.814	2.907	2.470	1.533	1.606	0.625	nan		0.775	0.381	0.122	2.746
15243	chr9	67440562	67442554	+	0	NA	intron (NM_001081242, intron 2 of 57)	C-rich|Low_complexity|Low_complexity	118145	NM_001081242	70549	Mm.33645	NM_027458	ENSMUSG00000052698	Tln2	5730421P04Rik|AI507121|AI787438|AL118320|mKIAA0320	talin 2	protein-coding	3.527	0.490	0.391	2.803	1.635	0.658	2.901	3.824	3.713	3.434	3.164	1.234	6.617	6.248	5.841	3.605	2.325	5.611	nan	0.782	0.643	0.770	0.185	0.275	6.539
6428	chr17	26534788	26541815	+	0	NA	Intergenic	Intergenic	-23211	NM_026170	67458	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0.374	0.891	0.291	0.575	0.120	0.069	0.684	0.494	0.454	0.388	0.359	0.326	0.234	0.534	0.730	nan	0.473	0.785	2.765	1.769	1.096	5.401	1.363	0.985	1.056
2063	chr11	32120762	32127381	+	0	NA	Intergenic	L1_Mur3|LINE|L1	-22843	NR_130637	104692	Mm.414035	NR_130637	ENSMUSG00000086386	Gm12108	BB052462|OTTMUSG00000005365	predicted gene 12108	ncRNA	5.236	5.833	1.353	9.111	2.134	1.334	6.836	7.290	4.702	7.565	4.589	2.431	6.283	7.618	7.175	9.014	3.592	7.617	2.382	1.107	1.064	2.782	1.489	1.303	9.751
6922	chr17	84765938	84769146	+	0	NA	intron (NM_028233, intron 11 of 37)	B1_Mur1|SINE|Alu	23244	NM_028233	72416	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	3.463	1.745	1.232	4.307	1.868	1.528	2.265	2.174	nan	2.788	1.475	1.930	2.693	2.751	2.417	2.827	3.689	4.573	1.147	2.806	1.628	2.659	0.759	0.742	3.628
3723	chr12	111392283	111395435	+	0	NA	Intergenic	Intergenic	-12950	NM_001101503	380787	Mm.125602	NM_001101503	ENSMUSG00000087075	A230065H16Rik	Gm898|Lbh2	RIKEN cDNA A230065H16 gene	protein-coding	2.429	0.350	0.093	nan	1.244	1.185	2.998	4.707	nan	nan	0.264	0.449	1.105	nan	2.015	4.049	3.007	2.414	1.116	1.496	0.938	3.738	0.713	0.663	2.184
11159	chr5	34868508	34871148	+	0	NA	intron (NM_010414, intron 40 of 66)	intron (NM_010414, intron 40 of 66)	-46087	NM_207277	403174	Mm.291225	NM_207277	ENSMUSG00000051246	Msantd1	A930005I04Rik|Gm144	Myb/SANT-like DNA-binding domain containing 1	protein-coding	6.348	6.373	2.721	5.369	2.969	2.127	2.821	2.462	2.838	4.051	6.104	2.464	2.547	5.159	nan	3.490	2.190	4.089	1.131	1.778	2.061	5.880	0.634	0.962	6.109
8040	chr2	26493647	26496736	+	0	NA	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	8631	NM_008714	18128	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	7.393	5.416	2.249	5.474	3.508	2.604	6.324	8.582	nan	4.620	4.968	2.534	6.815	7.635	6.866	8.094	6.137	6.156	2.072	2.006	2.778	3.591	1.983	2.007	9.227
13537	chr7	109370210	109375632	+	0	NA	intron (NM_054103, intron 1 of 13)	L1Md_F2|LINE|L1	66132	NM_054103	117229	Mm.389950	NM_054103	ENSMUSG00000031027	Stk33	4921505G21Rik|AW061264	serine/threonine kinase 33	protein-coding	4.551	3.121	1.455	5.263	4.222	2.569	6.192	5.910	4.394	4.820	5.033	3.652	5.681	5.631	5.626	nan	5.827	nan	nan	1.423	1.197	1.297	1.169	1.075	6.146
10456	chr4	119942440	119945799	+	0	NA	intron (NM_010657, intron 1 of 8)	L1MC4a|LINE|L1	129441	NM_010657	16656	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0.414	0.777	0.396	0.766	0.381	0.037	0.385	0.495	0.461	0.718	1.120	0.310	0.235	0.400	0.485	nan	0.244	0.752	2.560	1.216	1.194	4.337	1.715	1.232	0.936
1049	chr1	194956590	194959276	+	0	NA	intron (NR_033564, intron 4 of 4)	intron (NR_033564, intron 4 of 4)	19026	NR_033564	320400	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	2.507	1.593	1.041	1.751	0.968	0.633	1.938	2.203	1.719	1.689	2.688	2.097	2.414	1.808	2.757	nan	2.453	2.722	7.000	4.435	2.811	6.842	6.591	5.421	nan
4544	chr14	25897219	25898640	+	0	NA	intron (NM_207229, intron 1 of 3)	B1_Mur4|SINE|Alu	4964	NM_207229	211623	Mm.439926	NM_207229	ENSMUSG00000095304	Plac9a	Plac9	placenta specific 9a	protein-coding	2.612	0.767	0.565	0.572	0.786	0.527	2.479	2.774	1.179	2.146	0.392	0.573	3.181	3.288	2.029	2.444	1.875	1.842	0.974	0.652	0.604	nan	1.465	0.556	3.842
11533	chr5	106214993	106215939	+	0	NA	Intergenic	Intergenic	-105874	NR_136913	102635633	Mm.383511	NR_136913	ENSMUSG00000105508	Gm32921	-	predicted gene, 32921	ncRNA	1.025	1.047	0.369	1.526	1.302	0.422	2.388	2.061	1.438	1.905	1.262	0.921	1.972	3.268	2.442	1.483	0.808	1.462	1.596	1.943	0.354	2.866	2.215	1.009	1.520
11994	chr5	151135587	151138205	+	0	NA	intron (NM_146258, intron 1 of 13)	ORR1F|LTR|ERVL-MaLR	53297	NM_001163493	243362	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	0.680	0.706	0.596	nan	0.147	0.311	0.822	1.679	nan	0.386	0.352	1.939	0.324	0.494	0.292	nan	0.521	0.701	2.963	1.808	2.037	1.377	7.424	6.658	nan
8482	chr2	102515721	102516670	+	0	NA	Intergenic	Intergenic	-33826	NM_173749	210622	Mm.28649	NM_173749	ENSMUSG00000027188	Pamr1	5930437L24|E430002G05Rik|Ramp	peptidase domain containing associated with muscle regeneration 1	protein-coding	4.648	1.265	0.375	2.204	0.185		2.075	2.850	2.034	1.867	1.055	0.834	4.427	3.678	2.884	4.077	4.112	2.086	0.740	0.359	0.196	1.690	0.374	0.369	5.013
1488	chr10	79608287	79632324	+	0	NA	intron (NM_001024539, intron 12 of 12)	intron (NM_001024539, intron 12 of 12)	-6280	NM_001168624	237397	Mm.334207	NM_198614	ENSMUSG00000045912	C2cd4c	4932409I22Rik|Fam148c|Gm238	C2 calcium-dependent domain containing 4C	protein-coding	10.727	10.493	3.201	nan	5.277	3.404	8.129	9.181	5.526	9.850	7.595	3.976	7.456	11.409	9.109	10.355	6.836	8.765	nan	2.498	2.584	5.213	2.779	2.852	14.035
13920	chr7	150498020	150501825	+	0	NA	Intergenic	Intergenic	5185087	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	6.823	nan	0.438	4.739	6.106	3.831	9.277	10.904	5.135	7.701	1.791	1.518	9.010	11.470	7.664	8.399	6.711	8.698	1.058	0.509	0.472	0.790	nan	0.601	7.585
14637	chr8	119636666	119640638	+	0	NA	Intergenic	T-rich|Low_complexity|Low_complexity	-2972	NM_025734	66733	Mm.358699	NM_025734	ENSMUSG00000045246	Kcng4	4921535I01Rik|AW049024|KV6.3|KV6.4	potassium voltage-gated channel, subfamily G, member 4	protein-coding	4.729	0.771	0.699	4.431	4.819	2.953	5.932	9.596	3.758	3.836	3.041	2.955	6.579	6.554	8.049	6.842	3.990	5.823	3.230	2.617	2.508	5.948	3.801	3.506	5.964
10355	chr4	106891401	106894803	+	0	NA	Intergenic	RMER19B|LTR|ERVK	-18368	NM_198438	72475	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	0.716	0.712	0.530	0.860	0.522	0.424	0.873	nan	1.351	1.103	0.267	0.511	0.887	1.088	1.210	1.373	0.942	nan	2.682	2.280	2.038	4.842	3.793	3.152	1.661
2725	chr11	97519712	97525803	+	0	NA	intron (NM_018873, intron 18 of 19)	intron (NM_018873, intron 18 of 19)	-22417	NM_001289118	100141474	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	9.419	18.147	5.047	10.813	5.733	3.491	8.356	9.113	5.974	11.224	4.893	3.219	8.985	11.781	9.992	11.383	6.524	9.497	3.938	nan	3.064	4.252	nan	nan	13.033
3892	chr13	24235580	24238089	+	0	NA	intron (NM_001311122, intron 2 of 37)	intron (NM_001311122, intron 2 of 37)	43956	NM_001311122	68732	Mm.211047	NM_026825	ENSMUSG00000021338	Carmil1	1110037D04Rik|AI425970|CARMIL|CARML1|D130057M20|Lrrc16|Lrrc16a	capping protein regulator and myosin 1 linker 1	protein-coding	3.889	0.530	0.334	3.277	2.910	1.426	4.591	4.753	3.707	3.576	1.174	1.401	3.023	5.364	3.748	2.728	1.652	5.595	1.797	1.377	0.639	2.980	2.227	1.299	2.966
6147	chr16	58622168	58624318	+	0	NA	Intergenic	Intergenic	-6265	NM_001033404	328695	Mm.293308	NM_001033404	ENSMUSG00000075002	Gm813	Gm1781	predicted gene 813	protein-coding	6.016	0.820	0.693	1.361	1.746	0.847	4.606	2.456	1.786	1.551	0.715	0.557	3.388	5.279	5.096	5.906	7.223	2.088	nan	0.933	1.151	0.415	0.970	0.759	4.683
4932	chr14	103379633	103382608	+	0	NA	Intergenic	Intergenic	-34320	NM_207215	105689	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	5.570	10.517	2.770	8.699	1.491	1.124	1.557	1.560	3.092	6.334	2.113	0.935	1.697	2.850	3.887	4.594	1.923	4.531	5.138	2.353	2.223	2.849	4.991	5.650	5.949
4316	chr13	98771332	98773717	+	0	NA	intron (NM_172591, intron 8 of 25)	B1_Mus1|SINE|Alu	42925	NM_172591	218503	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	4.837	0.886	0.529	3.805	3.944	1.991	6.739	5.707	4.220	4.103	3.461	3.319	5.150	5.753	4.568	3.863	nan	5.211	4.853	2.879	1.935	3.269	5.944	4.477	5.235
8162	chr2	33444765	33451826	+	0	NA	Intergenic	Intergenic	-16971	NM_001276332	241311	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	0.507	1.250	0.797	0.476	0.230	0.172	0.426	nan	0.282	nan	0.513	0.239	0.425	0.351	0.382	0.831	0.333	0.686	3.873	2.387	3.071	6.463	4.332	3.556	0.637
2516	chr11	78791531	78800233	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-30713	NM_001076681	66274	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	nan	2.993	1.301	4.315	3.675	3.113	nan	3.396	3.621	4.143	3.109	1.901	3.513	nan	nan	3.905	2.724	nan	1.941	1.656	nan	1.302	1.671	1.227	4.328
5911	chr16	23102022	23105279	+	0	NA	Intergenic	RSINE1|SINE|B4	-3747	NM_001347179	13682	Mm.260084	NM_013506	ENSMUSG00000022884	Eif4a2	4833432N07Rik|BM-010|Ddx2b|Eif4|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding	4.287	2.403	2.532	2.481	4.606	5.627	3.489	4.471	3.356	3.234	1.305	2.214	3.896	3.703	2.721	4.170	4.125	4.061	1.627	2.093	3.317	1.593	nan	3.293	2.938
8907	chr2	158348298	158350064	+	0	NA	Intergenic	Intergenic	12328	NR_015463	68108	Mm.119198	NR_015463		Snhg17	9430008C03Rik	small nucleolar RNA host gene 17	ncRNA	2.411	1.303	0.295	2.632	1.747	0.939	4.072	5.273	nan	2.262	2.734	1.335	4.046	5.353	3.733	5.669	2.714	nan	nan	0.724	0.421	1.254	0.540	0.266	5.111
2616	chr11	88467379	88477832	+	0	NA	intron (NM_054043, intron 7 of 13)	intron (NM_054043, intron 7 of 13)	119832	NR_039545	100628571		NR_039545	ENSMUSG00000092985	Mir378b	mir-378b|mmu-mir-378b	microRNA 378b	ncRNA	nan	11.492	5.276	nan	2.695	1.524	2.704	3.146	2.249	2.527	1.660	1.907	2.225	3.082	3.226	2.920	2.382	3.525	2.715	2.093	1.548	nan	2.515	1.664	nan
3362	chr12	58389213	58393068	+	0	NA	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-121882	NM_025809	66864	Mm.280563	NM_025809	ENSMUSG00000045930	Clec14a	1200003C23Rik|AI642649	C-type lectin domain family 14, member a	protein-coding	0.982	nan	0.475	0.534	0.637	0.192	0.573	0.534	0.602	0.476	0.594	4.433	0.528	0.484	nan	nan	1.117	nan	3.184	3.439	1.718	1.579	5.070	3.381	0.405
1408	chr10	69370637	69373794	+	0	NA	Intergenic	Intergenic	-19303	NM_007659	12534	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	5.505	0.590	0.783	1.785	2.914	2.071	3.055	4.524	2.821	3.699	2.077	0.834	4.838	6.316	2.818	5.170	6.434	nan	1.347	1.551	0.749	1.476	1.615	0.873	4.072
6116	chr16	50752017	50754496	+	0	NA	Intergenic	Intergenic	-20483	NR_028300	68190	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	7.720	1.746	1.173	5.159	3.852	1.628	3.514	4.459	2.804	3.110	1.460	1.275	5.475	5.731	4.117	5.081	2.947	7.034	0.860	0.717	0.297	0.703	0.620	0.208	4.540
11193	chr5	37379688	37381527	+	0	NA	intron (NM_145920, intron 10 of 19)	intron (NM_145920, intron 10 of 19)	42129	NM_145920	68525	Mm.25506	NM_145920	ENSMUSG00000050248	Evc2	1110017L09Rik|Lbn|limbin	Ellis van Creveld syndrome 2	protein-coding	4.039	7.102	2.162	4.405	1.259	0.412	3.117	4.345	2.528	4.418	2.597	2.279	3.060	5.633	5.233	5.475	nan	4.753	3.413	1.472	0.909	3.171	1.690	1.674	6.786
4224	chr13	63817420	63823165	+	0	NA	intron (NM_001013608, intron 2 of 18)	AT_rich|Low_complexity|Low_complexity	4958	NM_023507	76251	Mm.186610	NM_023507	ENSMUSG00000021470	Ercc6l2	0610007P08Rik|1700019D06Rik|9330134C04Rik|Rad26l|Sr278	excision repair cross-complementing rodent repair deficiency, complementation group 6 like 2	protein-coding	3.382	1.039	0.678	4.359	3.351	2.197	5.033	1.872	3.427	3.789	1.584	0.653	6.391	9.081	6.005	nan	2.672	6.808	1.349	0.909	0.420	0.980	0.858	0.476	8.915
4249	chr13	74944231	74946561	+	0	NA	Intergenic	RMER16-int|LTR|ERVK	-136636	NM_001301153	12380	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	8.005	7.984	2.545	9.088	3.964	1.894	5.648	3.102	3.670	5.061	7.731	3.461	5.041	8.148	7.407	6.133	2.512	7.255	1.787	1.031	0.835	1.802	1.204	0.787	9.794
9248	chr3	38025709	38030131	+	0	NA	Intergenic	L1Md_F2|LINE|L1	129107	NR_040559	626410	Mm.389417	NR_040559	ENSMUSG00000106461	Gm20755	-	predicted gene, 20755	ncRNA	6.234	1.612	0.854	4.028	3.813	2.385	8.825	6.433	4.792	5.589	4.482	1.250	8.417	8.598	7.189	6.895	6.075	6.548	nan	0.523	0.452	nan	1.737	1.552	5.693
578	chr1	130138399	130141801	+	0	NA	intron (NM_172485, intron 17 of 27)	MTC|LTR|ERVL-MaLR	282943	NM_007827	13137	Mm.436759	NM_007827	ENSMUSG00000026401	Cd55b	AI323748|Daf|Daf-TM|Daf2|TM-DAF	CD55 molecule, decay accelerating factor for complement B	protein-coding	7.876	nan	2.018	5.390	3.891	2.739	5.232	4.409	3.312	5.583	2.728	2.275	7.219	6.845	5.305	9.281	7.806	5.221	nan	1.531	1.973	2.205	2.017	1.827	8.281
12997	chr7	25083880	25085985	+	0	NA	Intergenic	Intergenic	7686	NM_175477	232976	Mm.41568	NM_175477	ENSMUSG00000045252	Zfp574	A630056B21Rik|Znf574	zinc finger protein 574	protein-coding	4.039	4.453	2.138	4.862	2.279	0.876	1.384	2.543	3.332	5.272	2.004	1.780	1.496	2.799	3.387	3.304	3.277	3.609	4.276	3.963	3.191	4.049	3.891	4.617	4.676
12478	chr6	92845178	92847129	+	0	NA	intron (NM_175314, intron 18 of 29)	intron (NM_175314, intron 18 of 29)	55288	NM_175314	101401	Mm.158235	NM_175314	ENSMUSG00000030022	Adamts9	1810011L16Rik|8430403M15Rik|AW743315|E030027K14Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 9	protein-coding	2.821	0.403	0.400	nan	3.555	1.391	4.862	4.877	2.077	2.256	0.211	0.208	5.047	6.118	4.153	4.389	3.400	4.476	nan	0.744	0.240	1.082	0.778	0.681	2.183
695	chr1	138123736	138130839	+	0	NA	intron (NM_001111316, intron 1 of 31)	intron (NM_001111316, intron 1 of 31)	47839	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	9.993	1.094	0.564	nan	3.142	1.511	9.554	8.000	5.054	5.796	8.405	4.660	10.199	9.724	8.856	13.797	8.335	7.562	0.674	0.946	0.720	1.002	0.784	0.657	11.248
4418	chr13	112725299	112726875	+	0	NA	exon (NM_178746, exon 13 of 15)	exon (NM_178746, exon 13 of 15)	65321	NM_178746	268706	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	5.189	8.567	5.124	4.213	2.696	2.533	2.172	3.899	2.530	2.565	2.106	1.169	2.644	3.140	4.403	4.902	3.379	3.025	3.233	3.003	3.471	5.869	2.442	2.469	4.173
15037	chr9	45745713	45747105	+	0	NA	intron (NM_001081270, intron 26 of 32)	intron (NM_001081270, intron 26 of 32)	82229	NM_001081373	214552	Mm.260103	NM_172531	ENSMUSG00000043987	Cep164	AI450905|BC027092|D030051D21|mKIAA1052	centrosomal protein 164	protein-coding	1.449	2.009	0.469	1.704	0.713	0.090	1.496	0.596	1.184	2.202	0.823	0.551	2.237	3.665	1.855	1.390	0.526	2.336	0.565	0.734	0.264	2.606	0.404	0.173	4.333
14865	chr9	14378420	14380383	+	0	NA	intron (NM_028013, intron 1 of 1)	intron (NM_028013, intron 1 of 1)	1841	NM_028013	71946	Mm.41423	NM_028013	ENSMUSG00000037419	Endod1	2210414F18Rik|2310067E08Rik|C85344	endonuclease domain containing 1	protein-coding	4.930	1.068	0.369	2.644	0.973	0.874	4.112	4.800	1.745	2.735	1.874	2.191	3.205	4.446	3.607	3.904	2.093	2.619	5.845	1.740	2.244	5.337	5.565	4.581	7.160
12757	chr6	131728762	131730655	+	0	NA	Intergenic	Intergenic	-39645	NM_207019	387346	Mm.377908	NM_207019	ENSMUSG00000063478	Tas2r114	T2R14|Tas2r14|mGR14|mt2r46	taste receptor, type 2, member 114	protein-coding	0.287	nan	0.342	0.106	0.165	0.053	0.420	nan	0.251	0.417	0.226	0.121	0.145	0.318	0.260	nan	0.525	0.357	2.608	5.206	4.054	5.277	5.683	5.249	0.362
10204	chr4	81702693	81705590	+	0	NA	Intergenic	L1Md_A|LINE|L1	-217128	NR_030570	100124446		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA	0.423	0.666	0.397	0.636	0.345	0.203	0.419	0.338	0.610	0.406	0.527	0.522	0.212	0.228	0.366	0.595	0.421	0.749	2.331	6.701	3.757	11.488	0.757	0.525	0.445
11997	chr5	151401034	151402904	+	0	NA	intron (NR_045700, intron 2 of 3)	IMPB_01|Satellite|Satellite	-4535	NR_131166	100042166	Mm.443286	NR_131166	ENSMUSG00000097321	Gm3704	-	predicted gene 3704	ncRNA	4.502	7.038	3.951	2.726	2.546	1.164	5.692	6.936	2.113	2.387	4.705	2.546	4.150	4.542	2.560	3.330	3.731	3.382	1.585	2.070	1.352	1.731	1.750	0.782	2.604
6553	chr17	34045730	34047680	+	0	NA	intron (NM_009926, intron 6 of 63)	intron (NM_009926, intron 6 of 63)	7567	NM_001317722	12815	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	13.817	15.282	6.132	10.492	10.086	5.698	14.090	10.567	4.794	10.051	8.646	4.493	7.793	14.558	9.314	14.212	10.791	9.541	5.790	4.706	5.658	5.512	6.158	4.234	18.217
15132	chr9	58401292	58406796	+	0	NA	Intergenic	Intergenic	33540	NR_040727	73529	Mm.490924	NR_040727	ENSMUSG00000100487	1700072B07Rik	-	RIKEN cDNA 1700072B07 gene	ncRNA	5.584	0.919	0.724	3.730	1.845	1.067	5.426	nan	3.999	6.386	5.291	3.397	5.765	6.342	6.369	7.670	4.405	5.252	4.748	3.397	2.680	5.506	4.481	3.509	11.421
5372	chr15	76972277	76973711	+	0	NA	Intergenic	MLTR12|LTR|ERV1	24450	NM_054099	117171	Mm.322968	NM_054099	ENSMUSG00000063236	1110038F14Rik	-	RIKEN cDNA 1110038F14 gene	protein-coding	3.281	nan	0.448	2.088	1.293	0.522	3.069	5.187	2.543	2.708	1.226	2.008	4.689	4.256	4.775	4.897	3.984	4.341	1.887	0.891	1.009	2.352	1.948	1.224	4.840
5167	chr15	53102082	53103852	+	0	NA	intron (NM_010162, intron 3 of 10)	intron (NM_010162, intron 3 of 10)	243216	NM_010162	14042	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	5.525	1.153	1.078	2.532	2.610	1.406	6.084	7.272	3.301	3.590	2.852	2.044	6.264	4.303	3.497	5.048	5.179	2.783	0.885	1.502	1.122	1.130	0.765	1.086	4.143
11526	chr5	106038163	106043523	+	0	NA	Intergenic	Intergenic	164275	NM_018759	54367	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	3.991	1.635	1.003	3.297	2.446	1.201	4.985	4.346	4.160	4.136	1.243	1.647	5.260	5.098	5.438	4.924	3.443	4.696	nan	0.585	0.480	0.596	0.411	0.558	2.675
14984	chr9	41953882	41957557	+	0	NA	Intergenic	Intergenic	168570	NM_011436	20660	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.873	10.047	6.652	0.829	0.454	0.301	0.614	0.732	1.026	1.195	1.296	0.564	0.486	0.942	0.903	0.652	nan	1.020	nan	1.005	0.433	0.545	0.448	0.440	0.694
9144	chr3	10040331	10044748	+	0	NA	Intergenic	Intergenic	29954	NM_001272098	16592	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	3.213	0.785	0.393	1.518	1.033	0.558	6.762	3.982	1.574	2.058	1.006	1.448	2.592	4.125	4.303	5.845	4.189	3.270	0.608	0.454	0.186	0.436	0.370	0.207	5.037
11613	chr5	116180605	116183048	+	0	NA	intron (NM_177759, intron 3 of 13)	intron (NM_177759, intron 3 of 13)	-98580	NM_001101546	545798	Mm.483995	NM_001101546	ENSMUSG00000079278	Tmem233	DSPB2|Gm13843|OTTMUSG00000014722	transmembrane protein 233	protein-coding	1.591	3.693	1.023	2.015	0.714	1.128	2.970	4.657	1.345	4.904	0.501	0.807	3.010	3.076	4.931	4.737	2.225	2.822	nan	nan	1.865	6.139	2.881	5.555	6.355
3137	chr11	121397167	121398624	+	0	NA	Intergenic	MMERVK10C-int|LTR|ERVK	-9644	NM_139147	217371	Mm.281639	NM_139147	ENSMUSG00000025170	Rab40b	SEC4L|rar	Rab40B, member RAS oncogene family	protein-coding	2.873	nan	0.382	1.556	1.711	1.080	3.003	4.400	2.833	3.575	4.164	2.027	2.468	4.627	3.674	3.339	2.834	3.088	3.051	2.850	0.569	3.080	3.085	2.319	2.402
1732	chr10	111231311	111234109	+	0	NA	intron (NM_175489, intron 3 of 23)	RMER17C2|LTR|ERVK	-65969	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	7.144	0.503	0.514	4.211	3.942	2.952	6.009	6.263	7.429	7.644	7.309	8.218	8.016	8.161	6.599	6.614	7.139	6.794	0.882	1.250	0.901	0.673	0.533	0.640	6.196
861	chr1	172091595	172095448	+	0	NA	intron (NM_009938, intron 6 of 32)	ID_B1|SINE|B4	-10772	NM_021607	59287	Mm.218203	NM_021607	ENSMUSG00000003458	Ncstn	9430068N19Rik|AA727311|Aph2|D1Dau13e|Kiaa0253|Nct|mKIAA0253	nicastrin	protein-coding	9.529	1.362	1.108	nan	2.180	1.023	2.980	4.294	nan	4.109	5.064	3.401	5.487	5.226	4.977	5.868	5.552	5.047	1.228	0.779	0.477	nan	nan	0.344	nan
337	chr1	77993814	77996667	+	0	NA	Intergenic	Intergenic	201896	NM_008781	18505	Mm.1371	NM_008781	ENSMUSG00000004872	Pax3	Pax-3|Sp|Splchl2|splotch	paired box 3	protein-coding	7.750	0.476	0.547	3.735	2.656	2.089	3.371	5.521	3.879	4.396	0.641	0.440	6.491	4.693	5.185	8.032	7.256	6.932	nan	nan	0.467	0.305	nan	0.313	4.956
3706	chr12	109167362	109170047	+	0	NA	Intergenic	L1Md_F3|LINE|L1	-100487	NM_001163175	380785	Mm.342085	NM_001163175	ENSMUSG00000040867	Begain	BM948371|Gm897	brain-enriched guanylate kinase-associated	protein-coding	1.321	3.147	0.763	nan	0.178	0.233	2.688	nan	nan	nan	1.007	0.435	2.021	nan	2.647	4.953	2.736	2.243	1.746	0.494	0.625	1.084	0.886	0.882	4.029
10887	chr4	148273835	148305595	+	0	NA	Intergenic	Intergenic	-1750	NM_001083342	242748	Mm.33873	NM_001083342	ENSMUSG00000041544	Ptchd2	Disp3|G630052C06Rik|RNDEu-2	patched domain containing 2	protein-coding	2.794	nan	0.713	5.372	2.133	1.114	2.875	2.627	1.886	2.383	1.133	0.910	2.454	2.900	2.710	3.368	1.711	4.197	4.448	2.801	2.424	8.656	5.895	4.753	4.912
10798	chr4	139522726	139524654	+	0	NA	Intergenic	Intergenic	-6858	NM_183148	212632	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	6.099	0.903	0.241	5.193	1.330	0.635	9.072	6.802	nan	4.729	5.968	2.734	6.740	7.160	7.289	9.475	4.673	5.447	9.865	1.697	1.424	8.928	3.923	1.953	14.663
10146	chr4	62034470	62036705	+	0	NA	Intergenic	Intergenic	18530	NM_001012323	381530	Mm.460005	NM_001012323	ENSMUSG00000078672	Mup20	Gm12560|Mup24|OTTMUSG00000007485|darcin	major urinary protein 20	protein-coding	2.864	nan	0.320	2.010	2.198	0.845	nan	3.775	3.071	2.787	0.597	1.108	3.691	3.581	2.385	2.899	2.419	3.948	1.831	0.913	0.424	2.079	1.021	0.428	3.100
13864	chr7	146478839	146483628	+	0	NA	Intergenic	Intergenic	1166398	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	3.835	nan	0.288	nan	1.445	0.679	5.767	6.826	nan	2.365	3.511	2.583	4.645	4.576	5.659	5.460	5.365	4.095	0.938	0.636	0.577	1.067	nan	0.477	4.672
3172	chr12	8776940	8810495	+	0	NA	TTS (NM_011519)	TTS (NM_011519)	22321	NM_011519	20969	Mm.2580	NM_011519	ENSMUSG00000020592	Sdc1	AA408134|AA409076|CD138|Sstn|Synd|Synd1|syn-1	syndecan 1	protein-coding	8.395	1.429	0.582	4.796	3.795	2.103	7.795	7.233	5.702	7.622	8.710	4.096	8.429	10.421	8.533	9.865	6.579	8.420	1.024	0.813	0.808	1.473	0.866	0.758	13.661
11542	chr5	108471907	108476103	+	0	NA	intron (NM_172716, intron 4 of 10)	intron (NM_172716, intron 4 of 10)	12673	NM_172716	69587	Mm.261218	NM_172716	ENSMUSG00000033623	Pcgf3	2310035N15Rik|AI662857|D630042K08Rik|DONG1|E430039C14|RNF3A|Rnf3	polycomb group ring finger 3	protein-coding	0.523	6.501	5.715	0.360	0.319	0.116	nan	0.404	0.321	0.426	0.258	0.266	0.250	0.405	0.465	0.448	0.609	0.437	nan	0.642	0.496	0.413	0.718	0.550	0.458
2718	chr11	97162313	97166809	+	0	NA	intron (NM_008379, intron 19 of 21)	intron (NM_008379, intron 19 of 21)	-14849	NM_198100	73174	Mm.27882	NM_198100	ENSMUSG00000038517	Tbkbp1	3110043L15Rik|ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding	5.104	nan	1.068	4.252	6.741	6.606	3.151	5.077	4.280	4.109	4.646	3.880	3.454	5.240	3.218	3.724	3.487	4.449	1.928	nan	3.267	3.710	nan	nan	2.977
12324	chr6	72408356	72411476	+	0	NA	Intergenic	B1_Mm|SINE|Alu	-4392	NM_019802	56316	Mm.19937	NM_019802	ENSMUSG00000053460	Ggcx	-	gamma-glutamyl carboxylase	protein-coding	2.326	1.134	1.089	4.212	2.099	1.056	1.355	1.558	1.656	1.413	1.281	1.772	0.717	1.686	1.474	1.796	1.201	1.841	2.663	2.068	1.463	3.148	2.611	1.647	1.337
9852	chr3	144246675	144249711	+	0	NA	Intergenic	Intergenic	-42938	NM_010723	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	4.477	4.071	2.441	2.751	2.601	1.499	6.494	3.372	4.191	3.655	1.934	2.232	9.412	6.454	6.227	4.946	4.431	5.634	3.825	2.490	1.453	2.670	3.286	1.623	3.129
571	chr1	129722728	129724408	+	0	NA	intron (NM_172485, intron 7 of 27)	L1Md_F2|LINE|L1	450264	NM_172485	210417	Mm.380518	NM_172485	ENSMUSG00000042581	Thsd7b	1700074E13Rik|B930082A18|D130067I03Rik	thrombospondin, type I, domain containing 7B	protein-coding	5.175	nan	0.733	1.672	3.113	2.392	5.068	2.404	3.234	2.211	0.758	0.849	4.174	4.473	4.276	6.225	5.798	2.595	nan	0.724	0.874	1.000	0.913	0.759	2.978
6331	chr17	12351960	12358095	+	0	NA	Intergenic	Intergenic	-23582	NM_008877	18815	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	2.407	10.360	5.675	2.278	1.270	0.870	1.597	1.730	1.636	1.762	0.856	0.696	1.943	2.659	1.765	2.317	nan	2.537	nan	1.758	1.833	2.844	1.953	1.915	1.926
15198	chr9	64653108	64661552	+	0	NA	intron (NM_172522, intron 8 of 22)	RLTR24|LTR|ERV1	80426	NM_017382	53869	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	2.044	3.899	1.683	2.640	1.234	0.919	0.968	0.946	1.535	2.053	1.420	0.781	1.007	1.968	nan	1.675	1.115	1.885	nan	2.651	2.214	5.833	2.254	1.798	2.319
9703	chr3	108631313	108634926	+	0	NA	exon (NM_181400, exon 10 of 15)	exon (NM_181400, exon 10 of 15)	-20794	NM_145543	229725	Mm.214545	NM_145543	ENSMUSG00000027884	Clcc1	Mclc	chloride channel CLIC-like 1	protein-coding	5.846	5.084	3.859	3.746	4.265	2.672	5.618	3.407	3.941	3.513	0.974	1.181	5.492	5.958	4.361	5.751	5.197	6.174	0.953	1.301	0.980	0.677	0.761	0.874	5.161
1190	chr10	24843622	24851447	+	0	NA	Intergenic	Intergenic	-11339	NM_134005	209558	Mm.338425	NM_134005	ENSMUSG00000019989	Enpp3	AI876438|CD203c	ectonucleotide pyrophosphatase/phosphodiesterase 3	protein-coding	9.808	0.687	0.543	5.318	4.261	1.597	4.324	3.998	6.776	8.303	1.062	0.981	8.352	7.038	6.124	8.950	8.046	7.883	0.962	0.908	0.651	0.869	0.499	0.281	8.344
5428	chr15	79269892	79273111	+	0	NA	intron (NM_177580, intron 5 of 13)	intron (NM_177580, intron 5 of 13)	14008	NM_177580	207495	Mm.309647	NM_177580	ENSMUSG00000018126	Baiap2l2	BC048937	BAI1-associated protein 2-like 2	protein-coding	8.495	4.981	0.853	8.310	4.134	3.272	9.230	12.214	3.981	8.956	4.579	2.639	8.356	8.424	8.549	8.607	5.860	8.695	3.588	2.668	1.968	4.846	2.455	2.974	13.320
13893	chr7	148590695	148592434	+	0	NA	Intergenic	Intergenic	3276729	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	4.444	0.897	0.600	2.971	3.469	3.782	6.291	5.255	3.165	3.519	2.157	2.058	5.261	6.023	5.019	4.548	3.274	4.694	3.812	1.235	1.643	2.454	nan	2.334	7.619
6091	chr16	45375391	45379882	+	0	NA	Intergenic	Intergenic	31417	NM_010818	17470	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	7.518	1.726	1.049	3.632	4.034	2.478	2.980	5.326	4.164	6.021	2.550	1.052	5.767	7.260	5.031	6.247	4.742	6.755	0.895	1.076	0.449	0.639	0.673	0.352	4.496
10874	chr4	147513517	147514846	+	0	NA	TTS (NM_001039209)	TTS (NM_001039209)	-39096	NM_001014397	433804	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154|OTTMUSG00000010673	zinc finger protein 985	protein-coding	9.192	11.173	3.762	8.670	4.130	1.781	5.054	7.843	4.801	7.601	5.616	3.897	6.574	10.858	9.273	9.658	3.625	6.512	7.730	2.633	1.781	6.515	8.565	5.404	12.441
6071	chr16	42865589	42867599	+	0	NA	intron (NR_040522, intron 1 of 1)	intron (NR_040522, intron 1 of 1)	8993	NR_040521	75722	Mm.243747	NR_040521	ENSMUSG00000075070	4932412D23Rik	ENSMUSG00000075070|Gm10809	RIKEN cDNA 4932412D23 gene	ncRNA	5.283	0.470	0.321	2.213	1.597	0.517	2.512	4.252	3.306	3.420	0.696	0.777	7.189	5.361	3.004	3.923	3.166	5.164	0.424	0.333	0.237	0.623	0.206	0.098	nan
14508	chr8	97949693	97952572	+	0	NA	Intergenic	Intergenic	-1060755	NR_110579	100873092	Mm.414599	NR_110579	ENSMUSG00000089819	Gm15679	OTTMUSG00000025218	predicted gene 15679	ncRNA	7.101	2.617	1.247	4.783	3.066	1.911	3.566	7.896	5.003	5.227	4.841	2.587	7.094	5.664	5.997	8.268	6.995	7.131	1.495	1.643	1.360	2.865	1.955	1.433	7.514
12542	chr6	99828940	99836109	+	0	NA	Intergenic	Intergenic	-106132	NM_001170419	50501	Mm.87365	NM_015768	ENSMUSG00000030069	Prok2	Bv8|PK2|Prok1	prokineticin 2	protein-coding	0.408	0.903	0.401	0.376	0.242	0.086	0.475	0.463	0.337	0.309	0.260	0.267	0.246	0.246	nan	nan	0.568	0.538	nan	nan	2.576	5.839	3.729	3.250	0.515
7200	chr18	39809408	39810661	+	0	NA	Intergenic	Intergenic	36537	NM_011033	18459	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	4.145	2.807	2.480	2.866	1.563	0.697	2.138	5.296	2.819	2.881	1.429	0.924	2.875	3.900	2.621	2.826	2.169	4.449	3.246	1.482	0.901	4.019	2.115	1.436	4.067
1171	chr10	22450376	22452207	+	0	NA	Intergenic	ETnERV2-int|LTR|ERVK	48478	NR_028580	100038752	Mm.392859	NR_028580	ENSMUSG00000096937	Gm10825	ENSMUSG00000075295	predicted gene 10825	ncRNA	10.290	15.355	4.632	14.338	4.621	2.307	7.305	7.149	5.445	13.793	6.304	5.447	7.329	8.809	9.982	10.510	6.075	10.951	6.532	2.569	5.034	8.257	3.898	5.953	19.949
5715	chr15	101965643	101967392	+	0	NA	Intergenic	Intergenic	-12230	NM_212487	332131	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	6.149	8.883	2.895	8.171	2.655	1.727	6.548	10.203	3.734	6.937	4.105	2.872	8.026	6.690	8.124	8.198	5.914	6.999	4.046	1.603	3.002	4.607	2.167	2.668	11.157
4153	chr13	54569503	54570852	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	-4795	NM_133797	97820	Mm.24593	NM_133797	ENSMUSG00000025871	4833439L19Rik	4930558H15Rik|C81457|Kiaa1191|P33monox	RIKEN cDNA 4833439L19 gene	protein-coding	8.863	8.542	8.295	7.603	8.932	5.319	9.786	7.500	5.187	7.193	5.331	4.049	4.627	7.290	5.800	6.514	7.204	5.520	4.921	7.761	8.709	4.704	9.946	9.071	9.653
13774	chr7	134716171	134717957	+	0	NA	intron (NM_001033420, intron 1 of 51)	intron (NM_001033420, intron 1 of 51)	46377	NM_001033420	330662	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik	dedicator of cytokinesis 1	protein-coding	6.790	9.557	5.785	7.484	7.715	6.511	7.209	9.355	4.921	4.946	4.537	2.905	7.250	7.078	7.233	7.415	6.722	6.799	4.465	3.813	5.829	5.065	6.025	6.117	10.121
236	chr1	62813310	62815016	+	0	NA	intron (NM_001077403, intron 16 of 16)	intron (NM_001077403, intron 16 of 16)	-19431	NR_040601	74992	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	1.840	0.788	0.734	1.308	1.409	0.270	3.210	1.980	2.353	1.681	6.906	3.431	2.785	4.025	3.250	2.656	0.881	2.692	1.829	0.520	0.431	1.828	1.975	1.009	1.749
706	chr1	138613509	138615846	+	0	NA	intron (NM_001311148, intron 1 of 7)	intron (NM_001311148, intron 1 of 7)	5080	NM_021605	59125	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	7.622	0.859	0.655	2.906	2.175	1.605	6.872	5.243	3.707	4.265	2.665	1.265	7.407	6.806	7.490	9.527	8.769	7.607	0.983	0.647	0.820	0.901	0.784	0.655	6.021
4550	chr14	26351294	26354703	+	0	NA	Intergenic	RLTR28|LTR|ERVL	-4549	NR_038005	71106	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	5.250	2.648	0.746	5.594	3.271	1.204	4.392	5.304	3.328	3.590	2.641	1.802	3.773	5.141	4.454	5.378	2.008	6.793	1.898	0.791	0.801	2.171	1.065	0.943	10.428
10960	chr4	151565270	151567918	+	0	NA	intron (NM_001081557, intron 4 of 23)	intron (NM_001081557, intron 4 of 23)	295174	NM_001081557	100072	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	3.908	nan	1.808	3.249	5.324	3.237	2.218	4.203	3.210	3.265	2.351	2.867	2.271	2.546	1.633	2.262	2.603	2.652	6.086	7.015	5.197	8.646	6.241	4.859	1.796
14932	chr9	30926509	30930878	+	0	NA	Intergenic	Intergenic	-6241	NM_001024139	235130	Mm.65867	NM_001024139	ENSMUSG00000033453	Adamts15	-	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 15	protein-coding	4.564	5.448	2.643	3.682	3.100	1.190	3.972	5.014	3.185	4.554	2.243	1.696	4.535	4.384	3.570	4.957	2.687	5.108	5.155	2.507	1.736	5.200	4.387	2.831	7.633
1608	chr10	93201742	93209547	+	0	NA	intron (NM_146239, intron 1 of 16)	MER77|LTR|ERVL	42859	NR_035452	100316689		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	0.662	0.519	0.385	0.779	0.651	0.394	0.217	0.330	0.419	0.465	nan	0.478	0.184	0.269	0.315	0.551	0.603	0.707	nan	3.717	3.653	nan	5.029	4.540	0.412
10350	chr4	106663851	106677938	+	0	NA	intron (NM_028209, intron 5 of 9)	intron (NM_028209, intron 5 of 9)	7792	NM_001172073	72354	Mm.25806	NM_028209	ENSMUSG00000025413	Ttc4	2810002P21Rik|AF007005|L62	tetratricopeptide repeat domain 4	protein-coding	1.019	1.211	0.515	1.136	0.703	0.305	1.155	nan	1.307	1.087	1.085	0.732	1.149	1.190	1.781	1.997	0.760	nan	4.426	2.881	1.980	10.320	2.410	1.632	1.919
15048	chr9	47397084	47398888	+	0	NA	Intergenic	Intergenic	-132184	NM_001310841	54725	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	3.281	0.928	0.358	3.526	1.684	0.855	1.159	1.269	3.508	2.674	3.061	2.132	3.345	4.343	3.479	4.271	1.471	5.162	1.126	0.701	0.204	nan	0.496	0.406	4.619
2474	chr11	75673756	75675914	+	0	NA	TTS (NM_001080775)	TTS (NM_001080775)	-4424	NM_001277219	12928	Mm.280125	NM_133656	ENSMUSG00000017776	Crk	Crk-I|Crk-II|Crk-III|Crk3|CrkIII|Crko|c-Crk|p38	v-crk avian sarcoma virus CT10 oncogene homolog	protein-coding	2.186	1.156	0.703	3.470	3.609	1.512	nan	1.713	1.823	2.434	5.517	2.232	2.190	4.414	2.060	3.049	1.729	2.745	0.718	1.403	nan	1.413	1.183	0.595	3.708
3232	chr12	25528468	25530540	+	0	NA	Intergenic	L1MB5|LINE|L1	400330	NR_045844	432641	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	1.040	0.499	0.501	0.337	0.231	0.058	1.480	1.082	1.525	1.050	0.648	0.904	1.470	1.840	1.173	2.288	1.489	1.410	3.747	2.009	1.206	2.892	5.753	4.117	0.926
7923	chr2	3573944	3578126	+	0	NA	Intergenic	Intergenic	52734	NR_030564	100124442		NR_030564	ENSMUSG00000076966	Mir466b-2	Mirn466b-2	microRNA 466b-2	ncRNA	6.553	7.404	4.505	2.233	1.590	0.598	5.694	5.230	3.099	3.117	4.157	4.163	3.612	3.341	3.991	5.809	4.304	2.968	1.765	3.062	1.852	3.865	2.149	1.402	4.211
14087	chr8	25679435	25685492	+	0	NA	intron (NM_001081269, intron 11 of 22)	intron (NM_001081269, intron 11 of 22)	-37585	NR_121642	71910	Mm.385055	NM_028000	ENSMUSG00000031570	Plpp5	1810019D05Rik|2310022A04Rik|AW045471|Ppapdc1|Ppapdc1b	phospholipid phosphatase 5	protein-coding	2.711	nan	1.202	3.046	3.386	1.935	1.058	2.646	2.493	1.963	2.917	8.285	1.191	2.374	1.160	1.433	1.238	1.715	0.618	1.553	1.260	nan	0.638	0.676	1.336
14893	chr9	21154315	21161532	+	0	NA	Intergenic	Intergenic	-7791	NM_183408	18577	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	3.675	1.112	0.705	4.408	3.149	2.615	3.657	4.433	3.926	4.657	1.408	0.899	3.876	6.139	4.334	5.303	3.510	4.912	0.775	0.804	1.447	0.897	0.832	0.940	6.742
10864	chr4	144818803	144822226	+	0	NA	Intergenic	L1Md_T|LINE|L1	-33931	NM_001126316	329993	Mm.297407	NM_001126316	ENSMUSG00000078504	Gm438	-	predicted gene 438	protein-coding	8.872	6.007	1.450	5.382	4.209	1.874	5.992	4.519	4.619	5.552	3.241	2.915	6.876	7.857	7.220	6.555	3.090	6.318	7.715	2.591	1.535	8.799	3.867	2.624	9.025
1438	chr10	75254833	75261273	+	0	NA	intron (NM_153406, intron 6 of 15)	intron (NM_153406, intron 6 of 15)	45663	NM_001145826	74392	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	6.913	2.502	1.421	nan	2.154	1.193	7.033	6.915	2.468	3.594	1.118	0.887	6.505	7.059	nan	6.802	4.951	4.885	nan	0.866	0.743	0.908	1.272	1.159	8.993
1903	chr11	3946903	3948999	+	0	NA	Intergenic	Intergenic	-15873	NM_001130458	21452	Mm.20948	NM_015749	ENSMUSG00000020432	Tcn2	AW208754|Tcn-2	transcobalamin 2	protein-coding	1.182	0.598	0.400	1.964	1.576	0.945	1.321	1.212	1.284	1.986	0.744	0.383	2.023	4.621	1.952	3.423	1.887	1.927	0.613	nan	0.287	0.571	0.400	0.447	2.116
6957	chr17	88034066	88040425	+	0	NA	intron (NM_001081034, intron 1 of 22)	intron (NM_001081034, intron 1 of 22)	28040	NM_001081034	225055	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	3.900	1.710	0.766	2.386	2.488	1.372	5.880	5.521	nan	4.531	4.076	3.702	4.241	5.906	6.682	7.073	5.444	5.053	5.467	2.643	2.594	5.786	4.577	4.362	6.783
4766	chr14	65418162	65424018	+	0	NA	intron (NM_001205075, intron 1 of 3)	MIR3|SINE|MIR	4382	NM_001205075	18155	Mm.16347	NM_010932	ENSMUSG00000045731	Pnoc	N/OFQ|Npnc1|OFQ/N	prepronociceptin	protein-coding	0.996	1.653	0.688	1.973	0.903	0.268	0.867	0.919	1.043	1.173	0.652	0.531	0.531	0.961	1.200	1.611	0.655	1.703	3.004	nan	0.739	4.805	1.233	0.921	2.207
9585	chr3	97858623	97863895	+	0	NA	intron (NM_001039376, intron 1 of 46)	intron (NM_001039376, intron 1 of 46)	27448	NM_001289702	83679	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	5.962	1.565	0.642	6.620	4.892	2.184	6.941	5.489	5.654	6.192	4.794	3.030	8.635	8.844	7.771	9.253	6.254	8.103	1.584	1.125	0.894	1.184	1.083	0.662	7.374
7045	chr18	15260031	15262691	+	0	NA	Intergenic	RLTR41A2|LTR|ERV1	-109915	NM_134112	106931	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	7.111	0.367	0.405	2.205	3.300	1.776	5.554	5.050	4.885	5.504	1.674	0.833	9.597	7.625	4.906	5.573	5.652	5.303	0.848	0.827	0.393	0.691	0.541	0.222	5.712
7063	chr18	21530471	21532795	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-119932	NM_001271580	74644	Mm.329311	NM_001271580		4930426D05Rik	-	RIKEN cDNA 4930426D05 gene	protein-coding	10.066	0.785	0.619	1.438	1.124	0.527	4.692	11.772	1.445	3.287	2.170	0.793	4.899	6.324	3.613	4.012	6.373	2.682	4.631	2.129	1.828	1.210	7.020	4.560	5.299
14120	chr8	34760822	34768044	+	0	NA	Intergenic	(TTCTC)n|Simple_repeat|Simple_repeat	-43177	NM_176933	319520	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	7.068	3.376	2.103	3.342	4.570	4.677	4.214	10.121	4.095	5.561	6.902	6.075	4.629	6.670	4.884	5.322	6.380	4.716	1.804	1.880	2.517	3.176	1.978	2.363	nan
7504	chr19	6298979	6300607	+	0	NA	3' UTR (NM_010119, exon 5 of 5)	3' UTR (NM_010119, exon 5 of 5)	-6664	NM_001033342	240505	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	4.446	7.842	2.127	9.290	2.109	1.063	1.078	2.479	2.550	2.666	3.370	1.623	1.351	3.411	3.280	3.660	1.862	4.486	0.724	1.087	1.301	1.763	0.400	0.148	5.776
12331	chr6	72737118	72740035	+	0	NA	intron (NM_001079822, intron 3 of 12)	B3A|SINE|B2	50469	NM_001079822	21415	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	4.977	2.108	0.287	7.147	1.830	1.291	8.552	5.216	3.165	9.131	1.458	1.462	7.319	8.511	8.871	9.911	5.475	6.958	2.585	1.076	0.844	3.136	1.898	1.991	11.431
8944	chr2	163420823	163423538	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-2710	NM_025699	66680	Mm.25119	NM_025699	ENSMUSG00000035399	Oser1	3230401D17Rik|AI256769|Perit1	oxidative stress responsive serine rich 1	protein-coding	5.893	2.861	0.913	7.886	2.231	1.537	3.271	5.468	3.640	4.667	1.601	1.314	4.143	6.341	3.703	5.952	4.612	5.304	1.742	2.820	2.406	3.062	1.421	1.254	4.181
11598	chr5	115242860	115245283	+	0	NA	exon (NM_016698, exon 14 of 17)	exon (NM_016698, exon 14 of 17)	8220	NM_026398	117109	Mm.24636	NM_026398	ENSMUSG00000060152	Pop5	1500019J17Rik|2700077E03Rik|AW049989|Rnasep3	processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)	protein-coding	3.448	1.884	0.540	7.816	1.416	0.808	1.874	2.451	3.501	3.116	0.634	1.215	2.358	4.150	3.585	4.353	3.207	4.562	6.597	nan	1.750	4.003	2.572	2.152	4.853
11007	chr5	3599502	3601568	+	0	NA	intron (NM_001293806, intron 1 of 23)	intron (NM_001293806, intron 1 of 23)	-3988	NM_172991	269623	Mm.38014	NM_172991	ENSMUSG00000040302	Rbm48	AW548102|C030048B08Rik	RNA binding motif protein 48	protein-coding	3.669	0.720	0.392	2.063	1.534	1.326	1.772	1.796	1.937	2.065	0.516	0.458	1.632	3.520	3.261	3.159	3.694	2.106	0.565	0.215	0.210	0.560	0.151	0.234	3.593
6276	chr16	97813946	97818340	+	0	NA	exon (NM_144789, exon 11 of 24)	exon (NM_144789, exon 11 of 24)	35084	NM_144789	114604	Mm.328741	NM_144789	ENSMUSG00000014039	Prdm15	C21orf83|E130018M06Rik|ORF62|Zfp298	PR domain containing 15	protein-coding	4.584	0.574	0.351	2.566	3.099	1.476	3.880	5.694	nan	2.829	2.584	2.466	4.964	5.018	4.139	5.225	3.743	nan	nan	0.724	0.391	0.961	0.869	0.520	4.838
2776	chr11	100408293	100409275	+	0	NA	TTS (NM_176830)	TTS (NM_176830)	6035	NM_176830	66180	Mm.4940	NM_176830	ENSMUSG00000006931	P3h4	1110036O03Rik|AI413214|Leprel4|Sc65	prolyl 3-hydroxylase family member 4 (non-enzymatic)	protein-coding	3.602	1.582	0.665	1.413	1.857	1.502	2.396	2.595	1.936	3.441	0.802	0.557	1.978	3.648	2.701	3.303	3.260	1.344	0.826	nan	0.741	1.028	nan	nan	2.604
6410	chr17	25560735	25564131	+	0	NA	Intergenic	Intergenic	8253	NM_011447	20681	Mm.258220	NM_011447	ENSMUSG00000024176	Sox8	-	SRY (sex determining region Y)-box 8	protein-coding	0.555	0.800	0.278	0.380	0.195	0.111	0.563	0.541	0.347	0.164	0.220	0.119	0.611	0.895	0.527	nan	0.371	0.271	4.834	1.835	1.252	3.491	2.924	1.696	0.680
15260	chr9	70074308	70080854	+	0	NA	Intergenic	RSINE1|SINE|B4	-39493	NM_028087	72077	Mm.195555	NM_028087	ENSMUSG00000032226	Gcnt3	2010013H22Rik|2210021I22Rik|2210401J11Rik	glucosaminyl (N-acetyl) transferase 3, mucin type	protein-coding	3.887	3.413	2.447	2.479	2.968	1.783	4.339	3.795	3.967	3.268	2.403	2.276	4.685	5.204	3.612	5.093	3.146	5.030	nan	0.915	1.009	0.928	0.763	0.649	4.001
14666	chr8	122096088	122099533	+	0	NA	Intergenic	L1MEc|LINE|L1	119786	NR_106096	102466915		NR_106096	ENSMUSG00000099140	Mir7237	Gm27482|mmu-mir-7237	microRNA 7237	ncRNA	3.232	3.565	0.998	4.680	1.792	1.540	2.249	3.857	2.891	4.053	2.369	1.740	4.024	3.810	4.651	6.465	3.157	4.534	4.105	1.689	1.528	4.924	2.470	2.993	6.631
9405	chr3	85221003	85222699	+	0	NA	Intergenic	Intergenic	-95668	NR_040542	73283	Mm.489084	NR_040542	ENSMUSG00000099995	1700036G14Rik	-	RIKEN cDNA 1700036G14 gene	ncRNA	3.813	0.524	0.329	1.520	3.032	1.057	3.796	3.670	3.417	3.934	4.659	2.797	7.349	5.100	2.329	nan	5.245	3.883	nan	0.362	0.173	0.384	0.587	0.470	1.110
4443	chr13	117999277	118002750	+	0	NA	Intergenic	Intergenic	-281002	NR_045508	71100	Mm.414841	NR_045508	ENSMUSG00000079048	4933413L06Rik	-	RIKEN cDNA 4933413L06 gene	ncRNA	5.885	2.858	1.512	3.443	2.909	1.419	2.316	3.465	3.351	4.340	3.243	1.397	3.862	7.290	3.381	4.335	3.014	4.396	0.851	0.880	0.758	0.648	0.504	0.572	nan
7747	chr19	37635052	37637104	+	0	NA	intron (NM_175353, intron 18 of 21)	intron (NM_175353, intron 18 of 21)	-49602	NM_001105201	546726	Mm.457750	NM_001105201	ENSMUSG00000062432	Cyp26c1	EG546726	cytochrome P450, family 26, subfamily c, polypeptide 1	protein-coding	4.664	5.074	2.637	4.150	2.292	1.648	5.338	7.008	2.960	2.518	2.650	2.399	3.718	2.951	4.033	3.475	3.902	2.998	1.318	1.768	1.295	1.098	0.882	0.893	3.155
4759	chr14	64771457	64780736	+	0	NA	intron (NM_001081177, intron 31 of 39)	intron (NM_001081177, intron 31 of 39)	123565	NM_001081177	16554	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0.371	1.399	0.589	0.360	0.191	0.080	0.232	0.439	0.385	0.240	0.249	0.375	0.176	0.220	0.314	0.491	0.286	0.484	2.234	nan	1.506	5.347	1.337	0.820	0.806
15822	chrX	137070107	137079205	+	0	NA	intron (NM_146261, intron 5 of 5)	intron (NM_146261, intron 5 of 5)	25062	NM_146261	245622	Mm.260106	NM_146261	ENSMUSG00000042595	Fam199x	-	family with sequence similarity 199, X-linked	protein-coding	7.177	5.981	1.700	7.701	3.492	2.394	3.843	5.655	4.825	7.012	4.672	1.889	5.678	7.076	5.311	6.704	3.721	6.710	1.355	1.591	0.943	2.308	1.017	0.703	6.480
13629	chr7	119839371	119843569	+	0	NA	intron (NM_001004187, intron 12 of 12)	intron (NM_001004187, intron 12 of 12)	47283	NM_001004187	434234	Mm.38237	NM_028129	ENSMUSG00000030924	2610020H08Rik	-	RIKEN cDNA 2610020H08 gene	protein-coding	4.537	1.293	0.481	3.906	5.932	2.820	5.849	7.718	3.620	3.850	5.790	2.896	5.472	6.584	6.716	4.632	3.885	4.788	3.371	2.017	1.259	4.479	2.509	1.268	4.357
9522	chr3	94845249	94847193	+	0	NA	intron (NM_001165948, intron 1 of 18)	intron (NM_001165948, intron 1 of 18)	8654	NM_172683	229584	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	7.913	6.839	4.012	6.600	7.925	4.808	6.758	6.860	5.754	6.390	5.019	3.674	6.564	9.283	7.072	6.766	5.687	6.940	4.056	3.169	2.376	3.957	3.756	3.591	7.395
1728	chr10	111160217	111162077	+	0	NA	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	-3655	NM_001003717	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	nan	0.606	0.493	1.079	3.490	1.385	2.588	1.562	3.161	3.483	4.423	4.255	2.166	3.721	2.241	2.157	2.170	3.007	1.389	1.782	1.234	1.002	1.835	1.267	2.232
12685	chr6	122621972	122623372	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	-3752	NM_139218	73708	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	3.879	0.677	0.470	1.113	1.827	1.688	5.662	4.076	1.931	1.809	0.812	0.269	5.548	5.370	3.094	4.941	5.830	3.420	0.946	0.623	1.163	0.415	nan	0.931	1.884
9232	chr3	36373390	36376272	+	0	NA	Intergenic	Intergenic	100693	NR_105976	102466786		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	10.559	6.122	2.716	7.740	7.209	4.758	13.147	5.816	nan	6.599	3.179	2.379	8.077	12.907	9.159	7.548	5.489	6.864	nan	2.180	1.637	nan	3.170	1.983	11.970
3763	chr12	113901755	113903423	+	0	NA	Intergenic	Lx|LINE|L1	358681	NM_174885	238406	Mm.188683	NM_174885	ENSMUSG00000043945	Adam6a	Adam6|tMDCIV	a disintegrin and metallopeptidase domain 6A	protein-coding	2.364	1.764	0.704	2.350	1.351	1.229	3.715	2.786	2.008	3.322	0.935	0.624	3.170	3.687	4.227	6.222	4.740	2.510	4.543	3.140	3.009	3.315	5.007	3.627	8.618
14388	chr8	84924992	84927651	+	0	NA	intron (NM_019945, intron 7 of 25)	intron (NM_019945, intron 7 of 25)	11032	NM_019945	56527	Mm.154614	NM_019945	ENSMUSG00000053693	Mast1	9430008B02Rik|SAST|SAST170	microtubule associated serine/threonine kinase 1	protein-coding	9.952	5.499	2.537	6.619	2.889	1.004	5.552	7.029	4.975	5.062	6.083	1.474	7.813	7.007	7.749	8.662	7.062	7.425	nan	1.271	0.645	1.177	0.409	0.429	11.909
15840	chrX	147778478	147780710	+	0	NA	Intergenic	B3|SINE|B2	-213399	NM_001198988	666184	Mm.422381	NM_001198988	ENSMUSG00000072931	Gm15080	OTTMUSG00000018964|Ott-like	predicted gene 15080	protein-coding	3.786	5.920	1.571	3.264	2.825	1.251	3.105	4.588	2.198	5.237	3.575	1.837	2.696	4.610	3.266	4.489	2.743	3.319	3.106	2.746	1.692	2.795	3.135	3.327	6.531
14690	chr8	122905499	122907742	+	0	NA	intron (NR_037865, intron 4 of 13)	intron (NR_037865, intron 4 of 13)	58246	NM_007662	12555	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	1.121	1.222	0.289	2.746	1.591	0.822	1.831	3.040	1.010	1.951	1.120	0.558	1.512	2.664	1.800	2.915	1.386	1.966	3.255	4.406	2.711	9.390	3.471	2.190	3.115
8200	chr2	36079446	36080630	+	0	NA	TTS (NM_029309)	TTS (NM_029309)	24022	NM_001083126	16874	Mm.12881	NM_008500	ENSMUSG00000026890	Lhx6	Lhx6.1	LIM homeobox protein 6	protein-coding	2.418	0.868	0.299	2.235	1.074	0.202	1.758	2.146	2.425	1.724	1.003	0.343	3.241	3.504	3.336	6.352	2.307	4.611	0.496	0.660	0.172	0.742	0.224	0.083	4.074
12460	chr6	91422690	91425006	+	0	NA	Intergenic	Intergenic	-12479	NM_009527	22421	Mm.56964	NM_009527	ENSMUSG00000030093	Wnt7a	AI849442|Wnt-7a|px|tw	wingless-type MMTV integration site family, member 7A	protein-coding	7.312	7.502	1.840	8.813	2.663	0.959	6.799	10.486	4.240	7.047	5.522	3.231	9.039	8.586	10.797	15.923	5.622	9.533	nan	0.728	0.888	4.430	1.248	1.261	14.023
9802	chr3	130966952	130975799	+	0	NA	Intergenic	Intergenic	-138922	NM_010703	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	2.984	1.793	1.051	3.450	2.406	1.823	6.021	2.985	2.632	3.210	1.308	1.294	6.296	5.954	4.683	5.114	4.461	4.434	1.252	1.091	0.800	1.168	1.931	1.497	4.309
10539	chr4	128404035	128408827	+	0	NA	intron (NM_001281955, intron 22 of 70)	intron (NM_001281955, intron 22 of 70)	145387	NR_130980	75242	Mm.488254	NR_130980		Hmgb4os	4930546G22Rik	high-mobility group box 4, opposite strand	ncRNA	8.756	9.636	2.154	11.237	6.146	3.455	10.618	8.694	7.472	12.236	9.202	5.709	8.959	11.451	10.528	11.287	4.273	10.246	6.886	3.718	2.696	10.054	4.864	4.291	13.033
3925	chr13	31622882	31624265	+	0	NA	Intergenic	Intergenic	-2243	NM_010225	14238	Mm.125548	NM_010225	ENSMUSG00000038402	Foxf2	FREAC2|Fkh20|LUN	forkhead box F2	protein-coding	3.327	1.313	1.295	1.037	0.735	0.178	1.957	4.278	2.412	2.350	1.611	1.780	3.450	4.227	2.818	4.109	1.697	3.148	1.117	1.145	0.089	2.066	1.019	0.485	3.384
10513	chr4	125779269	125782994	+	0	NA	Intergenic	Intergenic	141179	NR_015560	72395	Mm.112888	NR_015560	ENSMUSG00000085562	2610028E06Rik	BB043107	RIKEN cDNA 2610028E06 gene	ncRNA	7.745	7.117	1.879	10.589	3.343	1.797	6.110	6.743	5.423	8.953	5.736	2.962	6.138	9.608	8.663	10.079	3.822	8.025	5.055	1.996	1.922	6.420	2.005	2.140	12.589
4981	chr14	121777261	121779755	+	0	NA	intron (NM_134074, intron 1 of 52)	intron (NM_134074, intron 1 of 52)	19226	NM_134074	105445	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	9.423	14.288	3.202	14.041	3.540	2.490	8.591	12.049	6.025	15.669	7.776	4.120	8.351	10.952	nan	12.142	4.519	11.400	6.465	1.768	2.586	7.859	4.564	7.118	19.180
12927	chr7	16612274	16614069	+	0	NA	promoter-TSS (NR_136928)	promoter-TSS (NR_136928)	-653	NR_136928	102634559	Mm.421602	NR_136928	ENSMUSG00000100583	Gm29443	-	predicted gene 29443	ncRNA	4.475	2.920	2.313	3.799	2.110	1.606	4.276	8.441	3.309	3.701	2.846	1.496	3.608	5.577	4.359	4.381	3.491	4.635	1.546	0.810	0.751	1.419	1.282	1.052	5.442
11063	chr5	23356005	23357207	+	0	NA	Intergenic	L1_Mus3|LINE|L1	77747	NR_040469	269630	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	4.615	7.075	1.168	nan	1.652	0.565	3.432	1.421	1.779	2.355	1.447	1.426	1.684	2.865	6.048	2.845	1.454	2.168	2.709	1.404	1.384	4.343	1.024	1.183	3.970
15191	chr9	64099822	64104013	+	0	NA	Intergenic	Intergenic	-15230	NM_145835	235435	Mm.436581	NM_145835	ENSMUSG00000032401	Lctl	E130104I05Rik|KLPH	lactase-like	protein-coding	6.173	7.351	2.912	6.340	1.977	0.967	4.318	5.870	5.570	8.598	3.839	2.557	5.477	6.369	nan	6.946	3.360	6.376	nan	1.213	1.439	3.843	1.777	1.665	9.593
14345	chr8	75071637	75073427	+	0	NA	Intergenic	Intergenic	-21086	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	6.976	11.112	2.288	10.773	3.983	3.097	6.595	8.808	nan	11.820	5.726	2.740	7.375	7.469	8.878	11.995	6.256	8.139	3.259	1.609	4.333	7.590	2.581	4.032	17.278
1180	chr10	24115792	24118256	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-7490	NM_001010831	503558	Mm.300923	NM_001010831	ENSMUSG00000037424	Taar9	Gm231|taR-9	trace amine-associated receptor 9	protein-coding	1.541	0.640	0.512	1.024	0.433	0.168	1.761	1.250	1.915	1.362	6.844	4.811	1.817	2.103	1.004	1.281	1.219	1.051	1.057	0.600	0.595	1.222	0.285	0.246	0.625
3374	chr12	70284118	70287090	+	0	NA	intron (NM_053167, intron 3 of 13)	intron (NM_053167, intron 3 of 13)	-22901	NR_037248	100526482		NR_037248	ENSMUSG00000078026	Mir466o	Mir4660|mmu-mir-466o	microRNA 466o	ncRNA	8.850	13.930	2.941	9.613	2.478	1.608	6.773	6.407	5.177	9.575	6.018	3.711	9.215	7.610	11.209	11.773	5.644	9.204	4.315	1.100	2.569	5.508	1.753	2.121	17.738
430	chr1	91436539	91440990	+	0	NA	intron (NM_011066, intron 8 of 22)	intron (NM_011066, intron 8 of 22)	20564	NM_011066	18627	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	0.978	0.465	0.113	0.953	0.688	0.193	0.695	0.819	0.661	0.784	0.492	0.471	0.299	0.474	0.615	0.971	0.509	1.089	4.033	1.803	1.284	4.961	3.113	2.199	0.902
7870	chr19	53494839	53500780	+	0	NA	Intergenic	(TAGA)n|Simple_repeat|Simple_repeat	-31509	NM_001085390	240672	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	4.092	nan	7.344	3.404	2.013	1.246	4.348	nan	2.087	3.064	3.736	2.602	2.452	3.912	nan	3.910	3.968	3.308	0.905	1.555	1.625	1.504	0.938	0.665	nan
11987	chr5	150040411	150041652	+	0	NA	intron (NM_001289566, intron 3 of 16)	intron (NM_001289566, intron 3 of 16)	22356	NM_001289566	140498	Mm.444643	NM_080468	ENSMUSG00000053368	Rxfp2	Gpr106|Great|Lgr8	relaxin/insulin-like family peptide receptor 2	protein-coding	5.915	4.279	2.863	4.377	3.661	2.487	3.844	3.877	nan	4.055	3.084	1.852	2.239	4.914	3.672	4.458	4.123	3.180	3.985	4.123	2.512	3.705	5.067	3.159	3.943
447	chr1	92948335	92955426	+	0	NA	Intergenic	Intergenic	-1290	NR_015525	100037260	Mm.442236	NR_015525	ENSMUSG00000100632	9430060I03Rik	-	RIKEN cDNA 9430060I03 gene	ncRNA	9.808	15.593	5.526	8.641	4.450	2.258	8.408	6.295	5.613	7.552	5.538	2.857	9.500	10.599	8.617	12.655	6.841	8.520	4.063	2.557	1.734	nan	2.543	1.625	10.825
3602	chr12	88206696	88211952	+	0	NA	Intergenic	RLTR48A|LTR|ERV1	-27430	NR_136900	100039315	Mm.426539	NM_001105254	ENSMUSG00000066027	Gm10436	ENSMUSG00000072907	predicted gene 10436	protein-coding	7.952	0.812	0.796	4.368	5.041	4.776	6.864	6.158	4.082	4.681	4.977	3.993	7.567	7.289	6.843	8.118	9.130	5.922	2.995	2.769	3.746	3.827	2.582	2.468	nan
1446	chr10	75807087	75809470	+	0	NA	Intergenic	Intergenic	-9694	NM_008185	14871	Mm.2746	NM_008185	ENSMUSG00000001663	Gstt1	AI255817|Gstt1-1	glutathione S-transferase, theta 1	protein-coding	6.498	7.131	2.711	6.870	2.629	2.556	4.352	5.804	5.017	10.050	4.812	4.227	4.202	6.236	6.809	8.422	5.565	5.755	3.814	1.867	2.695	3.669	2.879	3.361	9.302
3258	chr12	31268807	31270476	+	0	NA	intron (NM_008482, intron 3 of 32)	intron (NM_008482, intron 3 of 32)	4347	NM_008482	16777	Mm.172674	NM_008482	ENSMUSG00000002900	Lamb1	C77966|C80098|C81607|D130003D08Rik|Lamb-1|Lamb1-1	laminin B1	protein-coding	7.869	12.577	4.158	9.056	2.755	1.448	6.386	4.480	4.958	6.476	3.855	3.142	5.827	6.541	8.564	9.340	5.214	9.280	4.890	2.692	1.233	5.955	3.449	2.116	14.428
8762	chr2	146415689	146417267	+	0	NA	intron (NM_001033348, intron 16 of 40)	intron (NM_001033348, intron 16 of 40)	95526	NM_001033348	241694	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	1.714	0.616	0.461	1.820	1.727	1.158	2.625	6.459	2.047	1.309	0.656	0.575	3.319	4.459	1.973	4.062	2.841	1.848	nan	1.013	0.311	0.768	0.606	0.687	2.317
8308	chr2	66469930	66473602	+	0	NA	intron (NR_033495, intron 1 of 3)	Lx4A|LINE|L1	30886	NR_033495	100038743	Mm.330264	NR_033495		Gm13629	OTTMUSG00000013098	predicted gene 13629	ncRNA	0.518	0.335	0.353	0.237	0.156		0.328	0.509	0.180	0.250	0.410	0.109	0.256	0.290	0.106	0.381	0.693	0.340	5.203	3.432	2.195	4.297	6.632	5.661	0.428
6881	chr17	80217883	80219834	+	0	NA	TTS (NM_026351)	TTS (NM_026351)	2944	NM_026351	67737	Mm.158172	NM_026351	ENSMUSG00000046196	Ttc39d	4930560E09Rik	tetratricopeptide repeat domain 39D	protein-coding	2.577	1.201	0.696	1.194	1.401	1.011	4.716	2.981	2.590	1.745	5.044	1.365	2.586	2.451	3.185	4.227	2.370	2.359	1.149	1.160	0.440	1.514	0.440	0.638	2.747
7180	chr18	38367674	38372173	+	0	NA	Intergenic	B3|SINE|B2	-30930	NM_011937	26384	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	7.433	1.466	0.529	7.073	1.815	0.988	6.892	12.722	3.740	5.323	6.183	3.700	5.850	4.825	6.446	4.597	3.935	8.800	5.315	2.370	2.297	6.697	4.615	3.644	10.147
8669	chr2	131000650	131006430	+	0	NA	intron (NM_009730, intron 23 of 28)	B3|SINE|B2	36858	NR_105969	102465606		NR_105969	ENSMUSG00000098686	Mir6973b	Gm27815|mmu-mir-6973b	microRNA 6973b	ncRNA	5.658	4.132	0.720	7.255	2.672	1.124	6.429	9.235	4.249	7.390	4.016	3.186	6.908	5.646	7.716	10.599	6.379	7.221	nan	2.298	2.052	5.242	2.744	2.683	12.553
8961	chr2	164277168	164287943	+	0	NA	Intergenic	Lx8b|LINE|L1	-4248	NM_009300	20941	Mm.1286	NM_009300	ENSMUSG00000016998	Svs4	SVS-IV|Svp-2|Svp-4|Svp2|Svp4	seminal vesicle secretory protein 4	protein-coding	8.638	2.838	0.936	5.964	5.480	3.859	8.186	8.257	4.933	7.282	3.527	3.704	8.881	9.248	7.266	8.841	8.134	7.082	nan	1.333	1.683	1.525	1.824	2.168	10.155
6303	chr17	5549388	5555781	+	0	NA	intron (NM_146073, intron 1 of 8)	RSINE1|SINE|B4	59984	NM_146073	224454	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.368	0.735	0.349	0.300	0.165	0.116	0.347	0.271	0.260	0.329	0.273	0.131	0.191	0.233	0.216	nan	nan	0.436	nan	1.139	0.690	5.460	1.173	0.690	0.659
6594	chr17	35451356	35452540	+	0	NA	Intergenic	MurERV4-int|LTR|ERVK	12781	NM_001201460	110558	Mm.431282	NM_001201460		H2-Q9	H-2Q9|Ped|Qa-2|Qa-9|Qa9	histocompatibility 2, Q region locus 9	protein-coding	1.219	0.654	0.248	0.437	1.022	0.872	1.209	0.443	0.501	0.428	0.072	0.332	2.652	3.597	0.450	0.676	0.353	0.295	0.501	0.381	0.201	0.099	0.431	0.392	1.651
438	chr1	92731347	92736989	+	0	NA	Intergenic	Intergenic	-85327	NM_153114	260301	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	2.928	1.245	0.610	3.372	2.283	1.077	1.785	2.761	3.376	4.013	0.843	0.693	4.423	6.827	3.718	6.187	3.805	3.245	0.615	0.536	0.401	nan	0.383	0.168	5.122
14351	chr8	77556859	77564644	+	0	NA	intron (NM_001081240, intron 3 of 11)	intron (NM_001081240, intron 3 of 11)	11354	NM_001081240	102182	Mm.197630	NM_178903	ENSMUSG00000037134	Prmt9	AI931714|Prmt10	protein arginine methyltransferase 9	protein-coding	2.880	nan	1.054	4.103	2.291	1.400	nan	nan	nan	2.515	1.575	0.784	2.747	4.326	3.713	4.758	2.837	3.782	2.711	1.322	1.204	6.243	1.635	1.453	nan
5399	chr15	78277165	78281600	+	0	NA	Intergenic	Intergenic	5467	NR_106138	102466845		NR_106138	ENSMUSG00000099059	Mir7676-2	Gm27790|mmu-mir-7676-2	microRNA 7676-2	ncRNA	7.043	6.219	2.484	4.920	3.051	1.525	6.121	9.610	3.593	4.362	nan	2.716	6.326	7.570	6.943	6.186	4.477	5.285	2.425	1.295	1.080	nan	1.098	0.897	6.598
1022	chr1	191990923	192002845	+	0	NA	TTS (NM_011633)	TTS (NM_011633)	1750	NR_039566	100628582		NR_039566	ENSMUSG00000093003	Mir3473c	mmu-mir-3473c	microRNA 3473c	ncRNA	0.587	0.458	0.339	0.529	0.280	0.175	0.472	1.878	0.371	0.493	0.161	0.196	0.289	0.467	0.621	nan	0.404	0.469	8.011	5.292	4.031	9.890	6.724	6.131	0.539
4569	chr14	31360719	31366903	+	0	NA	intron (NM_009796, intron 13 of 20)	B4A|SINE|B4	27087	NM_009796	12339	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	4.945	5.059	1.767	5.276	2.478	1.800	2.721	7.601	2.981	4.434	3.670	2.392	2.136	6.329	4.755	nan	3.215	nan	2.732	1.589	1.526	nan	1.846	1.734	7.517
5861	chr16	19676983	19683950	+	0	NA	intron (NM_177356, intron 3 of 5)	L1_Mus3|LINE|L1	25899	NM_177356	239739	Mm.258059	NM_177356	ENSMUSG00000041247	Lamp3	1200002D17Rik|Cd208|DC-LAMP|DCLAMP|LAMP|TSC403	lysosomal-associated membrane protein 3	protein-coding	1.251	0.247	0.253	1.035	5.129	5.415	1.184	1.154	1.288	nan	0.268	0.218	0.476	1.158	0.735	nan	1.737	1.437	0.439	0.631	1.053	0.205	0.700	1.214	0.629
15241	chr9	67324979	67326127	+	0	NA	intron (NM_001081242, intron 27 of 57)	(TG)n|Simple_repeat|Simple_repeat	-88827	NR_029576	387185		NR_029576	ENSMUSG00000076379	Mir190a	Mir190|Mirn190|mir-190|mir-190a|mmu-mir-190|mmu-mir-190a	microRNA 190a	ncRNA	2.446	0.455	0.225	1.348	0.802	0.558	1.202	2.442	2.544	3.306	1.810	1.045	3.398	3.250	2.854	2.030	1.620	2.815	nan	1.289	0.360	1.639	2.411	1.211	2.690
10014	chr4	43056217	43060184	+	0	NA	promoter-TSS (NM_021468)	promoter-TSS (NM_021468)	-753	NM_021468	22249	Mm.128892	NM_021468	ENSMUSG00000028456	Unc13b	Munc13-1|Munc13-2|Unc13a|Unc13h1|Unc13h2	unc-13 homolog B (C. elegans)	protein-coding	8.696	nan	3.179	5.747	4.111	2.368	4.335	6.027	4.296	4.952	4.789	3.140	3.215	7.675	4.183	5.806	4.469	nan	1.978	2.583	2.274	nan	2.176	1.768	6.563
4395	chr13	110103672	110110419	+	0	NA	intron (NM_023852, intron 3 of 4)	intron (NM_023852, intron 3 of 4)	173161	NM_023852	67295	Mm.151600	NM_023852	ENSMUSG00000021700	Rab3c	2700062I01Rik|3110015B08Rik|3110037E15Rik|AI850886	RAB3C, member RAS oncogene family	protein-coding	5.373	nan	0.319	5.192	7.053	5.243	7.001	6.134	nan	8.666	3.842	3.049	9.293	10.380	7.099	8.582	5.221	6.969	1.834	1.178	0.860	nan	1.805	1.649	5.809
953	chr1	182833346	182839620	+	0	NA	intron (NM_144796, intron 2 of 7)	ID_B1|SINE|B4	71577	NM_144796	96935	Mm.331052	NM_144796	ENSMUSG00000038576	Susd4	AI848994|E430021N18Rik|N28096	sushi domain containing 4	protein-coding	2.887	11.363	5.073	2.941	0.893	0.661	2.076	2.037	1.855	2.037	2.263	1.218	2.289	nan	2.576	3.950	2.402	2.559	1.997	1.241	1.394	2.550	1.867	1.764	2.992
5515	chr15	84543307	84545821	+	0	NA	Intergenic	CT-rich|Low_complexity|Low_complexity	13259	NM_177630	223732	Mm.6471	NM_177630	ENSMUSG00000055745	Ldoc1l	BC058638|Mar6|Mart6	leucine zipper, down-regulated in cancer 1-like	protein-coding	7.291	2.030	0.815	6.676	3.165	2.506	7.950	13.526	5.512	4.767	6.987	3.924	8.842	6.537	8.343	7.342	5.922	7.045	nan	1.146	1.199	nan	1.695	1.401	5.746
9380	chr3	69177833	69179638	+	0	NA	Intergenic	MLT2B2|LTR|ERVL	-43684	NM_027843	71619	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	2.691	3.561	2.269	2.950	2.011	1.129	3.571	3.666	3.669	3.754	3.143	2.733	6.771	6.736	5.395	3.896	6.130	5.059	3.567	2.505	1.978	3.087	2.563	1.630	4.827
8362	chr2	73287434	73298695	+	0	NA	intron (NM_025854, intron 7 of 9)	B4A|SINE|B4	19528	NM_025854	66935	Mm.292140	NM_025854	ENSMUSG00000041777	Cir1	1700023B02Rik|2810021A19Rik|Cicr|Cir	corepressor interacting with RBPJ, 1	protein-coding	nan	12.825	6.136	nan	1.330	0.547	0.931	1.189	1.335	1.398	0.721	0.536	0.894	0.995	nan	nan	1.280	1.547	0.808	1.538	0.858	0.651	0.698	0.475	nan
5991	chr16	31458517	31463827	+	0	NA	Intergenic	Intergenic	32419	NM_001122683	71911	Mm.293470	NM_175177	ENSMUSG00000046598	Bdh1	2310032J20Rik|AI327223|Bdh	3-hydroxybutyrate dehydrogenase, type 1	protein-coding	4.072	0.733	0.197	2.318	3.113	1.459	3.990	6.895	2.042	2.466	2.222	1.514	4.465	4.769	4.830	6.332	5.001	5.893	1.234	0.683	0.705	1.037	nan	0.732	7.496
6031	chr16	34033444	34050410	+	0	NA	intron (NM_177357, intron 37 of 59)	intron (NM_177357, intron 37 of 59)	-74924	NM_009471	22247	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	nan	1.973	1.153	1.955	1.422	0.813	4.346	2.737	2.215	2.471	0.320	0.464	5.016	nan	4.447	6.948	4.737	5.379	0.840	0.662	0.349	1.191	0.493	0.392	6.442
6201	chr16	91600872	91602536	+	0	NA	Intergenic	MTE2a|LTR|ERVL-MaLR	-4024	NM_030018	77975	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	4.021	nan	0.517	2.928	1.400	0.893	2.660	2.562	3.952	4.014	1.113	0.688	6.063	6.266	5.422	7.086	4.624	4.478	0.815	0.725	0.420	nan	0.625	0.477	5.325
1560	chr10	85799522	85810108	+	0	NA	Intergenic	Intergenic	-67016	NM_133993	103136	Mm.18834	NM_133993	ENSMUSG00000001785	Pwp1	2310058A11Rik|2610205J09Rik|AI098170|AL022879|AV083409|AW550690	PWP1 homolog, endonuclein	protein-coding	4.071	1.056	0.448	4.152	1.759	0.727	3.259	3.190	3.188	3.079	2.317	1.482	3.125	3.605	3.591	6.075	3.586	4.899	1.090	0.693	0.336	nan	nan	0.396	6.249
6968	chr17	91490253	91492088	+	0	NA	Intergenic	L1Md_T|LINE|L1	-398368	NM_020252	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.323	0.268	0.417	0.154	0.125	0.128	0.422	0.388	nan	0.222	0.266	0.044	0.132	0.198	0.132	0.416	0.691	0.409	6.139	3.718	2.931	3.977	8.390	6.489	0.184
7225	chr18	47489653	47493629	+	0	NA	Intergenic	Intergenic	38973	NR_033453	77668	Mm.98433	NR_033453		9130209A04Rik	-	RIKEN cDNA 9130209A04 gene	ncRNA	3.957	1.889	1.009	4.869	2.690	1.435	1.320	1.431	2.063	1.895	0.873	0.645	1.126	1.845	1.515	2.111	1.392	3.314	0.822	1.396	0.446	1.024	0.575	0.308	2.281
15736	chrX	68809208	68810485	+	0	NA	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	48007	NM_001166619	207854	Mm.284945	NM_174993	ENSMUSG00000062170	Fmr1nb	3830422N12Rik|NY-SAR-35|NYSAR35	fragile X mental retardation 1 neighbor	protein-coding	4.602	6.223	1.512	6.205	3.237	3.651	5.090	4.951	3.827	15.092	3.752	2.128	5.581	6.731	6.736	8.355	3.332	7.995	4.986	0.897	4.149	6.045	3.449	9.782	15.573
4820	chr14	70732585	70734769	+	0	NA	intron (NM_023045, intron 1 of 27)	L1Md_T|LINE|L1	32951	NM_023045	65246	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|mKIAA0745	exportin 7	protein-coding	3.712	2.763	0.869	2.232	2.016	0.749	2.315	6.321	2.204	2.291	6.341	3.907	1.653	3.677	1.667	1.824	1.677	2.005	0.987	nan	0.775	3.739	0.799	0.199	1.324
5553	chr15	88527265	88530916	+	0	NA	Intergenic	Lx2B2|LINE|L1	-71212	NM_027306	70073	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	2.620	0.764	0.433	nan	2.378	1.743	3.681	2.614	nan	1.637	0.366	0.397	5.688	5.885	nan	nan	nan	nan	nan	0.586	0.590	nan	0.591	0.707	nan
1762	chr10	116581882	116587527	+	0	NA	Intergenic	Intergenic	-3193	NM_001037846	72068	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	6.627	4.010	1.537	5.479	3.612	2.019	2.719	4.537	3.566	6.141	2.881	1.838	3.906	6.888	4.538	5.261	4.348	4.808	1.845	1.358	1.287	1.846	1.453	1.325	6.483
260	chr1	65215493	65221331	+	0	NA	intron (NM_011086, intron 9 of 41)	intron (NM_011086, intron 9 of 41)	31727	NM_001310624	18711	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE finger containing	protein-coding	5.142	0.929	0.758	1.521	1.325	0.971	3.189	4.039	2.498	1.759	1.763	1.945	2.960	2.733	3.549	6.171	5.111	nan	0.874	0.694	0.654	0.580	1.282	1.048	3.033
5172	chr15	54402378	54408877	+	0	NA	Intergenic	Intergenic	-5147	NM_173422	239447	Mm.82400	NM_173422	ENSMUSG00000038591	Colec10	CL-L1	collectin sub-family member 10	protein-coding	6.253	0.536	0.366	nan	3.183	1.794	6.851	nan	nan	nan	3.065	2.401	6.418	5.666	5.559	6.668	4.824	7.019	2.483	1.617	1.170	2.890	1.903	1.882	7.224
2061	chr11	31635525	31641696	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	33252	NM_001024919	69556	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	5.334	1.107	0.448	nan	3.258	1.416	6.481	5.626	5.296	7.506	1.016	1.125	7.675	8.136	7.204	9.462	4.227	7.817	2.574	1.138	0.754	3.364	2.598	1.540	7.626
3080	chr11	119315724	119318578	+	0	NA	exon (NM_130886, exon 3 of 22)	exon (NM_130886, exon 3 of 22)	2364	NM_130886	170720	Mm.130832	NM_130886	ENSMUSG00000013483	Card14	Bimp2|CARMA2	caspase recruitment domain family, member 14	protein-coding	5.343	nan	0.465	3.235	1.238	0.404	4.597	3.888	4.541	6.030	1.080	0.461	6.597	6.744	4.510	7.706	4.627	5.989	0.541	nan	0.581	0.668	0.371	0.176	6.786
14944	chr9	32322596	32324761	+	0	NA	intron (NM_010605, intron 2 of 3)	intron (NM_010605, intron 2 of 3)	20559	NM_010605	16521	Mm.69472	NM_010605	ENSMUSG00000032034	Kcnj5	GIRK4|Kir3.4	potassium inwardly-rectifying channel, subfamily J, member 5	protein-coding	4.579	5.840	3.579	3.213	1.900	0.932	1.301	1.235	2.050	1.685	2.016	0.793	1.682	2.069	1.411	nan	1.728	2.494	4.327	4.926	2.918	5.533	2.092	0.797	2.441
10467	chr4	120485315	120493164	+	0	NA	intron (NM_001159630, intron 9 of 17)	intron (NM_001159630, intron 9 of 17)	-42992	NM_177570	194219	Mm.29788	NM_177570	ENSMUSG00000047518	Slfnl1	4933406A14Rik	schlafen like 1	protein-coding	6.480	2.230	1.625	5.081	3.747	2.274	3.403	3.943	4.754	4.704	3.393	1.690	5.251	6.162	5.235	5.846	3.831	6.349	2.778	2.326	1.311	3.005	1.575	1.126	4.180
1144	chr10	19883396	19885417	+	0	NA	intron (NM_001161825, intron 7 of 8)	intron (NM_001161825, intron 7 of 8)	23268	NM_008822	18634	Mm.338363	NM_008822	ENSMUSG00000020003	Pex7	MmPEX7	peroxisomal biogenesis factor 7	protein-coding	4.684	0.618	0.398	2.034	2.972	1.071	2.748	3.321	nan	3.056	2.636	0.964	4.557	4.535	3.245	4.091	4.672	3.641	1.446	0.910	0.583	0.840	1.295	0.961	nan
15126	chr9	57609750	57614107	+	0	NA	intron (NM_199222, intron 7 of 12)	intron (NM_199222, intron 7 of 12)	-5647	NM_146223	235415	Mm.35242	NM_146223	ENSMUSG00000039714	Cplx3	BC016632|CpxIII|ERGIC-53L|ERGL|Lamn1l|Lman1l	complexin 3	protein-coding	7.725	11.531	2.332	11.587	2.652	1.346	5.288	7.271	5.641	12.201	5.670	3.161	7.305	9.140	8.879	10.002	3.431	9.897	6.101	1.784	1.919	8.045	2.619	3.156	16.594
11560	chr5	111652082	111658008	+	0	NA	Intergenic	Intergenic	73484	NR_015546	330164	Mm.193276	NM_177875	ENSMUSG00000052848	C130026L21Rik	-	RIKEN cDNA C130026L21 gene	ncRNA	0.845	0.850	0.467	2.312	0.240	0.125	nan	0.219	0.633	0.968	0.724	0.209	0.327	0.442	0.868	1.065	0.273	1.439	4.626	1.026	1.177	4.385	2.129	1.792	1.366
12279	chr6	59374449	59377281	+	0	NA	intron (NM_183183, intron 1 of 1)	MTC|LTR|ERVL-MaLR	50425	NM_183183	243385	Mm.138080	NM_183183	ENSMUSG00000045441	Gprin3	C030038J10Rik|C730021L23	GPRIN family member 3	protein-coding	7.173	3.559	1.107	6.795	4.036	1.639	8.780	5.858	5.039	7.815	3.547	1.370	10.292	10.701	10.129	13.884	7.897	9.554	nan	1.705	1.073	3.622	3.195	1.605	9.935
9609	chr3	101364548	101367421	+	0	NA	Intergenic	Intergenic	-11141	NM_207205	78908	Mm.257997	NM_207205	ENSMUSG00000042035	Igsf3	1700016K10Rik|2810035F16Rik|4833439O17Rik|mKIAA0466	immunoglobulin superfamily, member 3	protein-coding	3.416	0.551	0.399	2.144	1.523	0.635	5.830	3.330	4.948	5.740	nan	2.289	6.200	6.282	6.109	4.725	2.155	2.664	2.675	0.942	0.552	3.854	1.824	1.020	5.418
1723	chr10	111055773	111061531	+	0	NA	Intergenic	Intergenic	-48586	NM_172554	320150	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|Hip14	zinc finger, DHHC domain containing 17	protein-coding	5.723	0.889	0.438	2.825	5.695	2.795	5.454	3.378	6.087	6.620	6.216	5.338	5.738	8.300	6.253	6.670	5.095	6.568	1.059	0.960	0.841	1.219	1.141	0.893	6.841
6750	chr17	56414921	56417140	+	0	NA	intron (NM_001252455, intron 23 of 27)	RLTR11A|LTR|ERVK	2879	NR_105943	102465590		NR_105943	ENSMUSG00000098339	Mir6977	Gm27922|mmu-mir-6977	microRNA 6977	ncRNA	8.338	8.957	6.153	7.395	8.687	7.431	9.157	7.571	5.329	6.801	6.071	3.771	4.895	10.097	8.463	9.623	8.942	6.562	3.881	5.527	5.182	3.884	6.099	7.191	9.246
2047	chr11	29591667	29594246	+	0	NA	Intergenic	RSINE1|SINE|B4	-44916	NM_001033865	78294	Mm.180003	NM_024277	ENSMUSG00000020460	Rps27a	0610006J14Rik|Uba52|Ubb|Ubc	ribosomal protein S27A	protein-coding	6.792	8.149	2.482	8.550	5.684	5.680	6.550	6.248	3.635	8.995	7.425	3.597	5.231	6.968	6.988	7.457	5.090	6.041	3.862	2.058	3.247	4.940	2.685	4.288	10.102
12407	chr6	87251877	87255265	+	0	NA	intron (NM_054041, intron 10 of 17)	intron (NM_054041, intron 10 of 17)	82204	NM_054041	69538	Mm.232525	NM_054041	ENSMUSG00000033420	Antxr1	2310008J16Rik|2810405N18Rik|Antrx1|Tem8	anthrax toxin receptor 1	protein-coding	4.210	0.936	0.595	2.951	3.478	1.550	6.011	3.703	2.626	3.217	1.574	0.811	5.081	6.171	4.704	7.316	4.208	4.356	nan	0.533	0.677	0.549	0.640	0.140	4.772
11020	chr5	15240291	15242327	+	0	NA	Intergenic	Intergenic	-208302	NM_182957	66773	Mm.368256	NM_182957	ENSMUSG00000091897	Gm17019	-	predicted gene 17019	protein-coding	0.442	0.387	0.313	0.660	0.294	0.240	0.471	0.370	0.308	0.328	0.366	0.644	0.143	0.455	0.167	0.440	0.316	0.407	5.814	6.528	5.927	5.170	9.630	7.861	0.217
10654	chr4	133388763	133389897	+	0	NA	intron (NM_016981, intron 1 of 11)	intron (NM_016981, intron 1 of 11)	19554	NR_039582	100628620		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	nan	0.475	0.669	2.364	1.376	1.663	2.393	1.730	nan	2.127	1.064	0.696	2.058	4.272	2.511	2.700	1.375	nan	1.153	0.241	0.341	0.665	nan	1.199	2.151
144	chr1	40555972	40560350	+	0	NA	Intergenic	Intergenic	-22066	NM_177084	110895	Mm.108602	NM_177084	ENSMUSG00000026065	Slc9a4	AW990558|D730009J23Rik|NHE4	solute carrier family 9 (sodium/hydrogen exchanger), member 4	protein-coding	9.105	1.206	0.737	4.456	4.356	1.838	8.558	6.045	6.370	6.268	3.456	2.119	11.815	7.936	7.216	12.876	8.921	7.371	0.516	1.006	0.364	0.391	0.503	0.395	7.841
8726	chr2	141099641	141100844	+	0	NA	intron (NM_001013802, intron 5 of 18)	intron (NM_001013802, intron 5 of 18)	-428766	NM_178382	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	2.719	0.628	0.693	1.984	1.421	1.256	2.501	1.885	2.141	2.616	2.956	1.032	3.700	3.968	2.373	3.436	3.551	3.601	1.063	0.410	0.233	0.676	0.460	0.315	1.492
14003	chr8	11378498	11387982	+	0	NA	intron (NM_009932, intron 4 of 47)	intron (NM_009932, intron 4 of 47)	-70414	NM_009931	12826	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	3.980	1.718	0.852	5.337	4.797	2.602	2.494	2.908	3.192	3.752	1.468	1.046	2.507	4.043	4.146	6.258	3.017	5.184	0.862	0.779	0.465	1.543	0.490	0.361	4.896
3696	chr12	106754421	106767350	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-44561	NR_015512	71033	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA	4.426	0.793	0.609	nan	2.657	1.609	5.431	nan	nan	6.090	0.991	0.911	5.811	6.357	3.118	1.244	0.957	2.820	0.874	0.837	0.825	1.216	0.679	0.703	nan
5787	chr16	10660858	10667649	+	0	NA	intron (NM_001204229, intron 18 of 22)	intron (NM_001204229, intron 18 of 22)	118914	NM_001204229	74374	Mm.159176	NM_177562	ENSMUSG00000068663	Clec16a	4932416N17Rik|curt|mKIAA0350	C-type lectin domain family 16, member A	protein-coding	4.174	4.489	1.274	3.094	1.337	0.398	nan	3.923	2.230	2.126	0.782	0.729	3.571	3.351	4.090	5.154	1.926	5.538	3.221	1.188	0.718	5.599	1.400	0.717	5.656
13798	chr7	136897491	136905754	+	0	NA	intron (NM_008598, intron 1 of 4)	Lx2B2|LINE|L1	7011	NM_008598	17314	Mm.440219	NM_008598	ENSMUSG00000054612	Mgmt	AGT|AI267024|Agat	O-6-methylguanine-DNA methyltransferase	protein-coding	6.280	nan	0.622	4.432	4.601	2.016	6.351	7.787	nan	7.123	3.018	1.521	9.224	9.842	8.444	8.729	7.345	8.458	1.193	1.171	0.689	1.188	0.879	0.592	7.631
906	chr1	177621873	177623810	+	0	NA	Intergenic	MIR|SINE|MIR	20102	NR_037994	75589	Mm.86666	NR_037994	ENSMUSG00000101746	2310043L19Rik	-	RIKEN cDNA 2310043L19 gene	ncRNA	10.029	6.385	2.389	6.033	3.636	1.433	7.550	6.836	2.700	6.280	3.020	2.656	4.914	6.419	6.233	10.677	8.136	4.540	5.453	5.882	3.273	6.967	8.849	6.861	8.432
1349	chr10	61798273	61804175	+	0	NA	Intergenic	RMER15|LTR|ERVL	-17360	NM_207000	404634	Mm.272870	NM_207000	ENSMUSG00000020086	H2afy2	macroH2A2	H2A histone family, member Y2	protein-coding	8.150	5.709	1.482	7.679	6.289	4.895	5.529	7.185	5.886	7.449	6.039	4.757	5.799	8.873	6.307	8.580	6.190	6.931	5.227	2.792	3.002	4.945	3.904	4.335	10.934
177	chr1	53831225	53833726	+	0	NA	intron (NM_001001883, intron 24 of 28)	intron (NM_001001883, intron 24 of 28)	-16949	NR_106149	102465783		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	4.258	11.275	5.429	3.797	1.723	0.629	1.769	1.712	3.607	3.251	2.765	1.770	2.230	2.758	2.854	3.082	3.214	4.353	2.055	2.181	0.783	0.563	0.924	0.910	1.404
7969	chr2	12845331	12846680	+	0	NA	Intergenic	Intergenic	-78036	NM_008961	19212	Mm.229322	NM_008961	ENSMUSG00000026730	Pter	AI790318|Mpr56-1	phosphotriesterase related	protein-coding	6.017	5.392	2.137	3.748	1.601	1.072	3.779	8.218	2.826	3.772	2.486	2.292	5.092	4.472	4.609	6.847	3.789	5.869	0.498	1.233	1.095	1.034	0.656	0.335	5.882
9509	chr3	94381755	94383846	+	0	NA	intron (NR_121656, intron 1 of 9)	intron (NR_121656, intron 1 of 9)	5368	NR_121656	19885	Mm.4372	NM_011281	ENSMUSG00000028150	Rorc	Nr1f3|RORgamma|TOR|Thor	RAR-related orphan receptor gamma	protein-coding	4.316	0.663	0.470	2.322	1.529	0.650	3.561	3.938	2.487	1.979	nan	0.682	7.310	6.641	5.819	5.746	5.339	3.971	1.378	0.642	0.195	1.438	0.764	0.390	3.454
2213	chr11	54545856	54547814	+	0	NA	intron (NM_175258, intron 3 of 27)	intron (NM_175258, intron 3 of 27)	23990	NM_001252496	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	2.350	7.160	5.576	2.414	2.011	2.016	2.188	2.087	1.673	1.851	1.278	0.889	1.227	1.555	1.853	1.511	1.321	2.905	nan	1.163	1.018	0.674	0.968	1.146	nan
8035	chr2	26413897	26414804	+	0	NA	intron (NM_153125, intron 28 of 29)	(CA)n|Simple_repeat|Simple_repeat	-5131	NR_110957	64436	Mm.330070	NM_033134	ENSMUSG00000026925	Inpp5e	1200002L24Rik|72kDa|mKIAA0123	inositol polyphosphate-5-phosphatase E	protein-coding	2.309	0.957	0.494	2.504	3.212	3.777	4.031	2.681	2.988	1.888	1.918	1.741	2.462	4.141	3.844	3.586	2.956	3.098	0.868	0.841	0.986	1.038	1.258	0.757	3.226
3346	chr12	57340892	57343735	+	0	NA	intron (NM_001164370, intron 7 of 9)	L1MD3|LINE|L1	111888	NM_001164370	73490	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	2.477	nan	0.192	1.215	0.561	0.303	1.853	1.560	1.306	1.651	1.136	0.475	2.405	2.372	2.458	nan	1.708	3.125	5.538	1.633	1.170	4.123	2.457	1.339	2.763
2940	chr11	109310423	109311966	+	0	NA	Intergenic	Intergenic	-13013	NM_011268	19739	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	0.595	0.935	0.929	nan	0.913	0.475	0.463	0.445	nan	nan	0.429	0.663	0.568	0.857	0.715	0.784	1.475	nan	1.724	5.807	5.519	nan	1.469	1.247	1.143
3072	chr11	118986894	118990649	+	0	NA	exon (NM_001030291, exon 2 of 6)	exon (NM_001030291, exon 2 of 6)	583	NM_001030291	238011	Mm.244114	NM_001030291	ENSMUSG00000046697	Enpp7	Alk-SMase|Gm254	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding	6.339	6.742	1.538	5.245	4.556	2.704	7.433	8.076	4.173	5.879	5.771	3.393	6.084	9.590	6.783	9.224	4.643	6.428	1.596	nan	1.148	2.488	1.056	0.714	9.048
11835	chr5	137431915	137436400	+	0	NA	exon (NM_011741, exon 35 of 88)	exon (NM_011741, exon 35 of 88)	42907	NM_011741	22635	Mm.7984	NM_011741	ENSMUSG00000079173	Zan	Zan-test	zonadhesin	protein-coding	3.774	0.903	0.431	2.742	1.286	0.994	3.852	4.990	2.153	2.253	1.209	1.334	4.558	5.198	5.685	4.627	4.816	4.406	1.281	0.927	1.159	1.008	nan	0.559	4.464
4345	chr13	102320284	102321530	+	0	NA	Intergenic	Intergenic	-372651	NM_008533	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly78|RP105	CD180 antigen	protein-coding	2.029	1.313	1.091	1.622	1.450	0.492	0.980	1.688	1.441	1.337	0.757	0.569	1.769	2.831	1.724	1.704	nan	nan	1.214	2.089	1.643	2.307	0.885	0.441	1.861
6601	chr17	35912405	35915332	+	0	NA	intron (NM_001347380, intron 1 of 3)	intron (NM_001347380, intron 1 of 3)	2501	NM_025878	66973	Mm.29484	NM_025878	ENSMUSG00000024436	Mrps18b	2400002C15Rik	mitochondrial ribosomal protein S18B	protein-coding	6.415	0.871	0.627	5.201	6.604	4.018	7.355	7.571	5.528	6.031	5.643	3.770	5.622	9.367	7.377	7.557	4.940	6.515	3.350	1.928	1.782	3.729	2.306	1.786	7.634
15378	chr9	89940805	89944892	+	0	NA	intron (NM_011245, intron 2 of 26)	intron (NM_011245, intron 2 of 26)	33073	NM_001039655	19417	Mm.44561	NM_011245	ENSMUSG00000032356	Rasgrf1	AI844718|CDC25|CDC25Mm|Gnrp|Grf1|Grfbeta|P190-A|Ras-GRF1|p190|p190RhoGEF	RAS protein-specific guanine nucleotide-releasing factor 1	protein-coding	4.216	0.718	0.614	3.257	5.971	4.814	4.913	4.014	5.035	5.542	2.205	3.544	5.549	7.432	3.388	4.499	5.139	4.981	0.765	1.515	1.334	0.434	1.280	1.095	5.672
14606	chr8	113369470	113372106	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	-146494	NR_110476	78048	Mm.252797	NR_110476		4930571O06Rik	-	RIKEN cDNA 4930571O06 gene	ncRNA	9.819	11.689	4.832	8.942	4.128	1.824	6.139	10.591	6.386	5.741	7.756	5.277	10.311	9.044	10.418	11.304	7.874	8.855	5.601	3.165	2.223	8.978	3.418	1.955	11.343
13231	chr7	56691164	56694581	+	0	NA	Intergenic	RLTR6-int|LTR|ERV1	453101	NM_021879	18431	Mm.137052	NM_021879	ENSMUSG00000030450	Oca2	D7H15S12|D7Icr28RN|D7Nic1|p|p<cas>	oculocutaneous albinism II	protein-coding	nan	0.696	0.267	3.805	1.447	0.809	5.182	3.432	3.092	4.297	2.526	1.312	7.051	5.922	3.730	nan	4.552	4.833	0.795	0.655	0.242	0.586	0.335	0.473	6.120
3213	chr12	17730543	17733217	+	0	NA	intron (NM_016677, intron 1 of 3)	MTEa|LTR|ERVL-MaLR	41066	NM_016677	53602	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	6.829	3.993	1.341	5.751	4.623	2.103	6.249	5.870	4.266	5.922	1.779	1.390	4.353	7.465	3.988	4.120	2.443	6.909	1.002	1.155	1.146	1.320	1.204	0.724	6.308
7316	chr18	64202832	64207011	+	0	NA	intron (NR_045366, intron 2 of 5)	L1Md_F2|LINE|L1	-49438	NM_009182	20451	Mm.252110	NM_009182	ENSMUSG00000056812	St8sia3	AI847333|ST8SiaIII|Siat8c	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3	protein-coding	2.473	0.537	0.514	0.546	0.250	0.088	3.038	5.241	1.556	1.248	1.338	1.481	1.607	1.408	2.077	1.081	0.967	0.999	1.604	0.451	0.440	1.973	1.162	0.867	1.136
13548	chr7	112926518	112928013	+	0	NA	Intergenic	Intergenic	-26697	NM_175279	78748	Mm.349943	NM_175279	ENSMUSG00000098132	Rassf10	4632411J06Rik	Ras association (RalGDS/AF-6) domain family (N-terminal) member 10	protein-coding	9.219	5.541	3.142	4.224	5.791	1.966	3.427	1.951	2.514	4.871	1.990	1.859	1.741	5.197	2.597	nan	2.629	2.684	nan	3.655	1.340	0.715	2.145	0.861	4.272
9943	chr4	11823486	11824411	+	0	NA	Intergenic	Intergenic	65791	NM_019753	12557	Mm.33402	NM_019753	ENSMUSG00000028217	Cdh17	HPT-1|HPT-1/LI	cadherin 17	protein-coding	2.812	1.769	0.697	2.806	2.010	1.023	1.377	2.764	3.702	3.908	0.885	0.858	1.886	2.989	3.328	3.663	1.355	4.676	3.020	nan	0.787	4.853	2.062	1.127	1.888
15235	chr9	66742257	66747748	+	0	NA	intron (NM_001306148, intron 2 of 9)	MIR3|SINE|MIR	31316	NM_001306148	76459	Mm.277921	NM_178396	ENSMUSG00000032373	Car12	2310047E01Rik|AI314958|CA-XII|Ca12	carbonic anhydrase 12	protein-coding	2.909	8.832	4.768	2.608	1.233	0.449	0.663	0.948	1.698	1.550	1.870	0.949	0.785	1.488	nan	1.770	1.391	2.018	nan	1.566	0.715	0.948	0.683	0.337	1.426
15143	chr9	59580117	59582517	+	0	NA	intron (NM_175235, intron 1 of 11)	intron (NM_175235, intron 1 of 11)	2980	NM_175235	76183	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	3.636	1.049	0.541	1.943	1.735	0.658	2.169	nan	1.723	2.254	3.678	1.857	2.489	4.867	2.123	3.496	3.031	2.642	1.450	2.300	1.335	2.434	1.177	0.689	3.054
13964	chr8	3220385	3226052	+	0	NA	intron (NM_010568, intron 2 of 20)	RSINE1|SINE|B4	56399	NM_010568	16337	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	7.361	1.418	0.398	3.282	2.695	1.435	4.103	6.223	3.859	4.365	2.420	1.103	5.522	5.635	3.950	5.988	4.544	4.971	0.949	1.299	1.030	2.025	0.738	0.568	5.452
12413	chr6	87817011	87819965	+	0	NA	TTS (NM_133934)	TTS (NM_133934)	-6324	NR_104478	69834	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	3.907	0.938	0.806	nan	2.229	0.945	4.760	8.073	1.299	1.657	1.392	2.006	3.101	6.459	3.986	5.563	4.949	nan	3.183	1.986	0.863	3.027	2.015	1.517	3.300
11572	chr5	113443035	113444889	+	0	NA	Intergenic	Intergenic	86668	NM_001012726	503692	Mm.348794	NM_001012726	ENSMUSG00000053873	Aym1	-	activator of yeast meiotic promoters 1	protein-coding	11.234	2.046	0.788	8.019	6.238	2.743	11.329	8.380	5.901	13.552	2.392	2.164	8.611	10.382	9.249	10.415	8.123	7.657	7.429	5.674	5.470	7.172	8.580	7.680	12.640
7774	chr19	41985752	41988033	+	0	NA	intron (NM_145500, intron 1 of 2)	intron (NM_145500, intron 1 of 2)	5129	NM_145500	226122	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	7.656	10.719	3.514	6.290	5.691	3.632	8.068	nan	5.249	7.851	8.469	4.593	5.899	7.629	7.412	7.932	6.676	7.062	3.631	2.939	2.782	6.185	3.549	3.778	11.411
14885	chr9	20877347	20878558	+	0	NA	intron (NM_145154, intron 2 of 5)	intron (NM_145154, intron 2 of 5)	1758	NM_145154	70726	Mm.34019	NM_145154	ENSMUSG00000038742	Angptl6	6330404E11Rik|AGF|ARP3|Arp5	angiopoietin-like 6	protein-coding	7.226	10.130	2.468	7.286	2.315	1.121	3.989	5.620	4.728	7.310	4.268	3.557	5.380	5.744	6.712	8.889	3.726	7.334	3.599	1.901	1.951	4.871	2.443	1.738	10.900
493	chr1	107885991	107890999	+	0	NA	Intergenic	L1Md_A|LINE|L1	-28764	NR_102306	319596	Mm.136054	NR_102306	ENSMUSG00000100457	D830032E09Rik	-	RIKEN cDNA D830032E09 gene	ncRNA	9.715	9.876	2.263	9.361	2.711	1.847	7.824	7.669	5.322	11.170	6.246	3.277	8.487	7.353	9.728	14.694	7.713	9.941	4.885	1.340	1.762	5.210	3.317	3.696	13.906
4795	chr14	67484896	67489029	+	0	NA	Intergenic	Intergenic	-89220	NR_045961	73977	Mm.414915	NR_045961	ENSMUSG00000093472	4930438E09Rik	-	RIKEN cDNA 4930438E09 gene	ncRNA	6.437	6.696	2.325	8.456	1.897	1.543	4.881	3.983	4.629	6.597	2.797	2.332	4.952	6.466	7.078	7.477	4.199	7.900	8.072	3.411	3.309	7.886	4.412	4.481	8.785
1436	chr10	75218997	75220300	+	0	NA	intron (NM_001145826, intron 1 of 18)	MLT1A1|LTR|ERVL-MaLR	7258	NM_001145826	74392	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	3.084	0.990	0.501	2.824	2.468	1.169	5.306	2.067	2.529	3.566	1.337	0.991	2.688	3.793	3.235	2.920	0.806	3.141	nan	0.688	0.270	0.890	0.712	0.432	4.786
3719	chr12	110691133	110693823	+	0	NA	intron (NM_010480, intron 9 of 10)	intron (NM_010480, intron 9 of 10)	3917	NM_010480	15519	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	3.937	0.338	0.144	nan	0.173	0.048	0.946	nan	nan	nan	0.027	0.081	1.160	2.616	2.175	3.946	3.911	0.382	0.273	0.399	0.080	0.424	0.241	0.108	9.343
13124	chr7	35071847	35078710	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	-18712	NM_009884	12611	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	4.019	1.211	0.984	5.072	4.384	3.396	2.846	3.266	3.810	2.533	1.970	2.123	3.355	3.124	2.800	2.799	2.814	5.155	1.763	1.194	1.299	2.008	1.298	1.329	2.531
4699	chr14	56385368	56388646	+	0	NA	intron (NM_138652, intron 20 of 22)	intron (NM_138652, intron 20 of 22)	-15690	NM_001033043	30054	Mm.287783	NM_001033043	ENSMUSG00000000365	Rnf17	MMIP-2|Mmip2|TDRD4	ring finger protein 17	protein-coding	5.600	nan	0.261	4.170	4.105	1.825	3.688	6.497	2.634	5.538	6.389	2.092	3.818	7.283	6.632	5.860	3.047	6.030	0.725	0.759	0.611	1.016	0.309	0.512	10.718
5506	chr15	83303262	83305648	+	0	NA	intron (NM_025445, intron 14 of 15)	B4A|SINE|B4	45792	NM_025445	66251	Mm.258910	NM_025445	ENSMUSG00000054277	Arfgap3	0610009H19Rik|1810004P07Rik|1810035F16Rik|9130416J18Rik|Arfgap1	ADP-ribosylation factor GTPase activating protein 3	protein-coding	5.859	2.287	1.316	3.134	4.165	3.041	7.424	10.482	nan	3.739	4.802	3.719	5.324	5.892	4.952	5.832	3.792	4.977	nan	3.100	3.472	nan	3.380	3.502	nan
13200	chr7	53128179	53130014	+	0	NA	Intergenic	L1Md_F|LINE|L1	762793	NR_105746	102466619		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	13.214	15.785	4.448	10.873	11.537	5.779	11.651	14.830	6.783	13.912	11.349	4.946	9.794	14.760	10.120	12.109	9.155	11.761	6.770	4.662	4.883	7.310	5.472	5.996	18.383
6543	chr17	32075493	32078374	+	0	NA	intron (NR_027316, intron 8 of 8)	intron (NR_027316, intron 8 of 8)	14490	NR_027316	435518	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	ENSMUSG00000002791|Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	4.946	3.478	0.889	3.697	2.325	1.116	4.560	3.285	2.316	2.962	1.753	1.160	5.705	6.724	2.383	nan	1.544	5.696	1.668	1.315	0.473	4.750	0.683	0.463	5.580
13479	chr7	106463257	106465830	+	0	NA	Intergenic	L1Md_T|LINE|L1	-23470	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	3.200	1.082	0.259	3.151	2.360	1.462	0.883	3.046	2.956	5.193	0.641	0.379	2.270	5.361	3.447	4.320	3.424	5.809	nan	0.670	0.625	1.297	1.411	0.614	6.495
9388	chr3	81734706	81737668	+	0	NA	Intergenic	Intergenic	-65838	NR_138586	320566	Mm.208417	NR_138586	ENSMUSG00000103695	A830029E22Rik	-	RIKEN cDNA A830029E22 gene	ncRNA	4.160	10.894	5.844	4.109	2.036	0.764	3.461	2.822	4.058	4.188	2.761	2.741	3.830	3.104	4.759	4.209	3.109	5.341	2.198	1.853	1.378	3.264	2.351	1.131	4.981
10929	chr4	150102999	150105900	+	0	NA	3' UTR (NM_177366, exon 4 of 4)	3' UTR (NM_177366, exon 4 of 4)	-14895	NM_019741	56485	Mm.260220	NM_019741	ENSMUSG00000028976	Slc2a5	AI526984|Glut5|Slc5a	solute carrier family 2 (facilitated glucose transporter), member 5	protein-coding	5.052	nan	1.201	3.033	5.400	3.267	5.325	2.681	3.938	3.382	1.943	3.361	2.091	6.529	3.467	2.195	2.037	3.240	1.526	1.725	1.036	2.414	1.499	1.049	1.994
14461	chr8	93461272	93463644	+	0	NA	Intergenic	Intergenic	73249	NM_001003951	67935	Mm.65457	NM_001003951	ENSMUSG00000058019	Ces5a	1700081L16Rik|1700122C07Rik|BB081581|Ces7|Gm503|cauxin	carboxylesterase 5A	protein-coding	2.620	1.011	1.615	2.088	1.563	2.178	1.706	2.847	1.853	1.599	1.085	1.024	1.508	1.864	1.893	1.500	2.065	1.695	3.060	3.566	5.004	2.242	7.918	9.164	0.967
4493	chr14	19469074	19472275	+	0	NA	Intergenic	L1Md_F|LINE|L1	131913	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	2.740	0.885	0.283	2.384	1.005	0.534	1.582	1.495	nan	2.952	0.377	0.696	2.361	3.400	2.712	4.463	1.801	3.915	0.630	0.490	0.264	nan	0.597	0.249	5.662
2752	chr11	98752099	98754415	+	0	NA	intron (NM_178060, intron 1 of 8)	intron (NM_178060, intron 1 of 8)	11472	NM_001313983	21833	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	3.954	nan	0.162	1.493	0.795	0.657	2.388	3.116	1.357	1.882	3.363	1.082	1.638	3.661	2.801	3.788	1.663	3.126	0.610	nan	0.465	0.671	nan	nan	3.953
15833	chrX	139114510	139118598	+	0	NA	Intergenic	Intergenic	30311	NM_029174	75125	Mm.179221	NM_029174	ENSMUSG00000031270	4930513O06Rik	-	RIKEN cDNA 4930513O06 gene	protein-coding	5.680	4.440	2.211	3.722	4.021	1.832	5.322	5.455	2.517	5.210	3.301	2.221	3.392	6.064	3.972	5.031	4.910	4.124	4.166	3.495	2.631	2.832	4.650	3.165	7.561
14826	chr8	129455620	129458432	+	0	NA	Intergenic	Intergenic	193396	NR_144501	102635552		NM_001346808		Gm32856	-	predicted gene, 32856	protein-coding	3.786	nan	0.545	2.110	1.712	0.814	1.936	4.027	2.403	2.616	1.652	0.766	2.661	3.854	2.676	4.838	2.597	3.196	nan	1.033	0.611	nan	0.629	nan	3.831
5750	chr16	4600572	4607880	+	0	NA	intron (NM_031184, intron 1 of 6)	intron (NM_031184, intron 1 of 6)	9513	NM_031184	83396	Mm.134072	NM_031184	ENSMUSG00000014303	Glis2	Gli5|Klf16|Nkl	GLIS family zinc finger 2	protein-coding	nan	1.137	0.437	2.805	1.281	0.715	4.840	6.942	1.697	1.656	0.902	0.980	4.066	3.528	3.380	7.069	3.309	4.228	1.142	0.673	0.659	1.269	0.828	0.705	5.629
6913	chr17	84531928	84538779	+	0	NA	intron (NM_177606, intron 2 of 29)	intron (NM_177606, intron 2 of 29)	23458	NM_177606	213556	Mm.215159	NM_177606	ENSMUSG00000040852	Plekhh2	AI256725|E030001K05|mKIAA2028	pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	protein-coding	1.864	1.992	1.277	1.714	1.248	0.792	3.529	6.268	nan	1.734	3.013	2.481	2.184	2.978	2.597	2.967	2.337	2.022	3.308	1.792	1.487	2.675	4.701	3.535	2.041
1993	chr11	18065281	18066334	+	0	NA	Intergenic	Intergenic	-30179	NR_131129	327872		NR_131129	ENSMUSG00000085453	Gm12018	OTTMUSG00000005202	predicted gene 12018	ncRNA	nan	nan	0.354	0.860	1.677	1.445	3.445	0.771	1.456	1.610		0.285	1.788	3.783	0.788	0.693	0.874	nan	0.313	0.293	0.698	0.396	0.492	0.381	0.503
11437	chr5	92714050	92716112	+	0	NA	intron (NM_015756, intron 1 of 10)	B2_Mm2|SINE|B2	31646	NM_015756	27428	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	1.244	1.073	0.573	1.505	1.512	0.678	1.244	1.888	1.660	1.146	0.890	0.580	1.601	3.829	1.608	1.540	0.934	2.148	0.493	0.615	0.076	0.449	0.345	0.147	1.050
1499	chr10	80117998	80120795	+	0	NA	intron (NR_126043, intron 1 of 10)	intron (NR_126043, intron 1 of 10)	3593	NM_001301854	20869	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	10.519	5.586	5.462	4.815	7.288	4.275	8.016	7.849	2.802	7.674	4.508	3.276	4.525	8.580	nan	5.072	9.583	3.338	nan	8.157	5.113	3.416	10.072	10.006	8.270
919	chr1	179638276	179645343	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-26422	NM_178653	109232	Mm.136458	NM_178653	ENSMUSG00000038936	Sccpdh	AW214504|C330023F11Rik	saccharopine dehydrogenase (putative)	protein-coding	7.600	0.734	0.334	1.693	1.551	0.978	2.319	6.220	2.436	1.911	3.749	2.890	3.696	nan	3.317	6.321	6.488	5.056	0.560	0.816	0.430	0.400	0.443	0.237	2.350
400	chr1	89223017	89224081	+	0	NA	Intergenic	L1Md_A|LINE|L1	153087	NM_133816	98402	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	8.912	12.283	2.169	10.505	4.285	4.801	7.127	6.824	4.165	14.675	5.763	3.335	7.767	6.966	8.165	14.395	5.216	8.171	4.492	1.699	3.705	6.396	2.697	5.748	15.831
15157	chr9	60695846	60697688	+	0	NA	Intergenic	Intergenic	-8633	NM_001146046	102747	Mm.269413	NM_145616	ENSMUSG00000047766	Lrrc49	AI430817|AW050057|D430025H09Rik|PGs4|p79	leucine rich repeat containing 49	protein-coding	5.302	1.121	0.615	3.339	1.738	1.044	3.332	4.205	3.256	2.939	3.267	3.556	3.378	4.674	3.275	4.019	2.735	3.642	2.160	1.126	0.788	1.748	1.621	0.822	3.961
7984	chr2	17650778	17654273	+	0	NA	intron (NM_028757, intron 2 of 6)	RLTR10-int|LTR|ERVK	78543	NM_028757	74103	Mm.120298	NM_028757	ENSMUSG00000053702	Nebl	1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl	nebulette	protein-coding	6.036	0.718	0.223	6.604	1.920	0.992	3.584	5.108	4.553	6.752	4.990	1.434	6.550	7.362	5.038	5.528	3.970	7.104	6.419	2.747	2.385	4.218	5.321	4.350	9.815
9832	chr3	137608529	137612104	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-13356	NM_030143	73284	Mm.250841	NM_030143	ENSMUSG00000046818	Ddit4l	1700037B15Rik|1700108M02Rik|REDD2|RTP801L|Smhs1	DNA-damage-inducible transcript 4-like	protein-coding	4.582	nan	1.621	2.416	2.501	1.023	4.382	3.327	3.266	3.446	2.159	1.027	5.296	6.535	2.940	4.024	4.280	3.280	1.053	2.114	1.184	0.830	0.960	0.555	2.452
633	chr1	135024607	135032902	+	0	NA	intron (NM_001033409, intron 4 of 17)	intron (NM_001033409, intron 4 of 17)	66189	NM_001278115	67196	Mm.284587	NM_026024	ENSMUSG00000026429	Ube2t	2700084L22Rik|C80607	ubiquitin-conjugating enzyme E2T	protein-coding	9.067	11.755	4.771	nan	4.020	2.974	5.852	7.930	6.405	7.232	4.959	3.794	8.947	nan	8.832	nan	6.505	8.895	6.087	2.598	3.010	6.453	3.670	4.410	nan
5963	chr16	29643799	29645919	+	0	NA	intron (NM_001199177, intron 28 of 29)	intron (NM_001199177, intron 28 of 29)	65525	NM_001199177	74143	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	4.100	0.589	0.681	1.736	2.021	0.815	2.990	4.408	2.834	2.459	1.388	0.997	4.927	4.709	3.688	5.919	2.135	5.352	1.039	0.784	0.346	0.821	nan	0.297	3.774
1372	chr10	66901531	66903326	+	0	NA	Intergenic	B1_Mur4|SINE|Alu	17956	NR_138560	68488	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	6.946	1.463	0.979	2.147	4.656	1.952	2.549	4.448	4.491	4.835	1.227	0.724	3.205	4.041	4.524	3.787	4.751	2.578	1.307	1.421	0.968	3.060	0.155	0.311	4.842
7551	chr19	10048697	10059295	+	0	NA	intron (NM_021890, intron 3 of 11)	intron (NM_021890, intron 3 of 11)	12448	NM_021890	60527	Mm.253875	NM_021890	ENSMUSG00000024664	Fads3	AI464531	fatty acid desaturase 3	protein-coding	8.734	4.627	1.760	6.618	5.302	2.962	6.571	10.807	nan	6.161	5.944	2.462	5.485	8.732	6.108	nan	5.577	7.605	1.442	1.468	1.499	2.763	1.849	1.794	7.740
9771	chr3	122160470	122167193	+	0	NA	exon (NM_007378, exon 43 of 50)	exon (NM_007378, exon 43 of 50)	-81726	NM_008129	14630	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	3.963	9.465	4.941	3.424	3.276	1.591	5.720	5.940	4.850	3.960	4.475	4.661	6.426	6.951	4.501	nan	3.655	7.825	3.423	1.971	1.656	3.879	nan	2.222	nan
5468	chr15	81341739	81349330	+	0	NA	intron (NM_011399, intron 1 of 8)	B1_Mur2|SINE|Alu	15231	NM_011399	20524	Mm.222536	NM_011399	ENSMUSG00000022404	Slc25a17	34kDa|47kDa|PMP34|Pmp47	solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17	protein-coding	6.555	nan	2.317	nan	4.336	4.012	6.907	10.591	3.707	nan	nan	2.907	7.768	nan	5.293	5.186	6.141	4.799	3.230	2.436	3.380	nan	3.594	3.947	4.628
13660	chr7	121776723	121782713	+	0	NA	Intergenic	Intergenic	45239	NM_011326	20278	Mm.35247	NM_011326	ENSMUSG00000000216	Scnn1g	SCNEG	sodium channel, nonvoltage-gated 1 gamma	protein-coding	0.326	0.856	0.435	0.447	0.142	0.102	0.354	0.517	0.539	0.405	0.180	0.102	0.203	nan	0.342	0.525	0.306	0.523	7.081	2.705	1.561	6.095	5.458	3.295	0.529
3309	chr12	41469633	41471537	+	0	NA	intron (NM_001271708, intron 1 of 2)	intron (NM_001271708, intron 1 of 2)	15472	NM_001271708	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	4.907	nan	0.827	1.098	1.028	1.271	2.648	2.129	2.309	1.433	0.482	0.323	3.430	3.349	3.031	4.106	4.175	2.926	nan	1.164	0.741	0.711	1.156	0.950	4.836
12820	chr6	140494996	140497854	+	0	NA	intron (NM_144920, intron 3 of 30)	intron (NM_144920, intron 3 of 30)	72326	NM_144920	109135	Mm.247670	NM_144920	ENSMUSG00000030231	Plekha5	2810431N21Rik|AI428202|AK129423|AMH-Cre|Ayu21-9|Gt(pU21)9Imeg|Pepp2|Tg(AMH-cre)1Flor	pleckstrin homology domain containing, family A member 5	protein-coding	2.733	1.552	0.698	1.846	2.114	0.989	5.268	9.272	3.056	2.634	2.995	3.137	4.299	5.560	4.948	4.455	2.606	2.661	nan	0.542	0.747	1.233	0.588	0.696	3.156
12005	chr5	151890416	151892120	+	0	NA	Intergenic	Intergenic	-240060	NM_027009	69263	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	2.090	0.981	0.593	3.917	1.175	0.396	1.166	0.915	2.257	1.679	0.947	0.679	0.769	1.262	1.809	2.060	1.073	3.094	1.136	0.524	0.297	0.954	0.397	0.212	2.434
15649	chr9	123952753	123953750	+	0	NA	Intergenic	Intergenic	15441	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	4.194	3.151	1.051	2.310	0.903	0.671	1.211	1.941	3.311	2.751	2.285	1.501	1.245	nan	2.715	2.746	2.806	1.819	0.325	0.887	0.369	0.155	0.176	0.099	1.390
3594	chr12	88110589	88112973	+	0	NA	Intergenic	RLTR13D6|LTR|ERVK	70113	NM_001105254	100039315	Mm.426539	NM_001105254	ENSMUSG00000066027	Gm10436	ENSMUSG00000072907	predicted gene 10436	protein-coding	3.563	1.449	0.752	5.003	1.117	0.823	1.423	1.462	2.581	2.564	3.280	1.135	1.775	2.122	2.460	3.305	1.657	3.036	1.123	0.801	0.899	1.141	0.795	0.569	6.422
1549	chr10	84166729	84171122	+	0	NA	Intergenic	Intergenic	271546	NM_001004363	77976	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	3.788	0.709	0.623	2.388	2.617	1.103	4.467	1.853	3.617	4.971	3.467	1.463	6.041	4.866	3.721	4.197	4.025	3.940	1.218	0.655	0.423	nan	nan	0.844	4.519
6336	chr17	12941276	12954018	+	0	NA	intron (NM_009338, intron 5 of 8)	intron (NM_009338, intron 5 of 8)	-7251	NM_153151	224530	Mm.490312	NM_153151	ENSMUSG00000062480	Acat3	ACTL	acetyl-Coenzyme A acetyltransferase 3	protein-coding	4.340	2.986	1.390	4.216	3.704	2.005	4.743	4.237	3.407	3.531	4.697	1.922	2.974	5.324	4.869	nan	3.209	5.157	nan	2.257	1.652	3.583	2.579	1.784	5.783
9394	chr3	83993227	83995683	+	0	NA	intron (NM_172681, intron 3 of 34)	RSINE1|SINE|B4	45706	NM_172681	229473	Mm.28838	NM_172681	ENSMUSG00000033767	D930015E06Rik	Kiaa0922|mKIAA0922	RIKEN cDNA D930015E06 gene	protein-coding	2.612	0.897	0.369	2.450	0.861	0.608	2.877	3.160	1.479	2.024	5.084	1.788	3.651	3.084	5.505	5.485	4.774	5.189	nan	0.758	0.560	0.988	0.676	0.566	8.102
1208	chr10	36854790	36860889	+	0	NA	Intergenic	Lx6|LINE|L1	-116705	NM_008229	15182	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	10.935	6.679	2.686	10.186	3.025	2.142	6.363	5.920	3.944	6.197	9.980	4.871	4.872	5.793	7.849	5.639	5.434	7.477	7.591	5.534	4.532	8.712	7.401	8.092	12.477
13705	chr7	127266486	127268836	+	0	NA	Intergenic	ID4_|SINE|ID	6398	NM_009266	20768	Mm.20294	NM_009266	ENSMUSG00000049091	Sephs2	Sps2|Ysg3	selenophosphate synthetase 2	protein-coding	7.143	1.311	0.746	4.142	2.463	1.185	3.271	3.538	3.920	4.807	1.768	1.123	6.150	5.672	4.720	6.128	6.087	4.745	1.041	1.240	0.551	0.788	0.823	0.504	7.518
1803	chr10	120846527	120847874	+	0	NA	intron (NM_177092, intron 4 of 6)	GA-rich|Low_complexity|Low_complexity	-10429	NR_038023	100504616	Mm.451174	NR_038023	ENSMUSG00000087480	Gm15910	OTTMUSG00000027725	predicted gene 15910	ncRNA	2.853	1.399	1.081	2.389	1.427	0.514	2.574	2.445	2.499	2.436	1.096	1.732	3.148	3.279	3.429	3.478	4.070	3.874	1.350	0.932	0.656	0.930	0.638	0.808	3.077
9128	chr2	181409980	181412896	+	0	NA	3' UTR (NM_028125, exon 3 of 3)	3' UTR (NM_028125, exon 3 of 3)	12950	NM_027656	72147	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	5.370	2.331	1.344	5.625	3.792	2.347	2.798	2.392	3.068	3.659	1.802	1.763	1.911	2.884	2.675	4.174	3.392	4.195	2.050	3.150	2.836	2.967	2.916	2.304	4.477
5533	chr15	85584154	85585734	+	0	NA	intron (NR_040433, intron 2 of 4)	MTD|LTR|ERVL-MaLR	-3123	NM_009528	22422	Mm.306946	NM_009528	ENSMUSG00000022382	Wnt7b	Wnt-7b	wingless-type MMTV integration site family, member 7B	protein-coding	nan	0.646	0.748	nan	1.021	0.519	3.827	9.561	nan	1.221	0.105	0.311	2.711	4.698	nan	nan	2.753	nan	nan	0.367	0.450	nan	0.417	0.570	nan
14616	chr8	114112967	114126047	+	0	NA	Intergenic	Intergenic	-14067	NM_024446	67528	Mm.27889	NM_024437	ENSMUSG00000031767	Nudt7	1300007B24Rik|2210404C19Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 7	protein-coding	4.747	2.940	1.217	3.766	2.424	1.740	2.048	3.319	2.676	2.726	1.556	1.481	2.549	3.074	3.256	nan	2.933	3.919	4.075	4.391	3.689	7.057	3.236	2.589	3.595
1201	chr10	27904629	27905713	+	0	NA	Intergenic	L1Md_T|LINE|L1	-169649	NM_008983	19272	Mm.332303	NM_008983	ENSMUSG00000019889	Ptprk	AI853699|PTPk|RPTPkappa	protein tyrosine phosphatase, receptor type, K	protein-coding	2.114	0.301	0.432	2.159	3.801	2.294	3.216	1.126	2.249	2.041	0.648	1.446	1.840	3.445	2.392	3.144	2.360	2.321	0.642	0.780	0.684	0.691	0.648	0.614	1.310
14213	chr8	47863302	47867541	+	0	NA	intron (NM_133791, intron 11 of 22)	intron (NM_133791, intron 11 of 22)	40939	NM_029383	75677	Mm.390033	NM_029383	ENSMUSG00000038064	Cldn22	2210404A22Rik|5330431C14Rik|9530051B05Rik	claudin 22	protein-coding	6.321	2.438	0.877	4.096	4.512	1.644	4.502	5.351	4.224	4.460	2.431	1.466	6.796	7.387	7.375	9.039	4.710	6.505	1.489	0.824	0.416	1.274	0.941	0.700	8.019
11353	chr5	74492844	74494115	+	0	NA	intron (NM_001286437, intron 2 of 7)	intron (NM_001286437, intron 2 of 7)	38263	NM_178672	212986	Mm.134147	NM_178672	ENSMUSG00000062110	Scfd2	E430013M20Rik|STXBP1L1	Sec1 family domain containing 2	protein-coding	2.388	0.954	0.635	2.159	1.253	0.559	3.878	1.684	2.398	3.367	2.514	1.327	2.671	3.293	2.803	6.141	2.442	3.567	0.684	0.370	0.487	0.693	0.402	0.080	3.661
5492	chr15	82973133	82974828	+	0	NA	Intergenic	ID_B1|SINE|B4	-14684	NR_037241	100526477		NR_037241	ENSMUSG00000092751	Mir3080	mmu-mir-3080	microRNA 3080	ncRNA	3.615	1.892	1.461	2.231	3.234	3.158	4.396	8.662	2.506	2.176	nan	1.441	2.618	4.249	3.341	2.375	nan	3.431	1.540	1.212	1.229	nan	1.354	1.593	2.880
15083	chr9	53149086	53151576	+	0	NA	intron (NM_029936, intron 15 of 17)	intron (NM_029936, intron 15 of 17)	97781	NM_029936	77591	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	5.429	0.858	0.573	5.632	2.741	2.040	4.471	5.100	6.593	5.797	7.178	6.319	5.750	6.228	5.485	6.021	4.004	7.696	2.782	2.985	2.027	3.527	3.058	2.523	8.347
3300	chr12	40743037	40744997	+	0	NA	intron (NM_172803, intron 23 of 52)	intron (NM_172803, intron 23 of 52)	-280073	NM_053122	93757	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	6.729	6.362	3.319	6.130	2.146	1.687	2.779	4.819	4.331	4.076	3.631	2.582	4.820	5.951	5.094	5.135	3.615	5.671	nan	2.011	1.240	2.778	5.791	4.023	3.867
5069	chr15	25332073	25337281	+	0	NA	Intergenic	Intergenic	79087	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	3.092	8.265	3.715	1.006	0.745	0.234	1.574	2.345	1.453	1.493	0.888	1.442	2.292	1.232	1.600	1.175	1.655	1.383	1.381	0.879	0.328	1.099	1.034	0.569	1.489
11738	chr5	125669028	125670469	+	0	NA	intron (NM_001190352, intron 3 of 8)	ID_B1|SINE|B4	137330	NM_001190352	208151	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding	2.482	0.788	0.526	2.346	2.763	2.769	4.147	3.685	1.993	2.885	1.927	2.517	2.147	3.969	2.809	2.757	nan	2.354	5.058	1.629	2.043	3.804	nan	4.160	2.394
17	chr1	10137517	10139526	+	0	NA	3' UTR (NM_001102430, exon 38 of 38)	3' UTR (NM_001102430, exon 38 of 38)	94149	NM_001102430	211673	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	7.516	0.756	0.194	2.350	2.230	0.958	2.557	3.553	2.237	2.892	0.710	0.760	4.239	4.324	2.996	4.053	5.029	3.699	0.655	0.764	0.183	0.482	0.603	0.341	3.057
15299	chr9	73966523	73972152	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-35770	NM_001081153	208898	Mm.41035	NM_001081153	ENSMUSG00000062151	Unc13c	1500037O19Rik|AU019458|D9Ertd414e|Munc13-3|Unc13h3	unc-13 homolog C (C. elegans)	protein-coding	0.446	0.477	0.252	0.434	0.185	0.132	0.339	0.463	1.557	0.677	7.582	4.358	0.545	0.551	0.374	0.451	0.377	0.407	0.497	nan	0.241	0.366	0.186	0.138	nan
7762	chr19	40760422	40763392	+	0	NA	Intergenic	Intergenic	-69372	NM_172839	240665	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	4.920	4.787	2.496	4.142	3.905	3.446	2.054	2.691	3.483	4.743	1.495	1.089	2.407	3.424	3.140	5.351	3.453	3.970	0.654	0.959	1.352	0.419	0.397	0.328	6.738
5870	chr16	20356579	20359578	+	0	NA	intron (NM_013790, intron 24 of 29)	intron (NM_013790, intron 24 of 29)	-32674	NM_183158	224044	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	7.935	1.285	1.085	2.856	3.163	2.623	4.253	4.541	3.601	4.062	1.902	1.529	4.126	5.122	4.071	4.431	3.062	4.825	0.878	0.931	1.385	0.609	0.683	0.530	5.672
13397	chr7	89569391	89572203	+	0	NA	Intergenic	IAPEz-int|LTR|ERVK	-53211	NM_029614	76453	Mm.250438	NM_029614	ENSMUSG00000039405	Prss23	2310046G15Rik|4930479H08Rik|AI790574|Spuve	protease, serine 23	protein-coding	2.113	1.185	0.487	1.595	0.649	0.359	0.322	0.631	nan	1.020	1.077	0.793	1.470	0.689	0.933	3.369	nan	nan	0.656	0.651	0.392	nan	0.473	0.383	nan
9349	chr3	60378509	60381141	+	0	NA	Intergenic	Lx3A|LINE|L1	-93005	NM_001253713	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	4.180	3.673	2.103	3.861	2.785	2.201	3.512	3.622	3.086	2.506	1.364	1.905	5.063	4.573	3.789	3.879	3.939	5.295	2.373	1.789	1.455	1.847	1.530	1.301	2.270
14079	chr8	24768675	24770552	+	0	NA	intron (NM_001272059, intron 16 of 18)	IAPEz-int|LTR|ERVK	-43761	NM_001324489	11497	Mm.5168	NM_009619	ENSMUSG00000031553	Adam3	Cyrn1|Taz83|tMDC	a disintegrin and metallopeptidase domain 3 (cyritestin)	protein-coding	3.611	nan	0.703	0.478	0.433	0.138	2.724	0.737	1.700	1.415	0.318	0.160	7.586	3.731	2.549	2.718	5.625	2.017	0.488	0.851	0.367	nan	0.575	0.314	5.176
2356	chr11	68792025	68796623	+	0	NA	intron (NM_175260, intron 26 of 40)	intron (NM_175260, intron 26 of 40)	58807	NM_023668	83431	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	4.087	0.722	0.486	2.471	2.057	1.319	6.174	6.355	2.426	2.554	5.743	3.994	3.575	4.774	5.051	5.584	4.689	4.175	6.180	6.108	5.856	5.584	nan	5.841	4.016
4721	chr14	58504141	58509528	+	0	NA	Intergenic	Intergenic	434148	NM_013518	14180	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	5.359	5.619	3.389	5.787	4.475	3.538	3.287	nan	4.280	5.349	3.573	3.240	3.007	4.732	4.254	4.912	3.779	5.580	1.689	1.727	2.789	1.865	1.544	1.918	5.949
15500	chr9	108240151	108251574	+	0	NA	intron (NM_001276492, intron 2 of 4)	intron (NM_001276492, intron 2 of 4)	17953	NM_010017	13138	Mm.7524	NM_010017	ENSMUSG00000039952	Dag1	D9Wsu13e|DG|Dp427|Dp71	dystroglycan 1	protein-coding	8.793	8.262	3.192	7.817	5.134	3.466	5.701	7.506	nan	nan	5.548	3.928	6.955	9.409	6.940	nan	5.525	nan	2.954	2.740	2.640	2.771	2.362	2.568	nan
7625	chr19	21178611	21181613	+	0	NA	Intergenic	ORR1D2|LTR|ERVL-MaLR	75402	NR_126458	75354	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	7.359	1.095	0.898	3.477	5.468	2.410	8.162	11.540	4.796	5.215	5.945	3.898	5.810	8.860	5.809	7.596	7.839	6.425	1.551	1.750	1.142	3.520	2.849	2.374	7.140
6548	chr17	32795500	32800920	+	0	NA	exon (NM_183177, exon 4 of 4)	exon (NM_183177, exon 4 of 4)	-9923	NM_172458	208292	Mm.38813	NM_172458	ENSMUSG00000024298	Zfp871	4732483N19|9030612M13Rik|AI118577|AI265322|mKIAA3006	zinc finger protein 871	protein-coding	3.395	0.493	0.419	0.395	0.194	0.135	5.534	5.015	2.042	1.322	1.684	0.597	3.059	1.463	3.871	5.874	4.584	1.730	0.549	0.602	0.296	0.347	0.638	0.226	2.280
3700	chr12	106922279	106924204	+	0	NA	Intergenic	Intergenic	-206917	NR_015512	71033	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA	10.778	12.881	3.817	9.754	3.828	2.810	7.973	8.115	4.702	10.820	6.795	3.466	8.098	9.866	9.981	13.442	8.232	9.207	6.445	2.044	3.192	6.392	3.108	4.357	22.852
10880	chr4	148023532	148027185	+	0	NA	intron (NM_011929, intron 5 of 22)	intron (NM_011929, intron 5 of 22)	13455	NM_011929	26372	Mm.89987	NM_011929	ENSMUSG00000029016	Clcn6	AI850629|Clc6	chloride channel, voltage-sensitive 6	protein-coding	0.691	nan	0.489	0.817	0.574	0.600	0.616	0.598	0.829	0.561	0.302	0.363	0.230	0.525	0.647	0.692	0.723	0.489	6.424	4.237	5.271	4.466	16.013	17.406	0.623
13768	chr7	134488410	134490675	+	0	NA	Intergenic	Intergenic	-112714	NM_001081331	71007	Mm.334285	NM_001081331	ENSMUSG00000030994	D7Ertd443e	4933400E14Rik|FATS|Gm497	DNA segment, Chr 7, ERATO Doi 443, expressed	protein-coding	11.698	5.812	1.423	13.137	6.935	4.624	10.848	15.201	7.248	17.207	7.723	4.949	13.471	15.712	12.603	12.860	9.653	11.724	5.262	2.934	3.969	5.612	3.911	4.931	19.171
10198	chr4	80560151	80562045	+	0	NA	Intergenic	Intergenic	-273115	NM_031202	22178	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	2.692	0.560	0.417	2.794	4.064	4.046	1.982	2.620	3.016	2.732	2.083	1.934	2.482	3.275	2.469	3.075	2.482	3.714	nan	1.097	1.553	1.134	2.298	2.293	1.729
10970	chr4	153667845	153669048	+	0	NA	Intergenic	Intergenic	-185616	NM_001099299	230959	Mm.318874	NM_001099299	ENSMUSG00000039546	Ajap1	Gm573	adherens junction associated protein 1	protein-coding	2.355	0.716	0.099	3.611	0.605	0.104	4.604	4.840	1.452	1.890	1.251	3.005	4.234	3.633	4.996	6.328	1.723	4.276	0.828	0.318	0.296	1.293	0.401	0.390	3.019
14510	chr8	98409436	98412594	+	0	NA	Intergenic	Intergenic	-600872	NR_110579	100873092	Mm.414599	NR_110579	ENSMUSG00000089819	Gm15679	OTTMUSG00000025218	predicted gene 15679	ncRNA	4.619	10.682	3.955	2.644	1.469	0.683	3.498	5.361	1.342	1.819	2.516	1.375	3.591	3.457	5.893	5.606	3.571	3.386	2.408	1.424	1.405	3.487	1.224	1.071	5.681
5823	chr16	15983317	15987549	+	0	NA	intron (NM_146068, intron 8 of 19)	intron (NM_146068, intron 8 of 19)	98147	NM_007679	12609	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	7.889	2.712	1.348	6.701	6.112	3.652	4.081	6.234	6.042	5.259	5.074	3.438	4.965	4.967	4.419	4.683	3.207	6.202	1.962	1.290	1.680	3.017	1.830	1.868	2.799
5871	chr16	20391005	20392952	+	0	NA	intron (NM_013790, intron 11 of 29)	B3A|SINE|B2	34416	NM_013790	27416	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	3.943	0.608	0.536	2.593	2.474	1.121	1.777	1.755	2.777	4.856	0.792	1.063	2.997	5.472	3.039	4.267	3.591	4.803	0.640	0.455	0.301	0.700	0.465	0.122	4.499
6298	chr17	5202119	5203425	+	0	NA	intron (NM_001085355, intron 4 of 19)	intron (NM_001085355, intron 4 of 19)	207698	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	3.362	1.998	1.056	2.520	2.483	1.122	3.545	2.273	2.573	2.617	1.222	0.947	2.228	4.099	2.437	4.373	3.329	3.138	nan	0.950	0.465	0.957	0.878	0.421	2.806
13440	chr7	97454753	97455924	+	0	NA	intron (NM_001010826, intron 2 of 2)	B1_Mur3|SINE|Alu	2134	NM_001012434	233529	Mm.334033	NM_001010826	ENSMUSG00000051727	Kctd14	AI449310|D7Ertd760e	potassium channel tetramerisation domain containing 14	protein-coding	2.024	0.976	0.450	1.942	3.053	1.562	1.201	1.588	2.717	2.243	0.391	1.367	2.435	3.198	1.945	3.760	4.125	2.014	nan	0.275	0.217	0.502	0.307		1.589
5380	chr15	77184479	77190407	+	0	NA	intron (NM_053104, intron 2 of 13)	intron (NM_053104, intron 2 of 13)	-33631	NM_001286418	93686	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	nan	nan	0.467	nan	0.458	0.332	nan	2.069	1.022	nan	nan	0.603	0.970	nan	1.505	1.430	nan	1.308	4.713	2.606	1.650	nan	3.673	2.808	1.190
5807	chr16	13239003	13241310	+	0	NA	Intergenic	ID4_|SINE|ID	-16325	NM_001122667	239719	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	ENSMUSG00000075401|Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	6.025	0.942	0.642	4.013	3.264	1.611	3.257	8.566	4.732	5.675	1.625	2.820	5.325	8.892	4.317	6.006	4.343	5.728	2.217	1.736	0.664	1.422	1.948	0.934	4.608
8861	chr2	155694931	155697114	+	0	NA	Intergenic	Intergenic	-3638	NM_001163452	56407	Mm.234944	NM_019828	ENSMUSG00000038324	Trpc4ap	4833429F06Rik|D2Ertd113e|Trrp4ap|mFLJ00177|truss	transient receptor potential cation channel, subfamily C, member 4 associated protein	protein-coding	nan	1.200	0.631	0.523	0.482	0.168	0.868	1.929	nan	nan	0.612	0.594	nan	nan	0.898	1.489	1.328	nan	nan	4.384	4.092	8.184	6.385	6.556	nan
1220	chr10	39813614	39815756	+	0	NA	intron (NM_011264, intron 10 of 31)	B4A|SINE|B4	82525	NM_011264	19714	Mm.439723	NM_011264	ENSMUSG00000019841	Rev3l	Rev|Rev3|Sez4	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding	3.577	1.074	0.591	3.342	2.183	1.571	0.973	2.199	1.702	1.907	0.530	0.797	1.220	1.745	1.537	2.210	1.305	2.397	1.208	1.202	0.686	1.327	0.700	0.764	1.933
7493	chr19	5647807	5649991	+	0	NA	TTS (NM_009045)	TTS (NM_009045)	11409	NM_009045	19697	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	5.416	7.385	2.142	6.098	1.543	0.805	5.500	6.133	3.902	3.801	2.769	1.608	4.094	5.349	6.446	7.301	4.728	5.571	1.362	1.101	0.927	3.733	1.558	1.026	8.630
14134	chr8	35036705	35044204	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-74764	NM_175091	21951	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	8.856	2.439	1.055	6.460	5.866	4.322	7.897	10.835	5.183	8.564	4.640	3.659	8.847	9.395	8.383	9.377	7.837	7.754	1.963	1.142	1.170	0.978	2.506	2.660	nan
9397	chr3	84192198	84193882	+	0	NA	intron (NM_001271725, intron 4 of 11)	intron (NM_001271725, intron 4 of 11)	18402	NR_036654	624713	Mm.442604	NR_036654		Gm6525	EG624713	ribosomal protein L36a pseudogene	pseudo	2.802	2.471	1.410	1.992	2.146	1.432	2.523	3.063	3.720	2.330	4.736	3.292	3.042	4.114	1.986	3.973	3.750	3.345	nan	0.509	0.801	0.834	1.351	1.121	1.361
3663	chr12	103577943	103582492	+	0	NA	intron (NM_028980, intron 6 of 24)	Lx8|LINE|L1	47652	NM_028980	74521	Mm.248619	NM_028980	ENSMUSG00000021209	Ppp4r4	8430415E04Rik|mKIAA1622	protein phosphatase 4, regulatory subunit 4	protein-coding	3.856	1.030	0.741	5.505	2.808	1.390	1.362	1.839	nan	2.991	1.763	0.903	1.390	2.669	2.055	2.210	2.068	3.542	1.330	1.397	1.056	2.176	0.902	0.574	4.188
5266	chr15	66387137	66388391	+	0	NA	intron (NM_019457, intron 11 of 11)	L1_Mus2|LINE|L1	-101540	NM_152923	110862	Mm.255585	NM_152923	ENSMUSG00000056258	Kcnq3	-	potassium voltage-gated channel, subfamily Q, member 3	protein-coding	3.559	0.789	0.516	2.397	1.850	0.852	2.430	1.918	1.455	2.262	3.212	2.741	4.061	3.633	3.096	1.932	3.624	2.598	0.758	0.913	0.488	0.407	0.237	1.022	1.482
12254	chr6	54355337	54357511	+	0	NA	intron (NR_033635, intron 3 of 13)	RLTR10|LTR|ERVK	29412	NM_030024	78004	Mm.41984	NM_030024	ENSMUSG00000045725	Prr15	E130201N16Rik|G90	proline rich 15	protein-coding	1.820	0.417	0.737	0.549	0.958	0.614	3.047	1.577	1.607	1.507	0.419	0.198	1.546	1.561	0.696	nan	2.843	1.613	2.876	2.959	1.660	1.642	3.778	2.493	1.109
10063	chr4	47271414	47274052	+	0	NA	intron (NM_009928, intron 14 of 39)	intron (NM_009928, intron 14 of 39)	64721	NM_009928	12819	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	4.982	2.703	0.779	2.701	2.003	0.560	1.547	4.184	2.350	2.970	2.156	1.118	1.841	3.671	3.264	3.141	1.429	3.312	1.787	1.692	0.699	nan	1.664	0.553	4.409
5276	chr15	66945079	66988267	+	0	NA	intron (NM_008681, intron 1 of 15)	intron (NM_008681, intron 1 of 15)	2968	NM_008681	17988	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	9.236	2.964	1.179	7.110	6.072	3.038	8.740	12.238	7.122	8.712	2.798	1.954	10.135	10.143	9.380	8.651	5.870	9.258	2.149	1.539	0.973	3.956	1.246	0.840	9.709
7031	chr18	12380572	12385011	+	0	NA	intron (NM_010680, intron 2 of 74)	B1F|SINE|Alu	48767	NM_010680	16774	Mm.42012	NM_010680	ENSMUSG00000024421	Lama3	Lama3B|[a]3B	laminin, alpha 3	protein-coding	7.627	2.466	1.107	4.209	4.682	2.400	2.801	6.794	3.919	6.148	2.691	1.128	5.357	6.778	5.045	7.306	5.645	5.000	0.881	1.017	0.682	0.863	0.549	0.407	8.920
2652	chr11	94176203	94177598	+	0	NA	Intergenic	Intergenic	-34554	NM_009427	22057	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	2.101	nan	1.075	2.396	2.354	0.800	1.566	2.137	2.960	3.160	1.570	1.425	2.033	3.260	1.309	2.644	2.005	3.114	1.853	nan	0.790	1.447	nan	nan	1.375
2337	chr11	67337132	67349867	+	0	NA	intron (NM_001081250, intron 14 of 38)	ID_B1|SINE|B4	16396	NM_001081250	544791	Mm.461064	NM_001081250	ENSMUSG00000060180	Myh13	MyHC-eo	myosin, heavy polypeptide 13, skeletal muscle	protein-coding	4.154	2.133	0.953	2.587	4.880	2.615	5.610	5.233	1.954	2.833	1.882	1.408	3.825	6.956	4.060	3.114	2.626	3.899	1.676	2.605	1.641	2.613	nan	1.493	3.696
4263	chr13	81087248	81092637	+	0	NA	Intergenic	B3|SINE|B2	125868	NR_015587	319983	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	6.541	1.106	0.622	6.022	5.630	3.896	4.268	7.870	7.141	7.558	7.006	5.069	6.207	9.221	5.726	nan	4.542	5.902	0.987	0.956	0.631	0.973	0.869	0.598	4.109
5014	chr15	6504301	6505965	+	0	NA	Intergenic	Intergenic	59800	NM_013485	12279	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	2.867	3.211	1.194	0.956	0.694	0.413	1.092	1.738	1.534	1.547	5.377	1.135	1.491	2.632	1.339	1.196	1.496	1.083	0.605	0.779	1.054	0.555	0.312	0.092	1.515
2243	chr11	58012617	58014345	+	0	NA	intron (NM_028451, intron 1 of 18)	B1_Mm|SINE|Alu	4417	NM_028451	73158	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	5.611	12.567	4.858	7.498	3.567	1.457	2.590	2.948	4.193	3.382	1.929	1.379	3.194	4.476	3.436	5.277	2.610	5.136	nan	1.987	1.077	2.874	2.136	0.882	nan
8046	chr2	26892290	26893820	+	0	NA	exon (NM_009298, exon 4 of 5)	exon (NM_009298, exon 4 of 5)	9832	NM_009298	20935	Mm.245577	NM_009298	ENSMUSG00000036160	Surf6	D2Wsu129e|Surf-6	surfeit gene 6	protein-coding	3.722	0.948	0.229	0.856	0.305	0.168	5.267	6.081	nan	0.559	0.338	0.328	3.637	4.138	3.982	7.885	3.755	1.946	0.197	0.226	0.243	0.668	0.189	0.359	5.770
1288	chr10	53134258	53136169	+	0	NA	Intergenic	Intergenic	-145057	NR_038015	100502820	Mm.55827	NR_038015		Gm19395	-	predicted gene, 19395	ncRNA	4.384	0.715	1.108	4.344	1.927	1.447	2.664	1.748	2.822	2.096	0.479	2.547	1.342	1.615	1.826	2.475	2.466	2.873	nan	1.302	1.405	1.531	0.483	0.649	nan
1087	chr10	8603460	8607687	+	0	NA	Intergenic	IAPEz-int|LTR|ERVK	-86748	NM_177387	338362	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	10.597	2.424	1.134	9.164	7.675	5.701	5.901	6.133	6.403	10.454	4.748	3.067	6.175	9.425	7.299	7.947	6.546	8.847	3.535	2.489	2.584	3.303	3.577	4.198	9.510
810	chr1	164053315	164054829	+	0	NA	intron (NM_011345, intron 10 of 13)	intron (NM_011345, intron 10 of 13)	5838	NM_011345	20339	Mm.5245	NM_011345	ENSMUSG00000026582	Sele	CD62E|E-selectin|ELAM-1|Elam|LECAM2	selectin, endothelial cell	protein-coding	3.385	0.683	0.357	nan	1.783	1.124	1.693	1.481	nan	1.569	2.403	0.831	nan	3.701	2.237	2.437	2.849	1.763	0.703	0.547	0.243	nan	nan	0.326	1.795
11414	chr5	91117798	91119726	+	0	NA	Intergenic	Intergenic	-20837	NM_009704	11839	Mm.8039	NM_009704	ENSMUSG00000029378	Areg	AR|Mcub|Sdgf	amphiregulin	protein-coding	4.363	1.409	0.764	2.518	3.767	2.392	4.971	5.168	3.798	4.412	10.700	5.639	5.642	8.285	6.405	4.815	2.833	3.654	1.446	1.789	0.720	2.161	0.866	0.981	3.665
5425	chr15	79202077	79212395	+	0	NA	intron (NR_029470, intron 2 of 4)	B1_Mus1|SINE|Alu	-21937	NM_008837	18693	Mm.259464	NM_008837	ENSMUSG00000068206	Pick1	Prkcabp	protein interacting with C kinase 1	protein-coding	nan	nan	0.669	nan	1.507	0.887	nan	2.753	1.267	nan	nan	0.760	0.965	nan	1.441	1.703	nan	2.168	4.912	3.093	2.832	nan	4.653	3.695	2.070
13610	chr7	119198416	119200833	+	0	NA	Intergenic	Intergenic	-15250	NM_001024138	209776	Mm.300632	NM_001024138	ENSMUSG00000066197	Gpr139	GPRg1|Gm495|PGR3	G protein-coupled receptor 139	protein-coding	4.677	1.227	0.553	3.293	3.101	1.273	3.032	6.509	3.550	3.886	1.320	1.039	5.830	5.916	5.392	5.534	4.135	4.904	0.829	0.441	0.577	0.921	0.395	0.102	3.675
9092	chr2	178398116	178399780	+	0	NA	intron (NM_177191, intron 6 of 43)	intron (NM_177191, intron 6 of 43)	8710	NM_177191	320558	Mm.70781	NM_177191	ENSMUSG00000060445	Sycp2	3830402K23Rik|4930518F03Rik	synaptonemal complex protein 2	protein-coding	2.039	0.453	0.076	2.191	1.745	0.808	2.086	0.721	3.293	3.549	0.468	0.604	2.050	3.220	2.754	5.432	3.485	3.388	0.675	0.668	0.333	0.579	0.674	0.153	4.949
1587	chr10	90642034	90648449	+	0	NA	intron (NM_001177396, intron 2 of 11)	intron (NM_001177396, intron 2 of 11)	68550	NM_181398	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	7.082	11.000	5.510	5.972	4.668	3.299	4.498	6.675	5.042	5.282	6.333	3.515	6.453	7.070	6.697	6.800	5.405	nan	6.987	5.192	4.304	nan	nan	5.517	6.405
5838	chr16	17553759	17555469	+	0	NA	intron (NM_029053, intron 4 of 8)	RMER17A2|LTR|ERVK	6633	NM_029053	74685	Mm.38634	NM_029053	ENSMUSG00000022759	Lrrc74b	4930451C15Rik|mCG12354|mCP17390	leucine rich repeat containing 74B	protein-coding	5.382	5.419	1.835	4.749	3.136	2.706	4.749	5.686	2.559	4.037	0.915	1.778	5.560	6.180	6.879	9.925	5.910	5.959	2.134	1.659	1.425	1.525	2.607	1.632	9.573
227	chr1	60619362	60624793	+	0	NA	Intergenic	Intergenic	-55312	NM_001045513	77300	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	7.813	3.187	0.960	6.773	3.818	2.595	4.421	6.024	4.574	7.509	2.849	2.377	6.663	5.988	6.285	8.616	5.940	7.425	3.773	2.235	1.941	4.324	1.900	2.241	7.195
4256	chr13	75944058	75947841	+	0	NA	Intergenic	L1MB2|LINE|L1	-2125	NM_028493	73296	Mm.276200	NM_028493	ENSMUSG00000021589	Rhobtb3	1700040C17Rik|2610033K01Rik|4930503C18Rik|AI317148|AW208826|mKIAA0878	Rho-related BTB domain containing 3	protein-coding	3.155	0.994	0.851	2.817	4.248	3.779	3.093	1.185	3.152	3.864	0.923	0.491	3.192	7.842	2.691	1.969	1.267	3.666	0.759	0.697	0.421	0.372	0.578	0.157	1.613
6462	chr17	27962218	27964240	+	0	NA	intron (NM_001286040, intron 1 of 24)	B1_Mus1|SINE|Alu	53923	NM_181413	224650	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	7.894	12.825	8.458	4.268	4.770	3.842	7.730	5.554	2.752	3.369	2.635	1.964	4.335	4.411	3.410	nan	4.744	2.225	3.053	3.890	4.029	2.002	3.485	2.711	4.280
7658	chr19	24487545	24504954	+	0	NA	intron (NM_008846, intron 1 of 14)	intron (NM_008846, intron 1 of 14)	-18775	NM_026520	68034	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|ENSMUSG00000051082|Gm9849	family with sequence similarity 122, member A	protein-coding	nan	1.153	0.583	nan	1.688	0.983	2.197	nan	1.535	1.829	nan	0.670	1.756	2.359	2.174	2.013	2.109	2.613	nan	2.895	2.040	5.605	nan	3.652	1.519
10217	chr4	82177367	82180671	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	113639	NR_040659	545641	Mm.216028	NR_040659	ENSMUSG00000085022	Gm5860	EG545641	predicted gene 5860	ncRNA	1.494	1.166	0.627	1.845	0.961	0.620	0.473	0.729	1.155	1.246	0.469	0.585	0.289	0.873	0.701	1.106	0.708	1.335	nan	6.987	5.559	9.792	2.179	1.459	1.353
1860	chr10	127706990	127710059	+	0	NA	intron (NM_001081219, intron 7 of 26)	intron (NM_001081219, intron 7 of 26)	3268	NM_001081219	432516	Mm.90450	NM_001081219	ENSMUSG00000025401	Myo1a	BBM-I|Myhl	myosin IA	protein-coding	6.037	nan	2.119	5.484	4.884	4.133	3.229	4.317	3.391	4.513	2.880	2.792	2.856	5.410	3.824	4.839	4.471	4.391	3.713	2.995	1.788	2.633	nan	2.971	4.936
4829	chr14	73510902	73512096	+	0	NA	intron (NM_026119, intron 2 of 6)	intron (NM_026119, intron 2 of 6)	1450	NM_026119	67381	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	2.285	1.982	0.965	2.943	2.215	0.944	2.184	3.300	3.164	2.494	6.969	3.206	3.306	4.422	4.188	2.798	1.598	2.385	5.934	2.547	1.661	3.035	5.260	3.640	3.566
8270	chr2	59551282	59552662	+	0	NA	Intergenic	B2_Mm1t|SINE|B2	-60070	NM_198294	66860	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	2.952	0.564	0.450	2.774	0.632	0.592	1.675	nan	1.689	1.785	2.209	0.961	2.001	3.278	1.306	2.208	1.842	2.651	0.880	1.033	0.191	1.006	0.769	0.640	1.487
8737	chr2	144092398	144097092	+	0	NA	Intergenic	Intergenic	61643	NM_207275	403171	Mm.389362	NM_207275	ENSMUSG00000037307	Banf2	4930517K23Rik|Baf-L|Baf-like|Gm115	barrier to autointegration factor 2	protein-coding	8.235	12.992	5.482	7.422	3.638	2.396	6.072	7.476	5.715	7.994	4.540	3.743	6.729	6.126	7.131	8.589	6.422	8.554	nan	2.963	2.948	4.320	2.376	3.404	8.549
9615	chr3	101634276	101640973	+	0	NA	Intergenic	B4A|SINE|B4	-32917	NM_144900	11928	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	3.023	1.046	0.622	1.367	2.512	1.524	5.385	5.521	1.247	1.581	nan	1.160	3.698	5.767	3.452	nan	3.087	2.277	0.889	0.975	0.622	0.503	1.013	0.737	3.166
12571	chr6	108651838	108657197	+	0	NA	intron (NR_104577, intron 1 of 6)	PB1D9|SINE|Alu	-6112	NM_011498	20893	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	4.663	1.623	1.066	3.037	7.618	7.223	7.296	6.787	4.557	4.041	3.351	4.539	6.319	6.681	4.682	5.834	4.999	4.696	nan	1.586	1.505	0.886	1.556	1.638	nan
12226	chr6	50415785	50418113	+	0	NA	intron (NM_001347213, intron 2 of 23)	intron (NM_001347213, intron 2 of 23)	-34112	NM_027881	71720	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	0.584	0.655	0.500	0.856	0.082	0.054	0.834	1.355	1.277	1.169	1.428	0.782	4.147	5.602	2.800	1.473	1.115	2.335	nan	0.477	0.216	0.674	0.502	0.275	1.931
11959	chr5	147874995	147876078	+	0	NA	3' UTR (NM_025624, exon 6 of 6)	3' UTR (NM_025624, exon 6 of 6)	14908	NM_025624	66537	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	4.611	8.726	2.876	6.461	4.459	1.432	1.422	2.481	3.653	4.420	1.043	0.544	1.514	3.888	3.144	4.057	1.304	6.038	0.960	0.758	0.113	0.722	0.437	0.347	2.201
5379	chr15	77135296	77138037	+	0	NA	intron (NM_053104, intron 2 of 13)	B3|SINE|B2	17146	NM_001110830	93686	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	9.277	nan	1.363	9.044	4.860	2.997	10.386	12.529	4.101	11.384	nan	3.413	8.034	10.139	8.516	8.628	7.597	8.212	6.471	5.466	4.462	7.659	5.775	7.240	11.088
10471	chr4	120596734	120598091	+	0	NA	intron (NM_001101603, intron 1 of 2)	B3|SINE|B2	8667	NM_001101603	667063	Mm.90231	NM_001101603	ENSMUSG00000091297	Gm8439	EG667063|Gm1664	predicted gene 8439	protein-coding	8.284	9.622	6.196	8.179	3.881	2.774	6.504	6.254	5.553	6.446	6.123	4.837	6.511	8.849	7.085	7.698	5.585	7.326	6.920	5.210	5.273	8.015	5.577	4.637	10.375
14145	chr8	35732263	35735917	+	0	NA	Intergenic	Intergenic	92469	NM_027998	71908	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	3.812	6.646	4.059	0.676	1.150	0.338	4.962	5.568	2.193	1.839	0.921	1.084	3.512	3.698	4.521	5.757	4.200	3.319	0.628	1.084	0.587	1.292	0.789	0.568	5.312
8277	chr2	60047075	60050363	+	0	NA	intron (NM_001001182, intron 2 of 35)	intron (NM_001001182, intron 2 of 35)	77021	NM_001001182	407823	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	10.722	9.310	3.997	10.068	6.605	5.686	7.635	10.416	6.539	13.138	8.239	4.016	9.110	9.924	8.236	11.145	9.322	9.410	4.317	2.837	4.231	5.292	4.231	5.288	13.097
4477	chr14	14843857	14848827	+	0	NA	intron (NM_001195229, intron 9 of 34)	ORR1D1|LTR|ERVL-MaLR	25527	NM_001195229	674895	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	4.771	6.585	1.807	7.340	4.276	3.681	4.793	8.388	nan	9.399	5.049	2.753	6.057	7.869	7.910	8.797	4.498	6.786	2.934	1.320	2.257	nan	1.818	2.520	10.013
14911	chr9	21668208	21672023	+	0	NA	intron (NM_001174079, intron 21 of 33)	intron (NM_001174079, intron 21 of 33)	-53461	NM_001252658	16835	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	1.830	0.982	0.324	2.271	1.253	1.342	1.402	1.104	1.694	1.606	1.071	1.077	0.705	1.003	1.096	1.641	0.918	1.788	2.917	4.356	5.006	4.747	3.514	3.447	1.730
6099	chr16	45829252	45833594	+	0	NA	intron (NM_001252442, intron 1 of 18)	intron (NM_001252442, intron 1 of 18)	12955	NM_153412	208177	Mm.211477	NM_153412	ENSMUSG00000033149	Phldb2	AV253284|C820004H04Rik|LL5b|LL5beta	pleckstrin homology like domain, family B, member 2	protein-coding	5.784	0.669	0.502	2.771	4.951	1.878	5.827	5.875	3.094	2.816	1.628	2.041	4.429	4.857	5.189	6.753	4.307	6.623	1.383	1.695	0.634	1.089	2.576	1.581	3.606
9441	chr3	88292534	88302704	+	0	NA	promoter-TSS (NM_029801)	promoter-TSS (NM_029801)	484	NM_009836	12462	Mm.256034	NM_009836	ENSMUSG00000001416	Cct3	AL024092|Cctg|Tcp1-rs3|TriC-P5	chaperonin containing Tcp1, subunit 3 (gamma)	protein-coding	7.278	2.451	1.014	7.148	6.249	4.607	8.057	7.597	5.465	5.720	7.993	5.291	7.076	9.133	6.910	nan	5.285	7.083	nan	2.639	3.263	4.381	3.344	3.739	7.832
1817	chr10	121778650	121781687	+	0	NA	TTS (NM_001081037)	TTS (NM_001081037)	40231	NM_173022	270802	Mm.209172	NM_173022	ENSMUSG00000053684	BC048403	E030027L10	cDNA sequence BC048403	protein-coding	5.983	0.429	0.172	1.514	1.284	0.606	4.671	4.718	1.805	1.818	0.358	0.334	7.681	5.437	6.366	5.568	4.562	4.028	0.521	0.331	0.121	0.876	0.590	0.385	5.936
7499	chr19	5910463	5914332	+	0	NA	intron (NM_011262, intron 1 of 10)	CpG	474	NM_011262	19708	Mm.2651	NM_011262	ENSMUSG00000024826	Dpf2	2210010M07Rik|BAF45D|Req|ubi-d4	D4, zinc and double PHD fingers family 2	protein-coding	7.832	7.229	3.618	7.267	5.264	2.670	6.834	8.276	5.195	6.202	5.016	3.429	4.614	7.611	6.342	7.339	7.923	7.261	2.504	3.145	2.461	4.018	4.192	3.010	9.579
5300	chr15	73321678	73326363	+	0	NA	intron (NM_001130409, intron 6 of 29)	intron (NM_001130409, intron 6 of 29)	-69138	NR_029561	387169		NR_029561	ENSMUSG00000065612	Mir151	Mirn151|mir-151|mmu-mir-151	microRNA 151	ncRNA	4.264	6.050	1.729	5.929	1.834	0.787	nan	3.609	2.706	2.817	nan	1.014	2.349	2.685	2.900	3.354	nan	4.694	1.035	0.869	0.632	nan	0.695	0.573	4.119
12837	chr6	144659687	144661207	+	0	NA	Intergenic	Intergenic	-12421	NR_040519	66760	Mm.233631	NR_040519	ENSMUSG00000085785	Sox5os3	4933425H06Rik	SRY (sex determining region Y)-box 5, opposite strand 3	ncRNA	2.629	1.098	0.516	4.014	2.771	1.401	2.062	1.834	1.787	2.049	1.323	0.890	nan	1.834	2.463	2.257	1.372	2.898	1.095	nan	0.985	nan	0.591	0.697	1.492
14025	chr8	12740016	12741702	+	0	NA	Intergenic	ID_B1|SINE|B4	-16157	NM_015804	50770	Mm.257837	NM_015804	ENSMUSG00000031441	Atp11a	4930558F19Rik|AU040868|Atpc1h|Ih	ATPase, class VI, type 11A	protein-coding	6.084	0.327	0.386	1.578	2.562	1.637	3.086	3.292	2.866	2.496	5.616	1.068	5.405	4.288	2.726	3.472	4.742	4.949	0.827	0.885	0.524	0.702	0.937	0.672	2.537
11693	chr5	123463524	123478310	+	0	NA	Intergenic	LTR16B2|LTR|ERVL	11184	NM_029594	76399	Mm.75049	NM_029594	ENSMUSG00000029437	Il31	1700013B14Rik	interleukin 31	protein-coding	6.416	3.724	1.665	6.244	5.222	4.163	4.738	4.583	4.886	nan	3.011	2.370	4.402	6.738	nan	6.401	nan	5.984	nan	1.755	2.347	1.837	nan	1.554	6.578
6795	chr17	66401551	66403445	+	0	NA	intron (NM_001114098, intron 3 of 14)	intron (NM_001114098, intron 3 of 14)	47252	NM_172963	68617	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding	2.991	0.859	0.275	2.177	2.860	1.594	2.586	2.279	2.688	2.184	0.420	0.679	2.985	4.308	3.261	3.634	3.581	3.304	1.628	0.493	0.309	0.826	0.552	0.666	2.341
2707	chr11	96722659	96725640	+	0	NA	intron (NM_001033186, intron 10 of 12)	intron (NM_001033186, intron 10 of 12)	53406	NM_028965	74479	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	4.972	nan	0.918	3.722	1.611	0.979	4.149	3.214	2.947	4.357	2.266	1.378	3.753	5.376	4.077	4.796	2.145	3.584	1.575	nan	1.560	4.535	nan	nan	4.628
6078	chr16	44130860	44133946	+	0	NA	intron (NM_007508, intron 1 of 14)	intron (NM_007508, intron 1 of 14)	6616	NM_007508	11964	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	6.967	0.914	0.987	2.789	4.903	3.667	4.703	6.311	3.657	3.821	3.618	2.874	5.681	6.290	3.584	4.380	4.989	6.055	2.970	1.768	1.112	1.558	2.590	1.546	2.671
4854	chr14	76152700	76154749	+	0	NA	Intergenic	Lx4B|LINE|L1	42833	NM_013745	27275	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	6.097	7.855	2.138	7.258	2.816	1.765	4.397	8.349	4.620	9.620	4.612	4.028	5.062	6.985	6.714	7.842	2.756	7.173	4.243	2.321	1.405	4.210	2.128	2.333	9.953
3998	chr13	38235330	38238157	+	0	NA	Intergenic	L1MA5A|LINE|L1	31804	NM_026382	67797	Mm.250783	NM_026382	ENSMUSG00000021431	Snrnp48	1110050F08Rik|6530403A03Rik|C6orf151	small nuclear ribonucleoprotein 48 (U11/U12)	protein-coding	2.991	nan	0.312	1.865	2.288	1.611	nan	nan	nan	nan	5.927	1.975	2.910	4.401	3.111	nan	2.956	nan	2.500	2.019	1.725	2.479	2.450	2.117	nan
12236	chr6	51953653	51957523	+	0	NA	intron (NM_018773, intron 4 of 12)	Lx2B2|LINE|L1	56961	NM_018773	54353	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	4.932	1.420	0.784	7.004	2.383	1.036	1.512	1.250	3.843	2.913	1.332	0.799	1.331	2.237	1.798	3.155	2.112	5.161	nan	1.184	0.700	1.089	0.527	0.484	2.677
11933	chr5	145069742	145085071	+	0	NA	Intergenic	PB1D10|SINE|Alu	-6463	NM_019767	56443	Mm.371610	NM_019767	ENSMUSG00000029621	Arpc1a	0610010H08Rik|1110030K07Rik|41kDa|AA407347|Sid32|Sid329	actin related protein 2/3 complex, subunit 1A	protein-coding	3.847	0.646	0.443	nan	4.665	3.611	6.555	5.783	nan	4.818	3.770	3.658	4.920	7.189	7.135	nan	4.432	6.038	2.507	0.951	0.943	1.697	2.225	1.900	nan
671	chr1	137074113	137081199	+	0	NA	Intergenic	RSINE1|SINE|B4	-117208	NM_030676	26424	Mm.16794	NM_030676	ENSMUSG00000026398	Nr5a2	AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B	nuclear receptor subfamily 5, group A, member 2	protein-coding	2.249	0.611	0.300	nan	1.228	0.727	1.590	3.907	2.200	2.045	2.910	2.974	2.322	nan	2.124	nan	1.240	2.492	6.397	2.829	2.679	8.625	4.108	3.578	nan
1511	chr10	80595591	80605983	+	0	NA	Intergenic	ZP3AR|Satellite|Satellite	-2093	NM_001100606	100113398	Mm.273170	NM_001100606	ENSMUSG00000035370	Adat3	A430024H01Rik	adenosine deaminase, tRNA-specific 3	protein-coding	7.933	9.257	3.492	9.329	4.744	3.936	6.685	7.030	4.880	9.031	5.993	4.820	5.539	8.141	nan	8.188	5.985	6.857	nan	1.629	3.125	3.475	2.177	3.141	11.460
6317	chr17	7064244	7066976	+	0	NA	intron (NM_001033442, intron 2 of 3)	L1MB3|LINE|L1	40067	NM_001033442	381059	Mm.490353	NM_001033442	ENSMUSG00000095720	Gm1604b	ENSMUSG00000073470|Gm1604	predicted gene 1604b	protein-coding	3.827	1.522	0.476	4.536	1.746	0.972	8.175	5.881	3.007	2.286	7.222	3.358	4.500	3.967	7.408	10.087	7.593	4.714	nan	1.621	0.942	3.107	1.083	1.211	7.812
5538	chr15	85820351	85828152	+	0	NA	Intergenic	RSINE1|SINE|B4	-2518	NM_011105	18766	Mm.89965	NM_011105	ENSMUSG00000052496	Pkdrej	-	polycystin (PKD) family receptor for egg jelly	protein-coding	3.888	1.622	0.503	3.339	2.710	1.557	nan	nan	nan	3.993	3.044	1.475	7.251	6.242	nan	nan	4.773	4.800	nan	1.479	1.428	nan	1.587	1.035	8.550
5857	chr16	19146526	19155522	+	0	NA	Intergenic	Intergenic	135717	NM_146451	258443	Mm.377506	NM_146451	ENSMUSG00000050742	Olfr164	MOR279-2	olfactory receptor 164	protein-coding	0.460	8.007	4.486	0.652	0.242	0.177	0.306	0.364	0.545	nan	0.278	0.190	0.246	0.275	0.410	nan	0.647	0.523	0.462	0.659	0.362	0.251	0.215	0.173	0.208
13070	chr7	29615545	29620494	+	0	NA	Intergenic	RLTR4_MM-int|LTR|ERV1	108996	NM_029714	76718	Mm.69030	NM_029714	ENSMUSG00000049123	Catsperg2	1700067C01Rik|CATSPERG	catsper channel auxiliary subunit gamma 2	protein-coding	1.120	1.102	0.794	0.901	0.618	0.574	1.517	5.342	2.280	1.464	0.828	3.894	3.139	3.845	1.837	2.233	0.980	1.791	1.269	0.841	0.575	0.565	1.014	0.646	1.996
2423	chr11	72301756	72304231	+	0	NA	intron (NM_001037713, intron 1 of 5)	intron (NM_001037713, intron 1 of 5)	1364	NM_001037713	327959	Mm.291131	NM_001037713	ENSMUSG00000040483	Xaf1	Fbox39	XIAP associated factor 1	protein-coding	2.614	3.335	0.572	4.695	1.429	0.644	2.939	4.114	3.334	7.144	5.254	2.419	2.611	5.025	4.257	3.811	2.363	4.504	6.328	3.144	2.530	3.946	nan	5.706	6.401
6488	chr17	29065950	29068925	+	0	NA	intron (NR_036469, intron 1 of 1)	B1_Mus1|SINE|Alu	11689	NR_036469	100504267	Mm.438550	NR_036469	ENSMUSG00000085912	Trp53cor1	Gm16197|OTTMUSG00000031656|linc-p21|lincRNA-p21	tumor protein p53 pathway corepressor 1	ncRNA	4.624	1.480	1.224	5.134	6.758	6.512	6.246	5.576	3.464	2.617	1.677	1.919	3.905	7.165	5.077	nan	4.685	3.580	4.141	3.328	5.271	5.316	4.085	5.502	5.400
12314	chr6	72183171	72186100	+	0	NA	Intergenic	MLTR14|LTR|ERV1	50942	NM_153778	71093	Mm.87449	NM_153778	ENSMUSG00000037621	Atoh8	4933425C05Rik|Hath6|Math6|bHLHa21|okadin	atonal bHLH transcription factor 8	protein-coding	2.668	4.388	1.004	5.892	1.445	1.078	10.958	4.374	3.291	6.137	1.465	1.366	5.681	6.585	9.615	6.999	3.043	6.544	0.779	0.824	1.602	2.500	0.594	1.025	8.221
663	chr1	136649679	136654557	+	0	NA	Intergenic	Intergenic	27217	NM_001160251	226442	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	4.892	1.223	0.295	5.064	2.329	1.003	4.768	4.838	3.804	7.203	0.889	0.788	7.701	7.814	6.177	8.179	4.152	4.332	2.283	1.019	1.031	3.543	0.866	0.593	6.422
4301	chr13	96598426	96600028	+	0	NA	intron (NM_023420, intron 4 of 17)	intron (NM_023420, intron 4 of 17)	56492	NM_023420	68018	Mm.24125	NM_023420	ENSMUSG00000021669	Col4a3bp	2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	protein-coding	2.901	0.620	1.011	0.644	0.755	0.240	3.394	4.180	2.199	1.892	4.407	2.834	2.539	4.239	1.558	2.476	nan	nan	0.726	1.056	1.170	0.443	2.146	1.094	0.988
14923	chr9	25057706	25063640	+	0	NA	Intergenic	RLTR16B_MM|LTR|ERVK	91108	NM_020586	80517	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	6.575	9.631	3.916	7.197	2.724	1.987	4.899	4.555	4.224	8.516	4.175	3.117	5.370	5.746	6.077	nan	4.672	6.875	4.249	2.716	2.614	4.198	3.066	3.693	9.968
14723	chr8	124953520	124957383	+	0	NA	Intergenic	RSINE1|SINE|B4	-6197	NM_053207	112405	Mm.140619	NM_053207	ENSMUSG00000031987	Egln1	AI503754|C1orf12|HIF-PH2|HPH-2|Hif-p4h-2|ORF13|Phd2|SM-20	egl-9 family hypoxia-inducible factor 1	protein-coding	8.458	16.019	5.092	7.857	2.668	1.294	nan	6.264	4.145	5.610	4.768	1.871	5.112	6.611	6.656	8.470	4.414	6.578	nan	1.927	1.774	nan	1.478	nan	11.177
5050	chr15	10758312	10764820	+	0	NA	intron (NR_045063, intron 2 of 6)	intron (NR_045063, intron 2 of 6)	46666	NR_045065	75259	Mm.33928	NR_045063	ENSMUSG00000097058	4930556M19Rik	1700009D01Rik|C130022M03Rik	RIKEN cDNA 4930556M19 gene	ncRNA	4.355	0.765	0.588	2.657	4.151	2.012	7.099	8.026	4.046	5.657	1.007	1.596	7.870	7.301	6.799	6.127	5.510	5.547	0.544	0.571	0.417	0.365	0.450	0.188	2.739
11745	chr5	128100820	128103682	+	0	NA	intron (NM_172885, intron 3 of 8)	Lx8|LINE|L1	330826	NM_172885	243274	Mm.447698	NM_172885	ENSMUSG00000034310	Tmem132d	C630028F04Rik	transmembrane protein 132D	protein-coding	1.851	6.176	4.536	1.312	1.090	0.674	1.752	1.148	1.473	nan	2.906	0.724	0.938	1.633	nan	1.856	nan	nan	nan	0.865	0.671	0.491	nan	0.589	nan
10922	chr4	149978090	149984039	+	0	NA	3' UTR (NM_173371, exon 5 of 5)	3' UTR (NM_173371, exon 5 of 5)	22172	NM_001291004	100198	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	1.453	nan	0.879	1.661	1.130	0.892	1.177	1.534	1.701	2.049	0.958	0.655	1.304	1.992	1.784	2.315	1.390	2.072	3.650	1.074	0.720	5.383	1.677	1.203	2.402
4326	chr13	99735752	99737642	+	0	NA	Intergenic	PB1D10|SINE|Alu	163986	NM_013732	27220	Mm.75498	NM_013732	ENSMUSG00000021647	Cartpt	Cart	CART prepropeptide	protein-coding	2.727	2.060	1.304	1.805	0.760	0.655	1.083	2.300	3.378	3.172	1.169	0.636	2.619	4.141	2.401	4.259	2.581	2.575	0.473	0.356	0.223	0.505	0.418	0.302	3.464
5184	chr15	57526236	57527684	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-49335	NM_172378	210463	Mm.26555	NM_172378	ENSMUSG00000022366	Slc22a22	oat-pg	solute carrier family 22 (organic cation transporter), member 22	protein-coding	11.826	20.038	9.998	18.483	12.430	8.961	16.919	16.701	9.613	21.748	13.923	9.900	15.807	19.036	14.962	13.308	17.459	13.044	7.962	5.710	8.697	9.610	7.000	12.383	20.984
4295	chr13	96049260	96053474	+	0	NA	intron (NM_029210, intron 2 of 12)	intron (NM_029210, intron 2 of 12)	81210	NM_029210	75209	Mm.40436	NM_029210	ENSMUSG00000051111	Sv2c	4930527L09Rik|AI841971	synaptic vesicle glycoprotein 2c	protein-coding	0.677	0.555	0.400	0.459	0.320	0.382	0.522	0.817	0.806	0.534	0.522	0.618	0.301	0.295	0.495	0.613	nan	nan	4.819	3.300	2.634	3.914	4.000	3.171	0.739
5802	chr16	11315422	11318226	+	0	NA	intron (NM_011608, intron 2 of 2)	intron (NM_011608, intron 2 of 2)	3015	NM_011608	21935	Mm.12935	NM_011608	ENSMUSG00000022496	Tnfrsf17	BCM|BCMA|Tnfrsf13|Tnfrsf13a	tumor necrosis factor receptor superfamily, member 17	protein-coding	4.375	2.221	1.332	2.107	1.252	0.707	4.281	3.325	2.228	2.048	0.917	0.698	6.712	5.827	5.900	6.320	4.260	4.021	1.502	1.568	0.668	0.796	0.966	0.736	5.037
1946	chr11	6303784	6307022	+	0	NA	intron (NM_001252287, intron 2 of 22)	intron (NM_001252287, intron 2 of 22)	12845	NM_001252288	18293	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	nan	3.126	0.621	4.588	1.871	1.048	5.354	4.573	3.448	4.208	3.622	1.458	4.253	6.584	4.773	6.678	2.994	5.613	3.930	nan	1.870	6.632	1.480	1.065	7.990
12386	chr6	86516523	86522343	+	0	NA	Intergenic	B2_Mm2|SINE|B2	6732	NM_011865	23983	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1	poly(rC) binding protein 1	protein-coding	5.367	3.161	1.504	5.618	5.494	3.951	6.137	6.422	4.724	5.506	6.031	3.016	5.259	8.691	5.439	7.357	4.016	5.227	nan	3.705	3.237	4.972	5.014	4.447	5.620
12015	chr5	152053286	152055043	+	0	NA	Intergenic	Intergenic	-402956	NM_027009	69263	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	2.055	0.854	0.430	nan	1.710	0.671	3.490	1.645	4.389	4.966	4.597	1.781	3.040	4.149	2.389	2.709	3.314	5.400	1.091	0.478	0.152	1.179	0.284	0.217	nan
11950	chr5	147103915	147107813	+	0	NA	intron (NM_181730, intron 2 of 2)	intron (NM_181730, intron 2 of 2)	28518	NM_009087	20018	Mm.317557	NM_009087	ENSMUSG00000029642	Polr1d	1110003G10Rik|AC19|RPA16|Rpo1-3	polymerase (RNA) I polypeptide D	protein-coding	7.418	1.059	0.545	4.527	3.633	2.374	10.197	6.349	6.573	6.675	1.145	0.982	9.725	8.560	10.721	9.917	7.708	8.588	2.075	1.678	1.019	1.702	1.923	1.781	7.504
2276	chr11	60148496	60154216	+	0	NA	intron (NM_001037764, intron 1 of 4)	intron (NM_001037764, intron 1 of 4)	11274	NM_001037764	19377	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	3.858	0.893	0.742	2.536	4.331	4.393	4.551	3.096	3.340	2.877	3.414	1.793	3.802	3.526	3.450	4.396	3.362	4.064	nan	1.665	2.378	1.716	2.045	2.635	nan
13997	chr8	11310011	11316936	+	0	NA	promoter-TSS (NM_009931)	promoter-TSS (NM_009931)	-647	NM_009931	12826	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	7.282	2.182	0.632	10.384	4.319	2.154	5.605	6.165	5.678	10.404	2.487	1.374	6.543	7.747	8.492	9.923	5.260	10.803	1.289	1.340	1.188	3.370	0.689	0.811	13.428
8444	chr2	91356439	91357899	+	0	NA	intron (NM_001311144, intron 3 of 8)	L1Md_F2|LINE|L1	87473	NM_175123	228356	Mm.386861	NM_175123	ENSMUSG00000040591	1110051M20Rik	AI586322	RIKEN cDNA 1110051M20 gene	protein-coding	4.029	0.473	0.534	2.105	1.191	0.769	2.895	3.678	3.012	2.702	1.684	1.272	2.624	3.255	2.607	3.297	3.411	3.199	1.045	0.962	1.076	2.185	1.084	1.105	2.710
14072	chr8	23915599	23920037	+	0	NA	intron (NM_001277239, intron 5 of 7)	intron (NM_001277239, intron 5 of 7)	248157	NM_177086	320158	Mm.121274	NM_177086	ENSMUSG00000037492	Zmat4	9630048M01Rik	zinc finger, matrin type 4	protein-coding	8.467	14.510	7.583	7.583	5.155	2.942	5.815	8.298	4.424	6.091	6.410	4.081	6.055	7.751	7.355	8.735	6.439	6.379	5.167	4.113	2.830	nan	4.757	3.648	8.438
3465	chr12	77983248	77986994	+	0	NA	Intergenic	LTR16A2|LTR|ERVL	-241534	NM_172952	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	5.297	0.674	0.665	3.150	5.141	3.706	3.020	4.862	3.796	3.874	2.969	1.079	2.603	nan	2.245	nan	3.615	5.096	0.730	0.930	0.701	0.650	0.724	0.814	3.410
8681	chr2	131870283	131874826	+	0	NA	Intergenic	Intergenic	-12807	NM_001166206	71995	Mm.22	NM_028045	ENSMUSG00000037482	Erv3	1600014E20Rik|AA389086|AI426069|AI448024|D19349	endogenous retroviral sequence 3	protein-coding	3.260	1.659	1.202	2.695	3.531	2.529	2.006	1.556	3.642	4.612	1.098	0.609	4.457	5.613	2.264	4.242	3.818	3.664	nan	1.035	1.025	1.361	0.985	1.034	2.571
3629	chr12	100499962	100502662	+	0	NA	intron (NM_001033213, intron 1 of 19)	intron (NM_001033213, intron 1 of 19)	19510	NM_001033213	104718	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	5.633	1.234	0.824	3.396	2.151	0.854	3.632	1.072	3.604	3.278	1.796	0.716	4.838	3.371	3.610	6.415	3.771	5.488	1.117	1.050	0.796	1.035	0.678	1.002	8.656
9518	chr3	94768391	94770844	+	0	NA	intron (NM_001037711, intron 12 of 20)	B1_Mur1|SINE|Alu	16898	NM_001293727	70737	Mm.87634	NM_001037711	ENSMUSG00000068876	Cgn	6330408J11Rik	cingulin	protein-coding	0.498	11.045	7.591	0.855	0.460	0.382	0.823	0.630	0.679	0.495	nan	0.492	0.292	0.877	0.699	nan	0.653	1.024	0.691	0.676	0.699	0.679	0.691	0.232	0.849
15435	chr9	102568719	102572551	+	0	NA	Intergenic	Intergenic	55489	NM_001301689	28135	Mm.38910	NM_001081122	ENSMUSG00000032534	Cep63	4921501M07|AL450317.13gm1|AW107703|CD20R|D9Mgc41|D9Mgc48e|ET2	centrosomal protein 63	protein-coding	0.566	0.499	0.571	0.612	0.727	0.407	0.415	0.496	0.769	0.592	0.341	0.146	0.283	0.429	0.595	0.583	0.547	1.005	3.125	2.933	1.775	2.205	6.047	4.746	1.008
5501	chr15	83179024	83182126	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-8367	NM_029787	109754	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	9.764	6.374	1.848	nan	3.590	1.674	9.162	17.231	5.536	6.061	4.564	4.411	11.895	10.311	10.156	9.216	7.783	8.477	6.302	4.448	2.269	8.427	6.487	5.172	10.438
14927	chr9	27458103	27462535	+	0	NA	Intergenic	Intergenic	63107	NM_001305058	75469	Mm.45824	NM_029299	ENSMUSG00000031991	Spata19	1700001L23Rik|AV047838|spergen-1	spermatogenesis associated 19	protein-coding	0.353	0.453	0.207	0.257	0.107	0.057	0.225	0.240	0.222	0.296	0.663	0.224	0.075	0.178	0.209	nan	0.285	0.435	3.003	1.451	0.539	5.172	1.586	1.136	0.450
9368	chr3	65777795	65779596	+	0	NA	intron (NM_001166659, intron 7 of 12)	intron (NM_001166659, intron 7 of 12)	112467	NM_001166659	624866	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	12.148	8.575	3.800	16.081	8.250	5.992	12.719	10.600	10.179	10.718	6.657	5.087	14.576	14.729	14.789	13.772	10.869	14.521	7.270	4.179	3.707	9.503	4.306	3.455	13.873
2644	chr11	94003669	94007673	+	0	NA	intron (NM_001199203, intron 1 of 29)	intron (NM_001199203, intron 1 of 29)	9580	NM_027569	70834	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	2.569	nan	0.208	2.194	1.220	0.862	2.451	3.187	1.857	1.674	1.909	1.896	2.458	2.939	3.442	4.312	nan	2.983	5.490	4.652	3.864	8.479	nan	nan	2.534
6678	chr17	46810183	46811772	+	0	NA	intron (NM_001100452, intron 6 of 10)	ID4|SINE|ID	20436	NM_001100452	210982	Mm.37642	NM_001100452	ENSMUSG00000036568	Gltscr1l	mKIAA0240	GLTSCR1-like	protein-coding	6.102	8.148	3.205	6.125	4.015	3.579	6.711	4.608	3.846	4.012	4.387	3.353	4.036	7.200	6.355	8.304	5.856	5.912	2.941	2.195	2.448	3.302	1.921	2.570	9.205
13956	chr7	152165479	152169224	+	0	NA	Intergenic	Intergenic	6852516	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	4.304	nan	0.445	nan	2.560	1.677	2.727	7.742	5.110	5.297	4.103	2.941	4.552	4.374	5.426	8.042	3.415	6.806	1.249	0.835	0.763	0.871	nan	0.489	6.850
6063	chr16	38620210	38622163	+	0	NA	intron (NM_020260, intron 6 of 11)	intron (NM_020260, intron 6 of 11)	58372	NM_026407	67846	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	8.614	0.885	0.534	5.570	4.432	2.597	2.748	4.485	5.083	8.036	0.890	0.415	7.536	10.888	7.369	10.189	5.526	9.443	0.692	0.873	0.606	1.179	0.388	0.809	10.086
12889	chr6	149097035	149100588	+	0	NA	intron (NM_177192, intron 1 of 20)	intron (NM_177192, intron 1 of 20)	2869	NM_177192	320560	Mm.426874	NM_177192	ENSMUSG00000030313	Dennd5b	9330160C06Rik|AI852444|D030011O10Rik|ENSMUSG00000072657|Gm17524	DENN/MADD domain containing 5B	protein-coding	2.968	0.766	0.705	2.509	4.211	3.773	8.239	11.328	2.948	nan	1.648	3.845	10.251	11.219	4.968	6.454	6.158	3.252	0.973	nan	0.801	nan	0.965	1.057	nan
5811	chr16	13535948	13539444	+	0	NA	TTS (NM_028761)	TTS (NM_028761)	-17277	NR_037997	70100	Mm.158330	NR_037997	ENSMUSG00000099411	2310015D24Rik	-	RIKEN cDNA 2310015D24 gene	ncRNA	3.273	1.592	0.562	1.973	1.441	1.021	4.798	3.781	3.210	3.632	1.131	1.437	6.345	5.615	3.411	6.476	2.989	4.427	0.786	0.783	0.771	2.237	0.674	0.542	5.859
13454	chr7	104600032	104604593	+	0	NA	Intergenic	Intergenic	-5133	NM_146820	258817	Mm.377706	NM_146820	ENSMUSG00000051182	Olfr655	MOR38-1	olfactory receptor 655	protein-coding	5.715	1.546	0.877	2.861	2.983	1.702	4.901	8.815	4.369	3.857	6.537	4.126	7.175	7.577	5.748	5.713	6.839	4.492	nan	1.981	1.382	1.336	2.536	2.170	7.049
3155	chr12	4192734	4194202	+	0	NA	intron (NM_001159537, intron 3 of 21)	MER58A|DNA|hAT-Charlie	-40559	NM_001204912	69709	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	2.414	1.024	0.434	1.693	1.854	0.750	3.924	2.389	0.911	0.959	0.799	0.502	2.215	3.607	2.432	1.987	1.935	1.891	0.600	0.880	0.604	0.770	0.419	0.582	2.139
8169	chr2	34657179	34659284	+	0	NA	Intergenic	ERVL-B4-int|LTR|ERVL	97001	NM_025709	66691	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	5.007	5.661	3.041	6.165	5.209	5.817	5.006	5.717	4.402	4.100	3.202	2.070	5.418	5.260	5.876	6.499	6.018	5.127	2.876	2.772	4.198	3.720	3.173	4.645	6.543
7510	chr19	6981970	6984797	+	0	NA	intron (NM_001185164, intron 6 of 6)	intron (NM_001185164, intron 6 of 6)	-2922	NM_001166368	14227	Mm.4234	NM_008020	ENSMUSG00000056629	Fkbp2	13kDa|FKBP-2|mFKBP13|mFKBP2	FK506 binding protein 2	protein-coding	11.154	10.513	3.598	9.401	5.262	2.953	9.491	13.570	5.003	8.562	7.754	4.259	6.330	11.959	8.713	10.205	8.281	8.179	2.453	3.788	2.443	8.139	3.998	2.683	15.604
11854	chr5	138110558	138115997	+	0	NA	Intergenic	MTE2b|LTR|ERVL-MaLR	-3628	NM_001044703	22697	Mm.2760	NM_011757	ENSMUSG00000037017	Zscan21	AI326272|CTfin51|RU49|Zfp-38|Zfp38|Zipro1	zinc finger and SCAN domain containing 21	protein-coding	4.493	1.488	0.991	3.864	6.756	4.016	3.224	5.368	3.172	3.666	3.297	3.024	2.675	5.309	3.283	2.740	2.193	3.034	5.050	3.597	2.681	4.693	nan	5.331	2.917
7327	chr18	65182617	65197713	+	0	NA	intron (NM_001114386, intron 19 of 30)	intron (NM_001114386, intron 19 of 30)	-58696	NR_029600	387231		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	6.868	0.666	0.655	5.046	5.985	3.312	5.178	6.233	5.588	7.789	3.294	1.688	6.169	6.671	4.582	7.927	6.360	7.364	0.819	1.040	0.786	0.925	1.252	0.864	5.334
10508	chr4	124792111	124794687	+	0	NA	exon (NM_008385, exon 19 of 24)	exon (NM_008385, exon 19 of 24)	-9150	NM_008636	17764	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding	9.119	13.411	3.649	8.606	2.182	0.911	3.818	6.020	3.625	4.523	5.421	3.525	5.137	6.257	6.418	6.167	3.535	6.184	3.290	1.749	1.279	5.244	1.372	0.715	8.520
3280	chr12	35929886	35935522	+	0	NA	intron (NM_207531, intron 2 of 7)	MTC-int|LTR|ERVL-MaLR	7083	NM_207531	403205	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	7.015	nan	0.638	2.886	2.689	1.267	4.016	3.825	4.760	4.660	3.069	1.842	6.713	4.365	4.851	5.514	5.925	6.893	nan	0.431	0.296	0.387	0.511	0.273	3.651
13487	chr7	106665426	106668306	+	0	NA	Intergenic	L1_Mur2|LINE|L1	11619	NM_146453	258445	Mm.377507	NM_146453	ENSMUSG00000051680	Olfr693	MOR283-8	olfactory receptor 693	protein-coding	5.014	0.869	0.479	3.085	6.422	4.649	4.936	6.020	2.723	2.877	3.523	2.365	5.678	5.435	3.316	4.308	4.642	nan	nan	0.877	0.617	0.588	0.710	0.626	4.563
9809	chr3	132607953	132609626	+	0	NA	Intergenic	Intergenic	-21402	NM_001270430	433653		NM_001270430	ENSMUSG00000091721	Gimd1	EG433653|Gm5549	GIMAP family P-loop NTPase domain containing 1	protein-coding	3.094	0.567	0.270	4.194	2.181	0.818	2.017	2.497	3.319	3.874	0.870	0.769	3.121	4.569	2.270	3.083	nan	5.586	0.421	0.777	0.157	1.476	0.160	0.178	4.123
1465	chr10	77758207	77762687	+	0	NA	intron (NM_001287074, intron 1 of 11)	intron (NM_001287074, intron 1 of 11)	10878	NM_001101630	100041261	Mm.477434	NM_001101630	ENSMUSG00000095817	Gm3238	-	predicted gene 3238	protein-coding	8.404	10.355	3.318	8.278	5.693	3.688	5.399	7.207	5.475	8.297	2.783	1.508	6.391	9.542	7.612	8.381	5.920	7.754	2.445	3.029	2.642	6.289	2.138	2.024	10.707
2990	chr11	115865575	115867083	+	0	NA	Intergenic	Intergenic	-33810	NM_183259	66528	Mm.275740	NM_183259	ENSMUSG00000048442	Smim5	2210020M01Rik	small integral membrane protein 5	protein-coding	3.593	5.037	1.499	5.688	1.377	0.765	4.361	4.102	2.235	3.715	1.382	1.051	3.109	4.121	5.144	5.190	3.832	4.465	2.360	nan	0.554	4.384	3.229	2.083	6.682
7366	chr18	69751051	69757308	+	0	NA	Intergenic	ORR1A2|LTR|ERVL-MaLR	-171380	NM_201362	381175	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	6.545	10.556	6.735	5.910	4.095	1.908	2.097	2.100	3.614	4.241	2.930	1.882	2.249	3.441	2.884	3.045	2.676	4.757	4.094	4.334	2.852	3.994	2.962	2.140	2.582
10061	chr4	46661173	46663659	+	0	NA	Intergenic	Intergenic	-12217	NM_198664	381605	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	7.921	4.173	1.466	8.791	4.079	1.592	6.500	9.385	6.525	10.142	8.002	5.205	7.477	10.195	10.747	11.313	4.331	10.681	4.068	1.438	1.134	4.304	1.306	1.751	14.648
941	chr1	182301712	182308349	+	0	NA	Intergenic	Lx6|LINE|L1	4196	NR_015458	67330	Mm.331019	NR_015458	ENSMUSG00000100147	1700047M11Rik	-	RIKEN cDNA 1700047M11 gene	ncRNA	3.855	9.862	4.033	4.490	2.680	2.086	3.586	2.522	2.457	2.989	0.916	0.811	4.700	3.781	3.336	6.845	3.055	6.004	0.935	0.695	0.468	0.800	0.590	0.604	4.388
6826	chr17	71467035	71474330	+	0	NA	intron (NM_028887, intron 1 of 47)	RSINE1|SINE|B4	4661	NM_028887	74355	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	5.888	1.050	0.880	4.946	7.344	5.234	5.341	3.497	4.553	5.847	1.173	1.335	4.791	6.845	5.325	5.572	4.528	6.636	2.261	1.516	1.175	2.960	2.131	1.758	4.576
14730	chr8	125079594	125085973	+	0	NA	intron (NM_174853, intron 1 of 11)	MT2B1|LTR|ERVL	28588	NM_174854	244667	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	6.284	6.709	2.730	4.489	3.772	2.817	nan	5.334	3.294	3.433	2.262	1.229	3.743	3.459	nan	4.594	4.120	nan	nan	2.261	3.361	nan	1.320	nan	6.165
15025	chr9	44674167	44684680	+	0	NA	intron (NM_001277847, intron 1 of 13)	intron (NM_001277847, intron 1 of 13)	6190	NM_021481	58866	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding	1.070	8.724	4.792	1.140	0.607	0.502	0.594	0.829	1.111	0.951	0.588	0.565	0.584	0.608	nan	nan	0.682	1.179	1.068	0.924	0.763	nan	0.788	0.769	nan
9098	chr2	179829100	179835272	+	0	NA	intron (NM_001316723, intron 4 of 5)	intron (NM_001316723, intron 4 of 5)	144460	NM_001081092	228980	Mm.235542	NM_001081092	ENSMUSG00000039117	Taf4	135kDa|AI450312|TAFII130|TAFII135|Taf2c1|Taf4a	TATA-box binding protein associated factor 4	protein-coding	0.555	0.599	0.289	0.443	0.265	0.199	0.662	0.710	0.458	0.546	0.308	0.292	0.469	0.472	0.668	nan	0.616	nan	2.849	1.749	2.511	4.232	2.413	2.282	nan
8915	chr2	160147197	160148585	+	0	NA	Intergenic	Intergenic	131238	NR_040499	71613	Mm.98139	NR_040499	ENSMUSG00000086653	9130015L21Rik	-	RIKEN cDNA 9130015L21 gene	ncRNA	5.336	0.620	1.227	1.022	2.099	1.224	4.269	4.527	nan	2.400	1.487	2.015	nan	3.747	2.502	3.440	6.018	2.790	nan	4.024	1.393	0.682	3.410	2.660	nan
3436	chr12	75384021	75391249	+	0	NA	intron (NM_023275, intron 2 of 4)	intron (NM_023275, intron 2 of 4)	29146	NM_175644	217674	Mm.252250	NM_175644	ENSMUSG00000048982	Gphb5	OGH|Zlut1	glycoprotein hormone beta 5	protein-coding	0.355	0.576	0.376	0.335	0.079	0.051	0.300	0.265	0.306	0.198	0.243	0.234	0.180	nan	0.284	nan	0.495	0.467	3.490	1.724	0.819	5.686	1.607	0.993	0.582
4848	chr14	75335590	75337780	+	0	NA	intron (NM_026083, intron 16 of 18)	ID_B1|SINE|B4	51461	NR_030568	100124475		NR_030568	ENSMUSG00000077981	Mir466f-3	Mirn466f-3	microRNA 466f-3	ncRNA	1.793	7.735	5.664	1.224	1.436	0.468	0.486	2.093	1.574	1.978	1.746	0.975	0.716	0.989	1.318	1.881	1.172	1.891	0.346	0.814	0.649	0.377	0.198	0.172	0.948
11727	chr5	125341832	125344077	+	0	NA	Intergenic	Intergenic	-1860	NM_001205083	20778	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	4.546	9.512	2.368	6.722	2.209	1.829	6.885	4.690	2.413	nan	2.763	2.601	4.159	5.721	nan	6.745	3.659	nan	nan	1.534	4.635	7.711	nan	10.959	11.908
13695	chr7	125989753	125996604	+	0	NA	intron (NM_001101488, intron 2 of 6)	intron (NM_001101488, intron 2 of 6)	89233	NM_001101488	269994	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	3.858	2.486	0.604	3.140	1.390	0.717	4.588	6.462	2.151	2.009	3.781	1.560	4.934	4.437	nan	5.108	2.490	4.198	0.876	0.562	0.422	0.721	0.579	0.358	4.201
13347	chr7	86466657	86470247	+	0	NA	Intergenic	Lx5c|LINE|L1	3039	NM_001011767	257929	Mm.377305	NM_001011767	ENSMUSG00000020168	Olfr299	MOR221-2	olfactory receptor 299	protein-coding	1.493	1.205	0.711	1.459	2.107	1.501	2.429	2.958	2.913	1.948	2.452	5.927	1.738	2.976	2.717	1.735	nan	2.901	2.769	1.081	1.247	5.486	1.481	1.057	nan
1869	chr10	128018482	128027944	+	0	NA	intron (NM_008921, intron 7 of 12)	intron (NM_008921, intron 7 of 12)	7998	NM_008921	19075	Mm.2903	NM_008921	ENSMUSG00000025395	Prim1	AI324982	DNA primase, p49 subunit	protein-coding	8.178	nan	0.610	5.332	4.890	3.025	7.768	9.714	5.247	6.556	5.834	2.887	7.431	10.201	8.617	10.161	6.109	7.121	2.619	1.248	1.024	1.991	nan	1.715	13.346
10868	chr4	144843592	144845537	+	0	NA	Intergenic	MERVL-int|LTR|ERVL	-48263	NM_001172424	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	5.692	4.394	4.399	2.761	8.588	4.733	3.646	3.004	2.243	2.794	1.849	1.797	2.154	5.552	2.852	2.995	2.210	4.004	2.335	2.291	1.637	1.418	3.948	2.223	2.843
3190	chr12	15660161	15661687	+	0	NA	Intergenic	L1_Mus1|LINE|L1	140177	NR_105809	102465204		NR_105809	ENSMUSG00000098480	Mir6387	Gm27281|mmu-mir-6387	microRNA 6387	ncRNA	6.938	0.924	0.272	3.970	3.677	2.916	6.919	6.414	4.533	3.801	1.946	2.041	5.432	4.841	7.124	8.440	7.307	4.329	2.753	1.633	2.224	5.795	1.522	1.434	6.414
6860	chr17	75508803	75512903	+	0	NA	intron (NM_001166493, intron 10 of 16)	intron (NM_001166493, intron 10 of 16)	41093	NM_133747	72722	Mm.24641	NM_133747	ENSMUSG00000002017	Fam98a	2810405J04Rik|AL024114	family with sequence similarity 98, member A	protein-coding	1.017	1.047	0.812	0.920	0.800	0.362	nan	2.913	nan	1.214	6.245	4.454	2.418	2.799	1.661	nan	2.123	1.187	0.505	0.460	0.285	0.529	0.440	0.274	0.631
11551	chr5	110713472	110715698	+	0	NA	intron (NM_173066, intron 14 of 50)	RSINE1|SINE|B4	-48444	NR_105993	102466216		NR_105993	ENSMUSG00000099284	Mir7026	Gm27988|mmu-mir-7026	microRNA 7026	ncRNA	3.255	5.325	1.524	3.798	2.457	1.445	nan	3.968	2.428	3.872	2.180	1.474	2.858	5.342	4.049	4.329	3.228	3.653	nan	1.068	1.137	2.271	1.571	1.544	5.243
13340	chr7	85938139	85944193	+	0	NA	Intergenic	L1Md_F2|LINE|L1	20316	NM_001105187	546980	Mm.469905	NM_001105187	ENSMUSG00000090774	Vmn2r74	EG546980	vomeronasal 2, receptor 74	protein-coding	0.479	0.684	0.386	0.349	0.300	0.020	0.411	0.354	nan	0.361	0.307	0.214	0.325	0.353	0.475	nan	nan	nan	1.702	1.689	0.810	nan	0.761	0.410	nan
7096	chr18	32069791	32071373	+	0	NA	intron (NM_173441, intron 2 of 13)	intron (NM_173441, intron 2 of 13)	2848	NM_173441	73473	Mm.66853	NM_173441	ENSMUSG00000024384	Iws1	1700069O15Rik|3000008H23|AL117927|AW214353	IWS1, SUPT6 interacting protein	protein-coding	9.101	12.330	2.136	9.673	2.499	2.341	6.390	9.468	5.512	14.101	5.288	3.280	8.622	7.846	8.511	9.676	4.198	8.846	4.970	1.279	2.013	nan	2.133	3.350	14.791
15381	chr9	90102065	90103940	+	0	NA	intron (NM_024431, intron 3 of 11)	intron (NM_024431, intron 3 of 11)	11818	NM_001039147	21761	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	3.468	1.864	0.766	2.507	1.621	0.628	2.481	3.404	2.450	2.662	1.193	1.060	4.159	3.233	2.735	4.328	2.772	3.478	0.544	0.135	0.520	0.481	0.516	0.156	4.891
3481	chr12	80396441	80398729	+	0	NA	intron (NM_177267, intron 5 of 8)	intron (NM_177267, intron 5 of 8)	-5848	NR_028544	100217447	Mm.453532	NR_028544	ENSMUSG00000088158	Scarna3b	MBI-100	small Cajal body-specific RNA 3B	ncRNA	7.920	6.794	2.024	3.867	3.197	1.062	3.850	4.264	3.564	3.742	3.141	1.935	5.930	6.670	6.551	8.146	6.650	5.262	2.618	2.463	0.925	3.605	2.323	1.281	7.333
8549	chr2	118226948	118228412	+	0	NA	intron (NM_027759, intron 9 of 10)	L1_Mus2|LINE|L1	29286	NM_027759	71313	Mm.85046	NM_027759	ENSMUSG00000027344	Fsip1	1700012M13Rik|4933432K11Rik	fibrous sheath-interacting protein 1	protein-coding	3.336	0.836	0.609	2.969	1.024	0.399	4.137	4.825	3.068	5.321	0.876	0.813	5.331	3.684	4.203	7.746	4.058	6.533	0.834	0.298	0.502	1.432	0.360	0.260	6.445
3583	chr12	87103231	87107849	+	0	NA	Intergenic	B1_Mur3|SINE|Alu	-3001	NM_001294308	64242	Mm.41395	NM_022414	ENSMUSG00000021032	Ngb	-	neuroglobin	protein-coding	4.661	0.463	0.361	1.631	1.870	1.374	6.394	1.558	1.405	1.705	0.364	0.430	3.673	3.320	3.963	4.811	4.755	3.783	0.798	0.725	0.938	1.724	0.569	0.603	5.528
4149	chr13	54501302	54503437	+	0	NA	Intergenic	Intergenic	-1436	NM_176987	319719	Mm.376151	NM_176987	ENSMUSG00000043183	Simc1	4732471D19Rik	SUMO-interacting motifs containing 1	protein-coding	nan	0.640	0.757	0.304	0.198	0.110	0.550	0.626	0.450	0.308	0.307	0.049	0.245	nan	0.250	nan	0.275	nan	4.959	4.859	3.898	4.450	6.612	5.142	nan
7798	chr19	44457198	44458488	+	0	NA	Intergenic	(T)n|Simple_repeat|Simple_repeat	-35629	NM_011720	22423	Mm.88365	NM_011720	ENSMUSG00000036961	Wnt8b	-	wingless-type MMTV integration site family, member 8B	protein-coding	1.291	5.348	5.500	nan	1.559	1.238	1.401	0.998	1.440	1.392	0.330	0.792	0.800	2.311	0.684	1.558	1.633	nan	0.217	0.424	0.645	0.344	0.711	1.208	1.026
102	chr1	36930963	36932762	+	0	NA	intron (NM_018872, intron 1 of 40)	B2_Mm1a|SINE|B2	7665	NM_018872	56030	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	6.697	2.350	1.197	4.526	3.021	0.888	4.979	5.993	4.624	4.626	3.812	3.608	6.829	4.732	5.869	7.958	5.116	7.199	2.286	1.459	0.583	1.882	1.849	0.836	4.897
8673	chr2	131088328	131091592	+	0	NA	Intergenic	Intergenic	-3195	NM_011426	20612	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	8.419	8.470	3.934	7.043	5.537	5.419	5.531	6.923	5.102	7.256	4.971	4.569	5.916	5.980	5.732	6.867	6.654	7.049	5.692	4.878	4.746	5.772	6.295	7.116	8.480
14651	chr8	120072111	120074385	+	0	NA	Intergenic	Intergenic	28224	NM_133967	102193	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	1.812	2.574	2.523	1.025	1.516	0.751	0.898	1.241	0.688	0.946	0.889	0.436	0.573	0.588	0.858	nan	0.871	0.633	1.159	4.651	4.552	2.676	0.833	1.230	0.833
12108	chr6	30493413	30499199	+	0	NA	intron (NM_001347087, intron 7 of 13)	PB1D11|SINE|Alu	13467	NM_001347087	72649	Mm.45418	NM_178625	ENSMUSG00000029782	Tmem209	2700094F01Rik|AI428435	transmembrane protein 209	protein-coding	0.732	1.262	1.078	0.688	0.642	0.312	0.434	0.491	0.487	0.453	0.676	0.545	0.208	0.510	0.521	nan	0.932	nan	7.752	6.894	4.694	10.584	6.651	5.063	0.572
8454	chr2	92105980	92107218	+	0	NA	Intergenic	RMER12|LTR|ERVK	-77583	NM_138755	192285	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	2.826	1.108	0.736	1.963	1.056	0.537	3.671	4.622	2.127	2.577	1.226	1.074	4.863	4.191	3.859	5.257	4.772	4.994	1.065	0.221	0.198	0.940	0.478	0.257	2.315
15073	chr9	50641481	50645445	+	0	NA	intron (NM_145614, intron 10 of 13)	intron (NM_145614, intron 10 of 13)	16317	NM_145614	235339	Mm.285076	NM_145614	ENSMUSG00000000168	Dlat	6332404G05Rik|DLTA|PDC-E2	dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	protein-coding	5.174	1.990	0.743	3.699	2.050	1.106	1.999	4.697	2.275	4.635	1.989	0.628	3.834	6.786	4.839	6.059	3.567	2.312	0.709	0.789	0.325	nan	0.583	0.229	6.902
5414	chr15	78808396	78810216	+	0	NA	Intergenic	Intergenic	-6264	NM_130859	105844	Mm.17629	NM_130859	ENSMUSG00000033170	Card10	AI449026|Bimp1|Carma3	caspase recruitment domain family, member 10	protein-coding	3.005	nan	0.425	2.955	1.797	1.235	6.610	8.092	1.630	2.594	nan	0.736	5.698	5.397	4.298	5.403	3.545	3.545	1.747	1.371	1.044	1.552	1.578	1.975	5.121
1218	chr10	39378185	39381122	+	0	NA	intron (NM_001122892, intron 1 of 12)	intron (NM_001122892, intron 1 of 12)	9854	NM_001122893	14360	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	4.967	1.205	0.985	3.507	2.594	0.541	3.811	3.933	2.941	2.729	1.167	0.930	4.646	5.399	6.511	5.533	4.546	5.154	2.996	2.021	1.307	4.723	2.420	1.663	7.157
3483	chr12	80483958	80486492	+	0	NA	intron (NM_133798, intron 4 of 8)	HAL1|LINE|L1	-21981	NR_045490	69522	Mm.390530	NR_045490		2310002D06Rik	-	RIKEN cDNA 2310002D06 gene	ncRNA	2.337	2.096	0.797	2.975	2.743	1.088	3.318	2.075	2.210	2.064	2.819	1.234	2.709	3.845	2.304	nan	5.437	2.710	1.076	1.849	0.773	0.838	1.067	0.961	1.697
4227	chr13	64347449	64350209	+	0	NA	Intergenic	Intergenic	21691	NM_009984	13039	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	1.808	9.245	5.681	2.081	0.962	0.281	0.826	1.333	1.212	1.529	1.170	0.851	1.143	1.398	1.878	nan	0.815	2.286	2.501	1.719	0.884	1.610	5.440	3.740	2.687
11866	chr5	139464284	139466780	+	0	NA	Intergenic	RLTR33|LTR|ERVK	-4998	NM_028469	73212	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	3.882	0.988	0.418	2.940	1.418	0.535	4.349	2.315	2.096	2.228	3.195	1.592	3.363	4.773	3.440	4.966	3.443	3.560	1.663	0.963	0.540	1.518	nan	1.314	5.784
2398	chr11	70050369	70053563	+	0	NA	Intergenic	Intergenic	-2158	NM_001291131	11889	Mm.6559	NM_009714	ENSMUSG00000020884	Asgr1	ASGPR1|Asgr|Asgr-1|HL-1	asialoglycoprotein receptor 1	protein-coding	11.526	13.578	3.768	12.220	7.124	3.961	7.804	8.561	6.359	11.035	8.999	3.766	7.307	11.971	10.136	12.137	6.920	9.612	6.241	4.141	3.923	8.203	nan	4.160	13.763
7877	chr19	53617002	53618987	+	0	NA	intron (NM_007790, intron 4 of 28)	intron (NM_007790, intron 4 of 28)	17598	NM_007790	13006	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	3.079	1.766	0.686	1.245	1.262	0.770	1.665	4.571	1.827	2.239	0.785	1.068	2.655	4.197	nan	3.060	1.922	3.343	0.236	0.279	0.378	0.316	0.374	0.207	5.622
5036	chr15	9008239	9011515	+	0	NA	intron (NM_198024, intron 6 of 13)	RLTR20B5_MM|LTR|ERVK	41928	NM_198024	223332	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	6.026	0.890	0.606	2.662	1.762	0.696	6.394	5.592	2.622	2.945	0.589	0.944	6.938	4.227	5.424	5.099	7.181	4.894	1.516	1.266	0.526	0.405	1.749	1.034	5.095
6743	chr17	56170232	56176859	+	0	NA	3' UTR (NM_025566, exon 2 of 2)	3' UTR (NM_025566, exon 2 of 2)	10375	NM_080837	28106	Mm.294870	NM_080837	ENSMUSG00000019579	Mydgf	D17Wsu104e|Il25|Ly6elg	myeloid derived growth factor	protein-coding	nan	nan	3.413	4.855	4.210	2.350	6.627	5.180	3.387	4.268	2.949	2.125	3.210	5.235	5.710	6.097	4.486	4.906	2.621	2.130	1.829	2.439	1.913	2.007	6.445
259	chr1	64930709	64936088	+	0	NA	intron (NM_001039493, intron 2 of 7)	intron (NM_001039493, intron 2 of 7)	23426	NM_001039493	241075	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	5.971	2.480	1.330	2.919	2.591	1.176	4.719	2.975	3.376	3.326	1.051	1.298	4.765	4.534	4.516	7.222	5.101	5.118	2.050	1.047	0.754	1.902	1.520	1.463	3.835
14607	chr8	113464840	113466484	+	0	NA	Intergenic	Intergenic	-51620	NR_110476	78048	Mm.252797	NR_110476		4930571O06Rik	-	RIKEN cDNA 4930571O06 gene	ncRNA	8.176	3.607	2.142	5.523	8.788	7.080	4.538	8.777	3.024	2.510	8.195	4.879	4.143	5.517	5.522	5.173	4.187	4.722	1.885	1.736	1.218	2.382	0.824	1.088	8.336
5290	chr15	72890647	72892588	+	0	NA	intron (NM_001164642, intron 16 of 16)	intron (NM_001164642, intron 16 of 16)	-81293	NR_002864	353342	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	6.001	5.606	2.555	6.212	3.456	2.096	6.243	7.254	3.623	5.891	4.086	2.302	5.320	6.044	4.545	6.478	3.732	4.836	3.451	2.843	3.366	3.828	2.835	3.108	7.075
6194	chr16	91377814	91380636	+	0	NA	intron (NM_001347258, intron 1 of 7)	intron (NM_001347258, intron 1 of 7)	6442	NM_001110498	15976	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	7.937	2.780	1.543	5.623	5.733	3.178	5.865	7.381	3.139	3.573	1.572	1.753	4.805	5.270	3.961	6.023	5.827	nan	1.063	2.296	2.098	nan	2.149	1.139	6.278
6518	chr17	30332314	30335707	+	0	NA	intron (NM_172618, intron 7 of 11)	intron (NM_172618, intron 7 of 11)	62170	NR_030688	623169	Mm.440508	NR_030688		Gm6402	EG623169	ribosomal protein S17 pseudogene	pseudo	1.990	4.285	1.756	2.673	1.550	1.188	2.302	2.890	2.109	2.085	2.500	1.539	1.650	1.637	3.718	nan	1.501	2.138	4.309	1.663	1.623	6.137	2.302	2.059	2.993
7752	chr19	38097067	38118371	+	0	NA	intron (NM_181748, intron 2 of 2)	intron (NM_181748, intron 2 of 2)	10640	NM_181748	107221	Mm.35288	NM_181748	ENSMUSG00000054200	Ffar4	AI552415|GT01|Gpr120|Gpr129|KPG_013|O3far1|Pgr4	free fatty acid receptor 4	protein-coding	nan	2.414	1.130	3.975	5.458	3.153	6.499	nan	5.858	6.150	7.113	5.671	5.073	8.148	5.659	8.046	nan	6.734	0.712	0.782	0.637	0.712	0.568	0.482	7.193
15148	chr9	60279582	60282951	+	0	NA	intron (NM_001040426, intron 6 of 17)	intron (NM_001040426, intron 6 of 17)	-140046	NM_172444	207596	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0.415	0.563	0.075	0.573	0.140	0.037	0.482	nan	0.565	0.557	0.385	0.400	0.430	0.437	0.590	0.771	0.224	0.818	1.444	0.832	0.720	3.837	0.654	0.457	0.710
15094	chr9	55131830	55133541	+	0	NA	Intergenic	MIR|SINE|MIR	-16684	NM_180600	109161	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	2.194	0.448	0.312	0.878	1.195	0.361	0.886	2.195	1.017	2.007	1.083	0.881	1.563	2.426	1.486	0.983	1.223	0.783	0.671	0.712	0.358	0.343	0.613	0.330	1.025
12452	chr6	90963725	90968130	+	0	NA	Intergenic	Intergenic	150899	NM_018815	54563	Mm.28162	NM_018815	ENSMUSG00000030091	Nup210	9830001L10|AI836801|Pom210|gp190|gp210	nucleoporin 210	protein-coding	2.457	0.877	0.467	nan	1.035	0.454	4.234	7.475	1.916	1.669	3.043	3.516	3.597	3.924	3.832	4.961	2.232	nan	nan	0.912	0.694	1.382	1.310	0.999	1.848
9034	chr2	167681827	167687795	+	0	NA	Intergenic	Intergenic	-4104	NM_009883	12608	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	4.751	1.844	0.743	7.785	4.785	3.420	3.068	7.287	4.075	6.366	4.337	2.110	4.084	4.770	4.585	4.958	3.310	6.186	nan	1.728	1.675	4.557	1.535	1.498	5.072
1836	chr10	126573227	126576582	+	0	NA	Intergenic	L1MA9|LINE|L1	135487	NR_105841	102465224		NR_105841	ENSMUSG00000098756	Mir378d	Gm27650|mmu-mir-378d	microRNA 378d	ncRNA	8.668	7.035	2.658	4.724	3.551	2.068	6.370	5.376	4.042	5.274	2.808	1.846	8.117	7.552	7.119	7.705	6.780	5.955	1.137	2.362	1.446	0.628	nan	0.747	5.376
13170	chr7	52252330	52255130	+	0	NA	Intergenic	L1_Mur1|LINE|L1	-238014	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	10.250	10.728	3.994	9.447	6.299	4.032	9.130	11.273	6.209	8.151	7.178	4.439	7.849	10.790	9.236	9.122	8.946	8.566	5.584	5.504	4.248	5.645	5.376	3.552	12.398
10472	chr4	120623257	120625231	+	0	NA	Intergenic	Intergenic	35499	NM_001101603	667063	Mm.90231	NM_001101603	ENSMUSG00000091297	Gm8439	EG667063|Gm1664	predicted gene 8439	protein-coding	7.582	9.651	3.450	8.500	3.838	1.764	4.731	6.006	5.887	8.016	5.430	3.857	5.302	7.302	6.049	7.940	4.152	8.144	5.464	3.092	2.235	6.529	3.305	2.408	9.395
9576	chr3	97599489	97602186	+	0	NA	intron (NM_026539, intron 5 of 22)	intron (NM_026539, intron 5 of 22)	9353	NM_026539	68058	Mm.31761	NM_026539	ENSMUSG00000028089	Chd1l	4432404A22Rik|Alc1|Snf2p	chromodomain helicase DNA binding protein 1-like	protein-coding	3.590	1.200	0.288	0.553	0.389		5.736	2.994	0.518	0.466	nan	0.640	3.989	2.152	5.540	nan	1.184	1.469	0.707	0.576	0.093	0.397	0.357	0.115	3.391
10988	chr4	154588782	154598590	+	0	NA	intron (NM_001177995, intron 1 of 15)	intron (NM_001177995, intron 1 of 15)	42681	NR_045643	320939	Mm.436738	NR_045643		5930403L14Rik	-	RIKEN cDNA 5930403L14 gene	ncRNA	9.843	5.548	1.264	9.485	4.895	2.126	9.424	8.995	6.166	12.667	5.195	2.614	7.841	9.882	8.387	10.797	5.052	8.900	3.139	1.918	1.536	4.433	1.581	1.635	15.256
9726	chr3	116214941	116216648	+	0	NA	Intergenic	Intergenic	37690	NM_022427	64378	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	2.796	3.877	1.261	2.995	1.862	0.506	3.322	4.270	1.861	2.891	2.077	1.627	2.573	4.282	2.913	3.465	2.338	3.528	2.119	1.893	0.956	1.934	nan	1.383	3.538
6610	chr17	36105906	36107277	+	0	NA	Intergenic	MMERGLN-int|LTR|ERV1	5085	NM_001271005	667803	Mm.477808	NM_001271005		H2-T-ps	C920025E04Rik|H2-T11	histocompatibility 2, T region locus, pseudogene	protein-coding	6.870	10.253	3.533	8.444	9.645	8.403	9.179	7.914	4.143	7.515	5.287	2.624	7.571	11.134	8.386	9.804	6.318	6.122	4.931	2.832	6.386	4.944	6.331	9.117	12.987
3976	chr13	37222239	37224230	+	0	NA	Intergenic	Lx3_Mus|LINE|L1	-122111	NM_010745	17084	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	3.630	nan	0.461	2.414	2.228	1.405	4.598	4.914	4.033	nan	0.907	1.136	3.629	4.447	5.695	5.974	3.282	4.265	3.863	2.225	0.359	4.380	2.594	1.640	3.415
5160	chr15	50720149	50721525	+	0	NA	intron (NM_001310481, intron 4 of 5)	intron (NM_001310481, intron 4 of 5)	168212	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	6.456	10.307	4.169	8.979	3.799	2.203	3.815	6.061	3.747	5.992	2.831	1.907	2.241	4.080	5.112	3.667	5.125	3.762	4.538	5.574	5.197	4.448	6.332	6.395	6.129
6731	chr17	50646231	50657752	+	0	NA	intron (NM_013880, intron 4 of 5)	intron (NM_013880, intron 4 of 5)	-46690	NM_001297747	12228	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	1.454	5.448	2.722	1.627	0.659	0.471	0.605	0.582	0.892	1.409	0.855	0.544	0.517	nan	0.772	1.019	nan	1.165	7.546	3.708	2.914	7.344	4.051	3.921	1.249
8138	chr2	32388713	32395672	+	0	NA	Intergenic	Intergenic	-3698	NM_133783	96979	Mm.28048	NM_133783	ENSMUSG00000026820	Ptges2	0610038H10Rik|C79137|Gbf1|Mpges2|Pges2	prostaglandin E synthase 2	protein-coding	6.767	10.178	3.000	6.994	3.023	1.606	7.495	9.942	nan	7.392	6.776	4.307	7.450	7.702	7.973	10.838	7.286	7.315	2.519	1.903	1.516	3.265	1.647	1.792	11.869
2929	chr11	108108901	108112497	+	0	NA	intron (NM_011101, intron 3 of 16)	L1Md_T|LINE|L1	113851	NR_106082	102465705		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	1.756	7.962	3.548	nan	1.125	0.432	0.992	1.807	nan	nan	0.537	0.498	1.329	nan	1.716	1.853	1.096	1.687	0.818	1.222	0.560	nan	1.539	0.649	1.511
13311	chr7	79448793	79455749	+	0	NA	intron (NM_017462, intron 18 of 22)	intron (NM_017462, intron 18 of 22)	14002	NM_017462	18975	Mm.3616	NM_017462	ENSMUSG00000039176	Polg	AA409516|PolgA	polymerase (DNA directed), gamma	protein-coding	1.312	3.875	1.453	nan	0.604	0.261	1.110	3.334	1.521	1.677	3.118	2.012	0.825	2.020	1.530	nan	0.392	1.598	5.669	2.377	1.583	5.305	3.786	2.262	nan
13089	chr7	30690622	30694093	+	0	NA	Intergenic	RLTR4_MM-int|LTR|ERV1	-6569	NM_026961	69147	Mm.307035	NM_026961	ENSMUSG00000013083	2200002J24Rik	-	RIKEN cDNA 2200002J24 gene	protein-coding	7.602	5.971	3.198	6.002	3.656	2.099	5.645	7.258	5.285	5.535	3.812	2.542	5.408	5.595	7.656	7.909	7.137	7.837	3.690	3.684	2.626	4.424	4.136	3.490	6.522
5681	chr15	100582366	100588654	+	0	NA	intron (NM_001304965, intron 6 of 10)	intron (NM_001304965, intron 6 of 10)	855	NM_010127	19009	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	7.226	2.862	1.960	1.562	3.008	2.087	9.913	9.999	4.107	6.516	1.403	1.271	9.846	5.542	5.086	4.993	7.420	3.900	1.439	2.346	2.384	1.520	1.800	1.419	4.252
7071	chr18	23668607	23674303	+	0	NA	Intergenic	Intergenic	80850	NR_126066	100502834	Mm.213614	NR_126066	ENSMUSG00000086287	Gm15972	OTTMUSG00000028454	predicted gene 15972	ncRNA	0.860	0.413	0.486	1.283	0.632	0.284	0.528	1.397	0.857	1.033	0.410	0.499	0.927	1.227	0.574	nan	0.565	1.526	nan	2.020	1.454	7.960	1.515	0.759	0.864
2738	chr11	98062759	98065822	+	0	NA	Intergenic	Intergenic	-10828	NM_146028	217154	Mm.181008	NM_146028	ENSMUSG00000017400	Stac2	24b2|24b2/STAC2|AW240854	SH3 and cysteine rich domain 2	protein-coding	11.855	13.829	6.000	13.117	9.912	6.699	10.048	9.929	7.495	12.510	9.345	5.400	8.858	12.351	10.691	11.787	9.731	10.429	4.507	4.133	5.668	4.971	nan	5.216	13.531
7447	chr18	85072314	85073672	+	0	NA	Intergenic	URR1A|DNA|hAT-Charlie	-121469	NM_025969	67105	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	tranlocase of inner mitochondrial membrane 21	protein-coding	6.470	0.612	0.696	2.042	2.622	0.892	4.116	8.256	3.797	3.444	3.052	4.137	7.296	5.255	2.618	3.812	5.093	3.085	0.600	0.355	0.327	0.510	0.665	0.376	nan
5629	chr15	98858638	98864569	+	0	NA	exon (NM_001033276, exon 12 of 55)	exon (NM_001033276, exon 12 of 55)	9602	NM_001033276	381022	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	10.364	7.953	2.926	6.725	5.449	3.467	10.004	15.204	4.999	6.170	9.801	4.004	9.826	11.300	9.804	nan	9.331	7.706	4.137	2.499	2.693	3.996	3.777	3.108	11.338
5179	chr15	54969956	54974664	+	0	NA	Intergenic	Intergenic	-52164	NM_001285994	18606	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	5.828	0.967	0.321	4.664	2.656	1.833	5.291	9.470	5.400	nan	1.960	3.551	9.484	8.606	6.826	6.514	5.689	6.651	4.480	2.097	2.006	3.898	2.803	1.752	4.602
12233	chr6	51493746	51496735	+	0	NA	Intergenic	Intergenic	24624	NM_007624	12417	Mm.280968	NM_007624	ENSMUSG00000029836	Cbx3	HP1g|M32	chromobox 3	protein-coding	10.233	6.252	3.838	5.941	6.129	3.497	8.819	10.851	5.557	5.740	5.974	3.389	5.590	9.056	6.487	8.195	7.146	5.660	nan	4.910	2.419	2.753	2.240	1.854	6.642
8399	chr2	83582288	83585573	+	0	NA	Intergenic	IAPEz-int|LTR|ERVK	-60648	NM_026934	69082	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	4.660	2.281	1.266	2.328	1.926	1.368	5.562	4.922	2.838	2.994	2.739	1.889	4.409	3.571	3.522	4.256	4.368	3.806	1.402	1.044	0.884	1.201	1.421	1.139	4.175
5447	chr15	80084142	80089116	+	0	NA	Intergenic	RMER15|LTR|ERVL	-3223	NM_013762	27367	Mm.290771	NM_013762	ENSMUSG00000060036	Rpl3	F2|J1	ribosomal protein L3	protein-coding	9.253	12.874	3.373	nan	4.291	2.694	9.024	12.482	5.417	8.443	6.472	3.591	9.408	9.904	11.151	10.270	6.642	8.925	7.880	3.752	2.798	10.574	5.572	3.945	12.988
3087	chr11	119686756	119688324	+	0	NA	intron (NM_028898, intron 3 of 33)	MTE-int|LTR|ERVL-MaLR	84635	NM_028898	74370	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	3.079	nan	0.243	2.359	2.551	1.256	2.119	nan	2.656	3.242	1.315	2.771	2.265	4.639	2.447	2.556	0.827	2.666	2.872	nan	0.635	3.391	1.410	0.889	4.282
14776	chr8	127204018	127208096	+	0	NA	intron (NM_001309391, intron 2 of 24)	intron (NM_001309391, intron 2 of 24)	-93555	NM_001013581	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	2.369	nan	0.236	nan	2.313	1.140	nan	nan	1.298	2.045	0.264	0.196	4.339	5.581	4.540	5.256	2.715	nan	nan	0.381	0.240	nan	0.521	nan	9.773
15635	chr9	123146548	123150109	+	0	NA	Intergenic	Intergenic	-2618	NM_011606	21922	Mm.34588	NM_011606	ENSMUSG00000025784	Clec3b	Tna	C-type lectin domain family 3, member b	protein-coding	7.908	4.561	2.317	5.059	nan	1.503	nan	4.998	4.204	4.715	7.618	4.192	3.251	4.395	nan	nan	3.879	5.277	4.483	2.949	2.499	4.580	3.577	3.101	6.843
15609	chr9	121263976	121265398	+	0	NA	intron (NM_177589, intron 4 of 36)	intron (NM_177589, intron 4 of 36)	12485	NM_177589	209012	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	2.881	1.846	0.666	4.293	0.646	0.306	3.277	2.712	1.729	2.288	1.934	0.572	3.786	4.676	4.186	5.149	2.105	3.860	1.450	0.869	0.516	2.262	nan	0.906	7.100
8786	chr2	148663400	148665806	+	0	NA	Intergenic	MERVK26-int|LTR|ERVK	-8012	NM_019761	56488	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	4.970	0.589	0.265	2.271	2.109	1.347	5.674	2.371	3.307	5.070	0.484	0.418	5.197	5.240	5.212	6.295	6.879	3.927	nan	0.295	0.162	0.220	0.265	0.294	4.664
442	chr1	92817296	92826828	+	0	NA	Intergenic	B3|SINE|B2	-9624	NM_016696	14733	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	10.071	0.524	0.340	3.581	5.774	3.789	10.283	7.009	4.377	5.096	5.082	3.781	8.079	7.398	6.944	10.135	7.134	7.478	2.080	1.761	1.389	nan	2.191	1.896	7.500
6208	chr16	92266584	92270478	+	0	NA	Intergenic	MER2|DNA|TcMar-Tigger	-23858	NM_134110	246133	Mm.156736	NM_134110	ENSMUSG00000039672	Kcne2	2200002I16Rik|AW048273|MiRP1	potassium voltage-gated channel, Isk-related subfamily, gene 2	protein-coding	8.653	nan	0.314	5.604	5.365	2.792	7.428	8.776	7.997	9.455	3.837	3.179	9.771	10.175	8.570	11.052	6.675	8.908	0.529	0.536	0.315	nan	0.271	0.124	9.297
4044	chr13	43654096	43657178	+	0	NA	intron (NM_183204, intron 1 of 1)	ORR1D1|LTR|ERVL-MaLR	39840	NM_183204	328234	Mm.40588	NM_183204	ENSMUSG00000044164	Rnf182	C630023L15Rik	ring finger protein 182	protein-coding	8.965	7.959	3.726	8.379	7.392	4.389	6.128	6.984	6.975	10.420	4.885	3.461	7.036	9.112	7.862	8.400	6.284	8.804	4.585	nan	3.463	3.823	3.992	3.555	10.393
5524	chr15	85219474	85222464	+	0	NA	intron (NM_001347088, intron 1 of 14)	B3A|SINE|B2	14961	NM_010180	14114	Mm.297992	NM_010180	ENSMUSG00000006369	Fbln1	-	fibulin 1	protein-coding	3.477	0.976	0.389	nan	2.565	1.280	3.905	7.619	nan	3.108	2.267	3.517	4.459	4.388	4.742	4.873	nan	4.143	nan	0.428	0.735	nan	0.319	0.435	nan
14543	chr8	108317060	108322100	+	0	NA	Intergenic	ORR1A4|LTR|ERVL-MaLR	265097	NR_077224	109215	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	3.990	2.121	1.092	3.424	4.140	2.653	2.393	4.895	3.632	3.351	2.859	1.672	3.637	5.193	3.306	4.255	3.463	5.947	0.707	1.135	1.292	nan	1.221	1.176	4.861
14567	chr8	109095354	109099061	+	0	NA	intron (NR_126329, intron 2 of 9)	B1F|SINE|Alu	21985	NR_126329	628686	Mm.203332	NR_126329	ENSMUSG00000097393	D030068K23Rik	-	RIKEN cDNA D030068K23 gene	ncRNA	2.907	0.701	0.498	1.506	3.011	2.824	3.652	6.500	2.998	1.696	2.198	2.939	4.464	3.411	3.783	3.596	4.469	3.536	2.140	2.808	4.265	nan	4.401	5.826	2.630
6771	chr17	63229103	63233567	+	0	NA	intron (NM_015794, intron 6 of 8)	intron (NM_015794, intron 6 of 8)	81638	NR_130176	414079	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	2.612	2.632	1.103	2.624	0.509	0.499	3.256	2.530	nan	3.015	5.787	5.560	1.261	2.464	3.903	0.873	1.695	1.742	5.028	1.527	2.276	5.897	3.483	5.278	3.458
6893	chr17	82066379	82070270	+	0	NA	Intergenic	Intergenic	-329937	NM_011406	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	3.608	1.784	0.918	2.441	1.367	0.540	nan	nan	nan	2.271	0.765	0.628	2.022	1.899	2.573	nan	3.182	2.434	6.914	4.429	3.802	5.581	7.656	6.100	3.499
12083	chr6	22293548	22295002	+	0	NA	intron (NM_053116, intron 3 of 3)	intron (NM_053116, intron 3 of 3)	6048	NM_053116	93735	Mm.137403	NM_053116	ENSMUSG00000029671	Wnt16	E130309I19Rik	wingless-type MMTV integration site family, member 16	protein-coding	2.885	nan	0.587	1.929	1.275	0.277	6.966	6.778	2.201	1.699	0.471	1.510	6.612	5.074	5.566	7.766	4.987	4.201	1.482	1.077	0.470	1.436	1.372	1.108	2.705
11672	chr5	122717447	122720072	+	0	NA	intron (NM_001310718, intron 4 of 10)	tRNA-Ala-GCY_|tRNA|tRNA	11215	NM_001310718	18438	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	3.845	2.833	3.103	2.809	5.563	4.526	3.160	6.294	3.565	3.357	6.580	4.251	3.532	5.171	2.937	3.297	3.704	2.361	nan	nan	2.428	1.327	nan	1.219	2.083
7375	chr18	73910646	73914640	+	0	NA	Intergenic	ORR1D2|LTR|ERVL-MaLR	53258	NM_001305882	71263	Mm.126220	NM_027741	ENSMUSG00000064036	Mro	4930507C04Rik|4933435E20Rik	maestro	protein-coding	6.548	3.836	1.347	8.126	5.291	4.266	3.128	5.591	4.959	7.998	7.511	3.878	5.998	5.794	4.419	3.975	2.860	4.789	3.752	nan	2.262	3.545	3.240	2.872	5.014
15420	chr9	99624007	99629467	+	0	NA	Intergenic	Intergenic	-2794	NM_028258	72507	Mm.221455	NM_028258	ENSMUSG00000037784	Dzip1l	2610524A10Rik|AI663976	DAZ interacting protein 1-like	protein-coding	5.244	0.408	0.180	2.295	2.459	1.336	4.214	2.668	5.009	5.216	0.637	1.848	4.710	5.804	4.096	5.143	4.954	5.859	0.601	0.911	0.530	0.433	0.718	0.755	5.796
5440	chr15	79854522	79857350	+	0	NA	Intergenic	B1_Mur3|SINE|Alu	-21603	NM_001013362	504193	Mm.38438	NM_029079	ENSMUSG00000089837	Npcd	Cbx6-Nptxr	neuronal pentraxin chromo domain	protein-coding	4.039	5.529	0.928	4.622	2.847	1.026	4.076	4.497	2.235	nan	nan	0.718	3.185	4.904	3.941	3.189	nan	4.847	0.868	0.647	0.236	nan	0.529	0.314	4.767
12017	chr5	152134218	152136614	+	0	NA	Intergenic	Intergenic	-484208	NM_027009	69263	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	1.923	0.789	0.707	nan	1.845	0.723	2.043	2.362	2.001	2.187	6.436	3.445	2.622	2.209	2.098	1.813	1.673	2.755	0.905	0.827	0.242	0.716	0.682	0.500	nan
4186	chr13	59552307	59556433	+	0	NA	intron (NM_001048008, intron 1 of 17)	intron (NM_001048008, intron 1 of 17)	2552	NM_001284219	67269	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	5.045	1.465	0.609	3.041	1.566	0.535	9.023	6.106	3.945	4.361	2.690	2.569	7.047	7.190	5.711	6.565	3.273	5.771	2.334	0.993	0.948	2.658	1.148	0.627	7.316
14269	chr8	70474031	70475017	+	0	NA	intron (NM_178771, intron 1 of 2)	intron (NM_178771, intron 1 of 2)	2419	NM_001122830	234378	Mm.187090	NM_172052	ENSMUSG00000055707	Klhl26	C630013N10Rik|Klkl26	kelch-like 26	protein-coding	4.309	2.836	1.437	4.184	1.566	1.028	1.235	3.012	2.763	2.828	1.709	1.680	2.374	3.308	3.261	4.054	2.145	4.888	nan	0.978	0.480	2.589	0.893	0.499	4.027
14415	chr8	87548630	87551665	+	0	NA	Intergenic	Intergenic	-13760	NM_177901	330820	Mm.212913	NM_177901	ENSMUSG00000069971	4933402J07Rik	-	RIKEN cDNA 4933402J07 gene	protein-coding	9.747	13.521	3.578	11.532	5.366	4.121	6.917	10.003	5.932	10.297	6.469	3.794	9.246	9.913	11.242	13.806	6.805	9.730	nan	2.887	3.899	8.767	2.839	3.086	15.581
8227	chr2	46297310	46300175	+	0	NA	Intergenic	Intergenic	602137	NR_040497	69405	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	5.344	3.178	3.198	3.027	2.103	1.614	3.376	4.522	3.858	2.884	8.280	2.470	1.695	3.886	2.612	2.589	2.604	3.409	1.093	1.288	1.073	1.233	0.798	0.582	2.350
5642	chr15	99370775	99378192	+	0	NA	Intergenic	Intergenic	-4001	NM_001310622	22379	Mm.29043	NM_011711	ENSMUSG00000023008	Fmnl3	2700073B04Rik|FBP11|Wbp3|mKIAA2014	formin-like 3	protein-coding	1.543	0.748	0.396	2.037	2.273	1.488	1.745	7.903	2.821	2.618	3.592	4.065	2.417	3.268	2.382	2.393	1.643	2.441	0.846	0.561	0.628	0.970	0.491	0.450	2.215
10995	chr4	155204763	155206471	+	0	NA	intron (NM_011385, intron 1 of 6)	intron (NM_011385, intron 1 of 6)	16918	NM_011385	20481	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	5.453	10.983	2.589	6.638	2.215	0.939	4.884	4.472	2.624	4.971	4.180	2.844	4.668	6.616	6.685	6.738	2.938	6.094	2.894	1.311	0.789	3.180	1.918	1.176	12.017
8408	chr2	84457836	84481615	+	0	NA	intron (NM_001177320, intron 2 of 7)	intron (NM_001177320, intron 2 of 7)	4449	NM_011576	21788	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	9.075	1.165	0.792	5.680	4.291	2.217	7.267	7.801	5.456	5.467	6.791	3.335	8.368	8.674	6.638	8.573	7.606	7.907	1.267	1.556	0.889	1.207	1.110	0.742	7.302
3243	chr12	25917022	25918505	+	0	NA	Intergenic	Lx8|LINE|L1	292742	NR_131149	629481	Mm.390460	NR_131149		Gm29687	-	predicted gene, 29687	ncRNA	9.656	2.252	1.376	3.676	1.988	1.527	9.076	7.109	5.174	4.898	2.335	1.446	4.955	5.967	8.751	9.378	7.073	5.912	3.185	3.005	1.939	6.410	2.495	1.409	15.791
7702	chr19	32316029	32317318	+	0	NA	intron (NM_144792, intron 2 of 9)	intron (NM_144792, intron 2 of 9)	32643	NM_001168525	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	3.152	1.748	0.868	2.565	2.764	0.395	5.752	7.905	4.968	3.805	nan	0.621	4.230	3.853	5.268	5.615	4.198	5.445	nan	1.715	0.744	4.206	1.892	0.443	5.397
9893	chr3	159502193	159506254	+	0	NA	intron (NM_029523, intron 2 of 11)	Lx2|LINE|L1	8790	NM_001172093	76131	Mm.371655	NM_029523	ENSMUSG00000028175	Depdc1a	5830484J08Rik|Depdc1	DEP domain containing 1a	protein-coding	9.682	3.143	1.037	7.794	6.866	3.964	10.031	7.483	6.975	8.941	8.816	4.847	10.818	13.048	9.411	9.477	8.333	10.991	3.138	2.371	1.357	2.497	3.633	2.626	11.732
7633	chr19	21725714	21729916	+	0	NA	Intergenic	RMER5|LTR|ERV1	-50525	NM_001033759	83921	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	8.874	9.186	3.460	8.848	4.045	2.798	7.634	9.762	7.258	12.670	5.478	3.084	7.357	9.267	9.565	10.399	10.218	11.056	2.793	1.983	2.279	5.094	3.317	3.779	12.640
7102	chr18	32580264	32585040	+	0	NA	Intergenic	L1Md_T|LINE|L1	-22618	NM_001048207	71683	Mm.292145	NM_027863	ENSMUSG00000090523	Gypc	0610037F22Rik|Cd236r	glycophorin C	protein-coding	2.402	1.309	0.867	0.374	0.179	0.155	4.348	7.771	0.618	0.625	0.627	0.627	2.393	2.711	2.462	4.171	2.228	1.840	nan	0.413	0.431	nan	0.391	0.344	3.338
7780	chr19	42131330	42133930	+	0	NA	Intergenic	Intergenic	-3637	NM_027106	69534	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	nan	0.813	0.422	1.466	4.945	2.488	1.018	nan	2.349	4.910	5.448	3.024	1.175	4.180	1.287	2.318	nan	1.309	0.181	0.911	0.341	0.375	0.477	0.326	2.250
15287	chr9	71804434	71806366	+	0	NA	Intergenic	Intergenic	-33798	NM_001304362	68178	Mm.99961	NM_026599	ENSMUSG00000032232	Cgnl1	4933421H10Rik|9930020M10Rik|AI503810|Jacop	cingulin-like 1	protein-coding	4.155	1.105	1.118	2.521	3.448	1.864	1.619	2.245	3.520	4.128	1.432	1.343	2.196	3.627	2.563	3.579	2.302	3.663	nan	1.458	1.241	0.878	1.247	0.686	2.405
12583	chr6	113052501	113053915	+	0	NA	intron (NM_008188, intron 3 of 9)	intron (NM_008188, intron 3 of 9)	6881	NM_008188	14911	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	3.228	2.308	3.024	1.716	4.220	2.777	3.046	5.234	1.971	1.966	1.895	1.238	2.686	4.315	2.419	2.651	4.233	2.458	1.491	1.761	0.749	0.850	1.733	1.061	1.254
14273	chr8	70914788	70917216	+	0	NA	intron (NM_173013, intron 5 of 6)	intron (NM_173013, intron 5 of 6)	-9523	NR_035495	100316777		NR_035495	ENSMUSG00000088248	Mir1969	mir-1969|mmu-mir-1969	microRNA 1969	ncRNA	5.120	0.596	0.253	4.143	2.043	0.767	1.166	3.156	2.114	1.774	1.626	0.662	1.217	1.832	3.252	4.174	2.617	4.064	nan	1.878	0.743	2.827	0.779	0.310	3.432
13836	chr7	140241909	140245259	+	0	NA	Intergenic	Lx3_Mus|LINE|L1	-3717	NM_175533	244234	Mm.85125	NM_175533	ENSMUSG00000054672	5830411N06Rik	Scart2	RIKEN cDNA 5830411N06 gene	protein-coding	5.078	nan	0.508	3.821	2.564	0.901	4.952	7.956	3.439	2.796	1.890	1.457	3.810	5.328	5.280	4.626	3.456	4.872	1.117	0.776	0.549	0.923	0.680	0.507	5.395
6184	chr16	90196369	90200209	+	0	NA	Intergenic	Intergenic	-22453	NM_011434	20655	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	6.286	nan	1.496	1.835	1.995	1.249	5.393	6.830	1.832	2.341	1.286	1.497	5.463	5.145	4.035	6.932	4.175	3.679	0.844	0.515	0.670	nan	0.546	0.569	6.058
15784	chrX	98624558	98626126	+	0	NA	intron (NM_001313755, intron 18 of 23)	intron (NM_001313755, intron 18 of 23)	265683	NM_052976	94190	Mm.33536	NM_052976	ENSMUSG00000031214	Ophn1	C130037N19Rik|Wtgr	oligophrenin 1	protein-coding	7.847	7.888	3.455	4.067	5.032	2.997	5.811	5.675	4.066	6.344	6.024	3.923	3.921	7.838	5.064	6.128	4.164	5.273	4.345	4.767	2.658	4.067	6.664	4.123	6.961
249	chr1	64240915	64242403	+	0	NA	Intergenic	MLTR14|LTR|ERV1	-120270	NM_033563	93691	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	3.080	0.978	0.364	2.063	2.240	1.576	1.746	1.332	1.801	1.569	1.386	0.693	2.176	3.326	2.755	3.525	2.547	2.732	1.410	0.990	0.798	1.975	0.596	0.425	1.849
10724	chr4	135838496	135844036	+	0	NA	Intergenic	(TTTC)n|Simple_repeat|Simple_repeat	-14805	NM_001284196	14105	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	6.080	4.301	1.750	5.885	3.751	2.063	4.699	4.969	3.836	4.311	4.944	3.395	4.085	6.455	6.541	7.132	3.782	5.601	5.936	3.045	1.753	6.763	nan	4.122	5.214
8460	chr2	92875487	92876572	+	0	NA	Intergenic	Intergenic	-39072	NM_030725	80976	Mm.33490	NM_030725	ENSMUSG00000027220	Syt13	5730409J20Rik|AI549909|mKIAA1427	synaptotagmin XIII	protein-coding	1.631	1.002	0.432	2.300	0.636	0.166	1.375	3.298	1.326	2.379	7.031	1.854	2.256	3.427	2.537	6.129	1.114	3.043	1.203	0.486	0.499	2.218	0.522	0.388	6.851
1612	chr10	93558622	93560942	+	0	NA	intron (NM_175488, intron 5 of 15)	RMER1B|Other|Other	19150	NM_175488	237465	Mm.477086	NM_175488	ENSMUSG00000036168	Ccdc38	4933417K05Rik	coiled-coil domain containing 38	protein-coding	4.874	1.484	0.561	4.055	2.431	0.775	2.258	3.528	3.543	4.096	nan	0.939	3.864	6.283	3.394	5.958	4.783	4.862	nan	0.857	0.264	nan	0.487	0.286	5.662
8096	chr2	30729881	30733323	+	0	NA	Intergenic	RLTR11B|LTR|ERVK	10392	NR_037272	100526499		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0.489	1.005	0.563	0.464	0.359	0.107	0.578	0.684	nan	0.617	0.627	0.319	0.369	0.493	0.946	0.818	0.822	0.516	2.396	1.984	1.599	4.250	0.820	0.982	0.923
1748	chr10	115657237	115658313	+	0	NA	Intergenic	L1MA9|LINE|L1	-69995	NM_010195	14160	Mm.42103	NM_010195	ENSMUSG00000020140	Lgr5	FEX|Gpr49	leucine rich repeat containing G protein coupled receptor 5	protein-coding	3.854	0.687	0.612	2.928	1.039	0.441	3.045	3.246	2.051	1.846	0.872	0.976	1.938	3.443	2.079	2.394	1.645	2.565	0.615	0.454	0.614	0.277	0.454	0.459	1.933
9484	chr3	89881781	89895206	+	0	NA	intron (NM_001310676, intron 3 of 9)	intron (NM_001310676, intron 3 of 9)	24703	NM_001310676	16194	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	10.688	6.505	2.988	6.981	5.838	3.571	12.881	8.173	6.847	8.566	4.802	3.016	12.617	13.121	9.172	9.943	9.685	10.083	nan	2.265	1.715	2.569	1.846	1.876	12.348
858	chr1	170355071	170365072	+	0	NA	intron (NM_027528, intron 4 of 7)	intron (NM_027528, intron 4 of 7)	51210	NM_001039593	76925	Mm.33631	NM_001039593	ENSMUSG00000042800	1700015E13Rik	-	RIKEN cDNA 1700015E13 gene	protein-coding	6.346	0.981	0.471	nan	2.476	1.453	2.036	1.166	nan	4.784	7.765	5.543	nan	3.180	nan	3.379	1.586	5.322	4.574	3.383	2.165	nan	nan	4.444	nan
2127	chr11	48601249	48602646	+	0	NA	Intergenic	Intergenic	-198413	NM_008143	14694	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	5.135	6.389	9.932	3.453	5.745	4.276	3.179	3.864	3.639	3.853	1.907	1.407	2.137	4.159	2.736	3.134	3.901	2.667	nan	4.781	4.636	nan	5.261	6.115	2.749
8574	chr2	119302526	119304607	+	0	NA	Intergenic	Intergenic	14824	NM_172269	228545	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	13.107	19.099	6.934	16.377	7.512	4.034	12.463	15.413	6.890	19.854	10.266	6.122	13.031	14.331	12.194	16.303	12.154	12.486	7.149	3.450	5.184	8.804	3.752	6.512	22.807
9655	chr3	105533486	105539933	+	0	NA	intron (NM_001039347, intron 2 of 6)	B1_Mus1|SINE|Alu	77893	NM_019931	56543	Mm.44530	NM_019931	ENSMUSG00000040896	Kcnd3	AW045978|Kncd3|Kv4.3	potassium voltage-gated channel, Shal-related family, member 3	protein-coding	3.241	0.787	0.427	1.981	1.810	1.507	4.029	1.539	2.703	2.561	1.262	1.383	5.022	4.403	2.926	3.246	3.300	3.773	0.980	0.734	0.672	1.236	0.669	0.546	2.718
8643	chr2	127546298	127550553	+	0	NA	Intergenic	Lx3_Mus|LINE|L1	-7008	NM_138750	192212	Mm.34171	NM_138750	ENSMUSG00000027376	Prom2	AI507243|Prom-rp	prominin 2	protein-coding	3.062	1.074	0.518	1.864	1.426	0.697	3.854	5.492	2.303	3.080	3.892	2.379	4.150	3.681	3.204	nan	4.057	3.294	nan	0.572	0.644	0.868	0.772	0.493	5.121
10563	chr4	129233018	129235328	+	0	NA	intron (NM_001285867, intron 1 of 6)	B2_Mm2|SINE|B2	5045	NM_001285865	97130	Mm.331907	NM_001033189	ENSMUSG00000050390	C77080	Kiaa1522|mKIAA1522	expressed sequence C77080	protein-coding	6.323	7.270	3.702	5.804	5.070	3.450	7.004	6.632	3.667	4.359	2.763	2.272	3.967	6.049	nan	6.900	6.246	4.233	5.913	6.953	5.711	7.034	6.390	6.134	8.033
5131	chr15	37988216	37994560	+	0	NA	intron (NM_001112721, intron 41 of 58)	intron (NM_001112721, intron 41 of 58)	-30333	NM_199476	382985	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	3.974	1.286	0.718	2.106	1.942	0.830	3.861	4.983	2.761	2.739	1.203	1.377	5.485	4.572	3.035	3.679	4.580	3.559	1.542	1.718	0.870	nan	1.044	0.796	nan
11679	chr5	122974024	122980723	+	0	NA	intron (NM_001003953, intron 4 of 22)	L1ME3B|LINE|L1	11726	NM_001003953	30841	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	5.417	0.808	0.414	5.574	3.424	2.036	9.834	9.443	6.622	6.889	10.702	6.595	9.697	12.542	10.920	9.981	5.852	7.210	nan	nan	1.408	3.864	nan	1.293	6.850
1479	chr10	79458350	79460130	+	0	NA	Intergenic	L1VL4|LINE|L1	-9718	NM_001104537	625029	Mm.469865	NM_001104537	ENSMUSG00000091381	Vmn2r83	EG625029	vomeronasal 2, receptor 83	protein-coding	7.239	8.678	3.200	6.263	3.944	2.709	3.884	4.668	4.482	4.702	3.988	3.667	3.238	7.478	4.923	5.407	4.045	4.538	4.645	3.678	3.049	5.838	3.705	2.367	8.361
1359	chr10	62639482	62640499	+	0	NA	exon (NM_053183, exon 7 of 15)	exon (NM_053183, exon 7 of 15)	11208	NM_053183	94213	Mm.114116	NM_053183	ENSMUSG00000020076	Ddx50	4933429B04Rik|8430408E17Rik|GU2|RH-II	DEAD (Asp-Glu-Ala-Asp) box polypeptide 50	protein-coding	6.876	7.699	5.492	4.549	4.019	1.433	2.325	2.808	2.739	3.118	2.295	1.890	2.463	3.434	2.488	2.938	3.681	3.296	nan	2.714	1.434	1.013	2.390	1.283	4.108
13324	chr7	80934489	80939584	+	0	NA	intron (NM_019951, intron 1 of 5)	intron (NM_019951, intron 1 of 5)	10514	NM_019951	56529	Mm.43760	NM_019951	ENSMUSG00000025724	Sec11a	1810012E07Rik|18kDa|Sec11l1|Sid2895p|Spc18|sid2895	SEC11 homolog A, signal peptidase complex subunit	protein-coding	4.243	0.574	0.332	3.199	2.520	1.300	2.168	2.570	4.775	6.229	0.511	1.129	4.994	5.096	3.929	3.964	2.702	6.435	0.754	0.672	0.610	0.816	0.622	0.619	nan
9948	chr4	13669225	13681882	+	0	NA	Intergenic	RLTRETN_Mm|LTR|ERVK	-67749	NM_001111026	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding	0.801	1.043	0.578	1.521	0.306	0.176	0.374	0.424	0.558	0.622	0.396	0.343	0.264	0.343	0.416	0.688	0.413	0.933	9.711	4.135	2.660	6.354	5.694	4.478	0.683
8966	chr2	164383738	164390018	+	0	NA	Intergenic	Intergenic	-16316	NM_009036	19668	Mm.473794	NM_009036	ENSMUSG00000017007	Rbpjl	RBP-L|Rbpsuhl	recombination signal binding protein for immunoglobulin kappa J region-like	protein-coding	4.885	0.417	0.270	4.745	5.642	3.304	7.655	8.203	3.709	4.668	3.132	2.675	6.443	7.647	6.530	8.051	5.612	nan	nan	1.651	1.207	2.923	2.189	1.864	10.958
8142	chr2	32508876	32512503	+	0	NA	Intergenic	(CATATA)n|Simple_repeat|Simple_repeat	-24670	NM_153560	98952	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	3.466	3.552	1.204	6.095	2.585	2.302	2.387	2.404	nan	3.486	1.465	1.141	1.309	2.771	2.286	3.421	1.820	3.183	1.061	0.934	0.917	0.888	0.485	0.561	3.787
7436	chr18	82990275	82991817	+	0	NA	intron (NM_183033, intron 3 of 5)	intron (NM_183033, intron 3 of 5)	-70486	NR_033307	75853	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	2.900	nan	0.845	1.973	1.526	0.522	2.280	2.914	1.591	2.517	3.615	2.827	2.314	3.787	2.532	2.989	2.691	2.224	2.404	nan	0.695	2.205	1.315	1.208	2.597
5344	chr15	75838648	75840681	+	0	NA	exon (NM_172121, exon 2 of 12)	exon (NM_172121, exon 2 of 12)	2244	NM_172121	223642	Mm.209800	NM_172121	ENSMUSG00000075600	Zc3h3	BC049953|Kiaa0150|Smicl|Zc3hdc3	zinc finger CCCH type containing 3	protein-coding	9.364	5.117	1.886	7.186	4.634	3.966	12.330	16.528	3.959	10.028	10.809	3.276	9.500	11.040	8.897	9.652	8.116	7.382	4.074	2.027	3.467	4.388	3.475	4.273	15.736
14517	chr8	107114681	107117917	+	0	NA	Intergenic	Intergenic	-19754	NR_104410	21750	Mm.6402	NM_009353	ENSMUSG00000031921	Terf2	TRF2	telomeric repeat binding factor 2	protein-coding	3.465	3.444	1.385	2.888	1.720	0.602	2.663	4.687	1.857	2.828	2.311	1.519	3.630	3.664	3.798	5.672	3.237	3.851	1.775	2.763	1.762	nan	2.043	1.295	3.895
8289	chr2	60706705	60711213	+	0	NA	intron (NM_001159564, intron 1 of 17)	LTR10_RN|LTR|ERVK	13644	NM_001159564	16420	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	6.829	2.925	2.183	4.113	4.792	2.032	4.072	5.454	3.413	3.965	4.260	2.585	3.019	6.177	3.602	4.410	4.894	4.921	1.362	1.744	0.998	0.978	1.254	0.923	5.140
971	chr1	184120529	184122427	+	0	NA	Intergenic	Intergenic	87017	NM_022019	63953	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	8.176	0.684	1.076	3.033	3.346	3.135	7.378	6.079	2.526	3.747	2.463	3.019	6.329	5.108	4.220	nan	6.479	4.356	1.397	2.533	2.476	4.041	2.499	2.202	4.845
5605	chr15	97190916	97192401	+	0	NA	Intergenic	Intergenic	-55449	NM_172293	239647	Mm.130036	NM_172293	ENSMUSG00000044250	Pced1b	Fam113b	PC-esterase domain containing 1B	protein-coding	4.125	18.889	5.308	3.433	0.955	0.213	1.343	2.215	1.508	2.220	1.590	0.989	2.025	2.333	2.463	2.568	1.959	2.593	0.781	1.462	0.330	1.041	0.331	0.173	3.564
6818	chr17	71093369	71107095	+	0	NA	intron (NM_010867, intron 23 of 37)	intron (NM_010867, intron 23 of 37)	80675	NM_001083934	17929	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	4.898	1.635	1.048	4.413	5.406	3.224	6.457	6.708	nan	4.602	6.010	6.720	4.589	nan	6.163	6.087	4.330	5.061	3.578	2.258	1.660	4.048	3.519	2.905	5.771
15447	chr9	102978253	102982106	+	0	NA	Intergenic	RLTR26_Mus|LTR|ERVK	-28310	NM_033314	24059	Mm.207106	NM_033314	ENSMUSG00000032548	Slco2a1	2310021C19Rik|Pgt|Slc21a2|mPgt	solute carrier organic anion transporter family, member 2a1	protein-coding	3.982	1.221	0.574	7.233	1.726	1.091	3.541	1.719	3.054	3.479	3.158	1.279	3.514	4.890	4.136	5.190	1.870	5.475	0.579	0.426	0.485	1.006	0.378	0.322	8.058
847	chr1	167927564	167929333	+	0	NA	Intergenic	Intergenic	238890	NM_033652	110648	Mm.330081	NM_033652	ENSMUSG00000026686	Lmx1a	Lmx1.1|dr|dreher|sst	LIM homeobox transcription factor 1 alpha	protein-coding	1.843	4.643	2.528	3.625	1.175	0.361	0.660	1.672	nan	1.792	1.901	1.596	2.509	1.594	nan	2.006	1.482	3.089	1.058	0.792	0.416	nan	nan	0.162	1.040
479	chr1	99555897	99559431	+	0	NA	Intergenic	ETnERV3-int|LTR|ERVK	-215101	NM_172851	241175	Mm.251301	NM_172851	ENSMUSG00000067028	Cntnap5b	C230078M14Rik|Caspr5-2	contactin associated protein-like 5B	protein-coding	5.647	nan	2.860	6.006	1.780	1.286	4.843	5.223	3.336	7.793	3.611	3.402	4.794	3.387	5.224	6.217	3.729	5.521	nan	1.408	2.158	nan	1.967	2.874	8.962
13748	chr7	133818312	133821684	+	0	NA	intron (NM_025850, intron 1 of 10)	L1MA6|LINE|L1	-37213	NM_001286031	101437	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	6.524	2.866	1.274	10.107	3.092	1.205	2.874	7.583	5.853	7.196	2.232	1.877	6.145	8.493	4.923	5.936	3.962	9.056	0.712	0.877	0.324	0.946	0.738	0.472	5.506
7038	chr18	13019778	13021411	+	0	NA	intron (NM_153087, intron 2 of 2)	intron (NM_153087, intron 2 of 2)	13604	NM_153087	225192	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	3.959	2.471	0.400	8.244	1.993	0.557	3.207	5.243	3.400	6.282	1.706	1.877	5.077	3.546	5.013	7.323	3.446	6.707	3.531	1.206	1.235	4.360	2.507	2.342	10.658
2821	chr11	102050513	102052689	+	0	NA	intron (NM_001160711, intron 6 of 7)	intron (NM_001160711, intron 6 of 7)	10090	NM_001160713	52685	Mm.266885	NM_027987	ENSMUSG00000017309	Cd300lg	2310016B05Rik|Clm9|D11Ertd736e	CD300 molecule like family member G	protein-coding	5.688	5.137	2.589	3.886	2.997	2.277	4.999	5.694	2.418	3.209	2.378	1.464	4.045	5.467	5.712	6.251	5.119	3.869	4.134	nan	2.370	3.533	nan	nan	5.974
8141	chr2	32474801	32488185	+	0	NA	Intergenic	B3|SINE|B2	-30023	NM_146118	227731	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	6.376	1.723	0.694	3.982	1.892	1.135	7.194	4.589	nan	2.926	1.295	1.092	5.072	6.779	6.437	9.945	8.193	3.935	2.628	1.416	1.349	2.408	1.761	1.720	13.549
619	chr1	134212686	134218179	+	0	NA	intron (NM_001291930, intron 1 of 1)	Lx8|LINE|L1	19424	NM_001291928	11539	Mm.298908	NM_009629	ENSMUSG00000042429	Adora1	A1-AR|A1AR|A1R|AA1R|AI848715|BB176431|Ri	adenosine A1 receptor	protein-coding	13.976	5.599	2.519	7.017	3.707	2.089	10.372	8.029	5.505	7.281	7.736	3.166	9.778	10.405	9.255	13.575	8.861	8.733	6.426	3.316	2.367	7.084	4.788	3.938	12.566
2101	chr11	44351076	44361520	+	0	NA	Intergenic	L1MB2|LINE|L1	-43765	NM_001303244	16160	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	6.304	7.623	5.309	6.447	6.068	3.698	4.356	nan	5.592	7.714	3.920	2.784	5.864	7.290	4.872	nan	5.070	nan	nan	1.783	1.363	nan	nan	0.675	5.218
8390	chr2	77258747	77262674	+	0	NA	intron (NM_175465, intron 1 of 17)	intron (NM_175465, intron 1 of 17)	19882	NM_175465	228071	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	4.762	0.399	0.360	2.328	1.026	0.828	3.140	1.992	2.439	3.476	0.338	0.422	7.197	6.115	4.747	6.064	6.409	5.118	0.594	0.368	0.216	0.662	0.245	0.193	4.520
7676	chr19	28373142	28375340	+	0	NA	intron (NM_001305671, intron 3 of 9)	intron (NM_001305671, intron 3 of 9)	-303983	NR_045330	320176	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	nan	0.675	0.374	nan	0.473	0.002	0.498	3.453	0.999	0.762	7.807	3.101	0.567	1.230	0.776	0.804	0.502	0.632	3.774	1.247	0.669	6.359	nan	1.237	1.170
13207	chr7	53971872	53972705	+	0	NA	Intergenic	Intergenic	-80399	NR_105746	102466619		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	3.969	1.872	0.919	3.672	1.725	0.597	1.816	2.407	2.316	2.448	1.402	0.714	1.624	3.187	3.199	2.512	2.201	3.572	0.841	0.875	0.362	0.587	0.712	0.300	2.918
9457	chr3	88896985	88897927	+	0	NA	intron (NM_001242372, intron 22 of 32)	B1_Mus2|SINE|Alu	16494	NM_144898	229524	Mm.440405	NM_144898	ENSMUSG00000068922	Msto1	BC008103|mst	misato 1, mitochondrial distribution and morphology regulator	protein-coding	1.503	1.416	1.302	1.976	0.929	0.613	1.225	2.827	1.115	2.747	0.739	0.429	1.112	4.097	2.006	2.152	2.353	1.687	nan	2.435	1.615	2.730	2.988	3.859	1.069
9534	chr3	95329973	95333829	+	0	NA	intron (NM_001163641, intron 14 of 21)	intron (NM_001163641, intron 14 of 21)	13071	NM_001320492	76893	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	6.105	8.559	6.923	2.996	2.546	2.127	1.407	1.592	3.042	3.052	nan	1.499	1.820	2.801	2.721	2.702	2.622	2.516	1.276	1.907	2.131	0.602	0.969	0.744	2.492
7995	chr2	20479793	20482123	+	0	NA	intron (NM_001081006, intron 2 of 21)	L1_Mus1|LINE|L1	-29089	NM_029895	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	4.407	2.035	1.227	2.696	2.254	1.106	2.542	5.800	3.264	3.331	6.131	2.522	4.348	3.850	2.988	6.075	3.612	5.018	1.012	1.040	0.559	0.852	0.613	0.394	4.429
9595	chr3	100725451	100726889	+	0	NA	Intergenic	Intergenic	-40697	NM_010763	17156	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	6.201	8.805	3.741	5.941	4.408	1.483	6.810	3.859	3.654	4.909	3.721	2.693	5.394	7.291	5.828	7.057	5.535	4.577	3.549	2.433	2.303	4.304	3.330	2.427	10.177
4996	chr14	122503646	122507317	+	0	NA	Intergenic	L1Md_F3|LINE|L1	-28847	NM_144844	110821	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	8.733	12.725	3.547	10.061	5.058	3.115	8.206	11.040	5.873	8.794	7.230	4.268	8.419	9.549	10.871	11.356	6.157	9.573	5.872	2.806	2.911	6.852	5.938	5.855	13.001
7680	chr19	28901646	28903311	+	0	NA	intron (NM_009199, intron 7 of 11)	intron (NM_009199, intron 7 of 11)	-61442	NM_028922	74411	Mm.441887	NM_028922	ENSMUSG00000040105	Plpp6	4932443D16Rik|Ppapdc2	phospholipid phosphatase 6	protein-coding	7.024	0.480	0.303	3.245	2.109	2.085	6.190	5.604	4.041	4.526	7.225	2.162	3.949	6.772	5.228	6.297	9.158	5.711	nan	0.819	1.017	0.497	nan	0.169	7.043
9787	chr3	126308051	126318434	+	0	NA	Intergenic	X6A_LINE|LINE|CR1	-50610	NM_173451	271970	Mm.317021	NM_173451	ENSMUSG00000046561	Arsj	9330196J05Rik|D830047F08	arylsulfatase J	protein-coding	5.532	5.687	3.671	3.733	4.895	2.435	8.161	5.668	4.644	3.673	2.431	2.709	7.147	8.431	5.923	nan	4.673	6.716	1.291	1.402	0.764	0.811	0.800	0.734	3.832
11626	chr5	117623518	117627669	+	0	NA	intron (NM_001312914, intron 5 of 19)	intron (NM_001312914, intron 5 of 19)	211591	NM_001312914	333050	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	3.071	2.715	2.046	2.377	4.780	2.697	7.647	2.733	2.944	4.031	1.218	0.790	5.762	5.685	6.088	5.096	3.205	4.533	nan	nan	0.837	0.553	nan	0.941	3.449
9230	chr3	36344891	36351739	+	0	NA	Intergenic	ORR1F|LTR|ERVL-MaLR	-126040	NM_198192	229214	Mm.330975	NM_198192	ENSMUSG00000058400	Qrfpr	AQ27|Gpr103|SP9155	pyroglutamylated RFamide peptide receptor	protein-coding	3.509	1.321	0.641	3.329	3.898	1.693	6.024	2.620	nan	2.925	1.108	1.207	5.720	6.811	6.574	4.992	3.044	5.682	nan	0.796	0.387	nan	0.658	0.473	4.798
6768	chr17	57413807	57416461	+	0	NA	intron (NM_010130, intron 10 of 21)	L1_Mur2|LINE|L1	56448	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	7.930	nan	3.783	8.446	4.588	1.801	8.203	8.815	4.744	7.943	5.996	3.549	6.155	9.916	9.174	11.911	8.290	6.688	3.337	2.899	1.702	3.593	3.021	2.021	12.439
10689	chr4	134790908	134792121	+	0	NA	Intergenic	Intergenic	-23510	NM_145554	100017	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	3.303	1.908	0.625	3.546	1.865	0.718	1.578	2.131	nan	1.850	1.208	0.661	1.737	3.944	3.326	3.258	1.789	2.987	2.184	1.253	0.341	2.113	nan	0.290	3.890
10004	chr4	41250875	41256079	+	0	NA	intron (NM_026872, intron 1 of 28)	intron (NM_026872, intron 1 of 28)	21658	NM_026872	68926	Mm.41864	NM_026872	ENSMUSG00000028433	Ubap2	1190005K07Rik|AA408600|AU045235|UBAP-2|mKIAA1491	ubiquitin-associated protein 2	protein-coding	nan	6.870	4.293	1.448	1.235	1.101	0.809	1.098	1.305	1.048	1.006	0.786	0.815	0.988	1.070	1.296	0.955	nan	1.008	1.082	0.903	0.670	0.743	0.787	1.167
12817	chr6	137845511	137847479	+	0	NA	Intergenic	Intergenic	91918	NM_172733	232449	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	6.556	0.368	0.079	1.805	1.573	0.205	6.066	5.735	3.483	3.092	3.904	1.461	5.877	5.153	nan	7.277	6.209	6.024	nan	0.962	1.007	2.156	1.433	0.512	2.812
14188	chr8	45240212	45242360	+	0	NA	3' UTR (NM_028066, exon 15 of 15)	3' UTR (NM_028066, exon 15 of 15)	20745	NM_028066	109821	Mm.33326	NM_028066	ENSMUSG00000031645	F11	1600027G01Rik|AI503996|Cf11|FXI|PTA	coagulation factor XI	protein-coding	5.796	0.474	0.120	2.879	3.706	1.463	5.893	3.626	5.714	5.930	5.394	3.955	9.295	5.710	6.165	7.713	7.220	5.928	1.173	1.475	0.513	1.822	1.121	0.790	4.467
13636	chr7	120086005	120087221	+	0	NA	Intergenic	Intergenic	-15813	NM_145586	233806	Mm.257952	NM_145586	ENSMUSG00000030917	Tmem159	8430420C20Rik	transmembrane protein 159	protein-coding	1.692	0.613	0.469	1.339	1.853	1.068	2.331	2.298	2.066	2.609	0.649	0.330	3.413	4.271	3.223	2.849	2.658	2.535	1.674	0.756	0.403	0.835	0.649	0.914	1.891
3395	chr12	71325907	71330700	+	0	NA	Intergenic	URR1B|DNA|hAT-Charlie	18419	NM_001190466	59036	Mm.46662	NM_021532	ENSMUSG00000044548	Dact1	4921528D17Rik|AI115603|DAPPER|DAPPER1|FRODO|Frd1|Frodo1|MDpr1|MTNG3|THYEX3	dishevelled-binding antagonist of beta-catenin 1	protein-coding	11.522	1.515	0.765	5.022	3.219	1.656	5.083	8.054	2.958	4.009	3.996	2.072	7.851	7.902	7.036	nan	9.511	7.595	2.921	1.594	1.234	1.909	3.080	2.066	11.667
4908	chr14	99573285	99576795	+	0	NA	Intergenic	L2|LINE|L2	276349	NM_009769	12224	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding	5.831	nan	0.519	3.713	3.295	2.049	4.869	7.053	5.900	7.780	4.073	2.397	6.000	8.954	5.781	6.400	3.821	8.534	1.504	1.001	0.541	0.992	1.798	1.375	7.062
2322	chr11	63711146	63714550	+	0	NA	Intergenic	Intergenic	209436	NM_018805	54710	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	3.689	1.994	0.708	2.201	2.097	1.277	1.162	1.615	1.492	1.793	0.706	0.563	1.510	nan	2.213	2.503	2.529	2.657	0.621	0.431	0.396	0.443	nan	0.196	nan
7620	chr19	20604364	20606126	+	0	NA	intron (NM_013467, intron 1 of 12)	intron (NM_013467, intron 1 of 12)	3263	NM_013467	11668	Mm.250866	NM_013467	ENSMUSG00000053279	Aldh1a1	Ahd-2|Ahd2|Aldh1|Aldh1a2|E1|Raldh1	aldehyde dehydrogenase family 1, subfamily A1	protein-coding	3.407	1.368	0.528	4.557	4.293	2.588	6.691	7.664	2.646	2.501	0.763	2.290	1.364	2.431	2.473	5.309	7.294	3.181	0.553	0.823	0.628	0.796	1.130	0.607	4.616
13051	chr7	28516126	28517427	+	0	NA	Intergenic	L1MC|LINE|L1	-6060	NM_177396	338374	Mm.246799	NM_177396	ENSMUSG00000060747	Ifnl3	IFL-1|IL-28B|INF-alpha|INF-lambda|Il28|Il28b	interferon lambda 3	protein-coding	10.306	8.820	5.345	6.707	7.557	3.207	7.723	10.332	3.636	6.511	5.818	3.137	7.230	9.688	7.312	7.921	7.887	7.060	7.302	6.048	4.757	6.722	7.225	6.381	10.178
9372	chr3	67815409	67817714	+	0	NA	Intergenic	MER34A1|LTR|ERV1	-75659	NM_001113419	100505386	Mm.331064	NM_001113419	ENSMUSG00000102422	Gm21949	Iqcj-schip1|Schip-1-iqcj|Schip1	predicted gene, 21949	protein-coding	3.734	0.350	0.341	0.425	0.362	0.023	8.221	1.916	0.666	0.709	0.448	0.258	2.725	2.006	3.887	nan	6.296	3.140	0.494	0.542	0.213	0.465	0.364	0.256	3.158
3334	chr12	56086064	56087812	+	0	NA	Intergenic	Intergenic	-166305	NR_045048	100503961	Mm.136732	NR_045048		Gm19990	-	predicted gene, 19990	ncRNA	11.970	23.318	5.514	13.041	5.965	5.359	9.032	8.307	6.407	21.081	8.118	4.768	9.312	10.702	12.749	13.933	7.966	11.045	5.489	1.640	4.386	5.928	2.408	7.357	24.879
15030	chr9	45005311	45007356	+	0	NA	intron (NM_007648, intron 3 of 7)	B4A|SINE|B4	3257	NM_007648	12501	Mm.210361	NM_007648	ENSMUSG00000032093	Cd3e	AI504783|CD3|CD3epsilon|T3e	CD3 antigen, epsilon polypeptide	protein-coding	2.473	0.985	0.423	2.181	0.611	0.528	1.315	2.560	1.780	1.861	1.298	0.878	2.070	3.831	2.229	4.022	1.864	2.901	2.636	1.231	0.881	nan	1.446	0.547	6.295
13109	chr7	31603037	31606650	+	0	NA	Intergenic	L1M3|LINE|L1	100911	NM_001198871	100043836	Mm.296883	NM_001198871	ENSMUSG00000094053	Scgb2b7	Abpbg7|Gm4684	secretoglobin, family 2B, member 7	protein-coding	1.937	5.156	2.706	1.097	0.917	0.532	1.724	2.732	0.825	0.971	1.459	1.157	1.244	1.387	2.023	1.872	1.824	1.405	5.011	4.933	3.701	6.372	8.401	5.431	2.591
10528	chr4	126140573	126142760	+	0	NA	TTS (NM_028800)	TTS (NM_028800)	-6337	NM_172145	230752	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	0.955	1.124	0.933	1.129	1.233	1.013	0.630	0.998	0.793	0.815	0.652	0.708	0.369	0.654	nan	1.008	0.852	0.879	7.975	8.619	4.321	5.471	10.751	6.813	0.880
15746	chrX	71175240	71177288	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-34503	NM_001164190	17772	Mm.274981	NM_019926	ENSMUSG00000031337	Mtm1	AF073996|Mtm|mKIAA4176	X-linked myotubular myopathy gene 1	protein-coding	4.616	2.392	1.007	2.692	2.402	1.158	3.344	4.572	2.301	2.930	0.987	0.588	3.206	4.137	3.758	5.040	2.788	3.502	1.164	0.780	1.026	1.238	1.037	0.606	4.483
14246	chr8	63702139	63705254	+	0	NA	Intergenic	Intergenic	248474	NM_001195687	244495	Mm.485331	NM_001195687	ENSMUSG00000094443	Sgol2b	EG244495|Gm4975|Sgo2B	shugoshin like 2b (S. pombe)	protein-coding	8.272	5.871	1.814	8.534	3.402	3.057	8.333	10.264	6.487	12.806	5.439	5.263	9.898	8.654	10.830	11.818	7.184	9.583	3.783	2.294	3.399	6.323	2.821	4.557	16.391
10902	chr4	149164209	149165680	+	0	NA	intron (NM_001081274, intron 3 of 12)	intron (NM_001081274, intron 3 of 12)	1763	NM_001081274	110208	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	5.201	nan	1.560	3.592	7.316	4.840	5.762	1.429	1.780	2.542	2.581	2.104	3.691	6.774	3.989	1.741	2.111	2.054	6.174	5.436	5.281	6.306	16.156	15.266	2.512
10290	chr4	97480257	97483412	+	0	NA	Intergenic	Intergenic	-100109	NM_001122952	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	4.076	nan	0.859	4.254	3.698	1.318	2.097	5.080	4.490	4.478	1.051	0.743	3.701	4.745	3.389	4.491	3.693	4.118	1.073	0.627	0.740	nan	0.434	0.173	1.886
9340	chr3	60068232	60073276	+	0	NA	Intergenic	L1Md_T|LINE|L1	-11115	NM_032400	84112	Mm.125110	NM_032400	ENSMUSG00000027762	Sucnr1	Gpr91	succinate receptor 1	protein-coding	4.452	0.416	0.217	nan	5.706	4.892	5.867	3.377	5.393	5.185	3.027	1.590	6.190	6.302	nan	nan	4.858	nan	0.660	0.825	0.639	0.210	0.894	1.070	1.965
4778	chr14	65960788	65966988	+	0	NA	Intergenic	Intergenic	-4595	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	6.864	3.333	1.519	3.882	2.609	1.435	6.475	8.892	3.439	4.628	4.184	3.207	6.540	7.265	7.078	8.476	4.719	5.102	3.440	nan	1.038	3.174	2.587	1.837	8.555
6801	chr17	66795406	66800528	+	0	NA	intron (NM_008984, intron 17 of 30)	MER21B|LTR|ERVL	-203345	NM_028998	74556	Mm.218634	NM_028998	ENSMUSG00000024105	Themis3	9130404H23Rik	thymocyte selection associated family member 3	protein-coding	4.237	0.840	0.280	7.570	1.757	1.222	10.595	6.572	5.195	12.085	3.314	3.280	7.111	8.224	10.448	11.270	5.764	9.480	4.148	1.663	2.059	6.100	2.914	3.807	16.938
15204	chr9	65061360	65066873	+	0	NA	intron (NM_028906, intron 15 of 20)	intron (NM_028906, intron 15 of 20)	31658	NM_028906	74388	Mm.202749	NM_028906	ENSMUSG00000032393	Dpp8	2310004I03Rik|4932434F09Rik|AI666706|DPP VIII	dipeptidylpeptidase 8	protein-coding	5.982	4.421	1.108	6.168	2.912	2.404	5.718	8.052	4.251	5.829	3.606	3.628	7.351	8.016	nan	7.499	3.690	6.066	nan	1.746	2.455	3.747	2.248	2.763	9.050
7312	chr18	62325255	62340738	+	0	NA	intron (NM_008313, intron 1 of 6)	intron (NM_008313, intron 1 of 6)	8792	NM_008313	15562	Mm.20440	NM_008313	ENSMUSG00000026322	Htr4	5-HT-4|5-HT4|5-HT<4L>|5HTR4	5 hydroxytryptamine (serotonin) receptor 4	protein-coding	5.729	nan	1.196	6.085	3.172	1.552	2.722	6.431	4.001	4.499	3.270	1.679	nan	5.354	3.894	4.222	2.699	nan	nan	1.700	1.037	nan	0.596	0.405	nan
12397	chr6	86951622	86954428	+	0	NA	intron (NM_001040106, intron 9 of 20)	intron (NM_001040106, intron 9 of 20)	-56811	NM_001170591	56748	Mm.23809	NM_020045	ENSMUSG00000029993	Nfu1	0610006G17Rik|CGI-33|Hirip5	NFU1 iron-sulfur cluster scaffold	protein-coding	1.351	2.483	1.350	nan	1.015	0.366	2.817	1.732	1.334	1.533	6.816	1.171	3.305	2.570	1.310	2.222	1.425	1.981	nan	0.515	0.375	0.812	0.604	0.330	1.286
5355	chr15	76100644	76106036	+	0	NA	exon (NM_144848, exon 2 of 2)	exon (NM_144848, exon 2 of 2)	-13327	NM_144847	223649	Mm.101946	NM_144847	ENSMUSG00000075590	Nrbp2	BC011468	nuclear receptor binding protein 2	protein-coding	4.949	nan	0.797	nan	4.524	3.129	nan	6.733	2.268	nan	nan	2.478	3.742	nan	2.936	2.100	3.688	2.050	1.195	2.206	1.881	nan	1.388	1.117	2.159
9306	chr3	52420052	52423493	+	0	NA	Intergenic	MTC|LTR|ERVL-MaLR	153435	NM_019739	56458	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	5.473	2.631	2.053	3.820	4.976	2.732	2.593	4.991	5.005	5.956	1.069	1.735	5.125	6.296	2.252	2.967	2.427	3.927	1.288	1.137	0.650	1.162	1.512	1.514	3.584
377	chr1	87689679	87694120	+	0	NA	intron (NM_010566, intron 10 of 26)	intron (NM_010566, intron 10 of 26)	-64112	NM_029846	77040	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	7.519	7.354	2.289	7.827	4.841	3.331	6.162	5.923	4.843	8.979	3.796	2.964	7.231	6.757	6.065	8.664	5.309	7.572	3.082	1.546	1.749	nan	1.755	2.163	9.597
9488	chr3	90233699	90239199	+	0	NA	TTS (NM_206924)	TTS (NM_206924)	4852	NM_206924	23922	Mm.13912	NM_206924	ENSMUSG00000027937	Jtb	Gm622	jumping translocation breakpoint	protein-coding	7.326	5.498	2.811	6.228	3.585	2.609	6.713	6.708	4.894	5.278	3.189	2.287	6.666	7.149	6.294	6.360	5.610	7.526	4.893	3.521	4.093	5.271	7.384	8.554	7.276
15873	chrX	163536671	163538022	+	0	NA	intron (NM_008177, intron 1 of 2)	intron (NM_008177, intron 1 of 2)	12390	NM_008177	14829	Mm.4687	NM_008177	ENSMUSG00000031364	Grpr	GRP-R	gastrin releasing peptide receptor	protein-coding	2.669	6.385	1.993	3.577	1.348	0.576	1.741	4.748	3.624	3.643	0.778	1.020	2.795	3.722	4.751	5.044	2.129	5.813	0.928	1.054	0.777	1.445	0.622	0.393	3.725
602	chr1	133141400	133143114	+	0	NA	Intergenic	Intergenic	11091	NM_133819	108954	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	5.415	4.341	1.115	5.518	2.022	0.783	3.709	3.678	2.553	5.042	3.329	1.485	5.522	4.823	5.454	9.927	4.974	5.160	2.098	0.724	0.871	2.957	0.700	1.253	9.621
11813	chr5	136644819	136651786	+	0	NA	Intergenic	B3A|SINE|B2	-44844	NM_001303019	59310	Mm.5178	NM_021611	ENSMUSG00000005474	Myl10	1700027I08Rik|Mylc2pl|PLRLC	myosin, light chain 10, regulatory	protein-coding	7.759	8.578	3.437	5.205	4.210	3.264	8.933	7.140	4.720	6.040	8.519	5.360	6.711	8.751	7.172	7.609	6.906	6.638	2.730	2.631	2.490	4.053	nan	2.200	8.218
15475	chr9	107196875	107208868	+	0	NA	intron (NM_153413, intron 1 of 52)	L1Md_F2|LINE|L1	10064	NR_102273	100417434		NR_102273	ENSMUSG00000092125	AA543401	Mycs-like	myc-like oncogene, s-myc protein pseudogene	pseudo	8.606	3.664	0.854	7.468	3.073	1.266	4.180	5.882	nan	5.740	3.737	1.290	5.124	8.451	6.226	nan	4.308	nan	1.724	1.573	1.471	2.529	1.417	0.901	nan
15229	chr9	66471332	66475752	+	0	NA	exon (NM_145617, exon 54 of 78)	exon (NM_145617, exon 54 of 78)	41051	NM_175206	74165	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	3.396	0.971	0.589	2.620	1.350	0.693	3.622	3.211	3.550	3.921	0.994	1.532	4.248	4.342	4.668	7.173	3.879	4.612	nan	2.329	1.329	3.182	2.089	1.429	6.553
13263	chr7	72988446	72991414	+	0	NA	Intergenic	Intergenic	112138	NR_046024	625243	Mm.261798	NR_046024	ENSMUSG00000108383	Gm6567	-	predicted gene 6567	ncRNA	nan	0.486	0.343	1.397	4.417	4.593	6.157	3.851	3.368	4.077	3.219	1.432	6.569	6.081	4.508	3.630	2.413	2.654	0.917	1.008	0.669	0.623	0.666	0.719	5.140
15075	chr9	50653689	50658943	+	0	NA	intron (NM_145614, intron 4 of 13)	B1_Mm|SINE|Alu	3464	NM_145614	235339	Mm.285076	NM_145614	ENSMUSG00000000168	Dlat	6332404G05Rik|DLTA|PDC-E2	dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	protein-coding	3.124	0.995	0.379	1.752	1.163	0.603	2.416	4.346	2.176	3.157	2.730	2.130	5.003	5.452	5.073	6.406	4.630	1.940	1.289	0.817	0.753	nan	1.128	0.776	7.502
13714	chr7	129089270	129092718	+	0	NA	Intergenic	MER21C|LTR|ERVL	-166100	NM_001080963	381925	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	4.872	0.859	0.665	4.298	4.861	3.510	4.953	4.342	5.690	5.508	1.402	0.729	6.504	8.024	nan	3.862	4.496	6.920	0.843	0.878	0.604	0.503	1.016	0.579	4.792
612	chr1	134041965	134043561	+	0	NA	intron (NM_021355, intron 2 of 2)	intron (NM_021355, intron 2 of 2)	5248	NM_021355	14264	Mm.287146	NM_021355	ENSMUSG00000041559	Fmod	AI131919|AU041740|SLRR2E	fibromodulin	protein-coding	5.798	0.832	0.265	2.359	2.966	1.555	3.408	6.034	2.131	3.274	5.992	2.458	2.544	5.024	3.727	nan	1.752	3.998	4.272	2.483	2.853	4.594	4.543	3.240	4.069
5057	chr15	12133496	12137825	+	0	NA	intron (NM_011767, intron 2 of 19)	intron (NM_011767, intron 2 of 19)	17809	NM_011767	22763	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	7.532	8.939	3.680	7.216	3.414	2.578	6.814	12.853	4.724	8.562	3.788	2.592	7.556	7.761	8.301	7.470	6.850	8.069	3.647	2.422	2.634	4.024	3.272	3.562	9.485
6547	chr17	32246088	32248277	+	0	NA	intron (NM_198094, intron 2 of 12)	intron (NM_198094, intron 2 of 12)	5262	NR_102329	100043434		NR_102329		Gm4432	-	predicted gene 4432	pseudo	1.055	1.384	0.658	1.244	0.604	0.446	1.147	2.291	1.953	1.886	3.009	4.963	0.865	1.203	0.980	nan	0.707	0.955	2.449	1.196	0.784	1.894	1.066	0.846	1.075
13528	chr7	108819653	108825023	+	0	NA	Intergenic	L1Md_T|LINE|L1	3659	NM_146726	258721	Mm.377655	NM_146726	ENSMUSG00000066241	Olfr514	MOR268-1	olfactory receptor 514	protein-coding	4.169	1.229	0.869	3.956	3.825	2.956	5.008	6.688	3.679	4.889	0.603	0.828	7.488	9.100	6.455	6.913	7.548	5.489	nan	1.974	1.638	2.566	1.276	1.088	8.528
1391	chr10	67907838	67909899	+	0	NA	intron (NM_178679, intron 2 of 4)	intron (NM_178679, intron 2 of 4)	3794	NM_178679	216049	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding	8.169	8.052	4.338	4.079	2.556	1.510	4.413	6.234	4.002	3.132	3.204	2.104	3.432	4.265	4.468	4.844	5.327	nan	6.155	4.200	2.842	5.510	3.414	2.825	4.523
11645	chr5	119548162	119551109	+	0	NA	Intergenic	B3|SINE|B2	30723	NR_045702	100993	Mm.381453	NR_045702	ENSMUSG00000087516	AW549542	-	expressed sequence AW549542	ncRNA	0.583	0.381	0.227	0.339	0.417	0.082	0.261	0.191	0.184	0.214	0.282	0.239	0.075	0.195	0.102	0.301	0.570	0.228	4.133	nan	4.097	3.205	4.230	3.036	0.200
11240	chr5	53853459	53855489	+	0	NA	intron (NM_144517, intron 11 of 20)	intron (NM_144517, intron 11 of 20)	44847	NM_144517	67249	Mm.28823	NM_144517	ENSMUSG00000039178	Tbc1d19	2810453K03Rik	TBC1 domain family, member 19	protein-coding	2.735	0.800	0.568	2.303	2.804	2.241	5.614	4.004	3.683	3.403	5.449	2.437	5.445	5.839	5.457	5.898	4.166	4.636	1.011	0.738	0.679	1.601	0.831	0.606	4.241
3579	chr12	86872343	86875538	+	0	NA	Intergenic	B1_Mm|SINE|Alu	10874	NM_145836	238330	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	4.565	5.538	2.268	7.485	3.395	1.836	0.936	1.770	2.705	3.355	3.022	0.866	1.075	3.516	1.633	2.450	1.049	3.621	0.834	0.759	0.686	1.298	0.537	0.315	nan
5234	chr15	59659187	59663789	+	0	NA	Intergenic	B4A|SINE|B4	12834	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	4.890	1.785	0.796	nan	2.057	0.826	3.659	6.754	nan	2.717	1.219	1.110	3.862	5.212	5.609	4.670	3.531	3.966	2.020	0.834	0.300	2.478	0.935	0.430	3.998
2794	chr11	100843629	100845987	+	0	NA	intron (NM_001113563, intron 1 of 18)	intron (NM_001113563, intron 1 of 18)	5777	NM_001113563	20851	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	3.606	nan	0.391	3.537	1.900	1.174	4.974	4.303	4.017	4.112	1.587	1.861	4.708	5.084	5.770	6.114	3.704	4.199	1.578	nan	0.750	1.473	nan	nan	4.528
14451	chr8	90969208	90979322	+	0	NA	intron (NM_001310530, intron 3 of 37)	intron (NM_001310530, intron 3 of 37)	42016	NM_001310530	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	3.273	0.739	0.449	4.917	4.236	2.687	1.039	2.391	nan	9.011	0.552	0.633	5.758	10.111	3.267	3.574	3.510	4.876	nan	4.315	3.459	8.724	2.655	2.304	4.095
13006	chr7	25856294	25858786	+	0	NA	Intergenic	Intergenic	-40118	NM_009999	13088	Mm.218749	NM_009999	ENSMUSG00000030483	Cyp2b10	Cyp2b|Cyp2b20|p16	cytochrome P450, family 2, subfamily b, polypeptide 10	protein-coding	3.947	3.150	1.417	5.359	5.599	3.796	7.847	5.065	2.308	5.506	0.731	1.430	4.548	6.064	5.076	6.673	6.717	5.514	7.366	8.167	5.774	6.323	9.947	10.224	10.569
10299	chr4	98778039	98779154	+	0	NA	exon (NM_172872, exon 3 of 10)	exon (NM_172872, exon 3 of 10)	-15172	NR_040437	399570	Mm.71924	NR_040437	ENSMUSG00000085843	Kank4os	A730085A09Rik	KN motif and ankyrin repeat domains 4, opposite strand	ncRNA	3.364	nan	0.349	3.081	3.410	1.893	2.328	2.679	2.906	2.707	1.391	1.040	3.761	4.161	4.341	4.581	1.825	4.176	0.860	0.571	0.023	nan	0.512	0.392	5.223
5884	chr16	21292867	21295672	+	0	NA	intron (NR_046162, intron 1 of 4)	intron (NR_046162, intron 1 of 4)	2603	NR_046162	328646	Mm.404748	NR_046162	ENSMUSG00000096918	Gm16863	A830060N17	predicted gene, 16863	ncRNA	2.169	0.502	0.231	1.488	1.767	1.086	2.338	3.169	2.061	nan	1.393	0.784	2.335	4.720	3.429	3.740	2.324	2.791	2.342	1.472	1.644	2.307	3.003	2.522	3.582
214	chr1	58858715	58860329	+	0	NA	Intergenic	RMER17D2|LTR|ERVK	57020	NM_001080126	12370	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	10.554	11.326	7.184	7.045	9.179	4.683	2.775	3.317	4.147	6.267	3.188	1.993	2.793	5.321	3.756	4.508	5.635	4.466	9.473	10.738	6.598	8.261	8.279	5.691	5.625
10269	chr4	94280451	94282044	+	0	NA	Intergenic	B3|SINE|B2	275549	NM_026368	67770	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	6.302	3.688	1.500	5.552	3.192	0.951	4.092	4.547	nan	4.417	3.679	1.941	4.623	6.200	5.427	5.814	3.276	5.895	4.162	1.762	1.199	5.952	3.309	1.755	6.141
6622	chr17	43128367	43129621	+	0	NA	Intergenic	Intergenic	29297	NR_045155	545207	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	5.172	1.476	1.183	1.625	1.879	0.898	8.532	5.141	4.554	4.758	4.711	3.495	5.123	4.893	5.962	7.301	3.799	6.111	1.597	0.278	0.293	0.668	0.549	0.442	4.769
8427	chr2	90451826	90453926	+	0	NA	intron (NM_001135657, intron 13 of 25)	intron (NM_001135657, intron 13 of 25)	26298	NM_001135657	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	5.334	1.075	0.703	2.989	3.435	1.717	2.826	5.964	3.665	3.207	6.401	3.514	3.094	3.894	3.617	4.065	3.140	4.996	1.581	1.099	0.524	1.413	1.345	0.645	3.873
2789	chr11	100773357	100775274	+	0	NA	Intergenic	ORR1B2|LTR|ERVL-MaLR	-3358	NM_031871	80860	Mm.37308	NM_031871	ENSMUSG00000017747	Ghdc	D11Lgp1e	GH3 domain containing	protein-coding	3.616	nan	1.169	4.687	7.365	6.479	4.078	3.923	4.391	3.514	1.488	1.924	4.545	6.650	5.356	5.838	4.036	5.782	3.804	1.786	2.182	1.562	nan	nan	3.776
6718	chr17	48203191	48205998	+	0	NA	Intergenic	MMERGLN-int|LTR|ERV1	-28145	NM_001347399	58217	Mm.248352	NM_021406	ENSMUSG00000042265	Trem1	-	triggering receptor expressed on myeloid cells 1	protein-coding	2.684	0.700	0.418	2.757	2.604	1.513	3.458	2.663	4.940	6.784	0.445	0.466	3.255	nan	3.937	6.834	5.963	4.028	0.888	0.666	0.854	0.628	0.322	0.481	5.391
12213	chr6	48788665	48792286	+	0	NA	Intergenic	Intergenic	-19624	NM_031247	83408	Mm.333050	NM_031247	ENSMUSG00000039264	Gimap3	2010110D23Rik|Gimap5|Ian4	GTPase, IMAP family member 3	protein-coding	14.290	5.429	2.196	11.450	5.894	2.994	16.494	13.953	5.817	8.208	6.993	3.025	13.433	16.036	12.035	15.674	9.644	11.140	8.370	6.301	3.895	9.382	7.822	4.964	14.129
2074	chr11	32540989	32546776	+	0	NA	intron (NM_009288, intron 1 of 18)	intron (NM_009288, intron 1 of 18)	10616	NM_009288	20868	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	5.775	6.730	3.019	nan	6.637	5.454	6.831	5.493	4.522	7.762	3.980	2.904	6.289	7.039	6.889	7.062	5.073	6.349	3.732	2.357	2.851	3.603	2.798	3.173	7.592
731	chr1	152647388	152648764	+	0	NA	intron (NM_001346118, intron 2 of 18)	MT2B|LTR|ERVL	-22859	NM_016846	19731	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	9.508	0.995	0.251	3.017	0.929	0.354	5.607	3.337	3.595	3.552	0.649	0.319	6.355	3.604	4.001	7.954	4.334	5.442	0.512	0.789	0.224	0.874	0.414	0.161	5.767
2547	chr11	83601746	83606936	+	0	NA	intron (NR_036453, intron 2 of 8)	(CAAAC)n|Simple_repeat|Simple_repeat	-11254	NM_009139	20305	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	2.341	1.418	0.784	nan	1.372	0.989	3.844	5.117	1.613	1.088	2.097	2.418	2.008	2.978	3.746	2.476	2.647	1.779	0.997	1.077	0.939	nan	0.953	1.068	nan
12481	chr6	92937257	92938709	+	0	NA	Intergenic	Intergenic	-2599	NR_015530	330385	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	6.412	0.854	0.268	4.944	2.372	0.857	9.768	7.546	3.710	3.301	1.088	0.396	7.389	6.154	11.514	14.618	7.986	7.623	nan	0.592	0.358	0.683	0.286	0.330	10.526
9215	chr3	30875054	30877566	+	0	NA	intron (NM_001286994, intron 1 of 3)	Lx9|LINE|L1	20360	NM_001286994	71862	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	4.848	0.904	0.843	nan	5.228	4.337	7.825	5.129	4.588	3.615	1.963	2.482	6.014	5.423	nan	5.332	6.813	5.523	1.081	1.074	1.232	0.492	0.943	0.893	3.200
13822	chr7	139618922	139621497	+	0	NA	intron (NM_001302546, intron 40 of 58)	intron (NM_001302546, intron 40 of 58)	-37412	NR_027857	14912	Mm.28308	NM_183248	ENSMUSG00000041309	Nkx6-2	Gtx|Nkx6.2	NK6 homeobox 2	protein-coding	3.063	nan	0.750	2.278	2.424	2.603	3.630	2.649	nan	3.465	1.211	0.388	5.196	5.422	3.773	2.310	2.828	3.957	0.516	0.594	0.596	0.657	0.202	0.292	3.077
11509	chr5	104252092	104253931	+	0	NA	Intergenic	RCHARR1|DNA|hAT-Charlie	-46276	NM_008318	15891	Mm.4987	NM_008318	ENSMUSG00000029306	Ibsp	BSP|BSP II|BSPII|Bsp2	integrin binding sialoprotein	protein-coding	5.951	1.107	0.662	2.208	4.762	3.828	8.421	5.696	3.842	4.207	4.981	4.064	5.155	6.654	6.865	6.560	7.722	4.033	nan	2.217	1.197	1.407	1.055	1.083	3.861
8067	chr2	29474371	29491405	+	0	NA	intron (NM_026896, intron 4 of 7)	intron (NM_026896, intron 4 of 7)	-7594	NR_105753	102465170		NR_105753	ENSMUSG00000098539	Mir133c	Gm27865|mmu-mir-133c	microRNA 133c	ncRNA	5.068	17.772	6.515	4.980	2.941	1.692	2.954	5.007	nan	3.872	2.138	1.420	4.166	4.769	4.402	6.832	4.590	5.497	1.862	1.506	1.479	2.583	1.238	1.050	6.886
4281	chr13	91880408	91881473	+	0	NA	3' UTR (NM_009027, exon 15 of 15)	3' UTR (NM_009027, exon 15 of 15)	-4055	NM_198415	76722	Mm.316438	NM_198415	ENSMUSG00000021622	Ckmt2	2300008A19Rik|ScCKmit	creatine kinase, mitochondrial 2	protein-coding	4.865	2.024	0.247	2.110	0.440	0.223	1.934	1.964	0.598	2.034	0.733	0.093	1.284	3.280	1.441	1.233	1.808	0.925	2.156	2.150	1.478	4.872	2.205	3.061	9.670
11347	chr5	73494144	73496222	+	0	NA	intron (NM_001190733, intron 1 of 9)	intron (NM_001190733, intron 1 of 9)	4157	NM_178896	100737	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	1.930	0.634	0.188	1.950	0.882	0.222	0.924	1.827	1.796	1.410	2.379	3.839	1.037	0.999	1.898	2.635	1.498	2.999	7.480	4.891	3.215	10.039	5.140	4.085	1.905
1928	chr11	5246700	5250937	+	0	NA	intron (NM_032396, intron 1 of 8)	intron (NM_032396, intron 1 of 8)	-5780	NR_037240	100526548		NR_037240	ENSMUSG00000093169	Mir3079	mmu-mir-3079	microRNA 3079	ncRNA	4.682	1.585	1.257	3.018	4.437	3.342	2.961	4.654	2.729	3.776	1.321	1.104	3.728	5.088	2.051	3.440	4.268	4.522	2.369	nan	1.307	1.008	4.636	3.370	1.172
1092	chr10	9046895	9049402	+	0	NA	Intergenic	Intergenic	-162078	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	3.620	0.302	0.128	1.983	2.268	1.547	4.409	3.448	3.228	4.083	1.426	1.222	5.130	5.546	5.060	4.165	3.903	4.679	0.921	1.041	0.489	1.111	0.892	0.820	2.985
6396	chr17	24606614	24610319	+	0	NA	intron (NM_001286718, intron 22 of 39)	intron (NM_001286718, intron 22 of 39)	24161	NM_011647	22084	Mm.30435	NM_011647	ENSMUSG00000002496	Tsc2	Nafld|Tcs2	tuberous sclerosis 2	protein-coding	5.356	7.716	1.937	6.305	2.589	1.590	5.373	6.062	4.349	8.364	4.835	3.027	4.546	5.912	6.931	8.186	3.584	6.458	5.114	1.407	2.189	5.673	2.213	2.661	12.864
8593	chr2	119964453	119969143	+	0	NA	3' UTR (NM_013720, exon 24 of 24)	3' UTR (NM_013720, exon 24 of 24)	-5901	NM_011941	26390	Mm.330501	NM_011941	ENSMUSG00000033902	Mapkbp1	2810483F24Rik|AW123212|JNKBP-1|Jnkbp1|mKIAA0596	mitogen-activated protein kinase binding protein 1	protein-coding	4.417	4.141	2.016	4.593	3.357	1.640	2.193	2.531	3.384	3.084	2.672	2.042	3.122	3.612	3.776	nan	2.960	5.430	1.859	1.070	1.104	1.802	0.888	0.610	3.517
1756	chr10	116137923	116139674	+	0	NA	intron (NM_011217, intron 2 of 13)	intron (NM_011217, intron 2 of 13)	-5100	NM_001161837	19279	Mm.336316	NM_011217	ENSMUSG00000020151	Ptprr	Gmcp1|PTP-SL|PTPBR7|RPTPRR|mPTP213	protein tyrosine phosphatase, receptor type, R	protein-coding	3.186	0.937	1.486	3.809	4.448	3.866	2.561	0.921	3.062	3.604	0.968	0.920	3.409	5.484	1.804	2.136	1.993	nan	0.374	0.405	0.666	0.168	0.721	0.621	3.135
2255	chr11	59454511	59459833	+	0	NA	non-coding (NR_037992, exon 6 of 6)	non-coding (NR_037992, exon 6 of 6)	7127	NM_001205068	194952	Mm.295954	NM_178659	ENSMUSG00000036819	Jmjd4	6430559I23	jumonji domain containing 4	protein-coding	4.400	0.874	0.402	2.921	5.169	3.466	3.940	2.963	3.918	5.048	4.434	1.706	6.210	5.372	3.676	4.801	3.053	5.917	nan	1.194	1.148	0.974	0.981	0.965	5.013
9334	chr3	58319922	58323737	+	0	NA	Intergenic	PB1D10|SINE|Alu	-92891	NM_001347233	72033	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	3.051	13.214	8.332	nan	2.190	1.584	2.082	1.632	2.689	2.259	1.176	0.875	2.675	2.977	nan	2.318	1.563	nan	0.932	1.405	1.485	0.584	0.646	0.273	1.723
14446	chr8	90862571	90866733	+	0	NA	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	35817	NM_177224	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	5.338	0.832	0.499	3.680	6.962	5.413	2.847	1.879	3.352	4.353	2.076	1.206	6.024	8.213	3.487	5.373	4.714	5.258	nan	1.239	1.031	1.098	0.802	0.435	4.662
11963	chr5	148362899	148364413	+	0	NA	intron (NM_001301424, intron 2 of 12)	intron (NM_001301424, intron 2 of 12)	29159	NM_001301424	11987	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	3.490	0.850	0.344	nan	1.463	0.983	4.947	3.023	3.022	3.388	0.837	0.896	4.251	4.691	3.650	nan	3.481	3.727	0.403	0.525	0.405	0.579	0.836	0.250	nan
7086	chr18	25795671	25799641	+	0	NA	Intergenic	Intergenic	-43673	NM_001174074	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	2.034	1.427	0.851	0.628	0.432	0.297	3.842	5.343	1.110	1.355	2.729	2.504	3.178	1.102	1.274	nan	1.256	1.615	nan	1.328	0.793	nan	1.150	1.061	1.446
10763	chr4	137859794	137861394	+	0	NA	Intergenic	Intergenic	-1643	NM_199307	230857	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	nan	5.262	1.538	6.811	2.260	1.216	4.663	1.379	nan	3.758	1.616	0.935	1.790	4.051	3.387	3.391	1.131	nan	2.887	1.409	1.905	4.278	nan	1.873	7.374
4885	chr14	78729858	78731411	+	0	NA	Intergenic	Intergenic	-5545	NM_001081336	380921	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	2.795	1.507	0.421	2.534	1.894	0.895	2.753	2.220	2.178	2.488	2.093	0.374	5.174	5.066	4.554	6.665	2.675	3.916	1.326	0.586	0.709	1.491	0.513	0.184	3.449
14560	chr8	108830654	108833320	+	0	NA	intron (NM_007496, intron 3 of 9)	intron (NM_007496, intron 3 of 9)	-104873	NR_037295	100526511		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	5.132	3.320	2.064	3.285	2.734	1.413	4.119	8.601	3.678	4.003	2.854	2.963	7.261	6.441	4.766	5.607	5.412	5.186	5.511	5.827	2.773	nan	6.703	2.969	4.397
14163	chr8	37666234	37668704	+	0	NA	intron (NM_145841, intron 3 of 7)	L1Md_A|LINE|L1	584733	NR_029884	723860		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA	2.882	0.723	0.634	3.717	2.501	1.054	1.705	1.513	2.009	2.192	0.383	0.483	1.967	2.041	2.085	3.485	1.514	3.064	0.474	0.703	0.532	0.518	0.446	0.268	2.650
9252	chr3	38280427	38283083	+	0	NA	Intergenic	Intergenic	-73636	NR_040541	71342	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	2.141	0.574	0.492	1.259	1.497	0.823	1.615	3.293	nan	1.521	5.782	4.312	1.655	1.626	1.243	1.195	1.193	1.761	nan	1.432	1.169	nan	1.731	0.963	0.882
15855	chrX	159325232	159326848	+	0	NA	intron (NM_001346675, intron 6 of 23)	intron (NM_001346675, intron 6 of 23)	-46155	NM_025437	66235	Mm.294623	NM_025437	ENSMUSG00000067194	Eif1ax	1500010B24Rik|AI426898|Eif1ay	eukaryotic translation initiation factor 1A, X-linked	protein-coding	4.081	3.097	1.298	5.204	3.632	4.231	2.744	3.602	2.185	5.077	2.524	2.099	3.228	4.792	3.454	4.861	3.118	3.736	1.712	1.226	1.975	2.531	1.167	2.395	5.781
4748	chr14	63746754	63752689	+	0	NA	intron (NM_173393, intron 1 of 2)	intron (NM_173393, intron 1 of 2)	22532	NR_030611	100124452		NR_030611	ENSMUSG00000076049	Mir598	Mirn598|mir-598|mmu-mir-598	microRNA 598	ncRNA	8.454	4.702	1.592	7.754	6.311	3.073	5.686	9.892	6.132	7.796	4.279	3.009	7.175	9.168	9.772	10.021	4.458	8.851	3.076	nan	1.244	2.506	2.183	1.046	9.792
738	chr1	153465056	153468496	+	0	NA	intron (NM_007842, intron 15 of 27)	intron (NM_007842, intron 15 of 27)	20884	NM_007842	13211	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	7.953	1.253	0.562	2.958	3.442	1.415	3.876	5.102	4.122	4.904	3.448	1.321	4.018	5.297	5.897	nan	5.210	4.823	nan	0.692	0.805	0.612	nan	0.336	5.282
13891	chr7	148556988	148558907	+	0	NA	Intergenic	Intergenic	3243112	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	4.977	3.182	2.247	nan	4.770	4.923	3.651	4.833	3.414	2.796	4.562	3.673	3.103	4.202	2.755	2.623	3.207	2.389	1.181	1.809	2.347	0.878	nan	1.598	2.286
484	chr1	99964360	99966785	+	0	NA	intron (NM_172851, intron 2 of 23)	intron (NM_172851, intron 2 of 23)	192807	NM_172851	241175	Mm.251301	NM_172851	ENSMUSG00000067028	Cntnap5b	C230078M14Rik|Caspr5-2	contactin associated protein-like 5B	protein-coding	nan	nan	0.272	1.925	0.732	0.097	2.374	1.652	1.672	2.019	2.717	1.703	3.413	3.125	3.562	4.067	2.633	3.085	nan	0.662	0.301	nan	0.821	0.136	nan
12306	chr6	71605700	71609456	+	0	NA	exon (NM_173001, exon 11 of 26)	exon (NM_173001, exon 11 of 26)	25108	NM_173001	104263	Mm.260479	NM_173001	ENSMUSG00000053470	Kdm3a	1700105C21Rik|C230043E16Rik|JHDM2a|Jmjd1|Jmjd1a|KDM2A|TGSA|Tsga	lysine (K)-specific demethylase 3A	protein-coding	5.570	0.416	0.324	1.171	3.666	2.398	8.483	10.942	3.168	3.817	0.368	1.048	7.282	8.195	6.141	6.313	6.275	4.278	0.702	0.536	0.620	0.452	0.370	0.485	2.398
1243	chr10	41790816	41793849	+	0	NA	intron (NM_026643, intron 1 of 10)	intron (NM_026643, intron 1 of 10)	17331	NM_001243075	103268	Mm.338605	NM_026643	ENSMUSG00000019813	Cep57l1	2410017P07Rik|4930484D11Rik|AI607327|cep57R	centrosomal protein 57-like 1	protein-coding	4.605	0.975	0.318	2.251	1.213	0.604	1.719	3.128	2.376	3.622	1.325	0.624	2.670	5.363	3.054	4.640	2.780	4.843	0.661	0.684	0.647	0.854	0.629	0.533	6.828
3408	chr12	71974019	71975909	+	0	NA	intron (NM_172464, intron 18 of 25)	intron (NM_172464, intron 18 of 25)	85421	NM_001286452	208846	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	4.730	0.708	0.534	1.851	1.243	0.455	3.107	1.226	1.884	2.133	1.928	0.532	4.058	4.545	2.868	4.788	4.839	3.190	0.879	1.217	0.416	0.670	0.526	0.162	5.123
4833	chr14	73571019	73574791	+	0	NA	intron (NM_011506, intron 4 of 10)	L1MB1|LINE|L1	20119	NM_011506	20916	Mm.38951	NM_011506	ENSMUSG00000022110	Sucla2	4930547K18Rik|A-SCS	succinate-Coenzyme A ligase, ADP-forming, beta subunit	protein-coding	4.335	2.145	1.250	3.518	2.780	2.485	2.455	4.036	3.694	3.804	2.629	1.890	4.382	6.058	3.662	3.875	2.353	3.043	0.712	0.726	1.034	0.940	0.779	0.715	4.380
10138	chr4	59799134	59800964	+	0	NA	Intergenic	B1F|SINE|Alu	-5601	NM_172468	209131	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	4.861	nan	0.917	2.257	3.808	2.657	nan	2.918	2.422	4.016	0.742	0.546	3.543	6.282	4.543	5.563	3.456	4.218	3.130	3.203	2.358	7.414	4.439	2.661	3.895
7860	chr19	48003146	48006520	+	0	NA	intron (NM_001163267, intron 15 of 17)	intron (NM_001163267, intron 15 of 17)	67121	NM_001163267	381229	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	4.973	0.953	0.342	2.853	4.674	3.132	4.353	5.369	3.449	3.490	5.784	1.936	3.149	5.982	4.499	4.500	4.366	6.690	0.664	0.737	0.774	0.912	0.707	0.874	6.065
623	chr1	134284361	134288806	+	0	NA	Intergenic	B1_Mur3|SINE|Alu	-3421	NM_031189	17928	Mm.16528	NM_031189	ENSMUSG00000026459	Myog	MYF4|bHLHc3|myo	myogenin	protein-coding	3.810	2.980	1.027	nan	1.824	0.747	0.802	0.958	1.617	2.539	0.889	1.127	1.025	nan	1.835	2.873	1.144	3.452	6.116	2.163	2.823	4.824	4.041	3.362	nan
3885	chr13	23829717	23832663	+	0	NA	Intergenic	ORR1D1|LTR|ERVL-MaLR	-8244	NM_001164743	105355	Mm.27038	NM_134069	ENSMUSG00000036083	Slc17a3	AW261723|Npt4	solute carrier family 17 (sodium phosphate), member 3	protein-coding	10.147	16.267	5.167	11.995	5.758	2.248	6.102	6.813	6.864	9.494	6.609	3.143	7.183	11.967	10.127	9.875	5.294	10.322	4.191	2.524	1.387	5.156	2.079	1.292	11.677
4091	chr13	47857579	47861739	+	0	NA	Intergenic	Intergenic	-50776	NR_045156	619327	Mm.412752	NR_045156		G630093K05Rik	-	RIKEN cDNA G630093K05 gene	ncRNA	nan	0.475	0.365	nan	0.231	0.100	0.265	0.222	0.384	0.294	0.521	0.283	0.133	0.289	0.303	0.632	0.299	nan	4.413	nan	0.650	4.842	1.523	0.929	nan
14658	chr8	120807105	120810342	+	0	NA	Intergenic	Intergenic	70084	NM_001301811	15900	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	1.697	0.521	0.163	1.559	1.653	1.423	3.112	1.924	2.344	3.054	4.860	3.696	1.014	3.912	1.776	nan	0.652	2.034	4.752	2.877	3.731	11.473	5.814	4.845	2.219
11130	chr5	32362365	32363611	+	0	NA	intron (NM_172147, intron 4 of 4)	B1_Mm|SINE|Alu	9408	NM_172147	665270	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	3.857	0.450	0.494	nan	2.597	1.509	2.636	1.954	1.907	1.589	1.355	0.895	3.781	4.410	1.608	1.834	3.407	2.922	0.732	1.469	0.464	0.582	0.704	0.741	0.698
8688	chr2	132088353	132090855	+	0	NA	intron (NM_018824, intron 4 of 15)	intron (NM_018824, intron 4 of 15)	55504	NM_018824	54338	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	9.190	11.428	4.526	7.918	6.388	4.052	4.710	8.620	4.774	7.966	4.617	3.207	4.840	7.494	6.136	8.075	5.761	6.098	nan	5.824	4.525	6.456	6.813	5.962	10.148
2382	chr11	69713721	69716288	+	0	NA	Intergenic	Intergenic	-18906	NM_001159503	619441	Mm.8983	NM_001034097	ENSMUSG00000018752	Tnfsfm13	Tnfsf12-Tnfsf13|Tnfsf12Tnfsf13|Tnfsf12tnfsf13|Twe-pril	tumor necrosis factor (ligand) superfamily, membrane-bound member 13	protein-coding	9.513	9.996	4.618	9.073	3.927	2.961	8.260	8.227	4.751	12.244	7.792	5.182	7.708	11.205	9.920	10.742	7.614	9.262	5.183	3.940	3.934	5.440	nan	3.865	13.413
2564	chr11	85338292	85341073	+	0	NA	exon (NM_016910, exon 5 of 6)	exon (NM_016910, exon 5 of 6)	-13482	NM_001166642	192197	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	3.137	1.673	0.344	4.923	1.118	0.386	0.965	1.038	2.274	1.673	0.953	1.056	0.674	1.552	1.563	2.350	0.941	2.986	0.925	1.452	0.237	nan	0.385	0.300	1.829
4502	chr14	21197744	21199542	+	0	NA	intron (NM_001243041, intron 4 of 10)	intron (NM_001243041, intron 4 of 10)	122491	NM_001243041	11534	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	6.293	15.452	5.542	5.339	3.134	1.310	4.182	9.581	5.807	8.775	4.394	1.908	6.643	8.812	7.752	7.572	3.922	6.237	1.220	0.731	0.610	1.756	0.552	0.475	7.043
12745	chr6	128746150	128750220	+	0	NA	Intergenic	L1_Mur2|LINE|L1	-25139	NM_001099918	100043861	Mm.66911	NM_001099918	ENSMUSG00000079299	Klrb1	4930431A04Rik|Gm4696|Klrb1g|Klrb6|Ly-55|Ly55|NKR-P1G|Nkrp-1e|Nkrp1g	killer cell lectin-like receptor subfamily B member 1	protein-coding	2.769	8.636	4.697	2.378	2.498	1.812	2.038	nan	1.933	2.596	2.559	1.319	1.936	3.814	2.418	nan	4.441	2.005	2.150	2.434	1.644	2.934	2.069	2.339	3.035
9304	chr3	52262234	52263305	+	0	NA	Intergenic	Intergenic	-5568	NM_019739	56458	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	2.184	12.250	4.268	3.736	2.143	0.451	1.409	1.354	2.517	2.569	0.287	1.519	3.184	3.861	2.143	3.225	1.430	3.425	2.042	1.453	0.801	2.094	0.415	0.482	2.541
4462	chr14	9089782	9092367	+	0	NA	Intergenic	Intergenic	424684	NR_045968	74859	Mm.84041	NR_045968	ENSMUSG00000097898	4930455B14Rik	1700027C12Rik	RIKEN cDNA 4930455B14 gene	ncRNA	4.961	0.574	0.200	1.396	1.261	0.803	6.532	15.324	2.475	2.346	2.667	1.758	3.464	6.208	5.113	8.155	5.361	1.906	0.794	0.739	0.486	0.732	0.634	0.567	6.934
14094	chr8	26345954	26351889	+	0	NA	Intergenic	Intergenic	190752	NM_199042	73754	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	5.649	nan	0.901	4.486	5.675	5.642	3.392	6.307	3.361	3.694	1.144	1.126	3.061	5.603	4.033	4.143	3.376	3.562	0.637	1.369	1.776	nan	0.951	0.930	4.376
12486	chr6	94131756	94139379	+	0	NA	intron (NR_130996, intron 1 of 1)	intron (NR_130996, intron 1 of 1)	101875	NR_130996	78178	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	4.984	0.542	0.341	2.479	2.930	1.883	5.783	6.496	3.732	3.117	2.715	2.285	5.816	6.924	6.354	8.203	5.832	5.535	nan	nan	0.791	1.250	1.028	0.944	4.324
12066	chr6	17058718	17060618	+	0	NA	Intergenic	Intergenic	-5481	NM_207176	21753	Mm.436548	NM_011570	ENSMUSG00000029552	Tes	D6Ertd352e|TESS|Tes1|Tes2|testin2	testis derived transcript	protein-coding	4.319	nan	0.515	3.712	4.133	2.419	2.951	3.698	nan	4.050	3.842	1.752	3.734	5.864	5.151	6.231	3.749	5.370	0.607	0.585	0.311	0.563	0.283	0.166	2.777
10909	chr4	149654380	149658618	+	0	NA	promoter-TSS (NR_105990)	promoter-TSS (NR_105990)	-932	NR_105990	102465983		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	7.166	nan	4.088	7.738	8.069	6.102	7.058	7.062	5.863	9.835	5.494	5.146	6.473	10.431	8.067	7.552	6.492	7.058	6.281	2.953	3.363	7.546	11.446	12.315	9.924
9025	chr2	167512091	167518779	+	0	NA	3' UTR (NM_030743, exon 8 of 8)	3' UTR (NM_030743, exon 8 of 8)	-22561	NM_170756	263876	Mm.34342	NM_170756	ENSMUSG00000047030	Spata2	AI504642|mKIAA0757	spermatogenesis associated 2	protein-coding	9.857	5.909	1.544	11.461	6.461	4.325	7.194	9.448	5.224	13.894	7.487	3.670	6.388	8.869	7.723	9.740	6.782	9.222	nan	2.793	3.279	5.700	4.195	5.103	14.756
5779	chr16	10390097	10393352	+	0	NA	intron (NM_001291001, intron 1 of 6)	intron (NM_001291001, intron 1 of 6)	3724	NM_001099275	70426	Mm.142181	NM_001099275	ENSMUSG00000039179	Tekt5	3300001K11Rik	tektin 5	protein-coding	nan	0.739	0.795	0.735	1.036	0.337	nan	1.255	1.027	0.567	0.701	0.622	0.515	0.721	0.680	0.950	0.591	1.337	5.050	2.135	1.516	2.587	7.159	5.774	0.802
14502	chr8	97766358	97769540	+	0	NA	Intergenic	ID_B1|SINE|B4	-1221976	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	1.030	1.376	0.920	1.013	0.720	0.311	0.647	0.735	0.456	0.766	0.339	0.465	0.299	0.602	0.553	1.114	0.804	0.897	3.680	4.543	3.216	9.356	2.329	2.185	1.450
7347	chr18	67364563	67369706	+	0	NA	intron (NM_007702, intron 4 of 4)	intron (NM_007702, intron 4 of 4)	-23031	NR_033214	338360	Mm.441590	NR_033214	ENSMUSG00000046415	B430212C06Rik	-	RIKEN cDNA B430212C06 gene	ncRNA	4.902	2.528	0.893	2.892	1.617	0.820	4.042	7.297	3.769	2.776	5.039	3.316	5.632	4.129	3.900	4.072	4.020	4.371	2.459	0.940	0.886	2.041	1.187	0.783	4.128
3538	chr12	82768483	82770837	+	0	NA	intron (NM_001310478, intron 2 of 17)	intron (NM_001310478, intron 2 of 17)	152161	NM_001282061	50779	Mm.126176	NM_015812	ENSMUSG00000021219	Rgs6	-	regulator of G-protein signaling 6	protein-coding	8.341	0.882	0.308	3.226	9.344	7.975	5.016	5.309	4.942	5.947	2.782	4.001	4.726	7.678	3.775	5.541	6.151	4.450	0.941	1.010	0.835	0.673	0.773	0.443	8.992
13215	chr7	54266088	54270813	+	0	NA	Intergenic	Intergenic	-376561	NR_105746	102466619		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	3.348	2.358	1.989	2.577	4.684	3.509	2.820	4.820	2.978	2.814	2.553	2.490	3.374	4.795	2.855	2.927	2.885	3.194	2.006	1.693	1.640	0.944	1.326	1.671	3.410
9621	chr3	101996874	101999517	+	0	NA	Intergenic	L3|LINE|CR1	-11950	NM_178777	18072	Mm.137286	NM_178777	ENSMUSG00000048540	Nhlh2	6230401I09Rik|Hen2|NSCL2|Nscl-2|bHLHa34	nescient helix loop helix 2	protein-coding	1.432	1.374	0.657	1.077	0.579	0.284	2.330	1.890	0.913	1.179	7.013	2.574	0.795	1.375	2.007	nan	1.157	2.701	1.265	0.766	0.201	1.135	1.173	0.736	1.443
9962	chr4	19844744	19848292	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	27791	NM_028746	74087	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	5.604	0.862	0.659	2.692	3.972	2.504	1.152	2.478	2.680	2.902	1.182	1.740	2.168	3.329	1.887	2.632	2.092	3.421	0.632	0.867	0.819	0.384	0.375	0.302	1.853
14845	chr9	5311287	5313134	+	0	NA	intron (NM_007609, intron 1 of 8)	L1M2|LINE|L1	3361	NM_007609	12363	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	2.199	4.333	3.896	2.313	3.401	1.780	0.669	1.724	1.540	1.873	2.079	1.051	0.834	1.087	1.032	nan	nan	nan	nan	1.945	0.451	0.312	1.060	0.619	nan
3745	chr12	112919895	112921671	+	0	NA	promoter-TSS (NR_105906)	promoter-TSS (NR_105906)	-242	NR_105906	102465567		NR_105906	ENSMUSG00000098338	Mir6941	Gm27923|mmu-mir-6941	microRNA 6941	ncRNA	1.034	1.534	0.294	nan	0.402	0.158	3.197	2.884	nan	nan	0.423	0.443	3.659	3.646	3.531	1.062	0.845	1.164	0.716	0.383	0.524	0.800	0.267	0.138	1.561
7078	chr18	24253291	24254494	+	0	NA	intron (NM_001160404, intron 4 of 12)	intron (NM_001160404, intron 4 of 12)	47898	NM_001160404	14423	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	5.173	2.353	0.550	4.750	2.052	1.380	4.354	4.825	4.139	2.735	3.091	2.194	3.369	3.946	4.668	4.559	2.328	5.931	nan	1.491	0.462	1.377	0.185	0.256	4.722
997	chr1	186668034	186670698	+	0	NA	intron (NM_009367, intron 1 of 6)	intron (NM_009367, intron 1 of 6)	36623	NM_009367	21808	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	9.187	7.475	2.450	8.625	3.820	2.274	5.244	6.422	4.199	8.905	4.473	2.801	7.353	7.846	7.348	13.242	5.786	7.388	3.979	1.986	2.188	4.543	2.420	2.739	11.181
7015	chr18	10913730	10920015	+	0	NA	Intergenic	Intergenic	-131320	NR_029781	723959		NR_029781	ENSMUSG00000106348	Mir1a-2	Mir1-2|Mirn1-2|mir-1a-2|mmu-mir-1-2|mmu-mir-1a-2	microRNA 1a-2	ncRNA	2.761	0.960	1.015	1.065	1.639	0.744	3.506	4.866	1.945	2.175	0.460	0.669	4.196	4.404	3.480	4.489	3.789	3.694	0.625	0.409	0.212	0.665	0.445	0.255	2.478
11469	chr5	98319088	98320339	+	0	NA	Intergenic	MTB|LTR|ERVL-MaLR	-9591	NM_001024614	75784	Mm.443240	NM_001024614	ENSMUSG00000057816	1700007G11Rik	4930428O21Rik	RIKEN cDNA 1700007G11 gene	protein-coding	3.129	0.419	0.668	0.973	0.771	0.917	1.734	2.830	1.280	1.339	0.480	0.701	2.503	3.497	1.930	0.811	2.816	0.945	0.418	1.000	0.519	0.136	0.252	0.523	1.446
6840	chr17	72040056	72041558	+	0	NA	intron (NM_007439, intron 5 of 28)	B4|SINE|B4	258860	NM_030179	78785	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	3.730	1.001	0.649	3.402	4.483	1.256	2.349	1.173	nan	3.645	2.110	0.944	3.476	4.553	2.894	3.836	2.336	3.551	2.468	1.251	0.326	1.376	0.992	0.708	4.484
14393	chr8	85722479	85729973	+	0	NA	exon (NM_028007, exon 15 of 18)	exon (NM_028007, exon 15 of 18)	25321	NR_106189	102465898		NR_106189	ENSMUSG00000098388	Mir8109	Gm27495|mmu-mir-8109	microRNA 8109	ncRNA	0.754	2.015	0.950	1.020	0.294	0.200	0.323	0.771	nan	0.451	0.324	0.335	0.546	0.493	0.609	0.906	0.807	0.904	5.418	2.411	2.091	6.120	3.651	2.678	0.908
11040	chr5	17865313	17866627	+	0	NA	intron (NM_001159558, intron 1 of 15)	intron (NM_001159558, intron 1 of 15)	-16178	NM_001159556	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	2.348	1.175		5.681	1.405	1.104	4.268	3.096	1.243	4.405	0.839	0.639	3.566	3.842	6.831	3.315	2.308	5.220	0.809	0.259	0.465	1.424	0.469	0.601	5.999
3394	chr12	71099114	71100328	+	0	NA	TTS (NM_001081195)	TTS (NM_001081195)	-11707	NM_029227	75266	Mm.402075	NM_029227	ENSMUSG00000021078	Tomm20l	4930553D19Rik	translocase of outer mitochondrial membrane 20 homolog (yeast)-like	protein-coding	4.532	0.887	0.641	1.768	2.169	0.667	5.435	2.372	3.278	2.102	8.340	3.700	3.594	3.911	2.791	2.545	3.736	2.800	0.595	1.125	0.202	0.491	0.640	0.453	2.006
13801	chr7	137171557	137173675	+	0	NA	Intergenic	Intergenic	-62067	NR_045885	100038555	Mm.444788	NR_045885	ENSMUSG00000109722	Gm10578	ENSMUSG00000073800	predicted gene 10578	ncRNA	3.284	nan	0.217	2.672	4.344	3.402	6.511	5.816	6.160	4.463	1.268	0.638	7.888	5.489	5.724	5.841	5.341	5.618	2.036	2.221	2.822	1.524	2.819	2.473	3.494
10715	chr4	135584021	135588338	+	0	NA	Intergenic	Intergenic	-12559	NM_001013756	230824	Mm.331972	NM_001013756	ENSMUSG00000037188	Grhl3	AI561912|Get1|Som|Tfcp2l4|ct	grainyhead-like 3 (Drosophila)	protein-coding	4.042	5.699	2.298	4.045	4.053	3.182	4.076	4.688	nan	3.193	3.553	1.781	2.436	4.137	3.439	3.433	2.929	3.071	3.997	4.134	4.624	7.425	nan	5.512	3.117
608	chr1	133639929	133662709	+	0	NA	intron (NM_001276767, intron 3 of 17)	(T)n|Simple_repeat|Simple_repeat	9566	NM_001166552	667118	Mm.245357	NM_001166552	ENSMUSG00000094410	Zbed6	Gm8466|MGR	zinc finger, BED type containing 6	protein-coding	9.703	1.661	0.701	nan	4.404	1.934	11.948	6.342	5.061	7.595	1.622	1.346	10.379	10.637	10.323	nan	8.321	7.837	1.007	0.835	0.600	0.928	1.790	1.165	13.152
1649	chr10	95158260	95159590	+	0	NA	Intergenic	B1_Mur4|SINE|Alu	-13100	NR_131146	628062		NR_131146		Gm29684	-	predicted gene, 29684	ncRNA	2.569	0.915	0.280	1.955	1.909	0.965	3.193	3.132	2.135	2.546	nan	1.017	3.096	3.898	2.475	3.413	2.606	1.812	nan	0.315	0.431	nan	0.474	0.347	2.634
13354	chr7	86975735	86978004	+	0	NA	Intergenic	RMER17D|LTR|ERVK	-19596	NM_001105190	621430	Mm.469903	NM_001105190	ENSMUSG00000090362	Vmn2r79	EG621430	vomeronasal 2, receptor 79	protein-coding	5.373	0.899	0.441	5.788	4.774	2.569	3.641	4.850	5.719	8.027	2.116	1.524	7.203	10.587	5.880	nan	7.965	6.109	1.924	2.500	1.544	nan	2.042	1.396	10.394
5731	chr15	102401189	102404362	+	0	NA	Intergenic	Intergenic	-3541	NM_013672	20683	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	5.869	0.680	0.433	2.864	4.362	3.659	9.016	9.664	5.165	4.440	4.455	4.881	10.887	7.397	6.060	4.818	7.170	6.245	1.943	1.096	0.766	0.870	1.751	1.998	2.669
7994	chr2	20466027	20472001	+	0	NA	intron (NM_001081006, intron 2 of 21)	B1_Mus1|SINE|Alu	-41033	NM_029895	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	6.479	1.598	1.144	3.579	2.868	1.882	6.976	6.340	5.985	4.923	5.118	3.110	8.377	6.800	6.046	8.793	7.713	6.743	2.428	2.665	1.888	1.752	2.035	1.646	6.865
12267	chr6	56863114	56864609	+	0	NA	intron (NM_012056, intron 6 of 9)	B1_Mus2|SINE|Alu	31802	NM_012056	27055	Mm.20943	NM_012056	ENSMUSG00000029781	Fkbp9	1810014L23|AW549641|FKBP-63|FKBP-9|FKBP60|FKBP63|FKBP65RS	FK506 binding protein 9	protein-coding	3.171	1.891	1.020	1.649	0.761	0.556	4.099	5.217	2.360	1.509	2.177	1.790	4.588	4.134	2.414	3.006	2.279	2.773	nan	1.230	1.028	2.758	0.884	0.491	0.933
6036	chr16	34347307	34348520	+	0	NA	intron (NM_001164268, intron 5 of 33)	intron (NM_001164268, intron 5 of 33)	166114	NM_001164268	545156	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	3.800	0.936	0.109	3.971	2.792	1.097	2.558	5.499	1.470	2.012	0.761	0.328	3.690	4.125	2.105	2.011	1.363	2.764	1.005	0.531	0.500	0.902	0.764	0.240	1.960
2226	chr11	55027126	55028422	+	0	NA	intron (NR_138556, intron 1 of 24)	LTR37A|LTR|ERV1	5697	NR_138556	11749	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	3.256	2.119	0.443	2.442	1.334	0.714	0.835	2.805	1.438	2.354	0.582	0.376	1.145	3.623	3.041	3.703	1.752	2.357	nan	0.638	0.284	1.860	0.854	0.492	4.382
2878	chr11	105765748	105766923	+	0	NA	intron (NM_181071, intron 4 of 25)	intron (NM_181071, intron 4 of 25)	176349	NM_181071	77097	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	4.164	0.843	1.966	2.168	5.540	3.441	1.705	3.929	2.056	2.653	1.758	1.047	1.646	3.830	0.867	1.470	2.088	2.380	3.645	7.003	4.901	nan	6.075	4.325	0.933
4535	chr14	25343754	25345877	+	0	NA	Intergenic	L1Md_F3|LINE|L1	-114370	NM_001310666	328365	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|ENSMUSG00000072684|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.348	0.408	0.305	0.374	0.087	0.059	0.489	1.447	0.628	0.444	0.585	1.167	0.256	0.442	0.452	nan	nan	nan	9.135	4.956	4.105	7.668	7.942	6.357	0.577
13710	chr7	128979566	128981966	+	0	NA	Intergenic	Intergenic	235896	NM_001029982	207352	Mm.297105	NM_001029982	ENSMUSG00000055319	Sec23ip	D7Ertd373e|p125	Sec23 interacting protein	protein-coding	5.065	0.652	0.197	5.199	5.401	3.856	3.719	3.407	3.354	6.498	1.818	0.878	5.462	7.981	3.083	4.593	3.947	6.945	1.607	1.184	0.796	1.834	1.928	1.115	5.832
11778	chr5	135104245	135130818	+	0	NA	intron (NM_021455, intron 2 of 16)	intron (NM_021455, intron 2 of 16)	10640	NM_021455	58805	Mm.34213	NM_021455	ENSMUSG00000005373	Mlxipl	ChREBP|Mlx|WS-bHLH|Wbscr14|bHLHd14	MLX interacting protein-like	protein-coding	4.627	2.156	1.357	4.762	7.424	5.776	3.801	5.186	6.014	8.796	1.994	1.904	4.321	7.320	4.816	4.425	4.094	5.674	1.663	1.447	1.834	1.522	nan	1.857	4.497
9065	chr2	170144113	170150480	+	0	NA	Intergenic	Intergenic	-4621	NM_001159683	228913	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	6.440	5.539	3.605	2.926	3.641	2.803	5.391	4.559	2.980	3.428	2.344	2.874	5.459	nan	3.889	5.510	4.769	nan	nan	2.556	2.347	1.748	1.923	2.157	nan
1474	chr10	79376306	79382338	+	0	NA	exon (NM_001101572, exon 3 of 6)	exon (NM_001101572, exon 3 of 6)	22731	NM_001101572	624845	Mm.469866	NM_001101572	ENSMUSG00000091468	Vmn2r82	EG624845	vomeronasal 2, receptor 82	protein-coding	7.936	3.926	1.505	6.979	5.083	2.910	6.393	8.118	4.036	7.297	4.904	3.198	5.205	9.472	6.776	8.262	6.209	7.039	3.344	2.374	2.079	3.935	3.112	2.695	11.427
13080	chr7	30196400	30198381	+	0	NA	Intergenic	Intergenic	-2342	NM_009795	12336	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|D7Ertd146e	calpain, small subunit 1	protein-coding	4.759	0.661	0.266	4.910	3.261	1.546	9.123	9.175	5.565	8.439	1.150	2.466	6.686	7.502	7.744	8.892	4.853	7.345	7.475	5.841	4.882	9.440	8.851	6.391	8.081
13058	chr7	29155964	29169843	+	0	NA	exon (NM_182927, exon 5 of 6)	exon (NM_182927, exon 5 of 6)	5744	NM_182927	101809	Mm.377262	NM_182927	ENSMUSG00000037239	Spred3	AW047143|D130060H24Rik|Spred-3	sprouty-related, EVH1 domain containing 3	protein-coding	13.778	18.802	7.487	15.255	10.654	6.664	13.534	15.801	8.903	13.011	9.509	4.751	13.105	18.312	12.538	13.408	10.763	12.827	5.004	4.779	4.113	6.180	5.285	4.423	16.104
11286	chr5	65932135	65936363	+	0	NA	Intergenic	Intergenic	-32875	NM_001081104	231252	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	1.289	1.666	1.725	1.712	2.223	3.222	1.431	1.754	1.933	1.469	1.236	1.251	1.271	1.491	1.364	1.282	1.701	1.613	1.455	1.132	1.820	nan	1.972	2.389	0.784
125	chr1	39448859	39458223	+	0	NA	intron (NM_018775, intron 1 of 19)	intron (NM_018775, intron 1 of 19)	25206	NM_018775	54610	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	6.081	1.437	0.577	4.413	4.426	3.167	5.819	3.296	4.586	7.049	2.067	1.381	5.812	6.667	5.106	9.776	4.640	6.705	1.179	0.822	0.943	1.293	0.948	0.865	6.698
44	chr1	20835705	20838375	+	0	NA	Intergenic	RMER17C|LTR|ERVK	-16827	NM_008563	17215	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|p1.m	minichromosome maintenance complex component 3	protein-coding	7.080	0.435	0.436	2.863	3.006	1.863	6.679	3.127	4.363	3.963	2.303	2.041	8.789	6.075	6.372	10.287	7.116	4.842	1.118	0.655	0.403	0.661	0.639	0.673	5.048
5967	chr16	29812350	29817688	+	0	NA	Intergenic	Intergenic	164105	NR_037689	328657	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	5.651	1.632	0.424	4.551	1.705	0.811	7.042	9.091	4.233	5.623	6.982	3.748	8.033	6.607	9.460	10.792	4.608	7.866	2.296	0.948	0.611	3.879	nan	0.999	10.237
2152	chr11	50087198	50090716	+	0	NA	intron (NM_001290750, intron 5 of 7)	intron (NM_001290750, intron 5 of 7)	19255	NR_029769	723845		NR_029769	ENSMUSG00000065417	Mir340	Mirn340|mir-340|mmu-mir-340	microRNA 340	ncRNA	4.408	1.249	0.980	2.970	6.085	4.344	5.349	4.736	3.045	2.721	3.823	2.288	3.618	4.449	3.549	4.967	4.511	3.504	nan	2.516	2.351	nan	nan	1.447	3.112
7258	chr18	56625369	56632962	+	0	NA	Intergenic	Intergenic	40817	NM_026099	67343	Mm.87057	NM_026099	ENSMUSG00000032900	Tex43	1700065I17Rik|Tseg7	testis expressed 43	protein-coding	nan	12.374	6.693	nan	0.956	0.438	0.884	nan	1.114	0.988	0.744	1.471	nan	0.669	1.326	1.074	1.269	nan	nan	6.097	4.549	7.513	5.038	3.802	nan
12853	chr6	146154759	146160759	+	0	NA	intron (NM_010586, intron 52 of 55)	ORR1E|LTR|ERVL-MaLR	223612	NM_010656	16651	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	2.848	10.058	6.684	nan	1.137	0.478	0.817	nan	1.322	nan	0.815	0.602	nan	1.246	1.153	nan	0.995	1.213	0.744	nan	1.149	nan	0.644	0.487	nan
5312	chr15	73558992	73567176	+	0	NA	intron (NM_001081066, intron 17 of 22)	intron (NM_001081066, intron 17 of 22)	33442	NM_001168255	106068	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	nan	12.142	3.927	5.656	1.861	1.054	nan	4.738	2.243	nan	nan	0.931	2.916	3.398	3.608	3.639	nan	3.819	5.233	2.443	1.803	6.923	2.918	2.461	5.601
12937	chr7	16947491	16959137	+	0	NA	Intergenic	ZP3AR|Satellite|Satellite	-6481	NM_001007569	71691	Mm.275673	NM_001007569	ENSMUSG00000041141	Pnmal1	0710005I19Rik	PNMA-like 1	protein-coding	5.661	4.063	1.764	5.651	4.648	3.247	7.078	8.298	6.076	6.744	5.002	3.204	9.392	9.850	8.051	6.918	6.197	7.749	2.253	1.455	1.512	1.689	1.581	1.495	5.978
7207	chr18	42245596	42253860	+	0	NA	intron (NM_134137, intron 4 of 31)	intron (NM_134137, intron 4 of 31)	12343	NM_134137	107045	Mm.312170	NM_134137	ENSMUSG00000024493	Lars	2310045K21Rik|3110009L02Rik|AW536573|mKIAA1352	leucyl-tRNA synthetase	protein-coding	0.935	0.571	0.316	1.085	0.669	0.418	0.544	0.656	0.860	0.622	0.621	0.356	0.352	nan	0.585	nan	0.563	1.434	1.852	2.144	1.439	4.932	1.547	1.058	1.006
5016	chr15	6590238	6601243	+	0	NA	intron (NM_011815, intron 1 of 17)	intron (NM_011815, intron 1 of 17)	15893	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	7.932	0.719	0.636	3.043	8.419	5.628	11.599	14.071	5.968	7.251	1.036	0.926	12.120	10.393	8.070	5.881	9.043	7.454	0.764	0.902	0.568	0.323	0.825	0.828	3.631
2008	chr11	20295449	20296982	+	0	NA	Intergenic	Intergenic	36498	NM_018861	55963	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	2.492	nan	0.086	2.316	1.126	0.279	4.131	4.286	2.359	2.588	0.851	1.164	3.751	4.148	2.884	3.959	3.074	3.086	6.730	3.027	1.856	7.122	4.951	3.849	3.540
15105	chr9	56770395	56777128	+	0	NA	Intergenic	Intergenic	78202	NM_198673	382075	Mm.335177	NM_198673	ENSMUSG00000045620	Odf3l1	BC049697|Gm1116	outer dense fiber of sperm tails 3-like 1	protein-coding	8.009	4.539	1.659	8.715	3.752	2.136	7.467	8.993	5.461	7.347	6.227	4.452	6.725	8.967	9.480	9.817	4.885	8.624	7.956	4.386	3.124	7.622	5.278	3.918	15.301
10572	chr4	129469857	129475160	+	0	NA	intron (NM_133889, intron 7 of 10)	intron (NM_133889, intron 7 of 10)	10829	NM_133889	100383	Mm.17918	NM_133889	ENSMUSG00000040859	Bsdc1	1110063F24Rik|AW011758	BSD domain containing 1	protein-coding	7.063	3.841	2.157	6.829	9.902	7.098	8.143	5.526	4.805	5.658	4.125	2.671	5.549	8.462	nan	6.808	4.226	6.479	1.422	2.231	1.872	1.821	1.334	1.091	8.181
2862	chr11	104301881	104304787	+	0	NA	intron (NM_001038609, intron 6 of 11)	intron (NM_001038609, intron 6 of 11)	71898	NM_001285454	17762	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	12.510	16.762	5.928	13.433	5.758	3.945	8.920	9.394	8.077	18.045	8.353	5.636	9.304	12.128	9.625	11.824	8.118	11.595	7.769	4.277	4.056	8.190	4.687	5.172	14.280
9418	chr3	85828080	85829701	+	0	NA	Intergenic	Intergenic	58628	NM_177130	320302	Mm.482978	NM_177130	ENSMUSG00000031286	Glt28d2	4732486J07Rik|Glt28d1l	glycosyltransferase 28 domain containing 2	protein-coding	2.297	0.611	1.169	1.635	2.222	1.525	2.933	1.057	1.577	3.134	1.089	0.438	2.622	4.560	2.794	3.125	2.648	2.954	nan	0.802	0.515	0.741	1.411	1.049	2.366
1564	chr10	86287274	86292076	+	0	NA	intron (NM_013722, intron 6 of 13)	intron (NM_013722, intron 6 of 13)	-10737	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	nan	1.366	0.879	2.945	4.017	2.076	3.074	3.331	2.162	3.724	0.944	1.297	3.553	4.709	2.567	4.185	4.020	4.083	0.968	0.679	0.204	nan	nan	0.432	8.358
6504	chr17	29496828	29498692	+	0	NA	Intergenic	(TTTC)n|Simple_repeat|Simple_repeat	6715	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	2.535	6.443	2.693	3.350	1.287	0.654	3.592	3.633	2.193	2.810	0.946	0.845	2.966	5.051	4.180	3.815	2.535	4.610	0.929	0.911	0.415	1.310	0.950	0.634	4.884
6935	chr17	86897968	86901150	+	0	NA	Intergenic	L2|LINE|L2	-17789	NM_001277980	78469	Mm.67234	NM_030104	ENSMUSG00000037689	Tmem247	1700090G07Rik	transmembrane protein 247	protein-coding	3.958	2.174	1.018	6.117	1.696	0.683	2.401	1.880	nan	3.041	1.566	1.241	2.801	2.886	3.503	3.661	2.002	4.495	0.745	1.214	0.551	1.106	0.447	0.661	3.183
11048	chr5	20708654	20710720	+	0	NA	Intergenic	L1_Mus1|LINE|L1	172437	NM_172992	68770	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	5.138	5.196	3.097	4.294	5.074	2.967	3.175	2.114	5.501	5.963	2.421	1.603	3.799	7.011	5.286	6.647	4.662	5.942	1.278	1.852	0.905	1.026	1.563	1.506	4.906
2663	chr11	94733691	94736489	+	0	NA	Intergenic	Intergenic	26092	NM_001105561	217122	Mm.24063	NM_183153		Gm11545	A430060F13Rik|C86086|OTTMUSG00000002043	predicted gene 11545	protein-coding	1.767	nan	0.396	2.324	1.816	1.498	2.083	2.178	1.693	2.875	0.796	0.835	2.680	5.268	1.806	3.537	nan	1.955	2.212	nan	1.347	2.149	nan	nan	2.914
15054	chr9	48535166	48550052	+	0	NA	Intergenic	RLTR17C_Mm|LTR|ERVK	47266	NM_001004191	434402	Mm.386950	NM_001004191	ENSMUSG00000042293	Gm5617	EG434402	predicted gene 5617	protein-coding	6.175	3.996	2.139	9.084	5.324	2.713	1.332	4.907	4.298	6.522	2.487	1.035	2.195	6.862	nan	nan	1.679	7.154	1.180	2.209	1.469	nan	1.886	1.205	nan
15808	chrX	132777393	132784237	+	0	NA	Intergenic	Lx2|LINE|L1	908178	NM_001105245	279653	Mm.39738	NM_001105245	ENSMUSG00000051323	Pcdh19	B530002L05Rik|Gm717|mKIAA1313	protocadherin 19	protein-coding	4.173	1.351	0.683	2.189	1.118	0.471	2.861	3.413	2.586	2.966	1.262	0.716	4.589	3.474	3.314	3.580	2.901	4.275	1.928	1.048	0.342	1.586	1.035	0.798	3.593
9754	chr3	121521701	121525668	+	0	NA	intron (NM_145394, intron 5 of 14)	B2_Mm2|SINE|B2	8660	NM_145394	213603	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	2.683	0.711	0.415	1.636	2.268	0.924	4.875	5.864	4.158	2.759	2.221	4.506	5.070	4.582	3.518	4.180	4.082	4.289	0.821	1.044	0.550	1.520	nan	1.268	2.952
13765	chr7	134349972	134353438	+	0	NA	intron (NM_001081331, intron 1 of 7)	intron (NM_001081331, intron 1 of 7)	13179	NM_001199941	71007	Mm.334285	NM_001081331	ENSMUSG00000030994	D7Ertd443e	4933400E14Rik|FATS|Gm497	DNA segment, Chr 7, ERATO Doi 443, expressed	protein-coding	6.590	11.741	4.234	7.565	3.343	2.691	4.339	6.745	nan	7.225	4.124	2.733	4.890	6.053	5.797	7.265	4.423	6.546	4.745	3.320	2.704	5.248	3.525	4.043	10.636
8759	chr2	146379693	146382575	+	0	NA	intron (NM_001033348, intron 24 of 40)	(A)n|Simple_repeat|Simple_repeat	121848	NR_040619	77806	Mm.392819	NR_040619	ENSMUSG00000085958	A930019D19Rik	-	RIKEN cDNA A930019D19 gene	ncRNA	4.148	0.626	0.634	4.551	2.053	0.824	4.171	9.438	4.332	5.400	1.388	1.600	8.441	6.317	3.932	7.004	6.944	6.444	3.171	1.711	0.569	2.202	2.125	1.392	3.178
13580	chr7	117364847	117370575	+	0	NA	Intergenic	MTEb|LTR|ERVL-MaLR	-13268	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	3.999	12.119	7.517	5.400	2.709	2.217	2.477	3.202	3.663	4.801	3.487	3.246	3.169	nan	4.193	3.994	3.171	4.912	1.138	1.619	1.559	1.196	0.774	1.001	4.639
10522	chr4	125882306	125884455	+	0	NA	Intergenic	ID_B1|SINE|B4	38930	NR_015560	72395	Mm.112888	NR_015560	ENSMUSG00000085562	2610028E06Rik	BB043107	RIKEN cDNA 2610028E06 gene	ncRNA	2.234	2.237	2.559	1.947	3.159	2.677	3.757	3.363	2.469	2.115	0.857	0.978	2.555	3.860	2.901	2.890	2.403	2.296	1.114	1.722	1.792	0.956	1.373	1.054	2.329
15717	chrX	45281809	45284386	+	0	NA	Intergenic	Intergenic	192193	NM_026841	68800	Mm.336041	NM_026841	ENSMUSG00000037086	Prr32	1110059M19Rik	proline rich 32	protein-coding	1.989	0.221	0.154	1.332	0.828	0.685	2.504	1.482	2.306	1.959	0.644	0.602	2.503	2.386	2.520	3.173	1.952	2.892	0.535	0.337	0.161	0.381	0.124	0.195	2.389
8935	chr2	163101356	163106139	+	0	NA	Intergenic	Intergenic	-14146	NM_026630	68236	Mm.33648	NM_026630	ENSMUSG00000070708	Gtsf1l	2410116G06Rik	gametocyte specific factor 1-like	protein-coding	0.479	9.571	4.328	0.444	0.298	0.180	0.284	0.303	0.274	0.274	0.245	0.212	0.116	nan	0.239	0.480	0.334	nan	nan	0.375	0.359	0.564	0.363	0.219	nan
4690	chr14	55954535	55956588	+	0	NA	Intergenic	Intergenic	-3190	NR_028284	17223	Mm.437339	NR_028284		Mcpt-ps1	MMCP-(Y)1|Mmcpy1	mast cell protease, pseudogene 1	pseudo	0.999	nan	0.847	0.637	0.338	0.176	0.324	nan	0.541	0.437	0.508	0.215	0.122	0.254	0.284	0.472	0.492	0.895	5.000	3.937	4.367	6.557	3.702	3.508	0.627
7428	chr18	82644112	82646764	+	0	NA	intron (NM_177832, intron 9 of 29)	L1_Mus1|LINE|L1	47296	NM_177832	329002	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	8.497	11.614	3.430	7.438	3.000	1.852	6.322	10.856	4.207	6.484	5.250	3.034	7.111	8.086	7.554	9.547	4.463	8.688	6.499	nan	3.643	7.435	5.526	4.698	14.869
397	chr1	88476215	88477155	+	0	NA	Intergenic	Intergenic	33381	NM_008132	14659	Mm.5187	NM_008132	ENSMUSG00000062310	Glrp1	GRP-1	glutamine repeat protein 1	protein-coding	5.712	0.821	1.306	1.805	4.479	3.109	4.567	0.834	2.404	2.231	0.963	1.065	3.023	3.706	2.418	2.957	2.648	3.156	1.074	1.116	1.882	nan	0.820	1.160	4.150
12810	chr6	136886774	136890621	+	0	NA	Intergenic	Intergenic	-12874	NM_008597	17313	Mm.243085	NM_008597	ENSMUSG00000030218	Mgp	Mglap	matrix Gla protein	protein-coding	5.582	18.180	8.299	3.520	2.412	0.962	1.851	3.117	2.382	3.565	2.634	1.865	2.305	3.349	nan	2.460	2.188	2.698	nan	2.317	1.481	1.025	0.390	0.446	nan
15546	chr9	115778909	115780478	+	0	NA	Intergenic	Intergenic	-129762	NM_028638	73748	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	0.304	0.579	0.092	0.252	0.285	0.080	0.157	0.414	0.525	0.421	0.579	0.365	0.221	0.235	0.247	0.519	0.351	0.550	3.531	2.385	3.558	3.628	4.570	3.424	0.560
9379	chr3	68929245	68932317	+	0	NA	intron (NM_026641, intron 12 of 19)	intron (NM_026641, intron 12 of 19)	61195	NM_001167996	68725	Mm.45741	NM_001167996	ENSMUSG00000046999	1110032F04Rik	AI115547	RIKEN cDNA 1110032F04 gene	protein-coding	8.676	11.139	3.439	10.355	6.728	4.275	8.626	6.531	4.974	12.511	6.981	4.512	7.571	9.441	8.718	8.900	7.696	8.347	6.060	3.471	3.542	5.684	4.126	4.802	11.529
1096	chr10	11810812	11812627	+	0	NA	Intergenic	Intergenic	202495	NM_013898	30058	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	4.714	0.365	0.450	2.676	0.884	0.612	3.145	3.230	4.327	3.812	2.365	2.223	4.204	5.042	4.538	3.133	3.022	3.173	1.873	0.400	0.226	1.520	1.094	0.428	3.474
5368	chr15	76733705	76736345	+	0	NA	exon (NM_001168288, exon 6 of 12)	exon (NM_001168288, exon 6 of 12)	-11180	NM_176828	223665	Mm.291713	NM_145472	ENSMUSG00000033707	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	7.872	10.778	2.593	nan	4.167	2.010	9.676	11.392	3.878	nan	nan	2.692	7.995	8.196	8.639	7.798	7.648	6.587	3.558	2.536	1.441	5.231	2.604	2.110	11.530
14872	chr9	15104372	15106645	+	0	NA	intron (NM_001164797, intron 1 of 19)	intron (NM_001164797, intron 1 of 19)	6600	NM_001164797	244698	Mm.325134	NM_001164797	ENSMUSG00000031936	Hephl1	Gm509|Zp|zyklopen	hephaestin-like 1	protein-coding	6.997	1.368	1.121	5.783	6.548	6.438	6.727	7.594	7.050	6.588	2.549	3.306	6.652	7.399	4.980	6.466	6.608	5.289	1.499	2.422	2.712	1.239	1.833	2.024	6.207
2934	chr11	109202522	109212977	+	0	NA	Intergenic	B3|SINE|B2	-63380	NR_037978	268498	Mm.227970	NM_001085512	ENSMUSG00000078605	E030025P04Rik	Gm664	RIKEN cDNA E030025P04 gene	ncRNA	4.425	2.014	0.949	nan	3.822	2.084	5.082	5.583	nan	nan	1.682	2.325	4.226	nan	4.445	5.179	2.934	nan	1.313	1.154	0.786	nan	1.333	0.901	3.139
6088	chr16	45355973	45358170	+	0	NA	Intergenic	Intergenic	51982	NM_010818	17470	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	4.798	2.129	0.729	3.928	1.934	1.170	4.006	3.287	2.921	2.283	3.111	1.100	4.314	2.864	3.358	4.166	2.386	4.778	1.345	0.960	0.498	1.147	0.676	0.501	4.161
14738	chr8	125288244	125297373	+	0	NA	Intergenic	Intergenic	199902	NM_001081337	244668	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	0.522	nan	0.437	nan	0.329	0.134	nan	nan	0.408	0.343	0.229	0.211	0.181	0.281	nan	0.708	0.255	nan	4.876	3.857	2.673	7.288	4.123	nan	nan
10827	chr4	141323908	141328863	+	0	NA	intron (NM_010139, intron 16 of 16)	intron (NM_010139, intron 16 of 16)	25164	NM_010139	13836	Mm.2581	NM_010139	ENSMUSG00000006445	Epha2	AW545284|Eck|Myk2|Sek-2|Sek2	Eph receptor A2	protein-coding	nan	1.197	0.663	1.345	0.544	0.316	0.416	1.200	nan	0.732	0.784	0.560	0.781	0.624	0.832	0.933	0.739	1.137	7.479	5.276	3.799	10.682	nan	6.125	0.901
8430	chr2	90893593	90894507	+	0	NA	TTS (NM_026688)	TTS (NM_026688)	8264	NM_026161	67445	Mm.258993	NM_026161	ENSMUSG00000040794	C1qtnf4	0710001E10Rik|9430004J15Rik|CTRP4	C1q and tumor necrosis factor related protein 4	protein-coding	10.759	10.935	2.926	10.742	4.536	2.297	8.101	7.972	6.838	10.023	6.898	4.377	8.135	7.573	8.920	9.741	7.835	8.012	4.312	3.091	4.686	5.335	3.934	5.291	14.465
5757	chr16	4875834	4882158	+	0	NA	intron (NM_145359, intron 1 of 2)	intron (NM_145359, intron 1 of 2)	855	NM_145359	207740	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	11.579	11.086	4.669	9.162	6.382	4.424	10.493	12.296	6.098	8.686	7.773	4.053	9.874	12.030	10.890	12.288	8.329	9.823	4.377	3.713	3.607	5.923	4.025	4.027	15.540
13130	chr7	35811262	35812842	+	0	NA	intron (NR_033567, intron 1 of 2)	PB1D11|SINE|Alu	-9063	NM_177739	668501	Mm.286296	NM_177739	ENSMUSG00000044452	Zfp507	1810022O10Rik|A230056M16Rik|AL024009|AU021817|BB105092|Gm480|Znf507|mKIAA1084	zinc finger protein 507	protein-coding	4.117	2.276	0.413	3.129	0.967	0.471	3.112	4.611	2.132	2.876	0.513	0.702	3.869	3.612	3.633	3.895	2.517	3.574	0.884	0.229	0.363	0.880	0.450	0.394	5.827
2185	chr11	53090435	53093235	+	0	NA	intron (NM_177059, intron 6 of 15)	intron (NM_177059, intron 6 of 15)	28221	NR_046047	790909	Mm.404626	NR_046047	ENSMUSG00000087668	Gm11186	OTTMUSG00000000039	predicted gene 11186	ncRNA	4.829	1.244	0.921	3.275	5.957	4.898	2.050	1.531	3.959	4.639	1.382	1.728	2.317	4.400	1.502	1.815	1.802	4.131	nan	1.871	1.722	1.016	1.385	0.986	1.701
4432	chr13	114389376	114394919	+	0	NA	Intergenic	Intergenic	-4053	NM_010887	17993	Mm.253142	NM_010887	ENSMUSG00000021764	Ndufs4	6720411N02Rik|C1-18k	NADH dehydrogenase (ubiquinone) Fe-S protein 4	protein-coding	4.506	5.396	2.328	5.511	8.050	4.655	4.612	5.750	2.501	2.852	1.913	1.235	6.004	8.988	6.416	3.575	2.020	5.265	1.154	0.943	0.789	1.564	1.377	1.119	5.155
10918	chr4	149939059	149951814	+	0	NA	intron (NM_029035, intron 1 of 2)	intron (NM_029035, intron 1 of 2)	9570	NM_029035	74646	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	4.967	nan	6.185	5.667	3.641	2.063	5.231	5.589	4.881	6.545	3.619	2.829	5.391	6.902	5.760	6.160	3.787	5.454	4.928	1.864	1.845	5.419	2.391	2.113	6.552
1191	chr10	24915888	24920893	+	0	NA	intron (NM_007482, intron 3 of 7)	intron (NM_007482, intron 3 of 7)	7726	NR_105870	102465545		NR_105870	ENSMUSG00000099181	Mir6905	Gm27879|mmu-mir-6905	microRNA 6905	ncRNA	5.507	0.943	0.421	3.715	2.327	1.132	2.765	3.877	3.520	5.056	0.583	0.832	5.455	4.466	4.560	6.820	5.419	4.162	0.743	1.073	0.563	1.168	0.928	0.456	8.625
8384	chr2	76427812	76430526	+	0	NA	intron (NM_001290733, intron 1 of 26)	intron (NM_001290733, intron 1 of 26)	22661	NM_001290733	99031	Mm.240435	NM_145525	ENSMUSG00000042359	Osbpl6	1110062M20Rik|AI596402|ORP-6|mKIAA4128	oxysterol binding protein-like 6	protein-coding	6.238	0.544	0.473	nan	1.554	0.971	4.259	2.768	4.718	3.956	1.784	1.020	5.947	5.885	3.967	5.495	5.731	5.958	0.630	0.617	0.489	0.753	0.317	0.230	5.597
823	chr1	164893475	164895433	+	0	NA	Intergenic	Intergenic	31333	NR_040303	433374	Mm.251149	NR_040303	ENSMUSG00000104117	Gm20743	-	predicted gene, 20743	ncRNA	1.355	0.415	0.486	3.288	0.575	0.584	0.658	2.008	nan	1.015	1.231	0.968	nan	0.886	nan	1.209	0.910	1.457	0.619	0.438	0.212	nan	nan	0.538	nan
5722	chr15	102155770	102157917	+	0	NA	exon (NM_146064, exon 6 of 15)	exon (NM_146064, exon 6 of 15)	6268	NM_146064	223920	Mm.358862	NM_146064	ENSMUSG00000023045	Soat2	ACAT2|D15Wsu97e	sterol O-acyltransferase 2	protein-coding	5.873	5.734	1.455	5.645	1.672	0.623	5.226	6.204	3.658	3.938	2.413	1.644	6.753	5.358	7.138	nan	3.681	6.906	3.346	1.230	0.998	3.252	1.181	1.133	7.564
9288	chr3	51814573	51816507	+	0	NA	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	154361	NM_001310482	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	2.941	0.777	0.455	3.044	3.061	1.852	3.105	4.123	2.561	2.759	1.440	1.222	3.040	2.999	3.186	4.280	2.261	3.279	1.670	1.227	1.142	2.532	1.328	0.855	3.415
6264	chr16	96069027	96072026	+	0	NA	intron (NM_001103179, intron 4 of 40)	B1F2|SINE|Alu	11902	NM_001103179	93871	Mm.240871	NM_145125	ENSMUSG00000022914	Brwd1	5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5	bromodomain and WD repeat domain containing 1	protein-coding	4.523	0.984	0.777	4.882	2.914	1.468	4.015	3.105	nan	6.176	1.138	0.468	6.071	7.013	5.545	8.320	4.685	5.951	2.407	1.851	1.325	2.654	2.146	1.924	5.925
6360	chr17	15944479	15954993	+	0	NA	Intergenic	MIRc|SINE|MIR	-123150	NM_178615	68799	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	nan	2.262	1.066	4.025	2.634	1.235	4.006	4.402	4.013	3.483	3.031	1.542	3.814	5.623	4.848	7.013	4.865	5.127	0.588	0.876	0.626	1.044	0.386	0.208	6.511
9886	chr3	153421465	153424171	+	0	NA	intron (NM_011372, intron 2 of 4)	intron (NM_011372, intron 2 of 4)	-124169	NR_126464	75489	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	4.699	0.541	0.751	0.965	1.579	0.688	2.491	2.499	1.498	2.486	0.248	0.397	3.822	3.498	2.263	3.265	5.242	2.159	0.434	0.344	0.362	0.358	0.128	0.123	6.679
14595	chr8	112107948	112113773	+	0	NA	Intergenic	B4A|SINE|B4	99501	NM_020584	57321	Mm.213064	NM_020584	ENSMUSG00000033430	Terf2ip	Rap1	telomeric repeat binding factor 2, interacting protein	protein-coding	5.975	0.931	0.413	3.803	3.938	3.127	5.832	6.510	4.103	5.108	2.548	1.415	8.500	8.212	5.823	9.163	6.102	6.005	0.888	0.924	1.291	nan	0.916	0.937	7.940
4666	chr14	52898329	52900135	+	0	NA	Intergenic	Intergenic	-403537	NM_001170918	57269	Mm.88822	NM_020512	ENSMUSG00000059887	Olfr1507	MOR244-1|Mor28|Or28	olfactory receptor 1507	protein-coding	5.725	7.327	4.601	4.303	7.092	4.505	4.415	6.507	2.605	5.304	3.712	1.991	3.254	5.470	3.645	6.054	4.153	3.624	2.852	2.427	2.830	2.536	3.211	3.348	6.935
13806	chr7	137386865	137409722	+	0	NA	intron (NM_029886, intron 1 of 3)	Lx8|LINE|L1	12463	NM_029886	77252	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	3.634	nan	0.324	4.205	2.752	1.441	5.616	8.591	nan	3.818	1.666	0.930	4.949	4.540	6.594	5.699	4.147	6.363	1.456	1.633	0.994	2.616	1.448	1.213	6.396
9159	chr3	19408590	19415881	+	0	NA	Intergenic	Intergenic	-96360	NM_001163536	66326	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	7.961	nan	0.566	5.292	5.766	3.375	8.925	6.739	7.820	10.011	4.653	2.164	10.906	13.090	6.563	7.159	6.569	10.860	0.933	1.055	0.639	0.800	0.859	0.551	6.342
15574	chr9	118793663	118795758	+	0	NA	intron (NM_001113514, intron 3 of 13)	intron (NM_001113514, intron 3 of 13)	83018	NM_001113514	104099	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.845	1.111	0.709	3.064	2.046	1.089	3.226	3.136	2.544	2.812	0.686	0.877	3.390	4.465	4.244	4.883	2.570	4.133	1.068	1.272	0.949	1.026	nan	0.720	6.329
7270	chr18	57996185	58000843	+	0	NA	Intergenic	Intergenic	119836	NM_009194	20496	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	5.168	nan	0.693	nan	3.200	1.989	7.858	7.359	3.965	4.096	2.482	1.907	8.559	8.152	7.473	6.685	4.903	8.500	nan	0.411	0.474	nan	0.278	0.535	6.396
1797	chr10	120415081	120416812	+	0	NA	intron (NM_001347170, intron 3 of 5)	intron (NM_001347170, intron 3 of 5)	26423	NR_040626	320626	Mm.446091	NR_040626	ENSMUSG00000090191	9230105E05Rik	-	RIKEN cDNA 9230105E05 gene	ncRNA	8.598	14.300	3.433	15.131	5.000	5.495	5.967	7.179	5.498	21.023	6.438	4.229	6.266	7.656	11.594	12.548	5.452	12.292	6.582	1.476	6.230	8.170	2.974	7.901	20.092
1119	chr10	18399640	18401679	+	0	NA	Intergenic	Intergenic	-7016	NM_173390	215819	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	4.537	0.466	0.585	1.057	0.851	0.204	3.355	3.397	nan	1.626	0.165	0.422	5.078	3.954	3.372	4.272	5.526	3.119	0.846	0.833	0.516	0.612	2.742	1.176	3.448
12992	chr7	20423745	20430147	+	0	NA	Intergenic	L1Md_F3|LINE|L1	9004	NM_001166844	100043536	Mm.484979	NM_001166844	ENSMUSG00000096386	Vmn1r100	ENSMUSG00000074331|Gm10671	vomeronasal 1 receptor 100	protein-coding	4.482	3.646	1.629	3.345	4.195	3.576	7.612	8.569	4.724	4.746	2.624	4.836	6.606	5.222	5.528	6.040	5.230	5.394	1.710	1.487	1.880	1.657	2.537	2.827	2.831
3039	chr11	117649748	117650720	+	0	NA	Intergenic	ID4|SINE|ID	-4055	NM_198022	217351	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	1.634	3.104	2.278	1.674	2.463	2.761	5.896	3.182	2.958	2.246	3.531	3.261	2.984	3.816	3.542	4.568	2.918	2.829	1.302	nan	1.576	1.120	1.703	0.648	1.233
11293	chr5	66390627	66392986	+	0	NA	exon (NM_009686, exon 8 of 18)	exon (NM_009686, exon 8 of 18)	-54141	NM_001201416	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	3.076	0.983	0.875	1.731	1.248	0.782	2.810	4.664	3.110	2.250	2.096	2.307	1.871	2.732	3.543	3.604	3.374	2.312	4.958	2.148	3.301	5.525	1.597	1.248	2.741
11189	chr5	37102370	37107336	+	0	NA	exon (NM_178394, exon 6 of 13)	exon (NM_178394, exon 6 of 13)	19617	NM_001347348	76071	Mm.85280	NM_178394	ENSMUSG00000063646	Jakmip1	5830437M04Rik|C330021K24Rik|Gababrbp|Marlin-1	janus kinase and microtubule interacting protein 1	protein-coding	4.608	3.314	0.616	3.915	2.502	1.265	5.056	6.354	2.848	3.459	3.075	1.693	3.994	8.831	6.582	3.036	nan	4.367	3.406	1.164	0.686	2.978	1.614	1.116	3.935
15664	chrX	7417750	7420413	+	0	NA	intron (NR_027924, intron 1 of 1)	intron (NR_027924, intron 1 of 1)	1966	NR_027925	68355	Mm.45111	NR_027924		2010204K13Rik	0610010M13Rik|Cip7	RIKEN cDNA 2010204K13 gene	ncRNA	4.834	7.371	2.374	5.307	4.159	3.515	3.645	4.820	3.253	6.869	3.784	1.826	4.147	5.566	4.573	5.576	3.338	4.609	2.722	1.772	1.676	2.909	2.223	3.070	7.106
12895	chr6	149513839	149514923	+	0	NA	intron (NM_009753, intron 5 of 8)	(TG)n|Simple_repeat|Simple_repeat	105397	NM_009753	12121	Mm.177181	NM_009753	ENSMUSG00000003452	Bicd1	B830009D06Rik|bic-D 1	bicaudal D homolog 1 (Drosophila)	protein-coding	2.292	1.948	0.699	1.456	0.384	0.233	5.471	3.235	1.008	nan	1.524	0.646	2.396	4.380	6.245	5.740	2.148	1.420	1.345	nan	0.349	2.405	1.430	0.531	3.447
11708	chr5	124475239	124476990	+	0	NA	intron (NM_030259, intron 1 of 3)	B1_Mur1|SINE|Alu	2121	NM_030259	80291	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	1.770	3.384	0.757	4.750	3.212	1.765	3.534	1.973	2.881	3.384	2.759	2.418	1.500	4.013	3.176	2.989	nan	3.560	3.085	3.503	2.606	6.556	3.183	2.896	2.463
9239	chr3	37538321	37556483	+	0	NA	intron (NM_001310473, intron 16 of 16)	intron (NM_001310473, intron 16 of 16)	-62489	NR_130162	75947	Mm.109620	NR_130161	ENSMUSG00000085677	4930594O21Rik	-	RIKEN cDNA 4930594O21 gene	ncRNA	6.778	2.664	1.138	5.469	3.737	2.055	9.868	6.409	nan	7.170	3.254	2.496	8.141	8.693	8.425	10.038	7.578	10.407	nan	0.955	0.870	nan	1.265	1.100	11.520
14191	chr8	45966681	45969862	+	0	NA	intron (NM_001033148, intron 2 of 6)	intron (NM_001033148, intron 2 of 6)	6981	NM_001033148	69479	Mm.158282	NM_001033148	ENSMUSG00000071103	1700029J07Rik	-	RIKEN cDNA 1700029J07 gene	protein-coding	0.734	0.929	0.870	0.400	0.363	0.191	0.595	1.955	0.657	0.449	6.281	2.893	0.750	0.600	0.642	0.665	0.753	0.655	0.717	0.710	0.572	0.663	0.385	0.859	0.438
15396	chr9	96263165	96266171	+	0	NA	intron (NM_001184710, intron 1 of 9)	intron (NM_001184710, intron 1 of 9)	5420	NM_001184710	211586	Mm.17977	NM_178667	ENSMUSG00000032411	Tfdp2	1110029I05Rik|A330080J22Rik|DP-3|DP3	transcription factor Dp 2	protein-coding	6.205	7.454	2.066	7.541	3.020	2.415	3.808	4.103	4.184	9.461	7.735	2.679	4.476	6.048	5.767	6.164	3.574	6.973	3.379	2.144	2.268	4.575	2.092	3.241	9.280
6022	chr16	33675061	33679332	+	0	NA	Intergenic	Intergenic	-7270	NM_175256	77446	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629|OTTMUSG00000027315	heart development protein with EGF-like domains 1	protein-coding	6.753	2.022	1.191	7.078	6.234	3.693	6.182	7.276	3.867	4.556	2.149	1.376	5.202	7.562	3.684	6.369	5.061	5.576	1.743	1.619	1.209	1.357	2.203	1.219	6.867
6432	chr17	26638797	26652915	+	0	NA	intron (NM_026170, intron 9 of 9)	MIR|SINE|MIR	-30540	NM_025272	11974	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	8.511	6.478	2.088	11.150	4.706	2.217	5.844	6.468	5.392	7.753	5.560	2.419	6.144	9.925	7.582	8.824	3.862	8.626	3.206	1.915	1.546	5.409	1.824	1.522	9.916
14749	chr8	125852793	125859014	+	0	NA	intron (NM_175561, intron 12 of 33)	intron (NM_175561, intron 12 of 33)	42414	NM_175561	270109	Mm.145535	NM_175561	ENSMUSG00000060212	Pcnx2	A830048P05|AU067631|E330039K12Rik|Pcnxl2|mKIAA0435	pecanex homolog 2	protein-coding	2.249	nan	0.415	nan	2.993	2.065	nan	7.491	2.843	2.459	0.961	2.231	3.432	2.607	3.167	3.449	3.248	nan	nan	2.517	3.311	nan	3.388	nan	nan
915	chr1	179553078	179554250	+	0	NA	intron (NM_146105, intron 1 of 10)	intron (NM_146105, intron 1 of 10)	7135	NM_146105	226744	Mm.87662	NM_146105	ENSMUSG00000038949	Cnst	9630058J23Rik	consortin, connexin sorting protein	protein-coding	3.277	1.595	0.337	4.069	2.688	1.056	5.182	3.844	4.109	2.742	4.545	4.201	4.156	4.269	6.049	5.543	1.959	3.989	1.103	0.863	0.671	2.293	0.751	0.690	3.471
13869	chr7	146625707	146631506	+	0	NA	Intergenic	Intergenic	1313771	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	nan	nan	1.013	nan	1.790	0.969	1.249	1.672	nan	1.803	2.118	0.979	1.023	2.029	1.396	1.674	1.060	2.754	2.801	4.379	2.506	5.192	nan	1.684	nan
13665	chr7	123334461	123337760	+	0	NA	intron (NM_001122641, intron 1 of 18)	intron (NM_001122641, intron 1 of 18)	33805	NM_001122643	70497	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.780	0.754	0.238	0.619	0.732	0.337	0.402	nan	1.076	0.747	6.781	2.046	0.484	0.361	nan	0.745	0.714	0.899	3.115	0.904	0.889	1.281	1.525	1.735	1.100
2978	chr11	115372480	115376583	+	0	NA	Intergenic	Intergenic	-6775	NM_001346774	217310	Mm.205707	NM_175454	ENSMUSG00000034586	Hid1	C630004H02Rik	HID1 domain containing	protein-coding	4.606	11.328	4.644	5.793	2.323	1.090	nan	4.611	2.928	nan	3.594	2.446	2.787	4.393	5.607	5.964	3.394	5.484	4.658	nan	2.581	5.658	3.572	3.290	6.047
6492	chr17	29166797	29175434	+	0	NA	intron (NM_153166, intron 12 of 20)	intron (NM_153166, intron 12 of 20)	36059	NM_001002786	442827	Mm.440341	NM_001002786	ENSMUSG00000064147	Rab44	9830134C10Rik	RAB44, member RAS oncogene family	protein-coding	6.593	7.779	4.586	5.627	7.230	5.526	7.797	6.100	5.107	5.942	4.774	3.165	5.625	7.723	6.702	7.165	7.204	5.956	5.293	4.606	4.064	4.591	5.646	5.591	6.623
9370	chr3	67266909	67268409	+	0	NA	intron (NM_025822, intron 6 of 9)	intron (NM_025822, intron 6 of 9)	-106438	NM_010801	17349	Mm.10414	NM_010801	ENSMUSG00000048416	Mlf1	HLS7	myeloid leukemia factor 1	protein-coding	6.283	5.214	1.374	8.495	1.931	0.989	8.089	5.243	2.665	5.156	4.040	2.778	5.086	5.525	7.561	7.235	4.057	6.566	3.025	1.209	1.062	2.811	1.883	1.731	8.448
13379	chr7	87785080	87787450	+	0	NA	intron (NM_001143834, intron 3 of 10)	RMER6D|LTR|ERVK	202097	NM_001143834	108071	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	6.421	5.068	2.244	4.618	2.992	1.389	2.593	4.410	3.743	4.179	3.636	2.145	3.669	5.787	3.508	3.780	3.096	4.585	2.114	2.455	1.334	nan	1.505	0.608	5.883
9114	chr2	180912635	180914492	+	0	NA	intron (NM_173761, intron 3 of 4)	intron (NM_173761, intron 3 of 4)	7373	NM_173761	228994	Mm.30205	NM_173761	ENSMUSG00000038848	Ythdf1	2210410K23Rik|8030473O16	YTH domain family 1	protein-coding	7.049	0.536	1.171	2.976	4.222	2.862	7.411	5.189	5.570	4.695	0.879	1.276	8.425	5.105	4.903	8.646	7.872	8.007	0.558	0.624	0.441	0.526	0.737	0.334	8.646
8316	chr2	68293078	68296785	+	0	NA	intron (NM_016866, intron 14 of 17)	intron (NM_016866, intron 14 of 17)	177050	NM_016866	53416	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	5.058	0.614	0.269	2.242	1.131	0.436	6.684	7.636	2.892	4.193	0.824	0.363	4.660	5.759	6.294	7.744	6.671	5.030	0.556	0.628	0.364	0.994	0.520	0.204	6.374
4037	chr13	42417800	42418967	+	0	NA	Intergenic	RLTRETN_Mm|LTR|ERVK	116907	NM_010104	13614	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	3.519	nan	0.572	2.181	3.709	2.797	nan	3.306	nan	2.330	2.613	0.893	2.469	4.103	2.995	2.464	1.135	3.982	1.175	0.802	0.778	1.537	0.767	0.838	3.362
12916	chr7	6095203	6115066	+	0	NA	TTS (NM_031389)	TTS (NM_031389)	50837	NM_001013012	67109	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	6.532	2.922	1.165	5.332	3.659	2.242	5.303	9.394	5.323	7.620	3.044	2.507	6.254	7.916	6.012	7.161	7.071	7.676	3.352	2.420	2.171	4.220	4.184	3.214	8.439
2606	chr11	87860005	87863553	+	0	NA	intron (NM_001039684, intron 14 of 17)	MIRb|SINE|MIR	8554	NM_001039684	380718	Mm.24404	NM_001039684	ENSMUSG00000034121	Mks1	AK190930|B8d3	Meckel syndrome, type 1	protein-coding	nan	14.847	5.396	8.999	4.256	3.319	5.720	5.934	5.346	9.215	6.318	4.086	5.541	7.909	7.760	8.283	5.623	7.327	9.241	4.415	4.372	8.558	5.181	6.214	nan
6811	chr17	67606476	67608186	+	0	NA	Intergenic	Intergenic	25392	NM_001033340	240131	Mm.295736	NM_001033340	ENSMUSG00000073375	Lrrc30	Gm326	leucine rich repeat containing 30	protein-coding	4.950	0.603	0.231	0.433	1.688	0.323	2.664	1.269	nan	1.079	0.041	0.217	2.559	3.511	1.828	2.484	4.276	1.847	0.108	0.434	0.330	0.178	0.876	0.281	2.401
12644	chr6	118140673	118145756	+	0	NA	Intergenic	ORR1B2-int|LTR|ERVL-MaLR	-4074	NM_030165	78752	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	0.445	0.746	0.423	0.531	0.307	0.098	0.531	0.659	0.622	0.539	0.277	0.313	0.407	nan	0.928	1.151	0.416	0.790	6.990	3.203	2.137	5.690	nan	3.528	0.965
1551	chr10	84646239	84648930	+	0	NA	intron (NM_027423, intron 10 of 27)	ORR1E|LTR|ERVL-MaLR	25147	NM_027423	70428	Mm.335007	NM_027423	ENSMUSG00000034453	Polr3b	2700078H01Rik|A330032P03Rik|C85372|RPC2	polymerase (RNA) III (DNA directed) polypeptide B	protein-coding	8.555	8.775	2.073	10.388	4.255	2.689	4.445	7.603	5.056	10.941	5.260	3.802	6.139	7.784	8.494	10.394	4.121	8.963	4.314	1.813	1.807	8.129	nan	3.710	14.313
9672	chr3	106346789	106354519	+	0	NA	Intergenic	L1Md_T|LINE|L1	55528	NM_178412	229688	Mm.261645	NM_178412	ENSMUSG00000027902	Chil6	BYm|Chil8	chitinase-like 6	protein-coding	8.738	6.745	3.317	6.936	6.316	3.352	6.941	7.156	6.699	8.820	4.467	3.512	9.013	7.929	6.483	7.376	8.183	9.125	2.762	3.001	1.866	2.377	2.283	2.073	7.112
3981	chr13	37583300	37588283	+	0	NA	Intergenic	Intergenic	-240247	NM_026830	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	3.909	nan	0.656	4.609	4.300	2.830	2.366	nan	nan	8.688	1.225	0.728	4.857	8.769	3.760	nan	2.590	6.967	0.919	0.990	0.683	0.808	0.623	0.645	6.162
12445	chr6	90672673	90677506	+	0	NA	intron (NM_001134383, intron 6 of 13)	intron (NM_001134383, intron 6 of 13)	41440	NM_001134383	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.860	1.540	0.463	nan	0.602	0.226	0.749	0.862	0.698	0.783	0.261	0.429	0.641	0.646	0.836	1.548	0.727	nan	nan	1.473	0.710	4.947	2.766	1.844	0.991
6857	chr17	74794395	74796262	+	0	NA	intron (NM_152817, intron 12 of 19)	intron (NM_152817, intron 12 of 19)	77578	NM_152817	74196	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	5.849	7.953	3.326	6.616	3.231	2.265	7.448	6.944	nan	5.964	5.406	5.947	5.635	7.015	8.977	9.907	8.551	6.926	3.490	2.525	1.506	4.378	3.418	1.911	9.361
4607	chr14	37743218	37747018	+	0	NA	Intergenic	MMERVK9C_I-int|LTR|ERVK	-609796	NM_078478	66092	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	5.336	3.349	2.379	1.658	1.303	0.927	1.671	1.594	3.588	3.007	5.912	3.141	2.124	1.577	2.863	5.572	2.494	4.782	1.005	0.830	0.974	0.809	0.574	0.301	5.018
8188	chr2	35443032	35452968	+	0	NA	intron (NM_001308300, intron 1 of 6)	intron (NM_001308300, intron 1 of 6)	13449	NM_001308299	14594	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	5.568	0.945	0.528	5.480	4.707	2.755	4.844	nan	3.604	nan	1.130	1.090	8.097	8.522	6.553	9.804	5.570	7.105	1.026	0.758	0.602	1.081	0.742	0.506	12.164
12508	chr6	97094129	97100141	+	0	NA	Intergenic	Intergenic	-36724	NM_177233	320701	Mm.131700	NM_177233	ENSMUSG00000046500	Fam19a4	C130034I18Rik|Fam19a4 Tafa-4|Tafa-4	family with sequence similarity 19, member A4	protein-coding	7.308	3.508	1.595	9.326	4.072	2.046	4.117	4.813	5.665	7.919	4.160	2.474	7.764	9.302	7.149	10.265	5.650	8.436	nan	nan	1.546	2.698	1.569	1.491	8.076
5042	chr15	10615039	10623032	+	0	NA	intron (NM_001166408, intron 3 of 17)	B3|SINE|B2	18742	NR_033541	100038608	Mm.450744	NR_033541		Gm10389	ENSMUSG00000072658	predicted gene 10389	ncRNA	5.738	1.120	0.596	2.781	3.315	1.489	7.368	10.135	4.158	4.184	2.951	2.347	8.469	6.024	5.706	5.330	5.690	4.785	0.603	0.542	0.343	0.355	0.378	0.261	4.639
13310	chr7	79418388	79425649	+	0	NA	intron (NM_145946, intron 14 of 37)	intron (NM_145946, intron 14 of 37)	29680	NM_145946	208836	Mm.349493	NM_145946	ENSMUSG00000039187	Fanci	-	Fanconi anemia, complementation group I	protein-coding	0.484	8.521	5.620	nan	0.435	0.220	0.208	0.480	0.417	0.370	0.647	0.611	0.231	0.203	0.300	nan	0.383	0.524	2.033	1.241	0.908	1.568	2.091	1.718	nan
10631	chr4	132527447	132532870	+	0	NA	TTS (NM_007512)	TTS (NM_007512)	5256	NM_007512	11983	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	5.226	9.809	4.123	4.503	3.709	2.159	5.507	2.287	2.118	2.876	3.649	1.279	2.112	4.200	3.402	2.920	1.783	2.982	3.009	5.699	4.300	5.805	1.981	1.961	5.566
14206	chr8	47411545	47414709	+	0	NA	Intergenic	CpG	-60779	NM_175162	71069	Mm.23973	NM_175162	ENSMUSG00000038143	Stox2	4933409N07Rik|AI449080|AI835114|mKIAA1392	storkhead box 2	protein-coding	0.982	0.825	0.547	0.690	0.359	0.163	0.528	1.386	0.893	0.664	5.605	0.565	0.554	0.714	0.835	1.177	0.665	0.838	0.881	0.870	0.656	1.039	1.086	0.314	0.603
561	chr1	129447285	129449789	+	0	NA	intron (NM_172485, intron 2 of 27)	Lx|LINE|L1	175233	NM_172485	210417	Mm.380518	NM_172485	ENSMUSG00000042581	Thsd7b	1700074E13Rik|B930082A18|D130067I03Rik	thrombospondin, type I, domain containing 7B	protein-coding	1.204	nan	0.777	0.599	1.323	0.381	0.698	0.860	1.197	1.145	0.464	0.413	0.512	0.912	0.804	1.645	1.190	nan	nan	3.383	1.310	2.250	4.439	3.094	0.739
2112	chr11	44568141	44582093	+	0	NA	Intergenic	RLTR26_Mus|LTR|ERVK	-11200	NR_126460	75389	Mm.261421	NR_126460	ENSMUSG00000086501	4930597A21Rik	-	RIKEN cDNA 4930597A21 gene	ncRNA	0.317	8.579	4.965	0.727	0.207	0.088	0.217	nan	0.436	0.511	0.266	0.252	0.171	0.167	0.359	nan	0.347	nan	nan	0.650	0.481	nan	nan	0.144	0.307
13846	chr7	142904917	142909390	+	0	NA	Intergenic	Intergenic	-7187	NM_009377	21823	Mm.1292	NM_009377	ENSMUSG00000000214	Th	-	tyrosine hydroxylase	protein-coding	3.168	15.557	7.482	2.493	1.693	1.381	1.885	2.760	nan	2.166	2.754	1.657	2.463	2.235	3.104	3.477	2.728	3.851	4.680	2.793	2.663	5.662	4.917	4.616	4.921
6478	chr17	28476571	28479552	+	0	NA	intron (NM_010220, intron 1 of 10)	L1ME2|LINE|L1	8088	NM_010220	14229	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	3.195	1.200	0.424	4.096	3.438	1.774	4.523	4.180	2.347	2.878	3.662	1.838	3.235	4.673	5.238	6.172	3.374	4.896	2.215	1.242	1.249	3.086	1.051	1.047	8.389
15622	chr9	122087123	122090357	+	0	NA	Intergenic	ID_B1|SINE|B4	-28526	NM_001164572	20623	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	3.528	1.231	0.202	3.132	1.444	0.623	3.496	2.528	3.859	4.341	1.627	0.971	3.363	5.513	4.899	5.957	2.068	6.106	0.962	0.345	0.190	1.280	nan	0.295	6.736
2221	chr11	54835022	54843917	+	0	NA	3' UTR (NM_029327, exon 5 of 5)	3' UTR (NM_029327, exon 5 of 5)	19550	NR_040284	432562	Mm.406948	NR_040284	ENSMUSG00000086789	Lyrm7os	Gm12228|OTTMUSG00000005674	LYR motif containing 7, opposite strand	ncRNA	4.481	3.192	1.243	4.884	4.305	2.393	4.386	5.272	3.076	3.725	1.586	1.295	4.790	6.402	5.904	7.090	4.939	4.851	nan	1.393	1.067	1.762	1.365	1.029	4.947
2982	chr11	115492590	115511810	+	0	NA	intron (NM_008258, intron 2 of 4)	B3|SINE|B2	-10386	NM_015807	50773	Mm.390379	NM_015807	ENSMUSG00000020736	Nt5c	Dnt|Dnt1|Umph-2|Umph2	5',3'-nucleotidase, cytosolic	protein-coding	2.036	15.315	7.984	2.122	1.988	1.622	nan	nan	1.680	nan	1.042	0.845	0.997	1.506	1.692	1.528	1.180	nan	1.261	nan	1.601	0.875	1.130	1.126	1.583
15201	chr9	64938807	64941085	+	0	NA	intron (NM_144813, intron 2 of 9)	intron (NM_144813, intron 2 of 9)	11661	NM_144813	214111	Mm.156124	NM_144813	ENSMUSG00000034452	Slc24a1	-	solute carrier family 24 (sodium/potassium/calcium exchanger), member 1	protein-coding	0.501	0.610	0.933	0.288	0.501	0.183	0.352	0.516	0.521	0.307	0.236	0.334	0.203	0.510	nan	0.366	0.519	0.338	nan	5.067	7.339	2.524	3.738	4.604	0.379
1307	chr10	57908739	57910502	+	0	NA	Intergenic	Intergenic	115076	NM_020561	57319	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	15.627	18.471	7.105	15.380	9.776	6.707	9.924	9.369	8.608	17.753	8.254	6.296	10.566	13.637	12.237	13.582	10.413	11.745	7.947	4.571	4.486	8.534	5.439	4.948	18.201
14482	chr8	96701834	96711716	+	0	NA	Intergenic	RSINE1|SINE|B4	-160802	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	8.109	2.859	1.038	4.244	3.531	1.960	3.729	11.131	3.715	5.220	4.368	2.646	6.240	8.164	6.602	8.528	7.874	4.552	3.174	1.931	1.643	7.540	1.803	1.662	5.712
1812	chr10	121175510	121178295	+	0	NA	Intergenic	(TTA)n|Simple_repeat|Simple_repeat	134287	NM_029057	74694	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik	TBC1 domain family, member 30	protein-coding	4.580	5.244	1.449	4.729	2.575	1.801	3.697	3.748	2.476	4.673	1.454	1.010	4.651	5.783	5.482	7.083	4.741	nan	2.937	0.948	0.962	3.242	1.062	0.901	7.251
15344	chr9	79457409	79459075	+	0	NA	intron (NR_045336, intron 1 of 2)	intron (NR_045336, intron 1 of 2)	61060	NR_045336	100038575	Mm.367838	NR_045336	ENSMUSG00000111765	Gm10635	ENSMUSG00000074174	predicted gene 10635	ncRNA	3.915	0.848	0.342	1.825	2.457	0.957	1.955	2.777	2.375	3.247	0.849	0.522	3.783	3.804	1.926	2.099	1.943	2.196	0.715	nan	0.239	0.557	0.260	0.113	4.477
14997	chr9	43543546	43546343	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	-199632	NM_021424	58235	Mm.335096	NM_021424	ENSMUSG00000032012	Nectin1	AI835281|AW549174|Cd111|HIgR|HveC|PRR|PRR1|Pvrl1|nectin-1	nectin cell adhesion molecule 1	protein-coding	4.419	0.790	0.446	4.153	1.954	1.436	2.563	3.061	3.254	4.930	1.887	1.564	3.172	6.664	3.807	8.493	4.773	4.885	2.962	3.505	3.229	4.616	2.813	2.158	10.791
1769	chr10	116765084	116768566	+	0	NA	Intergenic	LTR88c|LTR|Gypsy?	37572	NR_131036	75878	Mm.370607	NR_131036		4930579P08Rik	-	RIKEN cDNA 4930579P08 gene	ncRNA	4.647	1.027	0.682	4.032	1.921	1.332	2.734	4.415	4.041	4.229	1.281	0.492	4.716	5.312	5.609	7.287	6.226	5.007	1.148	0.966	1.125	0.653	0.598	0.834	5.955
12425	chr6	89229857	89233213	+	0	NA	Intergenic	Intergenic	-15356	NR_033190	330379	Mm.297741	NM_201356		Gm839	-	predicted gene 839	ncRNA	4.956	2.606	1.075	nan	1.339	1.148	5.817	2.258	2.156	3.383	0.788	0.604	3.305	4.518	3.354	4.576	3.234	3.356	nan	1.420	1.117	1.103	3.392	2.493	5.023
15551	chr9	116131380	116134305	+	0	NA	intron (NM_029575, intron 1 of 6)	intron (NM_029575, intron 1 of 6)	42521	NM_029575	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	5.773	1.759	1.488	3.148	5.600	4.291	4.100	5.719	3.984	3.880	3.614	2.985	3.498	6.243	4.380	4.733	3.802	5.906	1.427	0.825	1.116	1.211	nan	1.042	5.627
1875	chr10	128346444	128348209	+	0	NA	intron (NM_026444, intron 1 of 10)	ID_B1|SINE|B4	9599	NM_026444	12974	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	14.278	4.919	1.327	11.741	13.520	11.078	14.381	11.931	7.104	19.333	11.655	4.955	9.240	13.435	10.116	12.221	10.691	9.778	3.954	4.286	6.659	5.058	5.473	7.184	21.730
7148	chr18	36078506	36079799	+	0	NA	intron (NM_001167891, intron 1 of 9)	L1MB8|LINE|L1	-27051	NR_015571	74966	Mm.379238	NM_030089		4930471G03Rik	1700007N01Rik	RIKEN cDNA 4930471G03 gene	ncRNA	3.866	19.602	8.063	4.679	2.557	1.592	1.418	2.003	1.760	3.485	1.713	1.681	1.255	2.366	1.588	nan	1.281	2.121	6.525	9.542	6.382	8.815	11.498	10.313	3.341
13940	chr7	151387053	151389503	+	0	NA	Intergenic	Intergenic	6073443	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	2.019	nan	0.532	1.787	1.680	0.521	4.925	1.440	nan	1.322	0.281	0.259	4.057	4.604	3.480	3.675	3.103	3.661	1.258	0.892	0.545	0.992	nan	0.519	3.438
11487	chr5	102193380	102197542	+	0	NA	Intergenic	L1Md_T|LINE|L1	-125540	NM_172882	72145	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	3.666	1.027	0.249	5.586	2.379	0.769	4.146	2.952	4.403	8.926	2.261	1.386	4.595	6.733	7.478	7.768	3.445	7.214	2.115	0.912	0.662	3.021	1.368	1.504	7.879
5087	chr15	27872182	27874149	+	0	NA	intron (NM_001081302, intron 10 of 56)	intron (NM_001081302, intron 10 of 56)	152683	NM_001081302	223435	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	1.830	0.601	0.334	1.406	3.752	1.756	3.034	3.071	1.346	1.674	0.998	1.398	1.762	2.748	2.161	1.545	1.695	1.793	3.807	4.189	3.149	5.060	4.189	3.108	1.923
15704	chrX	34283111	34284873	+	0	NA	Intergenic	L1Md_A|LINE|L1	-122408	NM_001243001	100042168	Mm.489575	NM_001243001	ENSMUSG00000078218	Btbd35f3	Gm3706	BTB domain containing 35, family member 3	protein-coding	4.187	4.747	1.447	6.156	4.355	3.588	2.014	1.970	3.627	9.893	3.766	1.740	2.783	5.183	3.318	3.475	1.814	4.728	2.364	1.684	1.891	2.060	1.102	1.848	6.164
15692	chrX	17738968	17742388	+	0	NA	Intergenic	ORR1A4|LTR|ERVL-MaLR	-168353	NM_028058	72018	Mm.41558	NM_028058	ENSMUSG00000025040	Fundc1	1500005J14Rik|1810033P05Rik	FUN14 domain containing 1	protein-coding	7.226	9.894	3.199	8.173	4.402	3.214	5.443	12.013	4.467	13.371	5.436	3.251	5.235	7.015	5.580	7.284	9.854	6.874	7.747	5.237	4.780	7.465	4.150	3.443	10.705
1673	chr10	98023742	98026233	+	0	NA	Intergenic	L1M4b|LINE|L1	-57897	NR_033537	100038699	Mm.467933	NR_033537		Gm10754	ENSMUSG00000074776	predicted gene 10754	ncRNA	1.419	0.560	0.381	0.522	0.593	0.446	0.734	1.430	1.002	1.163	5.297	3.128	1.104	0.897	0.787	0.950	1.015	1.186	nan	1.207	0.289	nan	0.766	0.620	0.856
15800	chrX	106021519	106024473	+	0	NA	TTS (NM_025379)	TTS (NM_025379)	-4228	NM_001109757	11977	Mm.254297	NM_009726	ENSMUSG00000033792	Atp7a	MNK	ATPase, Cu++ transporting, alpha polypeptide	protein-coding	3.116	0.660	0.307	1.673	3.042	2.196	3.651	3.059	2.803	3.327	0.971	0.751	3.580	4.035	2.462	3.080	4.049	2.708	0.652	0.998	0.631	0.322	0.554	0.420	2.756
15150	chr9	60349160	60355308	+	0	NA	intron (NM_001040426, intron 6 of 17)	intron (NM_001040426, intron 6 of 17)	158801	NM_001040426	207596	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	3.981	0.555	0.370	3.889	2.856	1.404	4.848	nan	4.420	5.028	1.880	2.566	5.800	5.275	6.651	6.909	3.159	7.566	1.537	1.244	0.837	1.982	1.268	0.680	8.261
4027	chr13	41643967	41648004	+	0	NA	Intergenic	Intergenic	-3458	NM_177808	328231	Mm.227476	NM_177808	ENSMUSG00000054258	Gm5082	A030008J09|EG328231	predicted gene 5082	protein-coding	6.524	nan	1.185	4.777	3.363	1.767	nan	2.816	4.467	5.114	1.233	1.464	3.096	5.597	3.404	4.062	2.958	5.583	1.999	2.537	1.055	1.401	2.140	1.246	3.665
6707	chr17	47903219	47907539	+	0	NA	intron (NM_001110824, intron 1 of 16)	intron (NM_001110824, intron 1 of 16)	19253	NM_028767	74123	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	5.974	17.689	7.136	3.773	2.429	1.255	2.037	2.477	2.257	3.029	2.440	0.904	1.727	3.529	2.039	2.950	nan	2.886	0.898	1.699	1.570	0.839	0.557	0.199	4.848
13114	chr7	31741289	31743050	+	0	NA	Intergenic	L1Md_F3|LINE|L1	29504	NM_001270542	626305	Mm.454021	NM_001270542	ENSMUSG00000078759	Scgb1b7	ABPA7_A29|Abpa29|Abpa7|EG626305|Gm6662	secretoglobin, family 1B, member 7	protein-coding	13.389	19.475	8.240	15.924	7.799	7.342	12.386	14.887	8.818	30.501	12.923	9.206	13.329	15.744	11.479	12.064	11.146	12.479	7.720	3.037	7.994	8.416	4.504	10.911	22.790
5582	chr15	95658054	95662011	+	0	NA	Intergenic	Intergenic	-5261	NM_207533	223843	Mm.152937	NM_207533	ENSMUSG00000045608	Dbx2	9430056A22Rik|9630005K15|AI846217|Gm1229	developing brain homeobox 2	protein-coding	7.652	2.005	0.367	5.464	2.519	1.280	8.320	7.591	2.680	4.226	1.227	1.650	8.135	9.307	8.050	nan	4.736	6.033	2.410	0.742	0.444	1.899	1.127	0.552	8.967
8003	chr2	23424912	23428038	+	0	NA	Intergenic	L1Md_T|LINE|L1	105229	NM_008752	18232	Mm.131616	NM_008752	ENSMUSG00000069132	Nxph2	-	neurexophilin 2	protein-coding	7.275	4.047	1.931	5.337	4.563	3.183	4.553	3.912	nan	6.349	3.043	1.822	6.857	7.112	5.107	6.639	4.658	6.264	1.919	1.303	2.009	2.117	1.600	2.266	8.676
8503	chr2	103262371	103277796	+	0	NA	intron (NM_007914, intron 6 of 8)	intron (NM_007914, intron 6 of 8)	33113	NM_007914	13661	Mm.10724	NM_007914	ENSMUSG00000012350	Ehf	9030625L19Rik|AU019492	ets homologous factor	protein-coding	4.895	0.467	0.283	2.967	1.234	0.759	4.431	5.291	2.797	3.858	1.340	0.556	5.298	5.571	5.292	8.007	6.726	4.912	0.709	0.764	0.519	nan	0.579	0.477	8.923
6367	chr17	17962646	17966831	+	0	NA	Intergenic	L1_Mus1|LINE|L1	-5720	NM_008042	14294	Mm.378918	NM_008042	ENSMUSG00000079700	Fpr3	ALX|Fpr-rs1|Fpr-s1|Fprl1|LXA4-R|Lxa4r	formyl peptide receptor 3	protein-coding	16.701	2.747	1.341	8.970	15.608	7.991	21.737	11.801	6.228	12.786	13.094	7.585	8.408	17.270	10.170	12.787	14.213	8.689	6.960	9.818	6.573	5.583	11.945	11.158	18.484
15113	chr9	57108725	57111527	+	0	NA	intron (NM_001110350, intron 14 of 20)	intron (NM_001110350, intron 14 of 20)	-20651	NM_028636	73744	Mm.30110	NM_028636	ENSMUSG00000032295	Man2c1	1110025H24Rik	mannosidase, alpha, class 2C, member 1	protein-coding	9.049	13.667	3.619	9.113	3.170	2.897	6.736	8.782	5.050	9.914	5.422	3.193	5.923	7.728	7.917	9.428	4.843	7.931	5.256	2.326	3.849	5.632	3.622	4.414	17.759
7236	chr18	53420018	53429247	+	0	NA	Intergenic	Intergenic	-6625	NM_008908	19038	Mm.4587	NM_008908	ENSMUSG00000024538	Ppic	CyP-20c	peptidylprolyl isomerase C	protein-coding	7.491	nan	0.785	4.439	6.383	3.630	4.293	4.292	4.989	5.618	4.089	3.040	6.350	6.425	4.726	5.754	5.021	6.373	nan	2.233	1.651	nan	1.524	1.168	5.762
9166	chr3	21535914	21538919	+	0	NA	Intergenic	Intergenic	-539236	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.574	nan	0.386	0.913	0.902	0.395	0.780	0.713	1.235	0.940	6.584	2.504	0.790	0.782	0.738	0.638	0.710	1.521	1.005	0.697	0.262	1.186	0.259	0.350	0.703
5169	chr15	53728451	53734019	+	0	NA	intron (NM_177225, intron 2 of 4)	intron (NM_177225, intron 2 of 4)	171201	NM_177225	320679	Mm.442455	NM_177225	ENSMUSG00000058656	Samd12	A830094I09Rik	sterile alpha motif domain containing 12	protein-coding	1.706	0.551	0.318	nan	0.717	0.336	nan	nan	nan	nan	7.295	3.140	0.491	1.180	0.945	nan	0.764	1.760	1.159	0.783	0.594	1.476	0.582	0.489	1.287
14179	chr8	42108397	42112640	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	283251	NR_045497	69966	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA	2.613	1.140	0.918	4.487	2.829	2.580	1.800	1.522	2.086	1.878	1.473	1.383	2.303	3.235	2.138	2.164	1.827	2.045	0.763	1.400	1.593	0.784	0.881	0.717	nan
15715	chrX	39465418	39466899	+	0	NA	Intergenic	Intergenic	119892	NM_001177380	78631	Mm.243738	NM_001177380	ENSMUSG00000079619	Cypt15	1700085A12Rik	cysteine-rich perinuclear theca 15	protein-coding	1.882	0.305	0.107	1.040	1.492	0.720	3.091	4.296	2.818	2.685	1.308	1.290	3.752	3.462	2.498	2.680	5.680	2.689	0.650	0.439	0.310	0.252	0.227	0.495	0.820
13474	chr7	106269019	106271828	+	0	NA	Intergenic	L1_Mus3|LINE|L1	54105	NR_030720	668128	Mm.484022	NR_030720		Gm8989	EG668128|Gm21911	very large inducible GTPase 1 pseudogene	pseudo	2.077	8.723	6.999	2.020	2.129	1.806	1.537	1.777	1.832	1.665	0.675	1.015	0.806	nan	1.609	nan	1.718	nan	nan	1.933	1.892	0.616	0.834	0.869	2.007
12861	chr6	146836505	146839824	+	0	NA	Intergenic	ORR1A4|LTR|ERVL-MaLR	-11946	NM_027059	69371	Mm.252733	NM_027059	ENSMUSG00000030292	Smco2	1700023A16Rik	single-pass membrane protein with coiled-coil domains 2	protein-coding	7.754	5.336	2.045	7.581	4.129	2.301	7.831	9.461	4.786	8.466	5.677	2.897	7.608	9.042	8.232	10.452	6.813	7.840	3.072	nan	1.956	nan	2.263	1.602	10.065
7721	chr19	34427450	34429174	+	0	NA	Intergenic	Lx2B|LINE|L1	46823	NM_009890	12642	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	2.599	1.280	0.805	3.543	1.453	0.408	1.046	nan	2.242	1.721	1.494	2.428	0.950	1.729	1.397	1.824	1.443	2.379	0.457	0.617	0.473	0.584	0.454	0.182	1.043
7765	chr19	40904926	40914641	+	0	NA	intron (NM_028319, intron 3 of 4)	MTA_Mm|LTR|ERVL-MaLR	15078	NM_028319	72672	Mm.313523	NM_028319	ENSMUSG00000049164	Zfp518a	2810401C22Rik|6330417C12Rik|AI426493|Zfp518|Znf518|Znf518a|mKIAA0335	zinc finger protein 518A	protein-coding	5.620	2.643	0.841	5.910	4.490	2.249	3.922	nan	5.234	8.235	1.931	1.008	6.216	5.856	4.458	7.457	6.862	7.713	0.922	0.970	0.808	1.538	0.890	0.895	8.994
1569	chr10	86614740	86619749	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-68283	NR_015572	66263	Mm.392261	NR_015572		1810014B01Rik	-	RIKEN cDNA 1810014B01 gene	pseudo	nan	0.457	0.448	0.128	0.172	0.050	0.229	0.212	0.156	0.208	0.315	0.119	0.087	nan	0.157	0.426	0.327	nan	7.233	6.318	3.265	nan	nan	4.038	0.380
15558	chr9	116978071	116979715	+	0	NA	intron (NM_001172122, intron 3 of 13)	IMPB_01|Satellite|Satellite	273590	NM_001172123	207181	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding	2.418	0.517	0.160	1.358	0.678	0.526	1.561	1.729	2.567	2.655	1.410	0.539	2.718	2.973	1.697	3.347	1.869	3.453	0.475	0.486	0.373	0.496	nan	0.386	1.926
13916	chr7	150469141	150471565	+	0	NA	Intergenic	Intergenic	5155518	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	2.025	1.487	0.163	2.554	1.151	0.330	2.087	3.168	2.833	3.264	0.607	0.341	2.449	3.402	2.677	3.253	2.811	4.867	0.932	0.472	0.354	1.416	nan	0.322	3.013
12195	chr6	41583797	41594212	+	0	NA	Intergenic	Lx5c|LINE|L1	-16478	NM_001146351	13848	Mm.271976	NM_007680	ENSMUSG00000029869	Ephb6	Cekl|Mep	Eph receptor B6	protein-coding	1.357	0.595	0.337	1.364	0.728	0.366	4.497	8.262	1.940	2.995	1.259	0.365	4.179	4.490	5.309	11.290	6.346	nan	nan	0.492	0.219	nan	nan	0.365	nan
15222	chr9	66014117	66031852	+	0	NA	intron (NM_173185, intron 12 of 13)	MTD|LTR|ERVL-MaLR	-37185	NM_011149	19035	Mm.335249	NM_011149	ENSMUSG00000032383	Ppib	AA408962|AA553318|AI844835|Cphn-2|Cphn2|CyP-20b	peptidylprolyl isomerase B	protein-coding	3.967	1.011	0.566	2.771	1.551	0.916	3.685	2.646	2.349	2.883	1.313	0.850	6.645	6.110	nan	4.961	2.764	4.914	nan	1.185	0.985	1.335	0.958	0.682	7.525
11567	chr5	112699472	112702620	+	0	NA	intron (NM_028901, intron 42 of 43)	(GGGA)n|Simple_repeat|Simple_repeat	-92246	NR_040675	67360	Mm.59218	NR_040675	ENSMUSG00000098230	1700095B10Rik	-	RIKEN cDNA 1700095B10 gene	ncRNA	1.682	8.866	2.643	2.591	1.216	0.345	nan	1.097	1.555	1.820	1.596	1.300	0.507	1.262	1.166	1.307	0.955	1.478	1.838	2.243	1.324	2.464	1.485	1.241	1.079
6244	chr16	94656523	94658780	+	0	NA	intron (NM_001347731, intron 1 of 10)	intron (NM_001347731, intron 1 of 10)	46232	NM_001347731	13548	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|ENSMUSG00000074897|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	5.414	1.222	0.764	3.075	2.683	0.928	3.512	3.347	2.826	2.347	0.984	0.785	4.788	5.132	4.544	4.032	2.696	4.860	nan	0.599	0.760	0.884	0.818	0.411	3.106
9718	chr3	115468003	115471640	+	0	NA	Intergenic	Intergenic	245234	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	4.033	1.268	0.867	6.024	2.481	1.407	1.790	1.271	3.079	2.637	0.906	1.077	1.176	2.432	1.679	nan	1.949	3.950	1.918	1.999	1.050	1.321	nan	1.928	nan
7915	chr19	61015512	61017433	+	0	NA	intron (NM_018869, intron 2 of 15)	B3|SINE|B2	124368	NR_131956	414758	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	6.079	2.082	1.004	5.919	2.912	0.884	1.775	3.743	3.336	3.664	2.039	1.360	2.076	3.230	2.912	3.307	2.209	5.147	1.133	0.907	0.281	2.320	1.018	0.247	4.305
2542	chr11	82765179	82767097	+	0	NA	3' UTR (NM_025884, exon 1 of 1)	3' UTR (NM_025884, exon 1 of 1)	1793	NM_025884	66983	Mm.29622	NM_025884	ENSMUSG00000046010	Zfp830	2410003C20Rik|AV301118|AW048207|Ccdc16|Omcg1|Znf830	zinc finger protein 830	protein-coding	5.583	6.306	2.847	6.384	3.200	1.614	nan	1.469	3.408	3.379	1.717	0.993	1.927	nan	nan	3.203	1.806	nan	0.619	1.671	nan	0.825	0.595	0.621	4.718
15258	chr9	69916678	69927785	+	0	NA	Intergenic	ORR1B1|LTR|ERVL-MaLR	-67235	NM_016787	12175	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	0.864	1.573	1.291	0.525	0.368	0.165	1.437	1.973	1.801	0.865	1.918	2.782	0.590	0.890	nan	0.568	0.465	0.516	nan	3.458	2.581	4.738	9.563	7.225	0.496
9613	chr3	101469759	101475783	+	0	NA	Intergenic	Intergenic	95646	NM_207205	78908	Mm.257997	NM_207205	ENSMUSG00000042035	Igsf3	1700016K10Rik|2810035F16Rik|4833439O17Rik|mKIAA0466	immunoglobulin superfamily, member 3	protein-coding	4.032	0.671	0.483	4.072	3.123	1.363	4.122	6.171	3.906	4.694	nan	3.396	6.273	7.749	5.370	nan	3.808	5.076	1.616	1.233	1.153	1.812	2.146	1.304	6.130
6001	chr16	32449502	32451678	+	0	NA	intron (NM_001163160, intron 1 of 8)	B2_Mm1t|SINE|B2	19360	NM_001163160	13026	Mm.98775	NM_009981	ENSMUSG00000005615	Pcyt1a	CTalpha|Cctalpha|Ctpct|Cttalpha	phosphate cytidylyltransferase 1, choline, alpha isoform	protein-coding	2.148	0.545	0.564	1.134	1.364	1.307	3.798	2.355	1.653	1.387	0.675	0.539	4.118	3.598	4.243	6.201	3.875	5.062	0.710	0.358	0.788	0.795	nan	0.426	3.594
10439	chr4	118789866	118800971	+	0	NA	Intergenic	(CAGA)n|Simple_repeat|Simple_repeat	-12832	NM_146309	258306	Mm.377426	NM_146309	ENSMUSG00000111159	Olfr1337	MOR259-10|Olfr219-ps1	olfactory receptor 1337	protein-coding	5.424	4.436	1.421	3.125	2.957	1.346	3.265	5.635	3.094	3.803	6.398	3.251	2.154	4.209	3.482	3.484	1.798	3.854	2.319	1.922	1.203	3.273	1.596	0.989	6.194
6289	chr17	3285242	3287032	+	0	NA	Intergenic	RLTR20A4|LTR|ERVK	-40436	NM_001122998	24001	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	2.218	0.700	0.147	2.013	1.961	1.443	2.178	3.429	2.303	2.304	2.091	0.534	1.671	3.780	2.711	2.957	nan	3.116	nan	0.814	0.548	0.832	0.889	0.323	3.009
13177	chr7	52565250	52569949	+	0	NA	Intergenic	Intergenic	-551883	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	1.621	0.728	0.366	1.387	1.402	0.889	3.379	5.806	2.215	1.746	2.578	2.310	2.693	2.507	3.264	2.522	2.128	2.490	0.943	0.724	0.603	0.684	0.772	0.547	2.415
10119	chr4	57857353	57860874	+	0	NA	intron (NM_009649, intron 2 of 2)	(TCTA)n|Simple_repeat|Simple_repeat	4551	NM_001035533	11641	Mm.467752	NM_009649	ENSMUSG00000038729	Akap2	AA959716|AI649048|Akap-2|Akap-kl|B230340M18Rik|Prka2	A kinase (PRKA) anchor protein 2	protein-coding	4.981	nan	1.230	7.484	2.541	1.363	nan	1.957	3.248	2.944	2.109	1.168	1.597	3.456	2.945	3.902	1.890	4.623	nan	1.130	0.560	1.119	0.782	0.525	3.027
530	chr1	121976626	121982331	+	0	NA	Intergenic	(TTCC)n|Simple_repeat|Simple_repeat	-411498	NM_025860	66942	Mm.44219	NM_025860	ENSMUSG00000001674	Ddx18	2310005B10Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding	9.764	0.764	0.962	3.795	6.884	5.056	6.105	6.830	3.899	4.800	1.355	1.371	5.514	7.143	4.060	7.230	5.721	5.478	0.732	0.940	0.881	0.595	0.897	0.668	5.658
3805	chr12	120639866	120642752	+	0	NA	Intergenic	Intergenic	695347	NM_001160385	217951	Mm.387395	NM_001160385	ENSMUSG00000048004	Tmem196	Gm528	transmembrane protein 196	protein-coding	6.088	0.709	0.227	2.614	2.399	0.980	2.439	3.078	2.854	3.498	1.735	1.348	4.977	5.246	4.448	5.847	5.486	3.578	0.812	0.872	0.472	0.670	0.422	0.299	3.947
3067	chr11	118766192	118773457	+	0	NA	intron (NM_001039168, intron 2 of 14)	intron (NM_001039168, intron 2 of 14)	-8783	NM_001285438	52897	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	0.158	nan	0.269	0.277	0.066	0.031	nan	nan	0.144	nan	0.193	0.136	0.045	0.087	0.073	0.343	0.142	nan	1.411	nan	2.109	7.330	0.706	0.581	0.325
8715	chr2	137581739	137587688	+	0	NA	Intergenic	Lx8|LINE|L1	-468193	NM_013822	16449	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0.727	0.905	0.429	1.295	0.406	0.082	0.417	0.656	0.753	0.536	6.745	0.871	0.546	0.513	0.693	1.055	0.574	1.207	0.748	0.431	0.324	0.666	0.352	0.239	0.764
10424	chr4	117694262	117699258	+	0	NA	Intergenic	(TCCC)n|Simple_repeat|Simple_repeat	-14535	NM_023178	66233	Mm.29142	NM_023178	ENSMUSG00000009640	Dmap1	1500016M21Rik|DNMAP1|DNMTAP1|Dmtap1|mKIAA1425	DNA methyltransferase 1-associated protein 1	protein-coding	0.965	0.709	0.336	1.127	1.380	0.632	1.221	0.937	1.499	1.432	0.474	0.886	0.850	1.800	1.070	nan	0.566	1.966	5.653	3.827	2.033	5.863	5.494	3.427	1.345
7971	chr2	13319836	13322337	+	0	NA	intron (NM_001081084, intron 52 of 66)	(CA)n|Simple_repeat|Simple_repeat	-49671	NM_009105	20163	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	3.881	1.411	0.589	5.060	1.410	0.478	1.911	2.477	2.292	1.796	1.283	1.556	2.290	2.325	3.281	3.291	1.918	4.267	1.020	0.631	0.245	1.336	0.455	0.139	2.804
11929	chr5	144918250	144924760	+	0	NA	intron (NM_001038627, intron 1 of 17)	MER58A|DNA|hAT-Charlie	-24689	NR_106006	102465629		NR_106006	ENSMUSG00000098822	Mir7039	Gm27824|mmu-mir-7039	microRNA 7039	ncRNA	4.946	1.241	0.882	3.025	3.090	1.875	4.778	4.765	3.162	2.958	2.779	2.674	4.218	4.526	4.505	5.188	5.457	4.677	2.188	1.725	1.856	2.055	1.815	1.668	4.139
9320	chr3	55415039	55416670	+	0	NA	intron (NM_019978, intron 4 of 16)	intron (NM_019978, intron 4 of 16)	-45904	NM_001195539	13175	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.515	0.559	0.434	nan	0.494	0.408	0.928	0.358	0.357	0.285	0.608	0.248	0.205	0.330	nan	nan	0.525	nan	5.367	4.650	4.586	6.625	5.032	4.131	0.836
470	chr1	95339565	95343566	+	0	NA	Intergenic	Lx3C|LINE|L1	27937	NM_026321	67698	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	8.562	nan	1.640	7.836	4.259	3.042	6.115	7.171	4.405	7.493	4.419	3.067	7.105	7.160	8.013	11.830	6.479	7.269	nan	1.870	1.697	nan	2.270	2.022	10.497
1524	chr10	80884128	80885851	+	0	NA	intron (NM_001081688, intron 4 of 17)	intron (NM_001081688, intron 4 of 17)	5173	NM_001081688	432478	Mm.235302	NM_001081688	ENSMUSG00000059406	Tmprss9	Serase-1B	transmembrane protease, serine 9	protein-coding	2.288	1.392	0.648	6.254	2.349	0.794	0.963	2.419	2.316	4.948	1.455	0.709	1.733	3.248	2.539	3.131	1.278	4.105	nan	1.478	0.955	4.042	1.012	0.992	4.666
11113	chr5	31521673	31523958	+	0	NA	exon (NM_028150, exon 2 of 5)	exon (NM_028150, exon 2 of 5)	3947	NM_028150	72195	Mm.164187	NM_028150	ENSMUSG00000053134	Supt7l	2610524B01Rik|6030455L14Rik	suppressor of Ty 7-like	protein-coding	9.862	15.574	6.194	9.675	3.957	2.446	9.960	6.989	5.297	9.226	7.356	4.174	7.582	11.432	9.906	10.267	8.052	9.703	7.765	6.046	4.007	8.221	7.564	6.906	12.828
4142	chr13	53162500	53163864	+	0	NA	intron (NM_013846, intron 1 of 8)	intron (NM_013846, intron 1 of 8)	122927	NM_013846	26564	Mm.342774	NM_013846	ENSMUSG00000021464	Ror2	Ntrkr2|mRor2	receptor tyrosine kinase-like orphan receptor 2	protein-coding	nan	0.958	0.471	0.980	0.685	0.273	3.333	2.595	1.949	2.038	5.185	2.270	3.468	3.603	2.177	2.591	1.498	1.457	0.527	0.506	0.271	0.719	0.294	0.449	1.615
6652	chr17	45728940	45733451	+	0	NA	Intergenic	Intergenic	2649	NM_028164	72240	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	3.115	5.183	1.992	4.278	1.789	0.949	1.091	1.222	1.382	2.445	2.556	0.977	0.865	nan	1.693	2.401	nan	2.328	4.183	4.882	3.846	5.829	4.738	3.359	3.077
5142	chr15	38428219	38432219	+	0	NA	Intergenic	Intergenic	60328	NR_105916	102465574		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	4.068	0.519	0.715	1.043	1.613	1.467	5.687	4.799	2.353	2.317	0.867	0.606	6.852	3.363	4.133	3.595	7.052	3.083	0.950	0.698	0.853	nan	0.388	0.623	nan
2360	chr11	68883662	68885693	+	0	NA	Intergenic	Intergenic	-3876	NM_177060	320040	Mm.305696	NM_177060	ENSMUSG00000046490	Rnf222	9930039A11Rik	ring finger protein 222	protein-coding	7.733	11.005	3.853	9.963	4.290	2.465	8.473	7.628	5.327	7.201	5.220	3.438	7.049	11.893	11.209	9.662	6.147	9.107	9.335	5.899	4.583	11.789	7.569	6.850	11.920
11804	chr5	136353327	136354531	+	0	NA	intron (NM_001291239, intron 8 of 22)	intron (NM_001291239, intron 8 of 22)	21874	NR_030500	723975		NR_030500	ENSMUSG00000106479	Mir721	Mirn721|miRY|mir-721|mmu-mir-721	microRNA 721	ncRNA	4.588	1.118	0.752	3.859	2.439	2.491	3.048	2.555	2.609	2.931	2.918	1.846	2.607	3.511	2.902	3.287	1.572	3.406	3.397	1.988	1.857	3.813	3.472	3.571	3.141
14496	chr8	97307961	97313356	+	0	NA	Intergenic	Intergenic	-764685	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	8.344	2.155	1.157	4.298	6.450	4.514	8.143	7.466	3.815	4.934	5.075	3.075	10.177	9.287	6.125	7.250	6.596	4.736	1.704	2.056	2.147	2.911	1.406	1.208	8.434
15251	chr9	69300381	69309480	+	0	NA	intron (NM_001289916, intron 1 of 9)	PB1D7|SINE|Alu	15089	NM_001289916	19883	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	9.493	3.092	1.270	8.289	4.924	2.689	7.691	10.252	7.804	9.871	9.538	4.685	9.107	11.022	8.960	10.556	5.593	10.298	nan	2.012	1.621	2.318	2.288	2.105	11.727
654	chr1	136116981	136124071	+	0	NA	TTS (NM_014193)	TTS (NM_014193)	10657	NR_046168	329253	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21|OTTMUSG00000026868	predicted gene 15850	ncRNA	7.924	0.877	0.419	nan	2.276	1.455	8.767	5.244	2.622	3.110	0.374	0.753	4.983	7.173	6.226	9.011	4.771	4.723	1.120	0.904	0.598	1.220	0.714	0.700	11.185
2403	chr11	70395530	70402706	+	0	NA	intron (NM_029231, intron 5 of 16)	Charlie4|DNA|hAT-Charlie	10913	NM_029231	75273	Mm.340601	NM_029231	ENSMUSG00000018921	Pelp1	4930563C04Rik|MNAR	proline, glutamic acid and leucine rich protein 1	protein-coding	5.557	8.514	3.205	4.970	3.613	2.314	2.941	5.318	4.392	4.746	6.932	4.307	4.264	5.660	4.300	5.038	3.377	5.307	1.664	1.031	0.825	1.057	nan	0.802	4.889
12621	chr6	115599093	115600893	+	0	NA	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-1945	NM_023290	67027	Mm.101316	NM_023290	ENSMUSG00000000439	Mkrn2	2610002L04Rik|C81377	makorin, ring finger protein, 2	protein-coding	4.186	8.365	4.560	5.321	2.972	1.416	3.093	8.664	3.830	3.105	3.045	1.287	4.964	5.153	5.224	6.194	3.176	5.888	2.729	1.533	0.618	1.938	nan	0.890	3.858
10042	chr4	45531914	45536505	+	0	NA	Intergenic	MT2B2|LTR|ERVL	-3381	NM_001033306	230126	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	6.850	1.957	0.924	5.591	3.498	1.623	4.106	6.394	4.713	5.038	3.770	2.955	4.462	6.171	5.762	6.815	3.220	5.707	1.365	1.111	0.825	nan	0.681	0.416	8.091
13729	chr7	132715722	132717456	+	0	NA	intron (NM_001347630, intron 3 of 3)	B2_Mm2|SINE|B2	60327	NM_001347630	77938	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	3.319	2.373	0.595	2.953	2.158	1.131	3.658	3.487	2.285	3.768	3.912	2.291	2.629	3.837	2.525	2.315	1.290	2.853	1.259	2.447	1.020	1.524	0.759	0.753	2.519
2261	chr11	59711939	59717628	+	0	NA	intron (NM_012027, intron 3 of 23)	intron (NM_012027, intron 3 of 23)	25371	NR_045476	69320	Mm.443242	NR_045476	ENSMUSG00000086330	1700007J10Rik	4930573L17Rik	RIKEN cDNA 1700007J10 gene	ncRNA	5.777	2.577	1.374	7.822	4.986	2.910	2.848	4.911	4.316	5.917	0.923	1.208	4.752	6.806	4.353	5.717	4.929	5.736	nan	2.569	2.081	4.636	2.307	2.307	nan
11582	chr5	114274548	114279117	+	0	NA	Intergenic	Intergenic	-3071	NM_148935	116810	Mm.17709	NM_148935	ENSMUSG00000042002	Foxn4	-	forkhead box N4	protein-coding	2.748	7.757	1.730	3.178	1.302	0.789	0.906	0.569	1.509	1.531	2.167	0.910	0.656	1.270	1.532	1.952	0.887	1.719	nan	nan	1.991	0.507	nan	0.620	2.360
11033	chr5	17368481	17372135	+	0	NA	Intergenic	L1_Mus1|LINE|L1	-105814	NM_027609	70935	Mm.332225	NM_027609	ENSMUSG00000058643	Speer4f1	4922502J04Rik|SPEER-4F|Speer4f	spermatogenesis associated glutamate (E)-rich protein 4F1	protein-coding	5.516	0.446	0.356	4.649	5.631	2.966	4.079	5.478	6.473	6.846	2.254	0.882	4.563	6.176	5.047	4.355	5.481	8.329	0.748	0.829	0.436	0.544	0.689	0.467	2.187
9014	chr2	167141305	167144033	+	0	NA	intron (NM_008420, intron 1 of 1)	intron (NM_008420, intron 1 of 1)	46149	NM_008420	16500	Mm.205341	NM_008420	ENSMUSG00000050556	Kcnb1	Kcr1-1|Kv2.1|Shab	potassium voltage gated channel, Shab-related subfamily, member 1	protein-coding	2.165	2.078	1.161	2.187	2.234	0.748	1.520	2.852	1.272	1.694	1.228	0.830	1.314	1.581	1.680	1.664	1.188	1.561	nan	3.269	2.511	4.164	2.790	2.529	1.478
156	chr1	51534077	51536570	+	0	NA	Intergenic	RSINE1|SINE|B4	-56924	NM_001310549	109019	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	12.323	10.800	5.681	9.093	7.079	3.533	6.234	7.116	7.142	8.404	8.883	7.369	7.362	9.503	7.938	11.260	10.028	9.160	5.053	2.581	2.407	4.923	2.878	3.365	9.390
3993	chr13	37984222	37989953	+	0	NA	intron (NM_025965, intron 4 of 7)	intron (NM_025965, intron 4 of 7)	7103	NM_025965	107513	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	4.407	nan	0.475	3.583	2.870	1.616	5.298	5.426	5.087	nan	2.761	1.542	7.209	8.385	7.084	7.106	3.595	6.291	1.403	1.038	0.791	1.401	1.912	1.616	6.339
6324	chr17	8463979	8466038	+	0	NA	Intergenic	MTEb|LTR|ERVL-MaLR	30585	NM_009309	20997	Mm.913	NM_009309	ENSMUSG00000062327	T	Bra|D17Mit170|Low|Lr|T1|Tl2|Tl3|cou|me75	brachyury	protein-coding	5.741	1.277	0.387	2.252	1.921	0.728	4.015	5.669	2.113	2.019	0.583	0.680	3.094	6.457	4.767	6.674	5.135	2.843	nan	0.753	0.599	1.607	0.965	0.187	7.112
10186	chr4	69876465	69883778	+	0	NA	Intergenic	Intergenic	530314	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	1.751	0.769	0.388	0.844	0.374	0.285	1.195	0.734	0.743	0.469	0.722	0.314	0.674	1.134	1.718	nan	0.469	1.222	2.169	1.844	1.486	nan	nan	1.143	nan
11871	chr5	139672512	139677963	+	0	NA	Intergenic	Intergenic	61096	NM_174850	231830	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	3.513	3.706	1.684	5.386	3.092	2.082	2.829	3.765	3.513	4.510	3.858	3.420	2.964	5.283	4.035	4.344	2.536	4.210	6.315	4.902	4.798	6.507	nan	6.928	4.776
9555	chr3	96029615	96032802	+	0	NA	intron (NM_013841, intron 12 of 14)	intron (NM_013841, intron 12 of 14)	27247	NM_013841	22365	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	4.272	1.192	0.822	2.811	4.137	2.387	7.580	6.275	3.000	3.079	2.975	3.372	3.902	5.342	5.600	3.495	3.910	5.396	3.319	1.571	0.675	1.461	3.143	1.834	5.084
13193	chr7	52918964	52923596	+	0	NA	Intergenic	MTE-int|LTR|ERVL-MaLR	-905564	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	4.723	0.685	0.420	0.698	1.416	0.701	5.128	10.288	2.504	2.857	1.376	4.396	4.274	6.302	4.299	5.132	5.953	4.887	7.662	5.782	3.361	8.428	2.273	1.645	2.080
12097	chr6	28813777	28824844	+	0	NA	intron (NM_019776, intron 16 of 23)	intron (NM_019776, intron 16 of 23)	12437	NM_138682	192198	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	5.757	1.793	0.928	2.185	2.646	1.589	6.538	8.397	3.175	3.886	3.421	1.754	6.590	6.299	5.774	7.802	5.241	nan	nan	1.416	0.875	2.638	1.570	1.115	4.001
9776	chr3	122432179	122435385	+	0	NA	intron (NM_013867, intron 2 of 11)	Charlie5|DNA|hAT-Charlie	14002	NM_013867	29815	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	3.661	0.972	0.420	5.731	2.552	1.185	2.258	2.068	2.148	nan	2.433	2.550	1.013	2.606	3.839	3.353	2.983	4.297	4.944	2.083	2.390	3.461	nan	4.617	nan
12282	chr6	65532383	65560072	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-44171	NM_001001495	414084	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	4.584	1.573	0.917	3.567	4.168	2.672	4.164	4.602	4.338	3.661	1.812	2.114	5.457	6.111	5.464	5.575	4.791	7.547	0.870	0.834	0.515	0.742	0.496	0.365	3.131
14643	chr8	119730027	119731346	+	0	NA	intron (NM_026922, intron 7 of 26)	RLTR20C2_MM|LTR|ERVK	30677	NM_026922	69047	Mm.46251	NM_026922	ENSMUSG00000034112	Atp2c2	1810010G06Rik|Spca2|mKIAA0703	ATPase, Ca++ transporting, type 2C, member 2	protein-coding	4.153	1.575	1.061	2.330	3.577	2.950	1.596	1.946	1.817	3.263	0.492	0.870	4.024	3.342	2.685	3.748	5.843	1.626	0.989	1.672	2.179	0.644	1.104	1.187	3.595
7150	chr18	36440056	36441885	+	0	NA	intron (NM_026027, intron 2 of 3)	intron (NM_026027, intron 2 of 3)	13525	NM_026027	67199	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	11.944	16.318	5.385	13.561	6.782	5.310	11.263	13.273	7.868	18.101	8.665	6.408	10.777	13.022	11.192	11.939	9.398	12.546	8.718	4.854	5.257	9.506	6.491	9.930	19.340
11773	chr5	134786897	134792281	+	0	NA	Intergenic	B4|SINE|B4	-42266	NM_007925	13717	Mm.275320	NM_007925	ENSMUSG00000029675	Eln	AI385707|AI480567|E030024M20Rik	elastin	protein-coding	8.629	7.401	3.736	7.279	4.998	3.618	9.459	6.168	5.025	9.480	6.215	3.289	6.493	10.325	8.477	7.894	7.061	6.696	3.777	3.233	3.752	3.676	nan	4.519	10.009
14990	chr9	42819880	42821233	+	0	NA	intron (NM_175481, intron 1 of 20)	MIR|SINE|MIR	123815	NM_175481	110637	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	2.877	0.791	0.301	1.552	1.506	0.272	1.549	3.090	2.011	2.020	2.861	1.563	2.552	3.203	1.696	2.262	2.478	2.264	nan	0.927	0.667	0.912	0.454	0.715	1.837
8890	chr2	157282194	157284348	+	0	NA	intron (NM_019642, intron 1 of 16)	intron (NM_019642, intron 1 of 16)	-3722	NM_001039557	629499	Mm.384235	NM_001039557	ENSMUSG00000074627	Mroh8	4922505G16Rik	maestro heat-like repeat family member 8	protein-coding	nan	3.471	0.838	4.352	1.943	1.328	4.249	3.822	nan	nan	2.418	1.783	2.896	3.900	5.121	6.804	3.121	5.570	nan	0.611	1.187	2.238	0.792	0.687	7.763
2913	chr11	106752181	106759986	+	0	NA	intron (NM_001271375, intron 3 of 6)	RSINE1|SINE|B4	4857	NM_001033435	380732	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	2.694	0.845	0.877	nan	3.720	2.814	3.133	2.840	nan	nan	2.449	1.784	4.589	4.943	3.900	3.612	5.065	3.656	0.990	1.199	0.802	nan	0.848	1.027	1.530
5138	chr15	38335770	38340611	+	0	NA	Intergenic	Intergenic	-37479	NM_001289471	21847	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	3.533	1.029	0.488	2.292	2.108	0.945	3.845	8.765	2.080	2.617	4.196	2.574	3.522	3.854	3.910	3.545	3.059	3.342	3.102	1.595	1.328	4.484	2.621	2.221	3.374
7206	chr18	42211922	42214968	+	0	NA	intron (NM_134137, intron 28 of 31)	intron (NM_134137, intron 28 of 31)	-16736	NM_027072	69401	Mm.34841	NM_027072	ENSMUSG00000059455	Plac8l1	1700009N18Rik|1700015M15Rik	PLAC8-like 1	protein-coding	6.403	1.039	0.427	2.990	2.864	1.259	5.110	4.952	3.671	3.927	7.767	2.846	5.294	7.385	6.171	7.047	4.413	6.813	1.124	0.805	0.596	1.297	1.280	0.657	8.020
15670	chrX	7829035	7830380	+	0	NA	intron (NM_008423, intron 1 of 5)	B1_Mur4|SINE|Alu	5948	NM_008423	16506	Mm.335968	NM_008423	ENSMUSG00000009731	Kcnd1	1110037K09Rik|Kca2-1|Kv4.1|Shal|Shal1|mShal1	potassium voltage-gated channel, Shal-related family, member 1	protein-coding	5.163	5.691	3.128	5.145	2.011	1.045	3.673	4.238	3.146	3.095	4.622	1.955	3.789	4.783	5.084	6.305	3.392	3.988	3.012	2.055	1.081	3.590	3.083	1.853	6.186
11322	chr5	67651202	67653608	+	0	NA	intron (NM_001284345, intron 30 of 36)	intron (NM_001284345, intron 30 of 36)	44522	NM_001033415	330096	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding	7.152	9.270	2.669	7.714	4.717	1.745	6.403	6.010	5.085	7.172	5.191	3.507	6.377	7.621	7.737	8.674	6.295	6.795	3.180	2.561	1.082	nan	3.001	2.563	8.299
8897	chr2	157936771	157943105	+	0	NA	intron (NM_198627, intron 3 of 3)	RSINE1|SINE|B4	25285	NM_198627	277432	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding	nan	1.295	0.594	3.245	1.889	1.072	5.333	6.769	nan	nan	1.680	2.096	5.500	4.661	5.529	6.934	5.060	4.953	nan	0.945	0.666	1.798	1.441	1.131	nan
10910	chr4	149744696	149751319	+	0	NA	intron (NM_027460, intron 6 of 6)	ORR1A0-int|LTR|ERVL-MaLR	-9939	NM_177672	230917	Mm.266704	NM_177672	ENSMUSG00000044700	Tmem201	AV028368|D4Ertd429e|Net5|Samp1	transmembrane protein 201	protein-coding	4.568	nan	0.782	3.104	3.672	2.152	3.376	3.572	3.768	5.864	2.069	1.629	4.271	6.181	3.873	5.441	3.344	5.152	8.756	2.529	1.695	8.069	12.266	9.065	4.799
3382	chr12	70572564	70578341	+	0	NA	intron (NR_037248, intron 4 of 4)	intron (NR_037248, intron 4 of 4)	122298	NM_028339	72736	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	8.463	9.984	4.711	6.085	6.924	4.244	7.892	6.163	7.479	10.793	5.844	3.775	8.866	12.787	9.871	10.600	8.528	8.419	2.946	4.457	3.763	5.506	2.540	2.554	13.085
1896	chr11	3799999	3806525	+	0	NA	intron (NM_152818, intron 2 of 13)	intron (NM_152818, intron 2 of 13)	60641	NM_152818	74309	Mm.61022	NM_152818	ENSMUSG00000020435	Osbp2	1700095P05Rik|C630001G20Rik|Gm244|ORP-4|OSBPL1	oxysterol binding protein 2	protein-coding	3.630	0.734	0.573	3.069	3.017	2.105	3.244	5.451	2.807	2.953	4.034	2.041	4.086	4.975	3.410	3.802	3.719	3.843	0.759	nan	0.807	0.889	0.552	0.613	3.229
5985	chr16	30963905	30965996	+	0	NA	intron (NM_198626, intron 3 of 3)	intron (NM_198626, intron 3 of 3)	116482	NM_198626	268880	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	3.021	1.344	0.807	1.415	1.198	0.930	4.488	5.842	1.471	3.030	1.845	0.453	4.444	6.298	2.540	6.220	3.515	4.740	1.045	0.851	0.552	0.984	nan	0.747	8.007
2895	chr11	106164255	106172111	+	0	NA	intron (NM_001252448, intron 9 of 12)	intron (NM_001252448, intron 9 of 12)	-8041	NM_172397	67803	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.779	12.555	7.176	nan	0.621	0.609	0.453	0.853	nan	nan	0.631	0.590	0.497	nan	0.863	0.974	0.633	nan	0.686	1.218	1.219	nan	0.592	0.462	0.734
12157	chr6	35448561	35451420	+	0	NA	Intergenic	L1Md_T|LINE|L1	89898	NM_008098	14489	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	3.960	0.488	0.505	2.497	2.699	1.106	7.501	5.636	3.282	3.156	2.790	1.268	5.822	6.292	4.746	nan	7.208	nan	nan	0.951	0.511	nan	nan	0.369	nan
1042	chr1	193959940	193963024	+	0	NA	Intergenic	L1MA6|LINE|L1	261277	NR_040477	74942	Mm.60689	NR_040477	ENSMUSG00000103692	4930503O07Rik	-	RIKEN cDNA 4930503O07 gene	ncRNA	11.206	8.244	2.494	8.972	4.455	3.997	9.227	7.785	4.965	13.844	7.200	3.441	8.791	11.186	8.252	14.559	8.832	8.887	6.568	2.653	5.116	7.003	5.392	7.963	18.004
9028	chr2	167577628	167581650	+	0	NA	Intergenic	PB1D7|SINE|Alu	41444	NM_011427	20613	Mm.2093	NM_011427	ENSMUSG00000042821	Snai1	Sna|Sna1|Snail|Snail1	snail family zinc finger 1	protein-coding	6.012	4.403	1.828	5.179	3.281	1.881	1.484	2.548	2.425	3.666	3.162	1.111	1.453	nan	2.519	3.240	1.502	nan	nan	2.348	2.226	3.831	1.192	1.134	4.678
7616	chr19	18840011	18842990	+	0	NA	intron (NM_153417, intron 25 of 38)	intron (NM_153417, intron 25 of 38)	91517	NM_153417	225997	Mm.215171	NM_153417	ENSMUSG00000024727	Trpm6	CHAK2|TRPM6/CHAK2	transient receptor potential cation channel, subfamily M, member 6	protein-coding	4.292	0.720	0.219	3.541	4.151	2.436	3.811	1.863	3.543	4.143	1.977	1.567	5.157	5.763	3.018	5.993	4.633	6.035	0.475	0.422	0.249	0.333	0.359	0.257	5.762
13365	chr7	87301032	87302905	+	0	NA	intron (NM_015760, intron 4 of 17)	L1Md_A|LINE|L1	55319	NM_001285833	50490	Mm.31748	NM_015760	ENSMUSG00000030562	Nox4	AI648021	NADPH oxidase 4	protein-coding	2.597	1.640	1.070	2.258	2.807	2.179	3.837	7.078	nan	3.366	4.345	4.846	3.546	4.706	3.261	nan	3.771	nan	1.519	1.489	1.498	nan	2.670	1.865	nan
38	chr1	17559135	17562386	+	0	NA	Intergenic	Intergenic	-41141	NM_053191	94227	Mm.442452	NM_053191	ENSMUSG00000067780	Pi15	P24TI|P25TI|PI-15|SugarCrisp	peptidase inhibitor 15	protein-coding	nan	0.545	0.357	1.193	0.392	0.166	0.347	0.318	0.842	0.561	6.209	0.897	0.375	0.482	0.466	0.809	0.862	0.790	0.802	0.445	0.380	0.454	0.277	0.349	0.357
3874	chr13	21801542	21802866	+	0	NA	Intergenic	Intergenic	7995	NM_001313878	665622	Mm.471247	NM_001110555	ENSMUSG00000069303	Hist1h2br	Gm11277|OTTMUSG00000000449	histone cluster 1 H2br	protein-coding	3.622	5.304	2.209	4.113	2.306	0.776	2.849	2.415	3.800	3.248	3.120	2.177	3.711	5.509	4.410	4.300	3.819	3.263	2.975	1.601	0.841	2.349	0.810	0.665	3.301
196	chr1	56867833	56870794	+	0	NA	intron (NM_139146, intron 7 of 10)	intron (NM_139146, intron 7 of 10)	102021	NM_139146	212712	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	4.553	0.847	0.437	0.523	0.630	0.165	4.621	5.469	2.063	1.304	0.823	0.735	6.008	1.800	4.138	nan	3.888	3.827	0.897	0.408	0.127	0.874	1.515	0.770	2.142
7693	chr19	29964205	29969724	+	0	NA	Intergenic	ID4_|SINE|ID	21174	NM_001164724	77125	Mm.182359	NM_133775	ENSMUSG00000024810	Il33	9230117N10Rik|Il-33|Il1f11|NF-HEV	interleukin 33	protein-coding	nan	0.511	0.466	nan	1.482	1.104	1.692	nan	1.988	1.363	9.695	4.869	1.289	1.694	1.111	1.521	2.225	1.593	nan	0.368	0.466	0.273	nan	0.200	1.001
13619	chr7	119470775	119473187	+	0	NA	intron (NM_009470, intron 5 of 10)	intron (NM_009470, intron 5 of 10)	7281	NM_009470	22242	Mm.10826	NM_009470	ENSMUSG00000030963	Umod	THP|Urehd1|urehr4	uromodulin	protein-coding	1.804	0.639	0.574	3.614	2.775	1.418	1.665	1.314	2.749	3.415	0.517	0.508	2.091	3.767	2.810	3.426	2.167	3.675	1.429	0.750	0.456	0.866	1.841	0.910	3.025
1169	chr10	21711257	21720339	+	0	NA	Intergenic	Intergenic	24953	NR_045843	432436	Mm.244553	NM_001004162		Gm5420	EG432436	predicted gene 5420	ncRNA	6.190	6.849	2.311	6.679	2.384	1.287	1.827	2.425	nan	7.400	6.230	5.533	2.667	4.538	3.460	3.882	2.408	5.127	1.345	0.999	0.594	1.908	0.563	0.708	nan
5669	chr15	100217653	100219847	+	0	NA	3' UTR (NM_172819, exon 33 of 33)	3' UTR (NM_172819, exon 33 of 33)	-9109	NM_007497	11908	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	2.333	1.247	0.918	4.015	2.693	1.546	7.220	7.640	2.874	1.888	1.097	1.585	11.224	11.003	9.220	3.025	8.622	2.871	0.772	0.476	0.564	0.797	1.418	2.032	6.418
118	chr1	38683147	38685587	+	0	NA	Intergenic	L1M5|LINE|L1	-57123	NM_001290814	16764	Mm.336679	NM_010678	ENSMUSG00000037138	Aff3	3222402O04Rik|A730046J16|LAF-4|Laf4	AF4/FMR2 family, member 3	protein-coding	1.302	1.457	0.475	6.249	0.624	0.602	0.407	0.336	1.081	2.057	0.426	0.327	0.339	0.552	0.869	nan	0.308	2.566	2.530	0.906	1.859	2.882	2.638	5.747	1.636
3816	chr13	4769606	4772153	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-161715	NM_018859	56043	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	7.439	1.500	0.742	5.058	5.224	2.769	4.566	5.974	6.696	6.076	3.156	3.324	6.675	7.542	7.320	6.956	4.334	7.219	1.726	0.778	0.495	2.183	1.068	0.905	3.938
10157	chr4	62305779	62308520	+	0	NA	intron (NM_001045528, intron 22 of 27)	intron (NM_001045528, intron 22 of 27)	15602	NM_001290518	20530	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	3.840	1.861	0.888	3.581	2.634	1.202	3.265	5.381	3.892	4.237	2.326	1.787	4.410	5.697	4.846	5.240	2.361	5.302	6.750	2.391	1.483	7.631	3.067	2.667	6.683
9682	chr3	107560647	107563686	+	0	NA	Intergenic	Intergenic	-7093	NM_026261	67591	Mm.55982	NM_026261	ENSMUSG00000055891	Ubl4b	4930522D07Rik	ubiquitin-like 4B	protein-coding	4.562	7.396	3.443	5.580	2.652	2.262	2.057	1.703	1.792	3.644	4.478	2.236	1.124	2.291	nan	2.413	1.386	3.437	3.201	4.068	3.496	3.926	5.236	4.733	3.593
8516	chr2	110031594	110033654	+	0	NA	intron (NM_026613, intron 3 of 5)	RMER4B|LTR|ERVK	14807	NM_026613	68201	Mm.181767	NM_026613	ENSMUSG00000027160	Ccdc34	2810027O19Rik|4930522P10Rik|AI596202	coiled-coil domain containing 34	protein-coding	0.558	0.594	0.316	0.518	0.146	0.230	0.507	1.395	1.020	0.581	5.384	3.130	0.422	0.772	0.547	0.708	0.598	0.551	0.454	0.670	0.170	nan	0.294	0.305	0.649
8492	chr2	102910230	102914345	+	0	NA	Intergenic	Intergenic	-10622	NM_001039150	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	4.877	8.140	5.065	4.411	1.906	0.880	2.326	3.908	2.826	3.315	2.243	1.180	2.934	3.742	3.313	4.685	3.575	4.071	1.912	1.210	0.709	2.161	1.370	1.153	nan
4872	chr14	77131008	77134345	+	0	NA	Intergenic	Intergenic	-24087	NM_001253759	239188	Mm.441158	NM_172813	ENSMUSG00000022012	Enox1	B230207J08|D230005D02Rik	ecto-NOX disulfide-thiol exchanger 1	protein-coding	3.117	0.765	0.272	3.278	3.205	1.586	5.620	8.328	4.332	5.204	2.599	1.765	4.939	5.261	8.204	8.163	3.975	5.758	3.762	1.256	1.071	3.705	3.191	2.295	4.755
12215	chr6	49098140	49099948	+	0	NA	intron (NM_023670, intron 10 of 14)	intron (NM_023670, intron 10 of 14)	25249	NM_029353	75593	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	1.993	0.721	0.504	0.575	0.469	0.206	4.688	5.266	0.796	0.968	0.708	0.657	5.961	4.728	4.339	4.728	3.507	2.223	nan	0.432	0.271	0.265	0.240	0.314	1.255
1659	chr10	95742222	95743771	+	0	NA	Intergenic	MTB|LTR|ERVL-MaLR	-178829	NM_027722	71207	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	5.388	1.745	0.517	3.401	1.141	0.452	1.942	1.528	3.266	3.967	nan	1.130	1.868	3.056	2.436	2.593	1.443	2.982	nan	0.749	0.332	1.000	0.874	0.485	2.877
15794	chrX	103103907	103108584	+	0	NA	Intergenic	L1Md_F3|LINE|L1	80419	NM_008671	17954	Mm.388694	NM_008671	ENSMUSG00000082229	Nap1l2	Bpx	nucleosome assembly protein 1-like 2	protein-coding	2.964	0.951	1.070	2.525	3.228	2.056	2.460	1.705	3.689	3.463	1.121	0.798	3.931	3.971	2.074	2.646	2.545	3.222	0.972	0.698	0.691	0.559	0.482	0.424	2.451
767	chr1	157013224	157018623	+	0	NA	Intergenic	Intergenic	-76297	NM_023884	78255	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	5.059	0.804	0.831	2.609	2.729	1.660	3.363	1.698	nan	3.692	2.164	0.979	5.557	5.055	3.162	5.902	5.427	4.260	nan	0.942	0.930	0.980	nan	0.781	5.521
6638	chr17	44362281	44369111	+	0	NA	Intergenic	Intergenic	177124	NM_172621	224796	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg	chloride intracellular channel 5	protein-coding	4.315	0.600	0.498	4.038	5.020	3.674	1.976	1.996	2.894	3.019	0.959	0.764	2.130	5.051	2.510	3.735	nan	4.317	0.612	0.897	0.673	0.532	0.506	0.516	3.607
13382	chr7	87888931	87890598	+	0	NA	intron (NM_001143834, intron 4 of 10)	intron (NM_001143834, intron 4 of 10)	305596	NM_001143834	108071	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	2.542	1.041	0.844	2.963	2.745	2.248	2.723	4.350	nan	3.350	1.735	1.819	5.346	3.627	4.574	3.840	2.278	5.084	2.808	1.414	1.838	2.996	2.108	2.620	4.923
805	chr1	163480711	163481709	+	0	NA	Intergenic	Intergenic	-77541	NM_178883	98376	Mm.32901	NM_178883	ENSMUSG00000040124	Gorab	NTKL-BP1|SCYL1-BP1|Scyl1bp1	golgin, RAB6-interacting	protein-coding	2.785	0.606	0.406	1.754	1.162	0.340	1.019	1.769	nan	2.340	1.513	1.028	4.312	3.345	3.148	4.314	3.398	3.053	0.318	0.497	0.244	nan	nan	0.067	1.391
1020	chr1	191959486	191967869	+	0	NA	Intergenic	Intergenic	-13693	NM_001177900	74023	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding	0.385	0.389	0.177	0.320	0.078	0.038	0.448	0.575	0.282	0.259	0.190	0.074	0.242	0.179	0.354	nan	0.350	0.438	4.287	1.589	0.836	5.710	1.981	1.303	0.497
2173	chr11	51811696	51815126	+	0	NA	TTS (NM_199299)	TTS (NM_199299)	44070	NM_199299	76901	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	8.372	10.795	3.599	10.266	7.151	4.590	6.383	8.570	5.792	9.186	6.532	3.902	8.392	10.322	9.466	10.287	6.663	9.225	nan	3.274	3.818	5.711	nan	4.031	10.177
6287	chr17	3081527	3083395	+	0	NA	intron (NR_003519, intron 1 of 7)	intron (NR_003519, intron 1 of 7)	1722	NR_003519	328734	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	15.136	17.071	9.901	17.228	12.054	9.907	10.245	18.237	12.388	15.909	7.130	6.401	12.459	14.918	13.131	17.527	23.711	15.993	11.952	11.099	12.092	10.087	9.934	10.552	20.593
14835	chr8	130943060	130944307	+	0	NA	Intergenic	Intergenic	1680053	NR_144501	102635552		NM_001346808		Gm32856	-	predicted gene, 32856	protein-coding	3.860	1.645	0.504	2.020	4.036	2.603	nan	1.034	2.225	3.449	1.158	0.346	2.225	3.524	1.574	3.815	3.720	1.990	nan	1.995	1.009	nan	2.101	nan	1.972
5707	chr15	101804396	101815396	+	0	NA	TTS (NM_010668)	TTS (NM_010668)	-7564	NM_212485	223915	Mm.291498	NM_212485	ENSMUSG00000063661	Krt73	BC067067|Kb36	keratin 73	protein-coding	5.991	3.217	1.533	3.899	3.100	1.630	7.002	9.948	3.594	3.531	10.120	6.028	6.894	5.832	5.398	6.570	5.032	5.356	2.165	1.939	1.931	1.940	2.200	1.707	5.789
10783	chr4	138684956	138687686	+	0	NA	Intergenic	Intergenic	38535	NM_001285930	212190	Mm.292226	NM_178671	ENSMUSG00000043621	Ubxn10	5730509E04Rik|A830047D02|Ubxd3	UBX domain protein 10	protein-coding	4.824	7.335	2.559	7.313	4.425	4.148	4.673	3.955	nan	7.962	3.582	2.433	3.634	5.458	4.552	5.711	3.577	nan	4.939	3.229	4.054	6.952	nan	5.445	9.256
194	chr1	55282215	55285595	+	0	NA	Intergenic	MTE-int|LTR|ERVL-MaLR	46728	NM_175439	212679	Mm.19223	NM_175439	ENSMUSG00000046994	Mars2	C730026E21Rik|MetRS	methionine-tRNA synthetase 2 (mitochondrial)	protein-coding	4.602	0.809	0.540	5.325	4.841	3.268	2.121	1.751	2.950	3.791	2.145	1.708	5.245	4.125	3.728	nan	2.433	4.340	1.218	1.247	1.100	0.675	0.540	0.569	4.725
3503	chr12	81045470	81047144	+	0	NA	intron (NM_022316, intron 1 of 12)	ORR1F|LTR|ERVL-MaLR	19499	NM_022316	64075	Mm.273295	NM_022316	ENSMUSG00000021136	Smoc1	2600002F22Rik|AI848508|SRG	SPARC related modular calcium binding 1	protein-coding	8.997	3.583	1.367	4.976	2.742	1.100	5.739	4.298	2.967	4.255	3.092	2.787	3.177	4.829	5.031	5.812	4.723	4.648	1.187	1.339	0.881	1.580	1.635	0.691	8.166
8014	chr2	25064991	25067263	+	0	NA	Intergenic	B3A|SINE|B2	6316	NR_106124	102465989		NR_106124	ENSMUSG00000099320	Mir7664	Gm28015|mmu-mir-7664	microRNA 7664	ncRNA	7.023	8.868	2.428	8.383	3.083	1.866	7.671	8.910	3.705	6.072	4.218	2.875	6.443	7.090	7.580	9.848	6.361	7.145	3.354	1.392	2.582	4.394	1.595	2.624	13.576
9478	chr3	89689657	89694446	+	0	NA	Intergenic	Intergenic	-22971	NM_001038587	56417	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	0.950	3.305	1.234	1.445	0.342	0.263	1.025	1.444	0.785	0.841	0.927	1.552	0.595	0.822	0.957	nan	0.671	1.258	nan	1.434	0.881	5.870	1.626	1.305	0.934
8499	chr2	103186958	103189293	+	0	NA	Intergenic	Intergenic	114450	NM_019735	56369	Mm.24772	NM_019735	ENSMUSG00000010911	Apip	APIP2|CGI-29|Mmrp19	APAF1 interacting protein	protein-coding	4.367	0.913	0.336	1.868	1.603	0.245	2.676	6.179	2.187	2.545	6.623	1.589	3.511	3.516	3.663	4.545	4.110	3.270	1.005	0.613	0.795	nan	1.239	0.440	4.836
6501	chr17	29428860	29435522	+	0	NA	Intergenic	MIRb|SINE|MIR	-58854	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	2.239	1.059	0.512	2.314	2.116	1.835	3.972	4.001	2.220	2.241	0.777	0.662	3.580	6.394	4.521	5.588	3.956	3.186	1.154	0.782	0.861	1.189	1.211	1.106	5.517
10037	chr4	45418311	45428743	+	0	NA	3' UTR (NM_001033306, exon 6 of 6)	3' UTR (NM_001033306, exon 6 of 6)	-14761	NM_001009949	230125	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	6.554	nan	0.859	5.417	6.947	4.725	5.820	6.952	5.692	8.336	3.119	2.554	5.225	8.492	5.974	7.227	5.255	nan	2.646	1.631	1.269	nan	1.503	1.807	6.438
7888	chr19	55497821	55499306	+	0	NA	exon (NM_016862, exon 6 of 8)	exon (NM_016862, exon 6 of 8)	182506	NM_001293686	53611	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	2.409	nan	0.506	2.060	1.620	0.943	5.328	7.093	2.299	2.504	2.750	2.020	3.156	3.853	3.603	3.683	3.098	3.285	1.045	0.413	0.378	1.505	0.880	0.449	3.113
14113	chr8	28370005	28372360	+	0	NA	Intergenic	Intergenic	-286329	NR_033590	666422	Mm.484413	NR_033590	ENSMUSG00000110372	Gm8096	EG666422	3-phosphoglycerate dehydrogenase pseudogene	pseudo	7.450	7.106	2.933	7.708	2.918	1.728	6.123	11.746	3.662	5.553	5.319	2.446	7.323	7.056	6.843	9.849	6.266	5.562	1.411	2.090	2.206	3.665	1.486	1.544	11.300
2395	chr11	70033819	70038268	+	0	NA	intron (NM_001109752, intron 8 of 19)	B1_Mur4|SINE|Alu	17438	NM_007864	13385	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs, large homolog 4 (Drosophila)	protein-coding	5.900	3.128	1.234	7.834	2.796	2.088	4.267	4.821	3.542	4.379	2.997	2.902	4.054	5.608	5.293	6.813	4.548	5.895	3.341	3.236	2.326	3.917	nan	1.902	nan
4129	chr13	51996820	52008926	+	0	NA	Intergenic	RSINE1|SINE|B4	-93868	NR_045061	74050	Mm.84860	NR_045061		4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	5.254	1.000	0.418	nan	4.182	2.433	4.282	6.975	4.974	7.171	3.460	1.682	4.996	8.870	4.810	5.785	3.264	nan	1.699	nan	0.986	2.473	1.326	1.229	6.208
8514	chr2	107072359	107074449	+	0	NA	Intergenic	Intergenic	-13753	NM_008045	14308	Mm.249525	NM_008045	ENSMUSG00000027120	Fshb	FSH|FSH-B|FSH-beta|Fshbeta	follicle stimulating hormone beta	protein-coding	0.797	0.518	0.413	0.900	0.351	0.100	0.438	0.987	0.396	0.682	5.441	1.782	0.307	0.492	0.420	0.446	0.909	0.552	0.459	0.573	0.302	nan	0.545	0.162	0.266
10759	chr4	137632908	137642292	+	0	NA	intron (NM_130879, intron 20 of 27)	intron (NM_130879, intron 20 of 27)	-27126	NM_029563	110351	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	nan	0.842	0.401	1.124	0.885	0.524	0.513	0.874	nan	0.824	0.567	0.429	0.507	0.916	0.826	0.962	0.515	nan	5.293	2.298	1.611	6.297	nan	2.252	1.557
4937	chr14	104047829	104053653	+	0	NA	Intergenic	Intergenic	-23599	NR_045953	73877	Mm.399172	NR_045953		4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	2.079	8.017	3.686	2.422	1.698	0.969	1.777	0.965	1.559	3.260	0.390	0.520	1.837	2.313	3.473	2.802	1.781	2.380	4.712	2.861	2.197	5.946	4.989	5.288	5.152
15608	chr9	121239589	121242353	+	0	NA	intron (NM_177589, intron 17 of 36)	intron (NM_177589, intron 17 of 36)	36201	NM_177589	209012	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	4.139	2.617	2.159	3.325	2.473	2.393	2.466	1.637	2.370	2.645	3.389	1.213	1.358	2.215	1.664	2.146	1.871	2.042	1.652	3.196	4.101	1.594	nan	1.526	2.060
14878	chr9	20317377	20326786	+	0	NA	intron (NM_146563, intron 1 of 1)	L1Md_A|LINE|L1	14013	NM_146563	18315	Mm.246524	NM_146563	ENSMUSG00000066896	Olfr18	MOR145-1|MTPCR34	olfactory receptor 18	protein-coding	5.405	2.821	1.234	3.680	2.820	1.511	4.248	3.010	4.630	6.382	2.409	1.598	4.847	6.546	4.419	6.555	3.906	7.426	1.865	1.747	1.513	2.081	2.204	1.834	7.938
13561	chr7	116779117	116782269	+	0	NA	Intergenic	Intergenic	276324	NM_001130479	53322	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	6.030	1.282	0.696	6.465	5.547	2.414	2.828	4.458	3.203	2.998	7.143	2.277	3.715	5.414	4.089	3.496	2.544	5.555	1.680	1.075	0.934	1.878	1.225	0.913	4.620
1989	chr11	16490825	16492613	+	0	NA	Intergenic	Lx9|LINE|L1	16765	NM_011343	20335	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	1.466	1.830	0.766	2.210	0.753	0.589	0.710	1.619	1.468	1.168	5.433	4.188	0.600	1.434	1.002	0.918	0.586	nan	2.051	2.385	0.902	3.253	1.357	1.002	0.634
12924	chr7	16538752	16553328	+	0	NA	intron (NM_172739, intron 3 of 6)	intron (NM_172739, intron 3 of 6)	-67784	NR_136928	102634559	Mm.421602	NR_136928	ENSMUSG00000100583	Gm29443	-	predicted gene 29443	ncRNA	6.447	2.521	1.175	5.639	5.703	3.107	8.324	4.165	4.016	5.720	3.864	1.785	5.842	9.460	5.230	5.880	5.374	6.337	0.886	2.116	1.527	1.181	1.230	0.954	7.686
12129	chr6	31289066	31290473	+	0	NA	intron (NR_040261, intron 3 of 4)	GA-rich|Low_complexity|Low_complexity	69418	NR_040261	73652	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	4.099	0.896	0.568	2.471	3.278	1.740	8.396	5.811	2.513	3.146	1.505	0.858	5.475	4.818	8.142	8.328	4.258	4.102	nan	1.128	0.893	3.400	1.914	1.145	7.300
8905	chr2	158234721	158237153	+	0	NA	Intergenic	(TGGA)n|Simple_repeat|Simple_repeat	-6713	NM_177657	228846	Mm.187574	NM_177657	ENSMUSG00000037813	D630003M21Rik	-	RIKEN cDNA D630003M21 gene	protein-coding	nan	6.398	2.440	7.835	2.108	1.551	4.182	5.761	4.231	8.439	3.534	2.661	5.305	6.510	6.720	10.021	5.954	7.707	nan	1.019	1.418	4.217	1.458	1.994	11.829
5797	chr16	11131903	11136489	+	0	NA	intron (NM_029582, intron 1 of 11)	CpG	336	NM_029582	106200	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	6.970	8.806	3.475	7.561	3.447	2.551	5.096	8.643	5.296	9.048	4.155	2.538	8.025	10.286	7.791	9.665	5.655	7.685	5.552	2.872	2.365	5.255	3.595	3.220	8.434
14747	chr8	125657990	125661567	+	0	NA	Intergenic	B3|SINE|B2	-10040	NM_028908	74393	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	1.052	nan	0.339	nan	0.557	0.481	nan	nan	0.737	0.836	1.366	0.687	0.430	0.784	nan	1.269	0.601	nan	6.982	3.373	3.124	12.996	4.464	nan	nan
4035	chr13	42331564	42335756	+	0	NA	Intergenic	Intergenic	32184	NM_010104	13614	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	4.312	nan	0.371	2.023	4.132	2.574	nan	3.794	3.188	3.719	0.761	0.775	3.936	5.795	4.373	5.734	3.306	nan	0.683	0.593	0.556	0.483	0.586	0.407	nan
12136	chr6	32333709	32344253	+	0	NA	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-172160	NR_040277	319849	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	2.524	0.559	0.516	1.733	2.219	0.899	4.339	2.533	2.739	3.293	0.507	0.490	4.064	5.868	3.704	nan	4.132	nan	nan	0.546	0.350	0.504	0.752	0.279	2.885
10592	chr4	130761628	130763527	+	0	NA	intron (NM_001159606, intron 10 of 17)	intron (NM_001159606, intron 10 of 17)	12939	NR_028565	100217460		NR_028565	ENSMUSG00000065196	Snord85	MBII-251|Z50	small nucleolar RNA, C/D box 85	snoRNA	1.188	1.003	0.258	0.221	0.151	0.066	3.283	0.789	1.521	1.874	0.315	0.203	1.369	1.349	nan	2.511	0.164	0.975	4.637	5.114	3.638	3.963	6.716	4.556	2.262
13623	chr7	119638392	119647397	+	0	NA	intron (NM_054094, intron 6 of 13)	RLTR33|LTR|ERVK	25066	NM_054094	117147	Mm.427560	NM_054094	ENSMUSG00000033533	Acsm1	Acas3|Bucs1|Macs	acyl-CoA synthetase medium-chain family member 1	protein-coding	3.513	1.360	0.992	2.425	3.136	2.020	4.410	9.385	2.297	2.704	2.374	3.001	5.088	4.146	3.786	3.380	4.821	3.217	2.762	1.663	1.325	2.555	1.952	1.676	2.424
4120	chr13	51731853	51733161	+	0	NA	intron (NM_013660, intron 2 of 15)	intron (NM_013660, intron 2 of 15)	61240	NM_001281880	20354	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	nan	0.824	0.352	nan	1.709	1.469	3.500	2.383	0.875	1.255	1.423	1.164	2.235	4.327	2.480	1.765	2.481	nan	0.929	nan	0.464	0.662	1.878	1.555	nan
5955	chr16	25953180	25955904	+	0	NA	Intergenic	Intergenic	151242	NM_173379	210530	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	4.723	0.626	0.413	1.124	1.746	0.673	7.125	5.057	2.858	2.477	3.227	1.301	5.377	7.660	5.456	8.237	4.167	3.975	0.793	0.885	0.060	0.970	nan	0.242	7.198
6119	chr16	52134976	52137117	+	0	NA	intron (NM_001033238, intron 6 of 17)	intron (NM_001033238, intron 6 of 17)	104497	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	5.206	0.893	0.382	6.346	5.384	2.382	2.306	3.832	5.532	7.073	2.646	4.150	5.243	6.727	3.313	3.135	2.005	8.748	0.870	0.926	0.401	0.848	0.929	0.397	2.289
2160	chr11	51396565	51399259	+	0	NA	intron (NM_153393, intron 2 of 28)	T-rich|Low_complexity|Low_complexity	107992	NM_153393	237759	Mm.154093	NM_153393	ENSMUSG00000063564	Col23a1	2810458L13Rik|AI429655	collagen, type XXIII, alpha 1	protein-coding	8.837	10.781	2.275	11.289	3.268	1.339	6.100	6.513	6.521	7.910	9.087	4.299	7.074	8.570	10.500	11.591	5.309	11.075	nan	1.896	2.548	8.226	nan	1.985	12.130
14713	chr8	124420379	124426982	+	0	NA	intron (NM_171824, intron 1 of 6)	MTE2b|LTR|ERVL-MaLR	10256	NM_171824	209966	Mm.234233	NM_171824	ENSMUSG00000050751	Pgbd5	2900019M05Rik|AI854313	piggyBac transposable element derived 5	protein-coding	3.332	nan	0.610	nan	1.810	1.159	nan	nan	2.305	3.209	2.100	1.756	3.925	4.369	nan	4.986	2.480	nan	nan	1.136	1.165	6.273	1.750	nan	nan
3785	chr12	114460497	114472990	+	0	NA	Intergenic	RLTR40|LTR|ERVK	2723	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	nan	14.896	9.692	1.257	0.514	0.442	0.313	0.421	0.387	0.635	0.278	0.235	0.218	0.353	0.464	nan	0.701	0.289	0.419	1.957	1.221	0.300	0.496	0.341	nan
5228	chr15	59469674	59471026	+	0	NA	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	96152	NM_001164604	68501	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	3.559	0.808	0.195	nan	1.697	0.370	4.242	3.073	nan	2.865	2.070	0.893	4.883	4.664	3.844	2.662	1.901	3.045	2.039	1.233	0.939	1.866	1.419	0.954	5.157
8089	chr2	30512505	30516072	+	0	NA	Intergenic	B3A|SINE|B2	-40089	NM_030244	72500	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	7.955	10.088	3.255	11.319	3.215	1.770	6.877	8.598	nan	8.119	6.215	4.902	7.961	7.089	9.246	9.195	7.049	8.626	8.796	4.119	3.550	11.657	5.206	4.424	12.799
10967	chr4	153395662	153400780	+	0	NA	intron (NM_001099299, intron 2 of 5)	B4|SINE|B4	84609	NM_001099299	230959	Mm.318874	NM_001099299	ENSMUSG00000039546	Ajap1	Gm573	adherens junction associated protein 1	protein-coding	4.519	1.183	0.153	6.263	2.287	1.334	3.788	6.097	3.123	4.906	1.255	1.033	4.800	7.040	4.102	7.078	2.567	7.074	2.303	0.401	0.715	2.411	0.769	0.717	8.057
2450	chr11	74651063	74652994	+	0	NA	intron (NM_001081158, intron 1 of 25)	intron (NM_001081158, intron 1 of 25)	2533	NM_001081158	74148	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	12.373	13.115	4.119	12.620	6.197	2.404	9.145	10.921	6.999	12.342	9.048	3.274	9.792	14.363	8.024	13.189	8.597	9.960	5.491	3.435	nan	6.202	2.529	2.035	13.257
1398	chr10	68813686	68816089	+	0	NA	Intergenic	L1Md_T|LINE|L1	91141	NM_177794	327766	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	3.000	10.747	3.173	1.761	1.250	0.677	2.250	1.851	1.932	1.906	3.308	1.820	2.240	1.875	4.472	4.425	2.932	3.430	4.772	2.266	2.891	5.722	3.723	3.588	6.434
6639	chr17	44369308	44379903	+	0	NA	Intergenic	ORR1F|LTR|ERVL-MaLR	186033	NM_172621	224796	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg	chloride intracellular channel 5	protein-coding	4.923	1.005	0.454	5.294	3.304	1.818	4.858	3.263	4.241	4.864	2.020	1.406	4.656	6.798	6.193	7.096	nan	8.010	0.668	0.870	0.532	0.843	0.432	0.171	7.098
3986	chr13	37756540	37760653	+	0	NA	Intergenic	RMER4B|LTR|ERVK	-67442	NM_026830	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	8.086	nan	0.790	4.851	5.206	2.213	nan	6.259	nan	8.371	6.286	4.168	5.300	8.324	6.089	nan	4.099	8.000	1.161	1.945	1.283	3.106	1.382	0.914	8.452
5677	chr15	100462362	100468157	+	0	NA	Intergenic	MTE2a|LTR|ERVL-MaLR	-3775	NM_134093	68614	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	5.677	12.790	5.712	6.491	3.385	2.031	6.529	12.849	5.048	6.935	3.762	3.770	7.310	6.695	7.375	6.300	6.793	6.674	2.423	1.981	2.031	3.512	1.892	1.562	9.566
8122	chr2	32014171	32015706	+	0	NA	intron (NM_172268, intron 21 of 35)	intron (NM_172268, intron 21 of 35)	-36008	NR_106135	102466844		NR_106135	ENSMUSG00000099075	Mir7674	Gm27563|mmu-mir-7674	microRNA 7674	ncRNA	3.191	2.608	0.808	3.878	2.034	1.342	2.148	4.278	nan	2.565	3.227	2.033	2.418	3.163	2.821	4.662	2.453	3.321	2.354	1.301	1.210	1.913	1.607	1.722	5.191
11158	chr5	34861549	34864124	+	0	NA	intron (NM_010414, intron 37 of 66)	L1Md_F|LINE|L1	-53079	NM_207277	403174	Mm.291225	NM_207277	ENSMUSG00000051246	Msantd1	A930005I04Rik|Gm144	Myb/SANT-like DNA-binding domain containing 1	protein-coding	3.104	15.233	7.772	2.257	1.195	1.099	1.103	1.113	1.451	1.891	1.233	1.087	0.797	2.210	nan	1.799	nan	1.740	0.932	1.450	1.676	0.932	0.533	0.408	2.206
527	chr1	121562688	121564989	+	0	NA	intron (NM_025860, intron 3 of 12)	intron (NM_025860, intron 3 of 12)	4142	NM_025860	66942	Mm.44219	NM_025860	ENSMUSG00000001674	Ddx18	2310005B10Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding	4.395	0.503	0.556	1.669	1.457	0.730	2.814	2.644	2.342	2.273	0.810	0.519	3.310	4.023	2.097	3.700	4.708	2.464	1.492	0.929	0.882	0.663	1.236	0.675	1.643
1870	chr10	128062477	128064230	+	0	NA	intron (NM_019766, intron 1 of 7)	MER119|DNA|hAT-Charlie	4371	NM_019766	56351	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3 (cytosolic)	protein-coding	10.175	12.356	4.428	8.379	4.640	2.685	6.291	6.241	7.168	6.786	7.236	3.912	7.147	8.345	8.430	8.972	7.519	9.503	6.462	3.459	2.225	6.111	nan	3.350	10.588
14048	chr8	13622886	13626030	+	0	NA	intron (NM_009025, intron 2 of 23)	intron (NM_009025, intron 2 of 23)	53129	NM_009025	19414	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	4.138	6.266	1.540	7.224	1.843	1.097	2.105	4.060	3.500	3.621	4.433	3.356	1.906	3.018	2.889	3.364	1.425	3.823	2.961	2.041	1.183	7.572	0.903	0.826	4.071
10777	chr4	138493157	138500577	+	0	NA	Intergenic	Intergenic	41719	NM_025451	66259	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding	6.956	1.095	0.876	5.683	6.111	3.369	7.400	3.253	nan	7.706	2.924	3.751	7.855	7.977	5.792	8.153	5.491	nan	5.697	3.454	2.654	7.599	nan	4.132	9.202
10089	chr4	53498788	53502311	+	0	NA	intron (NM_133891, intron 3 of 15)	intron (NM_133891, intron 3 of 15)	60136	NM_133891	100434	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	4.279	nan	0.460	2.007	1.716	0.643	nan	5.273	3.198	3.501	1.213	1.485	5.430	7.516	4.273	5.053	4.212	2.909	nan	1.594	0.788	1.380	0.942	0.659	4.293
5214	chr15	59028873	59030583	+	0	NA	intron (NM_001146180, intron 3 of 13)	intron (NM_001146180, intron 3 of 13)	52298	NM_001146180	211401	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	4.632	1.243	0.765	4.899	2.388	0.697	8.151	6.669	3.746	3.538	3.773	1.587	9.080	6.850	8.597	6.540	4.454	5.834	5.093	2.317	0.975	5.890	2.028	1.650	6.417
11325	chr5	68185172	68198251	+	0	NA	Intergenic	Intergenic	159876	NM_001018019	433899	Mm.332422	NM_001018019	ENSMUSG00000068082	Grxcr1	Tg(Eno2-Gabrb3)0370Brll|pi|tde	glutaredoxin, cysteine rich 1	protein-coding	3.931	1.757	1.042	3.367	3.107	1.488	6.289	5.186	4.479	5.001	1.216	1.828	7.009	6.728	7.123	7.248	4.667	5.737	1.951	1.179	0.712	nan	1.569	1.152	3.467
833	chr1	166450763	166453144	+	0	NA	Intergenic	Intergenic	-42125	NM_001142948	71592	Mm.192094	NM_175170	ENSMUSG00000040596	Pogk	9130401E23Rik|BASS2|mKIAA1513	pogo transposable element with KRAB domain	protein-coding	6.246	0.492	0.219	2.575	1.671	0.560	4.512	4.876	5.786	5.212	1.904	3.094	7.344	5.484	6.479	10.085	6.446	6.650	0.777	0.409	0.184	nan	nan	0.154	4.774
5112	chr15	36300597	36307655	+	0	NA	Intergenic	Intergenic	-20979	NM_013923	30945	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	10.495	6.031	2.853	5.185	4.337	2.830	13.256	12.517	6.376	8.137	5.246	2.981	14.187	11.150	10.142	8.404	9.963	9.663	1.279	1.062	0.569	nan	0.828	0.870	9.360
11288	chr5	66087437	66090863	+	0	NA	intron (NM_178446, intron 2 of 6)	intron (NM_178446, intron 2 of 6)	9029	NM_139065	245945	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	7.875	14.743	5.966	9.725	6.564	6.125	10.238	7.976	6.735	15.360	7.746	4.589	7.042	9.739	10.365	10.134	6.701	8.466	6.406	2.857	5.350	5.969	4.916	8.526	13.203
4513	chr14	21582808	21594023	+	0	NA	intron (NM_017479, intron 2 of 16)	intron (NM_017479, intron 2 of 16)	88630	NM_017479	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	5.153	1.068	0.608	3.866	3.304	1.731	4.670	6.560	3.767	4.141	2.613	1.640	4.927	6.659	6.132	5.717	3.601	5.460	0.924	1.050	0.951	nan	0.723	0.417	6.683
2743	chr11	98338929	98342586	+	0	NA	Intergenic	Intergenic	-7649	NM_144828	19049	Mm.45372	NM_144828	ENSMUSG00000061718	Ppp1r1b	AU040756|DARPP-32|Darpp32	protein phosphatase 1, regulatory (inhibitor) subunit 1B	protein-coding	1.111	14.473	7.278	1.525	0.677	0.387	0.423	0.381	0.809	0.647	0.609	0.318	0.346	0.500	0.623	0.748	nan	0.845	0.525	nan	0.626	0.337	nan	nan	0.667
4588	chr14	32480804	32484081	+	0	NA	Intergenic	Intergenic	-16533	NM_009891	12647	Mm.442817	NM_009891	ENSMUSG00000021919	Chat	B230380D24Rik	choline acetyltransferase	protein-coding	7.059	7.118	2.203	7.610	3.435	1.816	4.189	4.261	5.297	5.103	7.867	5.016	4.270	6.213	5.841	5.913	nan	6.355	4.690	2.515	2.046	nan	2.358	1.387	7.772
14886	chr9	20895243	20897307	+	0	NA	intron (NM_016876, intron 5 of 10)	intron (NM_016876, intron 5 of 10)	2315	NM_016876	53356	Mm.427309	NM_016876	ENSMUSG00000070319	Eif3g	44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44	eukaryotic translation initiation factor 3, subunit G	protein-coding	6.920	9.803	4.831	6.010	4.073	4.581	5.674	6.163	4.064	5.585	4.464	3.228	4.571	6.709	6.029	7.002	5.271	5.514	5.353	4.698	4.811	5.287	5.217	5.533	8.709
3276	chr12	35210472	35215097	+	0	NA	Intergenic	Intergenic	165595	NM_001014973	217463	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	0.927	nan	1.744	0.967	0.541	0.214	0.409	0.415	nan	0.534	0.478	0.362	0.134	0.355	0.594	0.772	0.823	0.921	7.069	3.116	2.110	5.024	5.097	3.444	0.709
7892	chr19	55873686	55875319	+	0	NA	intron (NR_138565, intron 4 of 15)	intron (NR_138565, intron 4 of 15)	-20819	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	4.682	nan	0.372	1.096	2.476	1.989	4.201	4.678	2.576	2.488	0.797	1.030	3.050	4.463	2.662	3.533	3.157	3.345	0.413	0.718	0.438	0.342	0.696	0.274	3.032
3649	chr12	103000219	103010039	+	0	NA	intron (NM_001081017, intron 4 of 48)	intron (NM_001081017, intron 4 of 48)	56270	NM_001081017	217843	Mm.387073	NM_177621	ENSMUSG00000021198	Unc79	9030205A07Rik|Mlca3	unc-79 homolog (C. elegans)	protein-coding	9.073	0.752	0.426	4.679	3.258	1.406	6.263	7.060	6.530	7.054	3.747	2.786	8.928	8.416	9.172	10.481	6.208	8.248	1.524	0.745	0.438	3.139	0.724	0.450	10.781
548	chr1	128463297	128465374	+	0	NA	Intergenic	ID_B1|SINE|B4	-46919	NM_145507	226414	Mm.28693	NM_145507	ENSMUSG00000026356	Dars	5730439G15Rik	aspartyl-tRNA synthetase	protein-coding	4.096	nan	0.630	2.112	1.995	0.989	1.343	1.101	3.208	3.491	0.521	0.283	3.165	3.161	2.040	3.808	2.093	4.222	nan	0.162	0.295	0.293	0.359	0.343	1.675
15600	chr9	120814445	120817048	+	0	NA	Intergenic	MTC|LTR|ERVL-MaLR	99504	NR_040742	76402	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	2.787	0.401	0.451	1.352	1.046	0.510	3.965	1.842	1.659	1.973	0.894	0.830	2.074	3.596	2.498	3.079	2.177	2.600	0.604	0.530	0.547	0.607	nan	0.442	4.155
14852	chr9	13228319	13230102	+	0	NA	Intergenic	B1F1|SINE|Alu	16531	NM_001033181	77532	Mm.459434	NM_001033181	ENSMUSG00000079083	Jrkl	C030035D04Rik|HHMJG	Jrk-like	protein-coding	5.218	1.713	1.055	5.466	3.651	0.919	4.117	4.354	4.235	4.247	4.529	3.910	4.614	4.011	4.828	5.179	2.231	5.691	1.531	0.733	0.540	1.709	1.446	0.621	5.449
2575	chr11	86445994	86452245	+	0	NA	intron (NR_030571, intron 1 of 2)	intron (NR_030571, intron 1 of 2)	33275	NR_030571	100124487		NR_030571	ENSMUSG00000077049	Mir467c	Mirn467c|mir-467c	microRNA 467c	ncRNA	3.936	3.167	1.823	3.580	4.727	2.909	3.773	4.169	4.998	4.531	6.684	3.110	4.674	5.844	4.484	3.816	3.532	5.494	0.932	1.288	1.031	nan	0.749	0.667	nan
3450	chr12	77417325	77422747	+	0	NA	intron (NR_045554, intron 8 of 11)	L1_Mus3|LINE|L1	9895	NM_001252616	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	9.612	4.637	2.759	3.271	4.010	2.171	5.881	2.031	3.134	4.319	2.265	0.782	6.648	7.227	4.651	5.545	5.478	6.473	0.769	1.160	0.850	0.625	0.682	0.495	10.195
1110	chr10	17285961	17291586	+	0	NA	Intergenic	Intergenic	-192991	NR_038020	100504235	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	6.693	1.963	1.919	2.740	3.887	2.944	4.875	4.823	nan	4.788	2.050	1.260	5.977	nan	5.576	6.745	5.167	5.299	0.799	0.784	0.476	0.588	0.906	0.934	nan
4641	chr14	47609687	47611449	+	0	NA	Intergenic	RMER16-int|LTR|ERVK	-38743	NM_001347527	16709	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	1.938	0.547	0.296	2.044	1.542	1.235	2.120	2.157	3.023	2.149	1.235	1.523	3.177	3.968	2.483	2.275	1.248	3.521	0.508	0.351	0.366	0.450	0.509	0.216	2.178
10347	chr4	106640934	106646709	+	0	NA	Intergenic	Intergenic	-7248	NM_001285783	230577	Mm.134029	NM_172272	ENSMUSG00000043572	Pars2	BC027073	prolyl-tRNA synthetase (mitochondrial)(putative)	protein-coding	0.863	10.475	4.406	0.953	0.576	0.265	0.515	nan	0.718	0.722	1.605	1.082	0.433	0.764	0.936	0.809	0.638	nan	2.113	1.401	0.844	4.905	1.100	0.853	1.210
2204	chr11	53881546	53882816	+	0	NA	intron (NM_011396, intron 2 of 9)	URR1B|DNA|hAT-Charlie	9522	NM_011396	20520	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	2.344	4.172	0.925	3.322	1.979	1.448	2.819	2.002	1.705	4.283	1.570	1.332	2.301	3.958	3.355	3.167	1.327	2.524	nan	0.711	0.996	2.337	0.851	1.452	4.894
10019	chr4	43532722	43537341	+	0	NA	intron (NM_011602, intron 48 of 56)	Lx5c|LINE|L1	-11477	NM_001277875	22004	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	1.803	nan	0.744	2.946	2.511	1.195	3.051	3.150	2.698	3.381	4.020	2.714	2.164	5.011	3.574	2.728	1.149	3.087	1.953	1.471	1.234	nan	1.313	1.374	3.246
6494	chr17	29214109	29219081	+	0	NA	intron (NM_153166, intron 3 of 20)	intron (NM_153166, intron 3 of 20)	21195	NM_153166	240058	Mm.39905	NM_153166	ENSMUSG00000024008	Cpne5	A830083G22Rik	copine V	protein-coding	6.565	3.926	1.839	3.215	2.584	2.192	2.674	4.250	3.951	4.048	2.774	2.956	1.707	2.594	1.806	nan	6.543	4.273	1.884	2.077	2.142	2.010	1.989	2.166	7.041
7964	chr2	11377688	11381278	+	0	NA	intron (NR_040615, intron 1 of 2)	MT2A|LTR|ERVL	19017	NR_040615	77543	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	5.097	0.741	0.686	1.665	3.350	2.094	5.694	8.128	2.046	2.330	3.016	2.111	5.970	5.452	4.297	3.845	5.438	3.343	2.271	2.666	1.578	2.605	2.805	2.226	3.460
783	chr1	158991223	158992690	+	0	NA	Intergenic	Intergenic	-34518	NM_001085376	23850	Mm.458621	NM_001085376	ENSMUSG00000073530	Pappa2	PAPP-A2|PLAC3|Pappe	pappalysin 2	protein-coding	3.998	1.929	0.790	1.209	0.624	0.312	7.102	4.559	nan	1.691	4.052	1.464	3.224	4.852	3.103	2.429	0.990	2.124	nan	0.906	1.040	0.794	nan	0.565	1.763
14366	chr8	81342133	81345444	+	0	NA	intron (NM_001024617, intron 1 of 24)	intron (NM_001024617, intron 1 of 24)	1226	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	5.089	7.717	3.448	4.876	2.797	1.497	4.383	6.424	nan	3.930	2.634	1.435	6.996	5.765	5.331	7.383	3.824	5.833	3.075	2.631	2.410	nan	1.582	1.612	5.714
1357	chr10	62494646	62496411	+	0	NA	intron (NM_011157, intron 2 of 2)	intron (NM_011157, intron 2 of 2)	-8723	NM_133672	30930	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	7.034	0.403	0.221	2.908	4.335	4.359	5.721	3.770	3.548	5.253	2.622	1.135	5.961	5.429	4.187	5.267	7.462	3.466	nan	1.047	1.129	0.513	0.718	0.758	4.737
6439	chr17	26813037	26814788	+	0	NA	Intergenic	Intergenic	27653	NM_008700	18091	Mm.41974	NM_008700	ENSMUSG00000015579	Nkx2-5	Csx|Nkx-2.5|Nkx2.5|tinman	NK2 homeobox 5	protein-coding	8.876	9.983	3.350	8.265	4.588	3.580	5.797	6.983	4.593	6.575	4.737	2.040	6.342	9.919	8.359	10.100	5.948	8.240	5.990	2.853	3.609	6.792	3.458	4.075	11.577
7602	chr19	16204221	16209272	+	0	NA	intron (NM_008139, intron 1 of 6)	intron (NM_008139, intron 1 of 6)	42648	NR_033228	595139	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	8.027	5.337	1.430	7.837	4.306	3.339	7.930	8.015	4.937	12.984	6.713	3.235	6.022	8.540	7.000	8.040	8.099	nan	2.600	2.575	3.205	4.731	3.519	4.576	12.275
13814	chr7	137814462	137817927	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	378520	NR_033611	620016	Mm.388932	NR_033611	ENSMUSG00000100863	Gm12669	OTTMUSG00000007920	glutaredoxin 3 pseudogene	pseudo	1.858	nan	0.406	2.426	1.935	1.672	2.803	4.649	2.413	2.564	6.607	3.414	3.999	4.250	2.932	1.943	1.480	3.046	1.180	0.810	0.929	1.612	1.107	0.869	2.390
10541	chr4	128461525	128466786	+	0	NA	intron (NM_001281955, intron 31 of 70)	intron (NM_001281955, intron 31 of 70)	145943	NM_177758	269585	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding	1.067	14.710	7.424	1.302	0.748	0.421	0.533	0.751	0.763	1.076	0.645	0.547	0.489	0.624	nan	0.962	0.787	1.041	1.131	1.125	0.711	0.832	0.621	0.507	1.134
8635	chr2	126758389	126759978	+	0	NA	3' UTR (NM_001252580, exon 19 of 19)	3' UTR (NM_001252580, exon 19 of 19)	24277	NM_029163	75083	Mm.389373	NM_029163	ENSMUSG00000027364	Usp50	1700086G18Rik|4930511O11Rik	ubiquitin specific peptidase 50	protein-coding	18.001	9.761	5.533	11.065	9.855	5.577	11.706	13.733	8.181	11.126	11.117	7.050	12.270	13.715	10.147	12.127	16.346	10.426	9.228	9.522	7.097	8.086	10.944	10.008	15.792
1152	chr10	20191620	20192691	+	0	NA	intron (NM_001198635, intron 1 of 17)	L1_Mus1|LINE|L1	9699	NR_045350	73811	Mm.55644	NR_045350	ENSMUSG00000110754	4930405J17Rik	-	RIKEN cDNA 4930405J17 gene	ncRNA	5.160	3.148	1.451	3.863	4.174	2.174	2.155	6.995	3.411	2.686	0.959	1.192	5.002	3.853	3.828	3.251	4.239	4.211	2.978	2.131	0.728	5.572	2.041	0.843	2.119
49	chr1	20998474	21000861	+	0	NA	Intergenic	Intergenic	48041	NM_027974	71877	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	10.181	2.241	1.241	5.407	7.698	4.695	9.347	9.588	6.216	8.089	5.180	3.207	8.994	11.729	8.045	11.316	5.607	7.648	1.485	1.872	1.169	1.077	1.198	0.797	6.652
789	chr1	161974401	161977428	+	0	NA	intron (NM_001204904, intron 1 of 6)	ORR1F|LTR|ERVL-MaLR	3722	NM_001204904	75368	Mm.108728	NM_001204904	ENSMUSG00000086277	4930558K02Rik	-	RIKEN cDNA 4930558K02 gene	protein-coding	7.015	20.432	7.969	10.073	5.739	2.630	5.673	5.704	6.075	7.388	3.001	2.732	7.225	8.379	7.574	11.822	4.805	8.933	nan	2.809	2.466	2.455	nan	0.658	7.972
4684	chr14	55625607	55629721	+	0	NA	exon (NM_024267, exon 27 of 30)	exon (NM_024267, exon 27 of 30)	8014	NM_024267	75751	Mm.27546	NM_024267	ENSMUSG00000002319	Ipo4	8430408O15Rik|AA409693|Imp4a|RanBP4	importin 4	protein-coding	1.902	nan	0.489	2.126	2.498	1.820	1.793	2.508	1.907	2.400	0.462	0.369	3.995	7.698	4.405	5.190	3.087	2.937	1.062	0.734	0.682	0.572	0.824	0.819	5.991
7786	chr19	42329231	42333215	+	0	NA	intron (NM_145123, intron 3 of 14)	intron (NM_145123, intron 3 of 14)	-51053	NR_037246	100526549		NR_037246	ENSMUSG00000093234	Mir3085	mir-3085|mmu-mir-3085	microRNA 3085	ncRNA	nan	0.450	0.163	0.849	0.932	0.651	2.298	nan	0.401	0.933	0.297	0.297	1.000	1.696	1.243	0.901	nan	1.635	2.597	1.973	1.292	5.193	3.295	2.482	2.019
6228	chr16	93371712	93375536	+	0	NA	Intergenic	Intergenic	3904	NR_030429	791074		NR_030429	ENSMUSG00000076457	Mir802	Mirn802|mir-802|mmu-mir-802	microRNA 802	ncRNA	nan	0.593	0.527	0.382	0.392	0.227	1.092	2.428	nan	0.799	7.705	1.317	0.854	0.904	nan	0.951	0.564	nan	nan	0.752	0.338	0.794	0.804	0.418	0.812
10117	chr4	57312453	57315015	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-11897	NM_011207	545622	Mm.246552	NM_011207	ENSMUSG00000038764	Ptpn3	9530011I20Rik|PTP-H1|PTPCL	protein tyrosine phosphatase, non-receptor type 3	protein-coding	9.504	3.340	1.196	9.367	4.235	2.877	10.272	10.036	6.396	12.875	5.631	4.743	9.379	12.989	11.297	12.435	6.595	10.470	6.858	2.701	2.746	8.382	4.309	4.048	19.244
2967	chr11	113590783	113602716	+	0	NA	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-22732	NM_009217	20606		NM_009217	ENSMUSG00000047904	Sstr2	SRIF-1|SS2R|SSTR-2|Smstr-2|Smstr2|sst2	somatostatin receptor 2	protein-coding	6.959	nan	0.742	5.832	5.885	3.376	nan	6.707	3.731	4.927	3.737	2.802	4.941	7.159	5.697	7.389	4.654	5.521	3.563	nan	2.708	4.638	2.688	2.002	6.210
8418	chr2	84945007	84947175	+	0	NA	intron (NM_021398, intron 6 of 12)	PB1D7|SINE|Alu	9445	NM_021398	58207	Mm.290729	NM_021398	ENSMUSG00000027074	Slc43a3	Eeg1|SEEEG-1	solute carrier family 43, member 3	protein-coding	7.011	0.954	0.484	4.781	1.627	0.743	3.356	8.986	3.748	3.351	5.482	5.052	4.489	3.537	3.734	5.275	4.197	5.214	2.855	1.368	1.403	1.756	3.388	1.337	6.639
12964	chr7	19853078	19858968	+	0	NA	intron (NM_001270489, intron 2 of 3)	intron (NM_001270489, intron 2 of 3)	4020	NM_001270489	100502736	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	12.429	14.135	5.125	10.408	7.227	4.330	11.987	13.229	7.066	11.229	7.597	4.998	10.585	12.431	11.728	12.744	9.895	10.837	4.291	3.642	3.253	5.536	3.089	3.047	18.867
2117	chr11	45694046	45695956	+	0	NA	Intergenic	Intergenic	-113082	NR_045876	100009664	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	3.449	1.120	0.832	1.797	1.628	1.096	2.105	2.646	3.384	2.424	2.445	1.664	3.055	3.687	2.847	3.459	2.994	3.805	nan	0.674	0.385	nan	nan	0.298	2.507
4860	chr14	76548920	76553123	+	0	NA	intron (NM_001160326, intron 1 of 2)	RLTR20C1_MM|LTR|ERVK	5666	NM_001160326	72661	Mm.320384	NM_001160326	ENSMUSG00000052584	Serp2	2810032E02Rik	stress-associated endoplasmic reticulum protein family member 2	protein-coding	5.938	6.687	3.095	6.505	2.937	1.273	3.620	7.200	3.287	4.745	3.156	1.965	4.788	7.353	5.046	4.826	3.495	4.660	3.141	1.719	1.454	4.090	1.772	1.366	7.182
7110	chr18	34157980	34159622	+	0	NA	Intergenic	Intergenic	-62183	NM_007462	11789	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	3.773	0.628	0.198	1.820	1.922	1.480	4.183	6.021	2.637	2.427	5.522	3.298	4.902	3.612	3.777	4.521	5.319	3.387	2.143	1.705	0.782	1.919	1.607	1.216	5.104
11444	chr5	93237696	93242946	+	0	NA	Intergenic	Intergenic	-27252	NM_007635	12452	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	6.643	0.466	0.137	4.747	4.523	2.235	6.861	5.671	5.620	5.463	2.564	2.101	7.584	9.282	8.020	7.396	5.527	6.765	5.090	1.602	0.985	3.207	3.561	2.354	7.391
4398	chr13	110227916	110232273	+	0	NA	intron (NM_023852, intron 2 of 4)	intron (NM_023852, intron 2 of 4)	50112	NM_023852	67295	Mm.151600	NM_023852	ENSMUSG00000021700	Rab3c	2700062I01Rik|3110015B08Rik|3110037E15Rik|AI850886	RAB3C, member RAS oncogene family	protein-coding	4.832	nan	0.713	3.737	1.827	0.658	4.653	4.465	3.312	3.617	1.935	2.283	5.122	4.142	6.471	5.549	2.707	4.859	1.959	0.974	0.647	nan	1.335	0.902	4.521
6262	chr16	96026168	96034655	+	0	NA	intron (NM_001103179, intron 27 of 40)	intron (NM_001103179, intron 27 of 40)	-39508	NM_019537	56088	Mm.396248	NM_019537	ENSMUSG00000022913	Psmg1	AW552102|Dscr2	proteasome (prosome, macropain) assembly chaperone 1	protein-coding	nan	1.281	0.784	1.200	0.840	0.562	0.696	1.068	nan	0.966	0.758	0.667	0.358	0.856	nan	1.171	0.744	nan	nan	4.334	3.493	7.063	6.586	5.273	0.956
715	chr1	140401916	140404861	+	0	NA	intron (NM_001081027, intron 8 of 27)	L1_Rod|LINE|L1	157131	NM_001081027	240776	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	4.741	2.127	1.037	3.195	2.583	1.652	2.328	2.936	5.590	6.046	4.425	2.965	5.884	5.940	4.892	6.192	3.801	5.389	1.065	0.984	0.500	2.415	0.515	0.337	4.427
2201	chr11	53832057	53836234	+	0	NA	intron (NR_033332, intron 2 of 3)	intron (NR_033332, intron 2 of 3)	25111	NR_033332	622459	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115|OTTMUSG00000005650	predicted gene 12216	ncRNA	2.508	0.659	0.558	1.090	3.889	2.384	3.928	4.680	2.126	1.906	2.306	3.329	3.928	3.735	2.677	3.645	3.446	2.619	nan	0.972	1.334	1.836	2.992	3.089	nan
3615	chr12	92826171	92831266	+	0	NA	Intergenic	Intergenic	616105	NR_126436	75295	Mm.243878	NR_126436		4930559C10Rik	-	RIKEN cDNA 4930559C10 gene	ncRNA	12.700	13.047	6.875	9.963	7.330	5.802	8.232	7.666	6.671	10.491	7.088	6.407	9.217	10.334	9.349	10.448	12.640	8.876	6.224	3.361	4.144	5.667	4.446	6.138	nan
9139	chr3	9663162	9671447	+	0	NA	Intergenic	Intergenic	-57219	NM_133218	170753	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	7.092	2.778	1.912	4.344	6.423	3.646	13.987	7.940	6.551	8.171	1.367	1.709	12.423	12.233	10.574	10.298	8.092	9.214	2.248	1.583	1.228	1.715	2.594	1.924	10.841
9199	chr3	27886394	27888282	+	0	NA	intron (NM_001164437, intron 1 of 3)	ORR1E|LTR|ERVL-MaLR	9030	NM_001164437	208613	Mm.59189	NM_001164437	ENSMUSG00000043164	Tmem212	E030011K20Rik|Gm564	transmembrane protein 212	protein-coding	4.569	1.988	0.680	4.604	1.795	0.927	3.765	3.655	4.742	3.268	5.074	2.451	4.318	4.810	4.839	5.190	2.816	6.714	2.725	0.941	0.873	4.629	1.045	1.027	5.481
23	chr1	10982367	10986193	+	0	NA	Intergenic	Lx2|LINE|L1	-9185	NM_029525	109294	Mm.123247	NM_029525	ENSMUSG00000048960	Prex2	6230420N16Rik|AI316880|AI553603|C030045D06Rik|D430013K02|Depdc2|P-Rex2	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2	protein-coding	2.778	0.708	0.421	6.129	1.695	1.221	1.475	0.780	2.037	2.851	0.871	0.740	0.936	1.824	1.497	2.194	1.131	2.573	0.730	1.046	0.856	1.416	0.665	0.872	2.679
364	chr1	82925498	82927260	+	0	NA	Intergenic	Intergenic	86919	NM_001347077	15463	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	4.806	0.828	0.263	2.520	3.789	1.765	1.993	4.668	5.436	6.771	0.751	1.990	7.498	6.567	3.679	7.054	4.784	7.951	nan	nan	0.765	0.365	nan	0.539	2.342
13644	chr7	120381571	120387030	+	0	NA	intron (NM_177213, intron 21 of 30)	L1Md_F3|LINE|L1	-25347	NM_001278943	233810		NM_001278943	ENSMUSG00000051900	Abca16	AY243472	ATP-binding cassette, sub-family A (ABC1), member 16	protein-coding	9.182	1.998	0.949	4.853	5.263	2.061	9.506	10.504	5.025	6.750	5.941	2.905	10.981	10.758	8.403	8.567	9.485	7.406	6.113	3.201	1.971	2.999	7.067	4.816	10.591
11787	chr5	135441542	135453306	+	0	NA	intron (NM_146001, intron 8 of 30)	intron (NM_146001, intron 8 of 30)	-52878	NM_148932	107939	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	5.267	0.633	0.534	3.732	5.223	3.479	7.807	4.198	3.519	4.888	3.519	2.054	4.828	7.676	7.655	7.253	7.377	5.551	1.844	1.379	1.151	1.334	nan	1.799	6.852
3069	chr11	118917247	118920884	+	0	NA	Intergenic	Intergenic	-7468	NM_001285437	52897	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	6.519	nan	2.373	8.380	2.432	1.745	6.255	8.644	4.596	7.664	4.608	3.541	6.614	8.089	9.297	9.258	5.226	8.258	8.516	nan	3.556	11.348	4.056	4.621	16.485
3931	chr13	32233119	32236633	+	0	NA	intron (NM_146041, intron 1 of 10)	intron (NM_146041, intron 1 of 10)	103668	NM_146041	218138	Mm.247143	NM_146041	ENSMUSG00000038372	Gmds	BC031788|C87208	GDP-mannose 4, 6-dehydratase	protein-coding	0.283	0.683	0.416	0.375	0.213	0.036	0.482	0.477	0.646	0.554	0.668	0.489	0.301	0.197	0.303	0.503	0.312	0.567	3.564	1.999	0.825	3.880	3.004	1.550	0.404
12174	chr6	38744602	38746973	+	0	NA	intron (NM_001294144, intron 4 of 14)	intron (NM_001294144, intron 4 of 14)	82718	NM_001101507	665180	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	2.372	1.211	0.220	3.198	2.063	0.940	1.539	1.797	2.638	2.293	0.618	0.817	2.564	4.932	2.722	4.964	3.216	4.755	nan	0.688	0.437	nan	nan	0.247	3.688
2680	chr11	95211855	95214360	+	0	NA	Intergenic	RSINE1|SINE|B4	-48422	NM_053093	93670	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	2.663	3.917	1.782	3.118	4.508	3.311	1.423	4.049	2.241	2.815	0.687	1.652	2.409	3.276	3.177	3.090	nan	3.139	5.160	nan	3.268	2.638	6.905	5.917	2.687
10249	chr4	88364236	88370580	+	0	NA	intron (NM_001081184, intron 33 of 43)	L1Md_T|LINE|L1	71518	NM_025760	66775	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	6.506	nan	1.107	6.332	3.402	2.199	4.477	5.329	nan	6.148	4.292	2.850	6.095	5.933	6.417	6.898	4.119	7.413	3.440	nan	1.343	3.223	2.116	2.345	nan
2957	chr11	113059001	113060442	+	0	NA	intron (NR_015556, intron 2 of 2)	intron (NR_015556, intron 2 of 2)	142117	NR_015556	72386	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	1.528	5.501	2.347	0.866	1.295	0.774	5.761	5.931	3.905	4.185	6.168	4.086	4.332	6.160	5.314	3.278	1.845	3.126	8.475	2.461	2.733	4.900	5.170	3.232	2.135
11653	chr5	121654555	121655925	+	0	NA	intron (NM_028037, intron 2 of 20)	MTD|LTR|ERVL-MaLR	5270	NM_028037	71985	Mm.45423	NM_028037	ENSMUSG00000029456	Acad10	2410021P16Rik	acyl-Coenzyme A dehydrogenase family, member 10	protein-coding	6.385	10.330	3.074	7.372	3.685	1.080	4.917	4.684	3.843	6.711	5.727	2.317	4.105	5.123	6.097	6.871	4.422	6.804	nan	nan	1.773	4.777	nan	1.049	10.329
1845	chr10	127032015	127040489	+	0	NA	intron (NM_001205036, intron 2 of 2)	PB1D10|SINE|Alu	5142	NM_001205036	100504608	Mm.486142	NM_001205036	ENSMUSG00000080115	Mettl21b	-	methyltransferase like 21B	protein-coding	6.126	2.460	0.995	4.112	2.623	1.704	2.033	3.514	2.749	3.161	5.103	3.060	1.671	4.122	2.410	2.871	2.127	2.634	1.214	1.338	1.244	1.033	nan	0.508	3.841
1678	chr10	98569495	98571302	+	0	NA	Intergenic	L1MA5|LINE|L1	-218531	NR_045179	667438	Mm.414522	NR_045179		Gm8633	EG667438	predicted gene 8633	ncRNA	7.430	14.431	3.663	11.466	2.588	1.554	5.162	6.678	5.157	12.960	6.438	4.913	6.299	7.869	9.007	10.228	5.177	9.056	5.040	1.585	2.476	5.849	3.229	5.114	16.163
1025	chr1	192721925	192730682	+	0	NA	exon (NM_144881, exon 6 of 12)	exon (NM_144881, exon 6 of 12)	44916	NM_144881	226861	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	5.877	0.923	0.594	2.586	2.196	1.257	3.556	4.081	4.496	6.600	1.411	0.953	5.119	6.376	4.620	nan	5.359	5.047	3.448	2.379	1.515	4.538	1.882	1.088	4.819
4692	chr14	56186829	56191414	+	0	NA	Intergenic	L1Md_T|LINE|L1	-14522	NM_153052	245839	Mm.207063	NM_153052	ENSMUSG00000015443	Gzmn	GrN	granzyme N	protein-coding	1.827	nan	0.652	2.573	3.197	2.897	2.295	4.345	2.468	2.980	0.590	0.626	2.998	6.774	3.190	3.334	2.153	2.246	1.410	0.826	0.936	0.664	1.938	2.260	2.612
8291	chr2	60739192	60741387	+	0	NA	Intergenic	Intergenic	-17686	NM_001159564	16420	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	9.002	2.214	1.159	7.770	5.410	2.769	8.067	9.074	7.588	7.471	8.441	5.255	8.421	10.033	9.218	10.024	7.523	9.240	1.970	1.379	1.427	1.339	0.684	0.558	7.486
11435	chr5	92647920	92650219	+	0	NA	exon (NM_177230, exon 12 of 25)	exon (NM_177230, exon 12 of 25)	26058	NM_177230	320696	Mm.209991	NM_177230	ENSMUSG00000050050	Ccdc158	4932413O14Rik	coiled-coil domain containing 158	protein-coding	3.747	0.939	0.492	2.363	6.367	2.637	4.121	2.567	2.765	2.735	7.381	2.406	5.058	6.040	5.141	3.512	2.061	4.940	0.734	0.821	0.626	1.142	0.700	0.318	3.110
11135	chr5	32702043	32706633	+	0	NA	Intergenic	L1Md_F2|LINE|L1	42004	NM_001347332	320951	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	1.051	0.653	0.597	nan	1.015	0.376	0.933	1.281	0.724	0.706	0.996	0.948	0.636	0.767	0.811	1.008	0.665	1.047	7.077	3.997	2.547	6.995	8.146	5.605	0.876
14674	chr8	122356061	122358622	+	0	NA	exon (NM_133202, exon 3 of 3)	exon (NM_133202, exon 3 of 3)	3405	NM_133202	170732	Mm.154808	NM_133202	ENSMUSG00000039079	Trhr2	TRH-R2	thyrotropin releasing hormone receptor 2	protein-coding	6.745	3.497	2.284	2.659	5.700	4.071	4.874	6.618	2.440	3.397	3.646	2.581	4.034	5.881	3.687	nan	4.250	3.422	0.579	2.099	1.979	0.608	0.882	0.519	4.490
8583	chr2	119809988	119816526	+	0	NA	exon (NM_019392, exon 18 of 19)	exon (NM_019392, exon 18 of 19)	13743	NM_019392	22174	Mm.2901	NM_019392	ENSMUSG00000027298	Tyro3	AI323366|Brt|Dtk|Etk-2|Rse|Sky|TK19-2|Tif|etk2/tyro3|tk19-1	TYRO3 protein tyrosine kinase 3	protein-coding	6.564	0.658	0.536	3.053	3.766	2.428	3.999	6.121	4.574	6.100	0.592	0.875	nan	6.712	4.582	nan	6.927	7.530	0.531	0.651	0.869	0.465	0.472	0.780	nan
10109	chr4	57078061	57086922	+	0	NA	intron (NM_019427, intron 6 of 15)	intron (NM_019427, intron 6 of 15)	60665	NM_019427	54357	Mm.28217	NM_019427	ENSMUSG00000028434	Epb41l4b	6430543G08Rik|AA589614|AU021054|BB007528|D4Ertd346e|Ehm2|Epb4.1l4b|Lulu2	erythrocyte membrane protein band 4.1 like 4b	protein-coding	3.699	nan	0.426	1.462	1.235	0.524	nan	2.770	1.545	2.112	0.670	0.556	4.722	5.403	3.481	3.676	2.553	3.214	nan	0.643	0.332	1.915	0.837	0.540	5.117
4375	chr13	107810933	107813528	+	0	NA	intron (NM_145456, intron 2 of 14)	intron (NM_145456, intron 2 of 14)	-51143	NR_029759	723929		NR_029759	ENSMUSG00000065425	Mir325	Mirn325|mmu-mir-325	microRNA 325	ncRNA	6.598	9.767	3.466	8.401	4.143	3.776	6.270	6.829	nan	10.416	5.072	3.016	5.261	7.458	6.619	7.616	4.054	6.925	5.042	3.135	3.475	nan	4.498	5.761	11.681
12966	chr7	19911497	19913228	+	0	NA	intron (NM_027514, intron 4 of 7)	intron (NM_027514, intron 4 of 7)	8781	NM_027514	52118	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	7.534	3.248	1.809	7.197	6.795	2.770	7.812	7.468	2.876	4.944	2.637	1.752	5.753	9.163	4.740	7.667	7.029	6.322	3.879	5.561	1.593	4.812	5.707	3.462	6.856
2478	chr11	76027747	76031484	+	0	NA	Intergenic	Intergenic	-1833	NM_029658	76566	Mm.34131	NM_029658	ENSMUSG00000020846	Rflnb	1500005K14Rik|Fam101b|RefilinB|cfm	refilin B	protein-coding	6.232	4.642	1.678	5.781	3.144	2.024	6.068	6.545	5.054	6.738	6.550	4.110	6.600	8.296	nan	8.617	6.366	6.685	1.873	1.578	nan	3.194	1.869	1.758	7.912
7498	chr19	5855782	5856985	+	0	NA	intron (NM_026169, intron 10 of 10)	B1_Mur4|SINE|Alu	-10903	NR_003513	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	1.045	0.800	0.832	1.972	2.452	2.221	2.942	4.204	nan	2.274	0.477	0.578	2.700	3.810	2.270	3.066	2.890	4.091	0.392	0.585	1.433	1.496	1.004	1.015	2.424
15182	chr9	63590932	63592167	+	0	NA	intron (NM_001311098, intron 3 of 21)	L1M3e|LINE|L1	10944	NM_030068	78250	Mm.444612	NM_030068	ENSMUSG00000037801	Iqch	4921504K03Rik	IQ motif containing H	protein-coding	1.973	1.762	1.113	2.373	1.974	1.517	1.976	4.045	1.751	2.145	2.679	2.347	1.785	3.372	nan	1.377	1.514	1.814	nan	1.034	0.936	0.770	0.612	0.388	2.175
2340	chr11	67733205	67737047	+	0	NA	intron (NM_175681, intron 9 of 12)	intron (NM_175681, intron 9 of 12)	36027	NM_175681	93896	Mm.118883	NM_175681	ENSMUSG00000049928	Glp2r	9530092J08Rik|GLP-2	glucagon-like peptide 2 receptor	protein-coding	4.160	1.996	0.548	5.209	3.456	1.291	5.827	4.842	2.402	5.259	2.805	2.398	5.623	6.753	6.231	6.941	4.230	5.484	5.075	3.002	1.805	6.382	nan	3.147	8.203
8079	chr2	29987139	29991227	+	0	NA	intron (NM_001309460, intron 9 of 57)	B4A|SINE|B4	-6767	NR_105963	102465603		NR_105963	ENSMUSG00000098453	Mir6997	Gm27310|mmu-mir-6997	microRNA 6997	ncRNA	8.901	5.157	2.085	5.636	3.892	2.752	7.337	9.311	4.771	6.238	4.300	2.647	7.338	8.989	6.955	9.555	6.604	5.891	3.561	2.589	2.532	3.661	2.996	2.277	9.597
3555	chr12	85546937	85548755	+	0	NA	Intergenic	Intergenic	-51259	NM_001205052	81703	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	4.149	11.930	5.424	6.515	2.748	0.909	1.347	4.317	3.047	3.704	4.195	3.076	1.886	4.823	3.814	3.612	2.688	3.060	4.002	1.986	1.590	3.711	2.795	1.725	6.656
11226	chr5	53060175	53061306	+	0	NA	intron (NM_011402, intron 4 of 12)	intron (NM_011402, intron 4 of 12)	11387	NM_011402	20531	Mm.284891	NM_011402	ENSMUSG00000029188	Slc34a2	AA536683|D5Ertd227e|NaPi-2b|Npt2b	solute carrier family 34 (sodium phosphate), member 2	protein-coding	5.309	5.196	1.927	4.924	2.442	1.769	4.019	4.000	3.833	8.807	2.648	1.336	5.294	5.428	7.546	8.227	4.045	7.663	4.092	1.495	2.792	5.247	3.197	2.272	9.467
720	chr1	145487932	145490444	+	0	NA	Intergenic	MER76|LTR|ERVL	-713767	NM_022881	64214	Mm.253927	NM_022881	ENSMUSG00000026357	Rgs18	-	regulator of G-protein signaling 18	protein-coding	nan	0.887	0.792	0.663	0.635	0.265	0.682	0.782	0.725	0.569	0.749	0.658	0.421	0.834	0.934	0.781	1.208	1.019	2.959	3.377	1.378	3.632	1.315	0.653	0.318
15754	chrX	73073568	73081515	+	0	NA	intron (NM_001081642, intron 6 of 8)	intron (NM_001081642, intron 6 of 8)	4966	NM_001081642	434794	Mm.104764	NM_001081642	ENSMUSG00000079845	Xlr4a	-	X-linked lymphocyte-regulated 4A	protein-coding	4.090	0.338	0.282	3.101	5.289	3.717	3.524	4.335	4.729	4.384	3.273	1.913	4.728	5.607	4.557	4.467	3.360	5.661	0.744	0.737	0.459	0.436	0.554	0.473	2.504
9557	chr3	96059177	96063362	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-2814	NM_013841	22365	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	3.661	1.589	0.732	1.460	1.367	1.143	3.023	4.976	1.753	1.567	3.346	2.205	5.278	6.905	3.138	2.199	4.058	2.900	0.906	1.205	1.035	0.759	1.006	0.935	2.348
4430	chr13	114033535	114035184	+	0	NA	intron (NM_172595, intron 4 of 4)	intron (NM_172595, intron 4 of 4)	117233	NR_045836	319803	Mm.386896	NM_177004		A430090L17Rik	-	RIKEN cDNA A430090L17 gene	ncRNA	1.018	4.450	5.206	0.683	0.958	0.987	0.881	0.145	0.172	0.107	0.104	0.041	0.310	0.613	0.450	0.008	0.141	0.513	0.096	0.138	0.074	0.034	0.104	0.208	nan
460	chr1	93944581	93949409	+	0	NA	Intergenic	RLTR9C|LTR|ERVK	28558	NM_001205249	100041596	Mm.417228	NM_001205249	ENSMUSG00000093805	Gm9994	ENSMUSG00000056307|Gal3ST-2|Gal3st2	predicted gene 9994	protein-coding	8.420	nan	0.723	4.330	2.421	0.848	3.860	3.951	3.898	4.604	4.556	2.394	5.346	3.830	3.883	5.432	4.381	5.564	nan	1.996	0.785	5.046	2.405	1.041	4.573
2449	chr11	74639427	74648764	+	0	NA	Intergenic	Intergenic	-5400	NM_001081158	74148	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	6.462	10.158	3.550	8.068	2.827	1.221	nan	8.013	4.214	5.972	4.613	2.802	5.113	6.973	6.076	7.902	4.328	5.946	3.505	2.093	nan	4.370	2.277	2.106	7.730
4627	chr14	46147305	46151414	+	0	NA	Intergenic	Intergenic	65332	NR_002875	218963	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo	7.096	1.282	0.644	9.671	5.462	4.032	5.955	8.004	4.251	10.190	1.163	1.359	6.333	9.202	7.025	8.535	5.088	7.945	2.554	2.216	2.360	3.315	2.613	3.386	10.507
10278	chr4	94765196	94767976	+	0	NA	intron (NM_001290549, intron 1 of 22)	intron (NM_001290549, intron 1 of 22)	27297	NM_001290551	21687	Mm.14313	NM_013690	ENSMUSG00000006386	Tek	AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2	endothelial-specific receptor tyrosine kinase	protein-coding	3.254	nan	0.717	3.576	3.865	1.705	3.601	3.662	2.181	nan	1.913	1.906	2.893	4.160	nan	4.407	1.958	3.069	1.204	0.498	0.565	nan	0.795	0.601	3.372
14035	chr8	12994201	13002590	+	0	NA	exon (NM_178076, exon 8 of 31)	exon (NM_178076, exon 8 of 31)	-27639	NM_010172	14068	Mm.4827	NM_010172	ENSMUSG00000031443	F7	AI132620|Cf7|FVII	coagulation factor VII	protein-coding	2.623	0.373	0.188	2.452	2.059	0.777	1.439	2.940	2.097	3.201	0.401	0.381	3.887	4.803	2.738	5.107	3.631	2.057	3.077	1.710	1.691	6.238	0.984	0.648	5.496
244	chr1	64124031	64127856	+	0	NA	Intergenic	B3|SINE|B2	-4554	NM_033563	93691	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	5.481	1.266	0.539	5.368	3.052	1.030	2.272	2.996	2.999	3.517	2.496	1.102	3.651	4.849	2.857	4.675	nan	4.545	1.323	1.013	0.588	0.929	1.098	0.475	3.663
4107	chr13	49072890	49075629	+	0	NA	intron (NM_029361, intron 12 of 27)	B3A|SINE|B2	74069	NM_029361	75607	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	7.437	2.958	2.792	4.684	8.922	7.096	6.385	5.995	4.672	4.335	4.577	1.948	6.323	10.011	4.774	4.201	4.239	nan	5.590	5.151	4.884	5.304	5.968	6.327	4.188
7723	chr19	34590099	34596627	+	0	NA	3' UTR (NM_001101605, exon 2 of 2)	3' UTR (NM_001101605, exon 2 of 2)	6064	NM_001110517	667373	Mm.371956	NM_001101605	ENSMUSG00000079339	Ifit1bl1	Gm14446|Ifit1c|OTTMUSG00000016644	interferon induced protein with tetratricpeptide repeats 1B like 1	protein-coding	5.028	1.936	0.904	2.334	2.045	0.977	5.641	7.336	3.714	4.174	1.378	1.656	5.479	6.462	6.113	5.445	5.456	4.816	0.493	0.755	0.317	0.601	0.419	0.265	5.379
9999	chr4	40861389	40862673	+	0	NA	Intergenic	B1_Mur4|SINE|Alu	-7494	NM_022305	14595	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	2.743	0.685	0.449	1.712	1.408	0.941	3.460	5.116	2.625	1.649	3.647	2.672	3.891	3.631	4.499	2.911	1.579	2.402	1.676	0.917	0.685	1.008	0.494	0.594	1.696
8744	chr2	145651856	145662009	+	0	NA	Intergenic	Intergenic	-44263	NR_033220	408057	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	6.473	1.028	0.861	3.656	5.330	3.166	5.709	5.220	4.198	5.213	4.199	2.091	3.327	3.874	4.189	4.178	3.708	5.653	nan	1.922	1.374	1.620	2.501	2.190	4.572
8411	chr2	84543214	84546644	+	0	NA	Intergenic	Intergenic	-38056	NR_046046	672763	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	OTTMUSG00000013441	predicted gene 13710	ncRNA	6.383	1.185	0.804	2.546	3.388	1.980	5.745	9.254	4.332	3.853	6.069	3.461	6.505	6.633	6.137	6.067	6.836	5.892	1.018	0.733	0.392	0.754	0.757	0.715	5.571
11380	chr5	81448764	81451344	+	0	NA	intron (NM_001347371, intron 4 of 23)	L1Md_A|LINE|L1	428461	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	2.201	1.069	0.243	5.130	0.898	0.580	1.586	1.658	1.952	3.220	1.237	1.319	0.810	2.214	2.045	nan	1.249	2.221	0.829	2.744	4.417	4.422	0.634	1.285	3.500
4838	chr14	73781060	73790329	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	232908	NM_011506	20916	Mm.38951	NM_011506	ENSMUSG00000022110	Sucla2	4930547K18Rik|A-SCS	succinate-Coenzyme A ligase, ADP-forming, beta subunit	protein-coding	8.343	5.205	2.356	7.823	4.886	3.470	4.917	9.336	6.097	7.618	8.333	6.285	5.642	7.641	6.262	7.043	5.188	7.572	4.761	2.636	2.414	3.329	2.836	2.598	6.939
2811	chr11	101487859	101489588	+	0	NA	TTS (NM_009764)	TTS (NM_009764)	20385	NM_009708	11858	Mm.378883	NM_009708	ENSMUSG00000001313	Rnd2	Arhn|Rohn	Rho family GTPase 2	protein-coding	11.484	9.451	7.233	6.593	7.417	4.159	7.336	9.569	7.072	9.520	7.546	4.611	7.116	12.306	7.881	9.172	10.087	7.964	5.742	nan	5.290	5.185	8.631	6.207	9.266
6672	chr17	46377602	46386259	+	0	NA	Intergenic	ID_B1|SINE|B4	-1836	NM_207671	57908	Mm.439916	NM_021346	ENSMUSG00000015597	Zfp318	2610034E08Rik|D530032D06Rik|TZF|Znf318	zinc finger protein 318	protein-coding	7.060	3.766	1.415	6.271	3.126	1.846	8.395	6.926	5.389	7.993	2.189	1.922	7.023	7.519	8.413	11.008	7.300	8.320	1.730	1.290	1.388	2.690	1.642	1.423	15.325
5149	chr15	38530213	38533661	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-12671	NM_018745	54375	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	6.351	4.410	3.378	2.549	3.440	2.839	7.201	6.320	4.579	4.911	3.551	2.149	7.570	6.193	5.232	5.596	6.888	4.356	1.487	2.507	1.796	5.449	0.566	0.868	5.184
12872	chr6	147365109	147370067	+	0	NA	Intergenic	MLT1J-int|LTR|ERVL-MaLR	-103575	NM_008970	19227	Mm.28440	NM_008970	ENSMUSG00000048776	Pthlh	PLP|PTH-like|Pthrp	parathyroid hormone-like peptide	protein-coding	nan	0.452	0.369	nan	0.393	0.267	0.673	nan	0.511	nan	8.170	6.998	nan	0.678	0.869	nan	0.996	0.683	0.879	nan	0.529	nan	0.786	0.595	nan
10431	chr4	118080536	118084285	+	0	NA	intron (NM_009176, intron 2 of 11)	LTR16A|LTR|ERVL	52536	NM_001285520	20441	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	7.216	5.919	2.515	6.444	4.537	2.531	5.492	5.747	4.112	7.677	3.562	2.074	5.195	7.794	6.241	7.758	5.107	6.196	3.357	2.994	2.457	4.403	3.525	2.507	9.308
4901	chr14	79931488	79938031	+	0	NA	Intergenic	Intergenic	-65543	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding	7.880	11.257	5.336	6.095	6.714	4.018	6.030	7.321	6.108	5.568	3.554	2.888	5.443	7.536	6.910	7.365	4.848	6.689	1.372	2.028	1.503	0.911	0.992	1.044	6.123
6348	chr17	13991168	13993673	+	0	NA	Intergenic	Intergenic	44047	NM_001122977	635895	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	4.731	0.763	0.364	2.007	0.581	0.201	1.464	nan	3.533	3.760	7.656	1.401	2.242	1.362	2.049	4.780	2.253	4.291	0.887	0.335	0.323	0.930	0.490	0.302	6.204
1386	chr10	67652962	67656372	+	0	NA	Intergenic	Intergenic	-105712	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	6.913	2.458	1.902	4.897	5.151	2.579	2.973	3.788	5.134	5.105	3.521	2.564	2.898	3.506	3.430	4.170	4.694	nan	3.288	3.304	1.794	3.138	1.748	1.146	2.286
8883	chr2	156998770	157000003	+	0	NA	intron (NM_025853, intron 6 of 10)	B1_Mus1|SINE|Alu	-7275	NM_180956	29812	Mm.279256	NM_013865	ENSMUSG00000027634	Ndrg3	4833415O14Rik|AI747193|Ndr3	N-myc downstream regulated gene 3	protein-coding	5.479	1.095	1.063	1.431	2.224	1.902	2.136	2.033	nan	1.597	1.271	0.239	3.296	3.423	1.974	3.280	2.647	3.364	nan	0.736	1.049	0.634	1.327	0.871	3.166
1536	chr10	82320231	82324806	+	0	NA	Intergenic	RMER16-int|LTR|ERVK	-81243	NM_001105557	237411		NM_172789	ENSMUSG00000062931	Zfp938	B230315N10Rik	zinc finger protein 938	protein-coding	9.902	7.813	3.190	6.834	4.537	2.784	5.415	8.569	4.765	6.037	5.636	3.036	5.350	8.324	7.486	8.624	6.584	7.723	nan	3.127	2.955	6.196	2.880	2.519	11.474
7851	chr19	47527955	47536056	+	0	NA	intron (NM_175360, intron 2 of 9)	Lx|LINE|L1	5015	NM_175360	108689	Mm.218048	NM_175360	ENSMUSG00000042694	Obfc1	0610009H20Rik|2310057J23Rik|AAF-44|AAF44|AI413458|RPA-32	oligonucleotide/oligosaccharide-binding fold containing 1	protein-coding	2.754	10.050	4.065	4.549	1.994	0.804	1.196	1.021	2.180	2.601	1.673	0.938	0.849	1.473	1.585	2.659	1.705	nan	0.576	0.909	0.578	0.922	0.688	0.533	2.661
452	chr1	93127643	93129353	+	0	NA	Intergenic	Intergenic	-6742	NM_016702	11611	Mm.7457	NM_016702	ENSMUSG00000026272	Agxt	AGT|Agt1|Agxt1|SPT	alanine-glyoxylate aminotransferase	protein-coding	5.094	nan	0.885	3.433	4.868	5.223	3.077	2.963	3.638	4.261	3.067	1.940	3.294	4.027	2.998	4.583	4.279	3.932	4.017	2.952	3.195	nan	5.847	6.815	nan
295	chr1	73998839	74012127	+	0	NA	intron (NM_027884, intron 4 of 34)	intron (NM_027884, intron 4 of 34)	118964	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	5.067	1.430	0.565	5.289	3.284	1.731	3.036	3.742	3.233	4.173	1.213	0.899	2.849	5.497	4.587	7.434	4.065	5.608	nan	nan	0.571	1.081	nan	0.577	6.223
12056	chr6	14648503	14652628	+	0	NA	Intergenic	L1Md_A|LINE|L1	104709	NM_080464	140491	Mm.209429	NM_080464	ENSMUSG00000042717	Ppp1r3a	GM|RG1|RGL	protein phosphatase 1, regulatory (inhibitor) subunit 3A	protein-coding	2.607	nan	0.207	1.561	1.933	1.007	4.100	1.989	nan	2.758	0.377	0.818	5.934	2.992	4.613	nan	5.591	4.829	0.748	0.396	0.208	0.243	0.573	0.345	1.411
7051	chr18	20445945	20447749	+	0	NA	exon (NM_181564, exon 3 of 16)	exon (NM_181564, exon 3 of 16)	10672	NM_181564	16769	Mm.358619	NM_181564	ENSMUSG00000001804	Dsg4	CDHF13|lah	desmoglein 4	protein-coding	7.725	0.761	0.394	1.148	1.008	0.553	7.823	4.552	2.757	2.025	1.056	0.700	8.083	7.214	4.907	5.138	4.991	4.468	0.738	0.992	0.184	0.891	0.730	0.370	4.511
3956	chr13	34423570	34425133	+	0	NA	Intergenic	Intergenic	-79169	NM_001033167	73102	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	2.409	1.123	0.431	1.379	2.741	0.876	2.888	5.591	nan	2.038	1.463	1.682	1.958	3.779	2.405	2.355	3.102	3.317	0.759	1.011	0.355	0.777	0.716	0.573	1.904
7377	chr18	74508135	74511327	+	0	NA	intron (NR_045368, intron 3 of 3)	L1Md_F2|LINE|L1	21393	NR_045368	73606	Mm.444734	NR_045368		1700120E14Rik	-	RIKEN cDNA 1700120E14 gene	ncRNA	2.941	nan	0.863	2.103	6.241	3.250	2.821	2.046	1.578	nan	1.218	0.674	2.405	3.408	2.014	2.123	1.894	2.355	1.078	nan	1.081	1.143	1.212	1.001	2.093
14306	chr8	73138520	73140211	+	0	NA	intron (NM_001317391, intron 3 of 15)	intron (NM_001317391, intron 3 of 15)	122853	NR_039551	100628574		NR_039551	ENSMUSG00000093140	Mir28b	mmu-mir-28b	microRNA 28b	ncRNA	5.340	3.622	2.598	3.288	3.049	1.970	nan	3.309	nan	2.835	2.168	0.876	2.440	3.372	2.633	nan	2.801	2.719	0.822	1.397	1.050	nan	0.769	0.723	4.507
12342	chr6	82746802	82750240	+	0	NA	intron (NM_013820, intron 3 of 17)	intron (NM_013820, intron 3 of 17)	25933	NM_013820	15277	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	6.913	1.259	1.273	2.229	3.417	1.847	9.372	7.640	2.867	4.102	3.229	1.831	3.033	6.818	6.461	5.979	8.409	2.362	1.101	2.349	1.812	0.529	1.588	1.080	nan
1618	chr10	93840455	93841729	+	0	NA	intron (NM_001206851, intron 1 of 6)	B1_Mur1|SINE|Alu	9537	NM_001206851	327799	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	3.549	5.100	0.598	5.594	1.235	0.334	1.879	3.610	3.243	3.403	2.307	1.645	3.796	3.132	4.428	5.530	1.188	4.193	1.665	0.606	0.577	nan	0.268	0.252	5.329
77	chr1	34176972	34179767	+	0	NA	exon (NM_010081, exon 23 of 24)	exon (NM_010081, exon 23 of 24)	18039	NM_010081	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	6.126	1.926	0.723	8.722	3.867	1.693	3.225	3.271	6.169	5.559	6.764	4.058	7.658	6.216	5.533	7.219	1.445	7.564	1.692	1.122	0.553	1.757	0.909	0.597	6.600
541	chr1	127421330	127423641	+	0	NA	intron (NM_145128, intron 12 of 17)	intron (NM_145128, intron 12 of 17)	217499	NM_145128	107895	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	6.291	nan	0.563	3.997	3.590	1.385	5.431	5.629	4.045	4.035	6.929	4.646	5.602	5.629	4.803	9.271	4.303	6.144	nan	1.085	0.442	1.307	1.715	0.922	3.499
12985	chr7	20330100	20343683	+	0	NA	Intergenic	Intergenic	-2826	NM_001167159	100043043	Mm.482053	NM_001167159	ENSMUSG00000093871	Gm4187	Vmn1r146	predicted gene 4187	protein-coding	7.048	1.642	0.823	6.524	5.406	3.372	8.731	9.648	4.546	6.876	2.828	2.347	7.059	9.384	7.113	8.013	6.718	7.531	2.620	2.260	2.073	2.749	2.761	2.182	9.968
8660	chr2	129000975	129005403	+	0	NA	intron (NM_178404, intron 5 of 11)	URR1B|DNA|hAT-Charlie	35787	NM_178404	78751	Mm.26377	NM_178404	ENSMUSG00000042851	Zc3h6	4631426G04Rik|4833425H18Rik|AU024389|AW060453|Zc3hdc6|mKIAA2035	zinc finger CCCH type containing 6	protein-coding	3.159	2.583	1.342	3.107	2.241	1.601	2.405	4.713	2.681	2.205	6.504	4.717	2.432	2.581	2.196	nan	2.190	3.344	nan	1.332	0.997	0.599	0.834	0.618	2.279
6873	chr17	79746891	79749119	+	0	NA	Intergenic	RMER6C|LTR|ERVK	-32964	NM_009994	13078	Mm.214016	NM_009994	ENSMUSG00000024087	Cyp1b1	CP1B|P4501b1	cytochrome P450, family 1, subfamily b, polypeptide 1	protein-coding	5.126	5.117	1.839	4.968	1.948	0.987	4.964	4.563	3.637	3.909	3.167	1.154	4.262	5.165	5.844	8.460	3.167	6.079	0.873	0.496	0.451	1.156	0.275	0.084	6.902
14899	chr9	21313356	21315713	+	0	NA	Intergenic	ID_B1|SINE|B4	-2201	NM_001110300	11768	Mm.22239	NM_009678	ENSMUSG00000003309	Ap1m2	D9Ertd818e|[m]1B|mu1B	adaptor protein complex AP-1, mu 2 subunit	protein-coding	5.083	7.336	1.842	4.978	1.890	0.909	4.821	4.577	3.594	5.084	5.237	1.372	5.076	6.355	6.353	7.076	3.241	4.837	3.913	2.064	1.061	5.018	2.385	1.892	8.290
8827	chr2	153167893	153180346	+	0	NA	intron (NM_133847, intron 1 of 17)	RLTR17B_Mm|LTR|ERVK	12818	NM_133847	99237	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	9.966	8.854	5.197	6.241	6.173	4.376	7.241	8.895	nan	7.273	3.926	3.162	7.995	8.319	6.646	8.703	8.615	nan	nan	2.914	2.560	2.906	3.590	3.362	8.265
3890	chr13	24191028	24197929	+	0	NA	intron (NM_001311122, intron 2 of 37)	intron (NM_001311122, intron 2 of 37)	86312	NM_001311122	68732	Mm.211047	NM_026825	ENSMUSG00000021338	Carmil1	1110037D04Rik|AI425970|CARMIL|CARML1|D130057M20|Lrrc16|Lrrc16a	capping protein regulator and myosin 1 linker 1	protein-coding	2.913	0.606	0.461	1.905	1.652	0.855	1.732	2.527	2.936	3.251	2.739	1.946	3.112	4.174	1.708	1.835	1.222	3.755	1.379	0.562	0.511	1.087	0.849	0.725	1.865
14679	chr8	122558406	122560533	+	0	NA	Intergenic	Intergenic	-8140	NM_001037298	234839	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	4.146	0.743	0.527	2.861	2.562	2.174	2.166	3.891	2.129	2.582	1.350	1.228	1.391	4.675	1.619	1.466	2.419	2.339	1.080	1.280	1.345	2.061	0.813	0.627	1.963
10814	chr4	140826804	140842621	+	0	NA	intron (NM_011059, intron 1 of 15)	intron (NM_011059, intron 1 of 15)	11066	NM_011059	18599	Mm.20854	NM_011059	ENSMUSG00000025329	Padi1	AV236283|Pdi1	peptidyl arginine deiminase, type I	protein-coding	nan	1.195	0.633	5.449	7.484	5.592	8.169	5.913	nan	4.651	5.721	3.056	5.794	11.376	6.600	7.019	3.754	nan	1.383	1.387	1.454	2.054	nan	1.374	7.983
10272	chr4	94417422	94419984	+	0	NA	Intergenic	Intergenic	138093	NM_026368	67770	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	3.653	nan	0.547	3.616	2.911	2.894	3.651	3.064	3.616	2.805	1.780	2.666	2.535	3.226	nan	4.013	2.535	2.788	6.210	10.292	10.036	5.271	4.974	4.344	3.921
8072	chr2	29571956	29573156	+	0	NA	Intergenic	Intergenic	-47164	NM_054050	107746	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	6.135	2.116	0.830	2.197	2.893	2.130	5.338	5.403	2.863	3.019	2.921	0.923	4.802	4.513	3.961	5.590	7.187	5.474	0.995	1.340	0.982	0.738	0.392	0.958	8.223
897	chr1	174234915	174244837	+	0	NA	intron (NM_011465, intron 43 of 51)	intron (NM_011465, intron 43 of 51)	11100	NM_146715	258710	Mm.377647	NM_146715	ENSMUSG00000050788	Olfr419	MOR267-6	olfactory receptor 419	protein-coding	7.575	4.889	1.728	4.376	4.032	2.063	6.667	5.854	4.071	5.819	5.244	2.562	7.116	7.814	5.705	10.172	6.061	5.346	4.261	2.188	1.792	3.730	4.610	3.383	7.505
7897	chr19	56735203	56740333	+	0	NA	Intergenic	Intergenic	15396	NM_007419	11554	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	5.825	nan	0.427	5.499	4.394	2.097	7.218	3.305	3.786	5.680	4.479	2.189	5.534	6.280	6.829	7.404	6.183	8.515	0.366	0.849	0.546	1.224	0.687	0.450	9.370
10672	chr4	134043471	134045282	+	0	NA	Intergenic	Intergenic	-24076	NM_001162970	230806	Mm.240080	NM_001162970	ENSMUSG00000012123	Aim1l	-	absent in melanoma 1-like	protein-coding	2.415	1.065	0.491	4.754	3.699	2.558	3.903	4.192	nan	3.339	0.398	0.998	3.969	5.348	3.700	5.004	2.690	4.543	1.199	0.564	0.861	1.249	nan	0.832	4.579
14404	chr8	86520257	86523070	+	0	NA	intron (NM_172912, intron 21 of 28)	intron (NM_172912, intron 21 of 28)	44927	NM_172912	244562	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding	5.287	8.233	2.510	7.782	2.948	2.556	5.545	6.916	nan	13.343	3.113	3.341	6.284	6.976	8.123	10.277	6.012	8.359	4.739	2.138	4.717	8.086	3.695	8.347	14.158
3671	chr12	103707476	103709156	+	0	NA	Intergenic	Intergenic	-12787	NM_026687	68348	Mm.20149	NM_026687	ENSMUSG00000021081	Serpina1f	0610012A11Rik|AI327419|Serpina2|epserin	serine (or cysteine) peptidase inhibitor, clade A, member 1F	protein-coding	7.291	5.386	1.606	nan	2.846	1.588	4.792	nan	3.622	nan	3.058	2.562	5.036	nan	6.352	7.876	4.847	6.017	2.628	1.161	1.666	2.926	2.353	1.665	9.060
3871	chr13	20992476	20994861	+	0	NA	intron (NM_012054, intron 13 of 20)	intron (NM_012054, intron 13 of 20)	79631	NM_146535	258528	Mm.377554	NM_146535	ENSMUSG00000042869	Olfr1370	MOR256-14	olfactory receptor 1370	protein-coding	2.330	0.661	0.373	1.651	0.701	0.351	2.627	1.591	1.779	2.309	0.307	0.365	3.551	4.508	3.871	4.360	2.056	3.766	2.199	0.637	0.490	2.082	1.958	1.051	5.581
3911	chr13	29041043	29045529	+	0	NA	Intergenic	Intergenic	27031	NR_045075	77920	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA	10.070	2.054	1.160	7.977	3.703	3.154	12.900	8.517	5.368	10.451	7.180	6.183	8.684	9.359	11.327	11.303	9.363	11.347	8.037	5.778	6.279	8.467	7.068	10.468	19.125
7231	chr18	50209045	50215789	+	0	NA	Intergenic	Intergenic	-65952	NM_001004061	225497	Mm.329435	NM_001004061	ENSMUSG00000035420	Fam170a	Gm93|Znfd	family with sequence similarity 170, member A	protein-coding	3.654	10.667	4.493	2.651	1.183	0.657	1.955	2.376	1.834	2.271	3.550	1.588	1.963	2.080	2.012	1.591	1.167	nan	0.959	1.207	0.741	0.956	0.826	0.520	4.988
9076	chr2	173892966	173894307	+	0	NA	Intergenic	L1Md_F2|LINE|L1	156065	NM_019806	56491	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	2.454	0.614	0.621	0.529	1.074	0.560	4.652	3.781	2.906	2.448	2.666	2.291	4.302	3.639	3.009	3.769	2.949	2.769	0.833	0.435	0.183	0.794	1.160	0.773	nan
2584	chr11	86663649	86668331	+	0	NA	intron (NM_029478, intron 1 of 11)	intron (NM_029478, intron 1 of 11)	9919	NR_106195	102465902		NR_106195	ENSMUSG00000099324	Mir8115	Gm28012|mmu-mir-8115	microRNA 8115	ncRNA	4.990	0.751	0.443	nan	3.900	2.360	5.664	5.199	5.253	5.669	3.065	4.585	6.472	7.585	7.238	5.931	3.775	7.031	1.893	0.770	0.911	nan	1.394	1.055	4.695
14640	chr8	119688550	119692692	+	0	NA	Intergenic	Intergenic	-9388	NM_026922	69047	Mm.46251	NM_026922	ENSMUSG00000034112	Atp2c2	1810010G06Rik|Spca2|mKIAA0703	ATPase, Ca++ transporting, type 2C, member 2	protein-coding	5.060	0.684	0.463	4.261	4.002	2.815	4.109	3.927	4.370	5.853	1.212	1.717	6.792	8.002	5.457	nan	5.455	7.586	0.458	0.873	0.530	0.887	0.757	0.707	7.974
10160	chr4	62345145	62348761	+	0	NA	intron (NM_001045528, intron 2 of 27)	RMER5|LTR|ERV1	13595	NM_001045528	338355	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	3.596	5.645	1.799	2.480	2.212	0.676	6.288	6.903	2.252	2.831	6.705	3.361	4.572	5.595	3.613	5.170	2.728	3.602	nan	2.203	1.218	2.877	0.740	0.335	5.325
6473	chr17	28375042	28376849	+	0	NA	Intergenic	Intergenic	-10802	NM_021478	22157	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	1.127	1.313	1.297	1.039	1.674	1.434	1.823	1.840	1.168	1.016	1.199	0.508	0.668	1.251	0.904	1.247	1.144	0.779	4.575	3.729	5.050	5.244	5.349	5.974	1.535
2722	chr11	97294084	97303475	+	0	NA	Intergenic	B2_Mm1a|SINE|B2	-16937	NM_025927	67036	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	7.540	nan	0.917	8.102	4.972	3.696	5.073	6.510	4.206	6.484	5.709	2.792	4.390	7.264	5.198	7.179	4.456	6.034	2.542	nan	2.038	2.682	nan	nan	7.328
9422	chr3	87180403	87184434	+	0	NA	Intergenic	Lx7|LINE|L1	-7671	NM_130867	170643	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kin of IRRE like (Drosophila)	protein-coding	1.110	9.112	8.246	0.759	0.803	0.560	0.765	1.977	0.616	0.952	1.074	0.244	0.997	1.365	1.038	nan	1.351	0.855	nan	2.597	1.255	0.931	1.945	1.272	0.564
13602	chr7	118223886	118228451	+	0	NA	intron (NM_001031814, intron 1 of 62)	ORR1C2|LTR|ERVL-MaLR	17469	NM_001031814	233789	Mm.309053	NM_177180	ENSMUSG00000030655	Smg1	2610207I05Rik|5430435M13Rik|C130002K18Rik|mKIAA0421	SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)	protein-coding	8.540	11.618	4.581	10.306	5.969	4.599	7.728	9.684	6.414	11.312	7.219	4.115	9.400	9.750	9.013	8.574	6.884	9.512	6.888	3.365	4.212	6.663	4.073	5.787	12.243
2923	chr11	107303053	107316966	+	0	NA	intron (NM_145823, intron 4 of 9)	B1_Mur2|SINE|Alu	-120628	NM_001161329	68979	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	2.255	13.368	8.471	nan	1.522	0.969	0.884	2.321	nan	nan	1.464	1.389	0.707	nan	1.045	1.378	1.302	nan	1.203	2.314	1.843	nan	1.058	0.923	1.403
5200	chr15	58210973	58213891	+	0	NA	intron (NM_026346, intron 1 of 8)	intron (NM_026346, intron 1 of 8)	2460	NM_026346	67731	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0.609	1.691	1.303	nan	0.205	0.386	nan	2.044	nan	nan	7.113	2.496	0.839	0.526	0.563	nan	0.793	0.602	1.853	1.702	2.174	1.637	1.543	1.693	0.434
8553	chr2	118345267	118349290	+	0	NA	intron (NM_201367, intron 1 of 2)	L1_Mus1|LINE|L1	26141	NM_201367	381413	Mm.70979	NM_201367	ENSMUSG00000040133	Gpr176	Gm1012	G protein-coupled receptor 176	protein-coding	8.009	2.997	1.350	4.086	2.609	1.527	7.635	6.908	4.190	4.368	2.696	0.925	7.974	6.741	6.052	8.958	6.945	6.400	1.939	2.151	2.000	1.882	2.322	1.834	8.853
416	chr1	90327793	90331389	+	0	NA	Intergenic	(TGGA)n|Simple_repeat|Simple_repeat	125611	NM_007722	12778	Mm.6522	NM_007722	ENSMUSG00000044337	Ackr3	AW541270|CXC-R7|CXCR-7|Cmkor1|Cxcr7|RDC-1|Rdc1	atypical chemokine receptor 3	protein-coding	4.598	0.501	0.655	1.819	2.956	2.065	2.975	2.275	3.875	4.256	6.886	5.608	6.698	4.288	1.939	4.195	4.184	3.720	0.990	1.298	0.763	nan	1.529	1.163	1.654
2950	chr11	112110657	112114387	+	0	NA	Intergenic	Intergenic	598834	NR_024085	217294	Mm.297761	NM_146031	ENSMUSG00000041674	BC006965	-	cDNA sequence BC006965	ncRNA	0.398	0.524	0.250	nan	0.077	0.032	0.648	1.048	nan	nan	7.436	3.797	0.720	nan	0.512	0.605	0.705	nan	0.655	0.424	0.258	nan	0.189	0.128	0.421
14329	chr8	74134526	74137792	+	0	NA	Intergenic	MT2C_Mm|LTR|ERVL	-737015	NM_027837	71597	Mm.158735	NM_027837	ENSMUSG00000031621	Isx	9130012O13Rik|Pix-1	intestine specific homeobox	protein-coding	6.739	8.162	2.438	7.504	2.914	2.088	nan	9.740	nan	7.822	4.408	2.154	7.223	6.081	7.164	11.216	5.365	7.459	2.195	1.670	1.776	nan	1.112	1.934	12.957
13871	chr7	147155581	147160264	+	0	NA	Intergenic	Intergenic	1843087	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	nan	nan	1.199	nan	1.049	0.581	0.654	1.838	nan	1.488	8.126	2.960	0.969	1.379	1.018	1.261	0.990	1.679	1.216	0.949	1.090	0.783	nan	0.423	nan
100	chr1	36643735	36654188	+	0	NA	intron (NM_001126046, intron 3 of 14)	(TC)n|Simple_repeat|Simple_repeat	34222	NM_001126046	381337	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	4.445	2.397	1.274	2.173	0.883	0.572	2.382	1.897	1.785	2.113	1.355	0.762	2.964	3.890	2.302	5.541	3.749	1.957	2.442	1.806	2.046	2.325	2.563	2.591	4.491
2405	chr11	70428018	70429226	+	0	NA	Intergenic	RLTR17B_Mm|LTR|ERVK	-3958	NM_001271360	216869	Mm.203747	NM_145429	ENSMUSG00000060216	Arrb2	AI326910|AW122872	arrestin, beta 2	protein-coding	5.213	6.904	2.508	4.711	1.305	0.266	2.392	4.211	2.739	3.431	1.559	1.159	2.567	4.067	4.054	4.625	2.974	3.931	2.152	1.242	0.743	4.122	1.418	0.554	5.194
11937	chr5	145132819	145135126	+	0	NA	intron (NM_001033313, intron 3 of 5)	intron (NM_001033313, intron 3 of 5)	6117	NM_001033313	231887	Mm.188851	NM_001033313	ENSMUSG00000029623	Pdap1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding	4.026	0.635	0.439	3.633	3.190	2.837	4.598	5.698	4.827	5.362	3.226	3.957	5.544	7.129	6.727	6.831	5.096	4.772	2.554	1.250	0.944	1.570	2.021	1.116	nan
4710	chr14	57658937	57661549	+	0	NA	intron (NM_020506, intron 1 of 22)	B1_Mur2|SINE|Alu	4713	NM_020506	57258	Mm.202747	NM_020506	ENSMUSG00000021952	Xpo4	B430309A01Rik|mKIAA1721	exportin 4	protein-coding	3.893	nan	0.637	1.518	0.981	0.846	6.563	4.428	2.493	2.309	0.268	0.379	4.684	6.073	5.936	5.093	4.336	3.102	0.563	0.517	0.428	0.198	0.296	0.324	6.460
14022	chr8	12620879	12629227	+	0	NA	exon (NM_198031, exon 18 of 22)	exon (NM_198031, exon 18 of 22)	47047	NM_198031	259279	Mm.142095	NM_198031	ENSMUSG00000000759	Tubgcp3	GCP3|Spc98p	tubulin, gamma complex associated protein 3	protein-coding	0.367	1.083	0.403	0.353	0.171	0.099	0.476	0.428	0.516	0.512	0.350	0.216	0.214	0.370	0.446	0.826	0.463	0.566	3.829	2.581	1.979	5.605	2.498	1.840	0.673
12977	chr7	20156933	20159653	+	0	NA	Intergenic	L1Md_F2|LINE|L1	10084	NM_001166723	620537	Mm.480273	NM_001166723	ENSMUSG00000094011	Vmn1r94	EG620537|Gm6160	vomeronasal 1 receptor 94	protein-coding	9.885	8.307	3.883	7.941	8.171	5.330	13.504	12.012	5.591	7.886	6.549	5.486	8.045	10.985	9.760	9.801	9.555	10.333	4.050	3.698	4.216	3.806	5.482	6.458	13.417
11838	chr5	137537423	137538546	+	0	NA	Intergenic	Intergenic	-4755	NM_010312	14693	Mm.30141	NM_010312	ENSMUSG00000029713	Gnb2	Gnb-2	guanine nucleotide binding protein (G protein), beta 2	protein-coding	2.721	0.961	0.963	1.601	3.371	2.314	3.767	3.449	2.582	2.935	1.292	2.153	1.660	3.561	2.639	1.536	1.980	2.961	2.019	2.097	1.068	1.365	nan	2.697	1.211
2232	chr11	55218447	55220905	+	0	NA	intron (NM_153139, intron 4 of 10)	intron (NM_153139, intron 4 of 10)	15336	NM_153139	215335	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	5.038	1.742	0.414	5.692	4.272	2.799	3.436	3.059	2.930	3.303	4.400	1.467	2.310	4.468	3.822	5.168	1.679	5.244	nan	0.385	0.870	0.720	0.313	0.255	7.217
8245	chr2	52359580	52361777	+	0	NA	Intergenic	Intergenic	-21880	NM_010889	17996	Mm.389247	NM_010889	ENSMUSG00000026950	Neb	AI595938	nebulin	protein-coding	5.261	1.021	0.640	2.494	4.142	3.045	6.774	11.633	3.452	6.701	0.901	1.406	4.101	4.165	3.818	6.157	7.701	2.815	1.031	1.660	1.528	1.545	1.261	0.921	4.773
10455	chr4	119820910	119822549	+	0	NA	intron (NM_010657, intron 1 of 8)	intron (NM_010657, intron 1 of 8)	7051	NM_010657	16656	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	3.462	1.280		5.537	5.023	2.666	2.317	3.433	2.920	3.446	2.135	3.167	2.362	4.254	3.737	4.125	1.290	4.959	1.030	1.233	0.916	2.425	1.525	1.269	5.345
8751	chr2	145926346	145931386	+	0	NA	intron (NM_025820, intron 5 of 13)	intron (NM_025820, intron 5 of 13)	5834	NM_025820	66877	Mm.248755	NM_025820	ENSMUSG00000001767	Crnkl1	1200013P10Rik|5730590A01Rik|C80326|crn	Crn, crooked neck-like 1 (Drosophila)	protein-coding	0.365	0.382	0.478	0.210	0.198	0.108	0.466	0.308	0.301	0.221	0.296	0.256	0.110	0.207	0.218	0.528	0.505	0.433	nan	2.104	1.741	4.789	1.127	1.040	0.508
3642	chr12	102190604	102192728	+	0	NA	intron (NM_172152, intron 2 of 16)	intron (NM_172152, intron 2 of 16)	62247	NM_172152	238384	Mm.312448	NM_172152	ENSMUSG00000041771	Slc24a4	A930002M03Rik|AW492432|NCKX4	solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	protein-coding	3.288	1.775	0.548	1.643	1.154	1.216	3.768	1.621	1.675	1.848	0.790	0.461	2.203	4.351	3.610	4.736	2.786	3.187	0.708	0.930	0.816	1.115	0.896	0.664	6.796
5600	chr15	96672815	96673895	+	0	NA	Intergenic	Intergenic	26343	NM_175121	67760	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	4.081	1.593	0.710	0.835	2.101	1.611	3.192	4.060	1.992	2.393	3.124	0.892	3.629	3.779	2.468	2.561	2.156	3.412	0.276	0.651	0.763	0.330	0.755	0.418	2.034
4646	chr14	47970173	47975164	+	0	NA	Intergenic	IAPEz-int|LTR|ERVK	73804	NR_045959	73961	Mm.390702	NR_045959		4930447J18Rik	4930425M13Rik	RIKEN cDNA 4930447J18 gene	ncRNA	3.928	1.311	0.556	2.724	6.271	4.523	2.483	5.063	3.189	3.487	6.634	4.252	2.520	4.249	3.125	4.015	1.923	3.811	0.787	0.768	0.763	0.702	0.651	0.664	3.841
6308	chr17	6077471	6079709	+	0	NA	intron (NM_177311, intron 1 of 15)	intron (NM_177311, intron 1 of 15)	1149	NM_001111017	321007	Mm.5548	NM_177311	ENSMUSG00000015659	Serac1	4930511N22Rik|D17Ertd141e	serine active site containing 1	protein-coding	4.147	3.501	1.660	5.097	3.771	1.931	6.340	3.137	3.850	5.189	2.053	2.192	3.460	8.261	5.081	7.296	5.204	4.482	nan	2.203	1.248	3.052	2.078	1.900	6.323
2432	chr11	72763665	72769409	+	0	NA	intron (NM_009671, intron 24 of 24)	intron (NM_009671, intron 24 of 24)	29302	NM_001024926	192986	Mm.194755	NM_001024926	ENSMUSG00000057778	Cyb5d2	9330151E16Rik|Gm2	cytochrome b5 domain containing 2	protein-coding	5.541	6.043	2.102	8.332	1.959	0.894	5.177	5.034	5.086	5.277	2.926	1.694	6.302	5.581	8.310	10.099	5.016	8.197	2.576	1.624	1.623	4.073	nan	1.008	9.973
7947	chr2	6000573	6004877	+	0	NA	intron (NM_001081132, intron 8 of 21)	intron (NM_001081132, intron 8 of 21)	51256	NM_001081132	326622	Mm.31102	NM_001081132	ENSMUSG00000043241	Upf2	-	UPF2 regulator of nonsense transcripts homolog (yeast)	protein-coding	4.152	0.639	0.453	3.145	2.996	1.997	5.344	5.366	4.120	3.723	4.657	3.412	5.188	5.743	5.101	6.464	3.838	6.610	0.802	0.494	0.710	0.652	0.322	0.203	5.528
14858	chr9	13629573	13631797	+	0	NA	intron (NM_001013813, intron 1 of 3)	CT-rich|Low_complexity|Low_complexity	10696	NM_001013813	270118	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like 2 (Drosophila)	protein-coding	6.509	14.404	3.951	8.502	2.783	1.150	5.221	6.941	4.870	7.852	5.318	2.830	5.067	6.951	8.489	9.334	4.252	8.102	6.131	3.783	2.359	6.270	4.534	3.295	12.020
5289	chr15	72639042	72641781	+	0	NA	intron (NM_029640, intron 20 of 21)	L3|LINE|CR1	-94132	NM_001033876	223604	Mm.386856	NM_001033876	ENSMUSG00000036760	Kcnk9	Task3	potassium channel, subfamily K, member 9	protein-coding	6.017	6.634	1.816	9.265	1.822	0.666	6.249	6.949	4.066	4.306	2.510	2.196	5.025	5.591	8.601	8.298	5.201	6.854	3.512	1.398	0.989	4.332	1.656	1.373	9.976
2581	chr11	86614151	86615588	+	0	NA	intron (NM_029478, intron 7 of 11)	B1_Mur2|SINE|Alu	-30711	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	2.728	0.595	0.599	1.576	0.504	0.463	1.471	3.014	1.506	1.997	0.803	0.414	2.158	4.356	2.098	1.533	1.410	1.908	0.902	0.705	0.171	nan	0.279	0.399	nan
6166	chr16	84824545	84825984	+	0	NA	3' UTR (NM_023844, exon 10 of 10)	3' UTR (NM_023844, exon 10 of 10)	9734	NM_001302216	11957	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	5.260	1.636	0.394	3.906	1.889	0.513	3.638	5.869	3.607	2.355	1.889	3.070	5.755	3.636	3.891	5.827	3.470	4.636	1.063	0.758	0.495	nan	0.699	0.353	4.803
7355	chr18	68258032	68260788	+	0	NA	TTS (NM_153794)	TTS (NM_153794)	1563	NR_106078	102465702		NR_106078	ENSMUSG00000098253	Mir7219	Gm27613|mmu-mir-7219	microRNA 7219	ncRNA	4.748	0.801	0.264	2.869	1.691	0.856	2.210	3.860	1.920	2.304	1.132	0.804	2.371	1.654	1.527	2.260	2.457	2.569	3.902	3.618	1.100	2.863	3.132	1.975	1.988
4760	chr14	65021702	65024544	+	0	NA	intron (NM_153414, intron 10 of 16)	ID_B1|SINE|B4	73078	NM_001253731	210925	Mm.71332	NM_153414	ENSMUSG00000021975	Ints9	BC028953|D14Ertd231e	integrator complex subunit 9	protein-coding	0.395	0.739	0.787	0.478	0.366	0.095	0.198	0.427	0.507	0.467	0.236	0.370	0.158	0.188	0.273	0.633	0.282	0.627	3.861	nan	1.321	4.688	1.432	1.558	0.771
42	chr1	20624358	20625771	+	0	NA	Intergenic	L1_Mur3|LINE|L1	-7007	NM_153179	241035	Mm.249253	NM_153179	ENSMUSG00000043760	Pkhd1	AI118496|AI182499|FPC|Tigm1	polycystic kidney and hepatic disease 1	protein-coding	nan	0.678	0.263	0.476	2.456	0.656	1.771	1.525	0.694	0.963	0.296	0.332	3.143	3.734	2.298	1.986	1.472	2.063	0.416	0.341	0.087	0.155	0.367	0.100	0.360
15490	chr9	107625250	107629105	+	0	NA	intron (NM_008138, intron 1 of 8)	intron (NM_008138, intron 1 of 8)	8165	NM_008138	14678	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	4.328	1.658	0.873	4.269	4.045	2.813	3.212	2.316	nan	nan	3.439	1.757	1.557	2.030	2.439	nan	1.865	2.623	4.403	4.188	4.659	9.359	3.543	3.683	3.983
10335	chr4	104874275	104875509	+	0	NA	intron (NM_001316667, intron 1 of 11)	intron (NM_001316667, intron 1 of 11)	1506	NM_001290645	230558	Mm.197638	NM_146148	ENSMUSG00000035031	C8a	-	complement component 8, alpha polypeptide	protein-coding	1.566	1.166	0.609	1.953	1.719	0.599	1.066	2.800	1.628	1.398	1.086	0.688	1.444	3.259	1.966	2.403	1.953	1.606	0.866	1.531	0.722	1.120	0.664	0.626	2.750
759	chr1	155746073	155749806	+	0	NA	Intergenic	Intergenic	-5912	NM_010712	16872	Mm.103624	NM_010712	ENSMUSG00000026468	Lhx4	A330062J17Rik|Gsh-4|Gsh4	LIM homeobox protein 4	protein-coding	9.841	8.326	2.523	12.114	5.318	4.099	5.545	8.596	6.324	10.334	7.111	4.207	8.710	10.685	5.932	5.986	4.967	7.774	nan	3.271	3.270	6.124	nan	4.436	5.048
15027	chr9	44847239	44851895	+	0	NA	exon (NM_001081049, exon 3 of 36)	exon (NM_001081049, exon 3 of 36)	31707	NM_001081049	214162	Mm.2389	NM_001081049	ENSMUSG00000002028	Kmt2a	6430520K01|ALL-1|All1|Cxxc7|HRX|HTRX1|Mll|Mll1|mKIAA4050	lysine (K)-specific methyltransferase 2A	protein-coding	3.544	1.121	0.698	4.125	2.502	1.692	6.368	8.796	3.803	3.744	6.055	3.029	4.859	8.659	nan	nan	3.890	4.167	0.479	0.481	0.316	nan	0.341	0.266	8.208
13424	chr7	96395783	96399036	+	0	NA	intron (NM_001310760, intron 2 of 32)	MTC|LTR|ERVL-MaLR	-55445	NR_046043	670727	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	OTTMUSG00000021245	predicted gene 15412	ncRNA	5.989	2.333	1.174	3.662	2.930	1.172	5.281	7.282	4.683	5.092	2.982	2.690	8.381	5.152	6.505	5.614	5.863	6.204	nan	1.547	0.651	1.390	0.838	0.465	3.605
5710	chr15	101841967	101849683	+	0	NA	3' UTR (NM_008473, exon 9 of 9)	3' UTR (NM_008473, exon 9 of 9)	4961	NM_008473	16678	Mm.183137	NM_008473	ENSMUSG00000046834	Krt1	Krt-2.1|Krt2-1|Krt86	keratin 1	protein-coding	8.874	1.486	0.833	4.511	6.799	4.682	12.513	14.465	4.549	5.875	4.575	3.536	11.180	11.029	8.366	nan	9.210	6.911	5.646	3.490	3.775	6.123	4.732	4.955	8.651
10212	chr4	82071605	82074217	+	0	NA	intron (NR_040659, intron 1 of 2)	intron (NR_040659, intron 1 of 2)	7531	NR_040659	545641	Mm.216028	NR_040659	ENSMUSG00000085022	Gm5860	EG545641	predicted gene 5860	ncRNA	3.743	1.014	0.588	4.796	3.328	0.993	1.598	2.912	2.707	1.902	3.006	1.787	1.997	2.484	1.957	2.238	0.879	3.738	nan	3.302	1.315	5.776	1.711	1.106	2.328
4898	chr14	79914767	79917715	+	0	NA	Intergenic	Intergenic	-47065	NR_033535	100038734	Mm.387484	NR_033535		Gm10845	ENSMUSG00000075496	predicted gene 10845	ncRNA	7.490	14.709	8.115	6.097	4.715	2.542	5.002	9.510	6.801	5.781	7.093	3.863	6.136	7.384	8.684	8.681	4.495	7.554	4.003	1.953	0.902	1.681	3.693	2.362	5.855
15882	chrX	166410293	166412658	+	0	NA	intron (NM_177429, intron 12 of 22)	intron (NM_177429, intron 12 of 22)	29229	NM_177429	237222	Mm.247480	NM_177429	ENSMUSG00000040586	Ofd1	Cxorf5|DXGgc7e|ORF2	oral-facial-digital syndrome 1 gene homolog (human)	protein-coding	2.670	11.923	10.580	1.914	2.442	1.188	1.459	3.530	1.767	11.027	4.384	5.105	2.668	1.930	1.941	5.079	5.622	1.954	2.481	4.943	3.091	3.616	2.146	1.086	1.760
13857	chr7	145584581	145593747	+	0	NA	Intergenic	Intergenic	274329	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	nan	nan	0.254	nan	0.128	0.041	0.779	0.736	nan	0.584	0.193	0.133	0.560	0.315	0.603	0.631	0.483	0.449	4.958	1.885	1.255	5.805	nan	2.643	nan
235	chr1	62750571	62754114	+	0	NA	intron (NM_001077405, intron 7 of 15)	intron (NM_001077405, intron 7 of 15)	42390	NR_040601	74992	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	7.288	2.942	0.971	5.984	3.341	1.984	2.789	1.813	3.493	4.658	5.140	3.906	2.342	5.552	4.684	4.964	1.732	5.554	1.519	1.231	1.489	2.056	3.203	2.797	10.126
2291	chr11	61341726	61353351	+	0	NA	intron (NM_026183, intron 16 of 16)	intron (NM_026183, intron 16 of 16)	-4678	NM_001033542	380701	Mm.340166	NM_001033542	ENSMUSG00000069855	Slc47a2	4933429E10Rik	solute carrier family 47, member 2	protein-coding	4.107	1.072	0.594	4.664	3.648	2.001	3.696	2.562	3.457	3.671	1.722	1.612	4.807	nan	4.430	6.526	3.516	5.431	nan	1.382	0.902	2.205	1.148	0.865	4.756
6106	chr16	45961928	45969413	+	0	NA	intron (NM_001134480, intron 3 of 3)	L1M5|LINE|L1	44743	NM_001134480	433022	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	5.123	0.603	0.582	2.378	2.649	1.256	3.978	6.167	3.356	3.419	1.031	1.533	5.385	5.371	4.002	5.603	3.096	5.635	3.411	2.082	1.245	3.089	2.589	1.843	3.761
1931	chr11	5395363	5407399	+	0	NA	intron (NM_001080924, intron 1 of 8)	B2_Mm1a|SINE|B2	-19641	NM_001290501	407821	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	nan	5.602	3.302	4.717	4.571	3.500	2.944	6.484	3.402	3.758	3.189	2.561	3.519	4.937	3.635	3.897	3.812	4.010	5.169	nan	3.760	5.192	4.186	3.473	4.792
2591	chr11	86939475	86941417	+	0	NA	3' UTR (NM_001005341, exon 5 of 5)	3' UTR (NM_001005341, exon 5 of 5)	53316	NM_001005341	77864	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee-like 2 (Drosophila)	protein-coding	5.366	6.219	2.536	6.107	2.918	1.466	4.068	4.699	3.777	6.151	3.378	2.948	3.953	5.384	5.941	7.074	4.776	5.675	6.065	3.825	3.026	nan	4.717	4.510	6.750
7733	chr19	34952139	34954249	+	0	NA	intron (NM_183046, intron 21 of 31)	PB1D7|SINE|Alu	30836	NM_183046	240641	Mm.278471	NM_183046	ENSMUSG00000024795	Kif20b	33cex|B130024C23|C330014J10Rik|Mphosph1|magoo	kinesin family member 20B	protein-coding	5.726	9.028	2.908	6.354	1.428	1.222	6.142	nan	3.639	8.729	5.182	2.496	4.140	4.884	6.982	9.733	7.041	7.690	2.826	2.114	2.853	4.434	3.172	3.376	14.415
11974	chr5	149443679	149446772	+	0	NA	intron (NM_001310765, intron 1 of 5)	intron (NM_001310765, intron 1 of 5)	5565	NM_001310765	75860	Mm.159605	NM_029464	ENSMUSG00000029660	Tex26	4930588N13Rik	testis expressed 26	protein-coding	6.429	1.892	0.881	5.210	4.304	2.919	7.123	6.204	4.198	5.538	4.568	1.842	6.198	7.829	7.783	8.080	4.347	7.096	2.396	1.249	1.264	2.045	2.321	1.853	7.475
9817	chr3	133414931	133419354	+	0	NA	Intergenic	Lx6|LINE|L1	107032	NM_146141	74776	Mm.210305	NM_146141	ENSMUSG00000028013	Ppa2	1110013G13Rik|Sid6306	pyrophosphatase (inorganic) 2	protein-coding	3.173	nan	0.605	2.697	1.422	1.232	4.401	2.194	2.233	1.986	3.203	0.906	4.590	6.118	4.734	5.155	3.586	3.325	0.522	0.661	0.457	0.799	0.378	0.215	3.966
8339	chr2	71204868	71206495	+	0	NA	Intergenic	Intergenic	-6025	NM_001198875	13427	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	6.619	10.512	3.491	6.867	2.185	0.930	2.545	5.358	3.257	6.658	3.164	2.502	5.039	5.287	5.562	7.132	5.394	6.935	4.327	3.036	2.597	5.158	4.980	3.866	10.265
13719	chr7	130248607	130249997	+	0	NA	intron (NM_010207, intron 2 of 17)	intron (NM_010207, intron 2 of 17)	17506	NM_010207	14183	Mm.16340	NM_010207	ENSMUSG00000030849	Fgfr2	AU043015|AW556123|Bek|Fgfr-2|Fgfr-7|Fgfr7|KGFR|KGFRTr|svs	fibroblast growth factor receptor 2	protein-coding	2.897	0.924	0.652	1.818	2.434	1.620	3.227	4.058	2.407	2.542	1.755	1.263	2.982	3.470	2.055	2.553	2.610	1.843	1.630	2.469	1.503	2.451	2.144	1.559	2.439
9190	chr3	27587336	27594290	+	0	NA	intron (NM_173182, intron 3 of 25)	intron (NM_173182, intron 3 of 25)	-5818	NR_037275	100526525		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	4.754	1.257	0.642	nan	3.441	1.555	5.120	4.133	nan	3.818	2.754	3.192	3.831	4.981	nan	4.502	3.650	4.924	3.942	2.262	1.302	4.361	2.613	2.280	5.025
1103	chr10	12818752	12820988	+	0	NA	intron (NM_011682, intron 1 of 73)	intron (NM_011682, intron 1 of 73)	41865	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	5.842	0.498	0.174	2.075	1.640	0.741	5.448	3.831	2.561	2.517	1.319	1.473	5.545	4.859	5.803	6.186	7.490	5.027	0.848	0.915	0.438	1.025	0.599	0.302	5.118
10128	chr4	59343163	59351437	+	0	NA	intron (NM_001163288, intron 12 of 16)	L1Md_T|LINE|L1	87249	NR_105031	101055769	Mm.421401	NR_105031		Gm12596	OTTMUSG00000007649	predicted gene 12596	ncRNA	5.196	10.464	4.010	4.714	3.210	1.680	3.841	4.821	4.735	4.173	1.942	2.661	4.577	4.485	5.354	5.607	2.783	5.222	nan	2.710	1.849	8.896	2.132	1.682	5.498
6357	chr17	15663398	15664841	+	0	NA	Intergenic	RMER19B2|LTR|ERVK	32331	NR_045431	71008	Mm.399492	NR_045431		4933401D09Rik	-	RIKEN cDNA 4933401D09 gene	ncRNA	5.711	8.087	2.224	6.465	1.978	1.090	5.523	4.147	4.546	7.324	4.888	3.317	5.039	4.864	7.252	8.351	4.671	6.347	4.417	0.894	1.508	4.737	1.916	2.582	10.075
4268	chr13	83662897	83672118	+	0	NA	TTS (NM_025282)	TTS (NM_025282)	-60599	NR_015561	320203	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik	RIKEN cDNA C130071C03 gene	ncRNA	2.916	9.134	4.587	2.775	1.283	0.698	0.944	0.794	2.039	1.840	0.746	0.717	0.950	1.536	1.487	1.721	1.481	2.546	0.943	1.024	0.668	1.254	0.418	0.314	1.038
265	chr1	66891692	66894096	+	0	NA	Intergenic	Lx5c|LINE|L1	-29585	NM_007381	11363	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	5.987	1.033	0.554	2.453	2.332	0.836	6.464	2.332	3.284	2.684	2.195	1.631	5.765	5.438	4.599	7.373	3.563	5.038	0.914	0.661	0.308	0.867	1.062	0.276	5.188
296	chr1	74040193	74066692	+	0	NA	intron (NM_027884, intron 3 of 34)	intron (NM_027884, intron 3 of 34)	71005	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	6.604	1.803	0.680	9.194	7.266	3.988	4.680	5.354	5.510	8.039	1.817	1.296	6.684	9.871	5.735	11.319	6.068	nan	nan	nan	1.078	1.852	nan	0.709	nan
8852	chr2	155101707	155107574	+	0	NA	Intergenic	B1_Mur4|SINE|Alu	-4561	NR_040634	100504268	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	nan	2.641	0.790	5.004	1.884	1.104	3.199	5.397	nan	nan	2.876	0.924	5.547	6.598	5.038	7.099	4.697	4.682	nan	1.399	1.534	4.287	1.667	1.734	9.457
171	chr1	52691493	52693567	+	0	NA	intron (NM_178081, intron 2 of 5)	intron (NM_178081, intron 2 of 5)	34788	NM_178081	98682	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	5.560	1.990	0.438	2.344	3.329	3.093	3.467	3.109	3.024	2.804	4.206	1.806	3.124	4.055	4.259	6.247	2.093	5.221	nan	0.743	0.538	0.681	0.978	0.753	4.024
14330	chr8	74150853	74154301	+	0	NA	Intergenic	MTEb|LTR|ERVL-MaLR	-720597	NM_027837	71597	Mm.158735	NM_027837	ENSMUSG00000031621	Isx	9130012O13Rik|Pix-1	intestine specific homeobox	protein-coding	6.666	nan	1.611	6.438	2.300	0.947	nan	7.796	nan	5.056	3.769	1.947	4.898	6.225	6.175	7.576	3.807	5.249	1.755	1.785	1.972	nan	1.707	2.084	9.305
11216	chr5	45154587	45155983	+	0	NA	intron (NR_131933, intron 4 of 5)	intron (NR_131933, intron 4 of 5)	189084	NR_073013	75783	Mm.218472	NR_073013	ENSMUSG00000062496	4930431F12Rik	-	RIKEN cDNA 4930431F12 gene	ncRNA	2.725	0.558	0.185	3.554	1.573	1.244	0.801	0.706	1.650	1.909	0.784	0.070	0.640	1.022	0.738	1.958	nan	2.385	0.540	1.127	0.614	0.595	0.063	0.340	0.822
10398	chr4	115822098	115823471	+	0	NA	Intergenic	Intergenic	-5308	NM_175308	100465	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	10.078	10.605	3.736	11.855	7.050	4.406	8.782	8.213	7.631	14.039	7.824	4.404	8.988	10.742	9.972	11.183	6.060	10.884	6.356	4.282	5.733	9.524	5.075	6.145	16.118
7696	chr19	30009290	30024191	+	0	NA	Intergenic	B3A|SINE|B2	12950	NM_025741	66745	Mm.158128	NM_025741	ENSMUSG00000024815	Trpd52l3	4931412G03Rik	tumor protein D52-like 3	protein-coding	nan	1.682	0.873	nan	3.154	2.376	5.286	nan	6.311	5.742	nan	3.800	5.031	5.529	4.786	6.343	7.926	6.422	nan	0.641	0.378	0.579	nan	0.512	4.610
12566	chr6	108462130	108468804	+	0	NA	intron (NM_010585, intron 44 of 61)	MTD|LTR|ERVL-MaLR	-24276	NR_106121	102465766		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	3.037	1.327	0.677	1.490	1.291	0.439	6.531	5.469	2.281	2.528	1.001	0.822	6.433	5.036	5.402	7.422	5.708	3.897	nan	0.727	0.652	1.189	0.926	0.584	nan
11556	chr5	111131544	111135167	+	0	NA	intron (NM_001267622, intron 5 of 22)	intron (NM_001267622, intron 5 of 22)	129211	NR_030482	735278		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	3.228	1.706	0.942	2.487	2.764	1.806	5.088	3.555	3.216	3.048	2.358	2.528	5.604	5.507	4.478	4.138	3.421	3.926	nan	0.741	0.841	0.927	1.004	1.050	3.376
12257	chr6	54698842	54703390	+	0	NA	3' UTR (NM_001289741, exon 5 of 5)	3' UTR (NM_001289741, exon 5 of 5)	19492	NM_001289740	68235	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	1.630	2.856	1.067	1.419	0.393	0.271	0.765	1.081	0.981	0.965	7.385	2.995	0.742	0.589	1.246	1.426	nan	1.769	nan	1.801	1.696	3.381	3.403	2.253	1.014
5435	chr15	79712870	79714305	+	0	NA	intron (NM_013818, intron 6 of 11)	intron (NM_013818, intron 6 of 11)	22691	NM_013818	14904	Mm.19080	NM_013818	ENSMUSG00000042535	Gtpbp1	AL022987|AW045683|C85212|GP-1|Gtpbp	GTP binding protein 1	protein-coding	4.789	4.625	1.061	4.444	1.270	0.283	4.257	5.324	1.831	nan	nan	1.407	4.205	3.996	4.983	5.185	4.130	4.027	4.889	1.288	0.724	4.748	1.618	1.296	5.690
5449	chr15	80530585	80534293	+	0	NA	intron (NM_001163189, intron 2 of 5)	intron (NM_001163189, intron 2 of 5)	28031	NM_001163189	383075	Mm.297626	NM_001163189	ENSMUSG00000050439	Enthd1	Gm1242|Gm86	ENTH domain containing 1	protein-coding	nan	nan	0.503	nan	0.674	0.283	nan	6.427	1.162	nan	nan	1.928	1.467	nan	2.184	2.234	nan	1.700	1.584	1.232	0.923	4.056	1.010	1.025	1.300
4206	chr13	60829131	60830913	+	0	NA	Intergenic	L1Md_A|LINE|L1	-27178	NM_027344	70202	Mm.158337	NM_027344	ENSMUSG00000056728	Ctsll3	2310051M13Rik	cathepsin L-like 3	protein-coding	3.059	0.603		3.841	5.756	3.242	5.109	5.063	3.622	4.565	2.613	1.714	4.601	6.414	7.658	nan	1.753	6.181	0.797	0.713	0.685	1.055	1.045	0.876	4.883
6838	chr17	72020202	72023730	+	0	NA	intron (NM_007439, intron 5 of 28)	intron (NM_007439, intron 5 of 28)	240019	NM_030179	78785	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	2.738	0.829	0.436	4.593	3.273	3.597	2.994	1.684	nan	4.841	1.416	1.573	4.996	nan	4.024	6.299	5.380	4.948	2.135	1.502	1.623	2.735	1.621	1.705	7.835
10055	chr4	46614027	46615635	+	0	NA	intron (NM_198664, intron 8 of 12)	intron (NM_198664, intron 8 of 12)	-12902	NM_001164804	107684	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	5.317	nan	0.573	5.974	1.830	0.874	4.734	7.262	3.534	8.460	5.776	3.249	5.017	5.152	4.621	5.670	1.800	5.106	6.438	2.072	2.327	7.223	2.044	2.727	10.097
14871	chr9	14548157	14550756	+	0	NA	intron (NM_001081395, intron 11 of 12)	intron (NM_001081395, intron 11 of 12)	48837	NM_023153	66070	Mm.245938	NM_023153	ENSMUSG00000004096	Cwc15	0610040D20Rik|2900052N06Rik|Ed1|c11orf5|mED1	CWC15 spliceosome-associated protein	protein-coding	4.680	0.872	0.737	3.495	1.607	0.795	3.202	3.700	4.284	5.521	5.508	2.888	5.163	6.310	4.614	6.228	3.129	5.528	2.542	0.940	0.473	1.319	1.308	0.698	4.991
14196	chr8	46086463	46090431	+	0	NA	intron (NM_207213, intron 4 of 17)	intron (NM_207213, intron 4 of 17)	35699	NM_207213	102141	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	1.321	2.699	1.432	0.900	1.139	0.680	1.050	1.953	1.006	1.194	1.149	1.170	0.838	1.149	1.195	1.828	1.007	1.990	6.907	4.160	2.169	8.540	3.636	2.341	1.495
9294	chr3	51873089	51879726	+	0	NA	intron (NM_001004176, intron 1 of 4)	PB1D9|SINE|Alu	215228	NM_001310482	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	5.853	2.696	1.540	4.503	7.381	4.215	7.764	5.463	5.328	6.122	6.528	4.482	8.391	9.337	6.018	5.641	5.517	6.690	4.645	2.922	2.655	3.660	4.178	3.457	5.574
8921	chr2	160471212	160474237	+	0	NA	Intergenic	Intergenic	-105659	NM_010658	16658	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	nan	14.060	5.209	14.754	7.976	6.553	10.272	10.778	nan	nan	9.302	6.017	nan	10.273	10.420	12.732	11.784	nan	nan	3.957	3.380	5.525	5.690	6.534	16.448
2687	chr11	95633822	95635624	+	0	NA	Intergenic	Intergenic	-32234	NM_008831	18673	Mm.263862	NM_008831	ENSMUSG00000038845	Phb	Bap32	prohibitin	protein-coding	4.900	1.437	0.333	5.691	3.288	2.213	1.405	3.641	2.691	2.987	1.760	1.088	1.186	2.142	2.309	2.859	nan	4.091	1.105	nan	1.786	2.878	nan	nan	3.383
6382	chr17	24103336	24106344	+	0	NA	intron (NM_001080773, intron 4 of 13)	B1_Mus2|SINE|Alu	-31355	NM_027008	69259	Mm.28171	NM_027008	ENSMUSG00000016946	Kctd5	2610030N08Rik|mKIAA0176	potassium channel tetramerisation domain containing 5	protein-coding	6.324	1.515	0.992	1.870	1.749	1.165	3.147	5.465	1.822	2.213	1.828	1.638	2.745	4.696	2.379	nan	1.792	1.816	0.582	0.902	0.400	0.428	0.954	0.596	2.406
2012	chr11	20515592	20517160	+	0	NA	Intergenic	Intergenic	-26877	NM_021372	58172	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	5.286	3.431	1.682	4.802	2.746	1.662	4.875	4.151	5.023	4.830	2.965	2.998	5.171	5.225	6.723	6.415	6.214	7.201	3.020	0.884	0.846	1.792	2.528	1.560	4.179
6745	chr17	56341054	56360692	+	0	NA	intron (NM_172132, intron 1 of 22)	intron (NM_172132, intron 1 of 22)	24823	NM_172132	193796	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b|mKIAA0876	lysine (K)-specific demethylase 4B	protein-coding	6.210	nan	0.759	6.080	4.079	2.817	9.704	8.074	6.087	9.530	2.748	1.680	7.635	9.691	10.031	11.109	7.462	9.048	2.914	2.059	2.073	3.165	3.877	3.477	13.973
5111	chr15	36263011	36264967	+	0	NA	intron (NM_013923, intron 2 of 9)	L1Md_F2|LINE|L1	19158	NM_013923	30945	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	5.787	3.628	1.079	3.032	1.419	0.678	7.984	7.837	4.060	3.652	2.153	2.384	8.826	4.625	7.428	6.694	3.838	6.440	1.397	1.051	0.454	nan	0.818	0.729	5.026
8132	chr2	32242669	32249266	+	0	NA	intron (NM_145145, intron 10 of 19)	intron (NM_145145, intron 10 of 19)	9284	NM_145145	99011	Mm.31192	NM_145145	ENSMUSG00000039254	Pomt1	AI505244	protein-O-mannosyltransferase 1	protein-coding	7.474	0.877	0.157	6.456	5.962	4.344	7.591	12.183	4.436	5.917	2.879	1.490	7.176	10.070	6.216	10.157	8.701	5.932	0.780	1.203	0.821	0.972	0.797	0.733	12.957
582	chr1	130508666	130511206	+	0	NA	Intergenic	Lx8|LINE|L1	-47192	NM_010016	13136	Mm.101591	NM_010016	ENSMUSG00000026399	Cd55	Daf|Daf-GPI|Daf1|GPI-DAF	CD55 molecule, decay accelerating factor for complement	protein-coding	1.862	nan	4.672	3.767	1.929	1.346	1.077	0.862	1.896	1.457	1.193	0.420	1.161	1.284	1.376	1.013	0.844	nan	nan	3.425	1.995	2.266	1.747	0.900	0.939
1884	chr11	3230409	3233336	+	0	NA	intron (NM_001166548, intron 10 of 17)	intron (NM_001166548, intron 10 of 17)	28853	NM_001166549	74203	Mm.255649	NM_023743	ENSMUSG00000020454	Eif4enif1	2610509L04Rik|A930019J01Rik|AA410001|AU021239|Clast4|D11Ertd166e	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding	6.432	10.405	1.785	8.224	2.606	2.038	5.045	4.849	3.650	4.805	4.880	3.888	3.691	5.311	6.284	6.564	3.161	5.918	3.811	nan	1.173	4.411	2.726	1.976	8.940
10417	chr4	117541487	117545081	+	0	NA	Intergenic	Intergenic	-7040	NM_001285902	140546	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	0.793	0.520	0.432	1.044	0.503	0.201	1.105	1.018	0.419	0.685	0.245	0.444	0.539	1.069	0.828	nan	0.610	0.953	9.427	5.223	2.977	9.631	8.553	5.681	1.267
5296	chr15	73224524	73225777	+	0	NA	intron (NM_001130409, intron 27 of 29)	intron (NM_001130409, intron 27 of 29)	29732	NR_029561	387169		NR_029561	ENSMUSG00000065612	Mir151	Mirn151|mir-151|mmu-mir-151	microRNA 151	ncRNA	3.482	nan	0.248	1.879	1.671	1.141	3.698	4.368	2.312	1.549	nan	0.931	5.829	3.799	2.299	2.069	4.536	3.202	1.954	2.292	0.891	1.390	3.208	3.316	0.985
5555	chr15	88658996	88663728	+	0	NA	Intergenic	Intergenic	61060	NM_027306	70073	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	nan	2.136	0.766	nan	0.786	0.692	nan	4.236	nan	1.736	0.885	0.728	0.889	1.884	nan	nan	nan	nan	nan	1.199	0.642	5.205	1.795	0.966	nan
11221	chr5	52100239	52104572	+	0	NA	Intergenic	Intergenic	33612	NR_105845	102466648		NR_105845	ENSMUSG00000098726	Mir6417	Gm27334|mmu-mir-6417	microRNA 6417	ncRNA	2.451	0.403	0.416	2.609	2.027	0.840	1.278	3.557	3.879	6.282	0.606	0.900	2.180	3.692	2.778	3.874	3.607	3.442	0.937	0.540	0.257	0.603	0.487	0.197	2.041
11660	chr5	122068335	122069680	+	0	NA	Intergenic	B4A|SINE|B4	-19156	NM_001312908	13048	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2|ENSMUSG00000072641	cut-like homeobox 2	protein-coding	12.239	10.515	4.852	13.822	9.989	9.481	10.752	9.174	8.667	10.930	9.787	6.679	9.501	11.775	8.806	9.007	8.820	8.453	nan	nan	8.431	6.927	9.137	11.416	11.761
7639	chr19	22990080	22992230	+	0	NA	Intergenic	Intergenic	-150071	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	6.032	1.836	0.687	5.041	3.393	1.952	2.863	6.912	2.988	3.489	6.010	3.639	3.493	5.752	3.556	3.481	3.362	nan	1.391	1.994	1.537	2.941	2.431	1.584	4.429
4868	chr14	77057369	77059001	+	0	NA	intron (NM_175369, intron 1 of 5)	L1Md_F2|LINE|L1	21413	NM_001310649	108811	Mm.102168	NM_175369	ENSMUSG00000034795	Ccdc122	4933415L06Rik	coiled-coil domain containing 122	protein-coding	1.851	0.511	0.371	1.611	2.716	1.364	4.691	3.942	2.684	3.482	2.905	1.922	2.438	4.130	4.945	5.487	2.130	2.904	4.009	3.303	1.862	2.778	4.232	2.410	2.606
4167	chr13	56037920	56042599	+	0	NA	Intergenic	B4A|SINE|B4	95291	NM_012015	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	nan	0.482	0.541	0.677	0.973	0.482	0.457	0.933	0.553	0.624	6.721	0.853	0.322	nan	0.780	nan	0.613	nan	0.511	0.527	0.310	0.667	0.440	0.397	nan
7952	chr2	6254899	6259935	+	0	NA	intron (NR_040333, intron 3 of 6)	intron (NR_040333, intron 3 of 6)	-44423	NM_024208	67856	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	4.202	5.576	2.857	2.720	1.574	0.529	3.371	7.318	2.924	2.511	1.563	1.345	4.418	3.140	4.371	5.176	4.644	4.205	2.759	1.809	1.023	2.050	2.273	1.402	2.888
10722	chr4	135749576	135752632	+	0	NA	exon (NM_178257, exon 7 of 7)	exon (NM_178257, exon 7 of 7)	-8611	NM_001085509	242702	Mm.318639	NM_001085509	ENSMUSG00000037139	Myom3	8430427K15Rik|Gm434	myomesin family, member 3	protein-coding	2.881	1.103	0.511	6.127	3.648	1.532	2.497	2.354	nan	4.511	1.370	0.564	3.374	7.778	3.173	3.566	2.036	6.013	1.190	1.039	0.331	1.584	nan	0.684	4.397
557	chr1	129128029	129131742	+	0	NA	Intergenic	L1_Mus4|LINE|L1	-143419	NM_172485	210417	Mm.380518	NM_172485	ENSMUSG00000042581	Thsd7b	1700074E13Rik|B930082A18|D130067I03Rik	thrombospondin, type I, domain containing 7B	protein-coding	5.425	nan	1.367	1.180	2.558	1.388	4.498	5.365	2.585	2.617	3.920	4.431	2.757	2.926	2.340	3.696	2.760	2.477	nan	0.995	0.693	0.750	0.958	0.899	1.449
9956	chr4	19634029	19636747	+	0	NA	intron (NR_074089, intron 15 of 23)	intron (NR_074089, intron 15 of 23)	60322	NM_025476	66302	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	6.293	4.213	1.517	6.617	3.676	2.731	4.716	3.983	4.832	8.507	4.459	3.799	4.761	6.229	5.376	5.911	5.191	8.168	3.311	1.596	2.024	2.639	1.572	3.062	7.309
9874	chr3	149021093	149023454	+	0	NA	Intergenic	Intergenic	-67638	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	3.103	0.630	0.569	4.716	1.514	0.853	0.699	0.834	1.563	1.487	0.734	0.509	0.557	1.475	0.797	1.433	0.895	2.294	0.610	0.993	1.339	1.193	0.922	1.251	1.428
15523	chr9	110553842	110565265	+	0	NA	intron (NM_001081340, intron 5 of 20)	RLTR17B_Mm|LTR|ERVK	26956	NM_001081340	235626	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	6.524	9.154	4.030	5.892	3.768	2.546	5.654	7.304	nan	5.635	5.704	4.691	5.770	7.150	6.203	7.474	3.993	6.747	3.249	2.514	2.791	3.423	3.059	2.926	10.230
8612	chr2	122477338	122479134	+	0	NA	Intergenic	Intergenic	-6705	NM_001085518	381417	Mm.482295	NM_001085518	ENSMUSG00000079071	Gm14085	OTTMUSG00000015615	predicted gene 14085	protein-coding	5.641	15.842	4.376	3.072	1.622	0.687	3.079	3.289	2.795	2.360	7.257	3.502	nan	2.493	2.874	2.892	1.385	5.083	0.517	0.815	0.352	0.953	0.287	0.186	4.474
6372	chr17	22451137	22452317	+	0	NA	exon (NM_001331195, exon 6 of 8)	exon (NM_001331195, exon 6 of 8)	27525	NM_001331198	74149	Mm.30767	NM_198003	ENSMUSG00000071266	Zfp946	1300003B13Rik	zinc finger protein 946	protein-coding	5.593	3.481	2.138	5.371	3.800	2.458	4.729	4.053	3.388	4.673	3.556	4.738	3.215	5.543	4.647	5.122	4.401	5.639	3.382	2.948	2.195	2.322	3.597	2.776	6.283
11878	chr5	139880341	139887745	+	0	NA	Intergenic	B3|SINE|B2	-23900	NM_175522	243312	Mm.237102	NM_175522	ENSMUSG00000048988	Elfn1	A930017N06Rik|AI197272|Ppp1r28	leucine rich repeat and fibronectin type III, extracellular 1	protein-coding	4.387	2.307	0.850	3.937	1.361	1.050	1.749	1.356	2.022	2.615	2.754	0.955	1.123	2.367	2.270	2.620	1.298	2.713	1.333	2.311	2.068	5.236	nan	0.672	3.911
3325	chr12	53703468	53706396	+	0	NA	intron (NM_013780, intron 4 of 11)	intron (NM_013780, intron 4 of 11)	456255	NM_013780	27386	Mm.247044	NM_013780	ENSMUSG00000021010	Npas3	4930423H22Rik|bHLHe12	neuronal PAS domain protein 3	protein-coding	11.858	11.803	3.907	9.656	4.353	2.057	6.786	7.837	6.858	8.569	7.644	3.968	10.277	11.104	10.350	12.095	9.883	9.346	4.510	2.137	1.128	6.222	2.024	1.693	11.944
5653	chr15	99703436	99707049	+	0	NA	intron (NM_031842, intron 5 of 12)	intron (NM_031842, intron 5 of 12)	2955	NM_031842	83797	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	6.243	2.032	0.898	6.787	2.604	1.394	5.330	8.114	4.665	4.719	2.152	3.082	6.854	6.006	6.320	nan	6.318	5.994	3.226	2.445	1.802	3.661	3.128	2.894	6.003
12808	chr6	136775682	136777214	+	0	NA	intron (NM_145067, intron 1 of 25)	intron (NM_145067, intron 1 of 25)	5294	NM_145067	14917	Mm.222729	NM_145067	ENSMUSG00000042638	Gucy2c	AI893437|GC-C|Gcc	guanylate cyclase 2c	protein-coding	6.654	12.090	3.456	8.648	2.375	1.251	5.664	7.485	4.093	7.074	4.393	3.278	7.645	5.979	nan	11.408	5.863	8.383	4.803	1.707	1.467	7.367	1.754	2.142	10.550
10303	chr4	99602059	99604756	+	0	NA	Intergenic	Intergenic	-52892	NM_010425	15221	Mm.4758	NM_010425	ENSMUSG00000067261	Foxd3	CWH3|Genesis|Hfh2	forkhead box D3	protein-coding	7.479	5.653	1.669	8.703	3.120	1.930	6.523	9.960	6.420	10.641	4.789	2.901	8.925	8.901	9.437	12.056	5.377	9.602	4.782	3.638	3.746	6.243	1.615	1.302	14.446
8675	chr2	131670383	131674315	+	0	NA	Intergenic	Intergenic	-67525	NR_037281	100526526		NR_037281	ENSMUSG00000093157	Mir3098	mmu-mir-3098	microRNA 3098	ncRNA	7.694	0.969	0.719	2.352	2.296	1.450	5.669	4.401	3.681	4.317	0.548	0.808	5.229	6.749	5.766	8.703	7.705	4.324	nan	0.682	0.744	1.317	0.989	0.599	9.062
983	chr1	184490427	184495778	+	0	NA	Intergenic	Intergenic	64589	NR_040472	73590	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	7.649	0.499	0.389	2.192	1.048	0.505	3.597	5.048	2.071	2.193	0.877	1.857	5.702	4.806	4.710	6.567	5.117	4.172	3.407	1.344	0.893	1.510	2.299	1.749	6.226
9969	chr4	32472596	32474715	+	0	NA	intron (NM_001109661, intron 1 of 4)	intron (NM_001109661, intron 1 of 4)	56220	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	3.391	1.758	0.573	4.741	1.817	1.001	2.511	0.799	2.451	2.362	2.283	1.669	2.160	2.816	2.339	2.954	1.543	3.795	1.490	0.747	0.826	1.133	0.422	0.391	3.887
8152	chr2	33058717	33063437	+	0	NA	intron (NM_178888, intron 3 of 28)	ORR1D2|LTR|ERVL-MaLR	26127	NM_178888	99326	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	4.537	1.794	0.833	4.649	3.826	2.397	3.681	3.881	4.555	6.568	1.644	1.997	6.652	7.432	5.390	8.291	4.994	7.078	7.185	3.507	2.887	9.938	5.034	4.540	7.705
12231	chr6	51416243	51422148	+	0	NA	Intergenic	Intergenic	-13475	NM_010903	18025	Mm.42138	NM_010903	ENSMUSG00000029832	Nfe2l3	Nrf3	nuclear factor, erythroid derived 2, like 3	protein-coding	9.792	14.603	5.792	11.118	4.662	2.760	11.500	10.531	7.541	11.937	8.276	5.763	12.153	11.699	12.087	12.658	10.989	10.450	8.758	3.295	3.568	7.226	4.277	4.977	13.577
4482	chr14	17196904	17199575	+	0	NA	Intergenic	MuRRS4-int|LTR|ERV1	92681	NR_144493	100417973		NR_144493		Pou5f1-rs6	Gm18927|Oct4P3|Otf3-rs6|Otf3f	POU domain, class 5, transcription factor 1, related sequence 6	pseudo	10.101	17.952	5.273	12.395	4.955	3.769	9.599	12.842	6.063	14.314	8.708	4.351	8.251	10.379	11.869	12.822	6.027	10.377	5.145	2.735	4.667	6.979	3.843	4.999	19.593
3496	chr12	80844263	80853896	+	0	NA	intron (NM_178682, intron 2 of 5)	B3|SINE|B2	58547	NM_001242419	217684	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	4.202	3.308	1.167	3.631	1.612	0.721	2.328	2.119	2.691	2.854	2.281	1.622	2.622	nan	4.002	nan	3.180	3.290	1.212	1.219	0.673	1.229	0.767	0.536	5.182
9895	chr4	3582363	3584849	+	0	NA	intron (NM_054089, intron 2 of 12)	intron (NM_054089, intron 2 of 12)	8727	NM_054089	116940	Mm.171323	NM_054089	ENSMUSG00000028233	Tgs1	D4Ertd800e|Ncoa6ip|Pimt	trimethylguanosine synthase 1	protein-coding	0.741	6.845	5.479	0.800	1.206	0.401	0.269	nan	0.912	0.930	0.706	0.528	0.252	0.445	0.549	0.702	0.523	0.791	0.459	nan	0.628	0.177	0.384	0.442	0.335
5540	chr15	85856641	85858812	+	0	NA	3' UTR (NM_001033337, exon 14 of 14)	3' UTR (NM_001033337, exon 14 of 14)	-1981	NM_001168672	29870	Mm.20858	NM_013882	ENSMUSG00000022385	Gtse1	B99|Gtse-1	G two S phase expressed protein 1	protein-coding	nan	2.469	1.588	nan	1.318	1.677	nan	2.190	2.168	1.662	6.209	4.851	1.326	1.308	nan	nan	nan	nan	nan	0.851	0.903	1.647	1.412	0.973	1.790
12574	chr6	112159966	112161765	+	0	NA	Intergenic	IMPB_01|Satellite|Satellite	-49843	NR_027865	67336	Mm.378014	NR_027865	ENSMUSG00000100219	1700054K19Rik	-	RIKEN cDNA 1700054K19 gene	ncRNA	6.046	0.479	0.267	2.848	1.745	0.888	9.197	7.886	2.719	3.460	1.219	1.267	5.678	4.877	5.345	6.621	4.176	4.544	nan	2.828	2.429	3.647	3.273	2.791	5.505
7132	chr18	35765945	35769832	+	0	NA	Intergenic	Intergenic	-3671	NM_019912	56550	Mm.180052	NM_019912	ENSMUSG00000091896	Ube2d2a	1500034D03Rik|Ubc2e|Ube2d2|ubc4	ubiquitin-conjugating enzyme E2D 2A	protein-coding	5.192	0.951	0.970	2.977	5.396	4.750	2.564	2.715	2.610	2.323	1.764	1.184	3.592	2.676	2.283	3.469	4.814	3.796	1.291	1.211	1.386	0.759	1.224	1.395	2.959
7251	chr18	55112192	55114595	+	0	NA	Intergenic	ID_B1|SINE|B4	-123213	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	2.327	nan	0.541	3.357	2.648	0.900	2.288	nan	1.843	2.113	1.045	1.291	2.791	2.471	2.155	3.435	2.082	3.059	2.511	1.878	1.383	4.196	2.245	1.143	2.620
14172	chr8	37882700	37885218	+	0	NA	intron (NM_145841, intron 2 of 7)	intron (NM_145841, intron 2 of 7)	368243	NR_029884	723860		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA	6.866	0.872	0.302	3.909	2.472	0.643	3.290	6.306	4.136	3.978	2.404	0.594	10.799	8.239	5.827	7.260	5.428	5.080	0.536	0.471	0.163	0.631	0.356	0.062	4.642
9780	chr3	122685730	122689917	+	0	NA	Intergenic	(GGA)n|Simple_repeat|Simple_repeat	-41335	NM_153422	242202	Mm.134911	NM_153422	ENSMUSG00000053965	Pde5a	Cgbpde|Cn5n|PDE5a2|Pde5|Pde5a1	phosphodiesterase 5A, cGMP-specific	protein-coding	6.639	5.711	1.882	5.884	2.944	2.166	7.914	6.944	4.342	6.618	7.115	3.650	8.250	9.540	7.517	6.058	5.844	6.886	4.888	2.576	2.005	4.712	nan	3.442	8.782
11082	chr5	28117069	28118779	+	0	NA	Intergenic	Intergenic	46512	NM_153526	231070	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	8.384	13.863	4.132	13.550	2.567	2.261	6.937	6.868	6.623	16.285	7.222	3.856	7.961	10.282	9.374	11.014	4.546	10.427	5.726	1.522	2.495	8.518	3.733	4.980	15.280
10532	chr4	126457095	126460416	+	0	NA	intron (NM_001317174, intron 8 of 18)	(CCAA)n|Simple_repeat|Simple_repeat	9828	NM_001317174	236511	Mm.30800	NM_153403	ENSMUSG00000041530	Ago1	Eif2c1	argonaute RISC catalytic subunit 1	protein-coding	2.026	0.615	0.397	0.652	0.396	0.074	1.826	3.355	0.820	0.847	0.228	0.346	3.843	2.133	nan	4.226	1.779	2.080	1.166	0.707	0.503	0.991	0.397	0.239	0.932
8442	chr2	91277015	91284002	+	0	NA	intron (NM_001311144, intron 7 of 8)	B1_Mur4|SINE|Alu	15393	NM_023854	77038	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	5.283	0.497	0.536	3.327	1.680	0.819	4.474	4.922	4.945	3.931	1.206	1.071	7.705	5.604	4.865	8.067	9.068	7.106	1.146	0.719	0.787	0.836	0.795	0.735	5.679
2167	chr11	51568861	51576131	+	0	NA	exon (NM_153393, exon 21 of 29)	exon (NM_153393, exon 21 of 29)	-12261	NM_028398	72947	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	4.792	10.467	7.776	5.264	5.602	4.576	4.796	nan	3.894	5.699	2.196	2.054	5.960	7.588	5.790	nan	5.181	nan	nan	1.777	2.425	nan	nan	1.626	5.876
1980	chr11	11719762	11738724	+	0	NA	intron (NM_001301866, intron 3 of 5)	intron (NM_001301866, intron 3 of 5)	39066	NM_001301863	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	nan	1.164	0.632	1.951	1.211	0.638	5.571	2.573	1.389	1.385	0.791	0.623	3.630	3.508	4.353	6.473	5.310	3.056	1.990	nan	0.898	1.707	2.002	1.453	4.115
8216	chr2	38639403	38642851	+	0	NA	intron (NM_011187, intron 3 of 7)	B3A|SINE|B2	2779	NM_011187	19177	Mm.389251	NM_011187	ENSMUSG00000026750	Psmb7	AU020723|MC14	proteasome (prosome, macropain) subunit, beta type 7	protein-coding	6.425	0.540	0.670	1.795	6.197	4.362	2.588	2.662	1.996	2.520	1.541	1.417	3.417	3.938	2.166	2.589	6.430	3.836	0.966	0.854	0.889	0.521	0.441	0.673	3.545
4004	chr13	38726154	38727282	+	0	NA	Intergenic	Intergenic	-67690	NM_025380	66143	Mm.490319	NM_025380	ENSMUSG00000001707	Eef1e1	1110003A02Rik	eukaryotic translation elongation factor 1 epsilon 1	protein-coding	5.541	7.994	2.163	7.815	2.139	0.835	3.045	3.731	3.715	6.686	3.398	3.290	3.427	6.132	6.850	7.894	2.923	6.014	2.670	1.693	1.604	4.407	2.520	1.773	10.069
9482	chr3	89801908	89803999	+	0	NA	Intergenic	Intergenic	-28417	NM_172530	214547	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	10.029	10.738	3.833	8.653	6.988	4.445	12.493	9.616	6.585	7.907	6.581	4.290	11.158	11.684	11.502	12.338	8.293	10.019	5.330	2.729	1.453	6.955	3.776	2.298	12.811
8859	chr2	155643318	155646519	+	0	NA	intron (NM_019828, intron 10 of 18)	intron (NM_019828, intron 10 of 18)	22038	NR_030757	735275		NR_030757	ENSMUSG00000076312	Mir499	Mirn499|mir-499|mmu-mir-499	microRNA 499	ncRNA	5.084	6.888	1.908	4.817	2.382	1.611	5.058	9.824	nan	nan	4.310	1.898	nan	6.773	5.775	8.182	4.474	4.776	4.141	1.932	2.144	6.865	2.044	2.008	8.476
4890	chr14	79654858	79656556	+	0	NA	intron (NM_010701, intron 3 of 6)	intron (NM_010701, intron 3 of 6)	6476	NM_001310655	16840	Mm.46561	NM_010701	ENSMUSG00000022025	Cnmd	Bricd3|ChM-I|Chmd|Lect1	chondromodulin	protein-coding	3.873	1.087	1.296	1.561	3.095	2.669	3.799	3.964	3.295	3.478	1.613	0.374	2.083	4.813	3.146	2.404	2.196	3.286	0.479	0.829	1.177	0.231	0.489	1.252	2.263
15307	chr9	75111081	75113501	+	0	NA	intron (NM_010864, intron 1 of 40)	L1_Mus2|LINE|L1	41085	NM_010864	17918	Mm.3645	NM_010864	ENSMUSG00000034593	Myo5a	9630007J19Rik|AI413174|AI661011|Dbv|MVa|Myo5|MyoVA|Sev-1|d|d-120J|flail|flr	myosin VA	protein-coding	5.448	0.615	0.293	3.163	2.962	1.720	2.721	5.294	3.544	5.447	4.722	3.750	3.404	5.555	4.123	5.547	4.427	5.263	0.726	nan	0.355	0.540	0.745	0.553	5.656
9430	chr3	87709161	87716372	+	0	NA	intron (NM_001003912, intron 15 of 39)	RSINE1|SINE|B4	35857	NM_028971	74485	Mm.474494	NM_028971	ENSMUSG00000023084	Lrrc71	4933430H15Rik	leucine rich repeat containing 71	protein-coding	10.479	6.514	2.389	9.393	7.332	5.212	14.389	9.419	6.598	11.038	7.877	4.226	11.621	12.935	10.784	10.945	7.697	11.261	3.828	2.292	2.368	4.746	2.781	3.086	14.452
5024	chr15	7450101	7452529	+	0	NA	Intergenic	Intergenic	-52920	NM_001289498	268780	Mm.203208	NM_178748	ENSMUSG00000042961	Egflam	5930412K08|AU040377	EGF-like, fibronectin type III and laminin G domains	protein-coding	2.695	0.664	0.296	2.007	1.860	0.886	2.967	3.762	3.021	3.566	0.422	0.322	6.672	5.359	2.783	2.709	2.572	3.643	0.587	0.334	0.351	0.332	0.320	0.077	1.245
8538	chr2	117161026	117165153	+	0	NA	intron (NM_033524, intron 2 of 6)	intron (NM_033524, intron 2 of 6)	-22038	NR_030440	732489		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	1.202	8.524	5.364	0.871	0.418	0.121	1.231	0.707	1.342	0.954	0.488	0.348	nan	0.598	1.048	nan	0.772	1.077	0.574	0.702	0.564	0.329	0.264	0.183	nan
677	chr1	137305201	137311569	+	0	NA	Intergenic	Intergenic	-347937	NM_030676	26424	Mm.16794	NM_030676	ENSMUSG00000026398	Nr5a2	AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B	nuclear receptor subfamily 5, group A, member 2	protein-coding	5.940	0.983	0.852	3.133	4.819	3.078	5.555	4.081	2.941	3.013	1.315	1.602	4.766	5.552	5.037	6.264	5.131	4.983	0.891	1.060	0.702	0.911	0.618	0.755	nan
8809	chr2	152156841	152165307	+	0	NA	Intergenic	Intergenic	17465	NM_009328	21407	Mm.3881	NM_009328	ENSMUSG00000068079	Tcf15	Meso1|bHLH-EC2	transcription factor 15	protein-coding	7.419	3.966	1.599	5.084	3.396	2.194	6.366	8.408	3.847	5.188	2.618	1.452	7.096	7.708	6.453	8.901	7.759	6.377	nan	1.343	1.392	2.108	1.394	1.206	12.149
10228	chr4	82988281	82989635	+	0	NA	intron (NM_177863, intron 13 of 35)	intron (NM_177863, intron 13 of 35)	32144	NM_177863	329872	Mm.242337	NM_177863	ENSMUSG00000059049	Frem1	BC037594|D430009N09|D630008K06|crf11|eye<m02Jus>|eyes2|heb|qbrick	Fras1 related extracellular matrix protein 1	protein-coding	1.724	3.494	1.734	1.848	1.183	0.185	2.016	3.404	2.997	2.431	5.670	2.920	2.933	4.296	3.452	2.881	1.854	2.163	2.953	3.180	2.198	5.611	1.854	1.561	2.412
13008	chr7	25868936	25871220	+	0	NA	Intergenic	B3A|SINE|B2	-27580	NM_009999	13088	Mm.218749	NM_009999	ENSMUSG00000030483	Cyp2b10	Cyp2b|Cyp2b20|p16	cytochrome P450, family 2, subfamily b, polypeptide 10	protein-coding	4.402	1.175	0.606	3.615	3.816	1.426	4.632	7.077	3.216	2.652	1.423	0.711	3.481	4.957	4.410	5.369	4.940	4.717	1.349	0.948	0.966	1.200	0.923	0.677	6.127
12513	chr6	97264546	97271822	+	0	NA	Intergenic	Intergenic	-15404	NM_001081157	320502	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	2.944	1.437	0.743	1.803	2.265	1.254	7.503	7.705	2.120	1.820	2.138	1.930	4.043	4.811	nan	nan	3.326	3.402	nan	nan	0.974	1.619	1.919	1.460	3.195
14264	chr8	67001061	67003080	+	0	NA	Intergenic	Intergenic	141853	NM_001163564	234344	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 ribonucleoprotein	protein-coding	0.843	0.276	0.416	0.464	0.180		0.309	0.719	2.691	1.490	5.713	2.358	1.060	1.243	0.956	0.657	0.354	1.193	nan	0.627	0.228	1.454	0.143	0.188	nan
7622	chr19	20725289	20730635	+	0	NA	promoter-TSS (NM_011921)	promoter-TSS (NM_011921)	-406	NM_011921	26358	Mm.14609	NM_011921	ENSMUSG00000024747	Aldh1a7	AI987940|Ahd2-like|Aldh-pb|Aldh1a4|Aldhpb	aldehyde dehydrogenase family 1, subfamily A7	protein-coding	2.920	0.369	0.314	0.395	0.558	0.276	4.264	7.697	2.305	1.287	0.549	1.998	1.725	2.441	2.275	2.475	3.779	nan	0.808	0.505	0.274	0.981	1.918	1.616	1.351
1210	chr10	37055564	37059071	+	0	NA	Intergenic	MT2A|LTR|ERVL	81609	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	5.757	3.237	1.612	3.346	3.435	1.920	2.882	3.722	3.611	2.788	8.389	4.708	2.936	2.972	3.267	3.182	2.553	3.753	1.757	1.868	0.784	1.218	1.563	0.811	3.439
590	chr1	132655797	132675476	+	0	NA	intron (NM_182716, intron 1 of 29)	intron (NM_182716, intron 1 of 29)	-22778	NM_001160316	269116	Mm.326702	NM_182716	ENSMUSG00000026442	Nfasc	AA387016|D430023G06Rik|NF|mKIAA0756	neurofascin	protein-coding	12.738	nan	0.673	6.103	9.518	6.189	7.858	8.498	9.493	11.697	6.864	4.802	10.937	12.071	7.219	12.190	8.939	nan	nan	1.453	1.035	1.014	1.548	1.282	7.181
5062	chr15	12260633	12262433	+	0	NA	intron (NM_172958, intron 11 of 15)	L1MA9|LINE|L1	56439	NM_172958	268783	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	3.209	0.927	0.717	1.646	2.765	1.109	1.695	2.947	1.852	2.364	1.002	1.464	2.484	3.128	1.604	1.720	2.409	2.365	1.472	1.393	1.067	0.627	1.081	0.631	1.741
7793	chr19	44320183	44324210	+	0	NA	Intergenic	ETnERV2-int|LTR|ERVK	-11130	NM_183216	329065	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	8.573	5.349	2.245	4.903	7.704	4.958	9.409	12.110	6.360	7.759	5.807	4.068	7.880	12.598	7.537	10.090	9.375	8.036	3.897	2.607	1.396	6.701	5.040	4.412	12.551
13691	chr7	125856075	125859821	+	0	NA	intron (NM_001081022, intron 18 of 27)	intron (NM_001081022, intron 18 of 27)	150072	NM_001081022	233865	Mm.274389	NM_001081022	ENSMUSG00000032743	D430042O09Rik	Kiaa0556	RIKEN cDNA D430042O09 gene	protein-coding	3.711	2.027	1.007	3.976	2.652	1.567	3.233	4.644	3.800	5.093	1.125	1.369	6.856	6.355	5.164	6.327	5.357	5.122	3.400	1.247	1.043	4.149	1.910	1.413	4.753
4201	chr13	60795920	60798220	+	0	NA	Intergenic	Intergenic	5774	NM_027344	70202	Mm.158337	NM_027344	ENSMUSG00000056728	Ctsll3	2310051M13Rik	cathepsin L-like 3	protein-coding	3.700	0.514	0.425	2.979	3.697	3.037	5.599	5.062	4.676	5.036	7.423	3.386	4.211	4.942	4.250	4.670	2.290	5.609	1.642	1.667	1.751	1.209	2.595	2.240	2.886
14755	chr8	126014468	126016889	+	0	NA	intron (NM_008430, intron 1 of 2)	intron (NM_008430, intron 1 of 2)	20576	NM_008430	16525	Mm.10800	NM_008430	ENSMUSG00000033998	Kcnk1	AI788889|TWIK-1	potassium channel, subfamily K, member 1	protein-coding	5.765	nan	0.261	nan	3.475	1.977	nan	6.329	2.334	3.705	1.839	0.989	4.589	7.974	4.286	6.750	5.269	4.495	nan	0.967	0.898	nan	0.287	nan	8.247
5832	chr16	17167201	17169629	+	0	NA	intron (NM_009456, intron 2 of 3)	intron (NM_009456, intron 2 of 3)	-21186	NM_001306169	76872	Mm.101656	NM_029779	ENSMUSG00000022768	Ccdc116	4930432J16Rik	coiled-coil domain containing 116	protein-coding	4.777	0.917	0.814	1.370	3.335	3.228	5.753	7.025	3.160	nan	3.709	2.639	5.097	3.910	4.183	5.338	4.670	5.176	0.670	0.938	0.850	0.482	0.542	0.636	4.461
11614	chr5	116293982	116295454	+	0	NA	Intergenic	Intergenic	-5733	NM_177759	269693	Mm.10946	NM_177759	ENSMUSG00000043913	Ccdc60	AU018954|C130098D09	coiled-coil domain containing 60	protein-coding	4.787	7.172	2.665	3.662	1.953	1.216	3.293	3.057	2.023	3.637	2.036	1.048	3.144	4.979	3.540	5.084	2.772	3.859	3.841	nan	0.804	2.982	nan	2.160	5.781
8788	chr2	150263168	150265782	+	0	NA	intron (NM_001142410, intron 1 of 3)	intron (NM_001142410, intron 1 of 3)	6958	NM_001142410	100216455	Mm.484816	NM_001142410	ENSMUSG00000079008	Gm14124	EG640962|ENSMUSG00000074735|Gm10749|OTTMUSG00000015734	predicted gene 14124	protein-coding	3.622	0.361	0.600	0.539	1.722	0.816	3.175	0.519	0.982	0.916	1.357	0.562	3.793	2.952	2.622	3.638	2.103	2.532	nan	0.396	0.094	0.322	0.370	0.327	3.310
4363	chr13	103747286	103749827	+	0	NA	intron (NM_172592, intron 8 of 9)	intron (NM_172592, intron 8 of 9)	16026	NM_172592	218543	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	2.236	1.368	0.670	1.211	0.786	0.437	1.147	1.437	nan	nan	4.549	4.385	0.905	1.967	1.040	1.367	1.176	nan	1.733	0.735	0.254	nan	0.769	0.711	1.161
9746	chr3	121319881	121321733	+	0	NA	intron (NM_024178, intron 3 of 3)	RLTR9E|LTR|ERVK	28990	NM_024178	66789	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	5.671	0.698	0.329	4.258	11.688	6.949	4.050	4.732	5.594	5.093	6.838	2.427	4.324	6.402	3.771	3.886	3.283	7.657	3.372	1.739	0.705	3.210	nan	1.670	3.535
12027	chr6	5060154	5061286	+	0	NA	intron (NM_181595, intron 4 of 15)	intron (NM_181595, intron 4 of 15)	133226	NM_011134	18979	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	2.610	0.816	0.567	2.077	1.455	0.742	3.056	4.049	3.214	3.526	0.637	0.893	5.401	4.932	6.374	8.018	6.758	4.094	1.487	1.791	0.709	1.654	1.096	0.759	3.231
10072	chr4	48141834	48145712	+	0	NA	intron (NM_026343, intron 3 of 7)	B1_Mur4|SINE|Alu	18854	NM_026343	67727	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	4.310	nan	0.802	2.762	3.355	2.159	3.614	3.767	3.262	3.148	0.724	0.853	4.291	5.460	5.067	5.431	4.996	nan	1.102	0.870	1.191	nan	0.994	0.596	5.098
13364	chr7	87255518	87260753	+	0	NA	intron (NM_001285833, intron 2 of 19)	Lx3_Mus|LINE|L1	11486	NM_001285833	50490	Mm.31748	NM_015760	ENSMUSG00000030562	Nox4	AI648021	NADPH oxidase 4	protein-coding	4.544	3.697	1.019	5.436	3.320	2.092	5.190	7.609	nan	5.526	4.081	2.047	5.090	6.330	5.443	5.813	3.925	5.924	3.323	2.226	1.962	nan	2.565	2.878	7.633
79	chr1	34215703	34217606	+	0	NA	intron (NM_001276764, intron 54 of 102)	intron (NM_001276764, intron 54 of 102)	56324	NM_010081	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.471	0.440	0.277	0.639	0.223	0.075	0.208	0.337	0.357	0.312	5.673	1.814	0.538	0.246	0.367	nan	0.220	0.937	0.526	0.334	0.032	0.483	0.436	0.130	0.714
10316	chr4	101180728	101185227	+	0	NA	intron (NM_146145, intron 5 of 24)	intron (NM_146145, intron 5 of 24)	82305	NM_146145	16451	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.460	nan	0.630	0.594	0.395	0.155	0.268	0.240	nan	nan	0.438	0.183	0.161	0.322	nan	0.540	0.310	0.448	9.648	6.615	4.270	9.275	4.938	3.147	0.461
6342	chr17	13748290	13749642	+	0	NA	intron (NM_022311, intron 1 of 2)	intron (NM_022311, intron 1 of 2)	-11575	NM_010806	17356	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	3.631	0.428	0.475	2.937	3.515	2.232	5.595	4.663	3.134	2.646	2.813	2.288	3.631	5.960	4.175	5.352	3.393	3.806	0.811	1.173	1.593	1.277	1.056	0.573	3.966
3845	chr13	12657647	12659616	+	0	NA	Intergenic	MERVL-int|LTR|ERVL	-8236	NR_003568	664862	Mm.415635	NR_003568		Gpr137b-ps	2310041G17Rik|ENSMUSG00000075118	G protein-coupled receptor 137B, pseudogene	pseudo	3.901	11.633	3.538	4.953	1.539	0.455	1.596	2.833	2.534	4.471	1.225	1.933	2.624	4.562	4.131	4.761	1.754	4.591	3.257	1.668	1.672	4.238	2.409	2.534	6.746
3295	chr12	36882174	36885167	+	0	NA	Intergenic	Intergenic	67465	NR_039558	100628578		NR_039558	ENSMUSG00000092998	Mir5099	mmu-mir-5099|mu-mir-5099	microRNA 5099	ncRNA	11.721	11.867	3.910	9.088	2.387	0.852	9.259	8.266	5.403	8.376	7.619	4.031	10.477	10.021	12.556	13.254	9.110	9.681	nan	2.439	1.942	7.835	3.599	2.360	20.135
14248	chr8	63742545	63746570	+	0	NA	Intergenic	IAPEz-int|LTR|ERVK	207613	NM_001195687	244495	Mm.485331	NM_001195687	ENSMUSG00000094443	Sgol2b	EG244495|Gm4975|Sgo2B	shugoshin like 2b (S. pombe)	protein-coding	5.586	0.864	0.580	3.048	5.201	2.719	3.807	5.201	4.241	4.814	2.590	3.294	6.288	5.416	5.122	5.741	5.113	4.830	nan	1.866	1.669	1.523	1.814	0.972	5.515
352	chr1	81750328	81752295	+	0	NA	Intergenic	Intergenic	-380605	NR_105762	102466629		NR_105762	ENSMUSG00000098797	Mir6344	Gm27840|mmu-mir-6344	microRNA 6344	ncRNA	4.130	0.399	0.478	1.428	1.459	0.515	1.354	1.610	3.527	2.640	4.539	2.952	3.599	2.153	2.328	3.630	3.917	3.644	nan	nan	0.208	0.486	nan	0.263	nan
6606	chr17	36016234	36017593	+	0	NA	intron (NM_008207, intron 2 of 5)	intron (NM_008207, intron 2 of 5)	3647	NM_008207	15042	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	3.963	7.079	2.716	4.875	2.263	1.411	4.499	3.602	3.135	6.415	4.221	2.345	2.789	4.112	5.251	5.902	2.707	4.563	3.396	1.357	1.878	3.259	1.968	2.644	8.774
3865	chr13	20271972	20278540	+	0	NA	intron (NM_080288, intron 8 of 21)	intron (NM_080288, intron 8 of 21)	184749	NM_080288	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	5.788	8.302	4.290	3.668	1.076	0.728	3.921	4.387	3.372	3.267	2.372	1.183	4.261	nan	5.543	4.859	3.404	4.756	5.872	3.893	2.859	7.915	4.698	3.036	nan
9261	chr3	41404988	41406872	+	0	NA	Intergenic	L1_Mus3|LINE|L1	87269	NR_040385	78706	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	3.366	1.430	0.482	1.081	2.398	1.812	4.956	2.435	nan	2.155	1.981	1.030	4.775	4.942	3.141	2.487	3.511	2.045	nan	0.815	0.862	nan	2.501	1.820	4.936
13330	chr7	82743187	82744196	+	0	NA	non-coding (NR_046004, exon 4 of 4)	non-coding (NR_046004, exon 4 of 4)	11953	NR_046004	77800	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	2.202	1.359	1.037	1.668	2.823	4.159	2.322	2.514	1.190	1.849	1.305	0.790	1.913	3.054	1.468	1.480	2.437	2.101	0.842	1.894	1.641	0.651	1.015	1.511	1.835
12167	chr6	38301565	38307325	+	0	NA	TTS (NM_001347122)	TTS (NM_001347122)	-5186	NM_172467	209032	Mm.101389	NM_172467	ENSMUSG00000047749	Zc3hav1l	B130055L09Rik|E430016P22Rik	zinc finger CCCH-type, antiviral 1-like	protein-coding	9.811	11.941	4.632	9.440	6.480	4.049	7.900	9.037	6.098	8.390	4.828	3.524	8.486	11.482	9.010	11.124	10.121	11.066	nan	3.599	2.577	nan	nan	3.795	11.507
1034	chr1	193266791	193272392	+	0	NA	Intergenic	L3|LINE|CR1	3597	NM_008059	14373	Mm.439721	NM_008059	ENSMUSG00000009633	G0s2	AI255151|AV006465	G0/G1 switch gene 2	protein-coding	8.088	5.458	2.898	3.842	3.989	2.136	6.365	5.787	4.404	6.002	2.327	1.719	7.954	8.632	6.358	9.752	7.466	6.799	2.575	2.488	1.966	2.065	4.676	3.870	5.341
2803	chr11	101029216	101034009	+	0	NA	intron (NM_001243050, intron 9 of 20)	(CA)n|Simple_repeat|Simple_repeat	1272	NR_105893	102466767		NR_105893	ENSMUSG00000098415	Mir6928	Gm27728|mmu-mir-6928	microRNA 6928	ncRNA	5.430	4.357	1.224	7.152	2.158	1.357	5.805	6.591	3.391	5.455	5.906	3.263	5.988	6.924	6.957	9.147	nan	6.127	5.256	nan	2.145	6.784	nan	nan	9.880
8947	chr2	163461754	163471703	+	0	NA	Intergenic	Intergenic	-5817	NR_028122	69517	Mm.395343	NR_028122	ENSMUSG00000053353	2310001K24Rik	-	RIKEN cDNA 2310001K24 gene	ncRNA	9.136	11.336	6.996	9.263	3.338	2.303	5.409	6.719	5.889	7.093	3.650	2.797	5.787	6.383	5.473	7.052	6.268	7.516	nan	1.939	2.536	2.119	1.666	1.715	7.957
3679	chr12	103968405	103970173	+	0	NA	Intergenic	Intergenic	-12392	NM_009247	20704	Mm.312593	NM_009247	ENSMUSG00000072849	Serpina1e	Dom5|PI5|Spi1-5	serine (or cysteine) peptidase inhibitor, clade A, member 1E	protein-coding	2.692	1.535	0.558	2.196	1.664	0.862	2.036	4.208	nan	3.023	6.236	2.855	3.848	3.948	4.879	3.119	3.054	3.160	6.024	2.713	1.618	7.191	3.022	1.950	4.369
15171	chr9	62655761	62668228	+	0	NA	Intergenic	B3A|SINE|B2	-15861	NM_176922	319480	Mm.34883	NM_176922	ENSMUSG00000032243	Itga11	4732459H24Rik	integrin alpha 11	protein-coding	6.844	5.719	2.704	5.149	3.622	2.891	7.952	6.136	4.787	6.933	4.008	2.915	7.841	9.138	7.188	8.334	5.022	6.950	2.559	1.918	1.702	2.727	2.149	2.049	10.657
13500	chr7	107640196	107646145	+	0	NA	intron (NM_001163557, intron 2 of 25)	intron (NM_001163557, intron 2 of 25)	36326	NM_001163557	19024	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	11.636	17.666	6.006	15.617	5.596	2.786	8.565	11.340	7.490	9.825	6.691	5.158	9.219	10.741	12.022	11.750	8.034	11.122	8.494	4.942	3.756	7.997	7.175	5.829	15.074
6991	chr18	4919525	4932827	+	0	NA	Intergenic	URR1A|DNA|hAT-Charlie	113690	NR_045881	100038439	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	ENSMUSG00000073646	predicted gene 10556	ncRNA	7.985	1.738	0.757	6.271	5.840	3.382	8.750	7.730	5.584	6.993	4.220	3.242	10.134	9.320	7.855	8.846	6.921	8.348	3.431	2.618	1.895	3.470	3.463	2.846	10.962
3145	chr11	121642639	121643916	+	0	NA	intron (NM_178664, intron 5 of 12)	(AGGGGG)n|Simple_repeat|Simple_repeat	29874	NM_178664	210004	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	1.649	nan	0.318	2.195	1.707	0.919	nan	nan	2.839	4.076	0.854	0.705	0.857	3.188	0.931	1.622	0.942	2.897	0.687	nan	0.347	0.419	0.232	0.179	1.099
8103	chr2	30930100	30934600	+	0	NA	Intergenic	Intergenic	-20651	NM_133673	30934	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	3.558	8.039	8.971	2.230	2.584	2.457	1.355	1.229	nan	1.711	1.793	1.167	1.002	1.911	1.136	1.557	1.996	1.085	0.993	1.676	2.568	0.437	0.930	0.971	1.698
947	chr1	182458055	182461907	+	0	NA	intron (NM_173378, intron 17 of 17)	intron (NM_173378, intron 17 of 17)	50814	NM_173378	209456	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	0.549	8.494	4.325	0.536	0.169	0.147	0.317	0.253	0.528	0.484	0.265	0.175	0.168	nan	0.235	0.881	0.499	0.688	0.586	0.468	0.543	0.469	0.407	0.290	0.613
5071	chr15	25592122	25593753	+	0	NA	Intergenic	Intergenic	-29613	NM_019472	17909	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	5.484	0.413	0.734	0.877	0.721	0.250	7.548	9.389	2.345	1.736	0.725	2.448	7.736	3.722	3.981	4.916	6.734	3.389	2.617	1.134	0.419	1.282	2.334	1.942	1.667
11058	chr5	23011600	23013124	+	0	NA	intron (NM_001081231, intron 1 of 3)	L1_Mus2|LINE|L1	-265478	NR_027362	330052	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	1.471	0.657	0.520	nan	1.046	0.305	1.329	2.015	1.226	1.524	2.131	2.633	1.856	3.098	1.852	1.352	1.372	2.119	0.855	0.490	0.137	0.430	0.441	0.309	0.678
920	chr1	179655914	179660601	+	0	NA	Intergenic	MMERVK10C-int|LTR|ERVK	-9974	NM_178653	109232	Mm.136458	NM_178653	ENSMUSG00000038936	Sccpdh	AW214504|C330023F11Rik	saccharopine dehydrogenase (putative)	protein-coding	13.092	0.652	0.807	2.827	2.201	1.166	5.034	7.194	3.782	3.861	5.616	4.123	6.042	6.058	5.668	9.425	8.853	6.437	1.389	1.422	1.141	2.236	1.352	1.240	7.692
428	chr1	91361913	91364964	+	0	NA	Intergenic	Intergenic	-2992	NM_173395	227358	Mm.389157	NM_173395	ENSMUSG00000047443	Erfe	4832406C22|Fam132b|myonectin	erythroferrone	protein-coding	2.990	0.780	0.472	3.338	1.309	0.553	1.770	4.023	1.347	1.627	1.556	0.819	0.782	1.131	1.343	2.009	0.754	2.654	5.555	2.251	1.403	4.304	5.120	3.442	2.528
13213	chr7	54216764	54218709	+	0	NA	Intergenic	RLTR17|LTR|ERVK	-325847	NR_105746	102466619		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	2.136	2.389	0.998	2.326	0.983	0.652	1.920	4.527	1.650	2.017	2.805	2.072	3.143	2.602	2.548	2.246	1.551	3.963	1.244	1.004	0.856	1.360	0.781	0.842	5.044
2305	chr11	62020377	62021754	+	0	NA	intron (NM_001310526, intron 1 of 7)	intron (NM_001310526, intron 1 of 7)	-55959	NM_001029936	432572	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	3.618	0.634	0.456	3.192	2.731	1.507	1.281	1.426	3.348	4.856	1.744	0.679	3.473	4.515	3.089	5.115	1.869	4.572	2.775	0.896	0.297	1.212	1.471	1.082	4.049
3545	chr12	84206106	84207585	+	0	NA	intron (NM_001163501, intron 1 of 12)	L2|LINE|L2	12036	NM_001163501	238317	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	3.511	0.907	0.298	2.438	1.104	0.338	2.900	2.971	1.957	2.551	0.713	0.442	4.745	4.968	6.384	nan	2.864	3.748	0.581	0.348	0.011	0.462	0.171	0.066	nan
3758	chr12	113831041	113835518	+	0	NA	Intergenic	RMER6C|LTR|ERVK	289371	NM_174885	238406	Mm.188683	NM_174885	ENSMUSG00000043945	Adam6a	Adam6|tMDCIV	a disintegrin and metallopeptidase domain 6A	protein-coding	nan	4.848	1.492	4.815	2.038	1.702	5.742	5.853	4.641	4.735	6.240	3.288	5.259	5.962	5.206	11.054	5.002	5.303	0.854	0.987	0.821	1.672	0.430	0.478	13.811
7576	chr19	10678365	10681523	+	0	NA	Intergenic	Intergenic	-1873	NM_021453	58803	Mm.34037	NM_021453	ENSMUSG00000024738	Pga5	1110035E17Rik|Pepf	pepsinogen 5, group I	protein-coding	7.880	8.974	2.782	6.883	3.149	1.212	8.539	10.680	4.973	5.997	5.896	2.965	6.846	8.835	8.919	9.828	6.797	8.812	2.696	2.139	1.164	5.424	2.361	2.090	12.053
10823	chr4	141197297	141200205	+	0	NA	intron (NM_172518, intron 8 of 9)	(TGGG)n|Simple_repeat|Simple_repeat	-15205	NM_001081174	76166	Mm.271064	NM_001081174	ENSMUSG00000073733	Rsg1	6330545A04Rik|Gm723	REM2 and RAB-like small GTPase 1	protein-coding	4.845	1.923	0.563	4.496	1.467	0.877	1.260	1.625	nan	2.981	1.558	0.608	1.192	2.093	1.982	2.666	1.169	nan	2.947	2.909	1.465	6.416	nan	1.597	4.976
11639	chr5	118804048	118807071	+	0	NA	Intergenic	MTB_Mm|LTR|ERVL-MaLR	-146780	NR_040694	74627	Mm.410828	NR_040694	ENSMUSG00000107144	4930413E15Rik	-	RIKEN cDNA 4930413E15 gene	ncRNA	3.273	1.895	1.653	3.069	3.984	2.231	2.534	0.934	3.534	4.781	7.257	1.286	2.416	3.095	1.983	3.381	2.361	1.940	nan	nan	0.793	0.468	nan	0.704	3.479
13198	chr7	53013626	53015464	+	0	NA	Intergenic	Intergenic	877344	NR_105746	102466619		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	2.660	1.205	0.481	2.747	1.349	0.526	4.886	8.236	1.851	3.051	6.257	1.847	5.218	4.570	5.568	5.895	4.117	4.976	8.639	4.459	2.998	6.966	6.864	5.740	6.450
500	chr1	108661595	108662932	+	0	NA	Intergenic	Lx8b|LINE|L1	745004	NR_102307	319596	Mm.136054	NR_102306	ENSMUSG00000100457	D830032E09Rik	-	RIKEN cDNA D830032E09 gene	ncRNA	2.092	nan	0.254	0.974	0.972	0.776	2.829	1.780	0.867	0.935	3.538	0.675	3.155	3.815	3.303	5.516	1.362	3.203	0.806	0.326	0.169	0.480	0.385	0.295	1.319
8562	chr2	118570958	118573310	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-22448	NM_138313	171543	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	7.473	8.193	1.937	10.926	4.062	2.798	5.062	6.849	5.106	15.399	6.218	3.537	4.893	6.160	7.190	9.399	5.249	9.870	3.685	1.642	3.239	3.986	2.018	3.514	17.667
11624	chr5	117606241	117608283	+	0	NA	intron (NM_001312914, intron 4 of 19)	intron (NM_001312914, intron 4 of 19)	193260	NM_001312914	333050	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	3.431	7.850	6.974	3.254	6.113	4.749	5.123	3.249	4.436	3.270	3.333	3.738	3.583	4.480	4.480	4.078	3.337	4.413	2.556	nan	2.293	1.533	2.249	2.122	3.049
9843	chr3	141800918	141802610	+	0	NA	intron (NM_001293561, intron 12 of 16)	intron (NM_001293561, intron 12 of 16)	129824	NM_001277218	12167	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	2.099	nan	0.308	1.958	3.146	1.286	nan	0.599	1.236	2.020	0.197	0.681	3.063	5.223	2.124	1.850	1.147	2.260	0.563	0.941	0.471	1.039	0.554	0.279	2.835
9285	chr3	51718086	51722325	+	0	NA	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	59026	NM_001310482	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	5.393	0.591	0.488	3.613	1.940	1.019	5.534	4.248	2.614	3.540	1.107	0.877	5.932	6.181	4.965	5.513	4.320	4.809	4.581	2.673	1.674	5.063	4.800	2.433	7.466
11503	chr5	104163277	104169657	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-4236	NM_010080	666279	Mm.319832	NM_010080	ENSMUSG00000053268	Dspp	Dmp2|Dmp3|Dpp|Dsp	dentin sialophosphoprotein	protein-coding	4.482	1.188	0.727	4.041	4.801	2.985	6.291	4.460	4.735	4.270	6.103	2.975	4.406	6.870	4.952	5.418	4.563	5.785	nan	1.305	1.141	0.787	0.829	0.647	4.235
5336	chr15	75533757	75535671	+	0	NA	Intergenic	Intergenic	31934	NM_001135689	23934	Mm.22154	NM_011837	ENSMUSG00000022577	Ly6h	-	lymphocyte antigen 6 complex, locus H	protein-coding	3.166	nan	0.846	2.781	0.543	0.530	5.078	6.241	2.003	2.591	nan	0.842	3.871	4.526	5.000	4.980	nan	3.548	2.276	0.474	0.569	nan	1.118	1.112	4.058
12037	chr6	6259412	6260958	+	0	NA	intron (NR_136905, intron 1 of 3)	intron (NR_136905, intron 1 of 3)	11526	NR_136905	101056138	Mm.389085	NR_136904	ENSMUSG00000093482	Gm20619	-	predicted gene 20619	ncRNA	3.354	0.816	0.170	1.458	0.683	0.397	7.916	5.318	2.827	3.026	2.230	0.649	6.867	4.926	6.633	7.126	4.442	3.909	0.421	0.282	0.159	0.607	0.296	0.246	3.087
4386	chr13	109906042	109909834	+	0	NA	intron (NM_011056, intron 8 of 16)	intron (NM_011056, intron 8 of 16)	4129	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	nan	nan	0.414	0.300	0.176	0.098	0.212	0.317	nan	nan	0.178	0.181	0.255	0.191	0.163	0.375	0.242	nan	6.342	3.336	3.219	nan	4.207	3.197	0.377
1275	chr10	44795468	44802735	+	0	NA	Intergenic	Intergenic	-268113	NM_011156	19072	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	5.417	nan	0.622	2.914	1.446	0.735	2.729	1.935	3.206	2.977	2.320	0.654	3.380	3.392	3.645	4.519	3.429	6.429	nan	0.618	0.498	0.799	0.742	0.435	7.259
11151	chr5	34036883	34040332	+	0	NA	intron (NM_181857, intron 18 of 24)	L1VL2|LINE|L1	42623	NM_001001985	269642	Mm.274610	NM_001001985	ENSMUSG00000048142	Nat8l	1110038O08Rik|Shati	N-acetyltransferase 8-like	protein-coding	6.547	3.837	1.037	8.728	2.085	1.395	10.389	5.701	5.072	9.198	3.126	2.630	9.722	7.999	nan	13.233	6.254	nan	0.946	0.457	0.895	1.577	0.733	0.887	15.982
9562	chr3	96374645	96376602	+	0	NA	Intergenic	Intergenic	39210	NR_001579	21748		NR_001579	ENSMUSG00000064796	Terc	mTER|mTR	telomerase RNA component	ncRNA	5.798	4.111	2.127	7.468	4.478	3.966	3.207	4.417	4.195	4.363	2.004	2.151	3.981	4.928	4.243	4.193	2.938	5.318	1.296	2.177	2.810	2.026	1.082	1.297	5.762
2211	chr11	54343583	54344757	+	0	NA	intron (NM_001033597, intron 15 of 20)	MER5A1|DNA|hAT-Charlie	-26482	NM_029105	74847	Mm.486538	NM_029105	ENSMUSG00000020332	Meikin	4930404A10Rik	meiotic kinetochore factor	protein-coding	3.915	1.770	0.805	2.658	2.299	1.567	1.971	2.278	2.046	2.676	1.792	1.398	2.033	3.226	2.883	3.394	2.571	4.516	1.371	2.072	1.245	1.762	1.174	0.808	2.916
6326	chr17	10230276	10233797	+	0	NA	intron (NM_021881, intron 4 of 6)	intron (NM_021881, intron 4 of 6)	87325	NM_021881	19317	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	2.783	0.820	0.786	4.970	1.746	0.700	1.069	1.668	1.824	1.724	0.928	0.902	0.852	1.693	1.364	nan	nan	3.277	nan	0.803	0.279	0.720	0.741	0.314	1.772
13317	chr7	80737478	80743207	+	0	NA	intron (NM_016721, intron 18 of 37)	intron (NM_016721, intron 18 of 37)	-51465	NM_173863	70461	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	4.699	8.376	6.345	nan	4.367	2.886	3.316	5.541	3.737	4.339	4.035	2.540	3.707	5.009	4.520	nan	3.970	4.267	5.508	4.960	3.972	6.109	5.425	4.011	nan
12795	chr6	135271339	135277670	+	0	NA	Intergenic	Intergenic	-20168	NM_001080553	14840	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	4.070	0.560	0.165	2.500	2.878	1.300	11.584	8.284	4.057	5.087	4.370	3.167	9.485	9.137	8.986	11.208	8.921	5.497	nan	2.311	1.595	3.253	3.837	2.359	nan
4941	chr14	106129839	106133161	+	0	NA	intron (NR_073203, intron 1 of 1)	Lx9|LINE|L1	25302	NR_073203	212085	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding	7.942	1.252	0.450	6.841	4.138	1.769	9.540	9.411	8.027	10.378	4.516	2.852	10.761	13.068	11.234	12.133	7.019	10.091	4.151	2.810	1.812	4.994	3.802	2.610	10.666
14533	chr8	108066974	108071720	+	0	NA	Intergenic	Intergenic	-480865	NM_010817	17463	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	7.585	2.594	0.796	6.471	5.110	2.879	2.605	6.783	4.795	7.049	1.545	1.026	6.098	9.935	4.986	6.365	5.139	6.527	0.815	0.789	0.638	nan	0.795	0.251	8.382
12693	chr6	124752638	124760401	+	0	NA	promoter-TSS (NM_007881)	promoter-TSS (NM_007881)	-32	NM_007881	13498	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	6.859	nan	0.929	5.559	7.784	5.127	8.425	nan	4.286	6.237	4.719	3.404	6.954	8.543	7.302	7.537	5.613	5.447	4.527	3.743	3.614	4.557	4.819	4.323	7.777
10802	chr4	140254256	140259658	+	0	NA	Intergenic	Intergenic	-10146	NM_198610	230868	Mm.298731	NM_198610	ENSMUSG00000040972	Igsf21	BC055811|Gm141	immunoglobulin superfamily, member 21	protein-coding	nan	9.502	3.372	7.064	3.707	2.558	5.251	5.732	nan	8.565	5.818	3.100	4.727	8.853	6.549	7.673	3.933	5.658	5.002	2.164	2.204	5.308	nan	5.019	8.979
1362	chr10	66452294	66455132	+	0	NA	Intergenic	Intergenic	308417	NR_131070	77198	Mm.107617	NR_131070		4930407I19Rik	-	RIKEN cDNA 4930407I19 gene	ncRNA	7.364	0.634	0.656	2.072	5.184	4.128	6.910	5.966	3.684	4.436	1.908	2.206	6.343	5.857	4.577	6.072	6.202	nan	0.466	0.734	0.984	0.676	0.808	0.920	5.777
8982	chr2	165487350	165492772	+	0	NA	TTS (NM_001007581)	TTS (NM_001007581)	3253	NM_001007581	381406	Mm.330785	NM_001007581	ENSMUSG00000039725	Trp53rka	2810408M09Rik	transformation related protein 53 regulating kinase A	protein-coding	4.089	0.542	0.391	1.717	1.373	0.660	4.120	6.820	2.474	2.328	7.560	3.198	4.343	3.110	4.069	5.803	5.429	3.945	nan	0.840	0.411	1.756	1.221	0.665	8.348
8820	chr2	152625211	152657889	+	0	NA	Intergenic	B3|SINE|B2	14542	NM_009047	19700	Mm.8752	NM_009047	ENSMUSG00000000359	Rem1	E030011C07Rik|Ras|Rem	rad and gem related GTP binding protein 1	protein-coding	10.333	4.003	1.928	9.571	8.389	5.051	9.240	11.204	8.259	8.458	5.268	4.313	8.621	11.248	8.523	10.108	6.853	11.834	nan	3.080	2.212	4.689	3.067	2.145	9.803
4155	chr13	54679458	54680285	+	0	NA	non-coding (NR_027396, exon 11 of 11)	non-coding (NR_027396, exon 11 of 11)	7937	NM_001146025	105239	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	4.925	10.715	3.540	4.029	1.520	0.432	2.575	5.619	2.058	2.291	1.249	0.624	4.691	3.552	2.532	2.767	2.099	3.228	0.942	2.690	1.805	7.132	0.971	0.455	4.911
12970	chr7	19961226	19965179	+	0	NA	Intergenic	Intergenic	-2210	NM_027839	71601	Mm.98097	NM_027839	ENSMUSG00000070777	Ceacam20	9130012D09Rik	carcinoembryonic antigen-related cell adhesion molecule 20	protein-coding	3.293	0.379	0.539	2.444	3.484	3.275	7.693	4.756	2.988	3.367	1.443	1.047	6.345	7.085	5.315	4.918	4.839	3.821	1.739	1.202	1.160	1.914	1.552	1.175	5.800
10324	chr4	102255174	102266687	+	0	NA	intron (NM_019840, intron 1 of 14)	RLTR51A_Mm|LTR|ERVK?	5991	NM_019840	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	4.557	nan	1.236	2.654	1.246	0.524	1.148	2.341	3.086	nan	2.038	1.502	2.016	2.031	nan	2.481	2.072	4.603	1.006	1.959	0.877	nan	0.516	0.290	3.101
9247	chr3	38000961	38002339	+	0	NA	Intergenic	ORR1A2|LTR|ERVL-MaLR	102837	NR_040559	626410	Mm.389417	NR_040559	ENSMUSG00000106461	Gm20755	-	predicted gene, 20755	ncRNA	5.389	0.753	0.533	1.751	3.062	0.823	3.182	3.376	2.092	3.056	0.988	1.139	3.207	3.809	4.031	4.302	4.537	3.745	nan	0.687	0.356	nan	1.580	0.391	3.485
2484	chr11	76305712	76313126	+	0	NA	intron (NM_008750, intron 1 of 7)	intron (NM_008750, intron 1 of 7)	65683	NM_183263	67390	Mm.24886	NM_183263	ENSMUSG00000038046	Rnmtl1	4833420N02Rik|AI255153|HC90|Mrm3	RNA methyltransferase like 1	protein-coding	6.823	6.584	2.059	8.132	6.645	4.029	5.264	4.058	5.166	8.318	5.479	2.442	6.213	9.947	nan	nan	4.706	nan	3.929	2.898	nan	4.579	3.829	3.364	9.542
8159	chr2	33297290	33301290	+	0	NA	intron (NM_001290570, intron 3 of 16)	intron (NM_001290570, intron 3 of 16)	72204	NM_001290570	241308	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	2.884	0.771	0.963	2.528	5.454	4.746	3.258	4.633	3.096	3.945	0.898	1.324	2.953	6.304	3.312	2.948	3.526	3.167	3.505	2.567	3.415	3.524	4.979	6.105	2.681
13307	chr7	77659285	77660998	+	0	NA	Intergenic	Intergenic	917697	NM_008746	18213	Mm.33496	NM_008746	ENSMUSG00000059146	Ntrk3	AW125844|Ntrk3_tv3|TrkC	neurotrophic tyrosine kinase, receptor, type 3	protein-coding	4.071	0.567	0.228	2.363	2.047	0.791	3.087	4.440	3.092	3.605	2.247	2.344	5.157	4.564	3.525	5.465	3.531	2.981	0.779	0.699	0.289	0.928	0.339	0.179	2.700
11799	chr5	136188122	136190245	+	0	NA	intron (NM_025774, intron 5 of 5)	B1_Mus2|SINE|Alu	9771	NM_025774	66801	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	5.469	13.413	6.528	5.078	4.035	2.597	4.159	4.134	3.593	2.889	2.975	2.633	2.364	4.245	5.144	4.394	2.786	4.407	2.002	1.138	1.468	2.148	nan	1.178	4.559
10907	chr4	149361517	149383892	+	0	NA	intron (NM_022022, intron 7 of 26)	intron (NM_022022, intron 7 of 26)	38065	NR_131918	74310	Mm.440455	NR_131918	ENSMUSG00000085286	Ube4bos3	1700121F15Rik	ubiquitination factor E4B, opposite strand 3	ncRNA	5.885	nan	0.951	5.888	5.184	3.715	6.386	6.736	4.396	5.851	2.282	1.461	5.426	8.415	6.313	6.534	3.482	5.690	3.775	2.468	2.133	9.262	3.074	2.764	7.787
2659	chr11	94425667	94426929	+	0	NA	intron (NM_001177888, intron 23 of 34)	intron (NM_001177888, intron 23 of 34)	-33322	NM_029600	76408	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	1.570	1.711	0.508	4.394	0.980	0.667	5.062	6.181	2.429	4.065	2.255	2.125	2.097	4.306	4.278	3.449	2.229	3.540	1.528	nan	1.567	4.410	2.204	nan	4.189
8044	chr2	26802130	26809233	+	0	NA	Intergenic	Lx5|LINE|L1	59314	NM_030718	80908	Mm.160386	NM_030718	ENSMUSG00000015787	Abo	NAGAT	ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase, transferase B, alpha 1-3-galactosyltransferase)	protein-coding	0.956	0.957	0.491	1.043	0.369	0.087	0.668	2.995	nan	0.401	0.380	0.283	1.238	1.588	1.291	1.805	0.945	1.063	1.238	0.974	0.563	5.383	0.360	0.187	2.343
10627	chr4	132311577	132314316	+	0	NA	intron (NM_027925, intron 8 of 8)	B1_Mm|SINE|Alu	2243	NR_028537	100217437		NR_028537		Snord99	MBII-420	small nucleolar RNA, C/D box 99	snoRNA	2.086	3.123	1.371	2.435	2.364	1.796	3.214	3.270	2.320	3.207	2.264	1.251	5.293	7.773	nan	2.228	2.615	2.131	1.962	2.401	1.718	3.307	1.198	1.187	2.598
7017	chr18	11015226	11016858	+	0	NA	Intergenic	Intergenic	-36468	NM_010258	14465	Mm.329287	NM_010258	ENSMUSG00000005836	Gata6	AA410133|GATA-6	GATA binding protein 6	protein-coding	nan	0.711	0.623	1.302	1.347	1.202	2.708	2.185	1.629	1.268	0.722	0.666	2.653	4.458	2.410	1.067	1.446	1.409	0.558	0.336	0.735	0.433	0.538	0.449	1.108
513	chr1	120553815	120558524	+	0	NA	Intergenic	Lx5|LINE|L1	-46318	NM_010133	13798	Mm.2657	NM_010133	ENSMUSG00000058665	En1	En-1|Mo-en.1|engrailed-1	engrailed 1	protein-coding	1.645	0.789	0.409	1.018	1.339	0.575	3.387	1.752	1.233	1.351	0.576	0.475	3.207	2.265	2.097	4.710	2.152	2.608	1.013	0.659	0.599	0.795	0.500	0.449	1.875
50	chr1	21001835	21003467	+	0	NA	intron (NM_177409, intron 10 of 10)	intron (NM_177409, intron 10 of 10)	51025	NM_027974	71877	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	nan	1.138	0.474	1.510	1.706	0.935	1.682	2.195	1.026	1.513	0.841	0.626	1.898	3.537	4.135	1.971	0.733	1.857	0.538	0.265	0.251	0.863	0.323	0.243	0.921
3938	chr13	33092724	33097444	+	0	NA	TTS (NM_173052)	TTS (NM_173052)	10981	NM_173052	282663	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	7.467	6.219	3.030	6.035	5.155	2.393	nan	nan	5.241	nan	9.772	4.626	4.120	6.564	4.555	nan	4.226	7.579	2.371	1.903	0.915	1.596	1.613	1.289	nan
5903	chr16	22427881	22445133	+	0	NA	5' UTR (NM_023794, exon 2 of 13)	5' UTR (NM_023794, exon 2 of 13)	3063	NM_023794	104156	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	5.193	1.690	0.783	3.784	3.938	2.392	4.817	5.388	4.153	5.514	1.644	1.594	6.335	6.575	5.707	nan	5.917	5.701	0.871	0.917	0.706	1.972	0.697	0.507	8.193
9277	chr3	51361471	51364864	+	0	NA	Intergenic	MTC|LTR|ERVL-MaLR	-22523	NM_023502	69257	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	7.784	7.914	4.029	9.466	5.466	4.571	7.578	6.620	4.315	8.582	4.695	4.278	7.508	8.982	6.865	7.058	6.664	7.600	6.281	4.513	4.254	5.542	6.832	8.194	10.874
15473	chr9	106793164	106795380	+	0	NA	Intergenic	B1_Mm|SINE|Alu	-5059	NM_030730	81000	Mm.246689	NM_030730	ENSMUSG00000040661	Rad54l2	Arip4|D130058C05|G630026H09Rik|Srisnf2l	RAD54 like 2 (S. cerevisiae)	protein-coding	7.773	13.522	3.310	8.583	3.301	1.653	4.963	6.200	5.483	8.058	5.566	4.123	6.695	7.054	7.733	9.634	4.087	nan	6.369	3.004	2.519	6.854	3.477	3.048	12.138
11821	chr5	136895495	136901448	+	0	NA	Intergenic	RLTR11A|LTR|ERVK	-9679	NM_026073	67286	Mm.41779	NM_026073	ENSMUSG00000007987	Ift22	3110017O03Rik|AI835745|AI847427|Rabl5	intraflagellar transport 22	protein-coding	2.473	0.953	0.591	2.517	3.192	1.487	3.311	3.388	3.091	3.579	1.216	1.140	3.351	5.592	3.620	3.690	2.343	4.401	0.734	0.590	0.385	0.761	nan	0.329	1.717
8629	chr2	126498388	126507950	+	0	NA	Intergenic	Intergenic	-11616	NM_001080944	241633	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	A530043E15|Im	ATPase, class I, type 8B, member 4	protein-coding	10.321	8.133	3.646	8.559	6.423	5.814	9.617	7.143	8.609	12.428	4.476	2.370	11.846	10.989	8.238	10.697	11.611	10.065	nan	2.164	2.862	3.439	2.702	3.247	12.673
2633	chr11	90529269	90530210	+	0	NA	intron (NM_011505, intron 16 of 17)	Lx3A|LINE|L1	108369	NM_011505	20913	Mm.207203	NM_011505	ENSMUSG00000020546	Stxbp4	6030470M02Rik|Synip	syntaxin binding protein 4	protein-coding	2.486	0.544	0.140	1.564	3.239	2.107	1.267	3.694	6.211	4.922	0.767	3.457	2.075	3.263	2.313	2.700	3.819	4.382	0.686	1.375	1.256	nan	1.134	0.956	nan
11203	chr5	40152309	40153684	+	0	NA	Intergenic	L1Md_T|LINE|L1	-508365	NM_010474	15476	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	3.614	0.216	0.430	0.956	2.116	0.350	6.104	4.814	4.059	2.248	4.728	4.652	4.692	3.747	4.606	3.287	3.410	3.160	0.897	0.227	0.432	0.335	0.601	0.068	2.296
12791	chr6	135003882	135006811	+	0	NA	Intergenic	RLTR10-int|LTR|ERVK	-6266	NM_026360	67755	Mm.166524	NM_026360	ENSMUSG00000030204	Ddx47	4930588A18Rik|C77285	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein-coding	2.127	0.573	0.673	1.977	3.037	2.429	3.160	2.373	0.967	1.545	1.173	1.230	1.974	5.638	nan	4.440	1.564	2.244	nan	0.720	0.454	0.659	0.558	0.772	nan
11755	chr5	130554135	130555836	+	0	NA	intron (NM_021371, intron 2 of 5)	intron (NM_021371, intron 2 of 5)	106193	NM_021371	140904	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	4.172	8.492	3.537	4.678	1.726	1.951	6.439	2.771	2.072	5.622	3.252	4.029	3.725	5.602	6.209	5.542	3.290	3.500	4.502	2.027	3.209	5.349	nan	4.374	6.367
15680	chrX	12434340	12436832	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-80590	NR_045321	100043946	Mm.211985	NR_045321	ENSMUSG00000087591	Gm14635	OTTMUSG00000017536	predicted gene 14635	ncRNA	6.326	2.177	1.453	3.114	3.163	1.683	4.392	4.359	3.028	3.341	3.324	2.516	3.587	4.624	3.371	3.905	4.256	3.396	2.002	1.796	2.285	1.763	3.129	2.445	4.106
10773	chr4	138310105	138312922	+	0	NA	exon (NM_007838, exon 9 of 11)	exon (NM_007838, exon 9 of 11)	4687	NR_105986	102466788		NR_105986	ENSMUSG00000099200	Mir7019	Gm27947|mmu-mir-7019	microRNA 7019	ncRNA	nan	0.795	0.443	0.452	0.068	0.084	1.483	0.901	nan	0.415	1.565	0.640	0.453	0.648	0.885	0.590	0.432	nan	9.598	5.550	3.720	8.939	6.335	4.483	0.961
797	chr1	162266293	162270788	+	0	NA	intron (NM_001038619, intron 13 of 20)	L1Md_A|LINE|L1	45172	NR_029796	387210		NR_029796	ENSMUSG00000065516	Mir214	Mirn214|mir-214|mmu-mir-214	microRNA 214	ncRNA	2.536	0.788	0.461	1.107	1.060	0.466	3.853	2.406	nan	1.290	0.599	0.520	1.982	2.589	4.939	6.514	4.521	2.641	nan	1.687	0.764	2.051	nan	0.893	2.838
7246	chr18	55055670	55057205	+	0	NA	Intergenic	Intergenic	-66257	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	nan	nan	0.560	2.068	1.336	0.587	2.134	nan	2.420	2.558	2.653	1.283	4.410	3.781	3.090	3.402	1.811	nan	nan	0.358	0.055	nan	0.359	0.278	2.656
2459	chr11	74946117	74956762	+	0	NA	intron (NM_001002764, intron 8 of 18)	L1_Mus2|LINE|L1	25567	NM_001002764	103677	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	nan	2.285	0.931	4.168	1.793	0.713	nan	5.046	2.701	3.265	1.941	1.948	3.213	2.916	nan	4.732	2.649	nan	1.618	1.574	nan	2.807	0.943	0.491	3.404
10609	chr4	131765290	131774203	+	0	NA	intron (NM_001083119, intron 30 of 30)	intron (NM_001083119, intron 30 of 30)	68532	NM_011214	19273	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding	7.235	4.281	1.960	5.444	4.503	3.578	5.858	5.653	5.174	7.229	3.734	2.045	6.166	7.112	6.054	7.390	5.458	6.787	2.865	2.225	2.908	3.400	1.878	2.158	9.089
3543	chr12	83070201	83074017	+	0	NA	intron (NM_001310478, intron 12 of 17)	B3A|SINE|B2	-132954	NR_046045	74283	Mm.398247	NR_046045	ENSMUSG00000100890	1700085C21Rik	-	RIKEN cDNA 1700085C21 gene	ncRNA	13.374	9.022	2.997	7.432	4.932	2.160	5.999	7.241	8.574	9.643	5.218	2.696	10.396	10.818	9.383	12.431	9.781	11.810	1.143	0.768	0.378	1.056	0.693	0.392	15.706
5570	chr15	91519045	91519738	+	0	NA	intron (NM_001033633, intron 1 of 9)	intron (NM_001033633, intron 1 of 9)	53870	NM_001033633	239606	Mm.360596	NM_001033633	ENSMUSG00000036298	Slc2a13	6530403A04|A630029G22Rik|AI505012|Gm308	solute carrier family 2 (facilitated glucose transporter), member 13	protein-coding	2.194	0.733	0.835	1.314	1.452	0.942	2.313	2.287	1.997	2.928	0.709	0.446	6.047	3.787	1.959	nan	2.259	3.087	nan	0.918	0.276	nan	0.818	0.750	nan
6972	chr18	3499613	3502537	+	0	NA	Intergenic	Intergenic	-6882	NM_026505	68010	Mm.284863	NM_026505	ENSMUSG00000024232	Bambi	2610003H06Rik	BMP and activin membrane-bound inhibitor	protein-coding	5.535	0.363	0.445	2.005	1.926	0.682	4.592	4.763	4.370	5.278	0.907	0.655	6.247	6.510	3.890	5.056	7.069	4.448	1.212	0.940	0.778	0.516	1.718	0.838	3.918
4318	chr13	98939832	98941833	+	0	NA	Intergenic	Intergenic	-14448	NM_178716	238799	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0.532	0.827	0.744	0.691	0.419	0.410	0.183	0.408	0.692	0.903	0.759	0.801	0.256	0.481	0.685	0.767	nan	nan	6.446	4.445	2.652	4.622	6.974	4.008	0.611
12070	chr6	17255594	17260122	+	0	NA	Intergenic	Intergenic	-23327	NM_001277756	12390	Mm.396075	NM_016900	ENSMUSG00000000058	Cav2	AI447843	caveolin 2	protein-coding	5.127	nan	0.505	6.729	3.691	1.904	3.094	4.219	2.768	3.295	4.136	2.254	2.526	4.436	4.011	5.035	2.878	5.771	1.124	1.133	0.800	1.219	1.038	0.978	4.855
9150	chr3	16331143	16334719	+	0	NA	Intergenic	ORR1A3-int|LTR|ERVL-MaLR	149748	NM_001145919	229096	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	4.625	nan	0.292	2.280	2.423	0.727	6.809	4.469	3.849	4.955	0.953	0.449	7.156	4.631	5.985	4.559	4.831	6.317	0.448	0.291	0.103	0.267	0.188	0.178	3.561
5207	chr15	58817022	58820398	+	0	NA	intron (NM_175212, intron 1 of 6)	MLT1H1|LTR|ERVL-MaLR	4717	NM_175212	74868	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	5.848	1.967	0.566	5.827	2.927	1.298	5.593	10.683	3.927	5.924	0.546	0.806	5.122	5.810	8.180	6.927	3.453	6.597	2.784	1.766	0.956	3.428	1.516	0.852	6.828
7645	chr19	23220763	23226755	+	0	NA	intron (NM_153808, intron 17 of 23)	Lx9|LINE|L1	48840	NM_001252685	226026	Mm.23267	NM_153808	ENSMUSG00000024943	Smc5	MLZ-453|SMC-5|Smc5l1|mKIAA0594|mSMC5	structural maintenance of chromosomes 5	protein-coding	4.048	8.437	4.152	5.163	2.791	1.443	1.790	4.122	2.970	2.808	nan	1.965	2.443	3.906	3.439	4.277	3.271	4.512	nan	1.050	0.619	1.442	nan	0.689	4.702
5323	chr15	74567515	74569018	+	0	NA	intron (NM_174991, intron 18 of 30)	intron (NM_174991, intron 18 of 30)	52070	NM_174991	107831	Mm.43133	NM_174991	ENSMUSG00000034730	Adgrb1	B830018M07Rik|Bai1|R75078|mKIAA4089	adhesion G protein-coupled receptor B1	protein-coding	1.040	nan	0.878	nan	1.294	0.604	1.656	4.186	1.563	1.510	nan	1.808	4.419	4.225	2.248	2.723	1.895	1.870	1.208	1.185	0.517	nan	1.054	0.197	2.136
10250	chr4	88572874	88589647	+	0	NA	Intergenic	L1_Mur2|LINE|L1	-9462	NM_206975	404549	Mm.377947	NM_206975	ENSMUSG00000095896	Ifna14	OTTMUSG00000007662	interferon alpha 14	protein-coding	3.165	nan	0.518	1.648	1.927	0.948	4.055	nan	nan	3.839	12.049	7.038	4.270	5.730	3.855	3.952	2.714	nan	0.730	nan	0.319	1.385	0.549	0.496	nan
9402	chr3	84679282	84681215	+	0	NA	intron (NM_177260, intron 1 of 6)	intron (NM_177260, intron 1 of 6)	14056	NM_177260	320782	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	5.882	0.805	0.622	3.542	2.924	1.023	2.961	4.759	4.081	4.654	1.463	1.693	8.602	5.498	4.208	4.494	5.412	5.296	nan	1.015	0.324	0.821	0.764	0.655	3.248
645	chr1	135585872	135596881	+	0	NA	Intergenic	Intergenic	-6021	NM_173437	215690	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	4.579	13.852	7.478	nan	1.995	1.577	3.274	3.243	2.981	2.795	2.133	1.172	3.278	nan	2.628	nan	2.852	3.294	0.814	1.185	1.205	0.525	0.743	0.657	nan
11796	chr5	136145399	136153557	+	0	NA	3' UTR (NM_178751, exon 3 of 3)	3' UTR (NM_178751, exon 3 of 3)	10697	NM_028070	72041	Mm.486605	NM_028070	ENSMUSG00000039754	Alkbh4	2010004B12Rik|Abj4	alkB homolog 4, lysine demethylase	protein-coding	4.965	1.601	0.901	4.032	3.446	2.576	8.901	7.719	4.317	4.499	4.086	3.761	6.973	8.949	5.986	7.188	5.755	3.649	3.099	1.486	1.420	1.440	nan	3.214	2.606
2566	chr11	85642707	85645911	+	0	NA	intron (NM_138681, intron 24 of 25)	intron (NM_138681, intron 24 of 25)	75435	NR_045875	71489	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	2.512	0.916	0.170	6.035	1.052	0.362	1.458	1.018	1.440	2.954	1.588	0.714	0.668	1.755	1.452	1.704	0.550	2.378	0.670	0.429	0.421	nan	0.328	0.322	3.000
11913	chr5	143531104	143532915	+	0	NA	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-3978	NM_001347530	19353	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	RAS-related C3 botulinum substrate 1	protein-coding	4.670	0.519	0.689	2.302	2.127	1.128	4.713	3.204	nan	2.533	2.278	1.674	2.127	4.709	3.182	4.566	2.827	4.222	1.251	1.198	0.793	1.357	0.844	1.120	4.064
10704	chr4	135239735	135243343	+	0	NA	intron (NM_013885, intron 1 of 5)	intron (NM_013885, intron 1 of 5)	31221	NM_013885	29876	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	nan	7.377	2.841	5.106	2.192	1.200	6.201	5.225	3.390	5.335	3.332	2.242	7.020	7.380	6.616	6.768	3.507	6.748	2.455	0.902	0.664	3.591	nan	1.203	9.254
9789	chr3	126341179	126344376	+	0	NA	Intergenic	Intergenic	-21075	NM_173451	271970	Mm.317021	NM_173451	ENSMUSG00000046561	Arsj	9330196J05Rik|D830047F08	arylsulfatase J	protein-coding	6.334	1.010	0.804	4.931	5.071	3.032	7.286	4.450	4.985	5.208	2.741	1.348	7.692	9.672	6.640	6.576	6.072	7.745	2.628	2.065	0.847	2.021	4.077	2.399	5.702
12024	chr6	4853101	4854277	+	0	NA	Intergenic	L1MA6|LINE|L1	-49631	NM_181595	243725	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	8.253	0.452	0.525	10.432	5.123	5.063	14.772	10.300	7.564	18.089	0.901	1.911	12.623	13.822	13.854	17.645	11.910	11.891	5.436	2.535	5.580	7.394	4.863	7.137	21.338
6406	chr17	25214883	25219396	+	0	NA	intron (NM_001290736, intron 9 of 14)	B3|SINE|B2	-5443	NM_028789	74154	Mm.267353	NM_028789	ENSMUSG00000015127	Unkl	1300004G08Rik	unkempt family like zinc finger	protein-coding	4.397	2.259	0.624	7.816	1.233	0.453	2.316	1.258	2.454	2.912	1.574	1.001	1.652	2.273	2.417	3.334	1.319	4.376	1.119	0.752	0.529	1.387	0.498	0.239	4.593
1176	chr10	23856742	23860028	+	0	NA	intron (NM_011979, intron 3 of 6)	MMETn-int|LTR|ERVK	6923	NM_011979	26464	Mm.27334	NM_011979	ENSMUSG00000020010	Vnn3	-	vanin 3	protein-coding	nan	0.549	0.476	1.060	1.658	0.671	5.335	4.457	2.450	2.238	0.748	0.643	4.687	5.307	3.607	4.392	4.630	2.934	0.774	1.065	0.661	0.686	0.608	0.806	1.517
14312	chr8	73252963	73254979	+	0	NA	intron (NM_010687, intron 1 of 14)	RLTR6B_Mm|LTR|ERV1	99569	NM_001317391	16795	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	2.990	nan	1.873	2.471	3.462	1.333	nan	3.497	2.483	4.386	1.291	0.876	2.754	4.085	3.264	nan	5.271	3.005	0.628	1.771	1.336	nan	0.404	1.320	4.575
9057	chr2	169951318	169960249	+	0	NA	Intergenic	Intergenic	7404	NR_131974	446211	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	10.318	10.404	4.568	8.308	5.477	2.930	8.141	9.658	6.017	9.104	5.754	4.377	10.163	10.970	9.624	11.422	10.083	9.310	nan	3.892	2.698	6.350	3.523	2.867	10.709
1039	chr1	193812763	193814341	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-306022	NR_029592	387201		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	11.884	8.927	6.300	4.910	4.991	2.967	11.765	6.393	6.190	5.124	5.556	3.372	8.167	7.626	7.616	11.385	10.525	7.858	3.179	3.098	3.325	3.544	3.361	4.190	10.592
2881	chr11	105810676	105815883	+	0	NA	intron (NM_181071, intron 8 of 25)	L1Md_F|LINE|L1	130868	NM_007805	13056	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	6.740	1.150	0.657	nan	4.708	3.745	5.527	6.664	5.076	6.177	6.034	3.802	6.239	7.636	4.528	4.140	3.857	nan	1.138	1.152	1.650	nan	1.203	0.924	4.918
28	chr1	14296070	14300212	+	0	NA	intron (NM_001252192, intron 2 of 16)	intron (NM_001252192, intron 2 of 16)	12058	NM_001310459	14048	Mm.250185	NM_010164	ENSMUSG00000025932	Eya1	bor	EYA transcriptional coactivator and phosphatase 1	protein-coding	6.148	0.756	0.369	5.623	1.757	0.427	0.572	0.758	5.200	5.129	8.228	5.652	1.341	0.977	2.457	3.743	3.671	7.815	0.627	0.461	0.207	0.859	0.232	0.288	6.416
4723	chr14	60058436	60060776	+	0	NA	intron (NM_015803, intron 1 of 35)	intron (NM_015803, intron 1 of 35)	27228	NM_015803	50769	Mm.319599	NM_015803	ENSMUSG00000021983	Atp8a2	AI415030|Atpc1b|agil|wl	ATPase, aminophospholipid transporter-like, class I, type 8A, member 2	protein-coding	6.522	13.926	7.181	7.416	4.658	1.964	4.599	6.895	5.412	6.141	4.859	3.098	5.283	7.451	7.140	8.485	5.652	7.330	5.527	2.281	1.964	4.255	3.230	2.844	9.484
10283	chr4	94881219	94883841	+	0	NA	Intergenic	L1Md_A|LINE|L1	46313	NM_027089	67753	Mm.25097	NM_027089	ENSMUSG00000028575	Eqtn	1700028B15Rik|4930579C15Rik|Afaf|C81058|Eqtl|Eqts	equatorin, sperm acrosome associated	protein-coding	4.937	5.078	2.884	2.554	4.593	1.682	2.127	3.321	3.505	nan	1.901	0.848	4.532	6.316	3.532	4.675	3.003	3.805	1.062	1.037	0.421	nan	1.027	0.870	3.027
2087	chr11	35743157	35750049	+	0	NA	Intergenic	B3|SINE|B2	-22892	NM_145962	211347	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	5.714	0.560	0.336	2.763	3.063	1.493	3.075	7.090	5.333	6.108	4.579	2.544	4.480	4.978	7.113	7.645	4.329	6.596	1.104	1.010	0.670	1.511	1.162	1.009	8.185
3474	chr12	79326307	79328969	+	0	NA	intron (NM_009014, intron 7 of 10)	intron (NM_009014, intron 7 of 10)	30287	NM_001252562	19363	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	10.252	10.459	4.211	9.838	6.642	4.979	7.830	6.368	4.710	11.620	6.463	3.541	6.988	9.949	8.429	10.007	7.580	8.441	6.180	4.315	4.328	5.961	4.318	6.189	19.580
10223	chr4	82342261	82346501	+	0	NA	intron (NM_001113210, intron 6 of 11)	intron (NM_001113210, intron 6 of 11)	161398	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.460	0.430	0.184	0.363	0.086	0.059	0.318	0.309	0.510	0.579	0.299	0.237	0.229	0.227	0.278	0.666	0.310	0.547	6.710	6.070	3.024	8.526	1.831	0.768	0.607
9687	chr3	107926758	107930772	+	0	NA	intron (NM_026672, intron 7 of 7)	intron (NM_026672, intron 7 of 7)	2980	NM_026672	68312	Mm.458189	NM_026672	ENSMUSG00000004035	Gstm7	0610005A07Rik|AI894236|Cd203c	glutathione S-transferase, mu 7	protein-coding	2.922	0.910	0.597	1.354	2.978	1.842	3.494	4.845	2.401	1.897	2.512	2.070	3.804	3.279	nan	2.813	3.702	3.073	1.005	1.257	0.992	0.645	1.204	0.776	1.403
3320	chr12	52944481	52949863	+	0	NA	intron (NM_198111, intron 7 of 13)	intron (NM_198111, intron 7 of 13)	247789	NM_198111	238161	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	6.411	3.795	2.078	5.926	6.483	5.513	4.863	5.039	4.870	4.453	3.029	3.361	4.665	5.608	5.370	5.280	4.670	4.840	3.095	1.842	2.543	3.830	5.375	4.743	5.559
10900	chr4	149148750	149152572	+	0	NA	exon (NM_001081274, exon 13 of 13)	exon (NM_001081274, exon 13 of 13)	-13061	NM_027263	69928	Mm.260893	NM_027263	ENSMUSG00000073705	Apitd1	2610040C18Rik|2810407L01Rik|CENP-S	apoptosis-inducing, TAF9-like domain 1	protein-coding	1.552	nan	0.906	2.287	2.752	2.167	2.793	3.583	1.203	0.877	1.985	1.373	1.392	3.579	3.324	1.540	0.869	1.254	5.829	3.260	3.482	8.821	10.522	9.011	1.513
8332	chr2	70662897	70664445	+	0	NA	intron (NM_027352, intron 1 of 9)	intron (NM_027352, intron 1 of 9)	2162	NM_027352	70231	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|ENSMUSG00000075299|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	10.987	16.993	6.294	11.588	6.244	6.439	11.600	10.564	5.436	24.936	7.869	4.317	10.085	12.578	8.878	12.064	11.242	9.905	6.907	3.475	8.173	5.969	5.142	10.970	21.418
5106	chr15	35163230	35164714	+	0	NA	Intergenic	ETnERV2-int|LTR|ERVK	-8166	NM_019635	56274	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	1.415	0.481	0.174	1.359	0.759	0.111	2.324	0.644	1.430	1.964	0.622	0.273	4.631	3.112	1.209	1.006	1.576	1.545	0.412	0.115	0.038	nan	0.438	0.242	nan
8432	chr2	90921778	90931081	+	0	NA	Intergenic	MER21B|LTR|ERVL	-8379	NM_025576	66461	Mm.23926	NM_025576		Ptpmt1	1110001D10Rik|2810004N20Rik|PLIP	protein tyrosine phosphatase, mitochondrial 1	protein-coding	6.538	6.264	1.891	4.919	2.128	1.367	1.874	2.159	2.308	3.665	3.493	1.134	1.983	3.818	2.860	3.671	2.054	3.572	0.827	1.594	1.208	0.942	0.496	0.377	5.064
2184	chr11	52786252	52790845	+	0	NA	intron (NM_177059, intron 2 of 15)	intron (NM_177059, intron 2 of 15)	23842	NM_177059	320027	Mm.44518	NM_177059	ENSMUSG00000036264	Fstl4	B230374F23Rik|SPIG1|mKIAA1061	follistatin-like 4	protein-coding	4.432	0.466	0.348	0.511	0.349	0.143	4.308	6.030	3.383	3.439	0.820	1.358	5.180	3.452	1.980	3.668	4.739	nan	nan	1.047	0.528	nan	nan	0.767	1.891
2298	chr11	61497083	61498263	+	0	NA	Intergenic	RMER4B|LTR|ERVK	-3407	NM_001291034	23939	Mm.38172	NM_011841	ENSMUSG00000001034	Mapk7	BMK-1|BMK1|ERK-5|ERK5|Erk5-T|PRKM7	mitogen-activated protein kinase 7	protein-coding	3.600	8.836	2.380	5.835	2.107	0.524	4.448	6.653	2.393	5.231	6.204	2.844	4.183	5.704	7.098	8.778	3.225	5.232	4.146	1.025	1.258	4.235	1.254	2.069	10.043
3161	chr12	5276069	5278187	+	0	NA	intron (NM_001164493, intron 2 of 13)	intron (NM_001164493, intron 2 of 13)	98554	NM_001164493	208439	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	2.022	1.105	0.696	2.157	2.290	1.383	1.444	1.532	1.696	1.747	0.294	0.193	1.751	5.202	1.652	1.774	1.952	2.459	0.448	0.555	0.347	0.727	0.304	0.524	1.861
12288	chr6	66934030	66935156	+	0	NA	intron (NM_001177556, intron 2 of 3)	intron (NM_001177556, intron 2 of 3)	37702	NM_001177558	14701	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	1.528	6.452	2.373	2.058	1.635	0.766	4.827	4.136	1.870	2.077	1.442	0.768	3.389	4.681	4.320	5.798	4.149	3.431	1.061	0.760	0.024	1.111	0.464	0.506	3.290
12148	chr6	34559129	34561842	+	0	NA	Intergenic	Intergenic	-38019	NM_001347100	109624	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	5.256	1.625	0.927	3.002	2.903	0.969	10.568	4.408	1.990	2.540	3.730	0.925	8.357	8.292	8.281	5.801	3.179	nan	nan	1.482	1.042	nan	nan	0.311	3.338
8341	chr2	71576541	71578849	+	0	NA	intron (NR_039557, intron 2 of 3).2	B3A|SINE|B2	-30941	NM_010054	13392	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	7.346	1.148	0.861	2.064	2.353	1.007	5.182	7.106	2.982	2.829	3.425	1.831	7.856	4.739	5.865	6.963	6.446	6.643	1.472	0.684	0.621	1.137	1.077	0.864	7.004
6643	chr17	44844897	44849022	+	0	NA	intron (NM_178652, intron 2 of 11)	L1MD|LINE|L1	-32162	NR_073392	12393	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	7.275	2.120	1.136	4.179	6.269	3.459	9.207	4.716	4.656	4.867	6.550	3.755	6.532	9.712	6.214	6.726	4.885	5.128	0.851	1.078	0.921	0.832	0.570	0.365	4.575
7936	chr2	4653160	4662723	+	0	NA	Intergenic	Intergenic	-5855	NM_026045	67229	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	8.434	0.493	0.381	3.734	6.730	4.557	8.170	6.841	5.372	6.526	1.859	0.920	9.383	9.226	6.073	7.687	8.079	7.704	1.003	1.277	0.917	0.601	1.091	0.878	7.962
8113	chr2	31622625	31628223	+	0	NA	Intergenic	RMER20A|LTR|ERVK	13003	NR_105964	102466214		NR_105964	ENSMUSG00000098904	Mir6998	Gm28024|mmu-mir-6998	microRNA 6998	ncRNA	8.556	2.347	1.000	6.593	4.797	1.888	5.310	9.029	4.038	5.343	3.337	2.087	7.215	7.549	6.049	7.571	7.664	6.520	2.324	1.912	1.151	1.965	2.037	1.275	8.659
12666	chr6	120419116	120423914	+	0	NA	intron (NM_145997, intron 22 of 27)	L1_Mus2|LINE|L1	-41682	NM_008359	16172	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	4.124	10.526	4.878	3.479	2.896	1.741	1.588	2.100	1.850	2.223	2.427	1.036	1.233	2.394	2.270	2.833	2.084	2.202	1.643	1.519	1.312	0.821	nan	0.478	3.670
11426	chr5	91628568	91630302	+	0	NA	Intergenic	Intergenic	111735	NM_145562	231440	Mm.5002	NM_145562	ENSMUSG00000034981	Parm1	2210012L08Rik|9130213B05Rik|W91666	prostate androgen-regulated mucin-like protein 1	protein-coding	4.685	0.681	0.423	1.800	6.307	4.784	4.145	4.072	5.087	4.727	2.116	4.905	3.914	4.820	5.140	4.146	3.702	6.028	0.998	0.880	0.574	0.266	0.594	0.755	2.093
9647	chr3	104802840	104804614	+	0	NA	intron (NM_001163441, intron 5 of 20)	ID_B1|SINE|B4	14578	NM_008619	17454	Mm.1597	NM_008619	ENSMUSG00000002227	Mov10	C77703|Mov-10	Moloney leukemia virus 10	protein-coding	5.341	1.230	0.960	4.201	2.180	1.309	2.427	2.293	4.269	4.551	4.308	2.220	2.602	4.202	nan	3.012	1.754	6.609	1.084	0.654	0.881	1.416	0.858	0.865	4.795
10742	chr4	137213295	137224772	+	0	NA	Intergenic	Intergenic	-53967	NR_040443	100503595	Mm.421314	NR_040443	ENSMUSG00000085833	Gm13003	OTTMUSG00000009822	predicted gene 13003	ncRNA	nan	0.562	0.175	2.252	1.961	1.344	4.967	2.181	nan	1.677	0.745	1.142	2.355	5.854	3.200	1.897	1.399	nan	4.652	2.119	2.378	6.542	nan	2.949	7.022
10738	chr4	137053070	137055195	+	0	NA	Intergenic	Intergenic	-5437	NM_198248	230848	Mm.31068	NM_198248	ENSMUSG00000060862	Zbtb40	BC059177|C230087D24|Gm571|mKIAA0478	zinc finger and BTB domain containing 40	protein-coding	4.048	2.279	0.425	3.023	1.871	1.329	3.882	3.385	nan	2.678	3.447	2.513	2.601	2.832	3.481	3.276	1.735	2.712	0.788	0.942	0.736	1.353	nan	0.541	4.057
5465	chr15	81105882	81111592	+	0	NA	intron (NM_001082536, intron 2 of 13)	intron (NM_001082536, intron 2 of 13)	-3690	NM_153049	223701	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	nan	nan	2.797	nan	0.487	0.284	nan	1.338	0.599	nan	nan	0.379	0.408	nan	0.809	0.721	nan	0.789	3.350	3.880	3.200	6.629	1.100	1.142	0.744
14250	chr8	63818935	63822664	+	0	NA	Intergenic	L1Md_F2|LINE|L1	131371	NM_001195687	244495	Mm.485331	NM_001195687	ENSMUSG00000094443	Sgol2b	EG244495|Gm4975|Sgo2B	shugoshin like 2b (S. pombe)	protein-coding	2.361	0.553	0.413	2.644	3.467	1.122	3.893	7.699	3.327	3.400	2.972	3.001	4.564	6.496	4.869	5.279	4.009	3.187	nan	0.924	0.263	0.903	0.513	0.335	3.082
13582	chr7	117402730	117407504	+	0	NA	intron (NM_175645, intron 1 of 11)	B4|SINE|B4	24138	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	8.984	6.186	4.135	6.250	7.010	4.505	6.663	6.584	5.828	6.163	4.963	3.895	7.174	8.261	5.380	6.223	7.035	8.384	2.064	2.533	1.716	1.677	1.951	1.498	6.452
14611	chr8	113823268	113824624	+	0	NA	intron (NM_172466, intron 3 of 22)	intron (NM_172466, intron 3 of 22)	24893	NM_172466	208936	Mm.167471	NM_172466	ENSMUSG00000053399	Adamts18	9630038L21|ADAMTS21|E130314N14Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18	protein-coding	6.693	13.074	5.467	7.419	3.771	3.602	4.204	7.390	3.713	7.064	5.101	4.574	5.662	6.379	8.070	9.252	4.735	6.359	4.202	4.341	7.050	7.962	5.065	5.779	13.355
1344	chr10	60927408	60928562	+	0	NA	TTS (NR_033616)	TTS (NR_033616)	4962	NR_105835	102466158		NR_105835	ENSMUSG00000099279	Mir6408	Gm27451|mmu-mir-6408	microRNA 6408	ncRNA	1.853	0.831	0.338	2.099	4.682	5.242	0.845	4.212	1.723	1.844	0.579	2.245	1.697	4.647	0.874	1.168	1.112	1.778	nan	0.541	1.062	0.597	0.598	1.000	2.628
2494	chr11	77475685	77478245	+	0	NA	intron (NM_172945, intron 4 of 15)	intron (NM_172945, intron 4 of 15)	12713	NM_172945	268445	Mm.39296	NM_172945	ENSMUSG00000037907	Ankrd13b	AW124583|B930093C12Rik	ankyrin repeat domain 13b	protein-coding	nan	0.388	0.479	1.140	2.109	1.521	nan	2.686	1.109	1.164	0.545	0.327	1.489	4.267	1.724	nan	1.710	1.347	0.979	1.321	nan	1.910	0.529	0.580	0.833
13252	chr7	72526666	72529176	+	0	NA	Intergenic	Intergenic	-221326	NM_001024703	244049	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	3.441	0.395	0.292	4.418	1.587	0.837	1.553	2.738	3.684	2.411	1.166	1.280	2.166	2.457	2.279	2.480	1.265	4.476	0.670	0.954	0.724	0.858	0.491	0.309	2.159
11669	chr5	122668633	122670597	+	0	NA	intron (NM_001038845, intron 8 of 12)	intron (NM_001038845, intron 8 of 12)	19191	NM_001284402	18439	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	3.940	18.315	5.466	2.976	1.763	0.437	0.998	1.626	1.683	2.697	1.354	0.887	0.906	1.744	2.458	2.576	1.161	2.119	nan	nan	0.823	1.045	nan	0.015	4.292
3840	chr13	9329738	9330899	+	0	NA	intron (NM_001081426, intron 1 of 36)	intron (NM_001081426, intron 1 of 36)	53793	NM_001081426	208440	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	2.156	0.614	0.417	1.142	1.949	1.079	1.873	1.965	2.149	2.059	0.942	2.450	2.210	3.227	2.445	3.175	1.278	3.039	1.519	1.213	0.579	1.214	1.323	1.449	1.970
14667	chr8	122190468	122196906	+	0	NA	Intergenic	MER58C|DNA|hAT-Charlie	-88454	NM_009569	22761	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	4.820	0.690	0.507	6.155	4.573	4.109	2.808	4.013	4.897	6.283	5.237	8.384	2.929	5.816	3.605	4.142	2.080	4.769	1.179	1.594	2.000	2.578	1.297	1.421	4.056
7849	chr19	47388764	47390916	+	0	NA	intron (NM_001164717, intron 3 of 13)	intron (NM_001164717, intron 3 of 13)	74571	NM_001164717	14218	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	3.942	4.353	1.344	8.153	5.773	2.562	3.290	6.135	3.517	5.646	9.453	4.165	2.739	5.772	3.837	5.041	3.846	6.931	0.851	0.716	1.263	2.401	1.952	1.171	5.675
13087	chr7	30295818	30300407	+	0	NA	intron (NM_001081114, intron 6 of 13)	intron (NM_001081114, intron 6 of 13)	6359	NM_001081114	76686	Mm.159258	NM_001081114	ENSMUSG00000013921	Clip3	1500005P14Rik|AI844915|Clipr-59	CAP-GLY domain containing linker protein 3	protein-coding	4.787	0.630	0.423	3.533	4.777	2.357	6.562	6.537	3.121	3.480	5.053	2.801	5.760	7.144	5.673	6.655	5.472	6.167	1.429	1.912	1.718	1.544	1.654	1.506	7.320
2329	chr11	64840801	64845420	+	0	NA	Intergenic	Intergenic	-135925	NM_023479	68626	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	5.789	0.568	0.456	3.629	2.229	0.748	5.511	6.071	4.915	6.232	0.852	0.706	7.315	8.288	7.970	9.322	5.107	7.078	0.698	0.536	0.294	0.500	nan	0.414	6.706
3338	chr12	56498395	56500498	+	0	NA	intron (NR_045082, intron 5 of 6)	(GA)n|Simple_repeat|Simple_repeat	29974	NR_045082	104798	Mm.310950	NR_045082		E030019B13Rik	AI413669	RIKEN cDNA E030019B13 gene	ncRNA	12.861	13.516	4.890	11.323	5.449	3.149	7.424	7.479	6.506	8.365	6.842	4.193	9.469	9.414	9.701	10.936	7.887	10.554	4.625	2.648	1.546	5.017	2.993	2.388	15.089
13389	chr7	88062963	88064715	+	0	NA	intron (NM_001143834, intron 8 of 10)	L1Md_F2|LINE|L1	-214246	NM_009982	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	3.477	4.303	2.218	1.225	1.582	0.799	4.941	7.340	3.502	2.551	4.961	3.684	3.508	5.050	4.162	2.651	1.916	3.448	2.975	1.706	0.350	nan	1.689	1.042	1.955
4437	chr13	115895913	115897127	+	0	NA	Intergenic	(TTC)n|Simple_repeat|Simple_repeat	413168	NM_021459	16392	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	4.520	0.773	0.921	4.174	1.110	0.786	3.195	2.485	1.779	2.218	0.352	0.854	3.564	2.381	3.834	2.434	1.199	3.944	0.332	0.534	0.277	0.814	0.150	0.177	2.425
8998	chr2	165860447	165861614	+	0	NA	intron (NM_027230, intron 2 of 23)	intron (NM_027230, intron 2 of 23)	-2857	NM_001252585	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	6.480	7.208	4.124	5.201	6.334	2.247	5.658	7.549	4.126	4.153	2.665	2.485	6.038	5.917	4.143	6.271	6.981	4.355	3.950	4.601	1.305	3.902	4.629	2.705	4.987
13683	chr7	125620651	125628796	+	0	NA	intron (NM_021887, intron 2 of 8)	G-rich|Low_complexity|Low_complexity	21294	NM_021887	60504	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	4.067	1.557	0.728	4.272	3.133	1.509	4.939	5.175	3.694	3.265	2.728	1.911	4.772	4.809	nan	4.562	2.925	4.198	1.136	0.977	0.586	1.318	0.834	0.411	3.213
14649	chr8	120049477	120056796	+	0	NA	TTS (NM_001310635)	TTS (NM_001310635)	48336	NM_133967	102193	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	1.438	10.702	5.109	1.372	0.599	0.314	0.508	0.811	0.874	0.922	1.390	0.716	0.534	0.837	0.881	nan	0.808	0.963	0.935	1.364	1.093	1.816	0.487	0.489	1.159
6150	chr16	64757223	64760028	+	0	NA	Intergenic	Intergenic	12314	NM_026273	67609	Mm.212157	NM_026273	ENSMUSG00000059920	4930453N24Rik	AI649104|din	RIKEN cDNA 4930453N24 gene	protein-coding	7.617	2.129	0.790	3.455	4.184	2.183	4.106	5.938	5.458	4.268	4.900	3.238	7.263	6.406	5.915	7.136	4.123	7.886	0.957	0.768	0.639	0.671	0.280	0.436	5.242
8483	chr2	102584366	102587392	+	0	NA	intron (NM_173749, intron 2 of 10)	intron (NM_173749, intron 2 of 10)	35858	NM_173749	210622	Mm.28649	NM_173749	ENSMUSG00000027188	Pamr1	5930437L24|E430002G05Rik|Ramp	peptidase domain containing associated with muscle regeneration 1	protein-coding	7.059	2.586	1.244	4.451	2.120	0.834	5.531	6.412	5.275	5.866	2.374	1.159	7.748	7.538	6.663	8.218	8.294	6.363	3.289	1.726	1.016	3.106	1.868	1.088	7.851
15516	chr9	109777362	109779212	+	0	NA	intron (NM_001303003, intron 5 of 9)	intron (NM_001303003, intron 5 of 9)	12363	NM_001303003	76998	Mm.442009	NM_001303003	ENSMUSG00000104614	Fbxw27	1700124P09Rik	F-box and WD-40 domain protein 27	protein-coding	6.096	11.816	3.301	5.244	1.336	1.593	4.653	6.039	3.827	6.946	4.178	2.676	5.485	5.425	6.481	8.661	3.883	5.609	6.367	2.995	3.360	5.970	3.952	5.279	13.801
620	chr1	134223113	134225699	+	0	NA	intron (NM_001291930, intron 1 of 1)	intron (NM_001291930, intron 1 of 1)	10450	NM_001291928	11539	Mm.298908	NM_009629	ENSMUSG00000042429	Adora1	A1-AR|A1AR|A1R|AA1R|AI848715|BB176431|Ri	adenosine A1 receptor	protein-coding	5.157	2.547	0.755	2.856	1.444	0.530	1.945	4.076	1.987	1.935	1.216	0.444	3.621	3.738	2.577	3.877	1.858	3.317	4.077	1.166	0.703	4.307	1.546	1.109	4.865
5477	chr15	81711460	81712428	+	0	NA	intron (NM_001146174, intron 8 of 15)	intron (NM_001146174, intron 8 of 15)	-14657	NM_001164320	214685	Mm.393287	NM_001164320	ENSMUSG00000063765	Chadl	AY100452|D930017K21Rik	chondroadherin-like	protein-coding	1.714	nan	0.363	nan	0.507	0.379	2.190	5.487	0.856	nan	nan	0.412	3.159	4.431	2.065	1.237	1.323	2.683	0.960	0.176	0.233	nan	0.349	0.310	1.595
5565	chr15	90879496	90881442	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	18007	NR_033583	20738	Mm.431547	NR_033583		Spn-ps	Cd43-ps	sialophorin, pseudogene	pseudo	4.417	0.898	0.068	4.007	1.086	0.671	6.654	10.694	nan	5.422	7.457	3.019	4.156	4.076	7.287	6.359	4.314	6.548	nan	1.083	1.649	nan	0.632	0.552	8.798
8389	chr2	77117942	77121048	+	0	NA	intron (NM_001025576, intron 5 of 23)	intron (NM_001025576, intron 5 of 23)	51140	NM_001025576	545428	Mm.26579	NM_001025576	ENSMUSG00000044033	Ccdc141	2610301F02Rik|CAMDI|ENSMUSG00000075261	coiled-coil domain containing 141	protein-coding	6.683	1.472	0.723	nan	2.497	1.189	5.483	5.011	2.762	7.261	2.281	1.683	5.413	6.200	nan	7.327	4.165	6.305	1.425	0.930	1.233	2.874	1.321	1.813	9.334
4194	chr13	59921143	59926046	+	0	NA	Intergenic	Intergenic	-100447	NM_153538	214290	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	5.945	7.291	3.534	6.661	5.105	3.497	4.354	5.386	4.489	6.408	4.024	3.625	3.758	5.224	5.265	5.491	3.654	6.221	4.290	2.890	2.166	2.978	3.488	2.933	nan
7240	chr18	54196099	54197590	+	0	NA	Intergenic	Intergenic	-225451	NR_040338	77433	Mm.159919	NR_040338		Redrum	9430076G02Rik	Redrum, erythroid developmental long intergenic non-protein coding transcript	ncRNA	5.400	nan	0.544	nan	1.926	1.859	5.053	3.062	3.030	2.887	0.932	1.415	7.831	3.663	2.495	3.640	5.904	3.339	nan	2.039	2.679	nan	2.641	2.393	1.332
15532	chr9	112136583	112137950	+	0	NA	intron (NM_001177617, intron 10 of 14)	intron (NM_001177617, intron 10 of 14)	-18555	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.502	0.520	0.092	0.217	0.070	0.088	0.273	0.759	nan	nan	0.059	0.123	0.241	0.311	0.199	nan	0.219	nan	6.184	6.255	4.645	6.757	6.579	5.050	nan
8981	chr2	165476795	165483934	+	0	NA	Intergenic	Intergenic	-7167	NM_054055	114644	Mm.250738	NM_054055	ENSMUSG00000018459	Slc13a3	NaDC-3|NaDC3|SDCT2	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	protein-coding	3.220	1.900	0.660	1.798	1.751	0.795	4.961	8.483	2.636	2.236	8.127	3.805	5.391	3.433	3.610	5.157	3.826	4.183	nan	3.464	1.852	5.762	2.002	1.276	5.703
14582	chr8	109637930	109643632	+	0	NA	exon (NM_001286454, exon 16 of 33)	exon (NM_001286454, exon 16 of 33)	26264	NM_181544	244646	Mm.436810	NM_181544	ENSMUSG00000048827	Pkd1l3	-	polycystic kidney disease 1 like 3	protein-coding	6.415	1.125	0.978	6.018	5.009	3.891	5.464	9.253	4.909	5.803	4.708	4.210	7.145	8.557	6.491	7.403	7.482	6.379	1.698	2.888	3.487	nan	6.199	6.608	6.547
937	chr1	182213903	182215548	+	0	NA	Intergenic	RLTR12D|LTR|ERVK	-56627	NM_001166728	625823	Mm.479992	NM_001166728	ENSMUSG00000091013	Vmn1r1	EG625823|Gm6628	vomeronasal 1 receptor 1	protein-coding	2.158	1.771	0.305	2.897	1.506	1.058	2.325	1.756	2.007	1.906	0.415	0.560	3.536	3.631	3.498	5.929	1.753	4.523	1.291	0.779	0.778	2.319	0.624	0.949	3.521
14335	chr8	74665573	74666854	+	0	NA	Intergenic	L1_Rod|LINE|L1	-206961	NM_027837	71597	Mm.158735	NM_027837	ENSMUSG00000031621	Isx	9130012O13Rik|Pix-1	intestine specific homeobox	protein-coding	2.846	1.512	0.944	2.969	2.302	0.870	2.455	2.975	nan	1.543	1.300	0.668	2.044	3.906	3.280	3.070	3.037	3.144	0.824	0.863	0.478	nan	0.547	0.238	3.389
10504	chr4	124434717	124437544	+	0	NA	Intergenic	Intergenic	49829	NR_040774	78460	Mm.452060	NR_040774		1700057H15Rik	-	RIKEN cDNA 1700057H15 gene	ncRNA	3.318	1.773	1.325	3.331	4.392	3.083	2.536	3.082	2.765	2.909	1.196	1.468	3.364	4.657	nan	2.990	2.324	3.641	1.317	1.944	1.758	1.037	2.600	2.094	3.496
13658	chr7	121459831	121461598	+	0	NA	intron (NM_001081327, intron 1 of 1)	intron (NM_001081327, intron 1 of 1)	68418	NM_001081327	195646	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	6.293	11.368	4.135	5.501	2.215	0.548	2.440	5.998	3.847	4.982	5.323	3.847	3.486	4.394	4.272	4.414	2.727	4.666	3.690	1.800	0.885	4.699	1.043	1.021	4.167
3266	chr12	32297105	32299850	+	0	NA	Intergenic	Intergenic	-80312	NM_001162903	72123	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	10.425	0.657	0.885	2.537	1.633	1.888	3.986	1.737	3.645	3.737	0.503	0.653	6.984	3.387	3.448	3.727	7.406	5.135	0.903	0.894	0.899	0.526	0.561	0.762	6.891
3833	chr13	9011842	9018568	+	0	NA	Intergenic	B3|SINE|B2	-19193	NM_027000	69237	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	6.079	1.336	0.914	3.604	3.821	2.770	4.644	7.095	4.650	5.899	2.150	2.526	6.424	6.526	5.087	5.409	3.647	6.180	1.608	0.919	0.655	1.099	1.850	1.453	3.804
12484	chr6	93223008	93225268	+	0	NA	Intergenic	Intergenic	283556	NR_015530	330385	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	3.059	0.685	0.292	1.853	0.922	0.447	7.497	2.729	2.321	1.969	0.481	1.517	6.464	3.661	7.365	9.775	4.576	4.118	nan	nan	0.271	1.727	0.278	0.129	5.623
2311	chr11	62363360	62365642	+	0	NA	intron (NM_011308, intron 21 of 44)	intron (NM_011308, intron 21 of 44)	74014	NM_001252313	20185	Mm.271814	NM_011308	ENSMUSG00000018501	Ncor1	5730405M06Rik|A230020K14Rik|N-CoR|RIP13|Rxrip13|mKIAA1047	nuclear receptor co-repressor 1	protein-coding	16.147	17.468	6.057	15.656	10.732	4.958	11.762	12.132	9.981	13.645	12.941	5.291	13.496	16.476	13.529	13.076	12.067	12.649	10.785	6.487	4.018	10.907	7.646	5.943	14.831
3631	chr12	100573081	100575823	+	0	NA	exon (NM_001330702, exon 12 of 17)	exon (NM_001330702, exon 12 of 17)	-53630	NM_001033213	104718	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	3.055	1.319	0.559	3.202	1.376	1.096	1.181	1.187	2.028	2.362	8.467	2.661	1.818	2.025	1.843	3.095	1.835	nan	1.345	2.396	0.798	3.273	0.945	0.785	3.508
5002	chr15	3177239	3179531	+	0	NA	Intergenic	L1_Mus2|LINE|L1	-92382	NM_001042613	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	4.374	1.571	1.262	5.229	2.764	1.212	2.092	5.633	3.098	2.323	0.436	0.765	3.259	3.076	2.675	2.930	2.388	4.129	1.101	1.562	1.069	2.377	1.551	0.826	1.782
2556	chr11	84682861	84686049	+	0	NA	Intergenic	B2_Mm2|SINE|B2	35977	NR_046197	78471	Mm.47152	NR_046197	ENSMUSG00000085044	1700109G15Rik	-	RIKEN cDNA 1700109G15 gene	ncRNA	10.890	13.714	5.120	10.739	5.894	4.944	9.312	8.366	5.917	11.617	8.100	3.124	7.951	11.479	9.952	10.822	7.484	9.528	6.380	3.506	4.459	nan	4.679	5.867	nan
9132	chr3	8639487	8643632	+	0	NA	Intergenic	B4A|SINE|B4	25479	NM_010423	15213	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	1.632	0.705	0.409	2.846	0.735	0.711	0.630	0.792	1.768	1.305	0.548	0.464	0.416	0.995	1.044	1.293	0.652	2.356	2.189	1.725	1.004	4.888	1.492	1.769	1.553
6399	chr17	24779584	24793433	+	0	NA	Intergenic	L1_Mus2|LINE|L1	-17874	NM_029197	75178	Mm.52592	NM_029197	ENSMUSG00000024155	Meiob	4930528F23Rik|MLZ-675	meiosis specific with OB domains	protein-coding	5.549	1.486	0.597	7.000	2.610	1.616	5.753	3.090	4.075	5.961	2.129	1.756	4.368	6.980	4.747	nan	3.083	5.811	1.617	1.291	1.434	1.824	1.183	1.104	7.726
12661	chr6	120121968	120125049	+	0	NA	intron (NM_016718, intron 1 of 3)	L1_Mur2|LINE|L1	30128	NM_016718	29862	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	8.596	1.516	1.068	6.373	5.728	2.657	10.159	14.122	6.422	6.471	6.963	2.668	12.628	14.283	9.844	13.385	9.238	8.707	1.044	0.839	0.995	0.908	nan	0.483	5.995
9662	chr3	105737318	105739413	+	0	NA	intron (NM_145541, intron 5 of 7)	B3A|SINE|B2	32907	NM_001163356	109050	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	2.551	0.756	0.517	2.177	1.726	1.121	3.364	1.871	2.033	2.946	1.675	0.519	3.577	4.867	2.595	2.341	2.519	2.703	0.843	1.133	0.579	1.055	1.047	0.512	2.734
1786	chr10	118488166	118490152	+	0	NA	Intergenic	Intergenic	48113	NM_008337	15978	Mm.240327	NM_008337	ENSMUSG00000055170	Ifng	IFN-g|Ifg	interferon gamma	protein-coding	4.917	0.927	0.542	2.946	2.615	0.890	2.933	1.607	2.607	2.840	0.367	0.906	4.700	5.229	2.774	3.533	2.205	6.363	0.922	0.617	0.329	0.966	1.010	0.311	6.738
14183	chr8	42216733	42221100	+	0	NA	Intergenic	Intergenic	391649	NR_045497	69966	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA	4.823	0.758	0.519	3.858	2.583	1.539	4.350	9.872	3.786	4.967	1.997	2.380	5.796	4.930	6.007	7.930	7.064	4.530	0.580	0.651	0.878	1.566	0.275	0.306	nan
6057	chr16	37786427	37791271	+	0	NA	intron (NM_008047, intron 2 of 10)	intron (NM_008047, intron 2 of 10)	11794	NM_008047	14314	Mm.182434	NM_008047	ENSMUSG00000022816	Fstl1	AI316791|AW107808|Fstl|TSC-36	follistatin-like 1	protein-coding	2.913	1.514	0.524	3.946	1.412	0.929	2.069	1.800	2.958	4.478	1.927	0.843	3.737	5.582	4.286	6.605	1.575	2.888	2.146	1.201	0.663	2.837	0.547	0.431	5.361
8110	chr2	31297814	31299645	+	0	NA	Intergenic	Intergenic	52806	NM_019681	14299	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	4.315	1.849	0.612	1.618	0.503	0.253	2.651	8.068	nan	1.585	5.879	1.184	1.830	1.188	1.870	1.985	1.160	1.706	1.995	1.035	0.494	1.208	0.993	0.717	2.536
2320	chr11	62964490	62966357	+	0	NA	intron (NR_105772, intron 5 of 6)	intron (NR_105772, intron 5 of 6)	14230	NM_025496	66338	Mm.46166	NM_025496	ENSMUSG00000042200	Cdrt4	1700019I23Rik	CMT1A duplicated region transcript 4	protein-coding	4.497	1.861	0.745	3.695	3.857	1.691	1.742	0.973	2.565	3.513	0.565	0.658	2.904	4.448	1.247	2.218	1.552	4.292	nan	1.179	0.459	0.916	1.215	0.663	2.589
13671	chr7	123600206	123604221	+	0	NA	Intergenic	Lx2|LINE|L1	-101764	NM_001081329	210162	Mm.135397	NM_175435	ENSMUSG00000030757	Zkscan2	9430065N20Rik|AW493225|Zfp694	zinc finger with KRAB and SCAN domains 2	protein-coding	5.766	0.810	0.773	3.454	6.941	5.071	2.834	6.315	4.289	3.995	2.727	2.457	5.080	6.234	3.979	4.758	3.760	5.038	0.913	1.077	0.659	0.763	0.793	0.517	3.060
11367	chr5	77387954	77389291	+	0	NA	intron (NM_008048, intron 1 of 4)	intron (NM_008048, intron 1 of 4)	19423	NM_001159518	29817	Mm.233470	NM_008048	ENSMUSG00000036256	Igfbp7	AGM|Fstl2|Mac25	insulin-like growth factor binding protein 7	protein-coding	2.296	0.950	0.880	1.366	1.954	2.456	6.262	5.012	4.616	3.397	1.286	1.560	2.898	5.096	3.451	4.653	3.203	3.217	0.584	0.975	0.882	0.650	0.910	0.875	1.222
15331	chr9	77801863	77804890	+	0	NA	Intergenic	L1M5|LINE|L1	48841	NM_010295	14629	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	5.490	1.156	0.728	4.157	2.844	1.554	2.336	4.293	4.326	3.972	1.496	1.008	2.685	4.728	4.650	5.532	2.831	5.500	1.318	nan	0.836	1.487	0.932	1.111	5.555
11899	chr5	141091987	141094288	+	0	NA	Intergenic	Intergenic	-92541	NM_175362	108723	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	5.780	13.822	4.208	5.914	2.964	2.096	2.522	2.876	3.112	3.367	3.994	2.679	2.206	2.504	3.048	3.035	1.842	2.903	2.410	2.041	3.336	2.437	nan	1.545	4.876
2440	chr11	73999400	74002188	+	0	NA	Intergenic	L1Md_A|LINE|L1	-16188	NM_146710	258705	Mm.377645	NM_146710	ENSMUSG00000049041	Olfr398	MOR157-1	olfactory receptor 398	protein-coding	4.308	0.506	0.469	1.572	3.098	2.011	nan	5.104	4.591	4.744	1.274	1.389	7.486	6.661	nan	5.431	3.384	nan	0.551	0.478	nan	0.333	0.312	0.228	1.875
5257	chr15	63862765	63865951	+	0	NA	intron (NM_183194, intron 5 of 12)	intron (NM_183194, intron 5 of 12)	14200	NM_183194	270328	Mm.483471	NM_183194	ENSMUSG00000055827	Gsdmc3	9930109F21Rik	gasdermin C3	protein-coding	2.711	4.226	1.329	3.365	3.055	1.479	2.965	6.858	2.874	3.161	2.674	2.392	2.982	3.549	4.005	4.032	2.322	4.341	1.897	1.276	1.092	2.113	0.991	0.971	3.601
6924	chr17	84909273	84912321	+	0	NA	Intergenic	Intergenic	-45944	NM_001159497	19043	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	5.433	3.774	1.482	5.460	4.195	2.236	9.779	3.326	3.927	7.696	0.897	2.993	6.727	10.100	8.360	9.972	6.263	6.746	2.779	2.008	1.932	3.209	4.017	3.450	9.988
7789	chr19	43060047	43061500	+	0	NA	intron (NM_001081257, intron 3 of 11)	intron (NM_001081257, intron 3 of 11)	-280797	NM_019424	192236	Mm.218381	NM_019424	ENSMUSG00000025188	Hps1	6030422N11Rik|BB405864|Gm21361|Hps|ep	Hermansky-Pudlak syndrome 1	protein-coding	2.779	0.529	0.831	3.437	0.993	0.550	1.023	nan	0.853	1.535	0.570	0.481	0.581	1.747	0.905	1.145	1.505	1.921	0.373	0.720	0.358	0.454	0.297	0.413	1.127
14160	chr8	37217286	37219448	+	0	NA	Intergenic	Intergenic	-194129	NR_126063	414128	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	3.656	1.127	0.551	1.340	0.869	0.393	3.248	5.555	3.041	3.005	6.430	1.443	4.311	4.427	3.974	3.579	2.376	3.222	2.198	1.292	1.012	2.896	1.173	0.966	4.925
13732	chr7	132848998	132852043	+	0	NA	intron (NM_028095, intron 3 of 5)	B2_Mm2|SINE|B2	2127	NM_028095	72096	Mm.28631	NM_028095	ENSMUSG00000030960	Mettl10	2010208K18Rik	methyltransferase like 10	protein-coding	9.428	7.788	3.954	8.375	5.731	3.665	8.077	11.573	4.716	7.310	5.847	4.221	7.017	9.481	7.538	8.276	6.739	8.007	3.755	3.699	4.353	4.213	4.233	4.540	12.912
13044	chr7	28140434	28143693	+	0	NA	intron (NM_001164655, intron 5 of 19)	intron (NM_001164655, intron 5 of 19)	12597	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	8.609	12.649	5.042	6.878	3.642	2.388	8.940	7.955	5.302	6.288	8.781	4.055	9.775	10.273	9.478	10.043	6.805	8.248	5.905	2.050	2.557	3.131	2.498	2.883	15.718
93	chr1	36501235	36503331	+	0	NA	intron (NM_033570, intron 5 of 6)	(CA)n|Simple_repeat|Simple_repeat	-9584	NM_001331209	94218	Mm.256323	NM_053186	ENSMUSG00000001138	Cnnm3	Acdp3|Clp3|mACDP3	cyclin M3	protein-coding	6.545	4.541	2.281	4.005	5.015	2.521	5.082	4.824	3.075	4.350	2.997	2.073	4.719	6.058	4.072	6.942	5.972	4.117	3.470	3.013	2.742	2.717	4.286	4.485	5.715
11385	chr5	87158503	87161624	+	0	NA	Intergenic	L1_Mus3|LINE|L1	-19723	NM_009467	22238	Mm.291575	NM_009467	ENSMUSG00000054630	Ugt2b5	AI118071|M-1|Udpgt-3|Udpgt2b5|Ugt2b17	UDP glucuronosyltransferase 2 family, polypeptide B5	protein-coding	0.368	0.533	0.481	0.311	0.183	0.118	0.502	0.878	0.741	0.388	5.581	3.995	0.400	0.376	0.420	0.426	0.684	0.599	0.880	0.798	0.662	0.907	0.621	0.399	0.329
5735	chr15	102551675	102553458	+	0	NA	intron (NM_001310066, intron 5 of 11)	B2_Mm2|SINE|B2	-27945	NM_018787	54615	Mm.445915	NM_018787	ENSMUSG00000023052	Npff	-	neuropeptide FF-amide peptide precursor	protein-coding	7.631	4.204	2.074	4.990	3.825	1.920	5.488	7.978	4.168	4.157	3.904	1.612	6.939	5.944	6.198	6.807	6.542	5.307	2.165	1.853	1.089	2.519	1.912	2.059	6.981
3055	chr11	118053413	118059941	+	0	NA	intron (NM_001167746, intron 57 of 80)	intron (NM_001167746, intron 57 of 80)	54407	NR_105898	102466768		NR_105898	ENSMUSG00000098958	Mir6933	Gm27856|mmu-mir-6933	microRNA 6933	ncRNA	5.174	5.647	2.829	4.559	3.924	2.369	nan	4.015	3.602	4.564	2.275	1.585	3.502	5.971	4.458	5.172	3.408	5.777	3.339	nan	1.716	3.344	2.799	1.851	5.387
14803	chr8	129060309	129064824	+	0	NA	intron (NM_001197041, intron 2 of 5)	intron (NM_001197041, intron 2 of 5)	2926	NM_029061	74703	Mm.196017	NM_029061	ENSMUSG00000025808	Ccdc7a	4930517G15Rik|4930540C21Rik|Biot2|Ccdc7	coiled-coil domain containing 7A	protein-coding	5.233	nan	0.799	3.520	5.440	3.648	5.683	8.412	3.327	4.076	4.132	3.646	4.648	7.778	nan	6.397	3.055	4.928	3.034	1.757	1.672	nan	3.549	nan	4.855
6807	chr17	67103069	67106823	+	0	NA	intron (NM_008984, intron 2 of 30)	intron (NM_008984, intron 2 of 30)	-78711	NR_049205	100885844		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	4.467	0.477	0.243	1.287	1.940	1.292	3.913	3.886	nan	1.377	0.591	0.469	3.898	6.182	6.259	5.615	5.288	3.861	1.008	0.718	0.735	1.012	1.695	1.562	4.537
7839	chr19	46835438	46837180	+	0	NA	intron (NM_033569, intron 1 of 7)	Lx9|LINE|L1	74700	NM_001102471	94219	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	4.674	6.416	1.686	8.693	1.677	0.919	3.278	5.400	3.582	8.932	2.479	2.188	3.344	5.363	7.546	8.589	3.388	7.204	2.427	0.684	1.881	5.059	2.187	3.914	13.671
10977	chr4	154232919	154238992	+	0	NA	intron (NM_001162977, intron 4 of 36)	intron (NM_001162977, intron 4 of 36)	63940	NM_001112744	230972	Mm.38481	NM_001112744	ENSMUSG00000029032	Arhgef16	-	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding	1.932	1.040	0.360	1.855	0.970	0.400	0.962	4.470	2.594	2.862	1.159	1.558	0.837	1.918	1.722	3.051	1.428	2.349	0.926	0.458	0.418	1.467	1.125	0.788	4.972
11300	chr5	66462785	66477144	+	0	NA	intron (NM_001310626, intron 3 of 15)	intron (NM_001310626, intron 3 of 15)	-132299	NM_001201416	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	7.311	4.062	2.161	5.123	5.580	3.072	7.726	7.420	6.506	7.161	5.376	3.714	7.297	10.086	9.104	9.039	6.242	7.533	1.270	1.795	1.312	nan	1.363	1.053	6.613
14343	chr8	74998254	75000579	+	0	NA	intron (NM_178017, intron 2 of 10)	intron (NM_178017, intron 2 of 10)	5766	NM_178017	70823	Mm.261739	NM_178017	ENSMUSG00000034518	Hmgxb4	4733401K04Rik|AI316803|Hmgb2l1	HMG box domain containing 4	protein-coding	7.573	nan	3.503	7.493	3.373	2.334	5.889	7.657	nan	5.759	5.740	2.622	6.699	7.421	7.955	9.661	6.291	7.066	5.157	2.516	3.253	nan	3.261	3.334	11.768
11674	chr5	122741057	122746299	+	0	NA	intron (NM_145358, intron 13 of 15)	intron (NM_145358, intron 13 of 15)	35732	NM_001199676	207565	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	2.496	10.175	5.088	2.898	1.439	0.523	2.109	3.056	2.381	2.602	1.448	1.169	2.435	3.590	3.619	3.713	2.225	3.437	6.389	nan	1.571	6.473	nan	2.754	2.565
10972	chr4	153848834	153858817	+	0	NA	Intergenic	Intergenic	96651	NR_040670	407793	Mm.260950	NR_040670		BC039966	-	cDNA sequence BC039966	ncRNA	3.003	0.439	0.169	4.701	2.198	0.970	3.954	4.506	3.249	4.347	0.847	0.790	5.119	5.638	5.158	6.718	3.012	5.463	0.953	0.416	0.258	0.766	0.597	0.401	7.244
2429	chr11	72616866	72618580	+	0	NA	intron (NM_025985, intron 1 of 5)	L1M3|LINE|L1	10462	NM_025985	67128	Mm.458052	NM_025985	ENSMUSG00000020794	Ube2g1	2700059C12Rik|AI256795|AU014992|AW552068|D130023C12Rik	ubiquitin-conjugating enzyme E2G 1	protein-coding	3.270	1.210	0.562	2.874	1.721	1.508	2.646	1.956	3.759	2.377	1.648	1.581	2.218	2.287	2.196	4.728	2.625	5.172	0.945	0.769	0.987	1.295	nan	0.552	2.795
12296	chr6	70672942	70683064	+	0	NA	Intergenic	Intergenic	114172	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.478	9.987	5.556	1.073	0.376	0.245	0.469	0.500	0.555	0.591	0.321	0.249	0.249	0.272	0.540	0.756	0.892	0.672	0.808	1.230	0.774	0.316	0.532	0.544	0.367
8979	chr2	165456552	165461096	+	0	NA	intron (NM_054055, intron 1 of 12)	MIRc|SINE|MIR	14373	NM_054055	114644	Mm.250738	NM_054055	ENSMUSG00000018459	Slc13a3	NaDC-3|NaDC3|SDCT2	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	protein-coding	5.208	0.659	0.202	3.240	2.178	1.218	4.974	9.139	3.233	3.041	5.294	2.412	6.394	4.425	5.015	8.437	6.288	6.107	nan	1.332	0.934	1.828	0.912	0.698	10.782
2790	chr11	100791614	100793800	+	0	NA	intron (NM_001113563, intron 12 of 18)	RMER20B|LTR|ERVK	-21750	NM_031871	80860	Mm.37308	NM_031871	ENSMUSG00000017747	Ghdc	D11Lgp1e	GH3 domain containing	protein-coding	4.908	7.465	4.845	3.176	5.660	2.784	3.145	3.961	3.452	3.792	3.308	2.460	2.764	4.761	3.477	4.492	4.437	3.927	5.688	4.988	3.340	4.204	5.944	4.291	2.133
13137	chr7	36339818	36344188	+	0	NA	Intergenic	Intergenic	-356115	NM_172298	243931	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	3.960	5.924	1.974	4.630	1.744	1.669	7.749	7.614	3.781	6.569	7.356	3.196	7.874	7.013	6.016	4.949	3.836	4.994	2.974	2.312	2.154	2.852	2.150	3.046	8.119
3876	chr13	22132311	22134851	+	0	NA	Intergenic	RMER16-int|LTR|ERVK	-30916	NM_145844	252906	Mm.377265	NM_145844	ENSMUSG00000099611	Vmn1r189	V1rh2	vomeronasal 1 receptor 189	protein-coding	3.709	8.196	2.860	3.130	1.585	1.447	0.867	2.459	3.076	2.588	3.139	2.545	2.167	nan	4.114	3.922	nan	5.411	3.415	1.186	1.988	2.111	1.248	1.311	nan
3688	chr12	106090965	106095023	+	0	NA	Intergenic	Intergenic	82731	NM_001029843	22367	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	3.270	0.501	0.484	nan	1.931	1.182	1.967	nan	nan	nan	1.161	0.976	2.002	nan	1.940	1.731	2.483	1.751	1.968	1.729	1.013	3.685	3.167	2.265	3.116
4576	chr14	31679378	31684016	+	0	NA	Intergenic	Intergenic	40640	NM_025295	26363	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	5.014	2.345	0.747	6.677	2.430	1.207	3.774	8.513	3.935	5.722	1.332	0.923	5.340	7.193	6.053	7.221	nan	5.449	0.763	0.620	0.272	nan	0.399	0.195	7.781
14784	chr8	127444672	127451612	+	0	NA	intron (NM_001309391, intron 20 of 24)	B1_Mur4|SINE|Alu	148490	NM_001013580	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	3.380	nan	0.523	4.595	6.405	5.310	nan	3.521	3.789	4.979	2.726	2.001	4.890	7.245	6.099	6.103	3.922	4.946	nan	1.338	0.911	nan	1.062	nan	9.952
8426	chr2	90413778	90425456	+	0	NA	Intergenic	ERVB7_2B-LTR_MM|LTR|ERVK	18977	NM_146263	258330	Mm.330392	NM_146263	ENSMUSG00000082980	Olfr1274-ps	GA_x5J8B7W2BV0-3116-4045|MOR228-4|MOR228-5|Olfr1274	olfactory receptor 1274, pseudogene	protein-coding	7.247	2.940	1.269	5.236	3.454	2.082	4.121	8.236	4.211	5.835	5.257	3.684	5.455	5.936	4.986	6.118	5.252	7.098	5.234	2.217	1.955	3.644	3.055	2.795	8.272
7388	chr18	74937033	74944569	+	0	NA	3' UTR (NM_010720, exon 10 of 10)	3' UTR (NM_010720, exon 10 of 10)	20462	NM_010720	16891	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	8.526	nan	1.585	6.164	4.911	2.870	6.383	9.221	4.216	5.818	5.031	2.628	8.534	8.648	6.155	7.677	5.817	6.677	4.436	nan	2.070	3.307	3.705	3.002	8.897
1328	chr10	59404409	59417123	+	0	NA	intron (NM_023530, intron 1 of 3)	intron (NM_023530, intron 1 of 3)	7081	NM_023530	69836	Mm.30268	NM_023530	ENSMUSG00000009646	Pla2g12b	2010002E04Rik|Fksg71|Pla2g13|hlb218	phospholipase A2, group XIIB	protein-coding	9.288	7.023	2.498	8.153	5.626	4.726	6.189	7.418	5.742	8.161	6.001	4.233	4.988	9.606	7.252	7.520	5.712	7.404	nan	3.426	4.603	6.926	5.234	5.334	nan
3097	chr11	119907496	119909304	+	0	NA	intron (NR_039557, intron 2 of 2)	intron (NR_039557, intron 2 of 2)	-5410	NM_001085498	208092	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	0.929	nan	0.168	3.982	1.108	0.681	nan	nan	0.589	nan	0.463	0.508	0.501	0.752	0.925	1.197	0.608	nan	6.714	5.549	5.383	9.357	7.759	7.020	1.322
3767	chr12	113965674	113968139	+	0	NA	Intergenic	Intergenic	422998	NM_174885	238406	Mm.188683	NM_174885	ENSMUSG00000043945	Adam6a	Adam6|tMDCIV	a disintegrin and metallopeptidase domain 6A	protein-coding	4.645	0.875	0.528	2.690	5.662	3.087	3.706	3.851	2.880	3.482	3.360	2.030	3.348	7.577	3.919	4.090	3.107	5.004	1.164	1.340	1.386	1.166	1.157	0.964	7.323
409	chr1	89761049	89762664	+	0	NA	intron (NM_001037136, intron 11 of 16)	intron (NM_001037136, intron 11 of 16)	-77964	NR_015540	74403	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	3.083	4.149	5.164	1.951	2.599	2.058	1.415	1.174	2.153	1.927	1.036	0.904	1.326	1.654	1.197	2.115	3.350	1.976	0.718	1.622	1.656	nan	0.738	1.199	1.465
4049	chr13	44087984	44091924	+	0	NA	Intergenic	Intergenic	-31213	NR_045285	328235	Mm.188356	NR_045285	ENSMUSG00000089815	Gm5083	A730030A06	predicted gene 5083	ncRNA	6.804	0.646	0.520	nan	6.307	4.364	6.334	5.083	4.102	6.926	1.011	0.817	5.324	7.372	4.092	3.940	4.098	nan	1.137	nan	1.253	1.085	1.554	1.251	nan
5353	chr15	76055444	76063806	+	0	NA	exon (NM_134089, exon 19 of 38)	exon (NM_134089, exon 19 of 38)	5263	NR_105917	102466772		NR_105917	ENSMUSG00000098451	Mir6952	Gm27948|mmu-mir-6952	microRNA 6952	ncRNA	3.677	3.747	1.263	4.211	2.083	1.059	nan	5.942	2.030	nan	nan	1.500	4.589	5.303	4.963	5.318	nan	4.075	2.289	1.589	1.419	nan	2.074	1.564	6.116
7858	chr19	47975190	47976868	+	0	NA	intron (NM_001163267, intron 11 of 17)	intron (NM_001163267, intron 11 of 17)	38317	NM_001163267	381229	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	1.616	1.444	0.377	nan	0.864	0.731	1.255	1.045	1.205	1.245	4.594	1.042	0.788	3.317	1.783	1.813	0.552	2.429	0.540	0.381	0.292	0.864	0.262	0.027	2.705
14385	chr8	84290937	84294011	+	0	NA	Intergenic	B4A|SINE|B4	-22072	NM_026350	67736	Mm.30095	NM_026350	ENSMUSG00000004994	Ccdc130	4930527D15Rik|C77430	coiled-coil domain containing 130	protein-coding	8.962	6.790	2.733	4.805	4.537	3.009	5.307	4.237	5.692	6.947	3.102	3.182	5.641	5.968	8.343	7.603	7.121	7.203	nan	1.587	1.819	2.223	1.100	0.856	8.653
7137	chr18	35904425	35908772	+	0	NA	Intergenic	Intergenic	-58232	NM_028707	74002	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	5.470	5.332	2.673	3.183	3.417	1.980	2.203	2.996	2.984	2.552	3.172	2.209	2.744	nan	2.563	2.656	3.108	3.087	5.520	5.152	4.286	4.659	8.896	8.275	2.986
1958	chr11	7055984	7060878	+	0	NA	Intergenic	Intergenic	-5058	NM_009622	432530	Mm.259733	NM_009622	ENSMUSG00000020431	Adcy1	AC1|D11Bwg1392e|I-AC|brl|mKIAA4070	adenylate cyclase 1	protein-coding	2.269	0.629	0.319	0.484	0.279	0.126	3.624	4.873	0.660	0.814	0.465	0.358	2.705	2.159	3.533	3.628	3.338	1.704	1.377	nan	0.261	1.071	0.966	0.837	1.209
812	chr1	164116453	164119783	+	0	NA	intron (NM_011347, intron 1 of 15)	intron (NM_011347, intron 1 of 15)	2854	NM_011347	20344	Mm.3337	NM_011347	ENSMUSG00000026580	Selp	CD62P|GMP-140|Grmp|LECAM3|PADGEM	selectin, platelet	protein-coding	1.946	4.123	2.013	nan	1.085	0.331	0.916	0.831	nan	1.375	7.591	1.751	nan	1.372	nan	1.488	1.052	1.382	0.901	0.885	0.294	nan	nan	0.312	nan
8275	chr2	59892305	59895609	+	0	NA	Intergenic	Intergenic	-11351	NM_028118	72137	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	9.319	0.820	0.711	4.713	6.279	3.829	4.919	7.530	5.813	8.085	1.559	1.543	7.536	10.339	5.704	7.085	8.526	6.478	3.468	2.795	2.515	2.094	3.860	2.969	6.269
585	chr1	132407722	132410327	+	0	NA	Intergenic	ORR1D1|LTR|ERVL-MaLR	-8429	NM_172516	213452	Mm.257120	NM_172516	ENSMUSG00000042046	Dstyk	A930019K20Rik|C430014H23Rik|C820013G01|Ripk5	dual serine/threonine and tyrosine protein kinase	protein-coding	2.460	1.493	0.838	1.747	1.162	0.913	1.818	2.130	2.364	2.239	0.926	0.550	2.706	2.987	2.474	4.852	2.928	nan	nan	0.685	0.627	0.720	0.532	0.522	2.274
15660	chrX	7296848	7304417	+	0	NA	intron (NM_001243762, intron 2 of 13)	intron (NM_001243762, intron 2 of 13)	18726	NM_001243762	12728	Mm.486257	NM_016691	ENSMUSG00000004317	Clcn5	5430408K11Rik|ClC-5|Clc4-1|Clc5|Clcn4-1|D930009B12Rik|DXImx42e|Sfc13|T25545	chloride channel, voltage-sensitive 5	protein-coding	5.635	1.719	0.969	3.388	4.798	3.888	5.274	4.158	3.069	4.146	1.721	1.673	3.763	7.365	3.655	5.061	3.654	4.479	1.157	1.716	1.454	1.161	1.758	1.087	5.201
9569	chr3	96651598	96653165	+	0	NA	intron (NM_001302471, intron 12 of 29)	intron (NM_001302471, intron 12 of 29)	6797	NM_001302471	213119	Mm.32741	NM_001081053	ENSMUSG00000090210	Itga10	A630048L14	integrin, alpha 10	protein-coding	2.874	2.365	1.247	0.721	1.072	0.683	1.290	0.575	0.809	2.007	nan	0.322	1.695	3.396	2.138	nan	1.526	0.973	0.636	0.432	0.189	0.294	0.400	0.598	3.842
3711	chr12	109882344	109890457	+	0	NA	Intergenic	ORR1D1-int|LTR|ERVL-MaLR	138522	NR_037233	100499517		NR_037233	ENSMUSG00000093351	Mir3072	mir-3072|mmu-mir-3072	microRNA 3072	ncRNA	2.403	8.367	3.702	nan	0.598	0.349	0.792	nan	nan	nan	0.465	0.394	0.851	nan	1.241	1.616	1.392	1.472	1.543	1.088	0.612	1.806	0.517	0.352	nan
8970	chr2	164884916	164887163	+	0	NA	exon (NM_146129, exon 7 of 17)	exon (NM_146129, exon 7 of 17)	6671	NM_146129	228866	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	0.907	6.212	6.632	1.439	1.036	0.943	0.315	0.359	0.761	0.362	0.112	0.470	0.306	nan	0.580	0.672	0.635	nan	nan	1.007	1.610	0.492	0.551	1.004	nan
4633	chr14	46976594	46978051	+	0	NA	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-24018	NM_001163433	74480	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	1.562	0.385	0.614	0.991	1.429	0.994	2.811	4.152	1.666	2.220	0.678	0.944	2.062	4.281	3.990	3.625	1.402	2.565	0.276	0.618	0.349	0.365	0.438	0.158	1.685
8837	chr2	153566511	153568188	+	0	NA	Intergenic	Intergenic	-37378	NM_001134300	329540	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	nan	10.780	2.741	8.346	6.440	4.779	7.439	8.091	nan	8.477	5.008	3.502	6.913	7.480	7.589	10.797	7.874	8.074	nan	2.658	4.466	5.616	4.220	4.804	13.393
732	chr1	153082608	153085040	+	0	NA	intron (NM_175460, intron 4 of 10)	intron (NM_175460, intron 4 of 10)	102623	NM_008485	16782	Mm.329272	NM_008485	ENSMUSG00000026479	Lamc2	AA589349	laminin, gamma 2	protein-coding	6.828	1.410	0.353	3.967	2.630	1.376	5.911	4.184	4.589	5.308	5.952	1.467	9.130	5.806	5.180	5.851	5.785	6.318	nan	0.893	1.381	4.638	nan	0.510	3.888
5480	chr15	81751089	81752135	+	0	NA	intron (NM_001081016, intron 1 of 22)	ORR1A0-int|LTR|ERVL-MaLR	6764	NM_001081016	20286	Mm.432075	NM_001081016	ENSMUSG00000022390	Zc3h7b	Gm627|Scrg3|Zc2h7b|mKIAA1031	zinc finger CCCH type containing 7B	protein-coding	2.778	1.258	0.453	2.071	0.546	0.257	3.389	5.570	2.081	nan	nan	0.312	4.039	4.547	3.226	2.701	1.472	3.168	1.151	0.800	0.412	3.747	0.575	0.442	7.590
6906	chr17	84425155	84427052	+	0	NA	intron (NM_183021, intron 20 of 37)	(CA)n|Simple_repeat|Simple_repeat	40105	NM_183021	240174	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	3.563	2.661	1.142	1.486	1.664	0.569	9.385	5.294	2.944	3.904	8.069	3.099	5.016	5.510	6.622	7.832	6.172	3.342	3.220	3.347	2.333	5.639	2.714	1.571	9.762
8023	chr2	25388311	25391989	+	0	NA	Intergenic	Intergenic	-5724	NM_009849	12496	Mm.482100	NM_009849	ENSMUSG00000015085	Entpd2	Cd39l1|NTPDase2	ectonucleoside triphosphate diphosphohydrolase 2	protein-coding	4.945	11.123	6.753	7.480	6.443	6.227	4.344	4.373	5.333	4.459	2.583	3.894	5.162	5.507	4.435	4.108	3.722	7.033	1.922	2.626	2.993	1.596	1.783	1.195	4.257
11010	chr5	4949181	4951502	+	0	NA	intron (NM_011074, intron 10 of 14)	intron (NM_011074, intron 10 of 14)	-192125	NM_021457	14362	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	5.358	0.599	0.611	1.990	1.941	1.307	5.928	3.221	2.231	2.426	1.282	0.607	3.819	4.784	4.436	4.694	3.928	3.689	0.601	0.930	0.389	0.651	0.752	0.413	3.741
9623	chr3	102757538	102760379	+	0	NA	intron (NM_027533, intron 4 of 7)	intron (NM_027533, intron 4 of 7)	-23541	NR_040588	78491	Mm.243766	NR_040588	ENSMUSG00000086745	Tspan2os	2410057H14Rik	tetraspanin 2, opposite strand	ncRNA	2.387	0.536	0.535	1.640	1.934	1.388	4.308	1.121	1.314	1.043	nan	0.667	4.791	4.716	2.559	nan	3.648	2.965	0.602	0.632	0.252	0.458	0.550	0.464	1.880
4653	chr14	48268095	48270293	+	0	NA	Intergenic	Intergenic	70478	NR_003630	624367	Mm.445185	NM_001037921	ENSMUSG00000063885	Gm6498	EG624367	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	7.159	13.545	5.241	7.516	2.000	1.722	5.582	7.717	3.855	9.239	4.815	3.083	4.889	6.589	7.875	9.004	3.182	6.337	2.641	1.739	2.038	2.854	1.747	2.394	13.408
11737	chr5	125650824	125662387	+	0	NA	intron (NM_001190352, intron 3 of 8)	(TTTTA)n|Simple_repeat|Simple_repeat	124187	NM_001190352	208151	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding	4.514	4.178	1.788	5.224	1.982	0.784	5.213	3.970	3.368	nan	2.956	2.115	3.802	5.560	nan	5.336	nan	4.973	nan	2.475	2.333	4.643	nan	4.206	nan
6831	chr17	71558944	71566396	+	0	NA	intron (NM_001142631, intron 4 of 5)	intron (NM_001142631, intron 4 of 5)	10609	NM_029254	70891	Mm.477599	NM_029254	ENSMUSG00000052525	Spdya	4921517J08Rik|4930548B21Rik|GS4|MLZ-465|Spdy1	speedy/RINGO cell cycle regulator family, member A	protein-coding	1.938	9.945	5.647	2.393	3.352	1.861	1.205	1.077	nan	2.012	1.009	0.709	0.974	nan	1.759	2.165	1.617	2.167	0.964	1.220	0.732	0.872	0.601	0.559	1.650
6961	chr17	88839254	88843063	+	0	NA	Intergenic	Intergenic	-49182	NM_013582	16867	Mm.1644	NM_013582	ENSMUSG00000024107	Lhcgr	Gpcr19-rs1|LH-R|Lhr	luteinizing hormone/choriogonadotropin receptor	protein-coding	7.212	12.586	5.185	9.142	3.535	3.046	7.191	6.518	nan	11.070	4.527	3.675	5.692	6.928	7.693	9.556	5.981	7.736	4.202	2.757	3.381	4.837	2.847	4.367	12.164
15006	chr9	43998656	44000584	+	0	NA	Intergenic	MYSERV6-int|LTR|ERVK	-43764	NM_009382	21838	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding	3.598	0.989	0.888	2.742	2.945	2.816	1.878	4.494	2.772	2.764	1.555	0.853	2.103	4.085	nan	nan	2.279	2.443	0.802	1.071	1.525	nan	0.693	0.687	2.093
2381	chr11	69704468	69705584	+	0	NA	Intergenic	L1MC4|LINE|L1	-8928	NM_001159503	619441	Mm.8983	NM_001034097	ENSMUSG00000018752	Tnfsfm13	Tnfsf12-Tnfsf13|Tnfsf12Tnfsf13|Tnfsf12tnfsf13|Twe-pril	tumor necrosis factor (ligand) superfamily, membrane-bound member 13	protein-coding	2.543	1.824	1.112	1.675	1.831	0.545	2.430	1.492	1.564	2.316	3.733	1.535	1.415	3.782	2.740	1.702	1.657	2.041	1.030	1.485	0.684	0.865	nan	0.417	3.074
1416	chr10	70805715	70809096	+	0	NA	Intergenic	Intergenic	-151442	NR_045292	319646	Mm.483039	NR_045291	ENSMUSG00000037747	D630013N20Rik	-	RIKEN cDNA D630013N20 gene	ncRNA	5.365	4.941	1.989	6.013	2.387	1.627	2.253	3.929	4.347	5.291	3.670	3.117	4.228	4.497	4.406	5.236	3.661	5.297	5.192	1.904	2.056	3.810	4.362	3.946	6.220
2771	chr11	100180495	100182596	+	0	NA	Intergenic	Intergenic	11701	NM_201255	107656	Mm.445335	NM_201255	ENSMUSG00000051617	Krt9	EPPK|K9|Krt1-9	keratin 9	protein-coding	7.009	8.832	3.153	7.089	5.848	4.920	6.618	5.931	3.928	9.344	6.245	2.334	5.637	6.717	6.250	8.596	6.094	6.883	4.996	nan	3.651	5.553	nan	nan	8.518
14295	chr8	72874703	72878713	+	0	NA	intron (NM_001317391, intron 10 of 15)	intron (NM_001317391, intron 10 of 15)	115049	NM_007975	14065	Mm.12948	NM_007975	ENSMUSG00000050147	F2rl3	PAR4	coagulation factor II (thrombin) receptor-like 3	protein-coding	6.137	7.991	2.196	5.711	4.598	3.372	5.020	6.595	3.464	6.753	3.764	2.368	5.829	6.475	5.256	7.018	5.087	5.363	nan	3.001	3.490	6.599	3.980	3.807	10.418
1658	chr10	95726451	95728788	+	0	NA	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-163452	NM_027722	71207	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	9.555	1.859	1.999	2.817	6.628	3.308	5.527	2.620	3.921	5.678	2.654	1.165	3.567	4.992	4.304	4.929	6.410	3.244	nan	2.530	1.820	nan	2.495	1.974	5.752
12185	chr6	39267876	39270522	+	0	NA	Intergenic	Intergenic	-62426	NM_001033430	338523	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|ENSMUSG00000073143|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	3.329	1.367	1.086	2.948	2.155	2.581	4.881	4.262	2.028	3.068	3.579	2.156	3.394	5.800	4.691	6.393	4.432	4.048	nan	1.438	1.668	nan	nan	1.849	4.841
15767	chrX	93158438	93159915	+	0	NA	Intergenic	Intergenic	2955	NR_103799	100042663	Mm.291732	NR_103799	ENSMUSG00000095110	1700003E24Rik	ENSMUSG00000067646|Gm14779|OTTMUSG00000017966	Gm5941 pseudogene	pseudo	1.391	0.393	0.235	1.216	4.037	2.663	1.769	3.731	2.518	4.040	2.072	2.151	3.558	3.741	3.433	3.353	1.578	2.464	0.810	0.179	0.498	0.602	0.178	0.324	2.337
12776	chr6	134645127	134647753	+	0	NA	intron (NM_026371, intron 2 of 3)	intron (NM_026371, intron 2 of 3)	5500	NM_026371	67774	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	3.075	1.075	0.363	3.532	1.594	0.512	3.174	3.859	3.772	4.595	3.309	0.984	6.329	6.421	6.618	6.431	2.941	5.180	3.052	1.141	0.377	3.626	1.137	0.831	4.315
11849	chr5	137926239	137927391	+	0	NA	Intergenic	Intergenic	-5196	NM_007819	13113	Mm.289886	NM_007819	ENSMUSG00000029727	Cyp3a13	IIIAm2	cytochrome P450, family 3, subfamily a, polypeptide 13	protein-coding	0.316	0.381		0.911	0.963	0.687	1.793	3.108	1.547	4.595	0.582	0.862	1.482	4.004	2.026	1.326	0.679	1.187	0.427	0.050	0.213	0.459	nan	0.568	2.301
11602	chr5	115605320	115609074	+	0	NA	intron (NM_172719, intron 38 of 57)	B1_Mus1|SINE|Alu	24619	NR_027810	66123	Mm.133063	NM_021417	ENSMUSG00000107121	1110006O24Rik	-	RIKEN cDNA 1110006O24 gene	ncRNA	6.974	10.613	2.577	8.971	3.293	1.912	7.050	5.711	4.608	7.957	4.619	2.734	5.082	7.503	7.634	8.784	4.106	7.093	3.832	nan	3.109	4.018	nan	2.311	10.198
1635	chr10	94653383	94657273	+	0	NA	Intergenic	L1MC5a|LINE|L1	33285	NR_015524	67723	Mm.116284	NR_015524	ENSMUSG00000097164	Cep83os	4932415G12Rik|Ccdc41os1	centrosomal protein 83, opposite strand	ncRNA	5.721	2.570	1.291	5.821	3.088	1.559	1.687	1.669	2.623	2.573	nan	1.470	0.962	2.046	1.915	2.422	2.064	4.278	nan	2.167	1.201	nan	1.116	1.273	2.814
1237	chr10	41271320	41273085	+	0	NA	intron (NM_133999, intron 5 of 22)	intron (NM_133999, intron 5 of 22)	31039	NM_133999	103199	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	7.196	2.815	1.455	2.588	1.783	0.869	4.647	9.673	2.930	2.492	3.429	2.149	7.503	5.203	4.833	4.854	4.912	2.885	6.977	7.255	4.258	8.532	9.053	6.512	3.234
6937	chr17	86921324	86927719	+	0	NA	Intergenic	Intergenic	7173	NM_030104	78469	Mm.67234	NM_030104	ENSMUSG00000037689	Tmem247	1700090G07Rik	transmembrane protein 247	protein-coding	3.842	3.248	1.260	5.217	2.568	1.232	2.182	2.508	5.871	8.342	2.035	0.905	5.209	7.631	4.487	6.096	4.856	6.088	0.795	0.670	0.316	0.760	0.617	0.359	4.595
5315	chr15	74338280	74341382	+	0	NA	Intergenic	Intergenic	147815	NR_144499	102634630		NR_144499		Gm32168	-	predicted gene, 32168	ncRNA	nan	nan	0.253	nan	0.062	0.040	nan	0.433	0.147	nan	nan		0.140	nan	0.268	0.503	nan	0.366	0.969	2.157	1.165	4.465	0.599	0.270	0.619
15809	chrX	132784898	132786881	+	0	NA	Intergenic	Intergenic	903104	NM_001105245	279653	Mm.39738	NM_001105245	ENSMUSG00000051323	Pcdh19	B530002L05Rik|Gm717|mKIAA1313	protocadherin 19	protein-coding	4.729	0.369	0.120	1.778	2.075	1.339	4.765	2.712	2.486	5.219	1.236	0.861	4.774	4.115	2.409	3.475	4.196	3.572	0.862	1.547	0.697	0.379	1.319	0.571	3.875
5691	chr15	101074284	101078457	+	0	NA	Intergenic	Intergenic	-21971	NM_001214911	668225	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	4.991	4.543	2.007	5.257	4.095	3.729	5.841	7.714	3.697	3.815	2.705	2.590	5.532	6.126	6.379	nan	5.170	5.554	2.284	1.791	1.803	3.907	1.981	1.361	6.187
2490	chr11	77253804	77261258	+	0	NA	intron (NM_177710, intron 1 of 14)	L1_Rod|LINE|L1	41106	NM_177710	237860	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot homolog 2 (Drosophila)	protein-coding	6.260	2.202	0.930	7.650	5.730	3.856	nan	4.659	5.160	5.774	2.613	2.304	3.865	5.426	4.105	5.770	3.616	6.082	1.862	2.034	nan	3.310	1.306	0.977	4.042
7823	chr19	46412350	46416643	+	0	NA	intron (NM_001025391, intron 2 of 11)	intron (NM_001025391, intron 2 of 11)	17600	NM_015752	24069	Mm.41210	NM_015752	ENSMUSG00000025231	Sufu	Su(fu)	suppressor of fused homolog (Drosophila)	protein-coding	12.208	5.663	1.694	7.721	4.827	2.663	12.381	10.662	5.439	8.772	3.854	2.262	9.965	13.177	10.836	11.621	12.308	8.790	2.124	2.639	1.454	3.540	2.416	1.619	17.251
9792	chr3	126393136	126398874	+	0	NA	intron (NM_173451, intron 1 of 1)	MT2B2|LTR|ERVL	32153	NM_173451	271970	Mm.317021	NM_173451	ENSMUSG00000046561	Arsj	9330196J05Rik|D830047F08	arylsulfatase J	protein-coding	6.815	8.446	4.932	6.864	6.012	2.632	6.197	nan	6.865	5.627	4.560	4.011	7.547	8.873	6.328	nan	5.117	nan	4.090	1.981	1.390	1.909	3.530	2.514	5.771
10169	chr4	62739159	62740726	+	0	NA	Intergenic	L1MB8|LINE|L1	65968	NM_001310706	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	2.219	1.064	0.084	1.575	0.413	0.157	6.793	2.418	1.053	0.934	0.262	0.098	4.207	4.391	5.949	5.114	2.322	2.788	nan	0.056	0.235	1.486	0.814	0.243	5.008
5000	chr14	124024915	124027627	+	0	NA	intron (NM_010201, intron 3 of 4)	MER20|DNA|hAT-Charlie	38636	NR_045479	69393	Mm.491348	NR_045479	ENSMUSG00000099994	1700024B18Rik	-	RIKEN cDNA 1700024B18 gene	ncRNA	0.289	nan	0.221	0.686	0.284	0.166	0.181	0.244	0.184	0.445	0.121	0.376	0.139	0.338	0.179	0.402	0.196	0.293	8.309	3.192	4.282	8.483	6.198	7.075	0.542
11609	chr5	115964057	115967947	+	0	NA	intron (NM_007708, intron 23 of 46)	intron (NM_007708, intron 23 of 46)	58426	NM_031869	19079	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	5.256	6.653	4.106	7.298	2.999	2.130	5.820	4.036	2.985	4.258	3.690	1.943	3.986	6.784	4.563	4.383	2.665	3.650	nan	nan	2.436	0.531	nan	1.010	6.918
11095	chr5	28955916	28958341	+	0	NA	Intergenic	Intergenic	-238865	NM_001289757	56874	Mm.87352	NM_021470	ENSMUSG00000029130	Rnf32	1700009J01Rik|2700025B22Rik|4930542N22Rik|Lmbr2	ring finger protein 32	protein-coding	0.961	0.290	0.312	nan	1.794	0.607	1.021	0.668	2.084	1.771	6.742	3.492	1.252	1.779	0.876	0.821	0.603	1.575	0.545	0.293	0.065	0.290	0.456	0.372	0.664
11185	chr5	36903598	36905517	+	0	NA	intron (NM_172994, intron 1 of 8)	intron (NM_172994, intron 1 of 8)	-27678	NR_045505	71054	Mm.444807	NR_045505	ENSMUSG00000087487	Ppp2r2cos	4933401P06Rik	protein phosphatase 2, regulatory subunit B, gamma, opposite strand	ncRNA	4.736	5.414	2.550	3.397	2.194	1.718	2.964	2.662	3.463	4.031	2.401	1.519	3.777	3.780	3.021	2.816	2.946	2.810	0.966	1.413	1.162	0.943	1.023	0.672	3.089
8780	chr2	148162876	148164852	+	0	NA	Intergenic	L1_Mus1|LINE|L1	-116895	NM_010446	15376	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	3.360	0.745	0.173	4.426	1.381	0.342	0.909	1.302	3.056	1.846	0.953	1.744	0.682	2.050	1.572	2.215	1.290	3.321	nan	0.906	0.154	1.857	0.659	0.390	1.361
8830	chr2	153316476	153324558	+	0	NA	intron (NM_008444, intron 3 of 8)	intron (NM_008444, intron 3 of 8)	25293	NR_040318	72326	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	nan	2.994	1.079	1.919	0.762	0.446	2.902	4.074	nan	nan	0.552	1.004	nan	nan	1.901	2.338	1.109	nan	nan	2.595	2.580	6.239	3.190	2.465	nan
3991	chr13	37957687	37960734	+	0	NA	Intergenic	ORR1D2|LTR|ERVL-MaLR	34980	NM_025965	107513	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	3.630	nan	0.551	2.892	2.676	1.582	3.407	4.194	3.695	3.374	3.465	2.452	4.208	5.602	4.993	4.891	3.054	5.098	3.156	2.238	1.178	3.059	1.726	0.918	4.387
4929	chr14	102251071	102254572	+	0	NA	Intergenic	Intergenic	412198	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	2.486	2.313	1.341	2.165	3.237	1.402	3.205	6.189	3.193	2.896	2.540	4.846	4.054	4.509	3.504	3.820	2.334	3.688	2.373	1.615	1.071	1.091	3.429	2.492	1.539
5194	chr15	57942168	57944820	+	0	NA	intron (NM_001167679, intron 10 of 17)	intron (NM_001167679, intron 10 of 17)	31295	NM_001167679	210544	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	7.761	0.895	0.657	nan	3.225	1.578	10.164	9.481	5.002	4.803	1.535	1.287	9.915	6.570	5.803	6.135	8.707	6.499	1.440	1.165	0.936	1.217	1.024	1.713	4.610
15329	chr9	77763935	77773103	+	0	NA	intron (NM_010295, intron 1 of 15)	ORR1C2|LTR|ERVL-MaLR	13984	NM_010295	14629	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	4.882	3.415	1.244	6.398	2.469	1.233	3.449	5.326	5.329	6.526	2.589	1.486	4.207	5.604	6.277	7.622	3.724	7.569	1.818	nan	0.936	2.254	1.193	1.050	7.449
7528	chr19	8783740	8788836	+	0	NA	promoter-TSS (NM_146092)	promoter-TSS (NM_146092)	28	NM_146092	225895	Mm.220886	NM_146092	ENSMUSG00000003680	Taf6l	2810417N14Rik|BB223262|C530024J06Rik|Paf65a	TATA-box binding protein associated factor 6 like	protein-coding	11.190	9.591	4.644	9.959	6.741	3.492	10.672	10.792	8.662	11.165	11.250	4.092	7.632	12.526	10.034	12.448	11.541	10.427	1.644	3.032	2.025	3.161	2.789	1.927	12.682
9604	chr3	101303135	101307411	+	0	NA	Intergenic	Intergenic	-17334	NM_013486	12481	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	2.833	0.654	0.367	2.745	2.162	0.980	2.965	4.657	2.995	2.571	nan	1.668	1.669	2.483	3.113	nan	2.100	3.286	1.750	1.171	0.591	2.043	1.873	1.277	3.408
6683	chr17	46992017	46996200	+	0	NA	intron (NM_146078, intron 2 of 46)	MT2B|LTR|ERVL	16424	NM_146078	224826	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|ENSMUSG00000043296|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	13.915	20.495	10.376	17.439	13.949	10.848	17.144	10.412	10.661	22.562	13.460	8.558	11.254	18.015	12.592	14.846	13.977	11.915	8.485	5.134	7.555	8.019	6.732	11.097	21.390
15760	chrX	83114791	83117695	+	0	NA	intron (NM_007868, intron 1 of 78)	Lx3C|LINE|L1	167373	NM_007868	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding	2.109	5.895	3.066	1.812	0.862	0.540	0.739	1.081	1.473	1.728	1.662	0.441	1.257	0.943	1.634	1.630	nan	1.966	0.737	0.544	0.733	0.393	0.134	0.046	0.932
12540	chr6	99616120	99617258	+	0	NA	Intergenic	Intergenic	50082	NM_025829	66892	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	6.660	9.928	3.121	9.719	2.419	2.313	2.450	2.695	2.750	8.315	4.370	2.537	3.353	3.910	3.071	5.456	2.232	5.279	6.169	nan	3.509	7.792	6.109	6.607	11.341
8382	chr2	76383280	76386086	+	0	NA	TTS (NM_153405)	TTS (NM_153405)	14699	NM_153405	241490	Mm.33310	NM_153405	ENSMUSG00000042369	Rbm45	Drb1|Drbp1|G430095G15Rik	RNA binding motif protein 45	protein-coding	6.607	0.768	0.732	3.660	2.088	0.766	5.425	7.127	5.286	6.814	1.719	2.086	8.691	9.087	5.238	7.976	8.076	8.366	0.607	0.691	0.393	0.668	0.789	0.526	6.460
1332	chr10	59543256	59545310	+	0	NA	intron (NM_001033259, intron 1 of 7)	L1MB7|LINE|L1	72409	NM_001033259	215999	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	2.833	14.035	7.405	4.079	1.188	0.731	0.771	0.793	1.467	2.008	2.689	0.997	0.444	1.316	1.129	1.126	0.632	1.346	nan	2.094	1.799	2.942	1.710	2.111	nan
12140	chr6	32521562	32523388	+	0	NA	intron (NM_175750, intron 1 of 31)	intron (NM_175750, intron 1 of 31)	11334	NR_040277	319849	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	2.382	0.881	0.299	1.520	2.443	0.352	3.058	3.533	2.406	2.549	0.597	0.466	5.097	5.073	3.363	8.250	3.038	4.074	nan	0.504		0.536	0.541	0.162	3.573
5156	chr15	39793693	39795037	+	0	NA	intron (NM_022722, intron 7 of 9)	intron (NM_022722, intron 7 of 9)	-2680	NR_045788	100503072	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	OTTMUSG00000033244	predicted gene 16291	ncRNA	5.117	0.708	0.508	2.010	1.728	0.546	2.008	1.928	1.622	2.209	0.942	0.495	1.665	3.405	2.064	2.631	2.020	2.919	1.217	1.607	0.327	nan	1.310	0.572	2.744
5409	chr15	78672382	78679461	+	0	NA	intron (NM_183141, intron 1 of 1)	intron (NM_183141, intron 1 of 1)	42192	NM_183141	207393	Mm.323188	NM_183141	ENSMUSG00000043460	Elfn2	6330514E13|AW048948|BC094219|Lrrc62|Ppp1r29	leucine rich repeat and fibronectin type III, extracellular 2	protein-coding	9.291	nan	0.646	9.674	3.763	2.262	nan	11.448	5.124	7.081	7.709	4.022	9.724	9.558	9.516	8.734	nan	9.688	1.749	1.317	1.788	nan	1.038	1.012	14.248
6389	chr17	24303465	24309355	+	0	NA	intron (NM_001031621, intron 12 of 29)	MER21C|LTR|ERVL	40842	NM_001031621	381072	Mm.328842	NM_001031621	ENSMUSG00000035435	Abca17	-	ATP-binding cassette, sub-family A (ABC1), member 17	protein-coding	8.195	7.061	2.026	6.290	5.192	2.497	5.937	5.421	4.169	6.744	4.896	3.103	4.500	7.082	6.505	7.832	5.299	5.551	3.031	2.610	2.230	3.326	2.599	2.403	9.808
7287	chr18	60804537	60811745	+	0	NA	intron (NM_001042605, intron 2 of 8)	intron (NM_001042605, intron 2 of 8)	-3935	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	7.036	nan	0.705	7.789	5.160	2.906	6.612	7.794	5.793	8.196	6.507	3.641	7.904	7.190	5.312	7.045	4.408	8.086	nan	1.276	1.009	nan	2.232	2.077	5.816
14059	chr8	15151035	15152475	+	0	NA	Intergenic	Intergenic	94102	NM_008664	17930	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	3.418	1.236	0.441	0.347	0.164	0.258	0.327	4.867	0.990	0.959	0.284	0.202	1.188	0.813	0.882	3.839	2.048	1.553	1.529	0.676	0.323	2.149	1.113	0.765	4.194
6464	chr17	28061378	28064236	+	0	NA	TTS (NM_001286041)	TTS (NM_001286041)	17777	NM_013687	21463	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	5.403	1.026	0.531	6.180	2.932	1.509	4.665	5.589	4.605	4.931	1.378	1.077	3.702	6.182	5.721	7.983	4.714	5.693	2.035	1.236	1.144	0.742	2.324	2.564	6.675
1117	chr10	18126649	18128851	+	0	NA	Intergenic	Lx9|LINE|L1	71810	NM_001111065	19707	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	4.972	1.597	0.800	2.757	1.434	1.011	3.566	3.747	2.458	2.244	2.075	1.570	3.533	3.828	5.104	4.732	4.189	3.642	4.968	2.157	1.296	5.415	2.068	1.515	6.498
740	chr1	153473660	153476223	+	0	NA	intron (NM_007842, intron 7 of 27)	B1F|SINE|Alu	12719	NM_007842	13211	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	3.835	0.733	0.347	2.349	2.072	0.718	1.815	1.508	3.377	2.346	1.345	1.072	2.890	3.017	2.803	4.751	3.255	3.530	nan	0.435	0.448	0.649	nan	0.222	3.081
12372	chr6	85318762	85325682	+	0	NA	intron (NM_178639, intron 1 of 13)	RLTR9F|LTR|ERVK	11200	NM_178639	94282	Mm.121485	NM_178639	ENSMUSG00000033720	Sfxn5	C230001H08Rik	sideroflexin 5	protein-coding	5.623	2.613	0.823	4.316	1.978	1.114	3.822	2.561	2.717	4.348	3.091	1.710	1.802	3.600	3.651	4.717	1.996	3.676	nan	0.883	0.879	0.990	0.689	0.523	4.993
13709	chr7	128910849	128913021	+	0	NA	Intergenic	Lx|LINE|L1	167065	NM_001029982	207352	Mm.297105	NM_001029982	ENSMUSG00000055319	Sec23ip	D7Ertd373e|p125	Sec23 interacting protein	protein-coding	1.626	0.623	0.387	2.547	1.564	0.892	0.764	3.317	1.538	2.773	0.468	0.551	1.612	4.410	nan	2.112	0.718	4.862	0.528	0.217	0.056	1.358	0.250	0.283	3.049
9250	chr3	38043471	38045214	+	0	NA	Intergenic	Intergenic	145529	NR_040559	626410	Mm.389417	NR_040559	ENSMUSG00000106461	Gm20755	-	predicted gene, 20755	ncRNA	3.339	0.875	0.507	2.924	1.315	0.097	4.882	4.401	2.880	2.173	2.404	0.933	4.403	3.931	5.470	4.967	2.792	4.631	2.735	0.674	0.203	2.912	1.337	0.526	4.351
3434	chr12	75309238	75315192	+	0	NA	intron (NM_023275, intron 1 of 4)	intron (NM_023275, intron 1 of 4)	3902	NM_023275	80837	Mm.27467	NM_023275	ENSMUSG00000046768	Rhoj	1110005O19Rik|AW210585|Arhj|TC10L|TCL	ras homolog family member J	protein-coding	0.576	0.452	0.362	0.247	0.157	0.115	0.375	0.484	0.378	0.257	0.421	0.442	0.299	nan	0.231	nan	0.798	0.442	4.619	3.037	1.318	5.998	4.572	2.783	0.336
871	chr1	173024223	173027238	+	0	NA	Intergenic	B3|SINE|B2	68962	NM_008763	18313	Mm.377103	NM_008763	ENSMUSG00000037924	Olfr16	MOR23|MOR26713	olfactory receptor 16	protein-coding	8.435	0.508	0.501	1.519	4.238	2.482	3.476	1.409	1.691	1.806	1.056	1.060	4.833	2.793	2.540	5.003	4.212	4.000	1.068	1.137	1.178	0.622	1.202	1.133	5.535
12498	chr6	94601472	94606594	+	0	NA	TTS (NM_008377)	TTS (NM_008377)	2382	NR_106008	102466992		NR_106008	ENSMUSG00000098531	Mir7041	Gm27872|mmu-mir-7041	microRNA 7041	ncRNA	1.483	0.827	0.449	0.914	0.618	0.240	3.529	4.510	1.251	1.451	1.168	1.529	2.690	3.635	3.564	nan	1.901	2.185	nan	nan	0.648	4.467	1.964	0.865	1.313
5374	chr15	77026312	77028839	+	0	NA	intron (NM_013593, intron 1 of 3)	intron (NM_013593, intron 1 of 3)	-4788	NM_001164047	17189	Mm.404074	NM_013593	ENSMUSG00000018893	Mb	AI325109	myoglobin	protein-coding	7.932	nan	0.698	2.417	3.806	1.693	8.165	13.320	3.859	4.822	6.332	2.918	7.789	9.587	5.597	5.119	10.486	4.059	1.262	1.925	0.746	nan	2.008	1.121	4.085
14863	chr9	14182277	14186340	+	0	NA	Intergenic	B1F2|SINE|Alu	-91993	NM_030261	75747	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	6.786	11.955	4.327	5.985	1.873	0.967	6.197	9.545	5.246	7.026	7.689	3.286	7.978	5.693	5.527	10.032	4.627	7.565	2.710	1.295	1.466	3.904	1.679	1.406	10.929
12291	chr6	66977834	66982350	+	0	NA	intron (NM_001177560, intron 3 of 4)	intron (NM_001177560, intron 3 of 4)	-56507	NR_040278	320172	Mm.449039	NR_040278	ENSMUSG00000087231	E230016M11Rik	-	RIKEN cDNA E230016M11 gene	ncRNA	5.255	0.942	0.634	1.803	2.552	1.123	5.861	3.910	2.216	2.399	1.261	0.928	3.971	4.447	4.827	6.523	6.072	3.455	0.632	1.038	0.516	0.522	0.824	0.745	5.131
10576	chr4	129592231	129593893	+	0	NA	exon (NM_018799, exon 9 of 11)	exon (NM_018799, exon 9 of 11)	7586	NM_018799	54709	Mm.250874	NM_018799	ENSMUSG00000028798	Eif3i	36kDa|D4Ertd632e|Eif3s2|Trip1	eukaryotic translation initiation factor 3, subunit I	protein-coding	1.656	0.981	0.595	2.711	0.879	1.585	1.997	0.562	0.821	0.953	0.349	0.447	0.193	0.751	nan	1.214	0.288	1.462	5.845	3.024	2.870	2.818	4.672	5.113	1.251
10484	chr4	122690157	122696148	+	0	NA	intron (NM_023865, intron 1 of 4)	intron (NM_023865, intron 1 of 4)	3893	NM_023865	77432	Mm.491436	NM_023865	ENSMUSG00000023263	9530002B09Rik	Aump|Vpp1|Vppl	RIKEN cDNA 9530002B09 gene	protein-coding	2.367	2.941	1.409	2.618	0.877	0.358	2.232	2.985	2.183	2.215	1.891	1.516	1.909	2.215	2.746	nan	1.949	2.909	6.340	12.246	8.599	8.327	5.059	3.320	3.028
13276	chr7	73510085	73512729	+	0	NA	intron (NM_001081345, intron 5 of 38)	intron (NM_001081345, intron 5 of 38)	30339	NM_001081345	244059	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	5.675	1.843	1.197	nan	6.010	4.147	7.889	3.570	4.233	2.982	1.771	1.158	8.507	6.426	4.369	nan	4.312	5.622	0.939	1.258	1.342	0.510	0.891	0.564	nan
2039	chr11	23975924	23982740	+	0	NA	Intergenic	Intergenic	-84062	NM_172555	216578	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	0.649	14.220	7.182	nan	0.405	0.147	0.494	0.315	0.537	1.099	0.691	0.474	0.187	0.291	0.620	0.580	nan	0.747	0.390	0.676	0.780	0.593	0.473	0.364	0.782
5725	chr15	102233177	102236019	+	0	NA	TTS (NM_011244)	TTS (NM_011244)	-2663	NM_013566	16421	Mm.58	NM_013566	ENSMUSG00000001281	Itgb7	Ly69	integrin beta 7	protein-coding	9.303	10.421	5.382	8.955	6.614	6.083	10.285	10.754	6.574	8.476	6.898	3.439	11.452	10.350	8.492	7.521	7.234	8.434	4.886	3.182	4.633	5.626	5.752	5.083	8.111
8800	chr2	151359065	151363878	+	0	NA	Intergenic	Intergenic	59432	NR_040747	74660	Mm.170672	NR_040747	ENSMUSG00000087609	4930442J19Rik	1700029E19Rik|Gm14152|OTTMUSG00000015807	RIKEN cDNA 4930442J19 gene	ncRNA	5.068	1.047	0.676	3.418	4.766	2.646	5.177	6.130	3.479	4.439	1.611	1.986	6.402	5.781	4.999	5.505	4.445	4.299	nan	1.985	1.066	1.041	1.679	1.141	4.029
9004	chr2	166481463	166482997	+	0	NA	Intergenic	Intergenic	34779	NR_015558	319684	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	6.673	5.673	1.347	5.390	1.084	0.161	1.735	7.629	3.865	3.964	2.132	0.948	2.392	3.232	4.190	4.399	2.173	4.155	2.955	1.864	1.047	1.810	2.842	2.056	5.031
6212	chr16	92475196	92476180	+	0	NA	Intergenic	Intergenic	-3054	NM_029740	76785	Mm.444318	NM_029740		2410124H12Rik	-	RIKEN cDNA 2410124H12 gene	protein-coding	2.973	nan	0.078	1.213	1.345	1.381	2.250	4.952	0.843	2.062	2.718	1.256	2.737	4.416	2.381	4.061	2.733	2.535	0.299	0.372		nan	0.446	0.096	2.997
12547	chr6	100218222	100219508	+	0	NA	Intergenic	Intergenic	68493	NM_019743	56353	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	2.283	0.615	0.303	2.428	3.501	1.509	2.160	1.366	2.928	2.298	0.523	0.263	2.719	4.878	nan	2.696	2.069	4.022	nan	nan	0.402	0.411	0.730	0.395	1.292
13163	chr7	52089262	52093154	+	0	NA	Intergenic	L1Md_T|LINE|L1	-75492	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	6.818	13.990	5.088	3.059	1.875	0.909	9.461	12.932	3.947	4.006	1.630	0.854	11.228	6.560	8.448	9.631	6.917	6.805	4.365	2.325	1.550	3.569	2.198	1.868	9.078
3826	chr13	5835914	5837307	+	0	NA	Intergenic	Intergenic	21482	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	4.435	0.835	0.797	4.234	4.138	2.197	2.796	4.438	5.020	3.658	4.764	3.369	3.821	5.468	3.891	3.039	1.749	5.893	1.466	0.730	0.140	0.835	0.488	0.199	1.752
4042	chr13	43619446	43621495	+	0	NA	intron (NM_183204, intron 1 of 1)	MIRb|SINE|MIR	4673	NM_183204	328234	Mm.40588	NM_183204	ENSMUSG00000044164	Rnf182	C630023L15Rik	ring finger protein 182	protein-coding	5.037	2.087	0.880	4.868	3.532	2.014	2.182	5.001	3.087	3.197	1.815	1.214	3.690	5.677	3.980	5.387	2.400	nan	4.016	nan	2.737	6.641	2.592	1.873	3.414
15068	chr9	50373529	50374722	+	0	NA	Intergenic	Intergenic	-120400	NM_029639	76509	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	5.689	1.428	0.729	1.882	1.374	0.799	2.787	2.998	1.949	1.908	2.420	2.272	2.211	4.441	3.581	3.475	2.594	2.445	0.980	0.863	0.736	1.672	0.828	0.322	4.635
12118	chr6	31054972	31067577	+	0	NA	Intergenic	L1MB8|LINE|L1	1473	NR_029744	387222		NR_029744	ENSMUSG00000065610	Mir29a	Mirn29a|mir-29a|mmu-mir-29a	microRNA 29a	ncRNA	10.721	4.225	1.978	7.676	7.013	3.247	11.486	11.192	8.429	10.258	5.307	2.872	11.828	16.402	11.753	13.977	10.046	10.825	nan	2.848	1.577	4.111	2.324	1.498	10.400
11260	chr5	64587431	64588859	+	0	NA	Intergenic	MIR|SINE|MIR	22554	NR_045078	100042198	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	2.191	1.341	0.630	1.768	1.141	0.642	1.653	3.180	2.036	1.779	2.983	1.178	1.814	3.888	2.060	1.274	1.191	1.760	1.270	1.212	0.750	1.340	1.822	0.766	1.939
12465	chr6	91645458	91653405	+	0	NA	Intergenic	Lx7|LINE|L1	-34636	NM_009320	21366	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	4.676	1.282	0.563	nan	1.309	0.552	4.112	8.240	2.044	1.729	0.894	0.767	4.100	4.317	4.771	7.868	5.052	nan	nan	0.838	0.861	1.188	1.207	0.934	5.970
13281	chr7	73833754	73835823	+	0	NA	intron (NR_102375, intron 2 of 3)	intron (NR_102375, intron 2 of 3)	8864	NR_102375	100861851		NR_102375		Gm21269	-	predicted gene, 21269	ncRNA	5.095	6.346	2.370	5.703	2.154	1.939	4.930	7.443	2.578	5.417	3.253	2.444	4.514	6.458	6.201	nan	4.471	5.172	3.735	3.143	2.998	3.354	3.439	3.130	8.767
3774	chr12	114177401	114181068	+	0	NA	Intergenic	B2_Mm1t|SINE|B2	290232	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	5.612	4.376	1.577	4.605	2.898	1.648	5.209	6.038	2.739	4.643	7.915	2.896	4.038	6.297	5.478	6.209	3.980	5.781	7.035	3.308	2.476	8.412	4.128	2.972	8.876
14704	chr8	123637566	123645478	+	0	NA	Intergenic	ORR1C2|LTR|ERVL-MaLR	-12407	NM_133955	69581	Mm.168257	NM_133955	ENSMUSG00000039960	Rhou	2310026M05Rik|AI182090|Arhu|CDC42L1|G28K|WRCH-1|WRCH1|mG28K	ras homolog family member U	protein-coding	0.620	nan	0.307	nan	0.247	0.188	nan	nan	0.606	0.991	8.347	0.277	0.373	0.387	nan	0.919	0.398	nan	nan	0.306	0.350	nan	0.193	nan	nan
11498	chr5	104047654	104059649	+	0	NA	intron (NM_028794, intron 2 of 7)	intron (NM_028794, intron 2 of 7)	5648	NR_049192	100885831		NR_049192	ENSMUSG00000093690	Mir5619	Gm23866|mir-5619|mmu-mir-5619	microRNA 5619	ncRNA	6.672	1.757	0.778	7.917	7.037	4.452	nan	5.357	6.794	7.644	3.611	1.371	6.828	9.942	5.989	6.302	3.708	7.183	nan	1.072	0.865	1.285	0.983	0.646	3.683
1704	chr10	107813220	107815660	+	0	NA	intron (NM_001177567, intron 29 of 57)	intron (NM_001177567, intron 29 of 57)	-94413	NM_001081432	237523	Mm.391418	NM_001081432	ENSMUSG00000035916	Ptprq	-	protein tyrosine phosphatase, receptor type, Q	protein-coding	2.830	1.029	0.652	1.033	1.657	0.516	2.055	3.551	nan	2.484	5.177	1.825	3.080	2.405	2.455	3.060	2.286	3.160	0.744	0.456	0.316	0.583	0.195	0.210	2.637
8846	chr2	154471078	154472735	+	0	NA	intron (NM_009823, intron 1 of 10)	ID_B1|SINE|B4	35422	NM_009823	12396	Mm.29914	NM_009823	ENSMUSG00000038533	Cbfa2t2	A430091M07|C330013D05Rik|Cbfa2t2h|MTGR1	core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	protein-coding	nan	0.633	0.155	0.838	0.343	0.121	0.671	3.764	nan	nan	0.227	0.178	2.191	4.415	3.249	5.684	2.148	1.563	nan	0.228	0.353	0.425	0.345	0.356	1.849
688	chr1	137746294	137751408	+	0	NA	Intergenic	B4A|SINE|B4	-217604	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	1.442	0.789	0.789	nan	0.565	0.406	1.374	2.096	2.132	1.709	8.435	3.894	1.596	nan	1.381	nan	0.755	1.410	1.287	0.564	0.551	0.960	1.059	0.899	nan
750	chr1	154941310	154944895	+	0	NA	Intergenic	L1MEf|LINE|L1	156534	NM_010500	15939	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	6.051	0.763	0.398	2.064	2.588	1.155	9.570	3.508	nan	2.752	2.564	1.033	5.028	4.937	4.407	6.958	3.752	4.740	nan	0.672	0.342	0.511	nan	0.590	5.469
1126	chr10	18729702	18737326	+	0	NA	intron (NM_001033258, intron 2 of 33)	intron (NM_001033258, intron 2 of 33)	10244	NM_001033258	215821	Mm.40491	NM_001033258	ENSMUSG00000019852	Arfgef3	9630004D11|B930094H20Rik|BIG3|D10Bwg1379e|mKIAA1244	ARFGEF family member 3	protein-coding	7.169	11.714	4.737	5.849	4.026	1.766	2.578	3.487	nan	4.990	2.652	1.974	3.548	nan	3.904	4.930	4.234	5.410	1.892	2.090	1.161	2.008	1.368	1.039	5.342
9221	chr3	32294504	32317091	+	0	NA	Intergenic	MuRRS4-int|LTR|ERV1	-59692	NR_027966	67576	Mm.435324	NR_027966		4930429B21Rik	-	RIKEN cDNA 4930429B21 gene	ncRNA	5.620	2.840	1.262	5.425	5.402	3.318	7.659	5.513	nan	7.135	2.238	1.849	8.175	9.098	7.450	7.191	6.030	7.762	1.843	1.405	1.134	1.559	1.256	0.984	6.162
6738	chr17	56017053	56019919	+	0	NA	intron (NM_013664, intron 7 of 9)	intron (NM_013664, intron 7 of 9)	9285	NM_026530	68047	Mm.358710	NM_026530	ENSMUSG00000003199	Mpnd	E130307M08Rik	MPN domain containing	protein-coding	4.989	3.696	2.008	4.960	4.921	3.205	4.984	4.978	3.891	4.263	2.946	3.011	4.108	6.257	5.237	6.050	5.754	5.098	3.458	3.799	2.574	2.761	3.184	3.298	4.995
10079	chr4	48758325	48761472	+	0	NA	Intergenic	Intergenic	96384	NM_026509	68016	Mm.133444	NM_026509	ENSMUSG00000028348	Murc	2310039E09Rik	muscle-related coiled-coil protein	protein-coding	4.705	nan	0.365	1.022	0.866	0.429	2.594	1.258	2.663	3.169	0.396	0.415	3.363	2.914	3.375	5.215	3.287	3.527	1.289	0.765	0.535	nan	0.696	0.446	5.782
1534	chr10	82091990	82093214	+	0	NA	Intergenic	L1_Mur1|LINE|L1	-35411	NM_001163064	216177	Mm.482395	NM_001163064	ENSMUSG00000078435	AU041133	-	expressed sequence AU041133	protein-coding	7.632	14.247	5.063	8.638	2.585	1.270	4.974	6.519	4.755	8.232	5.877	3.269	5.486	5.099	9.299	9.400	5.881	9.911	5.050	1.958	2.129	5.167	2.801	3.097	14.040
2570	chr11	85834982	85836834	+	0	NA	exon (NM_009324, exon 3 of 7)	exon (NM_009324, exon 3 of 7)	3293	NM_009324	21385	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	5.305	0.866	0.384	2.589	2.317	1.786	4.043	2.073	2.698	4.114	0.935	0.348	3.885	5.229	4.159	5.104	4.463	2.963	0.439	0.515	0.265	nan	0.457	0.491	4.456
7972	chr2	13326126	13338684	+	0	NA	exon (NM_001081084, exon 47 of 67)	exon (NM_001081084, exon 47 of 67)	-60990	NM_009105	20163	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	5.457	2.297	1.274	5.280	3.016	2.027	2.772	4.585	4.038	3.611	4.445	2.871	3.563	3.948	3.082	3.018	2.724	4.823	0.906	1.257	0.768	1.293	0.587	0.471	2.261
13102	chr7	31372584	31379176	+	0	NA	exon (NM_001256073, exon 2 of 3)	exon (NM_001256073, exon 2 of 3)	288	NM_001256073	384585	Mm.305164	NM_001256073	ENSMUSG00000095257	Scgb1b3	Abpa21|Abpa3|EG384585|Gm5325	secretoglobin, family 1B, member 3	protein-coding	6.983	9.216	2.770	8.058	3.316	2.020	7.719	11.520	4.991	8.317	3.923	2.642	8.390	9.782	8.828	8.386	5.797	9.935	2.925	1.887	1.895	3.458	2.324	2.607	12.751
6697	chr17	47637609	47650468	+	0	NA	intron (NM_198421, intron 1 of 6)	intron (NM_198421, intron 1 of 6)	13348	NM_198421	224836	Mm.59393	NM_198421	ENSMUSG00000090115	Usp49	C330046L10Rik|Gm545	ubiquitin specific peptidase 49	protein-coding	8.783	11.432	5.096	9.593	7.434	5.825	9.511	8.626	6.482	7.872	6.229	3.817	7.267	10.652	8.398	9.879	7.306	7.517	3.038	2.772	2.838	2.609	3.855	3.506	9.066
1915	chr11	4490886	4495492	+	0	NA	intron (NM_028860, intron 11 of 17)	B3A|SINE|B2	-52107	NM_029458	75828	Mm.159592	NM_029458	ENSMUSG00000020419	Hormad2	4930529M09Rik	HORMA domain containing 2	protein-coding	7.057	8.649	4.448	6.547	5.090	3.761	4.070	5.202	5.240	8.274	3.989	2.728	5.318	7.807	5.150	6.272	5.337	6.156	3.466	nan	2.413	2.644	3.081	2.757	5.786
3729	chr12	112014785	112016747	+	0	NA	intron (NM_029056, intron 12 of 35)	intron (NM_029056, intron 12 of 35)	-35015	NM_001127685	217874	Mm.134213	NM_001127685	ENSMUSG00000091402	Rd3l	A930011N13	retinal degeneration 3-like	protein-coding	2.447	8.408	5.973	nan	1.612	1.137	1.236	1.349	nan	1.263	1.184	1.369	1.006	1.708	1.271	1.824	2.902	1.771	2.082	1.789	2.302	1.478	2.064	1.645	2.169
4523	chr14	22379334	22380971	+	0	NA	intron (NM_028275, intron 2 of 6)	ORR1C2-int|LTR|ERVL-MaLR	162646	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	2.331	0.951	0.482	1.574	2.227	1.381	1.348	1.975	nan	1.212	1.426	1.024	1.942	4.914	1.406	1.643	0.903	1.321	0.950	0.730	0.777	nan	0.705	0.706	2.362
9981	chr4	35171950	35174013	+	0	NA	Intergenic	Intergenic	-15497	NM_178061	214944	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	8.838	9.854	3.111	8.136	4.602	2.193	4.081	6.431	4.599	9.302	5.860	3.871	5.396	7.044	6.197	7.704	4.905	7.621	6.563	4.246	2.563	5.177	4.518	5.074	11.807
83	chr1	34528267	34530844	+	0	NA	Intergenic	B3|SINE|B2	-6093	NM_007685	12627	Mm.2531	NM_007685	ENSMUSG00000026124	Cfc1	AV265756|b2b970Clo|cryptic	cripto, FRL-1, cryptic family 1	protein-coding	6.719	13.438	5.199	3.151	1.764	0.760	5.621	2.189	1.722	3.563	1.954	0.929	4.737	2.676	3.613	8.725	5.548	3.723	1.890	1.709	1.030	2.781	1.559	1.107	10.859
11361	chr5	76004395	76007761	+	0	NA	Intergenic	Intergenic	-27650	NM_010612	16542	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|sVEGFR-2	kinase insert domain protein receptor	protein-coding	0.558	0.574	0.427	1.141	0.197	0.210	0.370	0.264	0.645	0.333	0.274	0.577	0.190	0.197	0.298	nan	0.357	nan	2.936	1.426	0.692	3.942	1.909	1.577	0.492
3375	chr12	70430631	70434854	+	0	NA	intron (NR_037248, intron 2 of 4)	MERVL_2A-int|LTR|ERVL	-20412	NM_028339	72736	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	6.725	0.976	0.853	3.279	3.927	3.363	4.938	2.413	4.279	4.116	1.673	1.305	6.492	8.010	4.530	4.833	8.894	4.056	0.792	0.935	1.175	0.545	0.578	1.105	4.494
6183	chr16	90179504	90181826	+	0	NA	Intergenic	Intergenic	38428	NR_033476	100038709	Mm.484070	NR_033476		Gm10789	ENSMUSG00000074924	predicted gene 10789	ncRNA	1.000	nan	0.441	1.517	0.508	0.318	0.523	0.859	2.037	1.229	7.194	3.526	0.621	0.686	0.929	1.736	1.636	nan	1.352	1.120	0.847	3.500	0.692	0.374	1.693
6422	chr17	26361306	26365146	+	0	NA	Intergenic	Intergenic	-51739	NM_001081656	240055	Mm.133211	NM_001081656	ENSMUSG00000034413	Neurl1b	C230078M08Rik|EG240055	neuralized E3 ubiquitin protein ligase 1B	protein-coding	4.252	0.909	0.440	3.267	3.590	1.989	5.417	5.096	4.919	4.784	1.803	1.670	5.664	5.367	4.659	6.593	5.415	4.185	3.783	1.697	2.373	3.231	2.912	2.684	6.211
14252	chr8	63863555	63867924	+	0	NA	Intergenic	Intergenic	86431	NM_001195687	244495	Mm.485331	NM_001195687	ENSMUSG00000094443	Sgol2b	EG244495|Gm4975|Sgo2B	shugoshin like 2b (S. pombe)	protein-coding	6.421	0.705	0.504	3.325	2.701	1.649	6.400	9.600	4.894	5.138	1.374	1.883	8.049	7.713	8.381	10.081	8.124	5.210	nan	0.972	1.170	1.601	1.042	0.796	7.671
8353	chr2	72841198	72844243	+	0	NA	Intergenic	Intergenic	-29003	NR_102349	76218	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	5.097	4.535	2.040	5.036	3.811	2.471	8.182	6.893	3.457	3.687	5.234	2.049	3.785	5.545	5.313	6.569	6.423	4.058	2.343	2.434	2.209	2.930	2.451	1.740	6.604
2672	chr11	94944546	94951023	+	0	NA	intron (NM_007742, intron 39 of 50)	intron (NM_007742, intron 39 of 50)	11560	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	2.973	nan	0.679	4.558	3.445	2.053	3.435	4.205	2.779	2.743	6.319	5.537	2.563	4.446	3.554	2.767	nan	2.780	0.768	nan	0.896	2.570	nan	nan	2.152
15592	chr9	120510232	120512514	+	0	NA	Intergenic	ORR1F|LTR|ERVL-MaLR	18767	NM_026892	68969	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	4.735	1.493	0.392	2.885	0.949	0.576	3.975	4.926	3.972	3.964	2.543	2.892	6.228	5.771	5.824	7.396	2.467	5.419	1.066	0.501	0.430	0.818	nan	0.440	7.068
12863	chr6	146874916	146878616	+	0	NA	Intergenic	Intergenic	-11728	NM_001170433	67533	Mm.103382	NM_026221	ENSMUSG00000016487	Ppfibp1	4632409B19Rik|AW214454|AW261454	PTPRF interacting protein, binding protein 1 (liprin beta 1)	protein-coding	3.540	1.039	0.538	2.318	2.349	1.082	3.041	5.570	1.665	nan	2.028	1.087	2.162	4.091	3.691	nan	3.106	2.823	1.117	nan	0.600	nan	1.014	0.484	nan
14760	chr8	126506209	126507893	+	0	NA	Intergenic	ORR1A2|LTR|ERVL-MaLR	-31986	NM_001159907	212728	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	7.891	9.718	3.527	10.158	5.822	4.312	nan	7.518	5.179	10.718	5.263	2.861	6.175	7.466	8.385	9.458	5.475	9.043	nan	3.337	4.910	10.166	5.443	6.348	14.383
10378	chr4	109336982	109342151	+	0	NA	intron (NM_007943, intron 12 of 24)	intron (NM_007943, intron 12 of 24)	-3490	NM_001159964	13858	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	4.599	9.993	3.495	8.282	4.659	3.612	2.083	nan	4.332	5.897	4.837	3.030	3.472	4.925	5.189	5.720	3.091	nan	9.197	4.699	4.124	9.379	5.783	4.380	8.064
11892	chr5	140856895	140860482	+	0	NA	Intergenic	Intergenic	-28257	NM_010302	14673	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	6.454	8.352	6.904	3.982	2.555	2.589	5.436	3.611	3.594	3.585	2.755	1.720	4.834	5.455	3.405	3.994	4.153	3.661	1.143	2.304	2.162	0.908	nan	1.089	3.267
962	chr1	183140217	183142357	+	0	NA	intron (NM_001278219, intron 2 of 8)	intron (NM_001278219, intron 2 of 8)	6270	NM_001278220	68897	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched RND transporter family member 1	protein-coding	14.791	13.965	4.477	13.718	11.099	8.547	11.428	11.050	5.733	20.362	8.419	3.797	10.498	10.807	8.768	15.163	7.700	10.276	5.395	3.151	5.694	6.075	4.546	7.329	19.343
2094	chr11	43194352	43203132	+	0	NA	intron (NM_176999, intron 7 of 22)	intron (NM_176999, intron 7 of 22)	48865	NM_176999	319767	Mm.252339	NM_176999	ENSMUSG00000055415	Atp10b	5930426O13Rik|9030605H24Rik	ATPase, class V, type 10B	protein-coding	1.874	11.689	7.704	2.551	1.156	0.704	0.677	nan	1.252	1.169	0.872	0.584	0.378	0.405	0.745	nan	0.776	nan	nan	1.816	1.276	nan	nan	1.576	1.003
3778	chr12	114278039	114281759	+	0	NA	Intergenic	MMETn-int|LTR|ERVK	189567	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	nan	1.293	0.802	1.522	3.406	2.250	1.051	1.596	1.550	1.489	2.307	1.686	1.548	1.646	1.240	nan	1.271	1.808	4.074	3.501	2.378	3.630	5.504	4.184	nan
12619	chr6	115472123	115474924	+	0	NA	intron (NM_001308352, intron 7 of 7)	intron (NM_001308352, intron 7 of 7)	51457	NM_011146	19016	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	4.735	1.474	0.543	4.765	2.116	1.279	2.611	5.934	3.418	3.681	1.315	3.676	2.404	3.730	3.343	4.439	2.079	3.544	1.480	0.731	0.887	2.134	nan	1.116	5.293
3090	chr11	119797713	119800619	+	0	NA	intron (NM_028898, intron 8 of 33)	intron (NM_028898, intron 8 of 33)	35199	NR_045313	319454	Mm.442144	NR_045312	ENSMUSG00000085081	Rptoros	A430071A18Rik	regulatory associated protein of MTOR, complex 1, opposite strand	ncRNA	3.175	1.703	0.529	3.560	0.800	0.370	4.375	5.226	3.103	nan	6.545	2.806	3.684	4.007	4.707	5.456	2.168	4.209	1.109	nan	0.822	1.927	0.460	0.443	4.779
7663	chr19	24581270	24582804	+	0	NA	Intergenic	Intergenic	-26210	NM_008846	18719	Mm.217214	NM_008846	ENSMUSG00000024867	Pip5k1b	PI4P5K-I[b]|PIP5K1-beta|PIP5KIbeta|Pipk5b|STM7	phosphatidylinositol-4-phosphate 5-kinase, type 1 beta	protein-coding	2.856	0.979	0.795	2.628	2.710	1.128	2.588	5.466	3.952	3.055	1.231	1.101	4.556	3.608	5.302	5.898	3.962	5.735	1.808	1.225	0.804	4.815	1.970	1.002	4.588
6068	chr16	38704858	38709585	+	0	NA	intron (NM_020260, intron 1 of 11)	intron (NM_020260, intron 1 of 11)	5814	NM_020260	12549	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	4.651	1.191	0.526	5.874	3.588	1.092	1.311	1.138	4.309	4.443	1.898	0.701	3.958	6.598	4.356	nan	3.689	6.064	0.776	0.705	0.259	0.713	0.690	0.337	7.644
13246	chr7	71148112	71149778	+	0	NA	Intergenic	L2a|LINE|L2	-760750	NR_130995	78156	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	nan	6.311	5.998	2.072	2.235	0.996	1.202	1.595	1.714	1.768	1.261	1.240	0.958	2.110	0.920	1.347	1.414	1.211	1.346	1.844	1.696	0.772	1.785	2.001	1.245
10897	chr4	148943278	148947897	+	0	NA	TTS (NM_027195)	TTS (NM_027195)	141195	NM_027195	69743	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	6.584	nan	0.361	6.059	3.089	2.261	5.667	6.970	3.441	4.235	4.311	1.714	4.962	8.378	6.662	7.328	4.516	6.951	2.812	1.123	1.177	4.964	2.425	2.385	11.257
1051	chr1	194979752	194981830	+	0	NA	Intergenic	Intergenic	-3832	NR_033564	320400	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	4.419	1.090	0.457	2.877	1.616	0.685	3.129	4.930	2.339	2.434	6.630	2.695	4.101	4.245	5.508	7.213	3.947	4.397	7.396	2.978	3.117	9.336	6.045	3.944	nan
9142	chr3	10012709	10018754	+	0	NA	intron (NM_001272097, intron 3 of 3)	intron (NM_001272097, intron 3 of 3)	3146	NM_001272098	16592	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	4.271	2.330	0.954	1.506	1.290	0.646	7.097	5.638	1.603	2.065	0.755	1.068	1.808	2.956	5.837	7.843	7.011	3.748	1.652	1.556	0.971	2.022	1.468	1.142	5.869
3033	chr11	117192287	117196869	+	0	NA	Intergenic	Intergenic	-5083	NM_001113486	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	6.279	10.243	2.636	5.660	2.214	1.153	nan	3.654	2.134	3.630	5.762	1.799	2.300	3.579	3.568	3.653	1.613	nan	1.063	nan	1.467	1.131	0.964	0.634	6.370
518	chr1	121194544	121201030	+	0	NA	Intergenic	Intergenic	110382	NR_110450	98452	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	3.609	0.554	0.266	2.429	2.609	1.846	3.634	4.830	2.277	2.953	2.360	1.430	4.740	4.337	3.314	5.170	4.065	3.096	1.373	1.522	1.293	1.726	2.340	1.648	4.310
14125	chr8	34894654	34898173	+	0	NA	intron (NM_175091, intron 3 of 26)	L1ME1|LINE|L1	69277	NM_175091	21951	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	4.684	1.759	0.596	6.642	1.910	0.840	2.318	3.004	2.732	2.817	2.297	2.038	1.798	2.888	2.398	2.886	1.712	3.821	0.935	1.099	0.722	1.462	0.895	0.723	3.304
4802	chr14	68220413	68222466	+	0	NA	Intergenic	L1ME3B|LINE|L1	-96435	NM_008691	18040	Mm.242832	NM_008691	ENSMUSG00000022054	Nefm	NF-M|NF160|NF165|Nef3|Nfm	neurofilament, medium polypeptide	protein-coding	4.571	0.420	0.386	1.429	1.575	0.750	5.940	5.025	2.099	2.059	0.816	0.540	4.855	3.653	4.851	5.846	3.034	4.031	0.755	nan	0.134	0.427	0.370	0.094	4.903
12716	chr6	127308924	127310753	+	0	NA	Intergenic	Intergenic	-1871	NR_073373	232386	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	3.114	nan	0.635	2.442	2.161	1.537	4.711	nan	3.483	3.861	4.100	3.986	4.639	5.175	5.467	7.662	2.537	4.380	0.755	0.584	0.401	0.372	0.426	0.269	4.385
5268	chr15	66574786	66576884	+	0	NA	Intergenic	Intergenic	-1737	NM_001081409	239510	Mm.267473	NM_178718	ENSMUSG00000072501	Phf20l1	CGI-72|E130113K22Rik	PHD finger protein 20-like 1	protein-coding	3.993	1.649	0.444	4.594	0.851	0.173	1.169	2.173	2.512	2.878	1.239	0.807	1.392	2.776	2.468	3.324	1.321	3.563	1.067	0.344	0.292	1.603	0.367	0.188	2.992
15357	chr9	83461727	83467200	+	0	NA	Intergenic	L1Md_T|LINE|L1	-23336	NM_029434	75782	Mm.199698	NM_027448	ENSMUSG00000032258	Lca5	4930431B11Rik|5730406O13Rik|AV274874|ORF64	Leber congenital amaurosis 5 (human)	protein-coding	1.918	2.337	0.770	1.050	0.567	0.155	0.465	0.725	1.228	1.264	2.103	2.024	0.803	0.486	1.065	1.197	0.558	1.603	1.498	1.331	0.499	1.968	1.376	0.510	4.485
14913	chr9	21960228	21962698	+	0	NA	exon (NM_010149, exon 4 of 8)	exon (NM_010149, exon 4 of 8)	2113	NM_010149	13857	Mm.2653	NM_010149	ENSMUSG00000006235	Epor	-	erythropoietin receptor	protein-coding	3.725	6.479	2.608	6.400	2.525	1.309	3.249	4.248	3.352	5.119	3.572	3.310	3.429	4.696	4.459	5.925	3.145	5.203	2.482	1.573	1.837	3.440	2.345	2.592	9.054
2906	chr11	106518035	106529662	+	0	NA	intron (NM_198292, intron 7 of 11)	intron (NM_198292, intron 7 of 11)	22857	NR_030703	100216537		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	8.516	5.139	2.701	7.982	6.180	4.409	6.755	6.765	6.305	6.745	6.693	4.427	5.925	7.572	6.692	6.921	5.779	7.433	2.486	3.986	3.917	nan	2.850	2.888	6.775
2732	chr11	97686320	97688526	+	0	NA	intron (NM_001085500, intron 2 of 2)	intron (NM_001085500, intron 2 of 2)	1471	NM_001085500	217149	Mm.29659	NM_001085500	ENSMUSG00000078695	Cisd3	Mel-13|Mel13	CDGSH iron sulfur domain 3	protein-coding	2.588	4.132	0.502	3.422	1.865	0.684	1.941	2.989	2.139	2.067	3.702	2.168	1.984	4.167	2.436	1.907	nan	2.521	0.943	nan	0.868	0.892	nan	nan	2.101
2852	chr11	103152631	103154718	+	0	NA	Intergenic	B1_Mm|SINE|Alu	-17464	NM_001077698	57778	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	4.156	1.714	0.984	5.584	2.418	0.711	1.729	2.642	3.325	3.306	1.459	0.561	1.674	3.174	2.476	2.935	1.650	nan	3.012	3.267	2.200	nan	2.189	1.679	3.408
3221	chr12	21334516	21335751	+	0	NA	intron (NR_120376, intron 11 of 18)	intron (NR_120376, intron 11 of 18)	18741	NM_026347	67732	Mm.335830	NM_026347	ENSMUSG00000062054	Iah1	1500019E20Rik|4833421E05Rik	isoamyl acetate-hydrolyzing esterase 1 homolog	protein-coding	2.878	1.495	0.700	2.953	2.388	1.720	2.036	1.948	2.211	2.188	0.776	0.844	4.192	3.672	2.849	3.919	2.790	3.329	1.601	0.670	0.411	1.461	1.618	1.242	4.494
6025	chr16	33695560	33699414	+	0	NA	intron (NM_175256, intron 1 of 14)	intron (NM_175256, intron 1 of 14)	13021	NM_175256	77446	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629|OTTMUSG00000027315	heart development protein with EGF-like domains 1	protein-coding	3.534	7.494	4.076	6.407	3.351	2.367	2.477	2.689	2.726	2.387	1.081	1.604	1.527	nan	2.355	3.458	2.021	3.495	3.297	1.336	1.646	2.619	3.213	3.367	3.538
2155	chr11	50189984	50192950	+	0	NA	intron (NM_026543, intron 3 of 6)	intron (NM_026543, intron 3 of 6)	16616	NM_026543	68067	Mm.40828	NM_026543	ENSMUSG00000020381	Mrnip	2900016G09Rik|3010026O09Rik|AI851514|AW475975	MRN complex interacting protein	protein-coding	9.075	16.461	4.288	12.634	5.924	3.008	7.250	7.252	5.733	12.628	7.099	4.377	8.156	10.381	10.275	11.335	6.206	8.802	6.789	3.459	4.335	9.458	3.915	5.207	14.471
1711	chr10	110592652	110594379	+	0	NA	Intergenic	Intergenic	-7135	NR_028438	109335	Mm.367727	NR_028438		9230102K24Rik	-	RIKEN cDNA 9230102K24 gene	ncRNA	nan	14.986	7.339	2.098	0.657	0.380	0.471	0.772	nan	0.883	0.390	0.486	0.698	1.069	0.984	0.942	0.688	1.007	1.199	1.070	1.061	3.937	0.963	1.199	1.257
2991	chr11	115887898	115893565	+	0	NA	Intergenic	Intergenic	-9408	NM_183259	66528	Mm.275740	NM_183259	ENSMUSG00000048442	Smim5	2210020M01Rik	small integral membrane protein 5	protein-coding	7.413	7.868	3.311	7.903	5.859	4.402	nan	6.671	5.851	6.679	4.136	3.084	4.790	6.386	6.124	7.303	4.536	7.306	3.401	nan	2.225	4.130	1.889	2.183	7.416
13376	chr7	87543930	87550403	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-37002	NM_001081414	108071	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	8.415	5.447	1.326	10.087	3.984	2.626	6.675	9.274	nan	12.703	7.488	4.741	7.438	9.787	7.935	7.757	5.012	nan	2.645	1.466	0.985	nan	1.539	1.721	12.702
2836	chr11	102504633	102506399	+	0	NA	intron (NM_001159492, intron 5 of 7)	intron (NM_001159492, intron 5 of 7)	-35633	NM_010575	16399	Mm.26646	NM_010575	ENSMUSG00000034664	Itga2b	AI172977|CD41|CD41B|GpIIb|alphaIIb	integrin alpha 2b	protein-coding	6.554	nan	0.431	3.431	7.708	5.662	7.154	5.719	5.155	6.159	4.349	3.283	5.595	8.373	5.888	6.140	6.776	5.468	0.792	nan	0.634	0.550	nan	nan	5.655
4780	chr14	65991493	65997576	+	0	NA	intron (NM_178747, intron 8 of 11)	intron (NM_178747, intron 8 of 11)	14676	NM_178747	268756	Mm.26207	NM_178747	ENSMUSG00000034450	Gulo	5730581M22|AU018375|BC028822|GLO|LGO|sfx|unh|unhip	gulonolactone (L-) oxidase	protein-coding	5.419	2.162	1.116	3.733	2.707	1.941	5.909	9.947	3.884	4.630	4.391	2.426	5.821	7.336	6.703	7.900	4.299	4.977	2.149	nan	1.129	2.859	1.810	1.463	9.399
3720	chr12	110732485	110733992	+	0	NA	Intergenic	B1_Mm|SINE|Alu	-4659	NM_027149	69641	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	5.533	0.549		nan	0.447	0.236	2.610	2.336	2.375	3.924	0.308	0.138	2.595	5.349	3.736	7.814	7.413	2.106	0.438	0.256	0.007	0.258	0.292	0.190	11.179
384	chr1	87951766	87957025	+	0	NA	intron (NM_001033291, intron 21 of 27)	intron (NM_001033291, intron 21 of 27)	54156	NM_001198573	227334	Mm.80484	NM_001033291	ENSMUSG00000005501	Usp40	B230215L03Rik|C730029K03	ubiquitin specific peptidase 40	protein-coding	2.631	0.735	0.418	1.207	0.568	0.350	2.523	5.693	1.284	1.486	0.684	0.877	3.557	2.490	2.165	5.275	2.636	2.268	1.173	0.583	0.641	nan	0.959	0.919	1.665
3242	chr12	25897366	25908536	+	0	NA	Intergenic	MT2B1|LTR|ERVL	307554	NR_131149	629481	Mm.390460	NR_131149		Gm29687	-	predicted gene, 29687	ncRNA	7.635	5.316	2.660	2.889	2.279	1.348	6.526	4.153	3.434	3.466	2.461	1.673	3.529	3.109	5.869	6.719	4.567	5.042	1.127	1.265	0.877	1.447	0.822	0.496	9.453
4052	chr13	44702597	44703510	+	0	NA	Intergenic	B1_Mm|SINE|Alu	-27721	NM_021878	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	2.130	1.783	0.239	nan	1.265	0.619	2.234	3.005	1.752	2.747	0.732	0.348	2.084	4.196	2.701	3.488	2.223	2.863	1.471	nan	0.246	1.973	1.745	0.512	3.401
5628	chr15	98821575	98824463	+	0	NA	intron (NM_016781, intron 2 of 11)	B4A|SINE|B4	8489	NM_016781	19082	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	7.719	7.583	2.453	8.470	2.581	0.844	7.236	10.182	4.802	5.882	3.919	2.967	10.563	8.036	8.567	8.116	7.805	8.161	7.542	3.668	1.712	8.802	4.316	3.002	7.920
7868	chr19	53404175	53405329	+	0	NA	Intergenic	Intergenic	-14179	NM_172429	76479	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	2410004J23Rik|4933440I19Rik	survival motor neuron domain containing 1	protein-coding	6.317	3.885	2.263	4.939	4.988	3.338	5.529	6.978	2.027	7.782	4.038	2.672	2.377	5.936	3.433	4.341	5.079	3.562	1.695	4.831	5.310	2.350	6.818	6.719	9.694
5956	chr16	25958355	25960386	+	0	NA	TTS (NM_173379)	TTS (NM_173379)	146414	NM_173379	210530	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	3.914	1.691	1.033	0.882	0.640	0.291	4.264	5.347	2.162	1.875	1.186	0.436	nan	5.345	4.025	7.053	3.288	3.450	0.753	0.258	0.181	0.854	nan	0.234	5.708
13739	chr7	133556942	133562098	+	0	NA	Intergenic	ID_B1|SINE|B4	42595	NM_028654	73808	Mm.159067	NM_028654	ENSMUSG00000030976	Tex36	4930404H21Rik	testis expressed 36	protein-coding	0.870	13.510	8.087	0.997	0.702	0.497	0.663	0.735	nan	0.903	0.740	0.526	0.450	0.505	0.803	0.670	0.601	0.821	0.817	1.435	1.213	0.383	0.722	0.430	0.746
7403	chr18	75855977	75857743	+	0	NA	intron (NM_145356, intron 1 of 4)	L1MC3|LINE|L1	36682	NM_145356	207259	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	5.027	nan	0.689	6.645	3.068	1.419	2.977	4.376	2.301	6.720	3.285	1.770	3.135	3.828	4.160	4.310	2.949	3.959	4.020	nan	3.206	6.316	4.826	5.884	10.027
1735	chr10	111277790	111282085	+	0	NA	intron (NM_175489, intron 15 of 23)	intron (NM_175489, intron 15 of 23)	-18742	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	nan	0.482	0.416	0.619	0.711	0.721	1.040	1.329	nan	1.094	6.765	5.685	0.846	0.756	1.183	1.041	1.241	1.105	2.276	1.446	1.267	2.502	1.441	1.412	0.766
13485	chr7	106622438	106623597	+	0	NA	intron (NM_001277179, intron 1 of 2)	intron (NM_001277179, intron 1 of 2)	21628	NM_001277179	434223	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	1.407	0.918	0.428	2.996	3.366	2.983	1.479	3.589	1.836	2.444	2.938	2.131	2.024	4.787	1.955	1.413	1.244	2.373	nan	1.371	1.463	3.728	1.729	1.505	2.900
15433	chr9	102527492	102529567	+	0	NA	intron (NM_024291, intron 8 of 10)	intron (NM_024291, intron 8 of 10)	22391	NM_024291	16716	Mm.101692	NM_024291	ENSMUSG00000035606	Ky	CD1|D9Mgc44e|ky	kyphoscoliosis peptidase	protein-coding	10.022	13.429	3.925	11.910	3.794	2.293	6.791	6.994	6.463	14.600	8.267	5.500	8.716	9.929	9.393	12.072	4.773	10.415	5.617	3.605	3.559	7.113	3.924	3.298	16.950
13142	chr7	38972794	38975381	+	0	NA	Intergenic	BGLII_A|LTR|ERVK	-203783	NR_073038	100861861	Mm.60620	NR_073038		Gm21276	-	predicted gene, 21276	pseudo	19.612	6.876	2.263	9.211	3.547	1.468	4.335	6.650	11.515	14.489	13.349	3.754	5.871	12.628	10.478	13.112	6.715	12.424	2.439	5.049	3.558	1.488	0.488	0.361	11.521
12339	chr6	82602200	82603622	+	0	NA	Intergenic	L1ME4c|LINE|L1	49954	NM_025882	66979	Mm.195753	NM_025882	ENSMUSG00000030042	Pole4	2400007P05Rik|5830430F06Rik	polymerase (DNA-directed), epsilon 4 (p12 subunit)	protein-coding	6.669	10.458	3.954	7.380	4.510	2.655	9.491	8.311	4.398	8.231	4.602	4.435	7.587	8.140	9.489	11.449	8.004	7.605	4.155	2.531	2.619	5.833	3.374	3.849	10.543
13300	chr7	75693476	75696824	+	0	NA	intron (NM_029332, intron 14 of 36)	B1_Mus2|SINE|Alu	-153188	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.260	0.435	0.197	nan	0.085	0.036	0.301	0.324	0.292	0.254	0.125	0.207	0.203	0.255	0.220	nan	0.248	0.343	3.629	2.484	1.131	5.179	1.904	1.848	nan
5250	chr15	61970343	61971427	+	0	NA	Intergenic	Intergenic	-14456	NM_001177354	17869	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	4.006	5.502	2.024	3.736	2.007	0.968	2.935	4.726	3.152	3.994	2.753	3.417	2.013	4.197	3.888	3.380	1.734	3.213	0.789	0.466	0.226	1.995	0.481	0.347	3.700
11004	chr5	3341152	3344828	+	0	NA	promoter-TSS (NM_009873)	promoter-TSS (NM_009873)	-903	NM_009873	12571	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	5.538	16.240	4.342	7.714	1.255	0.862	3.557	3.911	3.677	6.434	7.716	4.582	3.108	4.471	6.255	4.746	2.127	5.071	1.075	0.808	1.227	2.101	0.481	0.656	6.190
9510	chr3	94451957	94454924	+	0	NA	Intergenic	Intergenic	10104	NM_030116	78523	Mm.218515	NM_030116	ENSMUSG00000028140	Mrpl9	8030480E20Rik|AA409733|C330013D18Rik|L9mt	mitochondrial ribosomal protein L9	protein-coding	6.235	0.595	0.232	4.797	4.232	1.682	9.067	7.280	4.288	5.525	nan	2.181	9.495	11.021	9.418	nan	5.910	8.746	3.155	1.939	1.718	4.171	2.755	1.391	10.911
2030	chr11	22561748	22564207	+	0	NA	Intergenic	Intergenic	50694	NM_153596	103765	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	nan	nan	0.756	0.968	1.149	0.650	0.812	0.022					0.465	1.127				nan	4.678	4.697	3.632	4.467	5.277	4.216	
2286	chr11	60922665	60927107	+	0	NA	intron (NR_027800, intron 1 of 1)	intron (NR_027800, intron 1 of 1)	6981	NR_027800	24082	Mm.46270	NM_025293	ENSMUSG00000042549	Map2k3os	F3-1|Gm16516|Gtlf3a	mitogen-activated protein kinase kinase 3, opposite strand	ncRNA	1.011	10.358	4.836	1.051	0.952	0.800	0.567	0.600	0.852	1.273	0.516	0.175	0.338	nan	0.808	1.325	0.551	1.009	nan	0.814	0.681	0.434	0.321	0.173	nan
15169	chr9	62349442	62351373	+	0	NA	intron (NM_009672, intron 1 of 6)	intron (NM_009672, intron 1 of 6)	9064	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	3.173	1.618	0.868	1.771	1.745	1.058	2.874	1.996	2.521	3.159	0.340	0.410	1.031	3.953	2.980	2.821	2.497	5.006	0.931	1.066	1.264	1.615	0.999	0.923	4.540
13226	chr7	56571311	56574121	+	0	NA	Intergenic	L1Md_T|LINE|L1	332945	NM_021879	18431	Mm.137052	NM_021879	ENSMUSG00000030450	Oca2	D7H15S12|D7Icr28RN|D7Nic1|p|p<cas>	oculocutaneous albinism II	protein-coding	2.845	1.092	0.696	2.530	2.244	1.958	2.943	2.903	2.639	3.029	1.607	0.744	4.413	3.477	4.122	4.599	4.845	3.805	1.185	1.224	0.757	0.875	1.201	0.689	5.781
15312	chr9	75288386	75289989	+	0	NA	exon (NM_001081322, exon 32 of 41)	exon (NM_001081322, exon 32 of 41)	-17101	NM_010313	14697	Mm.17604	NM_010313	ENSMUSG00000032192	Gnb5	GBS|Gbeta5|flr	guanine nucleotide binding protein (G protein), beta 5	protein-coding	5.630	7.524	2.370	5.388	3.560	2.737	4.028	4.596	2.551	6.535	2.999	2.715	2.938	4.741	4.878	6.913	2.938	5.645	4.263	3.055	4.615	4.826	3.793	3.582	nan
1595	chr10	92545530	92546608	+	0	NA	Intergenic	L1Md_A|LINE|L1	-170696	NR_046027	627800	Mm.391417	NR_046027	ENSMUSG00000098040	Gm20757	-	predicted gene, 20757	ncRNA	3.246	1.473	1.263	2.067	2.102	0.913	1.641	3.375	2.237	2.708	2.262	1.496	1.701	3.981	3.594	3.232	2.934	2.017	1.524	2.068	1.176	2.852	nan	0.845	1.862
14908	chr9	21563821	21569312	+	0	NA	intron (NM_153141, intron 1 of 14)	ID4_|SINE|ID	19672	NM_153141	59035	Mm.178115	NM_021531	ENSMUSG00000032185	Carm1	Prmt4	coactivator-associated arginine methyltransferase 1	protein-coding	6.086	2.894	1.952	4.656	3.629	2.891	4.917	5.532	5.235	7.709	1.731	1.400	6.335	9.927	5.265	7.474	6.141	6.817	2.064	1.852	2.280	1.697	2.551	2.671	9.433
8327	chr2	69928037	69930666	+	0	NA	intron (NM_001303033, intron 5 of 38)	intron (NM_001303033, intron 5 of 38)	32105	NM_177783	68795	Mm.314576	NM_177783	ENSMUSG00000044308	Ubr3	1110059H15Rik|4833421P10Rik|A130030D10Rik|AA409735|AA414972|AA422631|AI646861|AU016126|Zfp650|Znf650	ubiquitin protein ligase E3 component n-recognin 3	protein-coding	5.313	11.584	3.914	3.848	1.488	0.876	1.768	3.679	3.104	3.320	5.533	1.501	3.667	3.662	3.229	3.616	2.319	3.663	1.721	1.257	0.596	1.245	0.770	0.472	3.759
7519	chr19	7364214	7365760	+	0	NA	intron (NM_001033139, intron 5 of 5)	B1_Mus1|SINE|Alu	-18016	NR_045703	654802	Mm.414924	NR_045703		1700105P06Rik	-	RIKEN cDNA 1700105P06 gene	ncRNA	2.470	2.756	1.371	2.229	2.314	1.567	3.387	4.056	2.435	2.552	2.467	1.146	2.204	4.198	2.251	2.934	2.945	3.105	0.650	1.005	0.782	1.961	1.143	1.199	5.933
1750	chr10	115707414	115709210	+	0	NA	Intergenic	Intergenic	-108972	NM_001168680	216350	Mm.22270	NM_146010	ENSMUSG00000034127	Tspan8	C76990|E330007O21Rik|Tm4sf3	tetraspanin 8	protein-coding	5.669	0.687	0.364	4.425	1.287	1.081	3.478	2.784	2.475	2.653	1.203	0.537	2.848	3.231	5.261	5.179	3.415	3.029	0.520	0.624	0.273	0.858	0.297	0.183	5.116
14477	chr8	96447358	96449775	+	0	NA	Intergenic	(GA)n|Simple_repeat|Simple_repeat	97407	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0.994	0.775	0.403	0.596	0.158	0.052	0.643	1.132	0.346	0.434	0.778	0.346	0.810	0.717	1.101	1.265	0.649	1.157	1.957	0.916	0.461	3.952	1.397	0.951	1.281
5664	chr15	100085870	100090299	+	0	NA	intron (NR_037311, intron 2 of 3)	intron (NR_037311, intron 2 of 3)	49420	NM_001159361	239667	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	5.270	0.840	0.625	3.972	4.246	3.596	2.680	2.449	4.572	5.287	0.993	0.928	11.332	7.722	4.694	6.548	5.841	6.555	0.710	0.541	0.790	0.796	0.816	0.588	6.452
5971	chr16	30044768	30049291	+	0	NA	Intergenic	Intergenic	-7550	NR_045878	71528	Mm.297640	NR_045878		9030404E10Rik	-	RIKEN cDNA 9030404E10 gene	ncRNA	7.479	0.857	0.525	3.117	4.021	2.382	7.827	8.762	3.842	5.414	3.838	2.727	8.481	10.361	7.546	9.424	6.029	6.668	1.595	1.007	1.004	1.696	nan	1.994	8.219
1610	chr10	93470645	93471908	+	0	NA	intron (NM_001313897, intron 9 of 17)	intron (NM_001313897, intron 9 of 17)	-17492	NM_010401	15109	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	4.067	1.535	1.401	1.608	1.923	1.051	2.921	2.382	1.276	2.526	nan	0.370	2.721	3.235	2.299	3.026	2.667	2.358	nan	0.598	1.197	nan	0.628	0.502	3.202
4715	chr14	58322892	58324622	+	0	NA	Intergenic	Intergenic	251071	NM_013518	14180	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	2.292	nan	0.876	2.716	3.975	4.090	0.917	1.984	1.771	1.492	1.732	0.779	1.152	3.227	1.377	1.250	0.646	2.305	0.712	0.787	0.799	0.640	0.579	0.927	3.575
14589	chr8	111215368	111218341	+	0	NA	intron (NM_009149, intron 1 of 25)	RMER10A|LTR|ERVL	42348	NM_009149	20340	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	7.518	1.060	1.562	4.014	4.399	2.362	6.010	6.047	1.822	2.419	1.069	0.985	5.358	5.428	3.984	3.781	6.868	3.731	3.838	4.271	2.738	nan	6.124	4.038	6.319
779	chr1	158595917	158600457	+	0	NA	intron (NM_007495, intron 12 of 22)	intron (NM_007495, intron 12 of 22)	92562	NR_030441	735253		NR_030441	ENSMUSG00000070103	Mir488	Mirn488|mir-488|mmu-mir-488	microRNA 488	ncRNA	6.485	1.254	0.462	4.253	4.681	3.138	4.049	4.140	nan	3.108	1.768	1.357	4.928	4.416	3.765	nan	3.021	5.213	nan	1.031	0.862	1.501	nan	2.005	7.802
7268	chr18	57903037	57908589	+	0	NA	intron (NM_009194, intron 9 of 26)	intron (NM_009194, intron 9 of 26)	27135	NM_009194	20496	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	10.688	nan	0.727	nan	5.662	3.713	9.961	10.027	4.158	4.994	4.110	4.040	nan	7.926	6.567	6.512	5.700	5.664	nan	1.264	0.751	nan	1.188	1.186	8.234
10070	chr4	47486378	47488972	+	0	NA	Intergenic	Intergenic	13014	NM_024171	66212	Mm.20188	NM_024171	ENSMUSG00000053317	Sec61b	1190006C12Rik|AI326121|AW122942	Sec61 beta subunit	protein-coding	6.991	9.006	2.893	7.008	3.141	1.980	5.426	5.818	4.737	6.909	5.703	2.715	4.738	6.376	6.602	7.098	4.262	5.881	6.083	3.665	3.310	4.601	4.315	4.342	8.925
9546	chr3	95789276	95795675	+	0	NA	intron (NM_001081293, intron 1 of 10)	intron (NM_001081293, intron 1 of 10)	26478	NM_001081293	75137	Mm.196275	NM_028328	ENSMUSG00000028106	Rprd2	2810036A19Rik|4930535B03Rik|6720469I21Rik|AL022841|AL022940|AU021304|BB077382|mKIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding	3.864	14.552	5.574	3.932	1.670	1.020	2.067	1.333	2.335	2.717	nan	0.970	1.508	2.391	2.927	nan	1.651	2.990	2.364	1.580	1.253	2.659	1.469	0.811	4.227
12951	chr7	17641061	17650115	+	0	NA	Intergenic	MERVL-int|LTR|ERVL	-26725	NR_002857	232919	Mm.153893	NR_002857	ENSMUSG00000108558	Psg-ps1	AV036018|Cea-6|Cea6	pregnancy specific glycoprotein pseudogene 1	pseudo	9.687	6.556	3.148	9.819	5.602	3.070	9.897	15.654	6.675	9.180	2.797	2.747	8.577	12.183	6.625	7.151	8.415	8.167	2.452	1.378	1.260	2.347	3.141	2.713	8.065
12326	chr6	72487668	72489207	+	0	NA	Intergenic	Intergenic	-48879	NM_145569	232087	Mm.29815	NM_145569	ENSMUSG00000053907	Mat2a	D630045P18Rik	methionine adenosyltransferase II, alpha	protein-coding	5.527	6.737	1.524	6.561	2.981	2.041	4.734	6.400	2.653	3.444	3.427	2.132	5.535	7.200	6.981	9.152	5.013	6.843	4.889	1.541	1.836	5.782	3.542	2.612	8.755
9319	chr3	55343865	55347091	+	0	NA	intron (NM_019978, intron 3 of 16)	intron (NM_019978, intron 3 of 16)	102952	NM_001195538	13175	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.524	0.607	0.604	nan	0.382	0.278	0.670	0.377	0.407	0.408	0.339	0.148	0.230	0.550	nan	nan	0.920	nan	5.685	4.562	1.693	6.009	2.657	1.757	0.935
14353	chr8	77615632	77619469	+	0	NA	Intergenic	IMPB_01|Satellite|Satellite	-6622	NR_045467	67357	Mm.71129	NR_045467	ENSMUSG00000086781	1700092C02Rik	-	RIKEN cDNA 1700092C02 gene	ncRNA	7.148	nan	1.907	4.162	6.100	4.685	nan	6.427	nan	4.724	3.067	1.741	4.906	6.860	4.967	6.180	6.122	4.675	2.176	2.105	1.945	nan	1.962	2.001	nan
697	chr1	138303938	138307533	+	0	NA	Intergenic	L1Md_T|LINE|L1	31997	NM_177397	338375	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0.672	0.401	0.286	nan	0.231	0.176	0.409	0.506	0.419	0.453	5.691	2.774	0.417	nan	0.355	nan	0.617	0.569	0.522	0.389	0.068	0.530	0.292	0.266	nan
981	chr1	184437038	184445034	+	0	NA	Intergenic	Intergenic	116655	NR_040472	73590	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	4.109	1.081	0.601	3.390	3.220	2.126	2.399	3.071	3.336	3.268	1.181	1.126	3.577	3.892	3.173	nan	3.077	5.341	3.479	2.669	2.634	1.830	4.933	4.972	4.157
3001	chr11	116285042	116286556	+	0	NA	TTS (NM_001347636)	TTS (NM_001347636)	4860	NM_010254	14428	Mm.57149	NM_010254	ENSMUSG00000020793	Galr2	mGalR	galanin receptor 2	protein-coding	5.901	16.259	9.973	6.032	4.189	2.506	nan	2.852	3.310	3.759	2.350	1.924	1.414	2.756	2.556	2.508	1.626	3.764	1.220	nan	1.906	0.874	1.346	0.540	2.532
6559	chr17	34278075	34285048	+	0	NA	Intergenic	Intergenic	6210	NM_010378	14960	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	nan	10.980	7.000	2.417	1.699	1.144	2.995	1.994	1.813	2.271	0.699	0.387	2.122	2.704	2.616	3.964	2.606	2.020	0.654	1.189	1.278	0.374	0.717	0.566	4.054
12064	chr6	15697269	15698680	+	0	NA	Intergenic	Intergenic	-22687	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	2.002	10.507	7.108	1.464	1.829	0.883	1.253	0.788	1.458	1.550	0.657	0.704	1.082	1.392	1.548	nan	2.109	2.194	0.707	1.740	0.597	0.660	0.741	0.166	1.281
1010	chr1	189114959	189118917	+	0	NA	Intergenic	B3|SINE|B2	-109098	NM_172650	226823	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	4.737	0.895	0.364	1.096	1.112	0.585	4.353	2.197	2.723	3.357	0.542	0.328	5.262	2.748	3.364	6.001	3.249	5.049	0.603	0.421	0.093	0.661	0.391	0.117	3.479
8377	chr2	75639411	75641898	+	0	NA	Intergenic	MMVL30-int|LTR|ERV1	-18605	NM_146130	229279	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	7.147	1.389	0.641	nan	2.618	2.075	8.558	5.028	3.436	3.790	2.958	1.857	5.727	5.823	nan	7.651	12.421	3.918	1.376	2.169	2.658	1.359	1.671	1.653	8.492
7309	chr18	62112242	62115229	+	0	NA	Intergenic	B4A|SINE|B4	66246	NM_007420	11555	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	3.684	nan	0.415	6.650	2.099	0.773	2.376	4.251	2.977	2.780	2.239	1.017	nan	1.979	2.275	3.304	1.498	3.261	nan	0.809	0.398	nan	0.275	0.119	nan
10036	chr4	45373414	45375260	+	0	NA	3' UTR (NM_153167, exon 7 of 7)	3' UTR (NM_153167, exon 7 of 7)	32236	NM_153167	242418	Mm.317668	NM_153167	ENSMUSG00000035572	Dcaf10	AA959934|Wdr32	DDB1 and CUL4 associated factor 10	protein-coding	3.880	nan	0.585	1.897	2.299	1.917	3.198	2.888	2.811	2.898	0.818	0.551	2.798	4.351	2.771	3.590	3.709	3.200	1.092	0.546	0.734	nan	0.866	0.880	2.077
3310	chr12	41472062	41474790	+	0	NA	intron (NM_001271708, intron 1 of 2)	intron (NM_001271708, intron 1 of 2)	12631	NM_001271708	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	4.666	nan	0.247	1.709	0.548	0.433	1.894	1.621	2.636	2.368	0.316	0.324	4.298	3.453	4.340	5.680	4.123	4.119	nan	0.262	0.428	0.914	0.607	0.343	6.464
9174	chr3	21988186	21994233	+	0	NA	Intergenic	ID_B1|SINE|B4	-85443	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	4.374	nan	1.893	3.251	4.190	2.470	6.033	5.933	3.796	3.219	2.929	3.079	4.518	4.809	4.345	4.801	3.595	4.904	2.069	1.838	1.205	2.566	1.973	1.714	3.648
13649	chr7	120637200	120649832	+	0	NA	intron (NM_025899, intron 6 of 13)	intron (NM_025899, intron 6 of 13)	8327	NM_025899	67003	Mm.334206	NM_025899	ENSMUSG00000030884	Uqcrc2	1500004O06Rik	ubiquinol cytochrome c reductase core protein 2	protein-coding	1.623	1.182	1.018	1.109	1.369	0.998	3.025	4.438	3.629	2.024	7.401	5.507	3.213	nan	2.238	2.314	2.380	2.797	1.312	1.141	0.936	1.007	0.836	0.661	0.978
11948	chr5	147048702	147049782	+	0	NA	intron (NM_080795, intron 1 of 9)	intron (NM_080795, intron 1 of 9)	27330	NM_080795	140887	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	3.016	0.825	1.271	nan	4.074	2.600	0.867	2.947	3.611	3.233	1.971	1.430	2.051	3.507	2.138	1.762	2.446	3.165	2.420	2.692	1.307	3.403	3.297	2.448	1.721
4077	chr13	46830906	46832325	+	0	NA	intron (NM_010617, intron 5 of 37)	ORR1A3|LTR|ERVL-MaLR	98103	NM_010617	16553	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	9.246	15.981	6.257	8.599	5.510	1.742	3.813	5.358	5.605	6.592	5.051	2.579	5.493	6.527	6.927	7.104	3.250	8.008	2.878	2.729	0.972	3.881	3.032	1.615	8.192
4279	chr13	91310139	91312436	+	0	NA	Intergenic	Tigger13a|DNA|TcMar-Tigger	76798	NR_045161	320297	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	0.600	0.724	0.459	0.652	0.781	0.674	0.234	0.533	0.916	0.557	1.208	0.990	0.301	0.529	0.389	0.636	0.632	0.901	2.021	3.280	2.814	3.316	1.594	1.211	0.480
4083	chr13	47064832	47068249	+	0	NA	intron (NM_172262, intron 11 of 20)	PB1D10|SINE|Alu	23041	NM_172262	218214	Mm.31259	NM_172262	ENSMUSG00000038080	Kdm1b	4632428N09Rik|AI482520|Aof1	lysine (K)-specific demethylase 1B	protein-coding	nan	0.602	0.716	nan	2.767	2.481	7.682	10.082	5.456	4.866	1.591	1.402	6.156	9.816	7.479	7.914	7.392	6.146	0.681	nan	1.208	0.606	1.745	1.096	7.697
7925	chr2	3663108	3671999	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-45905	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	5.315	7.059	3.475	2.754	1.654	0.681	6.503	9.889	3.195	3.023	3.818	3.297	6.930	5.834	5.663	8.963	8.313	3.721	1.773	2.165	1.712	2.390	2.134	1.552	7.770
12634	chr6	117854833	117860560	+	0	NA	Intergenic	B1_Mur2|SINE|Alu	-5381	NM_008616	22685	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	6.238	12.007	5.859	8.478	6.889	4.888	12.448	9.521	3.682	6.810	4.654	2.822	9.514	10.743	9.765	11.283	7.623	6.389	4.636	3.348	3.429	4.361	nan	4.240	10.942
11764	chr5	131942238	131943952	+	0	NA	intron (NM_177047, intron 4 of 18)	intron (NM_177047, intron 4 of 18)	62826	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA	3.385	0.385	0.097	1.234	1.589	0.553	4.069	4.248	2.800	4.463	0.833	0.864	4.265	5.352	3.119	4.946	4.119	3.256	nan	0.351	0.071	0.452	nan	0.173	2.661
10832	chr4	141549109	141550705	+	0	NA	Intergenic	B1_Mur2|SINE|Alu	3745	NR_030695	320456	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	3.456	2.355	1.808	0.703	1.767	1.220	3.220	4.638	nan	1.274	2.690	1.742	2.272	3.861	1.417	1.338	0.974	nan	0.726	1.035	0.885	0.996	nan	1.632	1.717
8714	chr2	137236240	137241166	+	0	NA	Intergenic	Intergenic	-122183	NM_013822	16449	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	2.917	0.505	0.270	1.777	2.914	1.037	4.753	5.673	3.168	2.705	3.386	1.633	5.248	3.993	5.680	5.411	3.982	4.766	0.646	0.383	0.199	0.431	0.231	0.174	2.129
3739	chr12	112680964	112682822	+	0	NA	3' UTR (NM_001100460, exon 2 of 2)	3' UTR (NM_001100460, exon 2 of 2)	3053	NM_001100460	382639	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	6.060	4.025	0.623	5.565	1.339	0.333	5.098	4.347	2.104	3.129	6.542	1.914	1.601	3.951	3.300	3.962	1.159	3.763	0.927	0.552	0.463	1.337	0.371	0.207	6.876
321	chr1	75279971	75284207	+	0	NA	Intergenic	RMER19C|LTR|ERVK	-3674	NM_009049	19711	Mm.4032	NM_009049	ENSMUSG00000033061	Resp18	AI851012	regulated endocrine-specific protein 18	protein-coding	6.224	0.564	0.331	3.998	5.650	3.947	3.380	3.752	6.434	8.524	0.677	1.204	5.156	7.734	2.955	nan	4.702	nan	6.368	nan	2.272	3.684	8.455	6.862	nan
5700	chr15	101350971	101355111	+	0	NA	intron (NM_028770, intron 4 of 8)	intron (NM_028770, intron 4 of 8)	-16311	NR_035462	100316694		NR_035462	ENSMUSG00000088459	Mir1941	mmu-mir-1941	microRNA 1941	ncRNA	1.369	0.561	0.310	0.631	0.394	0.397	3.356	4.904	1.635	0.755	8.065	3.648	3.115	1.266	1.253	nan	1.076	1.246	1.009	0.695	0.468	0.624	0.565	0.473	0.610
3209	chr12	17320319	17332184	+	0	NA	Intergenic	Intergenic	-1521	NM_001159632	68775	Mm.178798	NM_133699	ENSMUSG00000020566	Atp6v1c2	1110038G14Rik	ATPase, H+ transporting, lysosomal V1 subunit C2	protein-coding	6.831	0.949	0.452	4.042	3.561	2.730	5.302	4.623	4.900	7.183	2.256	1.058	7.296	8.109	5.323	7.979	8.203	4.470	0.677	0.529	0.615	0.575	0.839	0.643	10.640
14017	chr8	11999540	12003519	+	0	NA	Intergenic	Intergenic	161008	NM_029326	75528	Mm.440342	NM_029326	ENSMUSG00000031512	Tex29	1700018L24Rik	testis expressed 29	protein-coding	0.895	0.413	0.520	0.942	0.670	0.348	0.619	1.681	0.830	0.770	0.364	0.906	0.335	0.482	0.774	0.771	1.100	0.865	4.012	3.272	2.037	6.172	2.894	2.634	0.697
10090	chr4	53524082	53529679	+	0	NA	intron (NM_133891, intron 4 of 15)	intron (NM_133891, intron 4 of 15)	86467	NM_133891	100434	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	2.334	2.673	1.683	2.141	1.365	0.578	nan	1.156	1.666	1.930	1.611	1.002	0.940	1.950	1.580	1.669	1.210	1.701	3.898	4.066	2.594	5.279	2.361	1.317	1.951
11421	chr5	91327270	91330186	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-45652	NR_040428	100503265	Mm.125059	NR_040428	ENSMUSG00000107198	Gm19619	-	predicted gene, 19619	ncRNA	7.783	1.130	0.946	3.490	3.207	1.930	7.398	6.203	3.966	3.623	5.671	3.064	6.072	8.020	7.748	6.313	3.166	7.306	1.376	0.546	0.598	1.424	0.403	0.326	6.752
1079	chr10	6977497	6980158	+	0	NA	intron (NM_001033391, intron 2 of 7)	intron (NM_001033391, intron 2 of 7)	1454	NM_001347225	320495	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	4.221	0.546	0.302	6.677	2.026	1.578	4.706	0.459	4.877	9.669	2.502	0.322	4.824	5.988	6.695	8.850	7.007	8.333	0.566	0.581	0.472	0.961	0.769	0.570	13.064
7154	chr18	36534030	36538695	+	0	NA	intron (NM_172830, intron 15 of 20)	intron (NM_172830, intron 15 of 20)	8210	NM_001271544	240215	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	3.099	0.671	0.406	1.566	2.708	2.299	4.430	4.591	2.661	2.222	0.773	1.974	3.016	3.664	2.910	nan	3.355	4.060	2.196	2.072	2.164	2.161	1.849	1.868	3.607
14140	chr8	35591754	35597780	+	0	NA	intron (NM_001081279, intron 1 of 2)	intron (NM_001081279, intron 1 of 2)	-5747	NR_040376	100504714	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	4.679	0.798	0.494	1.185	2.781	1.769	4.780	7.252	3.805	3.532	2.106	2.436	6.981	6.141	5.247	6.526	4.577	4.023	0.789	0.823	0.468	1.560	0.749	0.494	nan
2422	chr11	72297541	72300534	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	-2592	NM_001291153	327959	Mm.291131	NM_001037713	ENSMUSG00000040483	Xaf1	Fbox39	XIAP associated factor 1	protein-coding	2.766	1.372	0.369	4.535	1.901	1.291	2.659	3.105	4.178	3.390	2.810	2.254	3.083	4.505	4.119	4.454	2.251	5.282	4.099	1.403	1.049	2.265	nan	2.038	4.660
5977	chr16	30393519	30395619	+	0	NA	Intergenic	ID_B1|SINE|B4	-6039	NM_001128096	224088	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	3.478	0.863	1.118	1.804	2.426	1.780	3.001	3.764	2.203	1.935	1.196	1.705	2.907	4.115	2.975	3.865	2.786	3.575	0.856	1.303	1.234	0.845	nan	0.967	2.681
14963	chr9	36981710	36987930	+	0	NA	intron (NM_148950, intron 2 of 11)	intron (NM_148950, intron 2 of 11)	141161	NM_183171	235180	Mm.5264	NM_183171	ENSMUSG00000032118	Fez1	UNC-76|UNC76	fasciculation and elongation protein zeta 1 (zygin I)	protein-coding	0.508	0.699	0.445	0.637	0.155	0.099	0.390	0.364	0.274	0.455	0.259	0.251	0.150	0.329	0.445	0.591	nan	0.712	nan	4.049	2.172	6.845	3.451	2.228	0.641
1590	chr10	90891527	90896209	+	0	NA	intron (NM_001347053, intron 1 of 8)	intron (NM_001347053, intron 1 of 8)	64025	NM_001347053	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	nan	0.467	0.302	0.596	0.362	0.386	1.477	0.801	1.612	1.404	0.364	0.342	1.441	1.469	1.626	1.812	1.258	nan	7.097	4.475	2.783	4.359	6.926	6.138	0.686
14672	chr8	122334400	122344070	+	0	NA	Intergenic	Intergenic	21511	NM_133202	170732	Mm.154808	NM_133202	ENSMUSG00000039079	Trhr2	TRH-R2	thyrotropin releasing hormone receptor 2	protein-coding	4.940	7.414	3.583	2.855	2.115	1.536	5.316	8.746	3.041	2.764	6.126	3.726	5.009	4.984	5.821	6.614	5.036	4.341	0.788	1.260	1.302	1.052	0.439	0.482	4.841
14767	chr8	126763005	126767384	+	0	NA	Intergenic	B4A|SINE|B4	-171758	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	2.741	2.943	1.016	3.473	2.384	1.142	4.544	5.081	2.906	2.846	2.584	1.943	3.737	3.899	nan	5.938	2.882	3.735	nan	0.777	0.482	nan	0.447	nan	6.226
1652	chr10	95239508	95244815	+	0	NA	intron (NM_009950, intron 2 of 2)	B3A|SINE|B2	81548	NM_001330138	12905	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	8.440	1.637	0.843	4.203	6.517	3.331	4.895	7.494	4.980	7.064	3.916	1.439	7.065	8.028	6.348	6.494	6.861	5.351	nan	1.855	0.877	nan	1.365	0.952	5.805
12908	chr7	4787114	4788793	+	0	NA	intron (NM_029384, intron 1 of 1)	intron (NM_029384, intron 1 of 1)	1607	NM_029384	664968	Mm.292837	NM_029384	ENSMUSG00000030431	Tmem238	2210411K11Rik	transmembrane protein 238	protein-coding	0.668	1.094	0.921	2.200	2.265	1.586	4.190	3.071	0.889	2.932	0.249	0.699	2.554	4.835	3.168	1.408	1.029	1.395	4.415	5.343	5.711	5.483	6.367	6.002	3.295
4816	chr14	70555945	70562228	+	0	NA	intron (NM_021877, intron 4 of 19)	intron (NM_021877, intron 4 of 19)	5030	NM_021877	15460	Mm.7598	NM_021877	ENSMUSG00000022096	Hr	ALUNC|AU|N|ba|bldy|hr|rh|rh-bmh|rhino	hairless	protein-coding	6.974	3.463	1.536	5.674	2.608	1.596	7.501	8.250	4.988	7.302	4.433	2.284	5.973	9.064	6.096	9.018	4.022	7.052	1.598	nan	1.209	2.430	1.314	0.986	12.491
15452	chr9	103904336	103905764	+	0	NA	Intergenic	Intergenic	-97494	NM_172460	74025	Mm.479273	NM_028721	ENSMUSG00000032558	Nphp3	3632410F03Rik|AI550417|C230078J01|D330020E01Rik|pcy	nephronophthisis 3 (adolescent)	protein-coding	6.075	4.976	1.048	5.741	2.262	1.564	4.981	5.975	nan	6.785	5.323	2.384	3.813	7.465	4.658	7.527	3.626	nan	3.070	3.250	2.039	4.043	3.811	3.094	10.506
9259	chr3	41324830	41327664	+	0	NA	Intergenic	Intergenic	166952	NR_040385	78706	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	5.761	0.786	0.314	2.914	3.227	1.560	5.544	7.298	nan	5.706	7.945	3.288	7.702	9.486	7.575	7.222	6.113	5.737	nan	0.464	0.303	nan	0.777	0.440	5.234
9668	chr3	106002338	106004443	+	0	NA	intron (NM_001200028, intron 1 of 5)	L1_Mus3|LINE|L1	-1893	NM_029604	100503311	Mm.386825	NM_029604	ENSMUSG00000010136	Pifo	1700027A23Rik	primary cilia formation	protein-coding	3.267	0.943	0.623	3.120	4.193	3.117	4.708	2.059	5.137	3.196	2.139	1.269	8.242	6.914	3.802	5.385	5.248	3.313	0.965	0.763	0.535	0.274	0.297	0.500	2.606
760	chr1	155949447	155951781	+	0	NA	intron (NM_001039184, intron 6 of 37)	Lx4B|LINE|L1	22641	NM_001039184	74081	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	3.679	14.697	6.905	4.881	2.115	0.900	1.005	3.287	3.014	2.727	1.874	1.006	1.190	1.758	2.237	2.293	1.846	2.942	2.638	2.692	1.223	5.815	nan	0.648	2.097
15824	chrX	137199402	137200402	+	0	NA	Intergenic	L1Md_A|LINE|L1	-79576	NM_007957	13984	Mm.8017	NM_007957	ENSMUSG00000023443	Esx1	Spx1	extraembryonic, spermatogenesis, homeobox 1	protein-coding	4.275	5.352	1.497	8.281	3.497	3.718	4.887	3.753	3.729	11.105	6.487	2.221	2.994	3.169	4.685	5.700	3.098	7.249	3.149	1.270	3.866	4.802	1.966	4.800	11.739
863	chr1	172321854	172326327	+	0	NA	intron (NM_008429, intron 3 of 3)	L3|LINE|CR1	5173	NM_008429	16524	Mm.261168	NM_008429	ENSMUSG00000038026	Kcnj9	1700085N21Rik|Girk3|Kir3.3|mbGIRK3	potassium inwardly-rectifying channel, subfamily J, member 9	protein-coding	5.892	0.750	0.263	4.382	4.169	2.231	5.478	3.609	nan	7.460	3.824	3.989	7.124	8.174	4.340	7.484	5.281	7.048	2.222	1.518	1.064	nan	nan	1.331	5.466
5459	chr15	80994177	80996367	+	0	NA	intron (NM_134091, intron 1 of 21)	B1_Mus1|SINE|Alu	17507	NM_134091	105835	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	4.913	nan	0.692	nan	1.339	0.887	4.970	6.917	3.811	2.933	nan	3.334	7.477	5.714	6.807	4.963	5.803	5.536	1.266	0.486	0.424	nan	0.554	0.568	3.506
7815	chr19	45861399	45866886	+	0	NA	intron (NM_198296, intron 23 of 25)	intron (NM_198296, intron 23 of 25)	-48079	NM_145703	80906	Mm.213204	NM_030716	ENSMUSG00000025221	Kcnip2	KChIP2	Kv channel-interacting protein 2	protein-coding	3.804	1.672	1.853	nan	4.971	4.912	5.130	7.593	3.420	3.149	3.331	3.593	3.514	4.691	2.887	3.411	4.227	3.398	0.749	0.942	1.582	0.571	1.583	1.911	3.228
13341	chr7	86039897	86042398	+	0	NA	Intergenic	L1_Mur2|LINE|L1	-79665	NM_001105187	546980	Mm.469905	NM_001105187	ENSMUSG00000090774	Vmn2r74	EG546980	vomeronasal 2, receptor 74	protein-coding	6.494	6.609	2.736	5.645	3.591	2.710	4.737	6.133	nan	5.925	5.208	4.452	4.064	5.965	5.378	6.657	5.170	6.482	2.749	1.859	2.446	nan	2.400	1.757	7.955
4975	chr14	121569142	121583752	+	0	NA	intron (NM_001347596, intron 44 of 52)	intron (NM_001347596, intron 44 of 52)	-71193	NM_053079	56643	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	2.557	0.697	0.436	2.710	1.861	1.021	1.693	2.739	2.227	2.678	1.248	0.729	1.970	3.506	nan	2.850	1.282	3.243	4.863	2.884	2.216	7.791	4.367	2.962	4.075
2469	chr11	75359945	75366848	+	0	NA	intron (NM_001102611, intron 2 of 10)	RLTR6-int|LTR|ERV1	14963	NM_001102611	319822	Mm.340377	NM_177009	ENSMUSG00000018809	Smyd4	G430029E23Rik	SET and MYND domain containing 4	protein-coding	6.395	2.705	1.246	5.995	5.088	2.573	nan	2.802	3.693	4.687	2.537	1.804	1.837	4.321	3.774	4.868	2.985	6.013	2.465	2.503	nan	4.174	1.953	1.409	3.755
3317	chr12	52790697	52796801	+	0	NA	intron (NM_198111, intron 1 of 13)	(TTTC)n|Simple_repeat|Simple_repeat	94366	NM_198111	238161	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	12.352	8.214	2.871	10.748	7.387	6.720	10.402	8.794	6.319	10.611	7.371	4.653	11.268	11.198	10.164	10.750	10.253	10.281	3.110	2.168	2.810	3.466	1.881	2.474	13.927
1745	chr10	114749478	114753743	+	0	NA	intron (NM_146241, intron 2 of 18)	intron (NM_146241, intron 2 of 18)	49760	NM_146241	237553	Mm.445550	NM_146241	ENSMUSG00000050663	Trhde	9330155P21Rik	TRH-degrading enzyme	protein-coding	11.847	12.988	4.606	10.234	6.566	4.056	8.198	9.420	7.301	11.284	7.131	4.082	9.827	13.456	11.483	11.943	9.027	10.457	4.727	2.920	2.757	5.495	3.308	3.769	14.328
12606	chr6	114787995	114792795	+	0	NA	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	131357	NM_177683	232334	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	4.219	2.983	1.118	3.091	1.302	0.522	3.199	4.143	3.390	2.954	3.448	1.628	2.599	3.192	3.990	6.712	2.500	3.981	0.828	0.474	0.682	0.904	nan	0.262	6.124
2594	chr11	87280480	87282017	+	0	NA	intron (NR_106195, intron 6 of 8)	(A)n|Simple_repeat|Simple_repeat	77746	NM_177167	320472	Mm.341988	NM_177167	ENSMUSG00000046442	Ppm1e	AW049266|B930008A12Rik|POPX1|PP2CH|mKIAA1072	protein phosphatase 1E (PP2C domain containing)	protein-coding	5.282	8.304	4.632	3.740	5.187	2.667	4.127	3.491	2.342	3.193	1.470	1.171	3.740	8.134	4.581	5.958	5.413	3.202	3.697	7.062	5.255	4.831	9.677	9.417	nan
14942	chr9	32256485	32259106	+	0	NA	intron (NM_001195632, intron 21 of 21)	intron (NM_001195632, intron 21 of 21)	33546	NM_177379	330914	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.723	0.941	1.037	0.599	0.373	0.192	0.487	0.263	0.396	0.340	0.316	0.395	0.274	0.300	0.295	nan	0.519	0.526	7.311	5.145	5.051	6.368	5.545	4.910	0.565
3966	chr13	36266443	36267946	+	0	NA	intron (NM_001039189, intron 3 of 5)	intron (NM_001039189, intron 3 of 5)	149551	NM_001039189	69955	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	2.056	nan	0.366	2.179	0.823	0.707	2.385	2.001	2.740	2.404	1.612	1.197	3.784	4.164	2.392	3.775	2.116	3.301	0.781	0.584	0.121	0.733	0.467	0.138	2.353
3702	chr12	107022193	107024275	+	0	NA	Intergenic	Intergenic	-306910	NR_015512	71033	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA	9.356	8.702	3.270	6.486	4.473	2.820	6.785	nan	nan	10.289	5.008	2.852	6.793	8.245	8.215	9.796	6.771	6.646	6.622	3.871	3.339	4.939	4.765	5.697	13.690
7743	chr19	37280606	37284054	+	0	NA	intron (NM_031156, intron 18 of 23)	intron (NM_031156, intron 18 of 23)	-18235	NR_040298	77059	Mm.251476	NR_040298		4931408D14Rik	-	RIKEN cDNA 4931408D14 gene	ncRNA	8.626	7.463	2.341	9.760	5.551	4.212	7.075	8.003	5.978	13.248	4.490	3.884	8.147	9.432	8.718	9.960	9.370	10.059	3.665	3.044	2.736	5.165	5.579	4.396	14.299
2124	chr11	46376973	46379077	+	0	NA	intron (NM_010583, intron 1 of 16)	L1ME4b|LINE|L1	11490	NM_001281968	16428	Mm.339927	NM_010583	ENSMUSG00000020395	Itk	Emt|Tcsk|Tsk	IL2 inducible T cell kinase	protein-coding	2.978	2.024	0.669	1.864	0.840	0.060	2.446	1.276	2.238	2.237	0.576	0.387	2.108	2.914	2.416	5.219	2.252	2.668	nan	0.643	0.058	nan	nan	0.202	3.962
11245	chr5	54347307	54349183	+	0	NA	Intergenic	Intergenic	-1747	NR_038045	330086	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13|ENSMUSG00000072936	predicted gene 10440	ncRNA	1.926	0.525	0.208	1.831	1.872	0.791	3.094	2.907	2.326	2.174	3.803	3.601	3.509	3.485	3.673	3.521	3.463	3.150	1.545	1.302	0.706	2.500	1.642	1.083	3.629
6104	chr16	45951484	45954113	+	0	NA	Intergenic	Intergenic	57615	NM_001134480	433022	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	9.540	0.529	0.150	2.317	1.385	0.777	7.455	11.736	6.649	7.921	2.912	2.197	14.090	12.109	8.873	12.212	5.358	10.041	0.864	0.344	0.173	0.642	0.487	0.308	8.243
6755	chr17	56720185	56728279	+	0	NA	TTS (NM_027244)	TTS (NM_027244)	6470	NM_027244	69875	Mm.279823	NM_027244	ENSMUSG00000002379	Ndufa11	2010012C24Rik|AV006275|B14.7	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 11	protein-coding	nan	nan	2.562	5.504	3.664	2.118	4.929	4.500	3.615	5.977	3.310	2.309	4.176	6.818	5.921	6.893	4.362	5.012	3.555	2.019	1.571	3.931	2.127	2.166	10.043
282	chr1	72464574	72467548	+	0	NA	intron (NM_001045533, intron 1 of 3)	intron (NM_001045533, intron 1 of 3)	70503	NM_001045533	381270	Mm.337023	NM_001045533	ENSMUSG00000039372	March4	BC056494|mKIAA1399	membrane-associated ring finger (C3HC4) 4	protein-coding	3.580	0.561	0.486	1.051	0.793	0.277	1.559	2.319	1.529	1.816	7.668	4.103	2.224	nan	1.635	3.024	3.115	nan	4.418	1.683	0.954	5.514	1.891	1.112	1.488
7594	chr19	12615097	12616676	+	0	NA	intron (NM_001013762, intron 2 of 5)	L1M3|LINE|L1	15870	NM_001013762	240549	Mm.302458	NM_001013762	ENSMUSG00000071633	Gm4952	EG240549	predicted gene 4952	protein-coding	4.627	5.288	3.864	3.062	5.473	3.121	1.102	0.730	nan	1.510	0.587	0.245	0.846	4.340	1.782	2.372	2.478	2.029	0.734	2.469	1.164	0.365	0.818	0.583	5.777
14555	chr8	108698899	108705504	+	0	NA	Intergenic	Intergenic	-12443	NM_007496	11906	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	5.587	0.873	0.302	1.622	1.778	1.146	3.829	6.518	2.381	2.215	2.109	1.846	5.964	4.381	4.390	6.181	8.232	4.678	1.070	1.134	0.915	nan	0.783	0.644	4.226
3622	chr12	96981893	96983840	+	0	NA	Intergenic	Lx2|LINE|L1	-935644	NR_103800	69423	Mm.46121	NM_027076		1700019M22Rik	-	NFX-like protein	pseudo	5.015	0.581	0.268	1.088	0.344	0.178	1.419	1.482	1.856	1.660	4.611	1.027	1.973	1.629	2.328	4.402	1.785	2.298	0.428	0.347	0.118	0.763	0.135	0.099	3.487
11118	chr5	31869699	31875126	+	0	NA	intron (NM_144541, intron 6 of 11)	intron (NM_144541, intron 6 of 11)	174362	NM_144541	107976	Mm.482126	NM_144541	ENSMUSG00000052139	Bre	6030405P19Rik|AI429776|B830038C02Rik	brain and reproductive organ-expressed protein	protein-coding	5.410	1.846	0.701	nan	7.783	5.119	7.876	3.335	5.500	5.177	2.139	2.160	4.483	8.437	7.498	6.493	4.263	9.189	0.927	1.355	1.336	0.693	0.704	0.797	5.203
5489	chr15	82624378	82627592	+	0	NA	Intergenic	Intergenic	-5078	NM_145474	223706	Mm.436843	NM_145474	ENSMUSG00000094559	Cyp2d34	-	cytochrome P450, family 2, subfamily d, polypeptide 34	protein-coding	nan	nan	0.564	nan	0.149	0.224	nan	5.740	0.321	nan	nan	0.231	0.256	nan	0.974	0.636	nan	0.924	0.661	0.373	0.191	nan	0.422	0.266	0.501
13926	chr7	150809493	150818320	+	0	NA	Intergenic	Intergenic	5499071	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	5.517	nan	2.603	nan	4.200	2.878	5.686	6.373	nan	2.775	5.398	4.190	3.757	5.163	4.277	2.303	3.647	2.382	1.184	1.829	1.702	0.591	nan	0.699	nan
12086	chr6	22983591	22985215	+	0	NA	intron (NM_001081306, intron 8 of 29)	intron (NM_001081306, intron 8 of 29)	108901	NM_001081306	19283	Mm.41639	NM_011219	ENSMUSG00000068748	Ptprz1	AI850339|DSD-1-PG|PTPbeta|PTPzeta|Ptprz|Ptpz|R-PTP-zeta|RPTPz|Rptpbeta	protein tyrosine phosphatase, receptor type Z, polypeptide 1	protein-coding	6.084	nan	0.350	1.232	0.363	0.077	4.341	2.575	3.460	3.945	1.352	1.242	7.426	4.225	7.319	9.187	7.254	5.430	0.546	0.366	0.075	0.969	0.338	0.153	9.530
989	chr1	185862601	185873663	+	0	NA	intron (NR_030555, intron 4 of 6)	ID4|SINE|ID	249178	NM_146106	226791	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	1.694	9.241	4.934	1.740	1.252	0.584	0.731	0.668	1.134	1.174	1.007	0.884	0.719	1.200	1.077	nan	0.997	1.985	1.178	1.213	0.763	1.549	0.769	0.400	1.482
6668	chr17	46208372	46212877	+	0	NA	intron (NM_028198, intron 5 of 31)	intron (NM_028198, intron 5 of 31)	7769	NM_028198	72322	Mm.275039	NM_028198	ENSMUSG00000067150	Xpo5	2410004H11Rik|2700038C24Rik|AI648907|AW549301|Exp5|RanBp21|mKIAA1291	exportin 5	protein-coding	3.106	3.329	1.065	3.229	2.215	0.923	5.031	4.461	2.444	2.573	4.263	2.539	2.901	nan	3.761	5.899	3.414	3.173	1.715	1.189	0.797	3.233	1.277	0.935	4.187
7585	chr19	11891803	11894416	+	0	NA	Intergenic	Intergenic	-2914	NM_146410	258405	Mm.358933	NM_146410	ENSMUSG00000060878	Olfr1420	MOR266-4	olfactory receptor 1420	protein-coding	5.407	2.273	0.863	9.406	3.704	2.324	5.078	5.985	nan	5.985	2.745	2.347	3.797	6.456	7.240	nan	4.784	7.405	1.362	1.267	1.159	3.389	1.842	2.424	11.033
2372	chr11	69474885	69477330	+	0	NA	intron (NM_001081330, intron 35 of 85)	B2_Mm2|SINE|B2	-62432	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	8.478	15.141	7.001	8.149	6.581	6.145	6.998	8.278	5.339	6.153	5.810	3.080	6.701	7.711	8.285	9.736	6.347	6.691	5.306	3.536	4.991	6.803	nan	6.365	8.687
4630	chr14	46582300	46584213	+	0	NA	Intergenic	MIRc|SINE|MIR	-7405	NR_046459	100873094	Mm.318596	NR_046459		Rubie	-	RNA upstream of Bmp4 expressed in inner ear	ncRNA	0.838	0.369	0.506	1.158	0.527	0.714	0.901	0.530	1.211	1.684	1.221	0.406	2.555	3.991	0.764	1.235	0.721	0.690	0.576	0.649	0.448	0.606	0.644	0.556	1.232
9992	chr4	40745640	40751398	+	0	NA	intron (NM_021535, intron 6 of 11)	intron (NM_021535, intron 6 of 11)	9366	NM_021535	74255	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	2.040	1.054	0.360	1.416	1.345	0.502	1.367	2.129	2.578	1.913	7.810	2.763	1.478	2.170	2.124	nan	1.137	2.682	1.005	0.487	0.427	0.759	0.403	0.480	2.888
2945	chr11	109510395	109514570	+	0	NA	intron (NM_028710, intron 4 of 13)	ID4_|SINE|ID	-31229	NM_001166177	74008	Mm.482224	NM_028710	ENSMUSG00000020604	Arsg	6330406P08Rik|AI846872	arylsulfatase G	protein-coding	8.061	9.095	3.585	7.985	5.994	3.675	6.777	6.610	4.791	9.781	5.369	3.418	4.761	7.278	6.658	7.745	6.374	7.023	6.437	4.992	3.632	nan	5.037	4.219	8.795
11125	chr5	32177033	32180434	+	0	NA	Intergenic	RLTR10|LTR|ERVK	42261	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	2.307	1.538	1.041	2.070	2.060	0.863	1.451	1.598	2.028	2.936	3.708	2.917	1.389	1.880	1.890	2.095	1.555	1.766	2.059	2.260	1.339	3.696	1.080	1.046	1.649
8799	chr2	151355069	151357997	+	0	NA	Intergenic	L1Md_F2|LINE|L1	54494	NR_040747	74660	Mm.170672	NR_040747	ENSMUSG00000087609	4930442J19Rik	1700029E19Rik|Gm14152|OTTMUSG00000015807	RIKEN cDNA 4930442J19 gene	ncRNA	4.799	1.106	0.542	3.044	2.718	2.246	7.654	5.665	3.947	4.431	1.434	1.798	7.653	6.145	7.374	9.262	5.068	6.125	nan	0.834	0.795	0.931	0.792	0.716	8.543
4673	chr14	55031863	55034648	+	0	NA	Intergenic	Intergenic	-5207	NR_073535	100151693	Mm.378403	NR_073535	ENSMUSG00000072492	Gm10364	EG545052|ENSMUSG00000072492	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	6.344	8.989	4.299	4.564	3.546	1.975	5.182	6.317	3.897	5.428	3.701	2.232	6.525	7.546	4.887	6.720	3.754	5.904	1.341	2.273	1.601	2.654	1.296	0.605	8.178
6533	chr17	31849641	31852428	+	0	NA	exon (NM_010831, exon 6 of 14)	exon (NM_010831, exon 6 of 14)	4758	NM_010831	17691	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Msk|Sik|Snf1lk	salt inducible kinase 1	protein-coding	4.240	1.128	0.907	3.392	4.519	2.992	6.063	2.567	3.468	6.537	0.766	0.976	5.149	8.380	3.187	5.676	4.704	2.949	0.587	1.300	0.769	0.481	1.086	0.638	5.958
577	chr1	129998808	130001172	+	0	NA	intron (NM_172485, intron 15 of 27)	intron (NM_172485, intron 15 of 27)	423053	NM_007827	13137	Mm.436759	NM_007827	ENSMUSG00000026401	Cd55b	AI323748|Daf|Daf-TM|Daf2|TM-DAF	CD55 molecule, decay accelerating factor for complement B	protein-coding	9.030	10.949	4.124	7.063	4.367	2.483	6.058	6.010	4.601	6.999	4.061	2.896	6.940	7.041	9.039	12.148	7.227	6.769	nan	2.388	2.922	5.417	3.443	3.540	10.820
3511	chr12	81209869	81220350	+	0	NA	intron (NM_001167920, intron 2 of 6)	intron (NM_001167920, intron 2 of 6)	48958	NR_037227	100526532		NR_037227	ENSMUSG00000092673	Mir3067	mir-3067|mmu-mir-3067	microRNA 3067	ncRNA	14.267	16.240	6.633	10.795	6.057	3.723	11.708	8.878	7.242	10.691	8.549	4.865	11.279	13.833	10.663	12.159	10.870	10.723	3.474	2.587	2.395	3.553	2.199	1.997	19.353
7684	chr19	29311359	29317745	+	0	NA	Intergenic	Intergenic	10766	NM_013754	27356	Mm.306511	NM_013754	ENSMUSG00000050957	Insl6	RIF1	insulin-like 6	protein-coding	4.660	3.262	1.996	nan	2.181	1.149	4.959	5.540	3.427	3.297	nan	2.251	4.837	7.280	2.800	3.847	4.862	5.752	nan	0.993	0.410	0.650	nan	0.483	4.518
8265	chr2	59432090	59434581	+	0	NA	Intergenic	L1_Mus2|LINE|L1	-46653	NR_040510	76676	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	3.520	0.474	0.419	1.557	1.944	1.365	1.370	1.926	1.495	2.453	0.492	0.743	2.997	4.062	1.374	1.854	3.493	1.908	1.106	1.499	1.240	1.744	1.335	0.901	1.739
14433	chr8	89268312	89272941	+	0	NA	Intergenic	Intergenic	-226464	NM_021390	58198	Mm.214361	NM_021390	ENSMUSG00000031665	Sall1	Msal-3	sal-like 1 (Drosophila)	protein-coding	6.006	5.684	1.861	8.003	5.159	3.986	4.085	5.965	nan	9.679	3.826	1.595	6.617	7.886	8.205	9.553	6.022	8.334	nan	1.879	2.560	6.160	2.399	2.934	10.396
7305	chr18	61925120	61928780	+	0	NA	Intergenic	Intergenic	-15098	NM_001164491	319713	Mm.329478	NM_198649	ENSMUSG00000032735	Ablim3	AW990719|D930036B08Rik	actin binding LIM protein family, member 3	protein-coding	7.001	nan	0.703	nan	4.265	2.069	3.107	nan	2.853	3.879	1.443	1.759	nan	4.153	3.205	3.857	2.760	5.869	nan	1.612	1.066	nan	0.745	0.719	nan
11746	chr5	128555577	128558431	+	0	NA	Intergenic	Lx3_Mus|LINE|L1	43683	NR_015517	319616	Mm.387738	NR_015517	ENSMUSG00000072591	5930412G12Rik	-	RIKEN cDNA 5930412G12 gene	ncRNA	0.263	0.207	0.171	0.247	0.055	0.042	0.253	0.180	0.261	nan	0.225	0.279	0.078	0.183	nan	0.362	nan	nan	4.346	3.015	1.934	4.780	5.816	3.934	nan
9791	chr3	126360631	126368161	+	0	NA	5' UTR (NM_173451, exon 1 of 2)	5' UTR (NM_173451, exon 1 of 2)	544	NM_173451	271970	Mm.317021	NM_173451	ENSMUSG00000046561	Arsj	9330196J05Rik|D830047F08	arylsulfatase J	protein-coding	6.083	8.178	4.303	4.135	4.904	2.746	8.134	6.221	4.881	4.367	4.831	3.351	7.969	8.899	6.080	5.269	4.747	7.257	2.166	1.655	0.787	1.119	2.234	1.439	5.104
4843	chr14	75265140	75268862	+	0	NA	intron (NM_019775, intron 5 of 10)	intron (NM_019775, intron 5 of 10)	-17372	NM_026083	67302	Mm.74704	NM_026083	ENSMUSG00000022000	Zc3h13	2600010B19Rik|3110050K21Rik|4930570G11Rik|C87618	zinc finger CCCH type containing 13	protein-coding	6.307	2.105	1.327	3.733	3.338	0.972	4.791	4.164	3.388	4.307	2.287	1.743	5.314	5.543	5.376	7.058	4.158	4.307	1.448	2.307	0.750	2.013	1.677	0.854	9.155
13402	chr7	91026049	91029483	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	-63020	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	2.796	8.005	5.632	3.496	1.913	1.038	1.983	3.660	nan	2.651	0.755	1.831	2.427	2.825	2.461	nan	nan	nan	1.050	1.066	0.626	nan	0.691	0.473	1.718
8609	chr2	122055617	122061313	+	0	NA	intron (NM_145531, intron 34 of 39)	intron (NM_145531, intron 34 of 39)	29882	NM_001256055	100042807	Mm.329403	NM_001256055	ENSMUSG00000043424	Eif3j2	ENSMUSG00000043424|Eif3j-2|Gm9781|eIF3 p35|eIF3j-B	eukaryotic translation initiation factor 3, subunit J2	protein-coding	1.784	1.964	1.116	1.453	0.641	0.557	0.812	1.974	1.331	1.233	8.749	2.122	nan	1.140	1.341	nan	2.091	1.527	1.537	1.355	1.105	2.284	0.896	0.999	nan
643	chr1	135307931	135316447	+	0	NA	intron (NM_011590, intron 1 of 5)	MIR|SINE|MIR	1548	NM_011590	21854	Mm.2368	NM_011590	ENSMUSG00000062580	Timm17a	17kDa|mTim17a	translocase of inner mitochondrial membrane 17a	protein-coding	8.131	1.529	0.458	7.537	3.219	1.676	3.065	4.781	4.626	5.691	5.553	3.968	4.169	6.665	4.472	6.776	5.536	6.534	4.059	1.939	1.624	3.214	4.012	3.307	10.816
12945	chr7	17364803	17371246	+	0	NA	Intergenic	Intergenic	164547	NM_054064	114872	Mm.322280	NM_054064	ENSMUSG00000023159	Psg29	AA102956|AA409969|cea17	pregnancy-specific glycoprotein 29	protein-coding	6.466	9.466	3.352	6.176	3.826	2.215	6.717	10.169	3.363	5.249	3.231	1.909	7.437	8.744	7.025	8.143	7.591	6.176	3.756	2.060	2.354	4.301	3.390	3.210	10.843
13149	chr7	50967255	50971271	+	0	NA	Intergenic	Intergenic	370073	NM_172901	243996	Mm.443270	NM_172901	ENSMUSG00000084234	4933405O20Rik	-	RIKEN cDNA 4933405O20 gene	protein-coding	6.417	0.580	0.483	2.810	2.743	1.350	10.634	9.004	3.450	4.078	2.719	0.975	6.641	5.566	8.324	8.860	11.570	5.556	0.401	0.851	0.414	0.247	0.901	0.443	10.072
6528	chr17	31451994	31464175	+	0	NA	intron (NM_008804, intron 9 of 18)	MLT1B|LTR|ERVL-MaLR	54403	NM_021322	57773	Mm.143771	NM_021322	ENSMUSG00000024037	Wdr4	AI415180|AI448349|D530049K22Rik	WD repeat domain 4	protein-coding	4.330	2.060	0.802	4.035	3.499	2.048	7.880	8.021	4.882	5.779	4.820	4.774	5.793	8.312	8.047	10.297	4.810	6.736	5.633	2.954	2.316	5.739	4.746	4.258	8.459
8055	chr2	27558374	27561128	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	44604	NM_080848	140858	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	5.104	1.121	0.564	2.181	1.971	1.049	10.382	12.027	nan	1.848	7.627	2.993	4.293	4.259	4.736	8.537	7.694	2.266	0.919	1.419	1.037	1.528	1.028	0.905	8.212
13182	chr7	52720553	52723596	+	0	NA	Intergenic	Lx6|LINE|L1	-706358	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	6.344	7.227	2.523	4.969	3.394	2.604	4.630	6.612	3.089	5.603	2.338	2.409	3.662	5.798	5.337	6.496	4.140	5.515	3.708	2.364	1.984	3.315	3.527	3.583	9.947
6193	chr16	90864330	90866156	+	0	NA	intron (NM_001316760, intron 3 of 9)	MLT1C|LTR|ERVL-MaLR	34384	NM_001316761	70967	Mm.253077	NM_027627	ENSMUSG00000039903	Eva1c	1700092M14Rik|4931408A02Rik|Fam176c	eva-1 homolog C (C. elegans)	protein-coding	2.486	nan	0.493	2.501	2.593	2.010	1.042	1.087	1.481	1.741	7.053	2.873	0.596	1.719	1.414	2.535	1.006	nan	0.683	0.388	0.766	nan	0.618	0.315	4.420
1120	chr10	18447989	18449375	+	0	NA	intron (NM_173390, intron 1 of 6)	intron (NM_173390, intron 1 of 6)	-21299	NM_001163592	215819	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	2.131	0.391	0.283	1.369	1.344	1.217	1.437	1.086	2.674	2.330	0.363	0.142	2.285	3.088	2.761	3.849	2.141	3.479	0.742	0.249	0.480	0.594	0.457	0.342	2.313
13021	chr7	26195733	26198399	+	0	NA	intron (NM_010000, intron 4 of 8)	intron (NM_010000, intron 4 of 8)	23657	NM_010000	13094	Mm.14413	NM_010000	ENSMUSG00000040660	Cyp2b9	Cyp2b	cytochrome P450, family 2, subfamily b, polypeptide 9	protein-coding	7.468	0.982	0.607	6.232	7.403	4.903	7.688	7.805	5.867	5.999	5.855	5.448	10.381	8.818	5.880	8.700	6.721	7.311	3.263	3.532	2.274	4.271	4.668	4.254	4.516
12284	chr6	66858416	66862378	+	0	NA	Intergenic	Intergenic	-36000	NM_001177557	14701	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	6.596	2.480	1.088	4.349	4.852	2.903	7.570	10.409	3.788	4.382	3.166	2.223	6.701	9.501	7.392	8.225	5.788	6.178	0.896	0.680	0.490	0.950	1.029	0.573	5.405
5402	chr15	78376325	78379838	+	0	NA	TTS (NM_028522)	TTS (NM_028522)	10688	NM_001163613	73376	Mm.73222	NM_028522	ENSMUSG00000062154	Tex33	1700061J05Rik|Ean57	testis expressed 33	protein-coding	7.877	nan	0.592	nan	2.707	1.799	nan	13.254	3.451	5.484	nan	0.855	5.307	8.975	5.534	5.807	5.119	4.921	1.595	1.054	1.050	nan	1.815	1.062	7.916
1187	chr10	24645058	24647062	+	0	NA	intron (NM_001308327, intron 23 of 24)	intron (NM_001308327, intron 23 of 24)	50618	NM_010217	14219	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	2.127	0.636	0.535	0.817	1.163	0.492	2.153	1.885	1.193	1.602	6.051	1.105	1.574	1.739	1.680	1.999	2.895	0.972	1.799	1.062	0.739	1.064	1.136	1.133	1.748
7474	chr19	4146562	4150132	+	0	NA	promoter-TSS (NM_011778)	promoter-TSS (NM_011778)	-316	NM_011778	23789	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	6.748	11.981	3.837	7.043	3.478	2.341	4.229	7.880	3.691	5.492	3.144	1.930	2.956	6.641	5.336	6.302	4.832	5.817	1.753	1.927	1.836	3.166	1.691	1.548	9.315
13158	chr7	51915414	51927352	+	0	NA	intron (NM_008087, intron 3 of 7)	intron (NM_008087, intron 3 of 7)	42416	NM_001330607	14453	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	6.217	0.624	0.306	5.954	3.485	2.114	6.975	9.665	5.265	7.248	3.096	1.417	9.363	10.539	8.518	9.666	6.620	8.294	2.897	1.935	1.529	3.349	2.211	1.711	10.262
2092	chr11	40504705	40508618	+	0	NA	Intergenic	RMER1B|Other|Other	186021	NM_134017	108645	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	8.806	10.710	4.383	8.209	4.127	2.133	6.341	7.418	5.858	7.417	5.023	4.094	7.572	9.296	8.483	9.011	7.088	9.457	3.708	2.717	1.634	4.031	3.094	2.147	8.750
8620	chr2	124681309	124682802	+	0	NA	Intergenic	Intergenic	28474	NM_199239	214968	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	3.354	0.854	0.497	1.867	1.817	0.864	2.565	4.503	2.304	1.360	1.977	1.772	2.708	3.509	2.051	2.165	1.202	1.870	nan	0.509	0.123	0.856	0.636	0.356	1.251
1251	chr10	41987977	41991569	+	0	NA	intron (NM_001034858, intron 5 of 17)	intron (NM_001034858, intron 5 of 17)	28609	NM_001034858	213402	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	6.035	6.715	2.399	5.840	4.050	2.126	3.056	5.260	3.247	3.473	2.785	1.195	3.072	5.180	4.721	4.726	4.305	5.462	1.916	1.630	0.897	1.460	0.773	0.656	5.444
3904	chr13	25401018	25405181	+	0	NA	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-133103	NM_009513	22360	Mm.4766	NM_009513	ENSMUSG00000048978	Nrsn1	Neurensin-1|Neuro-p24|Vmp	neurensin 1	protein-coding	4.529	0.362	0.470	1.095	4.489	2.298	5.459	5.466	3.135	5.720	2.910	0.481	4.547	7.039	3.260	1.169	3.215	3.045	0.543	0.593	0.343	0.413	0.386	0.342	1.171
8693	chr2	132468119	132469929	+	0	NA	Intergenic	Intergenic	-21704	NR_028286	70371	Mm.394667	NR_028286	ENSMUSG00000086379	1700026D11Rik	-	RIKEN cDNA 1700026D11 gene	ncRNA	3.233	5.807	3.248	1.632	1.510	1.186	2.063	4.810	1.580	1.686	2.140	2.904	1.465	1.308	1.526	2.022	1.827	1.714	4.140	4.129	4.272	3.386	9.021	8.116	1.815
8769	chr2	147662834	147665685	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-46434	NR_046014	381384	Mm.259809	NR_046014	ENSMUSG00000051986	A530006G24Rik	Gm1003	RIKEN cDNA A530006G24 gene	ncRNA	1.146	0.533	0.272	0.363	0.440	0.167	0.937	1.544	0.928	0.819	0.467	0.405	0.979	0.681	1.204	1.559	0.873	1.320	6.701	3.676	2.128	6.559	4.411	2.981	1.145
879	chr1	173257396	173261677	+	0	NA	Intergenic	L1Md_A|LINE|L1	-10611	NM_146651	258645	Mm.377611	NM_146651	ENSMUSG00000049605	Olfr418	MOR267-12P|MOR267-8|Olfr1403|Olfr418-ps1	olfactory receptor 418	protein-coding	13.747	7.806	4.270	7.149	8.657	5.202	11.390	8.374	5.278	9.814	6.365	5.403	7.789	11.535	7.330	11.313	10.769	7.307	4.320	5.101	3.382	3.612	6.160	5.211	10.672
5452	chr15	80798488	80824630	+	0	NA	intron (NM_177124, intron 1 of 21)	B1_Mus1|SINE|Alu	12949	NM_177124	213988	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	nan	nan	0.642	nan	3.930	3.056	nan	13.350	5.962	nan	nan	4.241	10.116	nan	5.451	5.716	nan	6.540	2.153	1.543	1.675	nan	3.577	3.357	4.360
3899	chr13	24696273	24697257	+	0	NA	intron (NM_001286100, intron 13 of 22)	intron (NM_001286100, intron 13 of 22)	58117	NM_029679	193385	Mm.217319	NM_029679	ENSMUSG00000036006	Fam65b	-	family with sequence similarity 65, member B	protein-coding	1.873	3.482	2.838	1.586	1.755	0.579	0.702	0.826	1.253	1.095	1.460	0.629	0.327	0.854	0.757	0.971	0.984	1.343	4.521	4.785	5.845	7.153	3.057	4.702	1.493
15587	chr9	119478891	119488465	+	0	NA	3' UTR (NM_001253860, exon 27 of 27)	3' UTR (NM_001253860, exon 27 of 27)	38755	NM_172456	208194	Mm.101578	NM_172456	ENSMUSG00000042787	Exog	AW557704|ENGL-B|ENGL-a|Endogl1|Endogl2|Engl|Engla|Englb	endo/exonuclease (5'-3'), endonuclease G-like	protein-coding	0.182	0.855	0.322	0.304	0.109	0.102	0.189	0.250	0.264	0.329	0.105	0.106	0.150	0.312	0.251	0.490	0.185	0.320	3.029	2.021	1.620	6.239	nan	1.786	0.686
13759	chr7	134092517	134096048	+	0	NA	intron (NM_007400, intron 3 of 22)	intron (NM_007400, intron 3 of 22)	130815	NM_007400	11489	Mm.439714	NM_007400	ENSMUSG00000054555	Adam12	Mltna	a disintegrin and metallopeptidase domain 12 (meltrin alpha)	protein-coding	0.692	nan	0.475	0.539	0.368	0.140	0.920	0.813	nan	0.555	0.424	0.157	0.376	0.780	0.571	0.832	0.522	0.576	7.064	6.674	4.220	7.519	7.751	5.663	0.958
3104	chr11	120108952	120118909	+	0	NA	intron (NM_024249, intron 11 of 16)	intron (NM_024249, intron 11 of 16)	14996	NM_001110242	208501	Mm.46699	NM_001110242	ENSMUSG00000078572	Ndufaf8	1810043H04Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 8	protein-coding	4.537	nan	0.290	6.605	3.759	2.491	nan	7.187	5.127	7.061	2.731	1.110	6.579	9.849	5.623	7.469	3.896	7.011	1.197	nan	0.972	2.014	0.695	0.642	8.041
3961	chr13	34799965	34803148	+	0	NA	Intergenic	Intergenic	61914	NM_138746	108161	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	5.817	nan	0.223	6.656	4.159	2.114	nan	nan	5.876	5.372	5.355	3.340	6.341	6.243	4.205	4.089	2.292	8.175	0.868	0.640	0.462	0.920	0.603	0.332	nan
1444	chr10	75719762	75721718	+	0	NA	intron (NM_172549, intron 23 of 36)	intron (NM_172549, intron 23 of 36)	43617	NM_172549	104248	Mm.257404	NM_172549	ENSMUSG00000020196	Cabin1	A330070M20Rik|Cain|Ppp3in	calcineurin binding protein 1	protein-coding	6.505	0.925	0.302	6.414	3.722	3.705	3.473	6.129	5.936	5.820	2.003	2.747	5.584	7.583	6.376	7.719	3.932	7.684	3.327	0.530	0.946	2.607	1.176	0.993	7.501
8705	chr2	136442137	136447529	+	0	NA	Intergenic	Intergenic	-56866	NM_172858	241656	Mm.131572	NM_172858	ENSMUSG00000039913	Pak7	2900083L08Rik|6430627N20|Pak5	p21 protein (Cdc42/Rac)-activated kinase 7	protein-coding	2.908	0.312	0.349	1.275	1.669	0.770	4.942	6.926	3.962	3.557	4.378	6.088	4.384	2.760	3.582	3.135	2.241	3.398	3.078	2.084	1.030	1.792	3.588	2.052	0.819
12261	chr6	55290755	55295406	+	0	NA	intron (NM_001142781, intron 13 of 17)	intron (NM_001142781, intron 13 of 17)	-43219	NM_007472	11826	Mm.18625	NM_007472	ENSMUSG00000004655	Aqp1	CHIP28	aquaporin 1	protein-coding	3.417	0.965	0.174	4.337	1.550	0.591	4.346	5.244	3.879	5.115	0.859	0.604	4.394	6.682	5.228	6.073	4.322	5.672	nan	0.500	0.264	0.915	0.355	0.251	5.955
9907	chr4	6909905	6919245	+	0	NA	intron (NM_145711, intron 1 of 8)	intron (NM_145711, intron 1 of 8)	76148	NM_145711	252838	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	1.997	8.373	3.120	2.423	1.088	0.604	1.499	nan	2.050	2.402	0.297	1.085	1.265	1.171	1.589	1.790	1.622	2.396	7.004	nan	2.838	7.581	4.715	3.904	2.572
2600	chr11	87475489	87480827	+	0	NA	intron (NM_001199293, intron 3 of 30)	RLTRETN_Mm|LTR|ERVK	50567	NM_001199293	83560	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	5.754	2.995	1.254	nan	3.098	1.445	5.026	5.935	5.914	5.390	4.850	3.532	6.260	7.158	7.226	7.831	6.225	7.977	0.655	0.945	0.565	nan	0.425	0.349	nan
5749	chr16	4592083	4597329	+	0	NA	promoter-TSS (NM_031184)	promoter-TSS (NM_031184)	-7	NM_031184	83396	Mm.134072	NM_031184	ENSMUSG00000014303	Glis2	Gli5|Klf16|Nkl	GLIS family zinc finger 2	protein-coding	3.991	2.546	0.742	5.750	1.828	1.206	5.252	6.686	2.053	4.227	2.186	1.898	4.790	5.077	5.085	7.542	4.177	5.717	3.143	1.248	1.356	3.181	1.974	2.549	8.383
4616	chr14	41956214	41964654	+	0	NA	Intergenic	Intergenic	134843	NR_073362	73553	Mm.243777	NM_028570	ENSMUSG00000090462	1700091H14Rik	100041930|Gm3578	RIKEN cDNA 1700091H14 gene	ncRNA	4.052	0.411	0.594	3.485	3.734	2.202	5.807	4.387	4.759	5.913	0.510	0.647	6.553	7.382	6.172	6.378	4.172	6.090	0.673	0.775	0.570	0.617	0.799	0.707	4.914
11905	chr5	141302826	141306356	+	0	NA	intron (NM_177879, intron 1 of 44)	intron (NM_177879, intron 1 of 44)	63057	NM_177879	330222	Mm.151931	NM_177879	ENSMUSG00000039683	Sdk1	5330440E10|6720466O15Rik	sidekick cell adhesion molecule 1	protein-coding	5.983	4.345	1.342	5.669	3.083	1.280	2.498	2.664	3.659	7.392	2.451	1.354	2.405	3.544	3.886	4.953	2.637	4.555	3.052	1.757	1.436	3.262	nan	2.830	5.402
15847	chrX	151627349	151629375	+	0	NA	intron (NM_001113354, intron 20 of 21)	B1_Mus1|SINE|Alu	107690	NM_001113354	320595	Mm.17156	NM_177201	ENSMUSG00000041229	Phf8	9830141C09Rik|mKIAA1111	PHD finger protein 8	protein-coding	7.092	0.551	0.432	2.842	5.486	2.635	5.951	6.208	4.766	5.266	4.756	4.055	5.450	6.495	4.490	5.038	4.410	4.802	0.919	1.025	0.814	0.649	0.758	0.513	4.640
13523	chr7	108529896	108534356	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-8178	NM_146739	258734	Mm.377664	NM_146739	ENSMUSG00000058014	Olfr502	MOR204-8	olfactory receptor 502	protein-coding	4.569	3.155	1.066	4.221	2.354	0.903	2.833	6.836	2.685	2.868	1.462	1.918	2.248	3.830	3.606	4.023	1.455	4.658	nan	1.005	0.950	1.285	1.559	1.494	4.794
1828	chr10	124824889	124828300	+	0	NA	Intergenic	Intergenic	357520	NR_028310	75030	Mm.159403	NR_028310		4930503E24Rik	-	eukaryotic translation initiation factor 3, subunit I pseudogene	pseudo	5.034	nan	0.497	4.800	1.950	1.667	2.411	3.759	2.221	4.339	0.858	1.085	2.632	3.559	4.567	4.322	4.823	3.524	7.034	4.811	5.216	7.712	5.326	5.350	7.230
13188	chr7	52882423	52884597	+	0	NA	Intergenic	Intergenic	-867794	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	6.431	4.015	1.222	8.932	4.305	3.031	3.192	4.688	3.812	9.968	4.039	2.767	3.618	6.531	4.879	6.362	3.928	7.539	3.106	3.275	3.219	3.730	3.013	3.924	8.162
15499	chr9	108203380	108212126	+	0	NA	exon (NM_001276486, exon 4 of 4)	exon (NM_001276486, exon 4 of 4)	-17370	NM_007567	12217	Mm.20425	NM_007567	ENSMUSG00000032589	Bsn	-	bassoon	protein-coding	7.696	5.008	2.186	7.604	5.994	4.450	5.986	6.709	6.018	8.006	5.748	4.125	7.019	9.121	6.644	8.044	5.346	8.335	3.974	2.404	2.887	3.744	3.657	4.004	9.690
13987	chr8	10973804	10975506	+	0	NA	Intergenic	Intergenic	-33195	NR_046017	619321	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	2.050	0.636	0.461	1.406	1.806	1.638	2.026	3.027	2.923	2.347	0.741	1.579	3.473	4.544	2.865	3.048	2.617	2.324	0.921	1.180	0.461	1.586	1.341	0.793	1.695
3006	chr11	116436565	116438276	+	0	NA	intron (NM_176902, intron 2 of 2)	intron (NM_176902, intron 2 of 2)	3207	NR_003376	664849	Mm.258466	NR_003376		Gm7367	EG664849	1110014K08Rik pseudogene	pseudo	1.651	nan	0.382	2.832	2.587	1.840	2.490	2.707	2.267	3.432	0.718	0.581	2.202	4.937	2.114	3.421	1.823	2.468	0.845	nan	0.732	1.125	0.513	0.251	2.501
306	chr1	74362488	74369546	+	0	NA	intron (NM_001033345, intron 6 of 9)	B1_Mur4|SINE|Alu	3909	NM_001033345	241112	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	2.338	1.344	1.090	1.383	1.343	1.115	4.253	2.037	2.267	1.927	0.757	0.788	2.936	2.587	2.523	nan	2.667	nan	nan	nan	0.937	0.610	nan	0.990	nan
13556	chr7	116702711	116708291	+	0	NA	Intergenic	RMER1B|Other|Other	201132	NM_001130479	53322	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	6.150	2.846	1.772	4.961	2.964	1.559	4.609	5.593	3.215	3.517	5.475	3.140	6.185	5.571	3.954	4.284	4.284	5.763	4.827	3.250	1.207	5.118	4.270	2.651	5.438
10045	chr4	45977146	45980727	+	0	NA	intron (NM_146142, intron 1 of 16)	intron (NM_146142, intron 1 of 16)	6639	NM_146142	100121	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	6.508	nan	0.504	3.476	1.856	0.726	5.811	6.471	4.133	3.829	2.971	3.471	6.070	6.022	5.211	7.641	3.592	6.391	1.582	0.922	0.581	nan	0.943	0.493	6.673
70	chr1	33440364	33442302	+	0	NA	Intergenic	L1Md_F2|LINE|L1	228461	NM_008922	19076	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding	0.771	0.280	0.389	2.433	2.753	2.165	1.013	0.307	1.012	0.847	0.444	0.417	2.005	3.934	2.225	nan	0.637	2.120	0.321	0.491	0.579	0.273	0.821	0.590	1.224
15461	chr9	106171685	106173553	+	0	NA	intron (NM_029896, intron 1 of 8)	intron (NM_029896, intron 1 of 8)	1690	NM_029896	77305	Mm.265125	NM_029896	ENSMUSG00000020257	Wdr82	9430077D24Rik|CDW5/WDR82	WD repeat domain containing 82	protein-coding	2.663	0.945	1.463	3.276	2.102	1.299	1.267	2.896	nan	nan	1.852	1.323	1.534	1.886	2.123	nan	1.681	3.572	2.189	1.500	1.183	2.458	2.786	2.277	2.451
7095	chr18	31963226	31965961	+	0	NA	intron (NM_032394, intron 38 of 46)	intron (NM_032394, intron 38 of 46)	-14957	NM_001025381	574402	Mm.391108	NM_001025381	ENSMUSG00000052229	Gpr17	AI853548	G protein-coupled receptor 17	protein-coding	9.636	7.588	3.290	6.957	6.428	4.935	8.504	9.897	5.378	8.021	4.084	3.166	7.581	8.086	7.208	8.588	6.799	7.591	3.855	2.638	3.853	3.815	4.203	3.395	11.890
11840	chr5	137578152	137579636	+	0	NA	exon (NM_001289507, exon 9 of 18)	exon (NM_001289507, exon 9 of 18)	8089	NM_001289507	50765	Mm.21757	NM_015799	ENSMUSG00000029716	Tfr2	Trfr2	transferrin receptor 2	protein-coding	2.089	2.699	0.362	3.097	1.332	0.740	3.592	5.215	1.796	2.965	3.191	2.334	2.181	5.241	2.772	2.452	1.872	2.994	0.967	0.431	0.418	0.628	nan	1.088	3.302
166	chr1	51987283	51990344	+	0	NA	intron (NM_001308266, intron 1 of 24)	MERVL-int|LTR|ERVL	1665	NM_001308266	20849	Mm.1550	NM_011487	ENSMUSG00000062939	Stat4	-	signal transducer and activator of transcription 4	protein-coding	4.426	1.549	0.783	1.390	0.764	0.121	3.946	3.101	2.282	2.007	2.614	1.775	3.699	2.626	3.870	5.686	5.280	3.575	nan	0.975	0.561	0.791	1.050	0.296	3.121
1578	chr10	87881120	87885242	+	0	NA	intron (NM_001314010, intron 3 of 4)	intron (NM_001314010, intron 3 of 4)	22070	NM_001111276	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	2.722	15.051	8.390	1.567	1.020	0.813	0.920	1.324	1.245	1.330	0.822	0.490	0.770	nan	1.202	1.465	1.434	1.559	0.819	1.237	0.710	nan	nan	0.303	1.699
15193	chr9	64581692	64585836	+	0	NA	intron (NM_001134399, intron 5 of 24)	URR1A|DNA|hAT-Charlie	153992	NM_017382	53869	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	8.839	6.941	2.523	8.372	6.587	4.792	7.958	8.796	5.850	9.106	6.717	4.506	7.880	10.406	7.716	7.814	6.757	7.915	4.776	3.465	3.557	5.111	4.383	4.213	11.373
4352	chr13	102684989	102690035	+	0	NA	Intergenic	L1Md_F3|LINE|L1	-6046	NM_008533	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly78|RP105	CD180 antigen	protein-coding	4.298	1.174	0.595	2.001	1.334	0.722	4.370	5.905	3.572	3.178	3.048	2.148	5.789	5.131	5.500	5.623	3.691	nan	1.170	1.181	0.878	1.292	1.081	1.010	4.581
11268	chr5	65016750	65018263	+	0	NA	intron (NM_026667, intron 7 of 13)	ORR1F|LTR|ERVL-MaLR	47188	NR_030577	100124451		NR_030577	ENSMUSG00000077042	Mir574	Mirn574|mir-574|mmu-mir-574	microRNA 574	ncRNA	2.942	2.314	1.119	1.523	1.460	0.543	5.624	4.905	2.563	2.692	4.309	2.415	3.192	4.159	5.088	5.011	2.707	2.573	4.872	2.328	1.106	5.254	3.517	2.459	4.974
6728	chr17	50319552	50326906	+	0	NA	Intergenic	Lx6|LINE|L1	-29609	NM_001277863	13164	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	1.659	9.720	4.013	1.550	0.809	0.503	0.346	0.464	0.951	0.834	0.363	0.394	0.284	nan	0.736	1.253	nan	1.552	0.663	0.679	0.633	0.590	0.355	0.247	1.038
466	chr1	94869008	94874178	+	0	NA	Intergenic	Intergenic	74151	NR_040473	74689	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	4.311	2.796	1.285	2.222	1.595	1.213	1.481	2.703	2.685	3.380	2.008	1.076	2.708	4.332	2.061	nan	1.839	nan	nan	1.026	1.031	nan	0.735	0.747	4.900
134	chr1	39995587	40000081	+	0	NA	intron (NM_001252200, intron 13 of 31)	intron (NM_001252200, intron 13 of 31)	-86934	NM_010555	16178	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	4.629	1.788	0.870	2.580	3.065	1.695	2.930	3.151	2.321	2.914	2.306	1.633	3.072	4.008	2.905	nan	2.880	4.777	1.891	1.628	0.811	2.163	1.506	0.745	2.972
3290	chr12	36607303	36608950	+	0	NA	intron (NM_178629, intron 9 of 9)	MTA_Mm|LTR|ERVL-MaLR	192510	NR_037309	100499526		NR_037309	ENSMUSG00000092917	Mir3472	mmu-mir-3472	microRNA 3472	ncRNA	5.275	nan	0.330	1.776	2.007	0.705	4.468	2.210	nan	3.340	1.509	0.787	5.295	4.326	3.668	4.484	4.644	3.967	nan	0.285	0.385	0.156	0.316	0.057	4.761
4732	chr14	61142887	61144720	+	0	NA	intron (NM_172809, intron 1 of 9)	intron (NM_172809, intron 1 of 9)	5346	NM_172809	50720	Mm.440703	NM_015788	ENSMUSG00000048279	Sacs	A230052M14|DNAJC29|E130115J16Rik|mKIAA0730	sacsin	protein-coding	0.788	6.661	5.341	1.238	0.748	0.154	0.829	nan	0.817	0.723	0.705	0.551	0.206	0.442	0.682	0.909	0.447	0.934	0.767	0.951	0.879	0.856	0.568	0.551	0.882
7183	chr18	38508531	38510318	+	0	NA	Intergenic	L1MC4|LINE|L1	90449	NM_022996	65113	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	8.572	4.760	4.579	4.498	4.944	2.697	6.072	5.627	5.821	5.876	4.869	3.423	5.678	7.092	5.492	6.733	6.417	6.184	1.948	2.699	1.238	2.027	1.991	1.298	4.609
13019	chr7	26170121	26176156	+	0	NA	promoter-TSS (NM_010000)	promoter-TSS (NM_010000)	-271	NM_010000	13094	Mm.14413	NM_010000	ENSMUSG00000040660	Cyp2b9	Cyp2b	cytochrome P450, family 2, subfamily b, polypeptide 9	protein-coding	8.838	4.872	2.172	10.228	7.276	4.033	6.518	11.691	5.585	7.188	3.501	2.196	7.118	8.306	7.917	6.239	5.428	7.986	1.540	2.694	1.867	5.541	1.414	1.091	8.373
3717	chr12	110099834	110106789	+	0	NA	Intergenic	Intergenic	54762	NR_045466	67280	Mm.390495	NR_045466		3110009F21Rik	-	RIKEN cDNA 3110009F21 gene	ncRNA	6.614	1.963	0.516	4.835	1.939	1.182	6.866	4.608	nan	nan	0.970	0.599	5.373	8.019	5.869	6.803	5.537	7.640	1.775	1.104	1.222	2.595	3.052	2.024	8.629
6782	chr17	65025502	65028072	+	0	NA	Intergenic	Intergenic	-190716	NM_030031	78057	Mm.109380	NM_030031	ENSMUSG00000024088	4930583I09Rik	-	RIKEN cDNA 4930583I09 gene	protein-coding	1.236	1.037	0.278	0.804	0.851	0.341	0.296	1.234	nan	0.882	1.077	0.667	0.449	nan	0.731	0.899	0.588	1.073	6.383	3.997	2.117	5.445	5.754	3.560	1.656
8192	chr2	35531067	35540108	+	0	NA	Intergenic	ORR1C1|LTR|ERVL-MaLR	-22871	NM_001114125	69601	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	4.279	2.264	0.802	5.632	2.904	1.921	3.636	7.967	3.325	3.855	2.656	2.701	4.220	4.748	5.324	6.537	3.450	5.658	3.448	1.532	1.271	3.653	1.665	1.353	7.477
10596	chr4	131299322	131300837	+	0	NA	Intergenic	Intergenic	-289605	NR_130167	77835	Mm.348412	NR_130167	ENSMUSG00000086262	A930031H19Rik	A930004I12Rik	RIKEN cDNA A930031H19 gene	ncRNA	3.621	0.729	0.511	6.098	2.359	0.856	4.191	2.190	1.882	3.492	1.166	1.003	2.258	3.843	nan	3.014	1.546	2.879	9.601	6.576	3.751	11.540	9.158	5.679	3.779
2196	chr11	53582289	53588700	+	0	NA	intron (NM_001290805, intron 8 of 16)	intron (NM_001290805, intron 8 of 16)	18125	NM_001290806	16568	Mm.88694	NM_008443	ENSMUSG00000018395	Kif3a	Kif3|Kifl|Kns3	kinesin family member 3A	protein-coding	6.586	13.251	4.191	8.560	3.758	1.878	3.726	3.910	4.315	7.136	5.688	1.916	3.514	5.020	5.161	5.957	2.927	5.807	nan	2.439	1.683	3.678	2.696	2.009	7.772
14465	chr8	93917166	93922692	+	0	NA	intron (NM_001113384, intron 3 of 7)	intron (NM_001113384, intron 3 of 7)	92711	NM_011787	23802	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	2.101	2.795	2.096	2.187	3.698	1.337	1.925	4.465	1.978	1.570	2.241	1.429	4.358	2.873	2.976	2.477	1.811	2.951	0.742	0.912	0.473	0.864	0.850	0.347	1.374
1323	chr10	59239662	59241706	+	0	NA	Intergenic	(TTCC)n|Simple_repeat|Simple_repeat	18762	NM_172939	268301	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	2.977	1.292	0.130	4.540	3.032	1.878	1.742	1.485	3.668	5.089	0.850	0.562	3.550	5.162	3.090	3.482	1.518	5.153	nan	0.369	0.415	0.998	0.549	0.507	5.048
7296	chr18	61557845	61561857	+	0	NA	intron (NM_146087, intron 2 of 9)	intron (NM_146087, intron 2 of 9)	4269	NM_146087	93687	Mm.26908	NM_146087	ENSMUSG00000024576	Csnk1a1	2610208K14Rik|4632404G05Rik|5430427P18Rik|CK1a|Csnk1a	casein kinase 1, alpha 1	protein-coding	5.918	8.334	2.670	5.380	1.855	0.691	4.564	7.200	2.974	6.874	5.095	2.105	6.414	6.221	5.809	6.963	4.700	5.673	nan	0.876	1.858	nan	1.946	2.359	11.404
1455	chr10	76668333	76671339	+	0	NA	Intergenic	Intergenic	-46206	NM_001347207	12834	Mm.1949	NM_146007	ENSMUSG00000020241	Col6a2	Col6a-2	collagen, type VI, alpha 2	protein-coding	7.637	1.424	1.065	2.945	5.862	3.447	7.109	4.281	4.390	3.967	4.350	3.569	3.955	6.561	5.925	5.986	4.573	4.213	nan	2.629	2.111	2.957	0.881	1.047	6.641
6868	chr17	79134699	79136686	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	83786	NM_001316729	70536	Mm.293870	NM_027455	ENSMUSG00000024084	Qpct	5730422A13Rik	glutaminyl-peptide cyclotransferase (glutaminyl cyclase)	protein-coding	6.643	9.616	2.660	9.056	4.509	2.250	nan	5.268	nan	7.114	5.611	2.075	4.613	5.816	7.516	8.345	4.764	6.692	3.787	2.107	2.670	4.391	2.700	2.390	13.219
15540	chr9	114794621	114796011	+	0	NA	intron (NM_027294, intron 2 of 3)	intron (NM_027294, intron 2 of 3)	-13323	NM_001252479	102545	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	4.300	0.586	0.667	1.797	2.932	1.125	4.964	4.317	1.523	1.561	2.501	2.910	3.364	3.764	2.784	3.937	4.604	2.136	2.112	2.845	2.496	1.422	nan	2.211	3.696
4658	chr14	51549450	51551611	+	0	NA	Intergenic	L1M4|LINE|L1	-2260	NM_001013816	434459	Mm.359230	NM_001013816	ENSMUSG00000079244	Gm5622	EG434459	predicted gene 5622	protein-coding	6.201	12.571	3.721	7.967	3.122	2.069	4.616	7.572	3.426	8.050	4.730	2.816	4.100	7.052	6.630	8.853	3.460	6.895	4.604	3.275	2.811	5.822	2.707	2.330	10.210
10012	chr4	43012067	43014433	+	0	NA	Intergenic	ID_B1|SINE|B4	-2949	NM_053081	60534	Mm.23122	NM_053081	ENSMUSG00000028453	Fancg	AU041407|Xrcc9	Fanconi anemia, complementation group G	protein-coding	7.272	11.197	4.519	8.601	6.052	3.334	5.457	6.046	5.545	11.268	5.038	3.803	6.138	8.283	7.900	8.444	4.802	nan	6.235	3.159	2.572	nan	3.117	3.799	11.018
5638	chr15	99217038	99218548	+	0	NA	Intergenic	Intergenic	-7183	NM_010601	16512	Mm.374793	NM_010601	ENSMUSG00000037579	Kcnh3	AU019351|C030044P22Rik|Elk2|Kv12.2|Melk2	potassium voltage-gated channel, subfamily H (eag-related), member 3	protein-coding	3.528	1.301	0.797	2.813	1.517	1.631	2.657	4.453	1.552	1.888	1.030	1.409	3.577	3.529	3.368	2.844	3.026	2.804	1.232	1.449	1.105	1.963	1.237	0.744	2.532
9001	chr2	165967487	165969685	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-24051	NM_008679	17979	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	1.967	1.164	0.563	2.052	0.961	0.662	0.733	2.475	2.633	2.400	5.706	1.999	0.823	nan	1.255	1.205	0.577	nan	nan	0.793	0.781	2.139	0.722	1.081	nan
15773	chrX	96243881	96250914	+	0	NA	3' UTR (NM_177789, exon 7 of 7)	3' UTR (NM_177789, exon 7 of 7)	4580	NR_029801	723814		NR_029801	ENSMUSG00000076066	Mir223	Mirn223|miR-223|mmu-mir-223	microRNA 223	ncRNA	3.205	0.567	0.222	4.456	1.509	0.751	1.282	2.552	2.337	3.254	0.613	0.497	2.926	3.262	2.903	4.796	1.936	3.787	0.545	0.512	0.236	0.388	0.296	0.136	4.462
3560	chr12	86086356	86090011	+	0	NA	intron (NM_001199843, intron 2 of 8)	intron (NM_001199843, intron 2 of 8)	5622	NM_001199843	76411	Mm.292345	NM_029601	ENSMUSG00000007867	Ift43	1700019E19Rik|R75064	intraflagellar transport 43	protein-coding	7.112	1.231	0.977	2.825	4.480	3.388	3.071	2.004	3.514	3.691	1.190	1.026	2.679	6.609	3.661	3.216	4.167	3.859	0.537	1.095	1.617	0.592	0.694	0.555	6.158
10714	chr4	135562329	135563969	+	0	NA	intron (NM_001013756, intron 1 of 15)	intron (NM_001013756, intron 1 of 15)	10471	NM_001013756	230824	Mm.331972	NM_001013756	ENSMUSG00000037188	Grhl3	AI561912|Get1|Som|Tfcp2l4|ct	grainyhead-like 3 (Drosophila)	protein-coding	2.993	2.302	1.265	3.105	5.268	4.618	6.955	5.127	4.555	3.984	3.161	1.894	5.979	5.991	5.111	5.084	2.798	4.749	1.320	0.732	0.671	1.157	nan	1.607	4.075
1134	chr10	19567305	19572502	+	0	NA	Intergenic	Intergenic	-22046	NM_010511	15979	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0.366	1.638	0.443	0.590	0.282	0.156	0.407	0.184	nan	0.500	0.307	0.157	0.250	nan	0.307	0.537	0.440	0.428	11.485	5.445	3.765	9.185	8.440	7.528	nan
10191	chr4	70205678	70207940	+	0	NA	Intergenic	Intergenic	203626	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	5.269	0.709	0.347	3.711	1.639	0.734	2.636	2.342	3.659	3.657	5.423	1.008	3.562	5.189	3.403	5.094	3.118	5.362	1.460	2.852	0.878	1.225	nan	0.586	3.719
3853	chr13	15160406	15163417	+	0	NA	Intergenic	L1_Rod|LINE|L1	-301812	NM_008130	14634	Mm.5098	NM_008130	ENSMUSG00000021318	Gli3	AI854843|AU023367|Bph|GLI3-190|GLI3FL|Pdn|Xt|add	GLI-Kruppel family member GLI3	protein-coding	2.498	0.236	0.523	1.705	3.703	3.906	2.193	0.596	1.149	1.137	0.452	0.289	2.215	nan	0.865	0.635	nan	1.811	0.604	1.856	1.613	0.317	1.481	2.160	nan
13577	chr7	117323888	117326817	+	0	NA	Intergenic	(GGGA)n|Simple_repeat|Simple_repeat	-55627	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	1.020	7.439	8.034	0.869	0.918	0.784	0.874	0.831	0.855	0.690	0.979	0.985	0.440	nan	0.818	0.647	1.084	0.943	0.537	0.981	1.288	0.463	0.866	0.757	0.772
4131	chr13	52067398	52068663	+	0	NA	Intergenic	Intergenic	-28711	NR_045061	74050	Mm.84860	NR_045061		4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	2.648	0.853	0.505	nan	1.876	0.763	1.863	3.871	1.445	2.134	2.351	0.732	1.704	3.110	2.504	2.427	1.388	nan	2.285	nan	0.678	1.646	1.418	0.527	2.874
4455	chr14	8772166	8777356	+	0	NA	Intergenic	Lx5|LINE|L1	108371	NR_045968	74859	Mm.84041	NR_045968	ENSMUSG00000097898	4930455B14Rik	1700027C12Rik	RIKEN cDNA 4930455B14 gene	ncRNA	1.856	1.429	0.378	2.196	1.554	0.380	3.306	4.251	4.201	4.206	3.835	5.144	4.897	5.355	4.768	6.781	1.567	3.957	1.282	0.473	0.378	2.483	0.605	0.530	5.121
5201	chr15	58235675	58241818	+	0	NA	Intergenic	Intergenic	-23854	NM_026346	67731	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0.663	7.104	5.583	nan	0.313	0.255	nan	nan	nan	nan	0.760	0.903	0.632	0.414	0.751	nan	0.672	0.565	0.940	1.025	0.977	1.198	0.985	1.125	0.568
5595	chr15	96524211	96531479	+	0	NA	Intergenic	Intergenic	-67002	NM_028148	72193	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	7.726	6.848	3.080	8.090	3.554	2.366	10.504	11.918	5.704	8.292	5.759	4.674	9.662	8.869	10.317	9.269	9.236	7.171	6.444	2.843	2.866	6.141	3.866	3.959	10.281
11275	chr5	65498138	65506173	+	0	NA	Intergenic	B1_Mur4|SINE|Alu	-9320	NM_133697	68552	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	4.525	2.541	1.071	7.270	3.235	2.121	3.078	2.707	4.031	4.591	2.051	0.884	3.719	4.653	4.776	5.157	3.502	5.549	1.211	1.039	1.006	nan	0.949	1.057	4.667
8709	chr2	136743863	136747768	+	0	NA	intron (NM_011428, intron 1 of 7)	intron (NM_011428, intron 1 of 7)	32365	NM_001291056	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	2.685	1.511	0.800	1.633	1.101	0.694	2.362	5.185	2.632	2.770	6.521	3.841	2.833	3.193	3.177	5.429	2.490	3.806	1.167	0.759	0.547	0.803	0.574	0.534	3.740
1377	chr10	67246914	67253150	+	0	NA	intron (NM_207221, intron 24 of 25)	intron (NM_207221, intron 24 of 25)	35249	NM_001036293	641340	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	6.031	0.726	0.542	2.929	3.854	1.834	5.123	6.097	4.400	4.834	1.488	1.360	5.002	6.249	5.833	4.804	4.418	5.368	0.634	0.986	0.457	0.676	0.526	0.385	4.040
4663	chr14	52631993	52643933	+	0	NA	Intergenic	Intergenic	-142268	NM_001170918	57269	Mm.88822	NM_020512	ENSMUSG00000059887	Olfr1507	MOR244-1|Mor28|Or28	olfactory receptor 1507	protein-coding	6.669	5.003	1.628	5.673	3.223	1.810	5.965	9.253	4.217	8.118	4.293	2.710	6.246	7.977	7.742	8.112	4.763	6.827	2.972	1.899	1.619	3.522	2.294	1.953	10.004
7175	chr18	38330132	38332183	+	0	NA	intron (NM_011937, intron 5 of 6)	intron (NM_011937, intron 5 of 6)	7836	NM_011937	26384	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	7.166	1.612	0.600	4.185	2.227	1.147	8.573	10.206	2.449	2.576	2.493	1.470	5.907	5.531	5.344	nan	3.768	5.635	2.314	0.914	1.165	2.051	1.243	1.019	4.250
13592	chr7	117927502	117931847	+	0	NA	Intergenic	Intergenic	186473	NM_170669	267019	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	4.113	1.189	0.663	5.589	3.242	2.069	2.454	6.066	2.180	2.418	1.695	1.666	3.572	3.533	2.515	2.448	1.848	4.113	2.709	0.920	1.260	2.645	2.218	2.123	3.105
185	chr1	54882792	54884158	+	0	NA	intron (NM_001081433, intron 1 of 27)	intron (NM_001081433, intron 1 of 27)	42912	NM_001081433	329154	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	4.973	1.534	0.420	4.400	1.494	0.183	2.889	2.501	2.687	2.902	4.310	0.821	3.996	4.454	4.323	7.923	2.362	5.484	0.631	0.769	0.269	1.080	0.203	0.171	4.845
10202	chr4	81372501	81374921	+	0	NA	intron (NM_010820, intron 10 of 46)	Lx9|LINE|L1	69104	NM_010820	17475	Mm.153039	NM_010820	ENSMUSG00000028402	Mpdz	AI225843|B930003D11Rik|MUPP1	multiple PDZ domain protein	protein-coding	0.577	1.520	0.851	0.692	0.229	0.180	0.393	0.445	0.344	0.375	0.433	0.390	0.331	0.333	0.324	0.491	0.522	0.520	nan	6.669	5.415	20.162	1.208	0.820	0.362
5122	chr15	37064038	37066330	+	0	NA	Intergenic	LTRIS2|LTR|ERV1	-57782	NM_026521	68036	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	7.346	3.085	0.702	6.220	3.820	2.316	9.878	12.166	4.780	7.123	8.073	4.030	10.625	8.027	8.782	8.541	9.687	9.746	7.131	3.673	4.516	8.584	5.786	7.175	9.997
5547	chr15	86011518	86020993	+	0	NA	intron (NM_009886, intron 1 of 34)	intron (NM_009886, intron 1 of 34)	17522	NM_009886	12614	Mm.22680	NM_009886	ENSMUSG00000016028	Celsr1	Adgrc1|Crsh|Scy|crash	cadherin, EGF LAG seven-pass G-type receptor 1	protein-coding	7.498	13.560	5.830	8.826	4.371	3.114	6.500	8.711	4.966	8.276	4.504	3.803	6.388	7.814	6.619	nan	nan	6.378	nan	3.315	3.184	6.704	3.052	2.814	nan
13053	chr7	28953506	28955686	+	0	NA	intron (NM_021895, intron 1 of 20)	B1_Mus2|SINE|Alu	7684	NM_021895	60595	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	8.856	8.701	3.696	8.187	4.221	1.880	7.084	9.580	5.070	7.464	6.197	4.625	7.603	10.304	8.907	9.743	8.539	7.493	4.940	3.356	2.070	5.808	3.157	2.711	11.140
11179	chr5	36715452	36719302	+	0	NA	Intergenic	Intergenic	-21356	NM_001081232	320661	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	4.355	4.372	4.170	2.101	2.449	1.705	6.765	4.790	2.091	3.457	5.693	3.526	4.200	6.221	nan	4.735	3.773	nan	3.220	2.729	1.781	2.548	5.526	3.942	3.741
8433	chr2	90936097	90940342	+	0	NA	Intergenic	Intergenic	-2178	NM_198683	13046	Mm.29495	NM_017368	ENSMUSG00000005506	Celf1	1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|Cugbp1|D2Wsu101e|HNAB50|NAB50	CUGBP, Elav-like family member 1	protein-coding	7.548	9.741	3.466	5.624	3.013	1.317	2.766	2.422	2.987	5.183	3.419	1.082	3.044	6.430	3.931	5.484	4.557	4.651	0.818	2.445	1.119	0.676	1.144	0.578	8.339
4	chr1	6346568	6352586	+	0	NA	Intergenic	Intergenic	-9754	NM_001195732	620393	Mm.388992	NM_001195732	ENSMUSG00000087247	Fam150a	EG620393	family with sequence similarity 150, member A	protein-coding	10.292	0.390	0.348	3.491	2.385	1.634	0.591	1.203	5.628	8.802	1.840	0.703	5.493	5.986	2.539	7.183	7.390	7.166	0.536	1.001	0.553	0.573	0.703	0.547	8.941
2716	chr11	97047888	97050395	+	0	NA	TTS (NM_026154)	TTS (NM_026154)	-1487	NM_001310509	71240	Mm.190450	NM_001081434	ENSMUSG00000038534	Osbpl7	4933437E18Rik	oxysterol binding protein-like 7	protein-coding	8.168	13.553	4.070	7.909	3.578	2.854	7.683	6.269	3.513	9.105	6.469	3.582	5.232	8.464	7.677	8.258	nan	6.805	6.060	nan	4.126	5.945	nan	nan	10.726
127	chr1	39480888	39487827	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-5610	NM_018775	54610	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	6.532	1.084	0.456	3.813	3.697	2.380	4.143	4.308	4.901	7.529	4.241	1.745	5.563	6.139	4.597	8.033	4.758	7.515	1.718	1.089	0.852	1.296	1.124	0.765	5.284
6942	chr17	87199195	87202712	+	0	NA	Intergenic	Intergenic	-6011	NR_046016	399626	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	5.006	1.480	0.611	6.561	2.433	2.267	4.701	5.291	4.108	3.965	1.991	2.373	2.761	4.014	6.014	6.390	4.046	5.688	0.957	0.885	0.754	0.783	0.533	0.566	5.003
12890	chr6	149114796	149117751	+	0	NA	Intergenic	Intergenic	-14593	NM_177192	320560	Mm.426874	NM_177192	ENSMUSG00000030313	Dennd5b	9330160C06Rik|AI852444|D030011O10Rik|ENSMUSG00000072657|Gm17524	DENN/MADD domain containing 5B	protein-coding	nan	0.580	0.616	nan	6.938	5.609	3.869	nan	2.121	nan	0.674	1.185	nan	6.593	1.745	nan	4.011	2.578	0.730	nan	0.380	nan	0.728	0.595	nan
1648	chr10	95139816	95145695	+	0	NA	intron (NR_131146, intron 2 of 3)	intron (NR_131146, intron 2 of 3)	3070	NR_131146	628062		NR_131146		Gm29684	-	predicted gene, 29684	ncRNA	4.341	2.491	1.022	3.022	2.225	1.112	3.488	4.540	2.284	3.434	nan	1.131	3.866	4.270	5.038	3.665	3.415	3.468	nan	1.711	1.054	nan	1.493	0.798	3.304
3596	chr12	88139201	88150612	+	0	NA	Intergenic	L1Md_Gf|LINE|L1	36988	NM_001105254	100039315	Mm.426539	NM_001105254	ENSMUSG00000066027	Gm10436	ENSMUSG00000072907	predicted gene 10436	protein-coding	9.436	3.708	1.301	5.473	4.327	2.746	8.059	6.598	3.677	4.838	4.233	3.504	5.933	7.472	6.235	nan	7.562	5.113	7.834	5.808	4.980	8.455	7.773	6.748	10.271
15561	chr9	117158135	117162899	+	0	NA	intron (NM_001172122, intron 1 of 13)	intron (NM_001172122, intron 1 of 13)	91966	NM_001172123	207181	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding	9.522	1.445	0.762	5.790	3.535	1.886	8.810	5.715	6.590	8.160	6.248	3.784	7.198	9.544	7.414	10.059	7.608	8.336	3.022	2.008	1.915	1.596	7.798	8.064	10.341
10618	chr4	131977198	131979374	+	0	NA	intron (NM_001128606, intron 9 of 17)	B2_Mm2|SINE|B2	56515	NM_001201367	623230	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	7.469	8.181	2.976	8.555	3.525	2.908	6.223	6.515	4.777	11.189	6.367	4.676	7.672	9.181	8.341	8.834	5.222	8.275	5.719	4.285	4.385	8.216	5.022	6.547	11.592
10408	chr4	116392783	116394692	+	0	NA	intron (NM_008641, intron 3 of 28)	intron (NM_008641, intron 3 of 28)	70444	NM_001042743	17776	Mm.9287	NM_008641	ENSMUSG00000003810	Mast2	MAST205|Mtssk	microtubule associated serine/threonine kinase 2	protein-coding	3.987	6.896	2.734	6.147	3.746	1.034	3.495	4.109	3.309	5.309	2.547	1.977	4.067	5.791	5.005	5.759	2.242	5.826	3.121	2.916	1.615	3.687	2.847	2.638	7.172
2266	chr11	59952850	59956067	+	0	NA	intron (NM_138675, intron 1 of 1)	intron (NM_138675, intron 1 of 1)	6244	NM_138675	192191	Mm.125288	NM_138675	ENSMUSG00000061650	Med9	BC019367|Med25	mediator complex subunit 9	protein-coding	4.409	1.062	0.606	2.371	1.256	0.886	9.063	8.289	2.285	3.922	2.119	2.205	4.689	5.088	6.232	5.039	4.760	4.115	5.530	3.085	3.016	5.159	5.060	4.861	7.340
14027	chr8	12755606	12761972	+	0	NA	intron (NR_121603, intron 1 of 29)	intron (NR_121603, intron 1 of 29)	1773	NM_001293667	50770	Mm.257837	NM_015804	ENSMUSG00000031441	Atp11a	4930558F19Rik|AU040868|Atpc1h|Ih	ATPase, class VI, type 11A	protein-coding	8.677	3.638	1.519	10.057	7.320	4.895	6.192	8.443	7.280	13.140	4.257	1.835	9.890	10.501	10.287	11.738	7.986	12.149	2.734	1.925	2.178	4.367	2.503	2.488	15.003
6043	chr16	34920757	34923107	+	0	NA	exon (NM_139300, exon 16 of 32)	exon (NM_139300, exon 16 of 32)	17397	NR_040536	76649	Mm.420532	NR_040536	ENSMUSG00000100593	1700119H24Rik	-	RIKEN cDNA 1700119H24 gene	ncRNA	3.052	2.510	0.628	5.844	1.438	0.700	1.965	1.537	1.713	2.455	1.525	0.371	2.191	3.415	2.207	6.323	2.695	3.618	0.668	1.105	0.481	0.900	0.537	0.324	5.031
2915	chr11	106858015	106861967	+	0	NA	intron (NM_025481, intron 5 of 18)	B1F|SINE|Alu	60724	NM_025481	66313	Mm.340955	NM_025481	ENSMUSG00000018363	Smurf2	2810411E22Rik|AI558114|AI649275	SMAD specific E3 ubiquitin protein ligase 2	protein-coding	4.172	7.962	5.216	nan	5.182	5.745	4.075	4.727	nan	nan	2.970	2.394	3.133	5.895	5.737	4.726	4.803	nan	5.528	4.266	6.279	nan	6.192	7.291	4.950
7671	chr19	26679201	26682757	+	0	NA	intron (NM_011416, intron 17 of 32)	intron (NM_011416, intron 17 of 32)	-67186	NM_001347439	67155	Mm.342988	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	nan	10.572	3.071	10.291	2.873	1.865	2.178	3.645	4.061	9.125	5.508	2.754	2.106	3.823	4.867	7.276	2.653	7.136	nan	2.080	3.224	3.982	nan	3.719	13.090
11042	chr5	20447763	20462394	+	0	NA	intron (NM_001170746, intron 9 of 22)	intron (NM_001170746, intron 9 of 22)	427046	NM_172992	68770	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	5.117	8.041	5.334	4.775	4.386	3.624	3.956	3.973	3.619	4.880	4.150	4.351	4.103	4.455	3.981	3.838	3.737	4.154	2.852	2.658	2.957	2.309	3.164	3.247	3.895
5759	chr16	4893816	4898413	+	0	NA	intron (NM_029657, intron 1 of 16)	intron (NM_029657, intron 1 of 16)	10014	NM_001252437	17237	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	5.419	2.422	1.106	4.181	4.705	3.123	3.565	4.952	4.115	4.275	2.072	1.089	5.895	6.941	3.946	5.330	2.817	6.253	0.724	1.006	0.733	0.850	0.822	0.842	6.264
6497	chr17	29298887	29310104	+	0	NA	Intergenic	Intergenic	-14387	NM_023734	74116	Mm.30950	NM_023734	ENSMUSG00000024011	Pi16	1200009H11Rik|Cripi|PI-16	peptidase inhibitor 16	protein-coding	1.429	13.224	5.645	1.830	1.026	0.566	1.918	2.879	1.164	1.584	2.026	1.083	1.252	1.923	1.995	nan	1.054	1.628	1.538	1.150	1.155	2.037	1.028	0.950	2.209
9997	chr4	40815144	40817319	+	0	NA	intron (NM_022305, intron 2 of 5)	PB1D9|SINE|Alu	33907	NR_039584	100628614		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	4.938	1.859	1.120	4.028	2.605	1.834	3.156	4.403	4.632	4.045	2.833	1.522	4.932	6.242	5.210	nan	4.107	5.127	2.038	1.275	0.563	1.218	1.115	0.704	5.467
11870	chr5	139649882	139654129	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	84328	NM_174850	231830	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	1.768	1.611	0.862	1.701	1.282	1.078	3.588	3.202	2.287	2.575	0.670	0.590	2.909	3.995	4.165	4.376	2.846	2.642	1.153	0.844	0.548	1.567	nan	0.972	4.736
12637	chr6	117885287	117888265	+	0	NA	Intergenic	ORR1A1|LTR|ERVL-MaLR	-13564	NM_001166432	98758	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	4.085	1.219	0.608	2.288	3.302	2.045	4.029	4.312	2.230	2.592	1.963	0.855	5.316	6.974	4.044	6.403	3.167	4.628	0.864	0.618	0.823	0.975	nan	0.411	7.346
10296	chr4	97757397	97759770	+	0	NA	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-19043	NM_001122953	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	4.165	nan	0.807	4.576	3.350	0.876	1.536	1.542	nan	4.345	1.363	1.218	1.644	2.885	nan	2.326	1.251	3.367	1.425	1.412	1.446	nan	0.797	0.566	4.301
5408	chr15	78662248	78667575	+	0	NA	Intergenic	Intergenic	53202	NM_183141	207393	Mm.323188	NM_183141	ENSMUSG00000043460	Elfn2	6330514E13|AW048948|BC094219|Lrrc62|Ppp1r29	leucine rich repeat and fibronectin type III, extracellular 2	protein-coding	4.287	nan	0.707	6.619	1.536	1.201	2.865	3.560	2.273	3.039	nan	1.286	2.275	3.066	2.466	3.076	nan	3.760	1.050	1.371	1.591	nan	0.849	0.640	4.675
4963	chr14	120706092	120721210	+	0	NA	Intergenic	Intergenic	-197543	NM_023579	70572	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5	importin 5	protein-coding	4.517	1.249	0.558	4.108	3.245	1.667	3.829	5.476	3.791	4.120	4.589	2.142	4.135	6.949	nan	6.399	3.315	5.502	3.256	2.038	1.080	3.016	2.307	1.370	6.138
5345	chr15	75864749	75868037	+	0	NA	exon (NM_026960, exon 8 of 11)	exon (NM_026960, exon 8 of 11)	4054	NM_026960	69146	Mm.27385	NM_026960	ENSMUSG00000022575	Gsdmd	1810036L03Rik|AW558049|DF5L|Dfna5l|Gsdmdc1|M2-4	gasdermin D	protein-coding	3.470	nan	0.487	nan	1.486	0.540	3.048	9.255	1.967	nan	nan	2.557	4.191	4.321	3.004	3.055	2.648	3.537	0.933	0.804	0.508	nan	0.778	0.907	5.138
3588	chr12	87299129	87301610	+	0	NA	promoter-TSS (NM_001290302)	promoter-TSS (NM_001290302)	-664	NM_001290302	217738	Mm.219363	NM_001290302	ENSMUSG00000050671	Ism2	Gm264|Thsd3	isthmin 2	protein-coding	4.247	5.195	1.427	5.574	1.038	0.654	2.773	1.480	3.787	3.936	6.870	4.190	4.230	4.216	3.637	4.836	3.374	7.131	3.767	1.136	0.719	3.980	1.025	0.850	7.677
722	chr1	145565329	145567568	+	0	NA	Intergenic	Intergenic	-791027	NM_022881	64214	Mm.253927	NM_022881	ENSMUSG00000026357	Rgs18	-	regulator of G-protein signaling 18	protein-coding	4.916	0.482	0.160	1.696	3.197	2.028	7.407	6.549	3.268	4.542	0.486	1.447	6.118	5.188	6.043	8.984	7.449	3.316	0.821	0.495	0.583	0.585	0.429	0.598	2.143
7704	chr19	32372354	32373488	+	0	NA	intron (NM_144792, intron 1 of 9)	B2_Mm2|SINE|B2	15533	NM_144792	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	2.626	1.113	0.202	2.412	2.531	1.283	5.267	6.301	4.272	3.099	1.628	1.506	2.396	3.361	4.438	5.959	4.440	4.553	nan	0.556	0.443	1.201	1.118	0.630	2.374
13395	chr7	88828452	88834683	+	0	NA	Intergenic	L1_Mus1|LINE|L1	401294	NM_028238	72433	Mm.276669	NM_028238	ENSMUSG00000030559	Rab38	2310011F14Rik|AU043391|cht	RAB38, member RAS oncogene family	protein-coding	0.772	0.601	0.445	0.543	0.427	0.289	1.198	2.020	nan	1.193	0.251	0.348	1.559	0.784	1.180	nan	nan	nan	1.997	1.501	0.783	nan	1.246	0.732	nan
4060	chr13	45601598	45605121	+	0	NA	intron (NM_001199304, intron 5 of 6)	intron (NM_001199304, intron 5 of 6)	95915	NM_025508	66355	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	4.169	0.940	0.425	2.996	3.473	1.696	4.379	2.318	3.246	4.186	1.504	1.335	4.318	7.388	5.477	6.687	3.950	4.191	2.319	nan	1.551	2.608	2.359	2.112	9.463
1597	chr10	92590730	92592207	+	0	NA	Intergenic	HAL1ME|LINE|L1	130950	NM_008682	17997	Mm.2998	NM_008682	ENSMUSG00000019988	Nedd1	-	neural precursor cell expressed, developmentally down-regulated gene 1	protein-coding	nan	0.990	0.686	2.373	1.710	0.881	0.408	0.436	1.178	1.680	0.307	0.779	0.905	nan	1.164	1.296	0.729	nan	0.536	0.907	0.588	nan	nan	0.481	1.689
12944	chr7	17198577	17200444	+	0	NA	Intergenic	RMER19B|LTR|ERVK	-3967	NM_054064	114872	Mm.322280	NM_054064	ENSMUSG00000023159	Psg29	AA102956|AA409969|cea17	pregnancy-specific glycoprotein 29	protein-coding	8.258	12.844	4.230	9.481	6.218	4.010	7.004	9.105	4.789	14.712	6.457	3.222	6.478	8.915	7.414	8.507	4.838	8.789	5.352	7.365	4.515	5.359	7.797	7.586	16.277
13122	chr7	35013042	35020932	+	0	NA	intron (NM_008820, intron 9 of 14)	intron (NM_008820, intron 9 of 14)	39579	NM_009884	12611	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	6.207	5.282	2.567	4.486	5.764	4.276	5.278	11.196	4.311	6.494	4.018	4.123	5.149	6.646	5.965	6.237	5.771	5.702	4.018	2.588	3.016	5.314	3.084	2.804	6.751
13986	chr8	10964596	10966554	+	0	NA	Intergenic	Intergenic	-37118	NR_135302	665306	Mm.358758	NR_030715	ENSMUSG00000038917	3930402G23Rik	-	RIKEN cDNA 3930402G23 gene	ncRNA	3.615	1.056	1.089	2.865	4.821	2.819	4.526	4.602	3.224	3.482	1.517	2.428	3.379	4.695	4.395	4.250	4.304	3.261	1.571	3.089	2.677	4.799	1.865	1.950	2.555
6911	chr17	84511273	84521461	+	0	NA	intron (NM_177606, intron 1 of 29)	L1Md_A|LINE|L1	4472	NM_177606	213556	Mm.215159	NM_177606	ENSMUSG00000040852	Plekhh2	AI256725|E030001K05|mKIAA2028	pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	protein-coding	6.216	14.447	5.071	7.054	2.969	1.576	3.950	4.978	4.171	5.304	7.797	2.589	3.899	5.904	5.531	4.922	3.151	4.589	1.234	1.666	1.186	2.033	1.260	0.917	7.465
14193	chr8	46041173	46050370	+	0	NA	intron (NM_207213, intron 11 of 17)	intron (NM_207213, intron 11 of 17)	35169	NM_026278	67620	Mm.383914	NM_026278	ENSMUSG00000031637	Lrp2bp	1700113N17Rik|2310006J04Rik|4930479L12Rik|MegBP	Lrp2 binding protein	protein-coding	1.274	0.729	0.411	0.932	1.215	0.682	0.656	2.169	0.965	0.988	1.025	0.690	1.390	1.360	1.509	1.972	1.258	1.563	6.308	5.044	2.828	7.244	4.540	3.458	1.642
15553	chr9	116185261	116187639	+	0	NA	Intergenic	MTE2b|LTR|ERVL-MaLR	-11087	NM_009371	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	4.889	1.024	0.601	3.620	2.433	1.305	3.686	3.281	3.778	3.614	1.959	0.772	3.731	4.984	3.899	4.738	4.169	4.613	0.789	0.976	0.899	0.510	nan	0.789	4.785
10401	chr4	115892387	115895697	+	0	NA	Intergenic	Intergenic	9642	NM_001320545	654462	Mm.388913	NM_001039124	ENSMUSG00000073774	Kncn	Kino|L5	kinocilin	protein-coding	11.098	7.263	3.910	7.876	6.633	4.462	7.078	5.709	6.661	8.152	6.319	4.671	4.895	10.273	8.279	9.403	7.108	9.556	10.983	6.574	5.859	8.948	7.478	7.444	13.156
11734	chr5	125626593	125633190	+	0	NA	intron (NM_001190352, intron 2 of 8)	intron (NM_001190352, intron 2 of 8)	97473	NM_001190352	208151	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding	1.737	2.148	0.678	2.502	1.268	0.845	1.435	1.531	1.866	2.511	2.234	1.308	1.549	2.091	nan	2.391	nan	2.513	6.244	2.700	2.518	4.458	nan	2.894	4.174
14340	chr8	74791528	74795920	+	0	NA	Intergenic	Intergenic	-79450	NM_027837	71597	Mm.158735	NM_027837	ENSMUSG00000031621	Isx	9130012O13Rik|Pix-1	intestine specific homeobox	protein-coding	3.093	6.413	3.651	7.250	2.374	1.692	nan	2.178	nan	2.115	1.213	1.430	1.039	2.115	1.695	nan	1.807	2.923	0.472	1.660	1.893	nan	0.520	0.501	nan
14412	chr8	87221304	87238529	+	0	NA	Intergenic	Intergenic	-30066	NR_040697	100038706	Mm.334690	NR_040697	ENSMUSG00000099207	Gm10637	ENSMUSG00000074176	predicted gene 10637	ncRNA	5.892	5.161	1.701	5.533	2.304	1.574	4.512	7.356	nan	5.040	1.635	1.716	5.403	5.383	5.368	7.211	5.742	4.414	nan	1.660	1.590	3.524	0.762	0.721	8.191
153	chr1	46907912	46914397	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	-57645	NM_172653	227059	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	9.275	6.203	1.749	4.713	2.935	1.809	6.927	5.389	4.478	8.756	5.447	2.883	8.705	7.461	6.488	nan	7.619	nan	nan	1.370	1.096	2.331	1.627	1.657	7.587
9377	chr3	68807727	68813511	+	0	NA	Intergenic	Intergenic	-58967	NM_001167996	68725	Mm.45741	NM_001167996	ENSMUSG00000046999	1110032F04Rik	AI115547	RIKEN cDNA 1110032F04 gene	protein-coding	7.847	15.988	6.212	7.663	3.545	2.321	5.016	3.788	4.393	6.570	5.555	2.801	7.432	6.593	6.734	nan	4.951	7.920	7.527	3.058	2.601	6.051	5.283	4.272	10.536
2932	chr11	108203997	108205773	+	0	NA	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	139003	NM_011101	18750	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	6.670	11.357	2.578	8.635	4.404	3.550	6.521	8.617	5.190	12.864	4.874	4.988	6.122	7.626	8.752	8.346	5.419	8.465	6.213	3.132	4.721	5.627	5.766	9.630	15.609
14490	chr8	96964490	96968136	+	0	NA	Intergenic	RMER17A|LTR|ERVK	-420340	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	2.220	8.578	4.039	3.215	2.328	1.351	0.743	0.977	2.224	1.817	0.842	0.666	1.734	1.664	1.531	2.282	0.925	2.277	0.820	0.640	0.648	1.091	0.456	0.623	2.511
9282	chr3	51654323	51656273	+	0	NA	Intergenic	Intergenic	-5881	NM_174995	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.788	0.576	0.467	1.711	0.982	0.478	1.704	1.620	1.404	1.027	0.876	1.006	1.415	1.381	2.109	2.114	1.438	2.377	3.542	4.636	2.130	5.004	5.313	2.579	1.689
2387	chr11	69792616	69797459	+	0	NA	intron (NM_009601, intron 2 of 10)	intron (NM_009601, intron 2 of 10)	900	NM_009601	11443	Mm.86425	NM_009601	ENSMUSG00000041189	Chrnb1	Achr-2|Acrb	cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)	protein-coding	7.398	8.680	3.257	7.289	3.954	2.385	6.620	6.804	3.972	7.353	5.036	3.227	5.855	8.517	7.892	8.967	5.685	6.770	3.822	2.775	2.849	5.441	3.002	3.116	9.476
14846	chr9	7772153	7776031	+	0	NA	intron (NM_133739, intron 2 of 4)	intron (NM_133739, intron 2 of 4)	10015	NM_133739	71929	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	4.628	2.000	1.117	1.624	0.850	0.459	2.760	3.434	1.813	1.903	1.567	1.010	2.763	1.966	3.048	3.469	3.457	3.088	7.648	1.953	1.229	1.374	5.133	3.701	3.883
101	chr1	36765091	36767305	+	0	NA	promoter-TSS (NM_001289765)	promoter-TSS (NM_001289765)	-736	NM_001289765	22637	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	6.728	6.669	1.673	5.477	3.262	1.606	5.287	7.134	4.137	6.228	3.643	1.872	5.083	7.563	6.904	11.862	5.271	6.631	3.906	1.536	1.376	5.016	2.111	1.809	11.212
340	chr1	78316538	78320283	+	0	NA	intron (NM_001004173, intron 1 of 4)	intron (NM_001004173, intron 1 of 4)	8064	NM_001004173	433323	Mm.276248	NM_001004173	ENSMUSG00000032908	Sgpp2	SPPase2|Spp2	sphingosine-1-phosphate phosphotase 2	protein-coding	6.113	0.465	0.517	1.452	1.631	1.038	5.529	5.294	2.902	2.098	0.445	0.332	6.663	4.150	3.535	6.674	5.139	3.519	nan	nan	0.262	0.256	nan	0.634	3.595
4362	chr13	103682311	103697417	+	0	NA	intron (NR_136924, intron 1 of 3)	(GAAA)n|Simple_repeat|Simple_repeat	17769	NR_136924	102632492	Mm.383874	NR_136924		Gm30551	Gm30710	predicted gene, 30551	ncRNA	nan	nan	4.145	5.705	4.273	2.277	3.942	5.434	nan	nan	7.472	4.560	4.931	6.030	5.325	6.456	4.241	nan	7.224	4.670	3.098	nan	5.395	3.982	6.591
6403	chr17	24869504	24878052	+	0	NA	Intergenic	RLTR20C|LTR|ERVK	-4992	NM_008340	16005	Mm.3135	NM_008340	ENSMUSG00000046070	Igfals	ALS|Albs|mKIAA4111	insulin-like growth factor binding protein, acid labile subunit	protein-coding	3.977	2.760	1.315	4.131	3.310	2.074	4.484	6.884	2.943	3.661	3.037	1.515	3.058	5.181	5.946	nan	4.109	4.572	3.673	2.176	2.477	3.482	2.985	2.410	7.116
9039	chr2	167764389	167779909	+	0	NA	Intergenic	Intergenic	80972	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	6.871	9.262	2.659	6.762	3.962	2.269	4.255	8.575	5.579	6.824	5.862	2.895	6.395	8.512	6.164	6.797	4.653	nan	nan	2.984	2.405	6.522	3.484	2.904	7.723
3655	chr12	103266615	103268674	+	0	NA	Intergenic	Intergenic	-25498	NM_133364	170952	Mm.217019	NM_133364	ENSMUSG00000041669	Prima1	B230212M13Rik|BB120497|PRiMA	proline rich membrane anchor 1	protein-coding	3.071	0.508	0.256	nan	1.295	1.427	1.546	nan	nan	2.663	0.392	0.241	2.318	5.269	3.264	4.082	3.575	1.357	0.594	0.351	0.541	1.021	0.233	0.451	2.620
4012	chr13	41022601	41024190	+	0	NA	TTS (NM_025387)	TTS (NM_025387)	7145	NM_025387	66154	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	5.169	nan	0.514	2.962	2.288	1.290	4.886	5.066	nan	nan	3.131	1.839	3.945	4.106	3.888	nan	2.864	nan	0.844	0.950	0.882	0.969	1.054	0.667	4.019
5752	chr16	4721887	4723159	+	0	NA	Intergenic	Intergenic	-3167	NM_001290761	67824	Mm.28451	NM_026393	ENSMUSG00000063445	Nmral1	1110025F24Rik|AI256624	NmrA-like family domain containing 1	protein-coding	6.001	12.320	3.840	5.154	1.517	0.453	1.932	5.200	4.245	4.228	2.587	0.682	4.612	3.799	5.177	6.367	3.004	5.253	3.252	1.689	0.615	3.913	1.413	0.603	5.202
7204	chr18	39896508	39898445	+	0	NA	Intergenic	Intergenic	123979	NM_011033	18459	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	3.528	0.959	1.120	2.259	4.014	2.029	4.361	5.345	3.232	3.318	2.040	3.576	5.375	4.980	4.879	3.668	2.924	5.663	0.990	0.722	0.276	0.776	0.510	0.431	1.904
8133	chr2	32273497	32286349	+	0	NA	intron (NM_175190, intron 4 of 4)	intron (NM_175190, intron 4 of 4)	8146	NR_110965	72931	Mm.27344	NM_175190	ENSMUSG00000044627	Swi5	1500019F05Rik|2900010J23Rik|AI046671	SWI5 recombination repair homolog (yeast)	protein-coding	6.135	1.998	0.630	5.901	4.668	2.879	4.560	9.654	nan	4.532	2.862	2.171	5.519	6.019	6.484	9.684	5.509	7.529	2.650	1.371	1.328	3.442	1.621	1.050	7.789
3536	chr12	81977963	81982301	+	0	NA	intron (NM_018814, intron 25 of 35)	intron (NM_018814, intron 25 of 35)	120102	NM_018814	54604	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog (Drosophila)	protein-coding	4.770	1.644	0.647	3.483	2.279	0.804	2.895	2.430	3.425	3.252	5.057	1.527	3.286	4.952	3.516	4.325	2.778	4.041	1.473	1.101	0.558	1.977	0.675	0.493	6.933
14484	chr8	96809660	96811837	+	0	NA	Intergenic	MT2A|LTR|ERVL	-264775	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	4.300	0.594	0.806	1.403	2.905	1.298	1.747	1.348	2.697	2.403	0.659	0.671	3.895	4.966	2.808	3.222	4.456	3.200	0.676	0.945	1.070	1.039	0.710	0.526	2.824
5084	chr15	27711356	27716342	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-32307	NM_001242423	223433	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	7.146	8.755	3.294	6.147	2.814	1.320	8.165	5.915	5.846	6.279	2.092	1.484	9.244	7.978	5.649	7.640	5.476	7.509	1.639	1.359	0.832	2.139	0.779	0.641	8.103
13808	chr7	137688842	137690777	+	0	NA	Intergenic	Intergenic	252135	NR_033611	620016	Mm.388932	NR_033611	ENSMUSG00000100863	Gm12669	OTTMUSG00000007920	glutaredoxin 3 pseudogene	pseudo	6.893	10.233	3.542	8.923	6.445	4.905	6.551	10.911	6.835	10.328	4.842	2.804	9.632	8.243	9.758	9.930	5.998	9.869	6.976	2.640	6.215	8.406	4.059	6.892	12.107
3571	chr12	86628303	86630148	+	0	NA	Intergenic	MIRb|SINE|MIR	-49475	NM_177354	238328	Mm.216101	NM_177354	ENSMUSG00000021256	Vash1	AI834978|D930046M13Rik|G630009D10Rik	vasohibin 1	protein-coding	5.643	4.006	1.339	7.093	4.264	2.176	3.801	4.046	2.666	3.905	1.926	1.508	4.197	6.913	4.046	nan	3.539	4.427	2.419	1.409	1.351	2.827	1.509	1.404	7.228
10176	chr4	63069406	63072196	+	0	NA	intron (NM_028326, intron 2 of 14)	intron (NM_028326, intron 2 of 14)	83371	NM_007443	11699	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	3.431	7.825	2.311	4.547	1.754	0.750	1.685	1.906	1.850	2.500	1.517	0.988	1.277	3.173	3.309	3.448	1.511	3.338	3.818	1.419	0.900	5.957	nan	1.580	4.896
2510	chr11	78157050	78164432	+	0	NA	intron (NM_009423, intron 6 of 6)	intron (NM_009423, intron 6 of 6)	4809	NM_009423	22032	Mm.390418	NM_009423	ENSMUSG00000017386	Traf4	A530032M13Rik|CART1|msp2	TNF receptor associated factor 4	protein-coding	6.043	5.855	1.196	5.113	2.395	1.444	3.790	5.925	3.160	4.769	2.135	1.249	4.422	6.804	6.096	7.162	5.122	5.499	1.238	1.083	nan	1.644	0.904	0.998	8.759
9862	chr3	146109848	146114253	+	0	NA	Intergenic	Intergenic	-4014	NM_172864	242253	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik	WD repeat domain 63	protein-coding	5.720	2.818	1.029	6.232	4.411	2.441	7.033	6.113	6.752	7.405	5.973	1.695	8.907	11.772	8.619	8.144	4.428	8.785	1.713	1.015	0.523	2.291	0.716	0.722	8.262
2458	chr11	74864660	74868436	+	0	NA	intron (NM_197943, intron 9 of 22)	intron (NM_197943, intron 9 of 22)	1646	NR_105891	102465558		NR_105891	ENSMUSG00000098317	Mir6926	Gm27949|mmu-mir-6926	microRNA 6926	ncRNA	3.565	2.285	1.108	5.386	2.634	0.992	2.751	4.258	3.278	4.308	2.397	1.862	2.929	3.927	nan	4.579	3.182	3.295	2.135	2.242	nan	3.163	1.465	0.777	3.172
11392	chr5	89004539	89005767	+	0	NA	intron (NM_001197147, intron 3 of 25)	IAPEz-int|LTR|ERVK	117893	NM_018760	54403	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	2.199	5.833	4.053	2.176	3.078	1.664	4.061	5.015	2.234	2.580	1.389	1.186	4.985	4.027	4.196	4.359	3.715	2.780	1.688	2.300	2.417	1.082	1.148	1.496	2.728
10975	chr4	153958235	153963402	+	0	NA	exon (NM_001163019, exon 2 of 3)	exon (NM_001163019, exon 2 of 3)	3581	NM_001163019	97159	Mm.7066	NM_175287	ENSMUSG00000047613	A430005L14Rik	C79672	RIKEN cDNA A430005L14 gene	protein-coding	1.826	0.371	0.124	4.737	2.985	1.628	4.109	2.109	2.704	3.572	0.390	0.542	3.971	6.146	6.023	7.696	3.087	4.770	0.389	0.253	0.319	0.436	0.152	0.185	7.132
10183	chr4	68051924	68056436	+	0	NA	Intergenic	L1_Mus4|LINE|L1	900217	NM_019967	56710	Mm.248788	NM_019967	ENSMUSG00000028351	Brinp1	BRINP|Dbc1|Dbccr1|Fam5a	bone morphogenic protein/retinoic acid inducible neural specific 1	protein-coding	0.378	0.361	0.205	0.245	0.063	0.111	0.385	0.287	0.266	0.245	0.201	0.182	0.147	0.141	0.201	nan	0.327	0.519	7.080	3.807	1.797	nan	7.846	5.440	nan
834	chr1	166536284	166538212	+	0	NA	Intergenic	L1Md_F3|LINE|L1	-39660	NM_001164306	226601	Mm.475593	NM_001164306	ENSMUSG00000086056	Gm4846	EG226601|Fmo13	predicted gene 4846	protein-coding	4.193	0.757	0.137	2.850	2.207	0.615	3.447	0.734	3.850	5.245	2.189	1.178	6.451	5.471	3.752	7.875	5.428	3.723	0.830	0.465		nan	nan	0.145	3.658
12160	chr6	37363627	37366655	+	0	NA	intron (NM_178661, intron 2 of 11)	(TC)n|Simple_repeat|Simple_repeat	-65165	NM_001347104	320127	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	C130010K08Rik	diacylglycerol kinase, iota	protein-coding	4.189	0.856	0.565	2.692	4.290	2.354	6.623	3.203	4.009	5.028	1.942	1.200	7.718	8.061	4.657	7.837	7.956	4.715	nan	0.601	0.850	nan	nan	0.601	nan
7345	chr18	66630278	66633501	+	0	NA	Intergenic	RLTR13D5|LTR|ERVK	127711	NR_040528	100503565	Mm.98256	NR_040528		Gm9926	ENSMUSG00000053891	predicted gene 9926	ncRNA	1.542	3.179	1.851	1.945	2.660	2.346	3.215	5.655	2.060	1.529	1.895	3.029	1.402	1.972	2.104	1.346	2.358	1.450	0.503	1.399	0.665	0.341	0.870	0.859	0.957
13905	chr7	149603161	149606482	+	0	NA	Intergenic	Intergenic	4289986	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	3.126	nan	0.896	nan	1.697	0.633	3.423	4.105	nan	1.619	4.435	2.333	1.139	3.193	2.625	1.709	1.690	1.798	1.004	0.869	0.738	0.858	nan	0.455	3.203
15747	chrX	71329718	71331671	+	0	NA	Intergenic	L1MC1|LINE|L1	-34066	NM_001313702	53332	Mm.219672	NM_016985	ENSMUSG00000015214	Mtmr1	AW049210	myotubularin related protein 1	protein-coding	4.932	7.346	1.700	5.960	2.848	2.035	3.793	4.054	2.327	6.391	3.692	2.147	3.816	5.666	4.122	5.800	2.940	4.588	3.744	1.508	2.463	4.010	3.090	3.001	7.668
7760	chr19	40720827	40723349	+	0	NA	intron (NM_001304721, intron 3 of 9)	intron (NM_001304721, intron 3 of 9)	62318	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	5.038	1.606	1.229	4.689	2.526	1.978	1.288	1.884	3.301	4.110	2.493	1.163	1.573	2.461	2.229	4.003	3.427	4.701	0.649	1.096	0.468	0.549	0.485	0.453	3.637
13107	chr7	31580439	31582510	+	0	NA	Intergenic	L1_Mus1|LINE|L1	124280	NM_001198871	100043836	Mm.296883	NM_001198871	ENSMUSG00000094053	Scgb2b7	Abpbg7|Gm4684	secretoglobin, family 2B, member 7	protein-coding	0.516	0.899	0.661	0.579	0.422	0.563	0.600	1.264	0.597	0.669	4.849	2.308	0.692	0.562	0.719	0.872	0.863	0.755	1.283	0.659	0.341	0.812	0.625	0.733	0.956
9084	chr2	174498601	174500739	+	0	NA	Intergenic	B1F1|SINE|Alu	-26729	NM_025531	66390	Mm.182294	NM_025531	ENSMUSG00000016257	Slmo2	2310042G06Rik|AA407013|Prelid3b	slowmo homolog 2 (Drosophila)	protein-coding	3.191	2.753	1.294	2.072	2.345	1.226	3.854	3.945	3.356	6.607	1.087	1.188	6.094	7.008	4.062	nan	6.466	nan	2.618	4.181	2.676	4.002	4.521	4.072	nan
1216	chr10	39332054	39335138	+	0	NA	Intergenic	Intergenic	-36203	NM_001122892	14360	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	9.542	9.747	6.799	7.335	5.853	4.319	7.122	8.066	4.845	5.978	8.214	3.599	6.664	9.007	6.916	7.586	6.731	6.381	5.009	3.420	3.998	5.029	4.147	3.399	9.407
3879	chr13	23622059	23626999	+	0	NA	Intergenic	Intergenic	-1971	NM_015787	50709	Mm.170587	NM_015787	ENSMUSG00000051627	Hist1h1e	H1-4|H1.4|H1e|H1f4|H1s-4|H1var2	histone cluster 1, H1e	protein-coding	5.708	9.339	4.596	4.740	3.021	1.719	3.183	4.251	4.986	4.560	4.573	3.727	4.495	6.774	6.872	6.778	4.527	6.490	5.336	2.650	1.778	5.138	2.645	2.176	5.551
6616	chr17	37131000	37132582	+	0	NA	Intergenic	Intergenic	-19811	NM_146456	258448	Mm.377508	NM_146456	ENSMUSG00000096477	Olfr92	MOR256-29|bM573K1.4	olfactory receptor 92	protein-coding	4.069	0.927	1.821	1.489	1.803	0.797	2.141	1.733	1.436	1.799	0.626	0.819	3.171	3.591	1.714	2.839	3.490	2.533	0.536	0.785	0.493	0.272	0.807	0.587	2.205
10570	chr4	129373605	129374548	+	0	NA	intron (NM_028603, intron 1 of 4)	B2_Mm2|SINE|B2	3952	NM_028603	73680	Mm.32997	NM_028603	ENSMUSG00000028807	Zbtb8a	2410081M15Rik|AI480941	zinc finger and BTB domain containing 8a	protein-coding	7.400	9.584	3.304	7.796	4.867	2.433	6.731	5.293	2.254	6.758	4.755	1.636	4.114	9.497	6.779	7.797	4.963	5.429	6.859	6.702	5.805	9.927	8.038	4.346	12.344
2864	chr11	104496708	104500268	+	0	NA	Intergenic	Intergenic	52132	NM_001285990	217232	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	1.274	11.421	10.161	nan	0.825	0.581	0.801	0.590	nan	nan	1.052	0.825	0.438	nan	0.493	0.895	0.744	nan	0.591	1.561	1.283	nan	0.621	0.754	0.532
7458	chr19	3672684	3675809	+	0	NA	intron (NM_008513, intron 1 of 22)	intron (NM_008513, intron 1 of 22)	12318	NM_008513	16973	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	5.000	0.846	1.147	4.145	2.885	3.327	7.294	8.779	nan	3.771	2.366	1.094	3.857	4.926	6.217	6.218	6.624	5.107	2.866	2.670	4.770	4.663	4.960	6.538	7.482
9023	chr2	167453115	167460404	+	0	NA	intron (NR_130767, intron 6 of 13)	intron (NR_130767, intron 6 of 13)	35049	NM_001304542	77031	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	7.209	9.312	3.855	5.702	4.044	2.638	6.037	8.357	3.873	6.195	4.542	2.230	5.638	7.035	6.167	8.499	5.874	6.615	5.422	2.890	2.963	6.410	4.319	4.306	9.483
10916	chr4	149915807	149922973	+	0	NA	intron (NM_029035, intron 1 of 2)	MIRb|SINE|MIR	35616	NM_029035	74646	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	5.513	5.061	2.952	4.053	6.358	5.192	4.602	4.170	5.133	5.181	3.339	2.534	5.694	7.086	4.200	4.938	3.739	4.987	4.420	2.613	2.459	4.382	3.421	3.395	4.420
1667	chr10	96198054	96201117	+	0	NA	Intergenic	IAPLTR1a_Mm|LTR|ERVK	-26622	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	5.511	0.804	1.104	2.387	2.531	1.369	3.976	4.600	4.215	3.718	nan	1.660	4.804	5.040	5.276	5.377	6.308	4.490	nan	0.897	0.560	nan	0.973	0.799	4.817
15576	chr9	118847851	118849359	+	0	NA	intron (NM_001113514, intron 8 of 13)	Tigger1|DNA|TcMar-Tigger	-77931	NM_133710	69274	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	2.669	0.442	0.258	2.315	2.947	3.693	2.735	3.916	2.855	3.243	1.131	0.896	2.923	3.105	2.699	4.102	3.194	3.593	1.641	1.461	1.998	1.831	nan	1.467	3.318
8671	chr2	131020884	131033363	+	0	NA	3' UTR (NM_009730, exon 29 of 29)	3' UTR (NM_009730, exon 29 of 29)	13275	NR_105969	102465606		NR_105969	ENSMUSG00000098686	Mir6973b	Gm27815|mmu-mir-6973b	microRNA 6973b	ncRNA	6.762	1.555	0.809	4.984	4.476	3.168	5.547	8.467	5.561	6.028	4.140	2.228	8.406	9.406	6.704	9.096	7.370	6.504	nan	1.511	1.385	1.926	1.569	1.312	8.802
10131	chr4	59397553	59402285	+	0	NA	intron (NM_001163288, intron 5 of 16)	intron (NM_001163288, intron 5 of 16)	38714	NM_001163288	634731	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528|OTTMUSG00000007332	sushi domain containing 1	protein-coding	5.109	nan	0.584	3.479	2.352	0.824	nan	4.437	4.119	4.393	1.323	0.925	4.766	6.074	5.071	6.937	4.269	7.058	nan	0.548	0.436	1.336	0.870	0.482	8.894
5085	chr15	27730498	27737409	+	0	NA	intron (NM_001081302, intron 55 of 56)	intron (NM_001081302, intron 55 of 56)	-52411	NM_001242423	223433	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	2.797	2.258	0.884	2.973	1.071	0.458	3.677	1.156	2.476	2.457	0.571	0.516	5.510	3.771	2.869	4.631	2.062	4.270	1.608	0.681	0.411	2.828	0.800	0.531	4.642
569	chr1	129650937	129654988	+	0	NA	intron (NM_172485, intron 5 of 27)	intron (NM_172485, intron 5 of 27)	379658	NM_172485	210417	Mm.380518	NM_172485	ENSMUSG00000042581	Thsd7b	1700074E13Rik|B930082A18|D130067I03Rik	thrombospondin, type I, domain containing 7B	protein-coding	13.304	nan	0.536	1.708	2.914	1.309	7.308	5.822	3.708	4.550	1.226	1.525	6.063	3.751	6.207	12.048	10.446	7.402	nan	1.253	0.954	1.032	2.183	1.724	8.727
11912	chr5	143024217	143027011	+	0	NA	intron (NM_080561, intron 14 of 16)	MTEb|LTR|ERVL-MaLR	65259	NM_007984	14086	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	4.195	0.793	0.598	5.737	4.201	3.151	2.138	1.097	4.162	6.340	0.643	0.928	2.809	5.721	5.013	5.775	3.882	6.855	1.216	0.701	1.307	0.948	0.726	0.866	nan
14566	chr8	109084655	109089924	+	0	NA	intron (NR_126329, intron 2 of 9)	intron (NR_126329, intron 2 of 9)	12067	NR_126329	628686	Mm.203332	NR_126329	ENSMUSG00000097393	D030068K23Rik	-	RIKEN cDNA D030068K23 gene	ncRNA	4.654	2.059	0.883	3.885	6.786	5.632	4.194	5.903	4.459	4.004	5.313	3.974	5.370	6.060	5.528	6.161	4.757	5.165	2.960	2.231	2.977	nan	2.964	3.308	5.977
3111	chr11	120344967	120347336	+	0	NA	3' UTR (NM_009609, exon 6 of 6)	3' UTR (NM_009609, exon 6 of 6)	1262	NR_105900	102465564		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	4.148	7.942	2.110	5.115	2.027	0.912	4.763	4.215	2.908	5.217	3.993	2.554	4.503	4.296	6.488	7.182	3.627	5.417	3.461	nan	1.614	4.739	1.276	1.581	8.196
4269	chr13	83672791	83676615	+	0	NA	Intergenic	Intergenic	-53403	NR_015561	320203	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik	RIKEN cDNA C130071C03 gene	ncRNA	0.575	6.356	3.912	0.918	0.274	0.289	0.304	0.320	0.643	0.409	0.445	0.195	0.226	0.377	0.443	0.523	0.481	0.854	0.753	0.406	0.285	0.723	0.137	0.100	0.306
6727	chr17	50250116	50251403	+	0	NA	Intergenic	IAPEy-int|LTR|ERVK	11551	NR_131975	446210	Mm.378184	NM_001004437	ENSMUSG00000067103	AY702103	STDP2	cDNA sequence AY702103	ncRNA	4.681	2.853	1.296	3.898	2.158	1.233	1.369	1.999	3.454	4.149	1.488	1.004	2.171	2.778	1.347	2.046	nan	2.480	1.375	1.294	1.187	1.327	0.580	0.284	2.192
14062	chr8	18710295	18714939	+	0	NA	intron (NM_007426, intron 2 of 8)	intron (NM_007426, intron 2 of 8)	28945	NM_007426	11601	Mm.439874	NM_007426	ENSMUSG00000031465	Angpt2	Agpt2|Ang-2|Ang2	angiopoietin 2	protein-coding	1.949	1.244	0.621	1.464	0.812	0.381	0.893	1.449	1.425	0.938	0.729	0.540	1.345	0.729	1.402	1.564	1.366	1.942	2.555	2.190	1.627	8.644	1.500	0.777	1.345
5188	chr15	57677792	57688517	+	0	NA	Intergenic	Intergenic	-11513	NM_199449	387609	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	2.270	0.972	0.440	nan	1.502	0.872	nan	nan	nan	nan	0.759	0.631	3.164	3.432	2.401	nan	2.032	2.201	3.062	2.804	1.581	6.568	2.199	1.556	1.947
11749	chr5	129525027	129527772	+	0	NA	intron (NM_172276, intron 7 of 17)	B4|SINE|B4	25168	NM_172276	231769	Mm.288714	NM_172276	ENSMUSG00000029439	Sfswap	1190005N23Rik|6330437E22Rik|AI197402|AW212079|SWAP|Sfrs8|Srsf8	splicing factor, suppressor of white-apricot homolog (Drosophila)	protein-coding	6.168	12.422	3.279	6.800	3.827	2.733	7.185	5.065	3.287	nan	5.670	2.907	4.029	5.673	7.336	7.987	nan	6.389	nan	3.436	3.126	7.146	nan	6.175	10.401
4335	chr13	101301411	101306672	+	0	NA	Intergenic	Intergenic	49722	NR_045846	71174	Mm.399537	NR_045846	ENSMUSG00000100733	4933416M06Rik	-	RIKEN cDNA 4933416M06 gene	ncRNA	4.080	0.478	0.551	2.353	3.547	2.341	4.931	5.384	3.405	2.276	3.189	2.457	4.130	3.936	4.303	4.065	nan	4.620	1.758	1.717	1.395	1.617	3.301	2.662	3.247
5251	chr15	61995926	62005184	+	0	NA	Intergenic	Intergenic	15214	NM_001177352	17869	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	2.670	11.253	4.530	nan	1.797	0.593	nan	2.753	nan	nan	0.819	0.740	2.118	2.355	2.597	2.639	2.280	2.343	1.141	1.013	0.732	1.094	0.742	0.504	1.783
5048	chr15	10709156	10710981	+	0	NA	intron (NM_001166408, intron 1 of 17)	intron (NM_001166408, intron 1 of 17)	3472	NM_030690	75646	Mm.212395	NM_030690	ENSMUSG00000022246	Rai14	1700008J19Rik|1700020L11Rik|Ankycorbin|Norpeg|mKIAA1334	retinoic acid induced 14	protein-coding	3.122	0.696	0.316	3.796	1.985	1.147	3.836	4.211	3.512	3.669	3.568	3.838	6.377	4.148	3.809	3.020	1.581	4.499	0.494	0.378	0.179	0.335	0.218	0.103	1.516
13612	chr7	119368401	119372802	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	88671	NM_025989	67133	Mm.46403	NM_025989	ENSMUSG00000030954	Gp2	2310037I18Rik|AV060639	glycoprotein 2 (zymogen granule membrane)	protein-coding	5.534	1.200	0.488	10.055	3.679	2.364	7.332	8.119	5.221	7.903	2.475	2.431	7.720	nan	9.682	8.742	5.237	9.591	4.304	1.232	1.170	3.042	3.557	2.731	12.167
12744	chr6	128719400	128721625	+	0	NA	intron (NM_001099918, intron 1 of 5)	intron (NM_001099918, intron 1 of 5)	2534	NM_001099918	100043861	Mm.66911	NM_001099918	ENSMUSG00000079299	Klrb1	4930431A04Rik|Gm4696|Klrb1g|Klrb6|Ly-55|Ly55|NKR-P1G|Nkrp-1e|Nkrp1g	killer cell lectin-like receptor subfamily B member 1	protein-coding	0.670	9.702	8.776	0.653	0.707	0.723	0.993	nan	0.864	0.422	0.338	0.489	0.388	0.380	0.437	nan	1.002	0.732	2.487	3.903	2.967	2.538	4.867	4.279	0.600
6444	chr17	27162721	27165404	+	0	NA	intron (NM_173027, intron 1 of 5)	intron (NM_173027, intron 1 of 5)	3702	NM_173027	271424	Mm.209679	NM_173027	ENSMUSG00000024210	Ip6k3	D830007E07Rik|Ihpk3	inositol hexaphosphate kinase 3	protein-coding	7.074	16.109	8.332	7.118	2.684	1.778	6.007	5.344	4.205	4.568	3.764	3.927	4.521	5.144	7.243	7.908	4.230	5.816	4.463	2.213	1.924	4.956	2.550	2.028	10.683
10511	chr4	124821326	124824053	+	0	NA	intron (NM_008636, intron 4 of 10)	intron (NM_008636, intron 4 of 10)	20140	NM_008636	17764	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding	4.702	2.429	1.132	2.970	1.813	0.949	0.896	1.813	1.786	2.766	2.006	0.943	1.096	2.493	nan	2.109	1.139	2.039	1.087	1.300	0.751	1.147	0.461	0.488	4.196
10402	chr4	116024453	116025601	+	0	NA	Intergenic	ORR1A2|LTR|ERVL-MaLR	-7125	NM_010173	14073	Mm.256025	NM_010173	ENSMUSG00000034171	Faah	AW412498	fatty acid amide hydrolase	protein-coding	5.235	0.577	0.488	1.851	1.593	1.018	2.677	4.365	3.144	2.504	1.871	0.722	4.622	4.552	5.101	5.884	3.175	3.855	1.370	1.489	0.379	0.827	1.666	0.955	4.163
4353	chr13	102944289	102946304	+	0	NA	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	185041	NR_130171	76624	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	3.135	0.458	0.472	0.981	0.629	0.317	2.444	4.769	1.264	1.459	7.702	1.448	3.759	2.960	2.638	3.238	2.491	nan	0.971	0.657	0.525	1.571	1.159	0.556	2.286
8895	chr2	157594109	157597148	+	0	NA	Intergenic	PB1D9|SINE|Alu	-29267	NM_016916	53619	Mm.480461	NM_016916	ENSMUSG00000067787	Blcap	AI462828|Bc10	bladder cancer associated protein	protein-coding	3.486	0.908	0.817	2.502	2.074	1.055	2.275	5.382	2.873	3.546	1.087	1.295	3.579	3.735	2.291	5.417	3.648	4.021	nan	0.963	0.876	1.095	1.079	0.978	3.428
14462	chr8	93593206	93595263	+	0	NA	Intergenic	Intergenic	-58527	NM_001003951	67935	Mm.65457	NM_001003951	ENSMUSG00000058019	Ces5a	1700081L16Rik|1700122C07Rik|BB081581|Ces7|Gm503|cauxin	carboxylesterase 5A	protein-coding	5.255	8.206	2.599	5.889	2.839	1.690	3.212	6.020	3.837	4.432	2.635	1.447	5.457	5.723	5.432	6.739	3.872	5.224	2.965	2.059	2.050	4.530	1.626	1.449	6.032
2939	chr11	109291609	109295222	+	0	NA	intron (NM_001165934, intron 1 of 16)	intron (NM_001165934, intron 1 of 16)	4766	NM_001165934	19739	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	1.261	8.341	8.028	nan	1.918	0.988	0.868	0.755	nan	nan	0.573	0.343	0.348	nan	1.054	0.784	1.081	nan	1.395	2.000	1.662	nan	1.010	1.055	0.652
1877	chr10	128365041	128376661	+	0	NA	promoter-TSS (NM_001081040)	promoter-TSS (NM_001081040)	-814	NM_001081040	210582	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	5.901	nan	0.420	2.985	3.413	2.205	4.682	5.279	2.949	4.145	0.962	1.010	5.357	6.917	4.871	5.729	6.375	3.612	0.787	0.967	0.870	0.798	nan	0.500	6.335
9918	chr4	8849576	8857026	+	0	NA	intron (NM_001277149, intron 27 of 37)	intron (NM_001277149, intron 27 of 37)	162895	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.787	10.989	5.465	1.244	0.592	0.318	0.307	nan	0.792	0.794	0.792	0.538	0.334	0.411	0.916	0.762	0.683	0.831	6.100	nan	3.675	11.511	5.487	4.232	0.731
246	chr1	64143273	64144944	+	0	NA	Intergenic	Intergenic	-22719	NM_033563	93691	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	5.969	1.293	0.641	5.464	1.764	1.032	3.350	3.791	3.138	2.730	1.734	1.795	3.834	4.367	2.574	5.001	2.039	4.808	1.695	1.807	1.100	1.593	1.735	1.361	3.573
7695	chr19	29998457	30007560	+	0	NA	promoter-TSS (NM_025741)	promoter-TSS (NM_025741)	-782	NM_025741	66745	Mm.158128	NM_025741	ENSMUSG00000024815	Trpd52l3	4931412G03Rik	tumor protein D52-like 3	protein-coding	5.681	1.377	1.000	nan	4.372	2.905	3.970	3.293	7.105	6.795	nan	1.698	4.984	6.223	4.564	7.729	9.683	7.463	nan	0.795	0.593	0.674	nan	0.496	6.120
7937	chr2	4712789	4715290	+	0	NA	Intergenic	Intergenic	-3792	NM_001190400	209645	Mm.149539	NM_178663	ENSMUSG00000048186	Bend7	1110017O21Rik|E130319B15Rik	BEN domain containing 7	protein-coding	2.617	0.589	0.342	2.197	4.583	1.971	3.797	2.119	4.147	4.370	1.376	0.515	3.118	4.096	4.732	5.204	2.119	5.851	0.714	0.641	0.312	0.741	0.349	0.161	6.907
10225	chr4	82407285	82417145	+	0	NA	intron (NM_001113210, intron 2 of 11)	intron (NM_001113210, intron 2 of 11)	93564	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.719	0.703	0.561	0.269	0.193	0.115	0.378	0.307	0.424	0.523	0.381	0.215	0.199	0.350	0.392	0.691	0.613	0.740	6.433	10.193	5.409	15.030	4.486	3.056	0.718
5610	chr15	97593272	97599446	+	0	NA	Intergenic	RMER2|LTR|ERV1	109463	NM_028003	71919	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	5.200	10.137	3.555	8.656	3.169	1.916	5.856	7.500	3.078	4.398	2.427	1.216	5.425	5.459	4.316	nan	2.667	6.095	3.319	2.882	2.012	3.763	3.124	2.478	5.705
15699	chrX	33444700	33446705	+	0	NA	Intergenic	Intergenic	131612	NM_001145038	100040732	Mm.465135	NM_001145038	ENSMUSG00000078324	Btbd35f14	Gm2933	BTB domain containing 35, family member 14	protein-coding	0.753	3.912	4.999	0.550	0.418	0.195	0.367	0.336	0.467	0.400	0.582	0.658	0.224	0.372	0.276	0.499	0.386	0.472	0.839	1.806	0.641	0.356	0.614	0.567	0.378
4001	chr13	38610286	38611522	+	0	NA	intron (NM_139063, intron 4 of 4)	intron (NM_139063, intron 4 of 4)	24205	NM_139063	17828	Mm.261554	NM_139063	ENSMUSG00000038982	Bloc1s5	1810074A19Rik|Muted|mu	biogenesis of lysosomal organelles complex-1, subunit 5, muted	protein-coding	1.556	nan	0.315	1.865	0.613	0.610	1.608	1.895	nan	nan	0.671	0.497	1.338	3.028	1.620	1.165	1.364	1.494	0.632	0.632	0.744	0.307	0.433	0.510	1.875
2227	chr11	55126672	55128319	+	0	NA	intron (NM_172258, intron 9 of 10)	B4A|SINE|B4	24211	NM_172258	215332	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	4.136	0.756	0.269	2.838	0.986	0.670	4.138	3.988	1.795	2.283	6.147	2.232	4.327	5.513	5.983	7.308	4.472	4.050	nan	0.575	0.372	0.788	0.560	0.239	8.639
3241	chr12	25892407	25895800	+	0	NA	Intergenic	Intergenic	316402	NR_131149	629481	Mm.390460	NR_131149		Gm29687	-	predicted gene, 29687	ncRNA	8.571	9.611	3.864	5.038	2.710	1.452	5.292	4.539	5.172	5.012	5.460	3.990	4.778	5.839	8.460	7.868	5.430	6.455	1.456	1.363	0.864	2.607	1.089	0.688	10.307
1168	chr10	21626356	21629072	+	0	NA	Intergenic	Intergenic	34569	NR_027968	67692	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	2.428	4.853	2.099	2.713	1.311	0.972	0.618	0.567	nan	1.644	5.409	3.946	0.555	1.077	1.420	1.362	1.096	2.334	0.974	1.073	1.511	0.447	0.523	0.724	nan
13363	chr7	87217086	87224760	+	0	NA	Intergenic	Intergenic	-25726	NM_001285835	50490	Mm.31748	NM_015760	ENSMUSG00000030562	Nox4	AI648021	NADPH oxidase 4	protein-coding	7.152	7.250	3.191	6.259	4.611	2.958	6.116	6.441	4.975	5.656	4.347	2.135	7.345	8.259	6.621	7.161	5.766	7.000	2.950	1.605	1.821	nan	2.051	1.723	9.682
11957	chr5	147835436	147837082	+	0	NA	Intergenic	Intergenic	-24369	NM_025624	66537	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	2.538	0.745	0.640	nan	1.046	0.344	2.081	2.351	nan	2.176	0.324	0.214	3.855	3.668	6.815	5.715	3.497	3.453	0.556	0.381	0.341	0.523	0.497	0.310	4.127
11450	chr5	93339280	93342100	+	0	NA	Intergenic	ID_B1|SINE|B4	73117	NM_007635	12452	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	1.509	0.356	0.417	1.993	2.534	1.430	2.405	1.714	2.515	2.601	0.869	0.736	3.222	4.821	3.902	3.354	2.545	3.003	1.045	0.866	0.779	0.630	0.866	1.075	2.741
11455	chr5	93533331	93535141	+	0	NA	Intergenic	MT-int|LTR|ERVL-MaLR	137227	NM_001164284	381654	Mm.326591	NM_001164284	ENSMUSG00000070686	C87414	-	expressed sequence C87414	protein-coding	3.273	1.466	1.183	1.003	2.738	0.803	2.680	2.202	2.261	1.821	3.124	1.704	1.766	3.222	2.880	1.783	3.130	1.750	1.035	1.220	0.913	0.917	1.735	1.148	1.379
7769	chr19	41457001	41460047	+	0	NA	Intergenic	B1_Mm|SINE|Alu	-66728	NM_001326287	627352	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	4.303	13.885	4.910	3.812	2.067	0.904	2.185	3.221	2.059	3.107	1.886	0.769	1.163	2.838	3.173	3.821	1.775	4.701	1.863	2.205	0.684	1.629	2.952	1.935	5.254
536	chr1	127310807	127313278	+	0	NA	intron (NM_145128, intron 3 of 17)	intron (NM_145128, intron 3 of 17)	107056	NM_145128	107895	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	8.257	nan	1.036	2.424	5.103	2.547	4.876	4.976	3.020	3.452	3.324	1.437	6.106	6.683	4.462	6.851	5.855	4.803	nan	1.160	0.491	0.388	1.036	0.429	3.118
11514	chr5	104475251	104477691	+	0	NA	intron (NM_008861, intron 2 of 14)	RLTR10|LTR|ERVK	17014	NM_008861	18764	Mm.6442	NM_008861	ENSMUSG00000034462	Pkd2	C030034P18Rik|PC2|TRPP2	polycystic kidney disease 2	protein-coding	7.828	8.540	2.500	10.367	3.317	1.166	5.519	6.898	6.258	9.941	5.063	3.898	8.291	9.370	10.156	9.645	4.311	9.524	4.221	1.177	1.197	4.712	1.981	1.537	11.491
8319	chr2	68681951	68684354	+	0	NA	intron (NM_183113, intron 7 of 28)	intron (NM_183113, intron 7 of 28)	25268	NM_183113	75721	Mm.65456	NM_183113	ENSMUSG00000079324	4932414N04Rik	-	RIKEN cDNA 4932414N04 gene	protein-coding	5.895	0.771	0.807	1.145	0.791	0.407	4.562	7.325	2.169	1.586	1.390	0.318	5.742	5.893	4.727	6.096	4.444	4.350	0.874	0.504	0.237	0.844	0.368	0.360	4.624
7917	chr19	61047295	61049955	+	0	NA	intron (NM_018869, intron 4 of 15)	intron (NM_018869, intron 4 of 15)	92215	NR_131956	414758	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	5.138	nan	0.436	4.873	6.584	4.589	1.957	4.092	4.458	6.132	2.112	1.396	1.844	7.960	nan	2.259	2.957	5.279	0.451	0.900	0.626	0.455	0.921	1.134	2.397
1767	chr10	116734802	116741932	+	0	NA	intron (NR_131036, intron 2 of 2)	intron (NR_131036, intron 2 of 2)	9114	NR_131036	75878	Mm.370607	NR_131036		4930579P08Rik	-	RIKEN cDNA 4930579P08 gene	ncRNA	6.469	1.232	0.600	4.528	2.008	1.016	2.859	4.603	5.089	5.526	1.674	0.816	5.615	6.353	6.058	7.740	6.637	6.049	0.824	0.808	0.497	0.608	0.431	0.290	4.439
13608	chr7	119153477	119158161	+	0	NA	intron (NM_001024138, intron 1 of 1)	intron (NM_001024138, intron 1 of 1)	28555	NM_001024138	209776	Mm.300632	NM_001024138	ENSMUSG00000066197	Gpr139	GPRg1|Gm495|PGR3	G protein-coupled receptor 139	protein-coding	6.823	0.916	0.530	4.626	4.658	3.910	7.459	7.004	5.632	6.819	2.780	2.298	10.866	8.631	6.870	5.853	7.125	6.391	1.338	1.072	0.824	1.637	0.722	0.634	5.173
7497	chr19	5791044	5853985	+	0	NA	Intergenic	Intergenic	-19842	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	9.137	5.461	2.422	9.600	10.450	6.519	8.299	10.589	nan	8.588	7.136	4.650	6.569	11.431	7.573	nan	7.666	9.656	2.777	3.238	2.683	4.707	3.859	3.031	10.190
2237	chr11	57614307	57616074	+	0	NA	Intergenic	RSINE1|SINE|B4	-30252	NM_134189	171212	Mm.271670	NM_134189	ENSMUSG00000020520	Galnt10	AU018154|C330012K04Rik|GalNAc-T10|GalNAc-T9|Galnt9|ppGaNTase	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10	protein-coding	6.222	10.973	3.367	8.689	2.971	2.135	5.243	5.985	3.135	10.464	3.198	3.221	3.576	6.435	6.576	7.309	3.729	7.434	3.783	2.386	2.172	4.640	3.944	4.348	11.667
5186	chr15	57591793	57594923	+	0	NA	Intergenic	Intergenic	-101309	NM_199449	387609	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	4.475	1.690	0.761	nan	3.481	1.594	6.665	8.556	nan	3.852	5.761	2.605	5.633	6.834	4.705	nan	4.551	4.791	3.546	4.099	2.190	6.068	2.893	2.319	5.664
5378	chr15	77110375	77112502	+	0	NA	intron (NM_053104, intron 5 of 13)	intron (NM_053104, intron 5 of 13)	27040	NR_108037	74303	Mm.444304	NR_108037	ENSMUSG00000097267	1700109K24Rik	4933425G21Rik	RIKEN cDNA 1700109K24 gene	ncRNA	3.100	nan	0.442	2.816	2.249	1.261	2.656	4.407	2.933	3.116	nan	0.991	4.555	5.185	2.048	2.981	2.610	4.334	1.236	1.052	0.717	nan	1.655	1.031	1.570
7125	chr18	35204797	35207474	+	0	NA	intron (NM_009818, intron 7 of 17)	PB1D11|SINE|Alu	8889	NM_178005	107065	Mm.39900	NM_178005	ENSMUSG00000071862	Lrrtm2	AI851755|BB129880|C630011A14Rik|mKIAA0416	leucine rich repeat transmembrane neuronal 2	protein-coding	4.200	0.702	0.549	3.194	2.782	1.059	4.169	3.899	3.354	3.529	1.328	1.061	6.461	6.633	4.208	6.064	2.460	4.619	0.542	0.731	0.250	0.672	0.489	0.181	7.285
11555	chr5	110991312	110995818	+	0	NA	intron (NM_001267622, intron 2 of 22)	intron (NM_001267622, intron 2 of 22)	-10579	NR_030482	735278		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	0.588	0.636	0.289	1.020	0.440	0.348	nan	0.610	0.860	0.668	0.309	0.241	0.684	1.090	1.453	1.307	0.338	1.068	3.468	1.641	1.130	4.915	2.327	1.697	1.883
8767	chr2	147187269	147194395	+	0	NA	intron (NR_030769, intron 1 of 5)	intron (NR_030769, intron 1 of 5)	3408	NR_108091	78068	Mm.261511	NR_108091	ENSMUSG00000053545	6430503K07Rik	-	RIKEN cDNA 6430503K07 gene	ncRNA	0.142	0.365	0.311	0.221	0.065	0.069	0.213	0.221	0.133	0.163	0.117	0.024	0.085	0.106	0.231	0.422	0.278	0.180	nan	0.121	0.203	5.564	0.531	0.693	0.545
15713	chrX	39410615	39411579	+	0	NA	Intergenic	Intergenic	64831	NM_001177380	78631	Mm.243738	NM_001177380	ENSMUSG00000079619	Cypt15	1700085A12Rik	cysteine-rich perinuclear theca 15	protein-coding	2.390	0.579	0.470	2.533	3.026	2.900	1.368	3.315	2.863	2.617	1.422	1.396	1.734	2.790	1.834	2.994	1.415	2.556	0.737	0.518	0.751	0.327	0.479	0.459	1.759
13052	chr7	28623189	28624417	+	0	NA	intron (NM_175319, intron 2 of 12)	intron (NM_175319, intron 2 of 12)	7212	NM_175319	101744	Mm.26022	NM_175319	ENSMUSG00000037469	Acp7	AU017076|C330005M16Rik|Papl	acid phosphatase 7, tartrate resistant	protein-coding	5.334	5.411	2.965	5.069	2.640	1.995	5.282	7.332	4.505	4.923	4.190	2.310	5.640	6.629	5.867	6.055	5.467	6.268	4.122	1.841	2.006	3.855	3.049	1.924	6.744
9525	chr3	95031144	95037969	+	0	NA	intron (NM_001282017, intron 6 of 9)	intron (NM_001282017, intron 6 of 9)	8058	NM_001282017	19185	Mm.2261	NM_008951	ENSMUSG00000005625	Psmd4	Af1|Mcb1|angiocidin	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	protein-coding	11.463	16.206	6.002	10.137	7.629	3.929	14.802	11.682	6.854	11.165	10.432	4.665	12.484	15.032	11.413	11.701	9.026	10.599	3.738	3.520	3.015	4.091	3.675	2.754	15.290
14999	chr9	43577640	43586985	+	0	NA	Intergenic	B4|SINE|B4	-162264	NM_021424	58235	Mm.335096	NM_021424	ENSMUSG00000032012	Nectin1	AI835281|AW549174|Cd111|HIgR|HveC|PRR|PRR1|Pvrl1|nectin-1	nectin cell adhesion molecule 1	protein-coding	1.750	1.488	0.633	1.424	0.610	0.260	0.613	1.403	1.128	1.178	8.437	3.120	0.993	1.289	nan	nan	0.788	2.017	1.505	1.127	0.709	nan	0.343	0.345	3.110
12812	chr6	137505711	137510160	+	0	NA	intron (NM_001271589, intron 7 of 13)	B4A|SINE|B4	11960	NM_001271589	13860	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	6.874	1.676	0.692	3.697	2.239	1.347	3.451	5.209	6.989	6.426	5.261	5.298	8.042	4.363	nan	7.709	4.522	5.970	nan	1.534	1.151	2.277	1.581	0.983	3.673
11026	chr5	17315787	17317509	+	0	NA	Intergenic	MERVL-int|LTR|ERVL	-159474	NM_027609	70935	Mm.332225	NM_027609	ENSMUSG00000058643	Speer4f1	4922502J04Rik|SPEER-4F|Speer4f	spermatogenesis associated glutamate (E)-rich protein 4F1	protein-coding	1.843	0.354	0.073	2.750	3.314	1.386	1.609	2.615	2.722	2.664	1.402	0.562	1.733	3.304	2.704	1.765	1.638	3.378	0.721	0.543	0.305	0.564	0.464	0.311	0.397
6855	chr17	74683551	74685754	+	0	NA	intron (NM_007566, intron 65 of 72)	intron (NM_007566, intron 65 of 72)	-33098	NM_152817	74196	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	3.141	1.340	0.870	3.371	3.201	2.178	2.584	3.721	3.435	3.421	5.009	3.656	3.876	4.739	4.405	3.935	5.221	4.817	1.222	0.728	0.786	2.098	0.975	0.828	2.579
8558	chr2	118428374	118430390	+	0	NA	intron (NM_001177806, intron 10 of 37)	intron (NM_001177806, intron 10 of 37)	40270	NM_001177806	27103	Mm.217616	NM_013719	ENSMUSG00000005102	Eif2ak4	2610011M03|GCN2|MGCN2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding	4.841	2.029	1.304	1.670	1.974	1.140	1.252	1.842	2.553	2.458	0.945	0.509	nan	3.539	1.828	nan	2.819	2.442	4.237	3.855	2.562	1.688	3.650	2.587	nan
11588	chr5	114439237	114443814	+	0	NA	intron (NM_001347398, intron 2 of 6)	(TATG)n|Simple_repeat|Simple_repeat	2502	NM_029956	77697	Mm.105182	NM_029956	ENSMUSG00000029575	Mmab	9130222L19Rik|ATR	methylmalonic aciduria (cobalamin deficiency) cblB type homolog (human)	protein-coding	5.083	5.603	2.279	5.655	3.536	1.194	5.994	5.007	3.387	5.720	2.586	1.879	3.976	6.679	5.519	6.206	4.060	5.395	nan	nan	1.660	1.897	nan	1.180	6.797
11714	chr5	124659631	124663486	+	0	NA	intron (NM_011596, intron 9 of 19)	intron (NM_011596, intron 9 of 19)	32506	NM_011596	21871	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	2.971	2.528	0.659	5.993	1.535	0.764	0.997	1.148	2.525	nan	0.749	0.503	1.062	1.497	nan	2.568	nan	nan	nan	1.654	1.814	5.071	nan	1.362	nan
444	chr1	92864974	92867389	+	0	NA	Intergenic	Intergenic	15803	NR_029559	387167		NR_029559	ENSMUSG00000065470	Mir149	Mirn149|mir-149|mmu-mir-149	microRNA 149	ncRNA	4.333	0.508	0.480	2.225	1.817	1.137	3.848	5.370	3.014	3.486	1.974	1.116	6.717	5.298	4.594	9.795	4.508	4.890	2.517	1.501	0.931	nan	2.624	2.383	5.363
7677	chr19	28404503	28406538	+	0	NA	intron (NM_001305671, intron 3 of 9)	intron (NM_001305671, intron 3 of 9)	-272704	NR_045330	320176	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	nan	0.531	0.641	nan	0.795	0.480	0.539	1.375	1.406	1.016	5.105	2.479	0.422	0.585	0.527	0.609	0.888	0.501	nan	0.970	0.249	1.096	nan	0.995	0.658
508	chr1	120299238	120300693	+	0	NA	Intergenic	Intergenic	-28883	NM_001085409	68428	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	5.833	1.610	1.020	2.817	5.739	4.355	5.237	3.581	3.253	3.645	1.464	0.834	6.503	6.910	4.076	5.388	3.534	4.740	1.719	1.311	1.263	1.289	2.215	1.501	4.500
15568	chr9	118594183	118597420	+	0	NA	Intergenic	Intergenic	-10908	NM_133721	104099	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	1.740	1.137	0.644	1.228	1.659	0.531	2.630	1.608	1.793	1.811	0.510	0.305	1.492	2.618	2.715	2.879	1.641	4.164	1.639	1.181	0.833	1.597	nan	1.458	6.405
8318	chr2	68300636	68311974	+	0	NA	intron (NM_016866, intron 14 of 17)	intron (NM_016866, intron 14 of 17)	165676	NM_016866	53416	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	6.266	1.883	0.732	3.793	1.638	1.032	9.218	9.095	4.985	8.567	3.996	0.889	7.665	7.543	8.582	10.060	8.249	7.160	0.880	1.004	0.941	2.312	0.922	1.007	11.550
14992	chr9	42901714	42903112	+	0	NA	intron (NM_175481, intron 1 of 20)	intron (NM_175481, intron 1 of 20)	41958	NM_175481	110637	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	1.573	1.243	0.969	1.551	1.831	1.409	1.254	1.555	1.633	2.150	1.456	0.790	1.621	2.730	1.803	2.204	1.332	1.719	nan	1.130	1.045	0.985	1.017	0.906	2.198
4025	chr13	41560939	41565626	+	0	NA	Intergenic	Lx8|LINE|L1	-42934	NM_001163572	621976	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	5.335	nan	1.305	6.640	3.483	1.721	nan	3.541	5.300	5.144	2.685	1.599	3.018	5.098	3.467	3.856	2.196	nan	0.946	0.906	0.869	1.011	0.537	0.471	nan
11740	chr5	125883902	125887601	+	0	NA	Intergenic	Intergenic	353333	NM_001190352	208151	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding	7.778	8.599	3.761	7.562	4.875	2.107	7.057	6.975	5.735	6.082	5.709	3.078	5.553	8.694	nan	8.127	5.494	7.045	nan	2.958	2.039	6.108	nan	1.957	7.956
1089	chr10	8648496	8649763	+	0	NA	Intergenic	MIR|SINE|MIR	-130304	NM_177387	338362	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	5.037	0.520	0.586	2.216	2.656	1.436	3.010	2.495	1.847	3.441	1.924	0.669	2.974	3.647	3.514	3.706	2.938	4.247	2.246	1.425	0.705	1.900	3.128	0.845	2.599
12	chr1	9553387	9557164	+	0	NA	intron (NR_027664, intron 5 of 12)	intron (NR_027664, intron 5 of 12)	7229	NR_027664	76187	Mm.28514	NM_175236	ENSMUSG00000025911	Adhfe1	6330565B14Rik|AI043035|Adh8	alcohol dehydrogenase, iron containing, 1	protein-coding	0.385	0.656	0.324	0.470	0.100	0.130	0.286	0.402	0.362	0.375	0.267	0.133	0.213	0.142	0.273	0.787	0.472	0.575	1.082	1.172	0.989	4.053	0.456	0.493	0.513
12623	chr6	115650510	115651509	+	0	NA	intron (NM_029780, intron 1 of 16)	B3|SINE|B2	25626	NM_029780	110157	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	1.981	1.615	1.708	1.661	0.903	0.896	4.877	6.160	2.562	1.508	0.945	1.469	3.349	4.047	5.573	8.166	4.169	3.560	0.672	0.468	0.123	0.360	nan	0.363	2.237
1554	chr10	84999179	85002296	+	0	NA	intron (NM_001013441, intron 8 of 8)	intron (NM_001013441, intron 8 of 8)	83124	NM_183172	237422	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	nan	0.764	0.462	0.385	0.328	0.149	0.362	0.449	0.536	0.670	1.009	0.638	0.282	nan	0.327	0.566	0.398	nan	5.125	5.220	1.798	7.255	6.348	3.749	0.775
10531	chr4	126429463	126436048	+	0	NA	Intergenic	Intergenic	-3213	NM_153402	214150	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	5.921	4.329	1.746	4.831	1.832	1.084	5.423	5.778	3.254	4.776	2.518	1.938	5.473	6.126	nan	6.105	3.381	5.401	4.549	3.862	3.362	8.290	2.013	2.180	8.533
2168	chr11	51668408	51673803	+	0	NA	Intergenic	B3A|SINE|B2	17529	NM_025319	66050	Mm.35693	NM_025319	ENSMUSG00000007777	0610009B22Rik	-	RIKEN cDNA 0610009B22 gene	protein-coding	11.933	12.602	5.565	12.712	6.583	4.893	10.286	9.936	5.825	15.138	8.165	4.830	8.393	14.148	7.872	9.312	8.580	9.374	nan	3.374	4.277	nan	nan	5.134	13.864
15441	chr9	102759692	102763960	+	0	NA	Intergenic	Intergenic	22178	NR_033301	434510	Mm.387937	NM_001034892	ENSMUSG00000093812	Gm5627	EG434510	predicted gene 5627	ncRNA	3.359	0.858	0.624	2.466	2.641	1.282	3.581	2.329	3.345	3.294	0.943	0.784	4.946	5.334	3.184	5.422	4.591	4.729	0.813	0.496	0.661	1.028	0.700	0.424	4.174
9670	chr3	106284757	106301023	+	0	NA	Intergenic	Lx8|LINE|L1	-73411	NM_145126	104183	Mm.425140	NM_145126	ENSMUSG00000063779	Chil4	Chi3l4|Ym2	chitinase-like 4	protein-coding	7.574	5.539	1.879	5.327	3.284	1.605	8.246	7.656	6.079	6.918	5.698	3.279	9.810	8.322	8.223	9.550	7.954	8.262	1.084	1.214	0.897	0.914	0.705	0.505	10.436
3707	chr12	109416239	109418642	+	0	NA	Intergenic	Intergenic	-35383	NR_033813	13386	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta-like 1 homolog (Drosophila)	protein-coding	7.899	10.807	2.716	8.924	2.936	1.948	5.337	7.485	nan	nan	4.923	2.621	6.139	7.360	7.246	11.690	5.460	8.184	4.927	1.611	3.014	7.492	2.352	3.790	18.701
3518	chr12	81380303	81383111	+	0	NA	intron (NM_001309810, intron 3 of 4)	RLTR17D_Mm|LTR|ERVK	-2221	NM_001038995	214321	Mm.444671	NM_001038995	ENSMUSG00000072974	Gm4787	Adam4b|EG214321	predicted gene 4787	protein-coding	0.878	0.509	0.679	0.701	1.063	1.611	0.930	0.928	1.182	0.828	1.442	1.110	0.441	nan	0.522	nan	1.141	0.897	4.826	4.068	5.553	3.333	7.482	7.064	1.005
6852	chr17	74295809	74301719	+	0	NA	TTS (NM_024428)	TTS (NM_024428)	-3901	NM_133771	76890	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	7.825	4.095	1.648	6.256	5.614	3.306	nan	7.612	5.980	5.328	7.095	2.539	6.103	8.382	6.296	8.538	7.624	6.843	1.622	2.518	1.433	2.501	1.458	0.825	8.335
7463	chr19	3819313	3821018	+	0	NA	Intergenic	Intergenic	-31608	NM_001271496	12660	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	1.800	0.603	0.546	1.257	1.608	1.894	7.417	4.846	2.121	1.504	1.136	1.054	2.968	3.759	3.848	4.065	3.372	4.340	0.411	0.677	0.385	0.646	0.894	0.790	2.641
9019	chr2	167365747	167371806	+	0	NA	Intergenic	ID_B1|SINE|B4	-19598	NM_019835	56336	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	4.962	2.284	0.888	7.172	5.020	3.376	4.687	3.300	3.608	5.072	1.378	1.298	4.972	6.093	3.905	4.883	3.855	nan	nan	1.266	1.523	2.132	1.000	1.101	9.580
6457	chr17	27893434	27898584	+	0	NA	3' UTR (NM_001080769, exon 21 of 21)	3' UTR (NM_001080769, exon 21 of 21)	11715	NM_026836	68776	Mm.267998	NM_026836	ENSMUSG00000024218	Taf11	1110038O14Rik|28kDa|AI115401|AL024207|AW552398|PRO214|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding	2.509	0.904	0.532	0.878	0.798	0.466	2.145	2.553	1.094	1.224	0.724	0.868	1.468	2.338	1.833	1.863	1.437	1.955	2.998	1.829	1.584	4.956	2.751	1.801	2.914
3343	chr12	56573254	56576495	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-16185	NR_046003	97836	Mm.410567	NR_046002	ENSMUSG00000092515	C87198	-	expressed sequence C87198	ncRNA	6.019	nan	1.626	6.504	4.130	1.919	1.897	4.410	3.631	3.224	3.049	2.200	1.774	4.011	2.928	3.477	1.879	4.387	1.120	1.549	0.928	1.637	0.978	0.753	4.229
6431	chr17	26625484	26627451	+	0	NA	intron (NM_026170, intron 4 of 9)	intron (NM_026170, intron 4 of 9)	-49929	NM_025272	11974	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	2.524	1.506	0.685	5.762	1.229	0.586	1.039	1.265	1.555	1.396	1.167	0.869	0.991	1.159	1.761	2.106	0.481	2.709	1.209	1.111	0.693	5.889	1.070	0.530	2.578
6951	chr17	87762556	87770003	+	0	NA	intron (NM_199251, intron 1 of 1)	MER90|LTR|ERV1	31715	NM_199251	210741	Mm.312046	NM_199251	ENSMUSG00000050138	Kcnk12	mntk1	potassium channel, subfamily K, member 12	protein-coding	1.504	2.166	0.686	1.280	0.865	0.346	0.780	0.792	nan	1.100	0.632	0.827	0.654	1.083	1.362	1.922	0.575	1.485	4.073	3.243	2.491	7.838	3.070	2.366	1.988
11724	chr5	124978820	124982316	+	0	NA	Intergenic	Intergenic	-22907	NM_028443	73121	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	5.116	3.412	0.646	8.610	1.754	1.606	4.109	2.782	3.505	6.749	3.617	1.280	3.552	4.376	6.016	6.250	2.637	6.551	nan	0.968	1.491	3.230	nan	1.868	7.883
10211	chr4	82055567	82057313	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-8940	NR_040659	545641	Mm.216028	NR_040659	ENSMUSG00000085022	Gm5860	EG545641	predicted gene 5860	ncRNA	3.372	0.838	0.148	3.727	1.946	0.552	1.790	2.525	3.102	2.172	1.728	2.261	2.131	1.861	2.098	2.205	2.044	3.430	1.942	2.070	0.255	3.827	0.870	0.033	1.597
4036	chr13	42348870	42351175	+	0	NA	Intergenic	(TTTC)n|Simple_repeat|Simple_repeat	48546	NM_010104	13614	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	5.357	nan	0.451	2.399	4.782	2.279	3.202	4.740	nan	3.204	2.764	1.092	4.583	5.069	4.191	nan	2.945	3.797	0.447	0.640	0.425	0.424	0.415	0.334	4.561
6315	chr17	7030842	7034080	+	0	NA	intron (NM_001033442, intron 2 of 3)	B3A|SINE|B2	6918	NM_001033442	381059	Mm.490353	NM_001033442	ENSMUSG00000095720	Gm1604b	ENSMUSG00000073470|Gm1604	predicted gene 1604b	protein-coding	10.367	11.786	4.747	10.719	9.589	6.599	14.455	9.865	7.239	10.381	9.059	5.557	11.316	14.754	14.045	15.711	11.137	11.365	6.606	4.135	3.048	7.394	5.884	5.041	16.657
11119	chr5	31877549	31880143	+	0	NA	intron (NM_144541, intron 6 of 11)	intron (NM_144541, intron 6 of 11)	180796	NM_144541	107976	Mm.482126	NM_144541	ENSMUSG00000052139	Bre	6030405P19Rik|AI429776|B830038C02Rik	brain and reproductive organ-expressed protein	protein-coding	6.301	1.709	1.073	4.147	7.749	3.590	10.735	5.109	5.442	7.090	6.604	3.622	6.278	10.530	8.845	7.173	5.092	6.917	1.294	1.104	0.808	0.848	1.616	0.557	6.606
3467	chr12	78047474	78056811	+	0	NA	Intergenic	L1Md_A|LINE|L1	-174513	NM_172952	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	4.347	2.054	1.039	3.615	4.036	2.549	2.871	1.487	3.737	4.901	2.550	1.288	4.812	6.784	3.944	4.014	4.399	6.060	0.732	0.996	0.683	1.110	0.419	0.387	4.909
1522	chr10	80864158	80865934	+	0	NA	intron (NM_175195, intron 8 of 14)	intron (NM_175195, intron 8 of 14)	9771	NM_175195	73218	Mm.3285	NM_175195	ENSMUSG00000035206	Sppl2b	3110056O03Rik|AW550292|PSL1	signal peptide peptidase like 2B	protein-coding	4.568	2.841	0.898	5.408	2.414	0.952	2.080	2.837	2.463	3.570	1.709	0.582	1.526	2.124	nan	3.603	2.116	4.329	nan	1.269	0.992	1.152	0.805	0.537	5.027
12766	chr6	134175916	134176732	+	0	NA	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	140624	NM_007961	14011	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	2.748	5.752	2.865	2.113	0.787	0.296	4.650	3.650	1.888	1.379	1.773	1.164	3.626	4.412	7.294	4.301	1.870	2.707	1.180	0.932	0.659	1.031	0.378	0.699	3.533
136	chr1	40238158	40241191	+	0	NA	intron (NM_008362, intron 1 of 10)	intron (NM_008362, intron 1 of 10)	14594	NM_008362	16177	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	4.467	0.739	0.779	1.728	3.423	2.249	2.720	1.234	2.706	2.927	1.156	0.960	3.245	2.761	2.090	4.615	3.963	2.218	0.836	1.236	0.929	0.586	0.848	0.705	3.288
116	chr1	38053136	38056490	+	0	NA	exon (NM_019570, exon 19 of 23)	exon (NM_019570, exon 19 of 23)	56803	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	12.061	10.258	3.117	8.105	4.584	2.573	7.284	7.188	5.621	8.108	6.802	4.043	7.723	9.210	8.473	12.396	7.738	8.705	4.405	2.407	2.379	4.872	2.411	2.638	12.035
1197	chr10	26543506	26547010	+	0	NA	Intergenic	Intergenic	129393	NR_033633	667572	Mm.482728	NR_033633	ENSMUSG00000098179	Gm8709	EG667572	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	5.277	0.666	0.479	1.796	2.312	0.838	6.006	3.754	3.369	2.992	1.297	1.760	4.334	4.332	3.611	3.164	4.398	3.319	0.867	1.152	0.525	0.566	0.971	0.623	2.541
12458	chr6	91336846	91341210	+	0	NA	Intergenic	Intergenic	72341	NM_009527	22421	Mm.56964	NM_009527	ENSMUSG00000030093	Wnt7a	AI849442|Wnt-7a|px|tw	wingless-type MMTV integration site family, member 7A	protein-coding	3.621	0.608	0.399	2.834	5.481	1.887	10.296	5.125	3.849	4.271	0.990	0.853	5.900	8.936	7.109	8.564	4.369	7.067	nan	0.484	0.265	0.721	0.550	0.348	7.744
6523	chr17	31038961	31042092	+	0	NA	Intergenic	Intergenic	-17168	NM_009593	11307	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP-binding cassette, sub-family G (WHITE), member 1	protein-coding	0.824	0.756	0.298	2.972	0.433	0.307	0.344	0.227	0.561	0.360	0.188	0.381	0.160	0.307	0.526	nan	0.267	2.336	4.786	4.128	2.494	4.580	2.089	1.165	0.646
10725	chr4	135865504	135868162	+	0	NA	intron (NM_010178, intron 5 of 5)	intron (NM_010178, intron 5 of 5)	7013	NM_026383	52830	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	6.551	11.716	3.674	8.863	3.294	2.421	6.911	5.409	3.590	9.381	5.018	2.853	6.506	8.105	8.067	9.839	4.251	nan	7.253	2.518	4.181	9.671	nan	9.354	14.012
4390	chr13	110032069	110035378	+	0	NA	Intergenic	Intergenic	129914	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	7.200	nan	0.392	4.519	10.264	5.761	7.752	7.918	nan	nan	6.943	5.901	9.777	12.207	6.708	7.654	6.005	nan	1.399	1.302	0.741	nan	0.951	0.747	6.133
15775	chrX	96343867	96346570	+	0	NA	intron (NM_001310755, intron 2 of 10)	intron (NM_001310755, intron 2 of 10)	22701	NM_001310754	245525	Mm.166749	NM_172931	ENSMUSG00000045802	Hsf3	B230358A15Rik|HSF 3|HSTF 3	heat shock transcription factor 3	protein-coding	4.342	1.301	0.528	4.029	2.941	1.452	4.252	5.790	2.722	3.630	2.624	2.491	4.219	5.521	4.592	5.567	2.602	4.390	0.720	0.853	0.517	1.493	1.170	1.017	6.181
15591	chr9	120479002	120481979	+	0	NA	Intergenic	Intergenic	-12116	NM_026892	68969	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	6.349	10.158	2.890	6.309	2.653	1.527	5.638	5.398	4.230	6.469	4.964	4.154	4.388	5.954	7.132	7.312	4.263	6.717	3.397	2.084	2.248	4.505	nan	2.530	9.989
14982	chr9	41927633	41934005	+	0	NA	Intergenic	L1ME1|LINE|L1	193470	NM_011436	20660	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	3.809	7.280	2.882	4.322	2.360	1.094	5.651	5.229	3.612	6.000	3.057	1.730	4.973	6.934	5.352	6.131	3.696	4.992	nan	1.257	1.074	1.673	1.962	1.523	6.201
8596	chr2	120456256	120458405	+	0	NA	non-coding (NR_040608, exon 5 of 5)	non-coding (NR_040608, exon 5 of 5)	-6263	NM_001177799	12335	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	3.019	0.996	0.831	4.053	0.724	0.266	0.988	0.761	2.158	1.574	1.163	0.526	nan	1.197	1.375	2.180	1.236	3.112	1.548	1.026	0.600	1.466	0.609	0.300	nan
14118	chr8	34710045	34714822	+	0	NA	Intergenic	Intergenic	-72117	NR_040706	330734	Mm.149998	NR_040706	ENSMUSG00000109819	B930018H19Rik	B930018H19	RIKEN cDNA B930018H19 gene	ncRNA	6.762	4.893	1.824	6.175	6.326	4.680	4.348	8.875	4.028	7.817	7.002	4.978	5.939	7.244	5.953	7.251	6.292	5.857	3.226	3.484	3.410	5.136	2.874	3.584	nan
10428	chr4	117919433	117923242	+	0	NA	Intergenic	Lx8|LINE|L1	-6338	NM_146152	230673	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	1.417	0.686	0.434	2.040	1.718	0.868	2.039	2.035	1.648	1.992	1.881	0.725	1.971	3.468	2.846	4.036	1.076	3.115	0.746	0.492	0.483	1.539	0.547	0.224	4.367
308	chr1	74443706	74445248	+	0	NA	exon (NM_001310662, exon 21 of 24)	exon (NM_001310662, exon 21 of 24)	35093	NM_009509	22349	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	10.212	8.918	4.850	7.068	5.681	4.741	8.192	6.604	5.606	7.272	6.042	3.067	8.103	9.787	7.476	10.730	9.040	5.826	4.229	nan	3.753	4.333	nan	5.919	nan
4604	chr14	35360681	35363188	+	0	NA	intron (NM_008166, intron 8 of 15)	intron (NM_008166, intron 8 of 15)	450044	NM_001033766	239036	Mm.239970	NM_001033766	ENSMUSG00000041068	4930596D02Rik	-	RIKEN cDNA 4930596D02 gene	protein-coding	6.310	4.371	1.322	5.315	1.983	1.476	5.880	6.934	3.791	6.065	5.200	3.733	6.755	6.776	8.682	9.011	4.034	6.662	4.854	1.623	1.564	4.984	1.395	1.850	14.973
10985	chr4	154560600	154563835	+	0	NA	intron (NM_001177995, intron 1 of 15)	intron (NM_001177995, intron 1 of 15)	74150	NR_045643	320939	Mm.436738	NR_045643		5930403L14Rik	-	RIKEN cDNA 5930403L14 gene	ncRNA	4.445	2.221	0.643	6.255	5.212	3.444	2.104	3.836	3.360	3.823	2.994	1.412	2.451	3.488	3.248	4.330	1.968	4.672	1.353	1.449	1.152	1.727	1.236	0.870	4.685
3485	chr12	80539814	80544004	+	0	NA	intron (NM_001081421, intron 1 of 14)	intron (NM_001081421, intron 1 of 14)	22919	NM_001081421	108760	Mm.308296	NM_001081421	ENSMUSG00000021130	Galnt16	5730405L21Rik|AI415388|Galntl1|mpp-GalNAc-T16	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 16	protein-coding	4.780	8.683	6.257	2.656	1.632	0.796	3.164	2.861	4.052	3.383	3.510	1.081	5.788	3.889	4.234	nan	6.411	3.824	0.995	0.949	0.431	0.839	0.587	0.440	3.407
14947	chr9	32479737	32480956	+	0	NA	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	61106	NM_008026	14247	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	5.463	13.186	6.668	5.257	3.190	2.623	3.114	1.826	3.315	4.538	1.958	1.493	1.297	2.678	2.372	3.496	1.730	3.314	1.815	3.778	3.785	1.392	2.425	2.544	3.921
7142	chr18	35993864	36002823	+	0	NA	intron (NR_110349, intron 7 of 14)	intron (NR_110349, intron 7 of 14)	33513	NR_110349	74002	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	1.445	2.432	0.834	2.397	0.900	0.584	0.681	2.200	0.881	1.023	0.680	0.879	0.535	nan	1.288	nan	0.708	1.263	3.843	2.153	1.902	4.867	2.438	1.805	1.482
7314	chr18	62928450	62932750	+	0	NA	intron (NM_133237, intron 1 of 4)	intron (NM_133237, intron 1 of 4)	8273	NM_133237	494504	Mm.391102	NM_133237	ENSMUSG00000071847	Apcdd1	AB023957|AU041258|Drapc1|EIG180	adenomatosis polyposis coli down-regulated 1	protein-coding	nan	nan	0.262	nan	0.155	0.028	0.246	nan	0.323	0.312	0.388	0.231	nan	0.223	0.281	0.579	0.317	nan	nan	1.283	0.722	4.905	1.424	0.843	nan
5968	chr16	29841861	29846128	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	135130	NR_037689	328657	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	1.892	2.205	1.267	1.318	1.166	0.466	2.539	3.909	1.755	1.721	1.206	0.680	2.159	2.669	3.553	5.632	3.184	1.875	0.692	0.748	0.406	0.852	nan	0.370	3.184
15202	chr9	64948893	64950914	+	0	NA	intron (NM_144813, intron 1 of 9)	intron (NM_144813, intron 1 of 9)	1704	NM_144813	214111	Mm.156124	NM_144813	ENSMUSG00000034452	Slc24a1	-	solute carrier family 24 (sodium/potassium/calcium exchanger), member 1	protein-coding	0.471	1.748	0.258	1.008	0.083	0.101	0.682	1.902	0.591	1.176	0.431	0.811	0.440	0.396	nan	1.075	0.712	0.603	nan	1.773	2.712	4.418	3.697	3.959	1.677
9260	chr3	41357188	41358768	+	0	NA	Intergenic	(TCTG)n|Simple_repeat|Simple_repeat	135221	NR_040385	78706	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	5.346	0.610	0.737	0.863	4.396	3.215	5.298	5.180	nan	2.096	1.651	1.438	2.229	4.208	3.911	3.229	5.337	2.356	nan	1.408	0.919	nan	0.636	0.431	2.291
5843	chr16	17944648	17947065	+	0	NA	Intergenic	Intergenic	-17637	NM_153150	13358	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	4.351	0.514	0.825	3.927	4.445	4.107	2.976	4.158	3.957	4.040	1.738	1.660	6.268	7.628	5.106	6.887	5.154	5.265	0.655	1.121	1.463	0.632	0.801	0.770	5.539
15010	chr9	44132274	44136176	+	0	NA	promoter-TSS (NM_023061)	promoter-TSS (NM_023061)	-433	NM_023061	84004	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	7.266	8.649	3.569	5.732	2.864	1.764	4.902	5.239	4.928	5.670	4.456	1.891	5.792	7.414	7.201	nan	3.184	6.716	3.627	2.141	2.762	3.933	2.772	1.739	9.669
7635	chr19	21851740	21854943	+	0	NA	intron (NM_001033759, intron 22 of 23)	MER2|DNA|TcMar-Tigger	75001	NM_031997	83921	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	6.669	6.124	1.494	9.374	2.699	0.925	6.987	6.704	5.443	8.733	5.080	2.958	5.601	6.527	8.667	8.025	3.894	nan	1.306	1.290	1.362	3.799	1.400	1.897	11.071
5295	chr15	73210297	73211662	+	0	NA	intron (NM_007982, intron 29 of 31)	intron (NM_007982, intron 29 of 31)	-26032	NM_153178	239528	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|ENSMUSG00000072493|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	2.325	nan	0.696	1.667	2.880	3.563	nan	2.842	2.255	2.462	nan	1.767	3.306	4.112	2.594	1.584	2.256	3.521	0.798	0.670	0.217	nan	1.041	1.069	1.587
5992	chr16	31467310	31468955	+	0	NA	Intergenic	Intergenic	39379	NM_001122683	71911	Mm.293470	NM_175177	ENSMUSG00000046598	Bdh1	2310032J20Rik|AI327223|Bdh	3-hydroxybutyrate dehydrogenase, type 1	protein-coding	3.686	0.387	0.324	1.623	5.103	2.915	2.827	5.218	3.171	2.330	0.949	1.194	2.970	3.338	3.049	4.993	3.096	6.195	0.825	0.629	0.691	0.323	nan	0.312	4.784
13024	chr7	26212131	26227095	+	0	NA	Intergenic	L1_Mus2|LINE|L1	46204	NM_010000	13094	Mm.14413	NM_010000	ENSMUSG00000040660	Cyp2b9	Cyp2b	cytochrome P450, family 2, subfamily b, polypeptide 9	protein-coding	6.790	3.455	1.807	6.158	5.345	3.009	5.015	10.725	5.843	5.894	7.514	3.839	6.995	8.243	7.289	7.077	6.296	8.412	2.064	1.830	1.131	2.274	1.568	1.177	7.739
15638	chr9	123389923	123393074	+	0	NA	intron (NM_153168, intron 3 of 20)	MLTR18C_MM|LTR|ERVK	24558	NM_153168	102436	Mm.276076	NM_153168	ENSMUSG00000035202	Lars2	AI035546|Kiaa0028|LEURS	leucyl-tRNA synthetase, mitochondrial	protein-coding	3.441	5.180	3.527	2.766	nan	1.111	2.473	3.620	nan	2.218	0.968	1.190	nan	2.321	2.780	3.408	2.907	nan	2.960	2.454	1.884	2.328	5.265	3.345	3.326
15445	chr9	102937863	102939333	+	0	NA	Intergenic	Intergenic	-69891	NM_033314	24059	Mm.207106	NM_033314	ENSMUSG00000032548	Slco2a1	2310021C19Rik|Pgt|Slc21a2|mPgt	solute carrier organic anion transporter family, member 2a1	protein-coding	2.883	1.121	0.732	5.255	1.551	1.248	0.811	0.659	2.271	2.409	0.936	0.420	0.332	1.691	1.746	1.771	1.111	3.953	0.387	1.049	0.522	0.686	0.674	0.256	2.092
3027	chr11	117073746	117075660	+	0	NA	Intergenic	RMER17A|LTR|ERVK	-2080	NR_027059	76972	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	4.105	nan	0.749	0.498	1.837	1.856	9.152	5.249	1.908	1.866	1.588	1.500	2.799	4.422	5.026	4.800	4.485	2.346	3.259	nan	3.072	2.017	2.763	2.845	6.118
8471	chr2	101667310	101672676	+	0	NA	Intergenic	Intergenic	-8427	NM_009424	22034	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	5.580	1.008	0.347	3.084	2.050	1.115	6.577	4.925	2.176	2.355	0.559	0.473	6.621	4.169	5.476	6.216	4.894	4.214	1.222	0.884	0.695	1.520	2.489	1.705	4.189
8301	chr2	64920528	64922264	+	0	NA	intron (NM_016719, intron 9 of 13)	intron (NM_016719, intron 9 of 13)	101370	NM_016719	50915	Mm.214554	NM_016719	ENSMUSG00000026888	Grb14	AI505286	growth factor receptor bound protein 14	protein-coding	2.954	0.287	0.388	2.172	1.393	0.598	1.973	1.774	3.841	4.428	0.718	0.707	4.533	3.467	3.958	5.764	4.010	5.553	1.936	1.200	0.545	0.801	1.814	1.523	2.226
13434	chr7	97215454	97217331	+	0	NA	intron (NM_001162477, intron 1 of 9)	MTA_Mm|LTR|ERVL-MaLR	109572	NM_001177412	244144	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	5.406	4.403	2.532	3.674	2.097	2.084	1.825	2.622	3.778	3.801	3.094	1.390	1.728	3.531	2.764	2.729	2.533	3.063	nan	1.957	1.849	0.762	0.836	0.496	2.927
301	chr1	74279968	74288249	+	0	NA	promoter-TSS (NM_025580)	promoter-TSS (NM_025580)	630	NM_146110	227290	Mm.379371	NM_146110	ENSMUSG00000006299	Aamp	AU040907|Aamp-rs	angio-associated migratory protein	protein-coding	10.074	10.762	5.709	7.764	6.506	4.832	7.882	8.082	7.038	8.222	6.188	5.030	8.443	9.244	8.444	12.793	8.964	9.625	nan	nan	2.687	3.086	nan	3.251	8.791
15849	chrX	153929269	153930351	+	0	NA	Intergenic	Intergenic	82830	NM_001243017	625713	Mm.489577	NM_001243017	ENSMUSG00000094592	Gm15140	OTTMUSG00000019256	predicted gene 15140	protein-coding	2.918	8.928	1.747	4.640	1.358	1.269	2.029	1.974	2.044	9.418	2.363	1.347	2.282	3.402	3.752	3.976	1.865	4.719	3.007	1.120	1.687	3.297	1.904	4.555	9.336
8506	chr2	103405142	103410431	+	0	NA	Intergenic	B1_Mur1|SINE|Alu	-4312	NM_001145813	13711	Mm.20888	NM_010125	ENSMUSG00000027186	Elf5	ESE-2|ESE-5|ESE-5.	E74-like factor 5	protein-coding	1.603	5.630	1.513	3.323	0.564	0.373	0.706	1.799	1.178	1.842	1.230	0.723	1.126	1.256	1.979	2.128	0.925	2.260	2.323	1.370	1.011	4.299	1.812	1.056	3.619
8148	chr2	32766117	32775050	+	0	NA	intron (NM_001290567, intron 7 of 14)	intron (NM_001290567, intron 7 of 14)	4756	NM_001290564	338348	Mm.475130	NM_177384	ENSMUSG00000039021	Ttc16	1200002K10Rik	tetratricopeptide repeat domain 16	protein-coding	7.782	1.607	0.771	5.470	6.399	4.636	6.432	6.801	4.957	5.774	4.558	3.326	5.979	7.561	6.091	8.089	6.225	6.076	1.784	1.535	1.577	2.241	1.495	1.343	9.392
6573	chr17	34810565	34815052	+	0	NA	intron (NM_011413, intron 31 of 40)	C-rich|Low_complexity|Low_complexity	-8382	NM_009995	13079	Mm.440407	NM_009995	ENSMUSG00000024365	Cyp21a1	21-OH|21OH|21OHA|21OHB|CYP21OH-A|Cyp21|Cyp21-ps1|Cyp21B|Cyp21a2-ps|Cyp21a2ps|Oh21-1|Oh21-2	cytochrome P450, family 21, subfamily a, polypeptide 1	protein-coding	nan	0.645	0.408	2.527	6.590	4.331	8.578	4.187	1.777	3.135	0.536	0.637	4.581	9.154	6.018	7.404	7.237	4.838	0.594	0.407	0.374	0.443	0.551	0.364	8.581
8207	chr2	37586055	37587773	+	0	NA	intron (NM_009261, intron 15 of 16)	intron (NM_009261, intron 15 of 16)	60371	NM_009261	20744	Mm.237095	NM_009261	ENSMUSG00000026915	Strbp	6430510M02Rik|AI852513|C230082I21Rik|C86322|Spnr	spermatid perinuclear RNA binding protein	protein-coding	1.249	6.477	3.931	1.268	1.801	0.810	2.048	2.547	1.542	nan	0.340	0.289	4.291	4.060	1.588	1.640	1.715	1.654	2.370	1.713	1.795	2.205	0.572	0.951	1.691
4686	chr14	55731586	55738566	+	0	NA	Intergenic	MIRb|SINE|MIR	10608	NM_026819	52585	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	0.821	nan	0.424	1.056	0.788	0.410	0.495	nan	0.518	0.989	0.191	0.437	0.445	1.100	0.906	0.903	0.603	1.002	3.861	3.899	2.695	5.623	3.780	3.552	1.403
9290	chr3	51837754	51839617	+	0	NA	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	177506	NM_001310482	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	2.621	1.251	0.860	2.908	2.163	1.020	3.128	5.935	2.773	1.788	2.092	1.773	3.417	3.973	2.971	3.482	2.297	2.311	0.958	1.071	0.649	1.072	1.216	0.938	1.691
1758	chr10	116178504	116181289	+	0	NA	intron (NM_011217, intron 5 of 13)	L1_Mus4|LINE|L1	2545	NM_001161840	19279	Mm.336316	NM_011217	ENSMUSG00000020151	Ptprr	Gmcp1|PTP-SL|PTPBR7|RPTPRR|mPTP213	protein tyrosine phosphatase, receptor type, R	protein-coding	0.757	12.456	8.266	0.764	0.665	0.300	0.612	0.685	0.826	0.525	1.066	0.713	0.537	0.671	0.684	0.909	0.572	nan	0.814	0.642	0.765	0.906	0.440	0.734	0.795
15496	chr9	108139570	108142974	+	0	NA	intron (NM_007567, intron 1 of 11)	intron (NM_007567, intron 1 of 11)	4417	NR_126077	76873	Mm.436935	NR_126077	ENSMUSG00000102224	4930447F24Rik	-	RIKEN cDNA 4930447F24 gene	ncRNA	3.557	0.631	0.534	2.377	1.697	1.123	2.914	2.702	2.855	2.555	0.699	0.642	2.802	3.451	2.363	nan	2.244	nan	0.982	0.822	0.648	0.786	0.423	0.391	3.387
3063	chr11	118207009	118211870	+	0	NA	intron (NM_001112699, intron 1 of 12)	intron (NM_001112699, intron 1 of 12)	3303	NM_001112700	19157	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	5.033	2.966	0.953	5.156	3.229	1.450	nan	5.662	3.098	4.165	2.506	2.119	3.423	5.301	6.422	7.525	4.553	5.668	4.927	nan	1.488	5.790	4.039	2.007	5.723
7216	chr18	46563791	46565444	+	0	NA	intron (NM_173394, intron 2 of 2)	intron (NM_173394, intron 2 of 2)	9916	NM_173394	225471	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	6.028	2.348	2.094	3.641	6.639	4.315	2.363	4.141	2.070	3.223	2.575	1.093	2.414	3.788	2.278	2.241	2.451	2.842	1.507	2.051	1.894	1.100	2.070	1.503	2.751
9676	chr3	107135126	107137838	+	0	NA	Intergenic	MT2B2|LTR|ERVL	34915	NM_008417	16490	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|ENSMUSG00000074335|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	9.717	17.161	4.675	9.996	4.590	2.330	9.724	8.186	6.019	9.652	6.912	3.892	10.378	10.904	10.743	11.753	7.470	9.959	6.330	2.761	2.685	7.710	4.201	3.592	13.897
14598	chr8	112302138	112303560	+	0	NA	Intergenic	Lx3A|LINE|L1	266726	NR_132433	102640845	Mm.405615	NR_132433	ENSMUSG00000098075	Gm26994	-	predicted gene, 26994	ncRNA	13.839	14.144	5.214	14.117	8.331	6.325	10.638	13.670	7.339	15.432	8.113	7.857	10.776	14.237	13.263	15.021	11.129	12.120	5.576	4.669	5.986	8.991	4.107	6.080	20.219
12300	chr6	70761709	70764025	+	0	NA	Intergenic	Intergenic	29308	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	3.929	4.382	2.952	2.151	4.087	2.748	4.368	6.552	2.689	3.140	3.085	1.975	4.036	4.011	4.011	5.163	2.877	3.404	1.376	1.474	1.342	0.648	1.785	0.981	2.362
6762	chr17	57045419	57047535	+	0	NA	intron (NM_025877, intron 9 of 9)	intron (NM_025877, intron 9 of 9)	-4823	NM_175333	103775	Mm.33647	NM_175333	ENSMUSG00000011486	Slc25a41	4933406J04Rik|AI507137	solute carrier family 25, member 41	protein-coding	7.001	1.501	0.489	5.738	4.479	3.010	13.060	8.086	4.679	6.300	6.844	2.708	8.566	10.721	10.839	13.030	8.066	8.778	3.140	2.888	1.921	5.440	3.225	2.171	15.734
13266	chr7	73249955	73266403	+	0	NA	Intergenic	Lx2|LINE|L1	-52201	NR_105062	100505025	Mm.445959	NR_105062	ENSMUSG00000108530	LOC100505025	-	uncharacterized LOC100505025	ncRNA	3.990	8.940	4.729	nan	2.553	1.620	5.577	3.922	5.180	7.478	1.790	1.412	4.375	4.202	5.176	7.626	4.645	6.120	2.349	1.926	1.394	2.289	1.150	0.990	8.289
10740	chr4	137196528	137200710	+	0	NA	Intergenic	Intergenic	-33553	NR_040443	100503595	Mm.421314	NR_040443	ENSMUSG00000085833	Gm13003	OTTMUSG00000009822	predicted gene 13003	ncRNA	nan	0.979	0.573	3.088	4.751	3.951	10.010	3.482	nan	1.945	2.275	3.287	4.862	10.971	4.884	2.546	1.907	nan	1.397	1.092	0.574	1.573	nan	0.586	7.013
2258	chr11	59591863	59594813	+	0	NA	Intergenic	Intergenic	-3251	NM_146429	258421	Mm.377490	NM_146429	ENSMUSG00000048919	Olfr223	MOR256-30	olfactory receptor 223	protein-coding	2.613	0.828	0.316	2.891	1.728	1.280	2.866	1.670	2.795	3.238	0.685	0.607	3.911	5.808	3.346	4.245	2.414	4.445	nan	0.379	0.350	1.109	0.214	0.352	nan
9337	chr3	58995244	58999485	+	0	NA	Intergenic	Intergenic	-9614	NM_177855	329650	Mm.240059	NM_177855	ENSMUSG00000056476	Med12l	A130035F20|A630079M02|AU044581|TRALPUSH	mediator complex subunit 12-like	protein-coding	0.491	1.016	0.562	nan	0.396	0.300	0.723	0.582	0.696	0.677	10.690	4.930	0.468	0.393	nan	nan	0.505	nan	0.483	0.461	0.172	0.586	0.300	0.314	0.534
8221	chr2	38859756	38861661	+	0	NA	intron (NM_010264, intron 3 of 10)	L1MB4|LINE|L1	6878	NR_029904	723903		NR_029904	ENSMUSG00000065578	Mir181b-2	Mirn181b-2|mir-181b-2	microRNA 181b-2	ncRNA	8.287	10.990	3.154	6.838	4.783	3.402	5.877	9.173	4.645	7.459	6.117	3.621	6.551	8.079	7.865	10.726	7.297	6.966	3.882	2.439	2.878	4.149	3.012	2.578	13.392
12846	chr6	145715870	145719697	+	0	NA	Intergenic	B3|SINE|B2	-90600	NM_027760	71323	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	nan	0.723	0.402	nan	4.158	2.718	2.166	nan	2.478	nan	0.706	0.509	nan	4.762	2.610	nan	2.190	6.381	0.703	nan	0.641	nan	0.758	0.425	5.007
11504	chr5	104174678	104192569	+	0	NA	Intergenic	Intergenic	12920	NM_010080	666279	Mm.319832	NM_010080	ENSMUSG00000053268	Dspp	Dmp2|Dmp3|Dpp|Dsp	dentin sialophosphoprotein	protein-coding	5.789	4.284	1.678	6.072	4.618	2.942	nan	4.847	5.089	5.438	4.260	2.533	4.869	6.491	6.112	6.276	4.706	5.990	nan	1.999	1.718	2.301	1.732	1.919	6.271
10565	chr4	129260510	129262251	+	0	NA	promoter-TSS (NM_001285867)	promoter-TSS (NM_001285867)	24	NM_001285867	97130	Mm.331907	NM_001033189	ENSMUSG00000050390	C77080	Kiaa1522|mKIAA1522	expressed sequence C77080	protein-coding	0.837	7.258	5.892	3.093	1.287	1.368	2.061	2.101	1.105	1.189	0.959	1.082	1.046	0.892	nan	1.780	0.947	1.284	1.379	0.976	0.668	1.681	1.415	1.271	1.680
15620	chr9	122031253	122034268	+	0	NA	Intergenic	Intergenic	-36734	NM_153540	215494	Mm.402151	NM_153540	ENSMUSG00000066235	Pomgnt2	Ago61|C85492|Gtdc2	protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2	protein-coding	5.278	1.934	1.004	5.086	3.482	2.805	2.236	2.185	3.758	4.328	1.605	1.153	2.099	3.587	3.011	3.598	2.470	5.323	0.956	1.894	1.219	1.825	nan	0.984	3.222
796	chr1	162233894	162243539	+	0	NA	intron (NM_001038619, intron 13 of 20)	intron (NM_001038619, intron 13 of 20)	15348	NR_029796	387210		NR_029796	ENSMUSG00000065516	Mir214	Mirn214|mir-214|mmu-mir-214	microRNA 214	ncRNA	7.031	1.780	1.027	4.383	3.668	1.579	8.579	6.348	5.809	5.149	3.729	3.434	7.877	7.540	8.683	12.058	9.047	8.401	nan	1.825	0.821	2.929	nan	1.925	6.797
12013	chr5	151984767	151986882	+	0	NA	Intergenic	Intergenic	-334616	NM_027009	69263	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	2.810	0.879	0.366	3.980	3.212	1.180	1.099	1.170	3.447	2.403	1.122	0.860	1.475	2.837	1.744	2.365	1.549	3.382	1.315	0.766	0.581	0.839	1.069	0.861	1.673
2349	chr11	68504642	68506473	+	0	NA	intron (NM_001004435, intron 1 of 19)	intron (NM_001004435, intron 1 of 19)	2538	NR_126154	104709	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase, regulatory subunit 6	protein-coding	2.885	1.887	0.627	6.587	3.610	2.020	1.987	1.332	1.325	3.737	1.014	0.794	1.359	4.656	3.968	2.918	1.509	4.050	8.683	6.702	5.147	9.745	nan	7.539	6.664
5512	chr15	84061837	84063930	+	0	NA	intron (NM_029946, intron 1 of 31)	intron (NM_029946, intron 1 of 31)	2466	NM_029946	77627	Mm.196288	NM_029946	ENSMUSG00000022441	Efcab6	4931407K02Rik|4932408N08Rik|bM150J22.2|mKIAA1672	EF-hand calcium binding domain 6	protein-coding	3.510	2.446	0.945	8.193	1.948	1.069	nan	2.425	nan	3.742	1.908	2.157	1.778	3.061	3.022	3.713	nan	4.159	nan	0.717	0.977	2.613	0.921	1.171	4.962
6081	chr16	44237148	44241138	+	0	NA	Intergenic	Intergenic	65746	NM_001029889	207806	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	2.255	1.224	0.551	1.359	2.293	1.079	2.205	3.096	1.378	1.751	1.238	0.844	2.717	2.617	2.662	2.401	1.730	3.236	4.831	2.172	1.473	6.754	4.200	2.840	2.284
11209	chr5	44189625	44194255	+	0	NA	intron (NM_173764, intron 7 of 13)	RLTR53_Mm|LTR|ERVK	34666	NM_173764	231225	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	4.258	0.701	0.813	2.561	4.148	2.196	3.285	5.398	3.458	3.105	3.863	3.567	3.122	4.408	3.901	3.441	3.245	3.744	0.786	1.205	0.509	0.587	0.532	0.289	1.337
1541	chr10	82791764	82801052	+	0	NA	Intergenic	B3A|SINE|B2	-15715	NR_038042	70003	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	2.707	13.022	6.942	nan	0.915	0.697	0.769	0.867	1.376	2.233	0.550	0.583	0.990	1.242	nan	1.560	1.279	1.902	nan	2.594	1.947	2.244	2.009	1.659	2.271
4506	chr14	21436314	21438228	+	0	NA	intron (NM_001243041, intron 10 of 10)	B3|SINE|B2	-62499	NM_001205241	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	2.635	0.768	0.786	3.527	2.200	1.615	1.371	1.285	nan	2.075	4.888	0.947	0.840	3.002	1.193	1.613	1.168	2.710	0.661	0.668	0.967	nan	0.478	0.688	1.344
13594	chr7	117976156	117978513	+	0	NA	Intergenic	Intergenic	138813	NM_170669	267019	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	2.406	0.814	0.443	4.757	2.680	1.183	2.201	4.949	3.589	3.363	3.157	2.503	3.628	3.234	2.978	4.075	2.951	5.729	1.035	0.903	0.243	1.848	1.156	0.756	2.927
10444	chr4	118957092	118961287	+	0	NA	Intergenic	Lx5c|LINE|L1	-2778	NM_133892	100470	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	2.935	1.027	0.808	2.408	2.562	1.114	3.895	4.581	4.021	2.314	4.276	3.660	3.700	3.947	3.530	2.763	2.086	4.700	1.618	1.108	0.946	1.220	0.792	0.761	1.703
15416	chr9	99529488	99532922	+	0	NA	intron (NM_028768, intron 6 of 21)	B4A|SINE|B4	37694	NM_001166138	74125	Mm.234823	NM_028768	ENSMUSG00000032468	Armc8	1200015K23Rik|Gid5|HSPC056	armadillo repeat containing 8	protein-coding	4.443	1.289	0.496	4.218	1.627	0.998	4.418	2.642	3.514	3.936	4.257	3.292	5.408	5.923	4.884	5.755	3.864	3.730	0.837	0.921	0.920	1.109	1.041	0.862	9.077
12265	chr6	56731948	56736901	+	0	NA	intron (NM_030235, intron 8 of 15)	intron (NM_030235, intron 8 of 15)	19519	NM_030235	78937	Mm.105343	NM_030235	ENSMUSG00000029787	Avl9	5830411G16Rik|D730049P16Rik|mKIAA0241	AVL9 cell migration associated	protein-coding	5.303	1.057	0.726	3.654	3.290	2.499	9.585	8.071	3.780	5.146	1.518	1.167	11.852	8.308	8.749	8.103	5.234	7.106	nan	1.142	0.990	1.055	1.081	0.926	5.628
5136	chr15	38227245	38232971	+	0	NA	Intergenic	Intergenic	10905	NM_008757	18285	Mm.252830	NM_008757	ENSMUSG00000061923	Odf1	-	outer dense fiber of sperm tails 1	protein-coding	9.612	9.445	3.182	10.068	2.952	2.144	9.947	13.375	4.276	9.499	4.718	3.088	9.850	10.312	9.113	10.527	7.216	8.121	6.964	3.260	3.555	nan	4.778	4.840	12.598
5034	chr15	8642719	8644317	+	0	NA	intron (NM_148938, intron 6 of 9)	intron (NM_148938, intron 6 of 9)	67289	NM_148938	20512	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	2.409	0.864	0.601	1.912	4.925	2.994	3.373	2.112	1.113	2.244	2.082	0.409	2.999	3.842	3.042	3.535	4.549	2.082	0.720	1.297	0.535	0.372	0.853	0.825	2.703
13413	chr7	95346414	95352005	+	0	NA	Intergenic	Intergenic	-822035	NM_001310762	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	7.614	1.335	0.767	4.444	6.842	4.457	7.327	7.224	6.913	7.621	7.487	3.468	9.376	8.800	7.291	6.805	7.621	8.169	nan	1.643	0.934	0.709	0.825	0.703	5.191
4113	chr13	49439419	49440851	+	0	NA	intron (NR_075085, intron 7 of 13)	MTD|LTR|ERVL-MaLR	18521	NM_001276399	75678	Mm.390586	NM_199056	ENSMUSG00000021385	Ippk	1810043M15Rik|InsP6	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	protein-coding	4.344	0.982	0.672	2.959	1.699	0.938	2.601	4.536	1.980	2.756	3.538	0.965	2.152	3.315	2.664	4.352	2.106	3.796	1.215	nan	0.452	1.404	1.997	0.689	6.661
4889	chr14	79614653	79615543	+	0	NA	intron (NM_026474, intron 10 of 12)	ORR1A3|LTR|ERVL-MaLR	27407	NM_026474	67955	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	1.869	0.721	0.557	2.987	2.790	1.493	1.459	2.568	2.315	2.940	0.785	0.792	1.850	5.118	3.531	2.703	2.005	4.826	0.924	0.553	0.275	0.319	0.447	0.624	2.650
3044	chr11	117704330	117710414	+	0	NA	intron (NM_198022, intron 3 of 21)	L1ME1|LINE|L1	53083	NM_198022	217351	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	5.312	nan	2.420	3.819	3.299	2.897	5.575	7.414	3.441	nan	3.899	2.549	4.358	4.703	5.010	5.727	4.351	nan	2.002	nan	1.241	1.786	1.537	1.246	4.818
2108	chr11	44506050	44514511	+	0	NA	Intergenic	Intergenic	-8684	NM_028862	74315	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	0.622	8.502	4.841	0.560	0.337	0.188	0.412	nan	0.454	0.455	0.248	0.168	0.177	0.319	0.341	nan	0.501	nan	nan	0.422	0.232	nan	nan	0.220	0.366
6703	chr17	47815091	47816242	+	0	NA	3' UTR (NM_010783, exon 5 of 5)	3' UTR (NM_010783, exon 5 of 5)	17625	NM_001276391	17240	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	0.928	1.321	0.506	0.408	0.513	0.219	5.191	3.056	1.010	0.452	0.422	0.602	4.083	3.951	2.510	2.455	2.158	1.396	0.511	0.266	0.119	0.448	0.276	0.104	1.175
7848	chr19	47293613	47306147	+	0	NA	intron (NM_001164717, intron 8 of 13)	intron (NM_001164717, intron 8 of 13)	-26291	NR_105961	102466782		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	1.234	4.006	1.805	nan	1.425	0.985	0.788	0.741	0.916	1.010	0.629	0.472	0.441	1.281	0.854	1.014	0.790	nan	2.962	2.960	2.627	6.120	4.924	3.362	1.505
8231	chr2	48804012	48806269	+	0	NA	Intergenic	Lx5c|LINE|L1	-8969	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	11.950	9.605	3.936	6.848	4.931	2.373	9.389	10.981	4.393	7.142	7.524	3.798	5.936	9.450	7.404	10.793	9.780	7.334	5.659	3.753	4.350	5.319	4.361	3.958	14.417
888	chr1	173380801	173385374	+	0	NA	Intergenic	Intergenic	-15392	NM_053199	94332	Mm.330524	NM_053199	ENSMUSG00000005338	Cadm3	BIgR|Igsf4b|Necl-1|Necl1|SynCAM3|Tsll1	cell adhesion molecule 3	protein-coding	3.729	1.219	0.974	2.732	5.351	4.293	2.221	2.372	2.581	2.946	0.984	1.035	1.905	3.430	2.214	3.435	3.079	2.123	1.165	1.380	2.003	1.126	1.186	1.424	3.074
7541	chr19	9121651	9123775	+	0	NA	intron (NM_025610, intron 2 of 6)	RLTR49|LTR|ERVK	12853	NM_025610	66514	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	7.931	2.239	0.755	5.172	4.648	2.320	7.527	9.499	6.532	5.305	2.253	2.166	7.293	10.823	7.577	8.969	9.102	8.748	0.676	0.696	0.444	0.550	0.834	0.449	12.764
15830	chrX	138908275	138914685	+	0	NA	Intergenic	Intergenic	-2950	NM_013724	27206	Mm.482319	NM_013724	ENSMUSG00000052854	Nrk	AA407323|AA409510|AI225895|AV168563|AW538185|Nesk	Nik related kinase	protein-coding	3.023	0.307	0.244	1.973	1.550	0.776	3.806	6.591	3.061	4.432	0.629	0.605	4.569	4.246	4.347	5.170	3.513	3.986	0.681	0.436	0.554	0.305	0.373	0.220	2.355
13715	chr7	129163801	129165244	+	0	NA	Intergenic	Lx5c|LINE|L1	-92572	NM_001080963	381925	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	3.724	7.172	1.572	5.620	1.850	2.668	3.547	4.807	3.739	6.275	2.390	1.447	4.836	4.283	5.208	7.465	3.982	5.771	4.002	1.879	3.244	4.333	2.138	3.552	7.759
3743	chr12	112811871	112815231	+	0	NA	intron (NM_145450, intron 3 of 4)	intron (NM_145450, intron 3 of 4)	4576	NM_145450	217887	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Flj20080	cDNA sequence BC022687	protein-coding	8.250	8.109	1.917	8.353	2.874	2.872	6.399	5.331	nan	9.038	5.613	3.342	6.931	7.784	8.820	8.978	4.691	7.507	3.922	2.238	2.468	5.083	2.836	3.246	nan
6123	chr16	52370717	52372824	+	0	NA	intron (NM_009655, intron 1 of 15)	intron (NM_009655, intron 1 of 15)	81311	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	3.346	0.538	0.562	1.583	2.702	1.297	1.674	2.729	3.312	3.147	0.659	1.271	3.288	4.534	2.692	3.822	2.769	3.290	1.232	0.936	0.955	0.515	0.724	0.515	1.059
14504	chr8	97871095	97874254	+	0	NA	Intergenic	Intergenic	-1139213	NR_110579	100873092	Mm.414599	NR_110579	ENSMUSG00000089819	Gm15679	OTTMUSG00000025218	predicted gene 15679	ncRNA	5.029	1.225	0.664	3.895	1.790	0.763	2.720	6.355	3.236	3.545	2.556	2.091	4.920	4.262	6.107	7.264	5.004	4.924	1.047	0.911	1.032	2.708	1.336	0.953	8.968
9198	chr3	27880473	27885256	+	0	NA	intron (NM_001164437, intron 3 of 3)	ID_B1|SINE|B4	13504	NM_001164437	208613	Mm.59189	NM_001164437	ENSMUSG00000043164	Tmem212	E030011K20Rik|Gm564	transmembrane protein 212	protein-coding	5.582	1.211	0.924	2.918	4.183	2.445	nan	4.885	nan	3.584	5.083	3.523	5.114	6.430	5.134	5.445	6.514	5.809	5.165	3.359	2.685	5.864	3.751	2.806	4.792
15071	chr9	50575502	50577282	+	0	NA	intron (NM_008360, intron 2 of 5)	intron (NM_008360, intron 2 of 5)	11024	NM_008360	16173	Mm.1410	NM_008360	ENSMUSG00000039217	Il18	Igif|Il-18	interleukin 18	protein-coding	11.238	7.947	2.403	9.962	2.744	1.155	5.226	10.212	7.337	11.180	8.187	4.620	9.240	10.451	10.484	11.834	6.730	10.191	4.824	3.014	1.705	7.171	4.182	2.201	14.991
3683	chr12	104584494	104586040	+	0	NA	Intergenic	Intergenic	-112031	NM_010351	14836	Mm.129	NM_010351	ENSMUSG00000021095	Gsc	-	goosecoid homeobox	protein-coding	8.199	5.520	3.423	nan	2.552	1.039	3.326	2.268	nan	2.449	1.308	1.033	3.936	4.898	2.236	2.632	3.181	2.239	0.730	1.964	1.394	0.439	1.595	0.670	5.351
1161	chr10	20308017	20316264	+	0	NA	promoter-TSS (NM_001025393)	promoter-TSS (NM_001025393)	-329	NM_001025392	72567	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	5.743	0.728	0.705	2.657	3.159	1.793	4.403	4.536	4.358	4.918	0.515	0.710	5.435	6.034	6.472	6.813	6.090	4.999	0.596	0.700	0.601	0.726	0.457	0.316	nan
5940	chr16	24737073	24738475	+	0	NA	intron (NM_001145954, intron 2 of 7)	intron (NM_001145954, intron 2 of 7)	15919	NM_001145954	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	3.749	3.875	2.475	1.838	2.562	1.088	1.726	2.419	1.746	1.909	3.065	0.660	2.749	3.399	2.638	1.728	1.662	3.566	0.752	0.901	0.201	0.820	nan	0.144	3.295
12497	chr6	94595343	94600694	+	0	NA	intron (NM_026255, intron 7 of 9)	intron (NM_026255, intron 7 of 9)	8397	NR_106008	102466992		NR_106008	ENSMUSG00000098531	Mir7041	Gm27872|mmu-mir-7041	microRNA 7041	ncRNA	4.196	1.595	0.711	1.774	1.217	0.438	7.735	7.656	2.163	1.888	2.771	2.885	5.816	6.583	7.115	8.082	4.868	3.594	4.073	nan	1.777	6.054	2.936	2.016	3.289
6628	chr17	43469386	43477515	+	0	NA	TTS (NM_008585)	TTS (NM_008585)	29323	NM_008585	17287	Mm.5346	NM_008585	ENSMUSG00000023914	Mep1a	AI098089|AW107200|Mep-1|Mep-1a|Mep1	meprin 1 alpha	protein-coding	3.160	0.641	0.628	2.269	2.246	1.314	2.233	1.935	2.151	1.970	0.619	0.509	3.728	3.803	2.139	4.307	4.342	2.392	0.893	0.707	0.819	0.506	0.727	0.797	2.906
3406	chr12	71895509	71896914	+	0	NA	intron (NM_172464, intron 2 of 25)	intron (NM_172464, intron 2 of 25)	6668	NM_001286452	208846	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	3.558	0.580	0.489	2.251	5.114	3.691	4.445	3.133	1.988	2.005	3.789	3.012	3.251	5.201	3.907	4.218	3.728	3.379	0.861	0.490	0.472	0.714	0.588	0.397	3.890
2853	chr11	103173104	103174492	+	0	NA	intron (NM_019679, intron 1 of 26)	intron (NM_019679, intron 1 of 26)	2660	NM_019679	57778	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	4.587	2.584	0.846	5.231	3.742	2.615	6.964	4.746	nan	5.850	4.284	2.165	5.676	5.294	4.713	4.849	3.719	nan	0.901	1.001	1.585	nan	0.822	1.339	4.353
1380	chr10	67520090	67521807	+	0	NA	Intergenic	PB1D11|SINE|Alu	-16921	NM_010118	13654	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	8.954	0.785	0.397	4.865	5.549	4.874	5.575	6.707	6.320	8.460	1.918	2.653	9.026	10.116	5.170	7.477	9.970	6.746	0.792	1.390	1.700	0.946	0.499	0.795	4.163
15437	chr9	102615989	102623587	+	0	NA	intron (NM_001301689, intron 3 of 14)	intron (NM_001301689, intron 3 of 14)	6336	NM_001301689	28135	Mm.38910	NM_001081122	ENSMUSG00000032534	Cep63	4921501M07|AL450317.13gm1|AW107703|CD20R|D9Mgc41|D9Mgc48e|ET2	centrosomal protein 63	protein-coding	7.688	2.580	0.760	9.358	2.766	1.422	4.683	5.905	5.135	7.074	4.379	2.307	5.415	8.292	6.748	8.612	4.567	9.646	2.420	1.438	1.299	2.952	2.960	2.332	12.231
990	chr1	185874689	185878735	+	0	NA	intron (NR_030555, intron 4 of 6)	L1M5|LINE|L1	240598	NM_146106	226791	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	6.800	4.175	2.125	3.171	2.839	1.620	3.199	3.186	3.641	3.207	2.518	2.423	4.887	5.882	5.561	7.185	2.780	6.054	1.371	0.697	0.767	3.362	0.591	0.300	6.762
349	chr1	79740427	79752257	+	0	NA	intron (NM_027057, intron 1 of 4)	intron (NM_027057, intron 1 of 4)	15427	NM_001111279	69368	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	8.522	1.794	1.044	3.846	4.231	2.396	5.940	5.056	3.945	4.340	1.372	1.019	8.519	8.082	5.702	nan	5.953	nan	nan	nan	0.566	0.756	nan	0.582	nan
9445	chr3	88339998	88341156	+	0	NA	intron (NM_178246, intron 1 of 21)	intron (NM_178246, intron 1 of 21)	4317	NM_178246	229512	Mm.439830	NM_173188	ENSMUSG00000001415	Smg5	BC024683|mKIAA1089	Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	2.329	7.431	1.502	7.440	0.985	0.442	0.936	5.581	3.883	7.399	2.895	2.462	6.272	3.748	5.921	4.452	1.955	7.744	3.271	0.754	1.195	1.979	1.164	1.158	6.851
4772	chr14	65631201	65635041	+	0	NA	intron (NM_001195674, intron 12 of 18)	intron (NM_001195674, intron 12 of 18)	27854	NM_001195674	100503545	Mm.297364	NM_001195674	ENSMUSG00000061356	Nuggc	Gm600|SLIP-GC	nuclear GTPase, germinal center associated	protein-coding	4.021	1.216	0.738	2.782	0.897	0.433	2.033	1.740	3.264	3.400	1.248	0.449	1.220	1.723	1.956	5.219	3.585	3.794	0.956	nan	0.282	1.083	0.768	0.538	3.559
14288	chr8	72518683	72521582	+	0	NA	intron (NM_027485, intron 1 of 2)	intron (NM_027485, intron 1 of 2)	-27518	NM_177766	270066	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	8.219	10.984	3.285	9.195	5.258	3.130	6.201	8.893	5.171	8.523	6.611	3.621	7.746	9.614	8.927	10.818	6.482	8.572	nan	2.402	2.569	6.351	3.310	2.946	12.654
3970	chr13	36705778	36710939	+	0	NA	Intergenic	Intergenic	26119	NM_153529	68404	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	2.660	nan	0.377	1.320	1.115	0.346	nan	2.214	nan	nan	0.343	0.495	4.468	3.890	2.808	5.758	1.880	2.921	0.408	0.265	0.356	0.475	0.376	0.311	nan
5162	chr15	51810639	51818196	+	0	NA	intron (NM_080635, intron 2 of 7)	intron (NM_080635, intron 2 of 7)	51044	NM_080635	68135	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	3.234	1.947	1.640	1.451	1.340	0.768	5.918	6.265	3.760	3.090	1.103	1.031	7.332	4.362	4.977	4.322	5.481	4.159	1.483	1.317	0.832	1.312	1.449	1.051	1.617
3364	chr12	58498010	58506597	+	0	NA	Intergenic	L1MC2|LINE|L1	-233045	NM_025809	66864	Mm.280563	NM_025809	ENSMUSG00000045930	Clec14a	1200003C23Rik|AI642649	C-type lectin domain family 14, member a	protein-coding	1.078	nan	0.391	1.093	0.775	0.289	0.614	0.690	0.765	0.671	0.488	0.777	0.525	0.480	nan	nan	1.394	nan	5.939	4.245	2.934	7.678	4.371	3.214	0.737
5675	chr15	100426251	100436548	+	0	NA	Intergenic	B1_Mur2|SINE|Alu	8206	NR_040351	432982	Mm.234608	NM_001034883	ENSMUSG00000087444	Gm5475	EG432982	predicted gene 5475	ncRNA	5.259	4.186	2.045	4.808	2.295	1.424	5.089	8.058	2.663	4.276	1.104	1.112	7.255	8.082	6.050	nan	6.754	4.047	1.769	1.145	1.505	1.808	1.564	1.593	7.396
7101	chr18	32557692	32559076	+	0	NA	intron (NM_001048207, intron 1 of 2)	intron (NM_001048207, intron 1 of 2)	1650	NM_001347610	71683	Mm.292145	NM_027863	ENSMUSG00000090523	Gypc	0610037F22Rik|Cd236r	glycophorin C	protein-coding	9.951	14.168	11.982	4.175	2.306	1.668	8.102	9.847	2.534	3.374	1.456	2.561	4.300	4.517	3.817	4.399	5.038	3.913	nan	3.940	3.077	nan	1.436	1.690	6.303
3251	chr12	27152948	27156794	+	0	NA	intron (NR_045868, intron 1 of 3)	intron (NR_045868, intron 1 of 3)	5645	NR_045868	636791	Mm.423496	NM_001039248	ENSMUSG00000094002	Gm9866	EG636791|ENSMUSG00000052076	predicted gene 9866	ncRNA	2.679	2.315	0.860	3.625	1.189	0.733	1.678	1.274	1.002	2.584	0.545	0.300	1.804	1.512	2.986	4.144	1.316	3.725	5.427	2.668	2.380	6.212	3.753	3.706	6.737
7689	chr19	29771183	29773443	+	0	NA	intron (NM_172836, intron 2 of 7)	intron (NM_172836, intron 2 of 7)	33696	NM_172836	240613	Mm.313351	NM_172836	ENSMUSG00000046138	9930021J03Rik	ENSMUSG00000048936|Gm9832|mKIAA2026	RIKEN cDNA 9930021J03 gene	protein-coding	5.402	0.558	0.513	nan	2.169	1.516	5.456	3.748	1.302	1.351	nan	0.507	1.403	4.283	2.998	3.270	3.304	3.090	nan	0.151	0.583	0.589	nan	0.193	3.225
15347	chr9	79815770	79829159	+	0	NA	intron (NM_001081243, intron 4 of 5)	intron (NM_001081243, intron 4 of 5)	28823	NR_040734	74633	Mm.262175	NR_040734	ENSMUSG00000086918	4930429F24Rik	-	RIKEN cDNA 4930429F24 gene	ncRNA	5.198	1.033	0.681	2.948	2.659	1.218	4.422	4.053	4.214	6.082	1.089	0.907	6.220	5.720	6.335	7.052	4.565	5.884	0.552	nan	0.405	0.437	0.406	0.215	8.097
15789	chrX	100709951	100712126	+	0	NA	intron (NM_008446, intron 19 of 29)	Lx8b|LINE|L1	-18809	NM_023608	71584	Mm.283495	NM_023608	ENSMUSG00000019359	Gdpd2	9130017L10Rik|Gde3|Obdpf	glycerophosphodiester phosphodiesterase domain containing 2	protein-coding	1.393	0.344	0.310	1.038	1.013	0.649	2.198	4.156	1.451	1.864	2.455	1.716	1.866	1.760	1.416	1.853	4.454	1.562	0.478	1.016	0.771	0.505	0.576	0.451	0.776
13094	chr7	31036669	31038020	+	0	NA	intron (NM_008761, intron 5 of 8)	intron (NM_008761, intron 5 of 8)	2973	NR_106017	102465635		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	1.277	1.245	0.090	2.887	0.265	0.089	1.559	9.357	1.406	1.734	0.449	0.500	4.418	4.007	3.264	2.140	1.554	2.418	0.737	0.003	0.261	0.916		0.142	3.300
11348	chr5	73621102	73623184	+	0	NA	intron (NM_153568, intron 2 of 4)	B4A|SINE|B4	10278	NM_153568	231296	Mm.168948	NM_153568	ENSMUSG00000067206	Lrrc66	-	leucine rich repeat containing 66	protein-coding	3.282	1.451	0.671	3.039	1.719	0.714	3.110	1.846	2.072	2.599	1.134	1.115	1.607	5.147	2.804	3.112	2.241	3.499	1.144	1.566	0.507	1.365	1.241	0.430	4.159
12600	chr6	113645057	113649281	+	0	NA	intron (NM_001113553, intron 1 of 11)	intron (NM_001113553, intron 1 of 11)	8702	NM_001113553	108960	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	9.037	9.133	4.272	7.703	7.679	4.654	11.695	10.313	5.971	10.165	5.594	4.675	9.154	11.214	9.857	12.560	9.806	7.862	2.913	2.641	2.377	2.873	nan	2.545	10.422
5522	chr15	85185140	85191821	+	0	NA	Intergenic	L1ME4c|LINE|L1	-17469	NM_001347088	14114	Mm.297992	NM_010180	ENSMUSG00000006369	Fbln1	-	fibulin 1	protein-coding	7.146	0.741	0.530	4.285	6.406	4.573	7.003	10.938	nan	4.531	1.885	1.187	9.751	9.183	nan	nan	8.965	nan	nan	0.800	0.697	nan	0.520	0.510	5.151
11771	chr5	134702357	134723881	+	0	NA	intron (NM_007925, intron 24 of 36)	ZP3AR|Satellite|Satellite	-24529	NM_010717	16885	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	5.068	6.587	3.107	5.466	5.077	3.952	4.862	5.078	4.869	5.806	2.866	1.610	5.980	8.998	6.300	6.517	4.084	5.941	1.302	1.318	1.636	1.149	nan	0.608	5.397
15213	chr9	65678168	65680785	+	0	NA	intron (NM_001301307, intron 1 of 4)	intron (NM_001301307, intron 1 of 4)	2928	NM_001301307	18247	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	4.719	0.942	0.356	3.207	2.843	0.956	3.870	4.081	4.584	3.553	2.352	1.671	5.116	4.732	5.311	5.926	3.216	5.580	nan	0.628	0.483	1.177	1.185	0.797	4.490
14457	chr8	92891553	92897218	+	0	NA	intron (NM_173014, intron 11 of 13)	MT2B|LTR|ERVL	-7010	NM_027112	69543	Mm.440514	NM_027112	ENSMUSG00000078144	Capns2	2310005G05Rik|30K-2	calpain, small subunit 2	protein-coding	0.678	0.377	0.294	0.589	0.248	0.110	0.718	4.702	nan	0.527	0.124	1.197	2.905	1.056	2.189	1.368	1.001	1.102	nan	5.418	2.643	9.028	5.571	3.916	0.448
12857	chr6	146590716	146592638	+	0	NA	intron (NM_001347513, intron 4 of 5)	intron (NM_001347513, intron 4 of 5)	13766	NM_026218	67529	Mm.333499	NM_026218	ENSMUSG00000040242	Fgfr1op2	1500031J01Rik	FGFR1 oncogene partner 2	protein-coding	6.882	8.910	2.376	nan	5.331	3.187	9.158	9.490	4.948	6.953	5.342	3.243	nan	9.946	9.685	13.603	8.027	9.498	3.974	nan	3.684	nan	4.017	4.021	nan
9958	chr4	19782171	19791075	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-32104	NM_028746	74087	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	4.772	0.528	0.445	3.670	3.535	1.469	4.121	2.791	5.138	4.759	2.518	0.996	6.046	6.369	4.849	6.089	4.034	6.918	0.631	0.597	0.386	0.508	0.351	0.255	4.192
12395	chr6	86796795	86801854	+	0	NA	Intergenic	Intergenic	-5740	NM_013471	11746	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	7.391	8.233	3.101	7.195	5.359	3.808	9.009	8.250	4.447	6.823	4.612	2.871	6.509	9.533	8.458	9.770	7.125	nan	nan	2.646	2.863	4.119	3.868	3.265	8.777
860	chr1	171623311	171625090	+	0	NA	Intergenic	ORR1A4|LTR|ERVL-MaLR	-16790	NM_008534	17085	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	9.252	0.526	0.636	1.765	2.656	1.797	4.928	2.555	3.161	3.285	0.723	0.629	4.385	2.928	nan	5.288	4.944	5.159	0.794	0.815	0.413	nan	nan	0.317	3.299
11922	chr5	144285101	144290342	+	0	NA	intron (NM_025833, intron 3 of 13)	intron (NM_025833, intron 3 of 13)	10660	NR_040432	100504231	Mm.441035	NR_040432	ENSMUSG00000086894	Gm15708	OTTMUSG00000025583	predicted gene 15708	ncRNA	8.519	8.881	2.736	10.139	6.403	5.181	5.506	6.405	6.294	10.297	6.859	3.954	5.916	7.911	7.417	7.985	5.066	8.755	3.402	2.166	2.221	4.178	2.638	3.438	8.743
2308	chr11	62061276	62064537	+	0	NA	intron (NM_001310526, intron 3 of 7)	intron (NM_001310526, intron 3 of 7)	-14118	NM_001029936	432572	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	4.994	1.466	0.568	9.384	3.889	2.149	1.646	1.502	6.169	10.226	4.649	2.448	5.751	7.090	5.819	10.633	4.985	9.108	nan	0.928	0.836	1.215	1.929	2.214	nan
4887	chr14	79533873	79540808	+	0	NA	intron (NM_001286411, intron 2 of 8)	intron (NM_001286411, intron 2 of 8)	21666	NM_001286411	13709	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	4.849	0.968	0.621	5.331	3.398	1.577	5.254	3.630	7.216	8.479	1.139	0.886	7.031	9.678	7.257	7.081	3.820	9.553	1.874	0.710	0.376	1.753	1.224	0.934	5.749
1567	chr10	86558909	86568158	+	0	NA	Intergenic	L1Md_T|LINE|L1	-64637	NM_013722	27204	Mm.394931	NM_013722	ENSMUSG00000059602	Syn3	-	synapsin III	protein-coding	nan	1.026	0.838	0.337	0.198	0.107	0.220	0.258	0.295	0.247	0.163	0.151	0.144	nan	0.189	0.405	0.458	nan	4.276	3.091	2.109	nan	nan	1.758	0.302
1063	chr1	196445156	196458080	+	0	NA	Intergenic	Intergenic	-1274903	NM_007758	12902	Mm.235387	NM_007758	ENSMUSG00000026616	Cr2	C3DR|CD21|CD35|Cr-1|Cr-2|Cr1	complement receptor 2	protein-coding	5.606	1.327	0.488	5.467	3.464	1.747	4.258	5.281	3.890	5.544	1.777	1.510	6.108	6.339	5.296	9.024	3.880	6.409	6.795	3.089	1.774	6.869	nan	4.109	nan
7113	chr18	34444971	34446930	+	0	NA	intron (NM_146084, intron 17 of 20)	Lx7|LINE|L1	36527	NM_016927	53871	Mm.445792	NM_016927	ENSMUSG00000014503	Pkd2l2	TRPP5	polycystic kidney disease 2-like 2	protein-coding	6.011	0.735	0.770	1.822	2.159	1.014	6.051	6.428	3.353	3.856	0.765	1.036	5.888	5.068	4.460	4.534	6.225	3.952	2.500	4.772	3.615	6.246	1.482	1.517	5.865
15732	chrX	54022304	54027782	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-227337	NM_011725	22441	Mm.379041	NM_011725	ENSMUSG00000054626	Xlr	-	X-linked lymphocyte-regulated	protein-coding	3.505	0.303	0.170	2.995	2.680	1.115	2.228	4.385	4.034	5.216	0.620	0.717	5.144	5.893	3.892	3.907	2.697	4.963	0.634	0.520	0.191	0.713	0.440	0.298	2.200
1776	chr10	117173998	117176482	+	0	NA	Intergenic	Intergenic	-26766	NM_177798	327826	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	3.312	0.728	0.727	0.717	1.045	0.803	3.725	7.092	1.864	1.273	0.480	0.715	3.810	4.711	2.137	2.809	2.356	1.951	0.543	0.421	0.478	0.364	0.584	0.473	2.125
7670	chr19	25169138	25172480	+	0	NA	intron (NM_028785, intron 34 of 47)	MER2|DNA|TcMar-Tigger	-66393	NM_181404	107351	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	nan	1.029	0.622	1.957	0.559	0.318	4.953	7.019	1.917	3.128	nan	0.363	6.623	7.324	1.860	2.240	2.673	4.684	nan	0.142	0.257	0.377	nan	0.224	2.915
2565	chr11	85602878	85607090	+	0	NA	intron (NM_138681, intron 24 of 25)	ID_B1|SINE|B4	114760	NR_045875	71489	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	4.524	1.055	0.410	4.015	1.940	1.148	4.884	3.665	4.195	4.623	7.579	3.688	3.965	5.303	4.801	6.571	4.579	5.768	0.657	0.361	0.582	nan	0.411	0.366	5.567
12827	chr6	142308064	142309932	+	0	NA	intron (NM_130861, intron 1 of 14)	MamTip2|DNA|hAT-Tip100	10573	NM_010491	15874	Mm.415	NM_010491	ENSMUSG00000041681	Iapp	DAP	islet amyloid polypeptide	protein-coding	1.493	0.641	0.386	2.438	0.696	0.509	2.146	0.968	3.336	2.644	0.432	0.457	3.682	4.659	4.699	6.674	5.167	2.811	nan	0.385	0.323	0.689	0.368	0.140	3.649
3047	chr11	117793343	117797638	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-2170	NM_029964	77727	Mm.159981	NM_029964	ENSMUSG00000025573	6030468B19Rik	-	RIKEN cDNA 6030468B19 gene	protein-coding	6.798	1.999	0.591	7.460	6.555	3.974	5.137	6.962	5.352	7.390	3.427	2.604	6.433	9.701	5.307	6.735	3.952	6.290	3.503	nan	2.673	5.689	3.842	3.221	5.130
2158	chr11	51208392	51213137	+	0	NA	intron (NR_110444, intron 3 of 4)	RMER12|LTR|ERVK	9654	NR_110444	71297	Mm.390420	NR_110444	ENSMUSG00000086646	Platr20	5133400J02Rik	pluripotency associated transcript 20	ncRNA	4.840	0.477	0.285	4.510	3.671	1.963	1.352	1.859	5.152	6.986	2.772	1.103	6.752	8.823	3.697	3.780	6.984	nan	nan	1.809	0.972	nan	nan	0.917	3.658
3829	chr13	5872337	5875358	+	0	NA	Intergenic	Intergenic	12358	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	3.583	0.985	0.627	3.761	2.538	1.253	1.417	3.253	2.915	2.812	2.593	1.674	2.650	3.714	2.868	3.351	1.810	3.901	0.971	0.559	0.264	0.684	0.386	0.380	1.629
2362	chr11	68934608	68937705	+	0	NA	Intergenic	Intergenic	-9075	NM_145746	252868	Mm.76826	NM_145746	ENSMUSG00000032921	Odf4	Oppo1	outer dense fiber of sperm tails 4	protein-coding	7.537	7.894	3.969	7.472	5.697	4.270	4.423	6.319	4.280	9.248	5.274	3.451	4.626	8.518	5.980	7.490	6.950	5.725	4.006	4.399	4.046	4.126	5.029	4.681	8.593
7084	chr18	25697495	25700072	+	0	NA	intron (NM_001146292, intron 1 of 12)	intron (NM_001146292, intron 1 of 12)	55200	NM_133195	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	2.783	0.559	0.217	0.699	0.683	0.320	6.182	10.394	2.590	1.739	10.723	3.424	4.098	2.175	2.695	2.627	2.594	3.763	nan	0.447	0.686	nan	0.612	0.754	3.741
8659	chr2	128793206	128794171	+	0	NA	intron (NM_008587, intron 17 of 18)	B3|SINE|B2	-24615	NM_028248	72477	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	16.768	28.159	8.944	25.132	6.201	6.799	16.260	15.471	12.656	39.567	16.635	6.772	17.651	18.189	15.908	19.594	13.492	18.768	10.711	3.000	5.313	12.820	5.570	12.156	32.284
2796	chr11	100861108	100875084	+	0	NA	intron (NM_001164062, intron 5 of 17)	L1MC5|LINE|L1	7612	NM_001164062	20850	Mm.277403	NM_011488	ENSMUSG00000004043	Stat5a	AA959963|STAT5	signal transducer and activator of transcription 5A	protein-coding	6.702	nan	1.411	4.586	6.449	5.076	8.386	6.875	5.528	5.724	3.461	2.510	8.197	9.405	6.676	7.105	nan	5.884	2.077	nan	1.543	1.830	nan	nan	4.768
15092	chr9	54982468	54988954	+	0	NA	intron (NM_176844, intron 1 of 5)	Lx7|LINE|L1	4831	NM_176844	110835	Mm.103778	NM_176844	ENSMUSG00000035594	Chrna5	Acra-5|Acra5	cholinergic receptor, nicotinic, alpha polypeptide 5	protein-coding	2.403	0.648	0.462	1.214	0.921	0.529	2.912	5.829	1.767	1.638	3.181	2.274	2.436	2.281	2.745	2.584	1.731	2.025	0.659	0.786	0.450	0.733	0.482	0.678	2.376
15598	chr9	120774607	120779528	+	0	NA	Intergenic	Intergenic	138183	NR_040742	76402	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	4.437	2.052	0.727	2.882	2.470	1.360	5.064	5.200	3.332	3.823	2.581	1.781	4.816	6.574	4.963	5.470	2.727	3.300	0.795	1.000	0.833	1.384	nan	1.525	4.607
11411	chr5	91050636	91051902	+	0	NA	Intergenic	L1_Mus1|LINE|L1	-23348	NM_007950	13874	Mm.4791	NM_007950	ENSMUSG00000029377	Ereg	EPR	epiregulin	protein-coding	2.596	2.114	1.478	0.451	0.249	0.146	4.659	4.603	3.069	1.742	2.212	2.697	5.272	3.629	2.254	3.106	1.137	2.404	0.455	0.214	0.285	0.689	0.487	0.155	0.808
7076	chr18	24029493	24037028	+	0	NA	Intergenic	IAPLTR2_Mm|LTR|ERVK	-12489	NM_021559	59057	Mm.417427	NM_021559	ENSMUSG00000051469	Zfp24	3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf191|Znf24|Znp191	zinc finger protein 24	protein-coding	4.368	1.605	0.857	3.386	2.364	1.408	3.219	7.941	2.152	2.738	0.595	0.791	4.689	3.997	2.939	4.685	3.885	4.289	nan	1.432	0.943	nan	1.969	1.429	3.070
8932	chr2	162755637	162758215	+	0	NA	Intergenic	Intergenic	95763	NR_033569	77288	Mm.376571	NR_033569		9430021M05Rik	-	RIKEN cDNA 9430021M05 gene	ncRNA	6.485	12.455	3.644	10.692	4.414	3.470	6.685	8.103	nan	11.736	5.781	3.076	7.909	7.834	9.943	11.354	5.741	8.146	6.218	2.099	3.111	7.362	3.613	6.027	15.323
5041	chr15	10612068	10613473	+	0	NA	intron (NM_001166408, intron 3 of 17)	intron (NM_001166408, intron 3 of 17)	12477	NR_033541	100038608	Mm.450744	NR_033541		Gm10389	ENSMUSG00000072658	predicted gene 10389	ncRNA	3.985	1.486	1.381	0.914	1.827	1.605	1.887	5.269	3.416	2.806	2.578	1.421	2.009	3.117	2.194	2.712	3.262	1.845	0.625	0.985	0.459	0.382	0.491	0.193	2.557
7507	chr19	6545749	6549805	+	0	NA	Intergenic	MIRb|SINE|MIR	-4707	NM_009203	20521	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	1.052	1.515	0.553	0.936	0.644	0.244	1.884	4.671	nan	0.821	0.381	0.407	0.712	1.908	1.870	1.946	0.730	1.293	1.073	0.957	0.512	1.999	1.463	0.947	1.290
12534	chr6	99160649	99163330	+	0	NA	intron (NM_001347345, intron 5 of 19)	intron (NM_001347345, intron 5 of 19)	104526	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	3.633	1.248	0.680	1.942	3.188	2.710	4.811	6.143	2.520	2.731	1.371	1.204	3.161	5.440	5.710	6.076	4.034	2.710	nan	nan	0.633	0.977	1.003	0.708	2.894
2142	chr11	49508643	49511391	+	0	NA	Intergenic	Intergenic	-3601	NM_146472	258464	Mm.271389	NM_146472	ENSMUSG00000044170	Olfr1384	MOR256-23	olfactory receptor 1384	protein-coding	2.000	7.492	6.866	1.723	2.721	1.479	1.197	2.298	2.009	1.545	1.215	1.513	0.812	1.860	1.052	nan	1.331	nan	nan	1.468	0.626	nan	nan	1.278	0.988
1834	chr10	126516361	126519573	+	0	NA	Intergenic	Intergenic	192424	NR_105841	102465224		NR_105841	ENSMUSG00000098756	Mir378d	Gm27650|mmu-mir-378d	microRNA 378d	ncRNA	0.590	nan	0.448	1.129	0.324	0.319	0.668	0.518	0.751	1.163	0.198	0.326	0.336	0.652	0.767	0.741	0.382	0.837	1.700	0.496	0.873	3.126	nan	1.600	1.168
545	chr1	127473227	127475384	+	0	NA	intron (NM_145128, intron 16 of 17)	intron (NM_145128, intron 16 of 17)	203716	NM_028135	72160	Mm.281287	NM_028135	ENSMUSG00000026347	Tmem163	2610024A01Rik|SV31	transmembrane protein 163	protein-coding	2.355	nan	0.623	3.459	1.070	0.442	0.830	1.023	2.225	0.960	1.490	1.714	1.310	1.100	1.133	1.764	1.141	2.435	nan	0.404	0.108	0.430	0.797	0.523	0.805
2733	chr11	97689265	97695524	+	0	NA	exon (NM_009545, exon 8 of 13)	exon (NM_009545, exon 8 of 13)	6442	NM_001085500	217149	Mm.29659	NM_001085500	ENSMUSG00000078695	Cisd3	Mel-13|Mel13	CDGSH iron sulfur domain 3	protein-coding	3.782	nan	1.188	4.723	3.269	2.645	2.668	3.409	2.627	2.457	2.653	1.977	2.942	5.202	3.614	3.321	nan	4.131	0.977	nan	1.241	1.152	nan	nan	2.935
10503	chr4	124423366	124432542	+	0	NA	Intergenic	L1ME4a|LINE|L1	58005	NR_040774	78460	Mm.452060	NR_040774		1700057H15Rik	-	RIKEN cDNA 1700057H15 gene	ncRNA	5.535	3.925	1.987	3.724	3.644	2.088	5.220	5.557	3.242	5.181	1.431	0.978	5.495	7.926	nan	5.829	4.174	4.345	2.233	2.243	1.984	2.750	2.597	1.981	5.598
10478	chr4	122567410	122569488	+	0	NA	Intergenic	Intergenic	-120810	NM_023865	77432	Mm.491436	NM_023865	ENSMUSG00000023263	9530002B09Rik	Aump|Vpp1|Vppl	RIKEN cDNA 9530002B09 gene	protein-coding	3.135	2.667	2.941	1.654	2.049	1.950	1.502	0.895	1.654	1.974	2.338	1.092	0.636	1.468	1.285	1.307	1.193	1.965	2.149	7.823	7.418	2.949	1.075	0.946	2.039
7310	chr18	62252861	62262574	+	0	NA	Intergenic	Lx8b|LINE|L1	-66487	NM_008313	15562	Mm.20440	NM_008313	ENSMUSG00000026322	Htr4	5-HT-4|5-HT4|5-HT<4L>|5HTR4	5 hydroxytryptamine (serotonin) receptor 4	protein-coding	5.147	nan	0.449	5.389	4.069	2.704	3.468	5.976	4.422	5.010	2.158	0.865	nan	6.273	4.092	4.769	3.585	6.773	nan	0.591	0.596	nan	0.441	0.431	nan
14403	chr8	86496017	86499173	+	0	NA	Intergenic	L1MB4|LINE|L1	68995	NM_172912	244562	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding	4.683	3.574	1.398	5.051	3.439	2.321	3.494	5.018	nan	8.065	2.335	1.544	3.736	6.541	4.966	8.116	4.098	5.246	nan	2.432	2.631	3.672	2.817	3.056	10.752
14617	chr8	114136423	114150368	+	0	NA	intron (NM_001290181, intron 2 of 3)	MLT1A0|LTR|ERVL-MaLR	9821	NM_024437	67528	Mm.27889	NM_024437	ENSMUSG00000031767	Nudt7	1300007B24Rik|2210404C19Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 7	protein-coding	4.711	1.510	1.119	4.077	3.656	2.564	3.642	5.623	3.231	3.819	2.048	2.478	5.604	6.179	5.123	nan	5.876	4.944	2.475	3.329	3.240	5.770	1.568	1.368	6.497
10872	chr4	147458026	147459532	+	0	NA	intron (NM_001039209, intron 1 of 2)	Lx6|LINE|L1	-94498	NM_001014397	433804	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154|OTTMUSG00000010673	zinc finger protein 985	protein-coding	6.044	1.621	0.789	4.908	4.684	5.880	2.046	2.465	1.842	1.374	0.635	0.907	2.017	2.999	1.833	2.089	1.062	2.603	3.615	3.800	5.136	3.445	10.439	13.287	4.471
4625	chr14	46018819	46020044	+	0	NA	Intergenic	Intergenic	-64596	NR_002875	218963	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo	1.376	0.463	0.347	0.951	0.515	0.375	0.607	1.274	0.973	0.855	0.248	0.122	0.416	2.683	0.816	0.977	0.858	1.284	0.646	0.281	0.800	0.265	0.215	0.544	1.192
10352	chr4	106697884	106700454	+	0	NA	intron (NM_001126487, intron 15 of 23)	intron (NM_001126487, intron 15 of 23)	-20225	NM_028209	72354	Mm.25806	NM_028209	ENSMUSG00000025413	Ttc4	2810002P21Rik|AF007005|L62	tetratricopeptide repeat domain 4	protein-coding	1.020	0.847	0.445	0.755	1.320	0.560	1.840	2.733	1.957	1.512	1.594	0.835	2.451	1.702	1.490	1.235	1.025	1.860	3.152	3.575	2.200	4.578	2.537	1.474	1.087
2326	chr11	63840190	63841740	+	0	NA	Intergenic	B4A|SINE|B4	81319	NM_018805	54710	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	1.695	0.879	0.401	3.146	3.926	2.285	2.954	3.818	3.237	3.048	1.330	0.877	2.264	4.556	2.205	2.868	3.145	3.727	0.787	0.741	0.654	0.571	nan	0.606	nan
12187	chr6	39325652	39327726	+	0	NA	Intergenic	PB1D9|SINE|Alu	51018	NM_028123	72144	Mm.482167	NM_028123	ENSMUSG00000029924	Slc37a3	2610507O21Rik|AU044904	solute carrier family 37 (glycerol-3-phosphate transporter), member 3	protein-coding	7.160	6.799	2.763	5.571	4.529	3.759	14.554	10.551	4.910	7.580	4.215	2.998	8.236	8.176	9.272	9.206	6.595	6.411	4.274	3.961	4.960	nan	nan	3.639	7.882
7166	chr18	37965487	37969099	+	0	NA	intron (NM_175684, intron 7 of 19)	intron (NM_175684, intron 7 of 19)	2438	NM_175684	319262	Mm.285060	NM_175684	ENSMUSG00000038524	Fchsd1	A030002D08Rik	FCH and double SH3 domains 1	protein-coding	5.017	5.082	1.298	7.049	1.422	0.678	3.869	6.063	3.530	3.997	2.596	1.556	6.071	5.614	7.698	8.763	4.202	6.521	2.244	1.158	0.663	3.760	1.196	1.514	14.763
6419	chr17	26179737	26184562	+	0	NA	intron (NM_001159598, intron 3 of 9)	intron (NM_001159598, intron 3 of 9)	16938	NM_001081070	69191	Mm.32631	NM_001081070	ENSMUSG00000024184	Pdia2	1810041F13Rik|AI661267|Pdip|Pdipl	protein disulfide isomerase associated 2	protein-coding	3.723	1.180	0.773	2.249	2.159	1.666	4.253	4.107	2.591	3.225	0.863	1.136	4.002	4.651	5.069	5.640	4.678	3.752	1.544	1.205	1.188	2.911	1.144	0.870	5.657
3089	chr11	119774693	119778484	+	0	NA	intron (NM_028898, intron 6 of 33)	PB1D7|SINE|Alu	57777	NR_045313	319454	Mm.442144	NR_045312	ENSMUSG00000085081	Rptoros	A430071A18Rik	regulatory associated protein of MTOR, complex 1, opposite strand	ncRNA	9.243	6.694	1.553	10.689	3.603	2.108	10.483	9.835	5.558	9.738	7.866	4.205	9.773	12.273	11.348	12.572	6.653	10.500	3.513	nan	1.812	5.712	1.584	1.526	15.267
7108	chr18	34048043	34051692	+	0	NA	Intergenic	Intergenic	-42661	NM_013512	13824	Mm.3465	NM_013512	ENSMUSG00000024376	Epb41l4a	Epb4.1l4|Epb4.1l4a|NBL4	erythrocyte membrane protein band 4.1 like 4a	protein-coding	4.184	0.505	0.417	2.909	2.834	1.573	3.539	4.134	2.885	3.502	7.842	2.354	4.560	4.311	2.170	nan	1.901	4.512	0.749	0.706	0.741	0.884	0.496	0.503	2.115
13700	chr7	126137024	126139071	+	0	NA	intron (NM_001311143, intron 9 of 23)	intron (NM_001311143, intron 9 of 23)	-55636	NM_001101488	269994	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	3.264	2.762	0.630	6.622	2.620	1.638	5.478	9.683	3.478	6.218	8.939	3.829	3.706	6.121	6.377	7.210	3.016	5.949	2.828	1.508	1.487	2.684	2.493	2.351	13.302
2436	chr11	72860819	72862927	+	0	NA	intron (NM_001045536, intron 18 of 54)	intron (NM_001045536, intron 18 of 54)	65647	NM_001045536	195018	Mm.272030	NM_001045536	ENSMUSG00000055670	Zzef1	8430405D05Rik|BC051585|C130099L13Rik|C85424|NSPA|mKIAA0399	zinc finger, ZZ-type with EF hand domain 1	protein-coding	6.226	8.723	2.754	7.407	4.749	3.338	6.545	6.518	4.953	9.447	6.175	2.901	5.636	8.331	6.911	7.997	6.427	7.073	4.462	3.980	4.171	6.635	5.043	4.567	9.412
8424	chr2	90381681	90383508	+	0	NA	Intergenic	BGLII|LTR|ERVK	-18046	NM_146263	258330	Mm.330392	NM_146263	ENSMUSG00000082980	Olfr1274-ps	GA_x5J8B7W2BV0-3116-4045|MOR228-4|MOR228-5|Olfr1274	olfactory receptor 1274, pseudogene	protein-coding	4.704	1.736	0.491	3.197	2.527	1.031	1.342	6.719	3.413	3.374	3.799	2.338	3.190	4.556	3.050	2.823	1.941	3.832	1.214	0.836	0.604	1.006	0.574	0.222	3.865
6766	chr17	57366593	57370247	+	0	NA	intron (NM_010130, intron 2 of 21)	L1Md_T|LINE|L1	9734	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	3.866	3.289	1.967	4.873	5.654	4.079	4.059	6.076	3.416	3.747	2.770	2.284	2.258	4.059	4.721	5.560	4.719	4.617	0.810	1.379	1.033	0.545	0.699	0.676	3.861
14793	chr8	128264423	128266777	+	0	NA	Intergenic	Intergenic	12625	NR_105822	102465212		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	5.270	nan	0.258	nan	1.675	0.813	5.182	4.932	3.432	4.074	1.139	1.074	6.418	6.448	5.952	9.508	4.897	5.671	nan	0.717	0.630	nan	0.735	nan	10.441
9571	chr3	97029328	97031559	+	0	NA	Intergenic	Intergenic	-1959	NM_001271628	14613	Mm.281816	NM_008121	ENSMUSG00000057123	Gja5	5730555N10Rik|Cnx40|Cx40|Gja-5	gap junction protein, alpha 5	protein-coding	4.591	3.571	1.610	4.176	3.683	1.917	4.190	4.580	2.413	4.769	nan	1.381	2.886	5.604	3.060	4.508	5.372	4.263	2.470	2.600	1.180	2.346	3.128	2.704	5.235
6390	chr17	24345661	24351248	+	0	NA	Intergenic	B4A|SINE|B4	-1202	NM_001031621	381072	Mm.328842	NM_001031621	ENSMUSG00000035435	Abca17	-	ATP-binding cassette, sub-family A (ABC1), member 17	protein-coding	2.652	1.432	0.327	2.363	1.918	1.491	5.349	1.822	1.249	1.869	0.544	0.332	3.694	9.105	3.694	nan	2.218	1.794	1.285	1.276	1.274	3.038	1.108	1.368	2.359
4019	chr13	41467547	41473055	+	0	NA	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	17059	NM_001111324	18003	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	1.521	8.453	4.265	1.834	0.826	0.323	nan	nan	nan	nan	0.735	0.659	0.537	0.797	1.273	nan	0.845	nan	0.888	0.823	0.451	0.967	0.390	0.399	nan
6245	chr16	94670699	94676192	+	0	NA	exon (NM_001113389, exon 8 of 12)	exon (NM_001113389, exon 8 of 12)	62026	NM_001347731	13548	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|ENSMUSG00000074897|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	4.230	1.188	0.647	2.058	1.226	0.819	4.684	6.836	nan	1.499	1.195	0.647	6.429	5.392	5.475	7.135	3.923	4.877	nan	0.670	0.506	0.674	0.541	0.471	3.823
14668	chr8	122220594	122221717	+	0	NA	Intergenic	Intergenic	-60986	NM_009569	22761	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	2.591	0.541	0.143	3.598	2.312	1.260	3.160	8.255	2.573	3.407	2.344	3.646	4.953	4.640	5.668	6.223	2.587	5.071	1.008	0.193	0.146	1.361	0.966		2.899
5416	chr15	78857930	78861741	+	0	NA	Intergenic	Intergenic	-4306	NM_025622	107753	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	7.945	7.159	1.647	9.825	3.249	2.184	nan	12.801	5.476	10.497	7.173	3.815	9.930	10.292	9.706	9.999	nan	10.295	5.321	3.056	2.863	6.479	4.860	3.962	14.668
7354	chr18	68216813	68222408	+	0	NA	intron (NM_172631, intron 3 of 5)	Lx5b|LINE|L1	41363	NR_106078	102465702		NR_106078	ENSMUSG00000098253	Mir7219	Gm27613|mmu-mir-7219	microRNA 7219	ncRNA	8.831	1.221	1.044	4.689	6.530	3.289	6.273	10.322	5.009	6.546	3.440	2.721	7.559	5.700	4.375	6.239	6.702	4.932	6.311	4.491	3.377	4.474	6.803	4.863	4.744
11066	chr5	23854667	23859203	+	0	NA	intron (NR_037304, intron 3 of 4)	MERVK26-int|LTR|ERVK	4702	NR_028536	100217436		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	0.620	1.315	0.319	nan	0.329		0.511	0.870	0.630	1.200	0.240	0.178	0.492	0.692	1.140	1.094	0.561	1.135	6.518	2.340	2.016	6.172	6.509	4.595	1.288
10856	chr4	144620875	144625928	+	0	NA	TTS (NM_001081248)	TTS (NM_001081248)	9694	NM_001081248	435815	Mm.439623	NM_001081248	ENSMUSG00000070609	Gm13177	OTTMUSG00000010747	predicted gene 13177	protein-coding	2.513	nan	0.990	3.625	2.033	1.074	3.607	4.515	4.967	6.016	2.802	2.065	3.646	4.534	3.797	4.376	2.486	4.392	3.079	1.321	0.546	2.255	3.411	2.068	2.903
15820	chrX	137053038	137057726	+	0	NA	intron (NM_146261, intron 1 of 5)	intron (NM_146261, intron 1 of 5)	5788	NM_146261	245622	Mm.260106	NM_146261	ENSMUSG00000042595	Fam199x	-	family with sequence similarity 199, X-linked	protein-coding	6.035	2.999	1.544	5.180	3.797	2.976	2.601	5.186	3.893	5.048	4.375	1.879	4.272	6.300	2.889	5.302	3.588	4.629	1.893	1.828	1.764	2.604	1.940	1.507	3.628
11110	chr5	31350212	31352551	+	0	NA	Intergenic	Intergenic	53800	NM_144909	231103	Mm.100043	NM_144909	ENSMUSG00000059434	Gckr	GKRP	glucokinase regulatory protein	protein-coding	7.965	9.627	4.842	8.878	4.709	2.033	8.022	7.483	6.090	9.026	6.054	4.257	6.292	10.646	10.076	9.828	7.919	7.535	6.062	4.239	3.296	5.068	5.616	6.622	10.609
2882	chr11	105818536	105821566	+	0	NA	intron (NM_181071, intron 8 of 25)	intron (NM_181071, intron 8 of 25)	124096	NM_007805	13056	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	5.032	2.711	0.950	6.073	3.901	3.793	3.197	3.493	3.699	3.812	2.183	2.393	3.232	4.327	2.807	2.746	2.435	3.950	3.190	2.477	3.112	5.493	2.698	2.252	3.408
1662	chr10	95955986	95957781	+	0	NA	intron (NM_001001932, intron 1 of 28)	(TG)n|Simple_repeat|Simple_repeat	16220	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	3.294	1.403	0.706	3.206	0.684	0.299	2.182	1.149	5.347	5.640	nan	0.684	4.790	4.030	4.977	6.125	4.917	3.908	nan	0.664	0.340	nan	0.277	0.243	4.244
14326	chr8	74060481	74064388	+	0	NA	Intergenic	Lx|LINE|L1	-708894	NM_010687	16795	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	4.951	8.092	3.510	6.214	6.080	5.260	nan	4.283	nan	3.836	2.407	1.706	3.597	4.085	4.638	nan	4.300	5.155	2.521	2.264	2.931	nan	2.469	2.362	nan
10931	chr4	150120416	150122337	+	0	NA	intron (NM_019741, intron 3 of 13)	B1_Mus1|SINE|Alu	2032	NM_019741	56485	Mm.260220	NM_019741	ENSMUSG00000028976	Slc2a5	AI526984|Glut5|Slc5a	solute carrier family 2 (facilitated glucose transporter), member 5	protein-coding	7.896	nan	0.979	5.184	7.897	6.976	6.699	8.461	6.431	5.190	6.112	7.156	4.816	6.175	6.310	4.541	4.659	4.742	5.155	3.885	3.353	5.074	4.530	5.471	6.287
9297	chr3	51998032	52003873	+	0	NA	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	104054	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding	3.752	4.392	1.570	4.048	2.734	1.278	5.035	4.254	2.835	3.091	4.210	1.932	4.206	5.252	5.605	5.849	2.705	4.414	3.609	1.776	1.377	3.912	2.036	1.727	5.469
574	chr1	129897725	129899184	+	0	NA	intron (NM_172485, intron 12 of 27)	intron (NM_172485, intron 12 of 27)	524589	NM_007827	13137	Mm.436759	NM_007827	ENSMUSG00000026401	Cd55b	AI323748|Daf|Daf-TM|Daf2|TM-DAF	CD55 molecule, decay accelerating factor for complement B	protein-coding	3.722	nan	0.617	1.366	0.707	0.716	0.941	0.863	2.174	2.129	1.159	0.229	4.007	3.611	1.568	4.719	5.512	2.801	nan	0.570	0.336	0.368	0.746	0.328	4.058
14951	chr9	32545416	32549953	+	0	NA	Intergenic	Intergenic	-6232	NM_008026	14247	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	1.476	7.002	3.096	1.945	0.544	0.245	0.759	0.906	1.629	1.335	0.570	1.332	0.522	0.825	1.129	nan	0.809	1.890	0.957	0.981	0.344	0.889	0.591	0.213	1.182
7874	chr19	53573795	53578068	+	0	NA	Intergenic	PB1D7|SINE|Alu	-24465	NM_007790	13006	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	3.314	1.999	0.953	1.305	0.862	0.621	6.286	6.595	2.023	2.591	0.696	0.860	3.381	4.054	4.758	5.252	3.687	4.634	2.400	4.417	4.056	6.187	4.398	4.632	7.500
15123	chr9	57507817	57510762	+	0	NA	Intergenic	ORR1A0-int|LTR|ERVL-MaLR	5187	NM_133982	102614	Mm.274421	NM_133982	ENSMUSG00000062309	Rpp25	AI851155	ribonuclease P/MRP 25 subunit	protein-coding	1.572	0.847	0.474	1.163	0.959	0.949	0.989	1.897	1.333	0.859	0.559	0.498	0.823	1.428	1.304	0.993	1.152	1.342	4.983	4.235	5.488	4.960	5.973	7.180	1.263
8551	chr2	118315082	118317628	+	0	NA	intron (NM_201367, intron 1 of 2)	MLT1D|LTR|ERVL-MaLR	11441	NR_045919	73358	Mm.437192	NR_045919	ENSMUSG00000085889	1700054M17Rik	-	RIKEN cDNA 1700054M17 gene	ncRNA	12.414	7.967	3.266	6.597	8.063	5.843	11.489	10.392	6.568	9.621	3.115	1.601	10.353	12.827	8.902	12.130	10.249	10.170	6.215	4.122	6.108	4.601	7.287	7.369	14.418
3397	chr12	71346323	71350225	+	0	NA	Intergenic	Intergenic	35934	NR_136902	67348	Mm.54261	NR_136902	ENSMUSG00000100668	1700083H02Rik	100041190|Gm3190	RIKEN cDNA 1700083H02 gene	ncRNA	4.911	0.848	0.420	1.989	1.311	0.314	1.218	1.529	1.993	2.512	0.550	0.365	3.652	4.205	3.046	5.139	5.928	4.154	0.997	0.658	0.251	1.182	1.072	0.676	8.506
660	chr1	136452205	136453984	+	0	NA	Intergenic	Intergenic	-14754	NM_001287179	381293	Mm.458468	NM_001081258	ENSMUSG00000041498	Kif14	D1Ertd367e|E130203M01	kinesin family member 14	protein-coding	6.967	5.445	1.192	4.670	1.819	1.285	6.754	6.683	1.693	4.890	5.265	2.603	6.017	5.187	6.669	11.541	5.631	5.041	2.971	1.143	1.695	4.229	1.286	1.501	8.649
14748	chr8	125776823	125779230	+	0	NA	intron (NM_175561, intron 25 of 33)	RLTR26B_MM|LTR|ERVK	43823	NM_001310688	66566	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	7.849	9.960	2.753	9.330	3.060	1.992	5.071	7.506	5.057	11.698	5.397	3.274	6.883	7.355	9.541	11.307	4.540	9.409	3.470	1.263	3.436	6.979	2.610	nan	16.842
6985	chr18	4634966	4637079	+	0	NA	intron (NM_001081963, intron 1 of 3)	intron (NM_001081963, intron 1 of 3)	1093	NM_001081963	240185	Mm.33179	NM_001081963	ENSMUSG00000033960	9430020K01Rik	1110056P05Rik|Gm328|Jcad|mKIAA1462	RIKEN cDNA 9430020K01 gene	protein-coding	5.196	1.831	0.477	11.087	2.182	0.838	2.380	3.195	4.069	6.978	1.988	1.205	2.387	3.796	4.580	5.529	3.132	8.010	1.398	0.815	0.767	1.834	1.321	1.855	6.974
977	chr1	184328203	184330736	+	0	NA	Intergenic	Intergenic	228222	NR_040472	73590	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	4.204	0.553	0.559	2.698	0.679	0.242	2.663	1.026	1.706	1.804	0.502	0.471	3.067	2.267	1.871	4.094	2.867	3.805	0.530	0.469	0.194	0.750	0.216	0.263	4.085
15531	chr9	111045758	111054130	+	0	NA	Intergenic	RLTR31_Mur|LTR|ERVK	7300	NM_001302377	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	8.244	1.233	0.953	6.145	6.232	4.086	5.343	5.616	5.028	5.725	4.911	2.473	6.468	8.402	6.233	nan	4.732	8.036	1.305	2.056	1.484	1.248	1.495	1.045	7.273
9237	chr3	37316772	37320518	+	0	NA	intron (NM_001255992, intron 1 of 1)	intron (NM_001255992, intron 1 of 1)	6091	NM_001255992	241950	Mm.32171	NM_001008502	ENSMUSG00000051444	Bbs12	Gm1805|Gm407|Gm721	Bardet-Biedl syndrome 12 (human)	protein-coding	5.224	7.720	1.753	6.514	1.659	1.133	5.490	4.390	nan	6.339	3.187	2.445	6.759	6.536	7.009	8.620	3.543	7.419	nan	1.312	1.178	nan	1.129	1.231	10.269
13530	chr7	108982843	108988102	+	0	NA	Intergenic	RLTR31B2|LTR|ERVK	-25408	NM_021885	22141	Mm.439722	NM_021885	ENSMUSG00000031028	Tub	rd5|tub	tubby candidate gene	protein-coding	7.010	8.381	3.836	7.251	4.885	3.187	8.491	9.743	4.234	6.987	4.608	3.295	6.752	8.397	7.854	7.465	5.955	nan	8.081	5.750	4.629	9.045	7.577	7.215	12.036
13913	chr7	150244076	150245528	+	0	NA	Intergenic	Intergenic	4929967	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	4.203	6.707	1.384	5.629	1.335	0.695	2.431	3.151	3.890	4.359	4.624	1.309	2.514	3.297	3.762	6.377	2.058	4.981	1.302	0.690	0.513	1.579	nan	0.413	8.394
6813	chr17	67699372	67704470	+	0	NA	intron (NM_008480, intron 1 of 62)	intron (NM_008480, intron 1 of 62)	4656	NM_008480	16772	Mm.303386	NM_008480	ENSMUSG00000032796	Lama1	AA408497|Lama	laminin, alpha 1	protein-coding	4.852	2.038	0.742	7.973	2.356	1.160	8.208	4.556	nan	8.608	1.247	0.751	7.292	nan	8.354	10.769	6.653	9.349	1.681	0.659	0.681	1.342	1.235	1.554	13.835
15802	chrX	106207778	106209658	+	0	NA	intron (NM_001001176, intron 6 of 6)	intron (NM_001001176, intron 6 of 6)	11124	NM_001001176	407786	Mm.19440	NM_001001176	ENSMUSG00000047242	Taf9b	BC066223|Taf9l	TATA-box binding protein associated factor 9B	protein-coding	4.170	3.855	1.649	4.273	2.812	1.004	2.842	3.094	3.382	3.090	3.463	2.280	2.844	4.906	4.732	5.154	2.831	3.125	3.129	2.256	0.786	3.142	2.774	2.400	3.686
14266	chr8	67371702	67374585	+	0	NA	Intergenic	IAPLTR3-int|LTR|ERVK	-117615	NM_008673	17960	Mm.14125	NM_008673	ENSMUSG00000025588	Nat1	Nat-1	N-acetyl transferase 1	protein-coding	5.290	6.544	2.065	8.055	4.619	2.903	3.319	5.313	3.841	8.825	3.007	2.594	3.974	5.014	5.345	6.347	3.400	5.722	4.049	2.674	3.742	6.708	2.583	3.237	8.285
9876	chr3	151571778	151573436	+	0	NA	Intergenic	B3|SINE|B2	134725	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding	3.358	0.767	0.316	2.012	0.837	0.058	0.736	2.243	2.308	2.567	0.626	0.878	4.065	3.402	4.267	3.670	2.684	3.021	0.485	0.305	0.382	1.548	0.356	0.170	4.183
566	chr1	129568706	129575040	+	0	NA	intron (NM_172485, intron 2 of 27)	L1_Mus2|LINE|L1	298569	NM_172485	210417	Mm.380518	NM_172485	ENSMUSG00000042581	Thsd7b	1700074E13Rik|B930082A18|D130067I03Rik	thrombospondin, type I, domain containing 7B	protein-coding	2.276	nan	0.635	2.150	2.082	1.312	2.040	2.180	2.545	4.669	0.487	0.468	2.376	3.476	3.818	5.276	3.001	nan	nan	3.624	2.812	8.321	6.489	5.113	4.030
12359	chr6	83405467	83411312	+	0	NA	intron (NM_001347313, intron 3 of 11)	intron (NM_001347313, intron 3 of 11)	-7287	NR_105793	102465194		NR_105793	ENSMUSG00000099045	Mir6374	Gm27292|mmu-mir-6374	microRNA 6374	ncRNA	8.148	6.543	2.219	7.656	3.007	2.130	9.136	8.766	4.568	10.680	5.619	2.953	10.016	9.962	9.569	12.495	7.876	8.171	nan	1.896	2.896	5.265	2.335	3.608	13.221
4067	chr13	45801790	45803641	+	0	NA	intron (NM_001199304, intron 3 of 6)	intron (NM_001199304, intron 3 of 6)	162276	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	4.367	1.200	0.617	2.746	4.027	1.882	4.975	4.109	3.387	2.970	1.153	1.510	4.252	4.134	4.211	5.802	3.228	4.561	0.823	nan	0.909	0.470	0.572	1.063	4.373
15512	chr9	108953708	108958397	+	0	NA	exon (NM_007738, exon 6 of 118)	exon (NM_007738, exon 6 of 118)	2307	NM_007738	12836	Mm.6200	NM_007738	ENSMUSG00000025650	Col7a1	AW209154	collagen, type VII, alpha 1	protein-coding	4.700	20.139	8.577	5.848	3.138	1.568	2.122	3.085	3.047	3.227	2.898	1.882	2.004	3.019	2.919	3.780	2.600	3.546	1.981	2.893	1.626	0.812	1.616	0.913	5.099
14974	chr9	40607469	40610522	+	0	NA	Intergenic	Intergenic	-76969	NM_133733	71566	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	6.613	15.085	7.200	9.621	3.067	1.612	5.342	5.170	5.003	8.644	5.482	4.061	5.604	8.122	6.494	8.150	nan	9.168	nan	5.098	4.749	8.327	2.878	2.816	11.790
7349	chr18	67826359	67827881	+	0	NA	intron (NM_027556, intron 14 of 45)	B3|SINE|B2	27013	NM_027556	70799	Mm.30857	NM_027556	ENSMUSG00000024542	Cep192	4631422C13Rik|D430014P18Rik	centrosomal protein 192	protein-coding	3.182	0.887	0.271	1.938	2.590	1.568	4.375	3.234	2.899	2.302	0.659	0.631	4.953	3.943	3.297	4.163	2.735	3.551	0.524	0.302	0.677	0.548	0.278	0.127	5.212
13637	chr7	120097010	120101410	+	0	NA	Intergenic	ORR1A1|LTR|ERVL-MaLR	-3216	NM_145586	233806	Mm.257952	NM_145586	ENSMUSG00000030917	Tmem159	8430420C20Rik	transmembrane protein 159	protein-coding	3.790	0.659	0.176	2.060	0.664	0.146	6.363	8.223	2.635	3.743	3.587	1.105	7.320	4.526	7.423	6.822	5.583	4.936	1.633	0.679	0.584	2.659	0.829	1.023	9.831
10002	chr4	41080865	41085510	+	0	NA	Intergenic	RMER13A1|LTR|ERVK	14996	NM_016689	11828	Mm.34043	NM_016689	ENSMUSG00000028435	Aqp3	AQP-2	aquaporin 3	protein-coding	9.239	7.164	3.047	8.387	6.757	4.670	7.522	7.903	5.128	10.710	7.096	3.667	7.049	10.171	7.746	8.203	5.340	nan	4.815	3.361	3.582	4.163	4.211	4.206	12.124
2765	chr11	99351918	99356315	+	0	NA	Intergenic	B1_Mur1|SINE|Alu	-2998	NM_010666	16675	Mm.440476	NM_010666	ENSMUSG00000017588	Krt27	CK-27|Krt1-c29|mIRSa3.1|stpm	keratin 27	protein-coding	4.518	nan	0.512	3.356	2.702	1.345	5.617	5.399	4.716	4.510	4.022	5.110	6.378	6.885	6.447	7.547	4.897	6.089	0.587	nan	0.307	0.591	nan	nan	6.266
5687	chr15	101002992	101015540	+	0	NA	intron (NM_001077499, intron 14 of 26)	intron (NM_001077499, intron 14 of 26)	45133	NM_001214911	668225	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	6.891	3.391	1.299	6.346	4.737	2.859	8.537	11.891	5.537	7.518	4.960	3.264	7.882	7.430	6.983	7.302	7.917	6.973	2.287	1.909	1.705	2.408	2.175	1.872	8.270
11850	chr5	137949651	137952361	+	0	NA	Intergenic	L1_Rod|LINE|L1	11953	NM_080450	118446	Mm.332771	NM_080450	ENSMUSG00000056966	Gjc3	Cx29|Gje1	gap junction protein, gamma 3	protein-coding	4.526	5.031	2.097	5.297	6.429	5.318	5.986	4.639	3.729	10.760	2.764	2.231	4.204	6.746	4.218	5.884	5.088	4.444	2.842	2.547	4.369	2.263	2.799	4.985	7.256
10579	chr4	129777832	129792380	+	0	NA	Intergenic	Intergenic	-35373	NM_008974	19244	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	7.343	1.534	0.656	5.754	5.530	3.245	6.472	8.639	4.461	6.763	2.330	1.375	6.452	11.431	nan	7.513	4.331	7.708	2.465	2.247	1.148	2.646	2.779	1.773	8.015
2299	chr11	61555105	61557243	+	0	NA	intron (NM_001252189, intron 1 of 8)	B1_Mm|SINE|Alu	23513	NM_010148	13855	Mm.139695	NM_010148	ENSMUSG00000001036	Epn2	9530051D10Rik|AA536924|Ibp2	epsin 2	protein-coding	0.638	0.711	1.114	1.117	1.141	0.922	0.649	0.660	0.933	0.945	0.455	0.613	0.685	nan	0.634	0.588	0.902	0.746	3.307	2.901	3.481	2.735	5.258	5.941	nan
11816	chr5	136858319	136859421	+	0	NA	intron (NM_001346699, intron 1 of 12)	intron (NM_001346699, intron 1 of 12)	24237	NM_024474	140709	Mm.295020	NM_024474	ENSMUSG00000004415	Col26a1	9430032K24Rik|BC002218|Col26a|Emid2|Emu2	collagen, type XXVI, alpha 1	protein-coding	2.473	0.957	0.365	2.652	1.986	0.776	2.073	2.491	2.297	1.979	0.738	0.907	2.274	3.644	3.208	3.245	1.618	3.482	0.709	0.448	0.445	0.675	nan	0.526	2.606
8543	chr2	117646051	117649053	+	0	NA	Intergenic	Intergenic	165250	NR_126427	100504728	Mm.413174	NR_126427		Gm13985	OTTMUSG00000015235	predicted gene 13985	ncRNA	2.770	0.626	0.346	1.339	2.032	0.901	2.768	4.443	2.511	2.291	6.147	2.426	3.037	4.029	3.949	nan	2.885	2.821	1.906	1.091	0.591	1.374	1.538	1.216	2.360
108	chr1	37622896	37625118	+	0	NA	exon (NM_028096, exon 7 of 10)	exon (NM_028096, exon 7 of 10)	-82991	NM_173870	269181	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	5.002	2.592	2.240	1.124	0.764	0.783	2.890	5.494	2.240	1.875	4.210	3.335	3.893	2.947	3.085	nan	4.881	2.473	1.035	0.850	1.158	2.079	1.131	0.727	2.237
2820	chr11	102044602	102047346	+	0	NA	intron (NM_027987, intron 2 of 6)	intron (NM_027987, intron 2 of 6)	4463	NM_001160713	52685	Mm.266885	NM_027987	ENSMUSG00000017309	Cd300lg	2310016B05Rik|Clm9|D11Ertd736e	CD300 molecule like family member G	protein-coding	9.595	8.789	5.034	7.819	8.616	6.104	7.008	6.700	6.139	9.404	5.875	4.015	7.448	10.761	6.520	8.342	8.923	7.900	5.442	nan	3.810	4.930	nan	nan	7.754
15116	chr9	57280200	57282107	+	0	NA	Intergenic	Intergenic	-18554	NM_028820	74211	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	7.314	12.040	2.700	5.147	1.276	0.370	5.011	5.147	4.241	4.509	4.467	2.330	5.479	4.817	7.415	8.096	3.003	6.831	6.043	1.961	1.324	6.725	2.891	1.956	13.432
604	chr1	133241105	133243240	+	0	NA	Intergenic	Intergenic	-3925	NM_001160268	240753	Mm.253559	NM_182930	ENSMUSG00000041757	Plekha6	9530028L01Rik|AU042621|Pepp3	pleckstrin homology domain containing, family A member 6	protein-coding	5.947	1.277	0.414	3.206	1.520	1.043	3.485	2.187	2.993	3.446	0.974	0.815	6.500	4.220	5.771	8.587	6.241	5.954	1.551	0.870	0.631	1.455	0.496	0.392	5.181
6475	chr17	28390544	28393513	+	0	NA	Intergenic	Intergenic	-26885	NM_021478	22157	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	3.274	2.409	1.760	2.118	4.914	4.431	3.435	3.054	2.268	2.865	4.211	3.353	1.523	3.440	1.610	nan	2.512	1.604	3.465	4.656	4.705	3.093	4.787	5.593	2.493
15423	chr9	100404603	100408614	+	0	NA	Intergenic	Intergenic	79865	NM_001033543	213208	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	7.207	2.050	1.341	5.858	3.269	1.664	2.956	5.195	5.215	5.244	3.476	3.650	3.891	4.221	2.844	3.419	3.660	6.225	1.534	1.923	1.002	0.905	1.144	0.798	2.330
15362	chr9	85661431	85666080	+	0	NA	Intergenic	Intergenic	85579	NM_001081282	108837	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	5.144	0.549	0.481	3.000	3.646	2.255	5.056	7.795	3.373	4.064	1.441	1.484	4.756	5.588	4.125	3.480	3.239	4.283	0.701	0.796	0.503	0.659	0.652	0.473	2.715
14518	chr8	107694854	107697999	+	0	NA	Intergenic	Intergenic	-107944	NM_010817	17463	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	5.704	10.136	3.517	7.559	1.899	1.484	3.770	5.476	3.762	8.573	4.721	3.169	4.930	4.927	5.822	6.943	3.621	6.112	4.930	3.395	3.278	nan	5.782	6.414	9.407
4880	chr14	77436038	77438416	+	0	NA	intron (NM_001253759, intron 4 of 19)	URR1A|DNA|hAT-Charlie	69641	NR_033141	629678	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	7.088	8.402	3.804	3.644	2.330	2.476	5.312	7.757	5.571	10.318	6.785	4.558	3.833	6.846	5.655	9.479	5.929	7.852	2.353	0.678	1.167	1.504	1.496	2.360	8.296
2623	chr11	88859535	88864666	+	0	NA	intron (NR_126433, intron 3 of 4)	L1_Mus3|LINE|L1	2486	NM_001042541	11640	Mm.2969	NM_009648	ENSMUSG00000018428	Akap1	AKAP121|AKAP84|Akap|C76494|C81186|DAKAP1|S-AKAP84	A kinase (PRKA) anchor protein 1	protein-coding	8.349	7.965	2.446	9.456	4.710	3.192	4.489	7.214	5.695	7.603	5.056	2.763	5.888	7.149	7.044	8.701	4.373	7.468	4.461	3.280	2.952	nan	3.638	3.338	nan
15851	chrX	156573954	156576886	+	0	NA	Intergenic	Intergenic	35937	NR_033598	74941	Mm.484588	NR_033598		4930503H13Rik	-	gem (nuclear organelle) associated protein 8 pseudogene	pseudo	4.705	6.795	1.797	4.780	1.308	0.871	3.902	4.597	4.244	6.322	3.561	1.880	4.693	5.524	4.607	5.333	2.645	6.273	2.282	1.053	0.876	2.713	0.701	0.988	7.906
13744	chr7	133742351	133743391	+	0	NA	intron (NM_133941, intron 3 of 11)	intron (NM_133941, intron 3 of 11)	17398	NM_001286030	101437	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	3.045	1.986	0.454	3.100	2.355	1.462	2.850	4.031	2.301	2.135	2.927	2.372	2.193	3.611	2.789	1.614	1.090	2.966	0.793	0.344	0.570	0.972	0.763	0.423	3.928
330	chr1	76640711	76643323	+	0	NA	Intergenic	Intergenic	132457	NR_105761	102465175		NR_105761	ENSMUSG00000098611	Mir6343	Gm27304|mmu-mir-6343	microRNA 6343	ncRNA	1.904	0.264	0.250	0.278	1.017	0.046	1.252	2.161	0.650	1.111	6.620	1.011	1.174	1.351	1.471	nan	1.751	nan	nan	nan	0.141	1.521	nan	0.149	nan
7879	chr19	53927074	53932468	+	0	NA	TTS (NM_001168492)	TTS (NM_001168492)	-14535	NM_001168505	56392	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	0.908	nan	0.504	1.021	0.286	0.104	3.165	4.979	0.960	0.692	1.967	1.359	0.314	0.626	nan	1.258	0.774	0.571	1.806	1.403	1.113	4.402	2.667	1.934	nan
5734	chr15	102500046	102505061	+	0	NA	intron (NM_009582, intron 7 of 13)	intron (NM_009582, intron 7 of 13)	14451	NM_001163643	26404	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	8.595	7.608	3.033	8.401	3.822	2.055	10.786	10.820	5.777	7.435	5.575	4.106	9.614	9.592	11.538	8.838	9.284	8.665	4.332	2.280	1.905	3.175	3.577	3.139	11.704
13961	chr7	152316289	152317878	+	0	NA	Intergenic	Intergenic	7002248	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	3.715	nan	0.365	4.864	1.432	0.770	4.492	10.190	2.656	4.405	5.273	4.061	5.303	3.973	4.635	6.911	2.291	6.092	4.144	1.591	0.963	2.883	nan	3.727	8.765
1857	chr10	127527919	127532455	+	0	NA	intron (NM_183297, intron 1 of 1)	intron (NM_183297, intron 1 of 1)	4372	NM_183297	104080	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	12.339	15.612	5.677	8.416	7.238	4.572	8.866	10.755	5.075	8.690	8.153	3.616	6.601	12.321	8.194	9.482	8.825	7.099	6.049	4.111	3.475	5.608	nan	4.725	13.399
360	chr1	82760211	82765107	+	0	NA	intron (NM_025453, intron 2 of 3)	intron (NM_025453, intron 2 of 3)	5797	NM_025453	66261	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	7.563	0.544	0.452	1.813	1.568	0.966	7.414	4.526	3.180	3.844	0.646	1.080	8.666	4.737	5.279	5.634	4.486	5.835	nan	nan	0.325	0.465	nan	0.272	3.712
15323	chr9	75870171	75873912	+	0	NA	intron (NM_007555, intron 3 of 6)	RMER1B|Other|Other	96676	NM_007555	12160	Mm.428950	NM_007555	ENSMUSG00000032179	Bmp5	AU023399|se	bone morphogenetic protein 5	protein-coding	4.046	0.701	0.511	3.603	2.700	1.085	3.946	4.339	5.052	4.526	7.676	5.852	5.696	6.308	3.956	4.251	3.066	5.893	2.498	nan	0.760	2.314	1.439	1.027	nan
12158	chr6	35949423	35954771	+	0	NA	Intergenic	Intergenic	-412209	NM_008098	14489	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	3.342	0.431	0.375	2.301	2.300	1.367	6.365	2.558	2.569	3.017	0.409	0.655	7.463	6.133	6.813	6.418	5.965	nan	nan	0.637	0.423	nan	nan	0.413	nan
9156	chr3	19324490	19331313	+	0	NA	Intergenic	Intergenic	-16579	NM_001122759	18583	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	5.948	nan	1.870	3.634	4.675	3.097	6.021	5.873	6.596	6.695	7.680	3.859	7.812	7.799	5.172	5.352	4.131	6.408	1.193	1.004	0.730	1.489	0.584	0.607	4.776
11812	chr5	136611108	136613011	+	0	NA	Intergenic	RMER1B|Other|Other	-44569	NM_001291238	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	5.653	9.405	4.230	6.792	3.981	3.969	6.010	5.191	4.737	5.479	4.939	3.229	4.629	6.345	6.601	6.642	4.445	5.705	4.312	3.152	5.478	4.382	4.774	5.627	8.354
14008	chr8	11497576	11500687	+	0	NA	intron (NM_026995, intron 1 of 9)	intron (NM_026995, intron 1 of 9)	1563	NM_026995	69225	Mm.64911	NM_026995	ENSMUSG00000031505	Naxd	0710008K08Rik|2810407E01Rik|Carkd	NAD(P)HX dehydratase	protein-coding	7.806	3.920	1.452	6.545	4.194	3.293	6.706	8.937	6.684	8.960	3.149	2.322	9.635	8.746	8.397	10.592	7.604	11.140	1.719	1.339	2.034	1.939	1.250	1.269	10.660
10562	chr4	129176961	129180752	+	0	NA	intron (NM_001347203, intron 6 of 8)	intron (NM_001347203, intron 6 of 8)	10626	NM_029036	74648	Mm.172064	NM_029036	ENSMUSG00000040928	S100pbp	4930429A08Rik|AI851343|S100pbpr	S100P binding protein	protein-coding	3.523	3.791	1.590	5.427	2.491	2.025	5.212	5.269	2.454	2.712	1.946	1.327	2.449	3.502	nan	3.951	2.304	3.259	2.234	2.194	1.674	2.866	2.365	2.151	4.785
9357	chr3	63696259	63699001	+	0	NA	exon (NM_183191, exon 23 of 23)	exon (NM_183191, exon 23 of 23)	153361	NM_001177733	269437	Mm.316391	NM_183191	ENSMUSG00000036834	Plch1	BC042549|PLC-eta-1|PLCeta1|Plcl3	phospholipase C, eta 1	protein-coding	3.467	0.539	0.236	1.677	1.069	0.407	7.496	4.981	2.296	1.961	8.187	4.232	7.318	4.597	4.402	3.250	3.396	3.554	0.742	1.027	0.313	0.443	2.456	1.567	1.975
7475	chr19	4183713	4191026	+	0	NA	intron (NM_178650, intron 8 of 9)	L2|LINE|L2	3678	NM_178650	108995	Mm.288312	NM_178650	ENSMUSG00000040247	Tbc1d10c	1810062O14Rik|AI428527	TBC1 domain family, member 10c	protein-coding	1.836	14.062	5.395	2.308	1.320	0.797	1.160	1.206	nan	1.409	0.775	0.414	0.517	0.917	1.414	nan	1.236	1.488	0.508	1.424	1.374	1.152	0.895	0.607	1.694
10993	chr4	155134864	155136298	+	0	NA	intron (NM_001081100, intron 12 of 13)	intron (NM_001081100, intron 12 of 13)	49004	NM_001081100	76866	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	3.619	5.613	0.570	6.137	0.920	1.105	3.499	3.924	2.435	4.494	2.957	2.356	3.925	3.996	7.409	7.020	1.771	6.238	1.712	0.177	0.769	2.552	0.730	1.294	9.933
8449	chr2	91847664	91849485	+	0	NA	intron (NM_172669, intron 11 of 17)	intron (NM_172669, intron 11 of 17)	-73615	NM_007699	12672	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	5.111	5.700	1.574	4.606	1.829	1.065	4.593	8.789	3.040	3.150	1.752	1.439	3.941	6.271	4.620	7.484	3.224	5.120	2.513	1.417	1.113	3.000	1.421	0.984	7.442
3160	chr12	4913032	4916286	+	0	NA	Intergenic	BGLII_Mur|LTR|ERVK	-2694	NM_001099628	320817	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	6.073	7.659	2.577	6.295	4.370	3.331	5.264	4.124	4.151	8.622	3.237	1.825	4.791	6.362	5.546	7.093	4.823	5.611	3.460	2.203	2.664	3.396	3.168	3.439	9.819
2321	chr11	63319249	63324914	+	0	NA	intron (NR_105772, intron 4 of 6)	intron (NR_105772, intron 4 of 6)	63988	NR_105772	102466632		NR_105772	ENSMUSG00000098829	Mir6354	Gm27282|mmu-mir-6354	microRNA 6354	ncRNA	1.454	0.439	0.453	1.453	1.934	1.316	3.480	5.998	1.703	1.392	0.686	0.354	2.955	nan	2.454	3.866	5.104	2.571	0.644	0.716	0.573	0.557	nan	0.477	nan
13873	chr7	147301228	147303435	+	0	NA	Intergenic	Intergenic	1987496	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	6.823	nan	2.901	nan	4.953	1.971	7.767	11.368	5.606	6.207	7.467	3.724	8.726	10.987	5.888	6.884	6.581	6.463	4.123	4.078	2.928	4.878	nan	3.744	8.460
5798	chr16	11156034	11158046	+	0	NA	intron (NM_145931, intron 7 of 22)	intron (NM_145931, intron 7 of 22)	19353	NR_027502	106205	Mm.226860	NM_145931	ENSMUSG00000037965	Zc3h7a	A430104C18Rik|AI447294|AW556219|HSPC055|Zc3h7|Zc3hdc7	zinc finger CCCH type containing 7 A	protein-coding	4.638	1.833	1.353	1.925	4.758	3.662	5.524	4.196	1.382	2.473	1.532	1.732	2.979	4.818	2.882	2.226	3.562	3.523	0.889	1.132	1.025	0.725	1.161	0.955	2.946
15046	chr9	47355443	47357947	+	0	NA	Intergenic	MLT2B5|LTR|ERVL	-173475	NM_001310841	54725	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	2.249	0.530	0.875	2.260	3.102	0.977	0.618	0.606	1.690	2.467	0.524	0.489	0.884	3.081	nan	2.666	1.453	4.650	0.949	1.321	0.235	nan	0.881	0.191	4.936
3082	chr11	119557400	119558610	+	0	NA	intron (NR_045099, intron 1 of 3)	intron (NR_045099, intron 1 of 3)	9375	NR_045099	100503830	Mm.428077	NR_045099	ENSMUSG00000087675	Gm11762	OTTMUSG00000004029	predicted gene 11762	ncRNA	1.348	0.690	0.176	1.676	3.097	2.340	nan	2.650	2.584	nan	2.797	2.801	1.531	3.884	2.212	2.831	1.580	4.066	1.162	nan	0.203	0.757	0.852	0.310	1.672
7517	chr19	7092376	7094626	+	0	NA	3' UTR (NM_201411, exon 2 of 2)	3' UTR (NM_201411, exon 2 of 2)	12228	NM_201411	396184	Mm.386930	NM_201411	ENSMUSG00000047787	Flrt1	AW742165|D630040I23Rik	fibronectin leucine rich transmembrane protein 1	protein-coding	6.404	22.016	8.100	5.695	2.078	1.230	1.831	2.333	nan	3.538	4.625	2.861	2.009	3.036	3.239	3.710	2.257	3.848	0.778	1.950	1.770	1.156	0.328	0.731	5.654
14634	chr8	118226609	118232285	+	0	NA	Intergenic	Intergenic	-54164	NM_019707	12554	Mm.334841	NM_019707	ENSMUSG00000031841	Cdh13	4932416G01Rik|Cdht|Tcad	cadherin 13	protein-coding	2.896	6.649	2.899	4.051	1.934	1.323	1.564	1.831	2.323	4.242	7.461	2.761	1.397	1.956	2.491	nan	1.595	1.941	3.121	2.163	2.679	5.089	1.999	2.448	2.059
15145	chr9	59602915	59604690	+	0	NA	intron (NM_001311092, intron 7 of 10)	intron (NM_001311092, intron 7 of 10)	-13482	NR_038075	67287	Mm.439943	NM_029922	ENSMUSG00000025237	Parp6	1700119G14Rik|2310028P13Rik|3110038K10Rik|ARTD17|C030013N01Rik|PARP-6	poly (ADP-ribose) polymerase family, member 6	protein-coding	5.499	1.139	1.134	3.201	2.103	1.464	2.226	nan	3.339	3.100	0.920	0.883	4.472	4.612	2.093	2.458	3.531	3.877	1.385	2.058	1.745	1.044	2.702	1.858	2.343
4595	chr14	34163444	34169158	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-13882	NM_008919	19065	Mm.57059	NM_008919	ENSMUSG00000048337	Npy4r	NYYR-D|Ppyr1|Y4	neuropeptide Y receptor Y4	protein-coding	5.736	0.779	0.345	3.561	2.424	1.466	8.990	5.940	3.154	5.260	2.475	1.687	7.033	8.965	7.387	8.567	4.005	7.022	0.738	0.409	0.485	0.926	0.286	0.387	9.540
11511	chr5	104284489	104286057	+	0	NA	Intergenic	Intergenic	-14014	NM_008318	15891	Mm.4987	NM_008318	ENSMUSG00000029306	Ibsp	BSP|BSP II|BSPII|Bsp2	integrin binding sialoprotein	protein-coding	2.073	1.006	0.477	1.689	1.085	0.233	2.376	3.023	1.458	1.933	1.809	0.710	1.827	4.269	3.940	3.959	2.760	2.883	3.248	1.000	0.589	1.284	1.361	1.091	3.451
7872	chr19	53524239	53528165	+	0	NA	Intergenic	Intergenic	-3116	NM_001085390	240672	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	3.235	1.797	0.965	1.737	0.739	0.219	3.197	5.368	1.469	1.556	3.620	2.198	1.544	3.774	3.791	2.970	1.517	2.515	0.330	0.483	0.397	0.550	0.328	0.264	nan
13962	chr7	152467594	152474845	+	0	NA	Intergenic	Intergenic	7156384	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	nan	nan	1.203	nan	6.171	4.743	4.797	5.504	nan	7.453	7.682	2.895	6.207	8.294	5.478	6.300	4.245	6.454	2.839	2.572	1.877	3.301	nan	2.831	nan
3506	chr12	81117100	81120503	+	0	NA	intron (NM_022316, intron 3 of 12)	intron (NM_022316, intron 3 of 12)	-47350	NR_037227	100526532		NR_037227	ENSMUSG00000092673	Mir3067	mir-3067|mmu-mir-3067	microRNA 3067	ncRNA	6.434	1.626	1.130	3.963	2.564	1.058	7.652	3.475	3.824	4.367	1.119	1.041	9.076	9.068	6.710	10.101	8.056	6.210	0.838	0.455	0.360	0.767	0.562	0.182	11.004
10027	chr4	44095954	44097784	+	0	NA	Intergenic	Intergenic	-12692	NM_015828	50798	Mm.256718	NM_015828	ENSMUSG00000028479	Gne	2310066H07Rik|DMRV|GLCNE|IBM2|NM|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding	2.774	1.670	0.520	3.547	1.941	0.834	3.625	3.048	2.560	2.355	2.182	1.578	4.649	4.225	6.635	5.460	4.089	3.715	4.003	1.602	0.485	nan	1.447	1.380	2.178
9903	chr4	6807324	6812163	+	0	NA	intron (NM_145711, intron 3 of 8)	ORR1G|LTR|ERVL-MaLR	180980	NM_145711	252838	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	0.665	2.670	0.910	1.301	0.374	0.216	0.405	nan	0.735	0.869	0.266	0.529	0.543	0.687	0.937	0.918	0.614	1.235	2.512	nan	0.731	5.315	1.399	0.654	0.709
4587	chr14	32245536	32249196	+	0	NA	intron (NM_011960, intron 9 of 17)	MT2B|LTR|ERVL	45395	NM_011960	26430	Mm.15962	NM_011960	ENSMUSG00000021911	Parg	AI413217	poly (ADP-ribose) glycohydrolase	protein-coding	3.923	17.930	8.055	6.305	2.691	1.851	1.407	1.482	2.551	3.719	1.889	1.339	1.385	2.375	2.237	2.853	1.859	nan	1.197	1.807	1.822	nan	1.010	0.885	3.544
12415	chr6	87961562	87964335	+	0	NA	Intergenic	RLTR9D|LTR|ERVK	18534	NM_198622	243529	Mm.33796	NM_198622	ENSMUSG00000044927	H1fx	Gm461|H1.10|H1X	H1 histone family, member X	protein-coding	4.326	0.666	0.800	nan	3.864	2.471	4.555	3.097	1.971	2.651	1.707	0.791	3.222	5.932	2.447	2.979	2.824	4.210	nan	0.775	0.627	0.808	0.771	0.834	4.428
682	chr1	137639069	137641057	+	0	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	-326392	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	5.755	2.470	0.889	6.713	1.842	1.529	2.435	2.254	3.581	4.522	3.105	1.150	2.786	4.686	3.642	6.939	2.643	5.845	2.093	0.758	0.788	2.207	1.172	0.824	9.717
2971	chr11	114683703	114685526	+	0	NA	intron (NM_053273, intron 1 of 13)	intron (NM_053273, intron 1 of 13)	9146	NM_053273	117160	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	3.432	nan	0.352	1.438	0.373	0.124	3.535	3.384	0.912	nan	1.170	0.544	4.207	3.568	2.748	2.520	2.748	1.327	2.319	nan	1.620	4.315	1.696	1.297	3.894
353	chr1	82278784	82282741	+	0	NA	intron (NM_010570, intron 1 of 1)	B1_Mur3|SINE|Alu	10677	NM_010570	16367	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding	7.318	3.362	1.904	5.737	3.917	2.152	2.906	3.967	3.674	5.139	4.142	3.063	2.411	4.380	4.181	5.677	7.292	nan	nan	nan	2.012	3.971	nan	3.672	nan
3633	chr12	100629511	100632082	+	0	NA	intron (NM_153587, intron 3 of 17)	intron (NM_153587, intron 3 of 17)	94324	NM_001330702	73086	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	9.699	9.841	2.766	9.451	3.581	2.328	6.637	6.649	5.261	10.534	6.350	3.490	8.180	7.577	8.996	11.362	7.653	9.061	3.740	1.502	1.454	4.278	2.417	2.612	16.044
375	chr1	87596876	87601118	+	0	NA	Intergenic	Intergenic	4447	NM_015750	23956	Mm.143717	NM_015750	ENSMUSG00000079434	Neu2	MBS|MSS|MTS	neuraminidase 2	protein-coding	5.756	9.449	4.863	2.766	3.030	2.246	4.243	2.191	1.803	2.002	0.921	0.316	2.468	3.233	3.991	5.911	3.277	3.777	1.399	1.391	1.011	nan	1.265	0.694	4.863
5774	chr16	10285875	10289390	+	0	NA	intron (NM_007929, intron 3 of 4)	MER58C|DNA|hAT-Charlie	26336	NM_007929	13731	Mm.246009	NM_007929	ENSMUSG00000022505	Emp2	XMP	epithelial membrane protein 2	protein-coding	4.306	5.393	3.730	3.398	5.113	2.813	7.114	7.628	3.712	3.989	4.441	3.552	6.331	8.262	7.082	7.589	3.595	6.432	2.246	0.852	0.679	2.081	1.070	0.813	6.261
14726	chr8	125040203	125043835	+	0	NA	Intergenic	Intergenic	-12176	NM_174853	244667	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	3.607	nan	0.657	7.139	2.153	1.189	nan	nan	2.662	2.649	1.824	1.173	1.410	1.985	2.580	3.114	1.707	4.494	nan	0.787	1.067	nan	0.455	nan	4.401
3944	chr13	34156899	34161098	+	0	NA	Intergenic	B3|SINE|B2	-3966	NM_001101430	69666	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	3.745	nan	0.712	2.714	4.659	3.467	4.608	4.095	nan	nan	1.623	0.768	4.258	7.586	4.956	4.827	5.132	4.655	0.717	0.838	1.012	0.759	0.767	0.862	5.631
2409	chr11	70616826	70618389	+	0	NA	TTS (NM_001145537)	TTS (NM_001145537)	1587	NM_009603	11448	Mm.4980	NM_009603	ENSMUSG00000014609	Chrne	AChrepsilon|Acre|nAChRE	cholinergic receptor, nicotinic, epsilon polypeptide	protein-coding	4.369	11.094	3.230	3.041	1.335	0.554	1.875	1.635	3.053	4.094	2.480	0.976	2.503	3.072	3.380	3.825	2.090	4.193	3.328	2.576	0.578	3.510	nan	1.228	3.918
15038	chr9	45767240	45768299	+	0	NA	3' UTR (NM_001081373, exon 30 of 30)	3' UTR (NM_001081373, exon 30 of 30)	60869	NM_001081373	214552	Mm.260103	NM_172531	ENSMUSG00000043987	Cep164	AI450905|BC027092|D030051D21|mKIAA1052	centrosomal protein 164	protein-coding	5.249	1.417	0.881	1.744	1.665	1.609	2.288	4.987	3.131	3.293	1.439	0.381	1.914	3.538	2.826	nan	3.070	2.550	0.766	0.302	1.012	nan	0.563	0.866	4.822
8971	chr2	164958755	164963335	+	0	NA	Intergenic	(CGGGG)n|Simple_repeat|Simple_repeat	-6943	NM_020333	57138	Mm.252987	NM_020333	ENSMUSG00000017740	Slc12a5	KCC2|mKIAA1176	solute carrier family 12, member 5	protein-coding	0.313	0.735	0.214	0.366	0.204	0.108	0.269	0.365	0.284	0.343	0.228	0.178	0.145	nan	0.296	0.623	0.329	nan	4.392	2.775	2.884	5.697	4.519	4.234	nan
4189	chr13	59610170	59612463	+	0	NA	intron (NM_030153, intron 11 of 22)	B2_Mm2|SINE|B2	25983	NM_030153	78689	Mm.253902	NM_030153	ENSMUSG00000021555	Naa35	A330021G12Rik|A330027C19Rik|AI158944|C030004C14Rik|Mak10	N(alpha)-acetyltransferase 35, NatC auxiliary subunit	protein-coding	11.789	7.257	6.888	5.297	11.836	6.722	10.301	8.697	7.112	8.771	4.921	3.240	9.605	14.803	7.366	8.578	9.019	7.489	5.935	6.393	3.127	4.908	6.378	4.165	7.705
10933	chr4	150150016	150164144	+	0	NA	intron (NM_001085529, intron 4 of 11)	B2_Mm1a|SINE|B2	8108	NM_001085529	435818	Mm.359648	NM_001085529	ENSMUSG00000062064	Slc2a7	OTTMUSG00000010396	solute carrier family 2 (facilitated glucose transporter), member 7	protein-coding	4.941	nan	0.861	4.866	5.862	3.671	4.878	7.290	4.473	5.159	3.314	2.270	5.288	8.032	5.876	6.409	3.462	4.570	2.077	1.120	0.826	3.174	1.379	0.863	5.880
11776	chr5	134912479	134914099	+	0	NA	TTS (NM_020504)	TTS (NM_020504)	2241	NM_020504	57255	Mm.86652	NM_020504	ENSMUSG00000008843	Cldn13	2500004B14Rik	claudin 13	protein-coding	3.199	1.662	0.853	2.928	2.199	0.923	7.467	7.550	2.115	2.414	3.004	1.752	4.006	4.147	4.309	5.141	2.114	2.930	1.892	1.854	1.052	2.415	nan	0.659	4.903
14254	chr8	63897953	63899765	+	0	NA	Intergenic	Intergenic	53311	NM_001195687	244495	Mm.485331	NM_001195687	ENSMUSG00000094443	Sgol2b	EG244495|Gm4975|Sgo2B	shugoshin like 2b (S. pombe)	protein-coding	3.844	0.576	0.416	1.025	0.685	0.899	3.912	7.085	1.766	2.245	1.638	1.024	4.638	4.279	4.544	5.331	3.008	2.559	nan	1.091	0.624	2.130	0.508	0.436	2.559
9729	chr3	116563507	116566193	+	0	NA	intron (NM_027321, intron 1 of 4)	intron (NM_027321, intron 1 of 4)	1877	NM_175413	109245	Mm.216027	NM_027321	ENSMUSG00000027961	Lrrc39	2010005E21Rik|9430028I06Rik|Myomasp	leucine rich repeat containing 39	protein-coding	6.288	3.612	1.997	4.056	2.789	1.894	6.488	4.309	3.325	nan	5.015	4.226	3.419	6.400	4.217	nan	4.237	3.131	3.855	3.254	2.459	3.852	3.920	2.287	nan
501	chr1	108691786	108696932	+	0	NA	Intergenic	L1_Rod|LINE|L1	777100	NR_102307	319596	Mm.136054	NR_102306	ENSMUSG00000100457	D830032E09Rik	-	RIKEN cDNA D830032E09 gene	ncRNA	8.931	nan	1.487	3.881	2.966	1.291	4.460	5.545	3.824	5.324	5.950	3.495	7.059	5.864	6.033	9.521	7.123	6.756	1.856	1.115	0.662	1.836	0.837	1.003	5.699
12464	chr6	91632550	91641654	+	0	NA	Intergenic	Intergenic	-46965	NM_009320	21366	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	5.598	4.339	2.077	nan	3.155	1.951	5.081	7.355	2.801	4.047	2.695	2.059	4.598	5.602	5.820	7.866	4.707	4.984	nan	2.199	2.878	3.840	3.058	2.934	6.986
12285	chr6	66892026	66896222	+	0	NA	Intergenic	Intergenic	-2273	NM_001177557	14701	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	1.887	10.775	6.000	1.466	1.040	0.354	4.253	2.720	1.595	0.991	1.399	1.677	2.177	2.712	3.276	3.807	2.679	2.556	0.782	1.207	0.469	0.685	0.770	0.401	1.606
15289	chr9	72314733	72316759	+	0	NA	intron (NM_001311105, intron 9 of 20)	intron (NM_001311105, intron 9 of 20)	40858	NM_001311105	235469	Mm.242791	NM_146224	ENSMUSG00000038535	Zfp280d	A930005F02Rik|BC027163|Suhw4|ZNF634|Znf280d	zinc finger protein 280D	protein-coding	2.289	9.383	5.650	1.100	0.549	0.221	0.550	0.514	0.977	1.183	0.263	0.398	0.518	0.827	nan	0.953	0.689	1.061	nan	1.916	1.339	0.610	0.922	0.621	1.309
5944	chr16	25402756	25428755	+	0	NA	intron (NM_175165, intron 5 of 5)	intron (NM_175165, intron 5 of 5)	128938	NM_175165	71338	Mm.126851	NM_175165	ENSMUSG00000048399	Tprg	5430420C16Rik|Tprg1	transformation related protein 63 regulated	protein-coding	6.026	0.746	0.480	2.363	3.725	1.906	6.992	7.397	5.801	5.777	2.869	3.316	nan	7.681	5.417	nan	4.876	7.031	1.430	1.598	0.990	2.947	nan	1.021	3.819
2650	chr11	94134622	94139107	+	0	NA	Intergenic	Intergenic	-74590	NM_009427	22057	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	1.522	nan	0.492	2.201	1.278	0.542	1.841	3.245	2.845	2.674	3.127	2.093	1.881	2.152	2.431	3.759	nan	2.994	2.420	nan	0.638	4.733	nan	nan	2.421
9188	chr3	27514388	27517673	+	0	NA	intron (NM_173182, intron 6 of 25)	intron (NM_173182, intron 6 of 25)	68965	NR_037275	100526525		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	7.941	2.123	0.998	5.097	3.885	2.208	4.474	5.095	4.205	4.339	4.271	1.630	3.909	4.507	4.649	4.761	3.471	5.989	1.983	1.924	1.788	3.856	2.022	1.139	9.549
155	chr1	51346125	51350567	+	0	NA	Intergenic	Intergenic	-14567	NR_045151	442821	Mm.118030	NR_045151	ENSMUSG00000101799	9330175M20Rik	-	RIKEN cDNA 9330175M20 gene	ncRNA	4.512	0.833	0.618	8.110	1.323	1.033	2.275	3.577	3.782	2.569	2.320	1.990	2.325	2.573	3.124	4.944	2.252	5.496	nan	1.180	0.739	1.508	2.183	1.793	3.194
11837	chr5	137521150	137522946	+	0	NA	intron (NM_031408, intron 10 of 23)	intron (NM_031408, intron 10 of 23)	3168	NM_031408	57330	Mm.268344	NM_031408	ENSMUSG00000029714	Gigyf1	Perq1|mKIAA4110	GRB10 interacting GYF protein 1	protein-coding	5.941	4.836	2.155	4.441	4.112	1.705	5.638	6.136	3.148	5.196	4.087	2.422	3.673	6.962	4.027	4.644	4.145	4.251	4.782	5.546	4.120	3.961	8.879	6.075	7.686
14203	chr8	47214960	47218559	+	0	NA	intron (NM_175162, intron 1 of 4)	intron (NM_175162, intron 1 of 4)	72643	NM_001286376	71069	Mm.23973	NM_175162	ENSMUSG00000038143	Stox2	4933409N07Rik|AI449080|AI835114|mKIAA1392	storkhead box 2	protein-coding	3.755	1.768	1.475	2.189	2.754	2.439	1.780	2.246	3.512	3.952	0.493	0.596	2.777	2.847	2.298	4.624	3.168	4.747	0.989	1.476	1.250	0.726	0.846	1.037	3.373
13295	chr7	75222707	75226355	+	0	NA	intron (NM_153579, intron 1 of 12)	intron (NM_153579, intron 1 of 12)	83855	NM_001109753	64176	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	3.645	0.555	0.286	1.920	0.879	0.382	4.915	5.744	2.213	2.077	1.284	2.118	7.109	4.736	4.744	nan	5.342	3.354	1.467	0.610	0.199	1.220	1.089	0.555	2.968
626	chr1	134915389	134917858	+	0	NA	intron (NM_001081307, intron 1 of 23)	MTB|LTR|ERVL-MaLR	39317	NM_001081307	329251	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	5.968	4.306	2.367	nan	1.778	1.054	1.186	1.015	2.185	1.723	5.766	3.208	0.732	nan	0.971	2.681	1.470	2.912	1.547	1.063	1.164	0.980	0.911	0.703	2.108
12551	chr6	100794632	100802015	+	0	NA	intron (NM_198612, intron 6 of 6)	intron (NM_198612, intron 6 of 6)	-35315	NM_182939	232314	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	3.444	2.724	2.220	2.144	3.584	3.224	2.434	4.115	4.084	3.835	1.203	1.210	4.812	4.823	3.113	5.921	4.991	4.761	nan	nan	0.936	0.646	0.680	0.700	1.852
6175	chr16	87091619	87092857	+	0	NA	Intergenic	Intergenic	-261947	NM_001159331	67768	Mm.296532	NM_026366	ENSMUSG00000044442	N6amt1	5830445C04Rik|Hemk2|Pred28	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding	4.600	nan	0.157	1.713	0.862	0.484	0.854	5.270	1.202	1.356	3.090	4.024	3.083	3.735	2.541	0.743	2.028	2.830	0.901	0.071	0.171	nan	0.138	0.225	1.519
11128	chr5	32276654	32277787	+	0	NA	intron (NM_001081407, intron 10 of 58)	L1MA6|LINE|L1	38136	NM_001081407	665270	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	1.840	0.834	0.592	3.795	2.097	2.016	1.793	4.005	2.724	2.833	2.015	1.653	2.280	3.498	1.559	1.420	1.180	2.426	3.607	0.939	1.660	2.945	3.291	3.083	1.052
13630	chr7	119854747	119856054	+	0	NA	3' UTR (NM_001163703, exon 3 of 3)	3' UTR (NM_001163703, exon 3 of 3)	40058	NM_173408	233805	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	2.685	0.738	0.358	1.695	1.824	0.614	2.559	5.558	1.803	1.628	7.117	2.047	2.542	2.642	2.583	1.939	1.376	3.138	2.831	2.553	0.891	2.615	1.472	1.106	2.210
9454	chr3	88589055	88590379	+	0	NA	Intergenic	B2_Mm1t|SINE|B2	10046	NM_025448	66256	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	7.157	1.260	0.822	1.942	7.790	6.157	4.411	5.005	3.090	3.586	1.050	2.085	3.727	5.337	2.108	2.724	4.268	3.181	nan	1.691	1.172	1.418	1.402	1.544	4.488
13724	chr7	130507987	130514104	+	0	NA	intron (NM_001029895, intron 3 of 11)	intron (NM_001029895, intron 3 of 11)	8535	NM_001136054	11907	Mm.216321	NM_013799	ENSMUSG00000030850	Ate1	AI225793|AW547406	arginyltransferase 1	protein-coding	5.068	7.273	2.812	5.361	2.967	1.140	4.479	7.186	3.497	4.565	3.168	1.266	4.589	5.780	7.646	6.784	4.273	6.683	1.728	1.305	0.799	1.848	1.300	1.433	7.291
7726	chr19	34657534	34658674	+	0	NA	Intergenic	ORR1A2|LTR|ERVL-MaLR	17215	NM_008331	15957	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	nan	2.562	2.975	2.266	3.864	2.267	1.442	nan	2.637	3.475	1.215	0.759	2.418	2.671	1.517	2.236	nan	3.069	0.708	1.502	1.128	0.284	1.119	0.942	2.270
15549	chr9	116081425	116085646	+	0	NA	Intergenic	Intergenic	91828	NM_029575	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	10.614	12.874	4.342	10.434	5.141	3.489	6.982	8.123	6.592	11.891	7.157	4.357	6.856	8.734	8.531	10.148	5.341	11.548	2.274	2.414	2.397	1.696	nan	1.759	14.452
1156	chr10	20232590	20234482	+	0	NA	intron (NM_001198635, intron 3 of 17)	intron (NM_001198635, intron 3 of 17)	25097	NM_001101561	621697	Mm.440587	NM_001101561		Rpl32l	EG621697|Gm6251	ribosomal protein L32-like	protein-coding	6.480	0.787	0.259	4.668	5.466	2.227	2.421	5.599	4.484	7.361	0.559	0.538	5.736	7.382	5.402	7.111	4.925	6.909	1.737	1.128	1.151	3.066	0.895	0.208	5.686
3614	chr12	92818995	92820597	+	0	NA	Intergenic	Intergenic	625027	NR_126436	75295	Mm.243878	NR_126436		4930559C10Rik	-	RIKEN cDNA 4930559C10 gene	ncRNA	7.483	6.865	3.790	3.815	3.378	1.581	3.610	3.044	3.949	3.608	2.176	2.302	5.228	4.643	4.857	6.273	5.457	5.470	2.078	1.168	0.907	1.560	0.939	0.273	5.416
3057	chr11	118091470	118111452	+	0	NA	intron (NM_001167746, intron 21 of 80)	B3|SINE|B2	27758	NM_001167746	69926	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	5.159	nan	6.689	5.495	3.080	1.983	nan	nan	4.021	4.850	2.593	1.821	2.652	4.198	3.705	4.217	2.717	nan	2.629	nan	2.741	3.077	2.040	1.752	4.295
12505	chr6	95516023	95522047	+	0	NA	intron (NM_001326558, intron 9 of 10)	intron (NM_001326558, intron 9 of 10)	173847	NM_001326558	20917	Mm.371585	NM_011507	ENSMUSG00000061838	Suclg2	AF171077|AW556404|D6Wsu120e|G-SCS|GTPSCS|SCS-betaG	succinate-Coenzyme A ligase, GDP-forming, beta subunit	protein-coding	0.290	1.705	1.099	0.404	0.158	0.063	0.434	0.528	0.456	0.294	0.371	0.164	0.202	0.318	nan	nan	0.505	0.528	nan	nan	0.488	4.878	0.619	0.267	0.321
11141	chr5	33127485	33128879	+	0	NA	intron (NM_019810, intron 2 of 14)	intron (NM_019810, intron 2 of 14)	23963	NM_019810	20537	Mm.25237	NM_019810	ENSMUSG00000011034	Slc5a1	Sglt1	solute carrier family 5 (sodium/glucose cotransporter), member 1	protein-coding	4.239	5.017	1.610	4.831	1.836	1.047	4.752	4.761	3.233	4.297	1.617	1.910	4.224	4.967	5.153	6.545	5.267	4.067	4.241	1.777	2.619	5.159	2.733	2.820	5.960
7026	chr18	12073032	12076460	+	0	NA	intron (NM_001289667, intron 3 of 12)	intron (NM_001289667, intron 3 of 12)	46791	NR_110356	338363	Mm.271567	NM_178801	ENSMUSG00000049411	Tmem241	6030446N20Rik	transmembrane protein 241	protein-coding	7.131	1.109	0.631	5.965	4.273	1.844	1.887	6.373	4.146	6.165	3.040	1.611	4.079	6.228	4.163	6.452	4.615	6.362	1.178	1.139	0.665	1.350	1.488	0.940	7.630
3812	chr13	3764044	3787992	+	0	NA	Intergenic	Intergenic	28300	NM_027416	70405	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	4.658	0.891	0.548	2.743	2.767	1.296	2.293	4.056	3.706	4.307	3.924	1.913	2.959	5.478	3.872	3.882	2.526	4.340	1.136	1.083	0.809	1.117	0.613	0.382	3.692
10851	chr4	144544563	144555019	+	0	NA	Intergenic	Intergenic	15343	NM_001085542	627085	Mm.457899	NM_001085542	ENSMUSG00000078506	Gm13124	OTTMUSG00000010546	predicted gene 13124	protein-coding	5.705	nan	0.716	4.271	6.428	3.850	4.790	7.072	5.613	7.225	3.589	2.809	5.704	8.099	5.650	7.255	4.200	6.700	1.791	1.379	1.020	2.100	2.111	1.527	4.024
9536	chr3	95428107	95429875	+	0	NA	intron (NR_033637, intron 2 of 2)	intron (NR_033637, intron 2 of 2)	1642	NR_033637	100043305	Mm.412052	NR_033637		Gm4349	-	SET domain, bifurcated 1 pseudogene	pseudo	7.079	9.158	4.413	7.151	5.884	3.657	8.117	6.665	5.475	5.674	nan	2.955	6.120	9.116	7.572	7.908	6.460	6.245	4.321	3.066	2.379	4.559	3.768	3.352	8.496
10009	chr4	42929542	42932188	+	0	NA	intron (NM_001346526, intron 2 of 8)	B4|SINE|B4	13614	NM_172690	230085	Mm.240965	NM_172690	ENSMUSG00000036062	Phf24	GINIP|N28178	PHD finger protein 24	protein-coding	nan	0.618	0.252	3.061	0.798	0.518	0.485	1.869	1.917	4.167	0.168	0.124	1.383	0.928	3.299	5.123	1.493	5.487	1.285		0.334	1.308	0.268	0.145	8.726
9310	chr3	52706736	52708815	+	0	NA	Intergenic	Intergenic	-31949	NR_038079	329639	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	2.725	0.582	0.416	2.856	1.768	0.485	2.739	2.122	3.376	4.163	1.522	0.414	5.010	4.810	4.279	3.089	1.844	5.112	1.106	0.443	0.084	0.621	0.649	0.225	2.564
3233	chr12	25561080	25563261	+	0	NA	Intergenic	Intergenic	432996	NR_045844	432641	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	2.193	0.411	0.390	1.000	0.499	0.354	0.618	0.951	2.017	1.277	6.313	2.988	1.357	1.761	1.380	2.511	1.620	2.064	1.081	0.999	0.443	2.076	0.675	0.390	1.498
5023	chr15	7163982	7167566	+	0	NA	intron (NM_001113386, intron 6 of 16)	intron (NM_001113386, intron 6 of 16)	25232	NM_013584	16880	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	5.985	1.333	0.816	3.372	2.492	1.275	6.716	6.941	4.524	5.210	1.892	0.894	6.085	5.656	4.400	5.922	5.392	5.758	0.866	0.877	0.602	0.841	0.710	0.731	6.829
7295	chr18	61437263	61440585	+	0	NA	Intergenic	ORR1F|LTR|ERVL-MaLR	-38493	NM_133249	170826	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	5.681	nan	0.206	nan	3.612	2.354	6.174	7.137	4.242	4.572	3.829	2.848	6.116	6.622	4.303	4.873	3.126	5.905	nan	0.339	0.443	nan	0.600	0.382	4.061
13991	chr8	11170720	11175538	+	0	NA	Intergenic	Intergenic	-139676	NM_009932	12827	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	1.705	2.131	1.156	1.420	1.757	0.703	1.755	3.605	1.333	1.399	1.064	0.562	2.005	2.643	2.918	4.651	2.096	2.255	1.314	1.744	0.993	5.424	1.295	0.811	2.462
5012	chr15	6336303	6339146	+	0	NA	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	37935	NM_001008702	13132	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	10.024	1.122	0.461	5.061	3.089	1.807	8.030	5.617	4.040	4.429	2.820	1.342	3.277	4.999	4.679	3.908	7.833	3.700	1.058	1.282	1.940	0.658	0.417	0.670	6.293
13741	chr7	133645150	133647627	+	0	NA	intron (NM_178115, intron 6 of 24)	intron (NM_178115, intron 6 of 24)	8713	NM_178115	214764	Mm.174044	NM_145995	ENSMUSG00000039990	Edrf1	2700050L05Rik|AU022667|AW558805	erythroid differentiation regulatory factor 1	protein-coding	12.750	18.928	5.588	14.148	7.853	5.254	12.165	14.032	5.938	17.218	9.912	5.255	11.715	14.834	12.261	13.011	8.882	11.678	8.137	5.282	5.493	7.910	5.699	7.157	19.554
15782	chrX	98568111	98576709	+	0	NA	intron (NM_001313755, intron 20 of 23)	intron (NM_001313755, intron 20 of 23)	318615	NM_052976	94190	Mm.33536	NM_052976	ENSMUSG00000031214	Ophn1	C130037N19Rik|Wtgr	oligophrenin 1	protein-coding	2.939	0.302	0.288	0.452	0.713	0.402	2.704	4.300	1.541	1.526	0.622	0.810	3.192	2.928	3.170	2.770	3.132	1.556	0.713	0.696	0.566	0.557	0.382	0.484	3.343
1698	chr10	106559591	106562470	+	0	NA	intron (NM_001205341, intron 3 of 31)	MER2|DNA|TcMar-Tigger	40025	NR_131027	75833	Mm.159596	NR_131026		4930532I03Rik	-	RIKEN cDNA 4930532I03 gene	ncRNA	3.898	0.529	0.457	3.342	1.375	0.914	3.818	5.990	2.780	2.993	0.344	0.419	3.538	5.500	5.244	6.340	4.726	4.544	2.144	3.571	1.145	5.337	2.532	2.497	4.557
10524	chr4	125917245	125920350	+	0	NA	intron (NR_015560, intron 2 of 5)	intron (NR_015560, intron 2 of 5)	3513	NR_015560	72395	Mm.112888	NR_015560	ENSMUSG00000085562	2610028E06Rik	BB043107	RIKEN cDNA 2610028E06 gene	ncRNA	2.309	1.143	0.628	2.101	1.294	0.842	2.252	2.736	1.438	1.416	1.024	0.314	1.660	2.668	2.252	3.119	1.413	2.588	0.724	0.705	0.549	1.010	0.699	0.397	5.771
12289	chr6	66946348	66949935	+	0	NA	intron (NM_001177560, intron 3 of 4)	ORR1B2|LTR|ERVL-MaLR	51250	NM_001177558	14701	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	2.774	1.716	0.898	1.833	1.813	1.423	4.651	3.526	2.902	2.361	1.711	0.832	4.007	4.569	5.868	6.818	4.502	4.281	0.704	0.480	0.342	0.718	0.441	0.344	3.408
4533	chr14	25025286	25027079	+	0	NA	Intergenic	Intergenic	117059	NR_045718	75862	Mm.109191	NR_045718		4930572O13Rik	-	RIKEN cDNA 4930572O13 gene	ncRNA	2.411	0.755	0.622	1.821	1.865	0.521	3.428	6.111	2.313	2.650	3.218	2.351	2.488	3.948	4.584	nan	nan	4.326	1.564	0.531	0.452	nan	0.919	1.029	5.352
7329	chr18	65209895	65214664	+	0	NA	intron (NM_001114386, intron 30 of 30)	intron (NM_001114386, intron 30 of 30)	-36582	NR_029600	387231		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	6.312	1.196	0.498	4.065	4.718	2.087	4.915	7.212	4.311	5.276	4.676	2.288	5.747	5.996	4.692	6.524	4.080	7.766	1.011	0.701	0.395	1.086	1.572	0.963	5.762
8041	chr2	26499398	26503462	+	0	NA	intron (NM_008714, intron 2 of 33)	intron (NM_008714, intron 2 of 33)	2392	NM_008714	18128	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	3.213	0.950	0.337	1.234	0.779	0.289	2.380	4.925	nan	1.719	0.900	0.493	3.291	4.760	2.755	4.556	1.858	2.260	0.388	0.549	0.177	0.601	0.493	0.163	4.971
9463	chr3	89079520	89085986	+	0	NA	Intergenic	B2_Mm2|SINE|B2	7278	NM_001083808	72296	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	11.540	3.359	0.952	10.953	7.840	3.551	14.872	12.230	7.183	12.370	7.397	3.730	14.279	16.824	11.194	13.416	9.100	12.147	nan	2.558	1.868	3.892	2.074	1.453	17.563
3820	chr13	5564097	5567129	+	0	NA	Intergenic	Intergenic	292479	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	3.800	0.774	0.488	3.664	5.327	2.734	2.697	5.090	4.758	5.126	1.190	2.182	3.353	7.256	4.308	3.846	2.604	4.743	0.837	0.831	0.485	0.624	1.702	0.889	1.914
7227	chr18	49914792	49916625	+	0	NA	intron (NM_001081371, intron 29 of 42)	B3|SINE|B2	-63719	NM_001177760	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|ENSMUSG00000073567|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	7.183	12.080	5.735	8.012	5.697	5.062	5.720	8.312	5.943	10.381	5.746	4.270	8.749	7.519	8.212	7.544	6.954	8.585	4.639	3.159	4.508	4.475	2.754	4.159	10.670
7640	chr19	23100440	23104592	+	0	NA	Intergenic	RLTR20C1_MM|LTR|ERVK	-38710	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	5.397	1.013	1.080	3.577	7.237	5.953	6.266	7.094	2.982	4.003	nan	1.024	4.019	8.105	4.415	3.996	6.839	3.474	nan	1.182	1.109	0.620	nan	1.120	4.590
57	chr1	23206387	23211474	+	0	NA	Intergenic	B3A|SINE|B2	-63339	NR_029533	387225		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	8.963	nan	0.725	6.396	2.715	1.399	5.435	3.686	5.486	4.622	4.168	1.865	7.372	5.393	4.954	9.131	6.015	6.825	0.821	0.778	0.439	0.653	0.429	0.244	3.777
9752	chr3	121422393	121426692	+	0	NA	Intergenic	PB1D9|SINE|Alu	-1999	NM_028044	71994	Mm.275555	NM_028044	ENSMUSG00000053931	Cnn3	1600014M03Rik|C85854|Calpo3	calponin 3, acidic	protein-coding	4.411	1.597	0.539	5.016	4.247	2.918	6.269	8.831	4.645	6.252	3.284	4.512	7.807	9.221	6.008	6.029	5.168	6.996	1.806	1.218	0.868	1.980	nan	1.474	6.608
13761	chr7	134146241	134172116	+	0	NA	intron (NM_007400, intron 2 of 22)	intron (NM_007400, intron 2 of 22)	65919	NM_007400	11489	Mm.439714	NM_007400	ENSMUSG00000054555	Adam12	Mltna	a disintegrin and metallopeptidase domain 12 (meltrin alpha)	protein-coding	5.314	nan	2.670	5.619	3.362	2.656	4.482	7.362	nan	5.743	3.990	2.772	4.397	5.818	5.084	5.206	3.596	5.111	4.440	3.322	3.650	5.703	3.459	3.214	7.354
3790	chr12	117819123	117821632	+	0	NA	Intergenic	Intergenic	-23484	NM_146040	217946	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	3.712	1.029	0.712	2.886	2.800	1.349	3.883	4.054	3.511	4.320	1.270	2.326	3.071	4.741	3.098	4.583	2.821	4.370	5.009	3.389	1.354	4.801	5.505	2.870	4.387
3660	chr12	103519768	103528012	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	-8675	NM_028980	74521	Mm.248619	NM_028980	ENSMUSG00000021209	Ppp4r4	8430415E04Rik|mKIAA1622	protein phosphatase 4, regulatory subunit 4	protein-coding	7.951	2.228	0.717	9.288	3.750	1.815	3.286	3.785	3.441	5.445	4.624	1.592	4.080	6.169	4.703	5.578	3.641	6.990	2.835	1.833	1.638	3.705	2.498	1.645	11.201
3435	chr12	75330245	75340350	+	0	NA	intron (NM_023275, intron 1 of 4)	intron (NM_023275, intron 1 of 4)	26984	NM_023275	80837	Mm.27467	NM_023275	ENSMUSG00000046768	Rhoj	1110005O19Rik|AW210585|Arhj|TC10L|TCL	ras homolog family member J	protein-coding	0.355	0.552	0.224	0.245	0.095	0.012	0.269	0.336	0.388	0.332	0.225	0.234	0.212	nan	0.290	nan	0.468	0.604	2.910	1.522	0.939	7.338	1.088	0.782	0.689
6605	chr17	36002055	36008543	+	0	NA	TTS (NM_008207)	TTS (NM_008207)	10795	NR_015618	77810	Mm.483143	NR_015618		A930015D03Rik	-	RIKEN cDNA A930015D03 gene	ncRNA	11.494	16.653	7.599	11.489	7.653	3.562	13.154	9.045	5.455	8.750	10.809	5.236	5.580	10.714	7.491	7.192	5.141	6.733	4.218	5.966	3.948	4.504	5.123	3.832	12.645
3307	chr12	41284388	41287116	+	0	NA	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	200305	NM_001271708	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	6.989	1.690	1.312	3.993	4.608	2.296	3.507	5.121	3.673	3.231	2.162	1.746	2.950	4.810	3.823	3.654	4.074	3.846	nan	1.412	0.644	0.787	0.573	0.388	3.377
7973	chr2	13458345	13459531	+	0	NA	intron (NM_001081084, intron 15 of 66)	intron (NM_001081084, intron 15 of 66)	32938	NM_001081084	65969	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	5.075	1.516	0.503	2.692	1.624	0.677	2.342	3.189	2.588	2.402	1.553	1.529	2.837	2.994	2.556	3.213	3.612	3.506	0.519	0.899	0.593	0.641	0.180	0.700	2.048
35	chr1	16677996	16679516	+	0	NA	TTS (NM_027415)	TTS (NM_027415)	-9700	NM_001159711	17087	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	10.312	10.979	6.096	8.104	7.499	4.858	8.659	4.990	5.116	5.166	4.859	3.410	8.270	10.134	8.166	8.673	6.185	6.501	4.644	4.004	3.766	4.322	3.393	2.292	5.940
12921	chr7	13550559	13552690	+	0	NA	Intergenic	Intergenic	19443	NM_001080942	77684	Mm.190482	NM_001080942	ENSMUSG00000078800	Bsph2	9230107M04Rik|Bsph2a	binder of sperm protein homolog 2	protein-coding	6.349	9.286	3.889	8.167	3.797	3.215	6.805	8.303	5.636	6.447	3.915	3.091	6.619	6.311	9.188	9.816	5.355	8.870	4.005	3.201	4.093	5.073	2.879	3.837	11.705
9052	chr2	169213334	169216928	+	0	NA	Intergenic	B4A|SINE|B4	236862	NR_040326	75508	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	0.220	0.361	0.205	0.422	0.185	0.034	0.401	0.672	0.433	0.206	0.327	0.484	0.142	nan	0.329	0.587	0.406	nan	5.042	1.863	1.171	3.943	3.313	2.187	nan
2453	chr11	74738355	74741370	+	0	NA	Intergenic	B1_Mur4|SINE|Alu	-15478	NM_013625	18472	Mm.397111	NM_013625	ENSMUSG00000020745	Pafah1b1	LIS-1|Lis1|MMS10-U|Mdsh|Ms10u|Pafaha	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	protein-coding	7.082	7.573	3.421	7.084	4.644	3.653	6.174	6.599	5.488	8.514	5.745	3.948	6.968	8.548	6.748	7.721	6.085	7.566	4.645	2.365	nan	4.977	2.732	2.720	8.481
6133	chr16	55816074	55821122	+	0	NA	intron (NM_001159395, intron 5 of 12)	intron (NM_001159395, intron 5 of 12)	3540	NM_001159394	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	5.121	5.849	2.587	6.623	3.045	2.371	3.156	4.768	3.966	3.580	7.668	6.668	4.390	3.813	5.276	5.588	4.170	4.273	nan	2.648	1.665	3.342	7.440	5.718	6.118
13813	chr7	137782866	137793247	+	0	NA	Intergenic	Intergenic	350382	NR_033611	620016	Mm.388932	NR_033611	ENSMUSG00000100863	Gm12669	OTTMUSG00000007920	glutaredoxin 3 pseudogene	pseudo	5.114	nan	0.499	5.779	4.613	2.550	5.962	7.873	nan	6.146	4.595	3.082	8.236	9.196	6.931	6.641	4.377	7.368	0.892	0.684	0.520	1.325	0.595	0.606	7.867
13922	chr7	150542168	150544165	+	0	NA	Intergenic	Intergenic	5228331	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	nan	nan	0.230	2.165	4.735	3.054	2.484	3.039	2.330	3.632	1.427	1.077	2.699	5.743	2.335	1.745	1.906	2.673	0.608	0.402	0.287	0.486	nan	0.643	1.736
2827	chr11	102177493	102182714	+	0	NA	intron (NM_172947, intron 2 of 4)	intron (NM_172947, intron 2 of 4)	5153	NM_172947	268490	Mm.259079	NM_172947	ENSMUSG00000020922	Lsm12	1110032E16Rik|1110059P07|2600001B17Rik	LSM12 homolog	protein-coding	11.603	20.814	7.188	16.308	7.726	6.612	11.846	10.943	9.402	23.876	10.584	7.361	9.795	13.962	11.719	14.521	9.891	13.648	8.787	4.696	7.853	10.461	5.973	10.432	20.567
665	chr1	136672836	136675094	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-9431	NR_045324	100503460	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	3.825	0.973	0.340	2.864	2.265	1.358	2.401	3.281	3.349	6.117	2.164	1.269	3.676	5.831	4.101	4.656	3.389	3.666	0.779	0.527	0.779	0.451	0.227	0.127	4.390
8997	chr2	165854761	165857424	+	0	NA	intron (NM_027230, intron 2 of 23)	intron (NM_027230, intron 2 of 23)	2081	NM_001252585	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	6.821	9.593	5.030	5.545	4.152	2.873	5.821	7.657	3.598	4.861	3.496	2.999	5.232	5.695	4.361	6.347	7.273	4.140	7.067	3.947	3.072	4.873	5.552	3.976	5.972
9244	chr3	37684166	37688037	+	0	NA	Intergenic	Intergenic	38259	NM_198657	381438	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	6.065	0.810	0.641	2.058	6.386	3.661	6.378	4.731	3.809	3.861	2.541	1.039	6.679	7.456	4.013	7.037	6.811	5.354	nan	1.382	1.235	nan	1.240	1.279	6.271
2758	chr11	98943677	98948256	+	0	NA	intron (NM_001177303, intron 1 of 8)	intron (NM_001177303, intron 1 of 8)	6255	NM_001177303	19401	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.715	nan	0.411	0.700	0.533	0.252	1.786	1.296	1.276	0.700	7.118	3.549	0.829	1.319	0.741	0.917	nan	0.685	0.451	nan	0.575	0.656	nan	nan	0.633
1476	chr10	79399232	79406379	+	0	NA	Intergenic	L1Md_F3|LINE|L1	46214	NM_001101572	624845	Mm.469866	NM_001101572	ENSMUSG00000091468	Vmn2r82	EG624845	vomeronasal 2, receptor 82	protein-coding	2.746	12.137	4.179	nan	1.619	0.855	1.354	1.922	1.101	1.811	0.899	0.379	1.232	1.936	nan	2.309	1.651	2.347	nan	0.877	1.307	0.974	0.995	1.162	3.492
1207	chr10	34001096	34003456	+	0	NA	intron (NM_025614, intron 4 of 6)	intron (NM_025614, intron 4 of 6)	-7221	NR_015526	414093	Mm.156915	NR_015526		A830082N09Rik	Gm17567	RIKEN cDNA A830082N09 gene	ncRNA	9.764	11.490	4.263	10.857	4.570	1.882	6.522	7.507	5.120	8.358	5.477	3.198	7.425	8.869	10.518	11.059	7.212	8.666	5.853	3.716	2.531	6.852	4.170	3.892	13.853
9203	chr3	28207203	28208345	+	0	NA	Intergenic	Lx7|LINE|L1	-55440	NM_001163007	665113	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	1.982	0.270	0.115	1.304	0.628	0.883	2.714	2.115	2.098	0.768	0.386	1.201	2.427	4.241	2.609	1.637	1.666	2.961	0.546	0.791	0.338	0.842	0.774	0.251	0.830
8405	chr2	84368013	84372062	+	0	NA	exon (NM_018782, exon 8 of 16)	exon (NM_018782, exon 8 of 16)	55229	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	6.544	1.696	0.730	4.087	1.923	1.764	4.001	3.004	5.347	5.000	2.625	2.643	5.319	4.300	4.233	5.914	4.078	7.547	0.840	1.087	0.969	0.858	0.621	0.616	4.911
2641	chr11	93855276	93862379	+	0	NA	TTS (NM_001013375)	TTS (NM_001013375)	26939	NM_001013375	217109	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	7.119	nan	1.738	7.798	6.867	4.777	5.491	7.536	5.417	7.914	4.707	2.735	5.736	9.179	6.766	8.573	nan	7.033	3.010	nan	2.495	2.898	nan	nan	6.809
3007	chr11	116475743	116486362	+	0	NA	intron (NM_026364, intron 3 of 9)	intron (NM_026364, intron 3 of 9)	9294	NM_026364	67763	Mm.25125	NM_026364	ENSMUSG00000015869	Prpsap1	5730409F23Rik|PAP39	phosphoribosyl pyrophosphate synthetase-associated protein 1	protein-coding	8.158	4.461	1.005	9.396	4.930	2.553	nan	7.184	4.364	6.642	4.249	2.530	6.002	9.370	7.639	9.548	5.370	8.315	1.160	nan	1.234	2.102	0.690	0.511	11.319
904	chr1	176837366	176839038	+	0	NA	intron (NM_029756, intron 5 of 17)	intron (NM_029756, intron 5 of 17)	-2069	NR_037996	15365	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	4.328	0.369	0.076	2.537	2.679	1.440	0.940	5.113	2.241	4.873	1.258	0.795	3.903	3.951	3.783	3.064	3.655	5.412	1.047	0.745	0.146	1.077	0.922	0.715	2.358
6739	chr17	56030614	56032691	+	0	NA	intron (NM_001252471, intron 1 of 8)	B4|SINE|B4	4985	NM_013664	20405	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	nan	4.252	1.960	4.301	2.827	1.766	4.152	3.176	3.268	3.299	2.622	2.360	3.923	5.045	4.137	4.477	3.762	4.445	2.082	2.318	1.534	2.185	2.455	1.962	3.983
8238	chr2	50408859	50410232	+	0	NA	intron (NR_040362, intron 1 of 2)	intron (NR_040362, intron 1 of 2)	112735	NR_040362	100502624	Mm.382825	NR_040361	ENSMUSG00000085862	Gm13483	OTTMUSG00000012382	predicted gene 13483	ncRNA	0.928	0.797	0.528	0.189	0.233	0.176	1.934	1.967	0.490	nan	5.138	0.594	0.169	0.452	1.227	0.883	1.570	0.396	0.567	0.435	0.401	0.400	0.065	0.137	0.968
14077	chr8	24298806	24306620	+	0	NA	Intergenic	Intergenic	136233	NM_026931	69068	Mm.25775	NM_026931	ENSMUSG00000056313	1810011O10Rik	1110065B09Rik|AW121743|AW321058	RIKEN cDNA 1810011O10 gene	protein-coding	4.144	nan	0.638	2.045	2.274	1.832	2.767	6.954	2.412	2.407	2.373	1.174	4.505	5.158	3.671	3.700	4.314	3.968	1.871	1.408	1.022	nan	1.266	1.166	3.105
12928	chr7	16628014	16642477	+	0	NA	Intergenic	Lx5b|LINE|L1	-20252	NM_172739	232906	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	7.181	14.828	7.575	6.476	4.370	2.688	5.722	8.310	4.083	6.239	5.421	2.939	5.901	6.901	5.881	5.718	4.733	5.853	3.361	2.597	2.386	3.405	2.569	2.463	8.171
9347	chr3	60319997	60321545	+	0	NA	Intergenic	Intergenic	-152059	NM_001253713	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	4.549	5.984	4.148	5.046	6.691	3.173	3.160	3.573	4.252	4.228	2.261	2.377	2.703	4.457	3.884	3.832	4.265	nan	2.034	2.352	1.120	1.097	2.179	1.855	3.065
15579	chr9	118903359	118905216	+	0	NA	Intergenic	Intergenic	-22249	NM_133710	69274	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	3.378	0.769	0.422	4.740	2.273	0.847	2.231	2.939	2.375	2.824	3.805	2.721	2.957	3.557	2.517	4.050	1.979	4.201	1.668	2.260	0.977	2.080	nan	0.892	4.460
15040	chr9	45918422	45920175	+	0	NA	exon (NM_008794, exon 11 of 17)	exon (NM_008794, exon 11 of 17)	-12387	NM_001310840	235315	Mm.3255	NM_178709	ENSMUSG00000042790	Rnf214	D130054N24Rik	ring finger protein 214	protein-coding	7.191	1.953	0.862	4.621	3.712	3.454	3.101	2.742	3.712	4.279	2.510	3.723	3.248	4.005	2.956	3.909	3.311	5.603	1.653	2.174	1.154	nan	1.140	0.646	3.557
12315	chr6	72188408	72196909	+	0	NA	Intergenic	Intergenic	42919	NM_153778	71093	Mm.87449	NM_153778	ENSMUSG00000037621	Atoh8	4933425C05Rik|Hath6|Math6|bHLHa21|okadin	atonal bHLH transcription factor 8	protein-coding	7.897	1.469	0.567	5.786	3.868	2.062	16.867	9.402	4.970	6.431	4.249	2.267	12.684	14.590	13.482	16.201	8.854	9.998	1.221	1.408	1.183	2.120	1.215	0.943	12.871
9884	chr3	152155257	152158906	+	0	NA	intron (NM_016867, intron 1 of 5)	L2|LINE|L2	8819	NM_016867	54120	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	1.203	0.769	0.453	1.361	0.472	0.303	1.696	1.094	0.787	1.203	0.994	0.774	0.700	1.460	1.396	1.212	0.928	1.334	1.951	2.226	1.896	4.533	1.756	1.192	1.245
2006	chr11	20148400	20150053	+	0	NA	Intergenic	B2_Mm1a|SINE|B2	-36275	NM_146243	66713	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	nan	12.498	3.138	8.011	1.992	2.165	4.713	4.424	3.764	7.868	3.075	2.507	5.233	5.996	6.904	8.138	4.337	6.018	4.663	1.408	2.277	5.881	1.949	2.668	10.778
8176	chr2	34924938	34929435	+	0	NA	Intergenic	B1_Mur4|SINE|Alu	-13210	NM_028716	74016	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	7.654	0.658	0.495	4.728	2.353	1.523	2.784	3.345	5.643	7.366	0.905	2.725	5.404	6.080	5.418	10.602	6.077	8.842	0.747	0.671	0.455	0.668	0.418	0.371	5.973
2245	chr11	58120301	58121649	+	0	NA	3' UTR (NM_001166670, exon 28 of 28)	3' UTR (NM_001166670, exon 28 of 28)	16822	NM_026949	69125	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	3.744	7.396	1.262	5.148	1.035	0.608	4.019	3.514	2.955	4.723	5.203	2.780	3.413	3.986	6.162	6.807	3.164	6.017	2.856	1.379	1.217	3.827	2.089	2.288	8.162
3178	chr12	8927538	8930618	+	0	NA	intron (NM_008640, intron 1 of 6)	L1MA6|LINE|L1	7771	NM_008640	17775	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	12.488	11.412	4.534	9.341	5.525	3.585	8.135	7.645	5.786	8.151	8.124	4.354	8.948	10.706	9.859	11.491	10.006	8.719	3.708	3.379	3.102	5.151	4.055	3.392	14.582
2130	chr11	48642447	48644921	+	0	NA	Intergenic	Intergenic	-156676	NM_008143	14694	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	2.841	0.908	0.795	2.603	3.837	2.627	1.890	nan	2.536	2.856	0.728	0.324	1.509	4.544	1.736	nan	2.135	nan	nan	1.054	0.508	nan	nan	0.513	1.408
15653	chrX	6764116	6765678	+	0	NA	Intergenic	Lx2B2|LINE|L1	-108587	NM_177914	331374	Mm.392752	NM_177914	ENSMUSG00000062393	Dgkk	Gm360	diacylglycerol kinase kappa	protein-coding	4.053	0.625	0.339	1.466	2.418	1.597	3.807	2.777	1.875	1.894	2.515	2.364	4.111	4.132	3.950	4.963	2.938	3.561	1.645	1.256	0.471	2.470	1.304	0.740	4.050
13690	chr7	125838684	125852647	+	0	NA	intron (NM_001081022, intron 15 of 27)	intron (NM_001081022, intron 15 of 27)	137789	NM_001081022	233865	Mm.274389	NM_001081022	ENSMUSG00000032743	D430042O09Rik	Kiaa0556	RIKEN cDNA D430042O09 gene	protein-coding	5.729	2.049	1.036	5.585	5.601	4.423	5.999	7.102	6.211	7.752	3.654	2.816	8.511	9.274	nan	7.826	6.470	5.857	1.960	1.639	1.715	2.672	2.246	2.409	5.184
1028	chr1	193045721	193046655	+	0	NA	Intergenic	Lx7|LINE|L1	-10413	NM_181546	329324	Mm.76710	NM_181546	ENSMUSG00000016200	Syt14	B230320I09Rik|sytXIV	synaptotagmin XIV	protein-coding	2.743	1.405	0.392	1.264	2.471	1.635	1.604	2.832	1.804	2.280	1.830	1.743	2.225	3.194	2.788	6.617	2.431	3.417	1.814	1.217	0.262	2.719	nan	0.759	2.443
13465	chr7	105469351	105471070	+	0	NA	Intergenic	Intergenic	11987	NM_028444	109042	Mm.3124	NM_028444	ENSMUSG00000037060	Prkcdbp	3110015B12Rik|6330514M23Rik|SRBC	protein kinase C, delta binding protein	protein-coding	5.479	1.994	1.663	2.977	3.160	1.323	1.501	4.250	2.128	2.724	2.823	1.785	1.962	4.200	1.930	2.499	2.368	2.418	nan	1.969	0.937	1.153	1.124	0.786	2.750
198	chr1	57900817	57911663	+	0	NA	intron (NM_001164566, intron 7 of 11)	intron (NM_001164566, intron 7 of 11)	60669	NM_001164566	67198	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	2.571	1.333	0.716	2.174	1.051	0.480	1.652	1.721	2.123	1.545	0.733	1.097	2.762	1.385	1.864	nan	2.120	2.777	2.969	1.829	1.412	6.373	1.270	0.879	1.438
14732	chr8	125165585	125167526	+	0	NA	intron (NM_174854, intron 9 of 12)	B1_Mus1|SINE|Alu	112360	NM_174854	244667	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	1.070	1.319	0.149	nan	0.738	0.427	nan	1.033	0.913	1.030	0.298	0.373	0.966	1.123	nan	1.474	1.282	nan	nan	4.292	2.679	4.982	2.130	nan	1.748
13238	chr7	65881583	65883206	+	0	NA	intron (NM_011048, intron 1 of 21)	intron (NM_011048, intron 1 of 21)	20258	NM_011048	18553	Mm.294007	NM_011048	ENSMUSG00000030513	Pcsk6	C86343|Pace4|SPC4	proprotein convertase subtilisin/kexin type 6	protein-coding	4.261	0.840	1.162	2.876	2.876	1.259	2.426	3.555	3.055	3.027	1.598	1.391	2.029	3.717	3.622	4.141	3.208	2.723	0.841	1.462	0.762	0.513	0.766	0.467	2.285
2550	chr11	83680769	83701727	+	0	NA	Intergenic	Intergenic	-12808	NM_001081957	100034251	Mm.24097	NM_001081957	ENSMUSG00000069792	Wfdc17	Amwap|Gm11428|OTTMUSG00000000971	WAP four-disulfide core domain 17	protein-coding	5.660	0.716	0.429	nan	4.781	2.879	5.586	5.952	5.183	5.657	2.751	2.145	6.982	7.962	6.199	7.614	5.478	5.958	1.082	0.991	0.840	nan	0.860	0.749	nan
6240	chr16	94533750	94535599	+	0	NA	Intergenic	RSINE1|SINE|B4	-8045	NM_007834	13185	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	Down syndrome critical region gene 3	protein-coding	13.277	12.907	3.964	13.382	6.725	3.163	10.674	13.419	10.985	16.096	8.870	6.855	14.043	14.932	12.586	13.252	9.644	13.511	9.535	5.219	4.032	6.869	6.237	6.038	16.249
13250	chr7	71515831	71519375	+	0	NA	Intergenic	Intergenic	-392092	NR_130995	78156	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	4.221	2.479	1.024	4.793	2.498	2.098	3.618	6.553	4.475	3.578	2.325	2.022	6.788	6.016	6.238	6.390	5.676	5.039	2.329	2.092	2.564	2.591	2.005	1.946	5.243
9913	chr4	8722668	8732801	+	0	NA	intron (NM_001277149, intron 1 of 37)	intron (NM_001277149, intron 1 of 37)	37328	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.781	2.766	1.490	1.118	0.489	0.229	0.321	nan	0.739	0.606	0.393	0.285	0.241	0.425	0.591	0.724	0.465	0.959	5.065	nan	1.989	7.839	3.027	2.088	0.639
13576	chr7	117301445	117308886	+	0	NA	Intergenic	Intergenic	-75814	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	3.843	7.022	5.268	3.691	5.440	4.366	3.316	4.567	3.150	2.667	2.616	2.054	3.547	4.055	4.232	3.607	3.394	4.254	1.689	1.305	1.230	1.558	1.126	1.111	3.736
13202	chr7	53175266	53180411	+	0	NA	Intergenic	Intergenic	714051	NR_105746	102466619		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	8.022	10.609	4.067	6.815	4.801	2.613	6.488	10.633	4.039	5.670	4.979	3.325	7.884	10.253	7.755	7.891	6.494	6.002	4.038	5.145	2.484	4.762	4.661	2.843	8.482
12443	chr6	90651102	90658568	+	0	NA	Intergenic	B4|SINE|B4	35589	NM_001037493	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	2.679	2.104	0.916	4.177	2.144	1.041	1.434	2.199	2.302	2.481	0.965	1.204	1.836	1.955	2.763	6.313	2.332	3.541	nan	1.819	1.586	5.718	4.085	2.874	4.520
3713	chr12	109935411	109941172	+	0	NA	Intergenic	L1M4|LINE|L1	190413	NR_037233	100499517		NR_037233	ENSMUSG00000093351	Mir3072	mir-3072|mmu-mir-3072	microRNA 3072	ncRNA	1.478	0.586	0.400	nan	0.370	0.143	1.551	6.094	nan	nan	0.884	1.046	1.608	nan	1.770	2.832	1.310	1.505	1.908	1.135	1.092	3.074	3.171	2.374	nan
913	chr1	179386308	179391969	+	0	NA	intron (NM_027188, intron 5 of 11)	intron (NM_027188, intron 5 of 11)	128865	NM_027188	69726	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	1.579	0.565	0.160	0.725	0.417	0.303	1.865	2.030	1.054	0.990	0.462	0.739	1.887	nan	1.379	2.175	1.220	1.691	4.539	3.134	1.832	8.114	1.393	0.976	1.109
7007	chr18	7619567	7621530	+	0	NA	intron (NM_001081287, intron 1 of 16)	intron (NM_001081287, intron 1 of 16)	6315	NM_001081287	75739	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	3.465	0.852	0.598	1.864	3.249	2.765	1.649	3.324	2.246	2.019	1.684	1.124	2.449	3.881	2.090	2.844	2.464	2.172	1.119	2.023	1.141	1.342	2.099	1.220	2.699
3983	chr13	37652376	37656029	+	0	NA	Intergenic	Intergenic	-171836	NM_026830	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	4.686	2.420	0.754	3.956	2.456	1.008	3.188	4.863	3.935	5.758	2.977	1.897	3.729	6.535	4.029	5.629	2.950	nan	2.491	2.466	1.511	5.481	1.606	0.929	nan
12390	chr6	86573547	86574382	+	0	NA	Intergenic	Intergenic	46563	NR_037961	72012	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	0.825	0.898	0.316	1.413	0.716	0.646	3.939	2.482	1.399	1.009	1.138	0.721	1.677	3.469	4.051	5.218	1.296	2.165	nan	0.468	0.498	2.467	0.315	0.173	3.650
4313	chr13	98414301	98417114	+	0	NA	Intergenic	Intergenic	19358	NR_045498	70090	Mm.410857	NR_045498	ENSMUSG00000099446	2310005E17Rik	-	RIKEN cDNA 2310005E17 gene	ncRNA	3.499	0.778	0.281	2.532	1.703	1.148	3.654	4.030	3.287	3.390	3.752	1.517	3.700	4.514	4.601	4.885	2.405	3.977	1.531	0.909	0.727	1.048	1.279	0.858	3.669
2468	chr11	75344097	75355981	+	0	NA	intron (NM_001102611, intron 2 of 10)	intron (NM_001102611, intron 2 of 10)	1606	NM_001102611	319822	Mm.340377	NM_177009	ENSMUSG00000018809	Smyd4	G430029E23Rik	SET and MYND domain containing 4	protein-coding	7.689	9.183	3.318	8.124	5.554	3.499	6.034	5.813	5.809	7.815	4.311	2.310	5.666	8.988	7.845	8.852	6.381	7.103	3.032	2.633	nan	3.812	2.348	2.120	9.540
4436	chr13	115888936	115893360	+	0	NA	Intergenic	IAPEz-int|LTR|ERVK	418540	NM_021459	16392	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	6.630	2.309	0.868	6.295	2.080	0.691	4.327	3.499	2.201	3.048	1.340	0.767	3.599	3.139	4.946	4.102	2.190	4.859	0.959	1.160	0.525	1.338	0.667	0.490	nan
15351	chr9	82722505	82725025	+	0	NA	Intergenic	Intergenic	-106041	NM_001168240	65099	Mm.41415	NM_022986	ENSMUSG00000032251	Irak1bp1	4921528N06Rik|AI851240|Aabp3|Aip70|Simpl	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding	2.073	13.530	7.923	3.667	1.263	1.077	1.208	1.077	1.489	3.156	0.758	0.719	1.275	1.666	2.962	3.450	1.725	3.120	4.220	nan	3.798	4.825	4.927	4.650	nan
12515	chr6	97407105	97408606	+	0	NA	intron (NM_001346639, intron 4 of 22)	MT2B|LTR|ERVL	51431	NM_001346639	232288	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	4.475	3.249	1.393	4.155	3.166	2.132	2.152	1.252	2.694	3.369	1.322	1.325	1.134	1.902	nan	1.960	1.478	2.535	1.680	nan	2.791	1.131	1.814	2.139	3.028
14697	chr8	123034613	123039329	+	0	NA	intron (NM_001081379, intron 1 of 12)	B1_Mus1|SINE|Alu	5313	NR_037865	77087	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.811	nan	0.388	nan	0.383	0.339	nan	1.521	0.669	0.868	0.555	0.173	0.697	0.786	nan	1.269	0.800	nan	nan	1.136	1.481	4.214	0.880	0.738	nan
2183	chr11	52260455	52264706	+	0	NA	intron (NM_001313981, intron 3 of 10)	intron (NM_001313981, intron 3 of 10)	20015	NM_009331	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.424	0.588	0.596	0.667	0.532	0.259	2.620	nan	1.488	0.776	3.413	5.832	0.866	1.028	1.338	nan	0.537	nan	nan	0.373	0.433	nan	nan	0.286	0.627
1819	chr10	121995353	121997250	+	0	NA	intron (NM_001242411, intron 1 of 21)	intron (NM_001242411, intron 1 of 21)	51014	NM_001242411	117600	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	5.498	0.957	0.765	0.900	0.890	0.472	4.127	2.744	2.246	1.720	0.447	0.411	2.551	4.614	3.927	4.182	4.532	1.593	0.794	0.456	0.602	0.378	0.502	0.274	4.026
4801	chr14	67685626	67692641	+	0	NA	intron (NM_001110162, intron 13 of 14)	ORR1D2|LTR|ERVL-MaLR	26477	NM_001110162	108912	Mm.33831	NM_175384	ENSMUSG00000048922	Cdca2	2610311M19Rik|AI586158	cell division cycle associated 2	protein-coding	6.658	3.571	1.884	5.452	6.584	4.934	5.484	10.053	5.171	6.383	4.006	2.577	5.892	7.880	5.436	6.273	4.621	6.096	2.927	nan	2.286	2.373	2.919	3.116	6.354
1459	chr10	76998118	77000993	+	0	NA	Intergenic	Intergenic	-12440	NR_045882	100038479	Mm.387034	NR_045882	ENSMUSG00000074919	Gm10787	ENSMUSG00000074919	predicted gene 10787	ncRNA	5.529	9.800	6.468	nan	3.723	2.800	1.498	1.343	1.999	2.684	3.248	1.109	1.168	2.297	nan	2.091	1.942	1.987	nan	2.513	2.502	0.630	0.893	0.756	2.526
5761	chr16	4911724	4917720	+	0	NA	intron (NM_001252437, intron 5 of 16)	intron (NM_001252437, intron 5 of 16)	-24389	NM_001316715	66911	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	6.675	4.521	1.336	5.435	5.058	3.097	5.268	8.196	4.649	5.693	3.689	2.280	5.942	8.073	5.986	6.247	3.478	6.591	1.073	0.862	0.948	1.061	0.550	0.761	8.968
9211	chr3	30366704	30369659	+	0	NA	intron (NM_021442, intron 1 of 2)	intron (NM_021442, intron 1 of 2)	141306	NM_021442	14013	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	6.007	0.740	0.353	3.964	4.792	3.517	nan	1.284	5.756	6.554	1.309	1.167	8.150	8.377	nan	6.874	5.949	nan	0.462	0.610	0.527	0.814	0.868	0.357	6.437
5279	chr15	68077796	68079956	+	0	NA	Intergenic	Intergenic	179980	NM_001145888	380993	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	3.846	0.782	0.358	2.615	1.450	0.940	2.082	2.010	2.335	3.160	0.560	0.703	3.197	4.251	3.671	3.580	2.942	4.347	0.658	0.545	0.227	1.027	0.306	0.235	5.947
8958	chr2	164191473	164196280	+	0	NA	Intergenic	Intergenic	-3318	NM_138684	192200	Mm.6433	NM_138684	ENSMUSG00000042845	Wfdc12	Swam2|WAP2	WAP four-disulfide core domain 12	protein-coding	1.855	7.619	3.537	0.814	0.906	0.531	1.020	0.891	0.865	0.823	0.731	0.270	1.087	nan	0.748	1.360	1.148	nan	nan	2.455	1.704	2.938	1.347	0.735	nan
6292	chr17	4791126	4792797	+	0	NA	Intergenic	Intergenic	156981	NR_130984	75117	Mm.429393	NR_130984		4930517M08Rik	-	RIKEN cDNA 4930517M08 gene	ncRNA	3.288	0.747	0.233	2.171	1.544	0.604	3.820	2.566	2.302	1.851	0.948	0.805	4.075	3.828	4.813	5.732	4.750	3.141	nan	0.455	0.465	0.261	0.334	0.217	5.550
11098	chr5	30061797	30064068	+	0	NA	intron (NR_033402, intron 5 of 6)	intron (NR_033402, intron 5 of 6)	10693	NR_033402	22171	Mm.268395	NM_021288	ENSMUSG00000025747	Tyms	Ts	thymidylate synthase	protein-coding	10.786	13.987	5.047	13.154	6.652	3.672	9.526	10.399	7.486	11.069	9.711	5.113	9.063	11.902	11.424	11.798	7.456	11.268	5.338	3.548	2.863	6.882	4.128	5.025	13.961
10548	chr4	128627243	128628407	+	0	NA	Intergenic	RMER19B|LTR|ERVK	-9206	NM_205823	384059	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	2.013	1.059	0.957	1.927	2.690	1.562	1.359	0.562	1.181	1.553	0.364	0.600	1.880	3.583	1.986	2.456	2.410	2.009	1.719	1.313	1.396	2.165	1.420	1.125	4.321
15460	chr9	106164135	106168456	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-4634	NM_029896	77305	Mm.265125	NM_029896	ENSMUSG00000020257	Wdr82	9430077D24Rik|CDW5/WDR82	WD repeat domain containing 82	protein-coding	2.950	0.805	0.455	3.565	1.406	0.923	2.075	3.786	nan	nan	3.834	1.635	4.344	3.920	2.233	nan	2.244	nan	1.033	1.346	1.269	2.553	1.227	1.287	nan
13100	chr7	31336439	31339029	+	0	NA	Intergenic	Intergenic	24338	NM_001270541	100043326	Mm.479858	NM_001270541	ENSMUSG00000078754	Scgb2b3	Abpbg3|Gm4362	secretoglobin, family 2B, member 3	protein-coding	8.060	12.528	3.319	11.402	4.413	2.619	8.134	11.717	6.384	7.817	6.491	3.191	9.588	10.933	11.815	11.400	7.230	10.048	6.799	2.375	2.901	7.774	3.559	4.097	14.866
8437	chr2	91033480	91037200	+	0	NA	promoter-TSS (NM_009023)	promoter-TSS (NM_009023)	-287	NM_009023	19400	Mm.1272	NM_009023	ENSMUSG00000002104	Rapsn	43kDa|Nraps|Raps|rapsyn	receptor-associated protein of the synapse	protein-coding	7.365	2.639	1.393	4.495	3.902	2.215	7.603	8.817	3.310	5.473	1.849	1.844	5.774	7.584	5.395	7.463	7.152	5.430	1.030	2.319	1.222	1.449	2.203	1.689	7.705
5908	chr16	22893149	22906637	+	0	NA	TTS (NM_001276450)	TTS (NM_001276450)	-5507	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.940	0.643	0.445	0.443	0.323	0.212	0.812	1.724	0.640	nan	0.477	0.382	0.696	0.785	0.734	nan	0.595	1.079	5.629	3.063	1.936	7.199	3.752	2.926	0.938
6153	chr16	64877534	64880276	+	0	NA	Intergenic	RMER10A|LTR|ERVL	26820	NM_178647	106143	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	4.030	0.619	0.752	1.176	1.456	1.118	3.925	4.607	1.532	1.491	2.241	1.953	2.476	1.854	2.086	2.720	4.052	2.228	1.456	1.479	0.683	0.782	1.913	1.995	2.829
15384	chr9	90164251	90171692	+	0	NA	intron (NM_001326294, intron 1 of 22)	B4|SINE|B4	4993	NM_001311115	108153	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	6.384	4.453	2.060	4.752	3.021	1.548	5.101	6.519	4.444	6.077	3.340	2.245	5.850	5.900	5.682	7.816	4.745	6.231	1.292	1.673	1.443	1.438	1.528	1.440	9.809
2041	chr11	24026270	24033488	+	0	NA	Intergenic	Intergenic	-48177	NM_016707	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.404	9.225	4.342	nan	0.145	0.089	0.193	0.188	0.365	0.276	0.392	0.222	0.108	0.129	0.314	0.498	nan	0.490	0.369	0.309	0.272	0.488	0.278	0.146	0.420
1467	chr10	77919691	77921445	+	0	NA	intron (NM_138301, intron 24 of 33)	intron (NM_138301, intron 24 of 33)	-18032	NM_145152	237387	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	3.978	6.804	2.613	4.048	2.164	2.155	3.630	5.896	2.397	2.799	1.040	1.261	3.564	3.957	3.352	5.214	2.670	3.450	nan	1.500	0.905	1.094	0.846	1.028	4.493
4548	chr14	26264976	26328955	+	0	NA	Intergenic	MER5B|DNA|hAT-Charlie	34707	NM_001177539	100039293	Mm.429131	NM_001177539	ENSMUSG00000072672	Duxbl3	ENSMUSG00000072672|Gm10391	double homeobox B-like 3	protein-coding	5.622	6.546	2.337	5.757	4.075	1.972	4.790	9.451	4.012	5.589	3.991	2.264	4.891	7.634	6.287	nan	nan	nan	3.346	1.720	1.269	nan	2.297	1.754	8.449
15209	chr9	65426132	65428809	+	0	NA	Intergenic	Intergenic	-4697	NM_178933	330962	Mm.335247	NM_178933	ENSMUSG00000053862	Slc51b	Ostb	solute carrier family 51, beta subunit	protein-coding	6.921	13.362	4.032	7.769	2.748	1.125	2.587	3.097	3.373	4.815	3.462	1.364	2.590	5.004	nan	5.699	3.407	4.124	nan	2.934	2.097	3.715	3.638	2.602	6.614
4324	chr13	99693722	99697731	+	0	NA	Intergenic	URR1B|DNA|hAT-Charlie	-179124	NM_008634	17755	Mm.4173	NM_008634	ENSMUSG00000052727	Map1b	A230055D22|AI843217|LC1|MAP5|Mtap-5|Mtap1b|Mtap5	microtubule-associated protein 1B	protein-coding	7.084	9.496	3.069	9.485	7.796	6.537	5.343	7.074	7.277	11.121	6.200	5.055	7.016	9.272	8.087	8.779	4.413	8.394	5.468	2.194	3.637	6.087	3.605	4.850	11.022
13557	chr7	116709840	116712917	+	0	NA	Intergenic	B3|SINE|B2	207009	NM_001130479	53322	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	4.753	0.760	0.507	4.503	3.983	2.868	3.168	6.321	4.133	4.766	4.270	3.109	5.353	5.124	3.352	4.420	3.294	5.751	2.382	1.795	1.119	3.183	2.140	1.896	4.867
704	chr1	138579959	138584169	+	0	NA	intron (NM_001311148, intron 1 of 7)	L1MEg1|LINE|L1	37693	NM_021605	59125	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	10.560	6.409	4.640	4.791	8.662	6.592	8.528	5.603	5.175	4.523	4.911	2.610	6.247	8.168	4.682	6.782	5.551	5.017	2.827	3.188	3.199	2.319	2.235	2.491	5.300
5405	chr15	78436217	78438583	+	0	NA	intron (NM_001289671, intron 6 of 7)	intron (NM_001289671, intron 6 of 7)	8836	NR_110357	72844	Mm.390816	NM_001081367	ENSMUSG00000033287	Kctd17	2900008M13Rik|AA414907|AW742389|N28155	potassium channel tetramerisation domain containing 17	protein-coding	3.712	9.056	1.994	nan	0.612	0.194	3.999	5.807	1.608	nan	nan	1.985	3.522	nan	3.206	2.697	nan	2.566	1.645	1.402	0.510	2.636	1.044	0.659	2.896
1462	chr10	77083967	77090274	+	0	NA	intron (NM_009929, intron 5 of 41)	intron (NM_009929, intron 5 of 41)	26585	NM_001109991	12822	Mm.4352	NM_009929	ENSMUSG00000001435	Col18a1	-	collagen, type XVIII, alpha 1	protein-coding	8.439	7.624	2.394	nan	4.680	3.475	4.380	7.661	5.715	6.891	4.583	3.197	4.696	6.969	nan	7.139	4.807	8.403	nan	2.313	2.940	4.732	2.356	2.672	8.888
7060	chr18	21369215	21375675	+	0	NA	Intergenic	Intergenic	-72306	NM_001033445	381126	Mm.312276	NM_001033445	ENSMUSG00000042680	Garem1	C86169|Fam59a|Garem|Gm944|mKIAA4238	GRB2 associated regulator of MAPK1 subtype 1	protein-coding	nan	0.646	0.442	1.495	1.128	0.663	2.900	7.275	2.142	1.146	2.342	0.980	5.403	3.192	3.199	3.969	3.746	3.964	1.103	0.790	0.604	1.212	0.714	0.531	3.562
10068	chr4	47362631	47363985	+	0	NA	intron (NM_001312868, intron 1 of 8)	intron (NM_001312868, intron 1 of 8)	10086	NM_009370	21812	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	4.524	1.853	1.129	1.963	1.303	0.742	3.869	6.684	2.755	3.211	3.033	1.530	4.258	3.928	4.956	4.006	2.327	3.560	0.983	0.667	0.539	nan	0.812	0.372	3.018
9329	chr3	57429416	57431410	+	0	NA	intron (NM_145539, intron 2 of 4)	ID4_|SINE|ID	5003	NM_145539	229302	Mm.26618	NM_145539	ENSMUSG00000027801	Tm4sf4	Iltmp	transmembrane 4 superfamily member 4	protein-coding	5.798	0.606	0.285	nan	5.564	2.917	7.601	3.034	5.068	5.898	4.540	3.006	8.521	9.761	nan	nan	6.433	nan	0.664	0.641	0.554	0.721	0.911	0.499	6.586
12530	chr6	99116157	99127383	+	0	NA	intron (NM_001347345, intron 5 of 19)	L1MA6|LINE|L1	-93472	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	8.040	1.704	0.983	6.975	9.661	5.249	8.137	14.318	10.087	11.819	4.457	5.333	10.208	14.165	nan	11.015	8.114	9.976	nan	nan	1.585	4.188	2.891	1.779	6.185
12500	chr6	94622791	94627902	+	0	NA	intron (NM_008377, intron 6 of 18)	intron (NM_008377, intron 6 of 18)	-18931	NR_106008	102466992		NR_106008	ENSMUSG00000098531	Mir7041	Gm27872|mmu-mir-7041	microRNA 7041	ncRNA	2.004	1.683	0.747	1.421	0.604	0.402	2.297	4.073	1.855	1.536	3.120	2.101	3.227	3.378	3.597	2.904	2.737	2.674	6.250	nan	1.743	6.870	4.800	3.321	2.190
9838	chr3	138105161	138106687	+	0	NA	intron (NM_008642, intron 12 of 17)	L3|LINE|CR1	25453	NM_008642	17777	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding	4.197	6.731	1.852	5.813	1.834	0.673	6.258	4.374	3.166	7.291	4.612	2.743	6.039	5.935	6.356	8.563	3.475	5.787	2.872	0.863	1.723	3.716	1.551	2.305	9.633
4478	chr14	14896940	14904584	+	0	NA	intron (NM_001195229, intron 22 of 34)	Lx|LINE|L1	79947	NM_001195229	674895	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	4.526	5.104	2.716	3.432	2.125	0.998	3.922	7.415	nan	3.075	1.774	1.438	6.266	5.163	5.099	5.692	3.804	4.553	3.742	1.580	1.128	nan	2.253	1.630	3.872
4752	chr14	63793576	63797594	+	0	NA	intron (NM_173393, intron 1 of 2)	intron (NM_173393, intron 1 of 2)	-64727	NM_028228	72400	Mm.379214	NM_028228	ENSMUSG00000021958	Pinx1	2210403I16Rik|2610028A01Rik|67-11-3|AU024023|LPTS|LPTS1	PIN2/TERF1 interacting, telomerase inhibitor 1	protein-coding	3.848	3.701	1.224	4.494	1.968	1.711	3.098	5.756	3.491	4.056	4.130	2.902	3.768	4.915	5.404	5.466	2.435	5.353	5.052	2.768	3.134	4.492	3.821	3.107	5.985
15756	chrX	73118813	73121033	+	0	NA	intron (NM_001025384, intron 1 of 4)	intron (NM_001025384, intron 1 of 4)	-2221	NM_001045539	574438	Mm.435653	NM_001045539	ENSMUSG00000058328	Xlr5a	Xlr5d	X-linked lymphocyte-regulated 5A	protein-coding	5.762	0.866	0.351	4.389	4.301	2.364	5.909	5.661	4.366	5.624	4.972	3.133	4.408	6.222	5.366	5.372	4.941	4.906	1.795	1.564	1.842	2.041	3.300	3.779	6.857
2694	chr11	96195311	96217837	+	0	NA	Intergenic	Intergenic	3120	NR_108029	432593	Mm.342467	NR_108029		Gm11538	OTTMUSG00000001983	predicted gene 11538	ncRNA	1.647	nan	0.698	2.439	1.087	0.535	0.938	0.550	1.038	1.286	0.659	0.587	0.472	1.110	0.669	1.092	nan	1.068	7.978	nan	2.680	5.362	nan	nan	1.121
9164	chr3	19852771	19864058	+	0	NA	Intergenic	Intergenic	-36457	NR_027985	70808	Mm.427103	NR_027985	ENSMUSG00000048106	4632415L05Rik	AI662792	RRS1 ribosome biogenesis regulator homolog pseudogene	pseudo	5.356	nan	1.476	4.324	3.357	1.702	4.416	6.762	4.212	4.961	3.253	4.222	8.186	5.435	4.155	4.455	5.256	5.756	1.226	1.359	0.710	1.617	0.845	0.410	3.607
12476	chr6	92817973	92820764	+	0	NA	intron (NM_175314, intron 19 of 29)	intron (NM_175314, intron 19 of 29)	82073	NM_175314	101401	Mm.158235	NM_175314	ENSMUSG00000030022	Adamts9	1810011L16Rik|8430403M15Rik|AW743315|E030027K14Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 9	protein-coding	4.896	1.521	0.819	4.907	4.332	1.928	8.784	5.616	3.678	3.828	0.774	0.509	6.448	10.174	8.617	11.493	7.736	nan	nan	0.999	0.554	0.853	0.735	0.374	6.446
13477	chr7	106312142	106324883	+	0	NA	Intergenic	L1_Mur3|LINE|L1	6016	NR_030720	668128	Mm.484022	NR_030720		Gm8989	EG668128|Gm21911	very large inducible GTPase 1 pseudogene	pseudo	1.136	1.006	0.563	0.923	0.720	0.338	1.605	7.101	1.345	1.001	1.267	1.097	1.536	nan	3.118	3.192	1.944	nan	nan	0.553	0.492	2.076	1.084	0.650	2.017
2657	chr11	94353171	94364156	+	0	NA	intron (NM_029600, intron 23 of 30)	intron (NM_029600, intron 23 of 30)	30662	NM_146024	71452	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	6.064	nan	0.249	5.992	4.303	2.300	6.472	7.053	5.342	9.002	3.327	1.719	7.360	10.487	8.048	9.577	nan	8.456	2.670	nan	1.570	5.100	nan	nan	9.548
12995	chr7	20515611	20527388	+	0	NA	Intergenic	Lx4A|LINE|L1	-10965	NM_001166737	667129	Mm.480263	NM_001166737	ENSMUSG00000096663	Vmn1r103	EG667129|Gm8474	vomeronasal 1 receptor 103	protein-coding	6.678	1.763	0.772	5.357	5.821	3.895	8.228	9.051	4.572	5.784	1.823	1.346	9.497	11.610	7.994	7.183	6.766	7.159	0.503	1.062	0.977	1.129	0.444	0.367	9.261
7373	chr18	73730599	73735414	+	0	NA	Intergenic	L1MB8|LINE|L1	21473	NM_053255	114615	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	9.974	10.643	3.092	8.368	6.086	4.632	7.886	8.477	5.109	nan	5.186	3.091	7.589	9.215	7.702	8.915	6.749	9.224	4.790	nan	2.855	4.685	3.311	4.584	15.264
11757	chr5	130644871	130662762	+	0	NA	intron (NM_021371, intron 3 of 5)	intron (NM_021371, intron 3 of 5)	205024	NM_021371	140904	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	4.842	3.564	2.421	4.350	4.617	3.423	4.323	4.652	4.517	nan	3.860	2.595	4.656	6.334	nan	5.559	4.483	nan	nan	1.534	1.417	1.560	nan	1.332	5.063
1623	chr10	94011730	94016094	+	0	NA	intron (NM_001304572, intron 1 of 11)	B3|SINE|B2	21830	NM_001304720	215008	Mm.124177	NM_172538	ENSMUSG00000036099	Vezt	A630071D13Rik|AI848282	vezatin, adherens junctions transmembrane protein	protein-coding	4.530	2.587	1.611	3.691	2.545	1.305	2.317	3.985	3.721	4.101	nan	2.517	2.832	3.684	3.389	5.536	3.560	3.972	nan	0.757	0.905	nan	0.925	0.588	5.189
13152	chr7	51722643	51725681	+	0	NA	Intergenic	MER44D|DNA|TcMar-Tigger	102332	NM_080853	140919	Mm.256618	NM_080853	ENSMUSG00000030500	Slc17a6	2900073D12Rik|DNPI|VGLUT2	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6	protein-coding	3.289	3.546	1.460	3.671	3.387	1.138	4.566	3.373	2.288	3.219	1.347	0.954	3.530	7.002	6.056	4.512	3.188	5.880	8.069	4.046	2.450	4.699	7.914	5.022	8.452
12670	chr6	120769097	120772752	+	0	NA	3' UTR (NM_001128151, exon 19 of 19)	3' UTR (NM_001128151, exon 19 of 19)	-2844	NM_001081048	71803	Mm.425340	NM_001081048	ENSMUSG00000004902	Slc25a18	1500015I14Rik|AW125787	solute carrier family 25 (mitochondrial carrier), member 18	protein-coding	8.642	4.356	2.753	5.867	6.265	4.114	4.376	7.605	4.495	5.333	3.957	3.482	5.411	6.305	5.019	6.386	5.183	5.741	2.188	2.030	2.213	1.853	nan	1.932	7.159
890	chr1	173431929	173434511	+	0	NA	intron (NM_001013779, intron 2 of 8)	intron (NM_001013779, intron 2 of 8)	12616	NM_001013779	383619	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	6.257	10.101	3.670	6.941	4.064	2.655	6.201	5.907	5.104	7.846	5.604	3.760	7.335	nan	6.935	10.677	7.891	7.219	5.070	2.717	2.616	4.832	2.711	2.930	10.936
3699	chr12	106821499	106823178	+	0	NA	Intergenic	Intergenic	-106014	NR_015512	71033	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA	3.153	0.939	0.307	3.987	1.832	0.512	2.936	nan	nan	nan	0.603	0.708	4.301	3.750	3.047	1.298	0.609	3.233	1.550	1.177	0.605	1.936	1.717	0.912	nan
12352	chr6	83181316	83182508	+	0	NA	intron (NM_007835, intron 1 of 31)	B1F|SINE|Alu	2323	NM_007835	13191	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	0.563	0.554	0.442	nan	0.565	0.302	1.826	0.818	0.641	1.155	0.330	0.317	0.997	3.340	0.962	1.616	1.487	1.115	nan	0.530	0.445	0.494	0.753	1.022	0.908
1926	chr11	5038282	5040691	+	0	NA	intron (NM_007454, intron 17 of 20)	intron (NM_007454, intron 17 of 20)	-18642	NM_145216	75668	Mm.374836	NM_145216	ENSMUSG00000034209	Rasl10a	2210403B10Rik|AI852688	RAS-like, family 10, member A	protein-coding	2.904	0.568	0.449	3.431	1.861	1.220	2.393	2.688	2.658	3.085	0.861	1.045	2.667	4.520	3.694	4.139	3.738	4.522	3.736	nan	1.732	4.946	4.046	2.138	4.397
14472	chr8	95045903	95047056	+	0	NA	Intergenic	MT2A|LTR|ERVL	-8624	NM_001042715	330830	Mm.277112	NM_001042715	ENSMUSG00000031786	Drc7	Ccdc135|Gm770|SRG-L|SRG-S	dynein regulatory complex subunit 7	protein-coding	0.367	0.451	0.343	0.795	1.482	0.322	3.937	0.889	0.907	0.683	0.330	0.090	6.533	3.694	5.120	5.279	1.540	1.999	1.036	0.953	0.368	1.479	1.328	0.130	0.821
14175	chr8	41357389	41358625	+	0	NA	intron (NM_019734, intron 2 of 13)	intron (NM_019734, intron 2 of 13)	16690	NM_019734	11886	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	1.915	0.463	0.482	1.541	0.764	0.195	1.623	4.064	1.105	1.515	0.773	0.490	2.140	2.983	2.601	4.069	1.707	3.072	1.083	0.621	0.327	0.915	0.395	0.102	2.566
12625	chr6	115671572	115673382	+	0	NA	intron (NM_029780, intron 1 of 16)	B4A|SINE|B4	4158	NM_029780	110157	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	2.790	1.111	0.424	2.756	4.741	5.745	10.298	10.369	2.513	2.617	0.766	1.191	5.351	7.556	7.525	8.764	5.866	4.533	0.625	0.663	0.336	0.946	nan	0.838	5.027
1282	chr10	51951113	51955528	+	0	NA	Intergenic	Intergenic	-69182	NM_001300957	215031	Mm.87237	NM_153786	ENSMUSG00000049641	Vgll2	C130057C21Rik|VITO-1|Vito1|vgl-2	vestigial like family member 2	protein-coding	6.316	nan	2.091	3.859	3.664	2.633	7.410	6.263	4.330	4.961	3.121	2.247	6.243	6.369	6.068	6.689	6.413	5.078	nan	1.108	1.102	1.170	1.297	1.137	6.980
6891	chr17	81184112	81185594	+	0	NA	Intergenic	Intergenic	-119768	NM_028138	72167	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	5.228	0.953	0.788	4.003	2.277	1.427	7.188	6.368	3.801	3.567	5.315	2.448	5.380	5.286	5.757	7.412	7.189	5.600	0.904	1.312	0.579	0.796	1.482	1.007	3.212
5144	chr15	38464554	38466274	+	0	NA	Intergenic	RMER19C|LTR|ERVK	25133	NR_105916	102465574		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	5.436	7.968	6.062	2.914	3.628	1.699	3.904	8.154	2.847	3.722	2.024	1.606	4.607	5.801	3.675	4.063	6.769	3.395	0.854	1.914	1.384	nan	0.609	0.744	3.512
9828	chr3	136407134	136408270	+	0	NA	Intergenic	Intergenic	41647	NR_040592	70055	Mm.261063	NR_040592	ENSMUSG00000099508	1700030L20Rik	-	RIKEN cDNA 1700030L20 gene	ncRNA	3.225	2.850	0.772	2.048	1.370	1.112	2.653	2.235	2.047	1.695	0.987	0.771	2.864	3.298	3.061	3.302	1.524	4.460	3.153	2.347	1.155	3.991	2.238	0.938	2.081
1694	chr10	104950710	104951958	+	0	NA	Intergenic	Intergenic	623145	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	6.142	0.172	0.176	4.858	2.213	1.906	3.705	6.417	6.489	4.816	2.959	2.658	5.163	5.662	4.001	6.869	7.517	6.335	1.229	0.557	1.095	0.911	1.046	1.232	4.312
7321	chr18	64801118	64807175	+	0	NA	Intergenic	B4|SINE|B4	-83610	NM_001114386	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	4.404	1.034	0.670	3.339	3.016	1.694	5.328	6.037	3.963	3.795	2.296	3.361	5.925	5.036	5.550	4.762	3.408	4.212	1.589	1.329	1.061	1.322	1.198	0.662	3.988
6820	chr17	71235636	71240016	+	0	NA	intron (NM_001164885, intron 9 of 19)	intron (NM_001164885, intron 9 of 19)	33172	NM_001164885	64898	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.797	11.609	6.027	1.027	0.795	0.596	2.338	1.342	nan	0.640	3.400	2.022	0.489	nan	1.131	1.093	0.946	1.182	0.522	0.922	0.630	0.633	0.556	0.467	0.943
15818	chrX	137039125	137042987	+	0	NA	Intergenic	B4A|SINE|B4	-2754	NM_001082412	67062	Mm.276518	NM_001082412	ENSMUSG00000044348	Slc25a53	2310046F18Rik|2810402A17Rik|AI448995|AI841128|Mcart6	solute carrier family 25, member 53	protein-coding	6.166	6.891	2.486	6.280	4.744	3.137	2.331	5.049	4.700	5.940	4.032	1.824	4.111	6.967	3.638	5.142	2.853	5.350	0.716	1.012	1.565	0.850	0.564	0.859	3.910
6266	chr16	96149566	96151914	+	0	NA	intron (NM_207301, intron 1 of 4)	RLTR17B_Mm|LTR|ERVK	5321	NM_207301	71446	Mm.255063	NM_207301	ENSMUSG00000023147	Wrb	5530402J05Rik|C030018G21Rik|Chd5	tryptophan rich basic protein	protein-coding	7.302	2.060	0.808	3.809	2.864	1.314	6.478	9.552	4.035	4.769	4.951	2.005	7.997	8.990	7.331	10.041	6.282	7.386	2.896	1.218	1.194	2.629	3.677	2.891	7.938
9732	chr3	116740725	116742907	+	0	NA	3' UTR (NM_001081326, exon 34 of 34)	3' UTR (NM_001081326, exon 34 of 34)	-29536	NM_144902	229782	Mm.190758	NM_144902	ENSMUSG00000027957	Slc35a3	2310050P13Rik	solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3	protein-coding	4.938	0.614	0.722	3.346	3.591	2.583	8.365	5.658	6.073	6.623	5.870	3.936	8.864	8.534	5.927	5.353	4.638	5.136	2.371	1.489	1.135	1.702	nan	1.610	2.621
7069	chr18	23615213	23618849	+	0	NA	intron (NM_001285807, intron 14 of 24)	L1_Mus3|LINE|L1	119549	NM_001285810	13527	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	7.431	0.558	0.460	3.549	4.896	4.228	5.611	5.237	4.016	4.910	2.198	1.269	8.632	6.092	3.897	4.012	5.154	7.376	4.184	3.623	3.543	nan	2.110	1.183	5.387
3183	chr12	12515384	12518168	+	0	NA	Intergenic	Intergenic	-124301	NR_045829	70858	Mm.410838	NR_045829		4921511I17Rik	-	RIKEN cDNA 4921511I17 gene	ncRNA	5.587	0.591	0.047	1.286	1.937	0.809	5.838	4.029	4.341	4.155	1.443	0.750	7.210	5.721	6.036	6.850	4.672	4.840	0.704	0.435	0.441	0.727	0.699	0.238	5.143
15342	chr9	78434474	78436200	+	0	NA	intron (NR_125721, intron 3 of 4)	intron (NR_125721, intron 3 of 4)	7900	NR_125721	214763	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	5.579	5.154	1.452	3.536	2.777	1.494	3.107	4.602	2.897	4.154	2.320	0.959	2.500	4.270	3.382	5.191	2.431	3.811	2.166	nan	2.479	2.934	2.971	2.659	7.020
3079	chr11	119262545	119265344	+	0	NA	intron (NM_175430, intron 18 of 18)	B1_Mus1|SINE|Alu	-4019	NM_001159324	14387	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	2.747	1.377	0.967	3.129	5.503	4.311	1.938	3.826	2.478	nan	1.987	1.592	1.857	3.728	1.961	2.125	1.434	3.422	1.356	nan	1.476	0.576	0.767	0.902	2.126
481	chr1	99855948	99863896	+	0	NA	intron (NM_172851, intron 1 of 23)	RLTR17B_Mm|LTR|ERVK	87157	NM_172851	241175	Mm.251301	NM_172851	ENSMUSG00000067028	Cntnap5b	C230078M14Rik|Caspr5-2	contactin associated protein-like 5B	protein-coding	3.435	nan	0.196	1.480	0.868	0.515	2.094	2.859	2.663	2.366	2.884	2.593	4.596	3.060	3.519	3.302	2.570	4.053	nan	0.991	0.478	nan	1.340	0.752	nan
867	chr1	172783005	172784102	+	0	NA	Intergenic	L1M3|LINE|L1	85497	NM_007768	12944	Mm.28767	NM_007768	ENSMUSG00000037942	Crp	AI255847	C-reactive protein, pentraxin-related	protein-coding	6.395	7.328	4.509	2.721	2.956	0.785	3.514	2.978	5.083	3.667	3.209	1.735	4.904	4.865	3.324	4.714	3.491	4.700	1.376	0.786	0.738	nan	nan	0.086	2.907
7728	chr19	34714901	34715759	+	0	NA	intron (NM_172838, intron 1 of 6)	B1_Mur1|SINE|Alu	31781	NM_172838	240638	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	5.904	9.417	2.133	5.242	3.302	0.379	3.607	1.959	4.202	3.549	2.656	1.252	3.158	3.581	4.282	6.904	5.623	6.994	5.064	1.948	0.998	4.550	4.289	2.484	9.459
14379	chr8	83361518	83364495	+	0	NA	intron (NM_026233, intron 6 of 10)	intron (NM_026233, intron 6 of 10)	14534	NM_026233	67555	Mm.84115	NM_026233	ENSMUSG00000035057	Mgat4d	4933434I20Rik|GnT1IP|GnT1IP-L	MGAT4 family, member C	protein-coding	4.136	1.865	1.312	2.191	3.809	3.021	4.226	5.972	3.111	2.808	2.075	1.168	4.191	5.472	4.795	5.318	5.503	3.989	nan	2.246	1.181	1.350	1.572	1.737	3.844
3669	chr12	103689046	103693250	+	0	NA	intron (NM_026687, intron 4 of 5)	intron (NM_026687, intron 4 of 5)	3541	NM_001164742	68348	Mm.20149	NM_026687	ENSMUSG00000021081	Serpina1f	0610012A11Rik|AI327419|Serpina2|epserin	serine (or cysteine) peptidase inhibitor, clade A, member 1F	protein-coding	6.987	9.304	7.254	nan	7.296	6.652	2.831	2.202	4.390	4.403	1.775	2.484	3.136	3.828	2.805	2.956	3.499	3.557	1.916	2.858	4.443	2.288	2.114	1.991	2.901
3442	chr12	76655290	76662499	+	0	NA	intron (NM_013675, intron 1 of 35)	L1MC5a|LINE|L1	51653	NM_013675	20741	Mm.32881	NM_013675	ENSMUSG00000021061	Sptb	AI842465|D330027P03Rik|Gm1301|Spnb-1|Spnb1|ja|jaundiced|mKIAA4219	spectrin beta, erythrocytic	protein-coding	8.837	1.204	0.759	2.787	3.872	2.196	7.938	4.563	3.924	3.537	3.743	2.168	8.005	7.134	7.226	7.604	7.629	6.453	1.167	1.213	1.108	1.104	1.185	0.835	8.076
15080	chr9	51767496	51772751	+	0	NA	intron (NM_175535, intron 1 of 14)	intron (NM_175535, intron 1 of 14)	4771	NM_175535	244867	Mm.400352	NM_175535	ENSMUSG00000053199	Arhgap20	6530403F17Rik|A530023E23Rik|RARhoGAP|mKIAA1391	Rho GTPase activating protein 20	protein-coding	7.666	3.099	0.832	6.197	2.876	1.062	4.576	7.021	7.244	11.166	4.362	2.765	7.473	7.902	6.458	9.462	4.755	10.446	2.260	1.284	1.050	nan	1.811	1.484	9.147
11537	chr5	106257830	106259459	+	0	NA	Intergenic	Intergenic	-62696	NR_136913	102635633	Mm.383511	NR_136913	ENSMUSG00000105508	Gm32921	-	predicted gene, 32921	ncRNA	2.694	0.928	0.605	3.805	2.383	1.308	2.951	2.161	3.121	2.979	1.572	1.036	4.189	4.702	3.901	3.894	2.587	3.617	nan	0.667	0.527	1.386	0.458	0.220	2.848
9759	chr3	121715719	121717826	+	0	NA	Intergenic	MIR|SINE|MIR	-6765	NM_010171	14066	Mm.273188	NM_010171	ENSMUSG00000028128	F3	AA409063|CD142|Cf-3|Cf3|TF	coagulation factor III	protein-coding	4.161	0.700	0.178	3.525	4.023	1.381	5.194	3.311	3.811	4.627	0.998	0.615	4.130	6.802	4.889	5.837	3.130	5.851	0.701	0.318	0.157	0.890	nan	0.330	6.375
11860	chr5	138528746	138531663	+	0	NA	Intergenic	Intergenic	34490	NM_029693	76658	Mm.73235	NM_029693	ENSMUSG00000029526	1700123K08Rik	-	RIKEN cDNA 1700123K08 gene	protein-coding	4.329	0.844	0.724	2.045	2.162	1.279	4.215	3.440	1.350	1.635	0.828	0.835	4.729	6.437	4.892	3.074	3.787	3.152	0.889	1.114	0.820	0.749	nan	0.719	2.817
15524	chr9	110565932	110573045	+	0	NA	intron (NM_001081340, intron 9 of 20)	PB1D10|SINE|Alu	36891	NM_001081340	235626	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	2.667	7.134	4.676	1.784	1.820	1.135	1.963	2.705	nan	nan	1.721	2.096	1.766	2.340	1.984	2.479	1.787	nan	1.233	1.693	1.379	0.763	1.734	1.138	3.844
11942	chr5	145670628	145683690	+	0	NA	Intergenic	RMER30|DNA|hAT-Charlie	42977	NM_017396	53973	Mm.379071	NM_017396	ENSMUSG00000075551	Cyp3a41a	Cyp3a41	cytochrome P450, family 3, subfamily a, polypeptide 41A	protein-coding	3.970	1.530	0.815	3.211	2.871	1.776	6.757	3.948	4.473	4.895	2.410	2.316	5.047	6.147	6.954	6.737	4.094	5.353	0.948	0.814	0.723	0.932	0.788	0.708	5.699
7187	chr18	38756497	38766051	+	0	NA	Intergenic	B1_Mm|SINE|Alu	-131182	NM_001033789	545253	Mm.244585	NM_001033789	ENSMUSG00000036452	Gm5820	EG545253	predicted gene 5820	protein-coding	5.209	2.254	0.857	4.736	2.721	1.458	6.037	8.699	3.622	4.855	2.097	2.849	4.115	nan	4.609	nan	4.039	4.850	1.052	1.117	0.953	1.853	0.626	0.622	7.599
14154	chr8	36991242	36992723	+	0	NA	intron (NR_126063, intron 2 of 2)	intron (NR_126063, intron 2 of 2)	-1593	NM_001039220	621080	Mm.373292	NM_001039220	ENSMUSG00000074384	AI429214	-	expressed sequence AI429214	protein-coding	2.090	0.471	0.388	0.860	0.566	0.177	3.128	0.893	1.440	1.424	0.503	0.937	5.098	2.658	1.531	1.396	1.143	1.844	0.540	0.419	0.455	0.657	0.307	0.106	nan
229	chr1	60707391	60709964	+	0	NA	Intergenic	Intergenic	-37711	NM_007642	12487	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	4.050	3.033	1.541	3.150	2.331	1.040	2.019	3.144	3.312	2.794	1.183	1.295	1.919	4.727	2.765	3.454	2.575	3.370	1.235	1.550	1.178	0.768	1.044	0.444	2.030
11972	chr5	149374032	149375321	+	0	NA	Intergenic	Intergenic	-37130	NM_027519	70717	Mm.252139	NM_027519	ENSMUSG00000029659	Medag	6330406I15Rik|Awms3|MEDA-4|Meda4|mAWMS3	mesenteric estrogen dependent adipogenesis	protein-coding	2.918	0.810	0.634	1.648	3.709	3.167	3.999	3.730	nan	2.403	1.943	1.397	2.979	3.981	3.443	nan	1.307	2.800	0.795	1.517	0.957	0.682	1.235	1.167	1.872
13937	chr7	151208404	151209772	+	0	NA	Intergenic	Intergenic	5894253	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	2.378	nan	0.617	nan	0.603	0.230	5.485	11.468	nan	1.367	0.525	0.253	6.320	4.321	3.174	3.819	2.103	3.274	0.371	0.471	0.172	1.122	nan	0.388	3.370
10252	chr4	88599226	88606459	+	0	NA	exon (NM_177361, exon 1 of 1)	exon (NM_177361, exon 1 of 1)	534	NM_177361	242519	Mm.246618	NM_177361	ENSMUSG00000073811	Ifna12	-	interferon alpha 12	protein-coding	4.935	nan	0.429	1.610	2.305	1.405	4.580	nan	nan	3.767	9.647	6.320	5.375	7.079	5.184	4.402	2.851	nan	0.682	nan	0.458	1.042	0.554	0.455	nan
2059	chr11	31617822	31619242	+	0	NA	Intergenic	Intergenic	53330	NM_001024919	69556	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	3.027	1.118	0.274	3.734	3.634	1.170	3.115	3.614	1.870	4.312	0.700	1.041	3.078	4.621	2.931	3.555	nan	3.893	2.143	1.033	0.580	3.476	1.871	1.264	3.239
12143	chr6	32893640	32896801	+	0	NA	intron (NM_025336, intron 4 of 7)	intron (NM_025336, intron 4 of 7)	164932	NM_025336	66075	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding	3.921	0.649	1.239	2.037	4.228	2.439	2.786	4.501	2.496	3.609	0.984	1.251	3.804	4.961	2.782	nan	6.524	3.167	nan	1.809	0.895	0.868	1.263	1.051	2.010
315	chr1	74939195	74949953	+	0	NA	TTS (NM_010544)	TTS (NM_010544)	7098	NM_001313683	16147	Mm.439736	NM_010544	ENSMUSG00000006538	Ihh	HHG-2	Indian hedgehog	protein-coding	0.655	1.437	0.619	0.528	0.328	0.183	0.525	1.146	0.549	0.794	0.226	0.250	0.868	0.471	0.656	nan	0.762	nan	nan	nan	4.826	9.621	nan	7.129	nan
1827	chr10	124799227	124804031	+	0	NA	Intergenic	Intergenic	332555	NR_028310	75030	Mm.159403	NR_028310		4930503E24Rik	-	eukaryotic translation initiation factor 3, subunit I pseudogene	pseudo	1.998	nan	0.235	1.176	1.060	0.804	1.405	2.617	1.249	0.975	0.457	0.645	1.951	1.411	2.255	2.608	3.000	2.138	5.752	4.414	3.903	7.713	nan	2.543	1.751
4842	chr14	75250669	75253597	+	0	NA	intron (NM_019775, intron 1 of 10)	B4|SINE|B4	9846	NM_019775	56373	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	3.565	2.221	1.106	2.279	1.749	0.863	3.368	3.403	2.639	2.244	5.360	4.581	2.443	nan	3.588	4.164	2.331	3.032	1.944	1.206	0.681	2.241	1.331	1.246	4.046
14230	chr8	48986425	48989698	+	0	NA	Intergenic	IAPEz-int|LTR|ERVK	-313371	NM_011857	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding	2.994	0.577	0.273	1.814	1.736	1.132	1.824	1.096	2.667	2.473	1.202	0.606	4.787	3.375	2.018	4.384	4.660	3.032	0.506	0.825	0.833	0.437	0.518	0.323	2.773
2501	chr11	77713770	77716842	+	0	NA	3' UTR (NM_001024205, exon 4 of 4)	3' UTR (NM_001024205, exon 4 of 4)	9987	NM_001313933	12957	Mm.22830	NM_009965	ENSMUSG00000000724	Cryba1	BA3/A1|Cryb	crystallin, beta A1	protein-coding	7.153	1.065	0.974	3.192	1.926	1.343	9.859	6.063	3.916	4.996	0.708	0.683	7.391	7.873	nan	7.972	9.306	5.834	1.471	1.655	nan	1.496	1.417	1.531	6.906
11060	chr5	23023692	23026305	+	0	NA	intron (NM_001081231, intron 1 of 3)	ORR1A2|LTR|ERVL-MaLR	-278114	NR_027362	330052	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	3.107	1.080	0.678	nan	2.376	1.157	2.662	1.878	1.640	1.875	2.291	1.737	1.944	6.072	4.120	3.209	1.669	2.431	0.676	0.724	0.623	1.163	0.635	0.343	2.747
13542	chr7	112723558	112726119	+	0	NA	intron (NM_009346, intron 1 of 12)	intron (NM_009346, intron 1 of 12)	-34546	NM_001166585	21676	Mm.24685	NM_009346	ENSMUSG00000055320	Tead1	2610024B07Rik|B230114H05Rik|Gtrgeo5|TEAD-1|TEF-1|Tcf13|mTEF-1	TEA domain family member 1	protein-coding	4.135	1.072	1.064	4.918	3.813	1.529	2.581	4.480	3.924	4.297	0.682	0.789	3.874	4.731	3.496	4.494	3.985	7.637	nan	1.229	0.691	1.038	2.020	0.893	5.397
14396	chr8	86117253	86119144	+	0	NA	Intergenic	Intergenic	277196	NM_199446	102093	Mm.237296	NM_199446	ENSMUSG00000036879	Phkb	AI463271	phosphorylase kinase beta	protein-coding	5.560	7.326	1.864	5.076	3.132	2.132	5.511	9.942	5.615	6.889	5.433	3.699	7.360	7.952	10.860	12.247	7.908	9.688	nan	3.143	2.834	7.765	4.074	2.339	11.475
2270	chr11	60017045	60030729	+	0	NA	intron (NM_001290011, intron 2 of 6)	L1M1|LINE|L1	13118	NM_008819	18618	Mm.2731	NM_008819	ENSMUSG00000000301	Pemt	PEAMT|PEMT2|PLMT|Pempt|Pempt2	phosphatidylethanolamine N-methyltransferase	protein-coding	4.833	2.034	0.648	4.807	3.927	2.377	5.942	5.639	4.237	6.054	4.159	1.960	4.705	8.060	6.169	8.775	4.139	6.184	nan	1.681	1.506	3.670	2.914	2.020	nan
10529	chr4	126144343	126146359	+	0	NA	Intergenic	Intergenic	-2652	NM_172145	230752	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	5.065	7.930	2.189	5.289	4.615	2.771	4.336	4.578	2.647	7.272	2.832	1.805	3.252	6.085	4.663	6.518	3.339	4.494	5.437	4.946	4.607	5.246	7.201	6.641	8.476
11802	chr5	136201726	136203476	+	0	NA	Intergenic	(GAA)n|Simple_repeat|Simple_repeat	-3647	NM_025774	66801	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	2.254	3.155	0.668	4.615	2.152	1.014	4.696	3.293	2.497	2.444	1.376	1.181	2.945	3.198	4.905	5.484	1.353	3.403	0.926	0.584	1.074	1.633	nan	0.402	4.970
6828	chr17	71517978	71520313	+	0	NA	intron (NM_023294, intron 5 of 16)	intron (NM_023294, intron 5 of 16)	7712	NM_023294	67052	Mm.225956	NM_023294	ENSMUSG00000024056	Ndc80	2610020P18Rik|AV139730|HEC|HEC1|Kntc2	NDC80 kinetochore complex component	protein-coding	2.831	1.362	1.389	4.427	2.725	1.206	2.839	2.853	nan	2.846	0.974	0.494	2.430	4.088	1.977	2.626	1.708	3.720	0.596	0.556	0.309	0.488	0.544	0.261	1.878
11662	chr5	122170597	122174011	+	0	NA	intron (NM_013636, intron 4 of 6)	intron (NM_013636, intron 4 of 6)	14025	NM_013636	19047	Mm.280784	NM_013636	ENSMUSG00000004455	Ppp1cc	PP-1G|PP1|dis2m1	protein phosphatase 1, catalytic subunit, gamma isoform	protein-coding	3.587	1.226	1.068	3.991	4.697	4.099	3.686	4.010	4.027	4.034	1.590	1.727	3.351	5.588	3.576	4.345	3.797	4.536	nan	nan	1.364	0.844	nan	0.864	2.791
14921	chr9	22271630	22273223	+	0	NA	intron (NR_030448, intron 1 of 4)	PB1D10|SINE|Alu	-12531	NM_181419	235048	Mm.292381	NM_181419	ENSMUSG00000062794	Zfp599	6720416P20	zinc finger protein 599	protein-coding	7.917	11.542	4.275	8.476	2.985	1.832	5.840	7.119	4.946	12.379	6.065	4.133	6.184	8.308	8.059	9.211	5.513	8.520	7.147	4.778	4.115	7.745	6.554	6.654	14.076
4852	chr14	75530254	75537748	+	0	NA	Intergenic	Intergenic	57984	NM_026457	67926	Mm.23361	NM_026457	ENSMUSG00000034913	Spert	1700086N05Rik|AI596460|Nurit	spermatid associated	protein-coding	8.778	2.540	1.103	6.592	3.961	1.861	7.693	9.309	6.718	6.755	2.230	2.539	8.905	10.619	9.605	10.711	6.665	10.309	0.683	1.231	0.638	0.577	0.530	0.361	8.775
14211	chr8	47822942	47839547	+	0	NA	intron (NM_133791, intron 22 of 22)	intron (NM_133791, intron 22 of 22)	6762	NM_029383	75677	Mm.390033	NM_029383	ENSMUSG00000038064	Cldn22	2210404A22Rik|5330431C14Rik|9530051B05Rik	claudin 22	protein-coding	8.990	8.360	3.928	7.646	6.242	3.515	6.435	7.068	6.555	9.955	3.818	2.779	8.822	9.269	7.752	10.578	8.611	9.039	3.417	3.174	2.546	4.650	3.002	2.667	10.064
15839	chrX	147481061	147485517	+	0	NA	intron (NM_001081173, intron 16 of 20)	intron (NM_001081173, intron 16 of 20)	-54097	NM_008356	16165	Mm.368330	NM_008356	ENSMUSG00000031289	Il13ra2	CD213a2|IL-13R-alpha-2	interleukin 13 receptor, alpha 2	protein-coding	1.854	1.365	0.219	1.662	0.887	0.520	1.494	3.799	0.916	2.317	0.506	0.743	2.310	1.946	2.326	4.482	1.787	2.113	3.194	1.481	1.176	2.133	2.831	2.572	4.671
10370	chr4	108752002	108753596	+	0	NA	intron (NM_001347163, intron 1 of 18)	intron (NM_001347163, intron 1 of 18)	28289	NM_001347163	230597	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	4.190	1.798	0.824	4.573	2.066	2.073	2.016	3.738	4.038	3.487	4.490	2.378	3.607	3.154	2.956	4.308	1.899	4.977	0.973	1.728	1.509	2.407	0.778	0.544	3.566
6460	chr17	27932414	27940482	+	0	NA	intron (NM_001286040, intron 1 of 24)	intron (NM_001286040, intron 1 of 24)	27142	NM_181413	224650	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	5.583	1.466	0.754	3.391	3.686	2.696	6.332	6.762	4.840	4.452	5.763	5.729	4.767	6.310	5.929	7.456	6.376	4.758	3.999	2.188	2.271	4.891	3.331	3.100	6.525
9121	chr2	181230928	181234057	+	0	NA	exon (NM_183162, exon 9 of 19)	exon (NM_183162, exon 9 of 19)	9535	NM_183162	229003	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	7.798	6.704	2.139	7.216	7.594	5.186	6.525	8.953	5.012	6.059	4.549	2.679	7.527	8.286	6.710	9.243	6.615	7.372	2.727	1.337	1.499	3.306	2.363	2.338	9.745
9855	chr3	144482576	144484949	+	0	NA	intron (NM_011828, intron 1 of 6)	intron (NM_011828, intron 1 of 6)	86454	NM_011828	23908	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	2.551	0.555	0.685	0.542	0.242	0.157	4.535	0.758	0.551	0.647	6.083	1.558	3.685	1.396	0.762	0.569	0.526	0.868	2.563	1.041	0.723	1.261	1.805	1.147	0.312
12253	chr6	54152671	54155406	+	0	NA	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	-110820	NM_001311133	69993	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	3.517	0.907	0.329	1.194	0.803	0.410	6.594	7.327	2.270	1.355	1.537	1.535	6.802	3.076	4.789	5.489	3.168	4.447	nan	0.504	0.279	0.797	1.078	0.850	3.145
12249	chr6	53865639	53868023	+	0	NA	Intergenic	Intergenic	-46006	NM_025817	66873	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	3.946	0.462	0.351	1.371	1.335	0.780	4.212	2.273	1.272	1.244	0.212	0.295	4.511	3.238	1.641	3.204	6.966	4.479	nan	2.295	1.055	2.972	1.979	1.006	3.203
5829	chr16	16599009	16600685	+	0	NA	exon (NM_001301817, exon 1 of 17)	exon (NM_001301817, exon 1 of 17)	131	NM_001301817	224014	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	4.826	1.365	0.607	3.464	2.558	1.801	5.565	7.192	3.898	6.459	1.369	3.033	4.919	4.821	5.548	9.168	4.110	6.035	1.320	1.084	1.154	2.545	0.794	1.212	7.562
2648	chr11	94069697	94076080	+	0	NA	intron (NM_001025430, intron 5 of 25)	intron (NM_001025430, intron 5 of 25)	28683	NM_001025429	70834	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	7.371	nan	2.000	7.101	3.913	2.579	5.677	6.932	5.205	8.033	4.317	3.886	5.974	7.647	6.404	8.080	nan	6.895	6.864	nan	3.409	7.061	nan	nan	8.465
12384	chr6	86495998	86502836	+	0	NA	Intergenic	B3|SINE|B2	-11190	NR_040292	381792	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	4.418	3.681	2.051	nan	7.919	6.341	7.124	4.780	5.114	4.489	4.108	2.021	4.582	7.482	3.939	4.578	3.857	4.425	nan	1.890	1.659	1.299	1.784	1.862	3.537
7954	chr2	6624059	6643433	+	0	NA	intron (NM_001347094, intron 3 of 12)	intron (NM_001347094, intron 3 of 12)	87916	NM_001310447	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	2.840	11.409	4.785	2.590	1.371	0.553	0.684	0.789	1.581	1.704	1.095	0.652	0.743	1.268	1.585	1.616	1.314	1.737	1.242	1.602	0.778	1.489	0.737	0.528	1.397
13950	chr7	151862612	151866746	+	0	NA	Intergenic	Intergenic	6549844	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	2.465	nan	0.350	nan	1.967	1.265	5.585	5.524	3.665	5.585	5.766	3.497	5.439	7.408	5.227	5.632	3.400	6.090	0.472	0.592	0.558	0.974	nan	0.354	nan
5877	chr16	21235596	21237902	+	0	NA	Intergenic	ORR1C2|LTR|ERVL-MaLR	19317	NR_106145	102465781		NR_106145	ENSMUSG00000098400	Mir7680	Gm27417|mmu-mir-7680	microRNA 7680	ncRNA	1.345	0.654	0.624	1.168	1.721	1.830	2.007	2.676	1.781	1.541	2.155	2.256	1.621	3.049	1.161	nan	1.774	1.849	2.421	3.237	5.508	3.441	3.873	4.682	1.492
5314	chr15	74335308	74336793	+	0	NA	Intergenic	Intergenic	151596	NR_144499	102634630		NR_144499		Gm32168	-	predicted gene, 32168	ncRNA	nan	nan	0.692	nan	0.322	0.254	nan	0.500	0.332	nan	nan	0.436	0.078	nan	0.078	0.291	nan	0.316	2.298	3.870	3.664	nan	2.100	1.467	0.338
3784	chr12	114389469	114395600	+	0	NA	Intergenic	Intergenic	76932	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	nan	10.161	2.893	7.611	2.433	1.202	5.636	6.080	3.235	4.573	3.105	1.775	5.732	7.430	7.393	9.049	5.793	5.959	4.011	2.283	1.889	5.523	2.821	1.853	11.637
4479	chr14	15517653	15519806	+	0	NA	Intergenic	Intergenic	-79742	NM_146052	218763	Mm.138039	NM_146052	ENSMUSG00000045201	Lrrc3b	BC019794|LRP15	leucine rich repeat containing 3B	protein-coding	1.587	7.682	5.052	1.380	0.605	0.399	0.714	0.878	nan	1.350	0.999	0.864	0.786	0.858	1.173	1.048	0.837	1.340	2.158	2.440	1.778	3.892	1.570	0.777	1.098
1851	chr10	127173025	127178301	+	0	NA	intron (NM_177615, intron 8 of 16)	B1_Mus1|SINE|Alu	4982	NM_177615	216441	Mm.248373	NM_177615	ENSMUSG00000040441	Slc26a10	C78409|D630010I07	solute carrier family 26, member 10	protein-coding	11.263	3.481	1.116	6.308	3.890	2.039	7.487	7.009	4.209	7.674	5.693	2.458	9.380	7.416	7.335	7.359	6.953	6.437	2.787	2.183	1.797	2.655	nan	2.211	12.020
8772	chr2	147767005	147778933	+	0	NA	Intergenic	Intergenic	62276	NR_046014	381384	Mm.259809	NR_046014	ENSMUSG00000051986	A530006G24Rik	Gm1003	RIKEN cDNA A530006G24 gene	ncRNA	0.860	0.908	0.767	0.617	0.419	0.357	1.090	0.852	1.047	0.791	0.356	0.699	0.573	0.595	0.766	1.044	0.791	1.200	6.517	4.064	2.387	6.543	6.114	4.759	0.856
4542	chr14	25680070	25685832	+	0	NA	Intergenic	PB1D10|SINE|Alu	-11219	NM_134084	105675	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	0.327	0.496	0.203	0.428	0.084	0.065	0.327	0.426	0.230	0.247	0.381	0.254	0.162	0.254	0.304	nan	nan	nan	2.965	2.335	1.147	nan	2.217	1.229	0.658
3327	chr12	53791813	53794547	+	0	NA	intron (NM_013780, intron 4 of 11)	intron (NM_013780, intron 4 of 11)	410694	NM_028133	112407	Mm.133037	NM_028133	ENSMUSG00000035105	Egln3	2610021G09Rik|AI505553|AI648162|Hif-p4h-3|Phd3|SM-20	egl-9 family hypoxia-inducible factor 3	protein-coding	0.479	nan	0.529	0.375	0.166	0.089	0.648	0.477	1.180	0.605	7.465	1.954	1.101	0.709	nan	nan	0.251	nan	0.558	0.451	0.203	0.304	0.241	0.174	0.409
5535	chr15	85657590	85659433	+	0	NA	Intergenic	Intergenic	-45262	NR_110483	102800312	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	3.909	0.659	0.710	nan	1.771	0.663	nan	5.697	nan	3.886	0.907	2.169	3.794	6.199	4.249	5.681	6.574	3.408	nan	0.446	0.133	nan	0.421	0.745	4.105
14141	chr8	35635384	35638432	+	0	NA	intron (NM_001081279, intron 1 of 2)	L1Md_F2|LINE|L1	-47888	NR_040376	100504714	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	7.735	0.743	0.517	3.154	3.144	1.081	6.748	8.973	5.613	5.956	1.673	1.783	9.315	8.284	9.118	10.683	7.885	7.219	0.984	1.293	0.483	1.737	0.926	0.560	7.325
7618	chr19	20462550	20469444	+	0	NA	Intergenic	B4A|SINE|B4	-26718	NR_015502	320092	Mm.482524	NR_015502		E030003E18Rik	1700127G21Rik	RIKEN cDNA E030003E18 gene	ncRNA	6.804	1.559	1.316	5.115	6.620	3.534	5.236	6.570	5.956	5.672	8.864	5.096	5.989	7.597	5.604	5.656	6.961	8.872	1.584	1.295	0.767	0.951	2.604	1.869	4.575
13518	chr7	108465521	108476030	+	0	NA	Intergenic	Lx5|LINE|L1	5449	NM_146307	258304	Mm.377424	NM_146307	ENSMUSG00000096679	Olfr498	MOR204-36	olfactory receptor 498	protein-coding	2.912	2.268	0.805	2.934	2.547	1.609	6.065	9.276	2.946	4.506	1.485	2.033	5.728	nan	5.400	nan	3.106	nan	nan	1.260	1.202	2.554	2.668	2.212	5.983
2263	chr11	59770644	59779751	+	0	NA	intron (NM_012027, intron 23 of 23)	intron (NM_012027, intron 23 of 23)	12025	NR_110894	194908	Mm.344651	NM_183139	ENSMUSG00000043648	Pld6	4933433K01Rik|Gm10|Zuc|mZuc|mitoPLD	phospholipase D family, member 6	protein-coding	2.120	2.375	0.663	3.705	1.687	0.817	1.546	3.432	2.306	3.548	0.871	0.979	2.487	nan	2.945	2.772	1.716	3.739	nan	2.545	1.417	7.374	3.956	2.340	nan
10958	chr4	151526622	151528538	+	0	NA	intron (NM_001081557, intron 4 of 23)	ID_B1|SINE|B4	334188	NM_001081557	100072	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	4.765	2.671	1.427	4.060	1.943	1.625	2.642	2.922	2.654	3.182	1.093	1.547	2.146	4.046	3.146	2.981	2.478	1.790	1.962	1.739	1.145	4.181	2.266	2.819	3.134
3386	chr12	70644380	70646532	+	0	NA	intron (NR_037248, intron 4 of 4)	IMPB_01|Satellite|Satellite	-180058	NM_028127	319710	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	1.049	10.699	5.643	1.026	0.732	0.816	2.003	1.468	1.030	1.518	0.810	0.942	1.913	2.401	1.810	nan	1.714	1.720	1.337	1.849	1.316	0.684	1.225	0.829	1.838
9096	chr2	179804606	179808097	+	0	NA	intron (NM_001316723, intron 4 of 5)	MT2A|LTR|ERVL	170295	NM_001081092	228980	Mm.235542	NM_001081092	ENSMUSG00000039117	Taf4	135kDa|AI450312|TAFII130|TAFII135|Taf2c1|Taf4a	TATA-box binding protein associated factor 4	protein-coding	5.653	4.193	1.863	4.359	2.236	1.106	5.378	5.901	2.637	3.105	2.297	1.884	5.970	5.247	5.472	8.051	5.248	4.658	4.147	2.267	2.553	6.478	1.731	1.759	nan
5302	chr15	73354810	73357643	+	0	NA	intron (NM_007982, intron 2 of 31)	intron (NM_007982, intron 2 of 31)	66965	NM_007982	14083	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FAK|FRNK|Fadk|mKIAA4203|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	4.595	5.353	3.638	3.005	4.615	4.340	9.752	5.236	5.021	4.732	nan	1.878	9.482	6.831	4.888	5.813	5.738	5.850	0.906	1.430	2.021	nan	0.765	1.369	5.608
13472	chr7	106114799	106118520	+	0	NA	Intergenic	Intergenic	-37511	NR_030719	668108	Mm.429088	NR_030719		Gm8979	EG668108|Gm21884	very large inducible GTPase 1 pseudogene	pseudo	0.989	1.255	0.368	1.069	0.472	0.396	1.655	4.038	1.412	1.493	8.562	2.722	0.975	1.784	2.084	nan	1.276	1.363	nan	0.495	0.165	0.671	0.453	0.263	0.951
317	chr1	75137841	75140183	+	0	NA	intron (NM_026977, intron 6 of 8)	B2_Mm1a|SINE|B2	3356	NM_026977	69171	Mm.28193	NM_026977	ENSMUSG00000033159	Cnppd1	1810031K17Rik|AU043960	cyclin Pas1/PHO80 domain containing 1	protein-coding	15.684	17.516	3.805	16.676	5.108	3.374	12.158	11.813	8.789	17.574	9.741	4.936	14.109	14.115	14.270	19.983	9.782	14.610	7.611	3.701	4.400	9.305	5.613	6.764	22.229
9090	chr2	178374493	178379968	+	0	NA	intron (NM_177191, intron 21 of 43)	Lx3B|LINE|L1	30428	NM_177191	320558	Mm.70781	NM_177191	ENSMUSG00000060445	Sycp2	3830402K23Rik|4930518F03Rik	synaptonemal complex protein 2	protein-coding	7.201	0.314	0.220	3.680	6.876	4.370	8.590	2.090	4.644	7.646	1.832	0.622	6.900	7.842	6.104	nan	9.884	nan	0.778	0.517	0.500	0.326	0.782	0.658	9.218
15856	chrX	159399714	159403474	+	0	NA	Intergenic	L1Md_A|LINE|L1	-12978	NM_001081124	78283	Mm.160079	NM_001081124	ENSMUSG00000041020	Map7d2	1600028E09Rik|2900002G04Rik|5330432J06Rik|C030036K04Rik|Mtap7d2	MAP7 domain containing 2	protein-coding	2.721	0.316	0.338	1.798	1.857	1.171	1.837	2.644	1.841	2.106	0.360	0.515	2.315	3.089	2.350	3.969	3.168	2.384	0.908	0.667	0.518	0.462	0.585	0.615	2.564
9700	chr3	108356055	108359147	+	0	NA	3' UTR (NM_019972, exon 20 of 20)	3' UTR (NM_019972, exon 20 of 20)	-7310	NM_026831	68753	Mm.75201	NM_026831	ENSMUSG00000068745	Mybphl	1110037P11Rik	myosin binding protein H-like	protein-coding	4.449	4.607	2.292	5.848	4.964	4.475	5.150	3.221	3.697	5.872	3.753	2.837	4.607	5.657	nan	4.363	3.863	5.069	2.064	2.193	2.959	3.302	2.866	3.083	6.285
4555	chr14	26661659	26667694	+	0	NA	3' UTR (NM_178668, exon 3 of 3)	3' UTR (NM_178668, exon 3 of 3)	4932	NR_106132	102465773		NR_106132	ENSMUSG00000098751	Mir7672	Gm27314|mmu-mir-7672	microRNA 7672	ncRNA	3.623	3.019	1.058	4.928	5.369	3.807	2.753	7.237	4.008	4.368	2.878	3.860	3.664	4.745	3.879	nan	nan	5.134	6.857	3.079	3.766	nan	7.621	7.084	5.027
9679	chr3	107260027	107263575	+	0	NA	Intergenic	Intergenic	-17057	NM_026774	68576	Mm.290035	NM_026774	ENSMUSG00000087260	Lamtor5	1110003H18Rik|Hbxip|XIP	late endosomal/lysosomal adaptor, MAPK and MTOR activator 5	protein-coding	0.485	0.657	0.211	0.956	0.670	0.519	0.297	0.288	0.880	6.975	0.354	0.197	0.170	1.193	nan	0.444	0.233	0.880	5.673	1.336	1.654	5.959	1.978	2.772	1.917
3954	chr13	34378986	34393579	+	0	NA	Intergenic	Intergenic	-41100	NM_001033167	73102	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	4.110	nan	0.472	3.212	3.602	1.963	nan	4.657	nan	nan	1.198	0.946	5.150	6.379	5.204	nan	3.792	nan	0.961	0.974	0.681	1.003	1.340	0.841	nan
2071	chr11	32457357	32458878	+	0	NA	intron (NM_173784, intron 1 of 2)	intron (NM_173784, intron 1 of 2)	2745	NM_173784	327900	Mm.260956	NM_173784	ENSMUSG00000044949	Ubtd2	4930571L24|9630054F20Rik|AI645720	ubiquitin domain containing 2	protein-coding	4.057	5.955	3.794	3.608	9.308	5.916	3.406	1.969	1.724	3.951	2.092	0.978	2.894	4.415	1.914	2.716	nan	2.301	0.750	1.747	1.208	0.644	1.218	0.792	2.461
13503	chr7	107826360	107827931	+	0	NA	Intergenic	Intergenic	-3678	NM_146426	258418	Mm.377489	NM_146426	ENSMUSG00000095910	Olfr469	MOR204-21	olfactory receptor 469	protein-coding	2.619	1.292	0.545	2.295	1.644	0.482	5.176	3.834	3.311	2.245	2.334	0.918	4.279	3.612	4.346	2.921	2.426	3.704	nan	0.514	0.371	2.709	0.410	0.585	4.720
10366	chr4	108452550	108454544	+	0	NA	Intergenic	(GGAA)n|Simple_repeat|Simple_repeat	-5879	NM_175472	230594	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	4.488	4.278	0.854	8.977	4.602	3.183	3.332	3.054	4.480	12.134	4.132	3.997	3.103	6.029	6.261	8.011	2.500	8.060	2.501	1.334	1.611	5.300	1.503	3.080	10.514
15483	chr9	107481151	107484750	+	0	NA	intron (NM_001174047, intron 3 of 38)	intron (NM_001174047, intron 3 of 38)	46214	NR_039580	100628590		NR_039580	ENSMUSG00000092761	Mir5120	mmu-mir-5120|mu-mir-5120	microRNA 5120	ncRNA	6.213	5.945	1.785	5.997	4.605	3.158	5.433	7.366	nan	5.270	6.626	4.091	4.549	7.171	5.666	6.864	4.196	5.701	4.447	3.814	3.336	4.846	2.869	2.732	8.395
10271	chr4	94411126	94416614	+	0	NA	Intergenic	Intergenic	142926	NM_026368	67770	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	2.853	nan	0.450	3.319	1.597	0.796	1.187	1.627	nan	2.053	1.501	2.214	1.249	1.720	nan	2.125	1.268	2.906	6.262	7.028	4.389	nan	4.052	2.487	1.946
12659	chr6	120061025	120066308	+	0	NA	Intergenic	Intergenic	-25011	NM_001185021	232341	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	9.514	6.079	3.377	6.818	5.994	5.302	7.917	8.663	6.105	7.668	2.577	1.764	7.391	10.325	7.611	10.366	8.755	7.738	2.542	3.504	3.378	2.684	nan	2.214	6.967
12106	chr6	30350971	30352767	+	0	NA	Intergenic	B3|SINE|B2	39141	NM_172735	232679	Mm.29780	NM_172735	ENSMUSG00000039130	Zc3hc1	1110054L24Rik|AU018540|AU019789|HSPC216|Nipa	zinc finger, C3HC type 1	protein-coding	10.990	7.331	2.736	9.264	5.333	4.458	11.578	8.779	6.106	9.521	5.887	4.473	8.407	10.666	11.418	12.712	10.551	8.733	nan	5.982	5.752	6.889	5.365	6.170	11.535
5816	chr16	14372435	14373924	+	0	NA	intron (NM_008576, intron 1 of 30)	intron (NM_008576, intron 1 of 30)	11621	NM_008576	17250	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	3.371	1.159	0.800	3.420	1.576	2.007	1.763	4.682	2.969	2.691	3.649	3.807	3.149	4.228	1.875	3.812	2.442	3.594	1.781	1.839	2.403	2.081	1.202	1.139	2.567
10992	chr4	155027825	155029521	+	0	NA	Intergenic	(A)n|Simple_repeat|Simple_repeat	-17689	NM_001113360	269615	Mm.379458	NM_175556	ENSMUSG00000029055	Plch2	A930027K05Rik|PLCeta2|Plc-eta2|Plcl4	phospholipase C, eta 2	protein-coding	3.323	6.885	1.317	4.053	1.308	1.027	3.959	6.701	1.565	3.634	2.089	1.507	4.450	6.297	5.135	4.889	2.838	4.051	6.438	1.375	1.118	7.079	4.247	3.875	7.063
6784	chr17	65959763	65964777	+	0	NA	Intergenic	Intergenic	-11083	NM_023053	65960	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	7.717	7.732	1.912	10.462	5.723	4.220	8.421	7.068	5.860	14.804	5.733	3.486	7.323	9.458	8.675	9.989	6.822	10.073	4.815	2.382	2.743	4.550	3.133	4.533	12.778
3896	chr13	24378881	24389057	+	0	NA	intron (NM_001284519, intron 2 of 17)	L1M2|LINE|L1	-31153	NM_007717	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.382	0.763	0.379	0.469	0.340	0.175	0.469	0.556	0.431	0.404	0.436	0.375	0.164	0.336	0.357	0.654	0.362	0.589	2.782	2.598	1.865	6.343	3.128	2.001	0.562
1007	chr1	187780634	187782167	+	0	NA	intron (NM_001243792, intron 1 of 7)	intron (NM_001243792, intron 1 of 7)	172394	NM_001243792	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	3.997	0.398	0.086	1.661	1.136	0.495	2.200	1.590	1.652	1.971	0.344	0.280	3.636	4.062	2.203	3.631	3.283	1.980	0.682	0.805	0.400	0.885	0.700	0.367	2.060
1443	chr10	75493937	75496891	+	0	NA	Intergenic	Intergenic	21967	NM_175133	68778	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	6.327	7.721	4.845	nan	3.354	2.477	5.317	5.134	2.854	4.613	2.894	2.841	3.369	4.759	nan	5.500	5.658	4.704	5.300	4.570	7.196	5.587	6.077	6.517	7.719
4441	chr13	117812632	117814743	+	0	NA	intron (NM_010408, intron 3 of 7)	intron (NM_010408, intron 3 of 7)	-93676	NR_045508	71100	Mm.414841	NR_045508	ENSMUSG00000079048	4933413L06Rik	-	RIKEN cDNA 4933413L06 gene	ncRNA	7.863	19.103	6.874	9.786	4.915	2.742	6.952	5.723	5.509	13.500	7.174	2.072	6.376	8.222	6.822	9.670	5.229	8.040	2.215	2.512	2.600	2.467	2.613	3.403	16.619
6141	chr16	57641317	57644977	+	0	NA	intron (NM_007739, intron 2 of 3)	intron (NM_007739, intron 2 of 3)	-36280	NM_025599	66497	Mm.425976	NM_025599	ENSMUSG00000022748	Cmss1	1110001A06Rik|2610528E23Rik|4930572F24Rik|AV099812|AV122629	cms small ribosomal subunit 1	protein-coding	7.337	0.546	0.389	3.304	3.214	1.241	4.727	5.002	3.349	4.672	1.149	0.493	5.594	5.492	7.041	8.538	4.289	5.693	nan	0.680	0.575	0.783	1.131	0.522	6.387
1186	chr10	24499280	24503284	+	0	NA	Intergenic	Lx2|LINE|L1	-94160	NM_010217	14219	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	1.685	0.741	0.575	0.554	0.400	0.280	0.693	0.762	0.755	0.921	2.745	2.070	0.802	0.815	0.748	0.859	0.660	0.685	7.126	3.857	2.878	5.990	3.820	2.692	1.024
8456	chr2	92228930	92230123	+	0	NA	intron (NM_001346704, intron 5 of 18)	intron (NM_001346704, intron 5 of 18)	7964	NM_001109690	192285	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	3.637	3.493	1.852	5.893	1.986	1.759	4.199	4.884	2.496	6.655	1.844	1.659	2.608	3.658	5.308	5.623	4.295	5.069	4.359	3.141	3.305	6.695	3.929	4.374	11.036
7220	chr18	46780255	46781975	+	0	NA	intron (NM_009681, intron 5 of 5)	intron (NM_009681, intron 5 of 5)	39239	NM_001303015	11777	Mm.312536	NM_009681	ENSMUSG00000024480	Ap3s1	-	adaptor-related protein complex 3, sigma 1 subunit	protein-coding	4.562	1.107	1.014	4.246	2.598	1.377	1.950	3.409	2.942	2.862	1.148	1.018	3.882	4.614	3.167	3.981	2.853	3.157	2.171	1.266	1.914	2.148	1.856	1.697	5.605
2240	chr11	57797111	57798713	+	0	NA	intron (NR_131042, intron 1 of 3)	intron (NR_131042, intron 1 of 3)	3555	NR_131042	76516	Mm.28485	NR_131042	ENSMUSG00000087165	2010001A14Rik	-	RIKEN cDNA 2010001A14 gene	ncRNA	2.692	0.869	0.273	1.289	1.230	1.334	4.723	2.427	1.839	1.808	1.382	0.757	3.938	3.684	4.123	4.308	3.209	2.897	nan	0.458	0.561	0.642	0.779	0.526	5.724
9741	chr3	121250550	121252503	+	0	NA	intron (NM_178936, intron 1 of 7)	intron (NM_178936, intron 1 of 7)	11790	NM_178936	99887	Mm.26088	NM_178936	ENSMUSG00000028132	Tmem56	4930577M16Rik|AU018104|AW109744|C730036B01Rik	transmembrane protein 56	protein-coding	2.579	1.332	0.771	2.787	2.106	1.267	4.503	2.751	2.162	2.388	1.913	2.040	3.462	5.587	3.223	3.483	1.745	4.327	0.861	0.520	0.388	0.601	nan	0.412	nan
5241	chr15	61284427	61287243	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-364565	NM_001081067	117586	Mm.291499	NM_001081067	ENSMUSG00000022347	A1bg	C44	alpha-1-B glycoprotein	protein-coding	3.080	0.862	0.594	nan	1.137	0.528	3.326	6.230	2.342	nan	5.879	3.227	2.527	2.091	3.223	2.042	2.343	2.560	1.504	0.855	0.404	1.498	0.785	0.442	1.393
12237	chr6	52112688	52116394	+	0	NA	TTS (NR_110440)	TTS (NR_110440)	11592	NR_110440	102635415	Mm.333063	NR_110440	ENSMUSG00000085412	Halr1	Gm15055|Haunt|Linchoxa1|OTTMUSG00000018881|linc-Evx1|linc-Hoxa1|linc1547	Hoxa adjacent long noncoding RNA 1	ncRNA	4.456	2.838	1.330	8.027	3.052	1.668	1.537	1.147	2.483	4.113	1.503	0.835	1.205	2.831	2.261	3.416	1.534	3.339	nan	1.105	0.607	0.812	0.425	0.534	4.026
12194	chr6	41492892	41499245	+	0	NA	Intergenic	L1_Mur2|LINE|L1	-25708	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	1.653	7.081	1.868	1.340	0.485	0.154	4.640	3.181	1.428	1.463	3.455	1.399	2.559	1.862	3.153	nan	1.258	nan	nan	0.861	0.399	nan	nan	0.375	nan
4222	chr13	63394233	63407959	+	0	NA	intron (NM_001282942, intron 1 of 13)	intron (NM_001282942, intron 1 of 13)	30649	NM_001347515	14088	Mm.126106	NM_007985	ENSMUSG00000021461	Fancc	Facc	Fanconi anemia, complementation group C	protein-coding	1.943	1.396	0.502	2.382	1.188	0.465	1.250	1.620	1.599	1.597	2.439	1.291	1.166	1.532	1.606	nan	0.745	2.196	4.219	1.491	1.100	4.844	1.866	1.464	2.302
7748	chr19	38029560	38031826	+	0	NA	intron (NM_001302140, intron 1 of 53)	RLTR26C_MM|LTR|ERVK	12884	NM_001099634	226101	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	6.454	1.802	1.501	3.891	4.175	2.110	6.740	6.431	4.834	5.680	6.353	4.868	5.980	7.678	5.152	5.398	5.393	5.757	0.683	1.447	0.922	1.423	1.044	0.663	4.548
2573	chr11	86297034	86299704	+	0	NA	exon (NM_001080931, exon 16 of 30)	exon (NM_001080931, exon 16 of 30)	-40801	NM_027421	70422	Mm.171304	NM_027421	ENSMUSG00000018068	Ints2	2810417D08Rik|AA408260|AI987735|mKIAA1287	integrator complex subunit 2	protein-coding	7.358	6.946	2.756	8.247	3.516	2.172	4.622	6.017	5.187	6.928	4.709	3.272	4.827	8.641	6.368	7.630	5.714	6.479	3.754	2.047	2.063	4.757	2.408	2.645	7.315
14989	chr9	42810761	42812478	+	0	NA	intron (NM_175481, intron 2 of 20)	intron (NM_175481, intron 2 of 20)	132752	NM_175481	110637	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	5.550	1.037	0.454	1.786	0.514	0.503	1.349	2.255	3.194	3.750	3.615	1.143	3.225	4.138	2.550	5.386	nan	4.511	nan	0.303	0.071	0.702	0.553	0.274	5.410
11530	chr5	106124467	106133319	+	0	NA	Intergenic	ID4_|SINE|ID	-192447	NR_136913	102635633	Mm.383511	NR_136913	ENSMUSG00000105508	Gm32921	-	predicted gene, 32921	ncRNA	8.535	7.892	3.584	8.169	6.173	4.121	8.880	8.082	5.402	8.992	3.224	2.751	7.210	11.108	8.634	8.776	6.919	8.248	nan	2.118	2.689	3.341	2.836	3.523	9.335
2984	chr11	115567175	115571450	+	0	NA	intron (NM_001002929, intron 5 of 18)	intron (NM_001002929, intron 5 of 18)	4868	NM_001002929	445007	Mm.4379	NM_001002929	ENSMUSG00000020739	Nup85	Pcnt1|frount	nucleoporin 85	protein-coding	7.268	13.445	7.451	6.216	6.986	4.609	nan	5.081	4.625	nan	4.790	3.001	4.119	7.026	5.385	6.517	4.865	5.212	4.436	nan	4.555	4.338	4.143	5.285	6.782
7930	chr2	4493884	4495240	+	0	NA	intron (NM_001347086, intron 5 of 24)	intron (NM_001347086, intron 5 of 24)	-65192	NM_001177844	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	6.046	2.458	0.993	4.254	2.382	2.329	3.066	3.474	2.790	3.419	1.079	1.064	5.380	4.252	4.139	6.978	5.712	6.349	1.414	0.914	1.257	1.265	1.574	1.104	6.651
9528	chr3	95093907	95103729	+	0	NA	intron (NM_001293707, intron 1 of 14)	intron (NM_001293707, intron 1 of 14)	8112	NM_001293707	18720	Mm.296409	NM_008847	ENSMUSG00000028126	Pip5k1a	PI4P5K-I[a]|PIP5K1-alpha|PIP5KIalpha|Pipk5a	phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha	protein-coding	3.671	1.198	1.002	1.599	2.683	1.532	2.715	6.014	2.274	2.578	nan	1.531	2.966	3.993	2.797	nan	2.661	3.306	1.915	1.283	1.015	1.111	1.439	1.431	3.627
10110	chr4	57124571	57129595	+	0	NA	intron (NM_019427, intron 1 of 15)	intron (NM_019427, intron 1 of 15)	16073	NM_019427	54357	Mm.28217	NM_019427	ENSMUSG00000028434	Epb41l4b	6430543G08Rik|AA589614|AU021054|BB007528|D4Ertd346e|Ehm2|Epb4.1l4b|Lulu2	erythrocyte membrane protein band 4.1 like 4b	protein-coding	2.953	nan	0.715	1.373	0.844	0.668	nan	3.811	1.612	1.300	0.389	0.714	3.424	2.859	3.878	4.307	2.087	2.724	nan	1.099	0.915	5.088	1.347	0.647	4.392
3988	chr13	37922098	37926175	+	0	NA	intron (NR_033615, intron 8 of 9)	intron (NR_033615, intron 8 of 9)	35265	NM_001177869	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	5.465	nan	1.277	4.843	4.462	2.100	3.772	5.567	nan	5.487	5.625	2.832	4.313	7.819	5.424	6.413	4.000	5.795	2.388	2.136	1.525	2.270	1.564	0.972	7.981
10094	chr4	53843067	53844062	+	0	NA	intron (NM_028053, intron 2 of 5)	intron (NM_028053, intron 2 of 5)	17519	NM_028053	52076	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	3.552	nan	0.132	2.202	1.241	0.423	nan	2.770	2.748	2.100	0.649	0.681	2.774	3.192	2.446	3.926	1.587	2.800	nan	0.282	0.294	0.765	0.215	0.508	2.001
6167	chr16	84991910	84997225	+	0	NA	intron (NM_007471, intron 11 of 15)	intron (NM_007471, intron 11 of 15)	22356	NR_045889	100038614	Mm.441351	NR_045889		Gm10791	ENSMUSG00000074933	predicted gene 10791	ncRNA	6.714	nan	0.343	3.970	2.152	1.118	2.861	3.911	5.265	4.794	2.228	0.685	5.722	6.155	5.690	6.483	4.834	nan	0.876	0.765	0.603	nan	0.524	0.263	8.009
4347	chr13	102511186	102517003	+	0	NA	Intergenic	L1VL4|LINE|L1	-179464	NM_008533	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly78|RP105	CD180 antigen	protein-coding	4.591	1.292	0.615	4.407	3.328	2.033	2.267	3.133	3.651	3.385	1.772	1.177	3.622	3.279	3.313	4.655	3.401	nan	1.296	1.004	0.865	0.913	0.615	0.477	4.560
13998	chr8	11320602	11325334	+	0	NA	intron (NM_009932, intron 3 of 47)	intron (NM_009932, intron 3 of 47)	-10142	NM_009931	12826	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	5.972	1.699	0.655	4.576	7.886	4.032	4.721	5.310	4.644	4.386	3.404	2.166	4.830	5.386	5.353	5.255	3.075	6.220	0.794	1.040	0.727	1.088	0.558	0.231	6.886
11642	chr5	118914364	118917818	+	0	NA	Intergenic	Intergenic	-36248	NR_040694	74627	Mm.410828	NR_040694	ENSMUSG00000107144	4930413E15Rik	-	RIKEN cDNA 4930413E15 gene	ncRNA	2.656	2.908	2.151	3.352	5.466	3.013	5.091	2.694	3.614	4.852	2.970	2.699	2.830	4.585	2.747	2.403	1.411	2.416	nan	nan	1.164	0.411	nan	0.686	2.868
10262	chr4	89033159	89036524	+	0	NA	Intergenic	Intergenic	-15466	NR_033533	100040617	Mm.171720	NR_033533	ENSMUSG00000085183	Gm12603	OTTMUSG00000007693	predicted gene 12603	ncRNA	2.614	nan	0.530	1.588	2.059	1.582	2.393	1.841	nan	2.571	1.100	0.811	2.342	5.874	3.600	2.602	1.210	3.852	1.184	nan	1.684	2.107	0.472	0.705	nan
13446	chr7	99815902	99819514	+	0	NA	intron (NM_016720, intron 2 of 2)	MMVL30-int|LTR|ERV1	10709	NM_016720	50877	Mm.103703	NM_016720	ENSMUSG00000035239	Neu3	-	neuraminidase 3	protein-coding	10.587	12.369	4.895	11.130	6.841	4.307	8.951	11.787	6.051	9.911	9.074	4.200	9.038	10.873	10.589	9.714	7.567	10.304	nan	4.282	3.740	6.560	5.694	5.147	12.761
4239	chr13	72086307	72089157	+	0	NA	Intergenic	Lx8|LINE|L1	-124009	NM_010573	16371	Mm.316056	NM_010573	ENSMUSG00000060969	Irx1	-	Iroquois related homeobox 1 (Drosophila)	protein-coding	3.087	0.253	0.316	1.833	1.197	0.893	4.186	2.339	2.444	3.138	0.302	0.385	4.440	3.047	2.388	5.341	2.648	3.812	0.460	0.704	0.518	0.534	0.211	0.136	5.021
908	chr1	178761916	178764256	+	0	NA	intron (NM_001161665, intron 4 of 14)	intron (NM_001161665, intron 4 of 14)	233961	NM_001161665	269152	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	9.874	1.866	1.219	3.700	3.322	1.745	5.225	7.675	5.178	5.452	3.035	4.040	8.265	6.416	6.372	8.248	6.365	5.836	1.254	0.644	0.400	0.517	0.829	0.985	4.046
14237	chr8	59989623	59992468	+	0	NA	Intergenic	L1_Mus2|LINE|L1	165396	NR_126087	75017	Mm.60775	NR_126087	ENSMUSG00000110406	4930470O06Rik	-	RIKEN cDNA 4930470O06 gene	ncRNA	6.285	13.858	6.549	4.891	5.984	3.960	4.754	6.269	3.403	7.822	6.014	3.468	4.693	6.027	5.401	7.541	6.928	5.398	5.359	3.745	4.515	6.929	3.808	4.703	11.110
10418	chr4	117551187	117556622	+	0	NA	intron (NM_001285899, intron 2 of 8)	intron (NM_001285899, intron 2 of 8)	3539	NM_080469	140546	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	1.068	0.760	0.217	1.414	0.729	0.470	1.267	0.998	0.824	1.916	0.466	0.455	0.675	1.283	1.277	nan	0.808	1.374	7.591	2.994	1.827	3.060	6.358	4.477	2.400
3127	chr11	120808968	120817297	+	0	NA	intron (NM_007988, intron 25 of 42)	intron (NM_007988, intron 25 of 42)	11415	NM_007988	14104	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	2.762	nan	0.768	2.640	1.798	0.954	nan	4.316	1.756	nan	2.909	1.822	2.003	2.226	2.469	2.758	1.352	nan	5.202	nan	2.149	7.330	2.312	2.329	3.841
284	chr1	72629314	72631207	+	0	NA	intron (NM_018817, intron 16 of 16)	MLTR11B|LTR|ERVK	47009	NM_018817	54380	Mm.274232	NM_018817	ENSMUSG00000039354	Smarcal1	6030401P21Rik|AI851716|Mharp	SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1	protein-coding	11.769	6.089	2.799	5.745	3.076	1.450	6.664	6.472	4.972	6.354	5.735	2.885	6.879	6.712	6.180	10.105	7.710	6.677	4.298	3.382	1.404	4.675	4.691	2.195	7.606
4151	chr13	54525086	54529844	+	0	NA	intron (NM_176987, intron 2 of 9)	intron (NM_176987, intron 2 of 9)	23660	NM_176987	319719	Mm.376151	NM_176987	ENSMUSG00000043183	Simc1	4732471D19Rik	SUMO-interacting motifs containing 1	protein-coding	nan	6.237	4.219	1.141	0.293	0.130	2.071	2.513	1.334	1.051	0.275	0.654	1.731	nan	1.907	2.342	1.333	nan	8.143	5.706	3.776	8.068	7.381	5.346	nan
3870	chr13	20616934	20622377	+	0	NA	Intergenic	Intergenic	146665	NM_198093	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.527	1.576	0.778	0.487	0.175	0.023	0.645	0.840	0.493	0.406	0.309	0.196	0.643	nan	0.699	0.718	nan	0.941	2.633	0.922	0.521	5.434	1.424	0.986	nan
903	chr1	174478781	174481647	+	0	NA	Intergenic	Intergenic	-21611	NM_019445	54418	Mm.330620	NM_019445	ENSMUSG00000028354	Fmn2	AU024104	formin 2	protein-coding	6.551	4.370	0.820	4.478	3.671	1.720	2.683	7.708	3.685	4.922	3.947	1.635	6.310	6.471	6.397	11.369	6.448	6.250	2.115	1.452	1.294	2.351	1.420	0.901	7.895
12832	chr6	143126595	143129796	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	-28043	NM_001109688	74741	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	nan	3.022	2.221	3.447	3.370	1.749	3.000	2.744	3.720	4.321	0.784	1.106	4.726	5.861	5.180	7.616	5.408	4.160	2.072	nan	0.625	nan	1.428	0.984	5.265
5397	chr15	78231320	78238954	+	0	NA	Intergenic	Intergenic	-9674	NM_008677	17972	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	11.722	3.924	1.231	7.307	2.564	1.602	12.837	15.428	5.550	7.552	nan	2.960	14.314	13.181	12.725	12.152	10.177	10.629	4.765	2.484	2.146	nan	3.283	2.144	16.382
9899	chr4	6291993	6299650	+	0	NA	Intergenic	L1_Mus3|LINE|L1	-20190	NM_007824	13122	Mm.57029	NM_007824	ENSMUSG00000028240	Cyp7a1	-	cytochrome P450, family 7, subfamily a, polypeptide 1	protein-coding	7.333	3.482	1.685	4.794	5.178	2.772	4.512	4.925	5.506	6.010	4.559	3.488	4.331	5.607	4.552	5.408	4.448	6.600	3.975	nan	1.738	3.520	3.624	2.402	5.023
3927	chr13	31648649	31652917	+	0	NA	Intergenic	Intergenic	24967	NM_010225	14238	Mm.125548	NM_010225	ENSMUSG00000038402	Foxf2	FREAC2|Fkh20|LUN	forkhead box F2	protein-coding	7.623	2.079	0.643	5.957	2.974	2.210	10.699	10.459	6.176	14.025	10.930	6.306	9.657	12.140	9.668	11.109	5.203	10.367	1.080	0.626	0.982	1.419	0.887	1.277	16.659
8286	chr2	60688403	60691818	+	0	NA	intron (NM_001159564, intron 1 of 17)	intron (NM_001159564, intron 1 of 17)	-16417	NM_021359	16420	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	5.660	1.115	0.342	4.496	2.120	0.855	3.269	4.994	3.727	4.018	3.052	1.765	5.003	6.115	4.701	6.477	4.864	6.455	1.344	0.783	0.467	1.220	0.922	0.551	8.529
11255	chr5	64230912	64232716	+	0	NA	intron (NM_001289514, intron 1 of 18)	intron (NM_001289514, intron 1 of 18)	1457	NM_001289514	57915	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	3.805	0.470	0.794	1.543	1.788	0.880	2.348	3.234	1.700	2.338	2.061	2.785	1.971	2.411	1.846	2.027	2.753	1.132	3.912	3.142	2.858	nan	6.505	5.512	1.545
5504	chr15	83261086	83266341	+	0	NA	Intergenic	RLTR24|LTR|ERV1	-11939	NM_001004150	239559	Mm.323805	NM_001004150	ENSMUSG00000047878	A4galt	-	alpha 1,4-galactosyltransferase	protein-coding	10.050	10.267	5.298	7.079	5.982	3.777	10.430	11.091	7.997	8.197	4.723	3.456	11.007	11.300	10.055	9.375	8.974	10.387	nan	1.516	1.059	nan	0.853	0.538	8.857
7094	chr18	31793405	31795182	+	0	NA	intron (NM_027101, intron 2 of 3)	B3A|SINE|B2	5117	NM_027101	69241	Mm.279898	NM_027002	ENSMUSG00000024258	Polr2d	2310002G05Rik|2610028L19Rik|HSRBP4|RBP4	polymerase (RNA) II (DNA directed) polypeptide D	protein-coding	7.819	9.657	2.975	6.610	3.807	2.427	4.994	6.655	3.124	5.871	4.983	2.356	5.262	7.865	6.330	8.226	5.824	8.883	nan	2.520	2.564	nan	2.690	2.549	11.559
4411	chr13	111756458	111758352	+	0	NA	intron (NM_011945, intron 11 of 19)	intron (NM_011945, intron 11 of 19)	51578	NM_011945	26401	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	4.178	nan	0.935	2.543	1.978	0.941	2.540	3.042	3.420	2.535	7.917	3.847	2.013	2.155	3.917	5.015	2.564	5.012	1.215	0.893	0.662	nan	0.796	0.600	3.755
9429	chr3	87600092	87607211	+	0	NA	Intergenic	IAPEY3-int|LTR|ERVK	-15100	NM_001003912	213498	Mm.287267	NM_001003912	ENSMUSG00000041977	Arhgef11	B930073M02|E130307F09|PDZ-RhoGEF|Prg|RhoGEF|mKIAA0380	Rho guanine nucleotide exchange factor (GEF) 11	protein-coding	0.254	0.887	0.295	0.417	0.147	0.164	0.334	0.320	0.282	0.339	0.255	0.279	0.187	0.356	0.329	nan	0.224	0.445	6.901	4.764	3.963	6.975	6.983	5.070	0.566
3891	chr13	24203179	24207553	+	0	NA	intron (NM_001311122, intron 2 of 37)	intron (NM_001311122, intron 2 of 37)	75424	NM_001311122	68732	Mm.211047	NM_026825	ENSMUSG00000021338	Carmil1	1110037D04Rik|AI425970|CARMIL|CARML1|D130057M20|Lrrc16|Lrrc16a	capping protein regulator and myosin 1 linker 1	protein-coding	5.899	0.755	0.450	3.974	5.066	4.005	3.465	4.098	5.040	7.061	1.259	0.986	5.254	8.697	2.881	4.305	2.817	7.379	2.029	1.298	1.333	2.545	3.693	3.051	4.667
13959	chr7	152241497	152243182	+	0	NA	Intergenic	Intergenic	6927504	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	1.870	nan	0.368	3.064	3.187	1.437	3.299	3.269	2.464	3.498	4.533	2.087	3.027	4.884	2.403	4.159	1.666	3.217	1.238	0.926	0.582	1.586	nan	1.032	3.573
808	chr1	163848074	163850666	+	0	NA	intron (NM_001305643, intron 11 of 19)	AT_rich|Low_complexity|Low_complexity	69787	NM_010629	16579	Mm.4651	NM_010629	ENSMUSG00000026585	Kifap3	KAP-3|KAP3|SMAP	kinesin-associated protein 3	protein-coding	1.288	9.890	6.538	nan	0.558	0.341	0.762	0.599	nan	0.557	1.826	1.011	nan	0.423	nan	0.903	0.751	0.700	0.876	1.097	0.740	nan	nan	0.630	nan
845	chr1	167860477	167866040	+	0	NA	Intergenic	Intergenic	173700	NM_033652	110648	Mm.330081	NM_033652	ENSMUSG00000026686	Lmx1a	Lmx1.1|dr|dreher|sst	LIM homeobox transcription factor 1 alpha	protein-coding	0.667	7.653	3.766	nan	0.274	0.171	0.339	0.387	nan	0.871	0.569	0.395	nan	0.321	nan	0.892	1.011	0.967	0.825	0.675	0.357	nan	nan	0.206	nan
14629	chr8	116499694	116502318	+	0	NA	Intergenic	RMER19B|LTR|ERVK	-4009	NM_029297	75465	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	6.541	0.395	0.249	0.405	0.453	0.142	6.303	6.576	1.758	2.389	0.381	0.174	6.044	3.388	5.157	2.810	6.864	2.539	1.168	1.121	0.671	1.242	1.848	1.011	9.536
5997	chr16	32007728	32010726	+	0	NA	Intergenic	MLTR14|LTR|ERV1	-5940	NM_177103	320213	Mm.152890	NM_023801	ENSMUSG00000022772	Senp5	6230429P13Rik|A730063F07Rik|AI851888|BB189556|SMT3IP3	SUMO/sentrin specific peptidase 5	protein-coding	4.644	0.775	0.746	1.359	0.884	0.776	3.854	5.215	1.248	1.015	1.078	0.567	nan	2.344	5.061	nan	4.094	2.437	0.569	0.479	0.500	0.468	nan	0.290	4.891
1847	chr10	127067020	127069030	+	0	NA	TTS (NM_009870)	TTS (NM_009870)	2236	NM_025982	67125	Mm.35650	NM_025982	ENSMUSG00000006736	Tspan31	2700085A14Rik|AW742554|Sas	tetraspanin 31	protein-coding	2.904	nan	0.699	1.819	2.678	1.438	1.360	1.154	1.725	1.425	5.700	2.148	1.086	1.796	1.191	1.736	1.637	1.578	0.927	1.380	1.363	0.592	nan	1.067	1.633
7393	chr18	75418158	75420355	+	0	NA	Intergenic	MTB|LTR|ERVL-MaLR	51891	NM_001042660	17131	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	2.658	1.610	0.598	1.593	1.269	0.655	3.830	5.069	2.336	nan	0.723	0.778	4.230	4.109	3.691	4.099	2.526	2.370	0.583	nan	0.139	0.655	0.349	0.364	4.375
11995	chr5	151258062	151263153	+	0	NA	Intergenic	Lx8|LINE|L1	-70414	NM_146258	243362	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	5.265	1.144	0.844	nan	5.332	4.100	4.032	4.016	4.692	4.135	2.460	1.461	4.996	7.168	4.925	5.713	3.325	6.039	1.478	1.422	1.373	1.921	1.472	1.965	4.261
13249	chr7	71498722	71507167	+	0	NA	Intergenic	Intergenic	-406751	NR_130995	78156	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	nan	0.842	0.468	3.021	1.662	1.438	2.672	5.219	3.104	3.716	1.502	1.112	6.610	5.204	4.120	3.881	3.585	3.115	1.966	2.321	1.413	2.538	1.511	1.548	4.177
6788	chr17	66073842	66076193	+	0	NA	intron (NM_001025572, intron 1 of 12)	intron (NM_001025572, intron 1 of 12)	2029	NM_001025572	106585	Mm.34706	NM_001025572	ENSMUSG00000034647	Ankrd12	2900001A12Rik|AI447928|ANCO-2|AV347965|GAC-1|mKIAA0874	ankyrin repeat domain 12	protein-coding	4.684	1.649	1.539	4.412	3.541	3.351	2.430	2.836	nan	2.161	7.794	3.836	1.163	2.499	1.748	1.920	2.001	2.154	1.018	1.828	1.720	0.710	0.808	0.945	2.371
7782	chr19	42191934	42193194	+	0	NA	3' UTR (NM_001164531, exon 12 of 12)	3' UTR (NM_001164531, exon 12 of 12)	9688	NM_018780	54612	Mm.470071	NM_018780	ENSMUSG00000018822	Sfrp5	AI605071|SARP3	secreted frizzled-related sequence protein 5	protein-coding	1.744	0.595	0.784	1.787	4.424	2.990	1.820	4.224	2.493	2.565	1.046	1.078	2.163	3.331	1.941	3.331	4.092	1.708	0.589	0.481	0.851	0.786	0.508	0.555	1.271
4952	chr14	118635116	118636659	+	0	NA	intron (NM_001163676, intron 3 of 29)	intron (NM_001163676, intron 3 of 29)	41044	NM_001163675	239273	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	0.602	0.999	0.590	0.963	0.192		0.604	0.464	1.292	1.743	6.269	3.328	0.304	0.448	nan	0.744	0.211	0.970	3.615	0.435	0.993	2.477	4.661	4.110	1.539
9538	chr3	95452858	95481555	+	0	NA	intron (NM_001037737, intron 5 of 21)	intron (NM_001037737, intron 5 of 21)	-32004	NM_007802	13038	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	12.471	12.280	6.336	11.907	12.908	10.139	10.546	9.385	10.071	11.783	nan	5.089	11.671	13.828	10.067	nan	8.863	11.794	3.054	3.194	3.577	2.729	2.528	2.640	12.058
3227	chr12	25182684	25183861	+	0	NA	Intergenic	Intergenic	54098	NR_045844	432641	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	5.599	9.764	3.479	5.976	4.814	2.164	5.799	3.548	2.250	4.163	3.431	1.496	2.347	5.167	4.066	4.731	4.779	3.846	2.734	2.413	1.973	2.270	3.471	1.952	9.396
12548	chr6	100755705	100762082	+	0	NA	intron (NM_198612, intron 3 of 6)	intron (NM_198612, intron 3 of 6)	54159	NM_198612	232313	Mm.272037	NM_198612	ENSMUSG00000030074	Gxylt2	Glt8d4|Gm152	glucoside xylosyltransferase 2	protein-coding	0.466	9.081	7.117	0.500	0.444	0.337	0.698	0.712	0.686	0.662	0.472	0.421	0.278	0.666	nan	nan	0.777	0.669	nan	nan	0.592	0.440	0.300	0.723	0.380
7012	chr18	10060957	10064027	+	0	NA	Intergenic	L1VL4|LINE|L1	-32343	NM_001038589	59025	Mm.329277	NM_021522	ENSMUSG00000047879	Usp14	2610005K12Rik|2610037B11Rik|AW107924|C78769|ax|nmf375	ubiquitin specific peptidase 14	protein-coding	5.140	0.456	0.381	2.790	3.829	3.585	3.237	1.761	2.892	3.206	1.252	0.459	7.461	7.145	2.821	4.794	6.857	6.001	0.613	0.532	1.078	0.404	0.699	0.940	4.486
2960	chr11	113347284	113349967	+	0	NA	intron (NM_001166503, intron 6 of 9)	intron (NM_001166503, intron 6 of 9)	-138956	NR_040276	319871	Mm.383743	NR_040276	ENSMUSG00000085421	4732490B19Rik	-	RIKEN cDNA 4732490B19 gene	ncRNA	4.806	nan	0.559	1.730	2.121	1.165	nan	5.426	2.028	2.935	7.607	2.443	3.010	3.564	2.492	2.560	3.464	2.256	5.712	nan	4.514	4.966	8.991	6.450	2.187
5913	chr16	23165909	23168875	+	0	NA	Intergenic	Intergenic	20856	NM_009605	11450	Mm.3969	NM_009605	ENSMUSG00000022878	Adipoq	30kDa|APN|Acdc|Acrp30|Ad|GBP28|adipo|apM1	adiponectin, C1Q and collagen domain containing	protein-coding	3.857	1.063	0.598	2.120	1.817	1.285	2.463	5.047	2.654	3.015	4.302	4.657	2.903	2.981	1.789	2.485	2.339	2.772	1.134	1.285	0.771	0.978	nan	1.140	1.598
13895	chr7	148620151	148623500	+	0	NA	Intergenic	Intergenic	3306990	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	3.487	8.646	2.215	nan	2.062	1.086	2.939	5.892	nan	3.021	2.133	1.557	2.879	4.300	3.836	4.810	2.325	4.354	2.992	1.642	1.650	4.311	nan	2.092	6.843
4188	chr13	59600764	59605583	+	0	NA	intron (NM_030153, intron 6 of 22)	RMER4B|LTR|ERVK	17840	NM_030153	78689	Mm.253902	NM_030153	ENSMUSG00000021555	Naa35	A330021G12Rik|A330027C19Rik|AI158944|C030004C14Rik|Mak10	N(alpha)-acetyltransferase 35, NatC auxiliary subunit	protein-coding	4.276	4.992	2.226	2.924	2.118	0.875	2.604	1.584	3.526	4.273	1.054	0.743	4.333	5.101	4.225	4.369	2.719	4.870	2.288	1.146	0.560	1.605	1.324	0.691	6.601
4522	chr14	22318526	22321081	+	0	NA	intron (NM_028275, intron 2 of 6)	intron (NM_028275, intron 2 of 6)	222995	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	8.115	8.997	3.232	8.200	5.796	4.359	5.965	7.238	nan	11.887	6.045	3.781	4.000	7.890	5.624	6.731	3.652	5.122	4.373	4.251	6.012	nan	4.743	7.010	11.270
4250	chr13	75173016	75174060	+	0	NA	Intergenic	L1Md_T|LINE|L1	83551	NM_013628	18548	Mm.1333	NM_013628	ENSMUSG00000021587	Pcsk1	Nec-1|Nec1|PC1|PC3|Phpp-1|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding	0.535	0.477	0.620	0.394	0.327	0.373	0.728	0.543	0.254		0.241	0.063	0.160	0.221	0.220	nan	0.352	0.488	3.977	5.046	7.514	5.386	8.837	11.128	0.312
1493	chr10	79805972	79808809	+	0	NA	intron (NM_023128, intron 3 of 8)	intron (NM_023128, intron 3 of 8)	-13631	NM_030218	78906	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	6.437	1.003	0.770	5.822	3.843	2.803	6.300	10.254	4.049	5.936	7.924	4.526	6.710	10.833	4.360	7.215	3.898	6.215	nan	1.367	1.081	0.988	1.038	0.858	5.789
5438	chr15	79839645	79841623	+	0	NA	Intergenic	RSINE1|SINE|B4	-6301	NM_001013362	504193	Mm.38438	NM_029079	ENSMUSG00000089837	Npcd	Cbx6-Nptxr	neuronal pentraxin chromo domain	protein-coding	2.884	nan	1.560	nan	2.693	1.617	2.884	3.999	1.636	2.781	nan	1.224	2.177	2.393	1.869	2.406	nan	2.608	3.677	3.126	2.831	4.785	6.004	6.330	2.291
5617	chr15	97891222	97893388	+	0	NA	intron (NM_009504, intron 1 of 9)	intron (NM_009504, intron 1 of 9)	15991	NM_009504	22337	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D receptor	protein-coding	5.620	0.835	0.539	0.679	0.642	0.397	1.673	2.946	1.478	0.998	0.622	0.836	2.413	3.882	2.645	nan	3.607	2.177	0.836	0.378	0.373	0.442	0.616	0.449	2.552
6186	chr16	90220989	90223478	+	0	NA	intron (NM_011434, intron 1 of 4)	intron (NM_011434, intron 1 of 4)	1491	NM_011434	20655	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	8.588	8.675	2.753	8.474	3.573	2.264	7.613	9.566	5.525	9.442	3.982	3.051	8.005	9.074	8.790	12.548	6.104	9.791	5.434	2.773	1.940	5.716	2.559	3.031	12.544
8876	chr2	156357955	156359448	+	0	NA	intron (NM_027585, intron 9 of 12)	MuLV-int|LTR|ERV1	34278	NR_024329	347740	Mm.324242	NR_024329		2900097C17Rik	1810005K14Rik|4930563C06Rik	RIKEN cDNA 2900097C17 gene	ncRNA	7.086	0.521	0.438	3.920	1.580	0.351	6.073	3.527	4.955	6.300	1.068	0.726	5.198	3.632	3.514	5.161	5.070	7.260	3.137	1.134	0.410	1.995	1.749	0.745	6.247
2397	chr11	70045899	70047716	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-7317	NM_001291131	11889	Mm.6559	NM_009714	ENSMUSG00000020884	Asgr1	ASGPR1|Asgr|Asgr-1|HL-1	asialoglycoprotein receptor 1	protein-coding	4.540	1.650	0.784	4.306	3.464	1.425	3.456	1.983	1.680	3.011	1.567	0.497	2.183	2.994	3.302	2.754	2.257	2.820	5.049	7.723	4.338	6.758	6.688	4.879	5.022
6105	chr16	45954952	45956433	+	0	NA	Intergenic	Intergenic	54721	NM_001134480	433022	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	2.694	0.512	0.426	0.857	1.273	0.323	2.187	2.773	1.591	1.887	0.824	0.730	2.910	3.397	1.983	3.363	1.650	3.695	0.782	0.718	0.204	0.554	0.741	0.409	1.356
10147	chr4	62068616	62070380	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-15381	NM_001012323	381530	Mm.460005	NM_001012323	ENSMUSG00000078672	Mup20	Gm12560|Mup24|OTTMUSG00000007485|darcin	major urinary protein 20	protein-coding	12.419	12.997	4.123	10.275	5.142	2.460	8.725	7.968	7.821	8.617	7.792	3.694	9.080	12.027	11.230	12.293	6.785	8.680	6.164	3.044	1.791	9.316	3.131	1.846	12.202
4298	chr13	96380460	96382541	+	0	NA	Intergenic	Intergenic	-6794	NM_026173	67463	Mm.86472	NM_026173	ENSMUSG00000021671	Poc5	1200014M14Rik|AV144706	POC5 centriolar protein	protein-coding	4.914	1.046	0.253	3.688	2.496	1.138	2.682	2.176	2.888	4.503	1.947	0.930	2.847	5.189	3.405	3.616	nan	4.795	0.598	0.579	0.514	0.742	0.340	0.249	5.151
8572	chr2	119147723	119156866	+	0	NA	intron (NM_001033136, intron 4 of 12)	intron (NM_001033136, intron 4 of 12)	4740	NM_001033136	67809	Mm.475909	NM_001033136	ENSMUSG00000070730	Rmdn3	1200015F23Rik|AI131757|Fam82a2|Ptpip51|RMD-3|Rmd3	regulator of microtubule dynamics 3	protein-coding	3.094	2.252	0.830	3.204	1.124	0.415	2.176	3.897	1.951	2.400	0.933	0.500	nan	2.050	2.511	nan	3.400	2.978	3.639	3.154	2.657	7.146	5.230	4.623	nan
6412	chr17	25890735	25897619	+	0	NA	intron (NM_139154, intron 2 of 6)	intron (NM_139154, intron 2 of 6)	8050	NR_028042	100043160	Mm.482893	NR_028042		Gm10012	ENSMUSG00000056875	cytochrome c oxidase, subunit VIIc pseudogene	pseudo	0.574	0.522	0.193	1.538	1.015	0.516	0.871	2.017	1.835	1.320	1.545	1.981	0.638	1.955	0.931	nan	0.429	1.034	2.118	1.934	1.761	4.670	1.249	1.024	1.205
7913	chr19	60964162	60968821	+	0	NA	intron (NM_018869, intron 1 of 15)	intron (NM_018869, intron 1 of 15)	76742	NM_018869	14773	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	5.886	4.906	1.799	7.089	3.829	2.815	4.550	nan	4.403	6.431	3.206	1.595	3.334	5.043	nan	5.002	4.003	6.372	2.100	1.489	1.395	2.299	2.334	2.102	nan
7081	chr18	24332044	24334597	+	0	NA	Intergenic	Intergenic	95850	NR_029573	387182		NR_029573	ENSMUSG00000065532	Mir187	Mirn187|mir-187|mmu-mir-187	microRNA 187	ncRNA	3.301	1.117	0.768	1.352	1.529	0.598	4.282	1.691	2.809	1.822	0.885	2.135	2.300	1.763	3.651	2.955	2.244	3.549	nan	0.734	0.603	nan	0.537	0.651	4.688
1715	chr10	110909680	110911853	+	0	NA	Intergenic	Intergenic	-9410	NM_007792	13008	Mm.2020	NM_007792	ENSMUSG00000020186	Csrp2	AW551867|Crp2|SmLim	cysteine and glycine-rich protein 2	protein-coding	nan	13.127	6.680	6.668	4.207	4.301	5.149	4.211	nan	8.377	3.025	3.242	4.128	5.486	5.887	5.159	4.545	5.322	5.699	2.907	3.827	6.074	5.215	7.585	8.345
15134	chr9	58683060	58688859	+	0	NA	intron (NM_028598, intron 2 of 5)	L1Md_T|LINE|L1	55600	NM_028598	73673	Mm.205196	NM_028598	ENSMUSG00000074269	Rec114	2410076I21Rik|4930527A11Rik	REC114 meiotic recombination protein	protein-coding	0.212	0.453	0.319	0.455	0.131	0.084	0.113	nan	0.236	0.210	0.260	0.196	0.079	0.201	0.165	0.440	0.219	0.242	2.955	2.162	1.606	4.161	3.084	2.206	0.505
9709	chr3	108828222	108831540	+	0	NA	intron (NM_011504, intron 1 of 18)	ID_B1|SINE|B4	10621	NM_011504	20912	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	3.790	4.436	1.448	4.637	1.592	0.896	4.915	3.017	3.347	5.596	1.894	2.185	4.070	4.383	6.763	6.490	3.175	5.005	3.986	1.569	1.585	5.852	1.679	1.362	7.177
1613	chr10	93566538	93569206	+	0	NA	intron (NM_175488, intron 9 of 15)	intron (NM_175488, intron 9 of 15)	-21541	NR_045810	74454	Mm.410794	NR_045810	ENSMUSG00000097407	4933408J17Rik	-	RIKEN cDNA 4933408J17 gene	ncRNA	3.054	0.909	0.491	1.713	0.906	0.537	2.653	2.588	2.402	2.137	nan	0.809	3.178	3.649	3.214	4.046	3.490	3.002	nan	0.191	0.421	nan	0.125	0.180	3.909
9580	chr3	97816913	97819227	+	0	NA	intron (NM_001039376, intron 4 of 46)	intron (NM_001039376, intron 4 of 46)	-50056	NM_178080	83679	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	7.058	7.609	1.902	8.335	5.000	3.211	7.639	5.477	4.206	10.520	nan	2.689	7.255	9.486	6.791	8.521	6.648	8.047	2.619	1.742	2.648	1.906	1.902	1.524	11.294
15371	chr9	88332686	88334547	+	0	NA	intron (NM_011851, intron 1 of 8)	(CA)n|Simple_repeat|Simple_repeat	6007	NM_011851	23959	Mm.244235	NM_011851	ENSMUSG00000032420	Nt5e	2210401F01Rik|5'-NT|AI447961|CD73|NT|Nt5|eNT	5' nucleotidase, ecto	protein-coding	7.446	9.094	2.809	8.986	4.262	2.004	4.981	7.199	4.874	9.961	6.619	2.918	5.573	7.580	7.782	9.119	4.943	7.932	5.169	2.655	3.019	5.843	4.125	3.901	12.716
4247	chr13	73940142	73942052	+	0	NA	intron (NM_001308041, intron 5 of 15)	B3|SINE|B2	3286	NM_001308041	105246	Mm.278509	NM_001024508	ENSMUSG00000057649	Brd9	AL022779	bromodomain containing 9	protein-coding	6.322	2.059	1.354	3.904	4.157	2.961	6.495	7.999	5.064	5.690	1.969	2.103	5.635	6.406	6.532	7.074	3.155	7.248	0.704	0.818	0.657	0.597	0.337	0.462	6.807
10896	chr4	148941145	148942628	+	0	NA	intron (NM_027195, intron 13 of 15)	intron (NM_027195, intron 13 of 15)	137494	NM_027195	69743	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	3.285	nan	0.219	1.817	2.092	1.232	3.322	5.064	1.429	1.322	1.664	1.284	1.935	3.945	3.514	3.990	3.110	3.703	2.910	1.029	1.404	1.904	4.325	4.470	6.204
14866	chr9	14415821	14420528	+	0	NA	Intergenic	RLTR19-int|LTR|ERVK	-36932	NM_028013	71946	Mm.41423	NM_028013	ENSMUSG00000037419	Endod1	2210414F18Rik|2310067E08Rik|C85344	endonuclease domain containing 1	protein-coding	4.217	1.857	0.518	6.988	2.190	1.043	5.340	4.791	3.051	5.925	8.145	2.617	1.698	4.000	5.968	5.249	2.405	6.254	1.755	1.124	0.802	1.248	1.258	0.832	11.491
5064	chr15	12753581	12755007	+	0	NA	Intergenic	MTC|LTR|ERVL-MaLR	70363	NM_029998	77877	Mm.207311	NM_029998	ENSMUSG00000022195	6030458C11Rik	-	RIKEN cDNA 6030458C11 gene	protein-coding	7.496	12.367	3.338	7.662	2.040	0.800	6.553	7.088	4.031	6.397	4.604	2.833	6.198	5.456	8.035	7.508	4.795	7.268	5.000	1.565	2.412	5.549	3.137	2.769	11.935
6675	chr17	46689262	46693909	+	0	NA	intron (NM_009358, intron 2 of 14)	URR1B|DNA|hAT-Charlie	10405	NM_001277312	17256	Mm.329083	NM_010787	ENSMUSG00000002768	Mea1	Mea-1	male enhanced antigen 1	protein-coding	5.829	9.288	2.579	9.395	5.208	3.512	6.882	6.026	3.919	9.361	4.444	3.558	4.650	6.811	8.757	8.747	nan	6.870	5.956	3.167	3.544	7.352	5.000	5.318	14.160
1406	chr10	69111504	69118939	+	0	NA	Intergenic	MTEb|LTR|ERVL-MaLR	-93331	NM_001252636	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	6.659	0.923	0.765	3.541	5.554	3.860	6.948	3.550	5.117	6.968	1.928	1.987	6.336	6.743	6.727	7.206	5.515	nan	1.097	0.740	0.793	1.156	1.320	1.359	6.528
1104	chr10	13588185	13589964	+	0	NA	Intergenic	Intergenic	-35932	NM_001347361	56535	Mm.282711	NM_019961	ENSMUSG00000019809	Pex3	1700014F15Rik|2810027F19Rik|2900010N04Rik	peroxisomal biogenesis factor 3	protein-coding	6.257	7.319	3.058	6.313	2.568	2.288	4.032	4.392	4.753	6.992	5.191	4.355	4.358	4.938	5.382	8.499	4.416	5.545	4.251	1.793	3.606	5.853	2.249	3.011	8.235
11938	chr5	145528754	145531540	+	0	NA	Intergenic	L1Md_F2|LINE|L1	54583	NM_017396	53973	Mm.379071	NM_017396	ENSMUSG00000075551	Cyp3a41a	Cyp3a41	cytochrome P450, family 3, subfamily a, polypeptide 41A	protein-coding	6.836	8.218	1.922	7.279	2.751	0.881	6.491	6.479	nan	7.774	4.574	2.546	4.850	7.525	6.808	7.114	3.973	6.531	3.838	1.304	1.644	4.950	2.634	2.163	nan
7120	chr18	35078373	35082878	+	0	NA	Intergenic	PB1D10|SINE|Alu	-38287	NM_009818	12385	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	7.146	1.499	1.017	2.602	3.277	2.050	5.799	9.541	3.666	2.629	3.503	1.864	6.079	4.245	4.140	4.238	5.898	5.092	1.290	0.964	1.059	0.993	1.490	1.293	5.048
11031	chr5	17351642	17356618	+	0	NA	Intergenic	Lx3_Mus|LINE|L1	-121992	NM_027609	70935	Mm.332225	NM_027609	ENSMUSG00000058643	Speer4f1	4922502J04Rik|SPEER-4F|Speer4f	spermatogenesis associated glutamate (E)-rich protein 4F1	protein-coding	7.335	0.470	0.393	5.988	6.020	4.569	6.587	5.311	7.396	8.198	1.372	1.249	6.838	8.234	8.495	6.273	7.187	10.657	0.704	1.001	0.910	0.624	0.577	0.461	2.834
9552	chr3	96000756	96004190	+	0	NA	intron (NM_013841, intron 14 of 14)	RSINE1|SINE|B4	-6634	NM_023320	67220	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	8.090	5.474	1.478	5.374	2.306	1.519	12.855	6.533	3.669	5.366	nan	1.622	9.523	8.347	7.613	nan	9.603	7.083	2.987	1.812	1.318	3.416	2.449	2.055	9.235
5092	chr15	31153449	31155991	+	0	NA	Intergenic	Intergenic	-69665	NM_146057	223453	Mm.222867	NM_146057	ENSMUSG00000039168	Dap	4921531N22Rik|AI789753|AU040360	death-associated protein	protein-coding	7.420	10.861	4.004	7.412	2.262	1.146	7.652	8.791	5.368	7.621	5.913	3.693	8.865	6.945	7.280	8.623	5.794	6.971	3.533	1.387	1.592	5.412	2.808	2.195	8.897
7534	chr19	8994171	8997270	+	0	NA	intron (NR_104460, intron 1 of 6)	intron (NR_104460, intron 1 of 6)	6436	NM_001286518	66395	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	7.500	10.748	4.805	6.346	5.697	2.511	6.847	9.239	4.087	6.518	7.320	3.760	4.794	8.364	5.732	6.838	6.932	6.611	1.905	2.864	1.642	3.491	2.957	2.249	9.403
1905	chr11	3994721	3997319	+	0	NA	intron (NM_001177691, intron 1 of 2)	intron (NM_001177691, intron 1 of 2)	6087	NM_001177691	53897	Mm.103414	NM_016922	ENSMUSG00000049721	Gal3st1	Cst|Gcst	galactose-3-O-sulfotransferase 1	protein-coding	7.563	10.010	4.277	8.605	5.260	3.123	7.972	7.635	6.366	7.635	5.443	3.612	8.279	10.304	8.956	10.913	7.349	8.802	5.225	nan	3.557	6.243	3.513	3.694	9.189
13073	chr7	29954415	29956024	+	0	NA	Intergenic	Intergenic	-3326	NM_178384	72723	Mm.371648	NM_178384	ENSMUSG00000059975	Zfp74	2810054M15Rik|KRAB8|Zfp66|Znf569|mszf21|mszf77	zinc finger protein 74	protein-coding	3.482	3.354	1.755	3.123	3.840	1.887	4.188	3.532	1.588	3.559	1.403	1.918	2.340	4.061	4.255	3.577	2.473	3.470	2.313	2.441	1.746	2.979	2.590	2.601	6.727
3203	chr12	16879182	16885603	+	0	NA	Intergenic	Intergenic	-12586	NM_009072	19878	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	10.637	3.130	1.947	5.626	3.448	1.951	7.447	5.912	5.186	5.420	4.030	2.437	7.184	8.984	7.282	10.336	7.112	7.069	0.904	0.836	0.671	0.816	0.583	0.750	9.525
10140	chr4	59839988	59846547	+	0	NA	intron (NM_172468, intron 1 of 8)	intron (NM_172468, intron 1 of 8)	37617	NM_172468	209131	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	3.875	nan	0.746	3.114	4.021	1.508	2.262	2.123	3.504	4.193	0.701	0.486	3.631	4.683	2.622	3.964	1.644	5.105	3.327	1.395	1.368	5.862	3.698	2.396	4.269
12988	chr7	20366471	20370105	+	0	NA	Intergenic	L1VL4|LINE|L1	7122	NM_001166713	435949	Mm.485000	NM_001166713	ENSMUSG00000095806	Gm5728	EG435949|Vmn1r99	predicted gene 5728	protein-coding	5.756	0.644	0.741	4.257	5.973	5.556	4.913	6.178	3.869	5.883	0.815	1.135	4.252	6.031	3.205	3.733	3.901	4.903	2.223	3.494	4.859	4.052	2.003	1.921	4.448
8217	chr2	38678067	38681326	+	0	NA	Intergenic	RSINE1|SINE|B4	32538	NM_001316687	26423	Mm.31387	NM_139051	ENSMUSG00000026751	Nr5a1	Ad4BP|ELP|ELP-3|Ftz-F1|Ftzf1|SF-1|SF1|STF-1	nuclear receptor subfamily 5, group A, member 1	protein-coding	8.735	1.721	1.018	4.642	2.867	1.743	7.563	7.650	5.951	5.574	4.816	4.170	8.105	7.629	7.116	9.344	9.496	6.672	3.301	2.378	0.965	2.223	1.878	1.045	7.867
10580	chr4	129795734	129803572	+	0	NA	Intergenic	MLTR11B|LTR|ERVK	-20826	NM_008974	19244	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	6.330	0.662	0.240	6.640	5.557	3.973	3.792	6.207	4.335	7.925	1.045	0.573	5.761	10.617	nan	7.947	3.458	8.652	2.360	0.982	0.847	1.940	1.178	0.934	9.619
15274	chr9	71501899	71504127	+	0	NA	Intergenic	B4|SINE|B4	-17030	NM_178602	28015	Mm.21094	NM_178602	ENSMUSG00000032199	Polr2m	AA407243|AA408799|AI303746|AW553238|D9Wsu138e|Grinl1a|mKIAA4185	polymerase (RNA) II (DNA directed) polypeptide M	protein-coding	4.432	0.971	0.352	3.364	2.288	0.669	4.134	4.659	3.310	3.540	2.802	1.050	3.215	5.301	5.808	5.679	2.055	5.852	nan	0.495	0.527	0.960	0.313	0.365	6.939
13113	chr7	31673201	31676586	+	0	NA	Intergenic	L1Md_F2|LINE|L1	30861	NM_001198871	100043836	Mm.296883	NM_001198871	ENSMUSG00000094053	Scgb2b7	Abpbg7|Gm4684	secretoglobin, family 2B, member 7	protein-coding	0.673	12.188	8.776	0.653	0.565	0.367	1.095	1.122	0.647	0.767	0.419	0.821	0.676	0.563	0.877	0.891	0.701	1.050	1.368	1.693	1.448	1.724	1.419	0.970	0.687
10384	chr4	114078464	114080076	+	0	NA	Intergenic	Intergenic	-79767	NM_001167876	242627	Mm.484115	NM_001167876	ENSMUSG00000078598	Skint5	OTTMUSG00000008560|Skint-5	selection and upkeep of intraepithelial T cells 5	protein-coding	3.156	1.491	0.690	2.880	1.085	0.517	5.426	2.389	1.134	4.003	0.773	0.638	2.894	4.855	3.814	3.782	2.126	1.906	0.765	1.511	1.967	0.698	0.754	0.692	7.359
10258	chr4	88938328	88943323	+	0	NA	intron (NR_132734, intron 1 of 3)	intron (NR_132734, intron 1 of 3)	1217	NR_132734	106557447	Mm.484668	NR_132734		LOC106557447	-	uncharacterized LOC106557447	ncRNA	3.173	nan	1.762	1.410	0.930	0.518	4.374	nan	nan	1.887	1.772	0.964	1.737	4.762	4.235	2.159	1.229	nan	7.466	nan	4.032	8.294	5.153	6.063	nan
13136	chr7	36138693	36141851	+	0	NA	Intergenic	L1Md_A|LINE|L1	-337283	NM_177739	668501	Mm.286296	NM_177739	ENSMUSG00000044452	Zfp507	1810022O10Rik|A230056M16Rik|AL024009|AU021817|BB105092|Gm480|Znf507|mKIAA1084	zinc finger protein 507	protein-coding	1.708	0.653	0.332	1.044	0.361	0.466	4.028	5.895	2.381	1.184	1.913	4.164	3.363	2.014	2.932	2.199	1.686	2.182	1.118	0.418	0.428	0.966	0.806	0.602	1.200
11211	chr5	44210199	44212922	+	0	NA	intron (NM_173764, intron 2 of 13)	intron (NM_173764, intron 2 of 13)	15046	NM_173764	231225	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	7.357	2.235	0.941	2.782	3.529	1.941	6.143	9.787	3.409	3.666	3.522	1.632	7.455	6.429	6.661	7.228	7.158	5.707	0.743	0.789	0.404	0.585	0.509	0.591	5.422
11566	chr5	112682556	112686163	+	0	NA	Intergenic	B4A|SINE|B4	-94363	NR_045397	67325	Mm.490791	NR_045396	ENSMUSG00000097962	1700034G24Rik	-	RIKEN cDNA 1700034G24 gene	ncRNA	1.217	2.581	0.792	1.995	0.854	0.518	nan	0.544	0.951	1.412	1.416	0.565	0.377	0.971	0.519	0.980	0.557	1.073	4.561	3.415	3.024	7.353	1.945	1.228	1.307
2472	chr11	75432541	75436018	+	0	NA	intron (NM_008878, intron 8 of 9)	B3|SINE|B2	5222	NM_008878	18816	Mm.279733	NM_008878	ENSMUSG00000038224	Serpinf2	AI747498|Pli|Serpimf2	serine (or cysteine) peptidase inhibitor, clade F, member 2	protein-coding	5.564	3.133	2.082	6.076	6.630	5.855	6.416	6.030	5.690	5.459	7.790	5.289	5.203	8.374	nan	nan	3.512	nan	1.291	2.120	nan	3.393	0.779	0.915	5.456
6597	chr17	35770003	35784138	+	0	NA	non-coding (NR_045459, exon 2 of 3)	non-coding (NR_045459, exon 2 of 3)	4620	NR_045459	74601	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	nan	0.703	0.626	3.587	5.943	3.584	7.649	5.474	5.072	5.629	1.807	1.748	5.763	9.840	5.329	6.615	5.719	5.058	0.590	0.918	0.677	0.338	0.501	0.407	7.393
9466	chr3	89140393	89143766	+	0	NA	intron (NM_013631, intron 5 of 10)	intron (NM_013631, intron 5 of 10)	5456	NM_001099779	18770	Mm.383180	NM_013631	ENSMUSG00000041237	Pklr	Pk-1|Pk1|R-PK	pyruvate kinase liver and red blood cell	protein-coding	4.350	2.308	1.126	3.916	1.866	0.697	5.892	3.661	2.941	4.991	2.479	1.603	4.712	5.927	5.690	5.597	4.098	5.403	nan	0.754	0.659	2.242	0.976	0.519	9.289
11527	chr5	106052001	106053402	+	0	NA	Intergenic	MTE2b|LTR|ERVL-MaLR	176133	NM_018759	54367	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	4.223	4.019	0.968	2.985	2.008	0.758	1.461	1.179	2.300	1.761	0.739	0.464	2.136	3.650	2.865	2.338	1.170	2.700	nan	0.802	1.007	0.602	0.646	0.372	2.163
821	chr1	164811821	164829408	+	0	NA	intron (NM_019759, intron 3 of 3)	intron (NM_019759, intron 3 of 3)	23882	NM_019759	56429	Mm.28935	NM_019759	ENSMUSG00000026574	Dpt	1810032B19Rik|5033416F05Rik|EQ-1|Eq1	dermatopontin	protein-coding	7.913	0.710	0.410	6.049	2.850	1.935	5.554	6.752	nan	5.574	2.826	1.156	nan	7.722	nan	7.497	7.839	5.575	0.757	1.253	0.612	nan	nan	0.672	3.753
13452	chr7	104567064	104568535	+	0	NA	Intergenic	Intergenic	3647	NM_147048	259050	Mm.377808	NM_147048	ENSMUSG00000073927	Olfr652	MOR318	olfactory receptor 652	protein-coding	1.696	1.421	0.657	4.008	1.719	1.319	2.422	2.656	1.766	2.439	1.210	0.601	2.761	4.294	2.279	3.939	2.071	2.364	nan	1.171	1.163	2.360	0.928	0.694	4.372
696	chr1	138300011	138302883	+	0	NA	Intergenic	Lx8|LINE|L1	27709	NM_177397	338375	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0.745	0.533	0.643	nan	0.930	0.382	0.617	0.706	0.801	1.050	6.517	2.129	0.488	nan	0.534	nan	0.743	0.780	0.671	0.730	0.410	0.289	0.795	0.332	nan
14832	chr8	129663368	129671403	+	0	NA	Intergenic	Intergenic	403755	NR_144501	102635552		NM_001346808		Gm32856	-	predicted gene, 32856	protein-coding	4.689	nan	0.525	nan	2.779	1.827	5.906	4.264	2.516	2.628	4.359	1.973	7.877	5.162	nan	6.084	6.042	nan	nan	3.125	2.180	nan	3.460	nan	4.635
8466	chr2	93746210	93751349	+	0	NA	intron (NM_010163, intron 8 of 13)	MIRb|SINE|MIR	73789	NM_010163	14043	Mm.4336	NM_010163	ENSMUSG00000027198	Ext2	AI893565	exostoses (multiple) 2	protein-coding	2.555	1.269	0.413	2.096	0.761	0.299	0.727	0.780	0.593	1.338	0.654	0.431	0.431	1.158	0.817	1.063	0.536	1.127	1.651	1.941	1.403	4.817	0.585	0.394	nan
6886	chr17	80623090	80624517	+	0	NA	intron (NM_001290345, intron 16 of 33)	intron (NM_001290345, intron 16 of 33)	-59969	NM_001033443	381113	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	6.024	8.755	5.094	6.496	5.082	5.214	8.573	5.299	5.076	4.549	4.423	4.205	4.882	7.415	8.049	10.018	7.870	5.952	5.427	2.262	3.790	5.052	4.811	7.312	8.721
1721	chr10	111011552	111015717	+	0	NA	Intergenic	L1MB1|LINE|L1	-3568	NM_172554	320150	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|Hip14	zinc finger, DHHC domain containing 17	protein-coding	6.922	1.671	0.659	3.616	6.173	2.839	7.371	7.489	5.910	7.316	6.196	4.882	7.160	9.192	6.807	7.103	6.495	6.023	1.366	1.429	0.667	1.102	1.321	0.872	7.443
6013	chr16	32812444	32819310	+	0	NA	Intergenic	ERVL-int|LTR|ERVL	-5431	NM_001256309	381043	Mm.303864	NM_001256309	ENSMUSG00000094430	Gm933	Gm1743	predicted gene 933	protein-coding	3.706	1.395	0.813	1.887	1.796	1.303	2.552	7.135	2.596	2.443	1.196	1.509	5.014	3.891	3.689	nan	3.636	3.636	1.518	0.752	0.821	0.980	nan	1.043	4.373
11520	chr5	105844485	105845432	+	0	NA	Intergenic	B4A|SINE|B4	-31610	NR_030777	54367	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	5.924	12.069	3.261	10.016	7.347	5.079	6.621	5.883	4.463	15.200	3.558	1.600	4.547	6.270	8.899	9.284	4.641	9.072	7.087	1.208	5.545	6.720	3.994	8.152	11.682
9048	chr2	168411164	168417197	+	0	NA	Intergenic	Intergenic	-144849	NM_001081134	241794	Mm.425102	NM_001081134	ENSMUSG00000074575	Kcng1	AW536275|OTTMUSG00000016048	potassium voltage-gated channel, subfamily G, member 1	protein-coding	2.299	7.086	2.783	2.132	0.834	0.500	1.862	2.840	1.539	1.901	1.260	1.963	1.947	nan	2.219	2.963	1.715	nan	nan	3.103	3.239	6.228	7.354	6.005	nan
8651	chr2	128252743	128257285	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	127439	NM_001284410	12125	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	8.480	8.951	2.865	6.712	4.159	1.470	4.914	6.038	4.563	6.647	11.013	5.079	6.043	8.645	5.525	5.452	4.975	6.500	nan	1.944	0.941	1.489	0.874	0.520	8.776
3376	chr12	70461967	70466020	+	0	NA	intron (NM_028339, intron 6 of 7)	MusHAL1|LINE|L1	10839	NM_028339	72736	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	9.824	8.313	4.819	6.543	4.702	2.921	8.721	6.871	6.140	7.724	4.820	3.207	10.966	11.162	9.663	nan	11.388	8.482	3.769	2.446	2.313	4.276	3.150	2.021	10.024
10849	chr4	144522519	144525512	+	0	NA	intron (NM_198662, intron 3 of 3)	ORR1F|LTR|ERVL-MaLR	4193	NM_198662	381572	Mm.184290	NM_198662	ENSMUSG00000028593	9430007A20Rik	Aadacl4|Gm1034	RIKEN cDNA 9430007A20 gene	protein-coding	2.380	nan	0.803	2.489	3.290	2.649	1.581	1.656	3.037	4.549	3.257	1.296	2.309	4.648	2.329	2.980	1.277	3.575	0.887	0.537	0.451	0.843	0.625	0.670	2.174
11467	chr5	97339992	97343329	+	0	NA	Intergenic	Intergenic	50670	NM_001033191	97243	Mm.11746	NM_001033191	ENSMUSG00000046000	Naa11	Ard1b|Ard2|C80008	N(alpha)-acetyltransferase 11, NatA catalytic subunit	protein-coding	6.338	6.101	2.494	4.879	3.786	2.057	1.849	1.802	3.308	3.441	2.921	1.141	1.869	2.897	2.554	3.167	2.376	3.299	2.271	2.607	1.622	2.862	1.730	1.305	3.174
13450	chr7	104479488	104481972	+	0	NA	intron (NM_199146, intron 4 of 7)	MLTR14|LTR|ERV1	-15537	NM_009099	20128	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	5.314	6.024	1.623	7.248	4.319	2.974	4.309	5.110	3.350	5.614	4.700	2.129	4.175	nan	5.762	6.407	3.396	5.671	nan	2.428	2.305	5.736	2.191	1.911	11.031
1431	chr10	75051154	75056436	+	0	NA	3' UTR (NM_029781, exon 11 of 11)	3' UTR (NM_029781, exon 11 of 11)	-7101	NM_001081412	110279	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	7.778	7.916	3.140	5.879	4.830	2.509	6.151	3.269	4.773	7.370	9.045	2.119	9.439	10.972	6.029	8.691	5.000	6.457	nan	2.987	2.643	1.278	1.891	1.581	11.340
1489	chr10	79723519	79725126	+	0	NA	intron (NM_008226, intron 1 of 7)	intron (NM_008226, intron 1 of 7)	7688	NM_008226	15166	Mm.12956	NM_008226	ENSMUSG00000020331	Hcn2	BCNG2|HAC1|trls	hyperpolarization-activated, cyclic nucleotide-gated K+ 2	protein-coding	11.857	9.126	4.093	9.217	6.749	3.619	10.037	8.248	4.869	8.529	6.754	3.627	7.845	12.223	8.551	9.460	10.340	6.703	4.615	3.786	5.421	4.707	4.908	5.065	13.881
7997	chr2	20886672	20891628	+	0	NA	intron (NM_001128084, intron 5 of 24)	intron (NM_001128084, intron 5 of 24)	78571	NM_001081364	71435	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	5.522	5.555	1.803	8.389	3.540	2.368	4.728	7.772	5.056	10.331	4.685	3.573	6.110	6.145	6.746	9.983	6.046	8.374	6.782	3.358	3.097	6.892	6.163	5.980	13.457
3050	chr11	117841459	117846536	+	0	NA	Intergenic	RSINE1|SINE|B4	-5240	NM_001012273	11799	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	3.563	nan	1.207	2.197	5.503	5.267	nan	2.608	3.277	nan	1.768	1.156	2.089	2.874	1.957	2.177	2.226	nan	0.983	nan	2.096	1.272	1.101	1.535	1.940
13436	chr7	97292900	97297978	+	0	NA	intron (NM_001162477, intron 3 of 9)	Lx3B|LINE|L1	30525	NM_001177412	244144	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	5.879	2.552	2.072	4.364	6.965	4.100	5.269	7.021	4.659	4.236	1.838	2.209	5.886	7.747	5.785	4.850	5.522	5.682	nan	1.683	1.400	1.095	1.736	1.368	2.759
4565	chr14	29317271	29321131	+	0	NA	intron (NM_009785, intron 9 of 37)	MLT1B|LTR|ERVL-MaLR	300993	NM_176920	319476	Mm.95780	NM_176920	ENSMUSG00000045776	Lrtm1	A930016D02Rik	leucine-rich repeats and transmembrane domains 1	protein-coding	7.210	0.853	0.205	2.314	0.814	0.378	6.018	1.681	1.323	3.323	0.525	0.710	2.715	2.381	3.192	2.851	nan	3.890	1.117	0.861	1.238	nan	1.266	1.038	12.177
6752	chr17	56614743	56619282	+	0	NA	intron (NM_028782, intron 10 of 17)	intron (NM_028782, intron 10 of 17)	3617	NM_018730	54217	Mm.11376	NM_018730	ENSMUSG00000057863	Rpl36	-	ribosomal protein L36	protein-coding	nan	nan	0.853	3.071	2.919	2.060	6.921	5.464	2.154	3.011	3.339	1.750	3.468	5.716	6.073	5.725	3.698	2.620	2.431	1.547	1.809	2.901	1.665	1.471	5.385
1805	chr10	120894559	120896587	+	0	NA	intron (NM_177092, intron 1 of 6)	intron (NM_177092, intron 1 of 6)	3398	NM_177092	320183	Mm.169755	NM_177092	ENSMUSG00000051236	Msrb3	D430026P16Rik|I-8-23|MsrB2	methionine sulfoxide reductase B3	protein-coding	4.676	5.494	4.247	3.821	4.056	2.394	2.105	3.501	2.373	2.447	1.550	1.292	2.625	3.719	2.435	3.099	2.714	3.454	1.933	2.788	1.681	2.903	1.494	1.223	3.108
15192	chr9	64547555	64552472	+	0	NA	intron (NM_001134399, intron 5 of 24)	intron (NM_001134399, intron 5 of 24)	164387	NM_001134399	214058	Mm.127721	NM_172522	ENSMUSG00000036466	Megf11	2410080H04Rik|D130061K05	multiple EGF-like-domains 11	protein-coding	5.431	2.446	1.134	2.682	1.484	0.719	3.630	6.019	4.541	3.939	4.982	3.074	2.943	3.585	5.436	4.513	2.801	5.339	nan	0.592	0.273	1.545	0.945	0.543	4.687
3226	chr12	21518183	21519346	+	0	NA	Intergenic	B1_Mur4|SINE|Alu	-101328	NM_011739	22630	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	protein-coding	2.366	0.933	0.495	0.637	0.329	0.056	2.967	0.795	1.817	2.879	0.465	0.084	3.941	3.791	4.252	4.423	3.215	3.601	0.709	0.296	0.218	0.345	0.639	0.241	6.516
1727	chr10	111153879	111157324	+	0	NA	Intergenic	Lx6|LINE|L1	-9201	NM_001003717	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	2.661	0.666	0.335	1.686	3.242	1.897	3.317	2.733	nan	3.616	6.633	5.231	3.438	3.984	3.377	2.963	1.421	4.490	1.343	0.591	0.658	1.853	0.706	0.485	3.315
2922	chr11	107288232	107291574	+	0	NA	intron (NM_145823, intron 5 of 9)	intron (NM_145823, intron 5 of 9)	-100522	NM_001161329	68979	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	4.056	4.156	2.798	2.175	3.573	3.508	3.186	6.267	2.934	nan	7.154	4.424	4.010	4.026	3.049	3.038	2.695	3.153	0.787	0.912	1.651	nan	0.666	0.856	2.591
14604	chr8	113324696	113337122	+	0	NA	Intergenic	RCHARR1|DNA|hAT-Charlie	-186373	NR_110476	78048	Mm.252797	NR_110476		4930571O06Rik	-	RIKEN cDNA 4930571O06 gene	ncRNA	5.651	1.712	0.682	3.715	3.940	2.272	5.508	9.833	4.791	4.932	2.701	2.094	7.467	7.606	6.405	7.712	6.819	5.039	1.358	1.100	1.044	1.644	1.127	0.949	5.785
13854	chr7	145460148	145463760	+	0	NA	Intergenic	Intergenic	147119	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	nan	nan	0.073	nan	0.078		0.382	0.536	nan	0.326	0.253	0.054	0.230	0.337	0.345	0.811	0.375	0.457	3.283	0.998	0.431	3.420	nan	1.348	nan
13508	chr7	108150948	108156776	+	0	NA	Intergenic	L1_Mus3|LINE|L1	6009	NM_001011810	258041	Mm.377336	NM_001011810	ENSMUSG00000108995	Olfr485	MOR204-30P	olfactory receptor 485	protein-coding	6.133	0.927	0.431	3.419	5.244	2.984	5.826	8.130	2.978	3.767	3.490	1.982	5.926	7.510	4.049	nan	4.979	5.485	nan	1.180	1.196	0.800	0.761	0.816	6.651
14222	chr8	48025894	48028621	+	0	NA	Intergenic	Intergenic	-36706	NM_133791	52357	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	5.126	19.354	13.462	5.405	5.313	2.892	4.058	4.683	3.689	3.494	2.803	1.936	6.202	6.088	5.487	6.794	4.333	5.166	6.572	4.934	3.064	7.822	4.383	3.055	4.380
6808	chr17	67499165	67501363	+	0	NA	Intergenic	Intergenic	132459	NM_001033340	240131	Mm.295736	NM_001033340	ENSMUSG00000073375	Lrrc30	Gm326	leucine rich repeat containing 30	protein-coding	3.040	0.431	0.342	1.390	3.451	2.576	7.561	3.079	nan	3.743	2.190	1.399	3.732	5.395	3.226	4.261	3.911	2.788	1.456	1.751	0.451	0.862	2.458	1.817	3.939
14570	chr8	109126216	109152450	+	0	NA	intron (NR_126329, intron 2 of 9)	intron (NR_126329, intron 2 of 9)	64111	NR_126329	628686	Mm.203332	NR_126329	ENSMUSG00000097393	D030068K23Rik	-	RIKEN cDNA D030068K23 gene	ncRNA	8.469	0.736	0.476	5.384	7.687	5.125	6.375	9.746	5.455	6.758	5.872	4.820	8.033	10.984	8.143	10.041	7.609	7.662	4.700	4.098	3.641	nan	4.377	3.545	10.042
9145	chr3	10258011	10259761	+	0	NA	intron (NM_029310, intron 2 of 5)	intron (NM_029310, intron 2 of 5)	42297	NM_029310	75497	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	1.728	2.591	0.803	0.989	0.756	0.069	0.714	0.602	1.041	0.903	4.840	1.476	0.676	0.877	0.758	1.130	0.720	0.984	0.513	0.409	0.221	0.436	0.303	0.071	1.284
6094	chr16	45404424	45409181	+	0	NA	intron (NM_010818, intron 1 of 5)	intron (NM_010818, intron 1 of 5)	2251	NM_010818	17470	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	11.263	4.208	1.424	7.463	5.099	2.674	5.698	9.052	5.872	8.705	4.602	1.567	9.628	9.790	8.152	10.019	6.236	11.393	3.021	1.852	1.149	2.317	2.800	1.816	9.256
11480	chr5	100623311	100625002	+	0	NA	Intergenic	MER21B|LTR|ERVL	50100	NM_027978	71883	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	1.178	0.423	1.152	0.642	0.691	0.546	0.973	1.067	0.649	0.690	0.663	0.313	0.460	0.374	0.312	0.612	0.999	0.485	3.180	3.792	4.752	1.661	7.581	7.037	0.366
4967	chr14	120803133	120807514	+	0	NA	Intergenic	Intergenic	-105871	NM_023579	70572	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5	importin 5	protein-coding	4.091	2.678	1.337	4.186	2.407	0.889	3.517	7.603	4.575	4.606	3.938	2.648	4.971	6.243	nan	7.520	3.709	5.546	1.116	0.759	0.268	0.975	0.472	0.435	6.946
7754	chr19	38169212	38175836	+	0	NA	intron (NM_033614, intron 15 of 21)	intron (NM_033614, intron 15 of 21)	39743	NM_001170959	110855	Mm.450141	NM_033614	ENSMUSG00000024992	Pde6c	cpfl1	phosphodiesterase 6C, cGMP specific, cone, alpha prime	protein-coding	4.640	0.821	0.480	2.316	2.515	1.708	7.644	8.959	2.525	4.473	0.855	2.659	5.063	6.095	5.331	4.589	nan	4.169	2.694	2.161	2.079	3.892	3.548	3.111	5.570
15265	chr9	70526101	70529819	+	0	NA	Intergenic	Intergenic	-14818	NM_026337	66660	Mm.22379	NM_025690	ENSMUSG00000032212	Sltm	5730455C01Rik|5730555F13Rik|9130215G10Rik|Met	SAFB-like, transcription modulator	protein-coding	6.453	5.972	2.049	5.995	3.965	2.865	5.619	5.754	4.700	10.892	4.926	4.523	5.327	6.227	6.311	6.334	4.476	6.710	5.034	2.932	3.183	4.369	5.216	5.658	9.832
1225	chr10	40073269	40075374	+	0	NA	intron (NM_001114332, intron 3 of 5)	intron (NM_001114332, intron 3 of 5)	-49053	NM_144821	215929	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	5.780	2.436	2.412	4.284	5.269	5.177	3.059	3.873	4.773	4.196	6.078	7.451	3.590	4.100	2.924	4.046	5.209	4.054	2.503	2.887	2.897	0.955	2.258	2.550	3.305
6203	chr16	91764081	91765218	+	0	NA	intron (NM_001110275, intron 1 of 28)	intron (NM_001110275, intron 1 of 28)	35278	NM_010587	16443	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	4.450	nan	0.171	2.091	1.286	1.129	0.966	2.138	2.692	2.920	1.964	1.751	4.000	3.545	2.330	2.683	2.777	2.463	1.579	0.812	0.728	nan	0.985	0.521	3.177
2909	chr11	106619763	106626551	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-10227	NM_198292	21763	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	2.011	14.291	8.035	nan	1.348	1.092	0.906	0.963	nan	nan	1.496	0.727	0.833	nan	1.660	1.743	1.297	nan	0.871	2.080	2.205	nan	0.659	0.660	1.878
15586	chr9	119364760	119366091	+	0	NA	intron (NM_001033209, intron 4 of 18)	B3A|SINE|B2	8044	NM_001199568	102448	Mm.219497	NM_001033209	ENSMUSG00000035769	Xylb	AI132223|AI327421	xylulokinase homolog (H. influenzae)	protein-coding	3.464	2.645	1.583	1.593	2.722	0.962	1.968	2.540	1.484	2.078	0.628	0.217	2.345	3.323	1.244	2.826	2.091	2.010	0.487	1.887	0.350	0.306	nan	1.063	4.886
210	chr1	58766841	58774010	+	0	NA	Intergenic	Intergenic	-24949	NM_009812	12370	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	13.068	13.020	7.990	11.019	9.874	7.791	9.240	9.015	8.840	10.533	9.114	5.483	11.323	11.135	9.634	12.554	11.209	10.067	3.855	3.711	3.801	4.265	3.379	3.856	10.357
5220	chr15	59308087	59314033	+	0	NA	non-coding (NR_045613, exon 2 of 2)	non-coding (NR_045613, exon 2 of 2)	-4032	NM_009270	20775	Mm.296169	NM_009270	ENSMUSG00000022351	Sqle	AI323792	squalene epoxidase	protein-coding	6.258	1.404	1.053	nan	3.351	1.698	nan	8.465	4.399	nan	3.200	2.207	9.195	7.678	7.452	6.384	7.183	7.118	1.923	1.109	0.513	1.764	1.891	1.058	5.308
13614	chr7	119386668	119398442	+	0	NA	Intergenic	Intergenic	66717	NM_025989	67133	Mm.46403	NM_025989	ENSMUSG00000030954	Gp2	2310037I18Rik|AV060639	glycoprotein 2 (zymogen granule membrane)	protein-coding	2.449	0.734	0.227	3.630	2.476	1.353	3.997	3.555	3.011	3.361	1.736	0.773	2.937	3.787	4.370	4.725	2.269	5.202	1.587	0.916	0.619	1.129	1.686	1.055	4.849
12641	chr6	118071328	118073850	+	0	NA	intron (NM_027526, intron 1 of 12)	intron (NM_027526, intron 1 of 12)	6204	NM_027526	70727	Mm.87660	NM_027526	ENSMUSG00000030134	Rasgef1a	6330404M18Rik|AI835194	RasGEF domain family, member 1A	protein-coding	6.871	0.622	0.368	4.464	5.603	2.796	14.544	7.131	5.610	5.862	1.403	2.476	14.851	14.804	14.141	13.975	7.480	10.166	2.528	2.321	1.398	2.557	nan	2.124	9.906
5381	chr15	77195406	77199727	+	0	NA	intron (NM_053104, intron 2 of 13)	intron (NM_053104, intron 2 of 13)	-43754	NM_001286418	93686	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	5.486	nan	1.161	3.362	2.591	1.284	5.439	7.269	1.692	nan	nan	2.172	3.830	3.634	3.089	2.464	nan	2.560	2.632	2.202	1.927	nan	3.039	2.662	2.906
6722	chr17	49677476	49679587	+	0	NA	intron (NM_177052, intron 5 of 22)	B4A|SINE|B4	63359	NM_177052	319991	Mm.441340	NM_177052	ENSMUSG00000023999	Kif6	D130004B10Rik|D130084M03Rik	kinesin family member 6	protein-coding	4.033	1.157	0.494	1.281	1.618	0.531	7.914	1.369	1.694	3.136	0.344	0.525	5.118	4.733	2.440	5.150	4.104	2.126	0.387	0.409	0.232	0.564	0.285	0.182	6.536
10517	chr4	125818765	125820810	+	0	NA	Intergenic	Intergenic	102523	NR_015560	72395	Mm.112888	NR_015560	ENSMUSG00000085562	2610028E06Rik	BB043107	RIKEN cDNA 2610028E06 gene	ncRNA	2.262	0.892	0.824	1.753	2.222	2.393	2.131	1.036	2.605	2.792	0.989	0.510	1.607	3.421	1.452	1.682	1.210	2.150	0.867	1.508	1.388	0.754	1.579	2.078	2.180
3365	chr12	58542169	58559132	+	0	NA	Intergenic	LTR16E1|LTR|ERVL	-281392	NM_025809	66864	Mm.280563	NM_025809	ENSMUSG00000045930	Clec14a	1200003C23Rik|AI642649	C-type lectin domain family 14, member a	protein-coding	2.534	nan	0.538	1.372	1.039	0.545	2.945	2.140	1.692	1.389	1.000	2.274	2.853	2.147	nan	nan	3.209	nan	3.176	5.332	3.223	7.935	2.543	1.992	2.503
9587	chr3	98049202	98051575	+	0	NA	intron (NM_010928, intron 2 of 33)	intron (NM_010928, intron 2 of 33)	36850	NM_010928	18129	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	1.839	0.733	0.469	0.938	0.883	0.415	4.589	5.956	1.197	1.572	nan	0.545	3.002	1.955	2.772	4.698	5.167	2.976	1.025	0.620	0.904	0.930	2.244	2.494	1.563
9785	chr3	123210524	123212423	+	0	NA	intron (NM_080451, intron 1 of 4)	ORR1B2|LTR|ERVL-MaLR	24676	NM_080451	118449	Mm.34359	NM_080451	ENSMUSG00000050315	Synpo2	1110069I04Rik|2310068J10Rik|9530006G20Rik|AI848603|Myo	synaptopodin 2	protein-coding	12.367	17.403	5.398	12.551	5.955	2.902	10.971	8.334	8.612	11.827	10.637	6.048	11.083	14.280	12.162	12.855	9.917	12.849	7.955	6.012	2.924	10.309	6.105	4.164	15.125
2702	chr11	96515010	96524897	+	0	NA	intron (NM_001033186, intron 2 of 12)	L1Md_F2|LINE|L1	55362	NM_001177898	78473	Mm.395840	NM_001033186	ENSMUSG00000057058	Skap1	1700091G21Rik|Scap1|Skap-55	src family associated phosphoprotein 1	protein-coding	0.408	nan	0.379	0.428	0.212	0.097	0.306	0.268	0.389	0.195	0.324	0.377	0.124	0.233	0.270	0.491	nan	0.489	6.020	nan	2.320	7.877	5.671	nan	0.411
8902	chr2	158130841	158135945	+	0	NA	intron (NM_009373, intron 4 of 12)	intron (NM_009373, intron 4 of 12)	12999	NM_009373	21817	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	5.824	0.996	0.302	4.732	3.442	1.914	5.326	6.949	nan	5.030	2.406	1.226	nan	6.423	4.722	8.521	6.141	nan	nan	1.270	1.002	2.423	1.453	1.124	10.804
15734	chrX	68303343	68305525	+	0	NA	Intergenic	RCHARR1|DNA|hAT-Charlie	-294255	NR_030575	100124449		NR_030575	ENSMUSG00000106233	Mir509	Mirn509|mmu-mir-509	microRNA 509	ncRNA	1.932	1.496	0.179	2.999	0.729	0.456	1.059	1.920	1.612	1.932	0.235	0.180	0.885	1.421	2.447	2.357	0.979	1.836	0.929	0.656	0.827	1.914	1.126	0.905	3.522
13275	chr7	73481548	73488901	+	0	NA	intron (NM_001081345, intron 16 of 38)	MER20|DNA|hAT-Charlie	56522	NM_001081345	244059	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	6.248	2.252	1.430	nan	6.264	4.172	7.688	7.421	4.476	5.735	2.344	3.084	8.455	7.619	3.674	nan	4.193	4.737	2.004	2.634	1.828	1.203	3.262	2.242	nan
12277	chr6	58963269	58967274	+	0	NA	intron (NM_153574, intron 7 of 17)	intron (NM_153574, intron 7 of 17)	-58145	NM_021432	58243	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	6.147	0.812	1.115	3.762	2.218	1.179	5.699	4.476	5.854	5.864	1.156	2.483	9.468	7.529	8.179	11.850	9.770	7.453	3.838	3.085	1.973	2.406	4.531	2.784	6.912
11388	chr5	87765488	87766985	+	0	NA	Intergenic	Intergenic	-8214	NM_001304768	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	1.781	0.337	0.329	1.017	0.962	0.754	6.552	4.582	2.063	1.137	0.310	0.470	3.960	3.239	3.391	2.325	4.105	2.022	0.662	0.233	0.466	0.160	0.417	0.476	0.646
11982	chr5	149818072	149822005	+	0	NA	Intergenic	Intergenic	-8287	NR_077242	100861794	Mm.402054	NR_077242	ENSMUSG00000106740	Gm21221	-	predicted gene, 21221	ncRNA	4.696	2.262	1.570	nan	3.283	1.865	6.929	6.109	3.281	4.170	3.645	2.886	5.688	5.419	4.699	4.034	3.510	4.462	2.033	1.285	0.895	1.183	1.804	1.593	nan
3196	chr12	15855792	15860305	+	0	NA	Intergenic	Intergenic	-41263	NM_144551	217410	Mm.491136	NM_144551	ENSMUSG00000020601	Trib2	AW319517|TRB-2|TRB2	tribbles pseudokinase 2	protein-coding	5.194	0.996	0.408	2.250	2.448	1.414	3.662	3.614	4.126	4.999	1.808	1.398	4.105	5.236	5.189	7.380	6.446	5.291	1.875	2.172	1.083	2.952	2.044	0.964	8.081
13004	chr7	25687117	25693602	+	0	NA	intron (NM_011577, intron 1 of 6)	Lx5|LINE|L1	3357	NM_011577	21803	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	7.979	11.494	5.283	7.006	6.133	4.057	7.626	8.049	4.689	6.897	5.500	3.622	6.127	8.077	6.749	6.653	6.131	6.974	2.520	4.227	3.788	3.153	3.057	2.618	8.865
1895	chr11	3652383	3656172	+	0	NA	intron (NM_001159288, intron 2 of 26)	B2_Mm2|SINE|B2	-4423	NM_198162	74522	Mm.139127	NM_198162	ENSMUSG00000034543	Morc2a	8430403M08Rik|Zcwcc1	microrchidia 2A	protein-coding	nan	0.555	0.242	0.341	0.303	0.065	0.427	0.367	0.511	0.409	0.271	0.131	0.299	0.335	0.428	0.477	0.268	0.463	2.597	nan	1.138	4.950	1.567	0.893	0.653
5074	chr15	25742194	25745171	+	0	NA	intron (NM_019472, intron 18 of 40)	intron (NM_019472, intron 18 of 40)	-99616	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	1.689	6.950	5.495	1.061	0.813	0.649	1.182	1.119	1.039	0.947	0.997	0.264	1.486	1.507	0.957	1.173	1.855	1.602	0.895	1.133	1.161	0.823	1.717	1.041	0.796
7046	chr18	15264615	15268712	+	0	NA	Intergenic	B4A|SINE|B4	-115217	NM_134112	106931	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	5.595	0.869	0.461	2.890	2.057	2.265	4.852	5.563	5.132	4.915	1.489	1.111	8.375	5.865	4.525	5.823	6.107	5.738	0.482	0.313	0.252	0.423	0.307	0.321	7.505
12650	chr6	118985317	118988877	+	0	NA	intron (NM_001256002, intron 3 of 47)	PB1D10|SINE|Alu	106939	NR_046053	74363	Mm.399403	NR_046053		4931430N09Rik	-	RIKEN cDNA 4931430N09 gene	ncRNA	4.959	1.275	0.315	3.871	2.994	1.485	3.550	1.572	4.089	5.401	1.193	0.732	5.311	5.262	3.779	6.666	4.401	5.485	1.025	0.925	0.752	1.072	nan	0.660	4.979
5305	chr15	73390214	73392399	+	0	NA	intron (NM_001130409, intron 2 of 29)	intron (NM_001130409, intron 2 of 29)	31885	NM_007982	14083	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FAK|FRNK|Fadk|mKIAA4203|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	2.649	nan	0.674	3.359	0.998	0.536	4.097	5.137	1.299	1.749	nan	0.617	4.354	3.324	4.372	3.408	2.011	3.892	5.555	2.065	1.168	7.362	5.802	3.057	4.017
15099	chr9	56354011	56357844	+	0	NA	intron (NM_172924, intron 2 of 6)	intron (NM_172924, intron 2 of 6)	62123	NM_172924	244895	Mm.490331	NM_172924	ENSMUSG00000074305	Peak1	1110049L02Rik|9530046P14|AA690169|BE132841|C230081A13Rik|SGK269|mKIAA2002	pseudopodium-enriched atypical kinase 1	protein-coding	9.636	6.865	3.239	7.176	4.131	2.132	6.228	5.376	5.549	6.847	9.042	5.332	5.518	9.270	6.656	7.376	5.688	6.580	3.165	3.987	3.453	4.120	2.924	2.755	9.552
13129	chr7	35439528	35440657	+	0	NA	Intergenic	Intergenic	-9000	NM_001199015	30962	Mm.45874	NM_021291	ENSMUSG00000030492	Slc7a9	CSNU3	solute carrier family 7 (cationic amino acid transporter, y+ system), member 9	protein-coding	1.274	5.454	2.016	6.812	1.461	1.499	9.591	3.122	2.658	5.970	9.805	5.271	5.918	3.651	7.411	7.068	1.944	2.616	7.161	1.762	5.419	6.259	4.079	8.070	3.295
9213	chr3	30396311	30414367	+	0	NA	intron (NM_021442, intron 1 of 2)	intron (NM_021442, intron 1 of 2)	104148	NM_021442	14013	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	6.534	0.592	0.353	6.383	5.775	3.458	nan	1.416	8.059	11.821	5.050	5.473	9.261	6.981	nan	7.569	7.545	nan	0.745	0.944	0.828	0.619	0.736	0.576	8.007
4465	chr14	9207828	9213184	+	0	NA	Intergenic	Lx9|LINE|L1	544116	NR_045968	74859	Mm.84041	NR_045968	ENSMUSG00000097898	4930455B14Rik	1700027C12Rik	RIKEN cDNA 4930455B14 gene	ncRNA	2.079	0.806	0.258	0.686	0.260	0.093	1.281	4.725	2.388	1.064	6.580	5.775	1.322	0.603	1.370	1.874	1.221	1.883	2.077	1.103	0.526	1.682	1.639	0.847	2.245
9892	chr3	157736520	157739721	+	0	NA	Intergenic	Intergenic	171228	NM_011196	19218	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	3.294	0.827	1.134	2.245	2.509	1.669	2.732	1.531	3.983	4.565	0.724	0.604	4.114	5.921	2.986	1.972	4.537	3.079	0.564	0.577	0.682	0.433	0.417	0.570	1.988
3799	chr12	118895501	118904925	+	0	NA	intron (NM_029961, intron 20 of 27)	intron (NM_029961, intron 20 of 27)	53884	NM_177082	320145	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	nan	1.482	0.938	5.730	2.576	1.055	2.594	2.047	3.630	3.441	4.026	1.288	2.115	2.810	2.836	nan	2.738	5.163	1.098	1.213	0.693	0.957	0.685	0.494	2.694
4283	chr13	93238203	93239057	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-46347	NM_133905	100715	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	2.358	0.665	0.423	1.942	2.371	0.571	3.844	4.139	3.114	2.545	0.546	1.536	4.121	3.453	4.975	5.194	3.397	4.481	3.066	1.216	0.857	4.373	0.757	0.916	4.194
4399	chr13	110270957	110273241	+	0	NA	intron (NM_023852, intron 1 of 4)	intron (NM_023852, intron 1 of 4)	8107	NM_023852	67295	Mm.151600	NM_023852	ENSMUSG00000021700	Rab3c	2700062I01Rik|3110015B08Rik|3110037E15Rik|AI850886	RAB3C, member RAS oncogene family	protein-coding	3.433	nan	0.507	3.450	5.134	3.245	2.562	3.731	nan	3.986	3.444	2.759	3.809	3.830	3.985	4.739	1.836	4.660	1.065	1.012	0.942	nan	1.395	0.898	2.032
2048	chr11	30058049	30060912	+	0	NA	Intergenic	MT2B2|LTR|ERVL	-33447	NM_146016	237711	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding	2.116	1.373	0.440	4.767	1.811	0.764	0.846	0.852	1.662	1.843	1.068	0.643	0.598	1.525	1.303	1.826	nan	2.754	1.311	0.816	0.334	2.466	0.580	0.382	1.379
11134	chr5	32684804	32689093	+	0	NA	3' UTR (NM_009535, exon 12 of 12)	3' UTR (NM_009535, exon 12 of 12)	59394	NM_001347332	320951	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0.513	0.439	0.456	nan	0.368	0.185	0.433	0.411	0.414	0.426	0.511	0.383	0.180	0.267	0.362	0.410	0.320	0.430	3.593	3.348	1.725	4.756	3.494	2.288	0.402
9632	chr3	104021799	104025846	+	0	NA	intron (NM_001159354, intron 16 of 20)	L1MB7|LINE|L1	-55506	NR_030676	100125931	Mm.400392	NR_030676	ENSMUSG00000089998	Phtf1os	A130049A11Rik	putative homeodomain transcription factor 1, opposite strand	ncRNA	7.328	4.270	1.441	8.607	4.834	4.301	10.051	6.967	6.144	10.973	5.323	2.884	10.592	10.500	9.211	9.158	7.096	10.983	4.396	1.851	2.072	5.120	2.932	4.596	12.616
655	chr1	136126423	136136818	+	0	NA	promoter-TSS (NR_046169)	promoter-TSS (NR_046169)	219	NM_001039472	16565	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	4.286	0.943	0.458	nan	1.013	0.415	6.423	5.011	1.427	2.238	0.258	0.745	3.280	5.181	4.995	nan	3.763	3.587	0.963	0.584	0.367	1.518	0.509	0.318	nan
421	chr1	90595378	90599358	+	0	NA	Intergenic	RMER4A|LTR|ERVK	-6057	NM_133805	108679	Mm.119177	NM_133805	ENSMUSG00000034432	Cops8	9430009J09Rik|AA408242|Csn8|Sgn8	COP9 signalosome subunit 8	protein-coding	10.866	8.943	1.913	11.276	3.548	2.341	8.328	4.289	7.813	15.024	12.382	6.631	10.546	7.631	8.546	14.858	7.189	12.925	5.923	3.066	2.339	8.473	5.034	4.348	14.341
5717	chr15	101979879	101982479	+	0	NA	Intergenic	Intergenic	23163	NM_031170	16691	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	7.070	5.831	1.955	4.447	5.268	3.822	10.437	13.100	3.844	4.816	4.830	2.150	11.333	8.932	8.629	7.498	5.958	5.354	1.448	1.144	1.490	1.343	1.881	1.401	5.001
8033	chr2	26336035	26360945	+	0	NA	TTS (NM_001199147)	TTS (NM_001199147)	3620	NM_026828	52838	Mm.31239	NM_026828	ENSMUSG00000075467	Dnlz	1110034G11Rik|D2Bwg1335e|HEP1	DNL-type zinc finger	protein-coding	6.529	4.361	0.939	7.914	2.666	1.266	5.181	6.348	nan	5.285	3.697	1.848	5.734	6.230	6.447	9.343	5.563	7.586	1.051	0.935	0.788	1.574	0.681	0.491	11.711
10687	chr4	134477186	134481953	+	0	NA	Intergenic	Intergenic	11249	NM_019641	16765	Mm.378957	NM_019641	ENSMUSG00000028832	Stmn1	19k|Lag|Lap18|Op18|P18|P19|Pig|Pp17|Pp18|Pp19|Pr22|Smn	stathmin 1	protein-coding	8.598	11.940	4.571	11.950	5.760	4.943	6.636	7.352	nan	9.658	6.427	3.740	7.256	9.162	8.145	9.628	5.358	8.312	7.266	4.118	4.012	7.661	5.795	6.369	11.477
271	chr1	69486591	69493592	+	0	NA	Intergenic	RMER15|LTR|ERVL	195869	NM_011770	22779	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0.900	0.631	0.481	0.297	0.231	0.106	1.036	3.492	1.321	0.731	6.786	5.226	1.439	nan	1.285	nan	nan	nan	0.544	0.459	0.403	0.441	0.332	0.313	0.310
13083	chr7	30241810	30248341	+	0	NA	intron (NM_146186, intron 22 of 32)	B1_Mus1|SINE|Alu	-8310	NM_001289817	381867	Mm.483986	NM_001289817	ENSMUSG00000100512	Ovol3	Gm1903|movo3	ovo like zinc finger 3	protein-coding	3.754	0.894	0.340	3.917	2.498	1.039	5.406	6.788	4.403	5.437	3.407	2.432	5.033	6.562	5.763	5.365	3.011	6.357	1.756	1.436	1.093	3.113	1.450	0.850	6.174
8240	chr2	50992306	50997566	+	0	NA	Intergenic	RLTR45-int|LTR|ERVK	85252	NR_033595	227885	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	OTTMUSG00000012426	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	2.678	0.970	0.841	1.116	0.613	0.328	4.467	5.438	1.472	nan	2.661	2.553	1.730	1.253	2.141	2.344	2.407	1.819	0.440	0.391	0.280	0.235	0.120	0.072	1.118
3742	chr12	112802424	112804205	+	0	NA	Intergenic	Intergenic	-5661	NM_145450	217887	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Flj20080	cDNA sequence BC022687	protein-coding	3.929	0.635	0.682	1.429	2.295	2.064	4.133	1.616	nan	1.605	2.415	1.134	3.944	5.357	1.804	2.211	3.552	2.474	0.622	0.581	1.266	0.386	0.536	0.817	nan
11407	chr5	90310832	90312286	+	0	NA	intron (NM_198010, intron 1 of 32)	ID_B1|SINE|B4	54626	NM_030886	81702	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	1.653	1.538	0.553	2.497	0.938	0.484	1.483	1.420	1.619	2.349	0.447	0.313	0.899	2.828	3.759	1.779	2.496	1.596	0.523	0.271	0.485	0.308	0.299	0.250	3.817
3174	chr12	8834253	8836953	+	0	NA	Intergenic	Intergenic	64207	NM_011519	20969	Mm.2580	NM_011519	ENSMUSG00000020592	Sdc1	AA408134|AA409076|CD138|Sstn|Synd|Synd1|syn-1	syndecan 1	protein-coding	2.428	2.377	0.776	2.004	2.369	1.515	2.803	2.158	3.014	5.022	5.527	2.522	3.180	5.650	2.235	2.833	2.182	2.172	0.480	0.763	0.362	0.512	0.702	0.276	2.609
4822	chr14	70914512	70941361	+	0	NA	intron (NM_001302094, intron 3 of 7)	intron (NM_001302094, intron 3 of 7)	37829	NM_001302094	14586	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	4.342	0.978	0.436	4.017	2.710	1.589	4.666	5.163	4.110	7.607	1.285	0.923	3.503	5.902	5.830	7.323	3.419	7.063	2.241	nan	1.748	2.940	1.389	1.229	10.555
7736	chr19	36866655	36872357	+	0	NA	intron (NM_001163635, intron 13 of 26)	intron (NM_001163635, intron 13 of 26)	35274	NM_001163635	74493	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	5.790	0.554	0.308	2.543	1.787	1.363	5.299	6.982	2.814	3.870	0.692	0.894	5.155	4.785	5.341	8.034	10.086	5.594	0.263	0.685	0.494	0.591	0.561	0.304	7.185
13356	chr7	87040710	87041711	+	0	NA	Intergenic	L1Md_F2|LINE|L1	44745	NM_001105190	621430	Mm.469903	NM_001105190	ENSMUSG00000090362	Vmn2r79	EG621430	vomeronasal 2, receptor 79	protein-coding	2.133	0.920	0.725	1.694	2.036	0.529	2.498	1.740	nan	2.736	1.191	0.966	1.907	4.380	1.779	3.462	3.589	2.251	0.978	1.309	0.246	1.509	1.049	0.672	2.389
491	chr1	107820940	107823315	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	-95132	NR_102306	319596	Mm.136054	NR_102306	ENSMUSG00000100457	D830032E09Rik	-	RIKEN cDNA D830032E09 gene	ncRNA	9.795	2.042	0.817	4.220	2.852	1.301	7.504	4.620	5.293	4.444	2.837	2.426	9.453	5.887	8.093	10.655	6.785	6.179	1.053	1.079	0.358	0.845	0.882	0.486	5.398
9382	chr3	75302672	75304064	+	0	NA	Intergenic	Intergenic	-33290	NM_026460	67931	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	2.999	3.390	2.327	2.055	2.691	0.962	4.252	2.239	2.524	1.878	4.182	2.903	2.714	4.047	3.304	1.784	1.728	2.244	1.756	2.005	1.468	0.881	2.081	1.232	1.285
9302	chr3	52149931	52153328	+	0	NA	Intergenic	B1_Mur2|SINE|Alu	-46623	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding	3.027	1.272	0.683	2.232	1.421	0.333	4.038	2.863	2.910	2.576	0.894	1.279	5.683	4.421	4.239	4.613	3.744	3.386	1.338	0.977	0.361	1.147	0.581	0.629	3.550
14645	chr8	119801846	119809109	+	0	NA	Intergenic	Intergenic	-27061	NM_028883	74347	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	5.230	4.909	2.204	3.647	3.523	2.080	3.888	6.917	2.945	3.464	4.063	3.371	4.680	4.423	4.843	5.807	3.734	4.193	3.129	1.897	2.167	4.643	2.259	1.673	5.334
1863	chr10	127870459	127877523	+	0	NA	intron (NM_145424, intron 1 of 3)	RLTR48A|LTR|ERV1	7515	NM_145424	216454	Mm.214923	NM_145424	ENSMUSG00000074639	BC089597	CRAD-L	cDNA sequence BC089597	protein-coding	3.117	14.917	6.498	2.300	1.765	0.949	1.688	2.775	1.729	2.371	1.289	0.989	1.797	3.306	2.467	2.946	2.191	2.378	1.203	1.229	1.221	1.874	nan	1.256	3.071
9227	chr3	35046575	35049752	+	0	NA	Intergenic	Intergenic	-125512	NR_105799	102466155		NR_105799	ENSMUSG00000098862	Mir6378	Gm27706|mmu-mir-6378	microRNA 6378	ncRNA	3.716	0.510	0.385	1.635	0.899	0.245	3.620	2.355	nan	2.582	0.589	1.127	4.848	3.859	3.434	2.839	3.682	3.519	nan	1.277	0.386	nan	1.008	0.772	5.702
4495	chr14	20804750	20806443	+	0	NA	Intergenic	Intergenic	-11508	NM_178597	12325	Mm.235182	NM_178597	ENSMUSG00000021820	Camk2g	Camkg	calcium/calmodulin-dependent protein kinase II gamma	protein-coding	8.815	13.583	10.876	6.843	2.929	1.692	3.440	2.097	3.146	5.135	3.734	1.968	1.391	4.225	2.770	2.723	3.313	3.301	4.967	6.721	5.413	nan	4.821	4.117	3.913
15658	chrX	7256520	7258752	+	0	NA	intron (NM_001243762, intron 2 of 13)	Lx5c|LINE|L1	-9139	NR_030242	751544		NR_030242	ENSMUSG00000070139	Mir532	Mirn532|mir-532|mmu-mir-532	microRNA 532	ncRNA	4.699	1.346	0.610	3.693	2.920	1.937	3.179	3.834	2.777	4.065	1.904	1.298	3.495	5.559	3.557	4.465	3.093	3.715	2.018	1.720	0.781	1.649	1.780	1.469	5.049
4672	chr14	54873133	54875144	+	0	NA	Intergenic	Intergenic	3400	NM_001167908	105651	Mm.297365	NM_001167908	ENSMUSG00000072494	Ppp1r3e	A630071A11Rik|AW049239|Gm1211	protein phosphatase 1, regulatory (inhibitor) subunit 3E	protein-coding	6.051	5.986	1.590	5.172	2.673	0.506	5.006	8.615	4.300	4.433	4.276	2.271	5.951	7.529	7.171	8.262	3.706	5.571	2.681	1.281	0.838	2.560	1.511	0.478	7.130
5852	chr16	18777037	18779729	+	0	NA	TTS (NM_013805)	TTS (NM_013805)	1536	NM_013805	12741	Mm.22768	NM_013805	ENSMUSG00000041378	Cldn5	AI854493|MBEC1|Tmvcf	claudin 5	protein-coding	3.172	1.320	0.366	9.002	0.795	0.402	1.786	1.254	2.258	3.764	1.269	0.455	1.437	1.942	2.861	4.084	1.204	6.234	0.777	0.734	0.659	1.593	0.277	0.425	5.373
4098	chr13	48587664	48589199	+	0	NA	intron (NM_001301781, intron 7 of 10)	intron (NM_001301781, intron 7 of 10)	37241	NM_207232	218232	Mm.315089	NM_207232	ENSMUSG00000038042	Ptpdc1	AI843923|AW456874|Naa-1|Ptpcd1	protein tyrosine phosphatase domain containing 1	protein-coding	1.999	0.534	0.192	1.559	2.164	0.982	2.023	0.450	1.522	1.289	1.650	1.230	0.606	3.201	1.815	1.841	0.554	3.131	1.047	nan	0.433	1.045	0.881	0.232	2.217
840	chr1	167414341	167415586	+	0	NA	Intergenic	Intergenic	-21166	NM_025569	66447	Mm.218286	NM_025569	ENSMUSG00000026688	Mgst3	2010012L10Rik|2010306B17Rik|2700004G04Rik|AA516734|GST-III	microsomal glutathione S-transferase 3	protein-coding	3.397	1.053	0.732	1.367	0.665	0.244	2.276	5.746	2.372	1.528	0.804	0.493	2.937	3.129	3.419	7.778	4.579	1.939	1.908	0.580	0.394	3.629	nan	0.352	2.812
13933	chr7	151141378	151144684	+	0	NA	Intergenic	Intergenic	5828196	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	2.540	nan	0.550	nan	0.239	0.441	3.262	5.924	nan	1.175	3.273	0.591	3.333	2.761	3.321	3.659	3.534	1.909	1.333	0.667	0.519	1.942	nan	0.318	3.188
4693	chr14	56194100	56199001	+	0	NA	Intergenic	L1Md_T|LINE|L1	14857	NM_010374	14943	Mm.457976	NM_010374	ENSMUSG00000015441	Gzmf	CCP4|Ctla-7|Ctla7|MCSP-3	granzyme F	protein-coding	6.968	6.643	3.656	7.070	5.019	3.768	9.061	8.745	4.494	7.855	4.054	1.937	6.411	10.423	7.908	7.705	5.645	5.865	5.711	2.799	3.227	3.646	7.407	6.782	11.478
14577	chr8	109359714	109361376	+	0	NA	Intergenic	Intergenic	-19637	NR_002928	384864	Mm.390083	NR_002928		Gm1943	-	WD repeat domain 70 pseudogene	pseudo	6.107	0.951	0.325	2.143	1.314	1.354	2.617	5.499	2.596	2.497	5.889	3.832	6.014	3.837	3.793	5.709	4.713	3.483	2.899	1.864	1.296	nan	1.940	1.966	7.360
14092	chr8	26228165	26231150	+	0	NA	Intergenic	Intergenic	71488	NM_199042	73754	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	0.799	9.854	6.201	1.263	0.720	0.727	0.597	0.927	0.769	1.038	0.401	0.681	0.496	0.539	0.970	1.015	1.176	0.951	0.681	1.349	1.340	nan	0.424	0.439	0.833
10653	chr4	133306235	133314144	+	0	NA	intron (NM_199306, intron 5 of 15)	intron (NM_199306, intron 5 of 15)	29126	NM_199306	230796	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	9.621	15.760	4.956	11.857	6.048	4.722	9.028	8.153	nan	14.753	7.359	3.781	7.518	10.320	9.900	10.805	5.563	9.852	8.808	3.681	4.613	10.432	7.064	9.293	17.271
4541	chr14	25597366	25601720	+	0	NA	intron (NM_001310666, intron 6 of 23)	L2a|LINE|L2	-3970	NM_001309430	100188919	Mm.473810	NM_001309430		Israa	-	immune system released activating agent	protein-coding	1.932	3.010	1.432	1.632	0.766	0.253	1.114	3.189	0.831	1.108	1.179	0.667	1.412	1.358	1.837	nan	nan	nan	6.107	2.612	1.892	7.097	4.410	3.363	3.057
14229	chr8	48797713	48800271	+	0	NA	Intergenic	Intergenic	-124302	NM_011857	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding	9.015	10.881	2.975	11.738	4.241	3.234	6.002	9.260	6.292	10.087	6.565	3.997	7.777	7.966	8.489	11.262	8.069	9.108	5.209	4.411	4.462	8.069	3.499	3.470	15.540
12177	chr6	38821146	38827245	+	0	NA	intron (NM_001294144, intron 1 of 14)	intron (NM_001294144, intron 1 of 14)	13116	NM_001136065	15258	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	7.209	5.686	2.151	7.676	4.669	3.034	7.768	5.809	4.880	9.712	3.450	2.497	7.242	9.973	6.525	8.920	5.997	8.548	nan	2.643	2.198	4.739	nan	3.154	8.663
1411	chr10	69557459	69561041	+	0	NA	intron (NM_170730, intron 1 of 17)	intron (NM_170730, intron 1 of 17)	25542	NM_146005	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	11.135	15.073	5.386	9.633	5.366	3.648	8.127	6.509	5.832	13.392	9.317	3.603	7.304	10.503	8.032	9.701	7.786	8.336	3.567	2.578	3.396	4.412	3.144	4.193	16.339
1480	chr10	79477235	79482894	+	0	NA	intron (NM_001104537, intron 3 of 5)	intron (NM_001104537, intron 3 of 5)	11106	NM_001104537	625029	Mm.469865	NM_001104537	ENSMUSG00000091381	Vmn2r83	EG625029	vomeronasal 2, receptor 83	protein-coding	7.730	12.842	4.992	8.236	4.211	2.696	6.680	7.268	5.219	8.367	3.780	2.355	7.435	10.465	6.922	6.760	3.822	8.291	nan	1.681	1.841	1.108	0.810	0.781	10.983
5785	chr16	10554172	10555613	+	0	NA	intron (NM_001204229, intron 1 of 22)	Lx9|LINE|L1	9553	NM_001204229	74374	Mm.159176	NM_177562	ENSMUSG00000068663	Clec16a	4932416N17Rik|curt|mKIAA0350	C-type lectin domain family 16, member A	protein-coding	1.294	1.540	0.656	1.307	1.524	0.603	nan	1.085	1.224	1.198	1.633	0.943	1.300	3.602	1.309	2.791	1.930	2.179	1.315	0.278	0.340	1.069	0.753	0.510	1.987
4793	chr14	67432014	67447362	+	0	NA	Intergenic	Intergenic	-41946	NR_045961	73977	Mm.414915	NR_045961	ENSMUSG00000093472	4930438E09Rik	-	RIKEN cDNA 4930438E09 gene	ncRNA	5.500	1.219	0.425	4.447	3.064	1.464	5.567	3.308	4.204	4.897	0.967	0.652	6.106	8.923	6.029	7.014	3.130	6.562	1.089	nan	0.675	2.504	0.643	0.358	8.034
6962	chr17	88979483	88983405	+	0	NA	Intergenic	MER33|DNA|hAT-Charlie	-189468	NM_013582	16867	Mm.1644	NM_013582	ENSMUSG00000024107	Lhcgr	Gpcr19-rs1|LH-R|Lhr	luteinizing hormone/choriogonadotropin receptor	protein-coding	6.267	16.866	7.408	6.849	4.167	1.702	5.862	6.269	4.494	6.039	1.296	0.907	4.415	7.280	6.152	6.201	3.577	6.080	1.677	1.627	0.826	1.281	1.672	0.565	6.686
3581	chr12	86970832	86972631	+	0	NA	Intergenic	B1_Mur3|SINE|Alu	16945	NM_001080943	238331	Mm.185890	NM_001080943	ENSMUSG00000048483	Zdhhc22	Gm262	zinc finger, DHHC-type containing 22	protein-coding	2.333	2.029	0.668	3.076	0.642	0.405	2.558	1.610	1.853	2.562	0.705	1.720	2.335	2.779	2.806	3.488	2.011	3.728	1.365	1.240	0.635	1.591	1.115	0.874	5.366
3265	chr12	32276031	32279129	+	0	NA	Intergenic	Intergenic	-68931	NM_001146200	30955	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphoinositide-3-kinase, catalytic, gamma polypeptide	protein-coding	9.980	0.618	0.206	2.279	2.572	2.295	3.890	1.887	3.568	3.557	0.915	0.571	6.245	3.156	3.185	4.655	6.895	6.165	0.824	0.796	0.970	0.618	0.433	0.536	9.094
14525	chr8	107916495	107918648	+	0	NA	Intergenic	B4|SINE|B4	-329089	NM_010817	17463	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	3.076	3.268	1.204	8.315	3.334	2.323	1.368	8.721	5.601	9.735	4.305	3.452	2.599	6.261	4.215	5.042	2.191	5.292	0.508	0.346	0.378	nan	0.514	0.273	3.577
14165	chr8	37722674	37725763	+	0	NA	intron (NM_145841, intron 2 of 7)	intron (NM_145841, intron 2 of 7)	527984	NR_029884	723860		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA	2.711	0.672	0.605	3.228	2.048	1.444	1.981	2.182	2.937	2.770	1.941	0.795	3.306	2.651	3.313	4.591	2.048	3.622	0.588	0.252	0.559	0.874	0.338	0.118	nan
15430	chr9	101152940	101155898	+	0	NA	intron (NM_001161362, intron 6 of 13)	intron (NM_001161362, intron 6 of 13)	44654	NM_172144	235542	Mm.335386	NM_172144	ENSMUSG00000043154	Ppp2r3a	3222402P14Rik|A730042E07	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding	3.602	2.602	0.992	4.449	1.130	0.398	2.766	5.882	3.564	6.485	4.679	4.812	2.931	3.833	3.907	5.062	2.542	4.807	1.126	0.787	1.028	2.924	0.627	1.064	6.763
1588	chr10	90649214	90653141	+	0	NA	intron (NM_001177396, intron 2 of 11)	ORR1B2-int|LTR|ERVL-MaLR	74486	NM_181398	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	3.281	9.224	6.536	2.279	3.315	2.228	1.825	2.228	2.514	2.238	3.183	2.002	1.433	nan	2.294	2.413	2.759	nan	3.662	5.215	3.654	nan	nan	5.131	2.417
7092	chr18	25910054	25914981	+	0	NA	Intergenic	Intergenic	-158534	NM_001174074	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	2.480	0.383	0.221	0.723	0.560	0.479	5.945	5.160	0.800	1.611	0.311	1.013	3.139	1.900	2.301	nan	3.753	1.593	nan	5.891	4.435	nan	8.914	7.725	3.613
9313	chr3	53255399	53260975	+	0	NA	intron (NM_175386, intron 3 of 3)	intron (NM_175386, intron 3 of 3)	205071	NM_172501	212114	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	4.437	0.840	0.351	nan	2.214	1.364	7.502	5.570	2.604	2.249	2.590	0.505	8.439	6.119	6.262	6.163	4.761	4.731	0.367	0.389	0.374	0.418	0.292	0.136	7.379
4138	chr13	52913185	52921056	+	0	NA	intron (NM_016709, intron 3 of 9)	intron (NM_016709, intron 3 of 9)	12557	NM_016709	11992	Mm.252034	NM_016709	ENSMUSG00000021460	Auh	C77140|W91705	AU RNA binding protein/enoyl-coenzyme A hydratase	protein-coding	8.215	3.283	1.548	5.326	5.545	4.259	6.571	7.747	6.541	8.921	4.366	3.300	8.025	10.348	8.429	8.552	6.213	6.648	1.401	nan	1.536	2.364	1.679	1.628	8.166
5744	chr16	4272881	4277622	+	0	NA	Intergenic	ID_B1|SINE|B4	46022	NR_003628	436332	Mm.478141	NM_001013830	ENSMUSG00000089645	Gm5766	EG436332	ribosomal protein L7a pseudogene	pseudo	2.907	0.821	0.546	1.813	3.176	2.532	1.827	2.762	2.172	2.382	2.617	1.260	1.926	3.735	2.043	1.924	1.721	2.213	0.772	0.957	1.062	0.898	0.580	0.714	2.027
6213	chr16	92548003	92554104	+	0	NA	Intergenic	Intergenic	52906	NM_172469	209195	Mm.44747	NM_172469	ENSMUSG00000022949	Clic6	5730466J16Rik|AL022908|AW045520|CLIC1L	chloride intracellular channel 6	protein-coding	3.313	nan	0.318	1.035	0.916	0.472	2.928	5.755	1.584	2.153	4.074	1.289	3.235	3.663	2.718	2.902	1.293	2.568	0.832	0.403	0.295	nan	0.374	0.252	2.472
10554	chr4	128693259	128694830	+	0	NA	intron (NM_018774, intron 1 of 14)	intron (NM_018774, intron 1 of 14)	5306	NM_018774	54383	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic-like 2 (Drosophila)	protein-coding	3.009	5.470	2.550	3.887	6.520	3.895	2.470	1.472	2.269	3.598	1.022	1.060	1.563	4.296	3.653	2.418	1.658	3.472	0.607	0.933	1.233	1.948	0.881	0.549	5.129
12737	chr6	128477326	128478926	+	0	NA	intron (NR_028593, intron 2 of 4)	intron (NR_028593, intron 2 of 4)	39369	NR_028592	791299	Mm.297516	NR_028592	ENSMUSG00000059659	Gm10069	ENSMUSG00000059659	predicted gene 10069	ncRNA	4.549	nan	0.681	1.283	2.790	3.123	3.703	8.248	2.776	2.911	0.767	0.935	3.200	4.331	3.384	5.680	6.306	3.086	1.368	1.513	1.591	0.828	0.879	1.447	3.358
9643	chr3	104509807	104511026	+	0	NA	intron (NM_001310698, intron 1 of 17)	intron (NM_001310698, intron 1 of 17)	1502	NM_001310698	269473	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	3.152	0.589	0.207	1.580	3.704	3.808	9.019	3.940	2.490	2.050	1.398	2.315	3.453	4.434	2.593	2.547	2.550	3.468	1.619	1.243	2.047	1.424	1.480	1.806	2.295
1795	chr10	120330511	120336508	+	0	NA	Intergenic	Lx9|LINE|L1	-56014	NR_040626	320626	Mm.446091	NR_040626	ENSMUSG00000090191	9230105E05Rik	-	RIKEN cDNA 9230105E05 gene	ncRNA	6.600	1.909	0.494	5.447	4.525	2.502	3.673	3.111	4.259	9.697	1.124	0.860	4.035	5.064	5.346	5.899	3.870	nan	0.758	0.622	0.588	0.680	0.508	0.578	7.507
7387	chr18	74927271	74928290	+	0	NA	Intergenic	Intergenic	33483	NM_010720	16891	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	3.590	nan	0.117	1.541	0.398		4.321	6.773	2.367	2.456	0.559	0.722	6.789	3.370	4.249	4.560	1.700	2.975	2.466	nan	0.404	3.089	1.289	0.410	3.499
6869	chr17	79391245	79392272	+	0	NA	Intergenic	L1MC1|LINE|L1	-36667	NM_026514	260409	Mm.140601	NM_026514	ENSMUSG00000036533	Cdc42ep3	3200001F04Rik|AA986861|Borg2|Cep3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding	4.159	0.599	0.520	3.730	1.717	0.409	7.231	3.700	nan	2.132	0.384	1.091	4.256	3.759	5.345	7.193	4.765	4.238	0.638	0.559	0.316	0.428	0.152	0.243	7.170
11337	chr5	73055168	73057310	+	0	NA	intron (NM_028194, intron 49 of 62)	B3|SINE|B2	49335	NM_173403	231290	Mm.491387	NM_173403	ENSMUSG00000029219	Slc10a4	E130304D01	solute carrier family 10 (sodium/bile acid cotransporter family), member 4	protein-coding	3.064	0.565	0.528	2.000	1.981	2.121	4.396	3.660	3.322	3.661	0.515	0.625	4.077	5.750	3.973	4.766	4.032	4.094	0.639	0.482	0.572	0.543	0.697	0.484	3.024
11266	chr5	64769080	64773768	+	0	NA	Intergenic	MER47B|DNA|TcMar-Tigger	-32099	NM_008453	16599	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	6.439	3.567	1.418	5.700	4.495	2.515	4.649	4.339	3.618	3.865	4.357	2.931	2.980	4.734	4.387	4.910	4.193	4.268	1.608	1.361	0.986	nan	1.361	1.570	4.224
9950	chr4	15183647	15186551	+	0	NA	Intergenic	RLTR9A3|LTR|ERVK	-35968	NM_178617	69352	Mm.389031	NM_178617	ENSMUSG00000040536	Necab1	1700003H21Rik|Efcbp1|STIP-1	N-terminal EF-hand calcium binding protein 1	protein-coding	3.254	0.527	0.357	1.048	1.074	0.638	4.022	2.341	1.880	2.272	0.921	0.453	2.455	2.619	4.061	4.428	2.676	2.506	1.031	0.732	0.380	0.493	0.569	0.443	1.769
14917	chr9	22115982	22119864	+	0	NA	intron (NR_030448, intron 3 of 4)	B4A|SINE|B4	-3754	NM_170777	66126	Mm.29801	NM_170777	ENSMUSG00000013822	Elof1	1110011K10Rik	ELF1 homolog, elongation factor 1	protein-coding	5.222	1.755	1.454	2.384	0.933	0.811	1.165	1.395	2.289	3.054	3.582	1.505	3.160	2.837	2.058	2.475	1.745	2.613	0.779	0.460	0.458	0.470	0.419	0.453	4.663
14556	chr8	108709264	108712038	+	0	NA	Intergenic	Intergenic	-3993	NM_007496	11906	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	3.062	1.425	0.692	2.035	2.249	0.919	3.487	5.272	1.821	1.794	3.773	2.105	4.210	6.213	3.426	3.755	4.808	2.933	0.693	2.092	0.827	nan	0.568	0.703	3.030
15495	chr9	107954991	107958745	+	0	NA	intron (NM_011634, intron 3 of 14)	intron (NM_011634, intron 3 of 14)	5905	NM_011634	22036	Mm.297870	NM_011634	ENSMUSG00000032586	Traip	Trip	TRAF-interacting protein	protein-coding	2.980	2.201	0.592	3.150	0.642	0.310	4.098	4.618	nan	2.911	1.135	0.805	5.185	4.472	7.027	9.356	2.378	5.348	0.641	0.350	0.522	1.545	0.295	0.115	9.066
12868	chr6	146926621	146930640	+	0	NA	intron (NM_026221, intron 1 of 26)	intron (NM_026221, intron 1 of 26)	25791	NM_001164236	73344	Mm.391543	NM_028509	ENSMUSG00000040163	1700034J05Rik	-	RIKEN cDNA 1700034J05 gene	protein-coding	4.178	0.925	0.625	nan	2.028	0.686	5.351	4.386	2.702	3.156	1.995	0.501	nan	5.823	4.814	8.014	4.256	4.672	0.663	nan	0.437	nan	0.545	0.352	4.625
5662	chr15	100050004	100052905	+	0	NA	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	12790	NM_001159361	239667	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	7.714	0.961	0.923	3.711	5.862	3.788	5.806	10.599	4.000	5.208	9.508	2.540	8.706	10.418	6.397	5.607	5.408	7.492	0.705	1.293	0.845	1.125	0.436	0.528	7.176
3273	chr12	33866407	33869184	+	0	NA	Intergenic	BGLII_Mur|LTR|ERVK	-60630	NM_033522	114712	Mm.204643	NM_033522	ENSMUSG00000046518	Ferd3l	Mnato3|N-twist|Nato|Nato3|Ntwist|Ptfb|bHLHa31|fer3	Fer3-like (Drosophila)	protein-coding	6.095	8.154	2.337	4.337	3.626	1.929	3.579	3.319	nan	5.064	1.234	1.392	4.934	6.400	5.999	7.983	3.691	6.650	nan	0.433	0.266	1.163	0.550	0.334	9.709
12269	chr6	56872737	56875020	+	0	NA	intron (NM_012056, intron 8 of 9)	intron (NM_012056, intron 8 of 9)	28008	NM_001252374	107569	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	7.111	6.888	2.349	5.535	2.481	0.913	6.427	6.835	3.699	5.834	4.139	2.548	5.982	7.888	7.754	9.277	5.443	6.160	5.369	3.266	1.604	4.604	3.570	2.045	7.932
7277	chr18	60367494	60375129	+	0	NA	Intergenic	L1_Mus2|LINE|L1	-4718	NM_021792	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	7.762	nan	1.057	nan	2.828	1.535	3.365	nan	4.370	4.257	0.805	1.498	nan	3.247	2.622	2.651	2.964	nan	nan	0.604	0.533	nan	0.403	0.334	nan
10706	chr4	135385863	135390512	+	0	NA	intron (NM_145555, intron 1 of 4)	intron (NM_145555, intron 1 of 4)	-2515	NM_001243305	230822	Mm.35548	NM_145555	ENSMUSG00000043924	Ncmap	A330049M08Rik|AA545175|Mp11	noncompact myelin associated protein	protein-coding	nan	0.888	0.585	4.097	1.497	0.956	0.683	1.145	nan	2.140	2.287	1.175	1.166	1.951	1.623	1.455	0.764	1.892	4.687	2.553	2.050	5.449	nan	1.963	1.068
11070	chr5	23950222	23951906	+	0	NA	intron (NM_001310471, intron 10 of 10)	MYSERV16_I-int|LTR|ERVK	79248	NM_001310471	84652	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	8.374	11.934	4.516	11.872	4.436	2.565	9.087	7.876	4.929	11.445	6.827	3.414	6.297	9.634	10.799	11.385	5.506	8.604	5.026	2.769	2.724	6.167	2.956	3.799	14.895
1689	chr10	98921475	98925169	+	0	NA	intron (NM_026482, intron 1 of 20)	intron (NM_026482, intron 1 of 20)	8170	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	10.020	5.349	2.385	5.543	5.102	2.541	6.871	6.115	5.222	5.878	5.126	3.604	5.264	8.017	6.258	7.450	7.236	6.047	nan	3.626	2.448	nan	3.393	2.560	7.376
7713	chr19	33030695	33031850	+	0	NA	Intergenic	Intergenic	273695	NM_008960	19211	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|TEP1	phosphatase and tensin homolog	protein-coding	5.210	3.654	3.000	3.389	1.356	1.342	3.334	3.737	1.569	2.167	2.438	1.710	1.579	3.722	2.285	2.747	2.542	2.633	nan	1.762	1.518	0.855	nan	1.113	3.376
10962	chr4	151573923	151582145	+	0	NA	intron (NM_001081557, intron 4 of 23)	intron (NM_001081557, intron 4 of 23)	283734	NM_001081557	100072	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0.926	nan	0.641	1.584	0.864	0.415	0.588	1.514	1.018	1.054	0.514	0.587	0.514	0.513	0.973	1.130	0.530	1.173	3.085	1.258	1.340	6.469	1.272	1.417	1.029
1861	chr10	127812827	127814959	+	0	NA	3' UTR (NM_009040, exon 4 of 4)	3' UTR (NM_009040, exon 4 of 4)	-10323	NR_037604	380674	Mm.384871	NM_199313		Rdh18-ps	Rdh18	retinol dehydrogenase 18, pseudogene	pseudo	7.262	12.010	3.117	9.436	3.291	1.680	5.077	5.808	4.408	10.814	5.383	2.458	5.584	6.979	7.590	8.647	3.977	8.214	3.887	1.419	2.345	7.101	nan	3.611	13.053
2825	chr11	102156586	102160324	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-2048	NM_029649	76547	Mm.46529	NM_029649	ENSMUSG00000020921	Tmem101	2610511E22Rik	transmembrane protein 101	protein-coding	8.474	13.688	5.267	10.009	4.953	3.340	7.386	7.578	4.824	12.727	7.879	3.678	6.817	10.012	8.269	9.670	6.354	8.098	4.346	nan	3.741	4.998	nan	nan	12.758
3312	chr12	42142430	42144687	+	0	NA	Intergenic	L1Md_A|LINE|L1	-657501	NM_010733	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	6.050	nan	0.289	1.693	0.994	0.370	3.660	2.146	nan	3.032	0.411	0.662	7.287	5.190	5.094	5.606	7.005	4.197	nan	1.619	0.815	1.096	1.246	0.680	3.838
3415	chr12	72936684	72939324	+	0	NA	Intergenic	Intergenic	-1878	NM_011384	20476	Mm.57138	NM_011384	ENSMUSG00000021099	Six6	Optx2|Six9	sine oculis-related homeobox 6	protein-coding	3.900	3.329	2.080	5.431	1.720	1.010	1.595	1.809	3.521	3.262	1.650	1.225	2.809	2.462	3.073	5.156	1.847	4.882	1.540	1.011	0.645	2.943	0.999	0.438	4.059
7195	chr18	39400010	39402132	+	0	NA	Intergenic	Lx9|LINE|L1	86174	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	6.256	1.048	0.508	2.784	1.793	0.833	3.792	6.357	2.262	2.252	1.127	0.728	4.352	3.659	3.770	3.978	2.994	3.724	1.520	0.554	0.862	1.480	0.883	0.450	4.577
8797	chr2	150739437	150741240	+	0	NA	Intergenic	Intergenic	-8743	NM_172117	12497	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	4.397	3.958	3.164	2.111	3.272	3.139	6.549	9.101	3.189	2.031	2.985	5.096	7.638	4.983	3.109	2.127	4.322	3.855	nan	1.468	1.984	0.630	1.410	1.302	2.131
2897	chr11	106280232	106282016	+	0	NA	intron (NM_029467, intron 1 of 7)	intron (NM_029467, intron 1 of 7)	4452	NM_029467	75870	Mm.159608	NM_029467	ENSMUSG00000020712	Tcam1	4930570F09Rik|AI429105	testicular cell adhesion molecule 1	protein-coding	5.246	4.089	1.258	3.993	1.635	0.759	1.936	3.332	3.871	4.492	3.547	1.907	3.332	5.138	5.232	4.635	2.585	4.975	1.312	1.311	0.770	nan	1.228	0.542	4.593
4051	chr13	44594113	44595275	+	0	NA	Intergenic	Intergenic	-136080	NM_021878	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	2.179	0.519	0.453	nan	2.499	0.966	1.999	1.184	2.469	3.255	2.145	1.218	2.100	4.024	1.856	1.914	2.168	1.598	1.107	nan	0.138	0.410	0.593	0.166	1.154
7940	chr2	5205773	5208912	+	0	NA	intron (NM_028804, intron 2 of 2)	ID_B1|SINE|B4	69566	NM_028804	74186	Mm.274715	NM_028804	ENSMUSG00000026676	Ccdc3	2310045O21Rik	coiled-coil domain containing 3	protein-coding	5.936	0.690	0.925	1.490	2.082	1.436	6.415	6.023	4.030	3.061	3.834	3.084	7.914	5.001	6.069	7.762	6.386	5.926	1.060	0.493	0.432	1.458	0.640	0.511	5.629
15414	chr9	99199768	99207968	+	0	NA	Intergenic	Intergenic	33371	NM_001244762	623459	Mm.260891	NM_001244762	ENSMUSG00000096316	Faiml	EG623459|Gm6432	Fas apoptotic inhibitory molecule like	protein-coding	3.219	1.000	0.728	1.814	1.154	0.587	5.049	2.443	3.026	3.084	2.369	0.941	5.814	4.778	3.239	3.929	2.954	2.771	0.888	0.579	0.493	0.624	0.679	0.473	4.100
4195	chr13	60555797	60557482	+	0	NA	Intergenic	ID_B1|SINE|B4	-45308	NM_001285917	69635	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	4.166	1.104	0.228	2.879	1.191	0.395	2.844	1.222	2.179	2.781	4.141	4.132	2.835	5.008	3.624	3.167	1.663	4.700	0.813	0.627	0.573	0.807	0.414	0.267	6.407
1654	chr10	95355742	95357504	+	0	NA	intron (NR_045337, intron 1 of 2)	intron (NR_045337, intron 1 of 2)	20347	NR_045337	69629	Mm.250542	NR_045337	ENSMUSG00000100550	2310039L15Rik	-	RIKEN cDNA 2310039L15 gene	ncRNA	3.306	2.286	0.999	2.228	1.934	0.907	3.354	5.878	2.546	2.938	3.098	2.835	4.092	4.062	5.299	3.959	2.438	3.555	nan	1.839	0.819	2.758	1.711	1.044	2.837
4738	chr14	61383577	61385007	+	0	NA	intron (NM_008466, intron 9 of 16)	intron (NM_008466, intron 9 of 16)	-23847	NM_026598	68177	Mm.22758	NM_026598	ENSMUSG00000021928	Ebpl	5730442K12Rik|EBRP	emopamil binding protein-like	protein-coding	3.812	nan	0.401	4.068	0.943	0.520	1.915	2.685	2.455	2.493	1.922	1.963	2.704	3.183	3.519	3.288	1.270	4.156	0.654	0.712	0.265	0.881	0.182	0.428	3.920
5432	chr15	79595798	79602027	+	0	NA	intron (NM_010059, intron 4 of 13)	intron (NM_010059, intron 4 of 13)	6197	NR_103477	13404	Mm.2524	NM_010059	ENSMUSG00000022429	Dmc1	Dmc1h|Lim15|Mei11|sgdp	DNA meiotic recombinase 1	protein-coding	2.975	nan	0.375	nan	1.520	0.807	nan	2.146	1.363	nan	nan	0.631	4.829	4.440	3.325	3.569	2.912	3.277	0.941	0.463	0.459	nan	0.313	0.251	5.635
13359	chr7	87175883	87181365	+	0	NA	Intergenic	Intergenic	-68025	NM_001285835	50490	Mm.31748	NM_015760	ENSMUSG00000030562	Nox4	AI648021	NADPH oxidase 4	protein-coding	4.622	6.176	3.796	4.904	4.498	2.763	2.966	7.359	nan	4.434	2.910	2.086	3.637	5.479	3.987	nan	3.742	5.097	2.377	2.139	1.474	nan	2.450	1.781	nan
6740	chr17	56083340	56085834	+	0	NA	intron (NM_001331053, intron 3 of 15)	PB1D10|SINE|Alu	4956	NM_001304785	15193	Mm.12966	NM_008233	ENSMUSG00000002833	Hdgfrp2	HRP-2	hepatoma-derived growth factor, related protein 2	protein-coding	nan	4.422	2.268	7.194	7.583	6.451	7.045	5.677	4.635	5.510	5.038	3.752	5.445	8.374	5.911	5.447	6.494	5.884	3.037	3.912	3.915	2.741	4.776	5.677	5.833
10781	chr4	138654852	138669574	+	0	NA	Intergenic	Intergenic	-38221	NM_029401	75718	Mm.251530	NM_029401	ENSMUSG00000028753	Vwa5b1	4931403E03Rik	von Willebrand factor A domain containing 5B1	protein-coding	nan	0.934	0.524	1.428	0.823	0.671	1.157	1.467	nan	1.204	0.831	0.511	1.152	1.011	1.135	1.612	0.799	nan	4.471	2.149	2.017	7.634	nan	2.187	1.702
5719	chr15	102061626	102067083	+	0	NA	Intergenic	(CACG)n|Simple_repeat|Simple_repeat	-9419	NM_145625	75705	Mm.290022	NM_145625	ENSMUSG00000058655	Eif4b	2310046H11Rik|AL024095|C85189|Eif4a2	eukaryotic translation initiation factor 4B	protein-coding	3.113	5.458	2.172	4.728	2.805	1.678	2.899	5.192	2.453	3.620	4.461	1.601	3.465	7.263	4.195	nan	2.676	4.161	0.706	1.380	1.119	0.750	0.761	0.555	3.068
10059	chr4	46651766	46653451	+	0	NA	Intergenic	Intergenic	-2409	NM_198664	381605	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	7.027	nan	0.878	3.279	7.549	7.261	4.808	8.062	7.990	6.975	3.564	3.917	4.927	6.478	6.795	8.041	6.092	7.079	0.594	0.820	0.928	nan	0.758	0.807	6.486
4638	chr14	47322623	47325517	+	0	NA	TTS (NM_178684)	TTS (NM_178684)	25756	NM_178684	218975	Mm.212297	NM_178684	ENSMUSG00000021840	Mapk1ip1l	9130202B12|C130032J12Rik	mitogen-activated protein kinase 1 interacting protein 1-like	protein-coding	7.100	0.663	0.277	3.865	2.489	1.547	8.241	9.426	3.319	3.972	2.548	1.549	7.222	9.473	7.608	6.963	5.351	4.583	1.322	1.215	0.889	1.989	0.516	0.447	9.178
10077	chr4	48598591	48602699	+	0	NA	intron (NM_021436, intron 1 of 9)	intron (NM_021436, intron 1 of 9)	15452	NM_021436	230157	Mm.422686	NM_021436	ENSMUSG00000028347	Tmeff1	A830033E11|M7365|Tr1	transmembrane protein with EGF-like and two follistatin-like domains 1	protein-coding	2.605	nan	0.843	2.353	1.189	0.537	0.968	0.648	1.628	1.846	1.223	1.235	0.412	1.829	1.029	1.132	1.065	nan	7.877	6.256	3.999	nan	8.511	5.644	1.343
3268	chr12	33504313	33506879	+	0	NA	Intergenic	L1Md_A|LINE|L1	75972	NM_172253	28071	Mm.196472	NM_172253	ENSMUSG00000020561	Twistnb	2410173G11|2810024J17Rik|D16Wsu83e	twist basic helix-loop-helix transcription factor 1 neighbor	protein-coding	11.599	10.337	3.139	9.322	6.002	4.820	7.433	7.622	nan	8.023	4.765	3.561	9.060	9.300	8.867	10.962	8.912	8.086	nan	2.469	3.798	5.859	2.874	4.426	14.597
10674	chr4	134069344	134073373	+	0	NA	intron (NM_001162970, intron 1 of 19)	intron (NM_001162970, intron 1 of 19)	2906	NM_001162970	230806	Mm.240080	NM_001162970	ENSMUSG00000012123	Aim1l	-	absent in melanoma 1-like	protein-coding	3.780	0.828	0.596	4.570	4.848	4.569	5.543	5.339	nan	4.539	1.928	2.093	5.109	7.122	4.703	4.610	4.042	4.108	2.003	1.149	1.151	1.711	nan	1.417	4.366
3016	chr11	116907736	116909611	+	0	NA	Intergenic	MYSERV6-int|LTR|ERVK	-10190	NM_172948	268510	Mm.35141	NM_172948	ENSMUSG00000043857	Mgat5b	C330018B01|GnT-IX|mGnTVB	mannoside acetylglucosaminyltransferase 5, isoenzyme B	protein-coding	1.405	nan	0.474	1.097	0.557	0.505	nan	nan	0.711	nan	1.406	1.127	0.706	0.818	0.984	1.234	0.735	1.231	7.736	nan	3.583	8.564	4.485	3.276	1.186
6725	chr17	50218088	50220585	+	0	NA	Intergenic	Intergenic	-19872	NR_131975	446210	Mm.378184	NM_001004437	ENSMUSG00000067103	AY702103	STDP2	cDNA sequence AY702103	ncRNA	2.815	7.178	4.696	1.487	1.418	1.037	0.837	0.391	1.402	1.112	0.533	0.160	0.554	nan	0.812	1.051	nan	1.058	0.618	0.998	1.325	0.426	0.593	0.419	1.439
7406	chr18	76256643	76259175	+	0	NA	intron (NM_010754, intron 1 of 10)	intron (NM_010754, intron 1 of 10)	-3212	NM_001252481	17126	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	1.976	nan	0.934	1.733	2.422	1.223	3.058	5.596	1.988	nan	2.340	1.504	3.877	5.919	4.333	3.401	2.058	2.013	0.706	nan	0.804	0.727	0.972	0.565	3.134
12401	chr6	87139164	87141366	+	0	NA	intron (NM_054041, intron 17 of 17)	intron (NM_054041, intron 17 of 17)	35519	NM_001167937	52372	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	3.585	1.416	0.409	3.436	2.811	0.953	6.578	3.458	2.681	2.626	2.628	1.634	6.039	6.092	5.171	8.557	5.237	4.180	nan	0.558	0.328	1.073	0.551	0.336	5.157
13844	chr7	142356145	142357675	+	0	NA	intron (NM_001347541, intron 2 of 2)	intron (NM_001347541, intron 2 of 2)	15349	NM_177265	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.983	nan	0.037	0.997	0.164	0.016	0.742	0.545	nan	1.981	0.326	0.096	1.993	0.875	1.410	2.552	1.904	3.334	0.313	0.195	0.320	0.250	0.055		4.496
2855	chr11	103238561	103246745	+	0	NA	intron (NM_016896, intron 1 of 15)	intron (NM_016896, intron 1 of 15)	-24221	NM_177801	328019	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	5.521	2.735	1.140	4.289	4.835	2.341	4.797	5.431	4.505	4.478	4.415	2.888	5.242	7.612	6.495	6.514	3.924	6.778	1.963	1.198	0.777	nan	0.658	0.558	4.948
14873	chr9	15109300	15111699	+	0	NA	intron (NM_001164797, intron 1 of 19)	intron (NM_001164797, intron 1 of 19)	1609	NM_001164797	244698	Mm.325134	NM_001164797	ENSMUSG00000031936	Hephl1	Gm509|Zp|zyklopen	hephaestin-like 1	protein-coding	6.629	7.570	3.791	7.511	4.425	4.660	6.254	6.553	5.689	6.606	5.773	3.983	5.236	7.144	7.035	7.361	6.078	6.320	3.512	3.055	4.480	3.934	4.097	5.611	8.223
8908	chr2	158491805	158495769	+	0	NA	intron (NM_001291137, intron 29 of 30)	B2_Mm2|SINE|B2	-8825	NM_145635	246747	Mm.28800	NM_145635	ENSMUSG00000044405	Adig	SMAF-1|Smaf1	adipogenin	protein-coding	nan	19.642	5.820	6.244	1.412	0.691	1.400	1.062	nan	nan	2.022	0.492	nan	nan	2.238	3.085	1.595	4.200	nan	1.058	1.106	2.047	0.793	0.819	4.462
13720	chr7	130251468	130255338	+	0	NA	intron (NM_010207, intron 2 of 17)	intron (NM_010207, intron 2 of 17)	13405	NM_010207	14183	Mm.16340	NM_010207	ENSMUSG00000030849	Fgfr2	AU043015|AW556123|Bek|Fgfr-2|Fgfr-7|Fgfr7|KGFR|KGFRTr|svs	fibroblast growth factor receptor 2	protein-coding	5.864	2.472	1.099	3.264	7.034	4.069	9.509	10.418	4.516	5.898	7.871	4.506	7.414	8.396	5.988	5.163	4.298	5.935	1.219	1.384	0.959	1.724	1.451	0.845	4.026
11529	chr5	106108203	106115731	+	0	NA	Intergenic	Intergenic	-209373	NR_136913	102635633	Mm.383511	NR_136913	ENSMUSG00000105508	Gm32921	-	predicted gene, 32921	ncRNA	1.313	11.056	5.862	1.638	1.379	0.932	nan	1.928	1.380	1.211	0.724	1.260	1.331	1.665	1.239	1.177	0.896	1.358	nan	0.896	0.800	0.836	0.775	0.905	0.951
15082	chr9	52059383	52060939	+	0	NA	intron (NM_001104617, intron 1 of 10)	intron (NM_001104617, intron 1 of 10)	-11456	NR_023357	629557	Mm.422775	NR_023357		Gm6981	EG629557	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	2.568	0.855	0.335	2.219	1.333	0.827	1.376	3.286	2.286	2.813	1.549	1.023	1.344	4.771	3.676	3.198	1.497	3.832	0.674	0.641	0.319	1.092	0.501	0.074	nan
13034	chr7	26668257	26672643	+	0	NA	intron (NM_001081148, intron 8 of 8)	Lx6|LINE|L1	15980	NM_001081148	243881	Mm.294678	NM_001081148	ENSMUSG00000040650	Cyp2b23	EG243881	cytochrome P450, family 2, subfamily b, polypeptide 23	protein-coding	1.659	0.451	0.492	3.722	4.481	3.408	0.558	1.677	2.274	1.775	1.252	0.909	0.875	2.364	0.531	1.203	0.773	1.629	0.315	0.681	0.372	0.193	0.475	0.392	0.601
14356	chr8	77695033	77696906	+	0	NA	intron (NM_010332, intron 2 of 7)	intron (NM_010332, intron 2 of 7)	28483	NM_010332	13617	Mm.283168	NM_010332	ENSMUSG00000031616	Ednra	ET-AR|ETa|Gpcr10	endothelin receptor type A	protein-coding	6.038	nan	0.827	2.576	2.765	2.131	5.237	7.212	2.618	2.868	0.492	0.765	7.120	7.336	6.456	6.609	9.162	3.772	1.027	1.594	1.579	nan	3.253	3.059	4.921
6662	chr17	46008314	46011098	+	0	NA	Intergenic	Intergenic	15457	NM_001110267	22339	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	1.868	0.727	0.452	1.257	1.081	0.408	7.373	4.299	1.224	1.765	0.517	1.385	2.643	3.692	4.584	4.304	2.936	2.093	1.701	0.733	0.522	2.242	0.737	0.867	6.160
4810	chr14	70131527	70135092	+	0	NA	intron (NM_021328, intron 6 of 8)	intron (NM_021328, intron 6 of 8)	20482	NM_146055	219158	Mm.218284	NM_146055	ENSMUSG00000033712	Ccar2	2610301G19Rik|Dbc1|mKIAA1967	cell cycle activator and apoptosis regulator 2	protein-coding	6.898	5.315	1.718	6.610	3.713	1.740	6.408	8.476	5.298	6.024	5.642	3.746	6.325	8.228	8.151	8.235	4.875	7.584	3.726	nan	1.801	4.166	2.299	2.072	9.300
13652	chr7	121208909	121210755	+	0	NA	Intergenic	Intergenic	126394	NM_139310	246190	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	4.349	1.176	0.507	2.646	1.509	0.446	3.652	7.656	2.092	2.129	4.934	3.123	5.113	5.754	4.203	3.953	4.006	3.507	1.171	0.604	0.303	1.126	0.707	0.708	3.383
14581	chr8	109617813	109621030	+	0	NA	intron (NM_181544, intron 2 of 31)	intron (NM_181544, intron 2 of 31)	4904	NM_181544	244646	Mm.436810	NM_181544	ENSMUSG00000048827	Pkd1l3	-	polycystic kidney disease 1 like 3	protein-coding	6.440	6.887	4.171	4.830	6.008	5.736	4.833	6.439	3.586	5.722	3.487	2.795	5.215	6.855	4.733	6.095	5.640	5.658	3.623	3.696	4.968	nan	4.800	5.063	6.987
2145	chr11	49814457	49815459	+	0	NA	intron (NM_013529, intron 6 of 18)	intron (NM_013529, intron 6 of 18)	20803	NM_013529	14584	Mm.24402	NM_013529	ENSMUSG00000020363	Gfpt2	AI480523|GFAT2	glutamine fructose-6-phosphate transaminase 2	protein-coding	0.600	0.580	1.200	1.001	0.189	0.247	0.550	nan	0.846	0.258	0.327	0.659	0.155	0.106	0.506	nan	0.735	nan	nan	4.597	4.218	3.322	3.669	2.959	0.435
11803	chr5	136269469	136270940	+	0	NA	3' UTR (NM_009986, exon 24 of 24)	3' UTR (NM_009986, exon 24 of 24)	-25264	NM_018825	23921	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	4.374	4.799	1.694	2.976	1.969	1.031	3.920	4.002	3.028	2.800	3.558	1.467	2.687	5.454	3.969	3.470	1.999	3.007	2.067	2.178	0.733	4.174	3.310	1.455	5.434
8355	chr2	72884369	72885563	+	0	NA	Intergenic	MYSERV16_I-int|LTR|ERVK	-71249	NR_102349	76218	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	2.022	1.954	1.080	3.133	1.158	0.252	1.692	5.720	2.096	2.391	0.842	1.150	2.563	3.479	3.494	7.589	5.585	4.030	0.844	0.935	0.937	2.694	0.351	0.800	2.399
9685	chr3	107871496	107872521	+	0	NA	Intergenic	MTC|LTR|ERVL-MaLR	-5222	NM_133867	99662	Mm.108491	NM_133867	ENSMUSG00000040600	Eps8l3	AI504489|Eps8r3	EPS8-like 3	protein-coding	2.527	1.041	0.691	0.796	0.626		5.756	3.907	0.806	0.633	0.632	0.780	5.957	3.265	3.874	3.317	2.430	2.199	2.119	1.330	1.166	2.091	0.495	1.274	2.622
3693	chr12	106269397	106272421	+	0	NA	Intergenic	Intergenic	176757	NR_036593	76639	Mm.375609	NR_036593	ENSMUSG00000092066	1700121N20Rik	-	RIKEN cDNA 1700121N20 gene	ncRNA	6.877	6.931	1.815	6.536	1.760	1.411	4.808	nan	nan	5.632	3.563	3.153	5.252	6.287	6.886	8.436	4.845	7.223	5.424	1.849	2.170	4.867	1.972	2.374	13.502
8717	chr2	138086308	138088671	+	0	NA	Intergenic	Intergenic	-169095	NM_001025431	228662	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	6.102	0.641	0.387	5.472	3.885	1.570	2.303	4.552	4.633	5.962	3.244	1.888	3.757	4.579	3.063	4.652	4.370	6.095	1.294	1.922	0.918	2.002	1.740	0.771	5.027
739	chr1	153471490	153473038	+	0	NA	exon (NM_007842, exon 11 of 28)	exon (NM_007842, exon 11 of 28)	15396	NM_007842	13211	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	5.056	0.798	0.538	4.005	2.258	1.211	2.473	3.045	3.589	3.382	2.066	0.701	4.905	4.915	4.058	5.662	3.890	4.372	nan	1.153	0.960	1.229	nan	0.438	3.371
7437	chr18	83024011	83025980	+	0	NA	Intergenic	Intergenic	-104435	NR_033307	75853	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	6.785	1.844	0.900	4.572	2.822	1.194	4.872	6.099	4.368	5.635	9.056	3.168	6.522	7.401	6.366	7.130	4.809	6.657	1.906	1.575	0.963	2.627	1.844	0.620	7.557
8984	chr2	165656544	165658948	+	0	NA	intron (NM_010165, intron 1 of 15)	intron (NM_010165, intron 1 of 15)	2448	NM_010165	14049	Mm.282719	NM_010165	ENSMUSG00000017897	Eya2	Eab1	EYA transcriptional coactivator and phosphatase 2	protein-coding	2.626	1.131	0.375	2.732	1.214	0.912	0.979	2.588	1.003	1.706	7.636	2.465	1.473	nan	1.438	4.324	1.530	2.093	nan	1.236	0.978	2.153	1.012	0.684	1.654
876	chr1	173161324	173165268	+	0	NA	Intergenic	L1_Mur3|LINE|L1	21208	NM_146763	258758	Mm.223190	NM_146763	ENSMUSG00000058981	Olfr1406	MOR267-5	olfactory receptor 1406	protein-coding	8.416	2.178	1.293	5.598	4.829	4.195	5.673	4.637	4.304	5.629	3.278	1.110	6.051	8.308	6.559	9.614	7.349	5.266	0.926	1.374	1.234	0.808	0.528	0.705	7.388
7795	chr19	44354130	44365277	+	0	NA	Intergenic	B3A|SINE|B2	26377	NM_183216	329065	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	9.463	3.700	1.449	nan	8.953	6.307	11.733	11.770	6.933	8.639	5.523	2.908	7.889	12.690	7.562	9.958	10.449	nan	1.957	1.728	1.748	2.684	3.080	2.676	11.400
5636	chr15	99171891	99174677	+	0	NA	intron (NM_139140, intron 3 of 12)	intron (NM_139140, intron 3 of 12)	46439	NM_139140	72572	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	4.584	8.712	1.919	4.935	1.428	0.866	1.618	2.976	2.190	2.844	2.225	0.917	1.685	2.746	2.741	3.541	1.483	4.049	2.298	1.306	1.010	3.880	2.006	0.949	4.931
7989	chr2	18116188	18118927	+	0	NA	intron (NR_045539, intron 7 of 24)	B2_Mm1t|SINE|B2	52972	NM_001252561	17354	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	4.212	0.577	0.738	1.622	1.466	0.702	4.403	5.231	3.107	2.882	1.217	1.115	6.875	4.051	5.465	6.036	6.549	4.280	0.999	0.379	0.510	0.637	0.632	0.430	4.088
12905	chr7	4622967	4624830	+	0	NA	Intergenic	Intergenic	6584	NM_023440	68255	Mm.389784	NM_023440	ENSMUSG00000045282	Tmem86b	C330014O21Rik	transmembrane protein 86B	protein-coding	4.828	1.328	0.515	2.375	2.474	1.033	7.742	5.183	2.221	2.409	2.008	0.539	3.887	5.919	5.010	4.538	4.766	3.409	0.967	0.737	0.699	0.984	0.758	0.394	5.606
12906	chr7	4670426	4672647	+	0	NA	intron (NM_024172, intron 4 of 7)	ID_B1|SINE|B4	-12586	NM_172894	243819	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	6.071	0.859	0.811	2.589	3.228	2.215	4.799	6.237	2.879	3.058	0.535	0.754	4.903	5.439	4.268	5.127	6.088	4.041	0.655	1.261	0.895	0.516	0.660	0.565	5.725
8878	chr2	156554908	156559065	+	0	NA	intron (NM_026661, intron 3 of 3)	intron (NM_026661, intron 3 of 3)	9410	NM_001164818	68295	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	5.176	5.688	2.457	5.106	3.748	2.710	2.968	7.158	nan	4.163	2.674	1.415	nan	nan	4.591	8.609	5.082	nan	nan	2.424	2.219	2.909	2.948	2.158	7.898
7367	chr18	69783459	69791886	+	0	NA	Intergenic	L1Md_F3|LINE|L1	-137887	NM_201362	381175	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	1.736	7.379	3.601	1.621	1.115	0.439	0.553	0.876	1.224	1.182	0.864	0.432	0.582	0.784	1.212	1.287	0.903	1.752	2.089	0.976	0.518	2.057	0.821	0.392	1.023
9640	chr3	104415875	104417175	+	0	NA	Intergenic	RLTR31_Mur|LTR|ERVK	95393	NM_001310698	269473	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	1.614	0.769	0.377	1.287	0.680	0.300	2.040	1.712	1.274	0.966	0.288	0.295	2.987	3.127	1.899	2.451	2.202	2.887	1.177	0.788	0.553	0.345	0.781	0.494	3.094
4751	chr14	63781815	63785792	+	0	NA	intron (NM_173393, intron 1 of 2)	intron (NM_173393, intron 1 of 2)	56614	NR_030611	100124452		NR_030611	ENSMUSG00000076049	Mir598	Mirn598|mir-598|mmu-mir-598	microRNA 598	ncRNA	4.102	1.384	0.711	3.882	2.810	1.655	5.387	8.025	3.544	4.952	2.250	1.843	5.676	6.905	5.555	6.571	3.528	5.395	5.318	nan	2.933	4.845	4.530	5.117	7.543
3913	chr13	29079918	29084979	+	0	NA	Intergenic	Intergenic	66193	NR_045075	77920	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA	6.350	3.085	1.862	3.684	3.083	2.502	8.178	4.957	4.269	4.725	1.362	1.419	6.513	6.927	6.238	8.325	6.410	5.768	1.996	2.282	1.304	1.996	1.259	0.926	8.848
7151	chr18	36445668	36447881	+	0	NA	intron (NM_026027, intron 2 of 3)	intron (NM_026027, intron 2 of 3)	7721	NM_026027	67199	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	10.558	14.559	3.924	13.232	7.791	7.810	11.730	11.492	7.018	16.750	7.638	5.136	11.180	12.105	10.352	12.147	8.501	11.110	7.393	2.957	8.556	7.616	4.985	11.382	22.145
3624	chr12	99962935	99965691	+	0	NA	promoter-TSS (NM_001164426)	promoter-TSS (NM_001164426)	-186	NM_001164426	217826	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	5.351	0.666	0.653	2.716	2.425	1.457	4.448	2.708	4.192	2.805	0.886	0.596	9.219	5.051	4.776	7.440	7.196	4.195	0.725	0.535	0.425	0.505	0.884	0.584	5.879
7266	chr18	57824583	57826139	+	0	NA	Intergenic	Intergenic	-53317	NM_009194	20496	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	3.392	nan	0.306	1.830	0.862	0.387	10.304	9.003	4.723	4.123	4.402	2.519	8.335	5.646	6.941	6.946	6.068	2.734	nan	1.528	0.540	nan	1.551	0.930	nan
8393	chr2	79237919	79240554	+	0	NA	Intergenic	Intergenic	-16190	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	1.830	0.322	0.407	nan	0.136	0.092	1.126	1.987	1.848	0.765	3.121	4.258	1.923	0.792	nan	nan	1.477	0.910	0.482	0.415	0.506	0.980	0.207	0.153	nan
3803	chr12	119538482	119541252	+	0	NA	Intergenic	RMER16C|LTR|ERVK	96457	NM_001163136	238455	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	nan	9.098	3.345	7.749	4.913	2.575	5.610	5.348	2.661	5.985	4.298	1.993	4.556	8.426	5.824	7.777	7.361	6.420	5.431	3.628	3.292	5.048	5.032	4.898	11.704
772	chr1	158321554	158323480	+	0	NA	intron (NM_207583, intron 1 of 7)	intron (NM_207583, intron 1 of 7)	33743	NM_207583	240843	Mm.329579	NM_207583	ENSMUSG00000004031	Brinp2	6430517E21Rik|BB361039|Fam5b|mKIAA1747	bone morphogenic protein/retinoic acid inducible neural-specific 2	protein-coding	4.154	0.621	0.548	0.723	0.330	0.193	1.506	0.949	nan	1.376	0.222	0.422	1.824	1.507	1.714	3.326	2.446	2.429	nan	0.326	0.127	0.437	nan	0.068	4.779
8053	chr2	27394655	27397531	+	0	NA	intron (NM_009500, intron 1 of 27)	intron (NM_009500, intron 1 of 27)	31515	NR_133905	22325	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	5.929	6.261	1.899	4.293	2.394	1.606	5.678	7.101	nan	4.604	2.967	2.197	7.503	6.670	6.333	8.663	6.795	5.663	5.077	3.031	1.921	5.491	3.962	2.535	6.635
4514	chr14	21621740	21626554	+	0	NA	intron (NM_017479, intron 6 of 16)	intron (NM_017479, intron 6 of 16)	90429	NM_001013826	435391	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	5.003	1.390	0.709	3.547	2.769	1.449	4.688	4.539	nan	3.401	7.025	2.889	4.216	6.795	6.595	6.231	4.058	4.908	1.019	0.686	0.666	nan	0.413	0.434	7.162
7536	chr19	9055177	9074355	+	0	NA	intron (NM_001286518, intron 6 of 6)	intron (NM_001286518, intron 6 of 6)	23190	NM_011681	22287	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	8.750	5.182	2.118	6.512	5.520	2.568	6.544	9.136	nan	5.211	6.786	3.843	5.196	8.750	5.398	6.341	6.280	7.142	0.956	1.944	1.324	1.270	2.154	1.334	8.846
4651	chr14	48131013	48137138	+	0	NA	intron (NM_033602, intron 1 of 5)	intron (NM_033602, intron 1 of 5)	13206	NM_033602	93834	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	4.034	3.162	3.360	2.706	5.444	3.422	2.941	5.753	3.042	2.931	3.736	2.841	3.582	5.000	3.647	3.583	3.509	2.725	1.402	1.291	0.850	0.612	1.166	0.913	3.007
6775	chr17	63847786	63850548	+	0	NA	Intergenic	Intergenic	-14814	NM_001037997	14158	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	6.819	14.207	3.491	10.864	3.800	3.609	8.657	5.974	4.838	18.693	5.735	3.965	6.387	7.654	9.796	12.340	5.267	9.504	4.882	1.464	4.588	5.872	2.671	6.970	18.721
2032	chr11	22679632	22681903	+	0	NA	Intergenic	L1_Mus3|LINE|L1	168484	NM_153596	103765	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	4.796	2.836	1.452	3.107	2.827	1.362	1.265	3.226	2.260	3.183	1.988	1.388	1.302	2.099	1.694	2.786	1.732	2.735	0.925	1.370	1.024	1.184	0.832	0.420	3.109
8256	chr2	58430434	58432128	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-73523	NM_001111030	269275	Mm.77751	NM_001033369	ENSMUSG00000026834	Acvr1c	ACTR-IC|ACVRLK7|ALK7|Alk-7|C230097P10	activin A receptor, type IC	protein-coding	1.203	0.454	0.562	0.475	1.086	0.717	1.480	2.448	1.103	0.781	2.504	2.469	1.545	1.465	0.867	1.261	2.699	0.983	3.406	3.411	2.420	1.604	3.840	3.613	0.771
13144	chr7	48887773	48889295	+	0	NA	Intergenic	Intergenic	-7493	NM_001013368	108961	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	5.822	9.962	2.281	7.240	1.650	0.999	6.195	6.739	3.632	4.720	3.012	1.592	4.587	5.421	7.242	8.277	5.024	7.292	4.758	2.238	1.602	6.164	2.953	1.975	8.397
7813	chr19	45769652	45771848	+	0	NA	intron (NM_023799, intron 7 of 15)	intron (NM_023799, intron 7 of 15)	12541	NM_023799	76055	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	2810009A20Rik|4833427O07Rik|5830447M11Rik|AA408215|Hy5|Ncoat|OGA|mKIAA0679	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	3.985	0.398	0.497	nan	1.439	1.045	3.765	1.273	1.886	2.604	1.046	0.366	6.345	5.105	3.013	5.076	7.056	4.608	0.533	0.442	0.507	0.357	0.437	0.523	8.220
653	chr1	136106335	136109293	+	0	NA	intron (NM_001081023, intron 33 of 43)	intron (NM_001081023, intron 33 of 43)	23369	NR_046168	329253	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21|OTTMUSG00000026868	predicted gene 15850	ncRNA	5.126	0.879	0.440	nan	0.911	0.343	2.468	2.203	1.310	1.610	0.428	0.305	2.242	2.517	2.543	4.229	3.598	2.274	3.067	1.264	0.774	4.674	1.016	0.881	6.024
7582	chr19	11556736	11563682	+	0	NA	Intergenic	Intergenic	23360	NM_025658	66607	Mm.441056	NM_025658	ENSMUSG00000024678	Ms4a4d	2210417J23Rik	membrane-spanning 4-domains, subfamily A, member 4D	protein-coding	1.617	8.246	3.999	1.470	0.521	0.575	0.938	0.612	nan	0.788	0.283	0.378	0.411	0.501	1.090	nan	1.126	1.272	0.427	1.439	0.912	0.376	0.314	0.402	0.520
8274	chr2	59883639	59885416	+	0	NA	Intergenic	ORR1F|LTR|ERVL-MaLR	-1921	NM_028118	72137	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	7.348	2.692	1.984	4.229	4.478	2.006	2.413	5.925	4.288	3.650	1.892	1.200	4.269	4.963	3.767	5.526	4.170	5.137	1.670	2.155	1.909	1.236	2.118	1.591	3.392
1692	chr10	101974172	101977508	+	0	NA	intron (NM_001205098, intron 2 of 7)	intron (NM_001205098, intron 2 of 7)	-183018	NM_001162368	67569	Mm.25252	NM_026243	ENSMUSG00000019888	Mgat4c	9130411I17Rik|GntIVh	MGAT4 family, member C	protein-coding	11.484	0.579	0.472	4.714	2.908	1.745	5.057	6.372	4.156	4.484	nan	4.863	7.209	6.643	4.348	4.483	9.298	5.316	nan	2.355	2.112	nan	1.746	1.203	5.786
2677	chr11	95153910	95156265	+	0	NA	intron (NR_040279, intron 1 of 2)	intron (NR_040279, intron 1 of 2)	-9286	NM_007867	13394	Mm.439766	NM_007867	ENSMUSG00000020871	Dlx4	Dlx-4|Dlx7	distal-less homeobox 4	protein-coding	4.631	5.809	2.887	5.003	2.387	1.377	1.538	1.263	2.935	2.297	1.726	1.215	1.326	2.208	1.997	2.871	1.942	3.341	1.154	nan	1.062	1.074	nan	nan	1.944
4866	chr14	76978779	76984676	+	0	NA	Intergenic	Intergenic	54890	NM_172488	210808	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase (multicopper oxidoreductase) domain containing 1	protein-coding	2.875	0.849	0.461	2.819	2.848	2.450	5.382	6.986	4.607	4.202	2.151	2.335	7.058	5.871	5.587	6.390	3.098	3.992	2.804	1.400	0.998	1.500	2.968	2.530	3.693
4273	chr13	84487864	84489469	+	0	NA	Intergenic	L1Md_T|LINE|L1	266370	NM_175187	72745	Mm.295063	NM_175187	ENSMUSG00000035762	Tmem161b	2810446P07Rik|AI843389	transmembrane protein 161B	protein-coding	3.832	6.896	3.766	1.737	1.342	0.531	3.406	4.238	2.780	3.981	3.415	2.012	2.879	5.069	2.922	3.543	2.585	3.541	0.504	0.989	0.375	0.380	0.703	0.340	3.107
5439	chr15	79841875	79845768	+	0	NA	Intergenic	B4|SINE|B4	-9488	NM_001013362	504193	Mm.38438	NM_029079	ENSMUSG00000089837	Npcd	Cbx6-Nptxr	neuronal pentraxin chromo domain	protein-coding	7.690	6.211	1.346	11.727	2.055	1.583	13.839	11.926	5.092	17.532	nan	3.269	12.244	10.038	10.762	10.106	nan	10.447	4.150	1.304	2.491	5.220	3.283	4.726	14.502
14374	chr8	82458173	82459581	+	0	NA	Intergenic	Intergenic	-56291	NM_008357	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	3.757	0.924	0.479	2.592	0.485	0.154	1.362	2.393	3.122	2.544	0.337	0.116	3.534	3.714	3.479	6.991	2.902	2.666	0.491	0.241	0.093	nan	0.300	0.137	nan
8283	chr2	60638599	60640420	+	0	NA	intron (NM_021359, intron 7 of 14)	intron (NM_021359, intron 7 of 14)	34184	NM_021359	16420	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	5.393	2.796	1.162	4.388	2.695	1.574	4.733	7.269	3.200	3.883	1.569	2.033	3.570	5.436	5.739	5.337	5.080	5.856	4.187	2.404	1.774	4.895	2.326	1.963	5.636
6834	chr17	71605860	71607457	+	0	NA	Intergenic	ORR1A2-int|LTR|ERVL-MaLR	-7897	NR_027952	68789	Mm.75202	NR_015549	ENSMUSG00000085492	Trmt61b	1110039F03Rik|623451|Gm6431	tRNA methyltransferase 61B	ncRNA	5.780	1.439	0.492	1.607	1.462	0.462	1.116	1.913	1.945	1.610	3.054	1.427	2.320	4.667	2.978	3.517	1.449	4.149	1.396	0.699	0.844	1.032	0.380	0.420	3.531
11321	chr5	67271715	67276097	+	0	NA	intron (NM_001285452, intron 5 of 6)	MERVL-int|LTR|ERVL	13341	NM_030108	67878	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	3.853	0.662	0.613	3.301	2.128	0.859	2.705	0.693	3.164	3.405	0.468	0.358	1.459	2.450	1.715	4.601	3.156	5.055	1.077	0.962	0.232	nan	1.062	0.587	3.435
367	chr1	83094881	83098024	+	0	NA	Intergenic	Intergenic	-20314	NM_016960	20297	Mm.116739	NM_016960	ENSMUSG00000026166	Ccl20	CKb4|LARC|MIP-3A|MIP-3[a]|MIP3A|ST38|Scya20|exodus-1	chemokine (C-C motif) ligand 20	protein-coding	5.111	0.766	0.734	1.407	2.261	1.296	5.006	3.870	2.484	2.271	1.246	0.895	4.971	3.542	4.183	6.783	6.236	4.608	0.802	0.438	0.211	nan	0.412	0.165	2.375
6790	chr17	66230038	66236068	+	0	NA	Intergenic	Intergenic	109533	NM_001003919	320209	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	6.145	5.823	1.739	5.696	3.636	2.009	5.641	6.936	nan	6.293	4.460	1.845	4.722	7.921	6.550	9.016	5.499	5.920	3.588	2.011	2.007	3.921	2.775	2.389	9.332
14961	chr9	34969038	34972174	+	0	NA	intron (NM_001190913, intron 4 of 13)	intron (NM_001190913, intron 4 of 13)	-146122	NR_029475	78934	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	5.939	2.933	2.038	4.681	3.885	1.394	3.584	5.193	4.956	4.165	6.671	3.786	5.582	6.272	4.779	5.263	2.493	5.510	nan	1.101	0.788	2.030	0.735	0.414	7.079
1821	chr10	122323433	122326253	+	0	NA	Intergenic	Intergenic	-123656	NM_016847	54140	Mm.4351	NM_016847	ENSMUSG00000020123	Avpr1a	AVPR|Avpr1|V1a|V1aR	arginine vasopressin receptor 1A	protein-coding	4.121	2.257	0.757	5.166	2.898	2.123	0.798	2.770	4.207	4.623	1.788	2.207	5.065	5.469	5.905	6.012	3.562	4.910	0.845	1.052	0.981	1.742	0.795	0.436	7.572
10494	chr4	123253829	123255546	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	21131	NM_013905	56198	Mm.103615	NM_013905	ENSMUSG00000032744	Heyl	Hey3|Hrt3|bHLHb33|hesr3	hairy/enhancer-of-split related with YRPW motif-like	protein-coding	3.582	6.325	3.242	2.907	3.654	2.294	1.471	2.382	3.455	2.826	4.048	3.876	1.802	2.860	1.857	2.054	2.209	3.183	1.752	4.178	1.922	1.044	1.717	1.008	0.931
5741	chr15	103187963	103190165	+	0	NA	Intergenic	Intergenic	-25780	NM_027885	71726	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	6.039	1.734	0.870	4.382	4.786	3.387	1.292	2.166	2.291	3.070	1.741	0.986	1.948	3.620	2.628	2.424	1.809	2.824	1.019	1.494	1.085	0.702	1.105	0.674	3.192
5599	chr15	96608992	96611055	+	0	NA	intron (NM_001166458, intron 3 of 15)	intron (NM_001166458, intron 3 of 15)	31939	NM_134086	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	2.557	3.001	1.274	1.929	0.837	0.703	3.448	4.174	1.769	2.362	1.263	0.547	4.130	4.143	4.604	2.840	4.483	3.139	0.779	0.887	0.238	0.716	0.440	0.387	2.359
7756	chr19	38676001	38677829	+	0	NA	intron (NM_019588, intron 3 of 31)	intron (NM_019588, intron 3 of 31)	142322	NM_021315	57753	Mm.86482	NM_021315	ENSMUSG00000024999	Noc3l	AF233884|Fad24	NOC3 like DNA replication regulator	protein-coding	3.680	0.661	0.611	0.867	0.915	0.135	9.093	8.422	3.261	1.831	0.474	4.954	2.725	4.576	4.199	3.302	4.474	2.136	0.382	0.814	0.429	1.023	0.425	0.564	1.207
743	chr1	153535432	153539015	+	0	NA	intron (NM_028749, intron 3 of 11)	intron (NM_028749, intron 3 of 11)	12491	NM_028749	74091	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	9.390	3.071	2.041	4.594	5.020	3.914	3.094	3.925	4.863	5.606	5.476	2.778	5.813	5.833	3.508	5.187	4.345	5.449	nan	1.311	1.302	1.046	nan	1.300	3.972
6037	chr16	34350783	34356806	+	0	NA	intron (NM_001164268, intron 5 of 33)	Charlie4a|DNA|hAT-Charlie	160233	NM_001164268	545156	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	nan	0.966	0.585	5.591	4.808	2.567	6.093	5.356	5.276	7.240	0.686	0.743	11.315	10.216	5.566	5.335	3.323	4.913	2.088	0.765	0.765	1.542	1.708	1.209	4.147
15682	chrX	12818071	12822633	+	0	NA	intron (NR_045852, intron 4 of 4)	intron (NR_045852, intron 4 of 4)	58074	NR_045852	552913	Mm.216846	NR_045852	ENSMUSG00000085891	Gm14634	OTTMUSG00000017535	predicted gene 14634	ncRNA	5.940	3.653	1.652	5.057	2.784	1.730	4.630	5.521	4.086	4.262	3.855	2.131	4.403	5.029	5.855	5.572	4.215	5.642	3.528	2.475	2.142	3.916	2.824	1.961	5.589
7342	chr18	65857071	65858860	+	0	NA	Intergenic	Lx7|LINE|L1	-15521	NM_175012	225642	Mm.20298	NM_175012	ENSMUSG00000024517	Grp	BLP	gastrin releasing peptide	protein-coding	6.596	2.415	0.804	3.873	1.316	0.353	3.397	5.869	2.261	2.624	3.704	1.482	3.598	4.202	3.976	3.766	2.218	5.851	4.328	1.012	0.696	3.856	1.492	1.134	4.985
11013	chr5	8356352	8359193	+	0	NA	intron (NM_001310440, intron 2 of 30)	intron (NM_001310440, intron 2 of 30)	10388	NM_001007221	11496	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	3.780	1.087	0.674	4.306	3.416	2.112	4.553	4.096	2.366	3.361	0.890	1.153	3.462	4.122	6.049	7.163	5.926	3.106	1.477	1.077	0.585	0.960	0.902	0.859	3.591
10625	chr4	132256627	132259843	+	0	NA	intron (NM_001122992, intron 1 of 10)	intron (NM_001122992, intron 1 of 10)	3314	NM_020273	56809	Mm.103489	NM_020273	ENSMUSG00000028901	Gmeb1	1110050A04Rik|AI256615|AI481278	glucocorticoid modulatory element binding protein 1	protein-coding	1.726	0.706	0.764	2.791	4.990	3.685	1.669	1.249	2.756	3.482	0.852	1.795	1.950	5.281	1.969	1.626	1.509	2.705	1.946	1.288	1.611	1.049	0.909	1.047	1.683
8835	chr2	153417227	153419848	+	0	NA	intron (NM_001001986, intron 3 of 7)	intron (NM_001001986, intron 3 of 7)	25942	NM_001001986	329540	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	nan	0.707	0.439	0.499	0.471	0.788	4.009	8.322	nan	nan	1.258	2.056	nan	2.685	2.508	2.926	1.657	nan	4.538	3.992	5.375	5.948	2.207	2.100	nan
14100	chr8	27086530	27090410	+	0	NA	intron (NM_054044, intron 1 of 18)	intron (NM_054044, intron 1 of 18)	2629	NM_054044	78560	Mm.87046	NM_054044	ENSMUSG00000031486	Adgra2	8430414O08Rik|9530074E10Rik|Gpr124|Tem5|mKIAA1531	adhesion G protein-coupled receptor A2	protein-coding	3.187	nan	1.016	3.442	1.569	0.597	3.267	3.708	1.649	3.107	1.351	0.854	2.776	5.905	7.635	5.269	3.938	4.458	1.164	0.895	0.327	nan	0.605	0.731	5.779
11352	chr5	74456871	74466150	+	0	NA	intron (NM_178672, intron 4 of 4)	intron (NM_178672, intron 4 of 4)	70232	NM_178672	212986	Mm.134147	NM_178672	ENSMUSG00000062110	Scfd2	E430013M20Rik|STXBP1L1	Sec1 family domain containing 2	protein-coding	6.195	2.789	1.024	6.231	3.241	1.797	6.708	6.278	5.415	6.834	4.210	3.010	5.290	7.620	5.176	8.424	5.945	7.901	2.373	1.140	0.925	2.614	1.867	1.500	7.658
6753	chr17	56629597	56630708	+	0	NA	intron (NM_175350, intron 1 of 21)	IAPLTR2a|LTR|ERVK	2009	NM_175350	106757	Mm.23401	NM_175350	ENSMUSG00000040828	Catsperd	4921529N20Rik|4933402B14Rik|619718|AW045609|Gm6095|Tmem146	catsper channel auxiliary subunit delta	protein-coding	1.112	nan	0.356	1.329	2.981	1.239	5.149	4.326	1.722	2.478	1.622	0.313	2.134	4.441	3.558	4.080	1.761	1.785	1.225	0.434		0.824	1.072	0.677	2.439
15527	chr9	110782249	110784457	+	0	NA	Intergenic	PB1D7|SINE|Alu	-14832	NM_153099	235628	Mm.292285	NM_153099	ENSMUSG00000044664	Prss42	Tessp2	protease, serine 42	protein-coding	11.162	5.248	1.090	12.385	5.152	3.373	9.609	12.413	9.292	12.281	10.885	5.413	10.905	15.094	10.968	13.305	5.236	14.094	2.532	2.027	2.424	4.327	2.919	1.937	19.235
14769	chr8	126787540	126791766	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	156268	NM_024214	67952	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding	2.413	4.103	0.760	4.572	3.391	1.587	nan	5.975	2.146	2.401	1.981	1.076	2.860	4.391	4.405	5.824	2.313	3.627	nan	1.386	1.235	4.763	1.520	nan	5.025
10837	chr4	141651167	141654768	+	0	NA	intron (NM_001347237, intron 1 of 18)	B1_Mus1|SINE|Alu	11148	NM_001347237	69582	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	3.917	5.146	3.234	3.589	3.649	2.644	3.602	4.117	nan	3.224	2.756	2.381	3.029	3.886	3.354	3.611	1.901	nan	3.800	2.446	3.256	6.791	nan	4.025	5.076
1755	chr10	116130239	116132234	+	0	NA	intron (NM_011217, intron 2 of 13)	intron (NM_011217, intron 2 of 13)	-12662	NM_001161837	19279	Mm.336316	NM_011217	ENSMUSG00000020151	Ptprr	Gmcp1|PTP-SL|PTPBR7|RPTPRR|mPTP213	protein tyrosine phosphatase, receptor type, R	protein-coding	1.339	0.542	0.449	1.016	1.285	0.748	1.559	0.784	1.089	0.996	6.818	4.116	1.022	2.034	1.057	0.901	1.114	1.586	0.605	0.351	0.259	0.595	0.377	0.411	0.818
1138	chr10	19714260	19716936	+	0	NA	intron (NM_172786, intron 1 of 6)	intron (NM_172786, intron 1 of 6)	3011	NM_172786	237313	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	3.720	2.378	1.712	1.367	4.232	2.671	2.356	3.516	nan	2.578	1.156	1.588	1.439	nan	2.251	2.507	2.996	2.112	1.119	1.195	0.920	0.849	1.532	1.170	nan
488	chr1	107558781	107561593	+	0	NA	Intergenic	Intergenic	-29819	NM_011459	20725	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	11.171	nan	2.881	8.211	3.424	1.350	8.722	6.098	4.674	7.857	5.154	3.203	8.089	6.372	7.502	11.232	5.783	8.542	3.055	2.408	1.681	3.402	2.384	2.246	12.721
14107	chr8	28056779	28058462	+	0	NA	Intergenic	Intergenic	27233	NR_033590	666422	Mm.484413	NR_033590	ENSMUSG00000110372	Gm8096	EG666422	3-phosphoglycerate dehydrogenase pseudogene	pseudo	4.955	nan	0.536	1.158	1.447	0.732	5.430	3.252	3.640	4.904	1.166	1.214	9.376	5.548	3.913	6.072	6.789	5.678	0.704	1.164	0.437	nan	0.703	0.574	5.354
12432	chr6	89609006	89619148	+	0	NA	Intergenic	Intergenic	-18425	NM_001167736	66098	Mm.20313	NM_025351	ENSMUSG00000030086	Chchd6	0710001P09Rik|1700021B03Rik	coiled-coil-helix-coiled-coil-helix domain containing 6	protein-coding	4.042	0.742	0.372	2.705	1.683	1.009	1.707	2.023	1.418	1.848	0.434	0.270	4.750	7.405	4.348	10.686	6.540	3.999	nan	0.879	0.715	1.362	0.779	0.637	8.691
1012	chr1	191134248	191137349	+	0	NA	Intergenic	Lx8|LINE|L1	29019	NM_001109759	619288	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	2.405	0.443	0.687	1.313	3.670	4.420	3.010	2.355	1.306	1.144	0.812	0.797	2.252	2.833	1.697	nan	4.273	1.885	1.217	0.980	1.390	0.478	1.537	1.819	1.234
9350	chr3	60441978	60443986	+	0	NA	Intergenic	(GAA)n|Simple_repeat|Simple_repeat	-29848	NM_001253713	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.675	0.716	0.204	nan	0.412	0.193	0.566	0.689	0.472	0.619	5.095	0.896	0.552	0.461	nan	nan	0.592	nan	0.596	0.364	0.277	0.368	0.202	0.238	0.511
1032	chr1	193215040	193222380	+	0	NA	Intergenic	Intergenic	-17164	NM_153137	215243	Mm.261259	NM_153137	ENSMUSG00000037318	Traf3ip3	6030423D04Rik|AI115021|T3jam	TRAF3 interacting protein 3	protein-coding	8.281	9.403	3.460	7.828	4.061	2.458	6.488	5.561	6.159	9.653	4.269	2.844	7.765	8.021	7.195	9.438	6.602	9.462	3.875	2.123	1.384	3.508	nan	2.353	nan
6701	chr17	47765779	47767810	+	0	NA	intron (NM_001161723, intron 1 of 8)	intron (NM_001161723, intron 1 of 8)	-18950	NM_011549	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	9.766	7.988	4.939	6.648	7.733	4.978	11.849	10.560	4.235	10.036	6.878	4.621	6.000	12.187	7.518	9.995	12.551	6.058	7.321	11.254	7.822	6.248	14.451	11.773	13.870
4071	chr13	46313087	46314506	+	0	NA	Intergenic	Intergenic	40075	NM_001005422	380842	Mm.188108	NM_001005422	ENSMUSG00000063529	Stmnd1	Gm1574	stathmin domain containing 1	protein-coding	1.220	1.702	1.281	nan	0.955	0.265	1.688	0.857	0.842	1.806	0.508	0.574	1.446	3.756	2.887	2.589	1.489	1.967	1.894	nan	0.475	1.903	1.360	1.274	nan
6584	chr17	35203941	35209285	+	0	NA	Intergenic	Intergenic	-1262	NM_010735	16992	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	2.446	0.920	0.601	2.543	4.796	2.494	5.444	5.529	2.755	3.005	2.523	1.762	3.398	6.520	5.824	5.141	4.197	3.839	3.313	1.953	1.545	3.072	2.905	2.245	4.093
8474	chr2	101816164	101818145	+	0	NA	intron (NM_001110849, intron 2 of 9)	intron (NM_001110849, intron 2 of 9)	-19447	NM_001083810	72446	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	4.941	0.565	0.361	3.001	1.268	1.230	4.409	5.574	3.299	2.841	0.312	0.462	6.414	4.437	4.814	7.451	5.717	5.659	0.510	0.326	0.457	0.649	0.630	0.242	8.979
3855	chr13	16020828	16024073	+	0	NA	intron (NM_008380, intron 4 of 4)	intron (NM_008380, intron 4 of 4)	10599	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	1.166	0.500	0.163	1.110	1.139	0.331	0.450	0.749	0.608	0.776	6.037	0.893	0.424	nan	0.605	0.666	nan	0.680	0.448	0.529	0.823	0.223	0.485	0.324	nan
342	chr1	78533152	78534650	+	0	NA	intron (NM_026713, intron 6 of 6)	MER34|LTR|ERV1	22841	NM_026713	68393	Mm.41325	NM_026713	ENSMUSG00000012187	Mogat1	0610030A14Rik|1110064N14Rik|Dgat2l|Dgat2l1|MGAT1|WI1-2612I11.1|mDC2	monoacylglycerol O-acyltransferase 1	protein-coding	4.307	3.584	2.266	2.681	1.411	0.962	3.689	3.162	2.208	2.369	1.809	1.244	5.315	3.827	2.863	4.885	5.069	nan	nan	nan	0.954	2.267	nan	0.710	3.263
11612	chr5	115986877	115996412	+	0	NA	intron (NM_007708, intron 39 of 46)	MTEa|LTR|ERVL-MaLR	32784	NM_031869	19079	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	5.527	2.341	0.874	6.255	3.531	2.575	7.252	5.625	3.585	5.086	4.867	2.727	5.673	8.318	7.778	7.168	4.161	5.896	nan	nan	1.676	2.021	nan	1.877	9.899
4943	chr14	106198440	106204845	+	0	NA	Intergenic	Intergenic	95444	NR_073203	212085	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding	4.753	0.382	0.310	4.064	4.463	3.095	5.790	5.597	5.743	6.638	2.723	2.220	6.765	8.324	6.864	8.063	4.351	7.068	1.223	0.904	0.964	1.154	1.101	0.876	5.683
7588	chr19	12047886	12052593	+	0	NA	Intergenic	Intergenic	9511	NM_146681	258676	Mm.377634	NM_146681	ENSMUSG00000067528	Olfr1424	MOR239-2	olfactory receptor 1424	protein-coding	5.377	0.780	0.384	2.538	2.125	1.100	4.260	9.415	nan	1.985	2.772	1.369	4.796	6.414	5.643	4.691	6.902	5.226	0.413	0.618	0.599	0.583	0.412	0.304	6.171
11701	chr5	124107517	124108421	+	0	NA	Intergenic	IAPEz-int|LTR|ERVK	-4331	NM_001347478	66627	Mm.7050	NM_025671	ENSMUSG00000023707	Ogfod2	1300006G11Rik|5730405M13Rik|AU041636|AW552395	2-oxoglutarate and iron-dependent oxygenase domain containing 2	protein-coding	2.285	0.757	0.649	3.320	2.266	0.794	2.235	1.839	2.250	1.888	1.090	1.182	1.892	3.585	2.746	3.011	3.049	2.194	nan	1.162	0.294	0.901	nan	0.190	2.617
11277	chr5	65566671	65569692	+	0	NA	intron (NM_001310619, intron 2 of 5)	PB1|SINE|Alu	30936	NM_001310619	53323	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	4.217	0.874	0.537	1.979	1.697	0.967	10.998	6.895	3.313	4.055	0.739	0.786	7.774	7.416	8.004	8.421	7.659	3.179	1.452	1.399	0.782	nan	2.167	1.238	4.516
8928	chr2	160622938	160624490	+	0	NA	Intergenic	MER33|DNA|hAT-Charlie	-22183	NM_009408	21969	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	6.922	1.827	1.038	4.406	2.230	0.905	3.014	5.907	3.346	3.530	1.002	1.092	3.846	4.204	3.765	5.887	4.678	6.095	nan	0.666	0.272	0.711	0.509	0.275	4.503
14538	chr8	108152034	108154905	+	0	NA	Intergenic	L1MEd|LINE|L1	431208	NR_077224	109215	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	1.228	7.768	6.913	1.026	1.031	0.945	0.706	1.203	0.860	0.979	0.470	0.556	0.589	0.862	0.822	0.981	1.421	1.065	0.813	1.685	2.703	nan	1.090	1.520	0.721
2883	chr11	105849094	105851583	+	0	NA	intron (NM_181071, intron 10 of 25)	MERVL-int|LTR|ERVL	93809	NM_007805	13056	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	3.013	0.700	0.347	5.898	1.400	1.228	0.831	1.219	nan	2.280	0.615	0.755	0.826	1.912	1.389	1.817	0.943	2.758	0.470	0.591	0.675	nan	0.552	0.192	2.945
10799	chr4	140170877	140174200	+	0	NA	intron (NM_198610, intron 1 of 9)	B4A|SINE|B4	74273	NM_198610	230868	Mm.298731	NM_198610	ENSMUSG00000040972	Igsf21	BC055811|Gm141	immunoglobulin superfamily, member 21	protein-coding	4.812	1.013	0.625	5.013	5.271	3.016	7.707	7.285	4.118	4.160	5.738	2.373	6.805	9.696	7.324	7.975	2.665	5.020	2.704	1.545	1.509	6.720	nan	1.506	9.968
2540	chr11	80631086	80635130	+	0	NA	intron (NM_177390, intron 16 of 21)	intron (NM_177390, intron 16 of 21)	-124002	NR_126552	77417	Mm.437510	NR_126552	ENSMUSG00000085078	C030013C21Rik	-	RIKEN cDNA C030013C21 gene	ncRNA	nan	1.177	0.398	4.379	2.822	1.559	4.626	6.428	4.250	3.532	1.918	2.659	5.249	4.511	4.545	6.471	3.087	5.728	0.571	0.628	nan	0.922	0.377	0.408	3.669
8622	chr2	124727772	124732813	+	0	NA	Intergenic	Intergenic	76711	NM_199239	214968	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	4.426	0.597	0.334	1.697	3.159	0.906	3.596	3.951	3.357	1.701	1.818	0.574	4.934	7.354	2.320	2.856	2.504	1.439	nan	0.548	0.256	0.818	0.447	0.271	2.179
14815	chr8	129247125	129248537	+	0	NA	Intergenic	RLTR10|LTR|ERVK	-13785	NM_153780	72139	Mm.426514	NM_153780	ENSMUSG00000071302	2610044O15Rik8	2610044O15Rik	RIKEN cDNA 2610044O15 gene	protein-coding	2.333	2.617	0.940	2.469	1.966	0.909	1.746	7.180	3.485	2.758	1.794	2.972	5.218	4.006	3.888	4.407	1.599	4.960	nan	0.243	0.270	nan	0.748	nan	2.451
3793	chr12	118258518	118263545	+	0	NA	intron (NM_009239, intron 4 of 5)	L1MB7|LINE|L1	40409	NM_009239	20688	Mm.34699	NM_009239	ENSMUSG00000025323	Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding	nan	0.605	0.340	1.178	1.243	0.482	0.996	1.697	1.548	1.979	0.243	0.364	1.675	1.983	1.693	2.369	1.540	1.556	3.452	1.813	1.165	4.696	0.993	0.728	2.756
2284	chr11	60689801	60693042	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-8269	NM_001159405	16897	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	lethal giant larvae homolog 1 (Drosophila)	protein-coding	7.302	7.406	2.386	7.192	4.285	2.909	6.875	5.712	4.947	10.361	4.336	3.068	8.108	8.697	7.789	9.893	5.985	7.495	3.877	2.266	2.242	4.028	2.723	3.048	10.149
5830	chr16	16865662	16867217	+	0	NA	Intergenic	RLTR23|LTR|ERV1	-2454	NM_001190325	16136	Mm.184441	NM_001190325	ENSMUSG00000075370	Igll1	BB139905|Igl-5|Igll|Lambda5	immunoglobulin lambda-like polypeptide 1	protein-coding	8.382	0.630	0.415	1.960	3.542	1.681	4.215	5.266	3.178	4.887	6.512	3.037	2.088	4.966	1.362	5.408	2.323	5.654	0.839	0.966	0.405	0.605	0.802	0.554	5.629
8677	chr2	131757800	131761912	+	0	NA	Intergenic	Intergenic	87800	NR_029381	414081	Mm.246905	NR_029381	ENSMUSG00000086822	5330413P13Rik	-	RIKEN cDNA 5330413P13 gene	ncRNA	5.807	1.770	0.708	1.721	3.180	1.519	2.308	2.556	2.253	2.873	3.257	2.014	1.841	2.668	2.395	5.745	3.576	3.720	nan	0.824	0.587	0.799	0.549	0.324	6.183
64	chr1	30773809	30777446	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	87629	NM_001081080	213109	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik|mKIAA0244	PHD finger protein 3	protein-coding	11.554	nan	0.238	5.651	3.641	2.180	6.185	4.162	5.633	6.617	1.653	0.769	8.430	7.960	6.666	10.344	9.679	7.689	0.395	1.051	0.572	0.571	0.825	0.640	9.643
10170	chr4	62846622	62848166	+	0	NA	Intergenic	Intergenic	-118180	NM_028326	72701	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	2.689	0.890	0.407	1.967	0.770	0.292	3.733	2.385	2.001	2.324	0.406	1.120	4.034	4.197	5.908	6.652	3.391	2.766	nan	0.837	0.770	1.581	1.214	0.736	5.122
14943	chr9	32305515	32319448	+	0	NA	Intergenic	Intergenic	31756	NM_010605	16521	Mm.69472	NM_010605	ENSMUSG00000032034	Kcnj5	GIRK4|Kir3.4	potassium inwardly-rectifying channel, subfamily J, member 5	protein-coding	3.836	11.186	4.210	2.830	1.417	0.692	0.854	0.849	1.825	1.926	1.738	0.625	1.178	1.509	1.608	nan	1.244	2.070	2.355	2.564	1.414	4.938	0.697	0.488	2.590
4085	chr13	47137352	47139664	+	0	NA	intron (NM_146042, intron 1 of 7)	intron (NM_146042, intron 1 of 7)	10162	NR_126083	319467	Mm.447279	NR_126083		A930002C04Rik	-	RIKEN cDNA A930002C04 gene	ncRNA	3.416	4.815	1.368	nan	1.744	0.815	3.105	3.923	2.834	5.614	3.059	1.990	3.884	4.248	4.633	5.640	2.378	4.609	2.979	nan	1.320	3.564	1.397	2.338	6.903
5590	chr15	96289558	96292225	+	0	NA	intron (NM_175251, intron 3 of 20)	intron (NM_175251, intron 3 of 20)	3369	NM_175251	77044	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	12.256	17.590	5.957	10.159	6.771	5.170	13.395	14.936	5.856	16.689	8.117	4.729	11.497	11.564	10.807	11.533	9.541	9.643	5.987	3.654	4.516	6.286	5.179	7.996	16.498
11920	chr5	144270105	144274334	+	0	NA	intron (NM_025833, intron 12 of 13)	intron (NM_025833, intron 12 of 13)	-4842	NR_040432	100504231	Mm.441035	NR_040432	ENSMUSG00000086894	Gm15708	OTTMUSG00000025583	predicted gene 15708	ncRNA	5.193	1.498	0.836	5.442	5.253	3.041	1.792	4.090	nan	4.004	4.547	2.029	2.170	4.172	3.535	3.833	2.278	4.734	0.838	1.014	0.965	0.790	0.594	0.439	4.120
45	chr1	20846253	20848395	+	0	NA	Intergenic	GA-rich|Low_complexity|Low_complexity	-27111	NM_008563	17215	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|p1.m	minichromosome maintenance complex component 3	protein-coding	3.133	0.525	0.456	2.019	3.341	1.712	3.805	2.563	4.209	3.548	3.198	3.190	5.318	4.310	3.734	5.745	3.211	5.330	0.426	0.401	0.321	0.232	0.471	0.176	2.229
5124	chr15	37129771	37131764	+	0	NA	Intergenic	Intergenic	-102269	NM_026496	252973	Mm.244612	NM_026496	ENSMUSG00000022286	Grhl2	0610015A08Rik|BOM|Tcfcp2l3|clft3	grainyhead-like 2 (Drosophila)	protein-coding	2.762	1.213	0.522	1.345	1.678	1.158	3.287	6.608	2.315	2.693	7.352	3.292	4.864	4.794	3.458	2.902	3.349	3.424	0.941	1.804	1.447	2.732	0.858	0.624	2.274
12039	chr6	7793780	7799668	+	0	NA	Intergenic	ORR1A0-int|LTR|ERVL-MaLR	-48500	NM_052993	94192	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	7.168	7.539	3.444	5.177	5.448	3.182	9.559	10.928	6.013	9.074	8.019	5.797	5.837	10.531	6.232	10.336	9.387	6.942	5.705	2.786	2.148	3.555	5.310	4.283	nan
4172	chr13	56214370	56218267	+	0	NA	Intergenic	Intergenic	27622	NR_131023	75245	Mm.159475	NR_131023	ENSMUSG00000097361	4930550C17Rik	-	RIKEN cDNA 4930550C17 gene	ncRNA	6.694	1.683	0.977	6.883	5.128	2.856	4.176	5.182	5.702	8.084	3.059	2.242	4.956	8.161	4.644	7.288	3.526	8.296	2.104	1.413	1.484	2.428	0.637	0.636	8.242
4426	chr13	113560384	113563185	+	0	NA	Intergenic	Intergenic	56780	NM_130796	170625	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	4.287	1.662	0.647	5.796	3.535	1.829	1.093	0.804	1.855	2.166	1.745	0.958	1.289	4.000	1.910	1.372	0.544	2.931	0.837	0.345	0.629	1.617	0.636	0.523	nan
5334	chr15	75444047	75452426	+	0	NA	Intergenic	MTB|LTR|ERVL-MaLR	-1216	NM_001347049	102637705		NM_001347049	ENSMUSG00000093626	Ly6l	Gm20654	lymphocyte antigen 6 complex, locus L	protein-coding	nan	3.363	1.048	nan	1.101	0.331	nan	1.639	1.418	nan	nan	0.592	1.419	nan	2.176	2.498	nan	2.402	3.760	1.935	1.425	nan	2.287	1.506	2.560
6346	chr17	13878614	13883673	+	0	NA	intron (NM_010806, intron 22 of 32)	intron (NM_010806, intron 22 of 32)	-67230	NM_001122977	635895	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	5.885	1.096	0.566	6.199	2.778	1.679	7.473	6.202	5.008	4.328	6.628	3.943	5.720	6.491	6.418	7.302	4.603	7.559	1.186	1.108	0.796	1.532	1.336	1.165	7.429
6526	chr17	31396477	31402845	+	0	NA	intron (NM_008804, intron 1 of 18)	intron (NM_008804, intron 1 of 18)	13427	NM_001163748	18585	Mm.10812	NM_008804	ENSMUSG00000041119	Pde9a	PDE9A1	phosphodiesterase 9A	protein-coding	0.443	10.005	7.126	0.969	0.517	0.331	0.668	0.528	0.473	0.521	0.592	0.583	0.363	0.511	0.385	nan	0.742	0.626	1.617	1.459	1.165	2.257	1.663	1.342	0.674
13908	chr7	149844141	149847053	+	0	NA	Intergenic	Intergenic	4530762	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	nan	nan	1.143	nan	0.781	0.367	0.508	0.431	nan	1.304	0.171	0.345	0.393	0.767	0.596	0.613	0.231	0.474	5.181	1.062	1.255	3.901	nan	8.306	nan
10442	chr4	118920375	118921680	+	0	NA	Intergenic	B3|SINE|B2	-3562	NM_001011870	258214	Mm.454498	NM_001011870	ENSMUSG00000096705	Olfr1329	MOR259-2	olfactory receptor 1329	protein-coding	3.123	1.388	0.108	6.166	0.981	0.328	1.523	1.204	3.259	3.322	2.909	1.837	3.334	4.388	4.077	3.665	1.095	5.191	2.065	0.300	0.410	1.515	0.539	0.368	6.499
1173	chr10	22595976	22598579	+	0	NA	Intergenic	RLTR13C2|LTR|ERVK	-47734	NM_178934	353169	Mm.473705	NM_178934	ENSMUSG00000037490	Slc2a12	GLUT-12|Glut12	solute carrier family 2 (facilitated glucose transporter), member 12	protein-coding	3.315	0.546	0.259	1.627	0.649	0.352	0.517	0.726	nan	1.451	0.289	0.344	3.129	nan	2.643	4.473	4.708	2.068	0.513	0.701	0.283	0.350	0.101	0.218	3.564
11606	chr5	115933839	115936885	+	0	NA	intron (NM_007708, intron 15 of 46)	intron (NM_007708, intron 15 of 46)	89066	NM_031869	19079	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	4.897	4.298	2.006	4.545	3.462	1.977	4.143	6.127	4.233	3.145	2.837	2.542	4.195	4.961	5.900	5.114	4.642	4.625	nan	nan	2.938	3.822	4.254	3.499	4.327
1963	chr11	8420542	8426588	+	0	NA	Intergenic	Intergenic	240970	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	nan	0.958	0.373	3.287	1.021	0.339	4.253	4.111	2.596	2.828	5.327	2.911	4.478	3.511	2.378	4.110	1.582	3.795	1.549	nan	0.698	1.437	1.735	1.066	2.292
4656	chr14	51489408	51491055	+	0	NA	Intergenic	L1Md_T|LINE|L1	38269	NM_009486	22301	Mm.482572	NM_009486	ENSMUSG00000070448	Vmn2r89	V2r10|V2r11	vomeronasal 2, receptor 89	protein-coding	8.870	10.754	3.653	8.234	5.425	3.083	6.293	9.959	6.205	7.183	5.650	3.722	6.724	8.814	7.554	8.920	5.336	7.596	5.352	3.055	2.992	6.463	4.856	4.078	10.876
15672	chrX	10291373	10297532	+	0	NA	intron (NM_008769, intron 4 of 9)	intron (NM_008769, intron 4 of 9)	42147	NM_008769	18416	Mm.2611	NM_008769	ENSMUSG00000031173	Otc	AI265390|Sf|spf	ornithine transcarbamylase	protein-coding	4.647	5.620	1.976	5.281	2.179	1.041	3.130	3.871	3.871	4.643	3.333	2.330	4.190	5.494	4.410	6.460	3.087	5.732	3.861	2.174	1.570	4.378	2.642	1.896	7.686
10905	chr4	149228790	149231695	+	0	NA	intron (NM_207682, intron 20 of 46)	intron (NM_207682, intron 20 of 46)	-63535	NM_001081274	110208	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	5.423	10.623	4.322	2.950	1.820	1.201	1.555	1.555	2.626	3.526	2.614	1.209	1.425	2.673	2.003	2.513	1.697	2.606	5.875	2.193	1.666	4.962	7.540	6.384	3.044
2085	chr11	35582255	35583557	+	0	NA	intron (NM_011412, intron 9 of 35)	intron (NM_011412, intron 9 of 35)	-33910	NR_029799	723924		NR_029799	ENSMUSG00000065583	Mir218-2	Mirn218-2|mir-218-2	microRNA 218-2	ncRNA	6.289	7.539	3.175	9.153	5.115	4.093	6.071	5.828	5.358	11.125	6.247	3.435	4.836	7.258	6.929	7.920	5.331	7.367	4.142	1.511	4.320	4.769	2.648	4.389	9.959
1733	chr10	111262725	111266709	+	0	NA	intron (NM_175489, intron 6 of 23)	intron (NM_175489, intron 6 of 23)	-33962	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	3.778	0.511	0.232	2.901	3.014	1.572	3.769	2.788	5.660	5.653	3.542	3.384	5.791	6.515	5.029	5.589	3.090	6.240	0.613	0.522	0.277	0.913	0.356	0.218	4.115
6943	chr17	87360053	87364987	+	0	NA	intron (NM_028639, intron 17 of 19)	intron (NM_028639, intron 17 of 19)	65221	NM_029298	75467	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	4.496	11.267	4.253	6.248	3.638	2.511	2.514	5.485	3.082	6.652	3.400	2.238	3.614	5.032	5.251	6.563	4.464	4.073	3.757	1.955	2.467	4.819	1.820	2.531	10.062
5028	chr15	7881352	7882703	+	0	NA	intron (NM_001081402, intron 17 of 17)	intron (NM_001081402, intron 17 of 17)	66477	NM_001301357	14573	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	3.115	0.713	0.436	2.547	2.182	0.637	3.289	5.085	3.308	3.016	1.299	1.258	4.830	4.595	4.296	5.592	3.881	5.729	0.803	0.229	0.272	0.982	0.195	0.145	2.720
2113	chr11	44705184	44708786	+	0	NA	intron (NM_007897, intron 6 of 15)	B1_Mur3|SINE|Alu	88885	NM_001290710	13591	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0.354	7.948	4.307	0.808	0.341	0.207	0.357	nan	0.435	0.468	0.243	0.225	0.131	0.257	0.475	nan	0.265	nan	nan	0.835	0.546	nan	nan	0.233	0.364
2153	chr11	50091830	50092996	+	0	NA	intron (NM_001290750, intron 5 of 7)	intron (NM_001290750, intron 5 of 7)	22711	NR_029769	723845		NR_029769	ENSMUSG00000065417	Mir340	Mirn340|mir-340|mmu-mir-340	microRNA 340	ncRNA	3.090	1.035	0.884	2.301	2.175	1.143	4.649	3.150	2.528	1.818	1.079	2.365	4.069	3.823	3.815	4.995	5.462	3.287	2.468	1.668	1.418	2.135	nan	1.470	1.560
14036	chr8	13027302	13029982	+	0	NA	intron (NM_010172, intron 1 of 7)	intron (NM_010172, intron 1 of 7)	2608	NM_010172	14068	Mm.4827	NM_010172	ENSMUSG00000031443	F7	AI132620|Cf7|FVII	coagulation factor VII	protein-coding	9.879	0.714	0.684	5.237	6.869	3.985	2.972	7.271	5.210	7.469	0.983	0.725	7.324	10.971	5.289	8.813	9.915	5.726	0.843	1.647	1.235	1.942	1.168	0.740	8.670
3383	chr12	70583534	70606527	+	0	NA	intron (NR_037248, intron 4 of 4)	intron (NR_037248, intron 4 of 4)	141876	NM_028339	72736	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	5.718	3.378	1.938	4.348	3.839	2.276	5.100	3.233	5.088	6.687	2.869	1.931	6.907	8.403	7.131	nan	6.458	6.115	1.964	2.659	1.678	2.987	1.737	1.258	10.969
6534	chr17	31880890	31887914	+	0	NA	Intergenic	L1_Mus2|LINE|L1	-28610	NM_010831	17691	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Msk|Sik|Snf1lk	salt inducible kinase 1	protein-coding	3.737	7.582	3.099	3.730	5.083	2.959	5.050	6.120	3.141	6.217	9.270	4.475	3.582	6.288	3.164	nan	2.536	3.230	1.072	1.096	1.180	3.275	0.830	0.699	3.646
120	chr1	39247879	39251478	+	0	NA	intron (NM_008719, intron 1 of 20)	intron (NM_008719, intron 1 of 20)	55406	NM_008719	18143	Mm.2380	NM_008719	ENSMUSG00000026077	Npas2	MOP4|bHLHe9	neuronal PAS domain protein 2	protein-coding	7.394	2.093	0.825	2.540	1.551	1.616	3.538	3.687	1.509	4.049	2.350	1.604	3.056	3.222	4.516	nan	4.180	6.604	2.152	1.198	1.570	4.735	1.307	1.937	9.385
8645	chr2	127715991	127717286	+	0	NA	intron (NM_145532, intron 1 of 3)	intron (NM_145532, intron 1 of 3)	13259	NM_145532	228576	Mm.133036	NM_145532	ENSMUSG00000027377	Mall	BC012256|BENE	mal, T cell differentiation protein-like	protein-coding	4.941	1.516	0.481	2.927	0.631	0.360	3.822	7.559	2.890	3.486	1.603	1.081	6.428	3.849	6.041	8.261	4.835	6.079	nan	0.511	0.530	2.406	0.592	0.370	7.517
2568	chr11	85700276	85702477	+	0	NA	TTS (NR_045875)	TTS (NR_045875)	18368	NR_045875	71489	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	2.729	0.547	0.272	4.425	1.049	0.480	1.569	0.772	1.543	1.884	1.063	0.652	0.839	1.709	0.768	1.248	0.888	1.965	0.676	0.779	0.445	nan	0.721	0.243	nan
13269	chr7	73338634	73346909	+	0	NA	intron (NR_040324, intron 1 of 2)	intron (NR_040324, intron 1 of 2)	32391	NR_105062	100505025	Mm.445959	NR_105062	ENSMUSG00000108530	LOC100505025	-	uncharacterized LOC100505025	ncRNA	0.964	12.983	6.022	nan	0.683	0.295	2.186	1.071	1.268	1.176	0.746	0.534	1.118	1.259	1.425	nan	0.918	1.752	0.954	0.905	0.492	0.799	0.356	0.379	nan
7238	chr18	53903132	53905555	+	0	NA	intron (NM_152809, intron 3 of 12)	Lx8|LINE|L1	42230	NM_152809	70425	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	9.072	10.022	4.410	8.027	8.235	8.093	8.594	10.550	6.696	8.687	6.230	4.351	8.786	9.103	7.988	9.545	9.600	9.615	nan	3.202	5.317	6.684	4.989	5.511	nan
2841	chr11	102955030	102959736	+	0	NA	TTS (NR_037963)	TTS (NR_037963)	6771	NR_037963	69739	Mm.276539	NR_037963	ENSMUSG00000085338	2410004I01Rik	-	RIKEN cDNA 2410004I01 gene	ncRNA	4.584	nan	0.951	3.356	4.237	2.471	6.884	5.890	4.564	5.188	7.416	4.719	4.763	8.086	6.241	6.647	3.821	6.252	0.686	nan	0.798	1.030	nan	nan	6.065
7773	chr19	41902770	41905801	+	0	NA	Intergenic	RLTR13D3A1|LTR|ERVK	-7586	NM_023418	18648	Mm.16783	NM_023418	ENSMUSG00000011752	Pgam1	2310050F24Rik|Pgam-1	phosphoglycerate mutase 1	protein-coding	3.848	6.135	2.841	5.723	2.596	1.715	5.904	7.561	3.650	7.610	3.162	2.198	6.055	5.874	6.720	6.709	7.292	6.227	1.935	2.105	2.647	4.519	5.670	6.195	9.366
6280	chr16	97905088	97908969	+	0	NA	intron (NM_174847, intron 2 of 13)	intron (NM_174847, intron 2 of 13)	15605	NM_174847	207781	Mm.1465	NM_174847	ENSMUSG00000045975	C2cd2	5730563M15|5830404H04Rik|AI314146|AI449533|BF168443|ORF25|mKIAA4045	C2 calcium-dependent domain containing 2	protein-coding	5.365	0.594	0.304	3.713	4.194	2.286	4.628	6.313	3.655	3.480	4.126	3.532	6.518	5.954	5.195	7.057	3.691	6.561	nan	0.716	0.679	0.776	1.330	0.880	6.345
10104	chr4	56594127	56597448	+	0	NA	Intergenic	ORR1D1|LTR|ERVL-MaLR	145638	NM_025271	11471	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Tact1	actin-like 7b	protein-coding	0.345	nan	0.236	0.263	0.258	0.065	nan	0.428	0.536	0.481	7.280	2.461	0.100	0.199	0.338	0.511	0.295	0.598	nan	0.254	0.255	0.455	0.535	0.280	0.392
4670	chr14	54830570	54833614	+	0	NA	Intergenic	ORR1D2|LTR|ERVL-MaLR	28398	NM_183174	239099	Mm.280994	NM_183174	ENSMUSG00000057156	Homez	mKIAA1443	homeodomain leucine zipper-encoding gene	protein-coding	0.805	7.037	1.566	1.270	0.494	0.160	0.312	nan	0.638	0.748	0.452	0.423	0.276	0.440	0.810	0.817	0.490	0.829	0.591	0.367	0.242	0.391	0.247	0.069	0.954
2442	chr11	74197072	74200853	+	0	NA	Intergenic	Lx2B2|LINE|L1	3457	NM_207622	404316	Mm.246537	NM_207622	ENSMUSG00000070378	Olfr403	IA7|MOR125-5_p|Olfr43	olfactory receptor 403	protein-coding	nan	1.784	0.681	0.592	0.303	0.130	nan	1.014	0.557	0.410	0.406	0.293	0.666	nan	nan	nan	0.197	nan	7.539	7.082	4.413	17.467	6.404	2.907	1.043
1987	chr11	12373380	12375404	+	0	NA	intron (NM_172496, intron 4 of 14)	intron (NM_172496, intron 4 of 14)	37748	NM_001282994	12808	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	5.018	0.577	0.384	2.383	1.922	0.731	5.583	5.263	4.574	4.807	1.175	0.602	6.579	4.995	5.111	6.816	6.294	4.768	0.999	nan	0.471	0.546	0.598	0.325	3.554
11622	chr5	117568761	117574479	+	0	NA	intron (NM_001312914, intron 4 of 19)	intron (NM_001312914, intron 4 of 19)	157618	NM_001312914	333050	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	10.488	2.994	1.696	5.927	5.846	3.448	12.356	8.139	5.983	8.946	5.807	3.006	8.435	11.291	9.134	8.624	7.814	7.936	nan	nan	1.928	1.823	nan	2.484	9.570
4920	chr14	101947404	101949903	+	0	NA	Intergenic	Intergenic	108030	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	4.942	nan	0.360	2.985	2.025	1.635	3.794	6.456	4.079	3.777	0.552	0.410	3.793	6.617	7.738	7.544	5.349	4.593	0.718	0.655	0.320	0.638	0.944	0.531	8.783
5931	chr16	24402743	24406062	+	0	NA	intron (NM_178665, intron 1 of 12)	intron (NM_178665, intron 1 of 12)	-10747	NR_037954	68841	Mm.361995	NR_037954		Lppos	1110054M08Rik|AI481106	LIM domain containing preferred translocation partner in lipoma, opposite strand	ncRNA	3.761	1.163	1.181	3.559	6.514	3.767	5.690	9.099	4.334	4.801	3.208	3.086	6.582	9.188	6.068	nan	3.109	7.191	1.554	0.908	0.521	1.022	nan	1.840	4.734
11479	chr5	100465806	100474138	+	0	NA	intron (NM_001346583, intron 4 of 12)	intron (NM_001346583, intron 4 of 12)	28601	NM_001115010	231506	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	6.548	6.077	2.026	5.491	4.901	3.924	7.608	6.475	4.868	8.017	4.488	2.431	6.414	8.372	7.060	7.876	6.245	6.109	3.798	2.089	2.264	3.200	2.995	3.648	8.318
8862	chr2	155707308	155709701	+	0	NA	intron (NM_145537, intron 9 of 10)	intron (NM_145537, intron 9 of 10)	-16120	NM_001163452	56407	Mm.234944	NM_019828	ENSMUSG00000038324	Trpc4ap	4833429F06Rik|D2Ertd113e|Trrp4ap|mFLJ00177|truss	transient receptor potential cation channel, subfamily C, member 4 associated protein	protein-coding	2.283	1.086	0.326	1.061	0.747	0.268	1.299	4.449	1.830	1.489	0.813	0.988	4.194	2.775	2.385	4.587	3.180	3.291	nan	0.903	0.687	1.849	1.075	0.634	2.827
12805	chr6	136501833	136504756	+	0	NA	Intergenic	Intergenic	-15557	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	4.607	5.668	3.724	3.536	2.832	1.177	5.489	5.565	5.547	5.378	1.397	2.387	7.081	5.386	8.047	8.085	10.751	6.672	nan	1.598	0.520	1.611	1.202	0.847	4.197
4911	chr14	99822007	99823144	+	0	NA	Intergenic	Intergenic	327221	NM_010636	16597	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	4.103	nan	0.116	2.454	3.337	2.249	3.365	5.642	3.422	3.017	5.019	6.149	4.437	3.812	4.937	4.231	2.996	5.221	1.124	0.953	1.061	0.635	1.392	0.664	nan
15479	chr9	107423433	107425469	+	0	NA	intron (NM_001174047, intron 1 of 38)	intron (NM_001174047, intron 1 of 38)	-12285	NR_039580	100628590		NR_039580	ENSMUSG00000092761	Mir5120	mmu-mir-5120|mu-mir-5120	microRNA 5120	ncRNA	0.636	3.542	0.960	1.101	0.409	0.242	0.761	1.212	nan	nan	0.411	0.433	0.568	0.676	1.295	nan	0.406	nan	7.869	5.425	4.194	7.396	5.706	4.529	nan
2602	chr11	87510498	87516685	+	0	NA	intron (NM_001199293, intron 13 of 30)	intron (NM_001199293, intron 13 of 30)	-64798	NM_001284398	18952	Mm.2214	NM_011129	ENSMUSG00000020486	Sept4	ARTS|Bh5|OTTMUSG00000001265|Pnutl2	septin 4	protein-coding	3.675	1.272	0.584	2.464	1.907	0.844	2.708	3.791	3.045	2.754	1.149	1.013	4.037	3.838	3.692	5.136	3.053	4.181	0.561	0.684	0.344	nan	0.369	0.348	4.035
13224	chr7	56500831	56502533	+	0	NA	intron (NM_021879, intron 23 of 23)	intron (NM_021879, intron 23 of 23)	261911	NM_021879	18431	Mm.137052	NM_021879	ENSMUSG00000030450	Oca2	D7H15S12|D7Icr28RN|D7Nic1|p|p<cas>	oculocutaneous albinism II	protein-coding	nan	5.423	1.532	5.746	1.624	0.864	2.055	3.174	3.340	7.298	1.630	2.550	3.860	4.857	4.537	5.135	2.993	6.663	6.679	1.709	1.990	6.630	3.292	5.717	9.388
399	chr1	88931422	88933302	+	0	NA	Intergenic	Intergenic	-83751	NR_040471	73475	Mm.491040	NR_040471	ENSMUSG00000099378	1700067G17Rik	-	RIKEN cDNA 1700067G17 gene	ncRNA	6.104	2.677	0.832	4.008	1.405	1.092	3.255	1.918	2.685	4.324	3.429	1.487	4.230	3.758	4.134	8.103	4.939	4.356	1.832	1.014	1.329	3.790	1.785	1.478	8.692
11842	chr5	137733998	137736513	+	0	NA	exon (NM_175521, exon 3 of 6)	exon (NM_175521, exon 3 of 6)	4743	NM_175521	243300	Mm.74750	NM_175521	ENSMUSG00000045348	Nyap1	6430598A04Rik	neuronal tyrosine-phosphorylated phosphoinositide 3-kinase adaptor 1	protein-coding	9.881	7.168	2.777	9.262	4.958	2.081	11.037	8.691	5.089	8.478	6.699	6.297	8.039	12.898	11.753	10.591	9.245	8.071	6.023	4.290	2.801	7.260	4.893	4.641	12.813
436	chr1	92495198	92500620	+	0	NA	Intergenic	L1_Mur3|LINE|L1	-6156	NM_001011525	258228	Mm.377386	NM_001011525	ENSMUSG00000057464	Olfr1415	MOR103-12	olfactory receptor 1415	protein-coding	6.983	2.272	1.413	4.744	5.336	3.648	5.514	5.038	3.794	4.839	2.903	3.248	5.973	5.275	4.924	9.007	6.433	6.259	1.961	1.596	1.273	nan	1.872	1.987	5.197
7837	chr19	46708411	46711622	+	0	NA	intron (NM_020577, intron 5 of 10)	RMER30|DNA|hAT-Charlie	2573	NM_020577	57344	Mm.28566	NM_020577	ENSMUSG00000003559	As3mt	2310045H08Rik|Cyt19	arsenic (+3 oxidation state) methyltransferase	protein-coding	4.003	0.916	1.195	nan	4.828	2.777	4.271	5.141	2.387	2.287	1.504	1.638	3.824	4.504	3.032	4.242	6.833	4.004	0.415	1.553	0.965	0.550	0.899	1.137	4.856
14434	chr8	89281088	89284064	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	-238414	NM_021390	58198	Mm.214361	NM_021390	ENSMUSG00000031665	Sall1	Msal-3	sal-like 1 (Drosophila)	protein-coding	3.280	3.014	1.170	4.124	3.180	2.398	2.126	4.365	nan	3.246	0.864	0.667	4.126	4.449	5.591	5.893	5.176	4.811	2.422	1.931	2.378	3.418	2.419	2.438	4.044
213	chr1	58851226	58855404	+	0	NA	Intergenic	Intergenic	50813	NM_001080126	12370	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	14.049	9.164	5.219	6.835	10.060	7.339	9.726	8.059	6.097	8.275	6.351	6.317	7.327	9.791	6.888	nan	10.238	6.292	4.810	5.911	5.508	4.334	5.623	5.953	8.625
5114	chr15	36352839	36354570	+	0	NA	Intergenic	Intergenic	-70557	NM_013923	30945	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	4.095	2.143	0.880	3.075	1.405	0.682	2.489	2.516	2.615	3.604	0.650	0.435	3.512	4.598	4.014	1.869	1.149	6.186	1.635	0.328	0.142	nan	0.386	0.314	3.342
6424	chr17	26489353	26493192	+	0	NA	Intergenic	Intergenic	17200	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.443	0.936	0.434	0.898	0.112	0.110	0.673	0.748	0.690	0.558	0.446	0.259	0.671	0.554	1.056	1.548	0.554	1.079	1.937	1.662	1.004	4.081	0.982	0.587	1.887
8030	chr2	26195940	26198690	+	0	NA	Intergenic	Intergenic	9260	NM_001039653	16871	Mm.386765	NM_010711	ENSMUSG00000026934	Lhx3	Lim3|P-LIM|mLIM3|mLim-3	LIM homeobox protein 3	protein-coding	4.069	1.178	0.571	4.048	0.733	0.353	1.819	3.608	2.411	3.327	1.091	0.334	3.004	3.933	2.875	7.455	5.157	6.645	2.933	1.828	1.506	4.394	2.648	2.325	8.985
12772	chr6	134564212	134565713	+	0	NA	intron (NM_008514, intron 1 of 22)	intron (NM_008514, intron 1 of 22)	1951	NM_008514	16974	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	4.029	1.401	0.790	3.439	1.447	1.090	4.328	5.786	2.838	3.057	2.041	3.485	7.107	5.625	5.215	4.890	7.380	3.107	nan	2.349	1.857	3.907	2.924	2.000	nan
5597	chr15	96573416	96575893	+	0	NA	3' UTR (NM_001166456, exon 16 of 16)	3' UTR (NM_001166456, exon 16 of 16)	67308	NM_134086	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	9.413	11.332	4.193	5.588	4.947	2.228	12.106	11.244	3.604	4.576	3.615	2.116	13.275	9.829	9.455	7.555	6.102	6.307	1.209	1.297	0.844	1.763	0.218	0.628	7.848
1450	chr10	76136324	76139670	+	0	NA	Intergenic	Intergenic	-9454	NM_133184	64452	Mm.154797	NM_133184	ENSMUSG00000020229	Slc5a4a	SGLT3-a	solute carrier family 5, member 4a	protein-coding	7.291	0.835	0.428	3.134	5.191	4.023	2.652	2.779	3.273	4.638	1.023	0.540	3.947	7.289	nan	3.981	7.164	3.724	nan	0.862	0.703	0.425	0.590	0.686	4.849
4818	chr14	70602803	70612550	+	0	NA	intron (NM_013514, intron 11 of 14)	intron (NM_013514, intron 11 of 14)	-7841	NM_194345	239170	Mm.247582	NM_194345	ENSMUSG00000022095	Fam160b2	G430067P06Rik|Rai16	family with sequence similarity 160, member B2	protein-coding	9.379	2.897	0.880	6.428	3.215	1.588	7.765	14.201	6.692	9.858	4.400	3.446	6.202	8.246	7.385	10.283	5.206	9.527	2.053	nan	1.434	4.596	1.660	1.193	9.253
3011	chr11	116667598	116670041	+	0	NA	TTS (NM_001163318)	TTS (NM_001163318)	-2841	NR_027821	66293	Mm.432051	NM_025472	ENSMUSG00000020812	1810032O08Rik	-	RIKEN cDNA 1810032O08 gene	ncRNA	6.804	nan	0.899	5.731	3.408	2.053	4.627	nan	3.938	1.903	3.090	1.355	1.846	3.825	1.937	2.254	2.624	1.700	2.284	nan	1.775	2.746	1.830	1.511	3.365
10881	chr4	148116991	148118971	+	0	NA	intron (NM_027426, intron 1 of 6)	intron (NM_027426, intron 1 of 6)	12717	NM_027426	70433	Mm.275288	NM_027426	ENSMUSG00000029005	Draxin	2610109H07Rik|neucrin	dorsal inhibitory axon guidance protein	protein-coding	0.498	nan	0.699	1.146	0.698	0.854	0.814	1.116	0.483	1.083	1.131	0.422	0.329	0.658	0.832	0.982	0.557	0.790	4.531	2.738	3.518	4.400	8.515	9.107	1.314
3250	chr12	27096257	27100135	+	0	NA	intron (NR_045052, intron 1 of 2)	intron (NR_045052, intron 1 of 2)	16799	NR_045052	100504347	Mm.130500	NR_045052		Gm20187	-	predicted gene, 20187	ncRNA	4.249	2.775	0.707	7.957	2.326	1.080	3.229	1.553	2.213	4.800	0.608	0.362	2.946	4.277	7.414	5.376	3.536	8.590	2.313	1.334	0.969	3.052	1.271	1.735	15.850
3098	chr11	119981395	119985186	+	0	NA	intron (NM_001037754, intron 6 of 13)	B4|SINE|B4	-31477	NR_037225	100526518		NR_037225	ENSMUSG00000105524	Mir3065	mir-3065|mmu-mir-3065	microRNA 3065	ncRNA	2.826	nan	0.205	1.843	2.613	2.324	5.753	6.671	4.250	6.752	1.083	0.596	6.015	6.933	3.746	4.025	2.801	nan	0.687	nan	1.175	3.737	0.699	0.364	5.156
2411	chr11	70685397	70687180	+	0	NA	intron (NM_178116, intron 2 of 22)	intron (NM_178116, intron 2 of 22)	1817	NM_001190376	216874	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	2.717	0.896	0.964	2.327	3.261	1.359	2.352	2.184	3.163	2.737	1.877	3.196	2.667	4.643	2.607	1.807	1.640	2.764	1.445	1.510	1.169	1.526	nan	0.736	nan
13924	chr7	150553006	150555355	+	0	NA	Intergenic	Intergenic	5239345	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	4.373	1.470	1.495	3.820	5.419	3.546	3.634	6.540	3.277	3.646	1.373	2.220	2.715	6.238	3.151	2.625	5.077	4.217	1.178	1.602	1.640	1.136	nan	0.912	nan
3905	chr13	28509643	28511825	+	0	NA	intron (NR_045053, intron 7 of 8)	intron (NR_045053, intron 7 of 8)	200139	NR_105787	102466635		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	3.971	3.009	1.552	2.037	1.779	1.781	2.329	1.378	2.082	3.188	2.452	0.857	1.624	2.154	2.109	1.924	1.643	1.938	2.761	3.075	2.226	2.233	4.145	2.422	2.756
1129	chr10	19288706	19291915	+	0	NA	Intergenic	MTA_Mm-int|LTR|ERVL-MaLR	-66229	NM_053008	94222	Mm.156946	NM_053008	ENSMUSG00000045591	Olig3	Bhlhb7|bHLHe20|oligo3	oligodendrocyte transcription factor 3	protein-coding	7.305	3.554	1.910	3.563	2.170	1.384	3.480	5.195	nan	4.604	8.512	2.906	6.831	4.650	3.929	4.996	5.154	4.927	1.239	1.120	0.647	0.870	0.646	0.504	4.316
1143	chr10	19823204	19826466	+	0	NA	Intergenic	Intergenic	26624	NM_029529	76157	Mm.74324	NM_029529	ENSMUSG00000050473	Slc35d3	6230421J19Rik|Frcl1	solute carrier family 35, member D3	protein-coding	9.455	3.102	1.162	6.533	4.487	2.072	8.293	9.895	8.152	8.586	6.691	5.628	9.505	12.163	10.891	11.213	8.663	7.955	2.554	1.982	1.211	3.842	1.808	1.498	9.977
7178	chr18	38359044	38360981	+	0	NA	Intergenic	Intergenic	-21019	NM_011937	26384	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	3.916	0.694	0.266	2.830	1.138	1.859	5.627	6.925	2.974	2.303	6.936	2.734	4.200	5.107	4.601	4.207	2.991	4.808	1.135	1.107	1.098	1.552	0.701	0.810	4.832
6964	chr17	89012379	89015429	+	0	NA	intron (NM_013523, intron 4 of 9)	intron (NM_013523, intron 4 of 9)	186771	NM_013523	14309	Mm.57155	NM_013523	ENSMUSG00000032937	Fshr	-	follicle stimulating hormone receptor	protein-coding	6.227	1.089	0.583	2.489	1.349	0.697	7.182	6.112	nan	3.599	1.226	1.242	4.607	6.933	5.304	6.888	6.116	4.181	0.464	0.798	0.522	0.609	0.424	0.442	6.009
2848	chr11	103107029	103111995	+	0	NA	intron (NM_025988, intron 9 of 9)	B3A|SINE|B2	-6813	NM_138753	192231	Mm.8763	NM_138753	ENSMUSG00000048878	Hexim1	7330426E13Rik|CLP-1|Clp1|HIS1	hexamethylene bis-acetamide inducible 1	protein-coding	6.218	6.021	2.710	nan	3.121	1.832	3.382	4.786	4.870	5.699	4.768	2.912	3.984	7.411	5.803	5.904	3.712	nan	3.434	2.074	1.479	nan	1.858	1.345	6.833
6802	chr17	66856773	66860854	+	0	NA	intron (NM_008984, intron 14 of 30)	intron (NM_008984, intron 14 of 30)	167422	NR_049205	100885844		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	2.189	1.045	0.408	2.083	4.757	4.076	3.450	2.305	nan	1.887	2.522	1.876	2.083	3.426	2.340	2.513	2.046	3.205	1.616	0.921	0.948	0.908	1.394	1.191	3.002
1961	chr11	8366365	8369333	+	0	NA	Intergenic	L1_Mus3|LINE|L1	296686	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	3.892	1.228	0.314	6.410	1.840	0.826	4.827	3.223	3.561	4.911	7.122	3.190	3.133	3.879	3.463	5.541	2.384	5.195	2.083	nan	0.864	3.070	1.896	1.359	4.990
386	chr1	88124972	88133795	+	0	NA	intron (NM_201410, intron 2 of 5)	(TC)n|Simple_repeat|Simple_repeat	-5426	NM_145079	94284	Mm.300095	NM_145079	ENSMUSG00000054545	Ugt1a6a	UDPGT|UDPGT 1-6|UGT1-06|UGT1.6|Ugt1a6|Ugt1a7	UDP glucuronosyltransferase 1 family, polypeptide A6A	protein-coding	8.854	4.108	2.935	3.075	5.407	4.155	6.321	4.110	6.366	8.209	3.037	2.109	8.519	8.860	7.604	14.419	7.713	7.205	0.874	1.313	1.326	nan	0.731	0.761	6.954
6256	chr16	95511058	95514173	+	0	NA	intron (NM_001302152, intron 3 of 10)	L1Md_A|LINE|L1	17750	NM_001302179	13876	Mm.164531	NM_133659	ENSMUSG00000040732	Erg	D030036I24Rik	avian erythroblastosis virus E-26 (v-ets) oncogene related	protein-coding	5.504	1.216	0.758	2.908	4.153	1.277	3.793	4.689	nan	4.130	2.250	0.903	3.877	8.945	nan	5.010	4.278	nan	nan	1.147	0.584	1.131	1.135	0.597	5.264
13831	chr7	139967051	139970927	+	0	NA	Intergenic	Intergenic	9766	NM_001347614	381933	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	4.931	3.337	0.976	5.738	3.598	1.766	1.529	4.423	2.998	3.399	1.628	1.009	1.870	3.368	2.743	4.643	2.188	5.898	0.734	0.967	0.387	0.844	0.518	0.417	5.729
11302	chr5	66501892	66508513	+	0	NA	intron (NM_001310626, intron 2 of 15)	intron (NM_001310626, intron 2 of 15)	113615	NM_009686	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	6.802	1.496	0.841	5.501	5.634	3.436	7.269	6.729	6.083	7.526	2.703	2.153	7.751	9.952	9.310	9.417	6.499	7.688	1.086	0.901	1.020	nan	1.118	1.166	7.169
1457	chr10	76688022	76690433	+	0	NA	Intergenic	Lx3C|LINE|L1	36817	NM_009933	12833	Mm.2509	NM_009933	ENSMUSG00000001119	Col6a1	AI747156|Col6a-1	collagen, type VI, alpha 1	protein-coding	5.377	0.922	0.592	nan	1.299	0.586	5.852	3.309	3.225	2.636	3.776	1.181	4.773	5.997	6.708	6.429	5.603	2.425	nan	1.063	0.628	3.202	1.327	1.370	10.401
1261	chr10	43297012	43302371	+	0	NA	intron (NM_027772, intron 2 of 7)	intron (NM_027772, intron 2 of 7)	78205	NM_001168289	71365	Mm.490430	NM_027772	ENSMUSG00000038240	Pdss2	5430420P03Rik|Gm60|Plmp|kd|mDLP1	prenyl (solanesyl) diphosphate synthase, subunit 2	protein-coding	4.653	11.092	4.413	4.404	0.759	0.569	5.689	6.931	3.578	3.553	5.632	4.410	3.906	3.141	6.321	6.235	3.209	3.705	nan	3.819	3.594	7.564	4.592	3.592	7.543
15869	chrX	163469974	163471701	+	0	NA	Intergenic	L1Md_F3|LINE|L1	78899	NM_008177	14829	Mm.4687	NM_008177	ENSMUSG00000031364	Grpr	GRP-R	gastrin releasing peptide receptor	protein-coding	4.679	1.952	0.932	3.411	3.956	1.738	3.651	7.945	4.973	5.168	3.335	1.507	5.389	4.895	3.852	5.368	4.388	5.473	0.873	0.826	0.243	0.654	0.645	0.436	4.544
5155	chr15	39774402	39775994	+	0	NA	intron (NM_022722, intron 9 of 9)	ORR1C2|LTR|ERVL-MaLR	-21847	NR_045788	100503072	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	OTTMUSG00000033244	predicted gene 16291	ncRNA	7.022	4.565	0.800	6.986	3.195	1.511	5.569	8.675	3.823	11.450	1.966	2.077	6.741	5.707	8.699	7.733	4.481	8.119	4.163	1.471	1.703	6.214	2.123	3.211	15.608
14912	chr9	21727400	21732545	+	0	NA	intron (NM_001252659, intron 1 of 17)	L1_Mur2|LINE|L1	6396	NM_010700	16835	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	6.869	2.911	1.284	5.913	4.153	3.247	5.169	8.186	5.402	5.067	6.829	5.052	5.595	9.231	5.982	6.835	4.898	5.428	2.714	2.543	1.810	2.682	3.091	2.021	7.105
13734	chr7	132900493	132902520	+	0	NA	Intergenic	Intergenic	42281	NM_198017	109359	Mm.274824	NM_198017	ENSMUSG00000030965	Fam175b	AA589499|AI853413|Abro1|C430003P19Rik	family with sequence similarity 175, member B	protein-coding	3.146	0.662	0.389	2.649	1.561	1.002	1.642	3.287	1.139	1.110	1.137	0.535	1.811	4.117	nan	1.923	1.812	2.799	1.532	0.852	1.073	1.260	1.297	0.817	3.051
11248	chr5	54388619	54391850	+	0	NA	Intergenic	MIRb|SINE|MIR	40242	NR_038045	330086	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13|ENSMUSG00000072936	predicted gene 10440	ncRNA	6.598	8.349	2.418	10.798	2.822	1.973	5.790	6.593	5.601	9.890	5.345	4.257	6.594	7.560	9.718	9.342	5.548	9.093	5.405	2.390	2.235	6.309	3.123	3.866	10.067
11843	chr5	137788952	137794342	+	0	NA	intron (NM_001005426, intron 1 of 16)	B2_Mm2|SINE|B2	3845	NM_001005426	381678	Mm.332765	NM_001005426	ENSMUSG00000037108	Zcwpw1	Gm1053	zinc finger, CW type with PWWP domain 1	protein-coding	5.647	1.629	0.609	6.358	2.415	1.414	8.387	5.867	3.408	6.797	3.672	2.442	5.245	8.168	7.323	7.043	5.199	5.993	0.789	0.957	0.876	0.597	nan	1.419	7.322
11318	chr5	67103874	67105560	+	0	NA	Intergenic	Intergenic	-5591	NM_008888	18935	Mm.62505	NM_008888	ENSMUSG00000012520	Phox2b	Dilp1|NBPhox|Pmx2b|Px2b	paired-like homeobox 2b	protein-coding	4.077	0.361	0.697	4.197	3.498	2.395	2.289	0.666	1.985	3.691	0.252	0.554	1.360	4.449	1.557	2.524	1.880	3.780	0.597	0.937	0.607	nan	1.203	1.390	4.536
2970	chr11	114656007	114657214	+	0	NA	intron (NR_037269, intron 2 of 4)	intron (NR_037269, intron 2 of 4)	-11933	NM_023372	67671	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0.891	nan	0.794	0.741	0.327	0.505	nan	nan	0.516	nan	0.374	0.561	0.227	0.605	0.763	0.969	0.592	nan	5.825	4.961	4.729	6.613	5.517	5.572	0.692
4467	chr14	9261916	9264131	+	0	NA	Intergenic	L1_Mus2|LINE|L1	596633	NR_045968	74859	Mm.84041	NR_045968	ENSMUSG00000097898	4930455B14Rik	1700027C12Rik	RIKEN cDNA 4930455B14 gene	ncRNA	2.528	1.163	0.934	1.582	0.462	0.168	1.819	4.155	2.137	1.876	4.918	3.689	3.117	1.914	3.200	2.606	1.656	3.309	0.570	0.539	0.111	0.583	0.173	0.192	3.293
11328	chr5	68295076	68297412	+	0	NA	Intergenic	Intergenic	264409	NM_001018019	433899	Mm.332422	NM_001018019	ENSMUSG00000068082	Grxcr1	Tg(Eno2-Gabrb3)0370Brll|pi|tde	glutaredoxin, cysteine rich 1	protein-coding	6.391	0.455	0.286	3.900	3.847	2.590	8.554	2.003	5.877	6.663	1.017	1.121	6.395	5.084	3.500	5.142	7.055	7.007	1.000	1.470	1.184	nan	1.910	1.426	4.122
161	chr1	51904539	51907559	+	0	NA	intron (NM_001290982, intron 1 of 28)	intron (NM_001290982, intron 1 of 28)	9929	NM_001290982	17912	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	8.705	0.643	0.526	3.770	3.253	1.268	5.726	5.990	5.315	5.163	6.457	4.148	8.620	6.855	7.416	10.996	6.659	7.826	4.291	0.914	0.468	2.139	3.276	2.058	4.593
7881	chr19	53976622	53980672	+	0	NA	intron (NM_019658, intron 1 of 8)	L1_Mur3|LINE|L1	33771	NM_019658	56392	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	4.566	9.669	3.293	5.143	2.330	0.929	8.258	8.698	3.741	4.853	4.749	4.147	1.949	3.877	5.337	5.722	3.250	3.411	3.700	2.775	1.851	4.170	5.095	4.525	nan
11548	chr5	110527620	110530882	+	0	NA	Intergenic	Intergenic	14328	NR_102290	231603	Mm.22836	NM_173766	ENSMUSG00000048215	A630023P12Rik	-	RIKEN cDNA A630023P12 gene	ncRNA	2.677	2.019	0.645	2.656	1.176	0.865	4.139	2.137	1.561	2.567	1.955	0.377	2.915	4.573	5.065	4.917	3.388	2.819	nan	0.516	1.065	1.276	1.107	1.266	5.826
11340	chr5	73199297	73208921	+	0	NA	intron (NM_028194, intron 2 of 62)	intron (NM_028194, intron 2 of 62)	52509	NM_028194	72313	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	1.687	10.085	6.141	1.044	0.677	0.381	0.892	0.724	1.211	1.093	0.710	0.623	0.575	0.981	1.063	nan	1.075	nan	1.060	0.986	0.704	0.604	0.668	0.494	1.043
10080	chr4	49634393	49635865	+	0	NA	intron (NM_182999, intron 3 of 20)	L2|LINE|L2	3069	NM_182999	109331	Mm.24765	NM_182999	ENSMUSG00000028309	Rnf20	4833430L21Rik|AW540162|C79397|mKIAA4116	ring finger protein 20	protein-coding	2.723	nan	0.039	2.560	0.752	0.514	0.619	2.524	3.979	3.690	1.153	0.826	4.182	4.371	4.187	5.505	2.222	nan	0.473	0.178	0.244	nan	0.236	0.261	4.162
8490	chr2	102814346	102816990	+	0	NA	intron (NM_001039150, intron 13 of 13)	intron (NM_001039150, intron 13 of 13)	85997	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	8.281	1.652	1.220	4.271	2.346	1.138	4.303	5.614	5.830	6.577	1.694	1.619	8.284	5.948	7.297	8.898	8.329	6.934	1.927	1.405	0.797	0.945	1.251	0.733	7.555
6168	chr16	85128290	85135938	+	0	NA	intron (NM_007471, intron 1 of 15)	intron (NM_007471, intron 1 of 15)	41593	NM_001198825	11820	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	7.131	nan	0.458	4.555	4.851	2.275	5.356	7.655	4.469	3.903	4.488	2.412	6.409	7.524	5.865	7.110	5.580	6.806	1.430	1.312	0.878	nan	1.329	0.838	5.624
15333	chr9	77854778	77859300	+	0	NA	Intergenic	Intergenic	-60326	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	4.967	1.331	0.728	3.048	2.558	1.475	4.220	6.081	6.066	5.739	1.835	1.260	5.863	4.752	5.722	6.925	4.399	7.681	0.571	nan	0.833	0.439	0.464	0.471	nan
13388	chr7	88056554	88060179	+	0	NA	intron (NM_001143834, intron 8 of 10)	intron (NM_001143834, intron 8 of 10)	-219719	NM_009982	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	4.734	0.956	0.402	1.915	2.882	1.806	6.198	8.494	nan	3.423	6.148	3.666	3.480	8.237	4.479	4.046	nan	3.850	2.070	0.616	0.358	nan	1.147	0.837	1.599
13134	chr7	35895248	35921799	+	0	NA	Intergenic	B3|SINE|B2	-105534	NM_177739	668501	Mm.286296	NM_177739	ENSMUSG00000044452	Zfp507	1810022O10Rik|A230056M16Rik|AL024009|AU021817|BB105092|Gm480|Znf507|mKIAA1084	zinc finger protein 507	protein-coding	6.664	1.433	0.663	5.842	3.705	2.220	10.330	11.891	5.429	9.100	3.062	2.171	11.117	12.589	9.382	9.118	7.259	8.323	2.122	0.996	1.138	1.809	1.904	1.807	12.425
2318	chr11	62927299	62929676	+	0	NA	Intergenic	B3|SINE|B2	-22706	NM_025496	66338	Mm.46166	NM_025496	ENSMUSG00000042200	Cdrt4	1700019I23Rik	CMT1A duplicated region transcript 4	protein-coding	4.012	0.780	0.246	3.356	3.100	0.819	3.557	2.604	3.090	4.066	2.798	0.820	4.144	5.683	3.097	3.158	2.582	5.136	nan	0.816	0.053	1.039	0.494	0.291	4.196
14724	chr8	124966447	124970000	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-18969	NM_053207	112405	Mm.140619	NM_053207	ENSMUSG00000031987	Egln1	AI503754|C1orf12|HIF-PH2|HPH-2|Hif-p4h-2|ORF13|Phd2|SM-20	egl-9 family hypoxia-inducible factor 1	protein-coding	8.787	5.534	1.910	nan	3.297	2.006	5.589	nan	5.136	6.248	4.751	3.248	7.545	8.496	7.012	9.347	8.197	6.094	nan	4.513	4.131	6.780	4.065	nan	10.624
15860	chrX	160577342	160579886	+	0	NA	exon (NM_001177878, exon 26 of 33)	exon (NM_001177878, exon 26 of 33)	76180	NM_001177878	110094	Mm.350712	NM_172783	ENSMUSG00000031295	Phka2	6330505C01Rik|D330034O08|Phk	phosphorylase kinase alpha 2	protein-coding	2.669	0.180	0.207	2.116	2.747	2.070	2.808	4.123	2.699	2.659	0.551	0.823	3.932	3.824	3.516	3.710	3.549	3.489	0.659	0.697	0.482	0.657	0.408	0.389	2.119
14805	chr8	129076856	129081717	+	0	NA	intron (NM_001168369, intron 2 of 14)	B1_Mus1|SINE|Alu	12152	NM_001168369	75453	Mm.286964	NM_029292	ENSMUSG00000056018	Ccdc7b	1700008F21Rik	coiled-coil domain containing 7B	protein-coding	3.757	nan	0.673	nan	5.048	2.210	nan	4.903	3.621	4.615	3.221	2.215	4.387	7.555	nan	6.767	3.690	5.736	nan	0.646	0.454	nan	0.903	nan	nan
9140	chr3	9703901	9705547	+	0	NA	exon (NM_053182, exon 4 of 8)	exon (NM_053182, exon 4 of 8)	-94639	NM_133218	170753	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	2.266	2.662	0.763	2.709	0.689	0.455	5.773	4.397	2.805	2.101	0.976	1.199	5.116	3.904	6.298	5.001	2.403	4.592	1.700	0.264	0.074	1.336	0.799	0.384	5.222
4526	chr14	22641300	22643902	+	0	NA	intron (NM_028275, intron 5 of 6)	intron (NM_028275, intron 5 of 6)	-99803	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	6.586	1.907	0.849	5.221	3.690	3.273	6.081	8.010	6.048	4.260	4.424	3.484	3.776	4.448	6.509	6.479	4.260	5.718	2.996	1.804	2.142	nan	2.818	3.573	8.461
7395	chr18	75522025	75553150	+	0	NA	intron (NM_201354, intron 7 of 11)	intron (NM_201354, intron 7 of 11)	22942	NR_045879	100038353	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	ENSMUSG00000073534	predicted gene 10532	ncRNA	7.499	nan	2.060	7.529	5.236	2.925	9.627	10.129	5.577	nan	5.143	3.685	9.662	10.597	8.159	8.390	5.742	7.578	3.404	nan	2.211	4.388	2.765	2.559	9.888
11684	chr5	123157228	123159557	+	0	NA	intron (NM_001040398, intron 10 of 16)	intron (NM_001040398, intron 10 of 16)	16199	NM_001040398	208043	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	7.016	10.092	3.007	10.519	4.147	2.694	6.645	6.644	5.438	8.528	4.438	5.301	6.107	8.927	9.348	9.787	4.787	8.528	4.670	2.340	2.491	6.712	2.604	2.928	10.333
15194	chr9	64594125	64596648	+	0	NA	intron (NM_001134399, intron 5 of 24)	intron (NM_001134399, intron 5 of 24)	142370	NM_017382	53869	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	2.797	0.545	0.470	1.183	1.450	1.016	2.676	2.690	2.145	2.630	1.093	0.950	3.607	6.100	nan	2.273	2.332	2.557	nan	0.746	0.494	0.415	0.970	0.427	2.333
12599	chr6	113635319	113643673	+	0	NA	intron (NM_001113553, intron 1 of 11)	intron (NM_001113553, intron 1 of 11)	1029	NM_001113553	108960	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	8.197	1.904	1.003	5.757	8.894	6.048	14.060	11.267	5.453	6.904	4.616	3.192	11.092	13.558	10.688	12.894	9.541	7.291	1.252	1.398	1.416	1.165	nan	0.914	9.340
7415	chr18	80335929	80337432	+	0	NA	intron (NM_001190373, intron 2 of 3)	intron (NM_001190373, intron 2 of 3)	27574	NM_001190373	240444	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	3.396	nan	0.656	1.759	3.104	1.565	1.826	1.880	1.847	1.649	1.596	0.809	2.540	3.293	1.713	2.351	2.122	4.864	2.229	nan	0.913	2.876	1.089	0.899	3.013
15426	chr9	100542290	100545060	+	0	NA	intron (NM_010878, intron 1 of 3)	RSINE1|SINE|B4	2459	NM_010878	17973	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	9.516	13.687	5.484	10.747	5.200	3.335	7.380	8.979	7.171	17.271	9.168	4.167	8.510	10.590	9.537	12.161	6.868	10.538	6.916	3.915	4.178	6.459	5.023	5.092	18.314
6699	chr17	47729988	47735793	+	0	NA	intron (NM_025973, intron 6 of 8)	intron (NM_025973, intron 6 of 8)	-4147	NM_001161722	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	5.767	10.712	4.308	7.732	3.306	1.841	5.013	2.379	3.300	4.459	2.968	1.550	3.412	7.426	5.455	6.989	4.243	5.436	1.938	1.885	2.082	2.571	1.991	1.790	11.074
5051	chr15	10796302	10802926	+	0	NA	Intergenic	Intergenic	-29437	NR_040357	100502601	Mm.399434	NR_040357		Gm19276	-	predicted gene, 19276	ncRNA	5.099	1.728	0.994	3.053	2.854	1.249	4.639	5.980	3.628	3.992	2.749	1.619	6.210	5.437	4.429	4.218	5.226	4.324	0.594	0.759	0.526	0.419	0.407	0.240	3.895
12489	chr6	94149775	94156153	+	0	NA	intron (NR_130996, intron 1 of 1)	intron (NR_130996, intron 1 of 1)	84478	NR_130996	78178	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	5.100	0.419	0.203	2.963	3.055	1.595	7.828	6.295	4.056	4.190	2.945	1.553	7.652	8.910	7.421	9.734	6.959	6.713	nan	nan	0.518	1.236	0.511	0.332	5.880
8974	chr2	165144291	165152979	+	0	NA	intron (NM_174988, intron 4 of 11)	intron (NM_174988, intron 4 of 11)	-57885	NR_033448	72211	Mm.482899	NR_033448	ENSMUSG00000078935	1700025C18Rik	-	RIKEN cDNA 1700025C18 gene	ncRNA	8.548	4.402	1.611	7.231	5.021	2.988	6.099	8.489	4.105	6.549	4.560	2.472	7.433	8.981	7.866	10.568	6.595	7.988	nan	2.146	2.004	3.240	2.755	2.272	11.388
11270	chr5	65193203	65206518	+	0	NA	intron (NM_153391, intron 1 of 36)	intron (NM_153391, intron 1 of 36)	164	NM_153391	213081	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	9.317	5.814	1.564	10.601	5.433	2.295	8.497	8.483	7.229	10.258	8.668	5.256	7.925	11.249	9.092	9.987	6.352	9.856	5.536	2.875	2.228	nan	3.418	3.244	10.686
9766	chr3	121908932	121915459	+	0	NA	Intergenic	Intergenic	-41131	NM_172525	214137	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	2.532	1.107	0.734	1.393	0.890	0.579	2.158	5.013	1.182	nan	6.875	3.451	3.231	1.592	1.816	nan	2.155	2.354	0.938	0.945	0.703	1.092	nan	0.595	nan
3378	chr12	70518644	70521798	+	0	NA	intron (NR_037248, intron 2 of 4)	Lx6|LINE|L1	67067	NM_028339	72736	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	5.236	2.764	1.053	2.182	2.321	0.699	5.056	4.656	3.985	3.564	4.099	3.454	4.834	6.146	6.097	5.747	3.171	4.708	0.962	1.198	0.532	1.014	0.939	0.635	5.394
13322	chr7	80903525	80907860	+	0	NA	promoter-TSS (NM_001291280)	promoter-TSS (NM_001291280)	-630	NM_001291280	68039	Mm.22246	NM_026523	ENSMUSG00000025723	Nmb	3110023K12Rik	neuromedin B	protein-coding	3.460	0.590	0.303	3.269	3.464	1.562	1.931	2.341	3.633	6.653	0.621	0.845	3.576	4.555	2.540	3.144	1.933	5.205	0.903	0.671	0.749	0.671	1.443	0.764	3.544
15280	chr9	71574268	71575551	+	0	NA	intron (NM_001033208, intron 2 of 12)	intron (NM_001033208, intron 2 of 12)	17451	NM_001033208	102371	Mm.27585	NM_001033208	ENSMUSG00000041361	Myzap	AA407270|AV006038|Gcom1|Gm640|Grinl1a7|Myozap	myocardial zonula adherens protein	protein-coding	1.985	0.659	0.208	1.711	0.693	0.271	1.821	2.576	1.644	1.990	0.681	0.498	2.059	2.845	2.199	3.539	1.541	2.579	nan	0.165	0.180	0.466	0.143	0.150	3.299
4034	chr13	42265369	42266985	+	0	NA	Intergenic	Intergenic	-35299	NM_010104	13614	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	2.892	nan	0.892	0.920	1.549	1.287	3.046	5.439	nan	nan	0.499	0.532	2.924	3.918	1.778	nan	2.734	nan	0.569	1.079	1.119	0.520	0.535	0.843	2.073
7467	chr19	3925451	3929780	+	0	NA	intron (NM_026316, intron 1 of 9)	RSINE1|SINE|B4	2101	NM_026316	67689	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	6.055	3.306	1.257	6.428	3.063	1.942	7.018	5.073	nan	3.824	3.227	1.635	4.029	6.089	4.897	5.656	3.695	4.765	1.055	1.322	0.983	1.776	1.148	1.233	9.276
10590	chr4	130521616	130524054	+	0	NA	Intergenic	Intergenic	51201	NM_025998	67149	Mm.423029	NM_025998	ENSMUSG00000078532	Nkain1	2610200G18Rik|2810426C15Rik	Na+/K+ transporting ATPase interacting 1	protein-coding	0.414	0.626	0.387	0.408	0.234	0.035	0.344	0.321	0.183	0.160	0.333	0.125	0.066	0.194	nan	0.422	0.420	0.219	6.917	1.701	1.464	3.835	6.216	5.517	0.385
4454	chr14	8764824	8766826	+	0	NA	Intergenic	L1_Mur1|LINE|L1	99435	NR_045968	74859	Mm.84041	NR_045968	ENSMUSG00000097898	4930455B14Rik	1700027C12Rik	RIKEN cDNA 4930455B14 gene	ncRNA	0.939	1.247	0.618	1.065	1.218	0.362	2.032	1.384	3.097	2.404	5.606	3.200	3.082	4.371	3.297	2.161	0.435	2.537	0.586	0.238	0.061	0.836	0.325	0.143	1.625
9942	chr4	11821407	11822474	+	0	NA	Intergenic	Intergenic	63783	NM_019753	12557	Mm.33402	NM_019753	ENSMUSG00000028217	Cdh17	HPT-1|HPT-1/LI	cadherin 17	protein-coding	2.192	0.648	1.208	1.414	2.081	1.211	1.973	1.782	2.454	3.680	1.123	1.182	1.334	3.106	2.513	2.088	2.105	3.339	1.136	nan	0.689	1.008	1.187	0.669	0.664
5282	chr15	68222701	68227456	+	0	NA	intron (NM_001145888, intron 1 of 15)	intron (NM_001145888, intron 1 of 15)	33778	NM_001145888	380993	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	4.830	0.615	0.247	1.876	1.121	0.311	4.436	3.195	2.535	2.384	0.420	0.230	5.112	2.804	4.214	4.511	5.012	5.528	0.515	0.541	0.232	0.793	0.476	0.149	3.488
5563	chr15	89190606	89194706	+	0	NA	intron (NM_027081, intron 1 of 19)	intron (NM_027081, intron 1 of 19)	3818	NM_027081	69440	Mm.482128	NM_027081	ENSMUSG00000015377	Dennd6b	1700027J05Rik|AI414881|Fam116b	DENN/MADD domain containing 6B	protein-coding	5.611	0.762	0.473	2.411	1.645	1.218	7.395	8.243	nan	1.477	0.609	0.502	6.685	5.473	5.109	5.483	5.920	5.190	nan	0.693	0.718	nan	0.591	0.576	6.331
6884	chr17	80456115	80462338	+	0	NA	intron (NM_009231, intron 2 of 21)	ID_B1|SINE|B4	21227	NM_009231	20662	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	son of sevenless homolog 1 (Drosophila)	protein-coding	8.679	5.276	2.158	8.240	4.715	3.623	9.711	5.689	nan	11.319	3.707	3.043	6.957	8.360	8.887	9.768	7.953	8.700	4.142	2.245	3.001	4.366	2.466	3.754	12.353
7631	chr19	21703360	21705817	+	0	NA	Intergenic	L1VL4|LINE|L1	51279	NM_146096	226016	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding	2.070	10.597	6.843	2.506	1.015	0.468	0.972	1.311	2.304	1.753	0.703	1.231	1.165	0.969	1.293	1.899	1.930	2.721	1.621	1.474	1.073	2.469	1.117	1.603	1.507
10315	chr4	101025063	101030990	+	0	NA	Intergenic	L1MB4|LINE|L1	-41012	NM_183024	242570	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	7.071	nan	2.507	7.760	6.326	4.068	3.072	5.622	nan	8.217	2.049	1.678	2.236	5.842	nan	5.802	1.980	5.725	5.118	4.637	4.695	nan	5.613	5.571	8.109
13217	chr7	56041705	56045938	+	0	NA	Intergenic	Intergenic	-6334	NM_010418	15204	Mm.20929	NM_010418	ENSMUSG00000030451	Herc2	D15F32S1h|D7H15F32S1|D7H15F37S1|jdf2|mKIAA0393|rjs	HECT and RLD domain containing E3 ubiquitin protein ligase 2	protein-coding	nan	3.177	0.814	2.393	1.034	0.499	1.807	4.600	2.378	2.674	1.693	2.075	2.645	1.897	3.267	nan	1.811	3.999	3.961	1.427	1.072	4.741	2.689	1.896	3.161
12926	chr7	16606856	16609408	+	0	NA	intron (NM_172739, intron 1 of 6)	intron (NM_172739, intron 1 of 6)	-5692	NR_136928	102634559	Mm.421602	NR_136928	ENSMUSG00000100583	Gm29443	-	predicted gene 29443	ncRNA	3.144	3.853	3.714	2.380	2.847	1.383	2.208	5.080	2.200	1.931	1.334	1.882	1.825	1.826	1.891	2.003	1.885	3.117	2.416	1.815	2.749	2.413	2.429	2.185	2.099
3153	chr12	3853527	3857310	+	0	NA	intron (NM_007872, intron 3 of 22)	intron (NM_007872, intron 3 of 22)	6826	NR_045884	100038522	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	ENSMUSG00000073242|Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	6.630	7.366	3.433	4.969	4.446	3.406	5.048	3.441	3.569	4.606	1.819	2.024	7.159	7.572	4.196	5.315	5.400	4.908	2.132	2.565	1.925	2.326	1.528	1.506	7.042
4787	chr14	66471777	66480991	+	0	NA	Intergenic	IMPB_01|Satellite|Satellite	132088	NM_019675	56471	Mm.35474	NM_019675	ENSMUSG00000022044	Stmn4	Lagl|R75359|RB3	stathmin-like 4	protein-coding	3.302	0.784	0.365	1.979	2.686	1.393	6.246	7.362	4.006	3.471	1.774	3.543	5.249	7.281	6.909	6.132	3.504	4.195	0.767	nan	0.666	1.255	0.703	0.647	5.785
911	chr1	179370571	179377762	+	0	NA	intron (NM_027188, intron 5 of 11)	intron (NM_027188, intron 5 of 11)	143837	NM_027188	69726	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	6.444	3.535	1.175	4.745	4.499	2.402	5.062	4.340	4.365	8.087	3.494	2.488	5.181	nan	5.605	6.978	3.963	6.681	7.785	4.693	3.524	9.317	3.580	4.198	6.611
8589	chr2	119933575	119935197	+	0	NA	intron (NM_001164274, intron 12 of 22)	intron (NM_001164274, intron 12 of 22)	37158	NM_013720	29808	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	3.231	1.731	0.879	4.354	0.885	0.094	0.966	0.995	1.781	1.777	0.972	0.518	nan	1.691	1.279	2.066	1.009	3.448	0.740	1.143	0.531	1.017	0.380	0.235	2.301
11897	chr5	140993342	140995065	+	0	NA	intron (NM_175362, intron 1 of 24)	PB1D10|SINE|Alu	6393	NM_175362	108723	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	2.586	2.701	1.034	3.087	2.861	2.138	4.516	4.301	2.417	3.337	2.591	1.142	4.154	5.972	3.752	3.708	1.744	4.867	1.054	0.553	1.043	0.943	nan	1.614	3.222
6253	chr16	95450103	95476130	+	0	NA	intron (NM_001302152, intron 3 of 10)	intron (NM_001302152, intron 3 of 10)	-3768	NM_001302153	13876	Mm.164531	NM_133659	ENSMUSG00000040732	Erg	D030036I24Rik	avian erythroblastosis virus E-26 (v-ets) oncogene related	protein-coding	7.926	0.957	0.683	4.947	5.075	2.839	4.735	5.445	nan	9.674	3.180	1.023	8.654	9.822	nan	7.535	6.105	nan	nan	1.313	1.022	2.136	0.889	0.800	5.911
12713	chr6	125982584	125985062	+	0	NA	intron (NM_153589, intron 20 of 25)	intron (NM_153589, intron 20 of 25)	181137	NM_001164035	18205	Mm.267570	NM_008742	ENSMUSG00000049107	Ntf3	AI316846|AI835689|HDNF|NGF-2|Nt3|Ntf-3	neurotrophin 3	protein-coding	6.224	nan	0.503	4.962	4.374	1.904	5.838	7.023	5.229	5.885	2.061	2.950	8.430	7.819	5.569	8.041	6.047	6.856	0.480	1.196	0.453	1.379	0.496	0.350	5.124
7523	chr19	7407808	7417025	+	0	NA	Intergenic	Intergenic	-5209	NM_175381	108899	Mm.386838	NM_175381	ENSMUSG00000053080	2700081O15Rik	AI255177|AI848741|AW742297	RIKEN cDNA 2700081O15 gene	protein-coding	7.365	5.059	2.447	4.765	6.618	3.873	8.702	9.915	nan	6.017	6.313	3.626	4.727	8.078	5.840	5.964	7.710	6.063	2.537	4.241	2.467	4.341	5.649	4.097	8.802
4079	chr13	46935742	46938121	+	0	NA	Intergenic	(CACCAT)n|Simple_repeat|Simple_repeat	-7213	NM_010617	16553	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	2.647	1.075	0.427	nan	1.158	0.444	1.586	2.296	1.952	1.975	5.450	2.147	2.417	2.778	2.951	2.163	0.908	4.278	1.298	nan	0.293	1.919	0.643	0.282	3.408
2965	chr11	113526740	113527852	+	0	NA	intron (NM_001166503, intron 3 of 9)	intron (NM_001166503, intron 3 of 9)	38519	NM_001166503	69806	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	2.519	8.511	6.740	2.649	1.492	0.579	nan	2.747	1.841	1.620	0.766	1.496	1.387	1.373	1.679	1.643	1.593	2.696	3.735	nan	1.302	2.014	1.465	1.592	1.194
8871	chr2	156149665	156150891	+	0	NA	intron (NM_133242, intron 14 of 16)	intron (NM_133242, intron 14 of 16)	6045	NM_025946	67067	Mm.371623	NM_025946	ENSMUSG00000067847	Romo1	2010100O12Rik|AI853864	reactive oxygen species modulator 1	protein-coding	3.212	2.385	1.400	2.705	2.530	0.900	3.966	5.100	nan	1.774	1.330	0.443	2.605	4.278	2.592	3.913	3.371	1.723	nan	0.533	1.447	0.838	1.029	0.638	5.656
9794	chr3	126571829	126574550	+	0	NA	Intergenic	Intergenic	-23762	NM_001293663	108058	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	3.704	0.652	0.244	1.995	3.342	1.857	4.509	nan	3.873	3.516	3.213	1.641	4.530	5.153	4.721	4.143	nan	5.061	2.977	0.871	0.645	2.251	1.616	1.008	2.946
7829	chr19	46550606	46563235	+	0	NA	intron (NM_019718, intron 2 of 5)	URR1A|DNA|hAT-Charlie	16165	NM_019718	56350	Mm.22085	NM_019718	ENSMUSG00000025035	Arl3	-	ADP-ribosylation factor-like 3	protein-coding	7.680	3.415	1.077	8.488	4.895	2.575	9.435	9.534	5.544	7.048	8.661	4.049	6.034	9.534	8.493	9.290	6.123	9.985	1.602	1.572	1.300	2.686	1.593	1.113	13.840
7909	chr19	58922927	58926552	+	0	NA	intron (NM_001327998, intron 2 of 12)	intron (NM_001327998, intron 2 of 12)	-12980	NR_037247	100526480		NR_037247	ENSMUSG00000092813	Mir3086	mir-3086|mmu-mir-3086	microRNA 3086	ncRNA	5.818	nan	1.934	2.224	1.531	0.915	5.230	7.605	2.431	3.380	0.622	0.416	3.517	5.530	nan	5.863	6.167	4.236	0.377	0.405	0.440	0.598	0.205	0.157	4.491
4907	chr14	99444268	99446554	+	0	NA	Intergenic	Intergenic	146720	NM_009769	12224	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding	4.450	9.430	2.374	6.072	1.933	1.259	3.247	5.174	3.685	6.837	4.195	3.454	3.083	4.521	7.131	7.441	2.494	6.129	3.992	1.576	1.469	5.018	4.347	4.722	9.819
8803	chr2	151783891	151789251	+	0	NA	Intergenic	L1MA8|LINE|L1	-35106	NR_138569	75283	Mm.195735	NM_029235		4930556L07Rik	1700020P01Rik|4930593I08Rik	RIKEN cDNA 4930556L07 gene	ncRNA	3.957	2.354	0.958	5.151	5.538	3.626	4.665	5.707	2.512	3.054	1.752	1.230	4.430	4.745	3.835	5.339	3.628	4.886	nan	0.989	1.147	1.776	0.958	0.752	5.173
5058	chr15	12161147	12163222	+	0	NA	exon (NM_011767, exon 14 of 20)	exon (NM_011767, exon 14 of 20)	-9308	NR_035443	100316684		NR_035443	ENSMUSG00000084592	Mir1898	Mirn1898|mmu-mir-1898	microRNA 1898	ncRNA	5.305	2.204	0.847	4.080	1.836	0.940	4.602	9.835	3.901	5.024	2.118	1.235	4.737	5.867	5.179	4.889	4.035	6.842	2.121	0.781	0.878	1.898	1.508	0.664	6.958
9267	chr3	50690773	50699174	+	0	NA	Intergenic	Intergenic	-251360	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.373	0.581	0.238	0.193	0.144	0.103	0.462	0.495	0.287	0.285	0.297	0.241	0.211	0.258	0.420	0.439	0.389	0.420	1.782	1.220	0.536	4.566	1.182	0.781	0.412
7130	chr18	35635754	35638644	+	0	NA	Intergenic	MMETn-int|LTR|ERVK	-9972	NM_011397	20522	Mm.22702	NM_011397	ENSMUSG00000024354	Slc23a1	D18Ucla2|SVCT1|Slc23a2|YSPL3	solute carrier family 23 (nucleobase transporters), member 1	protein-coding	6.760	0.874	0.834	1.715	1.884	1.036	3.124	5.040	2.328	2.783	7.905	3.289	6.095	4.774	2.550	3.116	3.751	2.794	2.570	2.196	1.126	1.932	2.628	1.751	4.084
7285	chr18	60780766	60794187	+	0	NA	Intergenic	B3|SINE|B2	12880	NM_020600	20044	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	8.454	nan	1.703	nan	4.734	2.435	6.078	5.752	5.160	8.630	3.412	2.304	8.915	8.893	6.092	7.123	5.070	nan	nan	1.400	0.984	nan	1.978	1.274	8.195
7016	chr18	10934092	10938883	+	0	NA	Intergenic	Intergenic	-116023	NM_010258	14465	Mm.329287	NM_010258	ENSMUSG00000005836	Gata6	AA410133|GATA-6	GATA binding protein 6	protein-coding	nan	0.585	0.351	1.562	4.582	2.137	7.799	8.684	3.553	3.789	0.940	1.297	nan	7.889	6.508	6.376	5.477	5.920	1.499	1.491	0.708	1.262	2.569	1.748	6.479
7609	chr19	16399612	16405634	+	0	NA	Intergenic	Intergenic	-33044	NM_008137	14675	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	5.248	7.831	4.982	4.521	4.256	1.438	5.672	10.048	5.128	4.728	2.387	3.013	4.814	6.965	6.757	6.275	6.239	7.091	2.917	2.996	1.293	7.067	2.732	1.635	4.197
14337	chr8	74735891	74738181	+	0	NA	Intergenic	Intergenic	-136138	NM_027837	71597	Mm.158735	NM_027837	ENSMUSG00000031621	Isx	9130012O13Rik|Pix-1	intestine specific homeobox	protein-coding	0.921	nan	0.973	1.220	1.429	0.846	nan	1.700	nan	1.003	4.732	2.697	0.874	1.167	0.991	nan	1.300	0.944	4.789	5.723	6.981	4.974	7.173	6.689	nan
12480	chr6	92889762	92894698	+	0	NA	intron (NM_175314, intron 2 of 29)	Lx|LINE|L1	9211	NM_175314	101401	Mm.158235	NM_175314	ENSMUSG00000030022	Adamts9	1810011L16Rik|8430403M15Rik|AW743315|E030027K14Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 9	protein-coding	8.399	2.331	0.739	6.557	5.137	2.215	12.584	9.791	4.023	6.290	0.959	0.905	8.644	10.531	10.476	12.742	10.400	nan	nan	1.747	0.983	1.572	0.975	1.045	11.681
9455	chr3	88753617	88755609	+	0	NA	intron (NM_018804, intron 2 of 3)	PB1D9|SINE|Alu	17986	NM_018804	229521	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	11.555	18.735	8.018	15.255	10.604	7.188	14.540	10.234	7.508	18.745	10.072	5.241	14.381	15.091	12.348	13.220	9.373	12.618	7.632	4.061	5.821	9.234	6.049	8.630	19.181
8841	chr2	154251000	154256966	+	0	NA	Intergenic	Intergenic	-3896	NM_175167	71425	Mm.389341	NM_175167	ENSMUSG00000067998	Bpifb9a	4833413D08Rik|AI413838	BPI fold containing family B, member 9A	protein-coding	nan	1.483	1.390	2.492	2.889	2.119	2.655	3.457	nan	nan	1.896	1.629	nan	nan	2.659	3.153	2.473	2.942	8.051	4.925	5.722	4.524	7.044	6.775	nan
15136	chr9	59117930	59120829	+	0	NA	Intergenic	L1Md_T|LINE|L1	-82938	NM_001042752	18007	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding	4.873	3.735	2.869	4.974	3.557	2.044	2.784	7.128	3.403	5.409	1.159	1.138	3.706	6.353	3.723	3.688	2.652	3.383	4.486	4.192	3.490	4.122	8.514	6.442	2.809
8497	chr2	103121188	103144876	+	0	NA	Intergenic	L1MB3|LINE|L1	59357	NM_019735	56369	Mm.24772	NM_019735	ENSMUSG00000010911	Apip	APIP2|CGI-29|Mmrp19	APAF1 interacting protein	protein-coding	5.121	4.730	2.276	3.697	2.205	1.018	4.499	8.818	4.794	4.592	9.285	4.321	7.218	6.967	6.412	7.541	6.830	6.473	4.630	1.453	0.699	nan	3.682	2.385	8.300
8698	chr2	133320462	133326223	+	0	NA	Intergenic	B3|SINE|B2	-228817	NM_007553	12156	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	4.948	0.566	0.160	3.528	2.532	1.236	4.504	7.252	5.431	5.305	0.778	2.110	9.323	7.469	8.189	10.038	8.786	7.545	1.440	0.743	0.340	1.355	1.722	0.825	7.295
6285	chr16	98183025	98184692	+	0	NA	Intergenic	Intergenic	-101419	NR_015491	320586	Mm.442230	NR_015491		A630089N07Rik	-	RIKEN cDNA A630089N07 gene	ncRNA	9.249	10.963	3.794	10.274	5.959	5.073	8.879	11.940	nan	11.373	6.514	2.622	7.834	9.736	9.125	12.407	7.037	8.292	5.558	3.487	4.351	6.053	4.618	6.212	16.366
8439	chr2	91159131	91165708	+	0	NA	intron (NM_001177720, intron 17 of 34)	intron (NM_001177720, intron 17 of 34)	16902	NM_001177720	228355	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	2.692	0.624	0.409	3.251	1.228	0.773	1.561	2.474	2.444	2.212	0.787	1.136	2.247	2.553	2.227	3.180	2.430	3.474	2.603	2.444	1.483	5.369	2.780	2.135	2.645
12725	chr6	127796741	127808886	+	0	NA	Intergenic	Intergenic	-14670	NR_106092	102466996		NR_106092	ENSMUSG00000104804	Mir7233	mmu-mir-7233	microRNA 7233	ncRNA	3.463	nan	0.304	4.327	4.726	2.338	4.119	nan	6.226	8.549	1.428	0.854	6.273	10.625	5.814	8.463	5.141	5.832	0.555	0.630	0.500	0.955	0.407	0.297	4.545
12389	chr6	86563807	86566209	+	0	NA	TTS (NR_037961)	TTS (NR_037961)	37607	NR_037961	72012	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	2.477	1.705	0.730	3.506	1.753	0.850	3.840	3.475	2.504	3.072	3.696	1.304	4.065	6.176	3.829	4.786	2.791	3.653	nan	1.010	0.371	1.104	0.623	0.117	3.387
11137	chr5	32934719	32936033	+	0	NA	intron (NM_177786, intron 25 of 32)	intron (NM_177786, intron 25 of 32)	71655	NM_001170567	277854	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	1.547	0.629	0.601	nan	2.051	0.974	1.186	0.798	1.441	1.796	0.962	0.683	1.260	2.953	1.186	1.902	2.010	2.430	0.747	0.430	0.264	0.767	0.874	0.833	1.138
10951	chr4	151366689	151378125	+	0	NA	intron (NM_001081557, intron 5 of 23)	intron (NM_001081557, intron 5 of 23)	282837	NM_001308446	105704528	Mm.415128	NM_001308446	ENSMUSG00000078491	Gm13090	OTTMUSG00000010356	predicted gene 13090	protein-coding	3.954	nan	1.256	5.048	5.250	4.302	4.159	4.660	3.427	6.706	2.273	2.227	4.463	7.669	4.214	4.918	2.863	4.739	2.064	0.921	1.728	3.175	1.245	1.753	6.553
4531	chr14	23965980	23969788	+	0	NA	intron (NM_001253366, intron 1 of 29)	intron (NM_001253366, intron 1 of 29)	36321	NM_001253375	16531	Mm.343607	NM_010610	ENSMUSG00000063142	Kcnma1	5730414M22Rik|BKCa|MaxiK|Slo|Slo1|mSlo|mSlo1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding	2.913	0.308	0.267	0.769	0.285	0.195	2.424	6.444	1.334	1.033	5.852	0.860	1.477	1.659	2.400	nan	nan	nan	0.963	0.705	0.184	nan	0.489	0.208	0.975
5568	chr15	91488524	91498059	+	0	NA	intron (NM_001033633, intron 3 of 9)	intron (NM_001033633, intron 3 of 9)	79970	NM_001033633	239606	Mm.360596	NM_001033633	ENSMUSG00000036298	Slc2a13	6530403A04|A630029G22Rik|AI505012|Gm308	solute carrier family 2 (facilitated glucose transporter), member 13	protein-coding	nan	1.820	1.004	nan	3.886	2.328	nan	6.632	nan	9.249	1.831	1.011	10.238	7.611	nan	nan	8.333	nan	nan	0.895	0.548	nan	0.997	0.778	nan
3005	chr11	116391191	116395643	+	0	NA	intron (NM_027258, intron 2 of 18)	IAPEz-int|LTR|ERVK	19615	NM_027258	217340	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	4.517	nan	0.951	8.184	4.684	2.823	3.933	5.946	3.936	9.284	4.827	3.537	6.446	11.012	4.326	3.015	1.592	6.018	0.925	nan	1.066	1.567	0.782	0.406	7.137
9602	chr3	101098419	101099610	+	0	NA	intron (NM_011197, intron 1 of 8)	intron (NM_011197, intron 1 of 8)	11152	NM_011197	19221	Mm.24807	NM_011197	ENSMUSG00000027864	Ptgfrn	4833445A08Rik|AU042434|CD9P-1|FPRP|Trim45	prostaglandin F2 receptor negative regulator	protein-coding	4.499	2.548	1.031	3.140	2.479	2.328	4.107	1.897	3.436	2.823	nan	3.629	3.107	4.148	2.939	nan	3.839	2.457	0.822	1.957	1.273	0.982	0.865	0.868	2.903
956	chr1	182869650	182877493	+	0	NA	intron (NM_144796, intron 4 of 7)	intron (NM_144796, intron 4 of 7)	-81217	NM_016928	53791	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	7.495	10.366	4.072	6.219	3.225	1.451	8.736	8.851	3.847	5.526	9.051	4.199	8.483	nan	6.703	7.307	6.190	6.188	3.965	4.499	3.310	7.953	4.928	4.266	6.677
14822	chr8	129386766	129397116	+	0	NA	Intergenic	Intergenic	128311	NR_144501	102635552		NM_001346808		Gm32856	-	predicted gene, 32856	protein-coding	5.007	nan	6.188	nan	3.932	2.759	nan	3.383	3.432	3.347	3.096	1.861	2.948	4.172	nan	3.749	3.224	3.233	nan	1.987	2.085	nan	1.660	nan	3.606
11194	chr5	37435400	37440563	+	0	NA	Intergenic	MIR3|SINE|MIR	99503	NM_145920	68525	Mm.25506	NM_145920	ENSMUSG00000050248	Evc2	1110017L09Rik|Lbn|limbin	Ellis van Creveld syndrome 2	protein-coding	0.900	10.702	6.084	1.340	0.588	0.401	0.420	1.679	0.982	0.935	0.291	0.776	0.506	0.512	nan	0.786	nan	nan	3.416	2.270	1.540	1.463	4.192	3.526	0.716
3933	chr13	32694130	32695759	+	0	NA	Intergenic	Intergenic	86835	NM_001166030	238564	Mm.60041	NM_001166030	ENSMUSG00000044951	Mylk4	EG238564	myosin light chain kinase family, member 4	protein-coding	1.142	0.370	0.239	0.616	0.332	0.159	0.753	1.767	1.441	0.776	6.684	1.531	1.067	0.514	0.816	1.187	1.087	1.459	0.821	0.501	0.310	0.886	0.401	0.485	0.477
15285	chr9	71731980	71732905	+	0	NA	intron (NM_026599, intron 1 of 18)	intron (NM_026599, intron 1 of 18)	39160	NM_026599	68178	Mm.99961	NM_026599	ENSMUSG00000032232	Cgnl1	4933421H10Rik|9930020M10Rik|AI503810|Jacop	cingulin-like 1	protein-coding	2.986	0.901		1.993	1.839	0.578	1.099	1.829	3.375	4.408	3.186	2.064	2.605	3.627	2.162	2.133	1.951	2.865	nan	1.065	0.196	0.971	0.697	0.967	1.129
4915	chr14	100085235	100087995	+	0	NA	intron (NM_010636, intron 2 of 6)	intron (NM_010636, intron 2 of 6)	63181	NM_010636	16597	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0.782	nan	0.514	0.504	0.582	0.089	1.046	2.327	2.481	0.917	2.749	3.905	1.400	1.711	1.354	1.333	0.738	1.548	1.212	0.511	0.355	1.303	0.692	0.441	nan
15537	chr9	114689797	114691751	+	0	NA	intron (NM_146229, intron 2 of 12)	intron (NM_146229, intron 2 of 12)	1943	NM_146229	235661	Mm.128627	NM_146229	ENSMUSG00000032435	Dync1li1	1110053F02Rik|Dnclic1|LIC-1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding	3.963	16.507	5.711	3.812	1.814	1.299	1.679	1.779	1.852	3.468	2.821	1.057	1.262	2.266	2.767	2.954	1.488	4.173	1.254	2.005	2.365	3.933	nan	1.753	8.442
10736	chr4	136943052	136944884	+	0	NA	intron (NM_007939, intron 3 of 16)	MamRep4096|DNA|hAT?	12848	NM_007939	13842	Mm.1390	NM_007939	ENSMUSG00000028661	Epha8	AW047546|Eek|Hek3|mKIAA1459	Eph receptor A8	protein-coding	16.132	14.940	5.927	13.941	5.760	4.272	10.961	11.789	8.985	12.020	10.781	6.754	11.470	14.239	13.247	14.082	9.609	12.895	9.573	5.213	4.234	11.508	5.423	4.237	16.824
2951	chr11	112118717	112123110	+	0	NA	Intergenic	Intergenic	590443	NR_024085	217294	Mm.297761	NM_146031	ENSMUSG00000041674	BC006965	-	cDNA sequence BC006965	ncRNA	0.362	0.410	0.390	nan	0.066	0.027	0.553	0.712	nan	nan	6.782	1.374	0.367	nan	0.519	0.661	0.476	nan	0.332	0.293	0.098	nan	0.099	0.323	0.366
15816	chrX	136343169	136349771	+	0	NA	Intergenic	RMER13A|LTR|ERVK	76217	NM_001110234	12070	Mm.90787	NM_009750	ENSMUSG00000046432	Bex3	AL033356|DXWsu67e|Gcap27|Nade|Ngfrap1	brain expressed X-linked 3	protein-coding	4.070	0.583	0.314	1.122	0.559	0.397	3.243	4.387	2.107	2.214	5.739	2.164	3.954	4.074	4.599	4.517	2.626	1.957	0.730	0.335	0.167	0.619	0.303	0.339	5.797
14290	chr8	72565037	72567703	+	0	NA	3' UTR (NM_172396, exon 5 of 5)	3' UTR (NM_172396, exon 5 of 5)	4678	NM_172396	66818	Mm.22565	NM_172396	ENSMUSG00000044600	Smim7	9130011J15Rik	small integral membrane protein 7	protein-coding	7.336	11.535	2.645	9.055	1.777	1.340	4.283	7.500	4.553	8.408	5.660	2.305	6.937	6.958	9.235	10.508	4.008	8.597	nan	2.153	2.248	9.206	2.002	2.414	13.696
14051	chr8	13667975	13669298	+	0	NA	intron (NM_009025, intron 1 of 23)	intron (NM_009025, intron 1 of 23)	8951	NM_009025	19414	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	4.053	3.912	1.480	4.731	1.365	0.377	2.960	4.192	1.833	2.361	4.875	2.103	2.016	3.816	3.439	2.734	1.190	3.660	1.555	1.151	0.707	2.921	0.737	0.256	3.147
13346	chr7	86413740	86463817	+	0	NA	Intergenic	L1M2|LINE|L1	-26635	NM_001011767	257929	Mm.377305	NM_001011767	ENSMUSG00000020168	Olfr299	MOR221-2	olfactory receptor 299	protein-coding	5.317	4.496	2.117	5.867	5.325	3.140	7.255	7.828	nan	5.180	3.596	3.141	6.956	8.393	7.979	nan	4.508	nan	3.469	2.479	2.000	nan	2.986	2.261	nan
10829	chr4	141421481	141431694	+	0	NA	Intergenic	Intergenic	5808	NM_013868	29818	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	6.322	6.185	2.086	8.494	5.339	3.516	4.177	6.459	nan	8.377	6.118	2.882	6.024	9.762	6.582	7.541	3.720	7.727	4.256	2.386	2.207	6.721	nan	3.864	11.041
10602	chr4	131602416	131604954	+	0	NA	Intergenic	MTEa-int|LTR|ERVL-MaLR	234593	NM_011214	19273	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding	2.657	4.662	1.326	6.866	1.882	1.857	1.594	1.836	2.373	4.350	0.991	1.198	1.222	1.659	nan	2.737	1.403	3.918	4.055	2.787	3.211	5.545	3.434	4.080	4.247
3204	chr12	16900308	16903379	+	0	NA	intron (NM_009072, intron 1 of 32)	PB1D10|SINE|Alu	6865	NM_009072	19878	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	14.804	15.056	4.267	14.341	5.568	4.471	10.797	9.258	7.570	17.182	7.836	4.914	12.349	13.765	13.047	14.727	8.631	12.330	6.000	2.003	2.467	6.929	2.648	5.051	22.774
9936	chr4	11048703	11051495	+	0	NA	TTS (NM_001085493)	TTS (NM_001085493)	26106	NM_001085493	76947	Mm.275265	NM_001085493	ENSMUSG00000050323	Ndufaf6	2310030N02Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6	protein-coding	2.025	1.599	0.844	3.788	2.283	1.980	0.917	nan	1.781	1.848	2.563	1.841	1.219	2.546	1.687	1.453	1.068	2.313	3.938	nan	3.762	8.709	3.568	3.378	1.162
8488	chr2	102784516	102786372	+	0	NA	3' UTR (NM_001077514, exon 11 of 11)	3' UTR (NM_001077514, exon 11 of 11)	79006	NM_001077515	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	6.309	2.092	1.136	4.215	2.006	1.214	2.437	3.621	3.249	3.172	5.254	2.029	4.868	3.169	3.768	5.267	3.850	3.949	0.853	1.159	0.513	0.788	0.410	0.290	5.161
1330	chr10	59439525	59445167	+	0	NA	promoter-TSS (NM_010959)	promoter-TSS (NM_010959)	-567	NM_010959	18302	Mm.123013	NM_010959	ENSMUSG00000009654	Oit3	EF-9|LZP	oncoprotein induced transcript 3	protein-coding	7.033	12.571	5.243	9.458	4.717	2.802	2.663	6.082	5.475	6.730	4.607	2.527	3.185	7.584	3.906	3.835	2.939	5.573	nan	3.260	3.361	5.130	3.497	2.809	5.089
1284	chr10	52093988	52099752	+	0	NA	intron (NM_011282, intron 30 of 43)	L1_Mus1|LINE|L1	74368	NM_153786	215031	Mm.87237	NM_153786	ENSMUSG00000049641	Vgll2	C130057C21Rik|VITO-1|Vito1|vgl-2	vestigial like family member 2	protein-coding	1.833	6.415	6.151	0.832	1.197	0.749	0.971	1.717	0.920	0.897	0.579	0.613	0.690	0.938	1.063	1.011	1.406	1.159	nan	0.787	0.574	0.528	0.739	0.624	0.708
4771	chr14	65618997	65620643	+	0	NA	intron (NM_001195674, intron 10 of 18)	MIRb|SINE|MIR	14553	NM_001195674	100503545	Mm.297364	NM_001195674	ENSMUSG00000061356	Nuggc	Gm600|SLIP-GC	nuclear GTPase, germinal center associated	protein-coding	5.724	0.933	0.285	2.214	1.574	0.585	2.751	2.037	3.660	3.384	0.882	0.835	1.847	2.112	2.732	6.048	4.289	5.505	2.268	nan	0.506	1.045	0.629	0.271	4.970
13185	chr7	52811500	52817620	+	0	NA	Intergenic	Lx|LINE|L1	-798844	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	2.077	1.556	0.874	2.289	2.072	1.772	7.466	6.332	1.513	1.480	0.724	1.449	3.935	4.512	3.746	3.644	2.302	1.986	0.569	0.873	1.076	0.658	0.612	0.581	5.980
10730	chr4	136374826	136376541	+	0	NA	Intergenic	L1_Mus4|LINE|L1	-47841	NM_001285482	15552	Mm.40573	NM_008309	ENSMUSG00000070687	Htr1d	5-HT-1D|5-HT1D|AI853647|Gpcr14|Htr1db	5-hydroxytryptamine (serotonin) receptor 1D	protein-coding	nan	0.361	0.707	0.272	0.388	0.070	0.469	0.641	nan	0.544	0.396	0.976	0.067	0.437	0.226	0.307	0.328	nan	3.072	3.302	3.498	2.747	7.588	8.260	0.311
9495	chr3	90425272	90427168	+	0	NA	intron (NM_145540, intron 1 of 29)	intron (NM_145540, intron 1 of 29)	7416	NM_145540	229543	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	1.333	1.121	0.407	1.346	2.698	0.932	5.479	4.541	2.903	2.227	2.168	2.219	3.819	3.836	4.291	5.290	2.112	4.208	4.015	1.871	0.559	4.198	2.994	1.783	1.301
9123	chr2	181270921	181272734	+	0	NA	intron (NM_198169, intron 2 of 9)	B1_Mur1|SINE|Alu	16139	NM_198169	229004	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	5.855	2.200	1.967	3.847	5.274	3.545	1.921	4.850	3.199	3.402	1.903	1.359	2.016	3.498	2.405	2.230	3.743	2.606	1.358	2.643	1.063	0.770	0.863	0.932	nan
3772	chr12	114115002	114117174	+	0	NA	Intergenic	L1Md_T|LINE|L1	353378	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	2.492	2.434	0.632	3.818	0.805	0.408	2.024	3.896	2.841	3.375	7.921	3.069	3.561	2.743	3.358	4.450	1.769	3.804	0.753	0.391	0.410	0.790	0.437	0.601	4.372
3526	chr12	81751284	81752808	+	0	NA	intron (NM_001174107, intron 2 of 10)	B4|SINE|B4	29124	NM_177395	338372	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	4.404	0.450	0.857	2.123	2.738	1.415	4.182	2.819	2.458	2.438	3.690	2.027	4.850	5.420	3.553	4.010	6.199	3.431	1.056	0.860	1.359	0.606	1.524	1.249	4.638
4935	chr14	103748010	103749087	+	0	NA	Intergenic	Intergenic	-49116	NR_045148	70898	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	5.529	6.109	3.568	2.710	2.835	2.550	4.337	5.294	2.564	2.984	4.466	3.344	2.770	4.155	3.555	3.863	3.567	2.695	5.444	5.645	4.828	3.164	8.909	5.529	4.100
5604	chr15	97169636	97175136	+	0	NA	Intergenic	Intergenic	-74721	NM_172293	239647	Mm.130036	NM_172293	ENSMUSG00000044250	Pced1b	Fam113b	PC-esterase domain containing 1B	protein-coding	1.196	9.013	4.350	1.011	0.584	0.492	0.579	0.939	0.808	0.532	0.438	0.400	0.577	0.613	0.779	nan	0.855	0.928	0.677	0.881	0.758	0.755	0.487	0.356	1.081
11237	chr5	53601068	53607026	+	0	NA	intron (NM_001277116, intron 3 of 12)	intron (NM_001277116, intron 3 of 12)	13561	NM_001080927	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	3.146	0.581	0.241	1.694	1.674	0.875	4.243	4.550	2.418	4.159	1.219	1.454	2.838	4.114	4.157	nan	3.403	3.242	6.227	3.890	3.683	6.257	6.208	5.898	5.206
10354	chr4	106881462	106890467	+	0	NA	Intergenic	Intergenic	-25506	NM_198438	72475	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	2.620	1.044	0.474	3.124	1.335	0.666	2.913	3.167	3.263	4.474	0.495	0.723	3.767	4.494	3.237	3.972	2.528	4.412	2.987	2.743	1.917	6.464	3.542	2.584	5.341
6441	chr17	26851967	26854182	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-11509	NM_008700	18091	Mm.41974	NM_008700	ENSMUSG00000015579	Nkx2-5	Csx|Nkx-2.5|Nkx2.5|tinman	NK2 homeobox 5	protein-coding	7.611	9.167	3.487	7.446	5.406	3.992	7.849	6.736	3.935	9.137	4.547	3.109	5.317	8.607	7.270	10.228	6.557	6.207	4.486	1.630	2.897	3.702	3.019	4.619	11.378
12982	chr7	20283368	20287176	+	0	NA	Intergenic	URR1B|DNA|hAT-Charlie	48793	NM_001167158	100042964	Mm.484995	NM_001167158	ENSMUSG00000095745	Gm4133	Vmn1r98	predicted gene 4133	protein-coding	3.603	7.786	2.275	3.474	1.842	0.871	5.657	8.826	2.202	2.926	2.592	1.243	4.980	5.996	5.403	4.200	3.357	2.944	1.195	2.215	2.690	3.794	1.442	0.754	3.768
11876	chr5	139839643	139844259	+	0	NA	Intergenic	Intergenic	-15108	NM_025604	66506	Mm.29070	NM_025604	ENSMUSG00000029551	Psmg3	1810042K04Rik|4930403H09Rik|AI303239	proteasome (prosome, macropain) assembly chaperone 3	protein-coding	6.514	3.983	1.061	8.068	2.672	1.477	3.486	2.891	3.296	3.920	2.790	1.260	2.948	3.848	4.661	5.291	3.064	5.388	3.484	1.959	2.005	4.952	nan	2.076	6.945
9920	chr4	8873660	8886990	+	0	NA	Intergenic	Intergenic	189919	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.703	1.362	0.813	0.693	0.379	0.157	0.378	nan	0.547	0.677	0.465	0.490	0.413	0.490	0.675	0.718	0.367	0.831	4.654	nan	2.425	8.409	4.318	3.000	0.613
1592	chr10	91192664	91196137	+	0	NA	Intergenic	RMER13B|LTR|ERVK	-22781	NM_001080130	21917	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	nan	0.548	0.377	0.345	0.038		0.155	0.437	0.331	0.299	0.215	0.086	0.148	nan	0.312	0.492	0.235	nan	1.796	1.215	0.313	nan	nan	0.111	0.307
9715	chr3	115344182	115345406	+	0	NA	Intergenic	Intergenic	263829	NM_153157	229759	Mm.54183	NM_153157	ENSMUSG00000027965	Olfm3	B230206G02Rik	olfactomedin 3	protein-coding	5.342	3.369	2.103	3.496	1.771	1.029	8.308	5.122	2.574	2.414	3.175	4.647	1.626	4.122	2.976	2.646	2.038	3.399	1.052	1.696	0.452	0.829	nan	0.921	nan
12375	chr6	85381506	85385002	+	0	NA	Intergenic	Intergenic	-8620	NM_001003955	52055	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	6.330	6.724	3.809	3.488	3.954	2.621	5.256	3.570	2.622	3.691	1.991	1.219	4.593	6.229	4.902	7.623	6.556	4.989	nan	1.688	1.275	1.279	1.192	1.145	6.255
6833	chr17	71599331	71601590	+	0	NA	Intergenic	L2b|LINE|L2	-1699	NR_027952	68789	Mm.75202	NR_015549	ENSMUSG00000085492	Trmt61b	1110039F03Rik|623451|Gm6431	tRNA methyltransferase 61B	ncRNA	4.121	0.873	0.374	2.581	1.612	0.957	2.322	1.978	3.174	2.887	1.045	0.865	2.648	4.985	4.875	6.378	1.972	5.496	1.228	0.120	0.336	0.704	0.600	0.265	4.999
10247	chr4	87814430	87830172	+	0	NA	intron (NM_027326, intron 5 of 10)	Lx8|LINE|L1	-15978	NM_029931	70122	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.692	nan	0.535	0.716	0.283	0.213	0.343	nan	nan	0.547	0.514	0.683	0.277	0.409	0.446	0.644	0.496	nan	3.147	nan	1.910	15.387	3.816	2.908	nan
13312	chr7	80589150	80591095	+	0	NA	intron (NM_173863, intron 14 of 14)	PB1D7|SINE|Alu	-45895	NR_040343	100504375	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	OTTMUSG00000027171	predicted gene 15880	ncRNA	1.685	0.793	0.536	nan	1.027	0.953	0.783	0.791	2.412	2.515	0.963	0.822	3.636	3.411	1.717	nan	1.944	2.843	0.803	0.522	0.315	0.586	0.349	0.429	2.534
14968	chr9	37320770	37328277	+	0	NA	intron (NM_001081429, intron 4 of 15)	intron (NM_001081429, intron 4 of 15)	23869	NM_001081429	245902	Mm.390150	NM_001081429	ENSMUSG00000034303	Ccdc15	A630039F14Rik|D030074L19	coiled-coil domain containing 15	protein-coding	3.803	0.765	0.464	1.655	1.229	0.541	2.037	6.527	2.245	2.804	0.912	0.941	2.023	2.885	3.100	3.476	nan	4.301	nan	0.987	0.557	1.172	0.910	0.483	3.174
14018	chr8	12072488	12075184	+	0	NA	Intergenic	Intergenic	233315	NM_029326	75528	Mm.440342	NM_029326	ENSMUSG00000031512	Tex29	1700018L24Rik	testis expressed 29	protein-coding	3.933	0.676	0.216	4.594	4.158	2.515	2.442	4.206	4.788	5.401	1.430	1.365	3.450	5.024	4.972	4.255	3.363	3.848	0.731	0.576	0.396	1.004	0.632	0.399	5.896
5005	chr15	3235786	3237450	+	0	NA	Intergenic	Intergenic	-34149	NM_001042613	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	3.842	0.636	0.428	2.414	1.182	0.635	3.817	3.363	3.830	3.043	0.390	0.707	8.054	4.804	5.859	4.688	6.101	4.606	0.588	0.472	0.285	0.327	0.537	0.208	2.805
10357	chr4	106974738	106981400	+	0	NA	intron (NM_023672, intron 4 of 17)	intron (NM_023672, intron 4 of 17)	66599	NM_023672	72475	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	0.752	0.527	0.541	0.671	0.573	0.171	0.989	nan	0.641	0.917	0.235	0.419	1.364	1.594	0.929	1.536	1.034	nan	2.412	2.327	2.121	5.822	3.031	2.373	1.018
10894	chr4	148551863	148554745	+	0	NA	intron (NM_020009, intron 56 of 57)	intron (NM_020009, intron 56 of 57)	-5123	NM_016699	50912	Mm.266635	NM_016699	ENSMUSG00000017264	Exosc10	PM-Scl|PM/Scl-100|Pmscl2|RRP6|p2|p3|p4	exosome component 10	protein-coding	8.201	nan	0.991	7.381	8.180	5.982	4.185	5.746	4.397	5.373	2.090	1.689	5.129	8.401	5.853	6.257	3.960	7.896	0.911	1.230	0.936	1.052	1.216	1.226	9.269
2997	chr11	116053870	116061629	+	0	NA	intron (NM_172569, intron 13 of 15)	intron (NM_172569, intron 13 of 15)	20212	NM_001009573	70450	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	6.675	nan	1.835	6.229	5.586	4.745	3.962	6.814	4.822	nan	3.474	3.741	5.354	6.815	5.224	5.823	4.402	5.473	4.536	nan	2.733	3.164	2.840	2.901	5.107
10558	chr4	128781434	128786468	+	0	NA	intron (NM_001081098, intron 6 of 8)	intron (NM_001081098, intron 6 of 8)	22161	NM_001081098	230761	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	3.401	0.512	0.373	1.400	0.917	0.418	5.790	6.708	1.657	1.710	0.666	0.892	6.116	4.319	nan	6.963	3.811	3.176	3.222	1.180	0.998	3.521	3.638	2.021	6.067
11363	chr5	76952690	76954751	+	0	NA	intron (NM_025939, intron 1 of 8)	B2_Mm2|SINE|B2	-2142	NM_172146	231327	Mm.202337	NM_172146	ENSMUSG00000029246	Ppat	5730454C12Rik|AA408689|AA675351|AI507113|C79945	phosphoribosyl pyrophosphate amidotransferase	protein-coding	5.801	1.763	1.207	1.812	1.425	0.408	2.755	4.148	2.350	2.322	5.572	2.109	2.652	3.516	3.266	2.265	1.849	2.593	0.971	1.619	0.297	0.637	0.838	0.253	3.101
6570	chr17	34756760	34758797	+	0	NA	Intergenic	MMERGLN-int|LTR|ERV1	-13881	NM_009780	12268	Mm.477109	NM_009780	ENSMUSG00000073418	C4b	C4|Ss	complement component 4B (Chido blood group)	protein-coding	4.053	0.891	0.850	0.799	1.186	0.743	7.297	1.505	0.946	0.678	0.471	0.678	6.891	8.521	2.576	2.942	2.794	2.646	6.695	6.931	7.343	8.334	7.816	7.365	2.833
1770	chr10	116810274	116814672	+	0	NA	intron (NM_001033333, intron 13 of 24)	intron (NM_001033333, intron 13 of 24)	83220	NR_131036	75878	Mm.370607	NR_131036		4930579P08Rik	-	RIKEN cDNA 4930579P08 gene	ncRNA	6.758	9.126	3.356	7.182	4.357	3.858	4.252	4.445	4.598	7.748	3.460	3.268	5.029	5.891	6.576	6.597	5.652	nan	5.243	2.976	3.291	4.272	3.783	4.698	8.975
4494	chr14	20642240	20646567	+	0	NA	Intergenic	Lx8b|LINE|L1	12137	NM_021508	59011	Mm.439911	NM_021508	ENSMUSG00000068697	Myoz1	2310001N11Rik|AV090278|FATZ|Myoz	myozenin 1	protein-coding	2.723	3.853	1.704	2.691	1.777	1.259	2.382	3.012	nan	3.135	2.310	1.614	1.838	2.558	2.473	3.007	2.140	2.758	6.762	5.206	3.846	5.377	6.701	5.612	3.543
5458	chr15	80991441	80993310	+	0	NA	intron (NM_134091, intron 1 of 21)	B4A|SINE|B4	14610	NM_134091	105835	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	5.313	nan	1.127	nan	4.400	3.710	4.357	4.572	2.718	3.127	3.496	1.439	4.518	5.813	3.554	2.916	6.002	3.723	0.788	1.655	1.167	nan	0.953	1.228	2.972
2735	chr11	98009906	98011710	+	0	NA	intron (NM_001159319, intron 6 of 12)	intron (NM_001159319, intron 6 of 12)	7564	NM_001159320	12295	Mm.41252	NM_031173	ENSMUSG00000020882	Cacnb1	CAB1|Cchb1|Cchlb1	calcium channel, voltage-dependent, beta 1 subunit	protein-coding	10.964	11.581	2.751	13.730	7.390	5.667	10.418	11.216	6.490	16.967	6.058	4.701	8.348	13.940	11.333	12.974	6.192	9.499	3.730	2.772	3.642	5.794	nan	5.502	18.274
12854	chr6	146279256	146280453	+	0	NA	intron (NM_010586, intron 36 of 55)	intron (NM_010586, intron 36 of 55)	222369	NM_010586	16439	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	1.729	0.900	0.438	nan	0.501	0.522	0.898	1.556	1.499	1.883	0.306	0.195	nan	4.153	1.730	2.419	1.252	1.066	0.882	nan	0.600	nan	0.634	0.236	2.149
1209	chr10	37044487	37046542	+	0	NA	Intergenic	Lx3B|LINE|L1	70970	NM_008229	15182	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	3.949	1.480	1.278	1.484	0.779	0.310	3.631	3.371	1.608	1.148	1.500	1.336	3.328	1.549	3.065	4.160	3.006	2.786	2.931	3.843	2.664	4.064	4.476	3.001	3.143
5622	chr15	98572436	98575388	+	0	NA	intron (NM_001201322, intron 1 of 3)	B1_Mm|SINE|Alu	2908	NM_001201322	73863	Mm.66894	NM_001201322	ENSMUSG00000022993	4930415O20Rik	-	RIKEN cDNA 4930415O20 gene	protein-coding	2.914	1.259	0.373	3.076	1.784	0.485	6.561	1.889	1.736	2.600	1.210	0.710	7.706	5.299	3.096	4.246	2.114	5.271	2.827	1.334	2.070	5.103	1.490	1.096	4.539
6898	chr17	83775685	83777627	+	0	NA	intron (NM_001171053, intron 9 of 13)	PB1|SINE|Alu	70134	NM_025325	107766	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	3.527	1.841	1.281	1.499	2.445	1.489	5.366	3.697	2.373	2.457	1.170	2.701	5.239	4.514	4.463	4.659	4.314	3.644	3.561	3.415	1.426	2.849	5.091	2.219	2.679
6655	chr17	45877852	45880719	+	0	NA	Intergenic	RSINE1|SINE|B4	-145441	NM_028164	72240	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	4.076	1.380	1.521	2.188	6.194	2.930	5.873	5.709	3.200	6.145	6.157	3.163	4.020	6.866	4.098	5.220	nan	3.287	0.724	1.335	1.316	0.944	1.077	0.547	4.562
6629	chr17	43495059	43500452	+	0	NA	intron (NM_008585, intron 5 of 13)	intron (NM_008585, intron 5 of 13)	5018	NM_008585	17287	Mm.5346	NM_008585	ENSMUSG00000023914	Mep1a	AI098089|AW107200|Mep-1|Mep-1a|Mep1	meprin 1 alpha	protein-coding	4.431	1.082	0.355	5.135	3.042	1.493	2.676	1.686	3.413	4.127	1.419	0.840	4.183	5.350	3.705	7.198	nan	4.899	1.626	1.488	0.610	0.987	2.125	0.960	6.131
7077	chr18	24209173	24212503	+	0	NA	intron (NM_001160404, intron 1 of 12)	L1MD1|LINE|L1	4844	NM_001160404	14423	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	2.465	1.081	0.686	2.372	5.037	2.897	6.686	2.691	2.963	2.411	4.589	4.949	3.807	5.317	2.121	nan	2.274	2.647	nan	1.621	0.815	nan	1.734	1.194	2.820
6275	chr16	97755519	97758518	+	0	NA	intron (NM_023663, intron 1 of 7)	intron (NM_023663, intron 1 of 7)	6737	NM_023663	72388	Mm.35290	NM_023663	ENSMUSG00000005251	Ripk4	2310069J12Rik|AI552420|ANKK2|Ankrd3|DIk|PKK|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding	9.441	8.419	3.352	8.077	6.662	2.688	5.795	7.509	nan	5.334	4.049	2.999	5.295	7.613	nan	8.829	5.120	7.963	nan	4.897	2.878	4.794	7.178	5.785	10.709
11785	chr5	135430127	135433861	+	0	NA	intron (NM_146001, intron 16 of 30)	intron (NM_146001, intron 16 of 30)	-37448	NM_148932	107939	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	2.852	0.928	0.499	2.411	5.178	4.230	4.851	5.314	2.045	2.211	4.791	3.499	2.430	3.310	4.230	2.797	2.069	3.812	2.394	1.352	1.524	1.647	nan	3.306	2.098
5727	chr15	102288991	102291243	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-6176	NM_001014976	105988	Mm.288324	NM_001014976	ENSMUSG00000058290	Espl1	AL024103|AU045071|Cerp|ESP1|PRCE|SSE	extra spindle pole bodies 1, separase	protein-coding	10.950	9.414	5.990	7.799	8.831	5.905	9.979	17.562	5.775	4.882	3.995	4.316	10.315	11.893	8.581	7.405	8.385	6.904	4.550	4.746	4.315	3.703	5.733	5.312	6.293
11214	chr5	44372406	44374509	+	0	NA	Intergenic	MER31A|LTR|ERV1	-146851	NM_173764	231225	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	3.352	0.845	0.621	3.028	1.437	0.640	4.475	5.762	3.006	2.847	3.095	3.328	3.322	3.881	3.783	5.104	2.896	5.469	2.929	0.562	0.610	2.227	1.218	0.913	1.906
7714	chr19	34236981	34241913	+	0	NA	TTS (NM_007392)	TTS (NM_007392)	15926	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	2.833	0.930	0.472	1.615	2.721	1.388	4.016	6.773	2.150	1.775	4.859	2.941	3.076	5.578	6.114	3.916	4.668	2.064	0.369	0.437	0.224	0.394	0.400	0.213	1.935
15247	chr9	68408645	68412028	+	0	NA	Intergenic	Intergenic	109864	NR_040737	74951	Mm.60678	NR_040737	ENSMUSG00000111303	4930502A04Rik	-	RIKEN cDNA 4930502A04 gene	ncRNA	4.801	0.635	0.371	2.455	1.757	0.831	2.080	7.121	4.170	3.312	0.499	0.511	4.697	4.787	7.829	9.215	3.082	8.267	nan	0.878	0.608	2.947	1.299	1.164	8.464
5620	chr15	98370693	98372091	+	0	NA	Intergenic	Lx4B|LINE|L1	7716	NM_147036	259038	Mm.377802	NM_147036	ENSMUSG00000056184	Olfr283	MOR160-1	olfactory receptor 283	protein-coding	6.039	1.714	0.862	3.152	2.487	1.709	4.108	6.521	2.223	2.203	2.467	1.506	4.697	3.576	2.734	2.452	2.325	2.895	0.763	1.212	0.606	0.941	0.230	0.485	1.855
15766	chrX	92652903	92654302	+	0	NA	Intergenic	Lx3A|LINE|L1	-54030	NM_173783	215641	Mm.327999	NM_173783	ENSMUSG00000067649	Mageb18	B430216B18Rik	melanoma antigen family B, 18	protein-coding	2.630	0.117		1.747	3.576	2.104	2.015	1.886	2.463	2.994	1.237	0.714	2.826	4.033	1.967	2.104	2.045	3.801	0.552	0.670	0.410	0.276	0.122	0.212	0.789
15162	chr9	61761532	61763280	+	0	NA	Intergenic	Intergenic	152104	NM_018853	56040	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	4.405	13.340	4.254	5.029	1.385	0.356	3.135	3.288	3.298	4.343	4.449	2.343	4.681	5.063	7.358	6.022	2.859	8.483	4.275	1.926	1.122	6.641	1.297	0.892	10.659
931	chr1	181597934	181599233	+	0	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	-87132	NM_207280	403180	Mm.220754	NM_207280	ENSMUSG00000050625	Ccdc121	6530421E24Rik|Gm755	coiled-coil domain containing 121	protein-coding	7.174	6.091	2.302	5.161	2.241	1.570	4.170	4.510	3.373	9.057	2.604	2.326	6.433	4.903	5.765	10.449	5.435	6.358	3.887	0.923	1.839	5.226	2.835	3.063	10.931
14642	chr8	119700589	119703599	+	0	NA	intron (NM_026922, intron 1 of 26)	intron (NM_026922, intron 1 of 26)	2085	NM_026922	69047	Mm.46251	NM_026922	ENSMUSG00000034112	Atp2c2	1810010G06Rik|Spca2|mKIAA0703	ATPase, Ca++ transporting, type 2C, member 2	protein-coding	4.276	1.251	0.728	6.072	4.799	2.274	4.583	4.492	4.525	4.989	2.759	1.955	8.322	7.339	7.422	6.234	3.584	6.696	1.108	0.956	0.741	1.233	1.152	0.628	5.493
11827	chr5	136982019	136986011	+	0	NA	intron (NM_027318, intron 2 of 4)	intron (NM_027318, intron 2 of 4)	2889	NM_001310747	70103	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	1.819	0.926	0.577	1.919	2.097	1.176	2.139	2.674	2.418	2.381	0.784	0.719	2.581	3.706	3.169	3.185	2.149	3.257	0.734	0.394	0.382	0.569	nan	0.362	1.598
6903	chr17	84277423	84279790	+	0	NA	intron (NM_183021, intron 29 of 37)	intron (NM_183021, intron 29 of 37)	-90659	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	1.042	0.849	0.797	1.217	1.228	0.881	1.220	0.534	nan	1.030	1.494	0.707	2.294	4.491	1.475	1.517	1.590	1.456	0.558	0.582	0.958	0.187	0.618	0.627	1.769
7185	chr18	38525843	38527416	+	0	NA	Intergenic	B3|SINE|B2	74639	NM_011898	24066	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty homolog 4 (Drosophila)	protein-coding	6.222	6.933	2.625	3.646	3.374	1.510	5.330	6.142	3.570	4.851	2.872	1.158	4.489	5.283	4.264	5.518	4.272	4.838	2.785	2.314	1.039	2.557	2.599	1.265	5.378
15403	chr9	96658990	96660162	+	0	NA	Intergenic	L1M4|LINE|L1	-28073	NM_053268	114713	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	4.343	8.732	5.114	4.871	3.060	2.142	2.182	4.652	3.222	3.243	2.809	2.253	3.775	5.013	3.768	5.208	3.103	4.689	2.356	1.442	0.844	3.001	1.419	1.133	5.562
4505	chr14	21423581	21430339	+	0	NA	intron (NM_001243041, intron 10 of 10)	(TTTA)n|Simple_repeat|Simple_repeat	-72810	NM_001205241	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	6.522	0.800	0.554	6.580	6.532	5.348	3.066	7.090	nan	5.601	4.905	2.107	4.956	9.386	4.683	5.976	3.971	6.834	1.268	1.452	1.339	nan	1.299	0.983	5.629
8854	chr2	155153304	155170190	+	0	NA	intron (NM_001243712, intron 3 of 25)	Lx4A|LINE|L1	28266	NM_008395	16396	Mm.208286	NM_008395	ENSMUSG00000027598	Itch	6720481N21Rik|8030492O04Rik|A130065M08|AIP4|C230047C07Rik	itchy, E3 ubiquitin protein ligase	protein-coding	7.229	0.834	0.748	3.049	2.989	2.016	5.237	6.050	6.081	7.704	1.053	1.194	9.637	6.501	4.633	8.051	10.338	6.717	nan	1.254	0.959	0.740	1.191	1.083	5.570
3319	chr12	52928760	52933402	+	0	NA	intron (NM_198111, intron 5 of 13)	intron (NM_198111, intron 5 of 13)	231698	NM_198111	238161	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	12.132	13.384	5.096	13.269	7.328	6.568	7.948	7.279	7.853	15.154	7.400	5.690	10.836	10.274	10.313	10.981	7.545	11.611	5.885	3.162	4.046	6.782	6.342	7.930	17.385
7975	chr2	13628919	13631447	+	0	NA	Intergenic	Intergenic	55872	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	5.948	0.949	0.745	1.599	1.931	0.676	8.170	8.534	3.417	3.249	0.597	1.674	10.135	5.295	7.160	8.196	8.466	6.601	0.692	0.510	0.242	0.798	0.619	0.266	4.323
14512	chr8	106770804	106772795	+	0	NA	intron (NM_173037, intron 14 of 17)	intron (NM_173037, intron 14 of 17)	88731	NM_173037	272538	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	7.612	13.104	6.255	7.422	2.986	1.491	4.839	7.297	4.345	5.443	3.067	2.704	5.588	6.344	6.765	9.046	6.633	5.813	4.721	3.304	2.793	7.863	2.223	1.538	9.456
8326	chr2	69849513	69852569	+	0	NA	Intergenic	Intergenic	-10521	NM_001110145	20823	Mm.10508	NM_009278	ENSMUSG00000068882	Ssb	SS-B	Sjogren syndrome antigen B	protein-coding	4.917	0.817	0.713	2.674	2.372	2.793	3.805	4.436	2.968	2.678	0.871	0.795	5.443	4.826	4.016	5.199	7.171	4.336	1.344	0.884	0.982	0.847	1.074	0.698	4.241
3755	chr12	113421176	113423153	+	0	NA	Intergenic	Intergenic	-67401	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	2.248	1.424	0.637	4.308	0.583	0.188	0.570	0.510	1.240	1.439	5.256	1.496	0.461	0.792	1.067	nan	0.610	2.018	0.824	0.419	0.372	1.337	0.222	0.385	2.450
13694	chr7	125983832	125986287	+	0	NA	intron (NM_001101488, intron 2 of 6)	intron (NM_001101488, intron 2 of 6)	97352	NM_001101488	269994	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	3.410	2.182	0.458	1.876	1.979	1.517	3.709	5.201	2.069	1.615	3.402	1.183	3.824	4.570	2.786	2.847	2.267	2.303	0.878	0.954	0.998	2.073	0.787	0.386	2.843
7444	chr18	84254060	84261701	+	0	NA	intron (NM_001033341, intron 8 of 8)	intron (NM_001033341, intron 8 of 8)	169722	NM_146090	225791	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	nan	13.262	5.803	9.800	6.101	3.444	6.259	10.284	7.451	17.562	6.465	4.204	7.285	9.542	7.267	9.224	7.514	nan	4.312	3.214	3.037	4.007	3.097	4.178	15.269
2219	chr11	54765994	54777145	+	0	NA	intron (NM_178626, intron 1 of 5)	PB1D10|SINE|Alu	16134	NM_178626	72729	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	5.674	9.800	4.487	5.879	6.422	4.553	3.648	4.153	3.612	4.384	2.805	2.489	3.102	5.257	4.285	4.641	3.645	4.803	nan	2.514	2.254	1.933	2.360	2.320	4.281
14123	chr8	34797282	34800761	+	0	NA	Intergenic	Intergenic	-8589	NM_176933	319520	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	3.784	0.754	0.757	0.860	1.816	1.635	4.412	6.030	1.732	1.431	4.951	3.901	3.076	2.786	2.991	5.419	5.479	2.889	0.347	0.978	0.993	1.339	0.414	0.383	3.527
11826	chr5	136954199	136959060	+	0	NA	intron (NM_001347504, intron 1 of 3)	MYSERV6-int|LTR|ERVK	3354	NM_001347504	66437	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	4.569	1.337	0.585	3.431	6.768	4.992	3.817	4.026	5.129	5.737	2.972	1.601	3.895	7.372	4.230	3.981	2.836	5.626	0.880	0.844	0.845	0.895	nan	0.500	3.002
8917	chr2	160191993	160193665	+	0	NA	Intergenic	Intergenic	134665	NM_001033411	329554	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	6.300	5.668	1.758	4.261	1.993	1.413	3.829	4.461	nan	7.500	2.850	1.260	3.622	nan	5.051	6.347	3.467	5.730	3.211	1.216	2.545	3.898	2.780	3.619	9.355
5482	chr15	81790344	81791736	+	0	NA	intron (NM_001081016, intron 17 of 22)	RCHARR1|DNA|hAT-Charlie	-11633	NM_153484	21685	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	4.092	8.406	2.052	6.649	2.044	1.444	2.834	5.824	2.540	4.700	nan	2.297	4.467	5.184	4.114	5.911	nan	5.171	4.150	0.926	1.146	5.420	1.282	2.430	8.878
10448	chr4	119303451	119307193	+	0	NA	TTS (NM_001110129)	TTS (NM_001110129)	-10809	NM_011732	22608	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	6.032	1.126	0.453	3.865	4.646	2.579	4.482	5.663	3.596	5.461	1.777	1.607	4.995	9.990	5.383	6.025	2.992	5.068	1.967	1.357	1.210	1.961	1.328	0.548	6.903
2464	chr11	75135323	75137461	+	0	NA	intron (NM_001002764, intron 13 of 18)	intron (NM_001002764, intron 13 of 18)	31760	NM_001098203	15248	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	nan	2.080	1.063	1.064	0.785	0.473	nan	0.635	0.868	0.720	1.175	0.885	0.604	nan	nan	nan	1.350	nan	4.156	3.481	nan	2.722	5.330	4.781	0.764
1077	chr10	6835478	6837140	+	0	NA	intron (NM_001302796, intron 3 of 4)	intron (NM_001302796, intron 3 of 4)	47733	NM_001039652	18390	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	2.373	1.532	0.211	1.863	1.764	0.688	4.262	0.789	3.362	2.958	1.086	0.177	2.912	3.616	3.863	5.706	4.095	5.683	1.521	0.653	0.789	1.159	1.024	0.829	4.491
5413	chr15	78765389	78768924	+	0	NA	exon (NM_008595, exon 2 of 8)	exon (NM_008595, exon 2 of 8)	6289	NM_008595	17305	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	nan	5.240	1.406	nan	0.890	0.397	nan	4.185	1.702	nan	nan	1.299	2.921	nan	3.678	3.449	nan	3.263	3.434	1.286	1.182	4.392	1.680	1.308	4.000
6178	chr16	87688426	87689921	+	0	NA	Intergenic	B1_Mm|SINE|Alu	-9781	NM_007520	12013	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	6.435	nan	1.030	3.702	4.978	3.985	3.908	5.944	3.085	3.387	2.670	1.751	4.558	4.353	3.153	4.238	3.676	3.898	1.085	1.311	1.408	nan	0.382	1.044	3.212
14689	chr8	122886198	122901569	+	0	NA	non-coding (NR_037865, exon 10 of 14)	non-coding (NR_037865, exon 10 of 14)	45509	NM_007662	12555	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	3.327	1.319	0.530	3.162	1.706	1.034	3.483	6.819	2.180	2.592	1.365	1.421	3.268	3.975	3.757	nan	2.537	2.969	3.476	2.568	2.311	5.742	2.656	1.815	4.215
1299	chr10	57363556	57366762	+	0	NA	Intergenic	RMER17A|LTR|ERVK	121194	NR_045353	74928	Mm.416643	NR_045353	ENSMUSG00000097370	4930467K11Rik	-	RIKEN cDNA 4930467K11 gene	ncRNA	5.683	0.488	0.240	1.962	2.508	1.044	4.207	2.729	4.572	4.286	0.990	1.986	6.101	3.474	6.110	4.998	4.805	5.796	nan	0.863	0.476	1.250	1.084	0.712	4.899
9289	chr3	51832239	51836082	+	0	NA	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	172981	NM_001310482	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	3.951	1.468	0.626	3.859	1.811	1.384	3.708	5.503	3.107	2.370	1.272	1.437	3.002	2.554	3.603	4.157	2.390	3.541	3.693	2.579	2.104	3.277	5.478	3.825	2.501
967	chr1	183769490	183773006	+	0	NA	Intergenic	Intergenic	262750	NM_028516	73363	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	8.076	11.616	4.449	7.022	3.199	1.956	5.095	5.871	3.647	8.586	5.133	3.161	6.668	7.003	6.548	10.296	6.910	7.606	6.500	3.583	2.701	5.840	5.442	5.432	10.107
9853	chr3	144279584	144280409	+	0	NA	Intergenic	Intergenic	-74741	NM_010723	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	2.616	1.371	0.606	2.008	0.595	0.204	1.744	1.310	1.985	1.659	0.763	0.657	2.315	3.581	2.526	2.589	1.923	3.156	1.808	0.968	0.638	2.133	1.468	0.750	2.635
1611	chr10	93497813	93499903	+	0	NA	intron (NM_010401, intron 12 of 19)	intron (NM_010401, intron 12 of 19)	10090	NM_010401	15109	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	9.364	8.936	3.161	8.404	5.044	1.888	6.473	6.628	4.397	12.068	nan	3.612	6.288	8.987	7.343	9.244	6.692	6.901	nan	3.097	2.839	4.598	3.583	2.718	13.901
5109	chr15	35844585	35852751	+	0	NA	intron (NM_177151, intron 43 of 61)	intron (NM_177151, intron 43 of 61)	89578	NM_053071	12864	Mm.548	NM_053071	ENSMUSG00000014313	Cox6c	-	cytochrome c oxidase subunit VIc	protein-coding	5.107	1.244	0.608	3.682	2.459	1.268	1.433	2.332	3.160	4.344	1.159	0.608	4.697	4.997	3.633	3.817	3.823	4.778	1.591	0.906	0.601	nan	0.874	0.555	7.022
11499	chr5	104072229	104076543	+	0	NA	intron (NM_001163772, intron 4 of 9)	intron (NM_001163772, intron 4 of 9)	3222	NM_001163772	100271704	Mm.366664	NM_001163772	ENSMUSG00000091034	Gm17660	Scpppq1	predicted gene, 17660	protein-coding	3.079	0.686	0.545	5.189	3.876	3.334	nan	2.534	4.710	4.271	1.668	0.813	4.800	5.906	3.223	4.413	2.036	6.124	nan	0.791	1.367	1.001	1.348	1.416	1.848
322	chr1	75331921	75335317	+	0	NA	Intergenic	B3|SINE|B2	-15982	NM_001110831	13437	Mm.24680	NM_016878	ENSMUSG00000026209	Dnpep	AA407814	aspartyl aminopeptidase	protein-coding	6.708	0.663	0.330	2.153	0.957	0.247	2.634	1.848	2.448	2.481	1.099	1.475	5.322	2.141	2.292	4.825	4.874	3.660	6.141	3.848	3.252	5.392	4.251	3.139	5.811
15545	chr9	115759195	115764345	+	0	NA	Intergenic	Intergenic	-147685	NM_028638	73748	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	0.654	0.573	0.500	0.394	0.222	0.144	0.170	0.490	1.475	1.252	0.789	0.546	0.407	0.418	0.448	0.600	0.354	0.846	3.380	3.259	1.543	4.674	nan	1.758	0.592
12112	chr6	30583930	30586492	+	0	NA	intron (NM_027926, intron 9 of 10)	intron (NM_027926, intron 9 of 10)	16842	NM_027926	71791	Mm.105759	NM_027926	ENSMUSG00000039070	Cpa4	1110019K20Rik|AV009555	carboxypeptidase A4	protein-coding	0.478	0.638	0.428	0.698	0.280	0.126	0.582	0.448	0.440	0.574	0.965	0.390	0.476	0.424	0.697	nan	0.609	nan	4.193	3.586	1.498	4.784	2.577	1.512	0.644
14387	chr8	84898006	84900102	+	0	NA	Intergenic	Intergenic	-2874	NM_010635	16596	Mm.4847	NM_010635	ENSMUSG00000054191	Klf1	Eklf|Nan	Kruppel-like factor 1 (erythroid)	protein-coding	4.947	1.781	0.514	1.604	1.900	0.796	3.611	3.819	2.445	2.495	2.716	0.969	4.250	2.626	4.294	3.890	3.674	3.309	nan	0.784	0.234	0.509	0.282		3.634
6689	chr17	47292444	47293697	+	0	NA	intron (NM_001097623, intron 5 of 19)	intron (NM_001097623, intron 5 of 19)	62840	NM_172622	224829	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	3.280	5.071	2.664	3.921	1.046	1.069	2.584	1.353	1.881	2.158	0.589	0.263	2.164	3.802	3.471	4.034	2.860	2.257	1.235	0.872	1.471	0.981	0.588	0.224	4.410
15062	chr9	50249058	50253235	+	0	NA	Intergenic	Intergenic	-17964	NR_131161	71873		NR_131161	ENSMUSG00000110916	2310003N18Rik	-	RIKEN cDNA 2310003N18 gene	ncRNA	3.166	0.793	0.435	0.814	0.953	0.396	1.723	3.335	2.097	2.210	10.343	3.838	1.290	1.924	nan	1.484	1.064	1.540	0.730	0.808	0.357	nan	0.584	0.629	2.009
13046	chr7	28257330	28261191	+	0	NA	Intergenic	MMVL30-int|LTR|ERV1	-8621	NM_198425	386655	Mm.258201	NM_198425	ENSMUSG00000046058	Eid2	Cri2|EID-2	EP300 interacting inhibitor of differentiation 2	protein-coding	10.275	8.051	3.910	7.320	7.222	3.852	8.959	11.471	5.107	6.893	6.087	4.799	7.888	11.928	8.606	8.599	9.854	7.274	4.335	5.137	2.891	4.416	5.789	3.354	9.426
4101	chr13	48942953	48944621	+	0	NA	intron (NM_001033268, intron 3 of 17)	RSINE1|SINE|B4	24041	NM_001033268	218236	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	2.426	1.298	1.168	nan	2.466	2.740	0.755	1.549	1.260	1.665	0.667	1.103	0.994	1.374	1.115	1.359	0.737	1.498	2.774	nan	1.628	1.274	4.393	4.599	1.926
3850	chr13	13689002	13692528	+	0	NA	intron (NM_010748, intron 29 of 52)	L1Md_F2|LINE|L1	-93294	NM_001302997	14706	Mm.215394	NM_010317	ENSMUSG00000021303	Gng4	-	guanine nucleotide binding protein (G protein), gamma 4	protein-coding	3.574	2.404	1.722	1.520	3.328	2.194	3.901	4.629	2.521	3.306	3.111	1.551	4.642	nan	3.934	2.823	nan	2.914	0.952	0.967	0.723	0.740	1.042	0.748	nan
11890	chr5	140677708	140685660	+	0	NA	intron (NM_001347517, intron 12 of 22)	ZP3AR|Satellite|Satellite	20694	NM_028833	74239	Mm.179704	NM_028833	ENSMUSG00000036555	Iqce	1700028P05Rik|mKIAA1023	IQ motif containing E	protein-coding	5.107	4.828	1.989	3.355	2.180	0.706	6.307	5.572	4.372	5.094	6.432	5.002	4.730	7.036	6.886	5.173	3.813	4.127	5.700	2.317	1.450	4.199	5.259	3.146	5.706
10956	chr4	151481129	151482619	+	0	NA	intron (NM_001081557, intron 4 of 23)	intron (NM_001081557, intron 4 of 23)	379894	NM_001081557	100072	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	4.236	nan	0.093	1.909	1.957	1.082	4.803	6.281	1.917	4.224	3.582	1.081	2.864	8.243	3.441	6.321	3.195	4.226	4.052	0.975	1.334	5.976	2.215	1.373	6.805
14807	chr8	129106479	129126091	+	0	NA	intron (NM_001168369, intron 5 of 14)	Lx10|LINE|L1	49151	NM_001168369	75453	Mm.286964	NM_029292	ENSMUSG00000056018	Ccdc7b	1700008F21Rik	coiled-coil domain containing 7B	protein-coding	12.001	nan	5.566	nan	6.574	4.300	nan	12.508	7.745	12.699	7.844	4.996	10.068	12.243	10.481	12.084	9.950	10.722	5.813	4.432	4.049	nan	4.938	nan	nan
13331	chr7	82753443	82760176	+	0	NA	intron (NM_175317, intron 17 of 19)	B4|SINE|B4	-1165	NR_046004	77800	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	6.103	7.665	2.416	8.329	4.125	1.560	2.851	4.479	5.151	5.142	4.396	2.238	4.183	5.059	5.087	5.694	3.193	7.180	2.542	2.236	1.215	2.669	1.850	1.187	6.231
9130	chr2	181508730	181511898	+	0	NA	intron (NM_001291204, intron 3 of 4)	intron (NM_001291204, intron 3 of 4)	-10171	NM_016775	13002	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	0.791	0.598	0.083	0.775	0.392	0.156	0.473	0.251	1.045	0.557	0.473	0.350	0.279	0.610	0.427	nan	0.825	nan	3.448	1.674	1.221	5.584	2.201	1.800	nan
13097	chr7	31116818	31119975	+	0	NA	intron (NM_011322, intron 3 of 5)	intron (NM_011322, intron 3 of 5)	-3070	NM_001110252	15451	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	2.783	2.083	0.639	1.530	0.530	0.383	3.146	3.620	1.451	1.560	0.474	0.737	3.131	3.332	4.224	3.264	1.542	2.360	3.530	1.952	1.435	3.316	2.762	2.062	4.529
9444	chr3	88325804	88328414	+	0	NA	intron (NM_020003, intron 4 of 5)	intron (NM_020003, intron 4 of 5)	2086	NM_020003	56700	Mm.439922	NM_020003	ENSMUSG00000001418	Glmp	0610031J06Rik|AB027141|NCU-G1	glycosylated lysosomal membrane protein	protein-coding	3.780	1.512	0.668	2.955	3.453	1.800	4.854	4.800	3.458	3.483	3.389	0.970	4.461	5.911	5.300	5.797	3.349	4.432	nan	1.207	1.302	2.225	0.660	0.434	7.442
6866	chr17	75909585	75921496	+	0	NA	Intergenic	Intergenic	54517	NR_033456	100043885	Mm.127562	NR_033456		Gm4710	-	predicted gene 4710	ncRNA	0.392	9.441	6.065	0.805	0.375	0.274	nan	nan	nan	0.604	0.378	0.252	0.170	0.261	0.454	nan	0.598	0.501	0.698	0.905	0.526	0.720	0.567	0.554	0.457
15188	chr9	63863955	63871648	+	0	NA	Intergenic	ORR1C1-int|LTR|ERVL-MaLR	-109807	NM_016769	17127	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	5.555	2.771	0.546	7.469	1.665	1.340	5.894	7.627	5.091	9.328	6.471	3.780	5.398	8.050	8.042	9.471	4.501	8.036	nan	1.012	1.291	2.090	1.214	1.233	14.232
699	chr1	138513281	138514745	+	0	NA	intron (NM_021605, intron 7 of 9)	intron (NM_021605, intron 7 of 9)	105744	NM_021605	59125	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	6.156	2.725	1.976	1.435	1.099	0.498	4.611	3.733	1.238	2.100	0.809	0.280	3.182	3.985	4.372	6.042	5.611	3.058	0.814	1.500	1.135	0.620	0.698	0.658	4.366
960	chr1	182944861	182947629	+	0	NA	Intergenic	Intergenic	-8543	NM_016928	53791	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	12.501	6.073	1.620	8.408	2.050	0.752	4.067	7.249	6.129	6.840	7.694	4.724	5.900	5.636	4.441	15.777	6.472	8.918	4.031	1.456	1.869	6.139	1.906	1.498	16.072
5195	chr15	57964778	57966570	+	0	NA	intron (NM_001081396, intron 19 of 20)	intron (NM_001081396, intron 19 of 20)	-20229	NM_173862	239463	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	6.402	13.254	5.258	6.348	3.438	2.299	6.311	8.891	3.766	4.717	5.130	2.515	6.501	4.655	8.464	8.822	6.915	6.677	5.976	2.367	5.438	7.105	5.108	6.625	10.516
13161	chr7	52070405	52076065	+	0	NA	Intergenic	Intergenic	-57519	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	6.594	10.975	5.094	5.682	5.367	3.777	6.919	11.038	3.870	6.314	4.871	2.718	8.030	8.441	7.237	7.889	7.143	6.906	6.673	4.233	4.193	6.766	6.539	6.049	8.034
818	chr1	164500413	164502210	+	0	NA	Intergenic	MLT1H1|LTR|ERVL-MaLR	-42956	NM_009721	11931	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	9.613	12.685	3.959	8.792	4.883	2.904	6.264	6.966	4.468	9.384	7.186	3.301	6.407	8.154	7.123	11.811	6.624	7.885	5.668	3.028	2.922	6.596	5.000	3.990	11.049
13511	chr7	108213433	108222815	+	0	NA	Intergenic	RMER10B|LTR|ERVL	-5597	NM_001011811	258042	Mm.377337	NM_001011811	ENSMUSG00000095929	Olfr487	MOR204-29P|MOR204-31P|Olfr1538-ps1	olfactory receptor 487	protein-coding	1.231	12.728	5.781	1.365	0.745	0.404	0.744	1.518	0.824	0.965	0.665	0.475	0.702	nan	1.048	nan	0.828	nan	nan	0.664	0.561	0.594	0.782	0.564	1.038
9761	chr3	121749541	121754927	+	0	NA	Intergenic	MMERVK9C_I-int|LTR|ERVK	28697	NM_010171	14066	Mm.273188	NM_010171	ENSMUSG00000028128	F3	AA409063|CD142|Cf-3|Cf3|TF	coagulation factor III	protein-coding	4.220	1.112	0.532	2.610	2.505	1.635	5.223	3.474	2.241	nan	0.906	0.837	4.055	4.842	5.102	6.096	4.777	5.005	0.686	0.684	0.890	0.822	nan	0.549	nan
9660	chr3	105694607	105698267	+	0	NA	Intergenic	Intergenic	-8162	NM_175398	109050	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	7.367	18.258	7.318	7.277	3.915	1.319	3.946	4.391	4.276	4.809	2.850	2.159	4.548	5.232	5.682	5.338	3.820	5.892	2.886	2.986	2.249	3.793	1.582	1.149	8.310
8263	chr2	59123259	59124539	+	0	NA	Intergenic	MER58A|DNA|hAT-Charlie	-36951	NM_026361	227937	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	3.324	1.537	0.210	2.906	1.053	0.610	1.228	3.382	3.226	3.621	1.514	1.376	2.388	3.397	2.134	2.417	2.819	4.843	0.800	0.314	0.433	1.265	0.694	0.390	3.412
10410	chr4	116795133	116800509	+	0	NA	intron (NM_146151, intron 5 of 10)	ID4_|SINE|ID	9738	NM_026654	68276	Mm.30534	NM_026654	ENSMUSG00000028688	Toe1	4930584N22Rik|4933424D16Rik|AI413517	target of EGR1, member 1 (nuclear)	protein-coding	7.480	16.649	4.374	8.954	5.628	3.212	4.164	6.907	4.332	5.592	6.671	3.909	3.346	6.558	5.385	nan	3.142	5.860	1.618	2.159	1.880	2.767	0.957	0.631	6.429
2908	chr11	106599367	106602339	+	0	NA	intron (NM_198292, intron 1 of 11)	intron (NM_198292, intron 1 of 11)	12077	NM_198292	21763	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	2.280	6.537	5.204	2.857	2.101	2.602	0.830	1.460	nan	nan	1.082	1.355	0.523	nan	1.210	1.423	1.339	nan	0.920	1.851	2.137	nan	1.010	1.008	1.172
12613	chr6	114917314	114920698	+	0	NA	intron (NM_177683, intron 1 of 4)	intron (NM_177683, intron 1 of 4)	2746	NM_177683	232334	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	6.211	7.251	3.545	6.386	4.045	3.204	9.920	10.040	3.987	7.438	6.455	3.649	8.002	10.572	7.870	10.869	9.263	7.026	6.112	3.576	4.154	6.947	5.132	4.848	12.377
9516	chr3	94750864	94754389	+	0	NA	Intergenic	Intergenic	33889	NM_001293727	70737	Mm.87634	NM_001037711	ENSMUSG00000068876	Cgn	6330408J11Rik	cingulin	protein-coding	1.987	1.723	2.244	2.122	4.883	4.845	2.151	2.835	2.260	1.793	nan	1.279	2.219	2.854	1.607	nan	2.204	2.612	1.133	1.338	2.115	0.794	1.631	2.018	1.339
4483	chr14	17789783	17794924	+	0	NA	intron (NM_001113417, intron 1 of 9)	L1_Mus1|LINE|L1	131393	NM_001113417	21834	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	5.387	0.466	0.443	2.434	1.913	1.119	3.841	7.213	nan	1.917	1.135	0.939	4.167	5.936	4.644	5.879	3.335	4.678	1.429	1.267	0.751	nan	1.036	0.829	4.999
15821	chrX	137061946	137064562	+	0	NA	intron (NM_146261, intron 2 of 5)	intron (NM_146261, intron 2 of 5)	13660	NM_146261	245622	Mm.260106	NM_146261	ENSMUSG00000042595	Fam199x	-	family with sequence similarity 199, X-linked	protein-coding	4.364	1.359	0.987	3.449	4.116	2.054	1.208	2.778	2.491	3.981	3.812	1.326	2.108	3.857	1.595	2.229	1.978	3.066	0.658	0.645	1.043	0.918	0.591	0.594	1.958
11886	chr5	140352561	140355965	+	0	NA	intron (NM_172277, intron 4 of 10)	intron (NM_172277, intron 4 of 10)	22341	NM_008637	17766	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	3.814	0.524	0.568	3.052	2.751	1.505	5.767	1.167	3.638	5.410	0.968	0.558	4.644	5.360	3.911	5.675	4.890	4.496	0.800	0.418	0.398	0.531	nan	0.263	4.172
5291	chr15	72919568	72921843	+	0	NA	intron (NM_029640, intron 15 of 21)	intron (NM_029640, intron 15 of 21)	-110381	NR_002864	353342	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	9.992	12.779	4.473	9.412	4.412	2.472	9.570	11.363	6.130	9.808	5.844	4.657	10.402	9.343	10.175	10.322	8.312	9.815	6.700	3.444	3.287	6.950	5.071	3.790	11.782
4758	chr14	64478545	64480113	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-23426	NM_026322	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	7.019	7.597	2.181	6.261	2.922	2.066	4.120	5.369	3.088	4.007	4.369	3.122	3.895	4.838	5.999	7.789	4.027	5.942	3.108	nan	1.840	3.010	2.664	2.812	10.246
12806	chr6	136593843	136596455	+	0	NA	intron (NM_019426, intron 10 of 14)	intron (NM_019426, intron 10 of 14)	66744	NM_025806	66857	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	2.441	0.667	0.498	0.868	1.270	0.690	4.034	6.221	1.114	1.418	0.740	0.453	4.788	3.824	4.092	6.020	4.999	2.702	nan	0.573	0.498	0.594	0.351	0.298	3.111
7070	chr18	23654936	23657239	+	0	NA	3' UTR (NM_207650, exon 21 of 21)	3' UTR (NM_207650, exon 21 of 21)	96218	NR_126066	100502834	Mm.213614	NR_126066	ENSMUSG00000086287	Gm15972	OTTMUSG00000028454	predicted gene 15972	ncRNA	5.019	0.499	0.522	3.004	2.813	0.905	3.643	6.062	1.306	2.347	0.530	0.212	5.357	5.246	2.671	2.492	3.106	3.536	nan	2.876	1.810	4.614	2.283	1.127	3.462
14593	chr8	111381991	111383806	+	0	NA	intron (NM_178086, intron 1 of 6)	B1_Mm|SINE|Alu	10923	NM_178086	338521	Mm.41083	NM_178086	ENSMUSG00000033579	Fa2h	FAAH|Faxdc1|G630055L08Rik	fatty acid 2-hydroxylase	protein-coding	4.338	0.446	0.864	2.179	2.546	2.170	2.937	6.724	1.640	2.174	0.800	0.493	2.506	4.463	1.973	3.115	4.024	2.209	0.676	0.740	0.878	nan	0.666	0.471	4.340
3288	chr12	36557435	36562146	+	0	NA	intron (NM_178629, intron 9 of 9)	intron (NM_178629, intron 9 of 9)	144174	NR_037309	100499526		NR_037309	ENSMUSG00000092917	Mir3472	mmu-mir-3472	microRNA 3472	ncRNA	10.189	nan	0.561	3.519	3.455	1.218	7.818	6.055	6.031	6.781	7.814	4.469	8.701	9.299	8.162	7.273	6.988	7.821	nan	0.905	0.317	0.733	0.521	0.262	8.198
6124	chr16	52417866	52419071	+	0	NA	intron (NM_009655, intron 1 of 15)	intron (NM_009655, intron 1 of 15)	34613	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	6.173	4.221	2.578	2.689	3.294	1.096	2.125	7.115	2.824	3.674	2.614	3.148	3.109	4.316	2.813	3.959	2.313	4.338	1.179	1.139	0.020	1.188	1.356	0.215	2.071
12824	chr6	142286840	142290532	+	0	NA	intron (NM_130861, intron 1 of 14)	L1MC4|LINE|L1	-9739	NM_010491	15874	Mm.415	NM_010491	ENSMUSG00000041681	Iapp	DAP	islet amyloid polypeptide	protein-coding	0.588	1.541	1.190	0.790	0.466	0.334	0.510	0.604	0.933	0.497	9.323	5.130	0.470	0.543	nan	0.860	0.925	0.450	nan	0.603	0.454	0.962	1.134	0.647	nan
11080	chr5	25003398	25006004	+	0	NA	intron (NM_145401, intron 3 of 15)	intron (NM_145401, intron 3 of 15)	-8948	NM_001310480	108099	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	8.603	13.085	3.510	12.972	3.990	3.545	7.745	8.577	5.583	19.348	7.177	4.207	7.252	10.953	11.308	12.457	5.781	10.723	5.730	2.406	3.130	7.846	4.041	7.077	17.833
2527	chr11	79531915	79533819	+	0	NA	intron (NM_010897, intron 36 of 57)	B1_Mus1|SINE|Alu	-2258	NM_010161	14017	Mm.439665	NM_010161	ENSMUSG00000078771	Evi2a	AW491894|Evi-2|Evi2	ecotropic viral integration site 2a	protein-coding	nan	1.620	1.145	3.106	1.794	1.757	nan	1.076	2.497	3.718	0.953	0.952	1.564	4.900	nan	2.570	1.011	1.598	0.901	0.509	nan	0.801	0.466	0.150	1.950
6581	chr17	35137807	35140961	+	0	NA	intron (NM_057171, intron 6 of 24)	intron (NM_057171, intron 6 of 24)	3670	NM_001252469	224727	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	10.052	22.163	7.621	7.350	4.711	2.639	10.531	5.409	3.292	8.479	5.118	2.655	8.091	10.258	7.383	8.141	6.014	7.991	6.326	4.574	4.517	7.428	4.457	4.404	13.642
6974	chr18	3557221	3559135	+	0	NA	Intergenic	Intergenic	50221	NM_026505	68010	Mm.284863	NM_026505	ENSMUSG00000024232	Bambi	2610003H06Rik	BMP and activin membrane-bound inhibitor	protein-coding	4.309	0.489	0.414	1.054	1.063	0.947	2.175	2.585	2.773	2.969	0.436	0.398	3.767	4.105	2.975	3.828	3.607	3.089	0.658	0.451	0.320	0.489	1.422	0.899	4.061
11634	chr5	118531155	118536273	+	0	NA	Intergenic	ID_B1|SINE|B4	-27005	NM_001347445	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	2.195	4.285	1.510	2.259	1.408	0.508	2.874	0.618	1.157	1.326	0.967	0.550	1.208	2.183	2.336	2.153	1.300	2.533	nan	nan	1.249	4.679	nan	1.578	4.088
8987	chr2	165693525	165694871	+	0	NA	intron (NM_001271962, intron 5 of 15)	(TCG)n|Simple_repeat|Simple_repeat	38900	NM_010165	14049	Mm.282719	NM_010165	ENSMUSG00000017897	Eya2	Eab1	EYA transcriptional coactivator and phosphatase 2	protein-coding	4.263	2.111	0.677	6.612	1.628	0.763	1.647	4.956	2.952	3.323	4.098	1.879	1.388	3.394	2.611	3.888	2.468	3.429	nan	1.911	0.728	2.330	1.613	1.078	4.430
1346	chr10	61177402	61179259	+	0	NA	intron (NM_001017409, intron 2 of 3)	intron (NM_001017409, intron 2 of 3)	3068	NM_023064	65971	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	5.538	1.781	1.214	4.269	5.660	2.856	2.922	4.195	2.168	3.006	2.759	1.368	2.206	4.956	2.951	3.976	3.082	2.848	nan	2.081	3.043	2.187	2.719	2.749	4.478
8004	chr2	24239385	24242688	+	0	NA	Intergenic	L1Md_T|LINE|L1	25619	NM_019450	54448	Mm.133095	NM_019450	ENSMUSG00000026984	Il1f6	Fil1|IL-1H1|IL1RP2|Il1f9|Il36a	interleukin 1 family, member 6	protein-coding	6.803	15.577	7.247	4.960	4.825	2.849	3.880	4.452	nan	3.231	3.831	1.352	3.716	5.108	4.807	4.926	3.289	4.025	0.999	2.042	0.779	0.648	0.992	0.434	6.204
15032	chr9	45177228	45180838	+	0	NA	intron (NM_145403, intron 7 of 12)	ORR1F|LTR|ERVL-MaLR	-16733	NM_001198971	408059	Mm.249297	NM_001198971	ENSMUSG00000091996	BC049352	-	cDNA sequence BC049352	protein-coding	1.171	0.813	0.469	1.178	0.616	0.418	0.353	0.652	0.510	1.060	0.813	0.584	0.317	0.685	nan	nan	0.497	0.752	4.186	3.512	2.718	nan	7.333	5.470	nan
12424	chr6	88873975	88878769	+	0	NA	Intergenic	MYSERV16_I-int|LTR|ERVK	-1328	NM_001347327	319655	Mm.302613	NM_176973	ENSMUSG00000033152	Podxl2	D130074J02Rik|PODLX2	podocalyxin-like 2	protein-coding	4.602	1.995	0.682	5.833	2.003	0.795	4.378	4.500	2.833	3.864	1.650	1.325	6.009	7.548	4.564	6.778	3.467	6.329	nan	0.968	0.449	1.285	2.268	2.220	8.375
15601	chr9	120821146	120825443	+	0	NA	Intergenic	B3|SINE|B2	91956	NR_040742	76402	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	5.353	0.923	0.607	4.154	2.687	1.644	6.589	3.488	4.218	4.480	2.354	1.750	4.805	7.646	5.390	6.181	3.337	5.823	0.605	0.801	0.392	0.619	nan	0.425	6.179
14310	chr8	73218075	73227406	+	0	NA	intron (NM_010687, intron 1 of 14)	MTD|LTR|ERVL-MaLR	130800	NM_001317391	16795	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	9.702	12.543	5.483	10.678	7.898	5.915	8.071	nan	nan	11.224	6.478	4.170	10.660	12.368	9.892	nan	9.660	8.845	4.723	3.563	4.201	nan	4.030	4.451	nan
12073	chr6	17418435	17419716	+	0	NA	Intergenic	Intergenic	-44882	NM_008591	17295	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	3.265	nan	0.311	2.511	3.889	1.155	2.188	6.779	2.304	2.591	3.179	1.260	7.150	4.415	4.867	9.133	7.033	4.393	0.591	0.916	0.425	0.850	0.677	0.076	3.189
10395	chr4	115610626	115613179	+	0	NA	intron (NM_001100181, intron 9 of 12)	intron (NM_001100181, intron 9 of 12)	10964	NM_001100181	100040843	Mm.482683	NM_001100181	ENSMUSG00000063929	Cyp4a32	OTTMUSG00000008689	cytochrome P450, family 4, subfamily a, polypeptide 32	protein-coding	0.248	0.430	0.275	0.361	0.225	0.258	0.343	0.317	0.207	0.424	0.127	0.118	0.151	0.279	0.222	nan	0.398	0.283	1.177	4.960	4.156	6.879	0.247	0.252	0.554
10156	chr4	62296624	62300222	+	0	NA	TTS (NM_025286)	TTS (NM_025286)	6876	NM_001290518	20530	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	5.863	6.500	2.306	3.452	6.042	3.962	6.059	5.554	4.983	5.000	4.402	3.101	6.634	7.360	4.891	5.729	4.118	5.515	nan	1.758	1.521	1.838	1.804	1.623	6.333
2818	chr11	101843705	101846662	+	0	NA	Intergenic	RMER19B|LTR|ERVK	49171	NM_010791	17285	Mm.3404	NM_010791	ENSMUSG00000001493	Meox1	AI385561|D330041M02Rik|Mox-1|Mox1	mesenchyme homeobox 1	protein-coding	6.333	4.175	1.144	8.875	2.863	1.364	1.968	2.989	3.505	5.865	1.706	1.263	2.602	4.368	4.779	6.090	nan	5.841	2.278	nan	0.726	3.075	nan	nan	7.371
7356	chr18	68449830	68451037	+	0	NA	Intergenic	Intergenic	-21113	NM_001271716	17200	Mm.426053	NM_008560	ENSMUSG00000045569	Mc2r	ACTH-R|ACTHR|MC2-R	melanocortin 2 receptor	protein-coding	4.914	0.737	0.128	3.099	2.069	1.057	4.011	5.286	3.396	3.672	1.070	0.637	5.141	3.850	2.792	5.083	4.695	4.734	1.016	0.647	0.403	1.800	0.884	0.223	4.243
2424	chr11	72308900	72311098	+	0	NA	intron (NM_001037713, intron 5 of 5)	intron (NM_001037713, intron 5 of 5)	-4445	NM_001099688	628100	Mm.390365	NM_001099688	ENSMUSG00000070388	Fbxo39	1700010H23Rik	F-box protein 39	protein-coding	1.744	0.616	0.216	1.530	1.113	0.282	1.842	3.118	1.639	2.192	4.481	1.896	1.876	4.353	2.488	2.530	2.098	2.017	1.046	0.377	0.167	0.968	nan	0.452	2.945
3471	chr12	78256604	78260339	+	0	NA	intron (NM_145965, intron 1 of 22)	intron (NM_145965, intron 1 of 22)	31816	NM_145965	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	3.320	3.144	1.775	1.953	1.617	0.954	3.135	1.333	3.273	3.178	1.192	1.225	4.515	nan	3.033	5.389	2.993	3.357	2.957	1.126	0.881	1.709	3.369	2.164	3.259
891	chr1	173573852	173579989	+	0	NA	Intergenic	IAPEY3-int|LTR|ERVK	22354	NM_001177349	623121	Mm.138449	NM_001033384	ENSMUSG00000073491	Ifi213	E030037K03Rik|E430029J22Rik|Pydc4|Pyr-A	interferon activated gene 213	protein-coding	0.998	9.877	5.345	0.788	0.367	0.161	0.334	0.379	0.605	0.520	0.239	0.113	0.244	nan	0.435	0.802	1.078	0.715	0.650	0.939	0.684	0.216	0.361	0.311	0.682
8730	chr2	142726224	142729479	+	0	NA	intron (NM_001081133, intron 17 of 25)	L1_Mus4|LINE|L1	173613	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	6.913	6.332	2.084	5.930	1.763	1.369	5.125	7.344	3.943	4.585	4.175	2.960	6.791	5.682	7.081	9.018	5.971	6.256	4.355	1.303	1.479	4.090	2.440	2.253	9.709
2106	chr11	44470793	44480027	+	0	NA	Intergenic	Intergenic	-4862	NM_024475	79560	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	0.556	9.384	5.402	0.639	0.251	0.152	0.294	nan	0.501	0.578	0.219	0.241	0.149	0.376	0.310	nan	0.389	nan	nan	0.538	0.366	nan	nan	0.132	0.372
9607	chr3	101335759	101338728	+	0	NA	Intergenic	Intergenic	-39882	NM_207205	78908	Mm.257997	NM_207205	ENSMUSG00000042035	Igsf3	1700016K10Rik|2810035F16Rik|4833439O17Rik|mKIAA0466	immunoglobulin superfamily, member 3	protein-coding	0.745	0.626	0.348	0.799	0.576	0.329	1.737	1.727	1.128	0.990	nan	1.037	1.421	1.378	1.316	nan	1.100	1.892	2.174	1.651	1.133	4.444	1.463	1.117	1.601
13820	chr7	139536581	139540002	+	0	NA	intron (NM_183144, intron 9 of 15)	intron (NM_183144, intron 9 of 15)	44506	NM_183248	14912	Mm.28308	NM_183248	ENSMUSG00000041309	Nkx6-2	Gtx|Nkx6.2	NK6 homeobox 2	protein-coding	5.485	1.915	0.683	3.859	3.625	2.116	5.483	2.696	3.784	4.179	1.125	0.754	5.517	6.225	5.214	2.770	1.150	6.452	0.525	0.693	0.322	0.612	0.335	0.363	6.102
10927	chr4	150076563	150086444	+	0	NA	Intergenic	ORR1A2|LTR|ERVL-MaLR	-6000	NM_177366	269604	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	3.895	nan	0.690	4.159	6.141	3.260	3.071	6.296	4.517	5.359	3.761	5.142	2.390	5.320	3.439	3.065	1.916	4.380	1.990	1.174	1.160	3.599	0.934	0.552	3.686
8233	chr2	49305649	49308173	+	0	NA	intron (NM_029924, intron 15 of 16)	L1VL2|LINE|L1	61011	NM_001290656	109241	Mm.440436	NM_029924	ENSMUSG00000036792	Mbd5	9430004D19Rik|AA536666|AI426407|C030040A15Rik|Gm1630|OTTMUSG00000012483	methyl-CpG binding domain protein 5	protein-coding	8.263	12.715	3.581	10.547	4.569	3.350	7.309	9.598	5.975	15.016	6.325	4.032	9.628	9.078	9.393	10.842	6.598	9.078	5.879	1.445	4.401	6.360	4.498	8.361	16.815
15218	chr9	65952018	65954583	+	0	NA	intron (NM_173185, intron 2 of 13)	intron (NM_173185, intron 2 of 13)	44290	NM_173185	214897	Mm.325816	NM_173185	ENSMUSG00000032384	Csnk1g1	9130020E21Rik	casein kinase 1, gamma 1	protein-coding	3.666	1.744	0.615	1.686	1.085	0.433	1.896	1.692	2.632	3.160	1.753	0.695	3.982	4.207	2.610	3.217	2.062	4.557	nan	0.393	0.334	0.771	0.383	0.212	4.296
14084	chr8	25547296	25550327	+	0	NA	non-coding (NR_110510, exon 5 of 5)	non-coding (NR_110510, exon 5 of 5)	7272	NR_110510	102633315	Mm.437828	NR_110510	ENSMUSG00000086134	Gm16159	OTTMUSG00000031030	predicted gene 16159	ncRNA	4.898	nan	0.937	6.030	1.262	1.159	5.210	1.643	3.670	3.340	9.330	6.784	2.811	5.348	7.383	3.330	2.071	4.174	0.754	1.080	0.809	nan	0.265	0.471	2.730
7538	chr19	9099990	9105028	+	0	NA	Intergenic	Intergenic	-14553	NM_011681	22287	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	5.364	2.130	0.913	3.509	2.318	1.114	3.503	7.248	nan	2.091	2.189	1.706	2.323	4.843	3.409	nan	5.367	5.249	0.397	0.693	0.322	1.346	0.579	0.390	8.095
10034	chr4	44993849	44996285	+	0	NA	exon (NM_001163284, exon 2 of 2)	exon (NM_001163284, exon 2 of 2)	13673	NM_001312880	76238	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding	6.041	8.422	2.231	6.435	3.742	2.085	5.895	7.368	4.401	7.182	4.361	3.297	6.173	8.384	6.615	8.419	2.956	6.813	4.549	1.910	2.435	5.696	1.950	2.441	11.896
8247	chr2	52813984	52815287	+	0	NA	Intergenic	Intergenic	-43233	NM_172409	71409	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	4.095	1.799	0.430	2.804	1.667	0.576	2.552	4.433	2.998	2.793	5.253	3.022	1.573	3.301	2.351	1.989	1.620	2.690	0.732	1.508	0.460	1.361	0.549	0.209	2.388
13784	chr7	135517414	135524035	+	0	NA	intron (NM_178669, intron 1 of 2)	intron (NM_178669, intron 1 of 2)	7930	NM_178669	212070	Mm.39721	NM_178669	ENSMUSG00000050866	Clrn3	AI649392|Tmem12	clarin 3	protein-coding	2.961	5.542	2.782	3.385	2.881	2.284	3.075	1.546	5.888	5.798	1.035	0.757	4.516	4.216	3.526	5.557	3.709	5.536	1.155	0.835	0.787	0.562	0.427	0.459	3.422
11423	chr5	91500383	91507303	+	0	NA	Intergenic	Intergenic	-13857	NM_145562	231440	Mm.5002	NM_145562	ENSMUSG00000034981	Parm1	2210012L08Rik|9130213B05Rik|W91666	prostate androgen-regulated mucin-like protein 1	protein-coding	2.369	0.517	0.454	2.268	3.053	1.986	5.686	2.691	5.618	6.202	5.985	6.067	4.074	6.692	6.157	3.956	1.544	5.960	0.572	0.422	0.527	0.455	0.487	0.259	3.450
10322	chr4	102189467	102190569	+	0	NA	Intergenic	Intergenic	-64724	NM_001177983	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	5.114	7.318	4.124	3.054	2.302	1.509	1.636	1.719	3.873	3.644	5.061	2.509	2.052	3.448	nan	2.465	1.677	2.695	1.082	3.612	1.722	nan	0.780	0.455	2.438
1738	chr10	111379371	111380812	+	0	NA	Intergenic	Tigger1|DNA|TcMar-Tigger	81412	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	4.336	0.849	0.194	2.176	2.847	0.768	1.232	1.482	2.679	3.132	0.612	0.929	3.141	3.359	3.255	3.528	2.711	3.924	0.487	1.021	0.412	0.688	0.479	0.131	3.164
2025	chr11	21313727	21315845	+	0	NA	intron (NM_139061, intron 20 of 22)	intron (NM_139061, intron 20 of 22)	29889	NR_035454	100316753		NR_035454	ENSMUSG00000089555	Mir1933	mir-1933|mmu-mir-1933	microRNA 1933	ncRNA	5.398	nan	0.693	4.242	2.083	0.909	4.970	5.429	2.992	2.713	0.865	1.380	5.252	5.056	6.046	6.973	7.834	5.206	0.631	0.838	0.295	0.899	0.645	0.516	3.194
13944	chr7	151652682	151657310	+	0	NA	Intergenic	Intergenic	6340161	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	8.509	nan	1.038	nan	9.110	5.609	11.940	12.998	3.440	5.312	6.530	3.707	6.232	10.671	5.324	5.907	7.302	4.742	2.926	4.256	3.368	2.225	nan	4.231	8.412
10834	chr4	141602697	141603893	+	0	NA	intron (NM_133754, intron 1 of 8)	MTC|LTR|ERVL-MaLR	2757	NM_133754	74202	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	3.370	1.538	0.916	2.580	2.695	1.204	3.529	4.684	2.782	1.521	2.866	1.601	3.281	3.676	2.686	3.908	1.672	3.488	1.221	1.306	0.232	1.052	nan	0.985	4.011
7820	chr19	46378280	46380710	+	0	NA	intron (NM_016860, intron 8 of 10)	(A)n|Simple_repeat|Simple_repeat	16240	NM_016860	54130	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding	8.761	18.100	5.971	12.999	5.155	2.813	7.995	10.888	5.063	8.277	9.103	3.953	6.170	9.034	9.087	12.233	7.441	8.663	1.899	2.054	1.668	3.912	2.149	2.107	15.906
3920	chr13	30350754	30352361	+	0	NA	intron (NM_177322, intron 2 of 2)	PB1D10|SINE|Alu	15201	NM_177322	11607	Mm.35062	NM_177322	ENSMUSG00000049115	Agtr1a	1810074K20Rik|AG2S|AI551199|AT1|AT1a|AT2R1|AT2R1A|Agtr-1a|Agtr1|Angtr-1a	angiotensin II receptor, type 1a	protein-coding	2.392	0.654	0.392	0.724	0.860	1.073	2.620	1.759	1.306	1.903	1.289	1.257	2.778	3.583	2.905	2.842	2.352	1.785	1.275	0.952	0.915	1.040	0.416	0.896	2.565
5842	chr16	17890720	17893240	+	0	NA	promoter-TSS (NM_001109750)	promoter-TSS (NM_001109750)	-252	NM_001109750	13356	Mm.254515	NM_010048	ENSMUSG00000003166	Dgcr2	9930034O06Rik|DGS-C|Dgsc|Idd|Lan|Sez12|mKIAA0163	DiGeorge syndrome critical region gene 2	protein-coding	6.262	7.266	1.695	6.907	3.957	2.603	6.407	9.651	3.512	nan	3.853	1.898	7.469	7.722	6.574	10.691	5.183	7.284	3.740	2.551	3.124	6.227	2.772	3.378	12.206
8513	chr2	104419410	104422832	+	0	NA	Intergenic	Intergenic	7819	NR_035432	100316678		NR_035432	ENSMUSG00000084516	Mir1902	Mirn1902|mmu-mir-1902	microRNA 1902	ncRNA	8.248	6.953	3.059	3.161	2.141	1.604	4.085	5.495	2.363	2.961	0.818	0.750	4.736	6.790	3.972	3.665	4.699	4.875	1.204	0.986	0.766	nan	0.836	0.777	6.892
12367	chr6	85086998	85089346	+	0	NA	Intergenic	B3|SINE|B2	12031	NR_002702	108176	Mm.431982	NR_002702		Npm3-ps1	-	nucleoplasmin 3, pseudogene 1	pseudo	6.132	5.848	2.116	7.422	1.784	1.886	8.250	8.678	4.376	7.275	3.160	2.722	8.379	9.063	9.521	10.799	7.184	7.117	nan	1.386	1.040	3.064	1.057	1.774	10.195
12755	chr6	131331881	131335352	+	0	NA	Intergenic	MYSERV-int|LTR|ERVK	-19789	NM_172891	243659	Mm.20114	NM_172891	ENSMUSG00000032899	Styk1	9130025L13|AI326477|Nok	serine/threonine/tyrosine kinase 1	protein-coding	4.719	1.577	1.047	4.287	3.121	1.134	4.256	6.761	3.763	3.744	5.307	4.614	4.017	6.409	4.160	3.973	3.292	4.533	2.625	2.233	0.841	1.850	3.205	1.484	2.602
11644	chr5	119503823	119508548	+	0	NA	Intergenic	Intergenic	74173	NR_045702	100993	Mm.381453	NR_045702	ENSMUSG00000087516	AW549542	-	expressed sequence AW549542	ncRNA	0.992	0.456	0.201	1.385	0.841	0.446	0.395	0.383	0.797	0.593	0.491	0.440	0.141	0.382	0.541	1.012	0.547	1.227	nan	nan	2.459	4.420	nan	2.310	0.912
11227	chr5	53131729	53149209	+	0	NA	intron (NM_172710, intron 13 of 23)	intron (NM_172710, intron 13 of 23)	72983	NM_172710	231238	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	5.673	0.937	0.419	5.664	3.774	1.784	5.025	3.443	7.433	10.031	1.481	1.888	7.461	8.297	7.299	nan	6.223	10.222	1.120	1.150	0.813	0.998	0.795	0.798	6.194
6645	chr17	44903704	44905272	+	0	NA	intron (NM_178652, intron 2 of 11)	RLTR18B|LTR|ERVK	-23603	NM_029257	75341	Mm.386821	NM_029257		4930564C03Rik	-	RIKEN cDNA 4930564C03 gene	protein-coding	2.779	1.710	1.057	1.363	2.360	0.910	4.639	1.104	2.956	2.490	3.500	3.877	4.002	4.616	2.760	4.049	2.827	3.748	0.832	0.331	0.060	0.226	0.221	0.123	1.534
511	chr1	120523563	120527191	+	0	NA	Intergenic	ORR1A4|LTR|ERVL-MaLR	-20293	NM_010766	17167	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	3.461	1.158	0.544	4.057	2.582	1.108	5.807	3.505	4.089	4.985	1.090	1.600	6.491	7.122	4.906	9.306	6.280	5.297	2.848	1.330	0.762	3.075	2.641	1.897	5.753
13861	chr7	146108261	146113858	+	0	NA	Intergenic	Intergenic	796224	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	nan	nan	0.884	nan	6.949	5.323	3.555	6.780	nan	4.276	1.866	1.758	4.475	6.756	4.559	4.052	3.903	5.258	1.646	2.063	1.784	2.674	nan	1.547	nan
13625	chr7	119782670	119784740	+	0	NA	TTS (NM_027698)	TTS (NM_027698)	10353	NM_027698	71151	Mm.274160	NM_027698	ENSMUSG00000030929	Eri2	4933424N09Rik|Exod1|mKIAA1504	exoribonuclease 2	protein-coding	1.923	0.455	0.570	1.921	3.837	3.159	2.045	3.383	2.812	2.752	0.848	0.883	2.734	4.751	1.829	1.669	1.473	2.467	0.704	0.755	0.237	1.022	0.537	0.510	1.086
9119	chr2	181099422	181101607	+	0	NA	intron (NM_001003824, intron 9 of 16)	intron (NM_001003824, intron 9 of 16)	34775	NM_001006668	16536	Mm.40615	NM_010611	ENSMUSG00000016346	Kcnq2	HNSPC|KQT2|Nmf134	potassium voltage-gated channel, subfamily Q, member 2	protein-coding	9.088	13.090	3.666	11.070	5.375	3.598	8.585	10.438	5.344	9.844	7.273	4.468	9.044	10.174	9.487	13.625	8.283	9.868	5.566	3.540	3.023	6.969	3.794	4.764	18.751
2367	chr11	69226719	69234640	+	0	NA	intron (NM_008192, intron 7 of 18)	MER45A|DNA|hAT-Tip100	6343	NM_008192	14919	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	8.707	3.665	1.371	6.683	4.035	1.805	7.368	8.827	3.791	7.267	7.346	3.386	5.505	8.352	6.399	9.117	6.414	6.081	5.376	4.163	3.157	4.921	nan	3.049	9.391
899	chr1	174429359	174435544	+	0	NA	Intergenic	MTA_Mm|LTR|ERVL-MaLR	2021	NM_146761	258756	Mm.223188	NM_146761	ENSMUSG00000051509	Olfr414	MOR103-10	olfactory receptor 414	protein-coding	11.809	7.819	2.536	10.269	4.929	2.847	8.902	8.361	5.476	8.141	5.669	3.524	8.557	10.582	9.297	15.122	8.194	9.138	5.106	3.064	2.491	5.896	3.729	2.763	14.052
15507	chr9	108693965	108695223	+	0	NA	intron (NM_008924, intron 1 of 10)	B2_Mm2|SINE|B2	2451	NM_008924	19087	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	2.342	3.117	1.766	1.799	2.240	1.276	1.385	3.001	2.161	2.244	1.267	0.875	1.434	3.765	1.678	1.830	1.253	2.670	1.871	2.584	1.025	1.955	1.823	0.949	nan
2689	chr11	95694997	95700323	+	0	NA	Intergenic	Intergenic	15094	NR_045780	432396	Mm.426849	NR_045780	ENSMUSG00000086191	Zfp652os	1110035M17Rik	zinc finger protein 652, opposite strand	ncRNA	6.825	7.846	3.370	5.154	3.015	2.180	2.010	2.763	3.188	4.546	2.756	1.878	1.624	4.018	2.590	3.494	2.730	4.026	0.912	nan	1.590	0.771	nan	nan	4.873
9106	chr2	180006827	180013979	+	0	NA	Intergenic	L1MB7|LINE|L1	-14584	NM_177727	241846	Mm.21577	NM_177727	ENSMUSG00000039108	Lsm14b	9430078B04|BC040823	LSM family member 14B	protein-coding	3.690	4.376	1.358	4.027	2.601	1.799	3.647	6.492	3.745	4.587	5.122	4.159	3.657	3.744	3.925	5.045	2.833	4.653	2.655	1.518	1.659	4.335	2.410	2.422	nan
3765	chr12	113915217	113918020	+	0	NA	Intergenic	Lx2|LINE|L1	372710	NM_174885	238406	Mm.188683	NM_174885	ENSMUSG00000043945	Adam6a	Adam6|tMDCIV	a disintegrin and metallopeptidase domain 6A	protein-coding	5.228	5.581	1.532	8.403	2.448	1.432	5.748	5.536	3.588	10.413	4.156	2.858	7.484	6.316	8.392	8.996	4.573	6.965	3.095	1.068	1.861	5.030	1.654	2.972	16.477
10769	chr4	138172804	138175695	+	0	NA	intron (NM_172703, intron 21 of 34)	L1_Mus4|LINE|L1	11040	NR_105825	102466907		NR_105825	ENSMUSG00000098513	Mir6399	Gm27667|mir-6399|mmu-mir-6399	microRNA 6399	ncRNA	nan	0.443	0.395	0.298	0.296	0.017	0.392	0.174	nan	0.213	0.063	0.023	0.134	0.236	0.134	0.455	0.237	nan	5.737	5.218	3.061	6.306	9.337	4.827	0.393
5924	chr16	24093922	24095383	+	0	NA	Intergenic	L3|LINE|CR1	-106040	NM_009744	12053	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	1.602	1.998	0.449	1.232	1.002	0.199	2.665	2.810	1.715	1.900	3.650	2.432	4.718	3.875	4.101	4.274	1.304	2.600	0.650	0.413	0.237	0.953	nan	0.064	3.069
15665	chrX	7460588	7461971	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-38291	NR_027924	68355	Mm.45111	NR_027924		2010204K13Rik	0610010M13Rik|Cip7	RIKEN cDNA 2010204K13 gene	ncRNA	4.696	4.582	2.224	3.107	2.973	1.404	3.481	4.920	1.954	3.491	2.360	1.518	2.872	4.796	3.230	4.053	4.141	2.672	2.647	2.876	0.968	1.881	3.949	2.395	5.053
11855	chr5	138145175	138149813	+	0	NA	intron (NM_019747, intron 4 of 4)	B2_Mm1t|SINE|B2	8250	NM_019747	56314	Mm.19274	NM_019747	ENSMUSG00000037007	Zfp113	4732456B05Rik|mKIAA4229	zinc finger protein 113	protein-coding	4.450	3.057	0.816	3.760	3.773	3.506	3.481	4.807	3.505	4.595	3.066	3.249	3.826	5.823	4.856	3.850	3.668	4.316	2.760	2.569	3.227	4.722	nan	2.522	4.788
11758	chr5	130666708	130669347	+	0	NA	intron (NM_021371, intron 3 of 5)	ID_B1|SINE|B4	219235	NM_021371	140904	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	5.396	1.366	0.965	4.931	3.386	3.640	5.877	5.648	5.029	4.539	2.463	2.809	6.460	6.857	5.855	6.572	4.150	6.645	nan	1.104	0.687	0.825	nan	0.637	4.736
10785	chr4	138740281	138756446	+	0	NA	Intergenic	Intergenic	9235	NM_012045	26971	Mm.331989	NM_012045	ENSMUSG00000028749	Pla2g2f	-	phospholipase A2, group IIF	protein-coding	nan	5.299	1.850	5.860	4.669	3.037	3.164	3.658	nan	4.359	3.227	2.166	2.343	4.933	3.843	3.816	1.789	nan	2.078	1.669	1.199	2.580	nan	1.405	5.321
12328	chr6	72545633	72593379	+	0	NA	intron (NM_144917, intron 10 of 12)	intron (NM_144917, intron 10 of 12)	19859	NM_001271395	12332	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	5.716	1.797	0.980	3.536	3.597	2.594	10.328	7.769	4.485	5.126	1.816	1.771	10.254	9.785	7.975	10.385	8.906	6.042	2.204	1.949	1.680	2.149	2.531	2.048	7.085
10325	chr4	102277859	102282588	+	0	NA	intron (NM_019840, intron 1 of 14)	B3|SINE|B2	25284	NM_019840	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	7.955	nan	1.347	2.448	1.357	0.733	1.963	3.622	nan	7.744	6.392	3.906	4.180	5.373	nan	2.373	2.777	5.481	0.699	1.585	1.122	nan	0.509	0.442	4.673
1979	chr11	11673824	11680440	+	0	NA	Intergenic	MIRc|SINE|MIR	-8793	NM_009578	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	nan	10.608	4.794	0.804	0.350	0.055	0.354	0.326	0.537	0.622	0.292	0.317	0.290	0.270	0.577	0.693	0.461	0.855	0.880	nan	0.482	1.176	0.671	0.433	0.752
6341	chr17	13180847	13185083	+	0	NA	Intergenic	Intergenic	-22077	NR_033458	100038394	Mm.401677	NR_033458		Gm10512	ENSMUSG00000073459	predicted gene 10512	ncRNA	5.951	8.116	4.921	6.237	5.415	4.827	5.321	nan	4.010	6.907	3.826	3.280	4.325	6.292	5.135	5.367	5.061	5.080	3.738	3.080	2.875	3.573	3.330	4.507	nan
13886	chr7	148352725	148360429	+	0	NA	Intergenic	Intergenic	3041742	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	9.190	6.989	2.196	9.030	4.879	2.717	6.502	11.979	6.139	7.277	6.012	3.316	9.983	10.390	9.748	9.481	6.437	9.548	4.893	2.004	1.938	5.047	nan	2.188	9.999
11346	chr5	73304554	73308760	+	0	NA	exon (NM_001159889, exon 7 of 7)	exon (NM_001159889, exon 7 of 7)	13863	NM_001159888	68095	Mm.247039	NM_023429	ENSMUSG00000029152	Ociad1	6030432N09Rik|AI481327|AW557942|Asrij|B230209J16Rik|BB021357|Emi2|Imi2|OCIA|TPA018	OCIA domain containing 1	protein-coding	7.297	7.352	2.224	9.590	5.072	3.136	6.260	6.954	5.438	10.479	5.860	2.921	5.505	7.668	8.628	10.102	5.409	9.042	4.564	2.963	3.148	5.826	3.606	3.803	11.539
5648	chr15	99647872	99650567	+	0	NA	intron (NM_012025, intron 1 of 17)	intron (NM_012025, intron 1 of 17)	2437	NM_001253808	26934	Mm.273804	NM_012025	ENSMUSG00000023015	Racgap1	AI227039|AI327394|Band25|GTPase|MgcRacGAP|gtl11|mKIAA1478	Rac GTPase-activating protein 1	protein-coding	5.105	9.079	2.745	6.757	3.077	1.431	1.948	1.943	3.027	2.977	8.191	4.584	1.465	3.295	3.114	nan	2.388	3.151	1.079	1.216	0.532	1.111	0.478	0.458	4.862
3066	chr11	118749701	118755465	+	0	NA	intron (NM_001039168, intron 2 of 14)	intron (NM_001039168, intron 2 of 14)	8458	NM_001285438	52897	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	0.190	nan	0.334	0.185	0.215	0.022	nan	nan	0.152	nan	0.175	0.101	0.116	0.117	0.098	0.429	0.176	nan	1.969	nan	1.283	5.862	0.650	0.403	0.372
12967	chr7	19917908	19919655	+	0	NA	exon (NM_027514, exon 2 of 8)	exon (NM_027514, exon 2 of 8)	2362	NM_027514	52118	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	6.288	7.964	6.802	5.764	5.695	5.271	10.152	5.730	2.386	4.679	2.297	2.402	6.173	10.550	5.853	5.105	4.346	4.854	3.861	4.403	4.800	3.741	4.694	4.799	8.302
1948	chr11	6342917	6346404	+	0	NA	intron (NM_001252287, intron 10 of 22)	intron (NM_001252287, intron 10 of 22)	-50465	NM_001005867	52915	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	4.852	5.315	3.206	4.426	2.954	2.224	3.985	4.419	3.714	6.055	2.390	1.797	4.574	6.142	4.187	5.445	4.487	4.750	4.413	nan	2.618	4.114	4.208	3.203	4.158
15583	chr9	119032885	119034361	+	0	NA	exon (NM_133710, exon 6 of 8)	exon (NM_133710, exon 6 of 8)	1827	NR_029742	387218		NR_029742	ENSMUSG00000065513	Mir26a-1	Mirn26a|Mirn26a-1|miR-26a|mir-26a-1	microRNA 26a-1	ncRNA	0.485	0.268	0.264	0.340	0.134	0.193	0.316	0.261	0.261	0.220	0.270	0.155	0.283	0.236	0.453	0.299	0.270	0.451	5.688	6.616	5.514	6.387	6.256	6.432	0.484
15459	chr9	106145126	106153632	+	0	NA	Intergenic	Intergenic	-4745	NR_029549	387153		NR_029549	ENSMUSG00000065407	Mir135a-1	Mir135a01|Mirn135|Mirn135a-1|mir-135a-1	microRNA 135a-1	ncRNA	7.974	2.937	1.324	7.580	3.649	2.400	4.432	7.002	nan	nan	5.148	2.533	5.737	7.016	6.073	nan	5.190	nan	1.664	1.801	1.548	1.767	1.894	1.865	nan
10808	chr4	140669193	140671994	+	0	NA	Intergenic	Intergenic	-4688	NM_001112722	72754	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	nan	1.235	0.689	2.647	1.630	0.924	1.935	2.152	nan	2.988	0.524	0.409	3.448	6.064	3.814	4.982	2.335	3.822	1.232	0.607	0.465	0.775	nan	0.275	7.861
9964	chr4	21703417	21705041	+	0	NA	Intergenic	L2|LINE|L2	-18266	NM_001080771	230025	Mm.208541	NM_001080771	ENSMUSG00000040478	Prdm13	-	PR domain containing 13	protein-coding	4.882	8.007	2.618	7.016	2.716	1.795	5.375	4.155	4.173	5.338	2.748	2.102	4.140	5.078	4.936	6.299	3.270	6.204	3.688	1.408	2.170	3.332	1.344	1.927	6.579
12343	chr6	82751827	82753574	+	0	NA	intron (NM_013820, intron 2 of 17)	intron (NM_013820, intron 2 of 17)	21754	NM_013820	15277	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	1.692	0.474	0.519	1.112	1.310	1.048	5.394	3.685	2.184	2.109	0.655	0.454	2.610	5.092	4.513	nan	3.509	1.438	1.015	0.645	0.452	0.480	1.840	1.413	nan
10115	chr4	57251924	57254295	+	0	NA	intron (NM_011207, intron 7 of 25)	intron (NM_011207, intron 7 of 25)	48728	NM_011207	545622	Mm.246552	NM_011207	ENSMUSG00000038764	Ptpn3	9530011I20Rik|PTP-H1|PTPCL	protein tyrosine phosphatase, non-receptor type 3	protein-coding	4.105	nan	0.440	2.472	1.216	0.153	4.603	5.307	3.351	3.034	1.302	1.327	5.188	6.217	5.170	6.094	2.098	4.834	nan	0.398	0.416	1.975	0.241	0.287	6.582
4402	chr13	110691594	110696765	+	0	NA	Intergenic	Intergenic	-209320	NR_131193	75139	Mm.490931	NR_131193		Gm38397	-	predicted gene, 38397	ncRNA	nan	4.820	1.605	2.810	1.414	0.754	0.829	1.995	5.712	6.446	4.218	4.239	1.266	1.616	1.757	1.717	0.807	nan	1.102	0.570	0.752	nan	0.639	0.833	2.093
1609	chr10	93219425	93224086	+	0	NA	intron (NM_146239, intron 6 of 16)	intron (NM_146239, intron 6 of 16)	58970	NR_035452	100316689		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	0.518	0.591	0.444	0.513	0.369	0.180	0.259	0.205	0.496	0.416	nan	0.817	0.118	0.265	0.242	0.426	0.343	0.792	nan	5.384	4.718	8.414	5.751	5.343	0.485
794	chr1	162197669	162198921	+	0	NA	intron (NM_001038619, intron 14 of 20)	intron (NM_001038619, intron 14 of 20)	-19328	NR_002870	474332	Mm.479755	NR_002870	ENSMUSG00000078190	Dnm3os	6030416H16Rik|Hag2|Npn1|P/L01	dynamin 3, opposite strand	ncRNA	4.175	1.091	0.304	2.467	3.360	1.825	3.227	2.233	4.500	2.815	2.486	1.849	4.480	4.239	3.660	6.280	4.655	6.040	nan	0.740	0.587	0.645	nan	0.614	2.744
4983	chr14	121833182	121839133	+	0	NA	Intergenic	MLT1E1A|LTR|ERVL-MaLR	-38423	NM_134074	105445	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	3.394	0.828	0.966	1.676	6.810	4.602	3.151	2.273	0.821	0.928	0.661	0.625	0.583	2.249	nan	0.517	0.587	1.269	1.459	1.153	1.347	1.167	1.889	2.390	1.266
12033	chr6	5246692	5248703	+	0	NA	intron (NM_173006, intron 2 of 8)	MLT1G1|LTR|ERVL-MaLR	8536	NM_173006	269823	Mm.9122	NM_173006	ENSMUSG00000029759	Pon3	2810004E20|AI786302	paraoxonase 3	protein-coding	10.765	12.071	6.016	7.744	6.170	3.051	11.330	10.484	5.519	8.746	6.019	3.416	8.594	11.651	10.684	13.305	10.536	8.143	1.006	2.362	2.390	2.604	1.140	0.932	11.591
10237	chr4	86393645	86397059	+	0	NA	intron (NM_029967, intron 22 of 27)	intron (NM_029967, intron 22 of 27)	162951	NM_001081096	75811	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	7.611	6.112	1.972	8.393	5.034	4.142	5.277	6.946	5.444	10.466	5.287	3.863	4.808	7.244	6.672	7.367	4.590	7.221	3.361	nan	3.430	11.875	2.941	3.937	10.445
13564	chr7	116869751	116875671	+	0	NA	Intergenic	L1M2|LINE|L1	368342	NM_001130479	53322	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	6.320	1.873	1.095	1.805	1.036	0.736	4.919	3.612	2.090	2.700	1.709	1.271	8.691	3.712	3.707	5.386	7.507	3.377	0.817	0.744	0.554	0.772	0.750	0.613	5.358
1780	chr10	117419087	117421452	+	0	NA	Intergenic	Intergenic	-43296	NM_001310609	432508	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	4.138	3.629	3.180	4.193	3.429	2.249	1.258	1.980	2.339	2.299	0.955	0.985	1.069	1.935	1.825	2.482	2.417	nan	2.576	2.195	1.932	1.984	2.319	2.424	1.726
11199	chr5	39727192	39729687	+	0	NA	Intergenic	Intergenic	-83808	NM_010474	15476	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	0.485	0.661	0.474	0.427	0.266	0.053	0.620	0.589	0.477	0.233	0.428	0.225	0.211	0.159	nan	0.709	nan	nan	4.845	3.059	1.402	5.662	4.776	2.391	0.345
674	chr1	137144247	137159467	+	0	NA	Intergenic	L1Md_A|LINE|L1	-191409	NM_030676	26424	Mm.16794	NM_030676	ENSMUSG00000026398	Nr5a2	AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B	nuclear receptor subfamily 5, group A, member 2	protein-coding	7.539	0.706	0.465	nan	5.370	3.480	6.837	7.254	4.744	5.586	3.897	3.553	8.137	7.530	6.344	nan	6.303	6.379	5.323	2.726	2.547	6.285	4.226	2.985	7.993
5107	chr15	35198170	35202895	+	0	NA	Intergenic	RLTR12BD_Mm|LTR|ERVK	-44726	NM_019635	56274	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	5.964	0.670	0.551	1.350	1.123	0.545	2.582	1.162	1.899	2.257	0.333	0.409	4.641	4.517	2.157	1.649	3.803	2.723	0.865	0.541	0.308	nan	0.642	0.235	4.792
14304	chr8	73116188	73118913	+	0	NA	intron (NM_001317391, intron 4 of 15)	MTEa-int|LTR|ERVL-MaLR	101038	NR_039551	100628574		NR_039551	ENSMUSG00000093140	Mir28b	mmu-mir-28b	microRNA 28b	ncRNA	4.369	nan	1.877	5.966	2.064	0.762	4.302	4.843	3.276	5.389	2.229	1.401	5.960	5.808	5.091	8.773	4.244	5.201	1.349	0.597	1.309	nan	1.028	1.174	11.191
1317	chr10	58823843	58832925	+	0	NA	intron (NM_172788, intron 1 of 9)	intron (NM_172788, intron 1 of 9)	15025	NM_172788	237353	Mm.333078	NM_172788	ENSMUSG00000037990	Sh3rf3	4831416G18Rik|Igfbp5-ip|Sh3md4|Sh3rf31	SH3 domain containing ring finger 3	protein-coding	7.658	1.012	0.516	6.496	5.732	3.178	4.903	6.276	6.403	9.307	1.062	0.959	7.331	10.363	9.587	12.085	8.060	9.536	nan	0.778	0.646	0.787	0.709	0.619	8.383
5298	chr15	73250970	73257393	+	0	NA	TTS (NR_029561)	TTS (NR_029561)	701	NR_029561	387169		NR_029561	ENSMUSG00000065612	Mir151	Mirn151|mir-151|mmu-mir-151	microRNA 151	ncRNA	9.561	nan	1.486	7.112	3.520	2.554	nan	12.174	4.417	nan	nan	2.676	10.208	nan	7.941	8.522	9.068	7.388	4.508	2.770	2.372	nan	4.190	4.092	9.703
9299	chr3	52083206	52084579	+	0	NA	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	21114	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding	2.893	1.272	1.610	1.448	4.091	3.035	3.970	2.422	3.482	2.834	0.948	1.248	4.776	4.497	2.845	2.698	4.186	3.245	1.595	1.442	0.803	0.786	1.989	2.090	2.437
8533	chr2	116765580	116776029	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-107887	NM_026104	67356	Mm.131623	NM_026104	ENSMUSG00000027355	Tmco5	1700095F04Rik|Tmco5a	transmembrane and coiled-coil domains 5	protein-coding	5.289	1.023	0.644	2.786	2.179	1.382	6.159	6.851	5.491	6.121	2.944	1.356	nan	6.489	6.217	7.402	6.924	5.478	0.846	0.812	0.751	1.033	0.666	0.548	5.336
2430	chr11	72656553	72662614	+	0	NA	intron (NM_025985, intron 1 of 5)	intron (NM_025985, intron 1 of 5)	-30419	NM_009671	11736	Mm.10313	NM_009671	ENSMUSG00000020790	Ankfy1	Ankhzn|ZFYVE14|mKIAA1255	ankyrin repeat and FYVE domain containing 1	protein-coding	3.506	0.948	0.598	2.323	3.972	2.243	3.876	4.612	4.753	4.170	4.364	5.586	3.858	4.972	4.061	3.626	2.961	4.134	1.500	1.999	0.956	1.598	nan	0.725	nan
2943	chr11	109354593	109359954	+	0	NA	intron (NR_038097, intron 1 of 1)	(TC)n|Simple_repeat|Simple_repeat	-5521	NM_010303	14674	Mm.193925	NM_010303	ENSMUSG00000020611	Gna13	AU024132|AU043124|Galpha13	guanine nucleotide binding protein, alpha 13	protein-coding	3.622	8.749	3.667	2.491	1.815	1.157	5.486	5.238	2.482	3.303	1.706	1.755	4.541	3.846	5.668	5.420	3.355	3.531	3.748	2.963	2.710	6.855	3.007	1.794	3.700
2596	chr11	87387665	87389842	+	0	NA	intron (NM_053269, intron 6 of 8)	intron (NM_053269, intron 6 of 8)	15742	NM_053269	114714	Mm.37376	NM_053269	ENSMUSG00000007646	Rad51c	R51H3|Rad51l2	RAD51 paralog C	protein-coding	5.284	1.157	0.397	nan	3.047	1.679	4.706	5.093	2.442	3.135	0.608	0.225	3.120	5.446	4.997	5.808	2.261	4.797	1.015	0.525	0.207	nan	0.980	0.638	4.290
12224	chr6	50390619	50393153	+	0	NA	intron (NM_001347213, intron 2 of 23)	intron (NM_001347213, intron 2 of 23)	-9049	NM_027881	71720	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	1.010	1.000	0.564	1.397	0.195	0.170	1.099	1.425	1.656	1.123	6.823	1.876	2.057	2.343	2.585	1.744	1.040	3.176	nan	0.570	0.305	0.941	0.760	0.371	4.066
1503	chr10	80213101	80220385	+	0	NA	intron (NR_038088, intron 1 of 4)	intron (NR_038088, intron 1 of 4)	-9855	NM_023431	68114	Mm.273418	NM_023431	ENSMUSG00000020156	Mum1	2610019J09|9430059D04Rik|UBE-1C2	melanoma associated antigen (mutated) 1	protein-coding	5.889	4.954	2.411	nan	7.525	5.834	4.973	4.913	2.732	5.031	2.258	2.819	4.556	7.389	6.137	6.477	6.021	5.876	nan	3.114	3.294	3.873	3.311	3.737	7.136
14315	chr8	73288821	73293391	+	0	NA	intron (NM_010687, intron 1 of 14)	intron (NM_010687, intron 1 of 14)	62434	NM_001317391	16795	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	5.879	12.351	4.337	5.453	2.528	1.708	nan	6.073	nan	4.026	2.440	1.195	5.027	6.274	5.321	6.473	5.063	4.476	2.275	2.310	1.544	nan	1.703	0.991	7.782
6366	chr17	17929160	17930090	+	0	NA	Intergenic	L1_Mur2|LINE|L1	-40833	NM_008042	14294	Mm.378918	NM_008042	ENSMUSG00000079700	Fpr3	ALX|Fpr-rs1|Fpr-s1|Fprl1|LXA4-R|Lxa4r	formyl peptide receptor 3	protein-coding	2.980	0.447	0.142	0.964	5.032	2.213	3.236	3.324	2.151	1.608	3.061	2.602	1.112	3.997	2.003	1.545	1.790	2.268	0.494	0.471	0.469	0.345	0.671	0.452	1.352
7792	chr19	44060392	44061386	+	0	NA	intron (NM_145502, intron 4 of 10)	intron (NM_145502, intron 4 of 10)	8797	NM_145502	226144	Mm.279865	NM_145502	ENSMUSG00000025198	Erlin1	2810439N09Rik|C80197|Keo4|Spfh1	ER lipid raft associated 1	protein-coding	2.548	0.334	0.231	1.496	0.856	0.232	4.489	2.936	2.520	3.330	0.344	0.074	4.374	3.244	1.799	3.600	4.335	1.839	0.230	0.263	0.246	0.498	2.904	1.359	4.032
12023	chr6	3460473	3463257	+	0	NA	intron (NM_178899, intron 9 of 9)	(TTTC)n|Simple_repeat|Simple_repeat	32633	NM_178899	101202	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	0.669	0.707	0.364	0.618	0.427	0.356	1.093	0.791	0.804	0.448	0.297	0.479	0.465	0.533	0.775	nan	0.956	0.918	5.642	7.254	2.557	8.868	5.690	2.768	nan
15017	chr9	44290590	44298525	+	0	NA	Intergenic	Intergenic	-6313	NM_138955	192663	Mm.101876	NM_138955	ENSMUSG00000032131	Abcg4	6430517O04Rik	ATP-binding cassette, sub-family G (WHITE), member 4	protein-coding	11.777	7.209	2.290	10.398	4.866	3.162	10.110	11.816	5.611	11.764	8.268	3.838	9.244	13.550	9.346	11.243	6.091	9.292	2.329	2.458	2.351	nan	1.662	1.975	19.386
2512	chr11	78220249	78238186	+	0	NA	intron (NM_009297, intron 9 of 36)	intron (NM_009297, intron 9 of 36)	16486	NM_009297	20926	Mm.20755	NM_009297	ENSMUSG00000002052	Supt6	5131400N11Rik|AI132449|SPT6|Supt6h|mKIAA0162	suppressor of Ty 6	protein-coding	nan	0.813	0.440	2.565	3.118	2.062	6.612	5.170	3.245	3.989	1.589	0.991	5.178	6.507	nan	7.292	5.412	5.330	2.124	1.862	nan	3.169	2.349	1.807	6.377
12608	chr6	114820996	114839567	+	0	NA	intron (NM_001253718, intron 19 of 19)	intron (NM_001253718, intron 19 of 19)	91471	NM_177683	232334	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	5.885	3.387	1.410	6.486	3.491	2.197	5.545	5.130	4.620	4.811	4.869	2.205	4.973	nan	6.048	8.916	5.898	6.712	1.758	1.441	1.390	1.898	nan	1.002	9.136
7637	chr19	21907099	21909062	+	0	NA	Intergenic	Lx5|LINE|L1	129740	NM_031997	83921	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	4.203	1.273	1.325	3.783	3.023	1.256	2.402	1.724	2.440	3.028	2.310	1.314	1.682	2.171	1.330	2.175	2.613	3.261	1.085	1.185	0.874	0.928	0.973	0.875	1.831
15301	chr9	74800751	74802083	+	0	NA	Intergenic	Intergenic	-47020	NR_045284	100503019	Mm.482658	NR_045284	ENSMUSG00000066477	Gm16551	-	predicted gene 16551	ncRNA	8.997	12.993	4.599	10.964	5.084	3.733	6.694	9.677	5.706	11.151	4.304	4.557	8.231	9.867	8.844	9.530	6.525	8.907	7.115	7.653	6.459	7.145	6.330	5.402	16.133
10280	chr4	94808381	94812400	+	0	NA	intron (NM_001290549, intron 6 of 22)	intron (NM_001290549, intron 6 of 22)	71101	NM_001290551	21687	Mm.14313	NM_013690	ENSMUSG00000006386	Tek	AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2	endothelial-specific receptor tyrosine kinase	protein-coding	2.910	nan	0.417	2.953	3.048	1.724	3.922	5.297	4.350	4.118	3.082	2.011	4.851	4.746	6.314	5.903	2.555	4.885	4.920	1.445	1.067	6.351	2.410	1.819	4.759
1286	chr10	52539993	52542052	+	0	NA	Intergenic	Intergenic	4717	NR_037920	22639	Mm.490597	NM_009540	ENSMUSG00000049576	Zfa-ps	Zfa|Zfx	zinc finger protein, autosomal, pseudogene	pseudo	4.157	nan	0.542	1.125	2.012	1.315	2.087	2.803	2.136	2.338	0.321	0.483	3.339	3.806	3.812	2.856	5.221	2.634	nan	0.806	1.012	0.381	0.389	0.364	1.963
6993	chr18	4978744	4983582	+	0	NA	Intergenic	CT-rich|Low_complexity|Low_complexity	-65426	NM_153153	225115	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	nan	0.732	0.700	0.911	1.387	0.981	0.835	1.109	0.766	0.974	1.089	0.766	nan	0.791	0.875	0.842	0.994	1.300	7.031	5.791	4.227	4.943	15.798	12.273	0.792
15450	chr9	103127797	103138398	+	0	NA	intron (NM_173781, intron 1 of 7)	B3A|SINE|B2	21023	NM_173781	270192	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	5.507	1.027	0.593	2.592	1.281	0.620	5.337	6.223	nan	nan	1.012	1.196	4.410	4.156	4.748	6.366	4.213	nan	0.437	0.800	0.841	0.995	0.626	0.506	8.160
9786	chr3	126298564	126303466	+	0	NA	Intergenic	Intergenic	-62837	NM_173451	271970	Mm.317021	NM_173451	ENSMUSG00000046561	Arsj	9330196J05Rik|D830047F08	arylsulfatase J	protein-coding	8.792	11.412	3.557	9.416	5.003	2.293	13.132	8.274	6.055	10.374	6.050	3.348	9.697	10.416	9.424	9.258	6.312	10.755	4.973	2.532	2.353	4.604	3.847	3.339	12.300
4744	chr14	63378283	63381823	+	0	NA	intron (NM_007549, intron 8 of 12)	intron (NM_007549, intron 8 of 12)	37134	NM_007549	12143	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	11.964	17.160	5.586	12.575	7.255	4.717	9.913	14.625	7.959	16.112	10.318	5.671	9.844	13.889	12.366	12.848	6.368	10.925	7.441	nan	3.758	8.138	4.222	6.176	18.240
6680	chr17	46841138	46844771	+	0	NA	Intergenic	B3|SINE|B2	-11541	NM_001100452	210982	Mm.37642	NM_001100452	ENSMUSG00000036568	Gltscr1l	mKIAA0240	GLTSCR1-like	protein-coding	4.137	3.820	1.896	4.711	3.063	1.946	4.840	3.465	3.299	4.907	2.394	2.062	3.416	7.674	5.070	6.146	5.588	3.777	2.275	1.455	1.345	2.529	1.893	2.346	7.344
13686	chr7	125675292	125681260	+	0	NA	intron (NM_207239, intron 8 of 36)	ORR1G|LTR|ERVL-MaLR	29412	NM_207239	233863	Mm.294173	NM_207239	ENSMUSG00000032777	Gtf3c1	-	general transcription factor III C 1	protein-coding	7.124	2.740	1.161	5.862	5.843	3.192	5.892	9.112	6.301	8.586	2.681	3.025	9.938	11.171	6.896	7.083	8.578	7.746	2.113	1.257	0.924	1.743	1.268	1.123	4.059
12630	chr6	116334877	116336843	+	0	NA	Intergenic	Intergenic	-2162	NM_001302385	71779	Mm.27064	NM_027920	ENSMUSG00000025702	March8	1300017E09Rik|MARCH-VIII|Mir	membrane-associated ring finger (C3HC4) 8	protein-coding	4.124	0.869	0.939	1.910	1.696	1.047	5.893	5.473	2.292	2.378	1.396	1.341	3.689	4.731	4.227	4.982	4.605	3.046	1.542	1.080	1.261	1.342	nan	1.820	3.640
5339	chr15	75691330	75693442	+	0	NA	Intergenic	Intergenic	-11902	NM_001163465	14787	Mm.57052	NM_008164	ENSMUSG00000022580	Rhpn1	BB023497|Grbp|Rhophilin|mKIAA1929	rhophilin, Rho GTPase binding protein 1	protein-coding	5.773	6.997	3.040	5.281	4.377	2.773	6.741	10.013	3.867	nan	4.556	3.743	4.975	6.268	4.713	4.591	3.828	4.874	2.285	1.475	2.821	nan	2.007	2.822	5.557
15155	chr9	60605582	60608432	+	0	NA	intron (NM_001311095, intron 11 of 15)	intron (NM_001311095, intron 11 of 15)	-61125	NR_040463	100504561	Mm.410770	NR_040463	ENSMUSG00000111761	9230112J17Rik	-	RIKEN cDNA 9230112J17 gene	ncRNA	1.565	0.818	0.364	0.962	0.821	0.398	1.049	2.334	1.000	1.083	1.878	1.909	0.790	1.460	1.081	1.063	0.858	0.825	4.270	5.006	2.480	8.314	2.692	1.564	1.224
2638	chr11	93819666	93821231	+	0	NA	Intergenic	RMER1B|Other|Other	65318	NM_001013375	217109	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	2.064	nan	0.081	0.868	0.712	0.973	2.872	1.200	1.124	1.170	0.987	0.433	3.914	4.527	1.160	1.282	1.125	2.525	0.571	nan	0.684	0.391	nan	nan	1.139
11368	chr5	77503304	77505405	+	0	NA	Intergenic	Intergenic	38866	NR_131050	69370	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	2.513	0.924	0.431	1.835	1.918	0.588	3.671	2.849	2.009	2.704	2.894	1.137	3.203	4.832	3.965	3.660	2.233	3.788	0.547	0.487	0.153	0.819	0.215	0.100	2.585
355	chr1	82380802	82382352	+	0	NA	intron (NM_029777, intron 6 of 6)	intron (NM_029777, intron 6 of 6)	42528	NM_001122685	76867	Mm.226994	NM_029777	ENSMUSG00000026142	Rhbdd1	4930418P06Rik|RRP4|mRHBDD1	rhomboid domain containing 1	protein-coding	1.332	0.897	0.496	1.041	0.393	0.311	0.510	0.455	1.000	0.520	4.817	1.952	0.445	0.287	0.594	1.095	0.653	0.882	nan	nan	0.237	0.762	nan	0.243	nan
553	chr1	128702785	128703855	+	0	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-111021	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	2.622	nan	0.369	1.482	1.249	0.632	2.388	2.376	1.279	1.770	0.322	0.464	2.665	3.226	3.063	4.264	2.509	3.072	nan	0.262	0.114	0.465	0.204	0.186	1.614
13677	chr7	125258103	125265981	+	0	NA	Intergenic	Lx5|LINE|L1	87744	NR_045804	71208	Mm.159465	NM_172408	ENSMUSG00000045928	4933440M02Rik	-	RIKEN cDNA 4933440M02 gene	ncRNA	7.915	6.536	2.601	5.889	5.615	3.552	7.887	9.529	6.190	6.910	3.278	2.077	9.457	9.500	nan	8.122	7.700	7.688	3.047	1.600	1.623	2.303	2.062	2.033	5.252
3546	chr12	84919966	84920948	+	0	NA	3' UTR (NM_178065, exon 20 of 20)	3' UTR (NM_178065, exon 20 of 20)	-43962	NM_013589	16997	Mm.3900	NM_013589	ENSMUSG00000002020	Ltbp2	AW208642	latent transforming growth factor beta binding protein 2	protein-coding	4.789	1.896	1.071	2.149	2.385	1.417	8.899	5.976	1.311	1.074	1.401	1.815	3.085	4.011	3.882	3.561	3.287	4.380	0.712	1.012	1.250	0.768	1.312	1.207	5.538
8811	chr2	152182942	152190509	+	0	NA	Intergenic	Intergenic	-40115	NM_007788	12995	Mm.23692	NM_007788	ENSMUSG00000074698	Csnk2a1	Csnk2a1-rs4	casein kinase 2, alpha 1 polypeptide	protein-coding	3.525	1.352	0.770	2.100	2.410	1.705	3.696	8.402	2.207	1.869	1.069	1.025	3.638	3.193	3.018	4.411	3.859	2.345	nan	1.418	1.907	2.534	2.045	1.827	3.386
1252	chr10	41994388	41998002	+	0	NA	intron (NM_001034858, intron 4 of 17)	ORR1E|LTR|ERVL-MaLR	22187	NM_001034858	213402	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	12.234	11.841	2.499	16.749	4.770	3.605	7.672	12.660	7.025	19.684	7.514	4.621	8.505	13.416	12.730	14.674	7.965	13.880	5.266	2.538	3.271	7.461	3.153	4.545	23.981
12245	chr6	52587615	52590928	+	0	NA	intron (NM_145567, intron 4 of 7)	intron (NM_145567, intron 4 of 7)	51029	NM_145567	58875	Mm.286458	NM_145567	ENSMUSG00000029776	Hibadh	6430402H10Rik|AI265272	3-hydroxyisobutyrate dehydrogenase	protein-coding	5.014	3.576	1.175	4.766	2.365	1.115	6.090	6.842	4.658	5.666	2.729	2.505	6.537	6.727	7.095	8.419	5.421	6.289	nan	0.833	0.481	2.282	1.180	1.004	6.534
7649	chr19	24112809	24114869	+	0	NA	intron (NM_001198985, intron 12 of 22)	B1_Mus2|SINE|Alu	60301	NM_001198985	21873	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	nan	0.577	0.412	nan	7.261	6.250	5.484	5.925	5.344	4.730	nan	0.965	5.820	8.382	4.812	6.097	6.851	6.405	nan	1.641	1.500	1.909	3.155	2.681	4.430
10739	chr4	137062244	137063341	+	0	NA	Intergenic	RMER1B|Other|Other	-14097	NM_198248	230848	Mm.31068	NM_198248	ENSMUSG00000060862	Zbtb40	BC059177|C230087D24|Gm571|mKIAA0478	zinc finger and BTB domain containing 40	protein-coding	nan	0.344	0.250	2.110	2.176	2.966	3.602	2.158	nan	2.474	0.522	1.526	2.242	4.172	2.679	2.339	1.504	nan	0.667	0.318	0.715	0.534	nan	0.179	3.312
8443	chr2	91297196	91299488	+	0	NA	intron (NM_001311144, intron 4 of 8)	B3A|SINE|B2	33227	NM_023854	77038	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	6.289	1.476	0.679	9.416	1.518	1.121	5.654	8.932	4.223	6.907	1.168	1.785	7.949	6.373	7.905	9.150	6.767	8.977	1.445	1.782	1.113	3.133	1.031	1.353	15.593
2877	chr11	105484821	105489704	+	0	NA	Intergenic	Intergenic	-30527	NM_001039242	632687	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|OTTMUSG00000002847|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	5.253	0.521	0.685	nan	3.452	2.494	3.240	4.375	2.632	nan	0.919	0.702	3.427	nan	2.501	2.189	3.039	2.942	1.293	1.232	0.972	nan	1.033	0.961	2.472
2643	chr11	93997337	94001757	+	0	NA	intron (NM_001199203, intron 1 of 29)	intron (NM_001199203, intron 1 of 29)	3456	NM_027569	70834	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	1.410	nan	0.409	2.376	0.954	0.511	0.805	2.264	1.461	1.394	1.675	1.302	0.995	1.433	1.637	2.484	nan	1.679	3.541	4.816	4.061	8.891	nan	nan	1.872
555	chr1	129098527	129104285	+	0	NA	Intergenic	Intergenic	-171898	NM_172485	210417	Mm.380518	NM_172485	ENSMUSG00000042581	Thsd7b	1700074E13Rik|B930082A18|D130067I03Rik	thrombospondin, type I, domain containing 7B	protein-coding	6.967	nan	1.516	4.710	2.181	1.376	4.121	5.314	4.807	5.706	4.430	2.721	4.378	4.998	6.354	8.541	4.047	5.545	5.905	1.857	1.723	4.255	3.516	2.504	8.371
1037	chr1	193769885	193772112	+	0	NA	Intergenic	MIRb|SINE|MIR	-263468	NR_029592	387201		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	3.894	1.423	0.671	5.025	2.538	1.535	0.720	1.117	1.447	1.761	0.678	0.495	0.723	1.579	1.013	2.333	1.192	2.795	0.604	0.376	0.789	0.547	nan	0.513	2.138
6508	chr17	29583874	29587536	+	0	NA	intron (NR_045447, intron 3 of 3)	intron (NR_045447, intron 3 of 3)	10600	NR_045447	74092	Mm.396264	NR_045447	ENSMUSG00000089900	Tbc1d22bos	0610038L08Rik	TBC1 domain family, member 22B, opposite strand	ncRNA	2.837	1.406	1.381	1.803	3.235	2.600	2.258	1.239	1.597	1.864	0.891	1.531	1.108	2.145	1.228	nan	1.747	1.921	0.855	0.930	1.552	0.846	0.966	0.984	1.918
5814	chr16	13873481	13878041	+	0	NA	intron (NM_001291017, intron 6 of 23)	B4A|SINE|B4	27384	NM_001039533	94184	Mm.171484	NM_053181	ENSMUSG00000022680	Pdxdc1	2210010A19Rik|AA415817|Kiaa0251-hp	pyridoxal-dependent decarboxylase domain containing 1	protein-coding	3.966	0.755	0.826	2.000	5.444	4.375	6.346	5.691	3.967	nan	1.189	1.359	5.337	5.328	4.834	nan	4.199	5.290	2.342	0.936	1.046	1.130	2.559	2.844	3.099
10716	chr4	135602928	135604976	+	0	NA	Intergenic	Intergenic	-22703	NR_015613	73937	Mm.292326	NM_028688	ENSMUSG00000086788	1700029M20Rik	4930406E24Rik	RIKEN cDNA 1700029M20 gene	ncRNA	nan	0.993	0.509	2.642	4.046	2.338	2.078	2.715	nan	1.509	2.350	1.279	2.060	5.299	2.141	1.870	1.324	2.492	1.022	0.485	0.952	1.233	nan	0.728	2.232
6879	chr17	80119535	80121894	+	0	NA	Intergenic	RLTR21|LTR|ERVK	-6757	NM_176963	319625	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	5.577	0.681	1.108	0.683	3.158	1.040	9.856	4.975	nan	1.929	3.602	1.155	2.673	2.942	3.830	nan	5.116	2.710	0.950	1.008	0.839	0.592	1.123	0.490	5.235
4164	chr13	55428496	55432676	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-3782	NM_021489	58992	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	nan	6.932	2.031	1.473	0.760	0.414	0.694	1.011	0.629	1.453	1.268	0.684	0.523	nan	1.546	nan	0.534	nan	3.020	1.513	1.760	5.199	1.672	2.303	2.739
7926	chr2	4310524	4313335	+	0	NA	intron (NM_172475, intron 1 of 22)	B1F|SINE|Alu	-89047	NM_001177843	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	3.567	2.554	0.887	4.081	1.216	0.629	1.525	2.285	2.970	2.396	1.455	0.511	1.504	2.728	2.982	4.168	1.780	4.074	3.584	0.971	0.645	2.665	1.438	0.699	4.449
15613	chr9	121550841	121552532	+	0	NA	Intergenic	RLTR44B|LTR|ERVK	-35334	NR_040740	75384	Mm.445955	NR_040740	ENSMUSG00000084995	Lyzl4os	4930589B17Rik|4930596M17Rik	lysozyme-like 4, opposite strand	ncRNA	1.867	4.254	0.844	2.507	0.511	0.503	1.510	0.788	0.877	2.368	2.413	2.803	0.968	1.017	2.250	1.669	1.218	1.786	4.788	1.565	2.204	6.702	nan	3.836	4.481
195	chr1	55293714	55295351	+	0	NA	Intergenic	Intergenic	57355	NM_175439	212679	Mm.19223	NM_175439	ENSMUSG00000046994	Mars2	C730026E21Rik|MetRS	methionine-tRNA synthetase 2 (mitochondrial)	protein-coding	5.208	8.300	2.293	7.177	1.594	0.431	3.364	3.694	3.661	5.417	3.322	1.501	5.132	4.146	7.866	11.509	3.513	6.544	2.948	1.061	0.299	5.348	1.400	1.399	12.129
5321	chr15	74555379	74556885	+	0	NA	intron (NM_174991, intron 17 of 30)	intron (NM_174991, intron 17 of 30)	39936	NM_174991	107831	Mm.43133	NM_174991	ENSMUSG00000034730	Adgrb1	B830018M07Rik|Bai1|R75078|mKIAA4089	adhesion G protein-coupled receptor B1	protein-coding	1.183	nan	0.978	nan	0.257	0.240	2.631	5.190	1.426	nan	1.873	1.297	2.768	3.668	3.120	3.191	2.312	2.625	1.493	0.404	0.325	2.842	0.802	0.364	2.901
12887	chr6	149080607	149083455	+	0	NA	intron (NM_177192, intron 1 of 20)	intron (NM_177192, intron 1 of 20)	19649	NM_177192	320560	Mm.426874	NM_177192	ENSMUSG00000030313	Dennd5b	9330160C06Rik|AI852444|D030011O10Rik|ENSMUSG00000072657|Gm17524	DENN/MADD domain containing 5B	protein-coding	5.916	1.171	0.763	3.225	3.556	2.719	7.439	8.257	2.676	nan	2.607	2.188	nan	7.940	4.638	4.462	6.731	2.906	1.211	nan	1.327	nan	0.913	0.812	2.211
5800	chr16	11225011	11226366	+	0	NA	non-coding (NR_038156, exon 3 of 3)	non-coding (NR_038156, exon 3 of 3)	22305	NR_038156	69918	Mm.440400	NR_038154		2610020C07Rik	-	RIKEN cDNA 2610020C07 gene	ncRNA	3.096	1.175	0.525	0.744	2.930	2.339	3.616	4.102	1.659	1.197	1.484	1.199	2.670	3.639	2.625	1.876	2.547	2.622	0.969	0.960	0.783	0.610	0.750	0.615	1.556
12947	chr7	17426707	17432297	+	0	NA	Intergenic	RLTR22_Mur|LTR|ERVK	226025	NM_054064	114872	Mm.322280	NM_054064	ENSMUSG00000023159	Psg29	AA102956|AA409969|cea17	pregnancy-specific glycoprotein 29	protein-coding	10.019	17.681	6.413	10.383	8.028	3.736	7.866	9.902	5.386	8.942	8.168	3.646	5.726	9.823	7.208	9.259	7.483	8.329	5.168	5.072	4.284	5.846	5.886	4.650	13.534
679	chr1	137438102	137441959	+	0	NA	Intergenic	Intergenic	-479582	NM_030676	26424	Mm.16794	NM_030676	ENSMUSG00000026398	Nr5a2	AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B	nuclear receptor subfamily 5, group A, member 2	protein-coding	5.052	1.271	0.686	nan	0.555	0.354	1.726	0.654	1.224	1.811	0.519	0.408	1.117	nan	2.119	nan	0.603	1.882	0.991	0.742	0.551	1.113	0.772	0.487	nan
6195	chr16	91405203	91414149	+	0	NA	intron (NM_008349, intron 2 of 6)	intron (NM_008349, intron 2 of 6)	3441	NM_008349	16155	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	9.406	nan	2.091	5.067	4.432	2.364	7.639	7.635	4.456	6.187	3.466	2.454	6.604	6.727	7.042	8.612	5.257	nan	2.820	2.444	2.027	nan	2.594	2.361	8.384
13404	chr7	91238287	91239943	+	0	NA	intron (NM_011807, intron 1 of 22)	intron (NM_011807, intron 1 of 22)	148329	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	2.109	1.090	1.068	2.477	2.790	1.954	2.533	3.606	2.965	2.572	1.322	1.371	3.824	3.796	2.392	nan	1.638	nan	0.705	0.416	0.962	nan	0.349	0.553	1.348
7943	chr2	5765119	5766877	+	0	NA	Intergenic	Intergenic	-51236	NM_177343	227541	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	10.988	11.466	4.982	9.771	4.061	1.855	7.924	9.475	6.676	8.369	7.170	3.921	8.773	9.041	10.424	10.997	8.714	10.476	6.662	4.889	4.701	8.705	5.352	5.586	14.908
2355	chr11	68779615	68785499	+	0	NA	intron (NM_175260, intron 15 of 40)	intron (NM_175260, intron 15 of 40)	70574	NM_023668	83431	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	4.790	3.310	1.465	3.929	3.010	2.313	4.966	6.914	2.712	3.457	4.008	3.037	3.597	5.394	5.275	6.233	4.506	5.021	6.585	6.181	4.757	5.257	nan	5.976	5.476
1241	chr10	41459299	41460500	+	0	NA	intron (NM_001277229, intron 5 of 5)	intron (NM_001277229, intron 5 of 5)	9541	NR_102360	268294	Mm.258475	NM_153398	ENSMUSG00000019826	Zbtb24	BC055367|Bif1|Bsg1|ZNF450	zinc finger and BTB domain containing 24	protein-coding	3.519	0.485	1.348	1.282	1.468	0.976	2.074	1.516	1.925	1.384	1.037	0.247	1.803	3.191	1.210	2.083	3.233	1.667	0.268	1.263	0.612	0.307	0.746	1.221	2.448
5495	chr15	82995207	83004766	+	0	NA	intron (NM_001271414, intron 5 of 5)	B1F|SINE|Alu	23152	NM_028728	74039	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	9.061	nan	1.703	nan	4.644	2.143	11.885	13.290	4.807	5.959	nan	2.480	11.471	12.491	10.782	9.907	8.291	8.855	nan	3.618	3.251	nan	4.584	3.750	12.941
9720	chr3	115727002	115728768	+	0	NA	Intergenic	Intergenic	-12830	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	1.608	0.623	0.447	0.908	1.579	0.902	4.629	1.820	1.217	nan	1.153	0.481	2.335	3.688	2.311	3.052	2.814	2.024	1.339	1.475	0.971	1.028	1.963	1.128	nan
1441	chr10	75382160	75385111	+	0	NA	Intergenic	L1MA4|LINE|L1	-23276	NM_133995	103149	Mm.441195	NM_133995	ENSMUSG00000033427	Upb1	AI195023	ureidopropionase, beta	protein-coding	8.887	9.477	3.803	9.614	5.477	3.837	4.922	5.271	6.224	9.419	4.513	3.654	7.792	10.527	8.781	9.508	7.508	9.293	6.006	3.854	4.039	6.472	3.749	4.690	12.728
647	chr1	135914834	135918727	+	0	NA	intron (NM_001313701, intron 1 of 13)	intron (NM_001313701, intron 1 of 13)	2427	NM_001313701	18772	Mm.4494	NM_019645	ENSMUSG00000026413	Pkp1	-	plakophilin 1	protein-coding	0.481	0.647	0.336	nan	0.146	0.125	0.438	0.646	0.416	0.400	0.326	0.145	0.407	nan	0.705	nan	0.579	0.781	5.286	3.085	2.052	5.171	4.501	4.315	nan
10185	chr4	68680984	68683051	+	0	NA	Intergenic	RLTR17D_Mm|LTR|ERVK	272380	NM_019967	56710	Mm.248788	NM_019967	ENSMUSG00000028351	Brinp1	BRINP|Dbc1|Dbccr1|Fam5a	bone morphogenic protein/retinoic acid inducible neural specific 1	protein-coding	0.373	0.447	0.342	0.224	0.192	0.182	0.472	0.407	0.129	0.121	0.234	0.143	0.081	0.123	0.174	nan	0.670	0.467	2.841	4.152	3.184	3.646	nan	3.548	nan
13829	chr7	139926154	139928580	+	0	NA	exon (NM_177261, exon 20 of 31)	exon (NM_177261, exon 20 of 31)	-16489	NM_009482	22286	Mm.10205	NM_009482	ENSMUSG00000047751	Utf1	AI505934	undifferentiated embryonic cell transcription factor 1	protein-coding	6.869	7.335	2.427	8.697	3.813	1.875	3.278	7.058	3.540	4.648	5.138	2.502	3.646	6.138	5.737	6.175	3.278	8.006	0.870	0.848	0.646	1.104	0.360	0.316	8.528
9257	chr3	40997508	41000417	+	0	NA	Intergenic	Lx2B|LINE|L1	48331	NM_001040399	214048	Mm.46782	NM_027663	ENSMUSG00000025762	Larp1b	1700108L22Rik|4933421B21Rik|AA690246|Larp2	La ribonucleoprotein domain family, member 1B	protein-coding	1.956	1.361	0.385	1.920	2.409	0.859	3.721	3.781	nan	2.312	8.315	2.848	3.521	4.071	3.372	2.429	1.452	2.361	nan	1.034	0.435	nan	1.170	0.745	2.209
13979	chr8	9092969	9094296	+	0	NA	Intergenic	Intergenic	38656	NR_045854	71249	Mm.158635	NR_045854	ENSMUSG00000108848	4933430N04Rik	-	RIKEN cDNA 4933430N04 gene	ncRNA	4.536	0.761	0.365	1.247	1.357	0.483	2.883	2.914	1.824	3.061	0.325	0.383	6.470	3.926	4.198	6.076	5.557	4.041	0.655	0.852	0.346	1.070	0.430	0.104	5.193
4368	chr13	104825789	104831533	+	0	NA	intron (NR_135272, intron 2 of 4)	intron (NR_135272, intron 2 of 4)	11491	NR_135272	67288	Mm.125465	NM_026075	ENSMUSG00000021716	Srek1ip1	3110031B13Rik|AI462702|AV348305|AW121048|Sfrs12ip1|Srsf12ip1	splicing regulatory glutamine/lysine-rich protein 1interacting protein 1	protein-coding	4.264	nan	0.731	5.064	2.895	1.405	2.835	4.617	4.076	nan	4.270	2.547	4.366	6.350	4.461	5.442	2.817	nan	1.390	1.211	0.862	nan	0.761	0.416	4.352
5328	chr15	74747789	74770148	+	0	NA	Intergenic	Intergenic	4599	NM_010742	17068	Mm.878	NM_010742	ENSMUSG00000034634	Ly6d	Ly-61|Ly61|Thb	lymphocyte antigen 6 complex, locus D	protein-coding	nan	nan	5.765	nan	9.482	7.363	nan	11.906	7.389	nan	nan	5.771	7.902	nan	7.338	7.086	nan	8.906	2.426	3.521	3.774	nan	2.564	2.559	7.374
11104	chr5	30918937	30920281	+	0	NA	intron (NM_133918, intron 5 of 7)	B2_Mm2|SINE|B2	-1950	NM_001310525	16548	Mm.22451	NM_008439	ENSMUSG00000029162	Khk	-	ketohexokinase	protein-coding	1.433	0.897	0.549	1.551	1.474	0.722	5.787	5.485	2.168	1.852	1.289	3.188	3.208	3.970	2.932	2.328	1.714	2.138	4.774	3.843	3.161	6.028	5.057	2.882	1.481
14854	chr9	13286255	13288949	+	0	NA	intron (NM_025534, intron 8 of 8)	intron (NM_025534, intron 8 of 8)	40646	NM_025534	66396	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	6.042	1.955	0.988	4.306	3.218	1.489	3.542	4.212	5.135	5.786	2.539	2.893	3.838	5.808	4.422	5.445	4.276	4.341	0.624	1.645	0.955	0.770	0.844	0.498	4.691
12263	chr6	56311556	56312693	+	0	NA	intron (NM_001159956, intron 1 of 16)	ORR1D1|LTR|ERVL-MaLR	50268	NM_001159952	18575	Mm.5145	NM_011054	ENSMUSG00000004347	Pde1c	-	phosphodiesterase 1C	protein-coding	0.334	13.987	6.343	0.441	0.252	0.429	0.221	0.282	1.356	2.091	0.271	0.619	2.115	0.189	11.028	0.759	nan	3.009	10.788	6.597	6.037	10.289	11.076	7.507	3.365
11969	chr5	149358829	149360329	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-52227	NM_027519	70717	Mm.252139	NM_027519	ENSMUSG00000029659	Medag	6330406I15Rik|Awms3|MEDA-4|Meda4|mAWMS3	mesenteric estrogen dependent adipogenesis	protein-coding	6.887	3.126	1.457	5.160	5.324	3.914	4.163	6.972	nan	5.059	2.153	2.028	4.370	5.341	6.055	6.253	4.569	6.700	2.342	1.264	2.556	2.677	2.851	2.111	nan
11655	chr5	121900257	121906451	+	0	NA	intron (NM_001312908, intron 4 of 22)	intron (NM_001312908, intron 4 of 22)	54326	NM_175474	231717	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	7.585	7.587	3.056	7.247	6.160	4.217	7.038	6.959	4.593	6.607	8.400	3.413	5.849	9.563	7.570	6.966	5.412	7.352	nan	nan	2.133	3.383	nan	2.143	8.927
14531	chr8	108038277	108047394	+	0	NA	Intergenic	Lx|LINE|L1	-454353	NM_010817	17463	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	4.656	1.229	0.456	3.938	3.177	1.666	5.254	6.167	2.058	3.945	0.749	0.794	5.503	7.588	5.039	6.260	3.845	4.060	0.759	0.957	0.841	nan	0.879	0.670	8.953
11782	chr5	135365891	135368982	+	0	NA	exon (NM_178240, exon 6 of 6)	exon (NM_178240, exon 6 of 6)	-2517	NM_145414	100609	Mm.281189	NM_145414	ENSMUSG00000000916	Nsun5	9830109N13Rik|AI326939|Nol1r|Wbscr20|Wbscr20a	NOL1/NOP2/Sun domain family, member 5	protein-coding	3.443	0.983	0.501	5.881	1.862	1.324	1.011	1.030	2.166	2.731	0.906	0.682	0.678	1.859	1.307	1.474	1.051	3.271	0.610	0.651	0.782	0.505	nan	0.286	2.476
11839	chr5	137546785	137552508	+	0	NA	Intergenic	RSINE1|SINE|B4	-3909	NM_031404	83766	Mm.31646	NM_031404	ENSMUSG00000029712	Actl6b	Actl6|ArpNa|Baf53b	actin-like 6B	protein-coding	8.099	2.350	1.107	6.396	7.422	4.352	8.475	9.995	5.907	11.015	2.802	2.587	6.725	12.921	7.192	5.940	5.176	6.058	2.605	2.260	1.821	2.167	nan	2.959	7.984
15642	chr9	123437127	123440339	+	0	NA	intron (NM_153168, intron 13 of 20)	intron (NM_153168, intron 13 of 20)	-39968	NM_013860	29806	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	7.816	7.833	2.702	8.335	nan	2.146	4.555	5.727	nan	8.892	5.351	3.515	nan	7.129	7.609	9.315	4.826	8.114	6.058	2.213	2.382	5.573	3.495	3.500	9.851
11166	chr5	35375486	35381217	+	0	NA	Intergenic	Intergenic	-10766	NM_010445	15371	Mm.358606	NM_010445	ENSMUSG00000067438	Hmx1	Nkx5-3	H6 homeobox 1	protein-coding	3.041	1.247	0.361	3.894	1.724	0.523	2.248	3.593	3.108	2.836	7.383	2.892	2.145	2.604	nan	2.925	nan	nan	0.727	0.461	0.341	1.420	0.573	0.249	3.360
3473	chr12	79306657	79308441	+	0	NA	intron (NM_001252562, intron 4 of 7)	MLT1F|LTR|ERVL-MaLR	10198	NM_001252562	19363	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	7.013	1.187	0.974	4.047	2.852	0.936	3.683	4.895	4.181	4.484	2.437	1.605	5.404	7.684	6.883	8.536	6.093	6.300	1.185	0.682	0.361	1.153	0.591	0.480	6.590
7884	chr19	55205294	55207997	+	0	NA	intron (NM_001081076, intron 16 of 20)	B1_Mur2|SINE|Alu	13967	NR_106146	102465990		NR_106146	ENSMUSG00000098289	Mir6715	Gm27474|mmu-mir-6715	microRNA 6715	ncRNA	0.783	nan	0.607	1.471	0.908	0.318	3.114	nan	2.648	4.449	0.542	0.506	0.889	1.809	nan	3.459	1.085	0.770	0.320	0.622	0.507	0.588	0.436	0.459	1.490
5868	chr16	20022493	20023858	+	0	NA	Intergenic	Intergenic	-40126	NM_183390	239743	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	3.001	5.345	5.074	0.842	0.946	0.364	1.844	1.152	1.523	nan	0.871	0.239	1.811	2.643	1.473	nan	1.721	2.049	0.491	0.421	0.239	0.314	0.318	0.156	1.412
9275	chr3	51130966	51134259	+	0	NA	Intergenic	Intergenic	-91835	NM_009834	12457	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	4.156	1.363	1.483	2.580	2.754	1.450	2.316	2.128	2.338	2.478	1.428	1.510	1.828	1.745	1.690	2.973	3.451	2.479	3.558	4.792	3.911	4.495	1.301	1.322	2.797
174	chr1	52820786	52823484	+	0	NA	Intergenic	ORR1E-int|LTR|ERVL-MaLR	-4447	NM_008384	16329	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	6.433	1.543	1.286	2.360	3.331	2.349	5.034	4.261	3.072	2.752	2.380	2.440	4.503	4.390	3.658	6.481	4.882	nan	nan	1.642	1.378	1.883	2.097	2.098	3.386
11232	chr5	53282320	53285305	+	0	NA	Intergenic	Intergenic	16706	NM_001145433	66278	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	0.785	0.890	0.509	0.656	0.539	0.264	0.557	0.743	1.098	0.955	3.347	0.983	0.451	0.869	0.853	nan	0.663	1.179	2.740	4.458	2.505	6.178	2.668	2.953	0.953
9280	chr3	51606237	51617686	+	0	NA	Intergenic	Intergenic	-49218	NM_174995	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.773	0.643	0.439	0.887	0.477	0.243	0.523	0.547	0.673	0.492	0.475	0.422	0.377	0.525	0.573	0.768	0.625	1.004	5.089	3.491	2.491	6.837	4.150	2.884	0.743
6793	chr17	66278690	66281626	+	0	NA	Intergenic	Lx7|LINE|L1	156638	NM_001003919	320209	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	4.167	1.523	0.832	3.260	2.224	1.622	2.614	4.954	nan	3.598	2.341	1.077	2.520	5.682	3.333	5.660	3.836	3.979	1.545	1.699	1.085	2.184	0.977	0.663	3.912
1571	chr10	86727090	86748169	+	0	NA	intron (NM_001003910, intron 8 of 15)	B2_Mm1a|SINE|B2	24864	NM_153595	103220	Mm.440762	NM_153595	ENSMUSG00000044937	Ttc41	AI449705|AU041509|Gnn	tetratricopeptide repeat domain 41	protein-coding	nan	0.343	0.424	0.286	0.168	0.070	0.229	0.233	0.195	0.163	0.153	0.183	0.155	nan	0.182	0.354	0.521	nan	8.241	4.494	2.936	nan	nan	5.261	0.263
10187	chr4	70166235	70172191	+	0	NA	Intergenic	L1_Mur3|LINE|L1	241222	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	2.735	0.450	0.327	1.284	1.490	0.641	1.388	1.754	1.481	1.772	1.189	0.609	1.481	2.348	1.741	nan	1.723	2.645	6.038	5.024	3.047	nan	nan	2.564	nan
13390	chr7	88134940	88142635	+	0	NA	Intergenic	Lx6|LINE|L1	-139298	NM_009982	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	6.572	10.079	5.046	7.203	5.712	4.331	5.223	7.748	4.945	9.423	4.417	2.811	5.406	7.850	5.790	nan	5.007	nan	3.523	2.965	2.559	nan	3.320	3.563	nan
7421	chr18	80746961	80748608	+	0	NA	intron (NM_001201569, intron 26 of 29)	intron (NM_001201569, intron 26 of 29)	-34713	NM_001164109	18018	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	1.955	nan	0.539	2.063	2.482	1.242	1.263	3.862	2.670	4.646	1.220	0.698	2.904	4.320	3.001	3.015	1.838	2.535	4.120	3.115	2.114	8.523	2.133	1.236	4.615
12169	chr6	38482606	38486253	+	0	NA	intron (NM_177185, intron 12 of 16)	intron (NM_177185, intron 12 of 16)	-22896	NR_106130	102466843		NR_106130	ENSMUSG00000098285	Mir7670	Gm27707|mmu-mir-7670	microRNA 7670	ncRNA	9.005	12.022	6.874	10.330	8.267	5.427	10.076	10.600	6.814	8.598	6.715	4.365	9.073	12.886	11.072	13.814	11.429	8.003	nan	5.651	5.268	nan	nan	6.357	10.292
13079	chr7	30174997	30185480	+	0	NA	TTS (NM_001033540)	TTS (NM_001033540)	-3933	NM_009944	12865	Mm.423030	NM_009944	ENSMUSG00000074218	Cox7a1	COX7A|COX7AH|COX7AM	cytochrome c oxidase subunit VIIa 1	protein-coding	3.182	0.748	0.348	3.287	1.590	0.929	5.420	6.961	4.128	5.008	2.280	3.002	4.221	4.037	5.153	5.102	2.513	5.837	3.887	2.121	1.653	6.015	2.545	1.897	5.051
10607	chr4	131749178	131754890	+	0	NA	Intergenic	Intergenic	86244	NM_011214	19273	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding	2.386	2.171	2.012	2.262	3.648	3.798	1.656	2.101	2.179	2.119	1.297	1.066	1.520	2.101	nan	1.863	1.675	2.678	1.976	1.832	2.181	1.262	1.414	2.260	1.593
7554	chr19	10095755	10098522	+	0	NA	intron (NM_019699, intron 1 of 11)	intron (NM_019699, intron 1 of 11)	4365	NM_019699	56473	Mm.38901	NM_019699	ENSMUSG00000024665	Fads2	2900042M13Rik|Fadsd2	fatty acid desaturase 2	protein-coding	6.095	2.029	1.080	2.969	1.500	0.605	2.672	3.011	2.336	2.959	1.074	0.618	2.220	3.935	2.981	3.485	3.606	2.942	0.673	0.874	0.709	0.810	0.881	0.342	4.963
9909	chr4	8160218	8162045	+	0	NA	intron (NM_007592, intron 8 of 8)	Lx3_Mus|LINE|L1	77910	NM_007592	12319	Mm.119320	NM_007592	ENSMUSG00000041261	Car8	AW546993|Ca8|Cals|Cals1|Carp|wdl	carbonic anhydrase 8	protein-coding	1.696	1.073	1.204	2.556	4.167	1.985	1.451	3.576	1.696	1.595	0.253	0.516	1.327	1.772	2.100	2.527	2.012	2.937	7.865	nan	1.531	0.884	9.842	6.722	2.755
3681	chr12	103995329	103997633	+	0	NA	TTS (NM_027997)	TTS (NM_027997)	-6524	NM_001166350	380780	Mm.201338	NM_199314	ENSMUSG00000063232	Serpina11	Gm895	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11	protein-coding	11.057	12.477	6.007	7.323	4.205	1.938	6.965	6.363	nan	6.867	5.579	4.101	6.320	8.951	7.984	9.947	6.820	6.879	5.983	4.817	3.187	6.673	6.005	4.316	16.122
7805	chr19	45087215	45095544	+	0	NA	Intergenic	MERVL-int|LTR|ERVL	15240	NM_178929	107250	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	9.737	2.941	1.176	7.549	6.990	3.837	11.059	12.225	5.646	8.753	6.235	3.492	7.238	12.035	9.178	10.770	10.367	nan	2.591	3.141	2.955	4.538	4.414	3.905	15.209
52	chr1	21027305	21030250	+	0	NA	intron (NM_177409, intron 2 of 10)	MLT1B|LTR|ERVL-MaLR	50448	NM_177409	170829	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	1.405	7.567	2.557	2.836	1.566	0.773	2.449	0.569	0.994	0.957	0.417	0.306	1.486	3.469	3.717	1.142	0.673	1.372	0.810	0.875	0.376	0.751	0.477	0.380	1.390
8115	chr2	31842574	31852705	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-1634	NM_178887	98970	Mm.32080	NM_178887	ENSMUSG00000026841	Fibcd1	AI448887	fibrinogen C domain containing 1	protein-coding	7.796	1.035	0.665	3.521	3.794	2.322	9.394	8.046	nan	9.609	0.965	0.672	9.772	9.456	8.267	9.788	10.250	8.098	0.864	0.669	0.581	0.438	0.456	0.406	12.046
10468	chr4	120496565	120499301	+	0	NA	intron (NM_001159630, intron 9 of 17)	B3|SINE|B2	-34298	NM_177570	194219	Mm.29788	NM_177570	ENSMUSG00000047518	Slfnl1	4933406A14Rik	schlafen like 1	protein-coding	9.190	10.906	3.951	8.219	5.816	3.871	6.071	6.860	4.548	9.021	5.831	3.203	5.590	7.860	7.244	7.292	5.294	6.943	7.884	6.619	5.210	8.804	7.737	7.441	10.128
11695	chr5	123575634	123596154	+	0	NA	intron (NM_001291229, intron 19 of 23)	RSINE1|SINE|B4	-12879	NM_029929	77573	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	8.959	13.310	4.932	10.025	5.223	2.951	9.258	7.528	6.497	nan	6.677	3.651	7.706	11.710	8.980	9.157	nan	nan	nan	3.583	3.050	6.290	nan	4.048	nan
12695	chr6	124958104	124960485	+	0	NA	3' UTR (NM_012003, exon 8 of 8)	3' UTR (NM_012003, exon 8 of 8)	6103	NM_012003	26894	Mm.244536	NM_012003	ENSMUSG00000030127	Cops7a	D6Ertd35e	COP9 signalosome subunit 7A	protein-coding	8.522	10.589	5.606	7.203	6.259	5.185	11.077	9.504	4.902	9.853	5.745	3.751	6.986	9.355	7.937	10.497	9.813	7.393	4.754	3.855	5.847	4.392	4.969	7.112	11.722
3842	chr13	11956784	11961685	+	0	NA	intron (NM_023868, intron 1 of 104)	intron (NM_023868, intron 1 of 104)	147711	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.407	0.580	0.372	0.484	0.197	0.152	0.150	0.328	0.219	0.285	0.154	0.082	0.090	0.085	0.248	0.395	0.223	0.374	4.859	3.208	2.765	4.042	6.057	4.897	0.385
11162	chr5	35291671	35293219	+	0	NA	Intergenic	Intergenic	13879	NM_007418	11553	Mm.57205	NM_007418	ENSMUSG00000045318	Adra2c	Adra-2c|[a]2C|alpha2-C4|alpha2C	adrenergic receptor, alpha 2c	protein-coding	5.161	6.794	2.130	7.672	2.329	1.883	3.184	2.569	2.912	7.079	3.660	1.633	2.110	3.755	nan	4.859	2.697	4.850	3.221	3.779	2.564	4.687	5.013	4.251	6.969
13972	chr8	4213047	4214863	+	0	NA	exon (NM_207203, exon 6 of 7)	exon (NM_207203, exon 6 of 7)	3357	NM_207203	73072	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	14.116	4.332	3.828	4.427	8.238	3.873	14.648	17.249	3.120	9.285	4.837	5.684	9.860	18.389	7.277	10.434	20.108	4.687	4.639	11.421	4.722	4.414	11.517	6.893	13.947
12754	chr6	129216579	129219056	+	0	NA	Intergenic	L1M4|LINE|L1	20228	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.927	nan	0.368	0.461	0.270		1.380	2.232	0.866	0.538	5.794	3.177	0.928	0.946	0.900	nan	0.712	0.914	0.936	0.448	0.099	0.585	0.288	0.286	0.249
12561	chr6	108376200	108377889	+	0	NA	intron (NM_010585, intron 14 of 61)	intron (NM_010585, intron 14 of 61)	-112699	NR_106121	102465766		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	5.003	1.700	0.737	3.835	2.353	1.168	4.604	4.521	4.582	5.146	2.140	1.884	7.585	5.658	4.974	6.952	5.953	5.138	nan	1.497	0.609	1.922	0.962	0.772	3.341
3358	chr12	57790964	57794984	+	0	NA	Intergenic	Intergenic	-130063	NR_131112	217601	Mm.488987	NR_131112		BC042761	-	cDNA sequence BC042761	ncRNA	0.260	nan	0.295	0.167	0.186	0.060	0.366	0.213	0.440	0.386	1.149	0.566	0.368	0.353	nan	nan	0.298	nan	0.454	4.300	3.215	5.910	0.282	0.245	0.716
593	chr1	132957208	132959019	+	0	NA	Intergenic	Intergenic	67303	NR_126506	17248	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	4.496	2.900	1.402	2.840	1.781	1.012	2.791	3.348	2.641	4.468	1.594	1.107	3.269	4.621	3.557	7.288	3.872	6.036	1.718	1.502	0.781	2.631	1.043	0.412	4.656
188	chr1	54978091	54983835	+	0	NA	Intergenic	MTA_Mm-int|LTR|ERVL-MaLR	46515	NM_031179	81898	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	5.747	10.117	2.800	6.965	2.427	1.428	3.092	1.826	3.421	6.184	2.914	1.439	2.865	3.809	4.352	5.896	3.034	5.259	1.985	1.830	2.299	3.435	1.396	1.833	6.212
15421	chr9	100354013	100355879	+	0	NA	Intergenic	Intergenic	131527	NM_001033543	213208	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	4.991	3.128	1.197	2.891	2.305	1.198	3.189	7.725	2.982	3.315	2.997	1.456	2.717	4.612	3.098	3.315	2.586	2.554	1.624	3.506	1.592	2.092	2.427	1.283	5.006
7472	chr19	4079376	4081826	+	0	NA	Intergenic	Intergenic	-1887	NM_001160253	29866	Mm.46268	NM_013878	ENSMUSG00000024857	Cabp2	-	calcium binding protein 2	protein-coding	2.048	1.031	0.505	2.124	1.814	1.129	2.218	4.178	nan	2.558	0.762	0.530	2.417	5.323	2.441	3.111	2.438	2.748	3.116	3.559	2.198	4.821	5.574	3.827	3.617
10123	chr4	58923053	58926199	+	0	NA	Intergenic	RLTR19-int|LTR|ERVK	-11901	NM_172381	230249	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|mKIAA0368	expressed sequence AI314180	protein-coding	8.706	nan	3.366	11.144	6.488	5.062	7.251	7.702	5.721	17.257	6.597	5.093	6.395	9.312	9.020	9.737	4.795	10.217	7.758	3.661	4.500	14.847	4.570	6.380	17.445
8604	chr2	121238234	121242418	+	0	NA	intron (NM_001290830, intron 11 of 26)	HAL1|LINE|L1	31081	NM_001290830	27223	Mm.215389	NM_013735	ENSMUSG00000043909	Trp53bp1	53BP1|Tp53bp1|m53BP1|p53BP1	transformation related protein 53 binding protein 1	protein-coding	7.864	10.326	4.472	7.113	4.976	4.411	7.953	8.086	5.500	8.799	4.615	3.665	6.789	7.831	6.873	9.503	8.618	7.662	4.983	3.631	4.787	4.341	4.674	5.654	9.696
402	chr1	89447322	89449159	+	0	NA	Intergenic	Intergenic	-6571	NM_178119	347722	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	1.762	0.836	0.672	2.271	4.005	2.518	2.685	5.252	2.525	2.404	3.258	1.757	3.337	3.754	2.871	5.272	1.287	3.356	0.554	0.339	0.623	nan	0.357	0.392	2.213
5221	chr15	59355173	59359521	+	0	NA	intron (NM_153548, intron 9 of 28)	intron (NM_153548, intron 9 of 28)	16805	NM_153548	223593	Mm.218665	NM_153548	ENSMUSG00000022350	Washc5	AL022848|C76463|E430025E21Rik|Kiaa0196|mKIAA0196|strumpellin	WASH complex subunit 5	protein-coding	3.422	8.906	3.884	2.762	2.401	1.084	nan	6.205	nan	nan	4.188	4.180	5.034	3.842	5.258	3.280	2.668	4.975	4.664	1.729	0.986	3.555	2.482	1.510	2.452
12704	chr6	125326933	125331168	+	0	NA	intron (NM_011324, intron 1 of 11)	intron (NM_011324, intron 1 of 11)	7710	NM_011324	20276	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	2.846	nan	0.338	2.496	1.373	0.841	6.821	8.189	1.618	2.621	5.465	2.821	5.391	4.322	6.388	7.995	4.871	3.634	1.188	0.938	1.090	1.886	1.181	1.164	5.389
1940	chr11	6054131	6057854	+	0	NA	intron (NM_007595, intron 1 of 20)	L1MB7|LINE|L1	9756	NM_001174054	12323	Mm.439733	NM_007595	ENSMUSG00000057897	Camk2b	CaMKII	calcium/calmodulin-dependent protein kinase II, beta	protein-coding	nan	1.781	0.996	1.106	0.461	0.232	0.329	0.604	0.633	0.762	0.762	0.336	0.359	0.457	0.542	0.770	0.528	0.971	2.787	nan	1.021	4.905	1.248	0.540	0.613
10748	chr4	137420709	137424180	+	0	NA	intron (NM_026419, intron 6 of 7)	intron (NM_026419, intron 6 of 7)	8076	NM_026419	67868	Mm.297477	NM_026419	ENSMUSG00000023433	Cela3b	0910001F22Rik|2310074F01Rik|AI504000|Ela3|Ela3b	chymotrypsin-like elastase family, member 3B	protein-coding	2.364	2.229	0.671	4.826	2.580	1.288	4.096	2.263	nan	2.625	1.958	0.923	3.239	5.106	3.840	5.088	1.960	3.080	3.834	2.315	1.527	6.383	nan	2.886	7.122
1641	chr10	94847694	94852945	+	0	NA	intron (NM_018797, intron 10 of 30)	intron (NM_018797, intron 10 of 30)	94259	NM_018797	54712	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	8.916	1.940	0.951	7.358	4.812	2.725	6.035	4.433	7.928	7.779	nan	3.157	6.887	8.556	8.202	9.483	7.547	10.336	nan	0.792	0.678	nan	0.663	0.851	10.414
7005	chr18	7607312	7608961	+	0	NA	intron (NM_001081287, intron 1 of 16)	A-rich|Low_complexity|Low_complexity	18727	NM_001081287	75739	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	3.203	3.240	3.141	3.254	3.696	3.701	2.186	5.145	3.593	2.338	3.370	2.728	3.353	5.663	3.312	4.965	3.856	2.876	1.826	2.545	1.688	1.753	1.911	2.735	1.989
15291	chr9	72485027	72494817	+	0	NA	intron (NM_009359, intron 2 of 11)	ORR1E|LTR|ERVL-MaLR	2037	NM_009359	21778	Mm.14485	NM_009359	ENSMUSG00000090626	Tex9	Gm19407|tsec-1	testis expressed gene 9	protein-coding	6.071	1.464	0.880	4.152	5.708	3.962	6.771	5.906	4.963	6.002	4.401	3.284	6.386	8.449	nan	5.952	5.127	5.010	nan	2.419	2.010	1.955	2.904	2.940	6.484
12139	chr6	32490214	32496944	+	0	NA	intron (NM_175750, intron 3 of 31)	intron (NM_175750, intron 3 of 31)	-17562	NR_040277	319849	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	5.792	0.762	0.421	2.464	1.855	1.065	8.558	7.109	5.156	5.710	1.419	0.822	8.777	6.252	7.032	10.527	5.968	6.666	nan	0.605	0.455	0.765	0.583	0.452	6.880
640	chr1	135132934	135135418	+	0	NA	intron (NM_177081, intron 2 of 9)	intron (NM_177081, intron 2 of 9)	1451	NM_177081	320139	Mm.258388	NM_177081	ENSMUSG00000031506	Ptpn7	BPTP-4|C920001D21Rik|HEPTP|LC-PTP|LPTP	protein tyrosine phosphatase, non-receptor type 7	protein-coding	4.611	1.559	0.695	nan	1.988	1.348	5.965	4.145	1.978	2.742	2.041	1.604	4.806	4.784	4.145	7.096	4.232	3.420	1.000	1.058	0.656	0.488	1.121	0.675	5.586
13791	chr7	135754056	135756722	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	-39010	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	4.793	7.447	2.029	7.068	2.040	1.517	4.549	6.948	nan	5.477	4.337	2.757	6.516	6.233	5.771	6.756	3.430	6.647	3.130	1.626	1.070	4.144	1.748	1.982	7.447
6139	chr16	57547557	57553451	+	0	NA	intron (NM_001177871, intron 1 of 1)	intron (NM_001177871, intron 1 of 1)	1262	NM_001177871	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	4.728	5.597	2.641	7.200	2.735	1.269	1.422	1.885	3.363	4.983	3.030	3.361	1.635	2.984	2.642	3.591	2.229	5.634	nan	1.362	1.034	1.552	0.584	0.612	2.827
1384	chr10	67594783	67600765	+	0	NA	Intergenic	Lx8|LINE|L1	-48819	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	8.163	2.369	0.762	7.085	4.520	2.100	4.636	4.795	5.366	5.660	3.141	2.560	9.153	10.490	6.328	7.648	5.590	8.598	1.712	1.641	1.263	2.831	1.294	1.008	8.869
9055	chr2	169439177	169441533	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-193291	NM_080455	228911	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	4.148	0.443	0.247	1.224	0.325		4.576	6.801	2.611	1.758	4.100	2.821	4.599	2.744	4.158	5.098	6.301	2.626	nan	0.750	0.520	0.864	1.084	1.237	5.244
11919	chr5	143815558	143821527	+	0	NA	Intergenic	Intergenic	-53320	NM_013557	15467	Mm.389709	NM_013557	ENSMUSG00000029613	Eif2ak1	HCR|Hri	eukaryotic translation initiation factor 2 alpha kinase 1	protein-coding	6.404	4.958	2.195	4.634	2.876	1.960	5.804	3.697	3.439	4.009	2.586	1.237	5.226	8.375	6.522	4.454	4.898	3.977	1.375	1.646	1.614	1.199	0.755	0.539	3.860
5205	chr15	58494982	58499652	+	0	NA	Intergenic	L1MA7|LINE|L1	81849	NM_145959	210998	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0.384	0.768	0.275	nan	0.102	0.021	nan	nan	nan	nan	0.194	0.085	0.142	0.226	0.343	nan	0.334	0.552	4.717	2.056	1.102	4.536	2.084	1.105	0.303
7565	chr19	10335470	10337328	+	0	NA	Intergenic	Intergenic	-31522	NM_198114	269060	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0.998	1.230	0.163	1.217	0.529	0.198	1.548	3.195	2.139	2.424	0.445	0.382	2.486	4.083	3.430	3.792	1.498	3.693	2.397	1.139	0.832	6.075	2.193	1.209	2.435
9158	chr3	19354057	19360189	+	0	NA	Intergenic	L1Md_F|LINE|L1	-45801	NM_001122759	18583	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	3.208	nan	0.830	1.906	2.238	1.049	3.675	3.099	5.263	4.369	5.222	4.230	4.939	5.087	3.585	3.079	2.969	6.317	0.801	0.488	0.220	0.540	0.423	0.316	1.727
2068	chr11	32432421	32437153	+	0	NA	Intergenic	Intergenic	-20585	NM_173784	327900	Mm.260956	NM_173784	ENSMUSG00000044949	Ubtd2	4930571L24|9630054F20Rik|AI645720	ubiquitin domain containing 2	protein-coding	3.841	9.413	3.451	nan	2.607	2.511	2.252	2.705	2.617	3.489	1.813	1.422	1.472	2.811	3.485	3.898	nan	3.035	1.718	1.909	2.061	1.982	1.604	1.276	4.165
8531	chr2	116747208	116751311	+	0	NA	Intergenic	Intergenic	-129432	NM_026104	67356	Mm.131623	NM_026104	ENSMUSG00000027355	Tmco5	1700095F04Rik|Tmco5a	transmembrane and coiled-coil domains 5	protein-coding	8.434	0.577	0.507	4.505	3.247	1.165	10.391	11.019	8.996	10.445	3.225	1.242	12.352	10.893	10.041	12.351	10.731	8.852	0.561	0.707	0.468	0.640	0.579	0.395	11.617
9287	chr3	51806863	51812404	+	0	NA	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	148454	NM_001310482	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	1.635	1.458	0.664	2.374	1.728	0.959	2.617	4.291	1.765	1.449	2.047	1.097	2.195	2.208	3.078	3.669	2.138	3.023	3.444	2.596	1.720	3.640	4.718	3.585	3.027
6800	chr17	66753950	66755669	+	0	NA	intron (NM_008984, intron 18 of 30)	intron (NM_008984, intron 18 of 30)	-160187	NM_028998	74556	Mm.218634	NM_028998	ENSMUSG00000024105	Themis3	9130404H23Rik	thymocyte selection associated family member 3	protein-coding	4.268	0.418	0.429	5.496	2.858	2.400	6.802	4.308	5.147	5.407	1.470	1.166	4.786	7.282	8.234	8.257	3.607	7.812	0.795	0.526	1.321	0.949	0.651	0.804	9.148
1464	chr10	77696355	77703851	+	0	NA	intron (NM_001287074, intron 1 of 11)	ORR1E-int|LTR|ERVL-MaLR	-6484	NR_026831	16697	Mm.482251	NR_026831	ENSMUSG00000069584	Gm10272	ENSMUSG00000069584|Krtap12-4	keratin associated protein 12-4	pseudo	0.972	1.306	0.637	nan	0.678	0.407	0.577	0.647	0.689	0.623	1.750	0.866	0.500	0.635	nan	0.934	0.879	0.947	nan	2.529	1.709	5.420	1.318	0.986	1.205
10632	chr4	132538336	132539883	+	0	NA	intron (NM_172400, intron 2 of 8)	intron (NM_172400, intron 2 of 8)	3550	NM_172400	68598	Mm.29685	NM_172400	ENSMUSG00000054405	Dnajc8	1110021D09Rik|2010009J04Rik|AL024084|AU019262|AU044514	DnaJ heat shock protein family (Hsp40) member C8	protein-coding	3.605	2.700	1.649	4.334	3.280	2.824	2.699	2.244	1.674	1.762	2.216	1.160	1.245	3.305	2.621	2.444	1.207	2.006	4.926	4.259	4.177	6.149	3.699	4.302	3.200
3440	chr12	76628980	76634933	+	0	NA	intron (NM_013675, intron 3 of 35)	intron (NM_013675, intron 3 of 35)	78591	NM_013675	20741	Mm.32881	NM_013675	ENSMUSG00000021061	Sptb	AI842465|D330027P03Rik|Gm1301|Spnb-1|Spnb1|ja|jaundiced|mKIAA4219	spectrin beta, erythrocytic	protein-coding	7.071	2.261	1.890	1.887	2.522	1.789	7.647	4.708	3.882	2.973	3.706	3.901	6.602	nan	6.260	5.404	5.803	4.915	1.473	1.134	0.803	1.081	1.176	0.769	3.536
12602	chr6	113884376	113887675	+	0	NA	intron (NM_001347365, intron 2 of 23)	intron (NM_001347365, intron 2 of 23)	5514	NM_001036684	11941	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	1.421	0.551	0.246	3.773	1.296	0.455	0.514	0.411	3.126	2.813	0.533	0.577	1.892	1.557	1.337	3.891	0.831	4.126	1.158	0.633	0.535	0.941	nan	0.768	3.349
4428	chr13	113777517	113780370	+	0	NA	Intergenic	RLTR20A4|LTR|ERVK	-15565	NM_172595	218639	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	1.278	2.316	0.712	2.344	1.028	0.609	0.395	1.991	1.630	3.874	0.695	0.664	0.535	0.780	1.316	3.596	2.367	2.136	1.559	0.622	0.730	2.267	0.868	1.107	4.231
7058	chr18	21159306	21161970	+	0	NA	intron (NM_001033445, intron 3 of 5)	intron (NM_001033445, intron 3 of 5)	88294	NM_008586	17288	Mm.2682	NM_008586	ENSMUSG00000024313	Mep1b	Mep-1b	meprin 1 beta	protein-coding	8.575	11.303	2.802	8.984	4.552	2.863	6.965	7.512	4.381	10.294	5.371	3.182	6.091	6.589	6.689	8.407	6.514	8.410	5.939	3.162	5.039	6.186	4.210	5.401	12.748
4354	chr13	103361194	103365660	+	0	NA	Intergenic	Intergenic	-28935	NM_175171	328329	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	nan	nan	0.466	2.030	1.058	0.608	1.332	3.038	nan	2.570	6.577	1.919	1.744	2.867	1.546	2.084	1.391	nan	1.106	1.076	0.262	nan	0.989	0.699	1.612
5835	chr16	17242794	17245956	+	0	NA	intron (NM_178922, intron 1 of 2)	URR1A|DNA|hAT-Charlie	10788	NM_178922	58180	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	6.647	0.816	0.495	0.676	0.760	0.857	2.266	3.528	0.896	nan	0.364	0.464	1.647	2.097	1.435	nan	2.230	2.679	0.572	0.475	0.516	0.586	0.583	0.771	4.073
3426	chr12	74387100	74388612	+	0	NA	Intergenic	L1Md_T|LINE|L1	90382	NM_198866	386753	Mm.341686	NM_198866	ENSMUSG00000029878	Dbpht2	Spot2	DNA binding protein with his-thr domain	protein-coding	8.384	8.224	3.232	8.232	1.887	0.747	3.526	4.238	4.516	6.615	5.006	2.351	4.570	4.930	6.595	7.926	3.835	7.108	5.389	1.363	1.325	5.751	2.436	1.873	12.129
2018	chr11	20957599	20962548	+	0	NA	Intergenic	RMER15|LTR|ERVL	-128965	NM_173752	216551	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	4.397	nan	0.684	4.531	4.942	3.039	4.744	5.615	4.655	4.851	1.245	1.039	6.442	8.322	5.893	5.136	4.032	6.287	1.100	0.906	0.691	1.346	0.958	0.630	2.782
8374	chr2	75551771	75555906	+	0	NA	Intergenic	Intergenic	-105421	NM_146130	229279	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	3.345	1.107	0.613	nan	1.107	1.028	4.800	5.461	3.774	3.461	2.470	3.466	5.277	4.334	4.355	6.873	5.850	4.795	1.979	0.812	0.704	0.713	1.192	1.622	nan
464	chr1	94727880	94729751	+	0	NA	Intergenic	L1Md_T|LINE|L1	-68627	NR_040473	74689	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	3.720	6.315	1.647	3.134	0.744	0.568	6.961	3.167	2.163	10.143	3.135	2.133	5.657	7.390	6.643	6.024	1.768	3.294	6.317	1.078	3.138	7.076	3.046	5.024	10.742
12336	chr6	81596192	81599172	+	0	NA	Intergenic	Intergenic	297981	NR_106091	102465711		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	5.199	0.263	0.280	1.337	2.054	0.743	8.232	3.625	1.739	2.186	2.562	0.506	5.480	4.804	5.486	7.396	6.256	4.582	0.572	0.748	0.601	0.347	0.400	0.221	nan
12675	chr6	121012932	121015388	+	0	NA	intron (NR_138097, intron 17 of 18)	intron (NR_138097, intron 17 of 18)	-50304	NR_138098	100043793	Mm.448053	NR_138098		Gm4651	-	predicted gene 4651	ncRNA	5.486	3.330	0.567	2.563	0.488	0.305	2.420	5.726	1.727	2.329	5.597	3.000	1.147	nan	5.195	3.207	2.890	2.195	6.383	2.307	1.676	4.460	nan	2.311	5.536
2977	chr11	115242252	115246317	+	0	NA	3' UTR (NM_001033393, exon 10 of 10)	3' UTR (NM_001033393, exon 10 of 10)	22959	NM_010350	14813	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	2.811	1.892	0.549	5.093	1.543	1.022	nan	nan	2.826	3.983	1.024	1.438	2.764	3.159	3.769	4.010	2.169	3.942	2.830	nan	1.179	5.597	1.292	1.245	3.096
2011	chr11	20494295	20495421	+	0	NA	Intergenic	ID4_|SINE|ID	-48395	NM_021372	58172	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	3.011	nan	0.903	2.766	0.640	0.870	3.031	2.010	1.775	1.551	5.387	2.921	1.389	2.964	2.469	2.170	1.816	2.103	1.228	0.673	0.587	1.843	0.496	0.750	1.737
9901	chr4	6399423	6400408	+	0	NA	intron (NM_010945, intron 27 of 30)	Lx10|LINE|L1	34235	NM_001098227	53378	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	4.074	1.530	0.922	2.250	1.432	0.724	4.472	2.258	3.185	2.522	2.649	3.721	8.289	3.615	4.788	7.207	3.783	5.781	3.421	2.352	1.266	5.047	4.343	4.416	3.372
3452	chr12	77468096	77474761	+	0	NA	intron (NR_045554, intron 11 of 11)	intron (NR_045554, intron 11 of 11)	61287	NM_001252616	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	9.544	16.595	6.088	9.733	4.873	3.850	7.250	5.536	5.165	12.012	7.415	4.562	7.144	9.930	7.853	nan	6.355	7.969	4.879	2.637	4.047	5.684	3.021	5.049	14.947
6	chr1	6378799	6381248	+	0	NA	intron (NM_001195732, intron 1 of 4)	intron (NM_001195732, intron 1 of 4)	20692	NM_001195732	620393	Mm.388992	NM_001195732	ENSMUSG00000087247	Fam150a	EG620393	family with sequence similarity 150, member A	protein-coding	4.153	0.429	0.533	1.577	1.106	1.147	1.188	0.826	2.820	3.508	0.450	0.441	2.913	2.668	1.761	3.427	3.674	3.814	0.927	0.766	0.837	0.722	0.719	0.820	1.781
8334	chr2	70780731	70784928	+	0	NA	intron (NM_172664, intron 2 of 19)	B3|SINE|B2	42651	NM_172664	228012	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0.579	8.324	4.899	0.741	0.250	0.117	0.526	0.533	0.645	0.682	0.217	0.148	0.824	0.421	0.904	1.268	1.146	1.317	0.815	0.405	0.321	0.621	0.418	0.614	1.363
3867	chr13	20296723	20301558	+	0	NA	intron (NM_080288, intron 13 of 21)	AT_rich|Low_complexity|Low_complexity	-173850	NM_198093	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	2.367	8.942	5.195	1.493	0.580	0.155	0.948	1.798	1.610	1.256	0.529	0.621	1.308	nan	1.387	1.454	nan	1.989	1.028	1.055	0.728	1.545	0.716	0.540	nan
14754	chr8	125958830	125961282	+	0	NA	Intergenic	Intergenic	-35046	NM_008430	16525	Mm.10800	NM_008430	ENSMUSG00000033998	Kcnk1	AI788889|TWIK-1	potassium channel, subfamily K, member 1	protein-coding	0.583	nan	0.771	nan	0.582	0.432	nan	nan	0.430	0.466	0.336	0.823	0.395	0.554	nan	0.809	1.092	nan	8.614	11.566	11.722	11.455	11.662	10.101	nan
8194	chr2	35555921	35562734	+	0	NA	promoter-TSS (NR_045894)	promoter-TSS (NR_045894)	-625	NR_045894	100042194	Mm.330165	NR_045894	ENSMUSG00000086555	Gm13446	OTTMUSG00000012261	predicted gene 13446	ncRNA	4.485	1.732	0.464	3.771	4.621	2.476	4.083	7.301	2.986	3.167	3.874	1.753	4.015	4.986	3.670	4.619	4.076	4.447	1.118	0.920	0.728	1.080	0.683	0.602	6.254
1304	chr10	57830860	57839932	+	0	NA	Intergenic	B2_Mm1t|SINE|B2	40852	NM_020561	57319	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	5.936	3.339	1.909	3.772	3.252	2.117	2.396	4.656	3.678	3.835	3.202	2.073	2.791	4.767	3.468	3.789	3.359	4.537	nan	2.372	1.830	3.492	2.333	2.100	nan
8523	chr2	113313080	113314718	+	0	NA	intron (NR_035479, intron 2 of 3)	L1_Mus4|LINE|L1	-13837	NM_001285458	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.477	0.525	0.794	0.311	0.371	0.298	0.779	0.885	0.674	0.294	0.328	0.447	nan	0.531	0.487	nan	0.796	0.331	1.040	1.470	1.128	0.752	2.975	4.816	nan
8570	chr2	119086966	119090157	+	0	NA	intron (NM_029617, intron 14 of 23)	PB1D11|SINE|Alu	-24256	NM_011234	19361	Mm.330492	NM_011234	ENSMUSG00000027323	Rad51	AV304093|Rad51a|Reca	RAD51 recombinase	protein-coding	3.939	0.564	0.683	1.656	1.531	0.679	2.344	5.508	1.114	1.286	3.773	1.586	2.727	3.083	3.021	nan	2.746	2.286	2.871	1.975	1.653	2.479	2.551	1.246	nan
7656	chr19	24394609	24401894	+	0	NA	intron (NM_008846, intron 3 of 14)	Lx2|LINE|L1	79223	NM_026520	68034	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|ENSMUSG00000051082|Gm9849	family with sequence similarity 122, member A	protein-coding	nan	0.587	0.453	nan	4.059	2.117	4.130	nan	4.432	5.450	nan	0.574	4.166	6.339	5.303	5.160	4.442	6.435	nan	1.256	1.030	1.973	nan	1.390	5.336
15547	chr9	116045413	116047005	+	0	NA	intron (NM_028638, intron 14 of 14)	(TA)n|Simple_repeat|Simple_repeat	129154	NM_029575	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	4.850	6.621	1.519	4.100	2.495	1.216	1.303	1.480	2.089	3.078	1.178	1.571	1.269	2.219	2.698	3.527	1.210	4.534	1.454	1.697	0.096	1.185	nan	0.673	3.888
9649	chr3	104819334	104827835	+	0	NA	3' UTR (NM_009797, exon 10 of 10)	3' UTR (NM_009797, exon 10 of 10)	-5021	NM_001163440	17454	Mm.1597	NM_008619	ENSMUSG00000002227	Mov10	C77703|Mov-10	Moloney leukemia virus 10	protein-coding	9.676	2.056	1.594	8.087	5.799	4.065	4.099	4.600	5.882	7.061	2.363	1.502	3.404	7.121	nan	4.774	3.352	8.139	1.132	1.690	1.329	1.362	1.765	1.463	6.036
8017	chr2	25110531	25112193	+	0	NA	Intergenic	Intergenic	-16157	NM_172204	241275	Mm.218774	NM_172204	ENSMUSG00000036805	Noxa1	NY-CO-31|SDCCAG31	NADPH oxidase activator 1	protein-coding	8.875	10.034	2.368	9.909	3.463	1.508	6.584	10.652	4.117	6.853	5.010	3.699	7.655	8.107	9.233	12.618	7.156	9.697	4.204	1.392	1.502	4.513	1.899	2.453	16.308
10306	chr4	99713296	99715068	+	0	NA	Intergenic	Intergenic	-1448	NM_001081264	320438	Mm.32408	NM_001081264	ENSMUSG00000073792	Alg6	E230028F23Rik	asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase)	protein-coding	9.511	nan	1.694	5.477	5.771	3.044	6.240	3.454	6.460	7.359	0.562	1.337	6.881	7.468	4.256	7.579	7.824	5.669	0.834	3.142	2.324	nan	0.684	0.852	10.217
11285	chr5	65927290	65930634	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-38162	NM_001081104	231252	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	8.363	11.372	4.517	9.974	6.507	4.324	8.843	7.301	7.047	11.015	7.181	4.544	7.284	10.761	8.958	9.168	6.422	8.317	7.175	3.184	3.005	nan	4.519	5.334	10.505
10778	chr4	138521787	138533314	+	0	NA	Intergenic	Intergenic	72402	NM_025451	66259	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding	6.495	5.516	1.861	7.182	4.437	2.701	8.183	6.537	nan	8.444	4.321	4.184	8.742	8.897	8.141	10.534	4.081	8.072	3.197	1.316	1.498	4.469	nan	3.088	12.717
11056	chr5	22936103	22943961	+	0	NA	intron (NM_001081231, intron 1 of 3)	Lx9|LINE|L1	-193148	NR_027362	330052	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	12.155	15.145	5.111	12.202	7.117	3.714	10.378	9.878	8.490	13.097	8.824	4.373	9.961	12.851	11.318	10.697	8.342	10.592	8.151	4.129	3.026	7.451	4.923	4.099	11.936
5763	chr16	5073175	5075442	+	0	NA	intron (NM_026666, intron 13 of 18)	intron (NM_026666, intron 13 of 18)	24240	NM_026666	170644	Mm.66356	NM_026666	ENSMUSG00000039473	Ubn1	1110029L11Rik|2610108L02Rik|AA673476|AW124741	ubinuclein 1	protein-coding	2.806	0.957	0.346	1.640	1.730	0.943	nan	1.886	2.198	2.183	1.150	0.641	2.846	4.622	3.569	4.060	1.629	3.952	0.691	0.333	0.468	0.542	0.710	0.325	3.199
12838	chr6	144729769	144730763	+	0	NA	Intergenic	Intergenic	57398	NR_040519	66760	Mm.233631	NR_040519	ENSMUSG00000085785	Sox5os3	4933425H06Rik	SRY (sex determining region Y)-box 5, opposite strand 3	ncRNA	5.044	3.827	0.868	7.148	4.612	4.891	4.009	2.618	3.268	5.793	1.380	1.475	2.310	3.961	4.410	3.907	2.184	5.870	3.106	nan	4.033	3.487	3.258	3.970	6.883
4381	chr13	108678161	108683717	+	0	NA	intron (NM_011056, intron 1 of 16)	intron (NM_011056, intron 1 of 16)	26762	NM_011056	238871	Mm.434429	NM_011056	ENSMUSG00000021699	Pde4d	9630011N22Rik|Dpde3	phosphodiesterase 4D, cAMP specific	protein-coding	7.936	nan	1.308	9.721	4.051	3.511	4.100	5.461	nan	14.779	5.773	3.289	5.879	7.756	7.552	8.532	3.616	nan	3.813	1.430	3.253	nan	2.302	3.438	14.008
5953	chr16	25898567	25902942	+	0	NA	Intergenic	Intergenic	98838	NM_001127264	22061	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	2.437	0.588	0.217	1.237	0.928	0.305	2.299	8.303	2.168	1.790	5.944	2.810	3.386	2.603	2.127	2.748	2.398	2.795	0.881	0.641	0.211	0.615	nan	0.193	1.653
3053	chr11	117875518	117877622	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	-3044	NM_027919	71776	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	3.325	13.384	2.181	4.767	1.453	0.945	nan	2.333	2.955	3.298	3.648	1.661	2.121	2.039	2.999	3.051	1.744	3.906	1.684	nan	0.462	2.281	0.369	0.057	4.299
9137	chr3	9515126	9516924	+	0	NA	intron (NM_133218, intron 2 of 8)	B4A|SINE|B4	94060	NM_133218	170753	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	4.215	1.226	0.530	1.633	1.201	0.711	3.395	4.196	1.698	1.372	0.600	0.769	2.718	3.869	3.861	3.968	2.583	3.413	2.060	0.625	0.750	0.929	0.940	0.339	4.645
2206	chr11	53918656	53923889	+	0	NA	Intergenic	Intergenic	-29569	NM_011396	20520	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	3.540	0.956	0.351	5.001	3.933	1.439	3.294	6.040	4.193	5.462	2.746	1.747	5.670	8.492	4.749	5.719	3.339	6.466	nan	0.811	0.469	1.542	1.520	0.863	6.701
12778	chr6	134659271	134668269	+	0	NA	intron (NM_026371, intron 2 of 3)	ID_B1|SINE|B4	22830	NM_026371	67774	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	2.756	1.413	0.645	2.679	2.333	0.942	2.110	3.099	4.131	3.828	1.454	0.911	2.844	4.580	nan	3.788	1.946	4.429	nan	1.221	0.662	4.521	1.160	0.648	nan
2177	chr11	52045130	52049409	+	0	NA	intron (NM_001166654, intron 13 of 13)	intron (NM_001166654, intron 13 of 13)	43048	NM_001166653	213084	Mm.280557	NM_153785	ENSMUSG00000020389	Cdkl3	AI852479|B230379H01Rik	cyclin-dependent kinase-like 3	protein-coding	6.081	6.151	2.074	7.442	5.537	3.942	6.305	6.769	5.887	7.852	5.204	2.872	7.506	7.180	5.952	7.377	5.187	7.208	nan	2.426	2.003	nan	nan	2.863	7.329
5550	chr15	86190426	86199165	+	0	NA	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-8654	NM_145475	223753	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	nan	8.704	4.244	nan	0.421	0.226	nan	nan	nan	0.787	0.624	0.438	0.324	0.507	nan	nan	nan	nan	nan	2.742	1.783	6.205	0.756	0.642	nan
7841	chr19	46919459	46922514	+	0	NA	intron (NR_028353, intron 3 of 18)	intron (NR_028353, intron 3 of 18)	41365	NM_029810	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.679	0.707	0.469	nan	0.598	0.457	0.562	0.593	0.529	0.511	0.494	0.341	0.354	0.567	0.783	0.847	0.733	nan	3.314	3.514	2.811	6.037	4.893	4.203	0.863
13007	chr7	25860550	25864081	+	0	NA	Intergenic	Intergenic	-35343	NM_009999	13088	Mm.218749	NM_009999	ENSMUSG00000030483	Cyp2b10	Cyp2b|Cyp2b20|p16	cytochrome P450, family 2, subfamily b, polypeptide 10	protein-coding	9.704	6.885	5.094	7.497	10.920	7.041	10.323	10.601	5.532	8.681	6.386	4.498	6.789	10.751	6.692	7.461	9.891	7.752	5.820	9.733	6.047	5.522	10.274	8.493	9.317
7330	chr18	65225952	65233490	+	0	NA	intron (NR_105742, intron 4 of 6)	(GA)n|Simple_repeat|Simple_repeat	-19140	NR_029600	387231		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	7.999	0.648	0.361	4.410	4.743	2.498	5.609	8.004	5.716	6.744	3.178	1.963	6.932	8.911	4.998	6.149	5.917	8.989	0.612	0.890	0.477	0.604	0.777	0.507	6.589
15685	chrX	12927356	12928950	+	0	NA	Intergenic	L1MB1|LINE|L1	-8720	NM_001272033	245350	Mm.302695	NM_001272033		AA414768	OTTMUSG00000017000	expressed sequence AA414768	protein-coding	2.355	0.369		2.018	0.998	1.000	2.086	3.154	1.624	1.744	1.522	0.315	2.344	3.124	2.669	3.113	1.406	2.708	0.998	0.650	0.566	1.283	0.066	0.122	2.561
8695	chr2	132516832	132518995	+	0	NA	intron (NR_028286, intron 2 of 3)	intron (NR_028286, intron 2 of 3)	27185	NR_028286	70371	Mm.394667	NR_028286	ENSMUSG00000086379	1700026D11Rik	-	RIKEN cDNA 1700026D11 gene	ncRNA	4.332	1.437	0.471	5.210	3.038	1.623	0.886	1.802	2.353	2.417	2.157	1.068	0.587	1.953	1.295	nan	1.308	2.724	nan	1.373	0.779	0.897	0.881	0.369	2.134
785	chr1	159341583	159342696	+	0	NA	intron (NM_011931, intron 18 of 19)	intron (NM_011931, intron 18 of 19)	1781	NR_039543	100628622		NR_039543	ENSMUSG00000105399	Mir1843b	mir-1843b|mmu-mir-1843b	microRNA 1843b	ncRNA	3.971	4.843	1.052	7.964	1.590	1.078	1.147	3.400	3.232	10.896	5.205	2.663	3.506	4.364	4.870	5.626	1.500	5.187	3.958	1.147	2.285	4.307	2.380	3.959	9.866
6621	chr17	43045522	43047616	+	0	NA	intron (NM_178589, intron 3 of 5)	intron (NM_178589, intron 3 of 5)	30014	NM_178589	94185	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	5.314	1.664	0.638	1.565	1.930	0.884	8.881	6.637	2.484	2.214	2.868	3.040	6.498	6.973	7.993	8.034	6.236	4.932	1.249	0.429	0.430	1.250	1.487	0.868	7.531
599	chr1	133031007	133037053	+	0	NA	Intergenic	tRNA-Lys-AAA|tRNA|tRNA	-3443	NM_001302802	17248	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	9.767	4.146	1.796	nan	3.346	2.263	3.690	6.604	5.167	5.625	4.619	3.467	5.050	6.639	6.080	11.961	7.181	7.163	3.368	2.123	1.196	3.458	1.898	1.956	8.043
4574	chr14	31637172	31645615	+	0	NA	promoter-TSS (NM_019975)	promoter-TSS (NM_019975)	336	NM_025295	26363	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	5.706	4.233	1.808	5.174	3.115	2.246	5.653	7.996	4.704	7.558	1.583	1.191	6.427	7.629	6.885	8.862	4.834	nan	1.628	1.078	1.001	nan	1.298	1.000	9.007
587	chr1	132599405	132600985	+	0	NA	exon (NM_001160317, exon 21 of 28)	exon (NM_001160317, exon 21 of 28)	42663	NM_001160316	269116	Mm.326702	NM_182716	ENSMUSG00000026442	Nfasc	AA387016|D430023G06Rik|NF|mKIAA0756	neurofascin	protein-coding	5.346	nan	0.562	3.328	2.528	1.290	4.174	3.107	4.247	3.488	2.696	1.199	6.022	5.603	5.207	9.938	6.630	6.155	nan	0.547	1.008	0.512	0.495	0.242	4.507
15689	chrX	13231170	13233798	+	0	NA	Intergenic	B4A|SINE|B4	3799	NR_045430	72122	Mm.75434	NR_045429	ENSMUSG00000100714	2010308F09Rik	-	RIKEN cDNA 2010308F09 gene	ncRNA	4.545	5.078	3.053	4.033	1.703	0.832	0.864	1.620	2.533	2.453	2.060	1.061	1.302	1.944	2.114	1.833	2.051	2.854	1.336	2.385	0.692	1.153	0.920	0.768	1.619
15237	chr9	66851264	66855189	+	0	NA	intron (NM_173413, intron 4 of 7)	intron (NM_173413, intron 4 of 7)	-18520	NM_026674	68318	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	3.016	1.141	0.460	2.692	1.974	0.797	3.945	5.851	4.378	5.885	3.492	2.385	3.218	5.835	5.416	6.172	2.256	4.969	6.090	1.613	1.280	5.560	4.143	2.842	5.889
1235	chr10	41191484	41198148	+	0	NA	intron (NM_133999, intron 22 of 22)	intron (NM_133999, intron 22 of 22)	108425	NM_133999	103199	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	10.149	11.657	4.530	6.256	3.650	1.922	5.831	6.576	3.800	5.759	3.414	1.244	5.977	7.700	7.504	7.811	4.922	7.245	3.790	2.047	1.820	4.713	2.783	2.653	12.599
10757	chr4	137548846	137551766	+	0	NA	intron (NM_008305, intron 66 of 96)	intron (NM_008305, intron 66 of 96)	12020	NR_105985	102465616		NR_105985	ENSMUSG00000099134	Mir7018	Gm27606|mmu-mir-7018	microRNA 7018	ncRNA	8.076	13.622	4.496	10.514	8.272	6.574	4.186	7.705	6.267	13.046	7.107	4.231	5.704	9.114	6.679	8.550	4.334	7.500	5.226	2.931	3.978	6.442	nan	5.924	13.261
3814	chr13	3887871	3892797	+	0	NA	intron (NM_019671, intron 3 of 11)	intron (NM_019671, intron 3 of 11)	3247	NM_001047159	56349	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	7.329	4.373	3.166	5.002	4.224	2.363	4.040	6.698	5.798	5.836	9.486	3.837	6.188	8.562	6.826	6.627	5.132	7.264	2.225	1.404	1.042	2.319	0.778	0.509	5.401
298	chr1	74130557	74132559	+	0	NA	intron (NM_001034060, intron 7 of 11)	intron (NM_001034060, intron 7 of 11)	6017	NM_001170641	435626	Mm.240447	NM_001034060	ENSMUSG00000061815	Rufy4	F930048N03Rik	RUN and FYVE domain containing 4	protein-coding	5.018	4.915	2.251	3.825	3.411	1.813	3.031	5.558	2.304	2.851	0.791	0.879	2.495	4.911	3.780	7.520	3.397	4.162	nan	nan	1.056	1.774	nan	0.457	5.159
95	chr1	36603365	36605273	+	0	NA	intron (NM_001126046, intron 7 of 14)	ID_B1|SINE|B4	-10987	NM_027957	381337	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	6.475	5.684	1.471	6.120	2.541	1.077	3.524	3.590	3.405	4.450	2.616	2.095	4.366	4.845	5.179	8.722	3.914	5.384	3.757	2.002	1.376	4.969	3.011	1.670	9.416
8742	chr2	145625036	145629025	+	0	NA	intron (NM_053195, intron 15 of 16)	IAPEz-int|LTR|ERVK	-72048	NM_001037929	627302	Mm.445953	NM_001037929		Gm14092	OTTMUSG00000015643	predicted gene 14092	protein-coding	3.586	0.704	1.024	6.473	3.479	2.636	1.382	2.881	1.815	1.634	2.395	0.813	1.518	1.758	1.429	2.651	1.823	2.924	nan	0.887	1.023	0.604	0.891	0.750	2.256
3291	chr12	36609690	36612599	+	0	NA	intron (NM_178629, intron 9 of 9)	intron (NM_178629, intron 9 of 9)	195528	NR_037309	100499526		NR_037309	ENSMUSG00000092917	Mir3472	mmu-mir-3472	microRNA 3472	ncRNA	6.712	nan	0.400	2.424	1.674	0.865	4.065	3.593	3.658	3.953	3.795	3.520	5.976	5.421	4.133	4.225	4.743	4.372	nan	0.987	0.927	0.680	0.876	0.546	6.315
8088	chr2	30325220	30330907	+	0	NA	intron (NM_198304, intron 24 of 43)	intron (NM_198304, intron 24 of 43)	31253	NM_139302	227700	Mm.33343	NM_139302	ENSMUSG00000026860	Sh3glb2	SPAS-1	SH3-domain GRB2-like endophilin B2	protein-coding	8.316	6.591	1.952	9.043	3.373	1.909	8.101	9.199	nan	9.918	8.489	5.371	8.260	7.614	9.181	8.728	9.701	8.418	3.065	2.010	2.587	5.081	1.662	2.640	18.261
13646	chr7	120512099	120513807	+	0	NA	intron (NM_001278943, intron 14 of 26)	L1Md_T|LINE|L1	-84672	NR_024324	78552	Mm.289190	NR_024324	ENSMUSG00000044141	E130201H02Rik	-	Y box protein 1 pseudogene	pseudo	5.639	11.201	2.838	8.315	3.149	2.615	6.573	6.523	4.097	8.708	6.638	3.423	5.962	7.048	8.121	8.308	4.023	6.467	5.376	2.740	3.556	6.354	3.684	4.358	12.799
243	chr1	64081067	64083648	+	0	NA	intron (NM_033563, intron 1 of 3)	intron (NM_033563, intron 1 of 3)	39032	NM_033563	93691	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	6.695	1.274	0.706	6.513	1.777	0.518	2.755	4.825	2.707	2.261	0.826	1.955	5.153	2.578	3.157	7.262	3.315	4.363	2.882	2.571	1.149	2.313	2.145	1.403	4.343
3835	chr13	9026260	9027870	+	0	NA	Intergenic	Intergenic	-31053	NM_027000	69237	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	3.675	2.495	0.838	2.912	2.877	1.559	3.740	6.302	3.955	4.348	2.388	2.784	4.964	4.978	4.942	4.220	2.286	4.594	1.225	0.355	0.152	0.937	0.897	0.416	3.177
4731	chr14	60795640	60797261	+	0	NA	intron (NR_040642, intron 5 of 19)	B3|SINE|B2	11884	NR_040642	70478	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	3.971	nan	0.705	0.709	0.224	0.149	5.624	7.054	2.567	2.703	0.516	2.118	3.633	3.040	4.309	4.803	2.687	2.339	4.602	2.052	2.742	4.724	6.051	5.468	4.037
11536	chr5	106246213	106248981	+	0	NA	Intergenic	Lx9|LINE|L1	-73743	NR_136913	102635633	Mm.383511	NR_136913	ENSMUSG00000105508	Gm32921	-	predicted gene, 32921	ncRNA	2.280	0.950	0.420	2.968	1.287	0.532	nan	2.031	2.734	2.499	1.537	0.908	5.202	5.758	4.649	6.417	2.719	4.019	1.966	1.024	0.531	2.004	0.809	0.278	3.778
8241	chr2	51788671	51790343	+	0	NA	Intergenic	Intergenic	-57498	NR_040639	433426	Mm.244381	NR_040639	ENSMUSG00000085014	Gm13490	OTTMUSG00000012405	predicted gene 13490	ncRNA	5.809	8.546	5.872	3.723	3.344	2.576	2.392	2.652	3.189	nan	2.738	1.433	2.213	2.847	2.739	4.077	3.296	4.187	2.995	3.418	2.902	2.777	3.979	2.971	5.842
2682	chr11	95269918	95271894	+	0	NA	TTS (NM_001195004)	TTS (NM_001195004)	9377	NM_053093	93670	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	3.186	nan	0.976	2.830	2.451	2.734	4.004	2.893	3.868	3.006	1.093	2.261	3.229	4.442	2.863	3.560	3.732	3.606	0.783	nan	1.051	0.554	nan	nan	2.664
6222	chr16	92683540	92700655	+	0	NA	intron (NM_001111023, intron 1 of 5)	intron (NM_001111023, intron 1 of 5)	5232	NM_001111023	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	8.042	nan	0.747	6.607	4.494	2.434	7.917	8.811	6.887	8.542	10.053	6.508	10.108	10.472	8.583	10.335	7.101	nan	1.443	1.220	0.879	nan	0.794	0.645	11.045
6338	chr17	12975064	12976963	+	0	NA	intron (NM_001113532, intron 5 of 5)	intron (NM_001113532, intron 5 of 5)	-15288	NM_009338	110460	Mm.439711	NM_009338	ENSMUSG00000023832	Acat2	AW742799|Tcp-1x|Tcp1-rs1	acetyl-Coenzyme A acetyltransferase 2	protein-coding	4.079	5.661	2.227	3.411	2.192	1.459	2.644	3.690	2.687	2.640	8.306	2.365	1.708	2.128	2.729	4.439	1.873	3.522	1.652	1.200	0.828	1.357	0.952	0.690	3.528
5791	chr16	10841900	10845258	+	0	NA	TTS (NM_001162932)	TTS (NM_001162932)	8520	NM_001162932	223970	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	4.646	10.495	6.788	2.301	2.040	1.867	3.322	2.943	2.663	2.762	1.095	1.587	4.109	3.975	3.174	4.467	4.666	3.627	1.202	1.470	2.185	1.108	1.055	1.241	5.762
14301	chr8	73058326	73074755	+	0	NA	intron (NM_001317391, intron 6 of 15)	(CA)n|Simple_repeat|Simple_repeat	50028	NR_039551	100628574		NR_039551	ENSMUSG00000093140	Mir28b	mmu-mir-28b	microRNA 28b	ncRNA	6.884	nan	1.354	6.030	7.594	5.570	nan	8.780	nan	5.603	3.010	1.904	6.308	8.586	6.086	7.608	6.134	5.541	2.348	1.855	2.084	nan	2.146	2.006	nan
753	chr1	155124604	155125876	+	0	NA	Intergenic	MTC|LTR|ERVL-MaLR	21540	NM_008209	15064	Mm.7580	NM_008209	ENSMUSG00000026471	Mr1	H2ls	major histocompatibility complex, class I-related	protein-coding	4.119	0.505	0.532	1.352	2.913	1.561	3.509	2.522	nan	2.163	1.089	0.331	3.199	4.136	3.894	6.482	4.820	3.480	nan	0.595	0.753	0.733	nan	0.077	4.003
10920	chr4	149967188	149968602	+	0	NA	Intergenic	Intergenic	-12889	NM_029035	74646	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	5.530	3.780	2.776	4.522	3.446	3.967	2.316	4.786	4.074	3.531	2.487	4.135	3.471	4.147	2.894	3.764	4.338	4.459	3.645	2.416	2.167	2.508	2.754	2.340	3.087
11373	chr5	77563297	77569918	+	0	NA	Intergenic	IAPLTR1_Mm|LTR|ERVK	101119	NR_131050	69370	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	4.234	2.348	1.008	3.530	2.514	1.424	4.050	3.163	2.617	3.743	2.792	1.342	4.566	6.213	5.151	4.241	2.949	6.346	0.712	0.676	0.644	0.715	0.394	0.375	4.539
8077	chr2	29916616	29923220	+	0	NA	intron (NM_013615, intron 14 of 16)	(TCCC)n|Simple_repeat|Simple_repeat	-15491	NM_028923	74412	Mm.275121	NM_028923	ENSMUSG00000019715	Gle1	4933405K21Rik|AA553313|Gle1l	GLE1 RNA export mediator (yeast)	protein-coding	8.009	11.545	3.005	7.313	3.175	1.853	8.731	9.899	nan	9.288	5.839	3.039	9.728	9.175	9.480	12.975	8.879	8.604	3.667	1.708	1.891	4.707	2.275	3.315	16.173
14297	chr8	73005477	73009401	+	0	NA	intron (NM_001317391, intron 7 of 15)	intron (NM_001317391, intron 7 of 15)	-9073	NR_039551	100628574		NR_039551	ENSMUSG00000093140	Mir28b	mmu-mir-28b	microRNA 28b	ncRNA	3.160	nan	0.297	2.586	1.250	0.662	3.683	3.873	nan	3.289	0.984	0.407	5.778	5.317	4.715	nan	5.720	3.800	nan	0.763	0.461	0.772	0.502	0.256	7.292
11296	chr5	66402884	66407010	+	0	NA	intron (NM_001201414, intron 5 of 15)	intron (NM_001201414, intron 5 of 15)	-67282	NM_001201416	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	2.765	0.916	1.094	1.247	2.655	1.947	2.910	4.854	1.923	1.585	1.322	1.793	1.771	2.507	2.578	2.517	2.510	2.440	0.681	0.970	0.772	nan	0.601	0.719	1.957
8293	chr2	60799127	60802203	+	0	NA	intron (NM_020296, intron 2 of 13)	intron (NM_020296, intron 2 of 13)	-78062	NM_001159564	16420	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	9.691	2.158	0.722	8.226	4.707	2.886	8.564	9.668	4.714	10.562	7.379	3.499	6.237	7.630	8.155	10.277	8.688	7.427	6.807	4.215	4.583	5.930	6.220	6.504	15.842
2171	chr11	51727801	51733372	+	0	NA	intron (NM_175255, intron 7 of 22)	intron (NM_175255, intron 7 of 22)	26248	NM_001290785	77371	Mm.33878	NM_175255	ENSMUSG00000036391	Sec24a	-	Sec24 related gene family, member A (S. cerevisiae)	protein-coding	11.185	3.424	1.340	10.602	9.484	6.462	6.917	8.143	7.656	9.212	6.819	3.490	6.991	11.759	6.732	nan	5.474	9.481	nan	2.207	2.297	nan	nan	2.229	8.977
106	chr1	37529669	37532018	+	0	NA	intron (NM_001290801, intron 1 of 14)	L1M4b|LINE|L1	5561	NM_001290801	269181	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	6.532	14.309	7.269	3.324	1.957	1.331	2.942	3.482	3.642	3.260	2.410	2.677	6.137	3.869	3.478	nan	5.016	4.271	0.945	2.024	2.125	0.907	0.898	0.506	4.069
8158	chr2	33281418	33289125	+	0	NA	intron (NM_001290570, intron 3 of 16)	intron (NM_001290570, intron 3 of 16)	69310	NM_011923	26360	Mm.208919	NM_011923	ENSMUSG00000004105	Angptl2	AI593246|AW260363|Arp2	angiopoietin-like 2	protein-coding	6.676	3.367	1.718	5.139	2.979	2.599	5.455	8.206	4.259	nan	2.445	1.922	4.664	5.674	5.577	7.436	6.389	5.865	1.911	1.717	2.237	2.196	1.983	2.449	8.492
11464	chr5	96860566	96869392	+	0	NA	Intergenic	Lx5c|LINE|L1	-56293	NR_131152	666266	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	0.595	0.513	0.438	0.363	0.117	0.042	0.464	0.378	0.370	0.339	0.186	0.285	0.437	0.353	0.631	0.646	0.716	0.483	2.482	2.825	1.505	4.299	1.301	0.774	0.308
203	chr1	58168117	58173018	+	0	NA	intron (NM_023617, intron 23 of 34)	intron (NM_023617, intron 23 of 34)	-39830	NM_023631	71872	Mm.244525	NM_023631	ENSMUSG00000038242	Aox4	2310003G12Rik|Aoh2	aldehyde oxidase 4	protein-coding	4.327	0.480	0.311	3.321	3.210	1.608	5.754	5.813	4.553	5.383	2.416	1.352	7.310	6.541	4.493	nan	8.522	4.755	0.603	0.660	0.625	0.472	0.506	0.327	5.249
6114	chr16	49964177	49972328	+	0	NA	Intergenic	Intergenic	-12208	NR_045001	628951	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	3.724	11.773	6.771	3.210	3.434	1.843	2.513	nan	2.086	1.767	2.224	1.530	2.644	1.967	2.948	2.471	1.818	3.501	1.053	1.229	0.623	0.545	0.881	0.422	2.463
10762	chr4	137803612	137813938	+	0	NA	Intergenic	B1_Mur3|SINE|Alu	-12391	NM_007431	11647	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	nan	1.343	0.597	0.890	0.457	0.406	0.682	0.823	nan	0.754	2.326	2.001	0.470	0.713	0.957	0.904	0.435	nan	5.027	2.404	1.800	7.556	nan	1.108	1.105
8942	chr2	163375690	163379958	+	0	NA	intron (NM_021566, intron 1 of 5)	intron (NM_021566, intron 1 of 5)	20149	NM_021566	59091	Mm.34459	NM_021566	ENSMUSG00000017817	Jph2	1110002E14Rik|JP-2|Jp2	junctophilin 2	protein-coding	1.492	0.648	0.442	0.271	0.381	0.158	3.277	4.873	1.309	0.658	0.649	1.035	2.427	nan	2.363	3.716	1.576	nan	nan	0.401	0.300	0.567	0.310	0.487	nan
4373	chr13	105407945	105413201	+	0	NA	Intergenic	Intergenic	-33120	NM_008308	15550	Mm.4716	NM_008308	ENSMUSG00000021721	Htr1a	Gpcr18	5-hydroxytryptamine (serotonin) receptor 1A	protein-coding	4.291	2.390	1.048	3.106	1.195	0.956	4.246	2.107	7.440	8.019	1.135	0.800	5.414	6.003	6.641	8.704	4.967	3.638	0.548	0.488	0.312	nan	0.231	0.199	7.540
13584	chr7	117419870	117423756	+	0	NA	intron (NM_175645, intron 1 of 11)	B4|SINE|B4	40834	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	2.463	2.306	0.944	2.004	1.597	0.796	1.914	4.652	2.888	3.256	5.751	5.940	2.905	2.569	2.778	2.917	1.075	2.519	1.757	0.934	0.922	2.990	0.515	0.600	2.498
8967	chr2	164629434	164631721	+	0	NA	Intergenic	L1VL4|LINE|L1	8225	NM_001012723	277345	Mm.247244	NM_001012723	ENSMUSG00000070530	Wfdc16	BC043944|WAP16	WAP four-disulfide core domain 16	protein-coding	7.813	8.581	3.305	6.551	4.522	2.094	5.266	7.193	4.060	5.265	4.073	2.843	5.368	6.927	6.671	7.658	5.911	nan	nan	3.364	2.617	4.901	3.290	3.872	10.368
1023	chr1	192198897	192213603	+	0	NA	intron (NM_010600, intron 1 of 10)	intron (NM_010600, intron 1 of 10)	15473	NM_010600	16510	Mm.4489	NM_010600	ENSMUSG00000058248	Kcnh1	EAG1|Kv10.1|M-eag	potassium voltage-gated channel, subfamily H (eag-related), member 1	protein-coding	0.285	0.294	0.229	0.202	0.156	0.067	0.283	0.258	0.188	0.201	0.334	0.146	0.138	0.155	0.219	nan	0.332	0.313	2.345	2.745	1.447	8.052	3.791	2.437	0.360
5705	chr15	101775137	101776629	+	0	NA	TTS (NM_213728)	TTS (NM_213728)	10575	NM_213728	105866	Mm.298210	NM_213728	ENSMUSG00000056605	Krt72	AI507495|K6irs2|Krt2-35|Krt72-ps	keratin 72	protein-coding	2.978	0.810	0.434	2.308	1.322	0.914	1.886	1.577	1.564	1.938	0.941	1.076	3.837	4.063	2.414	3.960	3.259	2.367	0.614	0.769	0.814	0.657	0.679	0.150	4.849
4702	chr14	56631424	56633255	+	0	NA	intron (NM_001145978, intron 27 of 34)	Lx8|LINE|L1	-35909	NM_023773	75339	Mm.152466	NM_023773	ENSMUSG00000079184	Mphosph8	1500035L22Rik|4930548G07Rik|AU040635	M-phase phosphoprotein 8	protein-coding	0.896	1.319	0.474	0.682	0.667	0.203	1.570	3.573	1.328	1.702	5.586	1.441	0.677	0.859	1.718	1.703	1.443	1.907	2.253	1.192	0.365	1.273	2.517	0.533	1.007
14429	chr8	88370072	88372509	+	0	NA	Intergenic	Intergenic	-9099	NM_012047	26992	Mm.5400	NM_012047	ENSMUSG00000031660	Brd7	BP75|CELTIX1|Ptpn13ip	bromodomain containing 7	protein-coding	4.068	0.397	0.714	2.266	2.529	1.700	1.140	1.401	2.828	4.472	1.260	0.654	3.557	4.416	1.414	2.386	3.504	3.154	nan	2.155	0.532	1.001	3.072	1.478	2.128
9988	chr4	40646915	40651702	+	0	NA	Intergenic	Intergenic	53608	NM_025545	66408	Mm.430710	NM_025545	ENSMUSG00000028411	Aptx	2410016G21Rik|AA388047|FHA-HIT	aprataxin	protein-coding	9.083	6.251	1.908	7.110	5.344	2.308	7.636	8.434	6.370	7.025	5.396	3.637	8.432	9.845	9.630	11.185	6.158	9.371	3.216	1.566	1.749	3.292	1.943	1.473	10.676
86	chr1	34878968	34881836	+	0	NA	TTS (NM_145516)	TTS (NM_145516)	30443	NM_145516	226971	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	5.999	1.615	0.471	2.589	3.938	2.259	2.966	2.949	3.062	3.863	1.092	1.230	1.601	2.923	2.686	4.427	2.554	3.901	0.900	1.016	0.855	0.702	0.639	0.464	4.784
9860	chr3	145647152	145652962	+	0	NA	promoter-TSS (NM_010516)	promoter-TSS (NM_010516)	-72	NM_010516	16007	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	6.328	1.106	0.607	5.155	2.321	1.638	6.786	6.246	3.318	6.969	1.485	1.536	7.035	8.667	6.365	7.656	7.570	5.936	2.364	1.711	1.366	3.121	1.825	2.030	10.494
1158	chr10	20252774	20255156	+	0	NA	intron (NM_001198635, intron 6 of 17)	MTB|LTR|ERVL-MaLR	43723	NR_105840	102466647		NR_105840	ENSMUSG00000098887	Mir6413	Gm27432|mmu-mir-6413	microRNA 6413	ncRNA	3.229	0.530	0.449	2.922	2.468	0.789	1.740	2.729	3.791	4.507	0.836	0.434	2.730	3.486	4.161	5.107	2.597	4.829	0.692	0.163		0.983	0.121	0.204	nan
8687	chr2	132058182	132061046	+	0	NA	intron (NM_018824, intron 14 of 15)	B3|SINE|B2	-29626	NM_175445	215653	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	5.113	0.532	0.827	1.637	2.746	2.051	3.503	6.687	2.458	2.594	0.615	0.465	4.751	3.533	5.170	7.501	6.996	3.184	nan	0.793	1.271	0.732	0.885	1.412	6.374
2170	chr11	51694094	51698709	+	0	NA	intron (NM_001290785, intron 22 of 22)	intron (NM_001290785, intron 22 of 22)	-7767	NM_025319	66050	Mm.35693	NM_025319	ENSMUSG00000007777	0610009B22Rik	-	RIKEN cDNA 0610009B22 gene	protein-coding	7.018	3.867	1.581	4.499	3.058	2.205	5.457	4.446	4.068	4.039	3.598	2.970	5.648	6.293	4.299	4.235	3.935	5.325	nan	2.005	2.769	nan	nan	1.758	4.448
9182	chr3	27117870	27118976	+	0	NA	intron (NM_007900, intron 20 of 24)	intron (NM_007900, intron 20 of 24)	35431	NM_007900	13605	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536|mKIAA4037	ect2 oncogene	protein-coding	2.837	1.891	1.339	2.792	2.660	2.934	1.624	1.233	2.140	1.812	0.637	0.601	1.577	2.794	nan	2.119	1.914	2.268	0.584	1.494	1.523	0.903	0.793	1.002	2.465
2335	chr11	66828816	66832823	+	0	NA	Intergenic	Intergenic	-81172	NM_178656	193003	Mm.440256	NM_178656	ENSMUSG00000048070	Pirt	A530088H08Rik	phosphoinositide-interacting regulator of transient receptor potential channels	protein-coding	0.603	1.198	1.098	0.699	0.782	0.397	0.793	0.828	1.399	0.738	0.310	2.301	0.448	nan	0.845	0.871	0.718	0.997	3.963	2.871	1.606	2.266	6.695	5.264	nan
11304	chr5	66528162	66533202	+	0	NA	intron (NM_001310626, intron 2 of 15)	intron (NM_001310626, intron 2 of 15)	88135	NM_009686	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	4.307	1.591	0.778	3.367	3.787	1.942	2.967	4.824	3.446	3.587	3.368	2.740	3.085	6.195	4.555	5.373	2.790	4.188	1.069	1.023	0.500	nan	0.511	0.497	3.514
9078	chr2	173982814	173987062	+	0	NA	Intergenic	L1VL4|LINE|L1	-92113	NM_172675	228960	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	1.225	0.436	0.792	0.982	0.977	0.902	2.058	1.290	1.254	1.687	0.668	0.833	1.189	0.868	1.472	nan	1.913	nan	2.658	3.839	3.667	2.655	3.415	3.257	nan
14228	chr8	48791989	48793617	+	0	NA	Intergenic	Intergenic	-118113	NM_011857	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding	2.370	1.138	0.722	1.282	2.399	2.207	2.404	8.722	1.905	1.102	0.729	0.879	4.198	3.271	2.567	6.474	4.230	2.711	0.673	0.582	1.095	0.976	0.321	0.533	1.303
10655	chr4	133396569	133397960	+	0	NA	intron (NM_016981, intron 1 of 11)	intron (NM_016981, intron 1 of 11)	27488	NR_039582	100628620		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	3.017	7.546	5.555	3.525	7.273	5.231	6.326	3.188	nan	2.179	3.430	2.565	2.332	4.241	2.914	2.580	1.974	nan	2.767	2.867	2.906	1.154	4.350	4.067	2.856
12953	chr7	19465838	19467638	+	0	NA	Intergenic	Intergenic	-8244	NM_172279	232944	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	3.114	1.500	0.414	1.868	1.459	1.092	2.590	6.259	3.130	2.534	4.295	1.707	2.011	1.672	4.265	4.543	3.068	4.799	0.364	0.575	1.083	0.921	0.817	1.087	5.222
6516	chr17	30252181	30253827	+	0	NA	intron (NM_172618, intron 9 of 11)	B1_Mus2|SINE|Alu	3531	NR_105839	102465223		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA	0.939	1.218	0.777	1.406	0.877	0.771	1.318	0.952	0.883	0.913	0.376	0.734	0.476	0.740	0.771	1.334	1.288	1.200	2.877	1.890	1.338	2.491	3.931	3.931	1.447
6560	chr17	34289096	34292789	+	0	NA	Intergenic	Intergenic	-3171	NM_010378	14960	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	nan	6.870	2.845	1.298	1.251	0.633	4.549	1.029	0.963	1.432	0.093	0.112	5.851	5.448	1.525	2.068	1.374	4.016	0.588	1.213	0.813	0.198	0.361	0.195	5.452
6304	chr17	5802881	5805588	+	0	NA	TTS (NR_045081)	TTS (NR_045081)	4744	NR_045080	78512	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	1.988	12.109	3.601	2.253	1.053	0.318	0.893	1.330	1.955	1.883	6.145	2.635	1.074	1.254	2.137	2.194	nan	1.661	nan	1.894	1.025	6.053	1.305	0.644	1.729
11600	chr5	115417997	115420065	+	0	NA	Intergenic	Intergenic	-10654	NM_008629	17690	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	2.044	1.081	0.673	0.316	0.457	0.177	9.974	5.639	0.659	0.508	0.204	0.771	4.904	1.994	4.476	3.841	4.886	2.147	nan	nan	0.307	0.294	5.543	4.279	0.648
8296	chr2	62218689	62222404	+	0	NA	intron (NM_001242378, intron 4 of 25)	L1MD1|LINE|L1	174031	NM_033552	94229	Mm.314497	NM_033552	ENSMUSG00000026904	Slc4a10	NCBE|mKIAA4136	solute carrier family 4, sodium bicarbonate cotransporter-like, member 10	protein-coding	4.585	0.618	0.455	2.936	1.334	1.007	5.864	4.864	2.642	3.202	1.027	0.308	5.324	5.591	5.043	6.990	6.635	4.450	2.188	1.287	0.880	1.534	2.203	1.684	5.766
14259	chr8	64743150	64747333	+	0	NA	intron (NM_178633, intron 13 of 14)	intron (NM_178633, intron 13 of 14)	-11663	NM_025436	66234	Mm.30119	NM_025436	ENSMUSG00000031604	Msmo1	1500001G16Rik|C78600|DESP4|ERG25|Sc4mol	methylsterol monoxygenase 1	protein-coding	0.509	6.606	5.150	0.397	0.160	0.119	0.218	0.506	0.310	0.145	0.378	0.246	0.186	0.128	0.215	0.492	0.663	0.477	nan	1.168	0.527	1.020	0.353	0.432	nan
11545	chr5	108995010	108997671	+	0	NA	exon (NM_009491, exon 6 of 6)	exon (NM_009491, exon 6 of 6)	10096	NM_009491	22307	Mm.261598	NM_009491	ENSMUSG00000067010	Vmn2r10	V2r16|VR16	vomeronasal 2, receptor 10	protein-coding	4.561	0.786	0.314	1.813	1.108	0.207	nan	3.880	2.414	3.083	0.959	0.265	3.394	4.910	3.167	5.601	4.027	3.315	nan	0.292	0.092	0.459	0.186	0.143	5.401
1709	chr10	108445362	108449862	+	0	NA	Intergenic	Intergenic	115423	NM_054056	114774	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	nan	0.611	0.311	0.232	0.123	0.138	0.268	0.308	nan	0.330	0.273	0.099	0.068	0.104	0.202	0.394	0.478	0.329	5.604	2.131	1.631	4.520	3.754	2.833	0.394
9433	chr3	87886344	87887961	+	0	NA	Intergenic	Intergenic	-1590	NM_033573	94315	Mm.35089	NM_033573	ENSMUSG00000004895	Prcc	-	papillary renal cell carcinoma (translocation-associated)	protein-coding	2.945	4.396	2.618	3.780	4.470	3.712	3.728	2.384	2.832	3.326	1.711	1.282	4.952	6.101	5.252	4.100	3.324	5.916	nan	1.076	1.039	1.034	0.996	0.568	5.066
4896	chr14	79885554	79890360	+	0	NA	Intergenic	RMER15|LTR|ERVL	-18781	NR_033535	100038734	Mm.387484	NR_033535		Gm10845	ENSMUSG00000075496	predicted gene 10845	ncRNA	5.613	2.115	0.985	6.208	4.337	2.348	4.093	8.684	5.482	5.604	3.721	2.799	5.123	8.466	6.895	7.804	4.294	6.895	2.601	1.517	1.280	2.441	1.586	1.507	7.248
339	chr1	78306890	78309323	+	0	NA	Intergenic	Intergenic	-2240	NM_001004173	433323	Mm.276248	NM_001004173	ENSMUSG00000032908	Sgpp2	SPPase2|Spp2	sphingosine-1-phosphate phosphotase 2	protein-coding	13.813	0.666	0.380	4.190	3.376	2.481	13.716	9.381	5.139	6.335	0.342	0.495	15.427	9.563	8.076	15.017	12.863	8.206	nan	nan	0.743	0.361	nan	2.164	10.897
7949	chr2	6176309	6178623	+	0	NA	Intergenic	MER20B|DNA|hAT-Charlie	-15785	NR_040333	320132	Mm.445891	NR_040333	ENSMUSG00000087125	A230108P19Rik	-	RIKEN cDNA A230108P19 gene	ncRNA	nan	12.168	5.263	6.444	4.799	3.032	4.797	4.508	4.811	4.324	4.953	2.002	5.929	8.391	7.644	8.318	5.905	8.096	3.171	1.567	1.525	2.397	1.940	1.855	7.587
6355	chr17	15509905	15514023	+	0	NA	intron (NM_013684, intron 4 of 7)	intron (NM_013684, intron 4 of 7)	12076	NM_013684	21374	Mm.244820	NM_013684	ENSMUSG00000014767	Tbp	GTF2D1|Gtf2d|SCA17|TFIID	TATA box binding protein	protein-coding	4.178	5.125	1.584	7.491	1.419	0.812	5.077	3.542	2.571	5.367	2.951	1.926	2.356	3.440	4.596	3.293	1.089	5.263	6.957	1.830	2.128	6.000	4.492	4.998	8.465
8124	chr2	32027791	32033588	+	0	NA	intron (NM_172268, intron 26 of 35)	intron (NM_172268, intron 26 of 35)	-20257	NR_106135	102466844		NR_106135	ENSMUSG00000099075	Mir7674	Gm27563|mmu-mir-7674	microRNA 7674	ncRNA	5.896	2.465	1.047	4.480	4.305	3.202	5.366	7.502	3.419	4.252	6.763	4.109	5.918	5.102	4.901	6.980	5.302	5.170	4.107	2.133	2.066	3.191	3.160	2.575	8.786
268	chr1	66962692	66965648	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-19114	NM_021285	17901	Mm.1000	NM_021285	ENSMUSG00000061816	Myl1	AI325107|MLC1f|MLC3f|Mylf	myosin, light polypeptide 1	protein-coding	3.464	0.524	0.262	0.850	0.524	0.495	3.962	2.076	1.513	1.329	0.328	0.422	3.425	2.077	2.500	4.655	2.390	nan	1.190	0.853	0.332	0.557	0.594	0.304	1.473
7281	chr18	60650361	60653850	+	0	NA	Intergenic	Intergenic	-11305	NR_045401	328963	Mm.417203	NR_045401		G630071F17Rik	G630071F17	RIKEN cDNA G630071F17 gene	ncRNA	8.852	nan	0.522	5.258	3.488	2.111	6.558	5.204	5.329	7.192	3.763	2.283	9.705	6.118	6.044	6.370	7.764	5.891	nan	2.106	1.276	nan	2.594	1.833	10.113
8833	chr2	153378150	153381393	+	0	NA	intron (NM_001039939, intron 3 of 11)	B1_Mus1|SINE|Alu	33632	NM_001039939	228790	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	nan	0.477	0.767	0.399	0.495	0.376	0.543	0.488	nan	nan	0.271	0.219	nan	nan	0.211	0.495	0.684	nan	nan	5.820	5.763	3.411	2.462	3.105	nan
3677	chr12	103933179	103934813	+	0	NA	Intergenic	RLTR6-int|LTR|ERV1	22901	NM_009247	20704	Mm.312593	NM_009247	ENSMUSG00000072849	Serpina1e	Dom5|PI5|Spi1-5	serine (or cysteine) peptidase inhibitor, clade A, member 1E	protein-coding	3.541	11.050	3.648	4.392	1.880	0.773	0.899	0.954	1.899	1.981	1.128	0.732	1.262	nan	1.900	1.836	1.385	2.776	7.501	3.849	3.268	6.927	6.002	5.551	3.434
2872	chr11	105344634	105347353	+	0	NA	intron (NM_008626, intron 20 of 29)	PB1D10|SINE|Alu	53347	NM_008626	17534	Mm.235616	NM_008626	ENSMUSG00000020695	Mrc2	Endo180|mKIAA0709|uPARAP	mannose receptor, C type 2	protein-coding	0.911	1.792	1.677	nan	0.839	0.510	0.872	0.685	nan	nan	0.530	0.601	0.513	nan	0.598	0.821	1.251	nan	3.340	5.413	1.747	3.666	2.970	2.275	0.566
11088	chr5	28586240	28589542	+	0	NA	intron (NR_015562, intron 2 of 6)	L1Md_T|LINE|L1	-120790	NM_009170	20423	Mm.57202	NM_009170	ENSMUSG00000002633	Shh	9530036O11Rik|Dsh|Hhg1|Hx|Hxl3|M100081	sonic hedgehog	protein-coding	0.374	0.613	0.501	nan	0.423	0.092	0.392	0.323	0.415	0.380	0.363	0.337	0.101	0.301	0.317	0.510	0.355	0.433	5.999	3.471	3.423	3.331	5.586	4.440	0.463
596	chr1	133003792	133005885	+	0	NA	intron (NM_001302801, intron 5 of 10)	intron (NM_001302801, intron 5 of 10)	20578	NR_126506	17248	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	7.077	2.050	1.009	4.199	5.639	4.387	6.853	6.053	3.988	3.804	2.516	1.863	6.755	8.492	7.217	11.471	6.295	7.705	0.612	0.656	0.740	0.585	0.369	0.220	9.738
8068	chr2	29494532	29509570	+	0	NA	intron (NM_026896, intron 5 of 7)	intron (NM_026896, intron 5 of 7)	-26757	NR_105753	102465170		NR_105753	ENSMUSG00000098539	Mir133c	Gm27865|mmu-mir-133c	microRNA 133c	ncRNA	3.274	10.738	4.818	3.927	2.309	1.393	1.509	1.905	nan	2.246	1.178	0.785	1.816	2.708	2.415	3.705	2.110	3.518	1.667	1.328	1.110	1.848	1.114	0.860	3.880
9033	chr2	167657096	167666019	+	0	NA	promoter-TSS (NM_145538)	promoter-TSS (NM_145538)	-13	NM_145538	407243	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	7.120	1.831	0.950	6.379	4.295	2.788	5.776	7.280	3.338	5.547	5.732	2.443	5.904	6.259	5.694	8.156	6.080	6.891	nan	2.724	2.159	5.291	2.280	1.732	9.665
1297	chr10	56682779	56684861	+	0	NA	Intergenic	(TCTCTG)n|Simple_repeat|Simple_repeat	306520	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	3.739	0.448	0.438	1.744	3.992	1.409	2.041	2.066	3.622	3.189	1.808	1.207	3.880	3.927	2.831	3.478	3.415	4.464	nan	0.628	0.224	0.189	0.350	0.183	2.363
12209	chr6	48688474	48691343	+	0	NA	intron (NM_174990, intron 2 of 2)	intron (NM_174990, intron 2 of 2)	5330	NM_174990	107526	Mm.333048	NM_174990	ENSMUSG00000054435	Gimap4	AU019574|E430007K16Rik|Ian-1|Ian1|Imap4	GTPase, IMAP family member 4	protein-coding	4.765	20.217	10.882	5.197	2.293	1.323	2.038	3.066	3.246	4.001	1.181	1.019	1.332	2.196	2.745	2.959	2.975	3.419	nan	2.879	2.867	0.557	0.831	0.567	2.353
5776	chr16	10327277	10343329	+	0	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	-4018	NR_126064	381033	Mm.263108	NR_126064		Gm1600	Gm1776	predicted gene 1600	ncRNA	nan	0.821	0.487	3.560	3.867	2.474	nan	6.412	4.038	4.368	3.163	1.769	5.863	6.893	6.068	7.926	4.058	8.473	2.025	1.104	0.971	2.240	1.114	1.032	7.173
2090	chr11	35847298	35852685	+	0	NA	intron (NM_170779, intron 19 of 22)	intron (NM_170779, intron 19 of 22)	-15463	NM_025936	104458	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	nan	0.650	0.297	2.915	2.115	0.911	3.281	2.979	1.698	3.451	1.215	0.852	4.144	8.231	3.393	nan	2.226	nan	1.763	1.510	0.820	2.155	1.325	0.888	3.822
3495	chr12	80782253	80787455	+	0	NA	Intergenic	Intergenic	-5678	NM_178682	217684	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	6.537	2.710	1.496	3.378	2.126	1.255	5.705	4.873	6.371	5.939	1.550	1.364	9.194	6.062	6.424	8.575	7.041	6.906	1.180	0.698	0.457	1.114	0.635	0.434	7.628
7574	chr19	10598553	10600709	+	0	NA	intron (NM_145496, intron 2 of 16)	intron (NM_145496, intron 2 of 16)	4627	NM_145496	225913	Mm.374868	NM_145496	ENSMUSG00000034371	Tkfc	BC021917|Dak	triokinase, FMN cyclase	protein-coding	8.243	14.313	5.757	9.736	7.542	6.342	9.258	9.485	nan	11.119	6.440	3.422	5.603	10.419	8.079	8.386	8.085	7.616	2.909	2.335	4.237	5.966	3.772	5.125	14.073
11453	chr5	93467703	93475585	+	0	NA	Intergenic	L1_Mus1|LINE|L1	199819	NM_001164284	381654	Mm.326591	NM_001164284	ENSMUSG00000070686	C87414	-	expressed sequence C87414	protein-coding	3.190	0.593	0.219	2.477	1.201	0.831	4.063	5.986	3.407	5.406	1.740	1.782	4.249	4.742	5.823	4.741	2.507	4.193	3.033	0.922	1.066	3.181	1.426	1.625	6.725
6515	chr17	30206529	30207721	+	0	NA	intron (NM_148926, intron 4 of 4)	intron (NM_148926, intron 4 of 4)	49410	NR_105839	102465223		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA	2.179	0.577	0.815	0.808	1.659	0.612	2.732	1.599	1.503	1.133	0.698	0.511	1.191	2.819	1.892	1.930	2.205	1.444	1.286	1.404	0.264	1.180	2.131	1.136	1.622
6237	chr16	93835943	93838595	+	0	NA	intron (NM_001045529, intron 1 of 16)	intron (NM_001045529, intron 1 of 16)	5148	NM_001045529	338467	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	2.684	1.352	1.177	1.823	3.595	3.388	1.768	2.483	nan	1.675	0.806	0.706	1.731	2.672	1.888	2.583	2.644	2.372	nan	1.395	0.959	0.472	1.159	1.111	1.796
14111	chr8	28250130	28251472	+	0	NA	Intergenic	MTA_Mm-int|LTR|ERVL-MaLR	-165948	NR_033590	666422	Mm.484413	NR_033590	ENSMUSG00000110372	Gm8096	EG666422	3-phosphoglycerate dehydrogenase pseudogene	pseudo	3.346	nan	0.643	2.518	2.725	2.556	1.997	1.472	1.831	2.271	0.907	0.429	3.174	4.012	2.336	3.190	3.082	4.227	0.778	0.462	0.546	nan	0.436	0.529	4.469
12684	chr6	122549530	122553254	+	0	NA	Intergenic	B1F1|SINE|Alu	-2417	NM_009645	11628	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	5.262	13.642	7.576	3.580	2.244	0.706	1.430	2.306	3.689	4.109	9.041	4.548	2.392	nan	2.429	3.304	3.123	3.804	2.010	2.000	1.800	1.154	nan	0.908	2.861
5572	chr15	92826798	92835283	+	0	NA	Intergenic	Intergenic	233931	NM_001164594	239618	Mm.309826	NM_001164593	ENSMUSG00000036218	Pdzrn4	1110017D07Rik|LNX4|SAMCAP3L|mKIAA3027	PDZ domain containing RING finger 4	protein-coding	nan	0.645	0.336	nan	0.292	0.160	nan	nan	nan	0.315	0.856	0.394	0.183	0.320	nan	nan	nan	nan	nan	2.890	2.285	nan	4.054	3.194	nan
11446	chr5	93268614	93273509	+	0	NA	intron (NM_007635, intron 4 of 7)	intron (NM_007635, intron 4 of 7)	3488	NM_007635	12452	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	7.733	0.516	0.478	6.239	6.305	3.648	8.400	5.664	4.838	5.239	2.210	1.165	6.881	8.701	7.078	6.567	5.402	7.104	2.224	3.372	1.926	2.828	3.443	2.649	5.791
7477	chr19	4256648	4258343	+	0	NA	Intergenic	Intergenic	6383	NR_105951	102465595		NR_105951	ENSMUSG00000099290	Mir6985	Gm27719|mmu-mir-6985	microRNA 6985	ncRNA	3.432	4.924	1.437	3.630	1.091	0.853	4.470	4.706	2.928	3.729	2.186	1.416	3.805	5.133	5.897	6.232	4.414	4.462	1.413	1.194	1.491	2.875	1.932	1.135	6.293
9417	chr3	85805356	85808364	+	0	NA	Intergenic	MT2B1|LTR|ERVL	-60651	NM_172682	229488	Mm.119926	NM_172682	ENSMUSG00000051000	Fam160a1	9930021J17Rik	family with sequence similarity 160, member A1	protein-coding	4.971	0.443	0.589	3.582	3.588	1.414	6.044	3.706	4.145	4.603	2.721	0.770	7.833	7.578	5.092	6.196	4.162	6.926	nan	0.471	0.542	0.643	0.532	0.472	6.212
7486	chr19	5071708	5074284	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	4918	NM_054042	70445	Mm.29597	NM_054042	ENSMUSG00000056481	Cd248	2610111G01Rik|AI842296|Cd164l1|Tem1	CD248 antigen, endosialin	protein-coding	4.552	2.147	1.059	4.156	4.018	1.590	4.920	4.441	nan	4.385	1.751	1.665	3.353	6.711	3.653	4.486	3.811	3.337	0.751	0.909	0.653	1.698	1.663	1.834	5.483
494	chr1	107892642	107893907	+	0	NA	Intergenic	Intergenic	-23985	NR_102306	319596	Mm.136054	NR_102306	ENSMUSG00000100457	D830032E09Rik	-	RIKEN cDNA D830032E09 gene	ncRNA	3.806	nan	1.614	1.838	4.021	3.370	2.375	2.680	2.843	1.948	1.744	2.118	2.412	2.892	1.959	3.981	3.883	2.374	1.784	1.866	1.834	0.513	1.598	1.679	1.370
9345	chr3	60302194	60316315	+	0	NA	Intergenic	Intergenic	-163576	NM_001253713	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	7.646	5.783	2.640	6.943	5.432	2.882	7.736	5.978	6.377	7.814	5.059	3.894	7.964	8.836	nan	7.118	6.997	8.788	2.820	2.388	1.528	2.459	1.983	1.811	5.728
3333	chr12	55910044	55911284	+	0	NA	Intergenic	Intergenic	74298	NM_001037756	52592	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	5.370	nan	1.236	1.570	1.897	1.195	4.908	2.761	2.441	2.442	2.788	5.649	3.711	4.363	2.310	2.730	3.233	2.068	1.708	1.481	2.569	1.210	1.593	2.010	2.972
1956	chr11	6594564	6598866	+	0	NA	TTS (NM_001190344)	TTS (NM_001190344)	9339	NM_001081652	192950	Mm.337771	NM_001081652	ENSMUSG00000041073	Nacad	D230024G13Rik|mKIAA0363	NAC alpha domain containing	protein-coding	nan	2.072	1.292	1.313	1.510	1.146	0.630	0.798	1.509	1.873	7.496	5.239	0.639	1.164	0.774	1.327	1.043	1.108	0.707	nan	0.596	0.713	0.531	0.542	0.963
10332	chr4	102935869	102939561	+	0	NA	intron (NM_001285852, intron 19 of 25)	RMER3D-int|LTR|ERVK	-48664	NM_001163767	67344	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	3.371	nan	0.537	1.367	2.647	1.150	5.755	4.379	nan	4.016	3.224	5.767	4.582	5.172	nan	3.579	1.815	2.017	0.733	0.606	0.364	nan	0.522	0.440	2.196
10024	chr4	43986877	43988052	+	0	NA	Intergenic	B1_Mur1|SINE|Alu	3960	NM_001002787	442829	Mm.348215	NM_001002787	ENSMUSG00000070999	Ccin	4933417A14Rik	calicin	protein-coding	4.020	4.662	2.670	5.160	2.856	3.085	1.533	2.920	3.462	2.586	2.819	3.527	1.383	3.158	1.984	3.517	3.192	4.379	2.069	2.084	3.363	1.960	0.831	1.418	3.550
2778	chr11	100443681	100445758	+	0	NA	intron (NM_025727, intron 1 of 4)	B3|SINE|B2	2795	NM_025727	66720	Mm.34168	NM_025727	ENSMUSG00000001558	Klhl10	4921517C11Rik	kelch-like 10	protein-coding	1.528	14.932	6.588	1.789	1.258	0.835	0.569	0.921	1.066	1.479	1.868	1.166	0.666	0.656	0.986	1.297	nan	1.045	4.162	4.155	3.834	3.611	nan	nan	1.304
2235	chr11	55281133	55284896	+	0	NA	exon (NM_001029988, exon 9 of 23)	exon (NM_001029988, exon 9 of 23)	29243	NM_001029988	245827	Mm.339363	NM_001029988	ENSMUSG00000055333	Fat2	EMI2|Fath2|Gm523|mKIAA0811	FAT atypical cadherin 2	protein-coding	8.332	9.191	3.272	7.843	4.309	2.379	6.430	7.108	5.332	7.596	5.914	4.029	6.840	nan	8.503	8.973	5.440	7.409	nan	2.265	2.613	5.711	2.321	3.083	9.879
238	chr1	63157822	63164275	+	0	NA	intron (NM_001160038, intron 9 of 19)	intron (NM_001160038, intron 9 of 19)	15774	NM_145518	227197	Mm.290791	NM_145518	ENSMUSG00000025968	Ndufs1	5830412M15Rik|9930026A05Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 1	protein-coding	10.115	9.410	5.142	7.750	6.753	5.547	8.519	7.833	5.862	10.478	7.302	4.763	7.861	7.904	6.915	9.656	8.612	nan	5.718	4.381	4.705	5.657	6.531	8.457	9.343
873	chr1	173050408	173051908	+	0	NA	Intergenic	Intergenic	80057	NM_146764	258759	Mm.389211	NM_146764	ENSMUSG00000062527	Olfr1408	MOR267-4	olfactory receptor 1408	protein-coding	1.491	0.688	0.288	1.711	2.014	1.242	1.480	0.974	1.596	2.283	0.530	0.683	2.197	4.069	1.515	3.903	1.431	1.684	0.706	0.584	0.446	0.528	0.886	0.191	2.124
8613	chr2	122590428	122591677	+	0	NA	Intergenic	Intergenic	20225	NM_025961	67092	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	10.372	2.530	0.838	5.920	3.630	1.655	7.508	11.190	3.117	5.998	4.002	2.448	5.295	9.090	5.427	8.363	7.092	10.530	2.557	1.849	1.177	1.733	2.239	2.556	15.159
12979	chr7	20189173	20190508	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-3870	NM_001167538	100312475	Mm.480294	NM_001167538	ENSMUSG00000094735	Vmn1r95	Gm17331	vomeronasal 1 receptor, 95	protein-coding	7.640	10.142	5.579	8.148	4.764	3.213	7.451	7.901	4.765	8.326	6.243	4.521	5.037	6.893	6.491	7.160	6.537	5.908	4.323	4.400	4.437	3.618	4.521	4.441	9.615
9554	chr3	96023067	96026401	+	0	NA	intron (NM_013841, intron 13 of 14)	intron (NM_013841, intron 13 of 14)	-28895	NM_023320	67220	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	9.770	15.740	5.224	11.471	4.042	2.556	11.203	8.714	7.508	8.491	6.364	4.423	11.123	12.131	12.474	12.175	8.272	12.021	7.134	3.424	2.446	7.794	4.158	3.527	15.490
448	chr1	92956298	92964375	+	0	NA	Intergenic	Intergenic	-9746	NR_015525	100037260	Mm.442236	NR_015525	ENSMUSG00000100632	9430060I03Rik	-	RIKEN cDNA 9430060I03 gene	ncRNA	4.279	7.846	2.192	4.710	1.678	0.658	2.276	2.017	2.769	3.335	2.489	1.263	2.691	3.372	3.720	5.730	1.952	3.963	1.870	1.014	0.597	nan	0.433	0.389	5.036
12151	chr6	34675555	34681318	+	0	NA	intron (NM_001347100, intron 2 of 13)	B3A|SINE|B2	-31008	NM_145575	109624	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	4.686	0.573	0.362	1.794	2.620	1.229	6.832	7.696	2.641	2.717	0.928	0.578	5.747	6.287	6.740	7.453	6.561	nan	nan	2.113	1.245	3.637	nan	1.318	nan
13065	chr7	29558524	29559507	+	0	NA	Intergenic	Intergenic	-53555	NM_001081028	74206	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	4.563	0.909	0.711	1.773	2.467	1.251	4.420	3.658	1.774	2.094	0.480	0.670	2.690	3.975	3.774	3.052	2.330	2.421	2.201	1.209	2.134	0.722	1.446	1.423	7.557
9987	chr4	40214190	40218175	+	0	NA	intron (NM_172689, intron 12 of 17)	intron (NM_172689, intron 12 of 17)	23643	NM_172689	230073	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	8.743	9.399	3.737	9.740	5.180	3.586	6.879	8.337	5.980	8.782	5.947	3.386	8.114	10.985	9.334	11.502	6.313	8.865	6.194	2.533	2.177	5.266	3.315	3.227	13.194
2631	chr11	90408022	90413020	+	0	NA	Intergenic	ORR1A1|LTR|ERVL-MaLR	-19604	NM_172563	217082	Mm.158903	NM_172563	ENSMUSG00000003949	Hlf	E230015K02Rik	hepatic leukemia factor	protein-coding	nan	0.635	0.504	nan	0.439	0.245	0.522	0.508	0.675	0.653	0.466	0.252	0.244	0.324	0.476	0.656	0.848	0.523	3.504	3.683	2.615	5.820	3.769	2.620	nan
15796	chrX	103239784	103243538	+	0	NA	intron (NM_029170, intron 2 of 3)	Lx7|LINE|L1	14945	NM_029170	75106	Mm.1441	NM_029170		4930519F16Rik	Ppnx	RIKEN cDNA 4930519F16 gene	protein-coding	3.922	0.908	0.792	3.155	4.376	2.639	2.016	2.971	2.540	2.412	1.313	1.207	1.751	3.389	1.818	2.288	nan	2.551	1.644	2.005	1.234	0.849	2.617	1.581	1.507
10294	chr4	97652635	97654187	+	0	NA	intron (NM_001122952, intron 1 of 10)	intron (NM_001122952, intron 1 of 10)	-68820	NR_015513	319865	Mm.373807	NM_177023		E130114P18Rik	-	RIKEN cDNA E130114P18 gene	ncRNA	3.465	nan	0.591	3.273	2.281	0.722	3.874	4.124	3.823	3.610	2.478	2.172	3.218	4.516	3.321	3.445	1.937	4.115	1.089	0.717	0.326	nan	0.394	0.235	3.465
7571	chr19	10437672	10441904	+	0	NA	intron (NM_173067, intron 6 of 9)	MIR|SINE|MIR	17659	NM_001111140	278795	Mm.490638	NM_001111140	ENSMUSG00000090291	Lrrc10b	Gm705|SerdinR	leucine rich repeat containing 10B	protein-coding	0.738	0.492	0.462	0.588	0.202	0.200	0.878	1.802	nan	0.849	0.301	0.261	0.628	1.081	1.203	nan	1.403	1.430	3.889	2.815	2.466	7.652	6.697	4.481	2.028
9869	chr3	146527615	146529761	+	0	NA	Intergenic	Intergenic	-7265	NM_027371	70285	Mm.28128	NM_027332	ENSMUSG00000028187	Rpf1	2210420E24Rik|2310066N05Rik|Bxdc5	ribosome production factor 1 homolog	protein-coding	4.309	0.455	0.223	3.729	5.929	3.462	5.621	2.168	2.996	3.563	0.843	0.680	3.570	7.467	4.660	3.036	2.508	6.537	0.941	0.954	0.831	0.797	0.902	0.533	4.888
12134	chr6	31549467	31552564	+	0	NA	intron (NM_013723, intron 1 of 7)	intron (NM_013723, intron 1 of 7)	12922	NM_013723	27205	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1	podocalyxin-like	protein-coding	2.748	0.893	0.309	0.665	0.323	0.198	1.956	1.678	2.233	2.265	0.450	0.588	3.146	3.035	3.743	6.175	3.787	nan	nan	0.527	0.198	1.147	0.638	0.439	4.468
13775	chr7	134727797	134733110	+	0	NA	intron (NM_001033420, intron 3 of 51)	intron (NM_001033420, intron 3 of 51)	59766	NM_001033420	330662	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik	dedicator of cytokinesis 1	protein-coding	5.126	nan	1.149	5.289	2.378	0.948	4.636	6.785	nan	5.405	2.430	1.519	7.051	6.062	7.472	7.231	5.663	5.873	4.465	1.688	1.837	4.511	2.648	2.522	10.325
15510	chr9	108923868	108926393	+	0	NA	Intergenic	Intergenic	10511	NM_027066	69384	Mm.158271	NM_027066	ENSMUSG00000025652	Tmem89	1700024B07Rik	transmembrane protein 89	protein-coding	5.442	1.609	1.423	2.739	2.071	1.088	1.628	1.964	nan	nan	2.918	0.810	1.117	2.952	1.967	2.251	1.478	2.140	0.703	2.110	1.345	0.722	0.684	0.860	nan
9804	chr3	131226813	131229364	+	0	NA	Intergenic	Intergenic	44013	NM_008212	15107	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	6.819	4.701	1.384	5.687	2.995	1.923	6.475	nan	3.680	7.440	6.269	3.210	6.967	8.088	6.527	7.326	nan	nan	5.924	3.409	2.582	6.765	4.480	3.873	8.731
12958	chr7	19586747	19590176	+	0	NA	intron (NM_016680, intron 10 of 20)	intron (NM_016680, intron 10 of 20)	11174	NM_022409	63872	Mm.23310	NM_022409	ENSMUSG00000011267	Zfp296	2210018A16Rik|Znf296	zinc finger protein 296	protein-coding	6.641	12.446	3.998	7.687	4.147	2.052	7.307	9.448	4.590	8.799	4.644	2.825	6.541	7.192	7.719	9.335	6.927	7.120	4.149	2.225	3.100	5.725	3.641	3.817	9.986
10948	chr4	151167963	151170747	+	0	NA	intron (NM_001081557, intron 6 of 23)	intron (NM_001081557, intron 6 of 23)	79785	NM_001308446	105704528	Mm.415128	NM_001308446	ENSMUSG00000078491	Gm13090	OTTMUSG00000010356	predicted gene 13090	protein-coding	1.661	nan	0.616	1.214	0.695	0.225	2.613	1.559	2.109	2.106	0.794	0.501	2.541	3.225	2.640	3.631	1.816	3.472	1.403	0.542	0.107	0.896	0.408	0.261	1.373
10436	chr4	118211761	118214003	+	0	NA	intron (NM_011213, intron 24 of 32)	intron (NM_011213, intron 24 of 32)	-2318	NR_106085	102466820		NR_106085	ENSMUSG00000098596	Mir7226	Gm27630|mmu-mir-7226	microRNA 7226	ncRNA	3.611	0.288	0.072	2.253	1.915	0.882	3.214	4.949	1.956	2.481	4.880	2.193	5.059	5.186	3.400	3.817	1.324	3.401	0.790	0.978	0.344	0.503	0.662	0.242	4.417
3297	chr12	37233293	37237631	+	0	NA	Intergenic	Intergenic	-6177	NM_178767	319660	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	2.110	nan	0.478	0.363	0.188	0.129	1.342	1.318	nan	0.519	7.126	1.016	1.118	1.266	1.013	1.103	1.124	1.184	nan	0.529	0.193	0.414	0.547	0.220	0.650
4647	chr14	47989394	47996482	+	0	NA	Intergenic	Intergenic	94074	NR_045959	73961	Mm.390702	NR_045959		4930447J18Rik	4930425M13Rik	RIKEN cDNA 4930447J18 gene	ncRNA	4.406	1.168	0.680	3.334	6.337	3.448	3.509	7.588	3.252	3.843	5.066	3.567	3.315	6.207	4.806	5.979	2.478	4.739	0.948	0.971	0.823	0.982	0.513	0.401	4.629
9428	chr3	87419919	87423908	+	0	NA	Intergenic	Intergenic	-13869	NM_183222	329693	Mm.331122	NM_183222	ENSMUSG00000048031	Fcrl5	Fcrh3|mBXMH2	Fc receptor-like 5	protein-coding	7.073	3.714	1.566	5.888	5.671	3.296	6.961	5.343	5.023	8.513	3.807	3.774	6.654	9.267	5.532	nan	5.724	7.106	nan	4.325	2.935	3.939	5.002	3.345	7.426
14762	chr8	126635685	126637723	+	0	NA	Intergenic	Intergenic	-43268	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	6.142	nan	0.636	nan	2.408	1.323	7.686	6.725	2.084	2.013	6.051	3.080	5.784	6.961	nan	4.959	5.723	nan	1.844	1.234	0.640	nan	3.471	nan	5.723
8757	chr2	146307476	146321915	+	0	NA	intron (NM_001033348, intron 38 of 40)	intron (NM_001033348, intron 38 of 40)	55409	NR_040619	77806	Mm.392819	NR_040619	ENSMUSG00000085958	A930019D19Rik	-	RIKEN cDNA A930019D19 gene	ncRNA	6.134	0.677	0.608	4.156	6.797	3.795	3.568	6.385	4.697	6.571	2.111	1.249	6.941	8.848	4.116	5.839	5.765	5.983	nan	1.094	0.589	1.174	1.458	0.821	4.184
14707	chr8	124113845	124116875	+	0	NA	Intergenic	Intergenic	91887	NM_001029876	382038	Mm.334891	NM_001029876	ENSMUSG00000031976	Urb2	C77575|mKIAA0133	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	protein-coding	7.716	5.527	1.242	8.157	4.294	2.721	4.768	9.883	4.385	8.086	4.009	2.011	6.335	7.966	6.302	10.844	5.897	8.011	nan	1.975	1.764	4.409	1.461	nan	12.156
12045	chr6	8699596	8706381	+	0	NA	intron (NM_001252266, intron 5 of 11)	IAPLTR1_Mm|LTR|ERVK	55470	NM_001252266	15893	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	5.036	0.519	0.401	2.786	2.274	1.149	6.221	7.345	4.516	4.101	0.889	2.587	8.615	7.185	7.008	8.966	7.989	6.659	2.258	0.799	0.609	1.139	1.598	1.279	nan
713	chr1	140103914	140108830	+	0	NA	intron (NM_009888, intron 14 of 21)	intron (NM_009888, intron 14 of 21)	77039	NM_009888	12628	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	8.925	1.151	0.684	nan	2.212	1.591	1.747	2.817	5.011	5.024	0.937	0.743	7.410	5.792	3.629	7.964	8.392	5.277	0.574	0.913	0.474	0.463	0.392	0.319	3.799
9974	chr4	34560764	34563609	+	0	NA	intron (NM_001007589, intron 1 of 4)	intron (NM_001007589, intron 1 of 4)	11571	NM_001007589	433693	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	8.006	7.039	3.321	7.243	2.950	1.398	6.996	6.757	4.519	5.908	4.616	3.549	7.075	6.891	8.178	9.024	4.793	8.444	7.064	3.330	1.828	6.463	4.343	2.039	11.632
13022	chr7	26204528	26208286	+	0	NA	intron (NM_010000, intron 8 of 8)	L1Md_F2|LINE|L1	32998	NM_010000	13094	Mm.14413	NM_010000	ENSMUSG00000040660	Cyp2b9	Cyp2b	cytochrome P450, family 2, subfamily b, polypeptide 9	protein-coding	1.400	0.867	0.609	1.940	0.723	0.231	1.829	2.159	1.722	1.853	0.378	0.994	2.013	2.331	3.106	3.155	1.853	2.873	2.838	0.879	0.985	4.211	1.832	1.337	2.621
12878	chr6	147756754	147762008	+	0	NA	Intergenic	Intergenic	69140	NR_033636	100039727	Mm.396220	NR_033636	ENSMUSG00000085077	1700049E15Rik	Gm15761|OTTMUSG00000026044	RIKEN cDNA 1700049E15 gene	ncRNA	nan	0.739	0.535	nan	1.561	1.062	6.161	5.655	2.514	2.625	1.681	1.497	3.038	3.534	5.673	5.846	4.115	2.449	0.852	nan	0.700	nan	0.533	0.443	1.706
9680	chr3	107354257	107359013	+	0	NA	Intergenic	MamTip2|DNA|hAT-Tip100	-23346	NM_001045807	229700	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	0.459	0.600	0.171	0.384	0.138	0.007	0.403	0.308	0.335	0.257	0.263	0.041	0.191	0.292	nan	0.488	0.185	0.546	2.299	1.511	0.787	5.649	1.663	0.882	0.490
7746	chr19	37613086	37614966	+	0	NA	intron (NM_175353, intron 18 of 21)	intron (NM_175353, intron 18 of 21)	63608	NM_175353	107371	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	2.534	0.968	0.702	1.694	1.821	0.677	3.184	nan	1.790	1.893	0.744	0.668	2.193	3.810	3.194	3.417	2.650	3.080	0.553	0.740	0.450	0.411	0.554	0.241	3.183
11658	chr5	122031718	122039148	+	0	NA	intron (NM_001312908, intron 2 of 22)	intron (NM_001312908, intron 2 of 22)	12392	NM_007804	13048	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2|ENSMUSG00000072641	cut-like homeobox 2	protein-coding	6.053	3.023	1.781	6.444	4.247	3.547	6.219	6.254	4.548	4.748	3.633	2.912	5.495	6.960	4.321	5.662	4.666	4.951	nan	nan	2.086	1.616	nan	1.435	6.165
3557	chr12	85568450	85571371	+	0	NA	Intergenic	Intergenic	-29195	NM_001205052	81703	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.777	0.713	0.485	0.711	0.903	0.725	0.716	0.675	0.646	0.478	1.212	1.466	0.394	0.540	0.552	nan	1.090	0.782	5.090	2.879	4.566	5.186	3.790	4.175	nan
12467	chr6	91668754	91670926	+	0	NA	Intergenic	Intergenic	-14227	NM_009320	21366	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	2.583	1.437	0.477	3.355	0.962	0.442	1.845	3.076	1.418	1.597	1.143	0.731	1.937	1.160	2.373	3.827	1.818	3.063	nan	1.469	2.122	4.925	1.698	1.034	3.737
2839	chr11	102911141	102915606	+	0	NA	intron (NM_197959, intron 9 of 15)	intron (NM_197959, intron 9 of 15)	11751	NM_197959	70218	Mm.32084	NM_197959	ENSMUSG00000051378	Kif18b	3000004C01Rik	kinesin family member 18B	protein-coding	6.686	nan	1.282	5.593	6.497	5.153	4.978	5.586	5.363	6.115	4.408	2.078	5.271	7.853	5.017	7.092	nan	5.856	1.016	nan	1.142	1.501	nan	nan	6.925
10794	chr4	139089588	139092766	+	0	NA	intron (NM_008675, intron 1 of 3)	intron (NM_008675, intron 1 of 3)	1793	NM_008675	17965	Mm.9404	NM_008675	ENSMUSG00000041120	Nbl1	D4H1S1733E|DAN|Dana|NO3	neuroblastoma, suppression of tumorigenicity 1	protein-coding	nan	0.581	0.297	3.424	3.827	2.440	3.715	3.558	nan	3.063	8.529	2.973	2.485	5.305	2.938	2.018	1.111	nan	0.757	0.605	0.499	0.681	nan	0.443	3.806
1679	chr10	98576687	98579106	+	0	NA	Intergenic	Lx|LINE|L1	-226029	NR_045179	667438	Mm.414522	NR_045179		Gm8633	EG667438	predicted gene 8633	ncRNA	2.230	1.161	0.694	1.124	1.123	0.440	1.230	5.170	3.142	2.202	nan	5.396	2.079	1.888	2.949	2.519	3.817	2.000	nan	1.812	1.614	nan	5.904	3.398	1.674
14670	chr8	122237622	122244647	+	0	NA	Intergenic	Intergenic	-41007	NM_009569	22761	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	3.086	0.765	0.525	4.956	2.128	1.455	1.714	5.880	2.528	2.624	1.882	2.770	2.044	2.943	2.689	3.225	1.892	3.397	1.705	2.577	1.841	4.661	1.621	1.462	2.812
15627	chr9	122258470	122267622	+	0	NA	intron (NM_133979, intron 5 of 12)	intron (NM_133979, intron 5 of 12)	10982	NR_106185	102465896		NR_106185	ENSMUSG00000098922	Mir8106	Gm27594|mmu-mir-8106	microRNA 8106	ncRNA	6.601	1.810	0.707	5.274	2.639	1.690	4.780	6.903	4.995	5.677	3.935	2.390	5.665	6.978	7.450	8.724	5.598	7.727	1.903	1.169	1.033	2.193	nan	1.293	7.696
14884	chr9	20819184	20838220	+	0	NA	Intergenic	B4A|SINE|B4	10198	NM_001030290	235033	Mm.297661	NM_001030290	ENSMUSG00000053773	Rdh8	Gm182|prRDH	retinol dehydrogenase 8	protein-coding	7.371	4.753	1.830	6.632	4.840	4.057	6.490	5.214	6.046	7.277	3.331	2.671	6.637	7.592	6.485	7.833	4.833	7.755	1.704	1.237	1.675	1.566	1.666	1.645	12.173
14677	chr8	122423370	122425292	+	0	NA	TTS (NM_007806)	TTS (NM_007806)	2246	NM_145834	234836	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	0.822	0.672	0.312	0.326	0.983	0.624	1.016	1.089	1.166	0.473	5.204	2.622	0.406	0.945	0.770	nan	1.468	0.601	0.621	1.107	1.245	0.716	0.895	0.884	0.497
12274	chr6	57772906	57775029	+	0	NA	intron (NM_146168, intron 3 of 4)	intron (NM_146168, intron 3 of 4)	51158	NM_146168	232023	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	5.868	10.704	6.075	5.992	3.169	1.548	4.457	4.827	3.026	5.547	5.228	4.233	1.388	3.426	5.007	nan	2.547	4.159	nan	3.499	2.562	4.009	3.685	3.526	4.522
10817	chr4	140999733	141001093	+	0	NA	exon (NM_029097, exon 13 of 29)	exon (NM_029097, exon 13 of 29)	-10011	NM_001161799	17150	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	nan	6.955	1.885	6.121	2.465	2.332	5.121	3.822	nan	9.269	4.394	2.660	3.251	6.210	5.360	5.612	2.307	6.873	3.249	1.599	1.985	3.961	nan	4.122	7.991
4215	chr13	63217995	63222255	+	0	NA	intron (NM_001289926, intron 11 of 15)	IAPEz-int|LTR|ERVK	-19904	NR_110520	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	1.311	0.628	0.552	1.820	1.031	0.346	0.693	0.867	1.755	0.988	3.304	1.264	0.515	1.217	1.091	nan	0.882	1.724	3.243	2.474	0.945	4.670	3.308	1.851	0.893
6845	chr17	72997028	72999764	+	0	NA	Intergenic	Intergenic	80091	NM_029999	77889	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	4.458	0.724	0.620	0.965	0.823	0.226	9.093	5.283	nan	2.959	2.356	1.519	6.647	2.797	5.384	8.507	6.171	3.099	0.512	0.761	0.425	0.541	0.552	0.275	5.229
1262	chr10	43387277	43390879	+	0	NA	intron (NM_027772, intron 4 of 7)	L1_Mus3|LINE|L1	-90062	NM_199028	331623	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	1.675	nan	1.234	1.637	0.524	0.174	0.585	0.798	0.971	0.971	0.986	0.836	0.489	0.455	0.895	0.901	0.760	1.348	nan	2.742	1.145	4.204	0.770	0.467	1.253
8952	chr2	163844519	163847753	+	0	NA	Intergenic	MERVL-int|LTR|ERVL	-7614	NM_001030292	241769	Mm.295337	NM_001030292	ENSMUSG00000035238	Kcnk15	KCNK11|KCNK14|KT3.3|TASK5	potassium channel, subfamily K, member 15	protein-coding	4.139	0.622	0.495	1.096	1.003	1.068	1.691	2.376	1.560	1.514	0.947	0.482	1.943	nan	1.978	3.534	4.359	2.060	nan	0.569	0.477	0.523	0.505	0.397	7.538
1290	chr10	53184200	53189340	+	0	NA	Intergenic	Intergenic	-93500	NR_038015	100502820	Mm.55827	NR_038015		Gm19395	-	predicted gene, 19395	ncRNA	2.477	1.359	0.659	5.453	1.000	0.692	0.776	0.936	1.674	1.086	0.696	0.731	0.694	1.172	1.036	1.913	0.953	2.881	nan	0.994	0.584	1.338	0.570	0.250	nan
7024	chr18	11790663	11793202	+	0	NA	Intergenic	RLTR23|LTR|ERV1	-47342	NM_022021	63955	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	4.282	0.793	0.781	2.717	0.932	0.275	2.994	3.047	3.414	2.879	3.412	1.722	nan	4.159	4.613	4.802	3.789	5.327	5.972	2.564	0.925	5.920	1.712	0.930	3.584
1527	chr10	80895296	80898759	+	0	NA	intron (NM_001081688, intron 14 of 17)	intron (NM_001081688, intron 14 of 17)	3942	NM_013895	30055	Mm.142132	NM_013895	ENSMUSG00000020219	Timm13	D10Ertd378e|Tim9|Timm9	translocase of inner mitochondrial membrane 13	protein-coding	2.695	7.213	1.549	5.835	1.155	0.597	1.196	3.640	2.373	2.715	1.941	1.200	1.708	2.535	nan	4.075	1.796	4.014	nan	1.862	2.324	8.586	1.478	1.325	5.297
12121	chr6	31094755	31101061	+	0	NA	intron (NR_110471, intron 3 of 3)	intron (NR_110471, intron 3 of 3)	-34815	NR_029532	387223		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	7.152	2.243	1.327	6.770	7.172	4.280	7.049	7.034	7.444	9.105	2.285	2.790	7.340	9.531	8.224	10.682	7.169	9.380	nan	4.087	2.828	6.759	3.061	2.075	5.042
2162	chr11	51427360	51429813	+	0	NA	intron (NM_153393, intron 2 of 28)	intron (NM_153393, intron 2 of 28)	138666	NM_153393	237759	Mm.154093	NM_153393	ENSMUSG00000063564	Col23a1	2810458L13Rik|AI429655	collagen, type XXIII, alpha 1	protein-coding	6.600	5.262	2.564	6.259	5.904	4.114	7.451	7.299	6.186	5.733	7.969	4.770	6.447	8.305	6.800	8.182	5.411	7.408	3.952	1.574	2.005	nan	2.619	2.802	7.459
12042	chr6	8415831	8425168	+	0	NA	intron (NM_001302353, intron 4 of 4)	intron (NM_001302353, intron 4 of 4)	88662	NR_040452	320312	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	4.392	1.707	1.079	2.563	2.154	0.843	5.609	5.972	3.457	3.114	0.497	0.663	5.439	6.715	5.443	7.849	8.157	4.629	0.793	0.984	0.525	0.548	0.892	0.362	3.684
10179	chr4	63376644	63380508	+	0	NA	exon (NM_001045514, exon 13 of 22)	exon (NM_001045514, exon 13 of 22)	16127	NM_011016	18406	Mm.14173	NM_011016	ENSMUSG00000061540	Orm2	Agp1|Orm-2	orosomucoid 2	protein-coding	3.362	0.779	0.288	2.043	1.760	0.642	1.822	1.854	2.990	3.621	1.740	0.593	3.832	5.567	3.187	nan	2.131	3.591	1.167	0.533	0.349	nan	nan	0.655	nan
1132	chr10	19342093	19350072	+	0	NA	Intergenic	Intergenic	-10457	NM_053008	94222	Mm.156946	NM_053008	ENSMUSG00000045591	Olig3	Bhlhb7|bHLHe20|oligo3	oligodendrocyte transcription factor 3	protein-coding	2.773	1.211	0.775	2.805	1.935	0.927	0.815	3.495	nan	3.038	0.899	0.724	2.727	4.865	1.544	1.793	2.054	3.078	0.903	0.843	0.384	1.220	1.469	0.771	nan
4308	chr13	98009279	98013257	+	0	NA	intron (NM_012026, intron 9 of 35)	MLT1A1|LTR|ERVL-MaLR	194897	NM_012026	110596	Mm.252718	NM_012026	ENSMUSG00000021662	Arhgef28	9230110L08Rik|AI323540|D13Bwg1089e|RIP2|Rgnef|RhoGEF|Rhoip2|p190RhoGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding	6.849	6.223	1.787	8.710	2.599	2.030	8.108	6.242	4.371	7.532	7.826	3.587	5.477	6.655	9.381	7.685	nan	nan	4.176	2.264	1.992	4.265	2.317	1.930	12.314
7890	chr19	55814903	55819675	+	0	NA	intron (NM_001331150, intron 4 of 14)	intron (NM_001331150, intron 4 of 14)	75479	NM_001142923	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	10.795	5.669	2.504	9.154	6.419	4.810	16.246	13.737	6.805	11.632	7.115	6.825	7.912	12.704	nan	9.844	12.699	8.848	0.828	1.873	1.952	0.823	1.076	0.980	16.134
4707	chr14	57395557	57396968	+	0	NA	intron (NM_030004, intron 1 of 7)	PB1D10|SINE|Alu	2221	NM_030004	68631	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	6.203	12.731	4.731	8.396	2.359	2.877	5.458	7.244	4.416	8.182	5.406	3.514	5.060	7.473	7.409	8.805	4.093	7.097	6.299	2.325	5.432	7.713	4.696	6.546	12.344
8666	chr2	130921834	130922772	+	0	NA	intron (NM_009730, intron 1 of 28)	intron (NM_009730, intron 1 of 28)	15808	NM_009730	11990	Mm.119936	NM_009730	ENSMUSG00000027312	Atrn	AW558010|Mgca|mg	attractin	protein-coding	15.322	2.199	2.629	5.034	8.849	5.824	17.619	13.477	4.356	6.557	5.692	8.230	6.936	9.283	4.859	6.385	9.015	4.684	4.968	7.136	4.852	2.885	7.494	5.770	5.616
3847	chr13	13640757	13644538	+	0	NA	intron (NM_010748, intron 8 of 52)	RSINE1|SINE|B4	52238	NM_010748	17101	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	6.234	3.775	1.405	4.250	4.644	3.040	5.911	4.211	3.975	4.684	2.328	1.674	5.586	8.577	6.224	5.302	nan	5.069	1.096	1.204	1.025	0.932	0.769	0.562	7.767
9242	chr3	37619545	37629063	+	0	NA	Intergenic	B2_Mm2|SINE|B2	10391	NR_130161	75947	Mm.109620	NR_130161	ENSMUSG00000085677	4930594O21Rik	-	RIKEN cDNA 4930594O21 gene	ncRNA	5.842	1.297	0.534	4.357	3.341	1.548	10.223	6.154	nan	5.550	3.544	2.003	8.281	9.058	7.743	9.372	5.198	8.262	nan	0.972	0.707	nan	1.359	0.971	9.293
6552	chr17	33947110	33951448	+	0	NA	TTS (NM_019420)	TTS (NM_019420)	2209	NM_019420	54218	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	7.362	1.414	0.938	7.512	5.184	3.385	4.782	3.701	4.208	5.332	1.714	1.457	4.285	8.350	4.732	6.385	4.696	6.895	1.555	1.734	1.694	1.299	1.855	1.185	7.963
6927	chr17	85010742	85012681	+	0	NA	intron (NM_001159497, intron 5 of 5)	intron (NM_001159497, intron 5 of 5)	-16636	NM_009205	20532	Mm.227176	NM_009205	ENSMUSG00000024131	Slc3a1	D2H|NBAT|NTAA|RBAT	solute carrier family 3, member 1	protein-coding	3.302	1.986	1.494	2.703	2.549	1.626	3.645	1.361	2.145	3.426	0.464	0.518	2.833	4.992	3.975	5.650	3.633	4.148	0.805	0.684	0.536	0.880	1.020	0.732	4.097
15726	chrX	49724883	49726270	+	0	NA	Intergenic	RLTR17B_Mm|LTR|ERVK	2356	NM_207631	236785	Mm.377256	NM_207631	ENSMUSG00000067971	Olfr1321	MOR264-26	olfactory receptor 1321	protein-coding	3.092	0.432	0.471	1.692	2.145	0.708	2.067	3.725	3.219	3.716	3.579	1.471	2.727	4.668	2.405	3.694	2.292	3.350	0.902	0.213	0.169	0.870	0.637	0.698	3.558
547	chr1	128055651	128057179	+	0	NA	intron (NM_027678, intron 3 of 20)	B4A|SINE|B4	46056	NM_027678	226409	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	4.845	nan	0.660	1.589	2.313	1.536	4.810	2.492	1.768	1.446	0.935	0.350	3.450	3.456	3.450	5.516	3.253	3.023	nan	0.430	0.346	0.261	0.175	0.417	2.677
631	chr1	134983294	134993161	+	0	NA	intron (NM_001033409, intron 17 of 17)	intron (NM_001033409, intron 17 of 17)	25662	NM_001278115	67196	Mm.284587	NM_026024	ENSMUSG00000026429	Ube2t	2700084L22Rik|C80607	ubiquitin-conjugating enzyme E2T	protein-coding	7.933	2.585	1.026	5.329	2.934	1.530	5.867	6.441	4.951	6.582	2.647	1.827	8.935	8.114	6.494	11.892	6.682	7.936	1.462	0.993	0.884	1.693	1.678	1.224	9.170
12667	chr6	120587576	120593367	+	0	NA	Intergenic	Intergenic	35675	NR_045733	73505	Mm.416867	NR_045733		1700072O05Rik	-	RIKEN cDNA 1700072O05 gene	ncRNA	5.557	1.323	1.294	4.997	8.255	7.466	1.925	1.985	3.818	4.150	1.327	1.375	3.281	6.155	2.695	3.253	2.759	5.229	0.655	0.745	0.956	0.473	nan	0.658	4.553
1422	chr10	74622892	74624171	+	0	NA	intron (NM_001142740, intron 29 of 31)	MTE2a|LTR|ERVL-MaLR	-343700	NM_010311	14687	Mm.32595	NM_010311	ENSMUSG00000040009	Gnaz	AI847979|Gz	guanine nucleotide binding protein, alpha z subunit	protein-coding	2.092	1.173	0.339	nan	0.793	0.611	3.040	3.519	1.539	0.994	0.453	0.777	3.604	3.364	3.740	4.717	2.887	2.216	nan	0.392	0.456	0.762	0.261	0.558	3.005
7856	chr19	47925450	47934968	+	0	NA	Intergenic	B1_Mur4|SINE|Alu	-7503	NM_001163267	381229	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	2.400	1.248	0.603	nan	0.626	0.412	3.291	5.163	1.946	1.808	6.276	4.394	2.193	2.536	2.678	3.126	2.150	3.741	0.412	0.312	0.296	0.442	0.209	0.276	2.753
949	chr1	182570605	182578214	+	0	NA	intron (NM_130890, intron 2 of 20)	intron (NM_130890, intron 2 of 20)	9402	NM_130890	170725	Mm.189201	NM_130890	ENSMUSG00000038599	Capn8	nCL-2|nCL-2'	calpain 8	protein-coding	3.161	4.909	1.696	1.991	1.189	0.624	2.062	1.976	1.564	2.580	1.372	0.751	2.089	nan	2.645	4.278	2.800	3.447	5.584	3.473	2.804	5.763	5.528	4.453	4.933
13754	chr7	133922551	133924984	+	0	NA	intron (NM_007400, intron 14 of 22)	intron (NM_007400, intron 14 of 22)	-140982	NM_001286031	101437	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	4.500	nan	1.499	5.426	4.091	3.823	4.289	5.467	nan	2.859	1.988	1.901	3.690	4.499	5.257	4.981	4.360	4.999	3.241	1.944	2.525	3.701	2.258	2.953	5.468
4713	chr14	57756601	57758303	+	0	NA	Intergenic	B3|SINE|B2	-11329	NM_015771	50523	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	4.609	nan	0.423	1.444	1.052	0.388	1.894	4.525	1.960	2.755	1.344	0.630	3.245	5.871	3.523	4.043	3.910	2.555	0.671	0.390	0.314	0.484	0.476	0.281	5.286
14242	chr8	60395439	60397609	+	0	NA	Intergenic	Intergenic	-109600	NM_011834	23923	Mm.35020	NM_011834	ENSMUSG00000057228	Aadat	AI875679|Aadt|KATII|Kat2|Kyat2|mKat-2	aminoadipate aminotransferase	protein-coding	0.227	0.460	0.499	0.329	0.205	0.056	0.291	0.151	0.106	0.153	0.252	0.212	0.101	0.186	0.179	0.482	0.284	0.308	1.447	4.183	1.615	4.941	1.061	0.562	0.184
9071	chr2	173095392	173103543	+	0	NA	intron (NM_001081387, intron 9 of 10)	(TCTG)n|Simple_repeat|Simple_repeat	20058	NM_001081387	664799	Mm.389396	NM_001081387	ENSMUSG00000070495	Ctcfl	Boris|OTTMUSG00000016680	CCCTC-binding factor (zinc finger protein)-like	protein-coding	4.571	4.810	1.294	4.693	2.835	1.545	4.655	7.815	5.322	8.990	5.548	4.013	6.496	5.450	5.419	6.994	5.442	5.564	2.261	1.002	1.367	2.380	1.292	1.547	8.903
8995	chr2	165817562	165819702	+	0	NA	intron (NM_027230, intron 13 of 23)	PB1D9|SINE|Alu	39541	NM_001252585	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	9.618	13.495	7.898	9.928	8.564	7.075	7.037	8.743	4.934	10.209	6.015	5.133	5.928	7.679	6.221	7.792	7.885	5.841	nan	5.474	6.236	4.245	5.969	7.219	11.716
5262	chr15	64065445	64066608	+	0	NA	Intergenic	RLTR17B_Mm|LTR|ERVK	-5578	NM_144846	223601	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	4.931	5.465	2.159	3.392	1.591	1.056	4.557	4.459	2.289	2.396	1.305	1.342	3.839	4.590	3.770	2.884	2.539	4.330	1.167	1.245	0.712	1.145	1.119	0.701	4.180
9292	chr3	51847442	51852066	+	0	NA	intron (NM_001004176, intron 2 of 4)	intron (NM_001004176, intron 2 of 4)	188575	NM_001310482	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	8.529	2.412	0.903	7.588	4.593	2.769	9.764	8.247	6.298	7.157	6.777	4.487	9.470	11.857	10.354	10.723	8.346	9.970	5.385	3.428	1.832	5.555	4.870	3.757	12.067
8760	chr2	146384195	146389028	+	0	NA	intron (NM_001033348, intron 24 of 40)	intron (NM_001033348, intron 24 of 40)	125393	NM_001033348	241694	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	6.597	0.825	0.434	4.404	2.882	1.453	3.166	6.912	4.061	4.761	1.415	1.392	5.969	4.734	3.699	4.971	6.067	5.690	nan	2.050	0.941	3.218	3.475	2.188	3.209
4970	chr14	121430489	121431711	+	0	NA	Intergenic	Intergenic	-51870	NM_145465	223255	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	1.522	0.658		1.857	1.792	3.179	1.807	2.433	1.997	2.330	0.502	0.737	2.040	3.469	2.532	2.701	1.192	3.532	0.971	0.850	0.602	1.017	1.442	0.892	2.838
8367	chr2	73446117	73448441	+	0	NA	intron (NM_001289722, intron 2 of 7)	intron (NM_001289722, intron 2 of 7)	6610	NM_001289722	215280	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	3.201	0.754	0.310	nan	0.940	0.320	3.781	4.178	1.489	1.992	0.961	0.477	5.442	4.434	nan	4.697	3.070	3.499	0.495	0.416	0.389	0.835	0.515	0.121	2.354
7591	chr19	12533676	12541869	+	0	NA	Intergenic	Intergenic	-35738	NM_001346545	107373	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	7.913	7.330	3.381	4.562	4.514	1.635	6.120	4.888	nan	4.574	4.263	1.548	4.725	7.646	7.051	6.530	5.565	7.682	0.743	0.982	0.637	0.694	0.550	0.344	7.951
15879	chrX	165110218	165112177	+	0	NA	Intergenic	L1ME3A|LINE|L1	130605	NM_175027	237211	Mm.336317	NM_175027	ENSMUSG00000047757	Fancb	BC022692	Fanconi anemia, complementation group B	protein-coding	4.974	7.074	2.439	5.462	2.204	1.458	3.071	4.995	2.396	4.609	2.902	1.686	4.178	5.413	4.973	11.000	2.999	4.374	3.442	1.447	1.710	4.554	2.914	2.281	7.280
13819	chr7	139197260	139202495	+	0	NA	intron (NM_001162540, intron 1 of 11)	ORR1C2|LTR|ERVL-MaLR	-11383	NM_021302	57740	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	0.469	nan	0.385	0.429	0.254	0.099	0.293	0.332	nan	0.562	0.257	0.381	0.169	0.263	0.317	0.573	0.345	0.405	1.967	1.490	1.167	4.873	2.694	1.734	0.580
13301	chr7	75812338	75813693	+	0	NA	Intergenic	IAPEz-int|LTR|ERVK	-35323	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	3.615	2.341	0.746	1.985	1.442	0.727	1.742	1.844	1.334	1.562	7.807	2.461	3.904	4.017	2.094	2.157	2.923	2.579	1.341	1.133	0.679	1.217	0.820	0.211	1.824
7731	chr19	34825897	34828544	+	0	NA	exon (NM_023792, exon 3 of 7)	exon (NM_023792, exon 3 of 7)	-6447	NR_029783	723826		NR_029783	ENSMUSG00000065594	Mir107	Mirn107|mir-107|mmu-mir-107	microRNA 107	ncRNA	3.442	0.665	0.790	1.603	2.053	1.009	9.275	9.310	2.021	2.800	1.250	1.673	4.992	6.539	5.457	5.537	13.092	1.623	3.742	5.244	2.005	3.653	6.238	4.614	1.490
7903	chr19	57347274	57350442	+	0	NA	intron (NR_040316, intron 1 of 2)	intron (NR_040316, intron 1 of 2)	12041	NR_040316	320879	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	4.122	nan	0.670	5.761	3.671	1.874	0.843	3.786	4.466	6.235	2.063	2.586	1.803	3.844	2.247	5.159	2.828	5.153	1.740	2.234	1.549	3.889	3.418	2.968	5.850
1276	chr10	44809776	44812703	+	0	NA	Intergenic	RMER16-int|LTR|ERVK	-255975	NM_011156	19072	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	5.308	6.401	3.843	2.526	2.155	1.525	2.720	1.812	3.402	2.944	3.653	0.711	3.184	3.647	2.860	3.924	3.665	5.339	nan	1.177	0.577	1.514	0.698	0.360	5.685
5958	chr16	26088054	26090694	+	0	NA	intron (NM_173379, intron 1 of 14)	intron (NM_173379, intron 1 of 14)	16410	NM_173379	210530	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	2.804	0.816	0.727	0.941	2.213	1.259	3.325	4.095	1.568	1.371	5.342	1.113	2.572	2.626	2.507	3.732	2.822	2.179	1.035	0.793	0.520	1.151	nan	0.402	1.637
11310	chr5	66787886	66792187	+	0	NA	intron (NM_001001980, intron 1 of 25)	intron (NM_001001980, intron 1 of 25)	44196	NM_001001980	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding	1.770	0.565	0.354	1.022	0.444	0.320	5.029	4.005	1.670	1.929	0.447	0.501	6.234	5.210	5.215	6.160	3.323	2.317	0.559	0.368	0.156	nan	0.409	0.215	1.507
7560	chr19	10236634	10238401	+	0	NA	intron (NM_001033481, intron 1 of 25)	intron (NM_001033481, intron 1 of 25)	3231	NM_001033481	225908	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	0.786	0.426	0.319	0.585	0.395	0.283	0.724	1.480	nan	0.906	4.876	1.633	0.696	0.669	0.529	nan	0.710	1.062	0.286	0.763	0.295	0.870	0.498	0.293	0.413
9814	chr3	133204462	133209934	+	0	NA	intron (NM_029953, intron 1 of 3)	intron (NM_029953, intron 1 of 3)	27691	NM_029953	77669	Mm.98630	NM_029953	ENSMUSG00000040969	Arhgef38	9130221D24Rik|D630013G24Rik	Rho guanine nucleotide exchange factor (GEF) 38	protein-coding	8.023	nan	2.052	5.202	4.780	3.062	8.963	7.068	5.074	7.810	6.798	4.635	7.170	8.429	7.160	7.301	6.942	7.560	3.387	2.808	2.781	3.488	3.565	3.944	8.307
12730	chr6	128051209	128059982	+	0	NA	intron (NM_175414, intron 2 of 8)	intron (NM_175414, intron 2 of 8)	87983	NM_175414	109246	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597	tetraspanin 9	protein-coding	6.348	nan	0.312	8.455	4.682	2.959	7.545	7.835	4.757	5.635	4.776	2.209	8.548	10.205	8.998	13.046	6.603	8.478	1.419	1.336	1.313	1.621	1.152	1.038	9.954
11961	chr5	148241343	148243036	+	0	NA	intron (NM_029920, intron 7 of 14)	intron (NM_029920, intron 7 of 14)	150626	NM_001301424	11987	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	12.005	24.512	7.133	14.908	8.232	7.509	13.138	8.959	nan	27.026	10.143	5.130	9.095	13.437	11.803	12.976	7.618	11.243	6.033	2.166	6.562	6.730	4.096	10.072	21.870
4121	chr13	51736981	51743166	+	0	NA	intron (NM_001281880, intron 2 of 16)	intron (NM_001281880, intron 2 of 16)	53674	NM_001281880	20354	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	5.713	5.516	3.159	nan	3.707	2.704	6.485	6.117	2.821	2.607	2.680	2.024	5.058	7.037	5.698	5.881	4.683	4.505	2.774	nan	2.209	2.256	3.162	3.155	5.944
9472	chr3	89350444	89364314	+	0	NA	intron (NM_029974, intron 7 of 15)	intron (NM_029974, intron 7 of 15)	-7351	NM_009614	11490	Mm.274049	NM_009614	ENSMUSG00000028041	Adam15	AD56|MDC15	a disintegrin and metallopeptidase domain 15 (metargidin)	protein-coding	0.932	0.530	0.241	0.910	0.710	0.562	0.979	0.722	0.685	0.948	0.283	0.218	1.206	1.198	0.883	nan	0.625	1.212	nan	3.148	3.282	7.013	2.282	2.216	1.394
4315	chr13	98685216	98687197	+	0	NA	TTS (NM_001025606)	TTS (NM_001025606)	8625	NM_001025606	380863	Mm.28264	NM_001025606	ENSMUSG00000052485	Tmem171	Gm905	transmembrane protein 171	protein-coding	2.566	0.447	0.462	1.442	1.750	1.097	2.881	3.575	2.906	3.631	2.955	3.548	3.183	3.235	2.570	3.232	nan	3.176	0.833	0.620	0.769	0.878	0.993	0.640	2.747
5583	chr15	95666312	95670847	+	0	NA	Intergenic	Intergenic	-13808	NM_207533	223843	Mm.152937	NM_207533	ENSMUSG00000045608	Dbx2	9430056A22Rik|9630005K15|AI846217|Gm1229	developing brain homeobox 2	protein-coding	4.944	1.371	1.162	2.622	2.808	1.599	7.034	6.099	2.226	3.808	1.932	1.299	6.253	6.837	5.335	nan	5.783	4.000	0.705	0.731	0.514	0.612	0.934	0.828	4.979
12337	chr6	81989691	81993932	+	0	NA	Intergenic	Intergenic	-25862	NM_026490	56284	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding	7.431	0.582	0.229	3.905	2.945	1.459	15.390	10.816	5.864	9.556	5.701	1.896	10.383	13.311	9.994	14.056	9.861	6.655	0.615	0.899	0.636	0.488	0.709	0.247	13.281
75	chr1	33810812	33814993	+	0	NA	intron (NM_001290699, intron 2 of 12)	intron (NM_001290699, intron 2 of 12)	1693	NM_133817	98403	Mm.289103	NM_133817	ENSMUSG00000042197	Zfp451	4930515K21Rik|4933435G09Rik|AI596398|COASTER|Kiaa0576-hp|Znf451|mKIAA1702	zinc finger protein 451	protein-coding	8.217	2.498	0.828	2.950	1.250	0.996	5.762	5.668	2.475	3.759	4.345	1.825	5.850	5.521	7.382	10.849	4.410	6.391	1.565	0.387	0.432	2.581	0.532	0.524	8.315
7642	chr19	23125090	23126747	+	0	NA	Intergenic	MIR|SINE|MIR	-15308	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	nan	0.545	0.409	nan	1.303	0.523	1.614	3.090	1.502	1.272	nan	0.425	1.261	3.424	1.758	1.792	1.797	1.278	nan	0.745	0.074	0.497	nan	0.400	1.820
2588	chr11	86767878	86783593	+	0	NA	exon (NM_026191, exon 14 of 18)	exon (NM_026191, exon 14 of 18)	-18243	NM_001003908	67300	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	5.891	1.511	0.712	nan	2.861	1.489	5.218	5.482	3.520	3.885	1.581	1.626	5.063	6.186	6.399	7.292	4.292	6.459	2.683	1.693	1.388	nan	1.628	1.186	6.627
14046	chr8	13594656	13595598	+	0	NA	intron (NM_009025, intron 7 of 23)	intron (NM_009025, intron 7 of 23)	-32666	NM_001080781	66501	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	4.938	19.178	5.425	4.097	1.254	0.962	2.918	3.153	3.303	3.505	5.936	3.621	2.530	4.457	3.963	4.260	1.100	3.854	0.886	1.238	0.723	1.666	0.464	0.141	3.702
13573	chr7	117229719	117232856	+	0	NA	Intergenic	Intergenic	-149692	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	5.288	0.933	1.021	5.102	7.731	6.202	5.138	9.893	4.808	3.892	3.461	2.789	8.680	9.728	9.208	6.677	6.821	8.104	1.561	1.137	1.055	1.187	4.028	3.549	6.818
1163	chr10	20394346	20396238	+	0	NA	Intergenic	Intergenic	47473	NM_027930	71804	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	4.654	0.737	0.858	2.934	3.516	2.429	1.670	1.848	3.925	3.651	0.783	1.212	2.893	4.396	3.126	3.640	3.152	4.031	0.948	1.530	1.311	2.479	0.634	0.840	2.891
8163	chr2	33607875	33618324	+	0	NA	intron (NM_010725, intron 2 of 7)	intron (NM_010725, intron 2 of 7)	27412	NM_010725	16917	Mm.39825	NM_010725	ENSMUSG00000038765	Lmx1b	Icst|LMX1.1|LMX1.2	LIM homeobox transcription factor 1 beta	protein-coding	3.962	1.847	0.481	3.024	1.549	0.721	3.349	nan	2.865	nan	1.722	0.534	4.384	4.675	4.505	5.467	3.200	3.892	1.285	0.608	0.504	1.469	0.608	0.407	9.533
11150	chr5	34030682	34033927	+	0	NA	intron (NM_181857, intron 19 of 24)	intron (NM_181857, intron 19 of 24)	36320	NM_001001985	269642	Mm.274610	NM_001001985	ENSMUSG00000048142	Nat8l	1110038O08Rik|Shati	N-acetyltransferase 8-like	protein-coding	2.726	1.352	0.363	8.125	1.050	0.378	0.699	1.360	1.566	2.545	1.318	0.448	0.641	2.019	2.240	2.467	nan	3.563	0.554	0.353	0.810	1.305	0.588	0.367	2.229
8398	chr2	83563344	83571348	+	0	NA	Intergenic	L1Md_F3|LINE|L1	-77232	NM_026934	69082	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	10.416	5.727	3.383	6.560	6.578	5.105	9.666	8.683	6.085	9.444	6.079	6.004	7.984	9.125	7.082	8.142	9.723	8.030	2.919	3.080	2.795	3.062	5.200	4.506	9.460
1702	chr10	107735641	107738425	+	0	NA	Intergenic	Intergenic	-17006	NM_001081432	237523	Mm.391418	NM_001081432	ENSMUSG00000035916	Ptprq	-	protein tyrosine phosphatase, receptor type, Q	protein-coding	4.395	0.738	0.791	2.435	8.560	6.713	2.410	4.883	5.436	7.434	5.466	2.985	3.961	5.593	2.731	2.747	3.814	3.876	1.238	1.308	1.595	0.654	2.134	2.368	2.498
4518	chr14	21888869	21891242	+	0	NA	Intergenic	Intergenic	-41145	NM_026965	69156	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	2.068	0.797	0.330	2.333	2.127	1.578	1.583	2.029	3.436	2.888	0.548	0.470	2.814	2.622	2.711	4.035	1.760	3.318	0.720	0.304	0.587	nan	0.686	0.885	3.425
13713	chr7	129074455	129087464	+	0	NA	Intergenic	Intergenic	-176135	NM_001080963	381925	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	4.735	0.943	0.584	4.944	3.205	1.855	4.861	5.336	5.155	6.541	1.482	0.830	7.993	7.978	nan	5.855	4.144	7.563	1.799	0.703	0.666	0.856	1.909	1.382	7.110
3118	chr11	120545338	120549166	+	0	NA	intron (NM_001033231, intron 1 of 4)	B1_Mus1|SINE|Alu	2475	NM_001033231	192173	Mm.262300	NM_001033231	ENSMUSG00000061111	Fam195b	Mcrip1	family with sequence similarity 195, member B	protein-coding	4.010	nan	0.211	5.258	2.506	0.754	4.635	5.086	2.462	3.631	1.592	0.948	6.688	7.763	4.787	6.114	5.465	6.662	1.594	nan	1.396	3.768	2.143	1.499	6.863
12915	chr7	5031503	5034937	+	0	NA	TTS (NM_001290426)	TTS (NM_001290426)	5226	NM_001039532	654801	Mm.333548	NM_001039532	ENSMUSG00000043290	Zfp784	C730049F21Rik|Znf784	zinc finger protein 784	protein-coding	7.960	10.064	6.278	5.566	4.134	2.153	6.551	8.158	3.829	7.724	3.976	3.386	5.000	7.365	5.776	6.294	4.791	5.950	3.394	3.242	2.234	3.863	2.488	2.364	9.124
14360	chr8	79750974	79752585	+	0	NA	intron (NM_026904, intron 4 of 4)	B3|SINE|B2	39959	NM_026904	68999	Mm.257445	NM_026904	ENSMUSG00000036977	Anapc10	1500026N15Rik|A830003M23Rik|APC10	anaphase promoting complex subunit 10	protein-coding	3.318	nan	0.114	2.549	1.096	0.229	nan	4.910	nan	2.009	1.259	0.559	6.050	5.208	4.406	7.678	4.804	6.369	1.884	2.212	1.210	3.259	1.823	1.410	5.034
13248	chr7	71300123	71302125	+	0	NA	Intergenic	Intergenic	-608571	NR_130995	78156	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	9.422	2.591	0.825	6.478	3.566	2.060	5.316	9.174	4.622	4.901	2.916	2.893	5.656	6.351	4.120	4.211	3.557	6.308	1.003	1.510	1.285	1.252	1.134	0.420	6.462
4141	chr13	53069491	53083889	+	0	NA	Intergenic	L1_Mur3|LINE|L1	-95651	NM_017373	18030	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	nan	3.729	1.402	5.779	7.177	4.614	4.354	6.300	4.048	9.038	3.039	1.987	5.645	nan	6.036	nan	3.707	nan	0.908	0.940	0.852	2.093	0.735	0.658	6.522
9743	chr3	121258347	121272246	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-1980	NM_178936	99887	Mm.26088	NM_178936	ENSMUSG00000028132	Tmem56	4930577M16Rik|AU018104|AW109744|C730036B01Rik	transmembrane protein 56	protein-coding	4.051	0.631	0.470	5.164	5.579	2.972	6.472	4.203	5.067	nan	3.546	2.259	5.571	8.850	4.521	nan	3.740	6.589	1.402	0.649	0.583	0.909	nan	0.607	nan
5212	chr15	58890195	58898269	+	0	NA	intron (NM_175151, intron 11 of 11)	intron (NM_175151, intron 11 of 11)	5003	NM_175226	75841	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	2.325	10.302	4.556	nan	1.221	0.586	nan	2.663	nan	nan	0.919	0.556	2.282	1.600	2.448	2.240	1.810	2.310	1.587	1.121	0.500	1.286	1.030	0.846	2.314
6313	chr17	6998230	6999380	+	0	NA	TTS (NM_026611)	TTS (NM_026611)	19945	NM_026611	68195	Mm.181237	NM_026611	ENSMUSG00000094724	Rnaset2b	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2B	protein-coding	3.581	1.039	0.620	4.413	3.569	1.395	2.370	3.249	1.991	2.601	1.443	1.024	2.150	3.800	3.903	5.293	1.743	3.341	nan	0.190	0.571	1.150	0.498	0.287	7.482
6565	chr17	34398785	34403279	+	0	NA	intron (NM_001001177, intron 1 of 19)	RodERV21-int|LTR|ERV1	2212	NM_001163855	407788	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	8.332	19.435	8.284	4.572	2.063	0.981	6.911	3.830	3.145	4.664	0.512	0.807	7.613	7.176	5.604	8.053	4.215	7.259	0.747	1.352	1.040	0.399	0.367	0.339	11.045
146	chr1	41024352	41028280	+	0	NA	Intergenic	Intergenic	154936	NR_040475	74897	Mm.243822	NR_040475	ENSMUSG00000104072	4930448I06Rik	-	RIKEN cDNA 4930448I06 gene	ncRNA	0.239	0.464	0.162	0.239	0.027	0.080	0.306	0.256	0.244	0.196	0.219	0.161	0.136	0.040	0.272	nan	0.485	0.240	7.544	2.130	0.822	3.000	1.926	1.277	0.335
5343	chr15	75770556	75773389	+	0	NA	intron (NM_172121, intron 9 of 11)	L1MDa|LINE|L1	-24050	NM_194350	378435	Mm.309589	NM_194350	ENSMUSG00000047591	Mafa	RIPE3b1	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian)	protein-coding	6.527	4.587	1.523	6.177	3.380	1.905	7.404	10.141	4.598	nan	4.973	2.550	7.536	7.447	6.663	6.623	5.270	7.171	2.275	1.420	1.311	nan	1.602	1.424	8.691
7214	chr18	46285490	46289353	+	0	NA	exon (NM_001160399, exon 7 of 10)	exon (NM_001160399, exon 7 of 10)	-6571	NM_172627	225467	Mm.262096	NM_172627	ENSMUSG00000024477	Pggt1b	2010207C17Rik|2610100E13|AI451237|AI551093|BGG1|GGT1	protein geranylgeranyltransferase type I, beta subunit	protein-coding	6.396	0.557	0.473	2.708	1.940	1.153	1.828	3.492	3.657	4.584	0.547	0.396	2.684	4.629	3.019	3.578	3.619	nan	0.450	0.350	0.159	0.599	0.485	0.244	6.423
1351	chr10	61882728	61886325	+	0	NA	intron (NM_001304757, intron 16 of 37)	intron (NM_001304757, intron 16 of 37)	94582	NM_001304757	12817	Mm.300931	NM_007731	ENSMUSG00000058806	Col13a1	-	collagen, type XIII, alpha 1	protein-coding	8.077	0.460	0.619	4.234	6.000	5.379	4.156	7.785	6.969	8.611	0.895	1.416	7.825	10.797	5.539	6.684	5.387	6.604	nan	0.384	0.716	0.496	0.587	0.358	7.215
9406	chr3	85411456	85413558	+	0	NA	Intergenic	RMER4A|LTR|ERVK	-54870	NR_130326	100316670		NR_130326	ENSMUSG00000080424	Mir466k	Mirn466k|mmu-mir-466k	microRNA 466k	ncRNA	2.066	0.657	0.289	2.455	1.480	0.332	0.971	0.636	3.855	3.506	0.502	0.460	2.522	2.326	2.147	3.263	3.482	4.648	nan	0.467	0.172	0.581	0.774	0.336	4.302
2720	chr11	97223230	97225821	+	0	NA	intron (NM_008942, intron 16 of 22)	intron (NM_008942, intron 16 of 22)	-36633	NM_008379	16211	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	5.587	9.873	1.743	10.375	4.024	2.414	4.963	6.706	4.373	13.605	4.715	3.168	5.803	6.924	7.809	9.125	3.483	8.204	4.768	nan	3.489	6.836	nan	nan	11.979
528	chr1	121957149	121961166	+	0	NA	Intergenic	Intergenic	-391177	NM_025860	66942	Mm.44219	NM_025860	ENSMUSG00000001674	Ddx18	2310005B10Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding	3.850	0.837	0.394	2.031	1.769	0.708	3.187	4.294	2.251	3.408	0.730	0.328	2.939	2.730	3.160	6.490	3.854	3.763	0.558	0.482	0.374	0.865	0.251	0.380	7.526
8700	chr2	134917411	134919218	+	0	NA	intron (NM_019677, intron 2 of 32)	ORR1B1|LTR|ERVL-MaLR	132150	NM_001145830	18795	Mm.330607	NM_019677	ENSMUSG00000051177	Plcb1	3110043I21Rik|AI132408|Plcb|mKIAA0581	phospholipase C, beta 1	protein-coding	4.795	0.365	0.403	2.627	1.193	0.604	4.146	3.602	4.899	3.785	1.929	3.156	6.688	4.154	4.399	4.770	4.106	6.077	1.529	0.742	0.127	0.927	0.755	0.270	2.827
8556	chr2	118396977	118398591	+	0	NA	intron (NM_001177806, intron 1 of 37)	B2_Mm2|SINE|B2	8672	NM_001177806	27103	Mm.217616	NM_013719	ENSMUSG00000005102	Eif2ak4	2610011M03|GCN2|MGCN2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding	2.229	1.137	0.641	2.905	2.733	1.416	1.910	2.444	2.099	3.992	0.557	0.616	1.831	2.894	1.262	3.516	2.173	4.166	0.530	0.525	0.556	0.386	0.718	0.476	3.116
164	chr1	51938675	51943145	+	0	NA	Intergenic	Intergenic	-24932	NM_001161817	17912	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	2.841	0.512	0.405	1.934	1.642	0.563	1.706	2.641	2.671	2.810	0.678	0.970	4.181	4.978	3.558	5.898	4.512	3.897	nan	0.937	0.333	1.374	1.693	1.105	3.167
13208	chr7	54001414	54002709	+	0	NA	Intergenic	Lx2|LINE|L1	-110172	NR_105746	102466619		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	3.454	1.218	0.497	3.356	0.838	0.567	1.331	1.315	2.633	4.103	0.454	0.319	2.533	4.494	4.247	3.251	2.432	4.340	0.546	0.525	0.196	0.804	0.400	0.243	4.675
14382	chr8	83620760	83624432	+	0	NA	Intergenic	Intergenic	14048	NM_001308227	81489	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	0.533	0.688	0.585	0.602	0.217	0.059	0.307	0.758	nan	0.345	0.330	0.275	0.288	0.313	0.422	0.674	0.581	0.528	nan	2.140	1.151	4.652	4.146	2.907	0.571
15730	chrX	53720429	53722779	+	0	NA	Intergenic	Intergenic	-3227	NM_029142	75013	Mm.336332	NM_029142	ENSMUSG00000055555	4930502E18Rik	Ct55	RIKEN cDNA 4930502E18 gene	protein-coding	3.786	0.334	0.510	2.632	4.076	2.648	2.962	3.468	2.069	3.523	0.827	0.527	4.150	5.141	4.066	5.415	3.910	3.828	1.619	1.302	1.227	0.921	1.705	1.607	3.323
7803	chr19	44528858	44535478	+	0	NA	intron (NM_001033343, intron 9 of 25)	intron (NM_001033343, intron 9 of 25)	13680	NM_001033343	240667	Mm.329873	NM_001033343	ENSMUSG00000051984	Sec31b	Gm341|Sec31l2	Sec31 homolog B (S. cerevisiae)	protein-coding	2.182	1.344	0.832	nan	3.015	1.501	4.003	6.663	3.668	6.411	2.325	0.880	5.091	7.349	3.800	4.428	2.926	3.068	0.368	0.551	0.379	1.167	0.619	0.284	4.110
8728	chr2	141941563	141943967	+	0	NA	intron (NM_001013802, intron 8 of 18)	AT_rich|Low_complexity|Low_complexity	958699	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	3.960	0.341	0.335	2.460	2.282	1.246	3.544	1.314	4.527	4.117	2.603	0.423	5.169	4.811	3.108	4.744	4.500	5.639	0.648	0.949	0.408	0.475	0.370	0.261	2.355
5030	chr15	8391865	8397670	+	0	NA	intron (NM_201232, intron 1 of 45)	MIRb|SINE|MIR	49696	NM_027707	71175	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	Nipped-B homolog (Drosophila)	protein-coding	9.264	11.211	4.504	9.008	5.281	3.597	9.587	11.166	5.844	10.094	5.869	4.478	9.990	9.536	9.357	8.785	8.484	8.648	5.748	2.963	3.270	5.422	3.910	4.875	10.346
7249	chr18	55075687	55077780	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-86553	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	5.480	nan	0.663	4.315	5.120	1.957	4.093	2.575	3.296	4.495	1.837	1.686	5.594	5.203	5.078	8.299	7.348	5.781	nan	2.015	1.463	nan	2.997	1.947	5.720
13865	chr7	146549708	146551310	+	0	NA	Intergenic	Intergenic	1235674	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	4.264	1.951	0.560	6.048	3.767	1.722	2.897	6.308	2.336	2.975	0.915	0.870	2.687	5.309	4.847	3.557	2.076	3.920	2.855	1.955	2.225	6.208	nan	1.030	4.606
2898	chr11	106285917	106291600	+	0	NA	TTS (NM_029467)	TTS (NM_029467)	12086	NM_029467	75870	Mm.159608	NM_029467	ENSMUSG00000020712	Tcam1	4930570F09Rik|AI429105	testicular cell adhesion molecule 1	protein-coding	4.551	2.401	1.041	nan	3.887	3.129	3.835	5.118	nan	nan	2.002	1.640	5.877	8.411	6.939	7.165	4.424	7.442	2.382	0.875	0.579	nan	1.114	1.043	3.789
10165	chr4	62692726	62696550	+	0	NA	intron (NM_001310706, intron 2 of 6)	MIR|SINE|MIR	20664	NM_001310706	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	4.031	nan	0.307	1.640	0.866	0.610	6.972	4.613	1.598	1.392	1.267	0.698	5.964	7.804	6.786	6.370	4.323	3.949	nan	0.478	0.592	1.480	1.309	0.695	6.883
8647	chr2	127997308	127998972	+	0	NA	intron (NM_028765, intron 11 of 17)	Lx|LINE|L1	-127898	NM_207681	12125	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	2.102	0.972	0.527	2.497	0.988	0.242	2.109	4.933	1.990	1.760	0.857	1.331	2.807	3.550	3.318	nan	1.928	3.559	nan	0.631	0.511	2.351	0.877	0.577	3.469
882	chr1	173299743	173309209	+	0	NA	Intergenic	Intergenic	-26720	NM_001205011	100504232	Mm.482546	NM_001205011	ENSMUSG00000079180	Mptx2	ENSMUSG00000079180|Gm11062	mucosal pentraxin 2	protein-coding	5.109	0.791	0.386	3.072	3.306	2.378	5.072	5.337	2.558	3.613	4.063	1.658	5.033	6.970	5.238	8.702	5.015	4.453	1.081	0.959	1.024	1.177	1.091	0.942	6.214
15749	chrX	71514202	71517797	+	0	NA	Intergenic	Intergenic	-23150	NM_001199349	171486	Mm.283879	NM_138309	ENSMUSG00000035776	Cd99l2	AW548191|Mic2l1|Xap89	CD99 antigen-like 2	protein-coding	5.036	5.710	2.323	5.068	2.994	1.969	3.522	4.932	4.617	3.802	4.050	2.637	4.709	5.424	6.083	6.244	3.638	5.344	3.991	1.927	2.809	4.707	2.376	2.356	5.387
13060	chr7	29220259	29222934	+	0	NA	TTS (NM_001033525)	TTS (NM_001033525)	-7563	NM_001164658	320225	Mm.349382	NM_001039721	ENSMUSG00000049676	Catsperg1	A230107C01Rik|Catsperg	catsper channel auxiliary subunit gamma 1	protein-coding	8.724	7.795	3.314	9.293	7.915	5.554	7.575	9.798	4.736	10.529	4.983	3.724	6.348	10.103	6.750	7.950	7.207	7.901	2.923	3.556	4.227	3.950	4.103	4.495	10.321
8938	chr2	163291531	163293794	+	0	NA	intron (NM_001098799, intron 3 of 8)	B4A|SINE|B4	67208	NM_001098799	269389	Mm.207709	NM_001098799	ENSMUSG00000074607	Tox2	AI851523|AV026525|BI987407|Gcx1|RxHMG1	TOX high mobility group box family member 2	protein-coding	1.682	0.731	0.615	1.696	2.625	1.577	1.308	3.799	2.564	2.241	1.544	1.365	1.941	2.458	2.522	4.286	3.559	3.669	nan	0.640	0.812	0.697	0.488	0.892	4.317
11506	chr5	104216972	104219845	+	0	NA	Intergenic	Intergenic	15791	NM_016779	13406	Mm.199008	NM_016779	ENSMUSG00000029307	Dmp1	AV020965|Dmp|PP	dentin matrix protein 1	protein-coding	4.762	1.486	1.013	7.404	3.526	2.179	1.966	4.241	4.022	3.502	1.639	2.095	1.980	3.522	2.673	3.719	2.982	5.134	2.981	3.706	2.646	4.708	1.829	1.670	2.742
5936	chr16	24474655	24477766	+	0	NA	intron (NM_001145952, intron 2 of 11)	L1MC4|LINE|L1	28119	NM_001145952	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	5.351	5.088	4.284	3.100	3.164	1.304	4.222	8.054	3.683	3.238	3.900	3.152	4.823	5.963	5.358	5.304	3.587	7.314	1.801	1.389	0.394	1.340	nan	0.588	4.337
10361	chr4	107741877	107748712	+	0	NA	Intergenic	Intergenic	-56965	NR_033496	16975	Mm.442134	NM_053073	ENSMUSG00000028613	Lrp8	4932703M08Rik|AA921429|AI848122|ApoER2|Lr8b	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	protein-coding	5.547	2.278	1.386	4.573	5.862	3.373	2.777	nan	5.872	6.003	2.521	2.409	5.195	6.610	4.777	6.999	6.105	nan	2.430	2.914	2.409	2.230	1.931	1.646	4.885
8774	chr2	147823639	147828261	+	0	NA	Intergenic	L1M4c|LINE|L1	115257	NR_046014	381384	Mm.259809	NR_046014	ENSMUSG00000051986	A530006G24Rik	Gm1003	RIKEN cDNA A530006G24 gene	ncRNA	1.142	0.747	0.479	0.753	0.572	0.314	1.369	2.278	1.555	0.975	0.217	0.802	1.771	1.619	1.623	2.334	2.107	1.976	nan	2.409	1.569	3.925	2.351	1.751	1.631
7217	chr18	46585520	46587175	+	0	NA	3' UTR (NM_025698, exon 3 of 3)	3' UTR (NM_025698, exon 3 of 3)	11188	NM_025698	66676	Mm.296043	NM_025698	ENSMUSG00000033184	Tmed7	3930401E15Rik|5830493P14Rik|AU044611|AW545765|TRAM	transmembrane p24 trafficking protein 7	protein-coding	0.970	1.119	0.783	0.631	0.403	0.179	0.551	1.146	0.641	0.564	0.694	0.556	0.423	0.465	0.450	0.816	0.664	1.154	7.819	4.784	1.239	6.232	4.658	3.176	0.499
12011	chr5	151953540	151958811	+	0	NA	Intergenic	Intergenic	-304967	NM_027009	69263	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	4.980	0.650	0.724	3.878	6.121	2.914	2.267	2.803	nan	4.753	1.959	1.160	2.038	5.937	2.700	3.522	2.405	6.217	1.136	1.744	0.893	0.956	1.090	0.940	3.229
4585	chr14	32062267	32065195	+	0	NA	Intergenic	MT2A|LTR|ERVL	21555	NR_104305	105638	Mm.2519	NM_172254	ENSMUSG00000021905	Dph3	DELGIP1|DelgipP1|Desr1|KTI11|Zcsl2	diphthamine biosynthesis 3	protein-coding	7.803	10.999	4.660	9.166	5.289	4.347	5.532	7.638	6.466	9.586	4.200	3.540	7.317	9.387	8.425	8.748	5.179	7.875	3.658	1.800	3.056	nan	2.274	3.024	11.999
11852	chr5	138052248	138054823	+	0	NA	5' UTR (NM_001310703, exon 1 of 3)	5' UTR (NM_001310703, exon 1 of 3)	340	NM_001310703	622486		NM_001310703	ENSMUSG00000075598	Smok3c	EG622486	sperm motility kinase 3C	protein-coding	3.663	1.353	0.698	3.932	2.837	1.560	4.857	3.161	3.552	4.586	7.142	5.341	4.089	6.557	4.198	3.847	1.818	4.358	0.940	1.230	0.523	0.624	nan	1.488	3.306
9695	chr3	108173744	108177197	+	0	NA	Intergenic	Intergenic	-10819	NM_001004293	229715	Mm.275752	NM_146137	ENSMUSG00000050947	Amigo1	Amigo|ali2	adhesion molecule with Ig like domain 1	protein-coding	3.741	0.510	0.371	1.686	1.978	1.224	6.418	1.532	2.544	2.722	7.364	1.453	5.310	4.290	nan	2.381	2.657	2.662	0.713	0.642	0.468	0.751	0.821	0.502	3.106
6849	chr17	73282693	73289738	+	0	NA	Intergenic	Intergenic	113081	NM_001033444	381122	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	2.347	6.621	2.725	2.754	1.423	0.769	nan	nan	nan	1.546	1.005	0.773	0.568	1.106	1.112	nan	0.978	1.539	2.881	2.505	2.063	5.488	1.862	1.187	1.486
3401	chr12	71718266	71720301	+	0	NA	Intergenic	Intergenic	-111785	NM_026102	208846	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	6.406	0.569	0.216	3.628	2.303	1.429	3.800	2.753	4.229	3.932	5.691	2.133	7.517	8.470	6.596	6.850	5.166	5.287	0.307	0.334	0.084	0.651	0.333	0.249	5.868
8657	chr2	128642775	128646244	+	0	NA	intron (NM_008569, intron 27 of 47)	intron (NM_008569, intron 27 of 47)	42886	NM_008569	17222	Mm.277408	NM_008569	ENSMUSG00000014355	Anapc1	2610021O03Rik|AI047775|AI853536|AW547281|Apc1|Mcpr|tsg24	anaphase promoting complex subunit 1	protein-coding	11.191	5.154	2.220	8.004	4.174	2.606	7.107	10.038	5.212	7.255	5.137	2.907	8.299	9.445	7.933	nan	8.163	7.278	nan	2.646	1.592	4.270	2.784	2.406	10.615
3139	chr11	121408783	121409681	+	0	NA	Intergenic	Intergenic	-12141	NM_181420	238024	Mm.117394	NM_181420	ENSMUSG00000039253	Fn3krp	FN3K-RP	fructosamine 3 kinase related protein	protein-coding	3.261	1.887	1.892	1.726	2.246	1.439	1.588	3.705	1.426	1.204	4.959	3.436	1.939	3.386	1.876	2.363	2.868	2.069	1.740	nan	1.832	1.613	1.902	0.966	1.835
2538	chr11	80524569	80531777	+	0	NA	intron (NM_177390, intron 21 of 21)	B3A|SINE|B2	-19067	NR_126552	77417	Mm.437510	NR_126552	ENSMUSG00000085078	C030013C21Rik	-	RIKEN cDNA C030013C21 gene	ncRNA	4.075	1.022	0.858	4.944	3.914	2.319	nan	4.033	3.382	2.711	1.267	2.169	2.103	2.219	nan	3.415	2.963	4.675	1.272	1.534	nan	1.103	1.524	0.848	1.733
1364	chr10	66517374	66521435	+	0	NA	Intergenic	MT2B|LTR|ERVL	374108	NR_131070	77198	Mm.107617	NR_131070		4930407I19Rik	-	RIKEN cDNA 4930407I19 gene	ncRNA	4.663	1.986	0.927	3.033	2.816	1.747	2.931	3.136	3.158	2.830	1.451	1.373	2.791	3.534	3.646	3.458	3.181	3.672	3.789	3.108	3.752	5.389	3.580	3.295	3.682
7074	chr18	23961123	23974784	+	0	NA	Intergenic	B1_Mur2|SINE|Alu	13265	NM_027007	69256	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	4.236	9.581	4.577	4.393	1.988	1.172	2.676	6.978	3.700	3.194	1.160	1.690	5.390	4.154	3.410	5.413	3.980	5.166	nan	1.625	1.032	nan	1.819	1.208	3.650
14564	chr8	109034288	109035692	+	0	NA	Intergenic	Intergenic	-40232	NR_126329	628686	Mm.203332	NR_126329	ENSMUSG00000097393	D030068K23Rik	-	RIKEN cDNA D030068K23 gene	ncRNA	1.744	1.447	0.048	1.416	0.712	0.298	2.037	1.985	1.383	1.392	6.271	1.574	1.913	3.450	3.997	3.897	1.370	2.645	1.643	1.112	1.331	nan	1.672	0.774	3.451
7866	chr19	53272535	53274471	+	0	NA	Intergenic	L1ME4b|LINE|L1	-18298	NR_036590	69319	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	2.766	5.581	1.534	4.482	2.280	1.023	1.074	0.847	1.965	2.356	1.434	0.942	0.644	1.361	1.532	2.051	1.926	3.274	0.600	1.735	1.101	1.018	1.934	2.049	1.778
13075	chr7	30031060	30050547	+	0	NA	intron (NM_011748, intron 5 of 5)	B4A|SINE|B4	10593	NM_011748	243906	Mm.347644	NM_011748	ENSMUSG00000053985	Zfp14	4732429I09Rik|Krox-9|Zfp-14|mKIAA1559	zinc finger protein 14	protein-coding	3.544	1.324	0.730	3.156	4.037	2.584	5.187	8.379	3.075	3.585	4.016	2.722	5.362	6.499	4.738	4.884	3.522	4.862	1.602	1.016	0.892	1.332	1.284	1.106	5.603
11207	chr5	44052270	44057533	+	0	NA	intron (NM_001163582, intron 3 of 21)	B4|SINE|B4	39867	NM_001163581	19126	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	1.774	1.292	0.511	2.696	1.001	0.388	1.500	1.468	1.550	1.965	1.293	0.948	1.445	1.935	2.744	2.821	nan	2.549	3.029	2.087	1.190	5.275	3.002	1.960	2.317
15691	chrX	17103635	17105358	+	0	NA	Intergenic	Lx|LINE|L1	-192722	NM_010883	17986	Mm.5014	NM_010883	ENSMUSG00000040138	Ndp	ND|Ndph	Norrie disease (pseudoglioma) (human)	protein-coding	3.315	0.555	0.314	3.737	3.119	2.671	0.678	3.533	3.311	3.617	1.114	1.003	2.016	3.844	1.893	2.910	1.837	3.840	0.808	0.699	0.582	0.727	0.378	0.204	1.792
8731	chr2	143670932	143680489	+	0	NA	intron (NM_008792, intron 2 of 11)	intron (NM_008792, intron 2 of 11)	113476	NR_040625	378775	Mm.441313	NR_040625	ENSMUSG00000087115	Pcsk2os2	9430032N09Rik|Gm12360|OTTMUSG00000006467	proprotein convertase subtilisin/kexin type 2, opposite strand 2	ncRNA	5.420	0.985	0.562	3.448	3.218	1.776	2.698	3.167	5.413	5.530	2.412	2.356	1.930	2.951	4.495	4.377	2.793	5.575	nan	0.745	0.588	1.081	1.030	0.622	6.580
7378	chr18	74514539	74515650	+	0	NA	intron (NR_045368, intron 3 of 3)	B3|SINE|B2	16030	NR_045368	73606	Mm.444734	NR_045368		1700120E14Rik	-	RIKEN cDNA 1700120E14 gene	ncRNA	3.201	nan	0.356	0.644	7.785	6.194	1.928	1.460	1.753	3.150	2.237	1.326	2.898	3.112	1.234	1.762	1.787	2.267	0.628	nan	0.924	1.405	0.772	0.786	1.293
978	chr1	184338178	184345428	+	0	NA	Intergenic	Intergenic	215888	NR_040472	73590	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	6.100	3.613	1.205	4.742	2.496	1.610	3.525	3.806	3.262	5.276	1.848	2.284	5.132	4.684	4.606	7.999	5.101	6.663	2.327	1.195	1.211	3.058	1.687	1.648	6.250
4774	chr14	65715633	65717588	+	0	NA	intron (NM_028903, intron 3 of 8)	ORR1F|LTR|ERVL-MaLR	50207	NM_001168318	71145	Mm.83840	NM_028903	ENSMUSG00000022032	Scara5	4932433F15Rik|4933425F03Rik|AV278087|Tesr	scavenger receptor class A, member 5	protein-coding	9.046	13.257	4.583	10.188	4.825	2.902	6.310	7.113	5.652	12.336	6.384	4.300	4.989	7.741	7.104	9.362	3.706	8.908	6.534	nan	4.332	6.211	4.534	6.051	14.851
15225	chr9	66358075	66368635	+	0	NA	intron (NM_145617, intron 1 of 77)	intron (NM_145617, intron 1 of 77)	12905	NM_145617	235439	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	2.779	3.449	1.131	3.101	0.824	0.465	2.882	3.124	2.897	3.379	2.082	1.264	4.114	4.119	5.025	5.105	2.165	4.093	nan	1.912	1.311	4.658	1.324	1.112	6.397
14514	chr8	106897545	106900884	+	0	NA	intron (NM_011574, intron 4 of 16)	MTD|LTR|ERVL-MaLR	5574	NM_011574	21771	Mm.10665	NM_011574	ENSMUSG00000041438	Cirh1a	Cirhin|Naic|Teg-292|Tex292|Utp4	cirrhosis, autosomal recessive 1A (human)	protein-coding	3.079	1.658	0.839	3.115	2.811	1.759	5.030	10.737	1.855	1.795	1.404	1.726	4.754	5.816	5.494	4.623	5.367	3.933	3.699	4.051	2.272	5.411	3.510	3.400	3.061
3752	chr12	113163668	113167094	+	0	NA	TTS (NM_134041)	TTS (NM_134041)	8960	NM_134041	104732	Mm.87616	NM_134041	ENSMUSG00000037466	4930427A07Rik	AA536649|mFLJ00116	RIKEN cDNA 4930427A07 gene	protein-coding	3.650	1.328	0.374	1.933	1.052	0.528	2.740	1.967	1.794	2.103	2.198	0.670	2.885	6.495	4.491	4.844	2.563	4.011	0.965	0.743	0.624	1.759	0.610	0.406	9.749
2144	chr11	49658716	49661832	+	0	NA	Intergenic	Intergenic	-3321	NM_054037	68662	Mm.22802	NM_054037	ENSMUSG00000064057	Scgb3a1	HIN-1|LuLeu2|Pnsp2|UGRP2|Utgrp2	secretoglobin, family 3A, member 1	protein-coding	6.289	6.902	2.354	6.196	2.798	1.668	5.445	8.150	3.438	7.085	3.805	2.549	4.226	6.484	5.501	7.781	4.325	5.505	nan	3.139	2.165	nan	nan	2.771	9.146
14231	chr8	49005039	49006188	+	0	NA	Intergenic	B4|SINE|B4	-330923	NM_011857	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding	2.172	0.885	0.619	1.027	1.240	0.555	1.721	1.011	2.492	1.991	1.246	1.230	4.731	3.327	2.053	4.442	4.745	2.802	0.303	0.510	1.085	0.512	0.418	0.398	5.030
10421	chr4	117665588	117667089	+	0	NA	intron (NM_001285901, intron 7 of 7)	intron (NM_001285901, intron 7 of 7)	15887	NM_023178	66233	Mm.29142	NM_023178	ENSMUSG00000009640	Dmap1	1500016M21Rik|DNMAP1|DNMTAP1|Dmtap1|mKIAA1425	DNA methyltransferase 1-associated protein 1	protein-coding	1.807	0.642	0.572	2.891	2.228	0.945	1.816	1.341	1.978	2.705	1.275	2.455	1.991	4.241	1.949	2.721	1.090	2.629	1.984	0.711	0.571	1.728	1.617	1.411	2.795
378	chr1	87695847	87698288	+	0	NA	intron (NM_010566, intron 11 of 26)	L2a|LINE|L2	-58944	NM_029846	77040	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	5.024	1.044	0.922	2.997	6.400	3.532	2.813	4.282	3.905	3.518	2.317	2.044	4.090	4.161	3.244	4.960	4.319	5.469	0.843	1.004	1.053	nan	1.053	0.682	2.274
889	chr1	173397787	173400436	+	0	NA	Intergenic	Intergenic	-21493	NM_001013779	383619	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	4.534	0.738	0.624	2.109	5.966	4.223	3.049	3.336	3.302	2.791	2.491	2.033	4.260	nan	4.392	5.864	3.351	3.622	1.123	1.257	1.362	1.262	0.993	0.859	4.163
4926	chr14	102191914	102198895	+	0	NA	Intergenic	MLT1A|LTR|ERVL-MaLR	354781	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	5.640	nan	0.553	4.051	5.923	3.575	6.496	7.113	7.520	7.052	6.440	3.819	8.070	10.302	7.341	7.148	3.807	8.028	0.945	0.875	0.458	0.657	1.320	0.919	nan
12260	chr6	55153060	55154206	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	-20617	NM_001288618	12922	Mm.236081	NM_009953	ENSMUSG00000003476	Crhr2	CRF-R2|CRFR2alpha|CRFR2beta|Crfr2	corticotropin releasing hormone receptor 2	protein-coding	6.630	2.065	0.694	7.703	2.027	0.666	5.581	5.220	4.315	5.006	1.746	1.663	4.466	6.317	6.832	10.075	3.830	6.813	4.067	1.342	0.991	5.365	1.571	1.550	9.227
3390	chr12	70984483	70987275	+	0	NA	intron (NM_001310596, intron 5 of 10)	intron (NM_001310596, intron 5 of 10)	11256	NM_011184	19167	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	7.139	0.957	1.422	1.975	3.984	2.665	4.508	4.681	2.907	3.224	4.477	3.163	5.289	4.626	4.479	5.382	6.459	3.859	0.636	0.866	0.871	0.578	0.912	0.739	4.284
5135	chr15	38210837	38214388	+	0	NA	Intergenic	RLTR23|LTR|ERV1	-6591	NM_008757	18285	Mm.252830	NM_008757	ENSMUSG00000061923	Odf1	-	outer dense fiber of sperm tails 1	protein-coding	2.056	3.867	1.895	1.504	0.714	0.473	1.761	3.856	1.312	1.095	0.985	0.589	1.872	1.375	1.867	1.592	1.663	1.633	4.542	2.562	1.762	nan	3.822	2.877	nan
6121	chr16	52331578	52337855	+	0	NA	intron (NM_009655, intron 1 of 15)	intron (NM_009655, intron 1 of 15)	118365	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	8.017	0.521	0.395	4.525	6.751	3.219	7.394	8.615	8.216	8.977	3.324	4.868	11.068	9.632	8.474	10.110	6.786	9.695	1.181	1.378	0.879	1.600	1.494	0.884	6.526
11068	chr5	23898456	23901146	+	0	NA	intron (NR_037304, intron 2 of 4)	L1M5|LINE|L1	47568	NR_028536	100217436		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	4.750	4.747	3.621	4.067	3.668	1.140	4.105	5.746	3.760	4.308	4.476	2.525	4.150	6.349	6.376	5.266	3.393	4.252	4.415	2.492	1.360	4.383	4.407	2.528	5.132
10583	chr4	129848701	129856045	+	0	NA	Intergenic	B2_Mm1a|SINE|B2	31665	NM_001164745	19244	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	7.298	1.120	0.531	9.215	5.766	3.125	5.689	9.717	4.569	8.359	5.852	2.591	5.972	11.411	nan	8.372	3.795	8.638	1.616	1.146	1.039	2.303	1.489	1.073	10.339
3972	chr13	36773901	36776288	+	0	NA	Intergenic	MTC|LTR|ERVL-MaLR	-40617	NM_153529	68404	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	1.262	nan	0.379	1.341	0.780	0.449	nan	nan	nan	1.343	0.526	0.526	1.549	2.204	1.914	4.332	1.883	2.132	0.582	0.531	0.159	0.512	0.368	0.393	1.842
684	chr1	137666166	137669280	+	0	NA	Intergenic	Intergenic	-298732	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	3.953	1.214	0.533	2.408	1.463	0.589	1.287	1.908	2.090	1.867	6.656	3.708	1.396	2.187	1.415	nan	1.093	2.543	0.979	0.998	0.512	1.468	0.784	0.369	nan
9624	chr3	102942573	102945277	+	0	NA	intron (NM_198658, intron 10 of 10)	intron (NM_198658, intron 10 of 10)	-7825	NM_011516	20957	Mm.243849	NM_011516	ENSMUSG00000027855	Sycp1	SCP1	synaptonemal complex protein 1	protein-coding	2.512	0.761	0.882	3.366	1.345	0.898	0.660	0.688	1.929	1.834	8.081	3.583	0.554	1.048	1.132	nan	0.947	2.350	0.719	0.846	1.373	1.083	0.739	0.682	1.582
6041	chr16	34811143	34814183	+	0	NA	intron (NM_139300, intron 1 of 31)	intron (NM_139300, intron 1 of 31)	27713	NM_139300	107589	Mm.33360	NM_139300	ENSMUSG00000022836	Mylk	9530072E15Rik|A930019C19Rik|AW489456|KRP|MLCK108|MLCK210|Mlck|nmMlck|smMLCK	myosin, light polypeptide kinase	protein-coding	6.136	0.586	0.425	1.662	4.447	2.743	6.918	6.072	4.141	4.272	0.717	1.776	7.546	4.920	4.569	nan	4.566	5.244	0.837	0.805	0.721	1.004	0.751	0.505	nan
7168	chr18	37981680	37987787	+	0	NA	intron (NM_001205336, intron 17 of 32)	intron (NM_001205336, intron 17 of 32)	6212	NR_105946	102466913		NR_105946	ENSMUSG00000098297	Mir6980	Gm27969|mmu-mir-6980	microRNA 6980	ncRNA	10.112	2.022	1.061	5.572	3.511	1.856	8.390	9.444	3.682	5.012	2.993	2.525	7.764	8.837	6.524	nan	6.591	6.946	2.823	3.093	1.846	3.822	3.792	2.431	9.577
13520	chr7	108502479	108506413	+	0	NA	Intergenic	L1Md_A|LINE|L1	19502	NM_146739	258734	Mm.377664	NM_146739	ENSMUSG00000058014	Olfr502	MOR204-8	olfactory receptor 502	protein-coding	1.467	10.371	5.685	2.492	2.369	1.412	1.419	3.992	0.944	1.717	1.236	1.496	0.842	nan	1.683	nan	1.271	nan	nan	1.278	1.000	0.851	0.704	0.457	1.603
8223	chr2	44381652	44382652	+	0	NA	intron (NM_001301831, intron 13 of 14)	intron (NM_001301831, intron 13 of 14)	-316828	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	4.326	1.238	0.263	2.112	1.080	0.125	4.130	5.344	1.683	1.853	3.301	1.554	4.132	3.392	5.109	3.859	5.671	2.907	1.204	1.139	0.543	1.140	1.521	1.296	3.317
1924	chr11	4967272	4969407	+	0	NA	intron (NM_001243043, intron 1 of 22)	intron (NM_001243043, intron 1 of 22)	-18485	NM_001243044	11764	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	2.579	0.932	0.568	2.826	2.868	2.255	2.625	2.628	2.445	3.230	0.938	0.571	2.618	4.905	2.244	3.554	3.012	3.393	0.556	nan	0.538	0.768	0.653	0.698	1.958
5032	chr15	8625713	8627097	+	0	NA	Intergenic	Intergenic	84402	NM_148938	20512	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	2.726	9.643	7.408	2.024	2.429	1.237	3.698	2.132	1.619	1.166	4.653	0.437	3.811	3.440	3.215	2.707	4.910	1.874	0.389	0.800	0.354	0.281	0.189	0.432	2.130
12153	chr6	34812104	34820726	+	0	NA	intron (NM_178630, intron 11 of 18)	L1M3|LINE|L1	35983	NM_001289656	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	11.784	7.873	2.972	9.602	6.318	2.546	8.558	9.243	6.526	8.122	9.728	3.766	8.594	10.831	8.549	11.337	7.644	9.474	nan	2.394	1.682	nan	nan	1.297	nan
3042	chr11	117668473	117673127	+	0	NA	intron (NM_198022, intron 1 of 21)	PB1D10|SINE|Alu	16511	NM_198022	217351	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	4.643	16.134	6.581	5.986	2.546	1.583	nan	nan	2.665	nan	3.913	2.735	4.267	6.289	5.429	6.740	3.322	nan	2.747	nan	1.612	3.513	2.112	1.667	6.808
5689	chr15	101051036	101052763	+	0	NA	3' UTR (NM_001214911, exon 1 of 1)	3' UTR (NM_001214911, exon 1 of 1)	2500	NM_001214911	668225	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	1.835	1.506	0.528	2.478	1.968	1.068	3.505	4.469	1.578	1.605	1.303	0.871	3.461	4.161	3.281	3.344	3.232	2.907	3.551	1.140	0.498	1.970	2.851	2.020	3.332
15400	chr9	96612058	96631231	+	0	NA	intron (NM_053268, intron 1 of 23)	B1_Mus1|SINE|Alu	9859	NM_053268	114713	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	6.750	12.434	5.633	5.409	3.324	1.854	5.149	5.470	4.913	6.401	3.863	2.524	4.957	6.937	6.732	8.814	5.252	6.569	6.592	2.021	1.597	3.616	3.310	2.852	9.581
15254	chr9	69840285	69841169	+	0	NA	Intergenic	B3A|SINE|B2	79581	NR_040765	319970	Mm.186434	NR_040765	ENSMUSG00000097623	B230323A14Rik	-	RIKEN cDNA B230323A14 gene	ncRNA	5.989	3.870	1.681	4.458	1.396	0.725	2.943	4.058	3.695	3.357	2.943	2.555	2.893	3.370	3.696	3.454	2.191	4.542	1.499	1.017	0.328	1.255	0.881	0.217	4.979
1214	chr10	39136984	39139166	+	0	NA	intron (NM_028006, intron 4 of 11)	intron (NM_028006, intron 4 of 11)	4052	NM_028006	71924	Mm.297956	NM_028006	ENSMUSG00000019845	Tube1	2310061K05Rik|AI551343|Tube	epsilon-tubulin 1	protein-coding	4.349	3.530	1.446	4.803	1.608	0.936	1.250	2.639	2.776	2.182	1.134	1.003	1.461	1.902	2.251	2.817	1.903	2.853	1.196	0.521	0.666	1.281	0.493	0.382	2.815
15669	chrX	7815159	7817001	+	0	NA	intron (NM_207670, intron 21 of 24)	intron (NM_207670, intron 21 of 24)	-7679	NM_008423	16506	Mm.335968	NM_008423	ENSMUSG00000009731	Kcnd1	1110037K09Rik|Kca2-1|Kv4.1|Shal|Shal1|mShal1	potassium voltage-gated channel, Shal-related family, member 1	protein-coding	2.654	0.461	0.143	1.076	2.352	2.232	3.176	2.273	2.479	2.519	3.055	1.670	3.248	4.218	1.654	2.731	2.109	1.456	0.510	0.702	0.732	0.318	0.264	0.364	2.204
10712	chr4	135504960	135506408	+	0	NA	intron (NM_030189, intron 1 of 8)	intron (NM_030189, intron 1 of 8)	9697	NM_030189	78806	Mm.374844	NM_030189	ENSMUSG00000028801	Stpg1	4930403G18Rik|4930555I21Rik|Mapo2	sperm tail PG rich repeat containing 1	protein-coding	4.663	1.055	1.387	3.790	4.965	4.126	3.628	6.970	2.790	3.341	1.486	1.854	2.143	3.484	2.277	2.358	2.023	2.263	2.286	2.081	3.241	1.524	nan	3.783	3.218
5510	chr15	83401351	83407198	+	0	NA	intron (NM_001159509, intron 1 of 10)	intron (NM_001159509, intron 1 of 10)	28576	NM_011862	23970	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	nan	0.888	0.300	nan	1.620	0.991	4.611	7.243	nan	3.891	2.742	1.342	6.526	5.768	nan	nan	nan	nan	nan	0.302	0.482	nan	0.666	0.558	nan
12088	chr6	23078774	23082694	+	0	NA	intron (NM_013930, intron 18 of 23)	B1F|SINE|Alu	52252	NM_013930	30956	Mm.18651	NM_013930	ENSMUSG00000029695	Aass	LKR|LKR/SDH|LOR|LOR/SDH|Lorsdh|SDH	aminoadipate-semialdehyde synthase	protein-coding	3.640	0.518	0.466	1.119	0.488	0.341	1.887	3.383	1.498	1.950	0.682	0.378	3.147	2.526	3.099	nan	6.060	nan	nan	0.623	0.653	0.519	0.557	0.218	3.122
1660	chr10	95793388	95797379	+	0	NA	Intergenic	Intergenic	-145280	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	5.759	9.221	3.994	4.129	2.104	0.799	1.438	1.695	3.917	3.352	nan	1.564	2.088	2.917	2.916	3.626	2.235	4.311	nan	1.241	0.656	nan	1.101	0.499	3.991
15787	chrX	99839064	99841026	+	0	NA	intron (NM_001081283, intron 1 of 2)	intron (NM_001081283, intron 1 of 2)	18976	NM_001081283	620592	Mm.388976	NM_001081283	ENSMUSG00000071719	Tmem28	EG620592|Fam155b|Tnen28	transmembrane protein 28	protein-coding	5.002	6.464	2.376	5.176	3.521	2.188	1.870	3.170	3.836	5.627	1.547	1.555	3.824	6.306	4.546	4.991	3.016	4.540	2.423	2.021	1.678	2.718	2.366	2.003	6.738
7082	chr18	24363379	24367070	+	0	NA	Intergenic	Intergenic	63946	NR_029573	387182		NR_029573	ENSMUSG00000065532	Mir187	Mirn187|mir-187|mmu-mir-187	microRNA 187	ncRNA	6.828	9.202	2.972	7.918	3.402	2.403	5.172	6.006	5.407	12.386	4.337	3.967	5.720	5.721	7.112	nan	4.079	8.735	nan	1.700	2.856	nan	1.958	3.812	12.580
9339	chr3	59017131	59018399	+	0	NA	intron (NM_177855, intron 1 of 43)	C-rich|Low_complexity|Low_complexity	10787	NM_177855	329650	Mm.240059	NM_177855	ENSMUSG00000056476	Med12l	A130035F20|A630079M02|AU044581|TRALPUSH	mediator complex subunit 12-like	protein-coding	3.042	1.258	1.575	nan	1.448	0.852	3.511	0.817	2.616	3.077	0.800	0.607	4.308	3.761	nan	1.714	0.746	4.190	0.241	0.967	0.309	0.493	0.542	0.172	1.295
6177	chr16	87611059	87613508	+	0	NA	Intergenic	Intergenic	58953	NM_144854	224419	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	4.857	nan	0.288	3.485	3.116	1.854	3.819	10.676	3.474	3.195	1.532	0.953	7.736	6.341	5.735	6.497	3.963	5.749	0.645	0.367	0.276	nan	0.507	0.337	3.804
15345	chr9	79606198	79616558	+	0	NA	intron (NM_001290308, intron 58 of 65)	intron (NM_001290308, intron 58 of 65)	-92076	NR_045336	100038575	Mm.367838	NR_045336	ENSMUSG00000111765	Gm10635	ENSMUSG00000074174	predicted gene 10635	ncRNA	7.092	2.016	1.160	3.325	2.860	1.575	4.920	4.641	6.561	7.862	1.640	1.368	8.716	7.397	7.568	7.883	6.485	8.394	1.517	nan	0.706	1.235	1.154	0.673	7.678
13490	chr7	106701169	106703172	+	0	NA	Intergenic	Lx|LINE|L1	-12441	NM_146452	258444	Mm.271372	NM_146452	ENSMUSG00000064223	Olfr694	MOR283-9	olfactory receptor 694	protein-coding	3.336	1.798	0.555	7.616	1.655	1.115	2.025	3.075	2.897	2.895	1.135	1.884	3.508	2.646	2.959	5.103	2.428	6.188	nan	0.863	1.064	1.221	0.726	0.481	4.178
3887	chr13	23852266	23855955	+	0	NA	intron (NM_134069, intron 6 of 12)	L1MD|LINE|L1	14676	NM_134069	105355	Mm.27038	NM_134069	ENSMUSG00000036083	Slc17a3	AW261723|Npt4	solute carrier family 17 (sodium phosphate), member 3	protein-coding	4.158	8.819	2.776	4.902	1.466	0.492	1.933	3.362	2.998	3.408	3.522	1.485	3.327	4.643	5.346	5.294	2.626	4.994	3.632	1.318	0.633	5.523	0.791	0.939	5.766
13550	chr7	114807524	114811010	+	0	NA	intron (NM_173767, intron 6 of 12)	Lx8|LINE|L1	63501	NM_173767	233752	Mm.83037	NM_173767	ENSMUSG00000048782	Insc	3830422K02Rik|C730020D23	inscuteable homolog (Drosophila)	protein-coding	13.047	2.191	1.088	8.740	8.329	4.575	15.411	19.244	8.607	12.570	5.789	4.620	13.972	18.242	13.381	14.151	11.013	11.964	4.420	4.062	2.422	2.838	8.554	4.796	17.748
9154	chr3	19205930	19212767	+	0	NA	intron (NR_045575, intron 4 of 8)	RSINE1|SINE|B4	21127	NR_045575	67472	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	7.245	8.927	3.276	6.981	4.865	2.968	8.049	4.628	6.738	12.282	8.241	3.494	8.959	10.332	6.327	6.198	5.648	11.123	2.851	2.175	1.954	2.928	2.282	2.740	8.670
5875	chr16	20810052	20811069	+	0	NA	Intergenic	MLT1F|LTR|ERVL-MaLR	-76049	NM_009379	21832	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	4.431	1.169	1.019	1.170	4.129	2.795	4.739	5.796	4.095	3.359	2.633	2.446	3.715	3.383	2.054	2.513	3.180	3.250	0.557	0.776	0.489	0.390	0.438	0.596	2.160
13204	chr7	53764808	53767290	+	0	NA	Intergenic	Lx5|LINE|L1	125840	NR_105746	102466619		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	nan	1.461	0.549	0.986	0.082	0.049	0.470	0.371	0.474	0.537	0.302	0.146	0.298	0.222	0.680	nan	0.369	0.956	6.520	3.881	1.976	7.626	4.282	2.036	1.113
11312	chr5	66933092	66936149	+	0	NA	intron (NM_001001980, intron 3 of 25)	intron (NM_001001980, intron 3 of 25)	-33796	NM_001256122	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding	6.092	1.653	0.976	5.025	4.640	1.931	4.415	4.092	5.052	6.251	5.721	1.761	4.641	7.008	4.142	6.385	3.498	6.260	1.296	1.325	0.325	nan	0.957	0.522	4.075
5146	chr15	38492242	38503560	+	0	NA	intron (NR_125913, intron 5 of 11)	B1_Mus2|SINE|Alu	-7354	NR_105916	102465574		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	7.737	1.522	0.954	2.767	3.716	1.957	10.077	12.316	5.969	7.632	7.061	4.516	10.479	9.000	7.293	7.385	8.547	5.894	1.869	1.345	1.009	nan	1.166	0.853	nan
992	chr1	185889475	185891565	+	0	NA	intron (NR_030555, intron 5 of 6)	intron (NR_030555, intron 5 of 6)	226790	NM_146106	226791	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	3.707	3.330	1.479	3.784	1.801	0.615	0.868	1.612	2.339	2.288	1.651	2.515	1.025	1.881	1.607	nan	0.958	3.636	3.131	3.322	1.397	7.326	2.376	1.057	3.302
9447	chr3	88387988	88399831	+	0	NA	TTS (NM_025928)	TTS (NM_025928)	-9443	NM_007541	12096	Mm.389459	NM_007541	ENSMUSG00000074483	Bglap	BGP|Bglap1|OC|OG1|mOC-A	bone gamma carboxyglutamate protein	protein-coding	6.184	3.174	1.382	5.111	5.686	4.560	9.013	5.086	5.007	5.432	3.208	1.548	8.715	9.649	6.736	nan	6.158	7.987	nan	0.806	0.823	0.798	0.727	0.905	9.451
12859	chr6	146683683	146685031	+	0	NA	Intergenic	Intergenic	27139	NR_046277	74925	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	2.974	1.160	0.285	nan	1.986	1.453	1.183	1.833	3.177	4.429	1.026	1.945	2.325	4.387	1.471	2.016	1.107	4.365	2.236	nan	0.319	1.833	1.524	0.377	1.706
9355	chr3	62250229	62251951	+	0	NA	Intergenic	Lx3C|LINE|L1	-87687	NM_001081295	622434	Mm.153974	NM_001081295	ENSMUSG00000036885	Arhgef26	4631416L12Rik|8430436L14Rik|AI303572|AW491953|SGEF	Rho guanine nucleotide exchange factor (GEF) 26	protein-coding	2.952	0.684	0.077	4.000	1.340	0.573	1.849	1.137	2.010	1.484	0.473	0.679	1.442	1.786	nan	2.128	1.134	4.200	0.648	0.871	0.268	1.135	0.502	0.281	1.810
13639	chr7	120135789	120137793	+	0	NA	intron (NM_011775, intron 10 of 17)	intron (NM_011775, intron 10 of 17)	8500	NM_011775	22787	Mm.6510	NM_011775	ENSMUSG00000030911	Zp2	Zp-2	zona pellucida glycoprotein 2	protein-coding	3.717	0.531	0.217	2.056	1.891	1.016	5.953	8.006	3.022	3.268	4.784	1.739	4.830	6.040	7.190	6.885	4.570	4.126	0.661	0.675	0.468	0.873	0.764	1.026	6.796
10476	chr4	120867252	120869521	+	0	NA	Intergenic	MER5A1|DNA|hAT-Charlie	-9483	NM_182929	242662	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	2.190	6.289	5.726	1.389	2.325	2.647	0.821	0.920	1.075	1.214	3.165	2.331	0.606	1.111	0.857	nan	1.269	1.274	3.062	2.318	2.003	1.072	2.970	2.721	0.954
9783	chr3	122874873	122878293	+	0	NA	Intergenic	Intergenic	-18489	NM_007980	14079	Mm.28398	NM_007980	ENSMUSG00000023057	Fabp2	Fabpi|I-FABP	fatty acid binding protein 2, intestinal	protein-coding	0.796	13.043	7.451	1.000	0.334	0.178	0.532	0.460	0.503	nan	0.339	0.390	0.312	0.459	0.538	nan	0.664	0.574	0.432	0.697	0.396	0.286	nan	0.339	nan
1954	chr11	6480025	6489274	+	0	NA	Intergenic	Intergenic	-8573	NM_011221	19291	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	nan	9.701	5.174	1.164	0.982	0.460	0.702	0.725	1.234	1.142	0.721	0.842	0.493	0.668	1.224	1.245	0.962	1.330	3.495	nan	2.036	3.598	0.662	0.575	1.126
15770	chrX	93301338	93304552	+	0	NA	Intergenic	Intergenic	16438	NM_001305940	11878	Mm.275547	NM_007492	ENSMUSG00000035277	Arx	-	aristaless related homeobox	protein-coding	3.675	1.008	0.824	3.443	3.430	1.904	2.391	3.013	3.212	2.853	1.769	1.456	2.798	3.600	2.498	3.093	3.065	3.640	0.818	0.791	0.427	0.722	0.253	0.117	2.410
9343	chr3	60148705	60152155	+	0	NA	Intergenic	L1_Mus3|LINE|L1	68561	NM_032400	84112	Mm.125110	NM_032400	ENSMUSG00000027762	Sucnr1	Gpr91	succinate receptor 1	protein-coding	5.847	0.767	0.794	3.254	6.265	3.644	6.183	4.782	6.457	5.252	4.662	2.278	7.431	7.499	nan	4.140	5.645	7.603	1.114	1.108	0.504	0.628	0.965	0.755	2.980
2843	chr11	102976100	102980197	+	0	NA	Intergenic	B1_Mur4|SINE|Alu	-13994	NR_037963	69739	Mm.276539	NR_037963	ENSMUSG00000085338	2410004I01Rik	-	RIKEN cDNA 2410004I01 gene	ncRNA	7.770	10.650	4.218	9.304	3.941	1.596	5.949	7.520	6.406	8.030	7.129	3.872	7.098	9.172	9.357	9.299	7.158	8.542	6.106	nan	2.842	6.169	nan	nan	10.649
7127	chr18	35331043	35332572	+	0	NA	intron (NM_030749, intron 5 of 9)	L1MD2|LINE|L1	-116783	NM_178005	107065	Mm.39900	NM_178005	ENSMUSG00000071862	Lrrtm2	AI851755|BB129880|C630011A14Rik|mKIAA0416	leucine rich repeat transmembrane neuronal 2	protein-coding	3.804	0.329	0.406	1.471	2.876	2.167	3.589	2.574	2.387	2.085	1.178	0.936	3.494	3.100	1.292	1.947	3.178	1.999	0.757	0.983	1.505	0.322	1.426	1.618	1.735
12190	chr6	39666175	39667759	+	0	NA	intron (NM_139294, intron 4 of 21)	B4A|SINE|B4	58496	NM_139294	109880	Mm.245513	NM_139294	ENSMUSG00000002413	Braf	9930012E13Rik|AA120551|AA387315|AA473386|B-raf|Braf-2|Braf2|C230098H17|C87398|D6Ertd631e	Braf transforming gene	protein-coding	4.945	0.788	0.728	2.589	3.559	2.225	3.488	1.594	3.944	3.643	1.818	0.898	4.648	5.111	3.300	5.261	4.883	5.858	nan	1.200	0.937	nan	nan	0.568	3.432
13268	chr7	73323408	73329430	+	0	NA	intron (NR_040325, intron 1 of 1)	intron (NR_040325, intron 1 of 1)	16039	NR_105062	100505025	Mm.445959	NR_105062	ENSMUSG00000108530	LOC100505025	-	uncharacterized LOC100505025	ncRNA	2.761	3.106	1.292	nan	3.258	2.113	3.684	3.171	4.117	5.605	1.536	0.812	3.504	4.706	3.558	4.895	2.553	4.700	0.831	0.669	0.647	0.878	0.522	0.290	5.232
9573	chr3	97461395	97463227	+	0	NA	Intergenic	(CACAG)n|Simple_repeat|Simple_repeat	-51132	NM_146275	258272	Mm.377406	NM_146275	ENSMUSG00000051392	Olfr1402	MOR217-1	olfactory receptor 1402	protein-coding	4.677	5.136	1.288	6.167	1.401	1.506	5.326	4.192	2.922	5.715	3.394	2.210	5.179	5.508	5.975	6.728	3.968	5.035	3.138	1.511	1.750	3.595	2.180	2.219	8.516
3391	chr12	70991218	70994546	+	0	NA	intron (NR_045055, intron 3 of 3)	intron (NR_045055, intron 3 of 3)	18259	NM_011184	19167	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	10.629	5.548	1.565	7.186	3.916	2.430	6.159	5.805	4.446	8.959	5.872	4.109	6.380	6.328	6.623	7.979	7.902	7.648	4.964	4.014	2.452	4.134	4.307	3.881	12.726
5418	chr15	78938150	78940509	+	0	NA	intron (NM_133800, intron 4 of 5)	ID_B1|SINE|B4	4396	NM_133800	97961	Mm.157216	NM_133800	ENSMUSG00000033099	Nol12	C78541|Nop25	nucleolar protein 12	protein-coding	7.720	9.680	1.932	8.345	4.682	4.663	8.720	12.313	3.777	10.982	8.380	3.811	6.604	8.427	7.309	7.308	6.649	6.341	4.219	2.775	2.549	nan	2.392	3.545	11.150
2973	chr11	115019295	115026420	+	0	NA	intron (NM_001101657, intron 2 of 3)	intron (NM_001101657, intron 2 of 3)	4076	NM_001101657	100043125		NM_001101657	ENSMUSG00000089722	Cd300ld5	Gm11711|OTTMUSG00000003606	CD300 molecule like family member D5	protein-coding	5.554	8.205	2.284	5.176	2.174	1.051	nan	nan	2.682	nan	3.978	2.412	4.056	6.337	5.551	6.514	3.900	5.140	1.446	nan	1.147	1.866	1.372	1.002	6.815
14089	chr8	26148583	26150708	+	0	NA	Intergenic	ID_B1|SINE|B4	-8524	NM_199042	73754	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	3.694	3.137	1.119	3.658	1.669	0.925	0.690	2.054	3.337	4.981	3.918	2.108	1.744	2.745	4.002	3.663	1.329	5.575	0.662	0.912	0.520	nan	0.715	0.375	6.667
2999	chr11	116077262	116081992	+	0	NA	intron (NM_001347642, intron 6 of 6)	intron (NM_001347642, intron 6 of 6)	-1666	NM_001009573	70450	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	6.064	1.914	0.468	8.386	4.673	2.612	6.373	nan	6.239	8.087	5.307	4.285	7.610	8.495	9.616	10.298	4.866	8.666	7.720	nan	3.619	8.920	6.650	4.475	9.054
4602	chr14	35321076	35322881	+	0	NA	intron (NM_008166, intron 7 of 15)	(TG)n|Simple_repeat|Simple_repeat	427369	NR_029774	723847		NR_029774	ENSMUSG00000065481	Mir346	Mirn346|mir-346|mmu-mir-346	microRNA 346	ncRNA	3.924	1.360	1.098	3.273	3.037	2.552	3.643	3.868	2.699	2.965	2.001	1.258	4.048	5.147	3.506	5.136	3.440	4.175	3.523	2.081	2.644	3.733	2.215	2.970	4.245
14715	chr8	124442372	124446746	+	0	NA	Intergenic	Intergenic	-10623	NM_171824	209966	Mm.234233	NM_171824	ENSMUSG00000050751	Pgbd5	2900019M05Rik|AI854313	piggyBac transposable element derived 5	protein-coding	4.257	nan	0.410	nan	2.202	1.875	4.372	4.511	1.823	2.531	1.166	0.623	2.106	6.566	nan	3.825	4.806	nan	nan	3.304	3.553	nan	3.957	nan	5.540
9295	chr3	51891645	51893545	+	0	NA	intron (NM_001004176, intron 1 of 4)	B4A|SINE|B4	212411	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding	10.046	2.028	1.326	6.897	7.548	3.966	13.618	8.627	7.519	7.359	7.084	5.842	9.004	11.885	9.225	10.150	6.884	9.911	8.045	5.220	2.993	6.861	7.601	5.232	10.919
14148	chr8	35907781	35910082	+	0	NA	Intergenic	Intergenic	-25974	NR_046181	330737	Mm.381743	NR_046181	ENSMUSG00000109761	5430403N17Rik	5430403N17	RIKEN cDNA 5430403N17 gene	ncRNA	4.626	0.950	0.769	1.972	2.170	0.679	3.655	7.387	3.274	3.242	2.519	2.755	5.715	5.584	6.182	6.922	4.454	4.890	0.753	0.562	0.160	0.717	0.571	0.329	3.701
11309	chr5	66783718	66785175	+	0	NA	intron (NM_001001980, intron 1 of 25)	intron (NM_001001980, intron 1 of 25)	38606	NM_001001980	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding	0.553	0.841	0.189	0.673	0.206	0.170	4.347	4.196	1.695	1.776	0.364	0.345	4.383	4.694	3.953	5.192	3.102	2.202	0.295	0.246		nan	0.157	0.139	0.822
8447	chr2	91785028	91806907	+	0	NA	intron (NM_172669, intron 7 of 17)	Charlie1|DNA|hAT-Charlie	65829	NM_001080754	228361	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	5.290	5.969	2.024	4.851	2.044	1.363	3.855	4.958	2.750	3.547	2.812	1.651	4.460	3.780	4.092	5.744	4.416	4.885	5.387	3.644	3.336	3.761	4.770	4.312	7.604
14540	chr8	108224297	108225900	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	359579	NR_077224	109215	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	6.338	9.677	2.486	8.916	2.654	1.044	4.446	7.601	3.944	5.039	3.537	1.575	6.225	6.694	8.429	12.142	5.965	6.617	5.421	4.249	2.241	11.041	4.708	4.459	11.998
13493	chr7	107094547	107096158	+	0	NA	Intergenic	Intergenic	-2115	NM_020598	18314	Mm.103814	NM_020598	ENSMUSG00000073897	Olfr17	MOR263-5|P2	olfactory receptor 17	protein-coding	4.210	1.453	0.729	2.624	1.420	0.316	3.161	3.932	2.820	2.564	3.474	1.650	3.034	2.748	3.673	3.744	2.796	4.242	nan	0.493	0.282	0.760	0.271	0.240	3.751
11733	chr5	125624293	125625924	+	0	NA	intron (NM_001190352, intron 2 of 8)	intron (NM_001190352, intron 2 of 8)	92690	NM_001190352	208151	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding	1.199	1.441	1.694	1.670	1.624	1.253	1.615	1.542	2.656	nan	1.604	1.109	1.420	2.082	nan	1.352	1.621	1.779	nan	2.368	3.504	2.052	nan	4.234	nan
3158	chr12	4479527	4480962	+	0	NA	Intergenic	B4A|SINE|B4	-3062	NM_010881	17977	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	4.656	1.168	0.468	2.367	2.069	1.060	2.818	1.728	1.908	1.629	0.890	0.702	4.205	4.063	2.175	4.342	4.353	3.190	0.708	1.905	0.974	0.843	0.821	0.976	4.458
12972	chr7	19984612	19986258	+	0	NA	intron (NM_027839, intron 8 of 11)	B1_Mur4|SINE|Alu	20023	NM_027839	71601	Mm.98097	NM_027839	ENSMUSG00000070777	Ceacam20	9130012D09Rik	carcinoembryonic antigen-related cell adhesion molecule 20	protein-coding	3.371	1.390	0.851	2.913	2.973	1.861	7.187	7.133	1.286	3.159	1.754	1.448	3.828	6.342	5.339	4.099	4.663	4.043	2.837	2.268	1.754	3.934	4.279	3.871	7.855
11881	chr5	139953810	139956620	+	0	NA	intron (NM_175522, intron 1 of 1)	intron (NM_175522, intron 1 of 1)	47272	NM_175522	243312	Mm.237102	NM_175522	ENSMUSG00000048988	Elfn1	A930017N06Rik|AI197272|Ppp1r28	leucine rich repeat and fibronectin type III, extracellular 1	protein-coding	3.784	1.064	0.784	2.499	4.695	3.268	1.791	3.223	2.349	2.751	1.231	4.745	1.881	2.500	2.463	1.952	1.687	2.177	0.821	0.553	1.186	0.855	nan	0.686	2.994
9452	chr3	88520785	88523566	+	0	NA	Intergenic	Intergenic	-10220	NM_001029890	72640	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	5.815	4.904	2.115	7.558	3.483	2.487	7.523	7.719	4.293	4.271	5.239	2.892	6.773	7.811	7.232	7.079	5.019	6.399	3.313	2.039	1.934	3.644	2.783	2.146	6.242
14655	chr8	120264831	120267327	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-37849	NR_110496	434353	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0.770	0.918	0.517	0.403	0.347	0.207	1.332	6.543	0.647	0.648	4.768	3.591	0.928	0.912	1.850	nan	0.587	0.700	1.705	0.844	0.816	4.801	0.555	0.392	0.796
9774	chr3	122320566	122324507	+	0	NA	Intergenic	Intergenic	-28833	NR_030439	791077		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	8.408	1.682	0.764	9.908	6.050	3.890	10.884	8.810	6.027	13.676	6.463	4.954	11.596	11.782	9.512	10.975	7.947	9.899	4.936	3.142	3.266	5.749	4.462	4.326	14.450
7990	chr2	18593447	18595366	+	0	NA	Intergenic	ORR1B1|LTR|ERVL-MaLR	-78056	NM_147778	12238	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	9.447	11.805	2.396	13.885	3.976	2.273	8.166	9.117	7.422	14.918	7.579	4.945	8.545	8.247	10.806	12.175	6.071	11.898	8.462	2.452	2.538	8.734	3.633	4.624	17.691
8388	chr2	76998505	77011574	+	0	NA	Intergenic	L1MC|LINE|L1	-22492	NM_011652	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	8.597	0.847	0.454	4.996	3.225	1.738	6.208	5.904	5.851	7.444	3.197	1.619	9.036	8.382	6.663	8.330	8.105	8.654	0.740	0.801	0.637	1.102	0.785	0.446	10.083
2767	chr11	100001127	100013205	+	0	NA	Intergenic	Intergenic	9046	NM_027983	71888	Mm.440318	NM_027983	ENSMUSG00000035592	Krt33a	2310015J09Rik	keratin 33A	protein-coding	3.912	nan	0.562	2.849	4.138	2.710	4.491	7.406	3.622	4.329	5.507	6.217	4.136	6.633	4.648	5.089	nan	4.206	1.184	nan	0.956	1.366	nan	nan	3.932
5685	chr15	100961564	100966824	+	0	NA	intron (NM_011323, intron 5 of 25)	intron (NM_011323, intron 5 of 25)	27923	NM_011323	20273	Mm.385012	NM_011323	ENSMUSG00000023033	Scn8a	AI853486|C630029C19Rik|NaCh6|Nav1.6|dmu|med|mnd-2|mnd2|nmf2|nmf335|nmf58|nur14|seal	sodium channel, voltage-gated, type VIII, alpha	protein-coding	4.232	2.211	0.714	6.758	1.977	1.181	2.257	2.295	2.481	3.571	1.139	0.957	1.318	2.467	2.414	nan	1.930	3.876	0.900	1.044	0.855	0.809	0.663	0.598	4.684
6769	chr17	58142886	58150680	+	0	NA	intron (NM_001081653, intron 11 of 23)	intron (NM_001081653, intron 11 of 23)	377213	NM_001081653	620292	Mm.391030	NM_001081653	ENSMUSG00000038048	Cntnap5c	Caspr5-3|EG620292|Gm325	contactin associated protein-like 5C	protein-coding	3.790	nan	0.423	1.977	1.695	0.786	3.118	1.511	3.324	2.878	0.338	0.490	4.074	3.401	4.997	6.190	4.273	5.417	0.538	0.343	0.119	0.180	0.205	0.126	3.447
15028	chr9	44865623	44869569	+	0	NA	intron (NM_001081049, intron 1 of 35)	intron (NM_001081049, intron 1 of 35)	13678	NM_001081049	214162	Mm.2389	NM_001081049	ENSMUSG00000002028	Kmt2a	6430520K01|ALL-1|All1|Cxxc7|HRX|HTRX1|Mll|Mll1|mKIAA4050	lysine (K)-specific methyltransferase 2A	protein-coding	3.949	2.428	1.662	2.818	3.446	1.568	4.598	7.528	4.329	3.080	7.673	6.393	4.325	4.998	4.732	2.179	2.139	5.207	0.816	1.310	0.730	nan	0.892	0.458	2.590
3667	chr12	103669915	103671539	+	0	NA	intron (NM_001310472, intron 4 of 5)	MLTR18B_MM|LTR|ERVK	6035	NM_001310472	194604		NM_001310472	ENSMUSG00000071179	Serpina16	Gm46	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 16	protein-coding	5.808	3.980	2.361	nan	1.675	0.712	2.380	2.787	nan	2.361	0.919	0.435	3.186	3.614	3.611	5.714	2.403	3.326	0.764	0.658	0.343	0.780	0.294	0.055	5.644
13702	chr7	127003128	127005836	+	0	NA	intron (NM_080638, intron 1 of 14)	PB1D10|SINE|Alu	10112	NM_080638	78388	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	6.320	3.496	1.646	4.531	3.073	1.735	2.580	4.446	4.546	3.572	4.954	2.976	2.328	2.873	3.721	5.874	3.170	6.128	1.108	1.152	0.456	1.338	0.646	0.619	5.251
7509	chr19	6943380	6946156	+	0	NA	intron (NM_001285453, intron 2 of 3)	B1_Mus1|SINE|Alu	2206	NM_001285453	12015	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	6.652	6.721	4.893	3.760	9.674	7.764	7.109	7.451	4.673	4.349	5.175	3.783	3.982	5.893	3.620	nan	7.522	5.036	2.283	3.150	3.757	2.109	5.975	4.714	5.482
1859	chr10	127612496	127618821	+	0	NA	intron (NM_008512, intron 1 of 88)	intron (NM_008512, intron 1 of 88)	5490	NM_008512	16971	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	6.268	nan	2.118	5.861	6.191	4.448	4.500	5.429	4.943	4.519	3.402	2.487	4.170	6.265	4.477	4.630	5.178	5.242	1.527	1.535	2.056	1.512	nan	1.304	4.767
8171	chr2	34698465	34700310	+	0	NA	intron (NM_025709, intron 18 of 26)	intron (NM_025709, intron 18 of 26)	55845	NM_025709	66691	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	4.400	1.069	0.687	4.179	3.596	2.609	1.342	3.403	2.357	nan	0.967	1.849	0.742	2.047	1.167	1.844	1.501	2.301	1.212	2.145	1.624	1.139	1.205	1.316	1.737
15051	chr9	48455540	48457731	+	0	NA	Intergenic	Intergenic	2291	NR_026561	667933	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	1.813	4.068	1.558	6.327	1.239	0.183	0.338	2.167	2.177	2.096	0.790	0.484	0.376	1.308	nan	0.987	0.290	4.176	0.765	1.038	0.969	nan	0.809	0.625	2.226
12749	chr6	128998509	128999923	+	0	NA	intron (NR_015455, intron 1 of 2)	intron (NR_015455, intron 1 of 2)	6255	NR_015455	408064	Mm.172429	NR_015455		BC064078	-	cDNA sequence BC064078	ncRNA	1.965	2.207	1.376	0.761	0.761	0.844	1.300	2.545	1.230	1.517	1.665	2.293	0.499	0.522	0.985	nan	3.009	1.284	3.398	5.805	3.042	3.157	6.341	3.604	1.705
10480	chr4	122631679	122633758	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-56541	NM_023865	77432	Mm.491436	NM_023865	ENSMUSG00000023263	9530002B09Rik	Aump|Vpp1|Vppl	RIKEN cDNA 9530002B09 gene	protein-coding	5.633	3.932	1.368	3.384	3.884	1.743	3.197	2.935	5.061	6.661	5.214	3.332	2.645	7.051	5.334	3.526	2.322	4.862	5.433	7.417	6.890	6.558	3.739	3.260	7.836
3782	chr12	114374646	114383177	+	0	NA	Intergenic	CpG	90555	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	9.048	2.253	0.610	11.505	3.402	1.949	8.587	6.797	5.049	7.573	2.522	1.624	10.262	12.180	10.527	12.342	8.212	10.534	2.663	1.768	1.790	5.490	1.614	1.131	20.810
7835	chr19	46686596	46689250	+	0	NA	Intergenic	Intergenic	-1983	NM_025563	66439	Mm.87163	NM_025563	ENSMUSG00000062376	Borcs7	2010012O05Rik|4930569L17Rik|AI413851|AI467257	BLOC-1 related complex subunit 7	protein-coding	4.594	2.545	1.150	3.987	5.691	4.760	9.962	9.793	3.367	4.626	3.642	3.454	5.168	6.339	6.246	6.467	9.267	4.888	0.702	1.443	1.582	0.594	1.672	1.193	7.480
15631	chr9	122984754	122994363	+	0	NA	intron (NM_010620, intron 14 of 34)	ORR1F|LTR|ERVL-MaLR	-31768	NM_025339	66079	Mm.482265	NM_025339	ENSMUSG00000066233	Tmem42	0610027O18Rik|4933429E06Rik|AV003444|D9Ertd662e	transmembrane protein 42	protein-coding	3.194	0.935	0.608	3.243	1.214	0.763	2.047	2.804	5.710	6.881	0.953	0.540	4.331	4.253	4.929	7.142	2.665	6.392	0.732	0.538	0.424	0.507	nan	0.264	8.739
9897	chr4	3648302	3649707	+	0	NA	Intergenic	Intergenic	-7502	NR_040643	70143	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	3.191	5.771	4.807	2.625	3.424	1.468	0.747	2.220	1.563	1.964	1.462	1.141	0.989	1.897	1.108	1.845	1.613	1.982	0.705	nan	0.676	0.538	0.841	0.408	1.425
1048	chr1	194913464	194915541	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-24319	NM_133654	12490	Mm.29798	NM_133654	ENSMUSG00000016494	Cd34	AU040960	CD34 antigen	protein-coding	0.812	1.234	0.403	0.659	0.274	0.119	0.592	0.286	0.327	0.581	0.442	0.145	0.327	0.780	0.249	nan	0.504	0.459	5.409	3.683	2.534	4.744	4.189	3.394	nan
7350	chr18	67882663	67888826	+	0	NA	TTS (NM_027556)	TTS (NM_027556)	-47513	NM_172631	52662	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	7.164	5.570	1.490	5.513	4.768	3.412	5.547	5.081	4.467	7.613	2.925	2.128	6.318	6.133	5.299	6.107	4.237	5.607	1.913	1.097	1.204	2.594	1.323	1.455	7.640
13328	chr7	82726743	82734694	+	0	NA	intron (NM_175317, intron 15 of 19)	L1M5|LINE|L1	24926	NR_046004	77800	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	7.785	4.113	2.258	6.180	6.432	3.698	7.196	6.108	5.826	6.214	4.606	2.682	11.359	9.435	6.469	7.074	7.317	9.248	2.413	2.870	1.785	2.259	2.377	1.386	7.611
11543	chr5	108697086	108699715	+	0	NA	intron (NM_001164259, intron 2 of 5)	intron (NM_001164259, intron 2 of 5)	4171	NM_054071	116701	Mm.35691	NM_054071	ENSMUSG00000008090	Fgfrl1	FGFR5|FGFR5beta|FGFR5gamma	fibroblast growth factor receptor-like 1	protein-coding	9.052	10.902	3.394	9.471	4.645	2.247	6.925	7.599	6.625	10.349	6.389	3.649	6.451	8.056	9.413	9.482	5.946	9.204	5.499	3.279	2.929	6.431	4.093	3.414	11.206
1061	chr1	195915388	195917979	+	0	NA	Intergenic	Intergenic	-739968	NM_007758	12902	Mm.235387	NM_007758	ENSMUSG00000026616	Cr2	C3DR|CD21|CD35|Cr-1|Cr-2|Cr1	complement receptor 2	protein-coding	5.958	0.453	0.348	1.983	2.657	1.494	5.706	4.109	5.411	4.654	2.142	4.906	6.395	4.385	5.019	6.565	6.465	5.469	0.835	0.420	0.163	0.443	nan	0.348	2.803
5039	chr15	10596830	10599361	+	0	NA	intron (NM_001166408, intron 5 of 17)	intron (NM_001166408, intron 5 of 17)	-2198	NR_033541	100038608	Mm.450744	NR_033541		Gm10389	ENSMUSG00000072658	predicted gene 10389	ncRNA	4.918	2.228	0.590	3.067	2.027	0.882	5.646	5.746	3.510	3.063	2.672	1.448	5.294	4.386	4.532	5.069	4.242	4.472	0.630	0.416	0.198	0.213	0.438	0.228	4.841
14596	chr8	112129714	112140337	+	0	NA	Intergenic	Intergenic	123666	NM_020584	57321	Mm.213064	NM_020584	ENSMUSG00000033430	Terf2ip	Rap1	telomeric repeat binding factor 2, interacting protein	protein-coding	2.329	3.079	1.308	2.158	1.875	1.309	1.627	2.045	1.733	1.610	1.227	1.160	1.810	2.025	2.130	2.792	2.517	2.225	3.876	4.241	3.393	nan	2.164	2.106	2.698
3792	chr12	118041421	118043652	+	0	NA	intron (NM_010060, intron 39 of 81)	intron (NM_010060, intron 39 of 81)	156507	NM_010060	13411	Mm.390540	NM_010060	ENSMUSG00000018581	Dnah11	Dnahc11|b2b1203Clo|b2b1279Clo|b2b1289Clo|b2b1727Clo|b2b598Clo|iv|lrd	dynein, axonemal, heavy chain 11	protein-coding	4.319	0.575	0.347	2.834	1.988	0.940	5.104	2.086	2.722	4.124	1.363	0.590	6.059	4.347	3.541	4.448	1.947	4.338	1.338	0.358	0.483	1.044	0.521	0.343	4.630
2054	chr11	30186639	30193085	+	0	NA	intron (NM_175836, intron 1 of 34)	intron (NM_175836, intron 1 of 34)	8395	NM_009260	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	4.185	0.965	0.516	6.576	1.923	1.152	1.664	1.204	2.815	3.015	1.248	0.886	1.817	2.968	2.283	3.780	nan	6.034	1.080	0.999	0.576	1.387	0.517	0.473	2.886
12201	chr6	47737961	47739863	+	0	NA	Intergenic	L1_Mus2|LINE|L1	5319	NR_002841	19799		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	7.986	5.652	4.238	5.298	7.266	4.013	7.809	8.807	3.982	5.150	3.913	2.402	5.854	9.479	6.452	8.577	9.524	5.962	nan	6.202	2.795	4.193	4.117	3.199	5.200
2785	chr11	100584620	100587779	+	0	NA	intron (NM_019795, intron 9 of 13)	intron (NM_019795, intron 9 of 13)	10308	NM_001146318	12799	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	6.213	2.245	0.836	6.701	3.491	2.176	1.977	3.498	5.060	4.982	2.453	2.688	2.027	3.822	3.316	3.613	2.680	5.527	2.052	nan	2.293	1.751	nan	nan	3.936
11126	chr5	32182286	32188686	+	0	NA	Intergenic	Intergenic	-47222	NM_030072	665270	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	2.947	1.950	1.370	nan	2.144	1.434	3.090	2.344	2.277	2.435	3.395	4.622	1.887	2.601	2.236	1.836	2.228	2.045	1.323	1.492	1.041	1.273	4.021	3.257	1.098
10858	chr4	144660077	144666239	+	0	NA	Intergenic	MERVK26-int|LTR|ERVK	23210	NM_001085504	230890	Mm.457843	NM_001085504	ENSMUSG00000078505	Gm436	-	predicted gene 436	protein-coding	5.923	nan	0.591	5.382	5.362	2.794	5.222	6.972	7.528	9.845	3.331	3.009	7.163	8.342	6.075	8.371	4.324	7.962	0.971	0.594	0.339	1.099	0.751	0.612	5.918
3635	chr12	101344871	101349419	+	0	NA	Intergenic	L1Md_T|LINE|L1	-57528	NM_173023	271036	Mm.84218	NM_173023	ENSMUSG00000047014	Catsperb	4931410B03|4932415G16Rik	catsper channel auxiliary subunit beta	protein-coding	5.903	4.363	2.400	4.030	4.374	3.441	4.010	3.184	2.731	3.309	2.454	1.978	4.402	5.921	3.876	4.197	4.984	nan	2.659	2.084	1.672	2.254	2.004	1.370	6.840
3224	chr12	21421942	21427627	+	0	NA	Intergenic	Intergenic	-7348	NM_011739	22630	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	protein-coding	4.630	5.957	1.920	3.759	1.815	1.647	4.594	3.780	3.906	5.356	4.367	2.086	5.770	6.044	5.411	5.764	4.946	4.783	3.424	1.726	1.644	4.130	3.058	2.404	7.906
10853	chr4	144567271	144577347	+	0	NA	Intergenic	L1Md_F3|LINE|L1	-7175	NM_001085542	627085	Mm.457899	NM_001085542	ENSMUSG00000078506	Gm13124	OTTMUSG00000010546	predicted gene 13124	protein-coding	5.473	3.845	1.838	4.761	3.570	1.882	3.918	7.218	5.791	7.674	3.740	1.790	4.887	5.607	4.890	6.820	3.098	6.665	1.171	1.023	0.620	1.210	1.149	0.652	4.451
1555	chr10	85656557	85658180	+	0	NA	intron (NM_001017525, intron 14 of 14)	RLTR11A2|LTR|ERVK	58957	NM_001017525	74007	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	4.173	0.745	0.477	2.878	2.049	1.025	3.265	3.255	3.376	3.109	3.712	1.214	1.729	4.022	3.197	4.064	3.732	3.867	1.685	0.782	0.459	nan	nan	0.699	5.191
13746	chr7	133792566	133793756	+	0	NA	intron (NM_025850, intron 1 of 10)	intron (NM_025850, intron 1 of 10)	-10376	NM_001286031	101437	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	7.876	11.378	3.046	10.025	2.479	1.495	5.176	7.676	5.211	8.725	5.271	1.578	7.073	7.876	8.825	8.969	5.472	8.646	5.408	1.907	1.695	6.997	3.552	2.313	10.405
10086	chr4	53230156	53232655	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-14791	NR_040665	78180	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	6.912	3.870	1.197	6.215	5.006	2.804	3.496	4.483	3.558	4.838	2.048	1.158	6.353	5.794	5.185	7.045	2.169	6.200	4.673	2.410	2.131	6.497	2.959	1.576	7.169
2870	chr11	105285034	105288663	+	0	NA	Intergenic	B4A|SINE|B4	-5798	NM_008626	17534	Mm.235616	NM_008626	ENSMUSG00000020695	Mrc2	Endo180|mKIAA0709|uPARAP	mannose receptor, C type 2	protein-coding	1.250	0.798	0.606	nan	0.658	0.648	1.131	1.330	nan	nan	3.167	2.698	0.640	nan	0.962	1.133	0.955	nan	6.107	3.779	3.793	nan	7.580	6.798	0.951
11675	chr5	122760171	122762464	+	0	NA	intron (NM_145358, intron 2 of 15)	Lx8|LINE|L1	18093	NM_001199676	207565	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	1.439	8.586	6.194	3.057	3.378	2.138	1.651	1.609	2.323	2.025	2.214	1.599	1.360	2.340	2.477	1.988	2.720	2.945	6.440	nan	3.484	3.696	5.814	6.748	1.945
10560	chr4	128940508	128950687	+	0	NA	intron (NM_001301841, intron 7 of 8)	PB1D10|SINE|Alu	16858	NM_172875	242669	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	4.576	1.615	1.177	3.645	8.603	6.731	4.467	5.917	3.016	4.619	3.207	2.131	3.372	7.523	nan	5.061	2.737	3.484	2.358	2.369	1.839	2.369	2.669	2.488	3.886
4337	chr13	101319850	101323446	+	0	NA	Intergenic	Intergenic	67329	NR_045846	71174	Mm.399537	NR_045846	ENSMUSG00000100733	4933416M06Rik	-	RIKEN cDNA 4933416M06 gene	ncRNA	8.431	0.693	0.368	8.491	5.228	2.669	7.787	10.132	3.745	7.000	4.189	3.140	7.021	8.380	8.080	7.511	4.919	7.999	5.648	3.392	3.160	6.887	5.076	5.771	14.642
2859	chr11	103557997	103559290	+	0	NA	intron (NM_001033434, intron 7 of 13)	L1Md_F2|LINE|L1	56096	NM_001033434	380730	Mm.380214	NM_001033434	ENSMUSG00000034239	Gm884	LRRC37	predicted gene 884	protein-coding	11.129	15.029	5.467	10.342	6.326	4.899	6.674	8.407	5.914	13.368	9.237	5.514	7.093	10.021	9.587	9.842	7.026	10.174	5.052	4.783	6.770	nan	5.101	5.831	12.681
13911	chr7	150201314	150202509	+	0	NA	Intergenic	Intergenic	4887076	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	3.097	2.503	0.768	2.403	1.358	0.793	4.178	3.161	nan	1.682	3.291	1.457	1.688	3.793	3.261	2.896	2.168	3.099	1.310	0.803	0.587	3.277	nan	0.936	4.755
6764	chr17	57216510	57218408	+	0	NA	promoter-TSS (NR_105944)	promoter-TSS (NR_105944)	-231	NR_105944	102465591		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	4.315	14.000	6.784	2.540	2.238	0.794	1.084	0.985	1.769	2.208	2.330	1.106	0.663	1.364	1.629	1.875	1.393	1.346	0.772	3.130	2.247	0.802	1.087	0.248	2.605
999	chr1	186682962	186689370	+	0	NA	intron (NM_009367, intron 1 of 6)	L2a|LINE|L2	19823	NM_009367	21808	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	4.240	1.063	0.366	2.881	1.852	0.920	3.163	6.141	3.183	2.929	2.818	1.622	4.419	4.366	3.923	6.482	2.695	4.257	0.648	0.607	0.597	1.172	0.737	0.539	4.385
8749	chr2	145706410	145710226	+	0	NA	intron (NR_033220, intron 1 of 3)	intron (NR_033220, intron 1 of 3)	7123	NR_033220	408057	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	3.060	1.472	0.604	5.112	1.718	0.782	1.456	2.084	2.670	2.880	1.407	0.654	2.179	2.481	2.459	3.426	2.073	3.894	nan	0.883	0.267	1.099	0.593	0.425	3.779
7706	chr19	32392129	32397805	+	0	NA	Intergenic	Tigger10|DNA|TcMar-Tigger	5751	NR_033198	67188	Mm.391160	NR_033198	ENSMUSG00000097787	2700046G09Rik	-	RIKEN cDNA 2700046G09 gene	ncRNA	nan	1.382	0.784	3.773	3.668	1.457	3.667	7.096	5.197	4.174	3.368	2.335	3.730	4.295	4.395	5.954	5.191	4.612	nan	1.168	0.642	2.294	nan	0.602	3.991
9112	chr2	180740315	180741268	+	0	NA	intron (NM_183161, intron 12 of 12)	intron (NM_183161, intron 12 of 12)	15452	NM_183161	228993	Mm.87189	NM_183161	ENSMUSG00000023393	Slc17a9	1700019H03Rik|BC019537|Vnut	solute carrier family 17, member 9	protein-coding	1.375	0.388	0.608	0.784	0.425	0.229	1.073	1.458	1.652	1.911	0.393	0.309	1.498	3.391	2.387	2.644	1.336	2.270	0.539	0.424	0.129	0.550	0.232	0.026	2.875
10840	chr4	141749253	141750816	+	0	NA	intron (NM_001081408, intron 2 of 6)	intron (NM_001081408, intron 2 of 6)	3359	NM_001081408	75986	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	3.800	0.721	0.249	3.447	1.100	0.820	3.470	4.785	3.027	2.501	2.318	1.508	3.368	5.042	4.023	5.419	2.433	5.487	2.785	1.533	1.291	3.575	nan	1.297	9.226
2169	chr11	51678281	51680201	+	0	NA	Intergenic	Intergenic	9393	NM_025319	66050	Mm.35693	NM_025319	ENSMUSG00000007777	0610009B22Rik	-	RIKEN cDNA 0610009B22 gene	protein-coding	3.473	1.248	0.615	3.526	4.553	4.565	3.198	5.484	4.597	4.264	3.852	3.085	3.171	6.241	3.684	nan	2.611	nan	1.634	0.657	1.154	nan	nan	1.481	2.180
4211	chr13	63164827	63166449	+	0	NA	intron (NM_001289926, intron 6 of 15)	intron (NM_001289926, intron 6 of 15)	-74391	NR_110520	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	3.152	0.781	0.363	2.982	3.296	2.587	2.258	3.751	2.845	3.270	2.694	1.379	4.726	3.971	3.179	4.092	2.017	4.962	1.610	0.814	0.960	1.240	1.442	1.170	3.670
10753	chr4	137484118	137490112	+	0	NA	intron (NM_008305, intron 1 of 96)	MIRb|SINE|MIR	18312	NM_008305	15530	Mm.273662	NM_008305	ENSMUSG00000028763	Hspg2	AI852380|Pcn|Plc|per	perlecan (heparan sulfate proteoglycan 2)	protein-coding	7.523	0.866	0.586	7.599	9.883	8.132	8.248	7.369	6.922	8.794	7.079	3.834	8.295	11.724	7.359	8.297	5.571	6.953	3.431	2.197	2.570	3.378	nan	4.180	11.378
8545	chr2	117868470	117872028	+	0	NA	intron (NR_126479, intron 8 of 9)	intron (NR_126479, intron 8 of 9)	48321	NR_040631	73938	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	4.394	0.818	0.377	1.519	1.079	0.445	3.845	5.689	2.604	2.336	1.868	0.901	5.020	4.207	3.615	5.322	3.484	5.014	1.875	0.750	0.241	1.592	1.259	1.038	3.372
1315	chr10	58772084	58773641	+	0	NA	Intergenic	L1_Mm|LINE|L1	-40497	NM_172788	237353	Mm.333078	NM_172788	ENSMUSG00000037990	Sh3rf3	4831416G18Rik|Igfbp5-ip|Sh3md4|Sh3rf31	SH3 domain containing ring finger 3	protein-coding	4.689	0.931	0.212	2.288	2.997	2.099	2.390	2.585	2.357	3.296	2.759	1.355	2.811	5.089	2.257	3.362	2.680	2.842	nan	0.770	0.791	1.065	0.927	1.195	nan
6983	chr18	4349318	4355615	+	0	NA	intron (NM_007746, intron 1 of 7)	intron (NM_007746, intron 1 of 7)	487	NM_007746	26410	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	8.736	10.432	3.702	8.775	4.604	2.680	3.770	5.923	4.938	6.212	3.796	2.274	nan	6.482	5.527	6.032	3.908	6.953	4.904	2.304	1.589	5.081	4.722	3.461	6.640
9911	chr4	8463019	8464898	+	0	NA	Intergenic	MMERVK9C_I-int|LTR|ERVK	-71686	NM_021518	59021	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	8.344	9.858	4.564	9.408	4.794	4.731	7.089	7.561	5.138	11.231	5.484	4.708	6.761	8.203	7.843	8.770	5.676	7.562	4.910	4.117	4.059	5.218	3.374	5.677	10.697
4599	chr14	35122687	35128573	+	0	NA	intron (NM_008166, intron 4 of 15)	intron (NM_008166, intron 4 of 15)	231021	NR_029774	723847		NR_029774	ENSMUSG00000065481	Mir346	Mirn346|mir-346|mmu-mir-346	microRNA 346	ncRNA	6.945	5.202	1.766	6.577	4.339	2.794	5.065	nan	4.870	7.463	3.650	3.265	5.596	7.655	7.673	7.423	5.244	7.030	4.041	1.935	1.824	3.434	2.064	2.003	8.129
10952	chr4	151381427	151385534	+	0	NA	intron (NM_001081557, intron 5 of 23)	intron (NM_001081557, intron 5 of 23)	293910	NM_001308446	105704528	Mm.415128	NM_001308446	ENSMUSG00000078491	Gm13090	OTTMUSG00000010356	predicted gene 13090	protein-coding	6.893	5.351	1.164	11.194	2.478	1.731	5.639	8.806	5.236	11.723	5.813	2.913	8.669	10.868	9.155	9.587	3.610	10.158	3.303	0.683	1.151	8.269	0.908	1.515	13.375
14840	chr9	3004447	3007516	+	0	NA	Intergenic	GSAT_MM|Satellite|Satellite	32762	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	nan	nan	11.032	5.561	6.866	10.175	6.174	nan	6.755	3.922	5.225	8.327	4.219	2.587	1.698	nan	nan	nan	nan	8.027	21.582	2.197	7.851	15.166	nan
3810	chr13	3740923	3745384	+	0	NA	Intergenic	Intergenic	61165	NM_027416	70405	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	6.200	1.701	0.962	3.152	5.128	2.125	4.851	6.124	4.816	4.854	4.535	2.631	4.487	7.735	5.478	5.610	2.643	5.417	2.069	2.245	1.323	2.244	1.483	1.169	6.082
7682	chr19	29229319	29233681	+	0	NA	Intergenic	Intergenic	-20303	NM_001048177	16452	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	3.577	1.127	0.879	nan	1.635	1.786	3.738	2.236	4.551	5.864	nan	0.473	5.679	6.648	2.034	4.558	5.216	5.364	nan	0.782	0.641	0.560	nan	0.952	7.594
4099	chr13	48639827	48642828	+	0	NA	Intergenic	Intergenic	-15655	NM_001301781	218232	Mm.315089	NM_207232	ENSMUSG00000038042	Ptpdc1	AI843923|AW456874|Naa-1|Ptpcd1	protein tyrosine phosphatase domain containing 1	protein-coding	nan	9.042	3.670	nan	6.827	5.599	7.511	6.532	5.543	9.953	6.213	4.575	6.412	9.997	7.209	8.233	5.632	nan	5.408	nan	5.176	4.492	5.224	5.397	10.994
1832	chr10	126477974	126479456	+	0	NA	Intergenic	Intergenic	231676	NR_105841	102465224		NR_105841	ENSMUSG00000098756	Mir378d	Gm27650|mmu-mir-378d	microRNA 378d	ncRNA	6.670	8.662	2.536	6.191	2.724	1.174	5.924	5.499	2.799	4.243	3.432	2.381	4.082	4.748	8.922	7.936	5.516	5.719	4.227	2.877	3.044	5.970	nan	3.104	12.215
6392	chr17	24487104	24506242	+	0	NA	exon (NM_027937, exon 5 of 20)	exon (NM_027937, exon 5 of 20)	7890	NM_027937	268932	Mm.70989	NM_027937	ENSMUSG00000033597	Caskin1	3300002N10Rik|C130061I24|C630036E02Rik|mKIAA1306	CASK interacting protein 1	protein-coding	6.663	3.467	1.579	5.358	3.834	2.492	8.547	4.399	6.117	8.219	1.500	1.323	7.698	8.985	8.029	nan	7.177	7.395	1.727	1.128	1.362	1.787	0.973	0.990	12.474
10008	chr4	41687044	41688550	+	0	NA	intron (NM_016673, intron 1 of 9)	intron (NM_016673, intron 1 of 9)	7656	NM_001136056	12804	Mm.425178	NM_016673	ENSMUSG00000028444	Cntfr	Cntfralpha	ciliary neurotrophic factor receptor	protein-coding	6.607	8.635	1.353	7.774	2.011	1.017	5.524	6.843	4.323	6.751	3.948	3.228	4.467	5.940	8.109	9.384	3.727	7.388	6.040	2.970	2.919	6.334	2.838	1.489	12.100
9327	chr3	57315543	57317352	+	0	NA	Intergenic	Lx7|LINE|L1	-14528	NM_008536	17112	Mm.856	NM_008536	ENSMUSG00000027800	Tm4sf1	L6|M3s1	transmembrane 4 superfamily member 1	protein-coding	3.273	1.322	0.647	4.027	3.775	1.268	5.625	1.023	3.692	3.571	6.450	3.793	2.300	4.445	3.468	2.975	1.887	3.967	0.923	1.132	0.474	0.969	0.470	0.265	2.734
2704	chr11	96607588	96611151	+	0	NA	intron (NM_001033186, intron 4 of 12)	intron (NM_001033186, intron 4 of 12)	144778	NM_001177898	78473	Mm.395840	NM_001033186	ENSMUSG00000057058	Skap1	1700091G21Rik|Scap1|Skap-55	src family associated phosphoprotein 1	protein-coding	3.771	nan	0.435	1.707	2.350	1.354	3.762	1.391	1.887	3.330	2.915	1.307	3.606	7.356	1.618	2.590	1.688	2.202	1.111	nan	0.753	1.086	nan	nan	2.197
6191	chr16	90829479	90834451	+	0	NA	intron (NM_001316761, intron 1 of 5)	intron (NM_001316761, intron 1 of 5)	1106	NM_001316761	70967	Mm.253077	NM_027627	ENSMUSG00000039903	Eva1c	1700092M14Rik|4931408A02Rik|Fam176c	eva-1 homolog C (C. elegans)	protein-coding	6.351	nan	0.537	9.477	3.263	2.144	3.533	8.181	5.368	7.826	7.028	3.913	6.734	7.606	5.994	8.271	3.541	8.338	6.117	2.106	2.178	nan	3.258	3.584	9.925
5946	chr16	25465346	25467299	+	0	NA	Intergenic	Intergenic	179505	NM_175165	71338	Mm.126851	NM_175165	ENSMUSG00000048399	Tprg	5430420C16Rik|Tprg1	transformation related protein 63 regulated	protein-coding	5.298	0.733	0.335	2.170	2.326	0.993	6.731	7.122	3.824	4.273	5.534	2.894	9.483	7.136	4.119	6.385	3.695	4.550	0.756	0.656	0.439	0.836	nan	0.308	4.658
7254	chr18	55649832	55652462	+	0	NA	Intergenic	Intergenic	-660967	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	4.075	nan	0.209	1.683	1.311	0.403	3.985	2.246	1.933	1.881	1.088	0.397	2.784	2.251	2.708	4.067	3.363	5.288	nan	0.422	0.105	nan	0.468	0.275	nan
14331	chr8	74188831	74190892	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-683313	NM_027837	71597	Mm.158735	NM_027837	ENSMUSG00000031621	Isx	9130012O13Rik|Pix-1	intestine specific homeobox	protein-coding	3.199	2.028	0.964	1.256	2.333	0.816	6.350	nan	nan	3.106	1.917	2.316	4.335	5.896	3.927	nan	5.859	2.596	1.738	2.371	2.069	nan	2.469	2.504	4.475
12507	chr6	96060970	96071158	+	0	NA	Intergenic	B3|SINE|B2	-47090	NM_182808	320265	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	0.746	0.638	0.498	1.032	0.384	0.157	0.447	0.428	0.838	0.926	0.527	0.179	0.400	0.621	nan	nan	0.777	1.225	nan	nan	1.593	7.579	4.967	3.851	0.755
3176	chr12	8860348	8868136	+	0	NA	Intergenic	ID2|SINE|ID	-57065	NM_008640	17775	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	2.858	1.105	0.479	1.897	2.495	1.756	3.222	2.091	2.640	3.181	8.129	3.801	3.273	4.290	3.296	2.440	1.282	3.208	0.536	0.719	0.578	0.741	0.378	0.289	3.569
1424	chr10	74674305	74675867	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-292145	NM_010311	14687	Mm.32595	NM_010311	ENSMUSG00000040009	Gnaz	AI847979|Gz	guanine nucleotide binding protein, alpha z subunit	protein-coding	9.382	7.403	3.404	8.530	5.531	4.167	6.206	7.563	5.029	10.323	6.418	3.884	4.970	7.894	nan	7.602	5.832	5.659	nan	4.777	5.595	6.304	7.213	8.244	11.006
13632	chr7	119949159	119952196	+	0	NA	Intergenic	Intergenic	50566	NR_126475	73919	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	4.458	0.545	0.615	2.609	1.510	0.511	3.462	5.674	3.089	3.993	1.345	1.331	4.801	4.704	4.065	4.222	5.119	4.022	5.982	3.817	1.654	5.109	4.585	2.291	4.180
11817	chr5	136861876	136864414	+	0	NA	intron (NM_001346699, intron 1 of 12)	ID_B1|SINE|B4	19962	NM_024474	140709	Mm.295020	NM_024474	ENSMUSG00000004415	Col26a1	9430032K24Rik|BC002218|Col26a|Emid2|Emu2	collagen, type XXVI, alpha 1	protein-coding	2.965	0.946	0.548	2.713	3.645	3.024	3.970	2.967	3.813	2.984	0.701	0.673	2.977	5.078	4.111	3.816	2.583	4.586	0.903	0.749	0.435	0.648	nan	0.528	2.502
12180	chr6	39191893	39195113	+	0	NA	intron (NM_001033430, intron 1 of 19)	MTC|LTR|ERVL-MaLR	13270	NM_001033430	338523	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|ENSMUSG00000073143|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	5.811	3.250	1.776	4.867	4.793	4.147	6.896	9.788	4.033	4.748	4.472	4.500	7.136	8.836	6.872	8.203	4.742	6.431	nan	2.626	1.519	4.344	nan	2.188	5.198
8109	chr2	31026778	31028759	+	0	NA	3' UTR (NM_001177649, exon 15 of 15)	3' UTR (NM_001177649, exon 15 of 15)	45489	NM_028846	74270	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	3.671	3.674	1.489	4.515	1.921	2.194	1.872	1.645	3.570	3.342	2.253	0.617	2.405	4.221	3.102	3.855	3.286	3.177	0.821	0.909	0.433	0.994	0.580	0.429	4.158
14184	chr8	42222630	42224396	+	0	NA	Intergenic	Lx8b|LINE|L1	396246	NR_045497	69966	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA	2.151	0.327	0.282	2.442	4.308	2.363	2.456	4.730	3.833	3.774	2.381	1.797	3.906	4.815	3.110	3.321	1.959	3.702	0.537	0.803	0.166	0.583	0.182	0.074	nan
14791	chr8	128091908	128094415	+	0	NA	Intergenic	Intergenic	185064	NR_105822	102465212		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	5.778	6.877	1.853	7.765	2.677	1.318	3.707	nan	3.358	7.209	3.878	2.460	4.806	7.068	nan	7.899	4.436	6.717	nan	1.743	1.835	nan	2.852	nan	nan
6198	chr16	91526831	91528137	+	0	NA	Intergenic	PB1D10|SINE|Alu	-19610	NM_008338	15980	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	4.152	1.687	1.104	2.514	3.579	2.250	4.355	4.107	2.156	2.312	1.996	1.076	3.145	4.090	4.062	3.824	3.117	3.156	0.847	1.009	1.141	nan	0.338	0.529	3.561
7115	chr18	34531825	34535919	+	0	NA	Intergenic	Intergenic	-8456	NM_009290	20890	Mm.558	NM_009290	ENSMUSG00000012282	Wnt8a	Stra11|Wnt-8A|Wnt-8D|Wnt8d	wingless-type MMTV integration site family, member 8A	protein-coding	5.015	6.104	1.739	5.677	2.407	1.084	4.323	7.455	3.691	5.796	3.455	1.943	5.951	nan	5.309	nan	4.305	6.115	2.603	0.977	1.448	2.705	1.434	2.149	8.695
9831	chr3	137603318	137605091	+	0	NA	Intergenic	L1Md_T|LINE|L1	-19468	NM_030143	73284	Mm.250841	NM_030143	ENSMUSG00000046818	Ddit4l	1700037B15Rik|1700108M02Rik|REDD2|RTP801L|Smhs1	DNA-damage-inducible transcript 4-like	protein-coding	2.287	nan	0.589	1.936	1.949	1.697	4.045	2.888	1.902	1.922	0.963	1.287	3.258	4.454	3.109	3.697	4.121	3.100	2.925	1.657	2.513	2.337	1.728	1.814	2.851
11895	chr5	140973886	140979865	+	0	NA	intron (NM_175362, intron 1 of 24)	intron (NM_175362, intron 1 of 24)	23721	NM_175362	108723	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	1.847	1.460	1.021	2.775	1.543	1.000	2.356	3.846	2.461	2.575	0.863	0.655	3.524	5.507	2.829	4.134	3.475	2.478	1.496	1.098	0.986	1.623	nan	0.989	2.510
10767	chr4	138013386	138016489	+	0	NA	intron (NM_172703, intron 2 of 34)	intron (NM_172703, intron 2 of 34)	21481	NM_172703	230861	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	nan	0.618	0.285	1.566	0.863	0.335	4.187	4.114	nan	0.892	0.308	0.420	3.709	3.147	2.501	3.692	1.757	nan	1.482	0.875	0.500	2.967	nan	0.538	1.405
4623	chr14	45934198	45943167	+	0	NA	Intergenic	L1M3|LINE|L1	-145345	NR_002875	218963	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo	4.422	2.895	1.149	3.589	3.120	2.053	2.824	9.192	3.220	4.726	3.962	3.352	4.089	5.159	4.673	4.231	2.941	4.281	3.280	1.565	1.264	3.663	1.406	1.452	4.448
9030	chr2	167597620	167608672	+	0	NA	Intergenic	Intergenic	28859	NM_001311146	66589	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	12.700	5.594	2.254	10.886	8.842	5.011	10.063	12.760	7.358	12.124	8.360	4.310	9.377	11.734	9.465	13.885	11.152	nan	nan	3.290	2.947	5.808	2.863	2.425	15.838
15283	chr9	71616273	71619970	+	0	NA	Intergenic	MTC|LTR|ERVL-MaLR	-25761	NM_001033208	102371	Mm.27585	NM_001033208	ENSMUSG00000041361	Myzap	AA407270|AV006038|Gcom1|Gm640|Grinl1a7|Myozap	myocardial zonula adherens protein	protein-coding	5.221	1.467	0.686	4.969	2.865	1.575	4.040	5.379	4.125	6.060	3.190	2.610	6.119	7.205	nan	6.079	4.082	4.616	nan	0.996	0.982	1.126	1.192	0.771	8.920
14455	chr8	92871489	92873127	+	0	NA	intron (NM_173014, intron 4 of 13)	intron (NM_173014, intron 4 of 13)	16958	NM_173014	270084	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	A330042H22|Aytl1|Aytl1a|lpafat1	lysophosphatidylcholine acyltransferase 2	protein-coding	2.171	0.341	0.393	2.854	3.216	1.907	2.937	10.719	nan	5.058	0.619	2.102	9.912	9.494	5.047	2.671	3.546	1.994	nan	8.066	7.235	6.647	7.515	9.068	1.878
4388	chr13	110019607	110023007	+	0	NA	Intergenic	Intergenic	117498	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	6.515	nan	0.406	5.678	4.877	3.268	6.125	7.833	5.656	6.761	8.944	5.352	9.215	10.722	8.313	8.866	5.296	7.529	3.589	2.548	1.352	6.038	2.400	2.194	6.837
3819	chr13	5547882	5550275	+	0	NA	Intergenic	Intergenic	309014	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	3.368	0.576	0.563	2.604	3.275	1.491	2.936	5.123	4.908	3.430	6.004	3.642	2.963	3.616	4.314	3.330	1.455	4.725	1.005	0.590	0.410	0.837	0.525	0.569	1.405
2798	chr11	100912199	100929563	+	0	NA	intron (NM_213660, intron 1 of 23)	B1F1|SINE|Alu	18659	NM_213660	20848	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	6.159	nan	0.863	5.970	6.069	4.706	6.888	7.529	5.001	5.944	3.356	2.950	5.796	8.948	7.284	7.632	nan	8.341	1.436	nan	1.473	2.331	nan	nan	8.042
734	chr1	153190075	153194662	+	0	NA	Intergenic	Intergenic	-5921	NM_008485	16782	Mm.329272	NM_008485	ENSMUSG00000026479	Lamc2	AA589349	laminin, gamma 2	protein-coding	12.551	13.206	5.226	8.628	4.055	2.619	10.433	8.014	5.925	9.780	5.772	3.496	11.005	11.074	10.078	13.245	10.444	11.072	4.606	3.811	3.255	5.281	nan	4.252	10.909
13358	chr7	87167477	87175221	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-75300	NM_001285835	50490	Mm.31748	NM_015760	ENSMUSG00000030562	Nox4	AI648021	NADPH oxidase 4	protein-coding	11.339	15.831	7.073	10.267	6.809	4.342	10.423	11.706	6.819	12.088	8.409	4.930	9.243	12.594	9.389	nan	8.626	nan	3.880	3.640	3.367	nan	3.474	4.831	14.994
7724	chr19	34624776	34628829	+	0	NA	intron (NM_053217, intron 2 of 2)	RMER3D-int|LTR|ERVK	13941	NM_053217	112419	Mm.440727	NM_053217	ENSMUSG00000067297	Ifit1bl2	2010002M12Rik|AW412491|Ifit1b	interferon induced protein with tetratricopeptide repeats 1B like 2	protein-coding	6.231	4.526	1.690	4.292	3.062	1.518	4.011	2.778	4.255	4.192	3.131	1.348	3.429	3.691	3.956	5.124	5.767	7.808	1.872	2.130	1.717	3.513	3.221	1.991	7.318
14976	chr9	41387678	41394123	+	0	NA	intron (NR_131928, intron 1 of 4)	intron (NR_131928, intron 1 of 4)	14374	NR_131928	73144	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	1.214	1.133	0.810	1.269	0.746	0.637	2.751	0.602	2.129	2.011	6.581	0.971	1.771	5.683	3.362	0.872	nan	0.773	nan	0.960	1.166	0.773	0.694	0.642	0.607
13411	chr7	91753041	91755407	+	0	NA	intron (NM_011807, intron 3 of 22)	intron (NM_011807, intron 3 of 22)	-308170	NM_001243046	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	7.032	7.254	3.198	4.273	2.954	1.615	6.425	12.071	nan	4.927	5.170	2.256	6.860	8.063	5.001	8.317	6.086	5.693	4.059	3.293	2.203	nan	3.776	3.715	7.560
2621	chr11	88769596	88771743	+	0	NA	Intergenic	Intergenic	52026	NR_038058	193280	Mm.396842	NR_038058		C030037D09Rik	9330160M04	RIKEN cDNA C030037D09 gene	ncRNA	3.783	0.955	0.478	nan	2.596	2.541	6.889	4.552	3.492	4.863	1.055	1.094	3.918	6.779	5.613	5.127	4.633	3.286	0.979	1.879	2.124	nan	1.587	1.834	nan
11091	chr5	28784443	28793624	+	0	NA	Intergenic	Intergenic	-321932	NM_009170	20423	Mm.57202	NM_009170	ENSMUSG00000002633	Shh	9530036O11Rik|Dsh|Hhg1|Hx|Hxl3|M100081	sonic hedgehog	protein-coding	6.071	0.475	0.178	5.009	1.570	1.041	9.939	5.294	5.186	10.576	0.395	0.676	7.645	8.536	10.560	10.045	6.071	9.081	0.460	0.318	0.375	0.542	0.426	0.492	15.726
9890	chr3	154324945	154327560	+	0	NA	intron (NM_010713, intron 3 of 8)	intron (NM_010713, intron 3 of 8)	4308	NM_010713	16875	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	0.390	1.230	0.648	0.891	0.219	0.115	0.317	0.453	0.277	0.313	0.619	0.449	0.195	0.402	0.428	0.372	0.418	0.474	5.395	3.162	2.316	6.661	5.674	4.501	0.541
15001	chr9	43594966	43597226	+	0	NA	Intergenic	Intergenic	-148480	NM_021424	58235	Mm.335096	NM_021424	ENSMUSG00000032012	Nectin1	AI835281|AW549174|Cd111|HIgR|HveC|PRR|PRR1|Pvrl1|nectin-1	nectin cell adhesion molecule 1	protein-coding	2.779	1.026	0.300	1.521	0.858	0.477	1.263	2.560	0.701	0.778	5.883	2.412	1.109	1.143	nan	2.102	1.304	1.935	1.565	0.806	1.194	nan	0.795	0.777	5.427
13293	chr7	75161663	75163087	+	0	NA	intron (NM_001109753, intron 2 of 12)	IAPEz-int|LTR|ERVK	132164	NR_131122	75205	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	-	RIKEN cDNA 4930533N22 gene	ncRNA	2.889	0.525	0.097	1.382	1.261	0.036	3.286	2.024	1.383	1.634	2.318	0.932	3.915	3.292	2.645	1.751	2.936	3.299	0.860	0.516	0.688	0.993	0.334	0.521	2.522
6736	chr17	53717747	53724370	+	0	NA	intron (NR_073205, intron 1 of 7)	Lx5c|LINE|L1	4549	NR_073205	211496	Mm.251553	NM_177599	ENSMUSG00000062036	4932415M13Rik	-	RIKEN cDNA 4932415M13 gene	ncRNA	6.409	nan	1.583	4.306	7.054	6.399	9.523	4.719	3.448	3.797	1.952	2.265	4.869	6.554	5.109	4.576	7.291	3.799	1.088	1.371	1.529	1.354	0.733	0.813	7.400
7543	chr19	9138749	9149620	+	0	NA	Intergenic	RMER5|LTR|ERV1	-8618	NM_025610	66514	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	4.533	7.432	3.912	3.863	2.631	1.194	2.842	4.320	nan	3.048	6.718	4.335	2.148	4.087	3.018	nan	3.074	4.186	1.894	3.253	1.997	3.501	3.663	2.961	3.731
11235	chr5	53437257	53451639	+	0	NA	Intergenic	Intergenic	-111331	NM_001080928	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	6.968	0.606	0.434	5.365	3.059	1.713	8.094	5.581	7.752	11.207	2.228	1.000	7.960	10.235	9.589	10.726	6.398	10.424	0.960	0.915	0.682	1.671	0.527	0.567	10.426
2524	chr11	79333913	79338368	+	0	NA	Intergenic	Intergenic	-3752	NM_010897	18015	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	3.967	9.976	6.929	3.549	1.934	1.479	1.376	1.603	3.023	2.322	2.029	1.330	1.550	1.838	nan	2.075	2.561	2.478	1.460	2.592	nan	0.809	0.514	0.867	1.585
14623	chr8	114621571	114622747	+	0	NA	intron (NM_019573, intron 5 of 8)	intron (NM_019573, intron 5 of 8)	182507	NM_019573	80707	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	4.031	0.788	0.189	2.212	1.282	0.573	0.939	4.350	2.039	3.570	0.428	0.339	3.394	4.423	2.426	4.438	2.356	4.139	1.540	1.236	1.116	3.213	1.083	0.660	4.376
12363	chr6	83581388	83583047	+	0	NA	intron (NR_078345, intron 5 of 7)	intron (NR_078345, intron 5 of 7)	-9713	NM_024239	70527	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	1.834	0.664	0.599	nan	0.395	0.297	2.242	0.773	1.871	3.722	1.061	0.364	1.958	3.848	2.843	2.389	1.556	nan	nan	0.574	0.074	0.404	0.294	0.045	1.519
9917	chr4	8831604	8844880	+	0	NA	intron (NM_001277149, intron 15 of 37)	(TTTTG)n|Simple_repeat|Simple_repeat	147836	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	2.708	7.736	3.547	2.851	1.891	1.098	0.948	nan	1.507	2.205	3.035	1.170	1.080	1.741	1.635	1.426	1.229	1.495	4.485	nan	3.496	8.406	4.518	3.683	1.842
1471	chr10	79226100	79230962	+	0	NA	Intergenic	Lx2A|LINE|L1	-19246	NM_175936	216144	Mm.246574	NM_175936	ENSMUSG00000055515	Vmn2r81	EC1-V2R|EC1-VR2|V2rf2	vomeronasal 2, receptor 81	protein-coding	3.743	4.535	1.274	nan	2.087	1.338	2.850	3.131	2.226	4.722	3.663	1.607	2.222	3.436	nan	3.717	2.616	3.334	nan	2.403	2.693	5.042	2.534	2.987	6.473
5806	chr16	13215960	13217805	+	0	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	-39599	NM_001122667	239719	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	ENSMUSG00000075401|Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	2.793	0.813	0.605	2.323	1.161	0.445	1.234	2.030	3.090	3.709	0.691	0.426	3.639	5.211	2.502	4.106	1.919	3.287	1.897	0.670	0.695	2.530	0.960	0.444	2.759
15392	chr9	95745454	95746861	+	0	NA	intron (NM_001311123, intron 1 of 11)	MER67A|LTR|ERV1	4201	NM_001311123	22063	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	4.358	1.879	1.055	4.152	2.143	1.358	4.336	5.023	3.270	6.583	1.768	2.786	4.615	6.392	5.387	5.704	2.575	6.382	2.993	1.354	0.949	2.632	2.440	2.545	7.300
5340	chr15	75696543	75701269	+	0	NA	Intergenic	Intergenic	-5382	NM_001163465	14787	Mm.57052	NM_008164	ENSMUSG00000022580	Rhpn1	BB023497|Grbp|Rhophilin|mKIAA1929	rhophilin, Rho GTPase binding protein 1	protein-coding	nan	nan	0.470	nan	0.444	0.502	nan	6.577	1.515	nan	nan	1.936	1.763	nan	2.133	1.912	nan	1.758	0.688	0.413	0.624	nan	0.620	0.531	1.134
12302	chr6	71079870	71081875	+	0	NA	Intergenic	B3|SINE|B2	63508	NM_001033929	232078	Mm.37547	NM_178413	ENSMUSG00000054474	Thnsl2	BC051244|TSH2	threonine synthase-like 2 (bacterial)	protein-coding	4.419	0.594	0.222	2.045	2.178	1.539	5.635	5.599	2.698	4.215	0.740	1.011	5.714	5.089	6.707	8.761	5.938	5.278	1.621	0.573	0.244	1.155	1.388	1.485	4.244
12482	chr6	93182385	93183693	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	242457	NR_015530	330385	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	5.363	0.880	0.355	4.129	1.995	0.768	5.867	4.345	3.948	3.688	0.802	0.538	6.804	4.028	7.731	10.492	4.380	7.185	nan	nan	0.281	1.485	0.134	0.107	5.617
12062	chr6	15676066	15683509	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	-40874	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	7.109	nan	3.636	4.107	6.756	4.422	3.533	3.719	4.851	4.962	2.253	1.692	4.276	5.992	3.727	5.981	5.125	5.102	1.003	2.126	1.120	0.950	1.304	0.817	2.868
13092	chr7	30906719	30907688	+	0	NA	intron (NM_010758, intron 7 of 12)	B3|SINE|B2	7118	NM_001346089	17136	Mm.241355	NM_010758	ENSMUSG00000036634	Mag	Gma|siglec-4a	myelin-associated glycoprotein	protein-coding	4.549	12.596	4.187	5.326	3.100	1.806	2.365	2.266	1.599	5.013	2.673	1.677	2.360	3.474	3.772	4.310	3.108	3.514	6.597	6.093	4.408	6.571	9.124	5.827	6.570
9659	chr3	105627679	105630282	+	0	NA	intron (NM_001039347, intron 2 of 6)	MTB_Mm|LTR|ERVL-MaLR	58591	NM_017397	53975	Mm.272826	NM_017397	ENSMUSG00000027905	Ddx20	GEMIN3|dp103	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	protein-coding	3.764	5.423	4.173	4.115	4.449	2.361	3.023	1.442	2.644	3.560	1.046	1.165	3.715	4.830	3.124	2.924	1.926	3.543	1.097	1.251	0.826	0.757	0.737	0.344	3.189
3379	chr12	70522969	70526737	+	0	NA	intron (NR_037248, intron 2 of 4)	intron (NR_037248, intron 2 of 4)	71699	NM_028339	72736	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	7.140	3.979	1.531	4.572	4.105	2.756	7.790	6.030	5.744	6.244	7.743	5.665	7.777	9.742	8.500	nan	7.054	7.080	2.036	1.624	1.380	2.870	1.183	1.118	8.528
373	chr1	85258436	85263024	+	0	NA	intron (NM_175219, intron 2 of 7)	intron (NM_175219, intron 2 of 7)	9836	NM_175219	620078	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik|OTTMUSG00000029174	RIKEN cDNA C130026I21 gene	protein-coding	1.063	11.600	11.799	0.763	0.384	0.116	0.819	0.749	0.669	0.594	0.647	0.505	0.513	0.465	0.561	1.358	1.405	0.710	1.147	1.115	1.213	nan	0.858	0.519	0.561
12711	chr6	125522533	125526614	+	0	NA	Intergenic	(CCTG)n|Simple_repeat|Simple_repeat	-28375	NM_011708	22371	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	4.354	nan	1.166	3.395	1.724	0.812	4.996	6.266	3.081	3.044	1.953	1.472	4.495	4.675	7.180	7.963	3.718	6.532	10.589	4.655	2.441	13.039	6.814	4.440	6.156
2078	chr11	33559506	33562004	+	0	NA	intron (NM_146017, intron 6 of 9)	intron (NM_146017, intron 6 of 9)	18202	NM_146017	216643	Mm.99989	NM_146017	ENSMUSG00000020159	Gabrp	-	gamma-aminobutyric acid (GABA) A receptor, pi	protein-coding	4.824	0.635	0.300	2.461	2.872	1.019	1.053	5.502	4.466	5.385	1.859	2.014	7.114	6.521	4.478	1.882	3.276	4.935	0.698	0.204	0.131	0.502	0.246	0.077	2.607
10475	chr4	120684298	120689824	+	0	NA	Intergenic	ORR1F|LTR|ERVL-MaLR	20498	NM_019563	56222	Mm.272646	NM_019563	ENSMUSG00000070803	Cited4	MRG-2|Mrg2	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	protein-coding	3.901	10.869	5.819	3.284	2.604	1.836	1.971	3.090	2.360	3.958	2.092	1.203	1.922	2.570	2.183	nan	1.657	3.124	3.207	2.521	2.192	2.415	2.814	2.153	4.040
5359	chr15	76443575	76450903	+	0	NA	exon (NM_175457, exon 35 of 44)	exon (NM_175457, exon 35 of 44)	-10199	NM_198885	20289	Mm.322821	NM_198885	ENSMUSG00000034161	Scx	BB114693|Bhlha41|Scl	scleraxis	protein-coding	7.388	5.665	2.041	4.716	3.563	2.350	11.222	14.052	3.609	nan	5.250	3.172	10.383	7.765	8.707	7.504	6.828	7.343	1.462	0.917	1.110	nan	0.763	0.842	9.818
5609	chr15	97569356	97576259	+	0	NA	Intergenic	L1MEc|LINE|L1	133015	NM_028003	71919	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0.779	15.938	6.570	1.546	0.487	0.267	0.953	1.040	0.770	0.948	0.802	0.336	0.800	1.086	1.077	nan	0.744	1.432	0.733	0.581	0.692	0.978	0.387	0.333	1.309
14286	chr8	72487541	72488444	+	0	NA	intron (NM_177766, intron 4 of 5)	intron (NM_177766, intron 4 of 5)	4622	NM_177766	270066	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	3.969	1.629	0.757	1.830	1.078	0.707	1.539	2.365	1.918	2.298	0.615	0.960	1.669	3.443	2.213	2.617	2.213	4.882	nan	1.069	0.295	1.252	0.714	0.257	4.161
7319	chr18	64756655	64761159	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	-97907	NM_001001488	54670	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	5.032	0.828	0.696	1.596	1.016	0.572	11.249	6.976	1.801	1.375	4.347	3.148	6.016	4.934	4.499	2.697	3.021	2.952	1.345	1.485	1.215	0.877	1.626	1.225	1.461
8403	chr2	84262064	84268376	+	0	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	160046	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	4.018	2.015	1.242	4.519	1.235	0.509	1.114	1.794	3.210	2.674	1.155	0.938	1.419	1.908	1.625	2.211	1.888	4.205	0.911	0.749	0.428	0.560	0.344	0.200	1.276
6148	chr16	62752702	62756889	+	0	NA	intron (NM_178925, intron 5 of 5)	intron (NM_178925, intron 5 of 5)	31921	NM_178925	106338	Mm.26321	NM_178925	ENSMUSG00000050312	Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding	5.461	0.565	0.443	1.930	0.688	0.549	5.152	3.541	3.274	2.419	0.462	0.730	5.178	2.454	4.835	6.813	5.513	6.079	nan	0.524	0.403	0.478	0.413	0.355	3.745
14636	chr8	119466701	119468514	+	0	NA	exon (NM_054095, exon 9 of 13)	exon (NM_054095, exon 9 of 13)	20888	NM_054095	117148	Mm.356184	NM_054095	ENSMUSG00000031837	Necab2	Efcbp2	N-terminal EF-hand calcium binding protein 2	protein-coding	4.541	6.968	2.031	5.042	1.389	0.973	3.726	5.394	3.037	6.520	2.313	2.105	4.877	3.583	5.302	6.955	3.284	6.242	2.394	1.002	1.900	3.571	1.156	1.887	10.105
1309	chr10	58317013	58319713	+	0	NA	Intergenic	Lx3B|LINE|L1	-5103	NM_026148	110829	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	2.774	0.823	0.437	1.982	1.053	0.343	2.866	1.125	1.648	2.708	0.424	0.301	2.381	2.761	3.433	4.932	4.204	4.258	nan	0.239	0.316	0.887	0.330	0.431	5.682
1752	chr10	115972965	115974968	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-44397	NM_011217	19279	Mm.336316	NM_011217	ENSMUSG00000020151	Ptprr	Gmcp1|PTP-SL|PTPBR7|RPTPRR|mPTP213	protein tyrosine phosphatase, receptor type, R	protein-coding	4.432	1.179	1.180	2.407	2.354	1.237	1.965	3.008	3.586	3.403	5.319	1.757	2.703	4.947	2.817	2.947	3.378	5.321	0.815	0.614	0.312	0.696	0.544	0.055	2.664
4508	chr14	21458762	21460896	+	0	NA	Intergenic	Intergenic	-39941	NM_001205241	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	10.634	11.900	5.922	8.680	5.558	3.938	9.529	8.732	4.978	7.705	6.695	3.773	6.138	10.632	8.414	8.775	7.006	7.614	6.790	6.816	4.920	6.333	8.788	7.634	12.164
15425	chr9	100479682	100485390	+	0	NA	intron (NM_001033543, intron 1 of 6)	intron (NM_001033543, intron 1 of 6)	3937	NM_001033543	213208	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	6.592	0.512	0.684	3.320	2.942	1.524	5.967	8.909	5.704	5.637	1.649	3.670	7.599	7.321	8.274	8.295	5.908	7.639	8.957	5.202	3.943	6.299	7.195	6.345	9.671
2874	chr11	105407200	105415481	+	0	NA	intron (NM_172568, intron 4 of 11)	intron (NM_172568, intron 4 of 11)	45395	NM_172568	632687	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|OTTMUSG00000002847|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	1.048	0.463	0.415	nan	0.860	0.298	1.319	1.615	nan	nan	0.441	0.583	1.681	nan	1.944	2.417	1.877	nan	2.688	2.351	1.435	nan	2.394	1.554	1.450
5352	chr15	76043358	76044716	+	0	NA	Intergenic	Intergenic	20851	NR_105917	102466772		NR_105917	ENSMUSG00000098451	Mir6952	Gm27948|mmu-mir-6952	microRNA 6952	ncRNA	1.935	nan	0.873	1.796	2.317	3.370	5.318	6.532	2.346	nan	nan	2.329	5.548	4.423	2.171	2.417	2.798	2.276	2.856	1.270	1.213	2.392	2.558	1.990	1.607
13174	chr7	52375722	52380879	+	0	NA	Intergenic	L1_Mur2|LINE|L1	-362584	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	4.690	10.895	2.692	6.275	2.021	1.374	4.615	5.156	3.229	4.101	3.515	1.915	4.152	4.384	6.190	6.321	3.905	6.108	2.767	1.799	2.117	3.644	1.450	1.187	7.188
8925	chr2	160548572	160553753	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	-94735	NM_009408	21969	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	5.473	0.998	0.449	4.221	3.776	3.590	5.491	5.483	nan	4.337	2.226	1.707	6.093	6.350	6.703	8.473	6.181	5.679	nan	0.674	0.639	1.162	0.620	0.436	7.391
6918	chr17	84663751	84668315	+	0	NA	intron (NM_031884, intron 10 of 12)	intron (NM_031884, intron 10 of 12)	-10269	NM_001286005	67470	Mm.26581	NM_026180	ENSMUSG00000024254	Abcg8	1300003C16Rik|AI114946|sterolin-2	ATP-binding cassette, sub-family G (WHITE), member 8	protein-coding	4.198	3.131	1.105	5.248	2.835	1.511	4.615	4.246	nan	4.123	4.388	2.253	6.365	6.270	5.515	6.378	5.305	5.774	1.555	1.660	1.078	2.779	0.650	0.420	7.554
1622	chr10	94007403	94010403	+	0	NA	intron (NM_001304572, intron 1 of 11)	(CA)n|Simple_repeat|Simple_repeat	26839	NM_001304720	215008	Mm.124177	NM_172538	ENSMUSG00000036099	Vezt	A630071D13Rik|AI848282	vezatin, adherens junctions transmembrane protein	protein-coding	7.044	7.197	2.177	7.229	4.912	2.336	4.270	6.962	5.331	5.330	nan	3.462	4.586	6.722	6.081	7.928	4.593	6.523	nan	0.965	1.143	nan	1.706	1.166	8.753
13211	chr7	54086068	54087299	+	0	NA	Intergenic	L1Md_A|LINE|L1	-194794	NR_105746	102466619		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	5.324	4.606	1.817	3.944	2.982	1.091	2.794	5.676	3.072	3.654	1.611	1.632	4.311	4.572	4.380	5.794	3.979	4.998	2.911	1.456	1.212	1.244	1.553	1.099	4.612
8060	chr2	28177339	28183080	+	0	NA	Intergenic	RLTR24|LTR|ERV1	-12884	NM_001038613	56177	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0.341	0.529	0.314	0.316	0.133	0.042	0.201	0.298	nan	0.315	0.213	0.142	0.142	0.178	0.245	0.667	0.344	0.333	2.616	2.650	1.738	6.592	1.838	1.272	0.580
15034	chr9	45238393	45241264	+	0	NA	intron (NM_001198971, intron 1 of 4)	intron (NM_001198971, intron 1 of 4)	26879	NR_106054	102466803		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.873	0.530	0.379	0.337	0.067	0.084	0.185	0.189	0.251	0.488	0.118	0.296	0.096	0.123	nan	nan	0.219	0.427	9.586	3.746	3.618	8.001	5.267	5.381	nan
11462	chr5	96648121	96652287	+	0	NA	intron (NM_175473, intron 26 of 73)	intron (NM_175473, intron 26 of 73)	-143181	NM_013470	11745	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	5.743	8.304	4.530	2.351	2.055	1.040	4.226	5.186	2.250	2.151	3.373	1.939	5.356	5.862	6.958	3.027	4.214	3.235	6.549	4.221	2.357	4.634	5.421	5.019	3.239
3685	chr12	105230179	105231761	+	0	NA	Intergenic	L1VL2|LINE|L1	-8233	NM_001289468	21432	Mm.18154	NM_009337	ENSMUSG00000041359	Tcl1	Tcl1a	T cell lymphoma breakpoint 1	protein-coding	2.739	1.244	0.455	nan	0.489	0.076	6.973	4.058	nan	nan	1.759	0.563	3.131	4.586	6.000	1.601	1.182	0.989	0.670	0.980	0.406	0.770	0.343	0.197	2.836
15519	chr9	110033760	110035280	+	0	NA	exon (NM_008633, exon 7 of 19)	exon (NM_008633, exon 7 of 19)	-17501	NM_001311163	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	7.218	13.719	3.516	6.951	2.362	1.414	6.390	5.598	nan	9.396	5.250	3.740	5.954	7.147	7.382	9.059	3.390	6.428	6.454	2.755	3.637	8.774	4.473	5.785	12.275
4457	chr14	8794604	8796520	+	0	NA	Intergenic	Lx5c|LINE|L1	129172	NR_045968	74859	Mm.84041	NR_045968	ENSMUSG00000097898	4930455B14Rik	1700027C12Rik	RIKEN cDNA 4930455B14 gene	ncRNA	1.947	1.587	0.589	1.755	1.427	0.512	3.634	7.652	2.640	2.212	6.786	5.465	3.924	4.183	3.852	4.162	1.262	2.548	1.558	0.494	0.478	1.733	0.390	0.265	3.631
13002	chr7	25342474	25347630	+	0	NA	intron (NM_001160400, intron 23 of 40)	PB1D7|SINE|Alu	24672	NM_001081375	72383	Mm.34382	NM_028219	ENSMUSG00000063651	Cnfn	2210418J09Rik	cornifelin	protein-coding	0.497	8.975	5.008	0.500	0.346	0.144	0.417	0.700	0.482	0.434	1.031	0.654	0.269	0.425	0.481	0.686	0.452	0.691	0.466	0.501	0.381	0.656	0.424	0.356	0.748
3605	chr12	88271539	88280577	+	0	NA	Intergenic	Intergenic	-1561	NM_001013824	435337	Mm.441366	NM_001013824	ENSMUSG00000079029	Gm5662	EG435337	predicted gene 5662	protein-coding	5.114	1.296	0.732	7.177	3.764	2.718	2.737	3.086	4.054	3.956	1.670	1.042	3.777	6.238	3.253	4.699	3.433	4.690	0.980	1.155	1.154	1.160	0.830	0.935	nan
975	chr1	184210831	184213933	+	0	NA	Intergenic	B3A|SINE|B2	177921	NM_022019	63953	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	8.282	8.050	3.401	7.026	3.687	2.282	4.978	7.767	4.375	9.748	6.140	2.778	7.689	8.310	7.393	10.639	6.186	7.576	2.468	2.143	1.379	4.010	2.037	2.018	10.188
12524	chr6	98947588	98953329	+	0	NA	intron (NM_001347345, intron 13 of 19)	intron (NM_001347345, intron 13 of 19)	77840	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	4.356	1.711	1.018	3.970	1.677	0.663	2.576	2.627	2.407	2.327	1.549	0.680	2.766	3.025	3.630	4.361	3.941	3.877	nan	nan	0.661	4.356	1.107	0.566	3.649
5753	chr16	4726056	4731888	+	0	NA	intron (NM_001136066, intron 1 of 5)	intron (NM_001136066, intron 1 of 5)	2611	NM_001136066	15369	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	6.478	4.673	2.203	6.035	5.355	4.146	4.162	5.407	5.035	6.611	3.351	2.077	5.522	6.541	4.858	6.478	5.231	6.819	1.983	1.709	1.992	2.097	1.517	1.950	7.600
9820	chr3	135180659	135185928	+	0	NA	Intergenic	LTRIS_Mus|LTR|ERV1	-29270	NM_173762	229841	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	3.836	nan	1.105	3.988	9.426	7.514	nan	3.601	2.267	2.625	1.936	1.817	3.480	6.060	3.228	3.001	3.412	3.987	1.047	1.092	1.203	0.699	1.558	1.156	3.336
7901	chr19	57269732	57273023	+	0	NA	Intergenic	Lx8|LINE|L1	-2583	NR_045319	78120	Mm.445892	NR_045319		4930449E18Rik	-	RIKEN cDNA 4930449E18 gene	ncRNA	4.746	nan	0.532	6.825	2.383	0.862	1.137	nan	3.733	4.163	1.518	1.738	1.267	2.936	2.258	3.421	1.768	5.501	1.906	1.118	1.474	3.683	3.498	2.037	4.901
11317	chr5	67066495	67068266	+	0	NA	Intergenic	RMER6A|LTR|ERVK	31746	NM_008888	18935	Mm.62505	NM_008888	ENSMUSG00000012520	Phox2b	Dilp1|NBPhox|Pmx2b|Px2b	paired-like homeobox 2b	protein-coding	0.748	0.658	0.494	1.107	0.797	0.440	1.060	0.426	0.607	0.988	0.321	0.055	0.412	0.699	0.523	0.997	0.314	1.268	6.096	3.226	2.333	5.108	3.859	3.893	1.055
14487	chr8	96876529	96890077	+	0	NA	Intergenic	Lx2|LINE|L1	-337330	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	6.314	13.755	5.239	6.305	5.014	3.051	4.237	12.670	5.825	6.941	6.728	3.417	7.824	10.483	6.226	6.684	4.555	7.027	0.979	1.361	1.041	1.494	1.298	1.013	6.640
12239	chr6	52139897	52142493	+	0	NA	Intergenic	PB1D10|SINE|Alu	17122	NM_010449	15394	Mm.197	NM_010449	ENSMUSG00000029844	Hoxa1	ERA1|Hox-1.6	homeobox A1	protein-coding	3.152	5.579	1.326	6.651	2.459	1.339	1.164	0.782	1.952	4.408	1.489	0.774	0.988	2.174	1.865	2.601	1.478	nan	nan	0.674	1.015	0.910	0.827	0.727	3.019
3709	chr12	109508248	109518130	+	0	NA	Intergenic	Intergenic	-27807	NR_027652	17263	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	2.629	0.978	0.402	nan	1.208	0.678	2.140	nan	nan	nan	1.875	1.110	1.861	nan	2.777	2.548	1.557	3.246	4.075	2.038	1.829	5.606	2.887	3.578	5.180
14949	chr9	32517092	32519122	+	0	NA	intron (NM_008026, intron 1 of 8)	intron (NM_008026, intron 1 of 8)	23345	NM_008026	14247	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	4.916	12.034	3.210	5.916	2.326	0.954	3.379	3.001	4.809	4.753	6.592	4.020	2.899	4.591	4.183	4.721	2.005	5.189	2.269	1.735	0.695	2.971	2.532	1.443	4.349
10914	chr4	149821833	149842342	+	0	NA	Intergenic	MER81|DNA|hAT-Blackjack	-57820	NM_027460	70556	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	1.995	nan	0.920	1.865	2.475	1.651	1.550	1.633	1.981	2.132	1.451	1.167	1.447	2.005	1.721	1.754	1.219	2.244	6.584	2.064	1.536	7.222	3.258	2.568	1.720
3113	chr11	120365295	120373275	+	0	NA	TTS (NM_027980)	TTS (NM_027980)	7751	NM_172802	238021	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	5.730	nan	1.122	4.853	6.858	5.106	6.912	nan	5.224	6.174	5.361	4.284	6.398	9.576	6.228	6.789	6.409	6.339	0.885	nan	1.470	1.093	1.188	1.276	6.049
15012	chr9	44169075	44170184	+	0	NA	intron (NM_007619, intron 3 of 15)	PB1D9|SINE|Alu	34971	NM_023061	84004	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	7.250	7.147	2.598	7.714	3.812	2.576	4.757	5.481	4.526	6.180	4.091	3.581	5.041	5.956	nan	7.309	4.471	6.704	3.556	1.757	2.136	3.797	2.660	3.782	9.827
10432	chr4	118087705	118094840	+	0	NA	intron (NM_009176, intron 2 of 11)	L1ME1|LINE|L1	43674	NM_001285520	20441	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	3.803	0.810	0.460	3.151	3.947	2.061	3.134	4.160	4.065	5.472	0.955	0.503	4.722	6.861	4.688	5.813	3.565	4.355	0.591	0.820	0.533	0.630	0.552	0.521	5.901
1893	chr11	3576306	3578252	+	0	NA	Intergenic	Intergenic	-37987	NM_001284428	29856	Mm.188516	NM_013870	ENSMUSG00000020439	Smtn	smsmo	smoothelin	protein-coding	2.549	2.242	1.002	1.611	0.772	0.635	1.779	2.164	1.632	1.943	1.944	0.499	2.656	4.349	3.446	2.639	2.690	3.428	0.736	nan	0.204	0.552	0.271	0.109	3.458
9375	chr3	68570318	68571409	+	0	NA	intron (NM_001113419, intron 5 of 10)	intron (NM_001113419, intron 5 of 10)	-1505	NM_013928	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	2.728	0.425	0.570	0.933	1.049	0.441	1.338	1.965	1.788	1.186	0.267	0.315	1.618	3.405	1.693	nan	1.660	1.414	0.837	1.189	1.052	1.329	0.818	0.844	1.726
9300	chr3	52100047	52103056	+	0	NA	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	3455	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding	2.675	1.880	0.979	1.507	3.180	2.002	3.294	3.691	1.972	2.355	1.376	2.877	3.154	3.260	2.575	2.117	2.126	2.794	2.822	2.975	1.022	1.970	3.327	1.798	2.077
11425	chr5	91527598	91530465	+	0	NA	intron (NM_145562, intron 1 of 3)	intron (NM_145562, intron 1 of 3)	11331	NM_145562	231440	Mm.5002	NM_145562	ENSMUSG00000034981	Parm1	2210012L08Rik|9130213B05Rik|W91666	prostate androgen-regulated mucin-like protein 1	protein-coding	0.588	0.499	0.410	0.325	0.399	0.091	0.554	1.177	1.985	1.113	2.464	4.743	0.727	0.666	0.821	0.742	0.737	1.326	0.570	0.240	0.257	0.315	0.183	0.067	0.456
9461	chr3	89054619	89056566	+	0	NA	intron (NM_138679, intron 15 of 26)	B3|SINE|B2	34439	NM_001083808	72296	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	6.491	9.915	1.840	8.046	2.063	1.102	7.033	8.063	5.433	5.284	1.702	2.166	9.947	6.540	7.995	8.494	4.668	9.018	2.963	1.585	0.692	3.831	3.348	1.640	10.518
3572	chr12	86687793	86692836	+	0	NA	intron (NM_177354, intron 5 of 6)	intron (NM_177354, intron 5 of 6)	11614	NM_177354	238328	Mm.216101	NM_177354	ENSMUSG00000021256	Vash1	AI834978|D930046M13Rik|G630009D10Rik	vasohibin 1	protein-coding	4.665	1.816	0.931	3.829	1.992	1.443	1.773	2.904	3.901	2.627	2.609	2.245	2.410	2.962	3.247	4.638	3.058	4.688	1.114	0.822	0.578	0.833	0.498	0.342	nan
534	chr1	122252929	122254785	+	0	NA	Intergenic	B4A|SINE|B4	-685877	NM_025860	66942	Mm.44219	NM_025860	ENSMUSG00000001674	Ddx18	2310005B10Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding	2.378	1.167	0.726	1.965	0.669	0.066	0.393	0.597	1.844	1.841	0.936	0.124	1.780	2.026	3.072	2.312	4.022	2.620	0.424	0.157	0.264	0.966	0.329	0.256	6.038
746	chr1	154470492	154472688	+	0	NA	exon (NM_009782, exon 21 of 47)	exon (NM_009782, exon 21 of 47)	-214684	NR_040629	78112	Mm.401935	NR_040629	ENSMUSG00000099933	4930452N14Rik	-	RIKEN cDNA 4930452N14 gene	ncRNA	7.188	3.526	1.155	6.630	2.637	1.739	1.832	3.775	3.410	4.838	1.313	1.463	1.465	2.626	3.526	3.648	2.128	5.935	1.983	1.158	1.353	2.491	nan	1.633	4.360
14480	chr8	96559322	96562142	+	0	NA	Intergenic	Intergenic	-14759	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	6.239	6.351	2.508	5.631	2.861	0.880	4.608	7.211	3.718	4.476	4.133	2.293	5.656	6.613	7.006	8.868	6.042	6.023	4.095	3.325	1.729	7.040	3.698	2.980	7.259
14398	chr8	86217445	86218881	+	0	NA	Intergenic	L1Md_T|LINE|L1	348427	NM_172912	244562	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding	4.993	2.652	0.885	4.202	2.527	1.623	1.449	2.994	3.004	3.388	3.040	2.476	2.007	2.986	2.414	3.274	1.984	4.253	nan	1.597	1.296	1.977	1.528	1.107	3.831
9061	chr2	170030105	170031865	+	0	NA	Intergenic	MTE2a|LTR|ERVL-MaLR	39686	NR_033634	100043910	Mm.468546	NR_033632	ENSMUSG00000097065	A630075F10Rik	4831414D02|Gm4722	RIKEN cDNA A630075F10 gene	ncRNA	12.948	7.830	4.934	6.565	12.557	8.040	11.301	11.970	7.572	6.581	6.140	4.065	10.829	12.255	8.353	10.994	12.716	8.616	5.244	4.440	5.518	4.506	4.702	5.098	9.480
5701	chr15	101518051	101519901	+	0	NA	Intergenic	L2a|LINE|L2	13844	NM_008474	16680	Mm.25292	NM_008474	ENSMUSG00000044294	Krt84	AV235125|HRb-1|Krt2-16|Krt2-3	keratin 84	protein-coding	3.207	0.382	0.490	0.518	1.523	0.397	1.262	4.130	1.176	1.193	6.096	1.927	0.740	0.655	0.999	2.433	1.670	1.711	1.101	1.088	0.662	0.625	0.899	0.501	0.640
11558	chr5	111198529	111200495	+	0	NA	intron (NM_001267622, intron 6 of 22)	intron (NM_001267622, intron 6 of 22)	-131185	NM_001301644	56305	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	5.997	9.565	3.641	8.102	5.452	5.444	6.855	4.833	4.067	9.337	4.834	3.164	4.675	7.097	6.270	7.483	4.839	6.015	4.556	2.606	5.469	5.289	4.522	7.921	9.958
8478	chr2	101970660	101974826	+	0	NA	intron (NM_001290784, intron 4 of 5)	intron (NM_001290784, intron 4 of 5)	86481	NM_029635	76501	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	5.545	1.542	0.730	3.198	1.457	0.675	5.566	7.107	4.266	4.550	0.403	0.723	7.436	5.722	5.500	9.658	6.637	8.327	1.985	1.489	0.502	1.668	1.666	1.556	8.093
8184	chr2	35299589	35304078	+	0	NA	intron (NM_001206368, intron 11 of 16)	(TCCA)n|Simple_repeat|Simple_repeat	19453	NM_146120	227753	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	6.718	15.009	4.860	5.646	2.021	0.794	2.271	3.637	3.700	4.380	6.747	3.574	2.260	4.030	3.852	4.334	1.836	4.121	1.840	1.215	0.601	2.192	0.587	0.317	5.546
7734	chr19	36203352	36204760	+	0	NA	Intergenic	MTA_Mm|LTR|ERVL-MaLR	-84212	NM_013468	107765	Mm.10279	NM_013468	ENSMUSG00000024803	Ankrd1	Alrp|CARP|Crap|MARP1	ankyrin repeat domain 1 (cardiac muscle)	protein-coding	3.301	2.102	0.700	3.202	1.362	1.078	2.023	2.890	1.540	1.382	6.083	1.592	2.147	4.484	3.209	1.381	nan	3.703	0.868	0.689	0.490	2.345	1.165	1.271	4.130
15570	chr9	118637887	118652699	+	0	NA	intron (NM_133721, intron 4 of 27)	B3A|SINE|B2	38584	NM_133721	104099	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	3.507	0.682	0.331	3.966	2.569	1.221	3.419	2.830	4.247	5.370	0.766	0.490	5.106	6.169	5.034	6.068	2.776	7.523	2.268	0.910	0.770	1.989	nan	1.258	8.257
151	chr1	43989877	43992605	+	0	NA	intron (NM_001310540, intron 24 of 28)	intron (NM_001310540, intron 24 of 28)	28765	NM_001013799	433294	Mm.123621	NM_001013799	ENSMUSG00000047343	Mettl21c	A530098C11Rik	methyltransferase like 21C	protein-coding	10.791	13.160	3.290	10.505	3.285	1.974	7.807	6.951	6.754	9.440	5.713	4.281	10.323	8.780	9.718	14.343	8.211	11.128	nan	2.131	2.011	5.791	2.081	2.098	12.019
3822	chr13	5662529	5664936	+	0	NA	Intergenic	Lx4B|LINE|L1	194360	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	2.776	0.516	0.379	1.665	5.466	3.809	2.751	1.899	2.483	1.730	1.093	1.154	1.495	2.922	1.868	1.219	1.045	2.914	1.140	1.519	0.682	0.360	1.899	1.388	1.095
13559	chr7	116749148	116761379	+	0	NA	Intergenic	L1_Mur3|LINE|L1	250894	NM_001130479	53322	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	5.919	1.358	0.531	5.678	4.286	2.672	5.900	7.275	3.560	4.053	3.745	2.367	6.742	6.783	5.918	6.090	5.550	5.653	1.778	1.443	1.024	1.821	2.471	1.996	6.125
11910	chr5	142913657	142921817	+	0	NA	Intergenic	MTC-int|LTR|ERVL-MaLR	-10983	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	4.557	5.528	1.548	6.489	2.616	1.512	4.689	4.036	3.539	3.914	4.566	2.907	3.758	5.266	5.068	5.205	2.596	5.249	1.256	1.326	1.383	2.369	nan	0.935	7.295
5347	chr15	75909941	75916051	+	0	NA	3' UTR (NM_178646, exon 1 of 1)	3' UTR (NM_178646, exon 1 of 1)	3261	NM_178646	105734	Mm.275583	NM_178646	ENSMUSG00000103906	Tigd5	AA409802|AA409995|AI666797	tigger transposable element derived 5	protein-coding	11.833	nan	2.016	7.159	5.711	4.053	12.229	15.068	5.703	8.804	4.004	2.600	11.522	11.662	8.590	8.652	11.873	8.242	3.396	2.237	2.508	nan	2.398	2.637	11.158
11909	chr5	142900136	142903257	+	0	NA	Intergenic	Intergenic	5058	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	7.934	3.328	1.025	8.746	4.296	2.229	5.247	6.756	5.987	6.842	5.727	3.799	4.453	7.972	7.856	8.847	4.453	7.649	4.266	2.347	2.119	7.311	2.232	1.673	12.761
10616	chr4	131951914	131955052	+	0	NA	intron (NM_001128606, intron 13 of 17)	intron (NM_001128606, intron 13 of 17)	31712	NM_001201367	623230	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	5.714	1.670	1.301	3.260	5.500	3.138	3.637	4.587	3.594	3.411	3.569	3.851	2.478	4.799	nan	3.591	2.684	4.572	1.387	1.695	1.426	1.340	1.071	1.169	3.088
10801	chr4	140244670	140246308	+	0	NA	intron (NM_198610, intron 1 of 9)	intron (NM_198610, intron 1 of 9)	1322	NM_198610	230868	Mm.298731	NM_198610	ENSMUSG00000040972	Igsf21	BC055811|Gm141	immunoglobulin superfamily, member 21	protein-coding	nan	3.952	3.522	1.108	2.002	1.240	3.298	1.381	nan	0.879	2.057	0.711	0.738	3.766	1.695	1.262	1.140	nan	0.840	0.724	0.689	0.743	nan	1.185	0.722
1952	chr11	6426555	6429661	+	0	NA	3' UTR (NM_029938, exon 5 of 5)	3' UTR (NM_029938, exon 5 of 5)	12238	NM_008907	268373	Mm.5246	NM_008907	ENSMUSG00000071866	Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding	8.302	12.310	6.388	5.227	4.953	4.397	7.353	7.234	6.777	5.843	6.246	5.469	5.596	5.694	7.130	9.309	7.548	7.506	3.588	nan	3.809	3.465	2.919	3.411	8.379
9978	chr4	35076905	35079321	+	0	NA	intron (NM_178061, intron 2 of 3)	intron (NM_178061, intron 2 of 3)	-73942	NM_199157	387510	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	4.082	3.337	1.852	3.125	2.736	1.133	2.866	2.928	3.097	3.984	1.242	1.101	3.995	3.900	4.367	5.336	2.817	nan	0.822	0.813	0.672	0.741	0.659	0.649	5.180
13432	chr7	97176539	97185990	+	0	NA	intron (NM_001162477, intron 1 of 9)	RSINE1|SINE|B4	99513	NM_010248	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	7.537	2.778	1.502	5.640	3.938	2.077	2.891	5.115	5.217	6.060	3.030	2.309	4.730	5.572	4.454	nan	3.998	5.330	nan	1.286	1.556	1.041	1.073	0.813	4.552
10635	chr4	132590302	132614825	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-36483	NM_210071	14050	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	3.337	2.042	0.713	3.746	1.842	1.221	4.487	5.380	2.286	3.335	3.150	1.379	3.627	4.509	nan	5.079	2.790	3.856	3.158	2.728	2.431	5.750	2.388	1.910	5.818
7831	chr19	46591005	46594565	+	0	NA	intron (NM_053196, intron 11 of 11)	intron (NM_053196, intron 11 of 11)	-6321	NM_001177812	226178	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	2.797	4.817	1.982	nan	3.450	2.418	3.363	4.465	2.023	2.807	3.547	2.340	2.388	4.808	3.591	3.500	3.826	nan	1.329	2.024	2.023	2.817	3.707	3.452	4.204
475	chr1	95697238	95703632	+	0	NA	TTS (NR_040479)	TTS (NR_040479)	16083	NR_040479	75381	Mm.417807	NR_040479	ENSMUSG00000100777	4930598F16Rik	-	RIKEN cDNA 4930598F16 gene	ncRNA	6.192	6.674	2.487	4.606	2.481	1.801	4.426	4.002	3.103	5.032	2.651	1.681	5.956	6.362	5.516	8.914	4.922	5.145	nan	1.799	1.649	nan	1.863	2.137	7.801
6032	chr16	34066290	34072921	+	0	NA	intron (NM_177357, intron 34 of 59)	intron (NM_177357, intron 34 of 59)	-102602	NM_009471	22247	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	3.806	1.632	1.050	2.444	2.426	1.625	4.281	3.636	2.775	3.395	0.474	0.718	6.033	5.154	4.260	nan	5.783	6.200	1.761	1.056	0.870	1.952	2.143	1.752	5.790
14591	chr8	111245781	111247642	+	0	NA	intron (NM_009149, intron 1 of 25)	PB1D7|SINE|Alu	12491	NM_009149	20340	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	7.168	0.857	0.233	4.011	4.345	2.190	3.339	5.930	3.914	4.300	4.507	2.227	4.037	4.668	4.065	6.859	4.397	4.725	1.934	1.914	2.042	3.307	1.395	1.250	6.594
8624	chr2	125498337	125499675	+	0	NA	intron (NM_007993, intron 2 of 65)	intron (NM_007993, intron 2 of 65)	7432	NM_007993	14118	Mm.271644	NM_007993	ENSMUSG00000027204	Fbn1	AI536462|B430209H23|Fib-1|Tsk	fibrillin 1	protein-coding	7.851	10.391	4.020	8.020	2.699	1.101	5.451	5.490	4.004	7.679	3.067	3.558	6.426	4.931	9.928	9.919	6.094	8.272	7.773	4.096	3.734	9.387	4.713	4.970	14.069
14201	chr8	47154663	47170661	+	0	NA	Intergenic	Intergenic	126740	NM_001286376	71069	Mm.23973	NM_175162	ENSMUSG00000038143	Stox2	4933409N07Rik|AI449080|AI835114|mKIAA1392	storkhead box 2	protein-coding	6.519	0.756	0.734	4.745	4.942	2.603	3.467	5.869	6.048	7.886	2.138	0.993	8.263	7.321	5.408	7.556	6.094	6.893	1.142	1.056	0.646	1.270	0.985	0.572	5.919
13931	chr7	151015607	151018919	+	0	NA	Intergenic	Intergenic	5702428	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	nan	nan	2.109	nan	2.047	0.707	2.666	5.452	nan	2.604	3.466	2.799	2.332	3.907	3.450	3.836	2.751	3.672	2.207	2.276	1.374	2.018	nan	2.139	4.444
12639	chr6	117993041	118002847	+	0	NA	Intergenic	CpG	-13593	NM_001316749	70727	Mm.87660	NM_027526	ENSMUSG00000030134	Rasgef1a	6330404M18Rik|AI835194	RasGEF domain family, member 1A	protein-coding	3.624	0.609	0.269	7.322	4.276	2.252	9.373	4.338	2.722	3.805	0.992	0.684	9.340	10.958	9.377	10.611	4.169	8.078	0.822	0.570	0.622	0.678	nan	0.314	12.233
15812	chrX	136097367	136098667	+	0	NA	Intergenic	Intergenic	-6586	NR_045424	70491	Mm.396636	NR_045424	ENSMUSG00000087553	5730412P04Rik	-	RIKEN cDNA 5730412P04 gene	ncRNA	3.587	0.201	0.203	0.573	0.872	0.464	2.641	5.062	1.093	1.058	0.616	1.287	3.539	3.030	2.865	2.465	2.543	1.897	0.658	0.443	0.471	0.319	0.338	0.347	1.790
13850	chr7	144618382	144620561	+	0	NA	intron (NM_001242349, intron 13 of 24)	intron (NM_001242349, intron 13 of 24)	-37035	NM_010175	14082	Mm.5126	NM_010175	ENSMUSG00000031077	Fadd	Mort1/FADD	Fas (TNFRSF6)-associated via death domain	protein-coding	nan	8.463	6.569	nan	0.455	0.303	0.359	0.506	nan	0.526	0.499	0.188	0.181	0.389	0.452	0.516	0.799	0.635	0.641	0.674	0.429	0.442	nan	0.588	nan
9037	chr2	167744346	167748575	+	0	NA	Intergenic	Intergenic	55283	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	3.933	1.859	1.003	4.645	3.818	1.663	1.965	4.923	2.901	3.648	6.139	2.118	2.584	5.426	3.551	4.086	2.180	nan	nan	1.519	1.381	2.084	0.759	0.855	4.566
15349	chr9	79914266	79916714	+	0	NA	intron (NM_001081243, intron 1 of 5)	intron (NM_001081243, intron 1 of 5)	62392	NM_001081243	70598	Mm.23049	NM_001081243	ENSMUSG00000034898	Filip1	5730485H21Rik|AI843021	filamin A interacting protein 1	protein-coding	10.674	18.881	8.586	10.431	6.656	5.900	10.502	8.775	7.135	18.913	9.903	7.737	9.832	11.126	10.118	10.904	7.392	11.773	7.864	nan	8.193	8.662	6.513	9.448	21.659
1525	chr10	80887092	80890419	+	0	NA	intron (NM_001081688, intron 8 of 17)	ZP3AR|Satellite|Satellite	8939	NM_001081688	432478	Mm.235302	NM_001081688	ENSMUSG00000059406	Tmprss9	Serase-1B	transmembrane protease, serine 9	protein-coding	4.368	3.549	0.988	6.594	4.522	2.223	4.008	4.388	3.085	5.515	3.349	2.466	3.237	3.977	4.751	5.593	4.064	5.994	4.483	3.500	3.992	6.907	4.029	4.377	8.723
10195	chr4	73435137	73437360	+	0	NA	Intergenic	Intergenic	-31176	NM_001013393	433719	Mm.348294	NM_001013393	ENSMUSG00000066137	Gm11487	OTTMUSG00000001246	predicted gene 11487	protein-coding	3.550	0.390	0.131	5.265	2.403	1.736	3.846	6.094	4.483	6.018	1.109	2.847	5.113	4.751	6.835	6.233	4.275	7.565	4.965	1.836	2.042	5.603	2.184	2.650	9.455
14410	chr8	86946903	86949989	+	0	NA	Intergenic	B1F|SINE|Alu	-63188	NM_030563	80750	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.579	0.592	0.201	0.362	0.164		0.243	0.246	nan	0.410	0.243	0.359	0.072	0.333	0.292	0.643	0.380	0.420	4.929	2.754	1.520	4.510	5.592	3.812	0.650
4047	chr13	43879803	43886156	+	0	NA	Intergenic	ORR1A2|LTR|ERVL-MaLR	97867	NM_001289915	12522	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	3.751	13.467	6.790	3.189	1.305	1.160	2.364	1.452	2.265	2.870	0.738	0.661	1.773	2.098	3.357	3.248	2.332	nan	1.179	nan	1.216	1.121	0.992	0.846	4.514
7199	chr18	39793381	39796862	+	0	NA	Intergenic	MERVL-int|LTR|ERVL	21624	NM_011033	18459	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	6.452	1.667	0.844	5.384	4.223	2.136	5.189	5.704	3.934	5.171	2.103	1.282	5.010	6.723	4.439	5.651	4.917	7.136	1.103	1.637	0.569	1.391	1.238	0.726	7.239
12378	chr6	85968263	85970899	+	0	NA	Intergenic	Intergenic	-7914	NM_028099	72102	Mm.24007	NM_028099	ENSMUSG00000030002	Dusp11	2010300F21Rik|AI481497	dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)	protein-coding	1.693	0.772	0.487	nan	0.530	0.388	4.161	1.199	0.712	1.121	2.216	1.802	2.723	5.892	3.384	3.362	2.680	nan	nan	0.437	0.418	0.537	0.428	0.305	2.576
2545	chr11	83104616	83106462	+	0	NA	Intergenic	RLTR9B|LTR|ERVK	-11306	NM_011407	20555	Mm.10948	NM_011407	ENSMUSG00000078763	Slfn1	AV316259	schlafen 1	protein-coding	6.607	9.401	6.561	6.261	4.211	2.714	4.573	5.903	5.912	4.673	4.485	5.053	3.277	5.624	5.722	7.214	6.577	6.208	6.097	6.230	6.774	6.822	6.266	8.810	5.715
14224	chr8	48546052	48548454	+	0	NA	intron (NM_011857, intron 2 of 28)	intron (NM_011857, intron 2 of 28)	127437	NM_001145937	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding	1.491	0.752	0.471	1.098	0.461	0.323	0.472	0.569	0.651	0.723	0.690	0.427	0.252	0.476	0.702	1.266	1.185	1.178	4.389	3.023	1.851	3.698	2.731	1.950	1.145
138	chr1	40326955	40329398	+	0	NA	intron (NM_133193, intron 3 of 10)	intron (NM_133193, intron 3 of 10)	3549	NM_133193	107527	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	3.799	2.361	0.830	2.157	0.961	0.251	1.568	2.015	1.966	2.057	3.317	1.339	2.047	2.195	1.962	5.037	2.181	3.335	0.575	0.418	0.231	0.562	0.456		2.506
14342	chr8	74841326	74847842	+	0	NA	Intergenic	B3|SINE|B2	-28590	NM_027837	71597	Mm.158735	NM_027837	ENSMUSG00000031621	Isx	9130012O13Rik|Pix-1	intestine specific homeobox	protein-coding	5.113	nan	1.948	10.102	3.574	2.257	nan	nan	nan	5.615	1.996	1.521	3.372	4.858	4.770	nan	4.776	4.681	1.238	1.479	1.322	nan	1.060	1.377	8.074
13875	chr7	148067166	148068721	+	0	NA	Intergenic	Intergenic	2753108	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	8.235	8.212	3.648	8.356	2.503	1.031	6.598	9.761	nan	5.839	6.135	2.995	8.301	8.474	8.656	9.034	7.960	6.443	5.405	2.842	2.009	5.339	nan	2.662	12.777
9596	chr3	100834149	100835913	+	0	NA	intron (NM_178594, intron 1 of 5)	intron (NM_178594, intron 1 of 5)	9572	NM_178594	242122	Mm.137467	NM_178594	ENSMUSG00000051076	Vtcn1	B7h4|B7s1|B7x|BC032925	V-set domain containing T cell activation inhibitor 1	protein-coding	5.167	1.523	0.894	3.050	3.056	1.122	4.048	1.707	3.309	3.273	3.775	1.117	3.690	5.227	3.873	nan	3.085	3.550	0.919	1.537	1.029	0.762	0.974	0.780	3.935
724	chr1	145617331	145619933	+	0	NA	Intergenic	L1_Mur1|LINE|L1	-843211	NM_022881	64214	Mm.253927	NM_022881	ENSMUSG00000026357	Rgs18	-	regulator of G-protein signaling 18	protein-coding	6.532	1.355	0.547	5.608	3.580	2.064	5.093	5.622	6.258	5.822	3.533	4.150	7.842	4.538	7.098	11.579	9.370	7.227	11.984	6.886	3.995	8.186	8.762	5.348	9.144
13085	chr7	30271395	30284294	+	0	NA	intron (NM_146186, intron 1 of 32)	intron (NM_146186, intron 1 of 32)	-2250	NR_144498	108167416	Mm.471845	NR_144498		LOC108167416	-	uncharacterized LOC108167416	ncRNA	5.122	0.969	0.528	4.152	4.929	3.427	4.956	6.737	4.407	4.935	3.769	2.755	5.798	7.778	5.479	5.741	4.079	6.586	2.894	2.516	2.321	3.948	3.084	2.665	6.054
3598	chr12	88157131	88160286	+	0	NA	Intergenic	L1Md_F2|LINE|L1	23186	NM_001105254	100039315	Mm.426539	NM_001105254	ENSMUSG00000066027	Gm10436	ENSMUSG00000072907	predicted gene 10436	protein-coding	4.747	2.715	0.700	5.313	2.404	1.263	4.827	3.219	4.093	5.755	1.877	1.253	4.181	6.427	7.212	10.015	5.577	6.600	3.407	2.115	1.326	5.473	2.023	1.568	11.641
15386	chr9	92168763	92172297	+	0	NA	Intergenic	Cheshire|DNA|hAT-Charlie	-22406	NM_001195693	100504689	Mm.464262	NM_001195693	ENSMUSG00000095654	Plscr5	331000	phospholipid scramblase family, member 5	protein-coding	6.188	2.244	1.450	5.155	2.735	1.029	5.144	4.693	3.389	2.817	4.262	2.770	4.736	4.633	4.407	4.289	2.903	5.490	0.781	1.848	0.625	0.744	0.940	0.828	2.917
12680	chr6	122241436	122245290	+	0	NA	intron (NR_027619, intron 29 of 35)	intron (NR_027619, intron 29 of 35)	39470	NM_016970	50928	Mm.20434	NM_016970	ENSMUSG00000030114	Klrg1	2F1-Ag|MAFA|MAFA-L	killer cell lectin-like receptor subfamily G, member 1	protein-coding	2.006	7.301	4.605	1.161	1.229	0.635	2.626	2.757	0.893	0.981	3.943	1.424	1.253	nan	1.121	1.103	1.337	1.046	1.698	2.187	0.957	0.915	nan	1.400	0.790
3534	chr12	81951520	81958780	+	0	NA	intron (NM_018814, intron 12 of 35)	intron (NM_018814, intron 12 of 35)	95120	NM_018814	54604	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog (Drosophila)	protein-coding	8.868	1.906	1.323	6.617	8.043	4.747	4.659	2.500	6.770	6.845	8.198	3.849	6.681	7.278	4.715	5.539	5.420	7.926	2.551	2.768	1.773	3.572	2.081	1.405	5.928
1195	chr10	25151885	25161852	+	0	NA	Intergenic	LTR78|LTR|ERV1	43302	NM_001347460	432442	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	2.525	7.358	5.058	2.080	1.748	1.246	2.985	2.974	2.630	1.998	1.209	2.721	1.723	3.220	2.386	2.821	1.577	2.188	1.245	1.127	0.833	0.939	1.293	1.206	1.376
5646	chr15	99531517	99533418	+	0	NA	Intergenic	B1_Mur4|SINE|Alu	-4302	NM_001038658	72393	Mm.39760	NM_028224	ENSMUSG00000023011	Faim2	2900002L20Rik|Lfg|Lfg2|NMP25|Nmp35|Tmbim2	Fas apoptotic inhibitory molecule 2	protein-coding	5.101	10.452	3.787	7.176	3.466	3.074	6.211	7.612	3.022	8.057	3.614	2.166	6.773	6.425	6.152	nan	4.443	6.153	4.014	1.948	4.139	5.042	4.402	6.493	9.730
5082	chr15	27610158	27611210	+	0	NA	intron (NM_001013792, intron 5 of 6)	intron (NM_001013792, intron 5 of 6)	20009	NM_001013792	432940	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	6.725	10.197	2.865	5.393	2.518	1.254	2.765	1.871	2.795	6.610	2.037	1.283	1.364	3.350	2.854	4.208	2.031	3.458	2.778	1.603	2.370	3.058	2.138	2.478	6.416
13616	chr7	119428185	119435535	+	0	NA	Intergenic	RMER1A|Other|Other	27412	NM_025989	67133	Mm.46403	NM_025989	ENSMUSG00000030954	Gp2	2310037I18Rik|AV060639	glycoprotein 2 (zymogen granule membrane)	protein-coding	5.340	0.677	0.355	5.549	4.789	2.789	7.732	6.986	5.221	5.919	1.754	1.328	8.813	9.854	9.509	9.104	5.209	8.354	2.764	1.352	0.845	2.557	2.385	1.860	8.842
10174	chr4	63019468	63021025	+	0	NA	intron (NM_028326, intron 1 of 14)	intron (NM_028326, intron 1 of 14)	54672	NM_028326	72701	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	1.178	1.426	0.497	1.304	3.104	2.273	0.920	2.435	2.005	1.738	1.012	1.670	1.583	3.760	2.106	2.153	1.333	1.836	2.139	0.755	0.819	nan	nan	0.393	2.281
1327	chr10	59394576	59396714	+	0	NA	Intergenic	CpG	-8040	NM_023530	69836	Mm.30268	NM_023530	ENSMUSG00000009646	Pla2g12b	2010002E04Rik|Fksg71|Pla2g13|hlb218	phospholipase A2, group XIIB	protein-coding	2.502	4.899	2.628	3.774	5.207	3.753	0.980	2.096	2.547	2.259	4.535	2.097	0.991	1.715	1.504	1.763	1.441	1.952	nan	1.670	1.852	1.141	1.147	1.278	1.723
7785	chr19	42268460	42275118	+	0	NA	Intergenic	Intergenic	8381	NR_037246	100526549		NR_037246	ENSMUSG00000093234	Mir3085	mir-3085|mmu-mir-3085	microRNA 3085	ncRNA	nan	0.579	0.340	0.865	0.459	0.334	2.102	nan	0.894	0.940	0.241	0.486	1.264	1.350	1.737	1.757	nan	1.628	2.353	1.869	1.543	6.080	3.561	2.492	2.206
9865	chr3	146232151	146234617	+	0	NA	intron (NM_022983, intron 1 of 2)	intron (NM_022983, intron 1 of 2)	12423	NM_022983	65086	Mm.155520	NM_022983	ENSMUSG00000036832	Lpar3	Edg7|lpA3	lysophosphatidic acid receptor 3	protein-coding	0.496	0.686	0.501	0.440	0.304	0.161	0.516	1.094	0.550	0.609	0.883	1.301	0.473	0.396	0.426	0.671	0.814	0.802	2.984	3.727	2.268	5.847	5.278	2.263	0.402
2667	chr11	94850556	94856100	+	0	NA	Intergenic	Intergenic	-3735	NM_001205037	432591	Mm.370372	NM_001205037		Gm11544	OTTMUSG00000002042	predicted gene 11544	protein-coding	9.366	13.394	3.646	13.118	3.424	2.352	6.712	6.095	6.331	12.157	5.975	4.621	5.656	7.438	8.464	8.823	5.180	9.101	6.388	nan	3.478	6.677	nan	nan	13.562
11900	chr5	141123798	141125357	+	0	NA	Intergenic	Intergenic	-116957	NM_177879	330222	Mm.151931	NM_177879	ENSMUSG00000039683	Sdk1	5330440E10|6720466O15Rik	sidekick cell adhesion molecule 1	protein-coding	5.555	8.211	1.591	8.854	2.404	1.106	4.825	3.625	3.055	7.027	3.637	1.631	3.469	5.288	6.956	8.310	2.238	7.421	6.550	1.792	3.404	7.890	3.422	4.057	11.469
7144	chr18	36011569	36013542	+	0	NA	intron (NR_110349, intron 14 of 14)	intron (NR_110349, intron 14 of 14)	47725	NR_110349	74002	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0.636	1.778	1.399	0.755	0.545	1.105	0.366	1.058	0.440	0.776	0.558	0.496	0.465	nan	0.481	nan	0.878	0.461	2.986	1.285	3.284	2.180	3.440	3.238	0.898
6945	chr17	87540884	87543511	+	0	NA	Intergenic	Intergenic	-93782	NM_008532	17075	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	5.437	1.136	0.648	3.293	2.926	1.109	7.596	5.616	4.216	3.809	5.156	2.313	7.856	7.007	7.308	8.071	6.459	6.015	0.922	0.672	0.584	1.635	0.542	0.327	6.333
11183	chr5	36818873	36824183	+	0	NA	intron (NM_008550, intron 6 of 18)	intron (NM_008550, intron 6 of 18)	9121	NM_008550	17160	Mm.761	NM_008550	ENSMUSG00000029119	Man2b2	mKIAA0935	mannosidase 2, alpha B2	protein-coding	2.652	2.690	0.888	3.529	1.647	0.593	1.628	1.962	2.727	3.423	1.741	0.661	3.440	5.344	nan	3.955	2.290	nan	1.283	0.674	0.302	1.028	0.787	0.431	3.964
9738	chr3	121209402	121213046	+	0	NA	intron (NM_178936, intron 7 of 7)	intron (NM_178936, intron 7 of 7)	-39529	NM_025637	66568	Mm.263163	NM_025637	ENSMUSG00000028133	Rwdd3	2510027J23Rik|3110037C01Rik|AI035684|AI662458|Rsume|X2CR1	RWD domain containing 3	protein-coding	2.790	0.885	0.457	1.998	0.833	0.282	2.347	1.396	2.042	3.348	0.508	0.278	4.016	5.128	3.778	6.027	4.004	3.046	0.857	0.658	0.390	0.859	nan	0.454	6.792
4080	chr13	46978053	46981172	+	0	NA	Intergenic	MIRc|SINE|MIR	35238	NM_175340	105193	Mm.25593	NM_175340	ENSMUSG00000044231	Nhlrc1	AI505271|B230309E09Rik|EPM2B	NHL repeat containing 1	protein-coding	4.061	1.154	0.255	5.550	2.922	1.626	2.194	4.130	3.771	3.074	2.739	0.898	2.960	4.305	3.639	4.951	2.093	5.697	0.840	nan	0.457	1.525	0.507	0.257	6.053
4040	chr13	43535695	43540897	+	0	NA	TTS (NM_001081059)	TTS (NM_001081059)	21895	NM_001081059	76137	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	nan	6.465	4.286	nan	1.752	1.062	0.988	1.151	1.794	1.400	1.081	0.932	1.207	1.126	1.348	1.476	1.215	2.121	1.169	nan	0.766	0.511	0.765	0.518	nan
7149	chr18	36096690	36098246	+	0	NA	intron (NM_001167891, intron 1 of 9)	L1ME1|LINE|L1	-8735	NR_015571	74966	Mm.379238	NM_030089		4930471G03Rik	1700007N01Rik	RIKEN cDNA 4930471G03 gene	ncRNA	1.796	17.705	6.195	2.625	0.981	0.331	0.537	1.195	1.079	1.772	1.144	1.351	0.678	nan	1.804	nan	0.743	1.241	6.297	5.181	4.616	9.832	6.055	6.768	1.356
14492	chr8	97124347	97127039	+	0	NA	Intergenic	RLTR17|LTR|ERVK	-579720	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	7.974	9.787	2.714	10.996	3.382	1.628	6.187	8.440	4.362	7.121	4.490	3.446	7.374	8.589	10.616	11.177	6.145	9.069	3.933	1.757	2.298	7.466	1.956	2.265	16.586
11441	chr5	93031584	93034834	+	0	NA	Intergenic	Intergenic	11813	NM_175270	78088	Mm.245085	NM_175270	ENSMUSG00000045314	Sowahb	5730467H21Rik|Ankrd56	sosondowah ankyrin repeat domain family member B	protein-coding	4.800	3.391	1.178	4.135	2.058	1.415	5.414	3.425	3.070	5.904	0.838	0.590	5.443	6.529	7.490	8.252	5.379	5.433	1.637	1.077	1.102	2.295	1.269	1.603	9.614
3985	chr13	37748465	37752066	+	0	NA	Intergenic	HAL1ME|LINE|L1	-75773	NM_026830	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	7.135	nan	3.431	4.380	4.576	4.012	nan	4.431	nan	nan	4.818	3.093	4.303	5.887	2.903	nan	3.938	nan	1.371	2.444	2.551	1.534	1.226	1.224	nan
8508	chr2	103732901	103737322	+	0	NA	intron (NM_153126, intron 12 of 28)	intron (NM_153126, intron 12 of 28)	26139	NM_153126	98956	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	0.604	8.215	4.130	0.807	0.429	0.168	0.419	0.473	0.819	0.747	0.340	0.295	0.160	0.276	0.543	0.890	0.592	0.774	1.120	0.836	0.679	nan	1.141	0.824	0.722
9309	chr3	52697943	52700673	+	0	NA	Intergenic	RCHARR1|DNA|hAT-Charlie	-40416	NR_038079	329639	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	4.125	1.023	0.472	3.018	2.850	1.232	6.314	2.962	3.576	3.859	1.174	0.771	5.517	4.540	4.592	4.480	3.468	5.349	1.211	1.310	0.548	1.142	1.049	0.639	4.421
2780	chr11	100469744	100471949	+	0	NA	intron (NM_172565, intron 1 of 1)	URR1A|DNA|hAT-Charlie	1936	NM_172565	217194	Mm.183320	NM_172565	ENSMUSG00000048732	Klhl11	BC011167	kelch-like 11	protein-coding	4.382	5.264	3.379	5.329	4.504	2.534	2.689	3.118	3.026	3.610	3.595	4.317	2.013	2.896	2.937	3.813	2.291	4.511	1.350	nan	1.307	1.099	nan	nan	2.805
446	chr1	92936508	92942890	+	0	NA	intron (NM_011796, intron 3 of 11)	intron (NM_011796, intron 3 of 11)	5291	NM_011796	23830	Mm.294315	NM_011796	ENSMUSG00000026270	Capn10	AW049679|Capn8|mKIAA1845	calpain 10	protein-coding	10.323	1.567	0.697	6.889	5.623	2.674	8.299	7.458	6.564	7.764	4.708	3.225	10.108	11.072	9.108	14.672	7.781	9.074	1.477	1.307	0.831	nan	0.747	0.337	10.427
12864	chr6	146879675	146883856	+	0	NA	Intergenic	Intergenic	-6729	NM_001170433	67533	Mm.103382	NM_026221	ENSMUSG00000016487	Ppfibp1	4632409B19Rik|AW214454|AW261454	PTPRF interacting protein, binding protein 1 (liprin beta 1)	protein-coding	nan	0.896	0.429	nan	2.027	1.502	2.533	5.051	2.644	nan	3.193	2.311	nan	3.501	3.034	3.059	2.392	2.557	1.270	nan	0.740	nan	0.663	0.744	nan
5942	chr16	25056933	25062450	+	0	NA	promoter-TSS (NR_040374)	promoter-TSS (NR_040374)	52	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	8.716	2.712	0.853	7.749	5.900	2.699	4.779	9.494	4.964	7.345	5.456	4.156	6.338	9.411	5.953	6.213	4.209	8.039	3.535	2.367	2.144	6.753	nan	1.996	7.990
2181	chr11	52181923	52188396	+	0	NA	Intergenic	Intergenic	-27252	NR_034155	257871	Mm.253576	NR_034155		Olfr1372-ps1	GA_x5J8B7TR6JS-3-632|MOR256-54P|NP_TR6JSE50FPA	olfactory receptor 1372, pseudogene 1	pseudo	1.605	1.029	0.941	1.729	1.920	1.383	1.701	2.414	1.565	1.314	1.369	1.106	1.183	2.029	1.348	nan	1.480	nan	3.307	3.691	4.261	nan	nan	5.650	1.271
9068	chr2	172847450	172855191	+	0	NA	Intergenic	Intergenic	89001	NM_007557	12162	Mm.595	NM_007557	ENSMUSG00000008999	Bmp7	OP1	bone morphogenetic protein 7	protein-coding	1.912	13.536	3.475	2.927	0.710	0.484	2.622	2.509	1.343	1.699	0.915	0.880	3.575	nan	2.322	2.872	2.363	nan	nan	1.597	1.687	3.946	1.982	1.602	4.380
2229	chr11	55177359	55183394	+	0	NA	intron (NM_153170, intron 3 of 9)	intron (NM_153170, intron 3 of 9)	4701	NM_153170	246049	Mm.291280	NM_153170	ENSMUSG00000020264	Slc36a2	A530067G19Rik|PAT2|Tramd1	solute carrier family 36 (proton/amino acid symporter), member 2	protein-coding	3.324	0.593	0.307	4.357	3.039	1.871	2.045	1.700	2.791	4.518	2.629	0.817	3.574	7.955	4.306	6.085	5.023	3.939	nan	0.768	0.639	0.758	0.794	0.485	7.563
15827	chrX	138818609	138826072	+	0	NA	intron (NM_030688, intron 8 of 10)	MLT-int|LTR|ERVL-MaLR	-92090	NM_013724	27206	Mm.482319	NM_013724	ENSMUSG00000052854	Nrk	AA407323|AA409510|AI225895|AV168563|AW538185|Nesk	Nik related kinase	protein-coding	4.102	2.302	1.037	3.543	4.726	3.468	4.236	4.110	3.774	4.972	2.214	1.516	4.497	5.193	4.228	4.295	3.236	4.800	1.734	1.359	1.501	1.952	1.396	1.401	3.806
14449	chr8	90920789	90923012	+	0	NA	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	-10349	NM_001310530	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	2.876	0.605	0.432	1.630	2.937	1.779	0.823	1.390	nan	3.536	0.357	0.366	3.530	5.071	1.646	3.017	3.855	2.500	nan	1.359	0.893	0.584	0.624	0.302	3.438
9650	chr3	104838550	104840244	+	0	NA	intron (NM_009797, intron 5 of 9)	intron (NM_009797, intron 5 of 9)	-20834	NM_001163440	17454	Mm.1597	NM_008619	ENSMUSG00000002227	Mov10	C77703|Mov-10	Moloney leukemia virus 10	protein-coding	7.049	1.507	0.544	5.473	2.065	1.093	2.579	3.013	3.371	3.491	2.338	1.139	1.644	3.552	2.772	4.224	2.532	5.323	1.104	1.217	0.941	0.981	1.096	0.701	4.751
1599	chr10	92622602	92627323	+	0	NA	Intergenic	Intergenic	97456	NM_008682	17997	Mm.2998	NM_008682	ENSMUSG00000019988	Nedd1	-	neural precursor cell expressed, developmentally down-regulated gene 1	protein-coding	nan	9.006	4.251	8.429	5.232	3.689	5.346	5.239	4.780	9.470	6.327	3.952	4.655	7.149	6.068	6.292	5.236	7.007	2.952	2.721	2.840	nan	nan	3.219	9.682
6283	chr16	98048054	98049319	+	0	NA	Intergenic	L1Md_F2|LINE|L1	33753	NR_015491	320586	Mm.442230	NR_015491		A630089N07Rik	-	RIKEN cDNA A630089N07 gene	ncRNA	3.620	0.726	0.689	1.185	1.661	0.342	4.552	6.535	2.230	1.788	0.731	0.477	4.224	3.643	3.498	4.783	2.289	2.814	nan	0.717	0.506	1.145	1.246	0.312	4.724
11431	chr5	91829972	91832567	+	0	NA	Intergenic	Intergenic	-63969	NR_045383	73452	Mm.396233	NR_045383	ENSMUSG00000101978	1700063O14Rik	-	RIKEN cDNA 1700063O14 gene	ncRNA	4.729	2.539	1.229	3.334	1.492	0.966	5.701	4.878	2.958	4.891	3.630	2.645	6.077	7.180	6.288	6.491	4.230	4.261	3.050	1.689	1.278	5.686	2.300	1.997	6.740
3013	chr11	116703535	116706376	+	0	NA	Intergenic	RMER21B|LTR|ERV1	-10295	NM_009180	20446	Mm.3947	NM_009180	ENSMUSG00000057286	St6galnac2	II|ST6GalNAc|Siat7|Siat7b	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	protein-coding	7.882	12.668	3.241	10.743	4.449	3.154	6.058	7.683	5.706	11.109	6.197	3.817	6.719	7.861	9.797	10.867	4.717	8.545	4.918	nan	3.526	7.068	2.661	3.663	11.938
2306	chr11	62026145	62032589	+	0	NA	exon (NM_001281818, exon 2 of 15)	exon (NM_001281818, exon 2 of 15)	-47657	NM_001029936	432572	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	3.429	0.546	0.632	3.459	5.073	3.467	1.962	1.729	4.117	4.289	2.308	1.201	4.015	6.375	3.122	4.917	3.811	3.789	nan	0.962	0.922	0.551	2.022	1.779	nan
1149	chr10	19939906	19941238	+	0	NA	intron (NM_008580, intron 1 of 29)	intron (NM_008580, intron 1 of 29)	6046	NM_008580	26408	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	3.322	1.126	0.390	2.950	1.537	0.660	1.794	4.235	3.990	2.888	1.546	1.520	4.098	4.265	4.006	5.040	3.986	3.319	1.704	1.761	0.710	2.643	1.009	0.742	4.187
9167	chr3	21565179	21572948	+	0	NA	Intergenic	Intergenic	-507589	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.912	nan	0.498	1.016	0.887	0.319	2.015	1.468	2.187	1.662	7.778	3.541	1.062	1.002	1.166	0.969	1.009	2.014	0.863	0.518	0.241	0.558	0.587	0.366	0.898
8210	chr2	37619142	37625478	+	0	NA	intron (NM_009261, intron 9 of 16)	intron (NM_009261, intron 9 of 16)	24975	NM_009261	20744	Mm.237095	NM_009261	ENSMUSG00000026915	Strbp	6430510M02Rik|AI852513|C230082I21Rik|C86322|Spnr	spermatid perinuclear RNA binding protein	protein-coding	1.154	12.748	3.778	1.264	0.361	0.177	1.067	nan	0.705	nan	0.342	0.414	0.816	0.834	1.191	1.983	1.188	1.434	1.173	0.924	0.778	2.735	0.507	0.269	1.928
10727	chr4	136061045	136062703	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	-8503	NM_025919	67025	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	4.476	0.354	0.379	3.443	4.636	4.141	2.965	5.445	3.552	2.739	3.421	2.209	3.680	4.144	2.923	3.124	2.472	nan	1.011	1.180	0.847	1.134	nan	1.251	1.776
2407	chr11	70480725	70484115	+	0	NA	Intergenic	Intergenic	-22436	NM_023158	66102	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	11.279	11.236	4.247	9.206	4.989	2.097	10.252	9.525	6.151	8.767	6.231	4.016	10.103	14.836	11.696	12.285	9.884	9.712	5.079	4.943	3.081	5.382	nan	3.077	13.337
12768	chr6	134211570	134214182	+	0	NA	intron (NM_001303102, intron 3 of 8)	intron (NM_001303102, intron 3 of 8)	177176	NM_007961	14011	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	5.520	5.271	1.624	3.916	2.374	0.479	6.377	8.848	4.599	3.500	6.475	3.736	5.388	5.456	7.099	7.072	4.428	5.328	3.986	2.249	1.083	4.534	1.949	1.140	5.710
11516	chr5	104809008	104811066	+	0	NA	Intergenic	RLTR10|LTR|ERVK	50031	NM_001039231	626391	Mm.385405	NM_001039231	ENSMUSG00000072774	Zfp951	C230055K05Rik	zinc finger protein 951	protein-coding	2.119	0.788	0.532	1.291	1.067	0.424	6.262	4.055	3.200	2.003	4.679	4.029	3.243	3.623	3.323	1.323	1.372	2.151	nan	0.322	0.238	0.565	0.340	0.246	1.003
15443	chr9	102915148	102917622	+	0	NA	Intergenic	RMER19B|LTR|ERVK	81465	NM_001042607	20187	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	2.359	1.047	0.385	4.065	1.562	0.977	1.797	0.822	2.506	2.327	0.794	0.559	1.521	3.221	2.826	3.379	1.107	3.490	0.517	0.496	0.626	0.603	0.433	0.416	3.262
2866	chr11	105169774	105177822	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-5009	NM_001294331	24086	Mm.126976	NM_011903	ENSMUSG00000020694	Tlk2	4933403M19Rik|PKU-alpha|PKUalpha|Tlk	tousled-like kinase 2 (Arabidopsis)	protein-coding	4.063	0.986	0.401	nan	4.391	2.651	4.792	1.465	nan	4.796	1.040	0.679	2.305	4.482	4.323	6.491	3.133	nan	1.449	1.605	1.100	nan	0.831	0.675	5.653
12162	chr6	37389317	37393532	+	0	NA	intron (NM_178661, intron 1 of 11)	intron (NM_178661, intron 1 of 11)	50724	NM_178661	208647	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	7.523	5.472	2.001	7.673	3.373	2.090	8.377	6.886	6.074	7.012	5.882	3.487	8.951	9.847	8.945	11.089	8.617	nan	nan	4.161	2.807	nan	nan	3.737	9.585
2443	chr11	74274973	74281110	+	0	NA	Intergenic	L1_Mus1|LINE|L1	-5768	NM_011002	18359	Mm.300072	NM_011002	ENSMUSG00000070374	Olfr59	IH3|MOR133-3P	olfactory receptor 59	protein-coding	nan	8.439	4.222	0.481	0.257	0.160	nan	2.443	0.633	0.373	0.653	0.516	0.475	nan	nan	nan	0.383	nan	1.063	1.191	nan	1.307	5.170	3.404	0.990
11768	chr5	134577057	134579419	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-4452	NM_020022	19718	Mm.332739	NM_020022	ENSMUSG00000023104	Rfc2	2610008M13Rik|40kDa|AI326953|Recc2	replication factor C (activator 1) 2	protein-coding	4.275	1.622	0.592	1.799	3.372	1.609	4.505	4.105	2.734	3.003	2.923	2.666	3.134	4.554	5.420	3.042	2.248	3.809	1.491	1.057	0.989	1.496	nan	1.257	2.935
5559	chr15	88999156	89012659	+	0	NA	intron (NM_031260, intron 12 of 26)	intron (NM_031260, intron 12 of 26)	22913	NM_031260	83456	Mm.358791	NM_031260	ENSMUSG00000015365	Mov10l1	CHAMP|Csm	Moloney leukemia virus 10-like 1	protein-coding	10.782	9.557	2.378	nan	3.922	2.102	11.758	15.987	5.913	8.119	6.163	3.639	12.182	11.500	nan	11.158	8.504	10.565	nan	1.993	1.670	nan	2.613	2.184	14.750
13419	chr7	95452999	95460842	+	0	NA	Intergenic	L1MA4|LINE|L1	-714324	NM_001310762	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	3.111	0.664	0.560	1.676	2.032	0.976	2.165	4.999	2.457	2.288	0.954	0.750	4.579	3.037	3.310	2.916	2.744	3.870	nan	0.555	0.203	0.465	0.288	0.230	1.775
7339	chr18	65751844	65754235	+	0	NA	Intergenic	Intergenic	-47539	NM_025468	66286	Mm.27800	NM_025468	ENSMUSG00000024516	Sec11c	1810029G24Rik|Sec11l3	SEC11 homolog C, signal peptidase complex subunit	protein-coding	7.253	1.402	0.358	5.107	2.511	1.230	4.588	4.649	3.145	3.135	2.694	0.974	3.944	6.578	4.625	4.890	3.517	5.019	1.551	1.735	0.728	2.109	1.284	0.453	6.586
8146	chr2	32720519	32756460	+	0	NA	intron (NM_027529, intron 1 of 2)	PB1D11|SINE|Alu	2527	NM_027529	70730	Mm.401360	NM_027529	ENSMUSG00000009551	6330409D20Rik	AA517851	RIKEN cDNA 6330409D20 gene	protein-coding	8.436	1.979	0.828	7.492	7.033	4.945	8.648	10.171	nan	6.927	6.538	3.738	9.169	10.806	7.814	10.319	7.651	8.171	5.074	3.314	3.284	4.704	4.801	4.429	11.851
12030	chr6	5181376	5189236	+	0	NA	exon (NM_011134, exon 3 of 9)	exon (NM_011134, exon 3 of 9)	8640	NM_011134	18979	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	4.423	0.655	0.521	3.150	3.005	2.316	3.785	4.444	3.706	4.375	1.840	0.697	5.985	6.786	4.890	6.895	5.695	5.246	0.516	0.566	0.632	0.447	0.649	0.435	nan
255	chr1	64782961	64786285	+	0	NA	Intergenic	Intergenic	-46873	NM_022721	14367	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	9.042	5.332	1.909	7.642	2.566	1.548	7.250	7.934	5.453	8.524	3.807	2.862	9.882	10.684	8.555	14.368	7.421	9.388	2.430	0.471	0.781	2.389	1.456	1.591	14.053
4688	chr14	55890574	55896670	+	0	NA	intron (NR_138134, intron 5 of 7)	(TCTA)n|Simple_repeat|Simple_repeat	6610	NM_001082975	654795	Mm.486218	NM_001082975	ENSMUSG00000022223	Sdr39u1	2310014G06Rik	short chain dehydrogenase/reductase family 39U, member 1	protein-coding	0.375	nan	1.543	0.435	0.067	0.081	0.342	nan	0.200	0.243	0.227	0.198	0.129	0.239	0.231	0.511	0.207	0.551	2.809	1.904	1.837	5.759	1.995	2.389	0.556
11028	chr5	17334426	17337475	+	0	NA	Intergenic	Intergenic	-140172	NM_027609	70935	Mm.332225	NM_027609	ENSMUSG00000058643	Speer4f1	4922502J04Rik|SPEER-4F|Speer4f	spermatogenesis associated glutamate (E)-rich protein 4F1	protein-coding	4.376	0.592	0.470	3.905	2.890	1.556	3.636	3.416	3.850	3.809	1.298	0.562	6.494	5.491	4.551	5.342	3.056	5.523	0.756	0.843	0.201	0.696	0.370	0.173	2.349
2230	chr11	55210331	55212022	+	0	NA	intron (NM_153139, intron 1 of 10)	MLT1A1|LTR|ERVL-MaLR	6836	NM_153139	215335	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	2.342	1.834	0.234	3.971	2.161	1.457	2.398	2.034	2.279	3.113	1.456	0.833	1.783	3.173	2.531	3.812	1.551	3.883	nan	0.346	0.638	1.266	0.336	0.389	3.554
5364	chr15	76552914	76555773	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	15400	NM_029643	52710	Mm.28597	NM_029643	ENSMUSG00000022560	Slc52a2	2010003P03Rik|D15Ertd747e|GPCR42|Gpr172b|PAR2|mRFT1	solute carrier protein 52, member 2	protein-coding	8.918	6.407	2.010	7.904	1.609	0.649	11.408	14.130	4.132	nan	nan	3.619	12.711	10.664	10.911	10.263	10.350	7.975	5.885	3.344	3.308	nan	3.683	2.752	14.746
11339	chr5	73191476	73198037	+	0	NA	intron (NM_028194, intron 3 of 62)	intron (NM_028194, intron 3 of 62)	61862	NM_028194	72313	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	1.091	9.797	4.784	0.839	1.214	0.549	0.612	0.534	0.991	0.996	0.596	0.598	0.394	0.895	0.891	nan	0.530	nan	0.877	0.693	0.482	0.862	0.543	0.292	0.859
6026	chr16	33836303	33838772	+	0	NA	intron (NM_010580, intron 1 of 14)	intron (NM_010580, intron 1 of 14)	7872	NM_001145884	16419	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	4.422	0.877	0.528	2.354	1.185	0.552	4.800	6.458	1.972	2.371	2.590	1.531	3.710	4.614	4.646	5.397	3.746	2.484	1.593	0.529	0.305	0.789	0.907	1.056	nan
3422	chr12	73860963	73863416	+	0	NA	Intergenic	Intergenic	-39135	NM_001313920	15251	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	8.983	9.743	2.572	9.671	5.223	4.587	7.230	5.783	4.348	13.306	5.026	2.815	7.293	8.866	8.804	10.754	6.498	7.929	5.148	1.260	2.314	5.782	2.050	4.145	17.291
4740	chr14	62218039	62221136	+	0	NA	Intergenic	RLTR11B|LTR|ERVK	73392	NM_173419	239133	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	5.515	nan	1.158	4.647	3.450	3.739	4.036	6.864	5.537	6.458	8.295	5.990	4.800	4.259	5.412	7.413	4.341	6.405	2.303	1.305	1.225	2.049	1.732	1.781	4.701
11117	chr5	31863852	31869442	+	0	NA	intron (NM_144541, intron 6 of 11)	intron (NM_144541, intron 6 of 11)	168597	NM_144541	107976	Mm.482126	NM_144541	ENSMUSG00000052139	Bre	6030405P19Rik|AI429776|B830038C02Rik	brain and reproductive organ-expressed protein	protein-coding	4.599	1.281	0.506	5.239	2.241	1.005	3.741	2.515	3.706	4.259	3.672	1.357	3.165	5.388	5.546	6.014	2.790	7.461	1.101	0.964	0.523	0.867	0.662	0.346	5.507
4146	chr13	54397145	54400650	+	0	NA	Intergenic	RSINE1|SINE|B4	27548	NM_009946	12890	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120	complexin 2	protein-coding	3.468	3.055	0.535	7.115	1.810	1.364	1.651	4.493	2.740	7.868	1.126	0.995	3.492	nan	4.299	nan	2.053	5.149	8.674	3.880	3.668	10.344	6.038	7.120	nan
7380	chr18	74601059	74606878	+	0	NA	intron (NM_201600, intron 4 of 38)	intron (NM_201600, intron 4 of 38)	-72844	NR_045368	73606	Mm.444734	NR_045368		1700120E14Rik	-	RIKEN cDNA 1700120E14 gene	ncRNA	4.976	nan	0.360	4.943	4.516	3.029	4.514	7.885	5.102	8.055	4.482	2.462	7.665	7.429	6.203	6.991	4.707	7.168	3.391	nan	1.313	4.644	2.459	2.738	9.239
15651	chr9	124040180	124042681	+	0	NA	Intergenic	Intergenic	19459	NM_009914	12771	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	5.723	3.829	2.646	3.567	4.240	1.396	1.794	4.113	4.417	4.682	7.092	2.642	2.756	5.008	4.285	4.465	4.157	4.492	0.720	1.036	0.545	0.501	0.458	0.289	3.426
14195	chr8	46084730	46086344	+	0	NA	intron (NM_207213, intron 4 of 17)	intron (NM_207213, intron 4 of 17)	38609	NM_207213	102141	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	1.219	0.919	1.593	0.853	2.752	2.429	1.245	1.494	1.368	0.859	1.392	1.474	0.947	0.959	0.652	1.064	1.548	1.414	3.617	5.211	6.296	3.536	4.851	4.783	0.642
8253	chr2	58335921	58342892	+	0	NA	intron (NM_001111030, intron 1 of 8)	L1Md_F|LINE|L1	-14599	NM_001033369	269275	Mm.77751	NM_001033369	ENSMUSG00000026834	Acvr1c	ACTR-IC|ACVRLK7|ALK7|Alk-7|C230097P10	activin A receptor, type IC	protein-coding	4.894	0.793	0.422	3.871	2.806	1.221	6.991	9.116	4.092	5.676	5.951	2.866	10.136	8.104	6.777	10.117	8.087	6.329	4.408	2.661	1.288	4.956	2.465	1.536	9.033
11171	chr5	36015348	36017452	+	0	NA	TTS (NM_030889)	TTS (NM_030889)	123081	NM_027373	70292	Mm.125167	NM_027373	ENSMUSG00000029094	Afap1	2600003E23Rik|9630044L16Rik|AI848729|Afap|mKIAA3018	actin filament associated protein 1	protein-coding	5.883	2.748	0.348	6.044	1.913	0.661	5.921	8.649	5.809	6.411	3.934	5.148	6.783	8.699	9.027	9.134	nan	7.042	0.866	0.538	0.301	1.795	0.456	0.409	8.790
9591	chr3	99093616	99096095	+	0	NA	Intergenic	RLTR28|LTR|ERVL	45033	NR_110516	102634753		NR_110516	ENSMUSG00000086833	Gm12440	OTTMUSG00000006864	predicted gene 12440	ncRNA	0.484	0.599	0.193	0.276	0.230	0.040	0.353	0.257	0.211	0.256	nan	0.121	0.160	0.150	0.283	nan	0.275	0.479	3.141	2.460	1.434	4.743	1.150	0.728	0.474
5176	chr15	54870151	54877084	+	0	NA	intron (NM_001136077, intron 13 of 25)	Lx8|LINE|L1	46529	NM_015744	18606	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	8.534	0.655	0.293	nan	2.297	1.177	11.892	9.416	nan	4.342	0.694	0.525	11.583	6.875	8.161	nan	10.535	6.242	0.841	0.927	0.548	0.631	0.756	0.517	6.723
7945	chr2	5871381	5873536	+	0	NA	intron (NM_021305, intron 11 of 11)	PB1D7|SINE|Alu	22895	NM_021305	57743	Mm.21435	NM_021305	ENSMUSG00000025816	Sec61a2	-	Sec61, alpha subunit 2 (S. cerevisiae)	protein-coding	15.006	11.072	4.127	9.628	7.763	5.238	12.338	11.926	6.851	9.986	10.659	5.353	9.974	12.403	9.481	11.410	12.543	8.937	6.315	6.904	3.361	5.385	7.507	5.348	14.038
15008	chr9	44118934	44120424	+	0	NA	Intergenic	Intergenic	-6628	NM_153762	213211	Mm.392032	NM_153762	ENSMUSG00000053128	Rnf26	8030450I18Rik	ring finger protein 26	protein-coding	3.980	3.924	1.734	7.413	1.749	0.628	1.446	3.855	2.828	2.886	6.438	1.038	1.429	2.079	1.392	3.583	1.770	3.740	0.749	0.715	0.888	nan	0.471	0.732	3.271
15566	chr9	118542049	118543392	+	0	NA	intron (NM_018748, intron 11 of 23)	intron (NM_018748, intron 11 of 23)	36402	NM_018748	54214	Mm.10409	NM_018748	ENSMUSG00000038708	Golga4	AI225887|AU019508|Olp-1	golgi autoantigen, golgin subfamily a, 4	protein-coding	2.488	1.106	0.553	1.265	2.388	1.012	1.795	2.320	2.334	3.125	1.549	0.453	1.319	3.576	1.917	2.087	1.730	2.365	2.734	2.428	1.726	2.052	nan	5.717	2.507
9674	chr3	106840764	106842814	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-19232	NM_146489	258482	Mm.377527	NM_146489	ENSMUSG00000043529	Olfr266	MOR122-2	olfactory receptor 266	protein-coding	2.822	9.543	5.389	2.310	0.854	0.428	0.746	0.793	1.245	1.231	0.711	0.364	0.856	1.190	nan	1.438	1.521	1.879	0.607	1.733	0.777	0.578	1.038	0.765	1.393
13903	chr7	149269395	149271373	+	0	NA	Intergenic	Intergenic	3955549	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	3.130	nan	0.030	7.277	2.157	0.869	2.570	2.502	nan	1.981	1.758	0.924	2.489	6.761	4.439	4.763	1.321	5.321	1.299	1.118	0.625	3.789	nan	0.405	7.818
7210	chr18	42688677	42690740	+	0	NA	intron (NR_073583, intron 5 of 8)	intron (NR_073583, intron 5 of 8)	-110056	NM_181543	240239	Mm.186779	NM_181543	ENSMUSG00000042816	Gpr151	C130082O03Rik|GalRL|PGR7|nGPCR-2037	G protein-coupled receptor 151	protein-coding	2.013	0.668	0.314	0.715	0.834	0.287	1.039	2.421	1.357	1.279	4.719	3.970	1.303	nan	1.060	nan	1.699	1.734	0.925	0.331	0.391	0.495	0.647	0.398	1.086
11175	chr5	36441742	36445063	+	0	NA	Intergenic	Intergenic	21452	NR_126490	76710	Mm.165495	NR_126488	ENSMUSG00000039563	2210406O10Rik	-	RIKEN cDNA 2210406O10 gene	ncRNA	4.383	2.276	0.470	2.900	2.757	1.347	4.890	2.806	2.409	3.913	0.572	0.643	3.842	5.431	3.031	5.428	nan	nan	1.185	0.736	0.363	1.349	0.494	0.394	5.856
7431	chr18	82703645	82705149	+	0	NA	Intergenic	Intergenic	-11663	NM_177832	329002	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	3.953	11.294	2.894	3.912	1.658	0.554	2.156	3.593	2.822	3.170	3.763	2.831	5.261	4.554	3.864	2.948	1.593	4.077	2.026	nan	0.642	3.131	1.347	0.737	3.411
692	chr1	137788913	137793115	+	0	NA	Intergenic	B4A|SINE|B4	-175441	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.801	0.540	0.321	nan	0.325	0.107	0.530	1.741	2.321	1.630	9.133	2.882	0.817	nan	0.744	nan	0.431	1.109	0.853	0.809	0.875	1.377	0.597	0.452	nan
8598	chr2	120784576	120787414	+	0	NA	exon (NM_001024856, exon 6 of 16)	exon (NM_001024856, exon 6 of 16)	-54478	NM_026891	68968	Mm.2289	NM_026891	ENSMUSG00000027284	Cdan1	1500015A01Rik|AI448026|AW492297|CDA-I|CDA1|CDAI	congenital dyserythropoietic anemia, type I (human)	protein-coding	5.420	0.808	0.347	3.097	1.523	0.650	3.073	1.914	4.466	3.478	0.845	0.675	6.405	3.622	3.260	4.972	6.343	6.744	0.822	0.753	0.313	0.653	0.866	0.527	3.140
7697	chr19	30199281	30200519	+	0	NA	Intergenic	Lx5|LINE|L1	-24459	NM_138595	104174	Mm.274852	NM_138595	ENSMUSG00000024827	Gldc	D030049L12Rik|D19Wsu57e	glycine decarboxylase	protein-coding	3.666	1.067	1.030	nan	1.547	0.685	4.583	6.417	3.128	2.026	nan	3.947	1.866	4.951	3.018	3.374	3.419	3.051	nan	0.553	0.007	0.697	nan	0.013	1.943
6487	chr17	28936176	28939709	+	0	NA	intron (NM_153390, intron 2 of 2)	IAPEz-int|LTR|ERVK	4320	NM_153390	69307	Mm.107605	NM_153390	ENSMUSG00000045378	Pxt1	1700001G18Rik|Stepp	peroxisomal, testis specific 1	protein-coding	5.535	10.537	3.932	7.659	4.916	4.011	7.918	7.677	4.500	12.046	5.259	3.124	5.721	8.130	6.885	9.562	6.243	6.426	5.893	2.223	3.836	6.173	4.102	6.095	11.887
15711	chrX	38471344	38472970	+	0	NA	Intergenic	RMER10B|LTR|ERVL	-15697	NM_001290485	16784	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	0.225	0.266	0.256	0.189	0.174			0.214	0.122	0.369	0.050		0.034	0.098	0.049	0.448	0.669	0.279	4.901	4.133	1.864	4.502	4.559	3.193	0.097
13154	chr7	51782043	51792565	+	0	NA	Intergenic	Intergenic	-74711	NM_001330608	14453	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	1.248	11.055	4.193	2.286	1.334	0.806	1.148	1.905	1.193	1.875	0.653	0.492	1.755	2.454	1.819	2.200	1.437	2.027	0.657	0.658	0.606	1.014	0.370	0.326	2.338
11456	chr5	93578645	93582542	+	0	NA	Intergenic	ID_B1|SINE|B4	90870	NM_001164284	381654	Mm.326591	NM_001164284	ENSMUSG00000070686	C87414	-	expressed sequence C87414	protein-coding	3.967	2.381	1.087	3.503	1.625	0.532	2.585	2.820	2.367	2.884	1.643	1.260	2.861	3.534	6.476	4.468	2.685	3.699	1.390	1.389	0.768	1.331	1.360	0.506	6.023
1907	chr11	4021502	4024003	+	0	NA	Intergenic	MTC|LTR|ERVL-MaLR	-9030	NM_146013	103655	Mm.337476	NM_146013	ENSMUSG00000019368	Sec14l4	AI256582|AW536553|SPF|TAP	SEC14-like lipid binding 4	protein-coding	3.763	3.656	0.698	5.203	1.739	0.418	3.754	2.697	3.859	4.869	1.061	1.054	3.280	5.308	4.237	4.877	2.872	5.529	1.054	nan	0.601	0.785	0.613	0.407	3.991
4961	chr14	120674317	120679808	+	0	NA	Intergenic	Lx7|LINE|L1	198601	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	10.214	7.446	2.537	11.878	5.529	2.270	6.473	11.917	8.105	8.766	8.376	5.171	8.634	12.401	12.149	12.235	6.498	11.662	9.125	3.134	1.814	8.262	5.064	3.428	11.835
8083	chr2	30120267	30123584	+	0	NA	intron (NM_001290503, intron 1 of 15)	MIR3|SINE|MIR	2686	NM_178694	227693	Mm.44526	NM_178694	ENSMUSG00000039686	Zer1	C230075L19Rik|Zyg11bl	zyg-11 related, cell cycle regulator	protein-coding	8.420	4.438	1.829	8.417	4.142	2.148	6.117	9.722	4.950	5.931	7.369	2.861	6.755	7.888	6.735	6.579	3.235	5.884	1.413	1.580	1.085	3.162	0.732	0.826	7.333
12814	chr6	137555950	137561661	+	0	NA	intron (NM_001271588, intron 1 of 20)	intron (NM_001271588, intron 1 of 20)	12204	NM_001271595	13860	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.665	0.310	0.388	0.559	0.151	0.172	0.471	0.521	0.999	0.808	0.366	0.631	0.634	0.428	nan	1.702	0.974	1.258	4.443	2.700	1.803	6.397	4.337	3.482	nan
11716	chr5	124696147	124698887	+	0	NA	intron (NM_011596, intron 9 of 19)	intron (NM_011596, intron 9 of 19)	-27568	NM_019536	56087	Mm.261014	NM_019536	ENSMUSG00000038011	Dnah10	Dnahc10	dynein, axonemal, heavy chain 10	protein-coding	2.406	1.240	0.571	3.633	1.152	0.364	1.461	0.992	2.478	nan	0.835	0.508	1.288	2.335	nan	2.453	nan	3.059	4.214	6.703	3.448	6.591	8.835	5.323	nan
854	chr1	169322289	169324493	+	0	NA	Intergenic	Intergenic	208073	NM_023284	66977	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	8.685	3.231	1.323	6.895	2.120	1.010	8.136	9.076	5.513	6.748	5.692	3.079	9.224	8.787	8.450	14.274	8.375	9.019	2.230	1.945	1.322	nan	nan	1.747	9.899
11359	chr5	75088019	75090319	+	0	NA	Intergenic	B3|SINE|B2	13568	NM_133256	14843	Mm.218752	NM_133256	ENSMUSG00000035946	Gsx2	Gsh-2|Gsh2	GS homeobox 2	protein-coding	1.561	0.427	0.308	1.235	0.973	0.160	4.838	3.015	1.451	2.001	1.870	0.912	1.901	1.634	2.500	4.368	2.059	2.500	0.738	0.184	0.218	0.651	0.822	0.403	2.442
3120	chr11	120611659	120613345	+	0	NA	exon (NM_024229, exon 8 of 14)	exon (NM_024229, exon 8 of 14)	4025	NM_001347616	208990	Mm.29444	NM_153288	ENSMUSG00000044034	Npb	-	neuropeptide B	protein-coding	1.194	nan	0.262	2.460	1.592	0.931	1.664	2.902	2.341	2.859	4.078	3.020	3.506	3.648	2.399	2.382	1.907	2.817	1.053	nan	0.654	1.017	1.352	0.802	1.314
6072	chr16	42873714	42877161	+	0	NA	non-coding (NR_040521, exon 1 of 4)	non-coding (NR_040521, exon 1 of 4)	150	NR_040521	75722	Mm.243747	NR_040521	ENSMUSG00000075070	4932412D23Rik	ENSMUSG00000075070|Gm10809	RIKEN cDNA 4932412D23 gene	ncRNA	9.550	7.968	4.693	7.776	5.669	4.219	7.318	9.063	6.742	9.777	5.110	3.281	8.853	10.154	6.508	8.788	9.186	8.752	6.427	5.069	3.889	5.740	6.055	5.723	9.780
14771	chr8	127018468	127020874	+	0	NA	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	-44385	NM_033620	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0.216	nan	0.204	nan	0.112	0.143	nan	nan	0.143	0.367	0.077	0.041	0.206	0.194	nan	0.565	0.675	nan	7.251	4.791	5.642	10.580	6.210	nan	nan
3769	chr12	114056586	114058648	+	0	NA	Intergenic	L1_Mus3|LINE|L1	411849	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	3.957	1.444	0.918	2.064	2.431	1.426	2.228	1.577	2.031	2.513	1.451	0.744	2.505	5.126	2.034	2.694	2.036	3.346	0.677	0.757	0.475	0.911	0.588	0.520	4.805
6575	chr17	35029929	35032198	+	0	NA	intron (NM_013600, intron 18 of 23)	intron (NM_013600, intron 18 of 23)	-3047	NM_023893	78376	Mm.390966	NM_023893	ENSMUSG00000036185	Sapcd1	2810436B06Rik|G7d|Ng23	suppressor APC domain containing 1	protein-coding	nan	7.013	2.462	4.530	2.197	1.487	6.096	3.780	3.043	7.094	2.722	1.953	3.800	6.488	6.628	7.918	4.280	5.511	3.364	1.580	2.047	4.248	1.956	2.712	9.671
14547	chr8	108381486	108385533	+	0	NA	Intergenic	Intergenic	201168	NR_077224	109215	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	6.155	5.885	2.265	6.310	5.047	4.199	3.958	6.683	3.634	5.565	4.134	2.205	4.784	6.023	5.666	7.740	5.092	5.487	3.079	3.011	3.191	5.334	2.683	3.260	8.998
10533	chr4	126934699	126936329	+	0	NA	intron (NM_001114399, intron 2 of 29)	intron (NM_001114399, intron 2 of 29)	32409	NM_001114399	67785	Mm.165401	NM_001114399	ENSMUSG00000042446	Zmym4	6330503C17Rik|AI480785|AW493829|CDIR|D630001M21|MYM|Zfp262|Znf262|mKIAA0425	zinc finger, MYM-type 4	protein-coding	4.025	1.547	1.037	5.527	2.762	1.882	1.073	0.723	2.509	2.356	0.843	0.854	0.752	1.802	1.256	2.020	1.164	3.355	0.973	1.760	2.093	1.216	0.891	0.887	2.026
12069	chr6	17230201	17234645	+	0	NA	Intergenic	RMER1C|Other|Other	34316	NR_102304	319682	Mm.136046	NR_102304	ENSMUSG00000085171	D830026I12Rik	-	RIKEN cDNA D830026I12 gene	ncRNA	7.388	nan	0.548	6.906	3.898	2.514	6.131	8.602	4.362	4.478	7.122	4.055	6.082	6.403	6.873	7.800	3.899	8.201	2.852	1.710	1.326	3.051	2.575	2.028	5.629
4023	chr13	41544025	41546281	+	0	NA	Intergenic	Lx|LINE|L1	-57793	NM_001111324	18003	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	2.773	1.389	0.912	2.738	3.183	0.924	nan	3.030	3.531	3.211	1.746	1.307	1.516	4.906	2.831	2.800	1.004	3.408	1.215	0.827	0.428	1.594	0.926	0.227	2.125
15858	chrX	160450942	160453536	+	0	NA	intron (NM_001079848, intron 3 of 25)	LTR33A|LTR|ERVL	-49927	NM_001177879	110094	Mm.350712	NM_172783	ENSMUSG00000031295	Phka2	6330505C01Rik|D330034O08|Phk	phosphorylase kinase alpha 2	protein-coding	1.006	1.101	0.564	1.266	1.111	0.736	0.804	1.498	1.781	1.574	4.374	2.801	1.450	1.965	0.771	0.848	0.614	1.044	0.759	0.308	0.454	0.501	0.251	0.221	0.523
3020	chr11	116961902	116966123	+	0	NA	intron (NM_172948, intron 8 of 16)	B4A|SINE|B4	45149	NM_172948	268510	Mm.35141	NM_172948	ENSMUSG00000043857	Mgat5b	C330018B01|GnT-IX|mGnTVB	mannoside acetylglucosaminyltransferase 5, isoenzyme B	protein-coding	4.004	nan	1.442	6.268	2.133	2.164	2.909	2.963	3.340	3.203	2.614	1.611	3.072	3.749	3.471	4.015	2.083	nan	1.085	nan	1.337	1.298	0.814	0.766	4.401
14116	chr8	32259123	32261927	+	0	NA	Intergenic	Intergenic	108630	NR_046039	666589	Mm.367675	NR_046039		Gm8179	EG666589	predicted gene 8179	ncRNA	5.410	8.028	3.597	6.461	4.811	3.667	5.452	5.763	4.496	4.218	3.835	2.509	8.576	8.280	8.132	6.704	4.663	5.905	2.750	2.053	2.333	3.950	2.026	2.442	6.923
14069	chr8	23586705	23589218	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-81700	NM_001277239	320158	Mm.121274	NM_177086	ENSMUSG00000037492	Zmat4	9630048M01Rik	zinc finger, matrin type 4	protein-coding	9.519	12.048	4.470	9.047	6.151	3.159	6.023	9.842	4.750	14.375	7.601	4.533	8.761	10.516	9.057	11.481	8.837	8.018	3.923	2.652	3.401	5.702	2.133	4.133	13.478
14915	chr9	22029150	22031656	+	0	NA	intron (NM_010487, intron 3 of 6)	RMER15|LTR|ERVL	21620	NM_010487	15571	Mm.390167	NM_010487	ENSMUSG00000003410	Elavl3	2600009P04Rik|Huc|PLE21|mHuC	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	protein-coding	7.177	6.962	4.439	8.025	5.706	4.404	3.951	5.795	5.657	8.190	6.062	5.950	3.911	6.580	3.968	4.486	5.316	5.337	3.459	3.086	3.388	2.930	3.081	4.107	8.998
3550	chr12	85349964	85352495	+	0	NA	intron (NM_026775, intron 2 of 4)	intron (NM_026775, intron 2 of 4)	-11867	NM_145138	217718	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	5.637	1.373	0.511	5.161	3.265	2.845	1.424	4.093	2.946	4.303	1.177	0.846	3.634	3.311	5.841	4.781	4.131	3.883	0.585	0.831	1.428	1.571	0.598	0.606	5.229
7276	chr18	58826800	58829474	+	0	NA	Intergenic	Intergenic	-8226	NM_175506	240322	Mm.71963	NM_175506	ENSMUSG00000053441	Adamts19	4831407I23Rik|AU015154|D230034E10Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 19	protein-coding	5.803	nan	0.396	nan	0.985	0.287	1.812	4.068	1.794	2.466	1.707	0.442	3.123	3.462	1.667	2.723	2.988	1.636	nan	1.026	0.780	nan	0.976	0.245	6.954
4392	chr13	110068044	110069979	+	0	NA	intron (NM_023852, intron 4 of 4)	RLTR33|LTR|ERVK	165202	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	2.386	nan	0.199	3.550	6.154	3.440	2.514	1.270	nan	4.003	6.046	3.953	1.341	3.064	2.475	3.126	1.416	nan	1.202	1.464	0.704	nan	0.695	0.547	1.133
15200	chr9	64866311	64871164	+	0	NA	intron (NM_001162917, intron 14 of 34)	intron (NM_001162917, intron 14 of 34)	57726	NM_001162917	102442	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	6.797	6.426	2.128	6.733	2.490	2.188	3.359	6.866	3.961	7.053	3.110	2.140	5.654	8.954	7.200	7.360	4.307	7.434	nan	2.501	1.591	3.952	2.214	1.964	10.192
5989	chr16	31169255	31171773	+	0	NA	intron (NM_030138, intron 1 of 22)	B3A|SINE|B2	30724	NM_030138	78618	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	3.461	0.787	0.855	1.423	2.238	1.436	3.392	4.600	1.340	1.513	2.608	4.685	2.128	1.848	1.711	1.682	2.411	2.688	3.536	3.411	2.781	1.417	7.960	6.522	2.181
3034	chr11	117205305	117208279	+	0	NA	intron (NM_001113486, intron 1 of 11)	MTEb|LTR|ERVL-MaLR	7131	NM_001113486	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	3.369	nan	1.429	2.590	1.475	0.562	nan	2.040	1.194	nan	2.226	1.382	1.449	2.342	2.518	3.422	1.195	2.600	1.301	nan	0.591	1.371	0.431	0.415	3.665
13118	chr7	31857920	31862321	+	0	NA	Intergenic	L1Md_T|LINE|L1	147455	NM_001270542	626305	Mm.454021	NM_001270542	ENSMUSG00000078759	Scgb1b7	ABPA7_A29|Abpa29|Abpa7|EG626305|Gm6662	secretoglobin, family 1B, member 7	protein-coding	1.074	0.923	0.585	0.547	0.700	0.179	2.484	5.019	2.162	1.845	8.205	4.374	1.361	1.110	2.108	2.921	1.716	3.016	0.834	0.981	0.512	1.382	1.357	0.873	1.607
2891	chr11	106076714	106080352	+	0	NA	Intergenic	B2_Mm1t|SINE|B2	-6369	NM_011947	26406	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	8.363	9.956	4.672	6.822	6.538	4.762	5.985	6.957	nan	7.437	6.165	3.943	6.187	8.985	7.101	8.330	6.323	6.905	4.979	4.271	3.662	nan	4.647	4.117	8.818
14661	chr8	120942773	120948626	+	0	NA	Intergenic	(TCCA)n|Simple_repeat|Simple_repeat	137411	NR_045471	68790	Mm.246916	NR_045471	ENSMUSG00000097336	Fendrr	1110050K14Rik|LL66|linc-Foxf1a|lincFoxf1	Foxf1 adjacent non-coding developmental regulatory RNA	ncRNA	0.442	0.441	0.269	0.338	0.289	0.021	0.322	0.297	0.296	0.312	0.421	0.378	0.160	0.312	0.295	nan	0.247	0.304	1.568	1.015	0.528	6.668	1.059	0.628	0.502
9559	chr3	96071478	96074232	+	0	NA	Intergenic	(CGGT)n|Simple_repeat|Simple_repeat	-7741	NR_035496	100316714		NR_035496	ENSMUSG00000088478	Mir1946b	mmu-mir-1946b	microRNA 1946b	ncRNA	6.691	10.295	3.245	8.200	3.797	2.242	4.627	5.298	6.175	4.995	nan	2.678	8.163	8.124	8.667	nan	5.752	9.500	5.650	3.056	4.036	7.294	3.171	3.883	8.809
1520	chr10	80818889	80823037	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-5693	NM_001301034	18245	Mm.398119	NM_008753	ENSMUSG00000035242	Oaz1	AZ-1|AZ1|Antizyme|ODC-Az|Oaz	ornithine decarboxylase antizyme 1	protein-coding	6.129	5.783	2.270	5.836	3.178	1.993	3.531	4.499	3.152	6.152	1.897	1.949	3.220	5.557	5.355	5.018	2.717	5.341	nan	2.003	1.227	2.591	2.074	1.887	7.644
303	chr1	74334038	74337531	+	0	NA	intron (NM_019999, intron 1 of 8)	intron (NM_019999, intron 1 of 8)	3174	NM_019999	56695	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	3.471	3.174	1.181	4.015	1.872	1.189	2.191	2.845	2.233	1.910	2.281	1.410	1.478	2.724	2.641	3.942	1.885	3.745	nan	nan	0.632	1.364	nan	0.382	3.256
6268	chr16	96185624	96189822	+	0	NA	intron (NM_001001492, intron 1 of 10)	intron (NM_001001492, intron 1 of 10)	4534	NM_001001492	385668	Mm.24626	NM_001001492	ENSMUSG00000045275	Lca5l	4921526F01Rik|Lcca5l	Leber congenital amaurosis 5-like	protein-coding	2.677	0.686	0.414	1.058	1.710	0.757	4.417	3.200	nan	1.847	1.653	0.897	3.874	4.802	3.118	2.942	1.353	nan	nan	0.510	0.382	0.742	0.523	0.594	2.045
614	chr1	134057232	134059563	+	0	NA	Intergenic	Intergenic	20758	NM_007570	12227	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	1.456	0.548	0.436	3.127	2.644	1.587	2.206	0.907	2.726	3.075	8.287	2.111	1.900	2.745	1.886	2.528	1.598	2.970	1.628	0.886	1.257	1.664	1.577	1.430	nan
6931	chr17	85423179	85427994	+	0	NA	intron (NM_028576, intron 7 of 10)	L1_Mus3|LINE|L1	192810	NR_038084	100043902	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	2.070	0.706	0.359	1.194	0.784	0.822	5.720	5.003	nan	2.908	0.648	0.865	3.842	4.538	4.087	3.199	2.945	2.595	0.812	0.542	0.320	0.914	0.600	0.397	1.697
2963	chr11	113414255	113417785	+	0	NA	intron (NM_027216, intron 5 of 9)	intron (NM_027216, intron 5 of 9)	149795	NM_001166503	69806	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	0.435	nan	0.368	0.585	0.534	0.410	nan	nan	0.693	nan	0.899	0.540	0.691	0.589	0.789	0.927	0.602	nan	2.101	nan	0.858	4.124	1.230	0.961	0.822
1765	chr10	116706555	116708382	+	0	NA	Intergenic	Intergenic	21709	NR_045345	72286	Mm.396207	NR_045345	ENSMUSG00000100198	1700030O20Rik	-	RIKEN cDNA 1700030O20 gene	ncRNA	2.039	0.475	1.020	1.518	2.396	1.535	1.336	1.251	2.386	2.122	0.536	0.278	1.065	3.169	1.121	1.495	2.850	2.123	0.880	1.513	1.379	0.286	1.753	2.029	1.018
6521	chr17	30956014	30959663	+	0	NA	intron (NM_177465, intron 1 of 21)	(TG)n|Simple_repeat|Simple_repeat	3155	NM_177465	52020	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	1.230	0.436	0.309	0.471	0.292	0.107	0.356	0.284	0.234	0.286	0.207	1.363	0.228	0.198	0.236	nan	0.603	0.568	1.517	1.561	1.557	3.633	0.991	0.865	0.544
6446	chr17	27183472	27191057	+	0	NA	Intergenic	Intergenic	17174	NM_146075	224640	Mm.29689	NM_146075	ENSMUSG00000044857	Lemd2	BC026588|Lem2|NET25	LEM domain containing 2	protein-coding	2.262	2.003	0.863	2.571	1.842	1.349	5.018	5.474	2.675	2.819	5.552	3.494	3.061	5.086	4.209	nan	2.886	3.296	0.634	0.594	0.660	0.964	0.482	0.422	3.670
12421	chr6	88467076	88469869	+	0	NA	intron (NM_019685, intron 2 of 10)	intron (NM_019685, intron 2 of 10)	3063	NM_019685	56505	Mm.42195	NM_019685	ENSMUSG00000030079	Ruvbl1	2510009G06Rik|Pontin52|Tip49a	RuvB-like protein 1	protein-coding	7.606	10.209	3.874	8.718	3.436	2.303	8.099	9.696	4.348	7.362	4.264	4.280	7.723	9.288	10.760	12.290	5.894	8.326	nan	3.015	2.712	6.826	3.371	3.033	10.861
7741	chr19	37219357	37221579	+	0	NA	exon (NM_027314, exon 4 of 6)	exon (NM_027314, exon 4 of 6)	12923	NM_001164336	69104	Mm.175989	NM_027314	ENSMUSG00000023307	March5	1810015H18Rik|2310008I22Rik|2700055A20Rik|5730499H23Rik|E130202O05Rik|MARCH-V|MITOL|Marchv|Rnf153	membrane-associated ring finger (C3HC4) 5	protein-coding	2.115	0.653	0.524	1.702	2.611	2.721	1.465	nan	2.267	2.939	0.626	0.553	1.998	3.957	1.543	1.298	nan	3.251	0.600	0.609	0.276	0.617	0.991	0.872	1.545
9017	chr2	167246474	167248240	+	0	NA	Intergenic	Intergenic	-6820	NM_008968	19223	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	12.408	18.829	6.758	13.626	7.795	5.988	10.374	11.549	5.879	10.812	9.728	6.617	8.152	10.439	10.369	11.057	10.430	10.737	7.184	5.582	6.003	8.381	5.829	7.440	16.318
12783	chr6	134747411	134758244	+	0	NA	intron (NM_001048054, intron 3 of 6)	intron (NM_001048054, intron 3 of 6)	39801	NM_130447	70686	Mm.491182	NM_130447	ENSMUSG00000030203	Dusp16	3830417M17Rik|AW558566|D6Ertd213e|MKP-7|MKP7|Mkpm	dual specificity phosphatase 16	protein-coding	4.048	1.329	1.116	3.867	5.366	3.286	3.976	5.738	4.829	4.995	4.955	3.667	4.868	6.592	nan	6.349	5.272	6.727	nan	2.244	1.641	4.457	1.594	1.263	nan
6850	chr17	73604789	73609466	+	0	NA	intron (NM_027864, intron 1 of 14)	(TG)n|Simple_repeat|Simple_repeat	103324	NM_027864	71685	Mm.271953	NM_027864	ENSMUSG00000024064	Galnt14	0610033M06Rik	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14	protein-coding	0.327	2.718	1.132	0.552	0.270	0.212	nan	nan	nan	0.431	0.221	0.194	0.095	0.345	0.349	nan	0.441	0.626	3.872	1.658	1.265	4.226	2.520	2.005	0.645
10879	chr4	148014326	148016402	+	0	NA	intron (NM_011929, intron 13 of 22)	intron (NM_011929, intron 13 of 22)	14642	NM_008725	230899	Mm.482123	NM_008725	ENSMUSG00000041616	Nppa	ANP|Anf|Pnd	natriuretic peptide type A	protein-coding	2.934	nan	0.964	0.886	1.293	1.190	5.642	3.073	2.101	2.676	0.234	0.484	4.069	4.459	3.194	3.558	2.401	2.030	0.933	0.661	0.697	0.848	2.116	1.788	2.639
5046	chr15	10688106	10692078	+	0	NA	intron (NM_001166408, intron 2 of 17)	intron (NM_001166408, intron 2 of 17)	23448	NM_030690	75646	Mm.212395	NM_030690	ENSMUSG00000022246	Rai14	1700008J19Rik|1700020L11Rik|Ankycorbin|Norpeg|mKIAA1334	retinoic acid induced 14	protein-coding	7.054	0.692	0.403	4.556	8.533	6.351	11.481	11.292	7.926	8.970	4.232	4.437	12.973	14.611	10.603	9.789	8.863	9.218	0.616	0.537	0.306	0.520	0.284	0.344	7.422
7091	chr18	25867124	25884241	+	0	NA	Intergenic	L1_Mus3|LINE|L1	-121699	NM_001174074	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	5.163	0.518	0.271	1.086	1.206	0.700	8.578	8.073	3.877	4.177	1.193	2.251	8.620	5.355	6.951	7.476	5.995	5.614	nan	1.949	1.104	nan	3.203	2.333	9.187
6005	chr16	32601272	32603703	+	0	NA	Intergenic	Intergenic	-6409	NM_011638	22042	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	2.642	0.817	0.483	1.730	3.635	2.720	3.016	2.714	3.330	3.972	0.761	0.463	4.766	6.015	3.015	6.329	4.347	3.396	0.904	0.817	0.793	0.470	nan	1.133	4.935
6436	chr17	26737596	26740373	+	0	NA	intron (NM_029870, intron 2 of 8)	B1_Mm|SINE|Alu	23334	NM_029870	77128	Mm.275414	NM_029870	ENSMUSG00000048249	Crebrf	A930001N09Rik|LRF	CREB3 regulatory factor	protein-coding	5.161	1.876	0.516	6.472	3.446	1.183	3.410	5.966	3.552	3.671	4.063	2.261	2.885	5.310	4.095	3.670	1.681	5.286	1.123	0.894	0.673	2.154	0.851	0.237	4.342
6320	chr17	7406596	7410076	+	0	NA	Intergenic	MTC|LTR|ERVL-MaLR	-23031	NM_001142539	667055	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	ENSMUSG00000056133	predicted gene 9992	protein-coding	0.539	0.761	0.523	0.690	0.164	0.069	0.533	0.570	0.298	0.557	0.416	0.144	0.112	0.418	0.771	nan	nan	0.661	nan	0.783	0.652	3.745	0.666	0.388	0.620
9086	chr2	174584873	174588087	+	0	NA	Intergenic	Intergenic	-57054	NM_001099328	100043757	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	ENSMUSG00000050600|OTTMUSG00000017459	zinc finger protein 831	protein-coding	2.338	1.051	0.241	2.278	0.430	0.464	2.685	1.136	1.723	4.819	0.298	0.149	3.541	4.557	3.347	4.945	2.354	4.449	1.341	1.414	1.125	1.322	1.221	1.590	5.502
1302	chr10	57813755	57817708	+	0	NA	Intergenic	Intergenic	21187	NM_020561	57319	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	8.124	6.525	4.658	3.413	3.394	1.366	3.400	5.649	3.740	3.076	2.981	1.912	4.479	5.539	5.380	4.393	5.268	4.967	nan	1.531	1.233	0.977	1.237	1.037	nan
9971	chr4	33115640	33120323	+	0	NA	Intergenic	RLTR12BD_Mm|LTR|ERVK	-14575	NM_008075	14408	Mm.14116	NM_008075	ENSMUSG00000028280	Gabrr1	GABA-C	gamma-aminobutyric acid (GABA) C receptor, subunit rho 1	protein-coding	nan	14.397	5.590	6.499	3.499	2.148	2.863	3.681	3.250	7.352	4.083	2.724	3.334	4.156	4.649	nan	3.173	nan	4.404	2.146	1.770	3.007	2.042	2.276	6.761
2239	chr11	57784385	57787632	+	0	NA	3' UTR (NM_134189, exon 12 of 12)	3' UTR (NM_134189, exon 12 of 12)	15459	NR_131042	76516	Mm.28485	NR_131042	ENSMUSG00000087165	2010001A14Rik	-	RIKEN cDNA 2010001A14 gene	ncRNA	6.296	0.896	0.507	3.606	4.955	3.691	6.805	4.883	2.456	4.778	2.673	1.472	4.936	7.790	4.613	5.836	5.283	5.310	nan	0.897	1.552	1.445	1.528	1.815	7.437
7488	chr19	5429049	5434407	+	0	NA	Intergenic	Intergenic	6584	NM_001256515	107242	Mm.329658	NM_134149	ENSMUSG00000047423	AI837181	Bles03|N28173	expressed sequence AI837181	protein-coding	2.859	2.610	0.681	3.967	3.477	1.235	4.192	5.397	2.380	3.018	2.187	1.575	3.107	6.123	4.689	3.957	1.963	3.896	1.376	1.581	0.654	4.155	1.208	0.757	5.044
12456	chr6	91101727	91110594	+	0	NA	intron (NM_018815, intron 1 of 39)	ORR1C1|LTR|ERVL-MaLR	10666	NM_018815	54563	Mm.28162	NM_018815	ENSMUSG00000030091	Nup210	9830001L10|AI836801|Pom210|gp190|gp210	nucleoporin 210	protein-coding	1.110	2.008	0.726	nan	0.816	0.305	1.604	1.702	0.582	0.998	0.524	0.690	1.032	1.263	1.295	2.441	1.656	nan	nan	3.084	2.216	6.955	5.036	3.894	1.569
8640	chr2	127343650	127351874	+	0	NA	intron (NM_001291003, intron 6 of 8)	intron (NM_001291003, intron 6 of 8)	6126	NM_001291003	215095	Mm.31313	NM_172539	ENSMUSG00000050468	Astl	7420700F21|C87576|Sas1b	astacin-like metalloendopeptidase (M12 family)	protein-coding	0.376	0.734	0.285	0.750	0.162	0.135	0.528	1.272	0.284	0.419	0.174	0.256	0.397	0.320	0.448	nan	0.519	0.579	5.697	2.155	1.331	6.791	2.862	1.808	0.911
10979	chr4	154430181	154433165	+	0	NA	intron (NM_001177995, intron 3 of 15)	(CAGAG)n|Simple_repeat|Simple_repeat	-131778	NM_001112744	230972	Mm.38481	NM_001112744	ENSMUSG00000029032	Arhgef16	-	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding	0.272	0.851	0.173	0.818	0.271		0.386	0.397	0.536	0.484	8.178	2.607	0.179	0.316	0.568	0.764	0.332	0.713	0.729	0.391	0.428	1.540	1.113	0.586	1.057
3341	chr12	56560170	56561524	+	0	NA	Intergenic	L1_Mus3|LINE|L1	-23939	NM_009385	21869	Mm.89972	NM_009385	ENSMUSG00000001496	Nkx2-1	AV026640|Nkx2.1|T/EBP|Titf1|Ttf-1	NK2 homeobox 1	protein-coding	4.625	2.224	1.065	3.744	2.110	2.269	3.066	4.982	2.668	2.359	2.555	2.370	2.929	4.473	3.388	3.772	2.601	3.931	2.350	2.518	1.728	2.636	3.221	1.891	3.144
3029	chr11	117124880	117132519	+	0	NA	TTS (NR_029459)	TTS (NR_029459)	13527	NM_001166506	74136	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	5.380	nan	1.043	5.023	2.535	1.891	nan	5.937	2.274	nan	3.172	2.766	2.151	5.234	4.566	3.544	1.891	3.745	3.178	nan	1.878	5.369	1.487	1.515	4.714
8145	chr2	32699575	32703401	+	0	NA	Intergenic	MIR|SINE|MIR	-7313	NM_010236	14287	Mm.3830	NM_010236	ENSMUSG00000009566	Fpgs	AA408187	folylpolyglutamyl synthetase	protein-coding	4.873	3.906	1.999	5.405	3.534	2.215	3.445	3.732	nan	4.467	1.816	1.899	2.705	4.308	3.327	4.722	3.458	3.608	5.629	4.516	3.738	5.631	6.001	4.830	6.662
13361	chr7	87195830	87208838	+	0	NA	Intergenic	RMER20A|LTR|ERVK	-44315	NM_001285835	50490	Mm.31748	NM_015760	ENSMUSG00000030562	Nox4	AI648021	NADPH oxidase 4	protein-coding	8.412	4.484	1.786	7.269	5.457	3.432	8.156	9.084	nan	7.239	5.253	2.601	9.177	10.169	8.591	nan	6.286	nan	3.561	2.142	2.024	nan	3.071	2.348	12.656
3587	chr12	87249319	87252301	+	0	NA	intron (NM_134044, intron 9 of 18)	intron (NM_134044, intron 9 of 18)	-12209	NM_027744	71275	Mm.79198	NM_027744	ENSMUSG00000072919	Noxred1	4933437F05Rik	NADP+ dependent oxidoreductase domain containing 1	protein-coding	1.342	0.798	1.041	0.594	0.732	0.481	0.739	0.617	0.857	0.871	0.675	0.548	0.291	0.605	0.451	nan	1.281	0.885	6.039	6.752	7.505	3.891	6.494	7.293	nan
4255	chr13	75934161	75937128	+	0	NA	intron (NM_028493, intron 3 of 11)	L1Md_F2|LINE|L1	8180	NM_028493	73296	Mm.276200	NM_028493	ENSMUSG00000021589	Rhobtb3	1700040C17Rik|2610033K01Rik|4930503C18Rik|AI317148|AW208826|mKIAA0878	Rho-related BTB domain containing 3	protein-coding	7.426	7.929	3.672	5.261	6.106	4.525	6.088	4.857	4.882	4.957	4.667	3.261	6.415	7.801	7.090	5.753	2.700	6.187	2.048	1.905	1.594	2.671	1.228	1.004	6.450
11867	chr5	139468383	139472645	+	0	NA	TTS (NM_001159908)	TTS (NM_001159908)	-9980	NM_028469	73212	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	5.360	4.045	0.633	9.653	2.196	1.614	7.130	6.763	4.662	12.922	6.014	3.340	7.275	8.373	8.369	9.355	5.734	8.973	4.991	1.329	1.985	4.824	nan	5.094	15.852
1879	chr11	3023152	3024323	+	0	NA	Intergenic	Intergenic	-100284	NR_003517	236604	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	4.667	6.403	2.100	6.151	2.649	1.406	3.179	3.402	3.846	5.824	4.448	3.108	3.789	4.263	4.398	5.901	4.350	5.796	3.521	nan	2.258	3.644	1.830	2.457	6.530
11196	chr5	37457844	37460377	+	0	NA	intron (NM_022416, intron 9 of 11)	intron (NM_022416, intron 9 of 11)	120632	NM_145920	68525	Mm.25506	NM_145920	ENSMUSG00000050248	Evc2	1110017L09Rik|Lbn|limbin	Ellis van Creveld syndrome 2	protein-coding	1.252	12.073	7.150	1.174	0.468	0.631	0.477	1.059	0.760	1.002	0.586	0.755	0.316	0.371	nan	0.604	nan	nan	0.881	1.806	1.065	0.371	1.050	0.705	0.722
2917	chr11	106882245	106890186	+	0	NA	intron (NM_025481, intron 1 of 18)	MIR|SINE|MIR	34500	NM_025481	66313	Mm.340955	NM_025481	ENSMUSG00000018363	Smurf2	2810411E22Rik|AI558114|AI649275	SMAD specific E3 ubiquitin protein ligase 2	protein-coding	7.159	2.809	1.570	nan	4.262	3.478	10.780	7.960	nan	nan	4.838	3.522	7.110	9.834	7.420	8.904	7.957	nan	1.861	1.683	2.166	nan	2.084	2.133	7.548
2342	chr11	67783574	67790053	+	0	NA	intron (NM_001347057, intron 4 of 4)	A-rich|Low_complexity|Low_complexity	-11458	NM_001013013	68460	Mm.22167	NM_001013013	ENSMUSG00000033044	Dhrs7c	1110001P11Rik|AI120487|SRP-35	dehydrogenase/reductase (SDR family) member 7C	protein-coding	4.187	0.812	0.652	2.318	2.638	1.676	4.263	1.489	2.496	2.948	0.602	0.602	4.029	5.438	4.775	4.828	3.905	3.828	0.722	0.738	0.288	0.440	nan	0.452	nan
13054	chr7	28964056	28965661	+	0	NA	Intergenic	RSINE1|SINE|B4	-2578	NM_021895	60595	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	6.277	6.328	1.532	7.861	2.054	1.751	6.220	7.087	2.658	8.089	3.234	2.828	6.264	7.427	7.462	8.472	5.396	6.232	4.178	1.392	1.982	4.610	2.283	3.985	14.530
3516	chr12	81344214	81346580	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-12217	NM_080440	110893	Mm.443748	NM_080440	ENSMUSG00000079055	Slc8a3	AW742262|Ncx3	solute carrier family 8 (sodium/calcium exchanger), member 3	protein-coding	5.834	1.019	0.461	4.902	3.983	2.319	5.717	5.692	4.776	5.031	7.601	3.383	6.120	7.605	7.989	8.757	3.823	7.938	1.260	0.759	0.702	0.993	0.823	0.443	11.761
832	chr1	166436504	166438041	+	0	NA	Intergenic	Intergenic	-27444	NM_001142948	71592	Mm.192094	NM_175170	ENSMUSG00000040596	Pogk	9130401E23Rik|BASS2|mKIAA1513	pogo transposable element with KRAB domain	protein-coding	2.797	0.708	0.418	nan	2.687	0.632	2.250	2.175	3.248	2.931	1.004	1.983	3.121	3.597	2.827	5.678	2.839	3.093	1.210	0.925	0.721	1.882	nan	0.403	1.556
13620	chr7	119518655	119520495	+	0	NA	intron (NM_027943, intron 2 of 11)	intron (NM_027943, intron 2 of 11)	3907	NM_027943	71830	Mm.84631	NM_027943	ENSMUSG00000030968	Pdilt	1700007B13Rik	protein disulfide isomerase-like, testis expressed	protein-coding	2.988	1.282	0.355	3.027	2.919	1.713	4.871	3.850	1.981	2.759	1.920	1.100	2.763	4.549	4.099	3.847	2.056	4.023	0.784	0.772	0.527	0.788	1.101	0.544	4.575
11402	chr5	89704930	89708675	+	0	NA	intron (NM_001081401, intron 9 of 21)	intron (NM_001081401, intron 9 of 21)	90366	NR_037571	631105	Mm.7732	NR_037571		Gm7056	Gm149	predicted gene 7056	ncRNA	6.399	0.599	0.337	4.133	7.182	4.978	8.948	7.599	7.452	9.619	5.711	5.152	8.402	10.352	7.793	7.081	6.688	7.742	0.638	0.683	0.348	0.876	1.675	1.166	5.306
2135	chr11	48805481	48808133	+	0	NA	TTS (NM_008143)	TTS (NM_008143)	3668	NR_028564	100216540		NR_028564	ENSMUSG00000064780	Snord95	-	small nucleolar RNA, C/D box 95	snoRNA	4.630	5.927	3.892	4.747	4.789	2.187	2.279	2.342	3.806	3.381	2.125	1.252	3.252	3.377	2.484	nan	2.159	nan	nan	1.253	0.947	nan	nan	0.464	3.159
828	chr1	166349382	166350393	+	0	NA	Intergenic	L1_Rod|LINE|L1	-29280	NM_030245	27878	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	3.865	0.309	0.264	nan	0.398	0.154	2.120	2.889	2.800	1.314	0.921	1.081	4.760	3.376	nan	4.312	2.512	2.243	0.649	0.282	0.151	nan	nan	0.120	nan
14423	chr8	87984961	87986700	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	-26235	NM_033327	94187	Mm.23452	NM_033327	ENSMUSG00000045333	Zfp423	Ebfaz|Roaz|Zfp104|Znf423|ataxia1|mKIAA0760|nur12	zinc finger protein 423	protein-coding	7.171	0.590	0.748	1.572	1.752	1.202	3.686	6.468	2.193	2.786	2.258	1.149	7.515	4.255	3.988	7.069	6.253	4.321	nan	2.166	1.434	2.133	1.158	0.907	5.936
1831	chr10	126413977	126425626	+	0	NA	Intergenic	B3A|SINE|B2	290590	NR_105841	102465224		NR_105841	ENSMUSG00000098756	Mir378d	Gm27650|mmu-mir-378d	microRNA 378d	ncRNA	6.282	nan	1.091	8.356	3.156	1.770	4.303	5.131	3.709	6.613	2.426	1.696	4.367	6.584	5.683	6.667	4.453	6.131	3.050	1.596	1.690	3.325	nan	2.908	8.751
15588	chr9	119878217	119883358	+	0	NA	Intergenic	RLTR19-int|LTR|ERVK	-14108	NM_026236	67561	Mm.104789	NM_026236	ENSMUSG00000032512	Wdr48	8430408H12Rik|Uaf1|mKIAA1449	WD repeat domain 48	protein-coding	1.928	2.537	0.883	2.806	1.051	0.492	1.697	4.209	1.308	1.734	1.091	0.763	1.979	2.780	2.740	2.943	1.438	2.404	1.892	1.743	1.141	4.738	nan	0.428	3.843
13371	chr7	87438400	87441898	+	0	NA	intron (NM_001317397, intron 2 of 3)	intron (NM_001317397, intron 2 of 3)	53363	NM_011661	22173	Mm.238127	NM_011661	ENSMUSG00000004651	Tyr	Oca1|albino|c|skc35	tyrosinase	protein-coding	2.671	6.001	3.507	2.460	2.525	3.170	2.415	4.097	nan	1.862	2.313	1.792	2.595	2.853	3.368	3.895	nan	3.149	4.210	2.428	5.065	nan	4.511	6.954	6.157
3949	chr13	34299288	34307967	+	0	NA	intron (NM_001033167, intron 2 of 10)	intron (NM_001033167, intron 2 of 10)	41555	NM_001033167	73102	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	3.277	nan	0.608	3.562	4.334	2.594	5.558	5.627	nan	4.272	3.890	3.990	5.062	5.959	6.054	6.731	2.638	6.040	1.765	1.188	0.684	2.435	2.102	1.547	3.951
6590	chr17	35329374	35333350	+	0	NA	Intergenic	MYSERV6-int|LTR|ERVK	10804	NM_010390	15006	Mm.466882	NM_010390	ENSMUSG00000079507	H2-Q1	H-2Q1|Q1|Q1b|Q1d|Q1k|Qa-1|Qa1|Qed-1	histocompatibility 2, Q region locus 1	protein-coding	3.480	22.298	7.783	4.356	2.357	1.384	2.646	2.166	2.363	3.693	3.450	1.540	1.250	1.941	2.871	3.086	2.046	2.639	1.639	2.564	3.249	1.799	1.881	1.832	4.087
6247	chr16	94746619	94749261	+	0	NA	TTS (NM_001025584)	TTS (NM_001025584)	108750	NM_001025590	16522	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding	11.082	10.465	4.069	8.327	5.607	3.978	7.586	10.903	5.654	9.045	8.088	4.322	9.185	9.950	8.986	10.697	7.163	8.379	6.405	4.174	5.096	5.314	4.833	4.510	13.432
8587	chr2	119924005	119926975	+	0	NA	intron (NM_001164274, intron 8 of 22)	intron (NM_001164274, intron 8 of 22)	28262	NM_013720	29808	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	5.554	1.637	1.052	5.193	4.288	3.656	4.282	4.812	4.147	4.857	2.436	1.846	3.928	5.858	5.148	6.927	4.418	5.447	1.233	1.494	1.568	1.041	0.728	0.981	5.626
8093	chr2	30608056	30611157	+	0	NA	TTS (NM_030137)	TTS (NM_030137)	14562	NM_030137	78617	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	5.779	1.305	1.003	6.739	7.674	6.544	6.022	10.526	5.085	5.741	6.371	3.962	5.515	7.965	5.448	5.929	6.723	6.894	0.716	0.829	1.006	0.756	0.840	1.155	7.211
4614	chr14	41823929	41828502	+	0	NA	Intergenic	Intergenic	-53811	NM_001244671	100042055	Mm.429109	NM_001244671	ENSMUSG00000095226	Gm10377	ENSMUSG00000072606	predicted gene 10377	protein-coding	2.206	1.814	1.182	2.420	1.173	0.734	5.706	5.680	2.370	2.272	1.435	2.857	4.302	4.111	5.113	5.672	2.228	3.595	1.155	0.789	0.777	1.649	1.111	1.358	5.443
5519	chr15	85039649	85042456	+	0	NA	intron (NM_133750, intron 1 of 8)	intron (NM_133750, intron 1 of 8)	3990	NM_133750	73225	Mm.247535	NM_133750	ENSMUSG00000022434	Fam118a	-	family with sequence similarity 118, member A	protein-coding	nan	0.423	0.432	nan	0.313	0.207	nan	nan	nan	0.258	7.207	1.800	0.169	0.337	nan	nan	nan	nan	nan	0.466	0.439	nan	0.589	0.520	nan
1404	chr10	69057168	69059519	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-150209	NM_001252636	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	6.347	0.481	0.326	2.506	4.581	2.976	5.036	1.651	3.789	4.863	0.629	0.859	5.953	6.598	4.732	5.837	6.437	5.111	2.118	1.382	0.886	2.480	2.167	1.435	5.944
10860	chr4	144718982	144720658	+	0	NA	intron (NM_001085536, intron 1 of 3)	intron (NM_001085536, intron 1 of 3)	1584	NM_001085536	546849	Mm.457885	NM_001085536	ENSMUSG00000041735	Gm13178	Gm437|OTTMUSG00000010750	predicted gene 13178	protein-coding	4.780	nan	1.385	2.545	2.125	1.708	3.615	1.925	1.751	2.845	1.188	1.286	3.220	4.280	4.292	2.564	1.812	3.030	1.170	1.117	1.239	0.879	1.177	0.546	3.645
9225	chr3	33031439	33044812	+	0	NA	intron (NR_040595, intron 2 of 7)	Lx8|LINE|L1	13348	NR_040595	73874	Mm.444676	NR_040595	ENSMUSG00000087625	4930419G24Rik	-	RIKEN cDNA 4930419G24 gene	ncRNA	0.290	0.414	0.254	0.284	0.165	0.073	0.313	0.202	nan	0.365	0.161	0.112	0.147	0.204	0.192	0.484	0.263	0.355	nan	2.709	1.618	nan	2.476	1.661	0.358
1543	chr10	83096677	83112157	+	0	NA	intron (NM_021439, intron 2 of 2)	intron (NM_021439, intron 2 of 2)	118920	NM_021439	58250	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	5.809	1.916	1.015	3.948	3.590	1.973	3.253	6.338	4.652	5.260	4.738	4.088	4.684	nan	4.697	5.013	4.023	nan	7.309	3.600	3.002	nan	nan	3.708	5.766
12576	chr6	112444949	112446172	+	0	NA	Intergenic	RMER12|LTR|ERVK	-13945	NM_007617	12391	Mm.3924	NM_007617	ENSMUSG00000062694	Cav3	AI385751|Cav-3|M-cav	caveolin 3	protein-coding	4.458	0.393	0.391	1.409	0.440	0.103	1.898	3.939	1.483	1.185	0.416	0.832	4.920	3.649	1.580	2.010	2.948	2.060	nan	0.421	0.401	1.038	0.374	0.511	2.946
9501	chr3	93309380	93313469	+	0	NA	Intergenic	RMER19B2|LTR|ERVK	-8325	NM_133698	68723	Mm.208047	NM_133698	ENSMUSG00000041991	Hrnr	1110033K19Rik|A530063N20Rik|S100a18	hornerin	protein-coding	4.667	2.157	0.943	2.927	2.858	1.874	5.665	4.082	3.670	3.213	7.047	3.985	6.056	4.815	4.080	4.160	5.150	4.826	0.595	1.086	0.520	0.626	0.454	0.316	3.859
8366	chr2	73398442	73400737	+	0	NA	Intergenic	Intergenic	-13109	NM_001276444	68526	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	7.587	1.301	0.892	2.691	1.303	0.868	1.429	1.719	1.351	2.427	0.370	0.382	3.867	4.254	nan	3.874	3.247	2.349	0.605	0.826	0.639	1.129	1.043	0.817	4.828
424	chr1	90985402	90993235	+	0	NA	Intergenic	MMERVK10C-int|LTR|ERVK	-9409	NM_001111312	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	5.974	0.909	0.331	3.280	2.182	0.879	4.381	4.274	2.604	2.616	2.214	1.558	4.675	3.761	4.095	7.448	3.927	5.516	2.208	1.374	0.881	nan	1.559	0.755	6.079
6786	chr17	66004589	66008700	+	0	NA	intron (NM_001025572, intron 8 of 12)	intron (NM_001025572, intron 8 of 12)	-55457	NM_023053	65960	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	5.119	0.890	0.325	6.104	5.615	2.258	6.206	4.553	4.401	6.549	1.874	1.476	5.581	9.403	7.210	7.636	3.303	10.188	1.815	0.930	0.569	2.046	1.983	1.360	6.936
7500	chr19	5938355	5947034	+	0	NA	intron (NM_001164057, intron 15 of 17)	intron (NM_001164057, intron 15 of 17)	-17878	NM_026772	104252	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	4.507	2.085	0.654	3.608	1.359	0.632	4.933	6.811	nan	1.854	0.862	1.134	3.322	3.482	3.964	nan	3.062	3.627	1.146	0.693	0.648	3.915	0.392	0.366	3.891
1402	chr10	69033644	69035711	+	0	NA	Intergenic	Intergenic	-173875	NM_001252636	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	6.285	2.644	1.921	2.615	6.358	3.804	7.809	4.767	3.266	4.011	2.869	3.277	5.214	8.279	5.972	5.123	7.762	3.691	7.332	4.807	2.698	5.567	7.005	7.165	4.884
6333	chr17	12492268	12493821	+	0	NA	intron (NM_011395, intron 1 of 10)	L1Md_F2|LINE|L1	14660	NM_011395	20519	Mm.99252	NM_011395	ENSMUSG00000023828	Slc22a3	EMT|Oct3|Orct3|Slca22a3	solute carrier family 22 (organic cation transporter), member 3	protein-coding	3.128	1.170	0.184	2.748	2.563	0.581	3.135	5.406	2.699	2.868	1.207	1.510	2.931	4.031	5.306	5.097	2.493	4.675	nan	0.770	0.228	2.294	1.075	0.707	4.464
11399	chr5	89193439	89198765	+	0	NA	intron (NM_001197147, intron 16 of 25)	intron (NM_001197147, intron 16 of 25)	261796	NM_008096	14473	Mm.196595	NM_008096	ENSMUSG00000035540	Gc	DBP|VDB	group specific component	protein-coding	2.781	9.670	6.295	2.337	1.554	0.959	2.316	2.515	2.149	2.335	1.715	1.251	1.588	2.379	2.672	3.044	2.306	2.467	2.674	2.075	2.026	2.655	2.989	2.433	2.506
14896	chr9	21228582	21234074	+	0	NA	exon (NM_016679, exon 4 of 5)	exon (NM_016679, exon 4 of 5)	-5047	NR_106127	102465769		NR_106127	ENSMUSG00000098764	Mir7667	Gm27756|mmu-mir-7667	microRNA 7667	ncRNA	6.104	4.710	1.553	5.462	3.629	2.587	3.799	6.441	4.028	6.065	3.535	3.236	3.752	5.561	4.919	5.877	3.033	5.564	4.204	2.445	3.171	4.474	3.437	3.529	7.615
12989	chr7	20379313	20384165	+	0	NA	Intergenic	L1_Mus3|LINE|L1	-6329	NM_001166751	667485	Mm.482056	NM_001166751	ENSMUSG00000093917	Gm8660	EG667485|Vmn1r147	predicted gene 8660	protein-coding	4.861	1.371	0.891	3.872	5.695	4.626	7.105	9.382	4.143	5.801	5.509	4.105	7.288	7.040	5.463	5.315	5.762	5.804	1.084	1.231	1.629	1.302	1.839	1.596	7.582
2402	chr11	70389664	70394491	+	0	NA	TTS (NM_029231)	TTS (NM_029231)	17954	NM_029231	75273	Mm.340601	NM_029231	ENSMUSG00000018921	Pelp1	4930563C04Rik|MNAR	proline, glutamic acid and leucine rich protein 1	protein-coding	4.311	4.459	2.257	3.543	4.528	2.488	3.139	6.438	3.652	4.532	9.555	5.323	3.533	6.261	3.673	3.307	1.942	3.730	1.249	1.428	0.989	1.020	nan	0.699	2.903
10453	chr4	119730934	119733828	+	0	NA	Intergenic	Intergenic	-73436	NM_008191	14916	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	1.068	1.275	1.034	0.962	0.549	0.156	0.493	0.596	0.861	0.529	0.369	1.214	0.140	0.351	0.670	nan	0.528	0.931	3.844	5.290	2.333	8.330	3.500	2.261	0.941
1841	chr10	126723810	126730565	+	0	NA	Intergenic	RLTR12D|LTR|ERVK	-16796	NR_105841	102465224		NR_105841	ENSMUSG00000098756	Mir378d	Gm27650|mmu-mir-378d	microRNA 378d	ncRNA	9.873	10.187	4.124	7.862	6.305	3.712	6.670	7.562	4.952	7.837	6.732	2.876	6.240	9.676	7.624	9.070	6.408	7.238	4.878	3.737	3.287	5.378	nan	3.492	11.669
7771	chr19	41567415	41571156	+	0	NA	Intergenic	Intergenic	-19366	NR_106166	102465884		NR_106166	ENSMUSG00000098286	Mir8091	Gm27575|mmu-mir-8091	microRNA 8091	ncRNA	nan	1.626	1.634	1.276	4.409	3.303	4.700	5.276	2.271	2.088	2.753	2.692	2.006	3.154	2.310	2.125	nan	2.931	0.959	1.112	1.041	1.282	1.723	1.544	1.465
347	chr1	79577337	79578566	+	0	NA	Intergenic	Intergenic	94021	NM_183027	252903	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	6.278	2.267	0.844	1.845	1.961	0.817	5.176	6.143	4.772	3.869	3.892	3.615	5.301	4.343	5.814	8.599	3.021	5.013	nan	nan	0.306	1.838	nan	0.484	4.136
12553	chr6	103312139	103313541	+	0	NA	Intergenic	Intergenic	-198036	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	1.844	0.895	0.458	1.333	1.262	0.618	4.383	4.329	1.228	1.406	0.844	0.331	2.393	3.185	2.648	1.421	4.588	1.913	nan	0.667	0.368	0.418	0.281	0.510	nan
434	chr1	92122736	92124709	+	0	NA	intron (NM_207225, intron 2 of 26)	intron (NM_207225, intron 2 of 26)	56619	NM_207225	208727	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	4.437	0.501	0.375	1.242	3.304	2.951	4.015	4.678	2.546	2.636	6.042	3.097	3.463	3.350	2.288	3.206	1.366	2.750	0.668	0.760	0.636	nan	0.628	0.579	2.418
11377	chr5	77783782	77801370	+	0	NA	Intergenic	Intergenic	327088	NR_131050	69370	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	5.763	2.114	0.994	3.759	2.730	1.403	5.468	4.902	3.210	3.669	2.441	1.177	5.010	5.908	4.712	nan	4.025	nan	1.213	0.922	0.901	1.118	1.010	0.736	4.243
10260	chr4	89014251	89015604	+	0	NA	Intergenic	L1Md_T|LINE|L1	-35380	NR_033533	100040617	Mm.171720	NR_033533	ENSMUSG00000085183	Gm12603	OTTMUSG00000007693	predicted gene 12603	ncRNA	3.420	nan	0.615	1.608	3.073	2.743	3.191	2.396	2.303	1.649	2.959	2.688	1.401	4.702	1.838	1.671	1.091	3.089	1.989	nan	1.206	1.596	1.481	1.633	1.661
865	chr1	172574105	172577121	+	0	NA	Intergenic	RMER13B|LTR|ERVK	14955	NM_029084	74748	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	6.199	1.317	0.876	nan	1.207	0.725	1.764	1.810	nan	2.197	0.653	1.932	nan	1.735	nan	3.640	2.349	3.057	1.602	1.085	0.444	nan	nan	1.274	nan
5982	chr16	30601500	30603804	+	0	NA	3' UTR (NM_177632, exon 1 of 1)	3' UTR (NM_177632, exon 1 of 1)	2929	NM_177632	224093	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	4.267	2.430	0.685	5.102	1.388	1.213	2.450	2.496	3.207	3.681	1.092	2.375	4.158	2.749	2.203	3.018	1.722	3.286	4.232	2.456	2.138	1.779	4.655	4.276	3.377
6651	chr17	45720649	45722618	+	0	NA	Intergenic	B4A|SINE|B4	12211	NM_028164	72240	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	6.025	3.361	2.022	6.954	2.747	1.962	2.526	2.152	3.388	3.532	2.485	1.959	2.083	3.386	3.663	4.506	3.046	4.424	1.758	3.252	2.482	4.962	1.186	0.556	6.029
3165	chr12	7882622	7885161	+	0	NA	Intergenic	Intergenic	-93786	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	9.745	0.636	0.393	3.564	4.075	2.876	6.130	5.164	5.426	7.674	0.633	0.677	12.760	10.553	5.982	9.180	8.782	7.102	0.565	0.739	0.160	0.608	0.581	0.518	5.511
5557	chr15	88678036	88699238	+	0	NA	intron (NM_001033274, intron 12 of 12)	intron (NM_001033274, intron 12 of 12)	45582	NM_001033274	223770	Mm.254438	NM_001033274	ENSMUSG00000022387	Brd1	1110059H06Rik|AI316859|mKIAA4191	bromodomain containing 1	protein-coding	nan	3.282	0.879	nan	3.535	2.287	nan	11.619	nan	6.593	3.228	2.261	5.639	8.421	nan	nan	nan	nan	nan	2.728	2.751	nan	3.201	2.848	nan
8127	chr2	32114248	32116250	+	0	NA	Intergenic	B2_Mm2|SINE|B2	19598	NM_145521	227721	Mm.257236	NM_145521	ENSMUSG00000051373	Plpp7	D830019K17Rik|NET39|Ppapdc3	phospholipid phosphatase 7 (inactive)	protein-coding	5.956	8.630	2.753	7.075	2.654	1.619	7.773	9.073	3.030	5.838	2.791	2.961	7.597	8.533	8.192	10.428	5.919	7.481	3.921	1.305	1.997	5.660	2.016	2.436	13.354
4216	chr13	63234917	63243301	+	0	NA	promoter-TSS (NR_110521)	promoter-TSS (NR_110521)	-920	NR_110520	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	2.397	1.182	0.666	2.440	2.149	1.061	1.194	2.325	2.501	2.614	1.990	1.478	1.736	2.573	2.563	nan	1.265	3.312	5.396	2.135	1.660	5.195	3.540	2.522	1.971
15777	chrX	96534057	96536128	+	0	NA	intron (NM_001159628, intron 16 of 21)	L1Md_T|LINE|L1	78746	NM_001159627	15203	Mm.277092	NM_010417	ENSMUSG00000031209	Heph	C130006F04Rik|Cpl|mKIAA0698|sla	hephaestin	protein-coding	2.918	1.560	1.143	1.756	2.339	1.770	2.888	2.195	1.301	1.972	0.600	0.590	2.211	5.369	2.275	4.136	2.149	2.959	0.752	0.766	0.503	0.369	0.742	0.887	3.144
15097	chr9	56310408	56314988	+	0	NA	intron (NM_172924, intron 3 of 6)	B3|SINE|B2	105352	NM_172924	244895	Mm.490331	NM_172924	ENSMUSG00000074305	Peak1	1110049L02Rik|9530046P14|AA690169|BE132841|C230081A13Rik|SGK269|mKIAA2002	pseudopodium-enriched atypical kinase 1	protein-coding	6.334	3.635	1.967	5.765	3.789	2.152	5.316	nan	4.772	4.691	3.458	2.444	4.891	6.714	5.768	6.674	4.054	5.809	1.892	1.720	1.372	1.843	1.446	1.171	6.865
13457	chr7	104896408	104898235	+	0	NA	Intergenic	RMER1B|Other|Other	-3695	NM_147096	259100	Mm.377842	NM_147096	ENSMUSG00000063582	Olfr666	MOR34-1	olfactory receptor 666	protein-coding	10.995	8.265	4.883	7.967	5.528	4.436	8.090	8.824	6.432	7.930	7.863	4.144	7.261	10.250	7.866	7.607	8.362	5.310	nan	3.671	4.437	3.712	4.341	5.927	9.162
4134	chr13	52226325	52232378	+	0	NA	Intergenic	L1M4|LINE|L1	132610	NR_045061	74050	Mm.84860	NR_045061		4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	nan	0.948	0.636	nan	0.325	0.182	0.504	0.592	0.538	0.446	0.440	0.180	0.274	0.409	0.499	0.638	0.413	nan	4.066	nan	2.136	6.190	4.431	3.640	nan
11532	chr5	106206505	106209082	+	0	NA	Intergenic	L2|LINE|L2	-113547	NR_136913	102635633	Mm.383511	NR_136913	ENSMUSG00000105508	Gm32921	-	predicted gene, 32921	ncRNA	3.059	1.319	0.738	2.636	1.938	0.846	4.681	3.438	2.415	2.168	2.702	2.373	3.546	4.268	4.182	3.136	2.068	2.805	nan	1.202	0.495	1.363	0.951	0.580	2.188
11107	chr5	31189137	31192325	+	0	NA	intron (NM_010122, intron 7 of 12)	intron (NM_010122, intron 7 of 12)	2408	NM_001127355	13667	Mm.29394	NM_010122	ENSMUSG00000029145	Eif2b4	Eif2b	eukaryotic translation initiation factor 2B, subunit 4 delta	protein-coding	7.331	10.821	2.995	9.104	3.528	1.753	7.240	8.059	5.372	7.926	4.808	3.838	6.781	8.994	9.635	10.807	6.353	7.944	5.291	2.992	2.194	7.136	4.361	4.454	9.758
14468	chr8	94237018	94238305	+	0	NA	intron (NM_172410, intron 3 of 22)	ID|SINE|ID	23060	NM_172410	71805	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	1.287	0.550	0.261	0.818	0.778		0.569	1.037	0.914	1.587	0.708	0.647	0.436	0.871	0.543	2.225	3.378	0.857	4.226	5.128	3.652	4.739	3.927	2.999	2.127
4654	chr14	48750287	48751893	+	0	NA	intron (NR_029384, intron 4 of 4)	intron (NR_029384, intron 4 of 4)	81802	NR_029384	606497	Mm.165199	NR_029384	ENSMUSG00000098682	Otx2os1	-	orthodenticle homeobox 2 opposite strand 1	ncRNA	5.416	1.787	0.306	4.231	1.679	0.854	1.587	1.405	2.897	3.595	4.494	1.354	1.203	2.994	2.551	2.869	1.170	2.533	0.523	0.764	0.381	0.703	0.368	0.418	4.251
5920	chr16	23312242	23327663	+	0	NA	intron (NM_001252505, intron 3 of 7)	intron (NM_001252505, intron 3 of 7)	29482	NM_001252506	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	3.850	4.234	2.835	2.554	3.414	2.176	5.850	5.602	3.094	4.184	2.047	1.282	7.158	6.174	4.558	6.297	4.846	3.822	1.127	1.015	0.900	0.972	nan	1.567	4.030
7298	chr18	61713712	61718256	+	0	NA	exon (NM_021296, exon 4 of 4)	exon (NM_021296, exon 4 of 4)	-8349	NM_172832	240334	Mm.234457	NM_172832	ENSMUSG00000024579	Pcyox1l	BC060677|C630049M13	prenylcysteine oxidase 1 like	protein-coding	11.406	9.749	3.470	8.523	4.899	3.030	8.488	10.686	6.496	9.545	8.203	4.400	nan	9.694	9.067	9.523	7.112	10.374	nan	3.791	2.047	6.961	3.704	2.883	13.203
14813	chr8	129230332	129232483	+	0	NA	intron (NM_153780, intron 1 of 4)	intron (NM_153780, intron 1 of 4)	2639	NM_153780	72139	Mm.426514	NM_153780	ENSMUSG00000071302	2610044O15Rik8	2610044O15Rik	RIKEN cDNA 2610044O15 gene	protein-coding	4.873	1.559	0.963	3.478	3.904	2.586	nan	4.405	4.633	4.246	3.081	2.577	2.787	4.533	nan	5.634	3.253	3.881	nan	1.965	1.715	nan	2.547	nan	5.008
3929	chr13	31669371	31671834	+	0	NA	Intergenic	RLTR20C1_MM|LTR|ERVK	44786	NM_010225	14238	Mm.125548	NM_010225	ENSMUSG00000038402	Foxf2	FREAC2|Fkh20|LUN	forkhead box F2	protein-coding	5.189	0.456	0.337	2.200	2.306	1.444	6.893	9.147	4.804	4.852	7.088	4.567	6.596	7.810	5.849	7.631	5.251	5.324	0.578	0.835	0.539	0.753	0.345	0.167	6.668
3129	chr11	120945555	120948428	+	0	NA	Intergenic	Intergenic	-1493	NM_030696	80879	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	3.440	nan	0.731	1.082	1.642	0.808	nan	nan	1.385	nan	1.961	1.106	5.851	5.464	3.813	2.665	2.354	nan	1.281	nan	0.316	0.767	0.564	0.523	3.411
689	chr1	137752539	137755107	+	0	NA	Intergenic	MTE2b|LTR|ERVL-MaLR	-212632	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	1.817	0.599	0.315	nan	0.699	0.384	2.042	2.066	2.917	2.488	7.975	4.210	3.148	nan	1.708	nan	0.799	1.991	0.854	0.581	0.373	0.536	0.451	0.406	nan
15418	chr9	99600644	99611877	+	0	NA	Intergenic	Intergenic	-6242	NM_001077424	333424	Mm.297753	NM_001077424	ENSMUSG00000037953	A4gnt	AV080780|Alpha4gnt|Gm798	alpha-1,4-N-acetylglucosaminyltransferase	protein-coding	8.927	0.417	0.320	4.980	3.601	1.544	7.751	5.950	8.878	10.358	1.183	2.820	9.088	13.182	8.819	10.346	6.501	12.240	0.489	0.728	0.186	0.319	0.439	0.304	13.127
9806	chr3	132462894	132464771	+	0	NA	Intergenic	Intergenic	-166359	NM_001270430	433653		NM_001270430	ENSMUSG00000091721	Gimd1	EG433653|Gm5549	GIMAP family P-loop NTPase domain containing 1	protein-coding	4.288	0.553	0.500	3.003	3.836	2.536	4.034	2.003	2.789	3.463	1.165	0.750	4.057	5.011	1.896	3.190	4.461	nan	0.815	0.291	0.347	0.497	0.538	0.467	2.235
3462	chr12	77912317	77929629	+	0	NA	Intergenic	Intergenic	-305682	NM_172952	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	7.031	0.651	0.500	3.868	4.920	2.951	7.056	5.425	4.279	6.416	4.016	2.736	8.572	8.363	7.657	7.911	6.402	7.340	1.537	0.887	0.956	1.255	1.242	1.051	10.050
5994	chr16	31505935	31510344	+	0	NA	Intergenic	Intergenic	79386	NM_001122683	71911	Mm.293470	NM_175177	ENSMUSG00000046598	Bdh1	2310032J20Rik|AI327223|Bdh	3-hydroxybutyrate dehydrogenase, type 1	protein-coding	4.418	0.857	0.532	2.515	3.323	1.944	4.606	8.018	2.445	2.809	4.584	2.848	4.643	4.569	4.408	nan	5.202	5.114	1.184	0.953	0.750	1.104	nan	1.620	4.329
11664	chr5	122282439	122289948	+	0	NA	intron (NM_177242, intron 1 of 5)	intron (NM_177242, intron 1 of 5)	1795	NM_177242	320717	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	7.788	13.404	3.966	10.423	3.495	2.402	6.566	5.846	4.762	7.936	6.768	3.200	5.162	7.495	6.947	8.829	4.498	7.006	nan	nan	2.171	4.169	nan	2.428	10.974
1116	chr10	17913698	17916167	+	0	NA	intron (NM_001033432, intron 2 of 3)	intron (NM_001033432, intron 2 of 3)	33135	NM_001033432	380629	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	3.677	0.820	0.564	0.883	0.894	0.478	0.939	2.268	nan	1.311	5.150	1.717	1.126	4.300	1.857	1.945	2.700	1.444	0.605	0.750	0.517	0.403	0.535	0.732	nan
10501	chr4	123570233	123572296	+	0	NA	intron (NM_001199136, intron 1 of 97)	intron (NM_001199136, intron 1 of 97)	-45156	NR_105824	102465214		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	1.801	0.681	0.189	3.783	1.988	0.745	3.442	1.353	3.839	3.834	0.268	0.339	3.259	4.604	nan	5.560	2.689	4.677	0.685	0.797	0.275	0.561	0.534	0.176	4.764
10310	chr4	100062518	100063919	+	0	NA	Intergenic	(TCTA)n|Simple_repeat|Simple_repeat	-32573	NM_013845	26563	Mm.57252	NM_013845	ENSMUSG00000035305	Ror1	2810404D04Rik|Ntrkr1	receptor tyrosine kinase-like orphan receptor 1	protein-coding	4.484	nan	0.453	1.928	4.535	1.967	4.376	3.275	nan	3.362	0.724	0.292	4.087	4.514	3.564	5.592	2.503	4.841	1.069	1.432	1.293	1.217	0.621	0.518	6.726
4413	chr13	112084927	112086189	+	0	NA	Intergenic	Intergenic	-202893	NM_001168403	77318	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	4.171	nan	0.877	0.724	1.703	1.040	5.953	3.039	3.243	2.795	1.105	1.482	3.453	3.653	2.875	3.238	3.647	3.450	1.080	1.185	0.739	nan	1.165	0.904	2.269
5231	chr15	59559549	59561231	+	0	NA	intron (NM_026746, intron 4 of 6)	intron (NM_026746, intron 4 of 6)	-88264	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	5.674	4.898	1.786	4.964	3.430	1.812	6.431	8.652	3.945	3.123	2.139	1.452	5.434	5.831	7.072	6.300	4.351	5.608	1.010	1.164	0.458	1.472	0.979	0.430	4.602
14042	chr8	13490345	13492490	+	0	NA	intron (NM_019521, intron 2 of 14)	intron (NM_019521, intron 2 of 14)	3118	NM_019521	14456	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	3.150	1.041	0.342	4.695	1.841	0.734	2.302	5.267	2.771	3.113	1.566	1.744	5.353	6.352	5.400	6.547	3.178	5.949	2.680	1.524	1.430	4.667	1.122	0.887	7.078
12434	chr6	89808526	89811796	+	0	NA	Intergenic	Intergenic	35454	NM_053221	113848	Mm.349358	NM_053221	ENSMUSG00000068232	Vmn1r42	V1ra1|V1ra3|V1ra6	vomeronasal 1 receptor 42	protein-coding	6.744	0.520	0.264	nan	3.891	1.589	2.715	2.880	1.652	2.054	2.571	0.909	4.267	5.110	2.885	1.808	4.358	3.115	nan	0.266	0.187	0.339	0.169	0.029	2.433
12448	chr6	90845844	90847337	+	0	NA	Intergenic	RSINE1|SINE|B4	-36467	NM_001134384	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.941	0.674	0.722	nan	0.550	0.413	1.277	1.414	0.645	0.779	0.223	0.271	0.211	0.671	0.781	0.768	1.340	nan	nan	1.860	1.584	1.214	5.124	4.897	0.857
1725	chr10	111107989	111111956	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-54830	NM_001003717	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	6.280	1.032	0.440	4.332	6.063	2.813	6.653	4.245	nan	7.041	6.537	4.751	5.942	8.034	6.919	6.828	4.872	7.805	1.574	1.331	0.747	2.016	1.032	0.642	7.074
4965	chr14	120739860	120741684	+	0	NA	Intergenic	Intergenic	-170422	NM_023579	70572	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5	importin 5	protein-coding	2.254	0.454	0.452	3.290	1.393	0.530	1.191	2.964	2.554	1.178	2.742	2.253	2.213	2.698	2.842	2.423	0.966	3.322	1.019	0.518	0.269	1.103	0.645	0.262	2.774
6978	chr18	3892764	3894227	+	0	NA	Intergenic	Intergenic	-272337	NM_026092	67328	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	5.605	0.748	0.573	3.590	0.871	0.334	3.625	7.922	3.864	4.131	2.900	0.769	5.896	5.130	5.400	5.120	3.225	6.352	4.129	0.467	0.084	2.397	1.722	1.144	4.592
2379	chr11	69649685	69653148	+	0	NA	exon (NM_011814, exon 13 of 17)	exon (NM_011814, exon 13 of 17)	-3621	NM_009235	20670	Mm.347499	NM_009235	ENSMUSG00000041287	Sox15	-	SRY (sex determining region Y)-box 15	protein-coding	6.275	4.515	1.935	6.120	4.101	1.925	4.802	6.520	3.332	5.730	2.960	1.628	4.109	nan	5.999	7.529	5.751	5.075	3.589	4.783	3.314	5.205	nan	4.194	7.922
727	chr1	151766969	151770375	+	0	NA	intron (NM_001311165, intron 2 of 20)	intron (NM_001311165, intron 2 of 20)	13298	NM_001311166	66967	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	8.012	0.577	0.405	0.846	0.631	0.613	3.102	2.358	2.104	1.170	1.229	3.040	5.750	1.480	1.830	5.490	4.672	3.037	0.583	0.650	0.624	0.315	0.486	0.393	1.634
9147	chr3	14646632	14648714	+	0	NA	intron (NM_024495, intron 2 of 6)	intron (NM_024495, intron 2 of 6)	5946	NM_024495	71934	Mm.158776	NM_024495	ENSMUSG00000027555	Car13	2310075C21Rik|Ca13	carbonic anhydrase 13	protein-coding	2.460	nan	1.073	1.399	0.889	0.639	2.865	2.807	3.903	2.467	5.152	6.317	3.596	2.998	3.364	3.169	2.367	2.589	0.626	0.622	0.438	0.267	0.391	0.350	2.567
5827	chr16	16222943	16225524	+	0	NA	intron (NM_026163, intron 1 of 12)	intron (NM_026163, intron 1 of 12)	10888	NM_026163	67451	Mm.2252	NM_026163	ENSMUSG00000041957	Pkp2	1200008D14Rik|1200012P04Rik|AA516617|Pkp2l	plakophilin 2	protein-coding	6.078	0.656	0.328	4.500	5.266	2.589	4.781	7.853	5.424	4.088	3.645	1.962	7.090	7.975	5.556	8.284	4.331	9.491	0.892	0.748	0.561	0.600	0.699	0.549	6.207
15373	chr9	88410446	88412348	+	0	NA	intron (NM_172926, intron 6 of 27)	L1MB7|LINE|L1	27554	NM_172926	244962	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	1.966	6.572	6.534	1.091	1.051	1.053	0.956	1.068	1.400	1.918	0.747	1.108	0.878	2.099	0.870	1.169	1.114	1.028	2.012	2.234	1.713	1.045	3.261	2.965	1.403
11924	chr5	144381778	144389521	+	0	NA	Intergenic	Intergenic	27124	NR_102373	100579137		NR_102372	ENSMUSG00000104600	Dmrt1i	Dmr	Dmrt1 interacting ncRNA	ncRNA	6.937	2.357	0.966	7.734	3.660	2.337	3.404	3.773	nan	7.112	4.583	3.406	3.800	6.563	3.871	4.870	4.738	7.064	1.669	1.559	1.340	2.190	0.926	0.935	nan
10483	chr4	122681622	122684406	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-6245	NM_023865	77432	Mm.491436	NM_023865	ENSMUSG00000023263	9530002B09Rik	Aump|Vpp1|Vppl	RIKEN cDNA 9530002B09 gene	protein-coding	1.409	0.759	0.486	1.066	0.892	0.300	1.333	1.035	2.037	1.482	1.153	0.726	1.320	1.394	1.397	nan	0.827	1.674	3.047	9.940	7.940	5.801	2.849	2.619	1.346
8196	chr2	35711985	35714179	+	0	NA	intron (NM_001001602, intron 5 of 13)	intron (NM_001001602, intron 5 of 13)	16350	NM_001290639	69601	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	2.968	0.591	0.324	1.390	2.170	1.844	2.772	2.193	3.316	4.124	0.763	1.014	2.739	4.408	2.755	2.966	1.927	2.696	1.594	0.861	0.701	0.897	0.952	0.286	2.880
4600	chr14	35158978	35177665	+	0	NA	intron (NM_008166, intron 4 of 15)	intron (NM_008166, intron 4 of 15)	273712	NR_029774	723847		NR_029774	ENSMUSG00000065481	Mir346	Mirn346|mir-346|mmu-mir-346	microRNA 346	ncRNA	3.378	0.819	0.427	2.720	2.652	1.675	5.227	5.520	3.707	3.991	1.451	1.605	6.300	7.441	5.907	8.147	5.261	4.788	2.798	2.337	1.825	2.711	1.587	1.248	7.323
12307	chr6	71677610	71678902	+	0	NA	Intergenic	Intergenic	-29425	NM_178608	52250	Mm.146332	NM_178608	ENSMUSG00000052852	Reep1	D6Ertd253e	receptor accessory protein 1	protein-coding	1.681	0.369	0.315	1.029	0.791	0.535	2.067	2.294	1.024	1.502	0.384	0.448	1.514	3.188	2.741	2.831	2.081	1.976	1.242	0.480	0.217	1.817	0.204	0.197	1.208
2619	chr11	88575213	88580487	+	0	NA	intron (NM_054043, intron 6 of 13)	intron (NM_054043, intron 6 of 13)	-41401	NR_131025	68397	Mm.426889	NR_131025		0610039H22Rik	-	RIKEN cDNA 0610039H22 gene	ncRNA	nan	7.470	3.350	nan	2.920	2.125	3.358	4.234	2.103	5.427	2.304	2.526	2.090	3.965	3.812	4.303	3.097	3.619	6.692	4.206	3.379	nan	6.212	5.680	nan
15503	chr9	108418952	108420451	+	0	NA	intron (NM_001135198, intron 2 of 6)	intron (NM_001135198, intron 2 of 6)	8781	NM_001135198	434438	Mm.425598	NM_001135198	ENSMUSG00000047220	Ccdc36	-	coiled-coil domain containing 36	protein-coding	10.553	18.790	6.815	17.363	5.208	5.488	9.338	9.864	7.787	19.537	9.804	6.935	10.725	12.154	11.629	14.568	6.236	12.824	6.083	2.523	5.219	8.732	3.883	7.490	25.528
10208	chr4	82017782	82019785	+	0	NA	Intergenic	L1Md_A|LINE|L1	-46597	NR_040659	545641	Mm.216028	NR_040659	ENSMUSG00000085022	Gm5860	EG545641	predicted gene 5860	ncRNA	1.391	0.722	0.654	1.904	1.672	1.712	1.346	1.066	1.531	0.965	1.219	1.287	0.613	0.695	0.744	1.197	1.072	1.081	2.172	3.978	6.474	4.940	1.839	2.181	0.788
10092	chr4	53808868	53811779	+	0	NA	Intergenic	Intergenic	-15722	NM_028053	52076	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	1.249	10.987	7.199	1.041	1.245	0.932	nan	1.062	1.266	0.911	0.617	0.497	0.773	1.084	1.199	1.056	0.738	1.540	nan	0.628	0.618	0.509	0.486	0.548	1.091
4858	chr14	76261970	76268906	+	0	NA	Intergenic	Intergenic	-149523	NM_001310646	21807	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	3.437	0.832	0.582	2.926	3.971	3.917	5.997	7.351	4.091	4.125	3.655	3.507	4.948	6.011	5.182	5.246	4.232	3.100	1.496	0.969	1.154	0.910	1.032	1.050	4.258
2834	chr11	102463366	102468818	+	0	NA	intron (NM_010575, intron 7 of 29)	intron (NM_010575, intron 7 of 29)	3791	NM_010575	16399	Mm.26646	NM_010575	ENSMUSG00000034664	Itga2b	AI172977|CD41|CD41B|GpIIb|alphaIIb	integrin alpha 2b	protein-coding	4.158	nan	0.683	2.525	1.676	1.293	5.088	1.997	1.902	3.950	1.823	1.288	3.060	5.200	5.226	6.166	5.624	2.651	0.484	nan	0.725	0.530	nan	nan	7.964
14987	chr9	42279163	42280891	+	0	NA	Intergenic	Intergenic	-15727	NM_172769	235293	Mm.32700	NM_172769	ENSMUSG00000032018	Sc5d	A830037K02|A830073K23Rik|Sc5dl	sterol-C5-desaturase	protein-coding	5.145	5.420	1.518	6.771	2.156	1.162	3.534	6.499	4.140	7.520	2.278	2.719	4.477	6.125	6.490	7.400	3.589	7.533	3.059	2.485	2.196	5.665	2.462	2.837	9.935
12170	chr6	38499526	38502659	+	0	NA	intron (NM_177185, intron 16 of 16)	intron (NM_177185, intron 16 of 16)	-6233	NR_106130	102466843		NR_106130	ENSMUSG00000098285	Mir7670	Gm27707|mmu-mir-7670	microRNA 7670	ncRNA	10.878	13.536	6.515	12.253	9.064	6.937	12.810	11.122	6.838	11.057	8.148	5.230	10.603	13.369	11.218	13.189	11.410	9.196	6.723	4.366	5.051	6.509	6.072	6.081	12.881
6720	chr17	49567205	49571562	+	0	NA	Intergenic	B4A|SINE|B4	-5046	NM_001008231	76441	Mm.211275	NM_001008231	ENSMUSG00000040260	Daam2	2310016D11Rik|AI843643|AW557870	dishevelled associated activator of morphogenesis 2	protein-coding	9.769	3.777	1.332	7.663	2.998	2.220	11.589	9.468	7.427	8.061	4.727	2.350	8.458	10.901	10.810	13.449	8.574	9.508	1.594	1.300	1.091	1.806	1.246	1.057	13.192
14980	chr9	41904232	41912152	+	0	NA	Intergenic	MuLV-int|LTR|ERV1	216097	NM_011436	20660	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	4.786	4.061	1.362	5.111	2.102	0.960	5.335	5.903	4.457	5.376	3.525	2.237	6.822	8.083	7.101	8.223	3.464	6.510	nan	1.260	0.920	2.666	1.596	0.764	7.975
10696	chr4	134857591	134860767	+	0	NA	Intergenic	Intergenic	-5357	NM_011270	19746	Mm.195461	NM_011270	ENSMUSG00000028825	Rhd	Rh|Rhced|Rhl1	Rh blood group, D antigen	protein-coding	1.475	1.325	0.840	2.811	4.343	3.803	2.185	1.198	nan	2.279	1.751	1.538	0.863	2.315	1.566	1.460	0.767	nan	3.248	3.233	4.813	3.400	nan	4.176	1.782
13444	chr7	99158566	99159779	+	0	NA	intron (NM_026384, intron 4 of 7)	intron (NM_026384, intron 4 of 7)	-18028	NM_178635	78610	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	2.520	0.447	0.497	0.685	2.332	0.969	3.602	3.987	1.887	2.737	0.558	0.112	2.644	3.965	2.919	nan	1.479	4.191	nan	1.109	0.242	0.095	0.393	0.602	0.718
1127	chr10	18896253	18898097	+	0	NA	Intergenic	Intergenic	52104	NM_022032	64058	Mm.28209	NM_022032	ENSMUSG00000019851	Perp	1110017A08Rik|KCP1|KRTCAP1|PIGPC1|THW	PERP, TP53 apoptosis effector	protein-coding	3.717	1.975	0.932	2.567	1.235	0.303	1.488	3.250	3.068	2.299	2.726	1.874	2.509	3.841	4.727	4.285	3.253	4.411	2.097	1.137	0.659	2.024	0.487	0.300	4.531
4237	chr13	69671921	69675762	+	0	NA	Intergenic	Intergenic	61825	NM_145354	28114	Mm.260009	NM_145354	ENSMUSG00000021595	Nsun2	D13Wsu123e|Misu	NOL1/NOP2/Sun domain family member 2	protein-coding	5.500	8.121	2.023	7.873	2.647	2.190	6.937	5.930	3.938	10.558	6.358	3.134	6.357	8.553	7.680	nan	2.930	7.798	4.366	1.742	2.169	4.801	2.631	4.801	13.147
14060	chr8	18661098	18664066	+	0	NA	intron (NM_173189, intron 9 of 13)	intron (NM_173189, intron 9 of 13)	67409	NM_173189	244329	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT	microcephaly, primary autosomal recessive 1	protein-coding	2.655	1.000	0.506	3.471	1.704	0.839	2.962	3.614	2.445	3.092	0.838	0.661	4.921	4.092	5.994	6.076	3.247	5.576	4.343	2.994	2.743	8.672	3.224	2.168	4.277
10018	chr4	43417541	43421218	+	0	NA	intron (NM_199057, intron 2 of 11)	intron (NM_199057, intron 2 of 11)	9755	NM_177377	329831	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	3.329	nan	0.692	8.410	3.632	2.069	5.093	2.792	1.877	2.260	1.128	0.610	2.745	3.794	4.357	4.369	1.208	3.609	0.721	0.864	1.092	nan	0.502	0.582	2.954
4415	chr13	112476006	112477662	+	0	NA	intron (NM_010560, intron 3 of 16)	L1MA6|LINE|L1	12764	NM_010560	16195	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	5.504	11.790	3.823	9.187	5.458	5.416	7.693	6.881	3.102	16.653	4.435	3.269	3.880	4.993	7.338	7.877	4.418	6.890	4.189	2.518	6.967	4.837	4.406	9.067	16.864
15276	chr9	71510022	71519388	+	0	NA	intron (NM_001033208, intron 12 of 12)	intron (NM_001033208, intron 12 of 12)	-28722	NM_178602	28015	Mm.21094	NM_178602	ENSMUSG00000032199	Polr2m	AA407243|AA408799|AI303746|AW553238|D9Wsu138e|Grinl1a|mKIAA4185	polymerase (RNA) II (DNA directed) polypeptide M	protein-coding	7.499	0.631	0.580	5.465	5.570	4.127	6.130	7.822	6.860	7.366	4.848	3.489	7.167	10.064	nan	8.912	5.267	8.457	nan	1.194	1.101	1.149	1.402	1.217	9.302
4850	chr14	75415871	75420281	+	0	NA	Intergenic	RMER5|LTR|ERV1	-29930	NR_030568	100124475		NR_030568	ENSMUSG00000077981	Mir466f-3	Mirn466f-3	microRNA 466f-3	ncRNA	2.488	12.576	6.546	2.231	0.883	0.725	0.830	1.738	1.859	1.835	0.949	0.516	0.793	nan	1.729	1.860	1.192	1.671	0.776	1.012	1.003	0.610	0.594	0.520	2.331
9946	chr4	11933363	11938531	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	29766	NM_001098231	381511	Mm.331489	NM_001033453	ENSMUSG00000049225	Pdp1	Gm1024|Ppm2c	pyruvate dehyrogenase phosphatase catalytic subunit 1	protein-coding	6.707	1.432	0.637	3.356	3.002	1.524	4.466	5.966	4.121	5.615	4.461	2.315	6.138	6.234	5.018	6.624	4.051	5.192	3.631	nan	1.236	2.733	2.905	1.664	5.425
13168	chr7	52172287	52174269	+	0	NA	Intergenic	(TTTC)n|Simple_repeat|Simple_repeat	-157562	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	3.745	1.039	0.696	4.803	2.336	1.845	2.928	4.146	2.795	4.113	1.486	1.974	3.907	5.169	2.701	3.335	1.651	5.741	4.084	1.766	1.628	1.939	3.739	2.859	5.541
2222	chr11	54844969	54847515	+	0	NA	intron (NM_029327, intron 4 of 4)	intron (NM_029327, intron 4 of 4)	14349	NM_029327	75530	Mm.83578	NM_029327	ENSMUSG00000020268	Lyrm7	1700024C24Rik|9330147L21Rik	LYR motif containing 7	protein-coding	6.359	7.584	1.324	6.850	2.090	1.059	4.779	4.130	2.918	5.210	1.600	1.234	4.271	5.733	7.680	8.710	3.984	5.265	nan	1.541	1.526	3.169	1.929	1.280	9.249
1900	chr11	3845811	3847765	+	0	NA	intron (NM_152818, intron 1 of 13)	intron (NM_152818, intron 1 of 13)	17115	NM_152818	74309	Mm.61022	NM_152818	ENSMUSG00000020435	Osbp2	1700095P05Rik|C630001G20Rik|Gm244|ORP-4|OSBPL1	oxysterol binding protein 2	protein-coding	1.798	0.339	0.537	2.430	2.610	1.444	5.998	2.238	2.419	2.603	2.513	1.695	3.166	4.513	3.009	2.337	3.624	2.032	0.581	nan	0.544	0.472	0.218	0.459	3.734
5915	chr16	23248605	23250809	+	0	NA	intron (NM_001252505, intron 1 of 7)	Lx7|LINE|L1	23686	NM_001252505	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	6.306	5.157	4.216	2.046	5.948	3.276	5.473	6.319	2.697	3.884	1.333	1.006	6.025	8.177	3.669	nan	5.864	2.996	1.300	2.498	1.379	0.953	nan	1.325	3.726
6154	chr16	70329232	70330630	+	0	NA	intron (NM_028803, intron 1 of 15)	MER33|DNA|hAT-Charlie	15982	NM_028803	74185	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	2.334	1.047	0.886	1.916	2.028	0.976	2.409	0.991	1.308	1.283	1.147	0.718	3.970	4.606	2.589	3.600	2.511	2.697	0.776	0.636	0.522	0.467	0.550	0.584	2.776
7495	chr19	5739224	5750767	+	0	NA	intron (NM_008520, intron 2 of 27)	intron (NM_008520, intron 2 of 27)	4091	NM_008520	16998	Mm.182396	NM_008520	ENSMUSG00000024940	Ltbp3	Ltbp2|mFLJ00070	latent transforming growth factor beta binding protein 3	protein-coding	3.917	1.176	0.484	3.979	3.728	2.127	8.237	10.949	nan	5.403	4.165	2.113	4.892	8.737	5.049	nan	5.751	4.416	0.822	1.344	1.136	2.582	1.747	1.396	8.718
12581	chr6	113022120	113032721	+	0	NA	Intergenic	Intergenic	-18907	NM_008188	14911	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	8.426	7.204	3.104	6.169	6.904	3.930	8.959	9.732	5.042	7.872	6.341	4.101	7.726	10.528	7.920	9.457	7.997	7.610	4.932	3.323	2.380	3.946	nan	3.247	7.957
3460	chr12	77905989	77907081	+	0	NA	Intergenic	Intergenic	-320120	NM_172952	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	2.977	0.818	0.339	2.225	2.496	0.973	1.846	2.944	1.682	2.118	3.028	2.453	3.348	3.840	4.177	3.013	1.714	4.230	0.911	0.206	0.224	0.801	0.330	0.103	4.732
954	chr1	182842304	182843972	+	0	NA	intron (NM_144796, intron 2 of 7)	intron (NM_144796, intron 2 of 7)	78232	NM_144796	96935	Mm.331052	NM_144796	ENSMUSG00000038576	Susd4	AI848994|E430021N18Rik|N28096	sushi domain containing 4	protein-coding	1.202	9.527	3.460	1.738	0.744	0.231	2.757	1.803	1.265	0.854	5.368	3.397	1.386	1.761	1.701	1.820	0.906	1.651	0.741	0.714	0.282	1.817	1.535	0.545	1.229
10404	chr4	116228059	116231330	+	0	NA	intron (NM_181585, intron 1 of 9)	URR1A|DNA|hAT-Charlie	7780	NM_181585	18710	Mm.253819	NM_181585	ENSMUSG00000028698	Pik3r3	AA414954|p55pik	phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)	protein-coding	12.214	13.688	6.136	11.521	5.460	2.653	7.614	8.855	8.688	10.063	8.870	5.945	9.975	11.837	11.536	12.490	7.945	10.822	9.688	4.901	2.936	10.298	4.437	3.380	13.658
4524	chr14	22404538	22407652	+	0	NA	intron (NM_028275, intron 2 of 6)	intron (NM_028275, intron 2 of 6)	136703	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	4.239	1.141	0.782	2.209	2.148	0.898	3.853	5.334	nan	2.623	5.468	3.560	3.143	4.691	3.584	3.097	3.141	1.964	2.483	1.283	0.569	nan	1.708	0.941	2.500
801	chr1	163186859	163188743	+	0	NA	Intergenic	Intergenic	-102131	NM_030071	78258	Mm.78368	NM_030071	ENSMUSG00000071890	Mroh9	4921528O07Rik|Armc11	maestro heat-like repeat family member 9	protein-coding	5.056	0.792	0.612	4.001	1.642	0.554	1.657	3.405	3.895	4.319	2.643	2.423	3.852	4.698	2.741	4.656	2.832	4.026	0.996	0.190	0.196	nan	nan	0.213	3.081
5376	chr15	77073083	77077613	+	0	NA	Intergenic	A-rich|Low_complexity|Low_complexity	-9050	NR_108037	74303	Mm.444304	NR_108037	ENSMUSG00000097267	1700109K24Rik	4933425G21Rik	RIKEN cDNA 1700109K24 gene	ncRNA	2.296	nan	0.286	2.304	1.535	0.651	1.886	3.962	1.850	nan	nan	1.063	2.016	2.607	1.831	2.021	nan	2.741	3.110	2.458	0.794	5.653	2.506	1.074	1.465
12672	chr6	120888519	120890628	+	0	NA	3' UTR (NM_153516, exon 7 of 7)	3' UTR (NM_153516, exon 7 of 7)	27247	NM_007544	12122	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	0.850	16.506	8.526	0.940	0.516	0.187	0.405	1.035	0.512	0.502	0.304	0.305	0.218	nan	0.474	0.895	0.483	0.742	0.608	0.897	0.596	0.504	nan	0.595	0.736
10577	chr4	129660128	129666197	+	0	NA	intron (NM_008468, intron 1 of 13)	B3|SINE|B2	9605	NM_008468	16650	Mm.202358	NM_008468	ENSMUSG00000003731	Kpna6	IPOA7|Kpna5|NPI-2	karyopherin (importin) alpha 6	protein-coding	0.420	1.215	0.402	0.798	0.488	0.333	0.443	0.459	0.530	0.957	0.353	0.181	0.191	0.517	nan	0.711	0.204	0.779	4.493	1.764	2.586	5.777	3.109	3.554	1.041
9527	chr3	95084436	95089341	+	0	NA	intron (NM_001293707, intron 1 of 14)	B1_Mur4|SINE|Alu	20042	NM_001293707	18720	Mm.296409	NM_008847	ENSMUSG00000028126	Pip5k1a	PI4P5K-I[a]|PIP5K1-alpha|PIP5KIalpha|Pipk5a	phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha	protein-coding	12.321	8.252	2.841	13.008	6.085	3.333	12.400	11.153	9.635	10.999	10.896	6.065	13.597	14.490	11.897	12.191	9.842	12.758	6.513	3.708	3.331	6.997	4.317	4.592	15.704
14696	chr8	123007128	123033868	+	0	NA	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	21786	NR_037865	77087	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	5.400	nan	1.631	nan	3.245	2.046	nan	8.274	3.247	5.099	1.788	2.270	5.681	6.421	nan	7.039	4.742	nan	nan	3.909	4.107	9.926	3.940	3.993	nan
10149	chr4	62144828	62149884	+	0	NA	TTS (NM_001009550)	TTS (NM_001009550)	3485	NM_001009550	381531	Mm.472122	NM_001009550	ENSMUSG00000066153	Mup21	Gm11208|Mup|Mup26|OTTMUSG00000000231|bM64F17.1|bM64F17.4	major urinary protein 21	protein-coding	3.970	nan	0.574	2.508	2.428	1.175	4.074	4.518	2.730	3.476	3.046	1.782	4.179	5.794	4.706	5.293	2.724	3.468	nan	1.610	0.753	3.756	1.740	0.981	6.890
3151	chr12	3718328	3720784	+	0	NA	intron (NR_027869, intron 10 of 20)	intron (NR_027869, intron 10 of 20)	-87424	NM_007872	13435	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	2.696	0.730	0.213	1.138	1.967	1.126	4.720	3.185	2.025	1.829	2.056	2.742	3.222	2.992	5.360	4.015	2.996	3.493	2.144	0.627	0.799	1.538	0.887	0.686	2.871
8165	chr2	34226002	34229555	+	0	NA	intron (NM_016768, intron 2 of 8)	intron (NM_016768, intron 2 of 8)	-120043	NR_130173	329387	Mm.125817	NR_130173	ENSMUSG00000087461	C230014O12Rik	-	RIKEN cDNA C230014O12 gene	ncRNA	4.507	7.524	2.500	8.673	3.418	3.148	4.443	4.880	3.865	nan	3.524	2.928	5.814	5.088	7.666	7.073	4.894	8.010	5.261	1.358	2.529	5.244	2.724	6.144	12.633
13897	chr7	148659749	148664288	+	0	NA	Intergenic	Intergenic	3347183	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	10.297	5.217	1.350	9.755	6.101	3.548	10.342	11.514	5.404	9.229	5.211	2.550	10.631	12.602	9.151	9.609	7.271	8.338	3.255	2.104	1.982	4.146	nan	2.947	15.269
5680	chr15	100576957	100581284	+	0	NA	intron (NM_001304965, intron 10 of 10)	(TA)n|Simple_repeat|Simple_repeat	7245	NM_010127	19009	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	9.130	1.557	1.301	1.739	3.674	2.115	8.772	11.550	4.039	5.470	1.413	1.353	9.262	6.919	5.211	nan	9.694	4.025	1.203	2.030	1.855	0.914	1.775	1.573	5.332
10973	chr4	153869024	153875220	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	78354	NR_040670	407793	Mm.260950	NR_040670		BC039966	-	cDNA sequence BC039966	ncRNA	2.878	0.489	0.188	3.688	1.482	0.817	4.707	5.505	3.096	4.708	2.967	1.865	4.959	5.774	5.490	6.245	2.785	5.196	1.244	0.496	0.263	0.948	0.767	0.704	6.634
3061	chr11	118183151	118184229	+	0	NA	intron (NM_001112699, intron 7 of 12)	intron (NM_001112699, intron 7 of 12)	29052	NM_001112700	19157	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	2.199	nan	0.244	3.252	3.645	2.360	1.121	2.144	2.001	2.171	1.668	0.874	1.233	3.253	2.074	1.510	1.338	2.555	0.928	1.894	1.023	2.219	2.124	1.209	1.850
14053	chr8	13686254	13689422	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-10251	NM_009025	19414	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	3.278	3.399	1.988	3.198	1.224	0.976	2.881	4.250	4.016	3.645	3.342	4.033	5.926	4.705	4.767	5.865	4.788	4.171	0.936	1.731	2.532	0.952	0.671	1.009	5.597
10925	chr4	150057156	150062365	+	0	NA	Intergenic	Intergenic	-8694	NR_029751	723848		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	5.931	nan	0.648	3.881	4.489	2.631	4.202	7.424	4.850	5.676	1.692	2.292	3.330	7.146	5.478	6.204	2.927	6.818	2.859	0.796	0.612	5.955	1.775	1.181	5.543
1563	chr10	86240740	86243457	+	0	NA	intron (NM_013722, intron 6 of 13)	intron (NM_013722, intron 6 of 13)	-58314	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	nan	9.538	3.004	8.923	5.237	2.870	5.569	5.461	3.260	7.137	4.222	2.928	4.407	6.634	5.275	7.684	7.541	nan	4.637	2.965	2.477	nan	3.852	2.769	14.249
12903	chr7	4602889	4611380	+	0	NA	Intergenic	Intergenic	-3093	NM_207270	545902	Mm.188925	NM_207270	ENSMUSG00000035429	Ptprh	R-PTP-H|sap-1	protein tyrosine phosphatase, receptor type, H	protein-coding	6.591	13.953	4.529	6.192	3.431	1.545	5.087	5.809	4.101	6.075	3.008	2.220	4.365	5.601	5.906	6.118	4.398	6.315	3.325	2.774	1.195	2.866	3.279	1.779	7.876
1003	chr1	186975364	186977212	+	0	NA	Intergenic	B1_Mur4|SINE|Alu	8872	NM_033077	110957	Mm.108054	NM_033077	ENSMUSG00000039224	D1Pas1	Pl10	DNA segment, Chr 1, Pasteur Institute 1	protein-coding	0.505	0.422	0.356	0.361	0.103	0.086	0.219	0.605	0.352	0.454	6.772	1.423	0.106	0.228	0.284	nan	0.433	0.519	0.571	0.441	0.544	0.969	0.491	0.399	0.635
14838	chr8	131203764	131212585	+	0	NA	Intergenic	Intergenic	1944544	NR_144501	102635552		NM_001346808		Gm32856	-	predicted gene, 32856	protein-coding	7.160	nan	2.129	nan	4.541	3.486	nan	nan	5.215	7.223	4.238	3.846	5.802	5.803	nan	6.462	6.055	nan	nan	2.128	1.859	nan	1.566	nan	nan
5845	chr16	18499023	18510652	+	0	NA	intron (NR_104347, intron 2 of 8)	intron (NR_104347, intron 2 of 8)	5966	NR_104347	13972	Mm.236139	NM_023120	ENSMUSG00000000884	Gnb1l	ESTM55|Gm16314|Me49f07|OTTMUSG00000033458|Wdr14|Wdvcf	guanine nucleotide binding protein (G protein), beta polypeptide 1-like	protein-coding	1.513	1.566	0.523	0.973	0.465	0.312	1.149	1.007	0.868	nan	0.874	0.573	1.012	0.865	1.113	nan	1.278	1.609	4.346	2.750	2.250	5.284	5.014	3.876	2.261
6055	chr16	37683003	37686258	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-30262	NM_026610	68194	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	6.130	2.785	1.193	3.233	2.376	1.389	5.519	5.934	2.481	3.338	2.706	1.771	5.217	6.574	7.016	8.287	3.903	5.058	6.318	3.902	3.021	6.319	5.536	3.886	7.837
14868	chr9	14479471	14482195	+	0	NA	intron (NM_173433, intron 1 of 1)	intron (NM_173433, intron 1 of 1)	19649	NM_173433	244694	Mm.240457	NM_173433	ENSMUSG00000053914	Kdm4d	4932416A15|Jmjd2d	lysine (K)-specific demethylase 4D	protein-coding	4.078	0.635	0.189	1.416	1.460	0.410	4.834	5.320	1.651	1.836	5.564	2.361	3.241	3.697	4.538	4.775	2.048	3.436	2.366	1.011	0.565	1.901	0.861	0.647	6.363
1800	chr10	120747089	120748396	+	0	NA	Intergenic	Intergenic	-17990	NR_038000	70874	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	1.971	4.709	1.260	7.608	1.162	0.962	1.266	2.062	2.990	8.035	0.745	1.524	2.077	2.057	4.223	5.026	2.063	4.995	5.596	2.042	3.781	8.453	3.072	5.223	7.174
4230	chr13	64522569	64524388	+	0	NA	Intergenic	L1_Mus2|LINE|L1	-25686	NM_001195435	68880	Mm.390594	NM_001195435	ENSMUSG00000096537	1190003K10Rik	-	RIKEN cDNA 1190003K10 gene	protein-coding	2.916	0.671	0.376	1.715	2.961	1.960	3.452	2.547	1.533	1.466	4.592	4.191	2.111	4.218	2.781	nan	0.498	2.667	1.366	0.679	0.736	0.863	0.853	0.819	1.903
1717	chr10	110940470	110949347	+	0	NA	intron (NM_172554, intron 16 of 16)	intron (NM_172554, intron 16 of 16)	24732	NM_007792	13008	Mm.2020	NM_007792	ENSMUSG00000020186	Csrp2	AW551867|Crp2|SmLim	cysteine and glycine-rich protein 2	protein-coding	8.471	3.613	1.426	6.237	4.842	2.849	9.193	6.511	nan	10.602	7.572	5.787	7.348	10.333	8.330	8.365	6.999	8.886	1.765	1.137	1.020	1.633	1.577	1.215	9.973
13778	chr7	135019404	135020951	+	0	NA	intron (NM_001033420, intron 29 of 51)	intron (NM_001033420, intron 29 of 51)	-81747	NM_001143802	627214	Mm.323610	NM_001143802	ENSMUSG00000073805	Fam196a	B830028B13Rik	family with sequence similarity 196, member A	protein-coding	14.874	22.802	4.840	17.253	5.843	3.503	12.136	15.380	7.277	18.021	11.259	7.922	12.661	15.718	15.695	15.261	8.734	14.505	6.911	4.082	3.856	9.512	4.625	6.835	24.026
4349	chr13	102528340	102531693	+	0	NA	Intergenic	Lx8|LINE|L1	-163542	NM_008533	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly78|RP105	CD180 antigen	protein-coding	5.943	4.347	2.122	4.143	3.272	1.632	3.192	4.706	3.199	3.559	2.729	2.107	3.352	5.387	3.940	5.468	3.783	4.824	1.095	1.767	0.868	1.105	1.003	0.879	5.562
2557	chr11	84692857	84695018	+	0	NA	Intergenic	RMER20C_Mm|LTR|ERVK	26495	NR_046197	78471	Mm.47152	NR_046197	ENSMUSG00000085044	1700109G15Rik	-	RIKEN cDNA 1700109G15 gene	ncRNA	7.053	11.664	3.029	8.220	2.179	2.017	6.967	6.127	4.473	8.479	6.366	3.503	5.485	7.877	7.916	9.678	5.175	7.627	4.804	2.060	2.168	6.753	2.519	3.083	10.721
9171	chr3	21882223	21891426	+	0	NA	Intergenic	Intergenic	-189828	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	3.372	9.604	4.676	3.730	1.824	0.885	3.902	3.536	3.667	3.083	2.519	1.092	5.166	3.664	4.558	4.777	3.794	4.694	0.706	0.880	0.481	1.158	0.345	0.270	2.813
1634	chr10	94613532	94615491	+	0	NA	Intergenic	ORR1C2-int|LTR|ERVL-MaLR	-28312	NR_106070	102466817		NR_106070	ENSMUSG00000098544	Mir7211	Gm27536|mmu-mir-7211	microRNA 7211	ncRNA	5.053	1.962	0.997	3.521	4.220	1.866	2.505	2.643	2.777	3.534	nan	0.959	1.895	3.782	2.664	2.832	2.507	4.063	nan	1.011	0.688	2.748	1.189	0.990	2.964
14781	chr8	127355281	127358227	+	0	NA	intron (NM_001309391, intron 5 of 24)	intron (NM_001309391, intron 5 of 24)	57102	NM_001013580	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	5.378	nan	0.264	5.764	6.142	3.249	5.933	6.606	6.061	8.714	5.740	1.898	9.609	11.242	7.550	9.140	3.988	8.817	nan	0.549	0.603	nan	0.541	nan	8.825
14523	chr8	107849509	107852012	+	0	NA	Intergenic	Intergenic	-262278	NM_010817	17463	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	8.766	7.348	2.945	6.715	3.012	1.625	5.802	8.735	4.819	6.616	4.230	3.069	7.614	8.682	8.420	10.097	7.133	7.872	3.396	3.328	2.135	5.979	2.339	2.188	12.502
12899	chr7	3656867	3659869	+	0	NA	exon (NM_146176, exon 15 of 18)	exon (NM_146176, exon 15 of 18)	2406	NR_039587	100628594		NR_039587	ENSMUSG00000093290	Mir3572	mir-3572|mmu-mir-3572	microRNA 3572	ncRNA	4.588	3.066	1.183	3.363	1.733	1.222	3.747	3.540	2.876	2.640	4.093	1.904	4.756	4.192	4.781	4.161	3.606	4.504	0.601	0.748	0.583	0.666	0.401	0.145	5.324
1848	chr10	127079093	127081949	+	0	NA	exon (NM_001301014, exon 1 of 18)	exon (NM_001301014, exon 1 of 18)	1614	NM_001033263	216439	Mm.336761	NM_001033263	ENSMUSG00000025422	Agap2	AGAP-2|Centg1|PIKE|cnt-g1|mKIAA0167	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding	17.688	13.942	4.953	13.631	10.890	7.199	11.878	12.783	7.059	12.843	13.286	5.961	11.411	16.382	10.986	12.564	11.469	10.133	5.320	4.271	4.802	4.088	nan	5.143	19.073
4882	chr14	78060741	78063284	+	0	NA	Intergenic	Intergenic	26995	NM_177629	219170	Mm.320428	NM_177629	ENSMUSG00000045655	Fam216b	9330158N17|AU021034	family with sequence similarity 216, member B	protein-coding	0.760	0.460	0.358	0.428	0.276	0.049	0.237	0.463	0.622	0.443	0.490	0.240	0.189	nan	0.239	0.695	0.333	0.573	3.528	3.369	1.429	4.986	4.622	2.417	0.696
7067	chr18	23573178	23575153	+	0	NA	intron (NM_001285817, intron 4 of 19)	intron (NM_001285817, intron 4 of 19)	76683	NM_001285810	13527	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	6.454	2.110	1.361	4.473	3.482	1.829	5.047	3.984	2.844	3.541	0.865	0.561	4.656	4.611	4.003	4.835	3.937	6.601	nan	1.330	1.000	nan	1.933	0.930	5.665
15819	chrX	137043689	137048915	+	0	NA	Intergenic	Intergenic	-3292	NM_146261	245622	Mm.260106	NM_146261	ENSMUSG00000042595	Fam199x	-	family with sequence similarity 199, X-linked	protein-coding	5.360	1.805	1.239	6.528	4.318	3.005	2.311	5.145	4.235	6.734	3.301	1.473	4.017	7.238	2.462	4.667	2.661	5.511	0.815	1.280	0.876	1.398	1.314	1.054	4.423
12769	chr6	134315884	134318005	+	0	NA	Intergenic	Intergenic	-79385	NM_025778	66813	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	2.424	5.232	1.598	2.513	0.928	0.287	1.140	1.216	1.025	1.339	6.454	1.393	1.010	1.396	nan	1.370	0.801	2.005	nan	1.223	0.520	1.392	0.553	0.051	2.198
14831	chr8	129631150	129635230	+	0	NA	Intergenic	Intergenic	369560	NR_144501	102635552		NM_001346808		Gm32856	-	predicted gene, 32856	protein-coding	1.655	nan	0.404	nan	0.917	0.776	nan	nan	1.261	1.019	8.538	3.477	1.461	1.544	nan	2.068	1.910	1.711	nan	1.030	0.611	nan	0.546	nan	1.713
13935	chr7	151171658	151176110	+	0	NA	Intergenic	Intergenic	5859049	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	nan	nan	0.327	nan	0.669	0.277	5.150	5.588	nan	1.667	0.416	0.208	7.348	5.028	3.847	4.986	3.317	2.734	0.540	0.354	0.211	0.501	nan	0.252	5.137
8288	chr2	60699978	60703510	+	0	NA	intron (NM_001159564, intron 1 of 17)	intron (NM_001159564, intron 1 of 17)	20859	NM_001159564	16420	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	5.492	1.274	0.735	3.252	2.807	1.135	3.404	5.346	3.337	4.350	2.525	1.577	4.798	5.256	3.471	5.322	4.341	5.782	1.386	1.351	0.659	1.734	0.985	0.488	6.602
4706	chr14	57286372	57288393	+	0	NA	intron (NM_030004, intron 5 of 7)	intron (NM_030004, intron 5 of 7)	111101	NM_030004	68631	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	7.446	9.601	4.176	7.386	4.341	1.486	6.216	9.960	4.683	6.293	4.816	2.906	4.924	8.066	7.380	7.963	5.401	6.390	6.026	4.599	3.317	5.720	4.784	4.113	10.626
13835	chr7	140238303	140240340	+	0	NA	Intergenic	L1Md_F3|LINE|L1	-7980	NM_175533	244234	Mm.85125	NM_175533	ENSMUSG00000054672	5830411N06Rik	Scart2	RIKEN cDNA 5830411N06 gene	protein-coding	4.319	nan	0.633	3.808	2.078	1.310	3.743	5.102	2.621	2.873	1.079	1.093	2.992	3.376	3.673	3.852	2.343	4.832	0.695	0.788	0.358	0.721	0.703	0.185	4.769
2486	chr11	76659406	76661016	+	0	NA	Intergenic	Intergenic	-12259	NM_177182	320522	Mm.131585	NM_177182	ENSMUSG00000044243	Bhlha9	A830053O21Rik|Fingerin	basic helix-loop-helix family, member a9	protein-coding	8.363	5.082	1.035	9.391	3.077	3.056	5.227	7.450	5.329	11.203	8.313	5.722	5.308	6.211	7.768	8.536	4.684	7.888	6.545	4.157	4.457	6.559	5.942	7.420	11.260
5793	chr16	10979293	10984261	+	0	NA	intron (NM_019980, intron 1 of 3)	intron (NM_019980, intron 1 of 3)	11344	NM_019980	56722	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	5.476	3.185	1.497	3.025	2.537	1.759	nan	4.013	3.676	3.320	3.824	3.353	4.122	3.557	2.797	4.292	2.763	4.670	3.308	2.760	3.379	3.959	3.414	3.074	3.598
8931	chr2	161395567	161403180	+	0	NA	Intergenic	Intergenic	-290287	NR_126509	71389	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	5.233	0.280	0.305	2.217	1.883	0.677	4.345	6.942	nan	nan	0.566	1.168	6.244	5.563	7.224	7.040	6.007	5.281	nan	0.482	0.322	1.115	0.665	0.463	5.574
12880	chr6	147858750	147861159	+	0	NA	Intergenic	Lx4B|LINE|L1	169713	NR_033636	100039727	Mm.396220	NR_033636	ENSMUSG00000085077	1700049E15Rik	Gm15761|OTTMUSG00000026044	RIKEN cDNA 1700049E15 gene	ncRNA	3.108	0.697	0.428	nan	1.879	1.257	6.295	3.766	2.993	4.163	0.689	1.380	6.929	4.324	5.156	8.297	6.147	4.907	2.028	nan	1.117	nan	1.106	0.874	nan
3277	chr12	35730760	35736710	+	0	NA	Intergenic	Intergenic	-38617	NR_045050	71581	Mm.100110	NR_045050		9130015A21Rik	100043575|Gm4527	RIKEN cDNA 9130015A21 gene	ncRNA	8.963	8.160	3.138	6.906	4.452	3.358	6.391	4.944	5.664	8.804	3.965	3.084	7.209	7.234	7.665	8.539	6.176	9.371	nan	1.365	1.871	2.371	1.362	1.626	11.386
2317	chr11	62838472	62843287	+	0	NA	exon (NM_053169, exon 6 of 6)	exon (NM_053169, exon 6 of 6)	-6244	NM_001033669	213980	Mm.482259	NM_001033669	ENSMUSG00000090173	Fbxw10	Fbw10|HREP|SM25H2|SM2SH2	F-box and WD-40 domain protein 10	protein-coding	4.036	1.026	0.298	3.473	2.826	0.877	2.212	3.123	3.692	5.280	1.573	1.079	2.954	5.191	2.847	3.951	2.988	5.338	nan	0.819	0.320	1.372	0.840	0.499	3.111
6015	chr16	32863128	32868490	+	0	NA	intron (NM_172615, intron 1 of 18)	intron (NM_172615, intron 1 of 18)	2557	NM_001200038	100502698	Mm.327319	NM_172615	ENSMUSG00000035629	Rubcn	1700021K19Rik|5330403K09|Kiaa0226|Rubicon|mKIAA0226	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	protein-coding	10.037	6.331	4.338	3.947	6.243	2.902	6.863	11.471	4.026	5.555	4.427	2.534	nan	10.321	6.934	nan	6.515	7.664	3.480	2.494	1.440	2.786	nan	2.721	8.229
15248	chr9	69137132	69138701	+	0	NA	intron (NM_013646, intron 1 of 10)	intron (NM_013646, intron 1 of 10)	-151925	NM_001289916	19883	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	9.300	8.500	1.784	12.523	5.645	4.501	5.810	9.844	3.902	13.256	0.949	1.249	3.634	8.095	7.602	11.396	4.958	8.895	7.350	3.241	4.928	8.343	5.350	7.488	16.551
9582	chr3	97834661	97836144	+	0	NA	intron (NM_001039376, intron 3 of 46)	intron (NM_001039376, intron 3 of 46)	53305	NM_001289702	83679	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	4.404	2.391	1.806	4.229	3.397	2.800	3.694	3.194	2.382	3.327	3.458	2.670	2.772	3.872	4.093	4.787	2.829	5.385	2.482	2.587	2.147	1.101	2.985	2.837	3.368
1433	chr10	75116054	75117400	+	0	NA	intron (NM_001081412, intron 1 of 22)	intron (NM_001081412, intron 1 of 22)	55831	NM_001081412	110279	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	0.888	1.225	0.369	1.270	1.698	1.129	0.840	2.607	0.728	1.481	0.420	0.352	1.894	3.482	1.647	2.652	0.935	2.083	nan	0.246	0.233	0.812	0.270	0.342	2.022
15321	chr9	75806958	75809242	+	0	NA	intron (NM_007555, intron 1 of 6)	B2_Mm1a|SINE|B2	32735	NM_007555	12160	Mm.428950	NM_007555	ENSMUSG00000032179	Bmp5	AU023399|se	bone morphogenetic protein 5	protein-coding	1.885	0.528	0.164	2.216	0.751	0.218	2.832	3.413	3.052	2.413	1.380	2.074	3.942	2.445	2.729	3.632	1.887	3.757	0.828	nan	0.054	0.558	0.123	0.251	nan
13288	chr7	74873050	74874752	+	0	NA	Intergenic	Intergenic	-156310	NR_131122	75205	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	-	RIKEN cDNA 4930533N22 gene	ncRNA	1.099	0.645	0.461	nan	0.272	0.148	1.350	1.337	0.774	1.970	0.347	0.295	2.818	3.174	2.373	2.969	1.218	2.660	0.687	0.300	0.409	0.488	0.152	0.166	2.540
8919	chr2	160442430	160448346	+	0	NA	Intergenic	MIRb|SINE|MIR	-78323	NM_010658	16658	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	8.329	1.638	1.230	4.532	4.839	3.554	6.948	7.310	nan	5.120	3.011	1.810	6.568	nan	6.798	7.971	7.740	5.832	nan	1.256	1.019	1.200	1.150	0.720	7.015
1666	chr10	96172132	96175088	+	0	NA	Intergenic	Intergenic	-52597	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	3.811	1.161	0.828	3.038	4.191	2.506	3.528	2.239	3.758	3.519	nan	0.921	3.879	4.429	3.765	4.724	3.927	4.540	nan	1.041	0.762	nan	1.221	0.804	3.809
11575	chr5	113541247	113543584	+	0	NA	Intergenic	Intergenic	-8005	NM_177292	320916	Mm.102783	NM_177292	ENSMUSG00000063430	Wscd2	4933413A10Rik|C530024P05Rik|Gm450	WSC domain containing 2	protein-coding	3.075	1.243	0.691	4.717	3.232	1.931	3.999	3.556	3.616	4.012	3.533	2.271	3.085	5.051	4.335	4.890	2.165	5.941	nan	nan	1.197	1.856	nan	1.153	3.969
6477	chr17	28426420	28428429	+	0	NA	intron (NM_010220, intron 5 of 10)	L1MC4a|LINE|L1	58725	NM_010220	14229	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	4.734	1.658	1.473	1.793	2.544	2.289	8.402	5.689	3.573	3.741	2.034	2.458	4.769	5.740	4.562	6.406	5.264	4.211	5.704	2.876	6.113	5.482	6.273	7.625	7.999
10535	chr4	127229374	127232142	+	0	NA	intron (NM_001302081, intron 8 of 11)	B1_Mur4|SINE|Alu	-13026	NM_030252	80284	Mm.139607	NM_030252	ENSMUSG00000042380	Smim12	BC003266	small integral membrane protein 12	protein-coding	6.147	0.338	0.377	1.048	0.803	0.449	5.919	2.835	2.620	5.039	0.686	0.416	4.355	4.896	nan	1.620	4.657	3.119	0.525	0.763	0.266	0.339	0.561	0.411	2.140
922	chr1	180116934	180119379	+	0	NA	intron (NM_001346805, intron 20 of 34)	intron (NM_001346805, intron 20 of 34)	75329	NM_001163290	67426	Mm.38330	NM_023341	ENSMUSG00000026489	Coq8a	4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451	coenzyme Q8A	protein-coding	6.862	5.462	1.867	5.148	2.556	1.325	3.573	4.635	3.875	4.936	1.847	2.193	5.522	nan	5.454	6.825	5.304	6.698	3.453	1.548	0.968	3.980	1.436	1.617	5.395
3740	chr12	112772711	112777397	+	0	NA	Intergenic	Intergenic	14399	NM_178911	104759	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	10.965	11.938	3.538	9.472	5.414	4.180	10.058	9.491	nan	11.785	5.765	4.080	11.948	11.992	11.526	13.183	9.328	9.069	3.620	1.325	2.320	4.190	1.728	2.740	17.655
2741	chr11	98272915	98283289	+	0	NA	Intergenic	Intergenic	15496	NR_039579	100628613		NR_039579	ENSMUSG00000093176	Mir5119	mmu-mir-5119|mu-mir-5119	microRNA 5119	ncRNA	4.786	nan	0.376	5.190	4.322	2.619	5.714	7.076	4.105	5.619	5.224	3.090	5.407	7.176	6.140	6.071	nan	5.777	1.249	nan	0.750	0.698	nan	nan	6.879
2628	chr11	89981818	89984822	+	0	NA	3' UTR (NM_001316372, exon 5 of 5)	3' UTR (NM_001316372, exon 5 of 5)	19574	NM_008796	18559	Mm.5062	NM_008796	ENSMUSG00000020553	Pctp	PC-TP|StarD2	phosphatidylcholine transfer protein	protein-coding	1.811	0.461	0.262	3.961	1.338	0.481	0.294	0.608	0.972	0.751	0.311	0.522	0.368	0.695	0.946	0.951	0.557	1.717	0.557	0.756	0.632	nan	0.360	0.298	nan
2470	chr11	75373046	75387272	+	0	NA	intron (NM_001102611, intron 2 of 10)	B2_Mm2|SINE|B2	31726	NM_001102611	319822	Mm.340377	NM_177009	ENSMUSG00000018809	Smyd4	G430029E23Rik	SET and MYND domain containing 4	protein-coding	nan	6.795	2.938	5.964	4.403	2.994	6.429	5.409	4.772	5.951	5.284	2.723	4.989	7.811	6.783	7.881	4.998	6.313	2.068	1.810	nan	3.466	1.407	1.475	7.016
14683	chr8	122661625	122667547	+	0	NA	intron (NM_009824, intron 1 of 11)	intron (NM_009824, intron 1 of 11)	13589	NM_001109873	12398	Mm.194339	NM_009824	ENSMUSG00000006362	Cbfa2t3	A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2	core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	protein-coding	6.519	0.662	0.324	2.411	2.130	1.599	4.597	6.279	2.497	2.910	1.601	0.623	6.121	7.381	4.235	nan	5.510	4.004	0.637	0.830	0.625	0.948	0.468	0.244	4.265
14621	chr8	114262704	114272259	+	0	NA	intron (NM_173016, intron 3 of 8)	intron (NM_173016, intron 3 of 8)	61841	NM_173016	270097	Mm.334825	NM_173016	ENSMUSG00000046844	Vat1l	9430073I07|AI427515|mKIAA1576	vesicle amine transport protein 1 like	protein-coding	3.953	1.795	0.779	5.939	4.068	2.351	2.996	6.574	3.734	5.580	2.732	2.363	4.108	5.945	5.217	6.735	2.789	5.884	3.611	1.815	2.073	5.840	2.392	2.208	7.417
9195	chr3	27780756	27789092	+	0	NA	Intergenic	B1_Mur4|SINE|Alu	-74485	NM_173182	72007	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	2.192	0.665	0.465	nan	2.407	1.259	nan	3.482	nan	1.602	3.189	2.402	3.029	2.938	nan	2.525	2.103	nan	3.206	2.728	2.282	7.665	3.126	1.763	2.586
7044	chr18	15221595	15225791	+	0	NA	Intergenic	Lx2|LINE|L1	-72247	NM_134112	106931	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	7.482	6.321	1.968	4.783	1.909	1.074	4.855	5.577	3.674	9.265	8.005	3.164	6.586	5.687	5.278	6.032	5.387	6.200	0.969	0.945	1.171	1.327	1.113	2.499	18.577
12361	chr6	83451368	83454096	+	0	NA	intron (NM_001347313, intron 2 of 11)	RSINE1|SINE|B4	3660	NM_001347313	194388	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	3.385	3.023	1.571	5.394	1.921	1.042	1.022	2.014	1.976	2.323	5.425	2.084	1.139	3.452	1.757	2.210	1.817	3.069	nan	2.117	1.043	4.971	0.701	0.460	3.165
3456	chr12	77644579	77650369	+	0	NA	Intergenic	Intergenic	237333	NM_001252616	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	6.878	1.150	0.538	1.991	1.668	0.861	5.931	7.154	1.369	1.976	6.031	3.173	5.139	nan	3.466	nan	6.232	1.622	5.994	3.385	1.788	6.006	4.877	3.950	5.646
2251	chr11	59216070	59218448	+	0	NA	intron (NM_007476, intron 1 of 4)	intron (NM_007476, intron 1 of 4)	8898	NM_024210	67862	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	0.319	0.929	0.527	0.434	0.205	0.221	0.333	0.440	0.402	0.303	6.160	1.209	0.256	nan	0.326	0.691	0.298	0.561	nan	0.320	0.542	0.543	0.262	0.502	nan
11578	chr5	113635087	113637819	+	0	NA	intron (NM_008153, intron 1 of 2)	intron (NM_008153, intron 1 of 2)	13937	NM_008153	14747	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	4.876	1.608	0.658	4.782	3.028	2.238	6.733	5.428	2.932	3.963	6.991	3.534	2.979	5.201	2.997	3.803	2.660	4.494	3.722	4.745	4.814	5.357	4.421	2.954	3.835
9384	chr3	78981048	78986635	+	0	NA	Intergenic	Intergenic	161046	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	7.396	5.983	2.378	7.963	6.358	3.591	3.999	5.074	6.052	5.356	5.472	3.429	5.651	6.874	5.958	6.302	4.740	8.911	1.531	1.487	0.763	1.964	1.187	0.574	6.306
1086	chr10	8542234	8543493	+	0	NA	Intergenic	L1M4a1|LINE|L1	-24038	NM_177387	338362	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	2.652	0.595	0.853	2.979	2.397	0.913	2.507	1.607	2.179	3.120	1.014	0.474	2.600	4.410	3.654	3.335	2.582	2.899	1.248	0.973	0.675	0.778	1.074	1.112	3.802
8304	chr2	65075535	65077884	+	0	NA	Intergenic	B2_Mm1t|SINE|B2	-53943	NM_016719	50915	Mm.214554	NM_016719	ENSMUSG00000026888	Grb14	AI505286	growth factor receptor bound protein 14	protein-coding	7.289	4.116	0.702	10.463	1.588	1.241	7.227	10.562	4.042	11.152	5.283	2.132	9.082	7.864	8.946	11.953	8.487	8.440	4.178	1.023	2.618	5.075	2.604	4.574	20.380
8721	chr2	138185265	138190278	+	0	NA	Intergenic	Intergenic	-68813	NM_001025431	228662	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	2.469	0.326	0.246	1.929	1.668	0.854	1.588	1.622	4.644	4.347	9.688	1.344	1.840	1.510	1.499	2.816	2.857	3.388	0.995	0.723	0.237	0.520	0.574	0.305	1.728
15239	chr9	66866881	66897826	+	0	NA	intron (NM_173413, intron 1 of 7)	intron (NM_173413, intron 1 of 7)	37352	NM_173413	235442	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	5.368	1.580	0.693	4.744	3.335	1.690	6.170	5.841	6.389	7.094	5.822	3.588	7.235	9.135	7.995	7.812	4.125	7.691	nan	1.128	0.857	1.573	1.523	1.174	10.040
14408	chr8	86710587	86730264	+	0	NA	Intergenic	Intergenic	-25274	NR_027829	666945	Mm.391806	NR_027829		Gm10638	ENSMUSG00000074178	predicted gene 10638	ncRNA	7.222	5.045	1.631	10.359	8.990	6.873	6.510	7.803	nan	6.773	5.531	3.238	7.892	9.709	8.262	10.008	5.033	8.027	nan	2.316	2.695	5.245	2.271	2.133	9.548
10843	chr4	141779668	141781739	+	0	NA	intron (NM_172338, intron 4 of 14)	RLTR20C1_MM|LTR|ERVK	9941	NM_172338	214063	Mm.39102	NM_172338	ENSMUSG00000040697	Dnajc16	2900037O03Rik|4732437J24Rik|D030060M24|mKIAA0962	DnaJ heat shock protein family (Hsp40) member C16	protein-coding	2.287	1.173	0.424	2.963	1.152	0.620	2.182	2.722	1.560	1.995	2.110	0.808	2.011	1.898	2.690	2.725	1.816	3.463	0.883	0.494	0.508	1.000	nan	0.230	3.924
5854	chr16	19004322	19007338	+	0	NA	Intergenic	Intergenic	129080	NM_010435	15260	Mm.15694	NM_010435	ENSMUSG00000022702	Hira	AA138857|D16Ertd95e|Gm15797|N28177|OTTMUSG00000026264|Tuple1	histone cell cycle regulator	protein-coding	0.460	11.854	6.137	0.840	0.309	0.150	0.264	0.453	0.569	nan	0.167	0.136	0.344	0.344	0.507	nan	0.449	0.769	0.478	1.191	0.400	0.262	0.259	0.277	0.400
9178	chr3	27081323	27083374	+	0	NA	Intergenic	Intergenic	71506	NM_007900	13605	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536|mKIAA4037	ect2 oncogene	protein-coding	5.268	6.673	1.939	7.167	2.433	1.570	3.948	3.207	nan	4.417	2.222	1.831	7.495	6.926	6.378	6.435	3.187	6.753	4.746	2.908	1.977	7.431	3.479	2.344	9.611
7532	chr19	8926024	8927542	+	0	NA	TTS (NM_009073)	TTS (NM_009073)	2573	NM_009073	19881	Mm.426094	NM_009073	ENSMUSG00000071648	Rom1	M101156|Rgsc1156|Rom-1|Rosp1|Tspan23	rod outer segment membrane protein 1	protein-coding	1.655	1.250	0.743	3.692	1.036	0.830	3.189	4.278	nan	2.274	0.905	0.639	2.175	4.144	3.962	5.051	2.901	3.688	2.873	1.839	2.153	7.819	4.114	2.830	5.898
13976	chr8	8648574	8649876	+	0	NA	intron (NM_010111, intron 1 of 4)	intron (NM_010111, intron 1 of 4)	11548	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	2.398	0.948	0.197	1.862	1.277	0.663	2.706	6.446	1.795	1.662	2.205	1.241	1.990	3.716	3.593	4.024	2.335	2.981	0.686	1.241	0.367	1.447	0.678	0.426	3.148
12779	chr6	134680183	134686602	+	0	NA	intron (NM_026371, intron 2 of 3)	intron (NM_026371, intron 2 of 3)	42452	NM_026371	67774	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	1.240	0.744	0.625	1.284	1.858	0.654	1.440	1.996	1.302	1.113	0.974	0.707	0.977	1.479	nan	1.397	1.510	1.646	8.424	6.591	4.369	6.834	10.944	8.416	nan
15267	chr9	70680034	70691906	+	0	NA	intron (NM_007399, intron 1 of 15)	intron (NM_007399, intron 1 of 15)	6988	NM_007399	11487	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	9.152	3.761	2.323	4.837	6.607	3.776	6.879	7.137	6.397	7.516	7.448	5.891	6.419	9.297	7.691	7.875	5.604	7.603	nan	2.871	1.854	2.905	3.185	2.599	8.547
564	chr1	129517768	129525034	+	0	NA	intron (NM_172485, intron 2 of 27)	MTD|LTR|ERVL-MaLR	248097	NM_172485	210417	Mm.380518	NM_172485	ENSMUSG00000042581	Thsd7b	1700074E13Rik|B930082A18|D130067I03Rik	thrombospondin, type I, domain containing 7B	protein-coding	3.635	nan	0.772	2.487	4.006	2.820	4.616	3.764	4.245	5.194	1.514	1.981	5.834	5.942	4.768	7.612	5.087	3.905	nan	1.116	1.162	1.159	1.445	1.183	3.716
5839	chr16	17700055	17701801	+	0	NA	intron (NM_001285886, intron 2 of 16)	intron (NM_001285886, intron 2 of 16)	21972	NM_001285886	94112	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	5.871	0.872	0.745	1.034	3.265	1.986	4.662	7.019	2.006	1.775	0.628	0.549	4.031	4.528	3.610	3.697	4.775	4.623	0.496	0.632	0.514	0.433	0.883	0.419	3.138
15316	chr9	75404396	75409155	+	0	NA	intron (NM_015806, intron 1 of 5)	intron (NM_015806, intron 1 of 5)	2584	NM_027418	50772	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	6.019	3.121	1.108	6.480	3.628	2.336	5.979	6.620	5.351	7.219	4.672	3.516	6.044	8.568	5.726	7.109	4.947	7.230	2.086	nan	1.901	1.944	2.311	1.737	7.792
3070	chr11	118939397	118940725	+	0	NA	Intergenic	Intergenic	-28464	NM_001285437	52897	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	3.977	3.672	1.315	3.682	1.818	0.855	5.698	6.261	2.021	3.199	1.394	0.713	4.577	5.319	4.453	5.155	3.424	nan	4.757	nan	2.342	7.062	3.198	1.792	7.647
4488	chr14	18529549	18531461	+	0	NA	Intergenic	Intergenic	-198661	NM_009455	22194	Mm.4429	NM_009455	ENSMUSG00000021774	Ube2e1	UbcM3|Ubce5|ubcM2	ubiquitin-conjugating enzyme E2E 1	protein-coding	3.263	0.427	0.219	1.830	0.922	0.426	2.084	5.493	nan	2.088	0.499	0.363	3.787	3.764	4.245	6.137	3.063	3.792	0.350	0.181	0.211	nan	0.073	0.132	3.361
15087	chr9	53915438	53917776	+	0	NA	intron (NM_177769, intron 10 of 10)	intron (NM_177769, intron 10 of 10)	58694	NM_177769	270162	Mm.259791	NM_177769	ENSMUSG00000041986	Elmod1	4831417L10|AI428506|AI834991	ELMO/CED-12 domain containing 1	protein-coding	3.736	3.749	1.531	7.144	1.438	1.019	0.494	nan	3.776	7.151	1.747	0.450	2.924	4.743	3.972	4.812	2.705	6.139	1.585	1.201	0.926	2.499	0.944	0.830	11.314
6599	chr17	35801122	35805179	+	0	NA	Intergenic	Intergenic	-18563	NM_133662	15937	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	5.869	6.120	1.875	6.300	3.986	1.966	9.160	6.555	4.842	7.503	3.517	3.539	7.148	10.206	8.582	9.832	5.719	6.901	2.165	1.196	1.046	2.262	1.210	1.284	13.142
7359	chr18	68512664	68515298	+	0	NA	Intergenic	Intergenic	-84661	NM_001271716	17200	Mm.426053	NM_008560	ENSMUSG00000045569	Mc2r	ACTH-R|ACTHR|MC2-R	melanocortin 2 receptor	protein-coding	6.618	0.507	0.282	1.502	3.825	3.210	4.016	1.245	4.003	4.215	2.426	0.773	5.558	6.026	1.384	2.256	6.682	3.052	0.715	1.563	0.247	0.357	0.934	0.503	2.800
13515	chr7	108357407	108366920	+	0	NA	Intergenic	Lx6|LINE|L1	-5329	NM_146737	258732	Mm.377662	NM_146737	ENSMUSG00000109631	Olfr494	MOR204-10	olfactory receptor 494	protein-coding	1.695	8.287	6.659	1.784	2.112	1.572	2.288	1.802	1.662	1.531	0.743	1.122	2.102	nan	1.909	nan	2.484	nan	nan	2.430	1.954	1.543	3.853	3.370	1.133
6294	chr17	5006818	5010073	+	0	NA	intron (NM_001085355, intron 1 of 19)	intron (NM_001085355, intron 1 of 19)	13371	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	2.230	2.932	1.842	3.301	1.706	1.126	2.429	2.418	2.261	2.967	1.194	0.756	2.016	3.497	2.845	4.508	nan	2.988	nan	1.784	1.464	2.482	2.108	1.527	2.882
2850	chr11	103117895	103132047	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-8368	NM_001130516	71059	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding	5.667	8.997	3.607	6.027	4.310	2.727	3.830	4.881	nan	5.573	4.793	3.340	3.947	nan	5.092	5.415	3.265	4.994	2.339	2.151	1.888	nan	1.689	1.263	5.453
1967	chr11	8519700	8530445	+	0	NA	intron (NM_001083587, intron 13 of 30)	intron (NM_001083587, intron 13 of 30)	139463	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	3.513	3.423	1.314	2.311	1.470	0.844	2.262	5.075	2.315	2.553	4.154	2.235	2.088	2.583	2.931	3.025	3.336	2.387	2.393	nan	1.764	4.923	3.205	2.582	3.224
657	chr1	136195141	136202459	+	0	NA	intron (NM_001329610, intron 10 of 22)	intron (NM_001329610, intron 10 of 22)	14028	NM_001329610	76422	Mm.159735	NM_001329610		Mroh3	2310006M14Rik	maestro heat-like repeat family member 3	protein-coding	4.919	3.372	1.655	nan	1.461	0.843	1.685	3.078	1.917	2.048	0.830	0.692	1.031	nan	2.137	nan	2.505	2.352	4.530	5.083	3.444	7.255	4.439	3.758	nan
7611	chr19	18720714	18721796	+	0	NA	Intergenic	L1M2|LINE|L1	8019	NM_177640	225995	Mm.28101	NM_177640	ENSMUSG00000047044	D030056L22Rik	-	RIKEN cDNA D030056L22 gene	protein-coding	5.153	2.286	1.821	2.169	3.058	2.395	5.746	4.741	1.666	1.352	1.366	1.349	3.655	3.749	1.956	1.588	6.664	2.365	2.032	1.953	2.108	1.121	2.419	3.946	2.048
11000	chr4	155429110	155439770	+	0	NA	intron (NM_177674, intron 16 of 20)	intron (NM_177674, intron 16 of 20)	-12736	NR_102284	641454	Mm.150322	NR_102283	ENSMUSG00000084803	5830444B04Rik	-	RIKEN cDNA 5830444B04 gene	ncRNA	3.286	0.768	0.418	3.187	2.395	1.196	4.119	4.826	3.818	3.561	6.250	3.365	3.877	4.888	4.834	5.751	2.604	4.785	7.023	1.777	1.901	7.636	2.971	2.418	6.127
5616	chr15	97769635	97770447	+	0	NA	Intergenic	RMER19B|LTR|ERVK	-2375	NM_001177811	223864	Mm.24028	NM_144850	ENSMUSG00000022469	Rapgef3	2310016P22Rik|9330170P05Rik|Epac|Epac1	Rap guanine nucleotide exchange factor (GEF) 3	protein-coding	3.431	0.967	0.132	1.244	0.405	0.105	3.356	5.188	1.799	2.733	1.015	0.421	2.891	3.776	4.046	3.580	2.432	2.551	0.730	0.373	0.100	1.127	0.310	0.345	4.179
14372	chr8	81891579	81899677	+	0	NA	intron (NM_001024617, intron 10 of 24)	intron (NM_001024617, intron 10 of 24)	506958	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	5.204	4.827	1.501	3.985	2.577	1.029	nan	6.678	nan	3.353	3.465	2.780	5.139	4.253	4.473	6.668	3.515	4.282	2.722	2.369	1.038	nan	1.097	0.655	4.455
9412	chr3	85660770	85664027	+	0	NA	intron (NM_172682, intron 11 of 11)	intron (NM_172682, intron 11 of 11)	83811	NM_172682	229488	Mm.119926	NM_172682	ENSMUSG00000051000	Fam160a1	9930021J17Rik	family with sequence similarity 160, member A1	protein-coding	6.653	0.771	0.491	3.162	4.090	1.940	8.951	4.707	3.789	5.367	3.552	1.738	7.687	7.134	4.946	6.289	5.969	6.678	3.900	4.071	2.606	3.821	4.234	2.764	7.077
503	chr1	109244272	109250700	+	0	NA	Intergenic	Intergenic	-735414	NM_001316743	241201	Mm.213407	NM_172853	ENSMUSG00000026312	Cdh7	9330156F07Rik|CDH7L1	cadherin 7, type 2	protein-coding	0.445	nan	0.516	0.309	0.233	0.117	0.316	0.327	0.337	0.244	0.424	0.186	0.156	0.234	0.339	0.702	0.571	0.466	3.831	3.427	1.728	5.416	3.626	2.458	0.244
10099	chr4	55114000	55115008	+	0	NA	Intergenic	Intergenic	166559	NM_172867	242466	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	0.804	nan	0.125	0.692	0.704	0.120	1.026	1.272	0.782	1.134	0.240	0.737	2.559	3.661	0.729	3.200	0.624	1.464	nan	0.595	0.608	0.485	0.522	0.093	0.919
5383	chr15	77643564	77683366	+	0	NA	Intergenic	RLTR6-int|LTR|ERV1	-20179	NM_001143686	328563	Mm.17957	NM_001143686	ENSMUSG00000091694	Apol11b	A330102K04Rik	apolipoprotein L 11b	protein-coding	nan	nan	2.788	nan	5.776	3.625	nan	11.637	6.330	7.170	5.524	3.722	9.061	nan	9.027	8.612	7.611	8.405	3.916	3.130	2.739	nan	2.773	2.261	10.164
7811	chr19	45680697	45682389	+	0	NA	Intergenic	RLTR17B_Mm|LTR|ERVK	-21350	NM_013907	30838	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	0.877	0.817	0.213	nan	0.419	0.217	0.386	0.672	1.067	1.240	0.996	0.640	1.763	1.776	1.355	4.611	3.290	2.198	0.282	0.368	0.138	0.612	0.259		6.499
10825	chr4	141224366	141228298	+	0	NA	Intergenic	MurERV4_19-int|LTR|ERVK	12376	NM_001081174	76166	Mm.271064	NM_001081174	ENSMUSG00000073733	Rsg1	6330545A04Rik|Gm723	REM2 and RAB-like small GTPase 1	protein-coding	nan	1.116	1.411	3.002	7.049	7.678	2.303	3.262	nan	2.709	1.394	1.965	1.694	4.262	2.938	3.437	2.487	nan	1.353	1.525	1.487	1.030	nan	1.788	2.647
1483	chr10	79534122	79541480	+	0	NA	Intergenic	Intergenic	-4014	NM_001302389	50784	Mm.28873	NM_015817	ENSMUSG00000052151	Plpp2	Lpp2|PAP2-G|PAP2-gamma|PAP2c|Ppap2c	phospholipid phosphatase 2	protein-coding	12.241	9.965	2.563	13.475	7.543	4.393	7.764	8.778	7.627	10.599	8.229	4.194	8.167	10.389	9.339	10.366	5.501	11.147	nan	1.742	1.557	4.532	1.172	1.183	14.236
5769	chr16	8783897	8785635	+	0	NA	Intergenic	RSINE1|SINE|B4	-45334	NM_001081400	69053	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	7.640	0.965	0.882	3.648	5.336	4.875	4.175	10.740	3.779	4.423	3.358	2.580	4.670	4.547	2.930	4.727	4.778	4.165	1.935	1.474	1.385	0.846	1.963	2.518	4.009
4069	chr13	45891492	45893999	+	0	NA	intron (NM_001199304, intron 2 of 6)	intron (NM_001199304, intron 2 of 6)	72246	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	2.173	1.207	0.479	nan	1.442	0.704	3.008	2.540	1.729	2.051	1.534	2.314	1.579	2.718	3.008	3.610	1.543	3.124	1.321	nan	0.547	1.892	0.693	0.384	nan
10685	chr4	134405256	134410420	+	0	NA	intron (NM_001285872, intron 4 of 10)	intron (NM_001285872, intron 4 of 10)	4868	NM_001285877	100163	Mm.22116	NM_133880	ENSMUSG00000037366	Pafah2	2310074E22Rik|AI507170	platelet-activating factor acetylhydrolase 2	protein-coding	nan	4.909	1.472	5.438	2.683	2.133	3.413	3.444	nan	7.433	2.238	2.109	3.703	4.511	4.152	5.460	2.590	4.553	6.490	1.867	3.240	8.201	2.836	5.199	7.309
10667	chr4	133861605	133863589	+	0	NA	intron (NM_001285505, intron 13 of 21)	intron (NM_001285505, intron 13 of 21)	12134	NM_001285506	20111	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	nan	0.785	0.462	1.695	1.885	0.812	1.382	2.279	nan	1.321	0.621	0.253	1.931	4.167	1.701	1.984	1.777	nan	1.033	1.031	1.114	0.885	nan	1.164	1.255
11522	chr5	105946619	105958113	+	0	NA	Intergenic	Intergenic	75798	NM_018759	54367	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	7.356	5.123	2.268	5.806	5.273	3.349	10.644	4.739	6.750	8.999	1.425	1.629	8.551	7.725	8.628	8.689	6.125	8.270	nan	1.801	1.833	2.433	2.073	2.066	7.803
9514	chr3	94728835	94730403	+	0	NA	Intergenic	L1Md_T|LINE|L1	36046	NM_019414	20342	Mm.225405	NM_019414	ENSMUSG00000068877	Selenbp2	AP56|Lpsb2	selenium binding protein 2	protein-coding	1.742	0.448	0.718	2.577	4.107	3.409	3.626	2.484	2.316	2.510	nan	1.428	2.211	5.024	2.197	nan	2.679	1.885	0.747	1.167	1.076	0.570	0.865	1.085	1.665
1996	chr11	19819280	19821095	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-104255	NM_033523	114716	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	4.761	8.825	2.515	8.355	1.776	1.337	5.774	5.983	4.891	7.651	5.536	3.623	6.452	5.605	6.846	8.445	5.163	5.908	3.543	0.961	0.994	3.581	1.693	1.512	8.294
10386	chr4	114101644	114103140	+	0	NA	Intergenic	L1VL4|LINE|L1	-60992	NM_177669	230623	Mm.124482	NM_177669	ENSMUSG00000057977	Skint11	A630098G03Rik|Gm569	selection and upkeep of intraepithelial T cells 11	protein-coding	0.567	0.426	0.303	0.221	0.169	0.084	0.908	0.833	0.767	0.734	0.161	0.105	1.336	2.768	1.371	1.652	1.111	0.538	0.759	0.278	0.359	0.529	0.234	0.578	1.128
8965	chr2	164372969	164377788	+	0	NA	Intergenic	Intergenic	-18871	NM_011414	20568	Mm.371583	NM_011414	ENSMUSG00000017002	Slpi	-	secretory leukocyte peptidase inhibitor	protein-coding	5.477	0.623	0.434	4.807	5.738	4.595	8.129	9.395	4.481	4.754	1.116	2.632	9.696	11.369	7.220	9.673	8.269	6.624	2.466	1.009	1.114	2.377	1.929	1.537	7.946
12912	chr7	4931277	4932677	+	0	NA	intron (NM_173008, intron 8 of 13)	MYSERV16_I-int|LTR|ERVK	6133	NM_173008	269855	Mm.44190	NM_173008	ENSMUSG00000035279	Ssc5d	A430110N23Rik|S5D-SRCRB	scavenger receptor cysteine rich family, 5 domains	protein-coding	1.238	0.529	0.484	1.210	1.200	0.348	1.092	1.293	1.285	1.360	0.231	0.207	2.182	4.029	1.275	2.189	1.989	1.735	0.524	0.383	0.564	0.297	0.396	0.242	1.698
15489	chr9	107609590	107612709	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	-1908	NM_001291539	20347	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	7.121	2.670	0.600	7.286	1.685	1.085	7.603	6.635	3.043	6.549	9.089	3.438	3.788	5.095	6.434	7.342	2.963	5.156	3.839	2.017	2.618	5.799	2.486	2.868	14.747
11357	chr5	74583994	74586824	+	0	NA	intron (NM_024183, intron 12 of 16)	intron (NM_024183, intron 12 of 16)	49927	NM_001159574	66899	Mm.272468	NM_024183	ENSMUSG00000029227	Fip1l1	1300019H17Rik|Rje	FIP1 like 1 (S. cerevisiae)	protein-coding	2.952	0.732	0.395	3.425	2.112	1.220	3.623	1.274	3.431	2.817	0.745	0.712	1.928	4.733	1.972	4.866	3.899	3.464	0.677	0.519	0.450	0.721	0.415	0.397	2.739
4695	chr14	56223033	56224422	+	0	NA	Intergenic	MTA_Mm-int|LTR|ERVL-MaLR	10930	NM_010371	14940	Mm.14465	NM_010371	ENSMUSG00000079186	Gzmc	AI323531|B10|CCP2|Ctla-5|Ctla5	granzyme C	protein-coding	9.253	17.099	7.436	11.440	7.090	3.359	7.370	8.752	6.914	7.570	4.492	3.854	7.203	8.695	9.103	9.748	6.004	8.724	9.080	2.613	3.598	5.021	5.915	3.873	12.827
9436	chr3	88083410	88087553	+	0	NA	intron (NM_001033484, intron 2 of 37)	B1_Mur3|SINE|Alu	3430	NM_001033484	404710	Mm.331133	NM_001033484	ENSMUSG00000028068	Iqgap3	AI593484|D030034H08	IQ motif containing GTPase activating protein 3	protein-coding	3.159	0.459	0.487	2.319	1.891	1.649	2.312	1.138	1.666	1.853	0.557	0.387	4.587	6.715	2.972	nan	1.941	4.004	nan	0.484	0.683	0.486	0.443	0.573	2.590
14558	chr8	108800277	108805403	+	0	NA	intron (NM_007496, intron 3 of 9)	intron (NM_007496, intron 3 of 9)	88196	NM_007496	11906	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	3.242	0.877	0.434	1.071	1.163	0.651	2.939	8.324	3.444	2.380	1.959	3.722	4.297	4.493	4.701	5.715	2.809	4.318	4.185	2.206	1.176	5.162	3.294	2.196	3.298
5781	chr16	10450001	10456598	+	0	NA	Intergenic	Intergenic	-5949	NM_001013778	383103	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	8.648	2.701	1.510	5.613	3.340	2.183	7.483	7.237	6.655	6.786	2.695	1.750	10.609	8.005	9.390	10.778	5.966	8.426	2.019	1.318	1.057	2.529	1.086	0.829	10.106
6143	chr16	58069708	58071139	+	0	NA	Intergenic	L1_Mus2|LINE|L1	-315686	NM_007739	12837	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding	0.078	0.164	0.180	0.248	0.134		0.467	0.207	0.220	0.063	0.299	0.077	0.108	0.072	0.083	nan	0.243	0.267	1.906	1.609	1.739	1.136	4.272	7.297	0.132
10658	chr4	133616736	133618111	+	0	NA	intron (NM_001017968, intron 2 of 7)	ID_B1|SINE|B4	-15255	NM_018754	55948	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	nan	2.930	0.391	1.600	1.081	0.823	3.052	4.832	nan	2.229	3.027	1.179	2.637	3.271	2.813	2.940	1.842	nan	0.836	0.681	0.242	2.825	3.164	1.318	2.791
5285	chr15	72450947	72453757	+	0	NA	Intergenic	Intergenic	93927	NM_001033876	223604	Mm.386856	NM_001033876	ENSMUSG00000036760	Kcnk9	Task3	potassium channel, subfamily K, member 9	protein-coding	nan	0.525	0.739	1.208	1.227	0.834	4.648	3.594	1.061	1.152	0.446	0.463	4.478	4.514	4.572	2.768	3.857	3.180	3.548	1.822	1.514	2.372	1.286	0.725	1.937
6956	chr17	88007936	88014107	+	0	NA	exon (NM_001081034, exon 7 of 23)	exon (NM_001081034, exon 7 of 23)	35971	NM_010830	17688	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	3.440	1.234	0.770	2.023	1.417	1.119	5.557	4.538	nan	2.626	5.220	3.759	2.968	3.960	5.490	5.444	4.688	2.922	5.941	3.899	2.970	5.840	5.043	3.646	5.224
10651	chr4	133186848	133189367	+	0	NA	intron (NM_153423, intron 4 of 8)	B1_Mus2|SINE|Alu	-7548	NR_105984	102466215		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	10.770	17.993	6.013	13.543	10.772	5.409	11.032	10.867	4.952	12.375	6.601	3.578	6.198	13.615	9.856	10.679	5.933	10.142	4.322	5.501	4.099	6.439	nan	4.298	17.461
3253	chr12	29382681	29385909	+	0	NA	Intergenic	L1Md_T|LINE|L1	-144089	NM_001093775	17933	Mm.253067	NM_008666	ENSMUSG00000061911	Myt1l	2900046C06Rik|2900093J19Rik|C630034G21Rik|Nztf1|Pmng1|Png-1|mKIAA1106	myelin transcription factor 1-like	protein-coding	4.421	1.679	0.440	2.810	1.281	0.416	4.699	4.344	2.677	3.663	0.626	1.057	5.816	5.312	5.750	5.765	2.746	5.577	3.408	1.193	0.909	4.056	0.898	0.531	8.559
11583	chr5	114292116	114294603	+	0	NA	Intergenic	Intergenic	-19598	NM_148935	116810	Mm.17709	NM_148935	ENSMUSG00000042002	Foxn4	-	forkhead box N4	protein-coding	2.930	3.478	1.368	3.372	2.080	0.791	1.126	0.912	1.518	1.628	6.870	2.076	0.466	0.912	1.215	2.230	1.471	2.306	nan	nan	0.852	0.651	nan	0.536	2.288
11418	chr5	91249106	91250538	+	0	NA	Intergenic	L1Md_F2|LINE|L1	33254	NR_040428	100503265	Mm.125059	NR_040428	ENSMUSG00000107198	Gm19619	-	predicted gene, 19619	ncRNA	2.514	1.194	0.199	1.954	0.934	0.615	3.270	2.291	3.448	3.497	1.239	1.922	4.864	4.056	3.561	4.417	3.242	4.170	0.767	0.254	0.086	0.500	0.625	0.131	1.352
1114	chr10	17580342	17581487	+	0	NA	Intergenic	L1MC1|LINE|L1	-142314	NM_010828	17684	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	2.245	0.598	0.646	0.544	0.392	0.194	0.293	1.021	nan	0.400	1.772	1.322	0.398	3.575	0.711	0.733	1.067	0.953	1.026	1.319	0.627	1.385	0.604	0.521	nan
2389	chr11	69813511	69815434	+	0	NA	Intergenic	Intergenic	3968	NM_175368	108803	Mm.73263	NM_175368	ENSMUSG00000044084	4933402P03Rik	-	RIKEN cDNA 4933402P03 gene	protein-coding	6.425	8.189	3.065	6.431	4.079	2.703	5.268	5.409	3.280	7.690	3.930	2.410	4.515	8.224	5.989	7.092	4.945	5.438	3.680	4.130	2.896	4.621	6.147	4.052	8.291
3657	chr12	103348589	103352856	+	0	NA	intron (NM_023049, intron 1 of 9)	intron (NM_023049, intron 1 of 9)	5279	NM_023049	65256	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	6.364	0.542	0.305	3.662	2.116	1.207	4.425	2.771	nan	5.819	0.432	0.417	6.608	6.750	7.047	10.555	7.281	5.293	3.967	1.497	0.873	6.265	1.339	1.354	10.871
4497	chr14	20952683	20955713	+	0	NA	intron (NM_009502, intron 1 of 20)	L1Md_F2|LINE|L1	24765	NM_009502	22330	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	4.072	0.584	0.558	2.166	4.628	2.364	4.526	6.244	nan	3.587	2.226	2.483	3.133	7.112	4.770	5.528	3.340	3.638	0.520	0.535	0.591	nan	0.490	0.344	6.105
6452	chr17	27454409	27456274	+	0	NA	intron (NM_001013385, intron 2 of 8)	intron (NM_001013385, intron 2 of 8)	48192	NM_001013385	268934	Mm.358940	NM_001013385	ENSMUSG00000063239	Grm4	Gprc1d|mGluR4	glutamate receptor, metabotropic 4	protein-coding	1.467	1.147	0.341	1.329	0.609	0.324	1.334	2.078	0.620	1.419	0.501	0.478	1.786	3.179	3.045	5.839	3.698	3.135	1.239	0.681	0.394	2.030	0.856	0.553	6.286
8019	chr2	25140952	25148454	+	0	NA	Intergenic	Intergenic	-36055	NM_025980	67122	Mm.46539	NM_025980	ENSMUSG00000078202	Nrarp	2700054M22Rik	Notch-regulated ankyrin repeat protein	protein-coding	3.619	0.813	0.243	4.673	1.152	0.639	4.201	10.785	3.873	3.500	9.065	4.535	6.069	3.766	6.224	8.195	5.221	7.921	1.166	0.569	0.743	2.872	0.749	0.654	9.161
11044	chr5	20644871	20649695	+	0	NA	intron (NM_001170746, intron 20 of 22)	intron (NM_001170746, intron 20 of 22)	234841	NM_172992	68770	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	4.014	1.832	1.035	3.316	4.315	2.845	2.608	2.526	3.448	3.630	1.365	1.118	3.693	5.967	4.366	4.414	4.308	3.936	1.025	1.422	1.036	1.354	1.098	0.663	3.977
122	chr1	39369852	39371071	+	0	NA	intron (NM_001252218, intron 2 of 3)	intron (NM_001252218, intron 2 of 3)	2610	NM_001252218	114641	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	6.909	0.685	0.810	1.749	2.433	0.811	3.513	2.981	1.772	3.301	1.033	1.239	4.205	4.108	3.794	7.773	6.705	4.572	1.683	0.977	0.812	0.705	1.166	0.824	5.763
5783	chr16	10472888	10477482	+	0	NA	Intergenic	Intergenic	-4887	NM_001302619	12265	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	13.366	3.506	2.295	4.624	4.571	1.645	11.317	7.098	6.833	8.760	1.802	1.085	12.436	11.542	9.193	12.769	10.616	8.494	0.963	1.061	0.528	0.444	0.786	0.541	12.195
14292	chr8	72678635	72688344	+	0	NA	intron (NM_176940, intron 10 of 18)	intron (NM_176940, intron 10 of 18)	36778	NM_176940	319555	Mm.212927	NM_176940	ENSMUSG00000048148	Nwd1	A230063L24Rik	NACHT and WD repeat domain containing 1	protein-coding	0.453	11.879	5.764	0.860	0.525	0.298	0.407	0.655	0.454	0.610	0.371	0.343	0.278	0.389	0.677	0.791	0.613	0.658	nan	0.927	0.929	1.662	0.722	0.946	nan
9589	chr3	98217853	98220061	+	0	NA	Intergenic	Intergenic	-3199	NM_026328	67709	Mm.46306	NM_026328	ENSMUSG00000027876	Reg4	2010002L15Rik|GISP|RELP	regenerating islet-derived family, member 4	protein-coding	2.799	1.612	1.287	3.878	1.423	0.883	1.544	1.721	2.237	1.375	nan	0.603	0.828	2.572	1.678	nan	1.134	2.255	0.800	0.991	0.883	0.918	0.876	0.734	1.320
15056	chr9	48557868	48561075	+	0	NA	Intergenic	Lx4B|LINE|L1	45652	NM_001311062	18113	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	2.558	1.831	1.093	5.692	1.809	1.245	0.981	2.579	2.813	2.962	1.029	0.596	2.388	4.104	nan	2.852	1.690	4.290	0.833	0.900	0.878	2.255	1.004	0.767	nan
11409	chr5	90793411	90797259	+	0	NA	intron (NM_011339, intron 2 of 3)	intron (NM_011339, intron 2 of 3)	801	NM_011339	20309	Mm.64326	NM_011339	ENSMUSG00000029375	Cxcl15	Il8|Scyb15|lungkine|weche	chemokine (C-X-C motif) ligand 15	protein-coding	10.365	10.722	4.839	7.861	7.396	5.154	10.458	8.431	4.788	12.092	7.906	3.606	6.765	11.298	6.998	8.586	8.133	6.791	5.056	4.485	5.591	4.459	5.712	6.240	11.747
878	chr1	173196150	173203118	+	0	NA	Intergenic	Intergenic	-3724	NM_001001809	258880	Mm.377732	NM_001001809	ENSMUSG00000046643	Olfr218	MOR267-3|Olfr1405-ps1|Olfr218-ps1	olfactory receptor 218	protein-coding	9.715	2.741	1.682	4.769	4.995	2.384	6.556	7.445	5.085	7.401	6.616	3.511	6.577	8.628	6.117	8.285	6.729	6.465	1.912	2.239	1.242	2.269	1.765	1.096	9.205
5421	chr15	79151253	79159590	+	0	NA	3' UTR (NM_011437, exon 4 of 4)	3' UTR (NM_011437, exon 4 of 4)	9069	NM_011437	20665	Mm.276739	NM_011437	ENSMUSG00000033006	Sox10	Dom|Sox21|gt	SRY (sex determining region Y)-box 10	protein-coding	11.627	nan	2.782	7.726	7.687	4.365	15.207	18.667	6.510	8.867	6.990	4.820	12.123	13.021	10.700	10.608	12.234	9.191	5.905	5.791	3.854	nan	7.859	5.839	12.236
2277	chr11	60349036	60353165	+	0	NA	intron (NM_153080, intron 1 of 14)	B1_Mus2|SINE|Alu	1805	NM_153080	216810	Mm.218875	NM_153080	ENSMUSG00000000538	Tom1l2	2900016I08Rik|A730055F12Rik|AU042072|Srebf1	target of myb1-like 2 (chicken)	protein-coding	9.326	12.518	3.187	10.633	6.283	3.507	8.704	8.850	5.947	12.428	7.901	4.323	7.887	10.990	9.864	11.010	5.762	9.020	7.458	4.066	3.680	7.873	4.033	3.516	13.204
2353	chr11	68747665	68748579	+	0	NA	intron (NM_175260, intron 5 of 40)	L1MB7|LINE|L1	56207	NM_175260	77579	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	1.847	1.002	0.154	0.638	0.702	0.361	1.746	0.607	1.468	2.059	3.218	0.712	2.303	4.833	2.517	4.082	1.412	2.001	1.646	0.768	0.202	1.517	nan	1.090	2.579
12002	chr5	151855143	151860252	+	0	NA	Intergenic	Intergenic	-206489	NM_027009	69263	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	8.660	1.232	0.598	7.457	4.869	2.398	7.292	4.024	6.486	6.911	2.572	1.321	6.928	8.590	7.540	8.176	5.454	10.050	1.115	1.085	0.744	1.255	0.919	0.681	7.921
3198	chr12	16389673	16392132	+	0	NA	Intergenic	Intergenic	198868	NM_015763	14245	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	4631420P06|Kiaa0188|Lipin1|fld|mKIAA0188	lipin 1	protein-coding	0.758	9.616	9.837	0.650	0.582	0.397	0.241	0.278	0.395	0.338	0.240	0.224	0.090	0.256	0.337	0.433	0.574	0.325	0.938	2.343	2.097	0.912	0.918	0.419	0.335
3215	chr12	17743591	17759143	+	0	NA	intron (NM_016677, intron 1 of 3)	intron (NM_016677, intron 1 of 3)	60553	NM_016677	53602	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	6.872	1.723	0.642	5.121	3.655	1.877	7.462	5.792	4.705	5.437	1.656	1.654	7.443	8.439	7.109	7.005	4.171	7.076	1.135	0.844	0.636	1.491	1.164	0.646	8.378
5834	chr16	17190326	17191424	+	0	NA	intron (NM_009456, intron 1 of 3)	intron (NM_009456, intron 1 of 3)	10617	NM_009456	22195	Mm.3074	NM_009456	ENSMUSG00000038965	Ube2l3	C79827|UbcM4|Ubce7	ubiquitin-conjugating enzyme E2L 3	protein-coding	4.609	0.759	0.379	2.112	2.058	1.327	1.800	5.990	1.922	2.341	1.241	1.049	2.864	3.361	1.902	3.348	2.281	3.811	1.462	0.699	0.828	0.543	1.074	0.977	2.561
14551	chr8	108652512	108653728	+	0	NA	Intergenic	Intergenic	-61524	NM_007496	11906	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	1.806	0.706	0.337	1.684	1.006	0.587	1.800	3.935	2.133	2.031	1.504	0.963	2.854	4.207	3.581	4.173	2.399	4.520	1.106	0.352	0.143	2.219	0.072	0.119	2.463
8464	chr2	93289922	93294461	+	0	NA	intron (NM_183180, intron 2 of 9)	L2a|LINE|L2	42296	NM_183180	241556	Mm.274159	NM_183180	ENSMUSG00000027217	Tspan18	2610042G18Rik|6720430O15|BB226562	tetraspanin 18	protein-coding	2.926	8.140	1.919	3.298	1.022	0.485	1.079	2.879	0.973	1.359	1.545	1.190	1.271	3.013	1.636	3.090	1.257	2.691	0.801	0.795	0.610	0.910	0.462	0.315	2.541
6687	chr17	47196558	47198005	+	0	NA	intron (NM_001097623, intron 3 of 19)	intron (NM_001097623, intron 3 of 19)	-32949	NM_172622	224829	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	3.551	2.258	1.871	3.518	3.488	2.986	5.893	6.540	1.313	1.796	1.134	1.063	2.758	4.866	4.015	5.343	4.686	2.925	1.450	3.577	4.154	2.860	2.107	2.046	5.249
2159	chr11	51244494	51245900	+	0	NA	Intergenic	ORR1A1|LTR|ERVL-MaLR	17754	NM_177567	193286	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	3.083	1.154	0.643	3.671	1.126	0.363	0.891	1.332	3.383	4.183	5.572	3.020	4.875	3.740	3.404	2.925	3.352	4.086	nan	0.141	0.250	nan	nan	0.273	4.037
3059	chr11	118145706	118152542	+	0	NA	Intergenic	Intergenic	-19905	NM_001167746	69926	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	4.438	nan	1.533	4.817	5.041	2.611	nan	3.620	2.945	5.021	2.536	2.210	4.570	6.967	5.272	7.120	4.727	5.081	2.657	nan	1.715	2.515	2.718	1.650	6.154
6161	chr16	77643951	77645104	+	0	NA	Intergenic	Intergenic	-1746	NR_029540	723952		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA	6.262	1.376	1.025	5.405	6.020	2.893	4.850	7.991	2.497	2.131	1.588	1.961	4.134	4.881	4.192	4.797	6.218	3.619	nan	5.064	2.094	6.263	2.267	2.016	5.213
8031	chr2	26299145	26302519	+	0	NA	Intergenic	Intergenic	-6275	NM_177841	329366	Mm.77712	NM_177841	ENSMUSG00000048038	Ccdc187	4932418E24Rik	coiled-coil domain containing 187	protein-coding	8.478	6.596	1.749	9.661	3.918	1.790	7.948	11.841	nan	7.192	5.246	3.628	7.798	9.223	9.145	13.243	7.613	8.369	4.330	2.224	1.648	6.216	2.017	1.947	13.326
12652	chr6	119335792	119339772	+	0	NA	intron (NM_001347427, intron 26 of 36)	intron (NM_001347427, intron 26 of 36)	-7016	NM_172492	211187	Mm.121498	NM_172492	ENSMUSG00000055003	Lrtm2	A230084J22|AI841794	leucine-rich repeats and transmembrane domains 2	protein-coding	7.684	5.842	1.847	8.113	5.277	3.576	7.210	9.336	6.300	9.085	3.378	4.446	7.732	9.232	8.281	9.476	6.855	7.463	3.555	2.321	1.975	3.876	nan	3.958	7.312
13726	chr7	132632436	132640808	+	0	NA	intron (NM_029609, intron 3 of 6)	intron (NM_029609, intron 3 of 6)	25979	NM_029609	76429	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	6.267	6.927	4.265	5.741	5.476	3.546	5.779	6.461	6.313	7.176	3.635	3.299	6.731	7.195	5.306	5.766	5.403	6.644	2.233	2.519	1.791	2.749	2.798	2.215	6.170
5243	chr15	61362649	61368343	+	0	NA	Intergenic	Intergenic	408955	NR_040350	432956	Mm.404918	NR_040350		D030024E09Rik	-	RIKEN cDNA D030024E09 gene	ncRNA	7.672	0.635	0.482	3.155	3.997	2.068	7.389	nan	4.295	nan	8.113	4.785	6.600	6.776	5.487	nan	3.474	8.087	1.040	0.730	0.552	0.726	0.780	0.584	3.618
14378	chr8	83301380	83307302	+	0	NA	Intergenic	Intergenic	13993	NM_009463	22227	Mm.4177	NM_009463	ENSMUSG00000031710	Ucp1	AI385626|Slc25a7|Ucp	uncoupling protein 1 (mitochondrial, proton carrier)	protein-coding	7.586	0.697	0.787	2.336	2.336	2.592	5.641	7.801	4.131	3.586	1.189	1.092	6.930	6.422	6.802	6.205	7.888	4.444	3.063	2.736	3.285	3.316	3.867	3.787	5.476
11564	chr5	112642853	112646295	+	0	NA	Intergenic	Intergenic	-54578	NR_045397	67325	Mm.490791	NR_045396	ENSMUSG00000097962	1700034G24Rik	-	RIKEN cDNA 1700034G24 gene	ncRNA	0.766	0.764	0.266	0.807	0.239	0.143	nan	0.339	0.435	0.709	0.547	0.183	0.242	0.538	0.401	0.602	0.345	0.948	3.740	1.366	1.284	5.569	3.227	2.096	0.839
9393	chr3	83842745	83844970	+	0	NA	Intergenic	Intergenic	-2249	NM_011905	24088	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	5.488	20.670	5.378	8.365	1.974	1.023	9.316	4.775	3.660	10.522	5.723	2.604	7.765	7.758	9.002	9.605	5.955	8.917	nan	2.571	2.234	8.919	3.111	5.186	14.628
12192	chr6	39730436	39732465	+	0	NA	Intergenic	ORR1C2|LTR|ERVL-MaLR	-5987	NM_139294	109880	Mm.245513	NM_139294	ENSMUSG00000002413	Braf	9930012E13Rik|AA120551|AA387315|AA473386|B-raf|Braf-2|Braf2|C230098H17|C87398|D6Ertd631e	Braf transforming gene	protein-coding	5.389	2.684	1.684	4.962	3.153	2.306	4.344	6.261	4.545	4.247	10.871	4.989	2.854	5.342	5.116	5.447	5.008	3.696	nan	1.926	1.442	nan	1.824	1.171	3.949
4834	chr14	73642857	73645646	+	0	NA	Intergenic	B4A|SINE|B4	91465	NM_011506	20916	Mm.38951	NM_011506	ENSMUSG00000022110	Sucla2	4930547K18Rik|A-SCS	succinate-Coenzyme A ligase, ADP-forming, beta subunit	protein-coding	4.674	1.690	1.879	2.996	5.204	2.715	2.842	3.202	2.781	3.291	2.909	2.351	4.038	5.085	2.163	2.799	2.570	3.349	1.037	1.783	1.720	0.500	1.106	1.591	1.812
4725	chr14	60104383	60106446	+	0	NA	Intergenic	Intergenic	-18580	NM_015803	50769	Mm.319599	NM_015803	ENSMUSG00000021983	Atp8a2	AI415030|Atpc1b|agil|wl	ATPase, aminophospholipid transporter-like, class I, type 8A, member 2	protein-coding	2.203	nan	0.689	1.749	1.192	0.761	2.924	nan	4.058	4.506	0.708	1.095	3.873	4.607	5.092	4.368	3.248	4.767	0.926	0.988	0.279	1.237	0.854	0.461	3.179
4538	chr14	25468036	25477399	+	0	NA	intron (NM_001310666, intron 1 of 23)	intron (NM_001310666, intron 1 of 23)	13532	NM_183208	328365	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|ENSMUSG00000072684|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.325	0.502	0.460	0.464	0.122	0.026	0.240	0.347	0.253	0.273	0.244	0.131	0.104	0.163	0.318	nan	nan	nan	3.678	1.111	1.107	5.983	1.943	1.560	0.459
12275	chr6	58590211	58591170	+	0	NA	Intergenic	Lx2|LINE|L1	-5982	NM_011920	26357	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP-binding cassette, sub-family G (WHITE), member 2	protein-coding	3.939	2.987	1.458	4.832	2.863	2.555	6.994	6.108	2.184	2.815	1.293	1.023	1.487	3.965	5.360	4.054	5.826	3.549	nan	2.168	1.905	1.639	1.476	1.038	5.212
11395	chr5	89119342	89120706	+	0	NA	intron (NM_001197147, intron 7 of 25)	RLTR17B_Mm|LTR|ERVK	232764	NM_018760	54403	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	3.025	0.603	0.503	2.240	1.245	1.567	5.119	5.179	2.060	1.620	1.392	1.161	1.868	4.327	6.045	4.649	4.966	2.732	6.348	4.082	1.814	4.064	6.885	5.050	2.375
4062	chr13	45725317	45727048	+	0	NA	intron (NM_001199305, intron 5 of 7)	intron (NM_001199305, intron 5 of 7)	218738	NM_025508	66355	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	3.560	0.677	0.526	3.435	3.896	3.468	2.282	1.966	3.492	3.448	0.865	0.718	2.153	5.209	2.958	3.541	1.427	5.191	2.052	nan	1.063	1.090	1.514	1.345	4.494
12588	chr6	113393812	113394856	+	0	NA	intron (NM_001142732, intron 2 of 5)	ID4_|SINE|ID	1837	NM_133923	101100	Mm.388573	NM_133923	ENSMUSG00000030276	Ttll3	4833441J24Rik|AI450050	tubulin tyrosine ligase-like family, member 3	protein-coding	2.224	0.849	0.485	0.808	1.187	1.041	6.252	6.527	1.330	1.600	1.069	1.756	4.377	nan	4.550	5.992	5.183	1.857	0.953	0.598	0.470	0.503	nan	0.628	1.537
6096	chr16	45786962	45794123	+	0	NA	intron (NM_001252442, intron 5 of 18)	intron (NM_001252442, intron 5 of 18)	-47587	NM_172511	213012	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	4.998	0.588	0.403	4.533	4.924	3.285	3.093	5.005	4.410	4.682	0.949	0.721	4.891	7.752	4.639	5.812	3.303	6.338	3.389	2.539	1.822	3.911	1.828	1.302	3.943
7629	chr19	21402542	21405676	+	0	NA	intron (NM_010266, intron 10 of 13)	MIRb|SINE|MIR	68552	NM_010266	14544	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0.853	0.550	0.543	0.957	0.542	0.485	0.567	2.181	0.623	0.629	0.607	0.522	0.650	0.649	0.677	0.737	0.687	nan	3.319	3.247	2.143	4.970	6.490	5.641	1.045
3591	chr12	87331260	87333602	+	0	NA	intron (NM_011479, intron 9 of 11)	intron (NM_011479, intron 9 of 11)	-32726	NM_001290302	217738	Mm.219363	NM_001290302	ENSMUSG00000050671	Ism2	Gm264|Thsd3	isthmin 2	protein-coding	2.866	5.275	3.321	2.284	0.547	0.353	0.871	0.899	1.862	2.157	1.519	1.085	1.510	1.047	1.500	1.908	2.083	2.780	6.963	3.416	1.652	5.583	2.807	1.885	1.937
9566	chr3	96530994	96534265	+	0	NA	Intergenic	B3|SINE|B2	7444	NM_027126	69585	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	7.978	8.898	3.108	6.906	6.072	3.062	7.156	6.510	5.006	6.778	nan	3.129	6.977	8.470	7.093	7.844	6.431	7.713	4.482	4.244	2.753	4.630	4.450	3.186	9.660
15106	chr9	56784744	56787204	+	0	NA	Intergenic	Intergenic	65989	NM_198673	382075	Mm.335177	NM_198673	ENSMUSG00000045620	Odf3l1	BC049697|Gm1116	outer dense fiber of sperm tails 3-like 1	protein-coding	7.978	8.293	2.865	8.580	4.464	2.571	7.402	7.134	6.280	7.160	4.157	3.428	9.340	7.292	7.705	8.860	5.319	7.458	3.966	3.382	2.837	5.479	3.132	3.267	10.578
11807	chr5	136431987	136434026	+	0	NA	intron (NM_001291239, intron 2 of 22)	intron (NM_001291239, intron 2 of 22)	-57203	NR_030500	723975		NR_030500	ENSMUSG00000106479	Mir721	Mirn721|miRY|mir-721|mmu-mir-721	microRNA 721	ncRNA	7.566	9.785	6.141	4.896	5.158	3.996	7.396	5.312	5.563	5.333	4.795	4.117	4.357	7.844	6.602	6.986	7.449	5.292	4.771	3.661	3.463	4.020	nan	4.135	5.969
14070	chr8	23703145	23705702	+	0	NA	intron (NM_001277239, intron 1 of 7)	L1_Rod|LINE|L1	34762	NM_177086	320158	Mm.121274	NM_177086	ENSMUSG00000037492	Zmat4	9630048M01Rik	zinc finger, matrin type 4	protein-coding	8.242	9.144	2.257	9.826	3.497	2.719	5.832	9.363	5.570	11.239	6.114	3.887	8.826	8.226	9.753	10.919	6.790	9.735	5.844	3.825	3.679	10.791	2.958	3.682	12.987
10066	chr4	47330509	47333351	+	0	NA	Intergenic	LTR33|LTR|ERVL	-21292	NM_001312868	21812	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	5.787	2.898	0.665	2.325	1.912	0.564	1.595	2.408	2.814	3.312	2.141	0.986	2.372	3.272	2.960	3.891	2.431	nan	0.948	0.773	0.709	nan	0.537	0.167	5.000
13982	chr8	10500761	10502736	+	0	NA	intron (NM_001319151, intron 24 of 34)	intron (NM_001319151, intron 24 of 34)	347837	NM_001319151	244281	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	4.182	0.409	0.409	1.395	2.434	0.974	1.487	3.090	2.383	2.840	2.902	0.724	3.591	6.439	2.568	4.024	3.875	2.350	0.681	0.893	0.712	0.796	1.190	1.025	2.049
1632	chr10	94577376	94581780	+	0	NA	intron (NM_172051, intron 2 of 3)	intron (NM_172051, intron 2 of 3)	3315	NM_177026	319880	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	AW488095|C630016B22Rik|C88213|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	6.293	1.595	0.791	2.224	4.024	2.663	2.462	2.474	2.651	3.294	nan	0.507	2.471	4.100	3.298	2.251	2.561	4.145	nan	1.172	0.992	nan	0.809	0.631	5.694
8135	chr2	32302354	32312355	+	0	NA	3' UTR (NM_133852, exon 27 of 27)	3' UTR (NM_133852, exon 27 of 27)	-10911	NR_128563	104795665		NR_128563	ENSMUSG00000092765	Gm23363	Mir3154|mir-3154|mmu-mir-3154	predicted gene, 23363	ncRNA	6.717	5.642	1.989	6.800	4.253	2.728	4.350	7.472	nan	6.014	3.028	2.796	5.265	6.082	5.950	8.840	5.250	7.476	2.602	2.290	1.534	2.768	2.174	1.914	7.836
3352	chr12	57459050	57460443	+	0	NA	Intergenic	Intergenic	86375	NM_008259	15375	Mm.4578	NM_008259	ENSMUSG00000035451	Foxa1	Hnf-3a|Hnf3a|Tcf-3a|Tcf3a	forkhead box A1	protein-coding	4.744	nan	1.082	2.633	7.560	6.947	3.818	1.357	3.342	3.257	1.615	0.812	4.359	3.945	2.056	2.794	5.599	4.783	0.817	0.773	1.171	0.642	1.365	1.205	3.609
14648	chr8	119890723	119895172	+	0	NA	Intergenic	RLTR4_MM-int|LTR|ERV1	-17413	NM_009462	22224	Mm.256910	NM_009462	ENSMUSG00000031826	Usp10	2610014N07Rik|UBPO|Uchrp|mKIAA0190	ubiquitin specific peptidase 10	protein-coding	3.879	2.789	1.160	4.075	3.567	2.349	6.080	6.652	3.780	4.417	1.803	1.371	6.115	4.882	6.553	6.993	3.506	5.416	1.581	1.163	1.231	2.826	1.615	1.009	6.836
667	chr1	136697042	136702367	+	0	NA	intron (NR_037986, intron 1 of 4)	intron (NR_037986, intron 1 of 4)	3493	NR_037986	100503474	Mm.428276	NR_037986		Platr22	Gm16880	pluripotency associated transcript 22	ncRNA	10.975	2.303	1.199	6.675	5.661	2.551	4.836	5.301	5.516	7.206	3.572	2.019	5.401	8.569	5.906	8.282	5.403	6.704	1.210	1.356	0.914	1.030	0.915	0.537	6.819
11021	chr5	15438979	15441847	+	0	NA	Intergenic	Intergenic	88809	NM_001310449	100861755	Mm.382859	NM_001310449	ENSMUSG00000106445	Gm21190	-	predicted gene, 21190	protein-coding	0.660	0.925	0.092	2.436	0.498	0.256	0.331	0.531	0.687	1.356	0.457	0.249	0.271	0.446	0.623	0.826	0.321	0.678	10.613	3.040	3.520	10.232	5.530	7.960	0.960
1280	chr10	51922176	51925468	+	0	NA	Intergenic	Intergenic	-98680	NM_001300957	215031	Mm.87237	NM_153786	ENSMUSG00000049641	Vgll2	C130057C21Rik|VITO-1|Vito1|vgl-2	vestigial like family member 2	protein-coding	6.110	nan	0.458	2.801	7.424	6.823	8.699	4.233	4.865	4.440	0.436	0.945	6.415	8.429	5.354	5.911	8.809	5.182	nan	0.546	0.835	0.299	0.767	0.774	5.903
13969	chr8	3592624	3597083	+	0	NA	intron (NM_001347112, intron 1 of 17)	RLTR11A2|LTR|ERVK	7403	NM_001347111	69697	Mm.390010	NM_027171	ENSMUSG00000044433	Camsap3	2310057J16Rik|Kiaa1543|Nezha	calmodulin regulated spectrin-associated protein family, member 3	protein-coding	7.487	0.518	0.452	1.594	2.836	1.437	4.326	5.030	4.430	6.844	0.804	0.708	4.120	8.735	4.405	5.461	6.955	5.110	0.615	1.737	0.910	1.149	0.636	0.721	7.722
9836	chr3	137805490	137807844	+	0	NA	Intergenic	Intergenic	-57820	NM_001316995	51788	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	8.798	11.082	4.916	9.324	3.834	1.571	9.966	6.669	6.128	8.278	8.384	4.947	10.984	11.618	9.935	8.264	9.364	8.822	6.783	3.932	1.359	6.235	3.643	2.146	9.807
313	chr1	74901543	74906716	+	0	NA	exon (NM_001039495, exon 30 of 33)	exon (NM_001039495, exon 30 of 33)	-3408	NR_029876	723900		NR_029876	ENSMUSG00000065616	Mir375	Mirn375|mir-375|mmu-mir-375	microRNA 375	ncRNA	0.309	1.035	0.452	0.424	0.202	0.068	0.225	0.315	0.230	0.476	0.179	0.116	0.196	0.293	0.303	nan	0.383	nan	nan	nan	2.389	6.561	nan	4.517	nan
15780	chrX	97881702	97884082	+	0	NA	Intergenic	Lx8b|LINE|L1	-265865	NM_013476	11835	Mm.39005	NM_013476	ENSMUSG00000046532	Ar	AW320017|Tfm	androgen receptor	protein-coding	2.904	0.641	0.385	1.964	1.174	0.472	2.288	3.763	2.959	4.169	2.020	0.885	3.994	3.867	2.790	3.748	2.564	2.736	0.836	0.707	0.206	1.142	0.329	0.185	1.698
13418	chr7	95423860	95441576	+	0	NA	Intergenic	Intergenic	-738526	NM_001310762	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	6.155	3.206	1.834	4.994	6.208	4.105	5.392	6.190	4.611	4.864	3.185	1.647	5.667	6.453	5.841	nan	5.506	6.983	nan	1.414	1.179	0.789	0.883	0.811	4.311
14734	chr8	125188525	125191983	+	0	NA	intron (NM_174854, intron 9 of 12)	G-rich|Low_complexity|Low_complexity	136059	NM_174854	244667	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	2.779	nan	0.878	6.235	0.851	0.588	nan	nan	1.873	2.375	0.965	0.705	0.905	1.264	nan	3.034	1.238	3.733	nan	1.184	1.697	nan	1.523	nan	4.035
13497	chr7	107307768	107309311	+	0	NA	intron (NR_035497, intron 3 of 3)	intron (NR_035497, intron 3 of 3)	-62251	NM_021889	60510	Mm.302793	NM_021889	ENSMUSG00000062542	Syt9	-	synaptotagmin IX	protein-coding	4.521	5.599	0.416	6.892	1.894	0.557	5.532	5.876	2.975	8.958	3.851	2.442	5.628	7.390	7.371	7.611	2.661	6.248	nan	1.094	0.846	4.314	0.845	1.616	11.029
4322	chr13	99583061	99590563	+	0	NA	Intergenic	Intergenic	-70210	NM_008634	17755	Mm.4173	NM_008634	ENSMUSG00000052727	Map1b	A230055D22|AI843217|LC1|MAP5|Mtap-5|Mtap1b|Mtap5	microtubule-associated protein 1B	protein-coding	6.790	4.369	1.611	6.786	7.004	5.741	5.247	6.475	5.289	7.708	5.769	3.017	6.358	8.017	6.849	7.120	4.702	6.659	2.338	1.599	1.706	2.764	1.612	2.083	7.159
3023	chr11	116990554	116992726	+	0	NA	Intergenic	Intergenic	72777	NM_172948	268510	Mm.35141	NM_172948	ENSMUSG00000043857	Mgat5b	C330018B01|GnT-IX|mGnTVB	mannoside acetylglucosaminyltransferase 5, isoenzyme B	protein-coding	4.798	nan	0.482	4.529	3.186	1.744	nan	2.366	3.198	4.261	0.806	0.922	3.666	4.687	3.702	5.720	2.878	3.912	1.925	nan	1.056	2.362	0.665	0.345	7.232
6876	chr17	80024413	80026219	+	0	NA	Intergenic	MTA_Mm-int|LTR|ERVL-MaLR	36952	NM_144802	72692	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	2.317	0.738	0.218	3.880	2.729	1.193	1.722	nan	2.739	3.637	0.537	0.444	3.058	5.834	5.662	6.876	2.452	5.059	0.522	0.663	0.122	0.651	0.365	0.345	5.113
14881	chr9	20755347	20758055	+	0	NA	Intergenic	RMER1B|Other|Other	-28487	NM_173777	244723	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	6.253	10.001	3.347	6.008	3.171	1.992	6.067	6.711	4.664	6.871	5.430	2.778	4.512	5.751	5.693	7.307	4.135	5.994	7.964	3.915	4.721	7.507	6.195	5.742	9.344
7136	chr18	35897355	35900658	+	0	NA	Intergenic	Intergenic	-65824	NM_028707	74002	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	8.223	15.314	5.410	5.564	3.110	1.552	4.392	4.598	4.069	4.374	2.564	2.208	4.451	4.058	4.480	5.078	3.736	5.330	5.499	4.625	3.409	5.702	5.079	4.624	6.584
7980	chr2	14525062	14527545	+	0	NA	Intergenic	L1Md_F3|LINE|L1	-78003	NM_023116	12296	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding	1.435	0.828	0.388	3.410	0.971	0.536	2.942	7.001	1.492	2.040	0.767	1.267	1.322	1.453	2.518	1.092	0.462	1.513	0.892	3.971	4.087	5.672	4.157	5.668	1.669
5712	chr15	101903495	101907455	+	0	NA	Intergenic	Intergenic	-12555	NM_001033177	77055	Mm.195788	NM_001033177	ENSMUSG00000075402	Krt76	2310001L23Rik	keratin 76	protein-coding	8.192	7.998	3.657	5.432	3.293	2.029	10.906	10.392	5.167	8.228	5.829	3.712	12.100	10.773	9.626	7.829	9.692	7.472	3.798	2.427	2.216	3.983	2.610	3.115	8.884
11433	chr5	92149819	92158252	+	0	NA	intron (NM_019490, intron 3 of 23)	intron (NM_019490, intron 3 of 23)	16097	NM_019490	56041	Mm.15868	NM_019490	ENSMUSG00000029407	Uso1	115kDa|TAP|Vdp	USO1 vesicle docking factor	protein-coding	0.649	7.726	4.222	0.364	0.208	0.075	1.159	1.683	0.436	0.430	1.066	1.095	0.589	0.595	0.770	0.735	0.932	0.624	0.880	0.596	0.387	0.602	0.597	0.432	0.383
7035	chr18	12661164	12664844	+	0	NA	intron (NM_028341, intron 1 of 13)	intron (NM_028341, intron 1 of 13)	19471	NM_028341	72747	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	nan	0.772	0.357	0.505	0.319	0.202	1.778	3.371	1.165	0.922	5.956	2.962	nan	0.724	0.789	0.928	0.551	0.712	1.203	0.511	0.332	0.698	0.777	0.595	0.660
10413	chr4	116924133	116925932	+	0	NA	intron (NM_001029912, intron 1 of 13)	Lx2B2|LINE|L1	47630	NM_001029912	74464	Mm.218946	NM_001029912	ENSMUSG00000033948	Zswim5	4933426E21Rik|AI503093|mKIAA1511	zinc finger SWIM-type containing 5	protein-coding	5.200	3.496	1.015	4.870	3.265	2.386	4.247	5.327	2.601	5.191	3.384	1.538	4.020	6.037	5.087	5.873	3.599	4.192	2.298	1.677	1.859	2.898	1.941	1.848	7.928
6600	chr17	35833055	35837515	+	0	NA	exon (NM_011655, exon 4 of 4)	exon (NM_011655, exon 4 of 4)	3016	NM_011655	22154	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	6.119	1.771	0.564	3.371	3.921	2.716	11.304	7.391	3.250	4.463	5.883	3.149	4.844	8.193	4.766	5.903	5.805	4.567	5.098	3.937	3.324	4.472	6.068	4.468	7.470
8869	chr2	156119686	156121942	+	0	NA	Intergenic	Lx3A|LINE|L1	-8849	NM_170588	266692	Mm.27660	NM_170588	ENSMUSG00000074643	Cpne1	1810028N16Rik|mKIAA4108	copine I	protein-coding	6.667	6.511	2.905	3.212	2.092	1.052	3.988	5.598	2.948	2.596	1.238	0.924	4.158	4.678	3.545	4.438	3.352	4.046	7.809	4.591	1.697	7.414	7.077	3.904	4.039
3077	chr11	119160205	119162975	+	0	NA	intron (NM_001347625, intron 3 of 11)	intron (NM_001347625, intron 3 of 11)	-7453	NR_105899	102465563		NR_105899	ENSMUSG00000098704	Mir6934	Gm27523|mmu-mir-6934	microRNA 6934	ncRNA	5.741	nan	2.877	6.810	4.316	2.484	4.745	nan	3.315	5.883	3.577	2.827	3.717	6.995	5.760	6.491	3.748	5.755	4.123	nan	3.401	4.505	3.759	3.172	7.625
3305	chr12	41182420	41187606	+	0	NA	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	160923	NM_053122	93757	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	5.200	nan	0.505	3.246	2.340	1.038	5.583	3.753	nan	2.612	0.934	0.890	3.523	5.104	6.591	5.900	3.476	5.218	nan	0.843	0.314	0.798	0.438	0.246	7.140
3433	chr12	75083114	75086235	+	0	NA	intron (NM_172805, intron 7 of 10)	L1MD2|LINE|L1	92658	NM_172805	238271	Mm.44465	NM_172805	ENSMUSG00000034402	Kcnh5	Eag2	potassium voltage-gated channel, subfamily H (eag-related), member 5	protein-coding	0.620	0.817	0.462	0.644	0.438	0.121	0.411	0.537	0.556	0.482	0.718	0.539	0.502	nan	0.575	0.808	0.817	0.635	4.869	2.641	1.454	4.770	4.605	2.629	0.539
10039	chr4	45464520	45468788	+	0	NA	intron (NM_001033306, intron 2 of 5)	intron (NM_001033306, intron 2 of 5)	-57888	NM_001009949	230125	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	6.620	4.153	1.652	5.952	2.487	1.036	6.831	7.222	5.000	6.008	4.198	2.686	6.401	6.817	9.095	10.151	3.218	7.824	3.350	0.826	0.782	2.702	2.341	1.398	10.166
6607	chr17	36033552	36035488	+	0	NA	intron (NR_015618, intron 1 of 1)	intron (NR_015618, intron 1 of 1)	-1819	NM_010398	15040	Mm.439648	NM_010398	ENSMUSG00000067212	H2-T23	37b|37c|H-2T23|H2-Qa1|Qa-1|Qa-1(b)|Qa1|Qed-1|T18c|T18c(37)|T23b|T23d	histocompatibility 2, T region locus 23	protein-coding	5.496	10.159	2.236	7.377	1.738	0.917	7.029	4.611	3.217	10.167	4.230	3.379	3.773	5.466	6.540	8.194	4.535	6.561	7.259	2.345	1.680	8.199	5.617	3.957	11.701
9201	chr3	27924570	27931644	+	0	NA	Intergenic	B1F|SINE|Alu	-10573	NM_001164056	18805	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	5.856	0.963	0.801	2.902	2.764	1.556	7.733	5.147	5.078	4.545	2.065	2.756	7.430	6.478	6.129	8.176	6.725	7.019	3.163	1.747	0.981	2.334	2.630	1.678	6.293
15493	chr9	107883677	107886664	+	0	NA	Intergenic	B1_Mur4|SINE|Alu	-2959	NM_028369	72825	Mm.38037	NM_028369	ENSMUSG00000032583	Mon1a	2810468K17Rik	MON1 homolog A, secretory traffciking associated	protein-coding	4.406	6.427	1.460	5.635	1.151	0.682	1.960	1.505	nan	nan	1.716	0.782	1.243	2.803	2.810	3.565	1.378	nan	0.778	0.949	0.515	1.295	0.530	0.642	4.768
14619	chr8	114180063	114184476	+	0	NA	Intergenic	Intergenic	-23371	NM_173016	270097	Mm.334825	NM_173016	ENSMUSG00000046844	Vat1l	9430073I07|AI427515|mKIAA1576	vesicle amine transport protein 1 like	protein-coding	7.814	3.527	1.421	4.249	4.934	3.053	4.696	8.330	4.158	4.385	4.349	3.166	5.805	4.917	4.254	5.268	4.429	6.382	1.206	1.067	1.365	1.561	1.105	0.914	4.532
15313	chr9	75375211	75380123	+	0	NA	Intergenic	B1_Mur4|SINE|Alu	29909	NM_013479	12049	Mm.25988	NM_013479	ENSMUSG00000032191	Bcl2l10	AA420380|AU023065|Boo|C85687|Diva	Bcl2-like 10	protein-coding	2.493	0.828	0.287	2.565	2.316	1.644	2.505	4.186	3.981	3.484	2.500	1.902	3.795	4.493	3.023	3.625	1.824	3.417	0.927	nan	0.579	0.517	0.591	0.565	nan
11200	chr5	40034026	40037088	+	0	NA	Intergenic	Intergenic	-390926	NM_010474	15476	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	4.368	4.740	1.797	5.273	0.964	0.726	4.759	5.806	4.396	4.492	3.291	4.732	5.496	4.536	nan	5.288	nan	5.861	3.486	1.005	1.154	3.552	1.943	1.778	7.551
5021	chr15	7067212	7068903	+	0	NA	Intergenic	Intergenic	-61515	NM_001113386	16880	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	2.613	1.167	0.562	2.315	0.794	0.174	1.524	2.745	2.252	1.868	0.487	0.339	3.845	3.688	1.170	2.034	1.424	1.648	0.689	0.465	0.362	1.107	0.354	0.162	1.321
13563	chr7	116846740	116851536	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	344769	NM_001130479	53322	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	4.868	3.411	1.509	5.393	2.436	2.013	3.182	5.904	2.478	3.224	4.777	2.795	4.491	3.267	3.425	4.049	3.357	4.538	2.429	1.380	1.146	2.941	2.132	1.986	4.763
11632	chr5	117862914	117865979	+	0	NA	Intergenic	Intergenic	-2393	NM_008712	18125	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	1.226	1.794	0.895	0.908	0.552	0.202	1.006	0.684	0.570	1.514	0.192	0.645	0.712	1.248	1.129	1.203	1.357	1.248	6.663	nan	3.593	6.047	7.444	6.814	1.938
8025	chr2	25823299	25827612	+	0	NA	TTS (NM_029959)	TTS (NM_029959)	2302	NM_029959	77704	Mm.159974	NM_029959	ENSMUSG00000023210	Lcn9	9230102I19Rik	lipocalin 9	protein-coding	6.039	1.588	1.237	4.504	3.831	2.148	3.726	4.072	5.308	5.109	1.508	1.765	6.441	7.720	2.895	4.233	4.211	6.730	4.601	2.456	1.800	3.607	7.963	5.631	5.292
7197	chr18	39640984	39643237	+	0	NA	Intergenic	Lx7|LINE|L1	-131387	NM_011033	18459	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	2.845	1.893	1.028	3.234	3.940	1.764	2.075	4.921	3.463	2.986	0.853	1.252	3.108	2.594	2.487	3.039	3.036	4.704	2.347	1.259	0.054	1.083	1.085	0.513	1.108
12009	chr5	151936883	151941072	+	0	NA	Intergenic	Intergenic	-287769	NM_027009	69263	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	5.291	2.248	1.713	4.959	3.580	2.158	4.733	3.011	nan	6.733	2.160	1.338	5.435	7.927	5.292	6.557	5.098	6.303	1.041	1.282	0.933	0.927	0.866	0.863	5.739
7182	chr18	38456403	38458266	+	0	NA	intron (NM_022996, intron 6 of 7)	intron (NM_022996, intron 6 of 7)	38359	NM_022996	65113	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	13.102	13.139	6.944	10.205	7.641	5.488	10.692	12.941	5.825	11.164	6.695	4.507	9.453	10.816	8.710	10.531	6.053	9.220	5.648	4.375	3.949	5.854	5.882	5.626	12.390
4267	chr13	81795795	81797936	+	0	NA	3' UTR (NM_007684, exon 5 of 5)	3' UTR (NM_007684, exon 5 of 5)	13573	NM_007684	12626	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	6.715	7.050	2.786	8.672	4.374	2.990	5.481	6.718	5.098	7.019	5.631	4.050	5.875	7.989	8.026	8.704	4.611	7.467	4.844	2.287	2.938	5.769	3.196	4.032	10.121
7055	chr18	20897528	20909434	+	0	NA	Intergenic	MMERVK10C-int|LTR|ERVK	-7403	NM_029491	75964	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	nan	1.309	0.525	0.827	0.590	0.301	6.854	8.879	2.897	2.258	2.158	2.530	3.887	4.362	4.203	2.870	2.280	2.660	4.813	1.988	1.552	3.936	5.398	4.493	2.360
7323	chr18	64870598	64871894	+	0	NA	Intergenic	Lx|LINE|L1	-16510	NM_001114386	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	2.901	0.568	0.457	0.858	4.031	1.088	3.907	4.485	2.726	3.173	1.208	1.364	2.551	4.873	3.586	3.023	1.938	3.128	0.916	0.795	0.690	0.876	0.604	0.299	1.589
8436	chr2	91026205	91029036	+	0	NA	Intergenic	MTB_Mm-int|LTR|ERVL-MaLR	-8007	NM_009023	19400	Mm.1272	NM_009023	ENSMUSG00000002104	Rapsn	43kDa|Nraps|Raps|rapsyn	receptor-associated protein of the synapse	protein-coding	3.566	1.713	1.941	1.505	3.356	2.644	6.002	6.353	2.619	2.651	2.354	5.463	3.746	3.073	2.258	2.103	2.687	2.180	2.496	2.110	2.713	0.988	4.626	4.892	1.096
3715	chr12	110067557	110076688	+	0	NA	Intergenic	MTEb-int|LTR|ERVL-MaLR	85951	NR_045466	67280	Mm.390495	NR_045466		3110009F21Rik	-	RIKEN cDNA 3110009F21 gene	ncRNA	3.600	2.661	0.763	nan	1.270	0.611	4.855	4.410	nan	nan	1.493	0.748	4.492	nan	4.092	5.147	4.147	4.703	3.329	1.569	1.426	5.191	2.451	1.878	nan
12451	chr6	90932682	90939793	+	0	NA	Intergenic	B3|SINE|B2	-126114	NM_001134384	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	3.523	0.977	0.477	3.373	1.771	0.730	7.484	6.476	2.162	3.948	2.384	1.635	4.676	7.854	6.535	7.138	4.053	nan	2.510	0.970	0.603	1.495	2.971	2.229	6.346
14347	chr8	75865745	75869359	+	0	NA	intron (NM_001164235, intron 12 of 13)	Lx2|LINE|L1	418858	NM_001164235	71831	Mm.443238	NM_027944	ENSMUSG00000031620	1700007B14Rik	-	RIKEN cDNA 1700007B14 gene	protein-coding	3.647	nan	0.375	3.405	4.305	1.578	nan	3.989	nan	2.702	0.752	0.966	2.277	6.807	6.280	6.372	2.923	7.045	1.276	1.345	0.365	2.961	1.275	0.575	5.341
1495	chr10	79894915	79901991	+	0	NA	intron (NM_198107, intron 9 of 14)	intron (NM_198107, intron 9 of 14)	7600	NM_001291915	11537	Mm.4407	NM_013459	ENSMUSG00000061780	Cfd	Adn|DF	complement factor D (adipsin)	protein-coding	3.706	8.077	2.562	nan	2.015	1.432	4.193	5.485	3.040	4.785	4.339	2.436	3.687	4.816	nan	5.640	2.975	4.269	nan	2.241	1.555	3.407	2.338	2.223	5.532
3187	chr12	14292424	14294478	+	0	NA	Intergenic	Lx8b|LINE|L1	31917	NR_045003	791361	Mm.217963	NR_045003		Gm16497	ENSMUSG00000066623	predicted gene 16497	ncRNA	3.126	0.447	0.482	1.124	1.830	1.669	3.844	2.955	2.607	1.943	5.850	3.525	4.293	2.576	3.221	3.024	4.189	2.632	1.561	1.135	0.955	0.782	1.504	1.451	2.595
13408	chr7	91274828	91301353	+	0	NA	intron (NM_011807, intron 1 of 22)	intron (NM_011807, intron 1 of 22)	197304	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	6.615	2.200	0.924	6.852	6.466	3.582	6.078	8.816	nan	8.066	4.389	2.743	9.378	11.116	6.993	6.281	5.873	10.332	1.604	1.482	0.979	nan	2.014	1.389	6.260
13337	chr7	82992673	82994472	+	0	NA	Intergenic	Intergenic	-22181	NR_045855	71285	Mm.76818	NR_045855	ENSMUSG00000109106	4933430H16Rik	-	RIKEN cDNA 4933430H16 gene	ncRNA	4.798	8.972	2.718	5.710	2.380	1.562	4.738	7.070	3.172	5.078	3.575	1.860	7.597	4.482	4.574	6.257	3.724	7.237	3.609	2.237	3.518	5.320	3.483	2.407	14.115
12532	chr6	99147663	99151596	+	0	NA	intron (NM_001347345, intron 5 of 19)	intron (NM_001347345, intron 5 of 19)	116886	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	2.943	1.155	0.778	2.353	3.284	1.256	2.135	6.560	3.709	3.193	4.456	3.289	2.384	3.992	nan	3.089	2.164	3.548	nan	nan	0.397	1.020	0.751	0.454	1.239
5055	chr15	12047342	12048813	+	0	NA	Intergenic	B1_Mur1|SINE|Alu	-52070	NM_011294	20024	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	14.815	21.763	5.388	14.265	7.033	3.768	17.150	17.775	6.132	24.115	10.110	4.093	13.365	15.717	13.589	14.453	11.194	13.093	7.967	2.924	6.833	8.898	5.663	8.592	27.323
13449	chr7	104228195	104232534	+	0	NA	intron (NM_001013616, intron 4 of 7)	ID4|SINE|ID	11569	NM_001013616	94088	Mm.274843	NM_001013616	ENSMUSG00000072244	Trim6	C430046K18Rik|D7Ertd684e	tripartite motif-containing 6	protein-coding	6.704	4.222	1.170	9.179	4.597	3.009	2.604	4.120	3.800	9.291	3.607	2.039	3.193	nan	4.986	nan	2.817	6.753	nan	1.962	2.311	3.657	2.028	2.878	8.966
8178	chr2	35025819	35030650	+	0	NA	intron (NM_010406, intron 16 of 40)	intron (NM_010406, intron 16 of 40)	33207	NM_010406	15139	Mm.2168	NM_010406	ENSMUSG00000026874	Hc	C5|C5a|He	hemolytic complement	protein-coding	4.982	1.247	0.541	3.807	2.459	2.192	3.602	5.507	3.416	nan	2.065	1.269	4.074	5.687	3.983	6.437	3.945	5.361	0.783	0.520	0.381	0.723	0.628	0.434	6.623
2756	chr11	98820054	98827049	+	0	NA	intron (NM_138660, intron 7 of 13)	intron (NM_138660, intron 7 of 13)	-13234	NM_001080925	268480	Mm.340766	NM_001080925	ENSMUSG00000038020	Rapgefl1	B230105J10	Rap guanine nucleotide exchange factor (GEF)-like 1	protein-coding	6.468	4.568	0.875	9.571	2.909	1.855	5.558	7.262	3.842	6.665	4.223	2.442	4.269	5.983	6.462	7.970	nan	6.701	1.960	nan	1.981	3.938	nan	nan	9.536
1919	chr11	4600326	4604912	+	0	NA	Intergenic	Intergenic	-7804	NM_028860	74302	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	4.348	4.857	2.433	3.870	3.786	3.140	3.491	4.760	2.927	3.210	2.574	2.743	3.221	4.233	4.503	4.081	2.748	3.566	4.352	nan	2.199	2.753	4.288	3.587	3.447
1938	chr11	5907086	5909761	+	0	NA	intron (NM_010292, intron 4 of 9)	RMER6A|LTR|ERVK	6712	NM_001287386	103988	Mm.220358	NM_010292	ENSMUSG00000041798	Gck	GLK|Gk|Gls006|HK4|HKIV|HXKP|Hlb62|MODY2	glucokinase	protein-coding	nan	9.073	5.709	2.648	0.323	0.329	0.942	1.308	2.984	1.832	5.181	3.326	0.922	2.528	0.018	0.477	0.687	0.486	0.562	nan	1.682	3.412	1.273	1.323	1.048
7654	chr19	24345499	24347348	+	0	NA	intron (NM_008846, intron 12 of 14)	intron (NM_008846, intron 12 of 14)	-65837	NM_008044	14297	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	4.044	3.019	0.568	3.202	3.147	1.364	4.542	6.598	2.772	3.908	nan	1.701	3.300	6.607	4.949	5.817	3.396	4.085	nan	1.412	0.762	2.728	nan	1.097	5.416
15207	chr9	65308202	65312094	+	0	NA	intron (NM_001044389, intron 4 of 12)	intron (NM_001044389, intron 4 of 12)	15888	NM_011802	270166	Mm.30088	NM_011802	ENSMUSG00000015357	Clpx	AU014732|E330029I21	caseinolytic mitochondrial matrix peptidase chaperone subunit	protein-coding	6.125	3.277	1.459	5.372	3.641	2.389	4.265	4.106	3.852	6.266	3.101	1.844	5.348	8.091	nan	5.910	4.385	6.130	nan	2.634	1.808	2.535	2.715	1.749	7.783
15090	chr9	54756070	54758189	+	0	NA	Intergenic	Intergenic	-7619	NM_001284507	12903	Mm.34797	NM_013496	ENSMUSG00000032291	Crabp1	AI326249|CRABP-I|Crabp-1|CrabpI|Rbp-5	cellular retinoic acid binding protein I	protein-coding	3.206	0.383	0.622	1.962	1.650	0.962	3.435	nan	4.978	4.381	2.369	1.990	3.944	4.808	4.048	4.614	3.114	4.512	0.708	0.406	0.394	0.509	0.490	0.135	1.887
5545	chr15	85997916	86001246	+	0	NA	intron (NM_009886, intron 1 of 34)	ID4_|SINE|ID	34196	NM_009886	12614	Mm.22680	NM_009886	ENSMUSG00000016028	Celsr1	Adgrc1|Crsh|Scy|crash	cadherin, EGF LAG seven-pass G-type receptor 1	protein-coding	7.013	5.532	2.027	6.361	3.993	2.098	nan	3.467	3.607	5.651	4.663	3.425	2.501	4.637	nan	4.258	nan	5.117	1.783	1.500	0.914	nan	0.497	0.462	6.140
5277	chr15	67003996	67010138	+	0	NA	Intergenic	RMER21B|LTR|ERV1	-37426	NM_008681	17988	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	12.850	12.727	3.239	10.874	3.953	1.907	12.981	17.618	7.402	10.731	4.013	2.252	14.061	11.093	13.339	11.421	9.194	12.507	2.278	2.158	1.433	4.418	1.755	1.150	15.828
11955	chr5	147671787	147674179	+	0	NA	intron (NM_010228, intron 9 of 29)	B1_Mus1|SINE|Alu	53005	NM_010228	14254	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	4.529	4.295	2.903	nan	3.203	2.002	5.768	2.319	nan	3.933	2.317	0.793	3.582	6.730	3.847	4.340	3.567	4.397	3.492	3.338	2.499	3.173	4.768	3.226	3.949
13993	chr8	11253799	11256668	+	0	NA	intron (NR_133670, intron 2 of 52)	intron (NR_133670, intron 2 of 52)	-57572	NM_009932	12827	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	3.194	0.968	0.571	3.097	2.765	0.906	2.246	3.236	2.385	2.698	0.773	0.685	2.598	2.653	2.978	3.952	2.729	4.243	0.953	1.411	0.700	1.509	0.404	0.198	2.858
9390	chr3	82870911	82872855	+	0	NA	intron (NM_001277170, intron 1 of 5)	L1MC|LINE|L1	4600	NM_001277170	633285	Mm.265114	NM_001146328	ENSMUSG00000033882	Rbm46	EG633285|ENSMUSG00000033882|Gm761	RNA binding motif protein 46	protein-coding	4.484	0.671	0.472	3.673	2.567	1.921	2.101	2.448	3.240	4.064	0.339	0.496	3.285	5.406	2.456	3.576	2.169	5.742	0.411	0.379	0.441	0.661	0.889	0.440	2.738
14004	chr8	11391042	11397279	+	0	NA	intron (NM_009932, intron 4 of 47)	intron (NM_009932, intron 4 of 47)	-81334	NM_009931	12826	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	6.029	1.420	0.587	5.622	6.040	2.861	4.072	3.263	3.585	4.778	1.633	1.235	4.153	6.744	5.326	6.979	3.838	5.838	1.065	1.109	0.695	1.276	0.959	0.572	6.267
516	chr1	121113376	121118295	+	0	NA	intron (NR_038008, intron 3 of 4)	intron (NR_038008, intron 3 of 4)	28430	NR_110450	98452	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	5.314	0.978	0.385	5.775	4.439	2.420	2.838	6.077	4.520	6.866	2.942	1.461	4.170	5.778	4.413	5.792	3.388	3.200	1.074	0.748	0.615	1.343	0.658	0.460	4.892
7229	chr18	50187362	50198798	+	0	NA	intron (NM_008292, intron 23 of 23)	intron (NM_008292, intron 23 of 23)	64879	NM_008292	15488	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	2.287	10.037	4.446	1.603	0.801	0.482	1.489	2.662	1.879	1.424	3.565	2.536	0.956	1.410	1.581	1.280	1.008	nan	0.962	1.408	0.788	0.977	0.867	0.624	2.022
1813	chr10	121182707	121194668	+	0	NA	Intergenic	MLTR25A|LTR|ERVK	122502	NM_029057	74694	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik	TBC1 domain family, member 30	protein-coding	6.571	0.674	0.521	2.071	2.830	1.854	4.759	2.286	2.806	3.114	0.432	0.404	6.418	5.808	4.450	6.611	7.145	nan	0.749	0.473	0.451	0.459	0.444	0.621	6.436
2004	chr11	20107448	20108870	+	0	NA	intron (NM_146243, intron 1 of 8)	Lx8b|LINE|L1	4792	NM_146243	66713	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	1.978	nan	0.791	2.266	2.760	1.725	1.534	2.179	1.313	1.620	1.007	0.710	0.895	2.475	1.421	1.591	1.418	1.868	0.669	0.768	1.024	0.756	0.897	1.008	1.257
13988	chr8	10976502	10980622	+	0	NA	Intergenic	CpG	-29288	NR_046017	619321	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	5.894	1.287	0.800	5.060	6.089	3.551	6.568	6.972	4.499	6.906	3.216	2.702	7.679	9.433	6.863	9.236	5.805	5.993	1.500	2.277	1.570	3.500	1.633	1.034	8.591
4754	chr14	64054859	64062423	+	0	NA	Intergenic	Intergenic	26748	NM_001081063	71037	Mm.19977	NM_001081063	ENSMUSG00000034623	Prss55	4933401F05Rik	protease, serine 55	protein-coding	3.844	3.702	1.664	2.964	3.097	1.780	2.317	1.735	1.955	3.465	2.959	1.081	3.135	6.700	2.548	1.734	0.964	3.665	1.573	nan	1.161	2.384	1.288	0.955	6.134
10613	chr4	131856977	131859585	+	0	NA	intron (NM_025297, intron 4 of 9)	intron (NM_025297, intron 4 of 9)	14810	NM_025297	26922	Mm.192706	NM_025297	ENSMUSG00000028910	Mecr	AI195831|Nrbf1	mitochondrial trans-2-enoyl-CoA reductase	protein-coding	1.762	4.001	0.915	2.836	1.558	0.948	1.494	1.893	1.377	2.053	1.236	0.946	0.942	1.426	nan	2.335	1.172	2.138	1.501	1.850	2.311	4.490	1.400	1.320	2.948
6128	chr16	52654282	52655847	+	0	NA	Intergenic	Intergenic	160680	NR_040495	73820	Mm.60493	NR_040495		4930404A05Rik	-	RIKEN cDNA 4930404A05 gene	ncRNA	4.694	0.314	0.081	2.281	1.826	0.519	4.328	4.522	3.105	2.918	1.503	0.772	7.803	4.485	4.215	3.940	6.412	6.990	0.964	0.825	0.890	0.878	0.464	0.474	1.504
9506	chr3	94141699	94143099	+	0	NA	Intergenic	MMERVK10C-int|LTR|ERVK	35794	NM_001146107	100043188	Mm.304029	NM_001146107	ENSMUSG00000074424	Gm10696	ENSMUSG00000074424	predicted gene 10696	protein-coding	1.281	0.649	0.260	2.353	1.333	0.354	2.592	4.832	3.301	3.006	2.041	0.419	3.309	4.477	2.642	3.533	2.274	3.121	0.537	0.187	0.118	0.371	0.465	0.122	1.424
702	chr1	138560005	138563380	+	0	NA	intron (NM_001311148, intron 2 of 7)	intron (NM_001311148, intron 2 of 7)	58065	NM_021605	59125	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	5.515	0.793	0.914	nan	1.799	0.983	4.530	4.343	3.172	2.761	1.810	3.124	4.993	4.539	4.656	nan	4.827	3.791	3.425	1.627	2.239	2.257	3.439	3.193	nan
2297	chr11	61462536	61474369	+	0	NA	Intergenic	Intergenic	-14460	NM_001291024	22671	Mm.89201	NM_009548	ENSMUSG00000010086	Rnf112	ZNF179|Zfp179|bfp|neurolastin	ring finger protein 112	protein-coding	2.324	10.192	6.519	2.829	1.255	0.845	0.831	1.753	1.453	1.127	1.403	1.115	0.621	nan	1.220	1.399	0.951	1.909	nan	1.546	1.345	1.030	1.114	0.901	nan
6896	chr17	83711319	83712672	+	0	NA	intron (NM_001171053, intron 2 of 13)	B1F2|SINE|Alu	5832	NM_001171052	116871	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	4.653	4.584	1.746	5.110	2.220	1.559	5.102	3.634	nan	3.938	4.311	7.104	2.819	4.120	4.306	6.073	3.608	3.526	0.834	1.581	1.260	1.460	1.018	0.749	5.175
14268	chr8	69384236	69386000	+	0	NA	intron (NR_038043, intron 1 of 5)	Lx5|LINE|L1	10426	NR_038044	378466	Mm.37846	NM_194351	ENSMUSG00000110444	Gm10033	9330175B10Rik|ENSMUSG00000057924|Gm10311	predicted gene 10033	ncRNA	2.518	6.421	1.557	4.322	1.468	1.281	1.331	3.520	1.665	5.211	1.677	1.599	1.977	2.624	3.887	5.678	2.184	3.507	nan	2.035	2.648	6.860	4.046	4.803	6.045
6799	chr17	66698337	66726820	+	0	NA	intron (NM_008984, intron 21 of 30)	intron (NM_008984, intron 21 of 30)	-117956	NM_028998	74556	Mm.218634	NM_028998	ENSMUSG00000024105	Themis3	9130404H23Rik	thymocyte selection associated family member 3	protein-coding	4.761	0.541	0.321	4.677	3.007	1.744	7.926	5.363	nan	6.035	2.723	2.312	7.251	7.740	8.428	10.344	5.513	7.611	1.152	0.570	0.504	1.103	0.718	0.512	8.029
9750	chr3	121352831	121355207	+	0	NA	intron (NM_024178, intron 3 of 3)	intron (NM_024178, intron 3 of 3)	62202	NM_024178	66789	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	5.206	1.533	1.009	4.523	4.828	3.989	6.936	5.572	4.265	5.422	4.121	3.153	6.231	9.387	5.787	5.796	2.881	7.181	1.529	1.210	0.673	1.652	nan	0.914	6.999
14131	chr8	34987950	35002069	+	0	NA	Intergenic	RLTR9A3|LTR|ERVK	-29319	NM_175091	21951	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	5.700	0.998	0.554	4.310	3.188	2.242	4.374	5.505	4.668	4.641	2.111	1.783	7.099	7.496	7.405	7.433	5.019	7.589	1.481	0.635	0.686	1.137	1.384	1.266	6.523
15043	chr9	46037807	46041873	+	0	NA	intron (NM_027498, intron 1 of 24)	LTR73|LTR|ERV1	27020	NM_027498	70661	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	0.579	0.636	0.260	0.600	0.187	0.121	0.918	2.009	0.419	0.578	0.682	0.261	0.750	0.829	nan	nan	0.961	0.920	0.879	1.562	0.623	nan	0.734	0.245	nan
15166	chr9	62188158	62194951	+	0	NA	Intergenic	Intergenic	52546	NR_040769	330958	Mm.411888	NR_040769	ENSMUSG00000111232	A730043L09Rik	A730043L09	RIKEN cDNA A730043L09 gene	ncRNA	10.689	13.800	4.840	12.041	5.504	3.041	9.131	9.014	6.796	12.686	2.845	4.241	7.865	11.313	10.012	10.614	6.304	10.800	6.546	4.540	4.858	8.219	5.200	5.143	19.676
357	chr1	82582285	82585437	+	0	NA	intron (NM_007735, intron 1 of 47)	MTB_Mm|LTR|ERVL-MaLR	2988	NM_007735	12829	Mm.40253	NM_007735	ENSMUSG00000067158	Col4a4	E130010M05Rik|[a]4(IV)	collagen, type IV, alpha 4	protein-coding	5.817	0.435	0.336	4.634	2.621	1.276	4.446	2.450	2.598	4.120	1.157	0.736	5.709	8.219	4.710	7.853	4.848	6.547	nan	nan	0.739	1.199	nan	0.259	9.499
4679	chr14	55363195	55368578	+	0	NA	Intergenic	MER21-int|LTR|ERVL	-112872	NM_001037938	28200	Mm.27427	NM_030686	ENSMUSG00000022210	Dhrs4	AI043103|AI790593|CR|D14Ucla2|NDRD|PHCR|PSCD|RRD|mouNRDR	dehydrogenase/reductase (SDR family) member 4	protein-coding	3.066	nan	0.352	2.269	1.223	0.836	1.044	4.416	2.171	2.664	0.898	0.828	2.664	5.443	1.357	2.156	1.947	2.971	0.297	0.611	0.305	0.386	0.444	0.284	2.879
3236	chr12	25794360	25796045	+	0	NA	Intergenic	MER58A|DNA|hAT-Charlie	415303	NR_131149	629481	Mm.390460	NR_131149		Gm29687	-	predicted gene, 29687	ncRNA	1.966	1.065	0.907	0.963	1.186	1.174	3.603	3.596	1.467	0.821	6.192	3.748	1.262	1.841	3.345	1.736	1.423	0.904	0.828	1.081	1.048	1.677	0.323	0.470	2.443
13549	chr7	113379616	113382305	+	0	NA	Intergenic	Intergenic	7613	NM_020623	19226	Mm.284168	NM_020623	ENSMUSG00000059077	Pth	Pthp	parathyroid hormone	protein-coding	7.623	15.175	7.490	6.906	4.161	2.540	2.052	1.621	4.934	4.195	3.455	1.265	2.302	4.034	3.622	3.565	3.456	5.538	1.851	2.809	1.069	0.872	0.599	0.428	2.520
12145	chr6	34428056	34431804	+	0	NA	Intergenic	L1Md_T|LINE|L1	17568	NM_009731	11997	Mm.482073	NM_009731	ENSMUSG00000052131	Akr1b7	AR|Avdp|MVDP	aldo-keto reductase family 1, member B7	protein-coding	3.464	4.943	2.787	3.248	1.659	0.756	2.819	2.162	4.145	3.668	2.157	2.595	4.620	4.234	5.553	8.419	3.364	nan	3.487	1.974	0.890	nan	nan	1.310	nan
7106	chr18	33619856	33624320	+	0	NA	Intergenic	Intergenic	157925	NR_045415	433171	Mm.353332	NR_045415		Gm10549	ENSMUSG00000073610	predicted gene 10549	ncRNA	6.129	3.354	1.825	3.164	2.299	1.111	4.255	2.668	2.774	4.283	2.084	0.940	4.724	4.211	4.748	nan	5.792	6.134	1.600	1.565	1.524	2.064	1.526	1.557	8.369
455	chr1	93337725	93346836	+	0	NA	intron (NM_080850, intron 1 of 17)	intron (NM_080850, intron 1 of 17)	508	NM_080850	269224	Mm.379454	NM_080850	ENSMUSG00000026274	Pask	mKIAA0135	PAS domain containing serine/threonine kinase	protein-coding	6.566	nan	0.314	5.879	2.590	1.349	6.234	6.503	5.186	6.352	2.363	1.472	7.971	7.241	8.286	12.184	5.767	8.811	nan	0.564	0.710	nan	0.546	0.366	6.820
9050	chr2	168558630	168560525	+	0	NA	intron (NR_111898, intron 2 of 5)	intron (NR_111898, intron 2 of 5)	30788	NM_001291178	18019	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	6.795	1.446	1.519	2.510	4.967	4.240	9.149	7.717	3.777	3.801	5.983	2.926	5.449	5.364	4.634	8.736	8.540	4.789	5.813	4.024	6.410	5.207	9.626	11.333	12.531
5395	chr15	78160088	78163651	+	0	NA	intron (NM_025931, intron 6 of 6)	intron (NM_025931, intron 6 of 6)	12239	NM_025931	67042	Mm.30191	NM_025931	ENSMUSG00000016637	Ift27	2600013G09Rik|Rabl4	intraflagellar transport 27	protein-coding	6.370	nan	1.099	1.976	2.554	1.464	8.154	5.784	2.454	nan	nan	0.496	4.896	5.269	4.686	4.874	5.645	2.691	0.808	1.055	0.468	nan	0.465	0.365	5.600
7371	chr18	70686630	70700506	+	0	NA	Intergenic	Intergenic	125276	NM_010773	17191	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	3.094	10.324	6.022	2.202	1.172	0.631	2.891	3.638	1.988	2.080	1.461	1.680	3.248	2.560	2.572	2.785	2.931	2.562	3.233	1.944	1.184	2.791	2.242	1.795	2.905
4472	chr14	12514725	12515928	+	0	NA	intron (NM_012061, intron 11 of 28)	intron (NM_012061, intron 11 of 28)	-169461	NM_080433	54713	Mm.34644	NM_080433	ENSMUSG00000021743	Fezf2	AI451466|AI852056|Fez|Fezl|Zfp312	Fez family zinc finger 2	protein-coding	2.438	0.216	0.605	1.756	2.412	1.282	3.173	3.118	3.456	2.065	2.029	1.631	2.855	3.360	4.078	4.199	2.555	4.351	0.985	0.784	0.988	1.004	1.185	0.020	2.637
7939	chr2	4837932	4840428	+	0	NA	Intergenic	L1MB4|LINE|L1	-42384	NM_175400	109079	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	8.121	12.375	6.207	7.320	4.569	3.643	4.424	9.176	6.693	6.165	3.109	4.099	6.853	6.761	6.595	8.608	7.907	7.931	4.351	3.260	4.034	5.023	4.300	4.376	10.791
3181	chr12	11394333	11398174	+	0	NA	intron (NM_012038, intron 1 of 3)	intron (NM_012038, intron 1 of 3)	40396	NM_012038	26950	Mm.27005	NM_012038	ENSMUSG00000054459	Vsnl1	VILIP|Vnsl1	visinin-like 1	protein-coding	0.514	0.605	0.785	0.605	0.173	0.031	0.434	0.274	0.234	0.217	10.756	3.974	0.100	0.301	0.379	0.434	0.574	0.435	0.474	0.413	0.160	0.216	0.186	0.201	0.462
15837	chrX	146893515	146894367	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-68572	NM_008312	15560	Mm.439670	NM_008312	ENSMUSG00000041380	Htr2c	5-HT2C|5-HT2cR|5-HTR2C|5HT1c|Htr1c|SR1	5-hydroxytryptamine (serotonin) receptor 2C	protein-coding	3.706	3.603	2.411	2.715	3.298	1.131	4.012	4.724	2.454	5.243	2.852	2.098	2.644	4.099	3.596	4.002	3.242	3.301	2.503	2.071	2.905	3.032	2.275	1.400	4.991
2612	chr11	88048313	88052848	+	0	NA	3' UTR (NM_001078167, exon 3 of 3)	3' UTR (NM_001078167, exon 3 of 3)	3207	NM_173374	110809	Mm.391719	NM_173374	ENSMUSG00000018379	Srsf1	1110054N12Rik|5730507C05Rik|6330415C05Rik|AI482334|AW491331|Asf|Sf2|Sfrs1	serine/arginine-rich splicing factor 1	protein-coding	nan	1.402	0.887	nan	2.264	1.029	2.838	2.343	1.557	2.297	1.085	1.242	1.917	4.063	3.569	2.573	1.664	2.044	6.373	3.332	2.412	nan	5.970	4.897	nan
12884	chr6	148886481	148888880	+	0	NA	intron (NM_001301351, intron 3 of 17)	B3|SINE|B2	8557	NM_001301351	232560	Mm.150568	NM_181541	ENSMUSG00000030309	Caprin2	C1qdc1|Eeg1|rng140	caprin family member 2	protein-coding	2.170	1.303	0.430	nan	1.425	0.572	2.831	4.808	1.879	nan	0.602	0.464	4.666	4.401	5.593	6.488	5.892	2.563	0.759	nan	0.488	nan	0.392	0.210	2.352
5537	chr15	85797685	85807225	+	0	NA	3' UTR (NM_011144, exon 8 of 8)	3' UTR (NM_011144, exon 8 of 8)	9242	NM_001164626	72355	Mm.33706	NM_197998	ENSMUSG00000064284	Cdpf1	2210021J22Rik	cysteine rich, DPF motif domain containing 1	protein-coding	3.722	1.249	0.462	nan	2.251	1.294	5.119	6.334	nan	3.600	3.057	2.484	6.355	5.712	5.332	nan	nan	nan	nan	0.815	0.644	nan	1.024	0.834	6.684
12426	chr6	89248448	89251029	+	0	NA	Intergenic	Intergenic	-33559	NR_033190	330379	Mm.297741	NM_201356		Gm839	-	predicted gene 839	ncRNA	4.166	1.679	0.755	nan	1.019	0.763	1.576	1.483	1.516	2.741	0.328	0.681	2.646	2.749	3.009	3.805	2.055	3.188	nan	1.265	0.336	0.847	1.000	0.935	3.198
2272	chr11	60040459	60044661	+	0	NA	intron (NM_001290012, intron 1 of 6)	B2_Mm2|SINE|B2	-2372	NM_001290013	18618	Mm.2731	NM_008819	ENSMUSG00000000301	Pemt	PEAMT|PEMT2|PLMT|Pempt|Pempt2	phosphatidylethanolamine N-methyltransferase	protein-coding	3.612	0.834	0.537	4.744	2.452	1.188	5.661	7.635	3.519	4.855	2.680	2.157	6.152	7.552	8.396	8.220	4.269	6.705	nan	0.833	0.621	1.593	0.834	0.591	8.366
1889	chr11	3350406	3353596	+	0	NA	intron (NM_173053, intron 8 of 14)	B3|SINE|B2	4140	NM_001034030	16886	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	10.213	6.752	3.113	9.307	6.952	3.934	6.508	6.619	5.822	7.390	5.391	4.382	6.289	8.541	7.404	7.806	6.643	7.131	5.271	nan	3.024	4.762	4.886	4.163	9.235
8006	chr2	24773713	24775952	+	0	NA	Intergenic	B4|SINE|B4	-11680	NM_007579	12287	Mm.4424	NM_007579	ENSMUSG00000004113	Cacna1b	AW050276|AW060892|AW822256|BIII|Cav2.2|Cchn1a|alpha(1B)	calcium channel, voltage-dependent, N type, alpha 1B subunit	protein-coding	9.146	7.460	2.783	7.568	4.837	4.145	8.814	8.781	5.497	10.685	5.051	3.418	8.169	8.042	8.272	10.735	7.452	9.164	4.780	2.351	3.492	4.578	3.094	4.454	14.158
2692	chr11	95980193	95981428	+	0	NA	intron (NM_009951, intron 2 of 14)	intron (NM_009951, intron 2 of 14)	-17427	NR_037223	100526468		NR_037223	ENSMUSG00000093358	Mir3063	mmu-mir-3063	microRNA 3063	ncRNA	0.329	nan	0.497	0.470	0.753	0.120	0.273	0.530	0.333	0.566	0.166	0.159	0.090	0.252	0.134	0.373	nan	0.292	0.878	4.058	6.284	1.033	4.230	5.247	0.310
2646	chr11	94019817	94024465	+	0	NA	intron (NM_001199203, intron 2 of 29)	B3|SINE|B2	-22064	NM_001025430	70834	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	8.400	nan	0.471	7.689	2.992	1.375	8.441	11.784	4.602	5.080	2.388	4.192	8.044	8.866	7.139	11.452	6.771	6.648	8.036	nan	6.949	11.445	5.763	6.155	9.210
7414	chr18	79303842	79307185	+	0	NA	Intergenic	MTEa|LTR|ERVL-MaLR	-196122	NM_053099	240427	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	6.228	12.657	5.014	6.608	2.867	3.403	3.904	8.101	3.649	11.445	5.796	4.814	4.480	4.216	4.386	5.396	5.061	6.600	5.330	nan	3.753	4.586	4.111	6.975	12.587
11993	chr5	151060920	151069239	+	0	NA	intron (NM_146258, intron 4 of 13)	intron (NM_146258, intron 4 of 13)	112472	NM_013823	16591	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	1.161	0.998	0.516	nan	0.507	0.371	0.449	1.221	nan	0.692	0.405	0.804	0.225	0.454	0.574	nan	0.431	0.967	5.063	3.239	2.116	6.230	4.943	3.907	nan
8211	chr2	38022640	38025331	+	0	NA	intron (NM_146122, intron 8 of 21)	intron (NM_146122, intron 8 of 21)	247736	NM_001163566	241324	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	3.933	0.464	0.374	2.534	6.683	4.824	3.652	5.170	2.619	3.285	1.025	1.055	6.157	4.599	4.155	4.645	7.012	4.705	1.181	1.215	0.592	0.579	1.162	1.026	2.487
10	chr1	7386903	7388988	+	0	NA	Intergenic	Intergenic	299025	NM_183028	319263	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	8.162	6.527	5.696	4.912	5.176	5.006	7.142	4.500	3.472	5.323	3.251	3.129	5.600	5.272	4.814	7.814	9.712	4.104	2.174	2.302	4.835	2.718	1.863	3.243	7.420
4762	chr14	65246175	65257659	+	0	NA	intron (NM_021458, intron 2 of 6)	ID_B1|SINE|B4	10546	NM_021458	14365	Mm.214687	NM_021458	ENSMUSG00000007989	Fzd3	AU020229|D930050A07Rik|Fz3	frizzled class receptor 3	protein-coding	3.703	1.035	0.961	1.745	2.302	1.220	5.226	9.641	2.262	2.414	1.427	2.713	3.944	4.113	3.729	4.691	2.811	2.649	0.897	nan	0.781	0.652	0.624	0.631	3.181
12251	chr6	53979652	53982714	+	0	NA	intron (NR_110484, intron 1 of 3)	intron (NR_110484, intron 1 of 3)	2492	NR_110484	320178	Mm.320413	NR_110484	ENSMUSG00000108060	4921529L05Rik	-	RIKEN cDNA 4921529L05 gene	ncRNA	2.917	0.695	0.305	1.217	0.491	0.380	3.284	2.137	1.568	1.017	0.264	0.399	1.875	1.160	1.498	4.473	3.143	2.641	nan	0.333	0.250	0.862	0.589	0.480	2.441
5574	chr15	93166253	93167747	+	0	NA	Intergenic	Intergenic	108084	NM_001033275	223827	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	5.724	12.734	2.855	7.703	2.154	2.960	6.943	7.694	2.377	15.102	4.199	2.404	4.699	4.527	6.977	8.016	4.184	7.596	4.836	1.711	3.610	6.050	3.097	7.443	11.671
14136	chr8	35102315	35104735	+	0	NA	Intergenic	Intergenic	-137835	NM_175091	21951	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	9.085	0.892	0.216	3.582	5.988	4.328	11.025	11.204	4.116	4.246	2.480	1.974	7.647	8.614	6.687	6.842	6.919	6.944	0.789	0.886	0.982	0.674	1.075	0.827	8.109
1081	chr10	7456238	7457937	+	0	NA	exon (NM_029975, exon 2 of 6)	exon (NM_029975, exon 2 of 6)	16390	NM_029975	77777	Mm.442442	NM_029975	ENSMUSG00000079685	Ulbp1	A430108B07Rik|MULT1	UL16 binding protein 1	protein-coding	2.354	1.924	0.906	1.757	0.838	0.683	1.321	2.501	2.861	3.204	0.743	1.119	2.130	3.624	2.187	3.768	3.439	3.427	1.274	1.089	0.564	1.800	0.894	0.443	2.516
12502	chr6	94638796	94652484	+	0	NA	intron (NM_008377, intron 3 of 18)	intron (NM_008377, intron 3 of 18)	-39225	NR_106008	102466992		NR_106008	ENSMUSG00000098531	Mir7041	Gm27872|mmu-mir-7041	microRNA 7041	ncRNA	2.442	2.695	1.087	2.102	0.958	0.608	3.225	5.066	2.296	2.351	3.580	3.306	3.238	4.267	nan	nan	2.808	2.444	nan	nan	1.750	5.540	5.003	3.360	2.392
4769	chr14	65532658	65536593	+	0	NA	intron (NM_001253812, intron 14 of 14)	intron (NM_001253812, intron 14 of 14)	58487	NM_001253812	74195	Mm.29719	NM_028811	ENSMUSG00000022031	Elp3	2610507P14Rik|KAT9	elongator acetyltransferase complex subunit 3	protein-coding	6.162	2.330	2.282	4.731	3.577	3.266	4.017	4.361	2.808	2.765	2.294	1.676	2.464	4.206	3.889	3.628	2.873	4.222	1.016	nan	1.460	1.004	1.353	1.035	4.631
7666	chr19	24744038	24752476	+	0	NA	intron (NM_175013, intron 7 of 10)	intron (NM_175013, intron 7 of 10)	74249	NM_183160	226040	Mm.391170	NM_183160	ENSMUSG00000048572	Tmem252	E030010A14Rik	transmembrane protein 252	protein-coding	6.673	1.164	0.589	nan	4.517	3.430	3.928	10.763	6.267	8.387	7.441	1.236	4.508	7.612	2.679	3.614	3.177	5.425	nan	0.836	0.574	0.634	nan	0.497	3.873
12536	chr6	99213697	99218123	+	0	NA	intron (NM_001347345, intron 4 of 19)	intron (NM_001347345, intron 4 of 19)	50605	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	5.965	3.262	1.580	5.405	3.475	1.081	8.658	8.349	7.352	6.814	3.722	4.254	8.949	9.378	9.821	12.027	9.348	8.036	nan	nan	1.010	3.306	1.780	1.146	6.920
7340	chr18	65767972	65769877	+	0	NA	Intergenic	Intergenic	-31654	NM_025468	66286	Mm.27800	NM_025468	ENSMUSG00000024516	Sec11c	1810029G24Rik|Sec11l3	SEC11 homolog C, signal peptidase complex subunit	protein-coding	1.235	0.630	0.478	1.187	1.478	1.117	1.239	1.533	0.726	0.752	1.253	0.421	1.278	1.004	1.163	1.352	0.631	1.691	3.272	1.170	1.075	1.437	4.038	4.365	1.761
13278	chr7	73528034	73531771	+	0	NA	intron (NM_001081345, intron 2 of 38)	intron (NM_001081345, intron 2 of 38)	11844	NM_001081345	244059	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	5.022	10.637	7.260	4.689	8.865	4.363	5.986	6.023	4.901	5.856	2.661	3.142	6.237	8.657	5.926	nan	4.447	5.776	1.423	1.280	0.901	0.613	1.359	1.084	5.320
14936	chr9	31455457	31459786	+	0	NA	intron (NM_144936, intron 1 of 5)	MuRRS4-int|LTR|ERV1	6617	NM_144936	235135	Mm.390134	NM_144936	ENSMUSG00000041737	Tmem45b	BC018222	transmembrane protein 45b	protein-coding	0.314	3.304	1.931	0.355	0.177	0.038	0.141	0.309	0.348	0.350	7.812	2.721	0.166	0.245	0.283	nan	0.285	0.348	3.039	1.576	0.401	4.134	2.395	1.493	0.321
10839	chr4	141734913	141737477	+	0	NA	Intergenic	B3A|SINE|B2	-10480	NM_001081408	75986	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	5.625	1.260	0.893	4.031	2.646	2.904	5.803	4.920	3.354	3.278	2.669	2.076	3.886	4.774	4.099	5.264	3.691	3.835	2.480	1.892	2.545	2.772	nan	2.791	9.086
4111	chr13	49393560	49396073	+	0	NA	Intergenic	Intergenic	-26407	NR_075085	75678	Mm.390586	NM_199056	ENSMUSG00000021385	Ippk	1810043M15Rik|InsP6	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	protein-coding	7.567	3.402	1.765	3.122	2.877	1.962	5.962	8.113	2.916	2.746	5.909	3.585	4.555	4.729	4.482	4.457	4.404	5.157	1.165	nan	1.128	1.516	0.726	0.407	5.470
5445	chr15	79988285	79996496	+	0	NA	Intergenic	Intergenic	6636	NR_106072	102465699		NR_106072	ENSMUSG00000099222	Mir7213	Gm27377|mmu-mir-7213	microRNA 7213	ncRNA	nan	nan	0.302	nan	1.165	0.540	8.374	12.626	3.402	nan	nan	3.190	9.697	6.752	6.751	6.874	nan	4.888	4.537	1.396	1.757	6.015	3.228	2.237	4.251
12627	chr6	115751346	115754061	+	0	NA	intron (NM_001168256, intron 1 of 11)	B4|SINE|B4	6296	NM_144805	94346	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	1.992	1.083	0.656	1.269	2.142	1.525	4.256	5.857	1.605	1.737	0.753	0.714	2.748	3.390	3.129	5.340	4.855	2.559	2.664	1.618	2.282	2.972	nan	1.141	2.997
4903	chr14	84845598	84848435	+	0	NA	Intergenic	Intergenic	-370592	NR_015539	319903	Mm.440481	NR_015539		9630013A20Rik	-	RIKEN cDNA 9630013A20 gene	ncRNA	2.146	1.083	0.228	4.713	0.523	0.087	0.924	1.037	1.853	2.227	0.730	0.540	0.714	1.074	1.469	2.221	nan	3.632	0.522	0.328	0.259	1.196	0.293	0.271	3.967
11936	chr5	145115121	145118798	+	0	NA	intron (NM_023142, intron 1 of 9)	(TCCG)n|Simple_repeat|Simple_repeat	2703	NM_023142	11867	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	4.656	0.753	0.684	nan	4.651	3.917	5.134	6.661	5.787	6.934	3.351	3.861	7.383	9.650	7.561	6.639	4.928	6.549	3.216	2.069	1.588	2.678	3.509	3.442	nan
2364	chr11	69177870	69184736	+	0	NA	Intergenic	B3A|SINE|B2	16540	NM_009661	11688	Mm.289672	NM_009661	ENSMUSG00000020891	Alox8	15-LOX-2|15-LOX-B|8-LOX|8S-LOX|Alox15b	arachidonate 8-lipoxygenase	protein-coding	10.606	7.731	2.778	8.399	7.036	4.254	11.188	9.863	6.030	11.659	7.908	4.923	9.001	11.859	9.573	10.738	10.094	8.922	6.463	5.065	4.808	6.028	nan	5.673	nan
15353	chr9	82864616	82870307	+	0	NA	3' UTR (NM_001081216, exon 40 of 40)	3' UTR (NM_001081216, exon 40 of 40)	37655	NM_022986	65099	Mm.41415	NM_022986	ENSMUSG00000032251	Irak1bp1	4921528N06Rik|AI851240|Aabp3|Aip70|Simpl	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding	7.992	10.439	3.765	8.108	4.067	3.068	5.577	5.338	6.316	12.498	6.454	4.449	6.679	8.521	6.647	7.580	5.649	7.615	5.964	3.007	3.707	4.680	4.111	5.775	nan
173	chr1	52782591	52788985	+	0	NA	Intergenic	MYSERV16_I-int|LTR|ERVK	31900	NM_008384	16329	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	3.618	2.755	0.940	3.279	1.198	0.861	2.037	3.022	2.031	4.141	2.387	1.603	2.680	3.438	4.246	nan	2.428	nan	5.657	4.132	2.407	7.278	4.956	4.135	5.082
4118	chr13	51491740	51497390	+	0	NA	intron (NM_009167, intron 2 of 11)	intron (NM_009167, intron 2 of 11)	72519	NM_009167	20418	Mm.131870	NM_009167	ENSMUSG00000021448	Shc3	N-Shc|Rai|ShcC	src homology 2 domain-containing transforming protein C3	protein-coding	nan	10.161	5.276	nan	0.399	0.283	0.459	0.467	0.484	0.834	1.605	0.489	0.140	0.418	0.395	0.792	0.477	nan	0.650	nan	0.217	0.944	0.238	0.101	nan
13540	chr7	111362234	111369845	+	0	NA	Intergenic	Intergenic	-243364	NR_015573	75479	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	5.443	0.932	0.871	2.488	5.278	4.564	3.017	9.405	4.053	3.895	3.049	2.883	4.852	4.225	3.493	3.195	3.983	nan	nan	0.541	0.644	0.380	0.517	0.715	3.624
66	chr1	31089096	31093120	+	0	NA	intron (NR_136907, intron 1 of 3)	L1_Mus3|LINE|L1	5346	NR_136907	102634473	Mm.484482	NR_136907	ENSMUSG00000100371	Gm29669	-	predicted gene 29669	ncRNA	9.178	nan	0.440	3.369	5.209	4.015	4.562	6.845	5.197	5.835	2.161	2.278	6.993	6.883	4.729	6.934	7.463	6.057	0.893	0.898	0.683	1.748	0.492	0.494	3.035
2709	chr11	96789132	96797644	+	0	NA	intron (NM_007622, intron 1 of 5)	intron (NM_007622, intron 1 of 5)	4252	NM_007622	12412	Mm.29055	NM_007622	ENSMUSG00000018666	Cbx1	Cbx|Cbx-rs2|E430007M08Rik|HP1B|Hp1beta|M31|MOD1	chromobox 1	protein-coding	10.232	nan	0.445	8.822	7.653	6.146	11.120	10.349	8.326	11.440	6.266	3.673	11.605	13.813	9.559	11.754	9.582	10.140	5.670	nan	3.880	3.918	nan	nan	11.680
13889	chr7	148523073	148531257	+	0	NA	Intergenic	Intergenic	3212330	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	3.930	nan	0.622	nan	2.408	1.475	4.599	9.028	3.060	3.703	3.278	2.128	4.932	5.817	5.257	5.452	3.160	5.944	1.097	0.669	0.651	1.437	nan	0.819	nan
12762	chr6	134093530	134095325	+	0	NA	intron (NM_001303102, intron 2 of 8)	intron (NM_001303102, intron 2 of 8)	58727	NM_007961	14011	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	5.032	3.129	1.253	3.720	2.598	0.829	4.224	4.998	3.132	3.410	3.194	2.592	2.094	3.852	5.303	4.987	3.497	4.430	2.824	1.572	1.047	2.227	2.062	1.465	4.855
13952	chr7	151960416	151964276	+	0	NA	Intergenic	Intergenic	6647511	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	nan	nan	0.483	nan	1.839	1.007	4.515	3.860	2.973	3.087	2.530	1.882	3.193	4.189	4.354	3.992	1.787	5.337	0.650	0.689	0.528	0.373	nan	0.158	nan
10372	chr4	108784332	108792561	+	0	NA	Intergenic	PB1D11|SINE|Alu	-7358	NM_001347163	230597	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	8.801	5.331	2.458	7.735	8.248	3.782	5.384	5.891	6.767	8.325	4.389	2.685	7.919	11.624	7.302	8.296	6.055	9.117	2.682	2.710	1.552	2.800	1.983	1.087	7.180
3130	chr11	120951482	120952957	+	0	NA	intron (NM_001038654, intron 1 of 4)	intron (NM_001038654, intron 1 of 4)	3152	NM_001038654	80879	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	4.336	nan	1.737	1.303	2.081	1.872	2.221	1.803	1.560	2.046	2.581	1.239	5.112	4.764	2.551	2.998	2.542	2.678	0.975	nan	0.416	0.730	0.652	0.677	3.937
5272	chr15	66738893	66743441	+	0	NA	intron (NM_009375, intron 33 of 47)	MIRb|SINE|MIR	70397	NM_009375	21819	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	1.961	0.893	0.695	1.454	0.952	0.606	0.976	3.424	1.029	1.101	0.810	0.532	1.134	0.880	1.435	1.263	1.004	1.779	2.892	1.878	1.134	3.890	1.883	1.319	1.207
7673	chr19	26965406	26967466	+	0	NA	Intergenic	Intergenic	80511	NM_001033407	329047	Mm.293289	NM_001033407	ENSMUSG00000074913	Gm815	-	predicted gene 815	protein-coding	2.660	0.718	0.818	2.186	1.487	1.078	4.155	5.096	1.505	1.829	5.867	1.328	2.755	2.864	3.156	3.526	5.117	2.901	nan	0.457	0.714	0.376	nan	0.516	3.976
9723	chr3	116046500	116048638	+	0	NA	Intergenic	Intergenic	39272	NM_001163514	58193	Mm.41739	NM_021388	ENSMUSG00000027963	Extl2	3000001D04Rik|AW146439	exostoses (multiple)-like 2	protein-coding	0.560	0.877	0.244	1.283	0.653	0.059	0.628	0.492	0.688	nan	1.340	1.542	0.341	0.707	0.666	nan	0.592	0.996	6.422	1.301	0.715	1.199	5.436	4.045	nan
12247	chr6	53522201	53524318	+	0	NA	intron (NM_001327821, intron 5 of 10)	MTC|LTR|ERVL-MaLR	-50115	NM_172728	231991	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	5.567	2.410	1.571	4.178	5.037	1.619	2.011	3.456	2.941	3.236	5.972	4.368	2.069	4.247	4.002	3.761	2.887	3.094	nan	1.269	0.516	1.371	1.273	0.769	3.828
1696	chr10	104967845	104970412	+	0	NA	Intergenic	Intergenic	605351	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	1.829	0.332	0.301	1.130	0.225	0.078	3.664	4.663	3.295	1.384	0.753	1.498	3.871	1.619	2.586	3.337	3.745	3.317	0.936	0.434	0.470	0.613	0.937	0.353	1.237
3168	chr12	8502425	8509352	+	0	NA	Intergenic	Intergenic	-5903	NM_007483	11852	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	11.811	6.471	2.134	12.507	5.023	3.223	6.906	8.324	6.579	10.585	5.921	2.772	9.304	10.420	9.338	10.873	8.989	10.054	3.232	2.203	2.873	4.552	2.228	2.801	17.015
14278	chr8	71650565	71652877	+	0	NA	intron (NM_001029873, intron 19 of 41)	intron (NM_001029873, intron 19 of 41)	20036	NM_001029873	382018	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	1.370	0.365	0.754	1.216	1.270	1.218	0.769	1.527	1.120	1.112	0.502	0.215	1.580	2.304	1.584	2.537	3.662	1.290	nan	4.759	2.527	3.114	1.629	1.527	nan
9734	chr3	117563315	117573026	+	0	NA	Intergenic	Intergenic	-7057	NM_029425	75769	Mm.72187	NM_029425	ENSMUSG00000033342	Plppr5	4833424O15Rik|Lppr5|PRG-5|Pap2d	phospholipid phosphatase related 5	protein-coding	6.105	0.748	0.373	4.290	3.382	1.721	8.419	3.837	5.076	nan	2.205	1.939	9.056	8.047	6.889	nan	5.906	7.073	1.238	1.175	0.609	1.442	nan	0.795	nan
5486	chr15	81986507	81998937	+	0	NA	3' UTR (NM_134095, exon 6 of 6)	3' UTR (NM_134095, exon 6 of 6)	12182	NM_025503	66346	Mm.54292	NM_025503	ENSMUSG00000061633	1700029P11Rik	-	RIKEN cDNA 1700029P11 gene	protein-coding	3.969	12.639	6.784	3.587	2.294	1.373	nan	11.674	3.146	nan	nan	2.552	5.833	nan	7.061	5.726	6.723	4.956	1.151	1.520	1.054	nan	1.075	0.923	4.493
13929	chr7	150969234	150972010	+	0	NA	Intergenic	Intergenic	5655787	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	4.471	6.165	3.321	3.419	1.897	1.417	6.933	8.246	2.371	3.768	6.222	2.227	4.543	5.462	5.741	5.812	2.550	4.006	4.387	2.770	2.519	3.286	nan	4.824	5.339
9094	chr2	179767930	179771425	+	0	NA	intron (NM_001316723, intron 2 of 5)	intron (NM_001316723, intron 2 of 5)	206969	NM_001081092	228980	Mm.235542	NM_001081092	ENSMUSG00000039117	Taf4	135kDa|AI450312|TAFII130|TAFII135|Taf2c1|Taf4a	TATA-box binding protein associated factor 4	protein-coding	3.282	1.145	0.546	2.071	3.085	1.511	3.473	5.865	2.463	2.841	3.948	1.638	3.932	5.688	3.353	3.935	3.156	3.639	1.804	0.645	0.577	1.559	0.534	0.399	3.892
15803	chrX	106331847	106338912	+	0	NA	Intergenic	Intergenic	25553	NR_105803	102465963		NR_105803	ENSMUSG00000099128	Mir6382	Gm27319|mmu-mir-6382	microRNA 6382	ncRNA	3.681	1.571	1.040	3.764	2.763	1.493	2.578	2.704	3.338	3.687	2.299	2.026	3.589	3.552	2.657	2.863	2.611	3.737	1.183	0.910	0.526	0.740	0.420	0.297	1.434
3469	chr12	78185987	78187434	+	0	NA	Intergenic	Intergenic	-39945	NM_172952	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	6.094	4.698	2.344	1.481	2.048	1.007	6.751	6.855	3.003	2.761	3.493	4.225	8.737	5.844	8.688	7.915	7.659	4.634	2.224	1.647	0.261	2.285	1.479	1.319	4.379
5580	chr15	95620470	95626202	+	0	NA	TTS (NM_207533)	TTS (NM_207533)	31435	NM_207533	223843	Mm.152937	NM_207533	ENSMUSG00000045608	Dbx2	9430056A22Rik|9630005K15|AI846217|Gm1229	developing brain homeobox 2	protein-coding	7.353	9.770	3.991	7.986	2.543	1.379	4.117	4.172	4.451	6.225	2.701	2.060	4.764	5.775	6.358	6.256	4.825	6.734	2.395	1.720	1.069	2.042	1.426	1.219	7.615
6822	chr17	71334249	71344504	+	0	NA	intron (NR_028023, intron 2 of 2)	intron (NR_028023, intron 2 of 2)	2428	NR_028023	100043644	Mm.362377	NR_028023		Gm4566	-	ubiquitin specific peptidase 16 pseudogene	pseudo	8.385	5.503	2.504	7.798	6.363	3.809	8.165	7.058	nan	7.415	3.584	2.523	7.445	nan	8.605	10.835	8.265	9.130	2.688	1.771	1.993	2.264	2.105	1.823	11.678
59	chr1	23268296	23275436	+	0	NA	promoter-TSS (NR_029533)	promoter-TSS (NR_029533)	-403	NR_029533	387225		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	5.237	nan	0.411	3.093	3.115	1.663	3.472	2.738	3.753	3.053	1.854	1.615	5.260	4.294	3.312	5.066	6.878	4.906	1.326	0.987	0.643	0.634	0.817	0.509	2.256
4572	chr14	31422467	31432408	+	0	NA	intron (NM_011894, intron 2 of 8)	intron (NM_011894, intron 2 of 8)	8663	NM_011894	24056	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	3.529	11.196	4.135	3.215	1.717	0.662	1.836	4.816	1.897	2.626	1.267	0.832	2.082	3.683	3.031	3.602	nan	3.391	2.460	1.607	1.188	4.429	1.855	1.034	5.182
8345	chr2	72123334	72125799	+	0	NA	intron (NM_001204166, intron 1 of 27)	intron (NM_001204166, intron 1 of 27)	69949	NM_001204166	56508	Mm.196153	NM_019688	ENSMUSG00000049044	Rapgef4	1300003D15Rik|5730402K07Rik|6330581N18Rik|EPAC 2|Epac-2|Epac2|mKIAA4040	Rap guanine nucleotide exchange factor (GEF) 4	protein-coding	7.661	6.604	2.366	7.423	2.891	1.818	3.489	5.991	4.785	9.061	5.123	3.660	4.475	5.508	5.994	8.684	5.902	7.759	2.962	1.195	1.834	3.062	0.997	1.535	11.907
3388	chr12	70680026	70684630	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-143186	NM_028127	319710	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	6.614	5.710	2.386	4.491	2.999	1.405	4.916	4.069	6.155	8.717	3.279	2.671	8.637	8.233	7.476	9.781	8.429	7.334	2.416	1.582	1.533	2.517	1.508	1.576	10.333
4546	chr14	26192535	26193404	+	0	NA	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-10618	NM_001270503	100039246	Mm.425864	NM_001270503	ENSMUSG00000072674	Plac9b	ENSMUSG00000072674|Gm10393	placenta specific 9b	protein-coding	1.998	2.657	0.303	1.548	0.429		3.369	7.834	1.117	0.634	3.741	1.386	1.997	4.266	5.144	5.060	nan	1.721	0.926	0.498	0.362	1.771	0.789	0.422	4.155
10623	chr4	132118146	132120440	+	0	NA	intron (NM_013622, intron 1 of 2)	B1_Mm|SINE|Alu	25193	NM_013622	18386	Mm.5243	NM_013622	ENSMUSG00000050511	Oprd1	DOR|DOR-1|Nbor|mDOR	opioid receptor, delta 1	protein-coding	6.072	1.840	1.146	3.791	5.803	2.999	2.492	1.931	3.107	4.433	8.217	1.823	2.714	4.688	nan	2.066	2.315	2.951	0.988	3.715	2.085	1.055	1.370	1.291	3.594
5951	chr16	25848493	25850964	+	0	NA	intron (NM_001127259, intron 4 of 13)	intron (NM_001127259, intron 4 of 13)	47812	NM_001127264	22061	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	2.075	0.565	0.551	1.388	1.222	0.931	3.328	2.895	1.935	1.745	7.091	1.697	nan	4.538	2.710	3.618	2.002	2.025	0.551	0.294	0.540	1.283	nan	0.420	3.296
7461	chr19	3718627	3721744	+	0	NA	Intergenic	Intergenic	11852	NM_028077	72056	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	4.798	1.740	0.632	3.412	1.611	1.029	5.356	9.022	nan	2.816	2.045	1.469	4.115	4.706	5.391	6.120	6.279	5.190	0.836	1.000	0.645	2.378	0.904	0.648	8.040
14075	chr8	24277630	24278833	+	0	NA	Intergenic	Intergenic	160715	NM_026931	69068	Mm.25775	NM_026931	ENSMUSG00000056313	1810011O10Rik	1110065B09Rik|AW121743|AW321058	RIKEN cDNA 1810011O10 gene	protein-coding	9.031	1.150	0.544	4.246	5.156	1.665	13.422	16.478	5.134	6.512	7.234	4.140	10.304	14.751	9.011	9.317	3.825	6.626	7.315	9.409	4.994	11.176	9.308	6.495	8.563
9840	chr3	138188711	138190981	+	0	NA	Intergenic	Intergenic	-3133	NM_001163386	67741	Mm.383221	NM_001163385	ENSMUSG00000012042	4930579F01Rik	-	RIKEN cDNA 4930579F01 gene	protein-coding	7.487	10.120	3.161	8.659	4.171	3.442	nan	6.374	4.361	11.563	5.809	2.908	6.864	8.794	8.959	10.075	6.327	8.510	4.414	1.235	2.855	4.840	2.575	5.004	15.153
13475	chr7	106274430	106284893	+	0	NA	Intergenic	LTRIS2|LTR|ERV1	44867	NR_030720	668128	Mm.484022	NR_030720		Gm8989	EG668128|Gm21911	very large inducible GTPase 1 pseudogene	pseudo	8.143	8.151	4.842	6.335	4.753	3.318	5.889	6.931	5.323	5.790	2.277	1.907	6.876	7.257	6.939	7.544	6.490	7.449	nan	1.584	1.538	1.431	1.132	0.936	8.554
5316	chr15	74423686	74427572	+	0	NA	intron (NR_144499, intron 2 of 3)	intron (NR_144499, intron 2 of 3)	62017	NR_144499	102634630		NR_144499		Gm32168	-	predicted gene, 32168	ncRNA	nan	nan	0.641	nan	0.252		nan	1.016	0.574	nan	nan	3.271	0.330	nan	0.501	0.504	nan	0.380	0.945	0.312	0.315	nan	0.454	0.455	0.435
2358	chr11	68853122	68855262	+	0	NA	Intergenic	Intergenic	-1061	NM_023668	83431	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	5.309	10.389	4.097	8.087	2.724	0.962	2.590	4.815	3.849	4.535	4.019	1.943	4.441	6.843	7.235	7.462	4.607	5.623	3.579	1.942	1.187	5.611	nan	1.741	5.754
15439	chr9	102653430	102655354	+	0	NA	Intergenic	Intergenic	28096	NM_181394	69010	Mm.2000	NM_181394	ENSMUSG00000035048	Anapc13	1810004D07Rik|APC13|SWM1	anaphase promoting complex subunit 13	protein-coding	2.691	0.607	0.865	3.001	1.873	0.847	1.357	1.518	2.890	3.508	0.867	0.878	2.037	4.729	2.417	3.112	2.288	3.013	0.537	0.906	0.620	0.324	0.584	0.829	2.868
9099	chr2	179847552	179855713	+	0	NA	intron (NM_009867, intron 6 of 15)	intron (NM_009867, intron 6 of 15)	125014	NM_001081092	228980	Mm.235542	NM_001081092	ENSMUSG00000039117	Taf4	135kDa|AI450312|TAFII130|TAFII135|Taf2c1|Taf4a	TATA-box binding protein associated factor 4	protein-coding	5.318	2.700	0.709	7.634	2.916	2.031	6.370	8.153	3.500	4.954	2.831	2.382	7.358	7.813	7.227	9.110	5.398	6.862	3.065	1.600	2.297	5.790	1.941	1.872	10.303
2498	chr11	77594163	77606798	+	0	NA	intron (NM_144825, intron 1 of 19)	intron (NM_144825, intron 1 of 19)	7335	NM_144825	216965	Mm.340436	NM_144825	ENSMUSG00000017291	Taok1	2810468K05Rik|AU020252|D130018F14Rik|Map3k16|Markk|Psk2|mKIAA1361	TAO kinase 1	protein-coding	8.757	2.564	0.882	9.021	6.538	4.545	10.247	8.734	7.042	8.523	6.780	4.106	9.230	12.204	9.425	10.136	6.193	9.897	1.782	1.110	nan	1.921	1.192	1.031	10.874
2247	chr11	58781400	58785184	+	0	NA	Intergenic	Intergenic	-2847	NM_001011760	257917	Mm.377302	NM_001011760	ENSMUSG00000059504	Olfr314	MOR278-2	olfactory receptor 314	protein-coding	2.819	0.721	0.418	3.257	1.585	0.958	2.356	4.252	2.461	3.581	0.723	0.342	2.874	5.560	4.180	5.458	3.146	4.104	nan	0.463	0.398	0.902	1.655	0.991	5.925
5739	chr15	103126768	103139606	+	0	NA	intron (NR_045743, intron 3 of 6)	intron (NR_045743, intron 3 of 6)	13641	NR_045743	432989	Mm.383979	NR_045743	ENSMUSG00000097003	D930007P13Rik	-	Riken cDNA D930007P13 gene	ncRNA	5.204	nan	1.008	3.207	1.685	0.972	6.491	4.235	nan	3.646	1.321	0.780	5.958	5.991	5.815	6.935	5.612	5.411	1.860	1.149	1.156	2.744	1.825	1.447	6.723
12393	chr6	86726016	86727521	+	0	NA	intron (NM_011818, intron 1 of 13)	intron (NM_011818, intron 1 of 13)	6610	NM_011818	23885	Mm.321452	NM_011818	ENSMUSG00000001157	Gmcl1	2810049L19Rik|Btbd13|DIP|Gcl|Gcl-1|glc-1|mglc-1	germ cell-less, spermatogenesis associated 1	protein-coding	4.792	1.055	0.737	4.245	3.788	4.722	6.036	7.773	5.519	3.224	3.803	4.413	4.742	7.175	5.978	6.447	3.735	4.997	4.396	1.502	2.499	3.452	3.815	4.338	4.400
219	chr1	59635305	59639050	+	0	NA	Intergenic	B1_Mm|SINE|Alu	33657	NM_009460	22218	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	5.276	0.813	0.450	2.716	2.629	1.439	4.911	2.944	3.480	3.713	1.495	1.088	6.296	5.800	5.249	8.379	6.652	5.224	0.881	0.799	0.388	0.792	0.411	0.352	6.396
1016	chr1	191550443	191553464	+	0	NA	intron (NM_029766, intron 11 of 14)	intron (NM_029766, intron 11 of 14)	23591	NM_001305233	76843	Mm.189102	NM_029766	ENSMUSG00000037474	Dtl	2810047L02Rik|5730564G15Rik|L2dtl|Ramp	denticleless E3 ubiquitin protein ligase	protein-coding	7.995	2.144	0.735	6.599	2.329	1.114	6.126	5.934	3.595	6.721	5.825	2.921	6.803	6.589	6.612	10.496	6.594	7.801	1.709	1.040	1.018	1.688	2.442	2.287	11.974
4958	chr14	119112708	119114619	+	0	NA	Intergenic	Intergenic	-14229	NM_001081252	66435	Mm.213406	NM_025561	ENSMUSG00000042104	Uggt2	1810064L21Rik|3110001A05Rik|3110027P15Rik|A230065J02Rik|AW047562|Ugcgl2	UDP-glucose glycoprotein glucosyltransferase 2	protein-coding	3.331	0.660	0.351	2.501	1.261	0.318	1.629	4.022	1.559	1.798	3.888	3.195	2.305	3.402	3.350	3.881	1.618	1.914	0.825	0.423	0.312	0.772	0.487	0.159	5.171
14166	chr8	37739602	37744383	+	0	NA	intron (NM_145841, intron 2 of 7)	intron (NM_145841, intron 2 of 7)	510210	NR_029884	723860		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA	6.288	0.828	0.309	5.432	4.541	2.405	4.792	4.103	4.384	5.914	2.023	0.757	8.361	6.885	5.602	7.382	5.602	5.942	0.454	1.000	0.589	1.174	0.344	0.299	5.670
10151	chr4	62176079	62181839	+	0	NA	Intergenic	Lx5|LINE|L1	-28118	NM_001009550	381531	Mm.472122	NM_001009550	ENSMUSG00000066153	Mup21	Gm11208|Mup|Mup26|OTTMUSG00000000231|bM64F17.1|bM64F17.4	major urinary protein 21	protein-coding	16.578	14.445	5.441	10.866	3.974	2.011	9.653	14.380	12.284	15.955	10.571	4.907	10.921	12.405	10.056	16.543	12.699	25.019	nan	4.107	2.483	6.926	5.530	4.314	22.466
13882	chr7	148226719	148230539	+	0	NA	Intergenic	Intergenic	2913794	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	nan	1.543	0.808	3.368	0.930	0.607	1.816	1.863	nan	1.901	5.330	2.605	1.462	1.369	1.927	2.224	1.307	2.076	5.007	2.065	2.663	6.765	4.177	3.888	nan
3734	chr12	112276701	112278547	+	0	NA	Intergenic	Intergenic	131416	NM_001097621	668303	Mm.313104	NM_001097621	ENSMUSG00000021294	Kif26a	mKIAA1236	kinesin family member 26A	protein-coding	10.721	19.382	5.323	nan	5.200	6.754	13.257	9.668	nan	20.267	8.026	5.770	11.107	11.124	13.472	14.018	8.601	13.310	5.963	2.174	7.261	8.689	3.972	9.251	26.234
10588	chr4	130280954	130284128	+	0	NA	Intergenic	RSINE1|SINE|B4	-6955	NM_172702	230779	Mm.45132	NM_172702	ENSMUSG00000023232	Serinc2	2310004K20Rik|AW121759|FKSG84|TDE2|Tde2l	serine incorporator 2	protein-coding	1.434	0.927	1.037	1.570	1.113	0.844	1.128	1.427	1.284	1.545	0.899	0.802	1.202	1.512	nan	1.854	1.190	1.950	6.035	3.708	1.961	4.250	6.503	4.208	1.171
390	chr1	88329184	88341055	+	0	NA	intron (NM_134252, intron 9 of 26)	intron (NM_134252, intron 9 of 26)	28407	NM_134252	171382	Mm.218753	NM_134252	ENSMUSG00000036251	Trpm8	CMR1|LTRPC6|LTrpC-6|TRPP8|Trp-p8	transient receptor potential cation channel, subfamily M, member 8	protein-coding	8.229	10.967	4.313	8.923	5.384	3.438	7.961	6.178	5.555	8.570	6.190	3.633	7.196	9.076	7.942	10.703	7.190	7.618	6.603	4.651	4.434	9.250	6.054	5.358	9.737
5319	chr15	74539371	74541140	+	0	NA	intron (NM_174991, intron 5 of 30)	intron (NM_174991, intron 5 of 30)	24059	NM_174991	107831	Mm.43133	NM_174991	ENSMUSG00000034730	Adgrb1	B830018M07Rik|Bai1|R75078|mKIAA4089	adhesion G protein-coupled receptor B1	protein-coding	6.447	nan	3.029	nan	1.704	1.042	10.087	10.292	4.635	5.780	6.784	4.355	9.789	6.920	9.398	8.287	5.785	7.677	4.536	2.062	1.599	nan	3.138	3.003	10.145
13120	chr7	31893974	31902238	+	0	NA	Intergenic	Intergenic	185441	NM_001270542	626305	Mm.454021	NM_001270542	ENSMUSG00000078759	Scgb1b7	ABPA7_A29|Abpa29|Abpa7|EG626305|Gm6662	secretoglobin, family 1B, member 7	protein-coding	3.912	2.136	1.154	2.722	2.592	1.553	4.553	8.216	2.058	3.308	1.448	1.463	3.344	4.468	3.745	3.755	2.699	3.768	0.967	1.183	0.847	1.327	1.030	0.937	5.323
1515	chr10	80755512	80758132	+	0	NA	intron (NM_199322, intron 1 of 27)	intron (NM_199322, intron 1 of 27)	1616	NM_199322	208266	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	5.314	12.386	3.614	7.387	2.076	1.253	2.332	3.628	3.048	6.688	3.485	2.027	2.591	4.326	4.891	5.768	2.610	5.008	nan	1.516	1.995	3.307	1.317	1.584	8.530
14861	chr9	14011022	14012678	+	0	NA	Intergenic	Intergenic	184123	NM_176836	72826	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	3.801	0.689	0.553	1.831	1.189	0.570	3.420	3.210	2.661	2.913	1.390	1.187	3.182	4.423	3.565	5.246	3.449	3.654	0.967	0.614	0.280	0.655	2.030	0.487	4.502
13795	chr7	136547845	136552296	+	0	NA	Intergenic	MER2|DNA|TcMar-Tigger	160534	NR_046021	621677	Mm.207290	NR_046021	ENSMUSG00000110101	Gm6249	EG621677	predicted gene 6249	ncRNA	0.669	nan	0.486	0.452	0.254	0.106	0.403	0.412	nan	0.544	0.248	0.117	0.209	0.692	0.710	0.596	0.551	0.727	4.470	4.199	2.910	5.937	6.260	4.754	0.558
9757	chr3	121615840	121620456	+	0	NA	Intergenic	Intergenic	25337	NR_036456	100503044	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	3.208	1.363	1.034	5.652	2.494	1.865	1.734	1.034	2.579	nan	0.893	0.925	0.696	1.514	1.241	1.953	1.750	3.262	0.622	1.251	1.381	1.515	nan	0.415	2.040
9218	chr3	30988200	30989626	+	0	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-6858	NM_008857	18759	Mm.291554	NM_008857	ENSMUSG00000037643	Prkci	2310021H13Rik|AI427505|PKClambda|Pkci|Pkcl|Prkcl|aPKClambda|mKIAA4165	protein kinase C, iota	protein-coding	2.396	5.163	4.599	1.627	1.512	1.072	5.930	3.368	2.561	1.795	1.384	2.303	5.043	3.628	nan	2.881	2.422	nan	0.772	1.316	1.365	0.681	1.019	0.769	1.668
14797	chr8	128517880	128529366	+	0	NA	Intergenic	B3A|SINE|B2	-162031	NM_010578	16412	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|ENSMUSG00000051907|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	3.618	nan	0.261	nan	1.714	1.054	nan	6.058	3.611	4.673	1.784	1.584	4.232	4.590	nan	6.487	3.965	nan	nan	3.799	2.565	9.623	4.737	nan	6.569
13194	chr7	52925679	52929477	+	0	NA	Intergenic	L1Md_T|LINE|L1	-911862	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	0.783	0.572	0.466	0.745	0.503	0.379	1.381	1.626	0.891	0.762	0.621	1.032	0.712	0.925	1.512	1.034	0.820	1.324	3.084	2.219	1.498	4.699	1.503	0.932	0.899
9533	chr3	95325425	95328178	+	0	NA	intron (NM_001163641, intron 16 of 21)	B1_Mus1|SINE|Alu	7971	NM_001320492	76893	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	5.709	4.820	2.492	2.682	2.011	1.662	2.266	1.424	2.210	2.649	1.794	1.184	1.779	2.654	1.473	nan	1.948	2.545	1.090	1.039	1.359	0.491	0.855	0.386	3.207
12705	chr6	125361640	125365593	+	0	NA	exon (NM_198604, exon 16 of 17)	exon (NM_198604, exon 16 of 17)	13893	NM_011609	21937	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	2.453	nan	0.644	1.108	3.414	2.526	4.553	5.285	2.839	1.835	1.637	4.916	3.475	2.150	2.782	4.673	3.049	2.598	1.123	1.610	1.433	1.226	1.253	1.263	1.530
9619	chr3	101761555	101762989	+	0	NA	Intergenic	Intergenic	73951	NM_172295	242125	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	3.192	0.700	0.240	1.374	1.873	0.663	4.497	5.684	1.971	2.564	3.343	1.236	6.152	4.330	3.154	3.829	3.481	2.805	1.189	0.640	0.651	1.301	1.317	1.111	1.481
945	chr1	182351354	182354444	+	0	NA	Intergenic	Intergenic	-11293	NM_175127	67948	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	5.159	7.709	2.738	6.018	5.123	2.195	1.588	2.058	2.601	4.044	0.921	0.460	1.218	5.379	4.400	6.757	1.987	5.552	0.625	1.061	0.477	1.912	0.394	0.314	7.115
14824	chr8	129430423	129439442	+	0	NA	Intergenic	Intergenic	171302	NR_144501	102635552		NM_001346808		Gm32856	-	predicted gene, 32856	protein-coding	5.013	nan	1.214	nan	6.294	4.402	nan	9.403	5.353	7.510	6.895	3.072	6.741	9.739	nan	6.911	5.305	nan	nan	2.390	2.328	nan	2.948	nan	nan
8805	chr2	151834728	151838599	+	0	NA	Intergenic	L1MD2|LINE|L1	-6264	NM_001040689	228770	Mm.159868	NM_001040689	ENSMUSG00000032852	Rspo4	A730099F22|A930029K19Rik	R-spondin 4	protein-coding	3.576	0.880	0.324	2.101	1.252	0.660	1.949	6.802	2.213	1.799	1.223	0.867	4.116	3.256	3.207	6.709	3.387	3.284	nan	0.685	0.380	0.650	0.229	0.311	2.839
5153	chr15	39028765	39030722	+	0	NA	intron (NM_001162494, intron 3 of 6)	RSINE1|SINE|B4	23410	NM_008056	14368	Mm.4769	NM_008056	ENSMUSG00000022297	Fzd6	Fz6	frizzled class receptor 6	protein-coding	0.647	1.509	0.266	1.731	0.143	0.202	0.381	0.327	0.361	1.159	0.167	0.200	0.198	0.232	0.691	0.564	0.846	4.563	8.302	2.203	4.825	11.070	4.945	10.559	1.098
5543	chr15	85904499	85906650	+	0	NA	intron (NM_009886, intron 26 of 34)	intron (NM_009886, intron 26 of 34)	26247	NM_028063	72026	Mm.158211	NM_028063	ENSMUSG00000022386	Trmu	1110005N20Rik|1600025P05Rik|AI314320|Trmt1	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	protein-coding	3.424	2.883	1.245	nan	2.387	1.666	6.912	10.535	2.612	3.406	2.615	2.217	6.170	4.433	nan	4.414	5.709	4.802	nan	1.258	0.750	nan	0.466	0.537	4.608
9629	chr3	103635547	103640654	+	0	NA	intron (NM_001276680, intron 4 of 4)	B3A|SINE|B2	7968	NM_174875	666468	Mm.102230	NM_174875	ENSMUSG00000079418	Atg4a	AI627006|AV169859|Apg4a|Atg4al|Autl2	autophagy related 4A, cysteine peptidase	protein-coding	2.608	1.568	1.006	1.790	2.220	1.666	3.670	2.598	1.843	1.478	2.957	1.726	3.346	4.691	4.683	2.608	3.780	2.644	0.782	0.787	0.640	0.571	0.465	0.352	2.067
959	chr1	182939342	182941532	+	0	NA	Intergenic	Intergenic	-14351	NM_016928	53791	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	7.095	1.784	0.683	4.014	2.607	1.533	3.326	7.670	2.772	3.486	3.020	2.725	4.459	5.389	2.470	8.194	2.699	4.365	1.788	1.282	1.431	3.780	1.041	0.839	6.277
15727	chrX	50264952	50266934	+	0	NA	Intergenic	Lx5|LINE|L1	160551	NM_146292	258289	Mm.451653	NM_146292	ENSMUSG00000048173	Olfr1324	MOR128-2	olfactory receptor 1324	protein-coding	4.633	10.059	4.712	5.154	3.150	1.248	3.089	3.227	2.689	3.371	2.999	2.551	2.877	3.574	4.356	5.169	3.128	4.784	3.590	3.653	2.228	4.440	4.242	3.290	6.217
3194	chr12	15806853	15808345	+	0	NA	intron (NM_144551, intron 2 of 2)	intron (NM_144551, intron 2 of 2)	-6498	NR_105809	102465204		NR_105809	ENSMUSG00000098480	Mir6387	Gm27281|mmu-mir-6387	microRNA 6387	ncRNA	5.621	2.581	0.485	3.607	2.090	0.384	7.832	2.607	2.802	2.305	3.022	2.982	3.013	3.798	4.991	5.424	2.614	3.880	2.151	0.950	1.129	2.435	0.909	0.688	6.504
13048	chr7	28375715	28377479	+	0	NA	TTS (NM_011756)	TTS (NM_011756)	2631	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	13.952	12.092	6.812	12.534	13.146	9.981	12.647	13.772	9.210	15.800	8.790	5.075	12.681	15.020	9.759	10.528	11.492	11.447	7.530	6.507	6.154	6.923	9.162	11.826	16.441
4917	chr14	100249392	100250527	+	0	NA	Intergenic	IAPEz-int|LTR|ERVK	-100163	NM_010636	16597	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	4.030	nan	0.464	3.357	1.923	0.645	2.786	2.496	6.090	4.706	0.421	1.703	4.028	3.479	3.161	6.291	3.251	6.009	0.577	0.779	0.531	0.770	0.666	0.514	5.187
7827	chr19	46540156	46542344	+	0	NA	intron (NM_019718, intron 5 of 5)	intron (NM_019718, intron 5 of 5)	31835	NM_019718	56350	Mm.22085	NM_019718	ENSMUSG00000025035	Arl3	-	ADP-ribosylation factor-like 3	protein-coding	2.502	14.590	7.352	nan	2.207	2.058	1.772	3.643	2.367	3.109	2.002	1.338	1.385	2.650	2.883	2.651	1.931	nan	0.670	1.391	1.305	1.279	0.942	0.723	2.496
15697	chrX	20538465	20539678	+	0	NA	Intergenic	Intergenic	-10747	NM_009060	19733	Mm.2118	NM_009060	ENSMUSG00000023070	Rgn	AI265316|GNL|SMP30	regucalcin	protein-coding	4.599	5.266	2.212	4.173	1.919	1.661	3.019	3.476	2.336	2.868	3.286	1.442	2.296	4.504	3.366	4.491	3.706	3.579	2.720	2.515	1.746	2.570	3.334	1.824	4.774
11142	chr5	33194583	33197566	+	0	NA	Intergenic	(TCTA)n|Simple_repeat|Simple_repeat	22164	NM_133903	100689	Mm.34694	NM_133903	ENSMUSG00000037379	Spon2	2310045I24Rik|AI504350|M-spondin|Mindin|Mspondin	spondin 2, extracellular matrix protein	protein-coding	7.539	8.563	4.058	6.103	4.064	2.561	5.449	5.904	4.852	6.214	5.175	2.705	4.268	6.484	6.666	7.074	5.457	6.753	4.998	2.753	3.032	6.036	4.163	3.538	7.306
8963	chr2	164335365	164341056	+	0	NA	Intergenic	Lx9|LINE|L1	5445	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	3.663	0.608	0.422	3.148	2.632	1.494	3.794	5.303	1.611	1.638	2.215	2.708	2.832	nan	2.570	3.581	2.757	nan	nan	0.800	0.703	1.130	1.107	0.657	nan
737	chr1	153357751	153359149	+	0	NA	Intergenic	MLT1J|LTR|ERVL-MaLR	-25664	NM_010683	226519	Mm.1249	NM_010683	ENSMUSG00000026478	Lamc1	Lamb2	laminin, gamma 1	protein-coding	4.601	0.589	0.746	3.388	4.566	2.634	3.860	2.213	nan	2.876	1.274	0.635	2.986	4.438	1.607	nan	2.867	1.359	nan	1.362	0.647	0.454	nan	0.819	1.088
5284	chr15	72312234	72317680	+	0	NA	Intergenic	Intergenic	231322	NM_001033876	223604	Mm.386856	NM_001033876	ENSMUSG00000036760	Kcnk9	Task3	potassium channel, subfamily K, member 9	protein-coding	nan	0.524	0.364	0.316	0.173	0.084	5.451	7.801	0.937	0.662	0.964	0.172	1.705	2.613	4.457	2.118	2.078	1.405	1.562	0.852	0.562	0.981	1.052	1.050	0.457
4338	chr13	101420514	101421803	+	0	NA	Intergenic	Intergenic	-23578	NR_046187	78136	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA	9.539	17.916	6.344	12.676	5.126	3.225	7.704	8.011	6.501	14.034	9.139	4.306	7.173	11.162	9.598	10.810	5.317	9.596	5.349	3.193	3.666	8.105	3.387	4.787	18.333
3037	chr11	117402085	117403699	+	0	NA	Intergenic	Intergenic	-11497	NR_132097	105827746	Mm.388009	NR_132097	ENSMUSG00000086588	Gm11729	OTTMUSG00000003784	predicted gene 11729	ncRNA	0.844	nan	0.465	1.150	1.393	0.901	nan	nan	0.697	nan	0.728	0.627	0.344	0.501	0.605	0.976	0.578	nan	6.632	5.741	5.139	7.004	5.630	5.585	1.004
5099	chr15	33977883	33979446	+	0	NA	Intergenic	L1VL1|LINE|L1	-104055	NM_026002	67154	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	2.721	2.221	1.339	2.498	3.416	3.294	2.293	2.384	1.985	1.853	1.048	0.568	2.600	4.072	2.625	2.641	2.979	2.995	0.830	1.102	1.420	nan	0.393	0.627	nan
15330	chr9	77782905	77795003	+	0	NA	intron (NM_010295, intron 12 of 15)	intron (NM_010295, intron 12 of 15)	34419	NM_010295	14629	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	5.490	1.104	0.659	4.215	4.181	2.083	4.475	6.864	4.173	5.703	2.741	1.458	4.319	7.970	4.627	5.467	3.840	6.075	1.356	nan	1.033	1.805	1.146	0.898	nan
7161	chr18	36850965	36870975	+	0	NA	Intergenic	L1Md_T|LINE|L1	59207	NR_027885	378472	Mm.482379	NR_027885		Vaultrc5	Gm22653|Mvg1	vault RNA component 5	ncRNA	8.149	1.221	0.824	3.525	5.355	4.657	8.706	10.669	4.274	3.685	3.432	4.398	8.007	nan	5.846	nan	7.328	5.697	1.200	1.521	1.281	0.977	1.488	1.466	5.734
9531	chr3	95129220	95130406	+	0	NA	TTS (NM_001163573)	TTS (NM_001163573)	4199	NM_027013	69269	Mm.182944	NM_027013	ENSMUSG00000092607	Scnm1	3110001I17Rik|Scnm1-ps	sodium channel modifier 1	protein-coding	1.916	0.923	0.422	1.683	2.424	1.346	2.260	2.934	1.880	1.763	nan	1.200	3.240	3.540	2.194	2.528	2.139	1.974	0.617	0.545	0.395	0.264	0.592	0.241	2.075
7465	chr19	3878629	3885848	+	0	NA	intron (NR_073190, intron 4 of 12)	intron (NR_073190, intron 4 of 12)	22992	NM_016921	27060	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	5.153	1.109	0.868	2.714	2.621	1.711	3.713	4.530	nan	3.178	2.758	0.844	2.702	4.505	3.403	4.374	5.036	4.012	0.898	1.251	0.872	1.010	1.299	0.815	4.476
15335	chr9	77955250	77958664	+	0	NA	intron (NM_134255, intron 1 of 7)	intron (NM_134255, intron 1 of 7)	39592	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	8.433	7.810	1.929	9.085	2.419	1.476	6.872	8.190	5.901	10.274	5.075	2.845	7.835	9.840	9.203	11.200	5.383	9.035	3.458	nan	1.482	3.677	1.856	1.826	13.658
5366	chr15	76631490	76633952	+	0	NA	intron (NM_183091, intron 17 of 25)	intron (NM_183091, intron 17 of 25)	-6637	NM_001305668	66914	Mm.30028	NM_025842	ENSMUSG00000059323	Vps28	1110014J03Rik|CIIA|D730005C08Rik	vacuolar protein sorting 28	protein-coding	7.479	nan	2.083	nan	2.260	1.587	6.765	5.221	1.668	nan	nan	1.020	3.578	4.603	5.042	3.509	4.462	2.626	0.686	2.029	1.533	nan	0.968	0.851	4.827
3830	chr13	6190864	6194122	+	0	NA	Intergenic	Intergenic	331004	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	9.504	1.238	0.867	3.713	6.572	3.897	6.012	5.310	4.338	3.889	11.397	5.511	5.855	6.417	5.513	5.808	3.922	4.975	2.465	3.144	1.569	4.634	4.486	4.052	5.861
6131	chr16	55783035	55785406	+	0	NA	Intergenic	L1MB3|LINE|L1	37918	NM_001159394	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.838	1.279	0.992	1.085	0.817	0.324	0.640	0.742	0.802	0.796	5.833	4.707	0.148	0.558	0.604	nan	0.770	0.903	nan	0.806	0.557	0.622	0.936	0.648	0.607
12586	chr6	113291198	113295420	+	0	NA	intron (NM_170673, intron 13 of 19)	intron (NM_170673, intron 13 of 19)	11002	NM_170673	211232	Mm.65597	NM_170673	ENSMUSG00000030270	Cpne9	A730016F12Rik|mKIAA4217	copine family member IX	protein-coding	8.203	2.031	0.622	7.132	3.458	1.606	7.251	7.025	4.689	6.849	2.395	1.883	5.107	9.123	8.045	10.597	5.332	7.243	1.777	2.844	1.812	2.554	nan	1.132	9.471
9934	chr4	11001600	11003696	+	0	NA	intron (NM_175175, intron 1 of 1)	ID_B1|SINE|B4	4971	NM_175175	71801	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	3.702	3.490	1.049	3.465	0.785	0.326	2.502	2.335	2.192	3.883	1.470	0.931	3.877	3.133	4.129	4.408	2.491	3.882	2.385	nan	1.001	2.127	1.527	1.973	7.269
220	chr1	59786347	59788236	+	0	NA	intron (NM_007561, intron 1 of 12)	intron (NM_007561, intron 1 of 12)	23012	NM_007561	12168	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	10.213	0.488	0.485	3.007	2.677	2.352	4.743	3.821	3.383	3.924	2.819	1.236	5.657	4.828	4.878	5.881	5.471	4.684	0.799	1.030	1.152	1.364	0.848	0.778	5.000
15843	chrX	148435588	148438028	+	0	NA	intron (NM_011022, intron 4 of 6).3	intron (NM_011022, intron 4 of 6).3	-52141	NM_001082966	100034729	Mm.422946	NM_001082966	ENSMUSG00000079395	Gm15114	OTTMUSG00000019010|Ott-like	predicted gene 15114	protein-coding	4.327	2.429	0.585	3.079	2.080	0.454	2.896	4.030	2.867	3.840	2.035	1.343	3.262	5.538	3.838	5.188	2.548	3.385	1.174	0.837	0.452	1.507	0.913	0.471	3.758
7283	chr18	60744531	60745954	+	0	NA	Intergenic	Intergenic	-29354	NM_020600	20044	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	2.883	nan	0.500	nan	2.590	2.090	2.336	nan	1.556	2.365	0.537	0.633	2.413	3.962	0.960	1.375	2.250	nan	nan	0.605	0.955	nan	1.522	1.397	2.200
8592	chr2	119957025	119961446	+	0	NA	intron (NM_001164274, intron 19 of 22)	B3A|SINE|B2	-13464	NM_011941	26390	Mm.330501	NM_011941	ENSMUSG00000033902	Mapkbp1	2810483F24Rik|AW123212|JNKBP-1|Jnkbp1|mKIAA0596	mitogen-activated protein kinase binding protein 1	protein-coding	4.597	4.574	2.514	3.808	1.673	0.724	1.836	1.558	2.780	2.580	1.724	1.181	nan	3.752	4.244	4.651	3.030	5.902	0.858	0.902	0.444	0.834	0.496	0.360	4.847
9492	chr3	90340126	90345368	+	0	NA	intron (NM_139304, intron 1 of 9)	B1_Mus1|SINE|Alu	1093	NM_139304	229542	Mm.270999	NM_139304	ENSMUSG00000042390	Gatad2b	AL118180|C430014D17Rik|P66beta|mKIAA1150	GATA zinc finger domain containing 2B	protein-coding	4.443	1.073	0.819	5.800	5.161	2.261	7.240	5.689	3.496	4.283	6.632	3.368	4.998	8.261	5.298	5.002	3.702	5.248	8.011	3.839	2.415	5.518	6.309	4.281	5.718
6065	chr16	38636266	38637357	+	0	NA	intron (NM_020260, intron 3 of 11)	intron (NM_020260, intron 3 of 11)	73997	NM_026407	67846	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	5.083	2.396	0.516	2.712	2.158	1.379	0.730	2.275	2.148	4.278	0.839	1.827	2.818	4.536	4.010	6.313	1.664	5.709	0.522	1.278	0.658	1.702	1.225	0.552	4.810
6882	chr17	80293818	80295735	+	0	NA	intron (NM_194269, intron 3 of 4)	intron (NM_194269, intron 3 of 4)	-4300	NM_001163759	106794	Mm.12412	NM_198942	ENSMUSG00000035051	Dhx57	AW494914	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	protein-coding	6.962	12.754	4.165	10.432	5.331	5.051	11.456	8.094	nan	14.846	6.794	2.800	7.354	9.345	9.694	12.673	8.003	8.736	4.973	2.356	3.876	5.558	3.848	4.837	16.632
12710	chr6	125478002	125479524	+	0	NA	intron (NM_007657, intron 1 of 7)	intron (NM_007657, intron 1 of 7)	15992	NM_007657	12527	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	2.971	nan	0.509	2.058	1.513	1.025	1.434	1.778	1.320	1.717	1.098	0.533	0.920	1.483	1.695	nan	1.354	1.797	3.808	1.727	2.001	1.768	5.403	4.020	2.209
14389	chr8	85000543	85001966	+	0	NA	intron (NM_001167991, intron 18 of 21)	intron (NM_001167991, intron 18 of 21)	10659	NM_001167991	170833	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	3.067	0.668	1.261	0.890	2.867	1.695	3.118	3.258	nan	1.721	2.368	0.610	6.090	3.973	3.477	2.701	3.062	1.890	nan	0.600	0.608	0.624	0.669	0.403	1.721
5386	chr15	77705939	77707365	+	0	NA	intron (NM_001134802, intron 1 of 4)	LTRIS_Mus|LTR|ERV1	7763	NM_001134802	666348	Mm.303207	NM_001134802	ENSMUSG00000071716	Apol7e	ENSMUSG00000071716	apolipoprotein L 7e	protein-coding	4.455	2.087	1.932	3.333	4.864	4.586	3.339	4.451	4.099	2.721	3.978	3.274	3.805	3.902	3.152	2.873	3.747	4.214	1.360	1.582	3.592	nan	2.034	2.470	2.378
11076	chr5	24345948	24349826	+	0	NA	intron (NM_013569, intron 2 of 14)	intron (NM_013569, intron 2 of 14)	3717	NM_013569	16511	Mm.6539	NM_013569	ENSMUSG00000038319	Kcnh2	AI326795|ERG1|LQT|Lqt2|M-erg|Merg1|merg1a|merg1b	potassium voltage-gated channel, subfamily H (eag-related), member 2	protein-coding	6.904	10.588	3.039	7.405	5.108	2.801	6.391	7.040	4.743	9.490	5.864	2.500	5.415	8.615	7.744	9.267	5.709	6.885	5.438	2.522	2.387	6.072	3.245	3.868	10.159
7460	chr19	3693826	3695942	+	0	NA	Intergenic	PB1|SINE|Alu	-8320	NM_008513	16973	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	4.167	0.747	0.597	2.827	0.977	1.780	3.638	3.102	nan	1.308	1.179	1.204	1.847	2.508	2.607	2.009	2.059	3.067	1.053	1.017	0.933	2.576	1.716	1.272	7.876
10182	chr4	66488626	66491270	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-85465	NM_207109	56079	Mm.445312	NM_019514	ENSMUSG00000028373	Astn2	1d8|Astnl|bM452J22.1	astrotactin 2	protein-coding	13.014	5.394	2.659	10.208	7.996	4.766	8.778	11.360	9.612	8.357	9.281	7.525	11.623	11.300	12.062	12.553	7.667	11.268	3.286	2.447	1.544	nan	2.441	2.157	12.257
8386	chr2	76928306	76931856	+	0	NA	intron (NM_028004, intron 42 of 191)	intron (NM_028004, intron 42 of 191)	52466	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	8.413	0.386	0.366	3.371	2.403	1.580	4.505	4.226	6.694	7.862	7.014	1.777	7.307	5.865	nan	nan	7.415	6.517	1.200	0.914	0.732	1.659	1.058	0.646	4.825
14910	chr9	21600597	21603997	+	0	NA	Intergenic	Intergenic	6032	NR_003372	666043	Mm.247282	NR_003372		Gm7904	EG666043	predicted gene 7904	pseudo	8.590	3.192	0.610	10.083	4.059	2.671	6.493	6.767	6.135	11.800	3.224	2.479	6.823	11.067	7.373	10.336	5.273	10.386	4.638	3.158	4.144	5.735	3.647	3.107	15.078
4612	chr14	41803000	41810930	+	0	NA	Intergenic	Intergenic	-34561	NM_001244671	100042055	Mm.429109	NM_001244671	ENSMUSG00000095226	Gm10377	ENSMUSG00000072606	predicted gene 10377	protein-coding	3.479	1.077	0.896	1.670	2.658	1.535	8.994	6.881	2.751	2.837	2.813	3.421	5.769	6.109	5.811	5.848	4.047	4.280	0.584	0.656	0.452	0.571	0.473	0.676	6.432
4170	chr13	56084308	56087659	+	0	NA	intron (NM_001159513, intron 6 of 8)	intron (NM_001159513, intron 6 of 8)	49567	NM_012015	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	3.664	0.494	0.157	3.042	2.680	1.022	3.550	5.471	5.820	5.665	3.218	1.312	5.169	8.091	5.088	nan	2.868	7.012	0.447	0.568	0.262	0.628	0.409	0.316	5.762
8541	chr2	117625939	117634258	+	0	NA	Intergenic	Lx3_Mus|LINE|L1	182704	NR_126427	100504728	Mm.413174	NR_126427		Gm13985	OTTMUSG00000015235	predicted gene 13985	ncRNA	6.304	0.668	0.549	2.839	3.222	1.363	6.489	7.218	5.885	6.104	7.250	2.791	9.654	9.068	6.871	7.904	7.830	6.921	0.723	0.725	0.368	0.699	0.591	0.450	4.695
4017	chr13	41446100	41455563	+	0	NA	intron (NM_001111324, intron 1 of 7)	intron (NM_001111324, intron 1 of 7)	36529	NM_001111324	18003	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	8.582	4.529	2.332	7.393	5.152	2.443	5.610	7.079	nan	7.161	3.113	3.428	7.495	9.573	8.367	9.314	5.505	9.452	3.162	2.550	1.250	3.794	2.251	1.725	8.188
7921	chr2	3199733	3202760	+	0	NA	intron (NM_001347067, intron 4 of 7)	intron (NM_001347067, intron 4 of 7)	82561	NM_001347067	269233	Mm.23044	NM_001081161	ENSMUSG00000050530	Fam171a1	9630050M13Rik|AA409679	family with sequence similarity 171, member A1	protein-coding	nan	5.129	1.417	5.346	1.860	1.088	7.071	4.539	3.492	7.183	2.892	2.034	6.362	7.210	6.764	8.750	5.805	6.873	4.612	2.209	2.181	5.063	3.308	2.857	13.725
15002	chr9	43681576	43683007	+	0	NA	Intergenic	Intergenic	-62285	NM_021424	58235	Mm.335096	NM_021424	ENSMUSG00000032012	Nectin1	AI835281|AW549174|Cd111|HIgR|HveC|PRR|PRR1|Pvrl1|nectin-1	nectin cell adhesion molecule 1	protein-coding	1.639	0.489	0.294	1.329	0.337	0.112	2.577	2.624	1.275	1.197	2.929	1.615	3.975	4.557	nan	6.762	1.608	2.441	0.523	0.060	0.070	nan	0.126	0.096	nan
15612	chr9	121327463	121334909	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-35772	NM_175114	67095	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	4.236	1.335	0.561	5.790	2.828	1.448	4.178	6.451	4.431	5.807	6.160	2.659	6.035	7.520	5.302	6.898	3.108	7.084	1.785	0.997	0.786	2.972	nan	0.999	6.143
10734	chr4	136916194	136917487	+	0	NA	Intergenic	Intergenic	-17996	NM_007572	12259	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	nan	0.931	0.331	1.935	2.242	1.163	0.898	0.609	nan	0.808	0.393	0.388	0.127	4.355	1.368	0.686	0.899	nan	0.626	0.812	0.474	0.444	nan	0.286	2.889
8954	chr2	163899926	163904580	+	0	NA	intron (NM_183023, intron 1 of 5)	intron (NM_183023, intron 1 of 5)	16430	NM_183023	241770	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	5.637	14.027	7.925	6.397	3.844	2.758	4.248	4.101	3.460	3.921	2.634	2.249	3.310	4.112	4.334	5.420	4.581	5.003	nan	3.452	3.491	1.960	2.651	2.503	nan
11101	chr5	30558346	30561364	+	0	NA	Intergenic	Intergenic	-14019	NM_028483	73259	Mm.443299	NM_028483	ENSMUSG00000053194	Cib4	1700041E20Rik	calcium and integrin binding family member 4	protein-coding	5.050	4.690	1.656	nan	1.735	0.793	4.245	5.595	3.906	4.573	5.043	2.873	4.196	4.918	6.413	5.778	3.541	5.693	4.268	1.491	1.119	4.853	1.999	1.969	6.462
6814	chr17	71057114	71063168	+	0	NA	intron (NM_010867, intron 10 of 37)	intron (NM_010867, intron 10 of 37)	40584	NM_001083934	17929	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	0.774	0.614	0.535	0.469	0.972	0.536	1.965	2.362	nan	0.829	4.491	6.472	1.251	nan	1.407	1.119	0.910	0.853	0.663	0.793	0.876	0.709	1.004	0.676	1.022
8261	chr2	58978567	58982467	+	0	NA	exon (NM_001001178, exon 9 of 14)	exon (NM_001001178, exon 9 of 14)	38089	NM_001001178	227933	Mm.330234	NM_177650	ENSMUSG00000036641	Ccdc148	5830402J09	coiled-coil domain containing 148	protein-coding	0.480	0.478	0.365	0.319	0.145	0.064	0.429	nan	0.395	0.306	0.234	0.169	0.223	0.239	0.371	0.498	0.674	0.507	5.883	4.263	2.723	4.567	6.919	6.385	0.505
5253	chr15	62113101	62120087	+	0	NA	intron (NR_132746, intron 2 of 6)	intron (NR_132746, intron 2 of 6)	77337	NR_132746	19296	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	plasmacytoma variant translocation 1	ncRNA	2.586	1.337	0.727	nan	2.001	1.028	5.582	4.943	2.712	nan	1.456	1.933	4.280	4.767	6.298	4.518	3.457	3.250	0.908	1.089	0.641	1.729	0.643	0.362	1.795
5269	chr15	66626565	66635705	+	0	NA	intron (NM_001081409, intron 17 of 20)	intron (NM_001081409, intron 17 of 20)	-39635	NM_009375	21819	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	2.735	9.230	3.513	2.740	0.837	0.319	0.775	0.846	1.542	1.729	1.052	0.584	0.688	1.233	1.616	1.718	0.993	2.176	0.803	1.028	0.601	0.667	0.434	0.254	1.666
6483	chr17	28592375	28599421	+	0	NA	intron (NM_016795, intron 12 of 15)	intron (NM_016795, intron 12 of 15)	20179	NM_026571	328789	Mm.284760	NM_026571	ENSMUSG00000062252	Lhfpl5	9330179O15Rik|Tmhs|hscy	lipoma HMGIC fusion partner-like 5	protein-coding	2.168	1.012	1.085	2.209	4.550	4.507	2.471	1.789	2.118	2.218	0.929	1.168	2.317	2.994	1.826	nan	2.510	2.392	1.343	1.238	1.219	1.021	1.177	1.318	1.060
3795	chr12	118668448	118671540	+	0	NA	Intergenic	RLTR12D|LTR|ERVK	-139801	NR_045947	100384890	Mm.484658	NR_045947		D230030E09Rik	Npe	Riken cDNA D230030E09 gene	ncRNA	5.764	0.757	0.383	3.961	2.482	1.516	5.847	3.609	3.854	3.067	4.904	2.334	4.882	5.359	5.706	5.824	4.282	4.510	0.707	0.687	0.604	0.933	0.501	0.335	6.104
1448	chr10	76092362	76094221	+	0	NA	intron (NM_023219, intron 5 of 14)	intron (NM_023219, intron 5 of 14)	17727	NM_023219	64454	Mm.155678	NM_023219	ENSMUSG00000020226	Slc5a4b	2010104G07Rik|SAAT1|SGLT3-b|SGLT3b|pSGLT2	solute carrier family 5 (neutral amino acid transporters, system A), member 4b	protein-coding	7.569	0.608	0.484	nan	6.780	4.574	2.485	4.318	4.130	6.684	3.085	1.077	4.847	9.338	4.078	4.865	8.301	4.656	nan	0.901	0.796	0.414	0.465	0.209	4.567
8086	chr2	30253334	30257537	+	0	NA	exon (NM_177725, exon 3 of 4)	exon (NM_177725, exon 3 of 4)	-10768	NM_001252568	227696	Mm.297949	NM_172267	ENSMUSG00000079484	Phyhd1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding	4.839	1.107	0.377	3.446	0.946	0.585	3.502	6.595	2.842	5.232	0.833	0.829	4.096	3.748	3.621	5.996	4.852	6.537	1.086	0.443	0.457	2.348	0.483	0.360	9.273
3146	chr12	3278746	3282644	+	0	NA	intron (NM_016676, intron 1 of 5)	B1_Mus2|SINE|Alu	29274	NM_016676	19325	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	2.199	2.994	3.282	1.555	4.700	4.889	1.259	1.579	1.966	2.006	1.075	1.125	2.136	1.940	1.033	1.369	2.108	2.175	0.706	0.956	1.066	0.417	0.730	0.837	1.352
4913	chr14	99976916	99981207	+	0	NA	intron (NM_010636, intron 4 of 6)	intron (NM_010636, intron 4 of 6)	170735	NM_010636	16597	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	5.146	nan	0.517	3.923	4.211	2.209	5.645	7.007	6.513	5.988	8.574	6.338	5.205	8.478	6.003	6.894	4.915	6.110	2.421	2.583	1.000	2.363	3.526	2.636	6.216
9108	chr2	180160143	180163992	+	0	NA	3' UTR (NM_144500, exon 14 of 14)	3' UTR (NM_144500, exon 14 of 14)	-9521	NM_019822	56436	Mm.316654	NM_019822	ENSMUSG00000039041	Adrm1	1110063P18Rik|2510006J17Rik|AA408205|ARM-1|AU043535|Arm1|Gp110|Rpn13	adhesion regulating molecule 1	protein-coding	0.719	0.906	0.345	0.364	0.174	0.246	0.454	0.454	0.359	0.423	0.368	0.270	0.183	0.346	0.272	nan	0.372	nan	2.290	0.825	0.386	3.910	0.584	0.469	nan
15535	chr9	114640291	114647780	+	0	NA	Intergenic	Intergenic	-3835	NM_153585	78893	Mm.283708	NM_153585	ENSMUSG00000056167	Cnot10	2600001P13Rik	CCR4-NOT transcription complex, subunit 10	protein-coding	7.139	3.219	1.412	4.337	2.503	1.876	4.680	6.179	3.862	5.195	2.790	2.165	5.126	6.022	5.166	5.575	4.132	5.203	1.455	1.684	1.327	1.744	nan	1.133	9.199
1573	chr10	86962106	86966615	+	0	NA	intron (NM_138673, intron 9 of 68)	intron (NM_138673, intron 9 of 68)	43582	NM_138673	192188	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	nan	0.391	0.138	0.218	0.135	0.082	0.197	0.223	0.210	0.160	0.160	0.355	0.073	nan	0.151	0.347	0.491	nan	8.966	5.193	2.517	nan	10.019	6.770	0.393
5484	chr15	81957020	81958965	+	0	NA	intron (NM_001282041, intron 1 of 5)	intron (NM_001282041, intron 1 of 5)	2938	NM_001282040	29858	Mm.18939	NM_013872	ENSMUSG00000022474	Pmm1	C77612	phosphomannomutase 1	protein-coding	nan	9.135	2.416	5.054	1.666	1.722	nan	4.698	2.436	3.863	2.048	1.641	4.941	5.303	4.780	5.986	3.721	4.839	3.088	1.631	1.904	nan	1.535	1.490	7.148
11230	chr5	53269610	53276861	+	0	NA	intron (NM_001145433, intron 1 of 2)	intron (NM_001145433, intron 1 of 2)	6129	NM_001145433	66278	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	6.955	0.695	0.362	3.149	1.942	1.169	7.461	5.252	5.309	7.063	2.013	0.772	5.795	6.469	7.125	nan	4.230	6.739	1.386	1.268	0.904	1.539	1.263	0.830	9.471
14249	chr8	63747340	63758510	+	0	NA	Intergenic	Lx9|LINE|L1	199245	NM_001195687	244495	Mm.485331	NM_001195687	ENSMUSG00000094443	Sgol2b	EG244495|Gm4975|Sgo2B	shugoshin like 2b (S. pombe)	protein-coding	6.455	1.559	0.791	3.496	4.551	2.339	6.610	8.539	4.164	5.587	3.932	3.263	8.312	7.584	7.550	7.685	6.090	5.690	nan	1.440	0.823	1.448	1.480	0.802	7.353
14945	chr9	32325544	32327261	+	0	NA	intron (NM_010605, intron 2 of 3)	intron (NM_010605, intron 2 of 3)	17835	NM_010605	16521	Mm.69472	NM_010605	ENSMUSG00000032034	Kcnj5	GIRK4|Kir3.4	potassium inwardly-rectifying channel, subfamily J, member 5	protein-coding	4.107	4.492	1.704	3.918	2.342	0.833	1.730	1.126	1.848	2.444	2.077	0.725	1.052	2.136	1.638	2.301	1.484	2.542	2.287	2.601	0.776	3.770	1.075	0.659	3.290
2020	chr11	20989032	20996156	+	0	NA	Intergenic	Intergenic	-98730	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	5.786	6.513	2.582	6.041	3.688	2.209	4.640	5.572	4.512	8.089	3.865	2.922	5.284	6.147	5.909	5.634	4.709	7.344	2.653	1.343	1.266	3.081	1.486	1.827	4.656
7155	chr18	36541558	36548385	+	0	NA	TTS (NM_001271545)	TTS (NM_001271545)	-15632	NM_175375	108857	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	5.578	0.654	0.501	2.204	2.620	1.243	7.327	8.364	4.095	2.934	3.343	3.405	7.221	5.490	5.905	6.279	4.496	7.195	4.803	2.194	1.386	6.191	2.413	1.332	6.987
3770	chr12	114060023	114062723	+	0	NA	Intergenic	Intergenic	408093	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	4.331	5.817	2.000	4.302	2.343	1.467	1.622	3.101	3.115	2.645	4.917	1.827	1.964	3.618	3.312	4.162	2.622	4.295	2.202	1.203	0.873	1.539	1.171	0.675	4.942
3524	chr12	81702156	81705920	+	0	NA	Intergenic	Intergenic	72789	NM_001033149	69480	Mm.130002	NM_001033149	ENSMUSG00000042734	Ttc9	-	tetratricopeptide repeat domain 9	protein-coding	1.786	0.666	0.222	1.574	0.951	0.278	2.078	3.643	2.691	2.332	1.104	1.091	3.375	5.146	4.112	5.191	1.465	3.499	3.267	1.192	0.873	4.139	2.448	1.798	4.110
4485	chr14	18184702	18185926	+	0	NA	Intergenic	Intergenic	53792	NM_011584	353187	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	2.019	0.259	0.235	1.416	1.008	0.311	2.047	1.549	nan	2.727	0.956	0.240	3.687	3.569	3.592	3.607	1.720	4.060	0.688	0.179	0.200	nan	0.155	0.101	1.593
9414	chr3	85773593	85778695	+	0	NA	Intergenic	Intergenic	-29935	NM_172682	229488	Mm.119926	NM_172682	ENSMUSG00000051000	Fam160a1	9930021J17Rik	family with sequence similarity 160, member A1	protein-coding	5.917	0.973	0.498	4.127	4.627	2.242	9.748	6.806	4.143	6.857	3.947	3.014	8.640	8.889	7.123	7.122	6.325	6.650	nan	2.169	1.576	3.392	3.167	2.501	7.921
3725	chr12	111654265	111657116	+	0	NA	3' UTR (NM_021516, exon 17 of 17)	3' UTR (NM_021516, exon 17 of 17)	16648	NM_021273	12709	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	4.464	1.061	0.995	3.012	2.707	1.983	4.401	3.036	nan	2.781	0.752	0.740	3.787	7.405	3.671	5.315	3.319	2.744	1.950	1.071	1.166	1.308	1.110	0.856	5.020
7521	chr19	7379408	7382776	+	0	NA	intron (NM_001167831, intron 1 of 4)	intron (NM_001167831, intron 1 of 4)	-1911	NR_045703	654802	Mm.414924	NR_045703		1700105P06Rik	-	RIKEN cDNA 1700105P06 gene	ncRNA	4.779	1.801	0.987	3.921	3.202	1.706	4.926	8.005	3.495	3.631	3.961	2.340	4.222	6.195	4.893	5.180	5.721	5.302	3.260	2.667	2.449	6.794	4.282	2.945	7.845
14443	chr8	90181085	90189671	+	0	NA	Intergenic	Intergenic	162874	NM_172913	244579	Mm.302755	NM_172913	ENSMUSG00000043668	Tox3	500-9|BC052044|C230068E13|CAGF9|Tnrc9	TOX high mobility group box family member 3	protein-coding	0.352	11.950	4.325	0.533	0.233	0.087	0.303	0.278	nan	0.297	0.204	0.153	0.110	0.204	0.331	0.559	0.279	0.369	nan	0.599	0.438	1.867	0.264	0.245	0.631
10388	chr4	114183575	114185019	+	0	NA	intron (NM_001166027, intron 1 of 6)	intron (NM_001166027, intron 1 of 6)	20913	NM_001166027	230623	Mm.124482	NM_177669	ENSMUSG00000057977	Skint11	A630098G03Rik|Gm569	selection and upkeep of intraepithelial T cells 11	protein-coding	2.020	0.287	0.179	0.375	0.159	0.174	1.850	1.205	0.426	0.341	0.736	0.339	0.812	3.521	1.813	nan	0.993	0.965	0.702	0.363	0.400	0.412	0.410	0.231	1.327
1772	chr10	117114309	117116190	+	0	NA	intron (NM_177798, intron 1 of 9)	intron (NM_177798, intron 1 of 9)	33225	NM_177798	327826	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	3.423	1.133	0.619	2.018	2.407	1.681	3.810	3.549	1.589	3.074	0.961	1.277	2.593	3.964	3.940	3.866	3.344	3.060	0.771	0.519	0.065	0.544	0.489	0.402	3.804
418	chr1	90402858	90406488	+	0	NA	Intergenic	Intergenic	-198752	NM_133805	108679	Mm.119177	NM_133805	ENSMUSG00000034432	Cops8	9430009J09Rik|AA408242|Csn8|Sgn8	COP9 signalosome subunit 8	protein-coding	1.953	0.752	0.507	2.321	2.435	0.775	3.569	1.714	3.043	2.396	7.261	4.264	4.225	3.522	3.060	4.694	2.390	3.496	0.954	0.837	0.473	nan	1.190	0.684	2.560
2324	chr11	63727530	63729474	+	0	NA	Intergenic	Intergenic	193782	NM_018805	54710	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	3.739	1.876	0.410	3.184	1.612	0.903	3.316	3.312	2.125	2.719	0.764	1.106	3.762	4.646	5.294	5.792	5.808	3.579	1.902	0.916	0.366	2.283	nan	0.866	5.085
14586	chr8	109926336	109931339	+	0	NA	intron (NM_001122594, intron 13 of 18)	intron (NM_001122594, intron 13 of 18)	33368	NM_212447	73608	Mm.86833	NM_028584	ENSMUSG00000001672	Marveld3	1810006A16Rik|AI642133|Marvd3|Mrvldc3	MARVEL (membrane-associating) domain containing 3	protein-coding	2.885	0.875	0.570	2.050	2.065	1.741	2.035	8.385	2.564	2.190	1.679	1.529	3.107	3.461	3.147	3.567	2.169	2.991	0.814	0.894	0.429	nan	0.594	0.582	2.855
933	chr1	181888815	181892674	+	0	NA	Intergenic	Intergenic	-48343	NM_133815	98386	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	7.242	3.105	0.980	6.544	3.510	2.368	6.298	6.228	4.695	11.353	3.651	2.790	6.598	7.484	7.203	11.032	6.995	6.766	4.139	2.237	2.065	5.106	3.564	4.008	9.543
4174	chr13	56453611	56454611	+	0	NA	intron (NM_177809, intron 4 of 7)	intron (NM_177809, intron 4 of 7)	15756	NM_177809	328258	Mm.482177	NM_177809	ENSMUSG00000021509	Slc25a48	AU042651|E230025K15	solute carrier family 25, member 48	protein-coding	4.666	1.242	0.005	2.829	1.557	0.545	1.310	1.239	2.484	3.150	5.189	1.037	1.519	nan	2.413	2.186	1.361	2.017	0.600	1.374	0.451	0.833	0.623	0.470	3.350
2217	chr11	54693777	54698900	+	0	NA	3' UTR (NM_001252494, exon 29 of 29)	3' UTR (NM_001252494, exon 29 of 29)	91365	NM_178626	72729	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	5.546	2.704	1.575	4.230	3.858	3.330	2.346	2.706	2.686	3.047	1.542	1.547	2.955	3.873	2.449	2.784	2.304	2.576	2.754	2.696	3.050	1.852	3.860	4.143	2.677
13422	chr7	96322205	96324853	+	0	NA	intron (NM_001310760, intron 1 of 32)	IAPEz-int|LTR|ERVK	17862	NR_105818	102465210		NR_105818	ENSMUSG00000099030	Mir6394	Gm27929|mmu-mir-6394	microRNA 6394	ncRNA	3.309	1.509	0.763	1.916	2.312	0.741	4.066	5.689	4.046	3.976	1.771	2.237	7.042	5.783	6.542	4.956	4.002	4.558	nan	0.611	0.200	0.540	0.606	0.130	2.885
11494	chr5	103793428	103797752	+	0	NA	intron (NM_001080798, intron 3 of 19)	intron (NM_001080798, intron 3 of 19)	41017	NM_001080798	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	5.226	1.172	0.707	3.096	3.429	2.309	5.312	3.323	4.754	6.164	7.606	4.684	4.989	8.997	5.619	4.571	3.843	4.307	nan	1.011	0.772	0.661	1.186	0.966	5.234
2333	chr11	66796182	66799407	+	0	NA	Intergenic	L1Md_F3|LINE|L1	-114197	NM_178656	193003	Mm.440256	NM_178656	ENSMUSG00000048070	Pirt	A530088H08Rik	phosphoinositide-interacting regulator of transient receptor potential channels	protein-coding	2.757	4.912	2.858	2.819	2.207	0.803	2.353	3.707	3.816	2.993	0.764	2.403	3.961	4.040	3.862	4.875	2.446	4.821	4.981	2.459	1.585	4.544	nan	3.438	nan
6386	chr17	24213325	24215740	+	0	NA	TTS (NM_028056)	TTS (NM_028056)	-5145	NM_010947	18209	Mm.259542	NM_010947	ENSMUSG00000036473	Ntn3	Ntn2l	netrin 3	protein-coding	3.662	0.706	0.610	1.897	1.729	0.902	6.833	4.613	2.100	2.709	1.229	0.320	4.741	4.020	6.046	6.365	4.545	3.313	0.798	0.886	0.152	0.515	0.218	0.295	5.688
10630	chr4	132514388	132518375	+	0	NA	Intergenic	Intergenic	-5925	NM_144907	230784	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	5.688	6.802	2.386	6.728	3.668	1.921	2.270	2.691	3.211	3.685	4.214	2.031	1.828	3.500	3.025	3.288	1.719	3.978	6.603	5.879	4.489	9.480	4.893	3.721	4.497
6020	chr16	33575525	33585818	+	0	NA	intron (NM_001083902, intron 4 of 11)	intron (NM_001083902, intron 4 of 11)	62076	NM_001083902	171286	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	5.058	3.407	1.379	5.706	3.263	2.092	4.568	3.745	2.655	3.141	1.338	1.245	2.891	4.480	3.102	4.405	2.934	5.001	1.133	0.938	0.829	1.121	1.328	0.912	nan
7053	chr18	20675326	20677112	+	0	NA	Intergenic	Intergenic	10969	NM_013697	22139	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	nan	0.562	0.241	0.372	0.161	0.087	1.080	3.141	0.801	0.674	5.501	4.195	0.994	0.514	0.474	0.557	0.665	0.558	0.711	0.501	0.128	0.254	0.597	0.255	0.326
15863	chrX	162877650	162879123	+	0	NA	exon (NM_025932, exon 4 of 9)	exon (NM_025932, exon 4 of 9)	-3391	NR_037311	100499528		NR_037311	ENSMUSG00000092752	Mir3473a	Mir3473|mir-3473a|mmu-mir-3473|mmu-mir-3473a	microRNA 3473a	ncRNA	4.839	8.687	1.714	7.233	1.986	1.299	3.727	4.017	4.540	7.030	3.609	1.628	4.562	5.499	5.991	7.155	2.373	7.315	4.399	0.763	1.637	4.815	1.621	2.121	10.525
13286	chr7	74753052	74754987	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-199239	NM_001038643	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.714	0.933	0.738	nan	0.581	0.592	0.731	0.723	0.567	0.509	0.685	0.780	0.470	0.921	0.401	nan	0.673	0.935	6.784	4.315	2.269	6.206	6.890	5.167	nan
12189	chr6	39662686	39663977	+	0	NA	intron (NM_139294, intron 6 of 21)	intron (NM_139294, intron 6 of 21)	62132	NM_139294	109880	Mm.245513	NM_139294	ENSMUSG00000002413	Braf	9930012E13Rik|AA120551|AA387315|AA473386|B-raf|Braf-2|Braf2|C230098H17|C87398|D6Ertd631e	Braf transforming gene	protein-coding	2.935	0.646	0.906	1.992	4.519	2.602	2.666	1.180	2.424	2.634	1.167	0.841	2.210	3.337	2.083	2.935	2.755	nan	nan	1.312	0.546	nan	nan	1.033	nan
2052	chr11	30162835	30169985	+	0	NA	intron (NM_175836, intron 1 of 34)	intron (NM_175836, intron 1 of 34)	31847	NM_009260	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	6.720	2.205	1.095	8.524	4.912	2.977	4.707	4.415	3.202	6.096	1.996	0.718	3.862	5.275	5.437	6.600	nan	6.431	3.084	2.081	1.861	3.015	1.719	1.887	7.747
4785	chr14	66453261	66458095	+	0	NA	Intergenic	RSINE1|SINE|B4	111382	NM_019675	56471	Mm.35474	NM_019675	ENSMUSG00000022044	Stmn4	Lagl|R75359|RB3	stathmin-like 4	protein-coding	7.005	4.574	2.382	4.072	2.899	2.076	7.296	9.277	5.668	6.907	3.081	3.307	6.143	6.878	6.647	7.015	4.464	6.838	2.168	nan	1.799	2.543	1.679	1.284	9.230
7423	chr18	80783055	80785877	+	0	NA	intron (NM_001201569, intron 13 of 29)	intron (NM_001201569, intron 13 of 29)	-71395	NM_001164109	18018	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	1.206	nan	0.477	1.247	1.574	0.698	1.605	1.830	4.080	nan	0.807	0.317	4.784	5.483	2.612	3.994	2.059	2.299	1.502	nan	0.469	2.111	1.058	0.445	4.011
14186	chr8	42324402	42326544	+	0	NA	Intergenic	Intergenic	498206	NR_045497	69966	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA	7.875	12.141	3.722	9.092	3.820	2.438	6.297	7.786	3.963	9.958	4.428	3.237	8.113	8.747	8.543	8.923	6.390	7.572	6.252	3.160	4.079	8.432	3.108	3.832	12.154
14121	chr8	34768748	34774909	+	0	NA	Intergenic	Intergenic	-35782	NM_176933	319520	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	4.666	1.856	1.369	2.581	3.264	2.715	2.860	7.823	3.869	3.109	6.844	6.526	3.213	4.746	3.003	3.154	2.781	3.773	1.455	1.177	1.395	2.310	1.713	1.834	nan
2868	chr11	105221958	105229232	+	0	NA	intron (NM_001294330, intron 6 of 17)	L1Md_F2|LINE|L1	44068	NM_001294329	24086	Mm.126976	NM_011903	ENSMUSG00000020694	Tlk2	4933403M19Rik|PKU-alpha|PKUalpha|Tlk	tousled-like kinase 2 (Arabidopsis)	protein-coding	1.678	1.626	0.432	nan	0.744	0.553	2.248	2.343	nan	nan	0.795	1.091	1.883	nan	3.171	2.846	1.123	nan	4.467	1.702	1.431	nan	1.875	1.650	3.447
14420	chr8	87902772	87904722	+	0	NA	intron (NM_033327, intron 2 of 7)	intron (NM_033327, intron 2 of 7)	55848	NM_033327	94187	Mm.23452	NM_033327	ENSMUSG00000045333	Zfp423	Ebfaz|Roaz|Zfp104|Znf423|ataxia1|mKIAA0760|nur12	zinc finger protein 423	protein-coding	5.566	0.808	0.659	2.836	1.704	0.921	4.954	4.178	1.843	1.471	3.506	0.631	5.761	4.744	2.805	5.309	4.869	3.471	nan	0.990	0.496	0.975	0.617	0.296	3.424
15428	chr9	100977343	100983279	+	0	NA	Intergenic	RSINE1|SINE|B4	54573	NM_001311149	66904	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	7.547	9.501	4.021	7.639	3.620	1.802	4.487	6.358	6.473	8.676	5.572	4.217	5.260	7.197	6.611	8.502	4.776	8.272	5.704	3.340	2.714	4.588	4.431	3.951	9.817
13736	chr7	133415115	133416315	+	0	NA	Intergenic	Intergenic	186400	NM_028654	73808	Mm.159067	NM_028654	ENSMUSG00000030976	Tex36	4930404H21Rik	testis expressed 36	protein-coding	7.157	8.747	2.115	6.664	3.029	1.272	6.841	9.141	3.186	7.473	3.494	3.008	5.503	8.531	7.580	8.596	6.056	7.605	7.741	6.048	4.556	8.651	7.358	5.024	13.427
13373	chr7	87483726	87488959	+	0	NA	intron (NM_001317397, intron 1 of 3)	intron (NM_001317397, intron 1 of 3)	7170	NM_011661	22173	Mm.238127	NM_011661	ENSMUSG00000004651	Tyr	Oca1|albino|c|skc35	tyrosinase	protein-coding	5.519	7.687	2.281	5.949	2.498	0.871	5.845	6.774	nan	5.467	4.283	2.392	5.904	7.578	7.715	nan	5.151	6.734	2.899	1.502	0.967	nan	2.135	1.634	9.262
5357	chr15	76140996	76143998	+	0	NA	Intergenic	Intergenic	-15941	NM_001142968	271278	Mm.205253	NM_198172	ENSMUSG00000044361	BC024139	6230424I18Rik	cDNA sequence BC024139	protein-coding	6.294	2.672	1.187	2.073	2.744	2.160	6.459	8.087	2.571	2.887	nan	1.517	5.828	6.221	6.019	3.808	4.413	3.717	0.969	1.050	0.948	nan	0.789	0.414	3.215
2503	chr11	77819072	77820590	+	0	NA	intron (NM_001291214, intron 6 of 38)	intron (NM_001291214, intron 6 of 38)	18533	NM_001291215	360013	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	2.115	0.614	0.593	2.063	3.152	1.671	1.306	1.187	1.915	2.625	0.488	0.471	1.802	5.324	nan	2.540	1.260	3.514	0.694	0.543	nan	0.590	0.470	0.294	2.284
4100	chr13	48936057	48938706	+	0	NA	intron (NM_001033268, intron 3 of 17)	intron (NM_001033268, intron 3 of 17)	30447	NM_001033268	218236	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	2.747	1.427	1.316	nan	3.517	1.900	2.706	4.083	2.519	2.446	2.052	1.826	1.700	3.034	2.879	3.264	1.577	2.426	0.822	nan	0.537	0.684	0.646	0.398	nan
388	chr1	88196180	88204325	+	0	NA	promoter-TSS (NM_013701)	promoter-TSS (NM_013701)	-359	NM_013701	22236	Mm.300095	NM_013701	ENSMUSG00000090171	Ugt1a2	UDPGT 1-2|Ugt1	UDP glucuronosyltransferase 1 family, polypeptide A2	protein-coding	5.977	4.456	1.629	2.159	1.358	1.018	3.745	4.914	3.728	5.983	1.457	1.295	7.075	6.154	6.576	14.620	5.486	6.735	1.740	0.812	0.774	nan	0.769	0.479	7.464
12094	chr6	28630037	28633706	+	0	NA	intron (NM_019776, intron 11 of 23)	intron (NM_019776, intron 11 of 23)	151523	NM_019776	56463	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	3.800	0.877	0.311	2.465	1.676	0.734	4.205	5.019	2.635	2.886	0.841	0.971	4.093	3.758	4.375	6.680	4.378	4.090	nan	1.853	0.938	2.615	1.781	0.964	2.449
13524	chr7	108561572	108564385	+	0	NA	Intergenic	L1_Mus3|LINE|L1	2815	NM_001011858	258163	Mm.377367	NM_001011858	ENSMUSG00000060105	Olfr504	MOR40-15|MOR40-7P	olfactory receptor 504	protein-coding	3.390	1.320	0.900	1.410	2.028	1.403	3.658	4.466	1.226	2.383	0.492	0.450	2.941	5.420	4.829	4.498	3.254	nan	nan	0.702	0.435	0.984	1.443	0.971	8.146
5350	chr15	75987814	75990975	+	0	NA	Intergenic	Intergenic	-4375	NM_177922	332110	Mm.40843	NM_177922	ENSMUSG00000063704	Mapk15	BC048082	mitogen-activated protein kinase 15	protein-coding	2.305	nan	0.565	nan	1.275	1.169	2.076	4.496	2.329	nan	7.436	3.926	2.606	2.602	2.111	2.024	2.333	2.993	1.769	1.403	1.965	nan	1.834	2.582	2.518
10177	chr4	63204545	63210362	+	0	NA	Intergenic	Intergenic	-7959	NM_025685	373864	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	7.622	3.761	1.527	6.172	4.559	2.579	4.961	6.477	5.534	7.839	3.634	2.045	6.146	10.039	5.764	nan	4.918	5.979	3.358	2.093	1.429	nan	nan	3.574	8.194
5053	chr15	11833241	11837066	+	0	NA	Intergenic	B4A|SINE|B4	70521	NM_008728	18162	Mm.25259	NM_008728	ENSMUSG00000022206	Npr3	ANP-C|ANPR-C|EF-2|NPR-C|lgj|stri	natriuretic peptide receptor 3	protein-coding	1.528	0.552	0.069	6.576	0.565	0.254	0.884	0.750	0.936	1.657	0.541	0.608	0.497	1.105	0.758	1.226	0.932	1.788	0.589	0.283	0.353	0.382	0.331	0.351	2.657
5888	chr16	21446450	21448889	+	0	NA	intron (NM_001285893, intron 6 of 46)	intron (NM_001285893, intron 6 of 46)	24551	NM_001285894	209018	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	5.401	0.663	0.556	2.916	2.474	1.157	4.877	2.468	3.132	3.587	0.774	0.658	6.022	8.492	6.264	6.565	5.247	5.355	0.667	0.290	0.271	0.554	0.431	0.127	6.892
15138	chr9	59331448	59335356	+	0	NA	intron (NM_175325, intron 8 of 15)	RMER30|DNA|hAT-Charlie	20106	NM_175325	102774	Mm.200714	NM_175325	ENSMUSG00000025235	Bbs4	AW537059|AW742241|D9Ertd464e	Bardet-Biedl syndrome 4 (human)	protein-coding	9.203	10.445	3.911	10.953	5.611	3.773	6.416	7.569	5.790	12.479	6.120	4.030	6.438	8.925	6.882	8.311	6.199	8.077	5.764	3.309	3.591	5.430	3.997	5.033	13.315
9180	chr3	27090554	27094188	+	0	NA	Intergenic	L1_Mus3|LINE|L1	61483	NM_007900	13605	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536|mKIAA4037	ect2 oncogene	protein-coding	8.287	4.043	1.697	nan	7.567	3.894	2.685	2.035	nan	4.439	2.266	1.689	3.208	5.753	nan	5.733	2.581	nan	2.556	2.998	1.318	2.342	2.846	1.634	4.543
4190	chr13	59634735	59642572	+	0	NA	intron (NM_027307, intron 9 of 10)	L1_Mus1|LINE|L1	37131	NM_001035122	105348	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	nan	0.925	0.569	0.832	0.653	0.251	0.404	0.491	0.844	1.141	0.441	0.291	0.670	nan	0.849	nan	0.734	nan	3.839	2.630	1.136	6.063	2.936	1.334	nan
15064	chr9	50302647	50305723	+	0	NA	Intergenic	Intergenic	-71003	NR_131161	71873		NR_131161	ENSMUSG00000110916	2310003N18Rik	-	RIKEN cDNA 2310003N18 gene	ncRNA	6.233	0.967	0.888	3.083	2.502	1.147	5.844	13.348	3.615	6.920	10.370	3.863	1.427	6.669	6.766	9.328	4.797	4.294	1.800	1.371	0.926	nan	2.619	1.835	4.069
9944	chr4	11901991	11903001	+	0	NA	Intergenic	L1MEd|LINE|L1	63217	NM_001098231	381511	Mm.331489	NM_001033453	ENSMUSG00000049225	Pdp1	Gm1024|Ppm2c	pyruvate dehyrogenase phosphatase catalytic subunit 1	protein-coding	3.681	1.457	0.549	3.556	1.569	0.483	2.615	4.542	3.169	3.010	4.336	1.848	3.607	3.996	4.338	4.168	3.836	4.043	1.833	nan	0.121	1.953	0.447	0.241	4.599
6197	chr16	91462274	91464078	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-1928	NR_077219	100503120	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	3.995	2.964	2.599	2.356	3.765	2.557	1.355	2.001	2.171	2.643	1.340	1.728	1.464	3.672	1.628	2.128	1.965	2.165	1.292	1.894	1.419	nan	1.196	1.190	1.600
6530	chr17	31714100	31716689	+	0	NA	Intergenic	ORR1A2|LTR|ERVL-MaLR	37463	NM_001278570	12954	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	4.766	0.965	0.403	2.532	2.540	2.102	1.361	1.215	2.561	3.607	0.851	0.616	2.008	4.657	1.636	1.982	1.794	2.465	0.912	1.391	0.931	1.706	1.043	0.905	5.681
485	chr1	99975738	99983102	+	0	NA	intron (NM_172851, intron 3 of 23)	intron (NM_172851, intron 3 of 23)	206655	NM_172851	241175	Mm.251301	NM_172851	ENSMUSG00000067028	Cntnap5b	C230078M14Rik|Caspr5-2	contactin associated protein-like 5B	protein-coding	4.891	nan	0.303	2.813	1.252	0.753	4.019	4.015	3.631	2.627	7.003	4.633	4.461	3.551	3.482	nan	3.747	nan	3.329	2.311	1.011	nan	4.359	2.704	nan
9925	chr4	9569851	9571382	+	0	NA	intron (NM_023066, intron 13 of 23)	intron (NM_023066, intron 13 of 23)	73101	NM_001177853	65973	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	6.092	2.284	1.531	3.106	1.615	1.067	3.451	3.915	2.521	3.396	3.683	3.349	3.009	3.746	4.125	4.947	2.861	4.345	7.139	3.126	0.952	4.807	2.809	1.459	3.944
3316	chr12	52455305	52456751	+	0	NA	Intergenic	ORR1A2|LTR|ERVL-MaLR	24581	NR_136881	102638611	Mm.363799	NR_136881		Gm35135	-	predicted gene, 35135	ncRNA	6.869	1.097	0.906	1.745	2.912	3.197	7.111	4.162	2.776	1.891	2.144	2.033	3.372	4.668	4.619	4.249	3.199	3.555	0.500	0.174	0.182	0.502	0.452	0.203	3.199
8886	chr2	157205810	157207886	+	0	NA	Intergenic	Intergenic	-2314	NM_001139516	19650	Mm.244671	NM_011249	ENSMUSG00000027641	Rbl1	AW547426|PRB1|p107	retinoblastoma-like 1 (p107)	protein-coding	2.905	0.980	0.660	1.700	1.820	0.903	4.629	2.392	2.808	3.241	0.423	1.104	4.012	5.151	3.417	5.943	4.357	4.408	nan	0.407	0.715	0.328	0.435	0.382	nan
1270	chr10	43831576	43833060	+	0	NA	intron (NR_131055, intron 2 of 2)	intron (NR_131055, intron 2 of 2)	6411	NR_131055	71018	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	2.348	nan	0.202	0.885	0.491	0.558	5.198	4.250	3.114	1.798	5.646	4.313	5.099	5.241	4.826	3.203	1.592	2.773	nan	0.235	0.083	0.901	0.346	0.567	1.671
10708	chr4	135426368	135433574	+	0	NA	intron (NM_022980, intron 1 of 4)	intron (NM_022980, intron 1 of 4)	3834	NM_022980	53902	Mm.331970	NM_022980	ENSMUSG00000059713	Rcan3	AU041093|Csp3|Dscr1l2	regulator of calcineurin 3	protein-coding	9.792	15.321	6.110	9.074	5.409	3.152	6.553	7.556	7.045	8.402	6.592	3.821	7.202	9.451	9.073	9.777	5.455	9.664	7.202	3.916	3.173	8.696	nan	4.489	8.598
11599	chr5	115414230	115416262	+	0	NA	Intergenic	Intergenic	-14439	NM_008629	17690	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	4.149	1.019	0.732	0.731	0.282	0.247	9.116	8.195	1.384	1.110	0.208	3.578	6.073	4.885	5.383	6.403	4.719	2.770	2.019	nan	0.823	1.731	5.944	3.938	0.984
1645	chr10	94987412	94991543	+	0	NA	Intergenic	Intergenic	-44899	NM_018797	54712	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	4.148	1.677	1.611	2.517	4.373	3.711	3.845	3.870	4.031	3.589	4.791	4.346	4.880	5.503	3.108	3.712	6.068	3.290	nan	1.319	0.894	nan	0.976	0.790	2.639
3508	chr12	81147139	81150995	+	0	NA	intron (NM_022316, intron 5 of 12)	intron (NM_022316, intron 5 of 12)	-17084	NR_037227	100526532		NR_037227	ENSMUSG00000092673	Mir3067	mir-3067|mmu-mir-3067	microRNA 3067	ncRNA	14.274	1.577	1.028	5.815	6.575	3.861	11.349	6.676	6.180	7.910	4.067	3.336	11.768	14.317	9.691	12.421	13.241	8.559	0.928	1.591	1.018	0.871	1.228	0.914	12.070
324	chr1	75729268	75733686	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	185211	NM_009208	20536	Mm.5053	NM_009208	ENSMUSG00000006576	Slc4a3	A930038D23Rik|Ae3	solute carrier family 4 (anion exchanger), member 3	protein-coding	2.602	0.534	0.382	1.072	2.654	1.289	1.691	0.944	2.749	4.423	0.460	0.628	3.095	5.454	2.736	3.726	4.178	nan	nan	nan	0.256	0.499	nan	0.302	nan
1389	chr10	67737523	67746042	+	0	NA	Intergenic	MTEb|LTR|ERVL-MaLR	170880	NM_178679	216049	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding	9.252	6.766	4.223	6.068	4.985	2.672	6.101	6.325	4.786	5.682	5.131	3.149	6.555	8.842	6.469	6.596	8.336	5.834	6.462	5.231	3.633	5.636	4.815	3.934	7.800
7564	chr19	10309891	10315757	+	0	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-7947	NM_198114	269060	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	4.437	0.940	0.292	1.290	0.480	0.253	10.545	10.777	nan	1.670	0.319	0.678	5.615	5.303	5.152	8.691	4.130	4.680	0.421	0.486	0.335	1.150	0.583	0.596	1.947
15196	chr9	64637541	64640520	+	0	NA	intron (NM_172522, intron 5 of 22)	intron (NM_172522, intron 5 of 22)	98726	NM_017382	53869	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	4.875	4.227	3.121	4.437	3.059	2.158	1.706	1.580	2.705	2.993	2.202	0.966	1.657	3.396	2.079	2.195	2.124	2.681	nan	2.645	2.366	1.243	0.893	0.805	1.750
5987	chr16	31017604	31023254	+	0	NA	intron (NM_198626, intron 2 of 3)	intron (NM_198626, intron 2 of 3)	61003	NM_198626	268880	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	5.972	1.376	0.468	3.271	1.247	0.394	4.030	5.247	5.223	7.397	1.512	1.232	10.386	8.229	4.382	9.022	3.298	5.600	1.700	0.615	0.399	1.659	nan	0.430	8.429
9667	chr3	105977493	105978757	+	0	NA	intron (NM_007696, intron 5 of 10)	intron (NM_007696, intron 5 of 10)	4323	NM_007696	12659	Mm.431947	NM_007696	ENSMUSG00000074340	Ovgp1	120kDa|AU016433|AU019448|Chit5|MOGP|OGP|muc9	oviductal glycoprotein 1	protein-coding	3.813	1.045	0.792	2.638	13.540	13.341	6.083	2.318	4.643	3.247	1.025	0.548	5.867	6.990	2.812	3.316	5.815	3.135	0.754	1.973	2.773	0.230	0.950	1.816	1.817
637	chr1	135100547	135102744	+	0	NA	intron (NM_001033409, intron 1 of 17)	intron (NM_001033409, intron 1 of 17)	3631	NM_001033409	329252	Mm.279594	NM_001033409	ENSMUSG00000042793	Lgr6	A530037C04Rik|D830026M09	leucine-rich repeat-containing G protein-coupled receptor 6	protein-coding	8.414	0.724	0.203	nan	3.236	2.027	7.601	9.093	3.654	3.284	2.751	3.252	9.882	8.308	6.268	9.405	8.052	5.728	3.045	1.219	1.345	1.826	4.464	4.948	8.364
5566	chr15	91020298	91022553	+	0	NA	intron (NM_001109040, intron 1 of 36)	intron (NM_001109040, intron 1 of 36)	28526	NM_001109041	16564	Mm.41379	NM_016705	ENSMUSG00000022629	Kif21a	-	kinesin family member 21A	protein-coding	5.115	1.469	0.800	4.311	2.086	0.642	nan	2.241	nan	2.598	1.520	0.683	1.081	2.133	2.363	2.354	nan	3.010	1.454	2.177	1.064	nan	0.325	0.254	3.327
2066	chr11	32334632	32336831	+	0	NA	Intergenic	Intergenic	-12080	NM_177364	268396	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	2.363	1.858	1.133	1.755	3.831	2.575	4.236	2.409	2.366	2.769	1.988	1.733	2.911	3.893	2.668	3.109	2.644	2.695	0.684	0.897	0.820	0.789	0.473	0.629	1.917
8027	chr2	25977811	25979819	+	0	NA	intron (NM_001276359, intron 1 of 16)	intron (NM_001276359, intron 1 of 16)	4467	NM_001276360	227634	Mm.36834	NM_001115076	ENSMUSG00000026933	Camsap1	9530003A05Rik|C77823|PRO2405	calmodulin regulated spectrin-associated protein 1	protein-coding	3.820	3.332	1.017	7.069	1.826	1.089	4.147	7.310	3.427	8.410	2.815	2.660	4.952	4.464	6.111	8.688	3.477	6.287	2.946	1.352	1.996	3.393	2.263	3.440	11.605
10556	chr4	128708097	128714794	+	0	NA	intron (NM_001195130, intron 6 of 14)	intron (NM_001195130, intron 6 of 14)	-16126	NM_001195083	54383	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic-like 2 (Drosophila)	protein-coding	8.376	13.690	7.289	5.921	7.760	5.409	5.506	4.685	4.048	5.752	4.440	2.408	5.842	9.280	nan	6.279	4.183	5.452	2.318	2.590	2.464	2.556	2.267	2.375	8.125
12103	chr6	29796824	29811351	+	0	NA	intron (NM_001171000, intron 1 of 16)	intron (NM_001171000, intron 1 of 16)	35644	NM_001171000	74340	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	5.781	1.578	1.105	3.183	2.920	1.927	8.099	8.313	5.695	5.697	2.788	3.437	9.724	8.681	8.533	10.629	8.863	6.822	nan	1.064	0.818	0.815	1.188	0.800	5.517
10286	chr4	97313848	97317801	+	0	NA	Intergenic	L1Md_T|LINE|L1	-266119	NM_001122952	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.615	nan	0.457	0.667	0.197	0.062	0.327	0.468	nan	nan	0.381	0.127	0.152	0.509	nan	0.713	0.295	0.816	3.525	1.611	0.625	7.536	1.327	1.014	0.734
2679	chr11	95203740	95206949	+	0	NA	Intergenic	Intergenic	-56185	NM_053093	93670	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	4.394	3.671	1.545	4.602	2.497	0.850	3.225	3.262	4.568	6.176	1.104	0.753	5.216	6.883	5.620	7.098	4.138	7.332	1.604	nan	0.525	0.800	nan	nan	6.057
1232	chr10	41104137	41107565	+	0	NA	Intergenic	Intergenic	-34267	NM_199058	140741	Mm.290693	NM_199058	ENSMUSG00000046922	Gpr6	AI852874|Gm233	G protein-coupled receptor 6	protein-coding	2.220	9.182	7.652	1.465	0.852	0.758	0.718	0.559	1.209	1.419	0.448	0.480	0.526	0.649	1.013	1.319	1.573	1.205	1.139	1.628	1.252	0.449	0.644	0.752	1.172
6554	chr17	34066018	34068588	+	0	NA	TTS (NM_009926)	TTS (NM_009926)	-25076	NM_008206	15001	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	10.259	12.491	3.963	9.826	5.256	2.865	10.042	7.017	4.794	8.595	6.341	3.619	6.572	10.343	9.513	11.385	6.921	7.920	5.047	3.430	3.465	5.300	3.395	4.107	17.921
2941	chr11	109332143	109335855	+	0	NA	Intergenic	B1F1|SINE|Alu	-12868	NR_027883	67927	Mm.394490	NR_027883	ENSMUSG00000099630	1700096J18Rik	-	RIKEN cDNA 1700096J18 gene	ncRNA	6.754	16.468	6.785	6.758	4.991	3.007	5.342	4.380	4.209	10.973	3.745	3.234	4.605	6.280	6.880	6.765	5.311	5.595	6.435	5.007	5.447	8.379	4.618	4.675	10.800
5978	chr16	30440230	30443944	+	0	NA	Intergenic	(TCTG)n|Simple_repeat|Simple_repeat	-53557	NM_001128096	224088	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	2.569	0.646	0.657	0.984	1.548	1.067	3.805	5.554	1.248	1.065	1.060	0.997	nan	2.498	1.845	nan	2.337	2.262	0.889	1.367	0.802	1.808	nan	0.919	1.494
10546	chr4	128563139	128572068	+	0	NA	TTS (NM_001281955)	TTS (NM_001281955)	42495	NM_177758	269585	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding	2.994	0.877	0.290	3.836	2.279	1.199	1.527	4.014	2.164	3.084	1.154	0.496	3.334	4.123	nan	3.963	1.626	4.248	4.693	2.676	1.723	9.062	2.758	1.821	5.309
7668	chr19	25110577	25113080	+	0	NA	intron (NM_028785, intron 14 of 47)	intron (NM_028785, intron 14 of 47)	112299	NM_028785	76088	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	7.033	1.287	0.809	nan	1.654	0.982	5.536	5.361	2.535	3.213	nan	0.631	4.978	6.971	3.367	3.625	7.117	4.901	nan	1.613	0.822	0.696	nan	0.820	4.481
15405	chr9	96760409	96764815	+	0	NA	Intergenic	T-rich|Low_complexity|Low_complexity	-2950	NR_102295	319707	Mm.392191	NR_102293	ENSMUSG00000101581	C430002N11Rik	-	RIKEN cDNA C430002N11 gene	ncRNA	3.984	1.020	0.636	3.962	1.946	1.046	4.702	5.400	5.154	5.802	3.426	1.858	5.356	7.179	6.784	7.142	4.770	5.181	2.089	1.702	1.264	2.001	1.102	0.986	5.651
1639	chr10	94780578	94787193	+	0	NA	intron (NM_029852, intron 13 of 15)	L1_Mus3|LINE|L1	95095	NM_029852	77048	Mm.296971	NM_029852	ENSMUSG00000020024	Cep83	2600001G24Rik|4921537D05Rik|5730513H21Rik|Ccdc41	centrosomal protein 83	protein-coding	11.811	3.635	1.530	9.335	7.692	4.301	8.192	3.801	7.473	10.663	nan	5.122	6.577	10.541	8.313	8.019	7.313	12.817	nan	1.948	1.449	nan	2.425	1.819	14.320
13438	chr7	97377956	97380706	+	0	NA	intron (NM_199035, intron 3 of 12)	intron (NM_199035, intron 3 of 12)	7714	NM_199035	381903	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	4.458	0.686	0.329	3.431	4.016	2.588	6.176	7.063	5.665	7.549	1.095	1.348	7.901	8.824	8.391	6.574	3.566	7.511	nan	1.246	0.679	1.662	0.895	0.312	5.089
3872	chr13	20996740	20998199	+	0	NA	intron (NM_012054, intron 15 of 20)	(GTTTG)n|Simple_repeat|Simple_repeat	75830	NM_146535	258528	Mm.377554	NM_146535	ENSMUSG00000042869	Olfr1370	MOR256-14	olfactory receptor 1370	protein-coding	3.599	0.571	0.448	1.303	1.311	0.540	3.100	1.481	2.158	2.966	0.281	0.153	2.959	4.166	3.425	3.501	nan	4.036	0.803	0.719	0.138	0.412	0.735	0.912	4.732
1035	chr1	193288440	193289926	+	0	NA	Intergenic	Lx9|LINE|L1	-12811	NM_008484	16780	Mm.435441	NM_008484	ENSMUSG00000026639	Lamb3	-	laminin, beta 3	protein-coding	4.017	3.810	1.749	2.512	1.971	0.119	2.598	1.854	1.757	2.871	0.792	0.614	3.569	4.936	2.548	4.964	3.478	4.874	1.060	0.380	0.699	0.443	nan	0.188	nan
5197	chr15	58041438	58048072	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-10461	NM_029418	75758	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	7.106	4.787	1.116	nan	2.337	1.616	6.448	11.520	nan	nan	5.079	2.724	8.204	5.784	6.373	5.815	5.276	5.117	5.036	3.402	3.095	6.224	4.856	3.912	6.687
12611	chr6	114864099	114872610	+	0	NA	intron (NM_177683, intron 2 of 4)	intron (NM_177683, intron 2 of 4)	53398	NM_177683	232334	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	9.440	6.836	3.333	8.928	6.181	4.122	7.792	7.370	7.365	7.593	6.153	3.344	6.281	8.063	7.953	11.148	9.260	9.576	2.904	2.992	2.438	2.492	nan	1.797	11.600
3367	chr12	59367190	59370151	+	0	NA	Intergenic	L1Md_T|LINE|L1	-149187	NM_001033156	70611	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	3.547	1.868	0.583	7.623	1.056	0.416	1.067	1.001	2.545	2.766	1.216	0.526	1.515	2.099	nan	3.263	1.348	4.697	1.486	0.611	0.248	1.448	0.995	0.667	4.317
13166	chr7	52142977	52144112	+	0	NA	Intergenic	MERVL-int|LTR|ERVL	-127828	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	1.456	0.904	0.351	1.383	4.289	2.248	1.439	7.191	1.177	2.335	0.934	2.471	1.688	3.696	1.917	1.281	1.591	1.795	1.486	0.993	1.499	3.463	0.996	1.005	1.157
3964	chr13	35907731	35910265	+	0	NA	Intergenic	L1MA4|LINE|L1	-2651	NM_145938	208366	Mm.35545	NM_145938	ENSMUSG00000021418	Rpp40	D8Bwg1265e|Rnasep1	ribonuclease P 40 subunit	protein-coding	3.311	9.556	3.113	2.548	1.852	0.980	3.251	nan	nan	3.113	0.480	0.578	2.017	2.815	3.045	3.838	1.721	4.258	0.844	0.615	0.522	0.906	0.648	0.289	5.415
6537	chr17	31977482	31982268	+	0	NA	intron (NM_028902, intron 7 of 7)	intron (NM_028902, intron 7 of 7)	54633	NM_028902	74377	Mm.75856	NM_028902	ENSMUSG00000002076	Hsf2bp	4932437G14Rik	heat shock transcription factor 2 binding protein	protein-coding	6.650	5.174	1.386	7.745	6.021	3.487	5.883	7.999	7.001	9.898	12.988	4.795	5.992	9.976	6.556	8.524	5.631	6.724	1.328	1.566	1.496	2.331	1.379	0.731	9.402
13627	chr7	119822116	119824525	+	0	NA	intron (NM_001004187, intron 7 of 12)	L1_Mus3|LINE|L1	29133	NM_001004187	434234	Mm.38237	NM_028129	ENSMUSG00000030924	2610020H08Rik	-	RIKEN cDNA 2610020H08 gene	protein-coding	6.906	2.200	0.444	9.896	3.357	2.592	7.330	10.405	6.368	16.938	7.036	4.649	9.680	9.737	10.565	10.250	7.274	11.052	5.818	1.051	2.051	6.455	1.733	4.192	13.781
6901	chr17	84105161	84109601	+	0	NA	Intergenic	Intergenic	28721	NR_045458	74473	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	8.049	19.295	8.560	7.547	6.652	5.445	8.746	7.002	5.727	9.973	8.525	3.769	6.589	7.903	6.462	8.771	6.879	6.656	3.046	2.671	3.907	3.799	3.020	4.056	11.401
11147	chr5	33719116	33720924	+	0	NA	Intergenic	(A)n|Simple_repeat|Simple_repeat	-1704	NM_001205270	14184	Mm.6904	NM_008010	ENSMUSG00000054252	Fgfr3	CD333|FR3|Fgfr-3|Flg-2|HBGFR|Mfr3|sam3	fibroblast growth factor receptor 3	protein-coding	3.851	9.093	4.740	4.887	2.032	1.813	3.998	3.205	2.462	3.315	2.646	1.784	2.677	4.058	nan	5.491	3.461	nan	2.993	2.278	1.682	3.087	2.894	1.486	4.535
11697	chr5	123762547	123765204	+	0	NA	intron (NM_001042421, intron 10 of 63)	intron (NM_001042421, intron 10 of 63)	14149	NM_001042421	208628	Mm.441089	NM_001042421	ENSMUSG00000029414	Kntc1	D330012D13|jgl	kinetochore associated 1	protein-coding	0.827	4.815	4.928	1.273	0.677	0.566	0.871	0.498	0.765	nan	0.553	0.515	0.352	0.855	nan	0.786	nan	nan	9.539	6.105	6.330	7.525	8.745	8.353	nan
4378	chr13	108178155	108181585	+	0	NA	intron (NM_028042, intron 9 of 11)	intron (NM_028042, intron 9 of 11)	21132	NM_028042	71991	Mm.212208	NM_028042	ENSMUSG00000021694	Ercc8	2410022P04Rik|2810431L23Rik|4631412O06Rik|B130065P18Rik|Ckn1|Csa	excision repaiross-complementing rodent repair deficiency, complementation group 8	protein-coding	5.464	nan	0.460	4.781	5.933	3.326	3.234	6.146	5.410	6.209	3.623	0.732	5.323	9.219	5.311	5.543	2.934	nan	1.084	0.821	0.697	nan	1.067	0.676	2.726
5529	chr15	85463997	85467785	+	0	NA	Intergenic	Intergenic	37336	NM_001256072	328577	Mm.212960	NM_001256072	ENSMUSG00000096607	7530416G11Rik	-	RIKEN cDNA 7530416G11 gene	protein-coding	6.039	4.187	1.564	nan	3.593	2.127	7.526	10.094	nan	5.794	4.684	2.586	8.059	8.666	7.514	6.816	6.436	5.834	nan	2.433	2.028	nan	3.463	2.643	7.207
13298	chr7	75420889	75434244	+	0	NA	Intergenic	Intergenic	-27968	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	2.504	7.412	2.723	nan	1.596	0.772	0.642	0.622	1.037	1.351	0.814	0.628	0.510	1.134	1.049	nan	1.333	1.018	0.958	1.733	1.480	0.855	1.024	0.976	nan
11102	chr5	30832498	30839868	+	0	NA	intron (NM_133350, intron 1 of 6)	intron (NM_133350, intron 1 of 6)	21542	NM_133350	100732	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0.542	0.679	0.334	nan	0.271	0.157	0.397	0.415	0.479	0.460	0.305	0.123	0.120	0.183	0.388	0.663	0.351	0.610	3.510	2.491	1.962	5.838	5.537	4.292	0.512
2995	chr11	116006710	116008260	+	0	NA	TTS (NM_016905)	TTS (NM_016905)	5234	NM_016905	14635	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	4.746	1.268	0.251	6.867	1.498	0.659	7.411	6.014	4.454	8.261	5.303	3.049	6.434	7.495	9.232	9.738	4.327	7.937	4.091	nan	1.594	6.658	1.249	1.650	11.706
5729	chr15	102346620	102350415	+	0	NA	intron (NM_153416, intron 2 of 15)	(GAAA)n|Simple_repeat|Simple_repeat	2242	NM_153416	223921	Mm.352946	NM_153416	ENSMUSG00000036678	Aaas	AAA|ADRACALA|D030041N15Rik|GL003	achalasia, adrenocortical insufficiency, alacrimia	protein-coding	8.039	10.185	3.959	6.800	3.363	1.333	7.662	8.642	4.033	6.613	5.346	2.884	7.052	8.773	7.351	7.797	6.153	6.667	6.246	4.336	3.116	5.636	4.752	4.752	9.496
7928	chr2	4476393	4484932	+	0	NA	intron (NM_001347086, intron 4 of 24)	RMER1B|Other|Other	-79092	NM_001177844	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	8.752	3.401	1.633	7.041	4.225	2.201	5.971	5.450	5.394	5.375	2.290	1.953	8.392	7.322	6.470	9.092	7.484	8.656	5.729	3.087	2.783	4.727	4.589	3.231	9.810
13756	chr7	133940651	133944045	+	0	NA	intron (NM_007400, intron 11 of 22)	intron (NM_007400, intron 11 of 22)	-159563	NM_001286031	101437	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	13.572	15.556	5.838	13.569	9.210	4.932	11.365	16.663	nan	14.604	10.756	7.393	11.448	15.691	11.956	12.132	9.765	11.336	8.155	5.247	3.386	8.383	4.538	3.503	18.084
10338	chr4	105766107	105771270	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-547525	NM_183225	329908	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	5.347	0.647	0.508	3.393	2.896	1.088	4.186	5.348	5.117	6.999	2.678	0.737	6.035	7.132	4.718	6.942	4.225	6.393	0.886	0.726	0.527	0.664	0.633	0.364	5.051
14244	chr8	63309167	63312032	+	0	NA	intron (NM_023689, intron 7 of 11)	L1Md_T|LINE|L1	359254	NM_023689	72902	Mm.334552	NM_023689	ENSMUSG00000054162	Spock3	2900045C01Rik|AI428471|mKIAA4039	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	protein-coding	2.301	0.972	0.527	0.720	0.598	0.175	2.468	2.396	1.174	1.761	1.919	1.746	2.389	1.419	4.132	4.581	3.758	2.528	nan	1.094	0.649	2.229	0.345	0.312	nan
14764	chr8	126719281	126720548	+	0	NA	Intergenic	LTR72_RN|LTR|ERV1	-126478	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	2.698	1.690	0.173	3.308	2.258	0.799	3.985	2.363	2.774	3.306	2.149	0.993	2.772	3.428	4.745	4.271	2.003	2.918	nan	0.655	0.290	nan	0.518	nan	5.795
1712	chr10	110649353	110653462	+	0	NA	Intergenic	Intergenic	50757	NR_028438	109335	Mm.367727	NR_028438		9230102K24Rik	-	RIKEN cDNA 9230102K24 gene	ncRNA	nan	1.294	0.947	1.163	0.995	0.544	0.964	1.573	nan	1.282	5.796	4.138	1.925	0.999	1.368	1.107	1.613	1.570	0.836	0.800	0.282	0.454	0.704	0.322	0.625
8821	chr2	152890096	152894088	+	0	NA	intron (NM_001141977, intron 16 of 17)	intron (NM_001141977, intron 16 of 17)	-19260	NM_001081044	228785	Mm.250604	NM_001081044	ENSMUSG00000027470	Mylk2	9830004H17Rik|BB138278	myosin, light polypeptide kinase 2, skeletal muscle	protein-coding	2.891	1.063	0.455	6.709	2.099	0.861	1.247	0.949	1.496	1.974	1.251	0.350	0.387	1.561	1.225	1.932	1.064	2.982	nan	1.398	0.459	0.451	0.724	0.480	2.912
8243	chr2	52276539	52281469	+	0	NA	exon (NM_010889, exon 45 of 157)	exon (NM_010889, exon 45 of 157)	-11998	NR_040620	78049	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	8.210	9.303	5.876	6.233	3.937	2.891	5.641	8.901	5.871	9.500	2.872	2.948	6.383	6.898	6.210	7.559	8.365	7.257	3.328	2.278	2.352	4.438	2.230	2.735	7.944
2344	chr11	67880696	67882350	+	0	NA	intron (NM_001291049, intron 9 of 14)	intron (NM_001291049, intron 9 of 14)	40630	NM_001291049	216835	Mm.158885	NM_173754	ENSMUSG00000020905	Usp43	-	ubiquitin specific peptidase 43	protein-coding	0.892	0.613	0.517	1.869	1.260	1.481	0.362	0.292	0.537	1.242	0.151	0.308	1.616	3.505	2.464	1.578	0.848	1.312	0.616	0.482	0.389	0.605	nan	0.940	nan
5624	chr15	98747129	98749436	+	0	NA	intron (NM_007478, intron 1 of 4)	intron (NM_007478, intron 1 of 4)	14836	NM_007478	11842	Mm.221298	NM_007478	ENSMUSG00000051853	Arf3	5430400P17Rik|AI854770	ADP-ribosylation factor 3	protein-coding	7.588	9.542	5.106	7.594	6.721	6.528	8.250	12.296	3.920	6.526	4.607	4.277	7.867	8.903	6.295	7.874	9.471	5.493	4.824	4.420	5.930	5.208	4.722	5.450	7.931
9966	chr4	24742905	24746648	+	0	NA	intron (NM_001033531, intron 3 of 9)	Tigger7|DNA|TcMar-Tigger	106310	NM_001163020	212390	Mm.412074	NM_001033531	ENSMUSG00000040387	Klhl32	6430524H05Rik|D4Ertd389e|Gm1356|mKIAA1900	kelch-like 32	protein-coding	nan	0.315	0.383	0.156	0.285	0.132	0.240	0.270	0.229	0.227	0.198		0.134	0.126	0.191	0.376	0.349	0.321	1.725	1.223	0.889	2.924	1.159	0.687	0.267
2552	chr11	83715340	83718580	+	0	NA	Intergenic	B3A|SINE|B2	7956	NM_007969	14038	Mm.1650	NM_007969	ENSMUSG00000000983	Wfdc18	Expi|Kal1|WDNM1	WAP four-disulfide core domain 18	protein-coding	2.280	1.284	0.369	nan	2.191	1.328	4.667	3.394	2.670	2.790	0.953	0.964	4.477	5.774	6.083	6.641	3.619	3.434	0.644	0.508	0.473	nan	0.542	0.328	3.775
5007	chr15	3366548	3368278	+	0	NA	intron (NM_001048178, intron 3 of 8)	intron (NM_001048178, intron 3 of 8)	-63887	NM_001166063	100039139	Mm.455610	NM_001166063	ENSMUSG00000091119	Ccdc152	ENSMUSG00000071814	coiled-coil domain containing 152	protein-coding	4.800	0.716	0.354	2.709	2.260	0.960	2.780	8.741	4.546	4.214	0.938	0.923	7.738	5.398	2.124	2.955	4.342	5.272	1.046	1.219	0.354	0.779	1.132	0.909	0.875
6933	chr17	86268796	86270619	+	0	NA	intron (NM_011104, intron 1 of 14)	intron (NM_011104, intron 1 of 14)	17471	NR_045435	72104	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	2.347	0.572	0.606	1.168	0.469	0.066	2.607	1.202	2.012	1.161	1.520	0.286	1.369	0.806	2.400	4.663	3.602	2.034	0.702	0.457	0.383	0.693	0.905	0.356	6.418
7751	chr19	38076532	38080618	+	0	NA	Intergenic	Intergenic	-18504	NM_181748	107221	Mm.35288	NM_181748	ENSMUSG00000054200	Ffar4	AI552415|GT01|Gpr120|Gpr129|KPG_013|O3far1|Pgr4	free fatty acid receptor 4	protein-coding	3.013	2.152	1.054	3.695	3.453	2.524	1.797	nan	2.973	2.417	8.325	4.937	2.076	3.650	3.112	2.649	nan	3.801	0.620	0.684	0.510	0.770	0.380	0.258	3.859
12724	chr6	127737190	127745251	+	0	NA	intron (NM_201371, intron 1 of 9)	intron (NM_201371, intron 1 of 9)	27939	NM_201371	381813	Mm.39750	NM_201371	ENSMUSG00000030350	Prmt8	Hrmt1l3|Hrmt1l4	protein arginine N-methyltransferase 8	protein-coding	2.577	nan	0.526	3.029	3.331	1.354	5.385	4.578	3.274	5.071	0.668	0.336	6.296	9.535	6.778	8.488	3.993	2.684	0.541	0.591	0.274	0.579	0.476	0.352	6.442
11829	chr5	137030171	137035875	+	0	NA	3' UTR (NM_001039385, exon 2 of 2)	3' UTR (NM_001039385, exon 2 of 2)	2728	NM_001039385	381677	Mm.389697	NM_001039385	ENSMUSG00000037428	Vgf	Gm1052	VGF nerve growth factor inducible	protein-coding	4.327	1.051	0.790	3.082	2.989	2.382	4.130	4.290	2.895	3.276	2.693	1.508	3.491	5.552	4.424	4.205	3.568	4.055	0.761	1.018	0.907	0.997	nan	0.727	4.230
14012	chr8	11774023	11776075	+	0	NA	intron (NM_001113517, intron 2 of 18)	L1MDa|LINE|L1	16719	NM_001113518	54126	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	5.887	1.363	0.228	3.891	1.980	0.771	4.707	7.035	2.938	3.452	5.142	2.220	5.469	5.385	5.761	6.797	5.571	5.864	3.421	1.929	0.972	6.427	1.123	0.354	9.491
4452	chr14	8731300	8733902	+	0	NA	Intergenic	Intergenic	66211	NR_045968	74859	Mm.84041	NR_045968	ENSMUSG00000097898	4930455B14Rik	1700027C12Rik	RIKEN cDNA 4930455B14 gene	ncRNA	2.925	1.945	1.150	3.694	1.935	0.953	3.343	5.053	3.017	3.623	2.912	2.283	2.715	4.995	4.380	6.086	2.479	4.231	1.952	1.475	0.804	2.554	1.472	0.630	6.124
12984	chr7	20307648	20311384	+	0	NA	Intergenic	RLTR6-int|LTR|ERV1	24549	NM_001167158	100042964	Mm.484995	NM_001167158	ENSMUSG00000095745	Gm4133	Vmn1r98	predicted gene 4133	protein-coding	2.741	0.795	0.406	2.715	2.008	1.233	3.979	6.472	1.233	1.808	1.212	1.302	3.892	6.598	3.704	3.062	3.233	3.973	2.792	3.525	2.557	6.346	1.063	0.898	4.724
12114	chr6	30600892	30607211	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	-6959	NM_144537	74649	Mm.159276	NM_144537	ENSMUSG00000029788	Cpa5	4930430M09Rik	carboxypeptidase A5	protein-coding	0.691	0.915	0.560	1.293	0.166	0.135	0.426	0.534	0.755	0.580	0.539	0.395	0.188	0.333	0.500	nan	0.746	nan	5.193	5.324	2.689	9.584	2.639	2.100	0.737
14934	chr9	31043481	31045740	+	0	NA	intron (NM_172765, intron 1 of 5)	B2_Mm1a|SINE|B2	13966	NM_172765	235132	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	1.564	0.522	0.884	1.175	2.071	1.515	1.459	1.501	2.969	3.060	0.504	1.128	0.551	0.843	0.790	nan	1.751	1.181	2.886	5.886	4.701	3.236	6.492	7.450	1.228
5456	chr15	80926562	80928326	+	0	NA	intron (NM_144812, intron 23 of 24)	intron (NM_144812, intron 23 of 24)	-12595	NR_039573	100628612		NR_039573	ENSMUSG00000092868	Mir5113	mir-5113|mmu-mir-5113|mu-mir-5113	microRNA 5113	ncRNA	4.302	3.914	2.246	2.320	2.452	2.047	4.715	7.937	3.194	2.910	2.818	1.571	4.036	4.468	4.427	3.138	5.609	4.357	1.066	1.587	1.042	nan	1.695	0.655	3.359
14906	chr9	21540369	21543171	+	0	NA	intron (NM_001198794, intron 6 of 6)	intron (NM_001198794, intron 6 of 6)	-5124	NM_021531	59035	Mm.178115	NM_021531	ENSMUSG00000032185	Carm1	Prmt4	coactivator-associated arginine methyltransferase 1	protein-coding	3.540	1.111	0.771	3.090	1.311	0.748	3.555	5.145	3.939	4.394	1.504	1.394	5.395	5.452	4.613	6.403	3.041	5.092	2.396	1.695	1.789	1.182	3.118	2.785	8.559
10946	chr4	150550610	150558792	+	0	NA	intron (NM_001085492, intron 11 of 22)	intron (NM_001085492, intron 11 of 22)	97473	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.563	nan	0.158	0.677	0.303	0.255	0.270	0.303	0.572	0.892	0.254	0.302	0.411	0.729	0.542	0.636	0.238	0.752	4.639	1.547	1.193	6.902	2.550	1.830	0.627
12801	chr6	136446591	136448858	+	0	NA	Intergenic	ORR1A0-int|LTR|ERVL-MaLR	-32155	NM_001201390	100502936	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	5.851	8.304	3.596	4.188	6.469	4.192	2.676	3.272	4.537	3.769	3.962	3.556	3.831	4.728	4.427	4.085	3.230	4.581	nan	1.530	1.710	1.641	1.071	0.864	5.886
14809	chr8	129131306	129144752	+	0	NA	intron (NM_001168369, intron 8 of 14)	ORR1E-int|LTR|ERVL-MaLR	70895	NM_001168369	75453	Mm.286964	NM_029292	ENSMUSG00000056018	Ccdc7b	1700008F21Rik	coiled-coil domain containing 7B	protein-coding	8.329	nan	1.332	nan	3.785	2.490	nan	9.848	4.356	5.501	3.989	2.708	5.840	6.377	nan	8.059	5.085	nan	nan	1.183	1.496	nan	1.909	nan	nan
5585	chr15	95832841	95834427	+	0	NA	intron (NM_001253813, intron 2 of 20)	intron (NM_001253813, intron 2 of 20)	42791	NM_001253813	105722	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	5.771	0.649	0.689	1.589	0.688	0.548	9.721	3.617	2.022	1.744	3.030	3.101	5.397	3.593	2.727	2.549	2.871	2.787	1.031	0.681	0.158	1.122	1.211	0.602	3.137
15298	chr9	72977571	72980919	+	0	NA	TTS (NM_001198789)	TTS (NM_001198789)	6131	NM_001198789	546143	Mm.260946	NM_001198789	ENSMUSG00000086158	Ccpg1os	EG546143|Gm5918	cell cycle progression 1, opposite strand	protein-coding	4.752	0.632	0.615	0.821	1.179	0.441	2.353	6.246	1.727	1.253	1.986	0.967	3.929	3.965	2.797	3.199	1.524	2.843	nan	0.078	0.330	0.566	0.308	0.253	4.685
3749	chr12	112991088	112998313	+	0	NA	intron (NM_028193, intron 1 of 17)	B2_Mm2|SINE|B2	5921	NM_028193	72308	Mm.196721	NM_028193	ENSMUSG00000011158	Brf1	2510002F24Rik|GTF3B|TAF3C|TAFIII90|TFIIIB90|mTFIIIB90	BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit	protein-coding	4.017	6.094	2.781	nan	2.698	1.919	3.140	nan	nan	nan	3.870	2.154	2.353	nan	3.463	4.797	3.204	3.555	7.466	6.196	5.319	9.410	8.870	8.020	nan
6029	chr16	33921372	33923224	+	0	NA	intron (NM_010580, intron 10 of 14)	intron (NM_010580, intron 10 of 14)	44705	NM_009471	22247	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	5.403	2.210	0.517	3.256	1.374	0.932	4.644	3.154	2.686	2.111	2.541	1.002	3.225	3.982	4.738	5.323	2.017	2.409	2.398	0.714	0.628	1.071	1.359	0.718	4.748
11497	chr5	103946494	103947749	+	0	NA	Intergenic	IAPEy-int|LTR|ERVK	30267	NM_198030	243168	Mm.284944	NM_198030	ENSMUSG00000034528	Hsd17b13	AI047820|PAN1B-like|Pan1b	hydroxysteroid (17-beta) dehydrogenase 13	protein-coding	1.497	1.114	0.838	1.074	0.921	0.414	nan	2.901	2.566	1.908	2.624	2.475	1.951	3.397	2.913	1.785	1.728	2.234	1.582	0.923	0.350	0.720	0.602	0.370	0.991
3115	chr11	120408216	120411711	+	0	NA	intron (NM_199469, intron 9 of 15)	intron (NM_199469, intron 9 of 15)	27737	NM_001195023	217365	Mm.309520	NM_199469	ENSMUSG00000039703	Nploc4	AK129375|Npl4|mKIAA1499	NPL4 homolog, ubiquitin recognition factor	protein-coding	6.558	6.893	2.656	7.917	3.875	1.689	4.789	7.029	4.247	7.619	3.737	3.644	6.160	7.415	7.530	8.682	4.702	nan	4.866	nan	2.524	5.659	2.305	2.387	9.439
380	chr1	87720287	87727305	+	0	NA	Intergenic	ORR1B1|LTR|ERVL-MaLR	-32215	NM_029846	77040	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	5.012	3.098	2.128	3.581	2.078	1.281	3.334	2.542	3.717	3.751	1.500	1.070	5.691	4.702	4.157	5.925	4.109	5.536	1.466	0.887	0.755	nan	0.977	0.486	3.141
12495	chr6	94339286	94343824	+	0	NA	Intergenic	Intergenic	-57638	NM_001286785	14924	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	4.908	0.355	0.256	2.525	3.192	1.799	6.873	7.161	4.092	3.708	1.552	2.053	5.649	5.854	nan	6.791	5.443	5.682	nan	nan	0.641	1.051	0.967	0.503	3.840
3206	chr12	17030671	17032447	+	0	NA	Intergenic	MTE2b|LTR|ERVL-MaLR	-19832	NM_001201333	73667	Mm.159048	NM_001201332	ENSMUSG00000071398	2410004P03Rik	-	RIKEN cDNA 2410004P03 gene	protein-coding	0.583	8.854	6.240	0.504	0.309	0.235	0.387	0.211	0.585	0.254	0.256	0.227	0.186	0.322	0.301	0.650	0.572	0.746	0.455	0.566	0.333	0.216	0.717	0.320	0.465
965	chr1	183451276	183453174	+	0	NA	Intergenic	Intergenic	32977	NM_001308052	78772	Mm.29003	NM_030175	ENSMUSG00000053461	Hhipl2	4930507C10Rik|AW208802|Hhip3	hedgehog interacting protein-like 2	protein-coding	1.054	0.809	0.421	0.927	0.302	0.326	0.910	1.710	2.817	1.915	6.926	3.900	1.577	1.690	1.517	nan	0.810	1.213	1.105	0.724	0.214	1.152	0.849	0.250	0.844
1279	chr10	51911934	51916947	+	0	NA	Intergenic	Intergenic	-108062	NM_001300957	215031	Mm.87237	NM_153786	ENSMUSG00000049641	Vgll2	C130057C21Rik|VITO-1|Vito1|vgl-2	vestigial like family member 2	protein-coding	9.558	nan	0.519	1.801	3.062	2.013	7.767	5.832	4.052	3.221	0.498	0.511	9.408	9.092	7.673	7.843	11.058	6.045	nan	0.378	0.180	0.227	0.325	0.228	7.686
14181	chr8	42116489	42128041	+	0	NA	Intergenic	Lx8b|LINE|L1	294998	NR_045497	69966	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA	4.148	1.155	0.584	6.608	3.898	1.882	1.853	2.102	3.530	4.057	2.885	2.447	5.258	5.771	3.973	5.038	3.875	4.447	2.255	2.124	1.248	3.840	1.758	0.947	nan
286	chr1	72915639	72922616	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-44262	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	5.036	2.037	1.182	1.576	0.602	0.391	3.513	4.482	0.983	1.460	0.608	0.575	3.657	nan	3.802	nan	nan	nan	6.760	3.992	2.222	5.821	6.897	4.252	4.896
1395	chr10	68680592	68683557	+	0	NA	Intergenic	Intergenic	-41672	NM_177794	327766	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	4.510	2.282	1.429	3.257	4.284	1.337	3.650	8.231	2.943	3.382	0.932	0.900	4.908	5.557	3.519	4.568	5.033	4.065	1.556	1.644	1.082	1.679	0.723	0.634	3.769
1075	chr10	6233154	6235464	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-311909	NM_019958	56533	Mm.44606	NM_019958	ENSMUSG00000019775	Rgs17	6430507P11Rik|Rgsz2	regulator of G-protein signaling 17	protein-coding	3.776	1.562	0.622	4.634	1.656	0.960	1.750	2.543	2.005	2.107	1.530	1.598	1.088	2.218	2.436	2.503	1.429	3.025	1.302	1.572	0.580	1.735	1.156	0.596	3.037
10606	chr4	131696689	131700381	+	0	NA	Intergenic	PB1D11|SINE|Alu	139743	NM_011214	19273	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding	0.308	0.587	0.178	0.390	0.128	0.067	0.204	0.222	0.232	0.330	0.187	0.164	0.095	0.101	nan	0.260	0.166	0.186	6.301	2.685	2.557	5.420	2.821	2.710	0.546
2426	chr11	72390114	72391076	+	0	NA	3' UTR (NM_177776, exon 8 of 8)	3' UTR (NM_177776, exon 8 of 8)	1839	NR_105756	102465172		NR_105756	ENSMUSG00000098658	Mir6338	Gm27678|mmu-mir-6338	microRNA 6338	ncRNA	4.181	6.346	4.102	3.089	3.949	1.534	2.777	3.948	2.745	3.601	2.792	1.842	3.330	4.676	3.398	3.672	3.122	3.235	1.938	3.838	2.895	3.933	3.126	3.328	3.049
13262	chr7	72946718	72949017	+	0	NA	Intergenic	Intergenic	154201	NR_046024	625243	Mm.261798	NR_046024	ENSMUSG00000108383	Gm6567	-	predicted gene 6567	ncRNA	4.844	0.566	0.284	3.733	6.062	1.950	5.193	8.642	4.176	5.947	5.894	3.509	9.013	9.595	5.586	6.001	3.826	4.156	4.292	5.725	3.339	8.755	5.501	2.863	5.242
9922	chr4	8909062	8917394	+	0	NA	Intergenic	Intergenic	222822	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.599	1.082	0.580	0.781	0.286	0.104	0.241	nan	0.495	0.518	0.362	0.521	0.219	0.245	0.307	0.604	0.361	0.649	2.798	nan	2.040	4.993	2.485	1.707	0.495
11059	chr5	23021172	23023060	+	0	NA	intron (NM_001081231, intron 1 of 3)	G-rich|Low_complexity|Low_complexity	-275232	NR_027362	330052	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	2.495	0.539	0.625	nan	2.220	2.250	1.906	1.174	0.986	1.582	2.067	1.020	1.557	3.419	2.819	1.799	1.280	2.065	0.680	0.578	0.909	0.889	0.651	0.568	2.124
3125	chr11	120747633	120754024	+	0	NA	Intergenic	Intergenic	-18807	NM_007621	12409	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	5.254	nan	0.590	4.713	3.657	2.831	5.410	4.596	7.564	8.874	2.015	1.032	7.062	7.201	6.558	8.113	5.436	8.061	0.743	nan	0.902	0.642	0.679	0.612	8.190
13463	chr7	105451300	105453509	+	0	NA	Intergenic	Lx3C|LINE|L1	26673	NM_007627	12426	Mm.44513	NM_007627	ENSMUSG00000030898	Cckbr	CCK-BR|CCK2-R|CCK2R|CCKR-2	cholecystokinin B receptor	protein-coding	3.335	0.873	1.091	2.822	6.130	5.270	3.839	4.809	3.812	3.567	1.724	2.027	5.599	5.253	2.908	2.682	3.697	3.637	nan	1.286	0.697	0.328	1.091	0.953	1.361
13242	chr7	71039613	71074701	+	0	NA	Intergenic	Intergenic	-690411	NM_183261	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	8.382	5.669	2.219	10.069	6.976	4.530	5.042	9.302	6.589	7.386	4.713	2.551	6.625	10.494	5.997	7.366	4.917	8.351	2.206	1.815	1.535	2.412	1.926	1.515	7.955
4469	chr14	11271049	11273114	+	0	NA	Intergenic	L1MA7|LINE|L1	-10396	NR_105811	102466641		NR_105811	ENSMUSG00000099218	Mir5124b	Gm27681|mmu-mir-5124b	microRNA 5124b	ncRNA	0.788	7.571	4.586	0.463	0.156	0.236	0.629	0.996	0.796	0.472	0.565	0.533	0.211	0.506	0.630	0.626	0.630	0.928	0.795	0.776	0.445	0.749	0.924	0.697	0.405
6443	chr17	27108861	27110681	+	0	NA	intron (NM_080553, intron 33 of 57)	(CA)n|Simple_repeat|Simple_repeat	18526	NR_106142	102465779		NR_106142	ENSMUSG00000098826	Mir7677	Gm27400|mmu-mir-7677	microRNA 7677	ncRNA	6.892	10.909	3.945	8.301	6.230	3.420	8.838	5.635	3.973	7.947	6.011	4.437	4.692	7.122	6.777	9.410	6.656	6.374	4.217	2.408	4.579	4.832	4.523	5.076	11.068
6277	chr16	97820948	97823574	+	0	NA	intron (NM_144789, intron 6 of 23)	intron (NM_144789, intron 6 of 23)	28966	NM_144789	114604	Mm.328741	NM_144789	ENSMUSG00000014039	Prdm15	C21orf83|E130018M06Rik|ORF62|Zfp298	PR domain containing 15	protein-coding	2.333	0.579	0.111	1.400	1.207	0.739	2.024	5.259	2.449	2.016	1.909	1.527	4.076	3.328	3.936	4.342	1.780	3.753	nan	0.830	0.413	2.275	0.963	0.520	3.258
14953	chr9	32711320	32713465	+	0	NA	intron (NM_011808, intron 1 of 7)	intron (NM_011808, intron 1 of 7)	16350	NM_001038642	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	2.120	1.549	0.704	3.810	0.809	0.186	0.769	0.573	1.833	1.667	0.846	1.259	0.541	0.836	1.285	nan	1.403	2.338	1.347	0.498	0.246	0.942	0.595	0.569	1.323
13012	chr7	25955824	25967354	+	0	NA	Intergenic	(GGA)n|Simple_repeat|Simple_repeat	63931	NM_009999	13088	Mm.218749	NM_009999	ENSMUSG00000030483	Cyp2b10	Cyp2b|Cyp2b20|p16	cytochrome P450, family 2, subfamily b, polypeptide 10	protein-coding	0.423	2.229	1.535	0.438	0.503	0.183	0.453	0.535	0.353	0.518	0.317	0.211	0.158	0.358	0.406	0.495	0.435	0.441	3.385	5.880	3.268	6.130	5.758	4.919	0.551
15596	chr9	120682636	120688642	+	0	NA	Intergenic	RSINE1|SINE|B4	108308	NR_073359	76100	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	6.203	1.732	1.239	4.635	3.787	2.400	4.018	4.050	3.962	3.966	4.294	3.100	3.898	4.914	4.021	4.746	2.995	4.567	0.961	1.647	1.244	0.994	nan	0.916	4.565
6258	chr16	95677413	95680646	+	0	NA	Intergenic	Intergenic	-23378	NM_011809	23872	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	5.937	1.311	0.525	6.975	3.109	1.796	2.404	2.029	4.001	4.344	2.329	1.156	1.959	3.093	2.614	4.547	2.146	6.030	nan	1.933	1.086	1.260	1.148	0.685	3.950
1779	chr10	117309717	117311683	+	0	NA	Intergenic	Intergenic	-17832	NM_013590	17110	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	4.646	1.267	1.335	2.882	3.188	2.534	2.155	2.012	3.165	3.936	0.532	0.852	2.114	4.361	2.374	3.648	3.679	3.800	1.096	1.099	1.232	0.666	0.841	0.778	3.340
4563	chr14	28153393	28166898	+	0	NA	intron (NM_177814, intron 13 of 15)	L1MB8|LINE|L1	-345328	NM_009524	22418	Mm.287544	NM_009524	ENSMUSG00000021994	Wnt5a	8030457G12Rik|Wnt-5a	wingless-type MMTV integration site family, member 5A	protein-coding	4.759	4.941	1.485	5.794	2.237	1.331	2.483	5.631	4.392	3.108	5.051	3.046	2.276	3.105	2.537	nan	nan	4.020	2.174	2.233	1.474	nan	1.913	1.292	3.004
607	chr1	133617328	133621171	+	0	NA	TTS (NM_144530)	TTS (NM_144530)	-8969	NM_009227	20643	Mm.249110	NM_009227	ENSMUSG00000090553	Snrpe	AL022645|C76690|SME	small nuclear ribonucleoprotein E	protein-coding	0.924	1.235	0.489	nan	0.805	0.507	0.564	0.707	0.876	0.945	0.461	0.490	0.616	nan	0.772	nan	1.172	1.202	8.507	2.837	2.008	6.954	7.668	5.671	nan
1807	chr10	120908025	120913928	+	0	NA	Intergenic	(GGAA)n|Simple_repeat|Simple_repeat	-12005	NM_177092	320183	Mm.169755	NM_177092	ENSMUSG00000051236	Msrb3	D430026P16Rik|I-8-23|MsrB2	methionine sulfoxide reductase B3	protein-coding	9.151	11.864	4.076	9.296	4.599	3.386	7.614	6.744	6.447	9.490	4.828	3.945	7.045	8.900	8.824	9.058	6.172	10.064	3.478	1.892	2.038	3.492	2.713	2.758	12.863
11884	chr5	140286347	140292844	+	0	NA	intron (NM_010752, intron 9 of 17)	ID_B1|SINE|B4	31957	NM_010752	17120	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	2.762	0.658	0.395	2.373	1.782	1.370	4.073	4.203	2.151	2.469	0.831	1.029	2.243	3.875	3.408	4.110	2.371	3.216	6.966	2.997	3.857	7.162	nan	4.251	3.586
9101	chr2	179904260	179910260	+	0	NA	Intergenic	RMER19B|LTR|ERVK	69386	NM_001081092	228980	Mm.235542	NM_001081092	ENSMUSG00000039117	Taf4	135kDa|AI450312|TAFII130|TAFII135|Taf2c1|Taf4a	TATA-box binding protein associated factor 4	protein-coding	5.303	3.684	1.185	4.592	3.248	2.022	5.646	7.100	3.848	6.432	3.781	2.255	5.173	6.658	5.727	nan	4.705	nan	2.143	1.007	1.144	2.491	1.190	1.465	9.064
2902	chr11	106346046	106355645	+	0	NA	Intergenic	Intergenic	-1455	NM_133199	110880	Mm.432528	NM_133199	ENSMUSG00000001027	Scn4a	Nav1.4|SkM1|mH2	sodium channel, voltage-gated, type IV, alpha	protein-coding	4.003	2.687	1.495	nan	3.393	2.601	3.830	5.907	nan	nan	3.197	2.650	3.688	6.249	3.993	4.103	4.603	nan	2.249	1.605	1.624	nan	1.866	1.959	3.628
12369	chr6	85240532	85247812	+	0	NA	intron (NM_178639, intron 10 of 13)	intron (NM_178639, intron 10 of 13)	56241	NM_010131	13796	Mm.391473	NM_010131	ENSMUSG00000033726	Emx1	-	empty spiracles homeobox 1	protein-coding	2.570	2.267	1.166	nan	1.287	1.092	7.216	6.068	1.918	2.024	0.837	1.330	3.896	4.127	3.507	4.619	2.790	nan	nan	0.685	0.668	0.451	0.299	0.455	2.328
10359	chr4	107594095	107596517	+	0	NA	intron (NM_147221, intron 4 of 10)	intron (NM_147221, intron 4 of 10)	88856	NM_019872	56296	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	8.992	6.085	2.246	7.942	6.440	3.711	6.101	10.094	5.805	7.920	5.437	4.096	5.972	9.295	8.474	9.135	5.480	7.928	4.488	4.202	3.132	5.966	9.091	4.586	8.247
5472	chr15	81423235	81425947	+	0	NA	intron (NM_001347075, intron 2 of 9)	B2_Mm1t|SINE|B2	-16318	NM_021317	57755	Mm.440590	NM_021317	ENSMUSG00000047108	Dnajb7	4933424H20Rik|Dj5|mDj5	DnaJ heat shock protein family (Hsp40) member B7	protein-coding	3.405	1.474	0.809	nan	2.379	1.565	4.044	4.563	3.124	2.337	nan	1.242	3.604	3.640	3.156	4.206	3.312	2.812	1.421	1.100	0.754	nan	1.137	1.155	1.453
15877	chrX	163766326	163769180	+	0	NA	Intergenic	Intergenic	-6421	NM_028842	74264	Mm.39304	NM_028842	ENSMUSG00000083695	Rnf138rt1	-	ring finger protein 138, retrogene 1	protein-coding	3.191	2.666	0.896	1.749	1.237	0.627	1.038	2.136	1.624	2.325	1.073	0.651	1.217	2.130	1.728	4.011	1.437	1.981	0.548	0.940	0.344	0.748	0.573	0.066	1.158
3093	chr11	119819424	119821604	+	0	NA	TTS (NR_045313)	TTS (NR_045313)	13851	NR_045313	319454	Mm.442144	NR_045312	ENSMUSG00000085081	Rptoros	A430071A18Rik	regulatory associated protein of MTOR, complex 1, opposite strand	ncRNA	3.193	nan	0.416	4.973	2.435	1.157	1.693	2.193	2.534	3.324	0.935	0.858	1.915	3.829	3.234	3.970	1.656	4.821	1.640	nan	0.752	1.188	0.756	0.398	4.400
2508	chr11	78058383	78061731	+	0	NA	3' UTR (NM_001284228, exon 12 of 12)	3' UTR (NM_001284228, exon 12 of 12)	-12948	NR_029556	387162		NR_029556	ENSMUSG00000065401	Mir144	Mirn144|mir-144|mmu-mir-144	microRNA 144	ncRNA	8.115	9.641	4.325	7.475	5.489	3.229	8.748	10.152	4.396	6.099	6.314	4.422	7.194	8.438	7.536	8.495	7.089	6.888	4.002	2.550	nan	4.216	2.626	2.289	7.495
7397	chr18	75606392	75609190	+	0	NA	intron (NM_201354, intron 5 of 11)	intron (NM_201354, intron 5 of 11)	89905	NM_201354	269037	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	7.846	nan	1.195	5.378	4.443	2.791	10.110	12.689	3.511	6.006	2.805	1.750	8.158	10.349	7.104	7.731	6.014	5.099	0.635	nan	1.363	1.516	0.664	0.821	10.016
9408	chr3	85595273	85598133	+	0	NA	intron (NM_144896, intron 2 of 12)	intron (NM_144896, intron 2 of 12)	22574	NM_144896	229487	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	1.182	0.651	0.438	0.505	1.354	0.449	1.263	1.333	1.145	1.078	5.631	2.103	1.511	1.623	1.288	nan	1.050	1.777	nan	0.936	0.891	2.007	1.334	0.791	1.157
1073	chr10	4749308	4755108	+	0	NA	intron (NM_001302531, intron 3 of 8)	intron (NM_001302531, intron 3 of 8)	42050	NM_001302533	13982	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	7.147	0.867	0.662	4.441	1.419	0.552	3.152	1.287	3.881	3.990	0.931	0.677	4.067	3.028	2.455	3.015	3.813	5.242	0.810	0.794	0.417	0.514	0.355	0.189	3.815
5264	chr15	64213297	64214947	+	0	NA	intron (NM_010026, intron 3 of 30)	intron (NM_010026, intron 3 of 30)	98551	NM_001276462	13196	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	5.192	4.504	1.062	7.390	1.819	1.087	10.487	7.207	2.557	5.341	4.322	3.913	2.415	4.523	6.146	3.194	1.390	4.246	2.969	2.061	2.927	6.871	2.867	3.813	6.801
2187	chr11	53127784	53130311	+	0	NA	intron (NM_177059, intron 6 of 15)	intron (NM_177059, intron 6 of 15)	-8991	NR_046047	790909	Mm.404626	NR_046047	ENSMUSG00000087668	Gm11186	OTTMUSG00000000039	predicted gene 11186	ncRNA	4.832	1.438	0.788	3.991	2.395	2.243	3.197	6.006	2.859	2.904	2.087	2.083	3.067	3.236	2.076	2.113	2.803	3.115	nan	1.793	1.194	1.015	0.784	0.754	1.809
8279	chr2	60477335	60478928	+	0	NA	intron (NM_008867, intron 11 of 29)	intron (NM_008867, intron 11 of 29)	66606	NR_046065	100039176	Mm.261790	NR_046065	ENSMUSG00000087283	Gm13580	OTTMUSG00000012842	predicted gene 13580	ncRNA	3.032	0.541	0.202	1.535	1.188	0.233	3.156	2.766	2.073	2.831	2.795	1.650	2.851	4.258	2.311	4.487	2.143	5.296	0.494	0.256	0.079	0.678	0.382	0.114	2.875
3860	chr13	19694218	19696904	+	0	NA	intron (NM_181591, intron 4 of 16)	intron (NM_181591, intron 4 of 16)	2199	NM_001167909	73412	Mm.279939	NM_181591	ENSMUSG00000041138	Nme8	1700056P15Rik|Sptrx-2|Txndc3	NME/NM23 family member 8	protein-coding	1.718	0.459	0.279	1.146	0.925	0.874	2.661	1.075	1.249	1.280	0.495	0.355	4.864	4.928	2.471	3.609	nan	3.329	0.327	0.502	0.590	0.589	0.350	0.557	nan
11845	chr5	137851123	137854162	+	0	NA	intron (NM_133209, intron 4 of 4)	RSINE1|SINE|B4	5407	NM_133209	170741	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	2.981	0.592	0.457	1.954	3.373	1.419	7.657	4.636	3.515	8.112	0.355	0.858	4.341	6.480	3.593	4.135	2.826	3.992	0.446	0.483	0.186	0.368	nan	0.225	4.731
15764	chrX	92633572	92634902	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-34665	NM_173783	215641	Mm.327999	NM_173783	ENSMUSG00000067649	Mageb18	B430216B18Rik	melanoma antigen family B, 18	protein-coding	1.874	0.440		1.663	1.752	0.461	1.449	1.888	1.508	2.683	1.579	0.378	2.253	3.122	2.215	2.735	1.625	2.680	0.703	0.636	0.730	0.415	0.447	0.212	1.875
15164	chr9	61807436	61810522	+	0	NA	Intergenic	Intergenic	105531	NM_018853	56040	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	5.656	2.226	0.769	3.685	1.599	0.945	5.717	6.910	3.848	4.412	4.620	3.227	5.604	6.313	7.229	7.038	3.770	7.842	1.486	0.908	0.642	1.540	0.885	0.639	9.389
9797	chr3	127621141	127625050	+	0	NA	Intergenic	(TCC)n|Simple_repeat|Simple_repeat	-10050	NM_009718	11924	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	0.584	0.605	0.496	0.479	0.623	0.318	0.703	nan	0.726	0.539	0.604	0.582	0.393	0.623	0.712	nan	nan	nan	1.394	1.822	1.064	4.389	0.613	0.599	0.447
816	chr1	164375004	164381021	+	0	NA	intron (NM_138314, intron 9 of 13)	B1_Mur1|SINE|Alu	70340	NM_178071	171567	Mm.219428	NM_138314	ENSMUSG00000026575	Nme7	D530024H21Rik|Nm23-M7|Nm23-r7	NME/NM23 family member 7	protein-coding	4.873	0.450	0.264	nan	1.047	0.569	3.860	2.684	nan	1.397	0.361	0.913	nan	4.049	2.837	7.375	3.022	3.709	0.535	0.430	0.264	nan	nan	0.319	nan
5307	chr15	73440518	73442150	+	0	NA	Intergenic	Intergenic	-18143	NM_001130409	14083	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FAK|FRNK|Fadk|mKIAA4203|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	3.554	2.415	0.833	2.746	1.210	0.402	2.850	2.975	2.167	2.440	nan	0.601	5.217	4.613	3.591	3.539	2.761	4.601	0.946	0.751	0.558	1.335	0.802	0.131	6.315
4260	chr13	76235352	76236839	+	0	NA	Intergenic	L1_Mur3|LINE|L1	137361	NM_001081352	218343	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	mKIAA0372	tetratricopeptide repeat domain 37	protein-coding	7.767	9.715	2.696	6.556	3.625	1.726	5.337	5.969	5.898	6.807	5.256	3.249	5.091	6.651	7.354	8.993	3.932	6.784	3.700	3.199	1.178	4.439	3.026	2.681	10.277
4010	chr13	40994131	40996009	+	0	NA	Intergenic	Intergenic	-5940	NM_026550	68083	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	3.328	nan	0.686	2.321	1.629	0.918	3.183	4.493	2.136	2.546	3.294	1.568	2.897	3.606	2.909	2.701	1.299	2.593	0.986	0.936	1.341	0.956	0.926	0.471	2.849
10245	chr4	87696126	87697741	+	0	NA	Intergenic	Intergenic	109390	NM_001286158	70122	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.791	nan	1.249	0.532	0.707	0.407	0.779	nan	nan	0.632	0.512	0.663	0.312	0.439	0.136	0.661	0.626	nan	1.521	5.039	6.143	9.306	1.534	1.887	nan
14283	chr8	72372415	72375582	+	0	NA	intron (NM_001289859, intron 16 of 21)	intron (NM_001289859, intron 16 of 21)	47476	NM_001122832	13859	Mm.288894	NM_007944	ENSMUSG00000006276	Eps15l1	9830147J04Rik|AI593686|Eps15-rs|Eps15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding	4.628	1.023	0.514	2.040	6.333	5.423	2.841	4.089	3.035	2.982	4.081	2.210	2.063	4.960	3.269	3.538	2.482	4.227	nan	0.712	0.526	0.910	0.464	0.817	4.020
6864	chr17	75877332	75880858	+	0	NA	intron (NR_033456, intron 3 of 4)	intron (NR_033456, intron 3 of 4)	18072	NR_033456	100043885	Mm.127562	NR_033456		Gm4710	-	predicted gene 4710	ncRNA	0.907	8.078	5.767	1.134	0.670	0.138	nan	nan	nan	0.638	0.376	0.362	0.218	0.474	1.147	nan	0.942	0.820	0.337	0.673	0.435	0.389	0.351	0.228	0.437
6362	chr17	17371243	17372576	+	0	NA	Intergenic	(TTCC)n|Simple_repeat|Simple_repeat	-2423	NM_025934	67045	Mm.35117	NM_025934	ENSMUSG00000023852	Riok2	2010110K24Rik|2410085M17Rik	RIO kinase 2 (yeast)	protein-coding	5.618	6.282	3.362	4.988	2.333	2.003	4.020	4.905	2.875	2.791	2.142	1.058	2.289	3.769	3.731	5.044	3.267	4.064	2.304	1.670	1.036	2.162	1.801	2.114	5.368
1700	chr10	107504880	107509292	+	0	NA	Intergenic	B3|SINE|B2	-12357	NM_008657	17878	Mm.11	NM_008657	ENSMUSG00000035923	Myf6	MRF4|bHLHc4|herculin	myogenic factor 6	protein-coding	5.464	0.621	0.803	2.751	3.004	2.145	4.218	6.158	4.367	3.837	1.766	2.960	5.657	6.206	5.321	4.862	6.437	4.470	1.027	1.190	0.705	1.321	0.827	0.847	2.819
6723	chr17	49689678	49697776	+	0	NA	intron (NM_177052, intron 6 of 22)	intron (NM_177052, intron 6 of 22)	78555	NM_177052	319991	Mm.441340	NM_177052	ENSMUSG00000023999	Kif6	D130004B10Rik|D130084M03Rik	kinesin family member 6	protein-coding	2.456	0.636	0.335	2.089	0.911	0.541	4.130	0.936	3.002	3.867	0.420	0.489	4.275	4.378	1.830	4.248	3.067	3.720	0.320	0.535	0.424	0.793	0.207	0.119	4.261
12035	chr6	5391311	5396563	+	0	NA	intron (NM_023048, intron 2 of 5)	intron (NM_023048, intron 2 of 5)	10551	NM_023048	65255	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	4.821	1.434	0.512	5.776	6.253	3.743	5.024	9.983	4.621	5.881	3.807	1.288	8.707	9.455	7.643	5.775	5.857	4.464	0.726	1.053	0.551	2.007	0.518	0.364	nan
10102	chr4	55663355	55665049	+	0	NA	Intergenic	Intergenic	-131727	NM_010637	16600	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	5.437	2.499	0.919	7.963	3.575	1.619	2.921	3.422	3.202	5.657	3.167	2.602	2.499	5.320	3.974	3.593	2.219	4.302	nan	1.541	1.648	5.503	1.406	1.311	5.685
8450	chr2	91855523	91871361	+	0	NA	intron (NM_172669, intron 11 of 17)	B1_Mur4|SINE|Alu	-58747	NM_007699	12672	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	5.039	0.932	0.561	2.053	1.034	0.590	7.250	8.123	2.930	4.149	1.435	1.339	6.741	6.513	5.769	8.640	7.213	4.022	2.713	1.642	1.700	2.446	3.662	3.272	8.825
4240	chr13	72090950	72102922	+	0	NA	Intergenic	Intergenic	-133213	NM_010573	16371	Mm.316056	NM_010573	ENSMUSG00000060969	Irx1	-	Iroquois related homeobox 1 (Drosophila)	protein-coding	5.716	0.420	0.163	7.941	4.809	3.326	3.045	1.254	6.627	11.981	2.007	1.280	5.203	6.046	3.438	9.071	3.822	9.675	0.500	2.049	1.997	0.613	0.597	0.584	11.693
10599	chr4	131427893	131434598	+	0	NA	Intergenic	Intergenic	407033	NM_011214	19273	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding	5.478	7.293	2.880	6.482	4.912	4.259	5.064	4.793	4.731	7.084	4.222	3.365	4.386	5.852	nan	6.235	4.201	6.560	7.121	4.717	5.122	6.401	4.421	5.698	6.655
13271	chr7	73436968	73439501	+	0	NA	intron (NM_001081345, intron 37 of 38)	B3|SINE|B2	-62460	NR_040324	319783	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	3.494	1.125	0.425	4.430	3.369	1.332	6.379	5.023	4.876	6.749	5.146	2.093	5.346	6.562	5.405	6.817	3.447	5.013	0.733	0.587	0.473	0.752	0.265	0.235	4.720
9315	chr3	54525125	54528836	+	0	NA	Intergenic	Intergenic	165873	NM_015784	50706	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	3.819	8.698	5.166	nan	2.385	1.603	1.393	1.550	2.063	2.146	1.895	1.425	1.374	2.573	nan	nan	2.218	1.763	0.830	1.196	1.035	0.733	0.535	0.397	2.034
3261	chr12	32035250	32036645	+	0	NA	intron (NM_011158, intron 2 of 10)	intron (NM_011158, intron 2 of 10)	25332	NM_011158	19088	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	8.519	9.442	2.386	7.057	3.153	0.883	4.975	5.256	4.588	8.147	4.480	3.030	6.107	6.537	6.150	9.418	4.802	7.970	3.631	1.417	1.405	4.575	1.858	1.680	14.212
8116	chr2	31857361	31861415	+	0	NA	Intergenic	Intergenic	-13383	NM_178887	98970	Mm.32080	NM_178887	ENSMUSG00000026841	Fibcd1	AI448887	fibrinogen C domain containing 1	protein-coding	4.660	0.785	0.431	1.850	1.425	1.012	3.019	5.421	3.135	3.143	0.703	0.459	3.950	3.141	4.464	6.236	5.235	4.484	0.633	0.495	0.654	0.535	0.598	0.428	8.891
2131	chr11	48651347	48653669	+	0	NA	Intergenic	MT2B1|LTR|ERVL	-147852	NM_008143	14694	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	2.355	14.655	7.124	3.856	1.214	0.928	1.593	nan	1.895	3.474	1.779	1.006	1.720	2.173	2.642	nan	1.352	nan	nan	2.258	1.818	nan	nan	1.549	3.077
10423	chr4	117688617	117689638	+	0	NA	Intergenic	B3|SINE|B2	-6902	NM_023178	66233	Mm.29142	NM_023178	ENSMUSG00000009640	Dmap1	1500016M21Rik|DNMAP1|DNMTAP1|Dmtap1|mKIAA1425	DNA methyltransferase 1-associated protein 1	protein-coding	2.035	1.091		2.941	1.544	0.364	1.945	2.223	2.515	3.284	0.646	1.467	2.978	3.929	2.563	3.206	0.513	4.424	3.400	0.926	0.563	2.761	1.219	0.563	3.504
1339	chr10	60705309	60706024	+	0	NA	Intergenic	Intergenic	-9176	NM_023370	22295	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	0.463	1.169	1.573	0.300	0.134	0.169	0.329	0.251	0.539	0.312	0.319	0.146	0.211	0.005	0.232	0.351	0.561	0.276	8.311	5.602	4.996	4.671	8.026	9.411	nan
13856	chr7	145564482	145570502	+	0	NA	Intergenic	Intergenic	252657	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	4.520	nan	0.208	nan	0.957	0.446	6.371	5.240	2.999	3.251	1.173	1.317	5.304	3.568	3.401	4.348	4.156	4.164	2.132	1.101	0.529	1.845	nan	1.044	5.718
11072	chr5	24082178	24084524	+	0	NA	intron (NR_037304, intron 1 of 4)	intron (NR_037304, intron 1 of 4)	-17239	NM_026448	52323	Mm.273768	NM_026448	ENSMUSG00000028986	Klhl7	2700038B03Rik|D5Ertd363e|SBBI26	kelch-like 7	protein-coding	7.639	6.812	3.227	nan	6.235	3.162	6.765	6.486	4.253	6.546	4.477	2.864	5.386	8.584	6.805	7.231	6.881	5.922	3.615	2.888	3.419	4.083	4.540	3.254	8.300
9952	chr4	15916212	15917778	+	0	NA	TTS (NM_026172)	TTS (NM_026172)	25996	NR_105826	102466644		NR_105826	ENSMUSG00000098929	Mir6400	Gm27425|mmu-mir-6400	microRNA 6400	ncRNA	3.075	2.425	1.389	1.694	2.111	1.676	4.703	5.065	2.099	2.801	1.983	0.639	3.397	4.315	3.664	4.195	2.887	3.297	0.840	0.629	0.550	0.371	0.380	0.609	5.439
2338	chr11	67357969	67359424	+	0	NA	intron (NM_001081250, intron 27 of 38)	intron (NM_001081250, intron 27 of 38)	31593	NM_001081250	544791	Mm.461064	NM_001081250	ENSMUSG00000060180	Myh13	MyHC-eo	myosin, heavy polypeptide 13, skeletal muscle	protein-coding	2.567	1.957	0.781	2.769	3.050	0.845	4.320	4.682	1.277	1.563	0.938	1.757	2.816	3.585	4.988	3.250	1.623	3.664	1.524	1.640	0.901	3.631	nan	1.068	3.561
13222	chr7	56450231	56451930	+	0	NA	intron (NM_021879, intron 23 of 23)	L1Md_F|LINE|L1	211309	NM_021879	18431	Mm.137052	NM_021879	ENSMUSG00000030450	Oca2	D7H15S12|D7Icr28RN|D7Nic1|p|p<cas>	oculocutaneous albinism II	protein-coding	3.249	1.372	0.546	2.962	2.360	1.372	4.123	5.371	2.763	5.828	0.783	1.439	5.782	5.792	4.698	5.892	4.938	6.510	3.866	2.335	1.223	4.120	3.681	2.755	6.622
13406	chr7	91260168	91262146	+	0	NA	intron (NM_011807, intron 1 of 22)	intron (NM_011807, intron 1 of 22)	170371	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	2.522	1.386	1.118	3.325	1.924	0.808	2.388	3.777	2.566	2.509	0.892	0.791	3.481	3.847	3.832	3.472	2.770	4.693	0.759	0.453	0.685	nan	0.581	0.434	3.400
13481	chr7	106529275	106537610	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-92369	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	4.027	3.258	1.096	4.338	2.132	1.018	3.167	6.226	2.767	4.431	4.330	2.147	3.771	6.635	5.492	5.546	4.427	5.392	nan	2.651	2.706	6.776	1.674	1.447	9.197
12969	chr7	19944041	19949759	+	0	NA	intron (NM_027308, intron 1 of 4)	RMER17C|LTR|ERVK	3843	NM_027308	70080	Mm.98583	NM_027308	ENSMUSG00000040498	Igsf23	2210010C17Rik	immunoglobulin superfamily, member 23	protein-coding	5.125	3.319	1.281	5.636	3.472	1.617	6.177	7.791	3.584	5.162	7.267	2.666	5.929	7.111	6.317	7.277	5.371	5.723	2.622	1.735	1.304	3.712	1.624	1.542	10.199
14038	chr8	13270022	13274422	+	0	NA	intron (NM_001024504, intron 3 of 6)	L1_Mus1|LINE|L1	-15791	NM_172282	234076	Mm.219813	NM_172282	ENSMUSG00000038497	Tmco3	B230339H12Rik|C87304	transmembrane and coiled-coil domains 3	protein-coding	5.106	0.963	0.326	3.416	5.834	4.314	2.456	3.957	4.284	6.454	1.047	0.771	7.450	8.131	4.962	nan	6.609	5.094	0.628	0.801	0.669	0.960	0.380	0.510	7.746
13127	chr7	35173647	35175846	+	0	NA	Intergenic	B4|SINE|B4	-11639	NM_017394	53896	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	13.144	25.879	7.260	16.434	6.893	5.651	11.988	13.171	8.215	16.676	10.638	6.025	14.074	13.438	15.572	15.450	8.646	15.424	8.842	3.577	4.199	9.137	4.246	6.372	22.451
2120	chr11	45923925	45925366	+	0	NA	Intergenic	Intergenic	20290	NM_028185	72290	Mm.249827	NM_028185	ENSMUSG00000044847	Lsm11	2210404M20Rik|AV079530	U7 snRNP-specific Sm-like protein LSM11	protein-coding	2.879	1.486	1.507	2.312	3.216	2.629	0.852	2.034	2.817	2.647	0.360	0.643	1.563	3.836	2.151	2.861	1.846	3.077	nan	1.213	1.852	1.315	nan	0.421	2.640
8784	chr2	148355694	148357494	+	0	NA	Intergenic	Intergenic	-38783	NM_009219	20608	Mm.35324	NM_009219	ENSMUSG00000037014	Sstr4	Smstr4|sst4	somatostatin receptor 4	protein-coding	3.033	0.766	0.507	5.006	3.020	1.207	0.416	1.538	2.091	1.839	0.802	0.881	1.002	1.934	1.547	1.644	1.152	2.634	nan	0.538	0.381	0.850	0.582	0.282	1.275
8511	chr2	104335836	104338447	+	0	NA	intron (NM_001033347, intron 1 of 20)	intron (NM_001033347, intron 1 of 20)	73193	NM_001033347	241589	Mm.358909	NM_001033347	ENSMUSG00000068373	D430041D05Rik	9630056G07Rik|G2	RIKEN cDNA D430041D05 gene	protein-coding	5.402	0.934	0.606	2.508	1.451	0.805	2.784	4.349	2.223	2.116	1.479	1.040	3.575	4.231	4.021	4.093	4.671	4.265	2.176	0.895	0.997	nan	1.026	0.992	5.950
8129	chr2	32142131	32145234	+	0	NA	Intergenic	RCHARR1|DNA|hAT-Charlie	-7466	NM_172661	227723	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	9.610	6.710	3.630	6.255	5.857	3.609	7.712	9.229	nan	5.215	5.140	2.616	6.271	10.261	6.637	8.311	7.999	6.369	3.168	3.366	3.258	3.557	3.830	2.875	11.304
11264	chr5	64713745	64718919	+	0	NA	Intergenic	Intergenic	-87191	NM_008453	16599	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	3.062	2.698	0.940	3.032	1.971	1.001	2.452	4.824	2.792	2.696	1.197	2.413	1.828	2.926	2.815	3.049	1.587	2.086	2.054	1.667	1.249	nan	2.721	1.703	2.021
8335	chr2	70787468	70792223	+	0	NA	intron (NM_172664, intron 1 of 19)	Cheshire|DNA|hAT-Charlie	35635	NM_172664	228012	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0.443	9.129	6.438	0.478	0.117	0.080	0.533	0.520	0.453	0.411	0.238	0.207	0.288	0.320	0.445	0.695	0.726	0.719	0.869	0.794	0.746	0.475	0.685	0.587	0.640
11115	chr5	31753408	31755700	+	0	NA	intron (NM_144541, intron 3 of 11)	ORR1E-int|LTR|ERVL-MaLR	56504	NM_144541	107976	Mm.482126	NM_144541	ENSMUSG00000052139	Bre	6030405P19Rik|AI429776|B830038C02Rik	brain and reproductive organ-expressed protein	protein-coding	6.057	4.780	2.802	4.474	2.720	1.859	4.224	4.198	4.668	4.902	2.449	3.244	4.774	7.758	5.915	5.778	6.276	5.586	2.588	3.283	0.981	2.472	3.880	3.128	5.246
4636	chr14	47228745	47231287	+	0	NA	Intergenic	Intergenic	-40614	NM_008102	14528	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	6.223	0.548	0.885	2.532	3.309	2.406	5.448	3.434	2.693	3.569	1.798	0.732	5.638	5.829	5.287	5.554	3.335	4.464	0.605	1.216	1.205	0.578	0.717	0.375	6.329
6664	chr17	46105888	46112047	+	0	NA	Intergenic	Intergenic	-2037	NM_026768	68565	Mm.287443	NM_026768	ENSMUSG00000023967	Mrps18a	1110004O20Rik|C79712	mitochondrial ribosomal protein S18A	protein-coding	6.198	0.672	0.379	4.062	4.409	3.179	7.664	5.497	4.663	6.202	2.545	1.119	6.033	7.924	5.793	8.442	6.683	6.375	1.172	0.787	0.835	1.076	1.042	0.882	8.066
10057	chr4	46641771	46644352	+	0	NA	intron (NM_198664, intron 2 of 12)	intron (NM_198664, intron 2 of 12)	7138	NM_198664	381605	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	4.817	nan	0.255	1.460	1.994	1.052	2.864	5.041	2.711	3.113	2.038	1.564	2.887	3.846	4.178	5.170	2.586	4.197	1.136	0.739	0.642	nan	0.374	0.398	3.803
13041	chr7	27961670	27967539	+	0	NA	exon (NM_001081021, exon 6 of 6)	exon (NM_001081021, exon 6 of 6)	14553	NM_001081021	338354	Mm.389873	NM_001081021	ENSMUSG00000063047	Zfp780b	B230208L21Rik	zinc finger protein 780B	protein-coding	6.685	9.680	6.917	4.144	4.971	2.632	10.218	9.075	4.535	5.565	5.585	2.859	8.201	8.160	6.902	7.293	7.597	6.276	3.542	3.524	2.646	3.666	4.599	3.665	8.021
2147	chr11	49967263	49969405	+	0	NA	intron (NM_001347462, intron 7 of 13)	intron (NM_001347462, intron 7 of 13)	-56997	NM_021540	59044	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	5.355	1.481	1.280	3.596	3.986	1.753	2.015	4.389	3.626	4.716	2.296	1.263	3.089	6.235	3.342	4.522	2.068	4.255	nan	1.289	0.861	nan	nan	0.359	5.523
1581	chr10	88256047	88258297	+	0	NA	Intergenic	Lx7|LINE|L1	56075	NM_027487	67282	Mm.208465	NM_026070	ENSMUSG00000020056	Washc3	2900091E11Rik|5730495F03Rik|Ccdc53	WASH complex subunit 3	protein-coding	4.044	0.768	0.328	1.309	0.788	0.246	2.091	2.005	1.612	1.457	0.293	0.297	2.692	2.332	3.823	5.157	4.826	2.467	5.192	1.303	1.245	nan	5.136	4.239	3.717
12866	chr6	146912721	146917491	+	0	NA	intron (NM_026221, intron 1 of 26)	intron (NM_026221, intron 1 of 26)	26612	NM_026221	67533	Mm.103382	NM_026221	ENSMUSG00000016487	Ppfibp1	4632409B19Rik|AW214454|AW261454	PTPRF interacting protein, binding protein 1 (liprin beta 1)	protein-coding	nan	0.558	0.454	nan	0.963	0.336	3.856	3.132	1.712	nan	2.145	0.977	4.702	3.674	2.381	3.609	2.606	3.429	1.047	nan	0.424	nan	0.651	0.280	2.096
3997	chr13	38128329	38130006	+	0	NA	Intergenic	Intergenic	-22127	NM_023842	109620	Mm.355327	NM_023842	ENSMUSG00000054889	Dsp	2300002E22Rik|5730453H04Rik|AA407887|AA407888|AW109828|DP|rul	desmoplakin	protein-coding	8.328	12.599	5.641	8.201	3.465	2.370	5.610	5.368	5.028	nan	5.436	3.868	6.247	7.422	7.013	7.387	5.072	7.421	4.677	4.137	3.552	6.272	5.008	4.782	10.781
1507	chr10	80391437	80404720	+	0	NA	intron (NM_001306143, intron 1 of 6)	intron (NM_001306143, intron 1 of 6)	1453	NM_013595	17192	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	5.537	7.372	2.859	nan	2.661	1.468	5.055	5.243	3.495	4.831	4.654	2.648	4.256	6.477	nan	6.448	4.324	5.877	nan	3.713	2.819	8.259	4.458	3.808	8.421
1604	chr10	92815905	92829067	+	0	NA	intron (NM_001347060, intron 64 of 67)	HAL1|LINE|L1	-100068	NM_008682	17997	Mm.2998	NM_008682	ENSMUSG00000019988	Nedd1	-	neural precursor cell expressed, developmentally down-regulated gene 1	protein-coding	nan	10.318	5.421	1.074	0.600	0.333	0.415	0.806	1.148	1.113	1.575	1.051	0.399	nan	0.958	0.952	0.573	nan	0.592	0.736	0.439	nan	nan	0.220	0.872
15245	chr9	67619024	67625660	+	0	NA	Intergenic	Intergenic	-62639	NM_001081242	70549	Mm.33645	NM_027458	ENSMUSG00000052698	Tln2	5730421P04Rik|AI507121|AI787438|AL118320|mKIAA0320	talin 2	protein-coding	1.103	0.589	0.509	1.499	0.347	0.159	0.991	0.487	0.867	0.719	0.502	0.136	7.933	4.262	nan	1.285	1.059	0.499	4.307	3.574	2.537	5.064	2.311	1.713	4.302
13597	chr7	118034781	118038576	+	0	NA	Intergenic	Intergenic	79469	NM_170669	267019	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	4.634	0.813	0.223	4.683	1.669	1.026	5.000	8.973	3.185	2.649	1.280	2.263	5.427	3.309	3.565	4.343	3.816	5.432	0.798	1.056	0.258	0.761	0.772	0.434	2.363
6163	chr16	78372775	78376979	+	0	NA	intron (NM_001297747, intron 1 of 4)	intron (NM_001297747, intron 1 of 4)	1880	NR_002700	654432	Mm.458574	NR_002700	ENSMUSG00000044645	Gm7334	EG654432	B-cell translocation gene 3 pseudogene	pseudo	6.580	3.419	1.560	6.303	6.459	3.689	4.743	6.135	5.979	10.864	1.887	1.795	4.892	7.591	5.590	7.069	5.722	7.381	nan	1.392	1.171	1.975	1.459	1.690	9.570
7589	chr19	12084359	12088284	+	0	NA	intron (NR_030566, intron 2 of 3)	L1_Mus1|LINE|L1	5526	NM_146809	258805	Mm.223232	NM_146809	ENSMUSG00000044994	Olfr1426	MOR239-1	olfactory receptor 1426	protein-coding	5.942	8.701	4.272	5.856	4.223	2.678	4.772	6.759	3.969	4.665	3.653	3.206	4.450	7.783	6.529	5.579	5.971	4.321	1.353	1.792	1.150	2.770	1.736	1.271	5.506
4592	chr14	32842208	32844469	+	0	NA	Intergenic	Intergenic	9376	NM_001164485	105511	Mm.32231	NM_001164485	ENSMUSG00000078127	Fam170b	4922501K12Rik|AI449756	family with sequence similarity 170, member B	protein-coding	3.443	1.610	0.448	4.251	1.014	0.271	1.851	1.414	2.006	2.891	0.839	0.584	1.313	3.137	1.899	2.603	nan	2.009	0.988	0.649	0.412	2.023	0.428	0.210	4.150
4096	chr13	48520525	48534809	+	0	NA	Intergenic	L1ME1|LINE|L1	8447	NR_029656	387247		NR_029656	ENSMUSG00000065453	Mirlet7d	Mirnlet7d|let-7d|mmu-let-7d	microRNA let7d	ncRNA	nan	0.529	0.444	nan	0.185	0.087	0.256	0.350	0.231	0.229	0.334	0.231	0.058	0.171	0.234	0.453	0.246	nan	6.975	nan	3.382	7.657	5.796	4.194	nan
8272	chr2	59797775	59799786	+	0	NA	intron (NM_198294, intron 13 of 26)	intron (NM_198294, intron 13 of 26)	83826	NM_001159636	72137	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	1.073	8.334	8.291	0.915	0.536	0.341	0.492	nan	1.230	1.247	0.455	0.441	0.499	0.633	0.755	1.399	1.422	0.978	1.219	0.974	0.599	0.745	0.611	0.936	1.013
1140	chr10	19764377	19767108	+	0	NA	Intergenic	ORR1E|LTR|ERVL-MaLR	53155	NM_172786	237313	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	5.535	1.034	0.871	2.832	2.785	1.282	3.704	5.252	4.988	5.128	1.726	3.400	4.683	6.919	5.424	5.107	6.172	5.401	0.849	1.113	0.667	0.537	1.135	0.464	3.495
4736	chr14	61345895	61347765	+	0	NA	intron (NM_026598, intron 2 of 3)	B1_Mus1|SINE|Alu	13615	NM_026598	68177	Mm.22758	NM_026598	ENSMUSG00000021928	Ebpl	5730442K12Rik|EBRP	emopamil binding protein-like	protein-coding	3.246	2.606	0.855	1.906	1.134	0.132	0.929	6.077	1.608	1.350	2.258	1.724	1.976	3.516	2.233	3.343	1.909	2.729	1.053	0.577	0.785	1.328	0.423	0.151	2.298
15118	chr9	57368227	57371517	+	0	NA	Intergenic	MMERVK10D3_I-int|LTR|ERVK	-21198	NR_040729	73772	Mm.444684	NR_040729		4930430J02Rik	-	RIKEN cDNA 4930430J02 gene	ncRNA	7.421	7.443	2.815	7.008	3.898	3.144	5.285	6.277	5.862	9.242	4.866	2.926	5.298	8.179	6.556	8.456	5.176	7.463	4.975	2.549	3.025	5.018	3.234	3.222	10.771
3417	chr12	72982394	72984297	+	0	NA	Intergenic	Intergenic	43463	NM_011384	20476	Mm.57138	NM_011384	ENSMUSG00000021099	Six6	Optx2|Six9	sine oculis-related homeobox 6	protein-coding	2.386	2.014	1.154	2.259	1.679	0.423	0.866	1.107	3.214	3.981	1.461	1.060	1.707	2.671	1.847	3.408	1.850	3.285	0.724	0.857	0.498	1.250	0.886	0.254	3.830
4922	chr14	102071829	102074229	+	0	NA	Intergenic	Intergenic	232406	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.450	13.308	8.148	0.415	0.276	0.116	0.251	0.809	0.575	0.673	0.590	0.113	0.162	0.301	0.423	0.589	0.645	0.459	0.812	0.881	0.406	0.664	1.046	0.405	nan
275	chr1	71506344	71508626	+	0	NA	Intergenic	Intergenic	-49671	NM_026195	108147	Mm.38010	NM_026195	ENSMUSG00000026192	Atic	2610509C24Rik|AA536954|AW212393	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	protein-coding	1.082	0.721	0.395	0.524	0.191	0.220	1.035	1.404	0.504	0.409	5.966	2.139	1.003	nan	0.698	nan	nan	nan	0.814	0.800	0.269	1.309	0.231	0.317	0.708
14579	chr8	109478617	109483144	+	0	NA	Intergenic	Intergenic	-13147	NM_019938	56523	Mm.42166	NM_019938	ENSMUSG00000031727	Pmfbp1	1700016D22Rik|F77|Stap	polyamine modulated factor 1 binding protein 1	protein-coding	1.577	1.126	1.251	2.034	3.568	4.745	1.030	1.356	1.589	1.568	0.976	1.509	1.251	1.731	1.401	1.102	1.498	1.829	1.066	1.064	2.107	nan	0.959	1.043	0.976
13674	chr7	123654184	123660492	+	0	NA	Intergenic	Lx7|LINE|L1	-156889	NM_001081329	210162	Mm.135397	NM_175435	ENSMUSG00000030757	Zkscan2	9430065N20Rik|AW493225|Zfp694	zinc finger with KRAB and SCAN domains 2	protein-coding	4.808	0.623	0.395	3.569	3.161	1.844	5.511	7.629	3.170	3.643	0.996	0.746	6.747	6.061	6.466	6.673	5.874	5.933	2.227	1.022	1.030	1.818	1.412	1.264	5.525
9630	chr3	103661056	103667640	+	0	NA	Intergenic	Intergenic	-18280	NM_174875	666468	Mm.102230	NM_174875	ENSMUSG00000079418	Atg4a	AI627006|AV169859|Apg4a|Atg4al|Autl2	autophagy related 4A, cysteine peptidase	protein-coding	3.898	8.857	3.513	2.985	2.502	1.526	2.031	1.808	2.688	2.724	3.611	1.510	2.894	4.402	nan	2.737	2.988	3.171	1.089	1.789	1.541	0.942	0.764	0.551	2.813
8755	chr2	146121863	146122932	+	0	NA	Intergenic	ORR1F|LTR|ERVL-MaLR	-99600	NM_016889	53626	Mm.379070	NM_016889	ENSMUSG00000068154	Insm1	IA-1	insulinoma-associated 1	protein-coding	2.056	1.218	1.980	0.847	1.409	0.787	3.216	3.606	1.045	1.133	0.799	1.156	2.123	1.585	1.787	1.467	1.645	1.096	nan	7.705	4.453	3.762	6.967	4.028	1.368
13333	chr7	82784757	82788887	+	0	NA	Intergenic	Intergenic	-31178	NR_046004	77800	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	5.872	2.631	1.258	4.710	4.677	3.049	2.377	2.809	4.834	3.720	3.671	3.058	3.045	4.207	3.016	nan	2.778	4.731	1.234	1.601	1.028	1.041	1.426	0.696	nan
10133	chr4	59461828	59465953	+	0	NA	Intergenic	Intergenic	-25257	NM_001163288	634731	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528|OTTMUSG00000007332	sushi domain containing 1	protein-coding	4.539	2.005	0.823	2.621	3.999	2.817	3.944	2.284	2.699	2.413	5.122	1.837	2.817	2.989	3.431	4.556	3.041	4.980	nan	1.309	0.920	2.732	1.936	1.108	5.010
3626	chr12	99978809	99981231	+	0	NA	intron (NM_146037, intron 2 of 2)	MTB|LTR|ERVL-MaLR	15521	NM_001164427	217826	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	3.710	0.599	0.597	2.045	3.248	2.062	3.178	1.953	3.337	2.101	2.546	1.603	4.765	4.377	3.828	4.288	4.169	nan	0.925	0.538	0.644	0.538	0.566	0.697	3.291
3314	chr12	47916939	47920852	+	0	NA	Intergenic	Lx3B|LINE|L1	382567	NR_039586	100628593		NR_039586	ENSMUSG00000092981	Mir5125	mmu-mir-5125|mu-mir-5125	microRNA 5125	ncRNA	nan	3.408	2.103	1.766	1.105	0.716	0.617	0.503	0.642	1.341	0.431	0.368	0.176	0.593	0.640	0.939	0.638	0.979	5.553	5.576	5.335	6.006	5.502	6.598	1.041
2208	chr11	54245374	54246370	+	0	NA	Intergenic	Intergenic	4027	NM_009969	12981	Mm.4922	NM_009969	ENSMUSG00000018916	Csf2	Csfgm|GMCSF|Gm-CSf|MGI-IGM	colony stimulating factor 2 (granulocyte-macrophage)	protein-coding	3.126	0.704	1.242	2.755	4.629	3.995	2.133	1.785	2.433	2.776	0.571	0.448	3.410	5.548	1.372	2.886	2.625	3.345	nan	1.726	1.105	0.517	1.546	1.685	nan
4459	chr14	8930412	8933055	+	0	NA	Intergenic	Intergenic	265343	NR_045968	74859	Mm.84041	NR_045968	ENSMUSG00000097898	4930455B14Rik	1700027C12Rik	RIKEN cDNA 4930455B14 gene	ncRNA	3.917	6.814	3.123	4.674	5.321	2.794	2.693	8.408	3.816	6.359	3.715	2.341	3.590	6.691	4.669	4.685	2.305	4.862	2.915	2.738	1.926	3.665	3.283	3.033	5.680
1731	chr10	111219493	111220683	+	0	NA	intron (NM_001003717, intron 2 of 22)	intron (NM_001003717, intron 2 of 22)	55286	NM_175489	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	1.118	0.881	0.153	1.247	2.974	1.679	1.061	3.511	nan	1.343	1.010	3.357	2.295	3.935	1.270	1.450	0.935	1.149	0.627	0.682	0.890	0.361	1.476	0.606	3.341
12470	chr6	91983969	91986494	+	0	NA	intron (NM_172731, intron 1 of 20)	intron (NM_172731, intron 1 of 20)	6266	NM_172731	232237	Mm.295740	NM_172731	ENSMUSG00000034037	Fgd5	C330025N11Rik|ZFYVE23|mFLJ00274	FYVE, RhoGEF and PH domain containing 5	protein-coding	2.234	1.626	1.018	nan	1.390	1.101	0.972	0.755	1.635	2.086	0.708	1.053	0.692	1.435	1.364	2.257	0.748	nan	nan	0.946	1.075	1.520	0.512	0.402	2.176
7158	chr18	36581611	36583866	+	0	NA	intron (NM_175375, intron 4 of 33)	intron (NM_175375, intron 4 of 33)	22135	NM_175375	108857	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	4.887	1.600	1.474	3.085	2.928	2.623	4.585	4.358	4.083	4.001	1.092	1.664	6.035	6.001	5.852	4.832	3.257	5.436	1.331	0.968	0.687	0.913	0.853	0.748	5.241
5820	chr16	15358661	15360671	+	0	NA	Intergenic	Intergenic	234852	NM_001159351	70620	Mm.235407	NM_023585	ENSMUSG00000022674	Ube2v2	1110021H13Rik|4632410D19Rik|5730524P06Rik|6820402M05|AI848315|C81524|MMS2	ubiquitin-conjugating enzyme E2 variant 2	protein-coding	3.057	0.390	0.259	1.622	1.515	0.416	3.233	4.814	3.432	2.536	3.326	1.956	6.057	4.696	3.691	6.781	3.260	5.227	0.625	0.421	0.244	0.541	0.395	0.189	2.400
12616	chr6	115369805	115376061	+	0	NA	intron (NM_001308354, intron 1 of 7)	B1_Mus2|SINE|Alu	10584	NM_001308354	19016	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	3.952	0.523	0.398	1.850	1.267	0.663	4.132	5.850	2.766	2.925	0.697	1.182	5.009	6.013	5.210	5.587	6.525	3.471	0.805	0.515	0.103	0.431	nan	0.321	2.263
10032	chr4	44717868	44726018	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	-11503	NM_008782	18507	Mm.439659	NM_008782	ENSMUSG00000014030	Pax5	BSAP|EBB-1|KLP|Pax-5	paired box 5	protein-coding	0.400	10.167	5.463	0.757	0.187	0.119	0.283	0.261	0.347	0.777	0.239	0.172	0.088	0.223	0.332	0.486	0.470	nan	0.661	0.838	0.730	nan	0.417	0.245	0.551
1500	chr10	80121811	80123642	+	0	NA	intron (NR_126043, intron 1 of 10)	RMER4A|LTR|ERVK	6923	NM_001301854	20869	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	3.218	6.302	5.588	4.047	5.142	5.791	2.625	5.051	3.356	2.971	2.866	2.459	3.603	3.683	3.650	3.025	4.027	3.250	nan	2.595	4.847	2.153	3.179	4.639	3.242
4275	chr13	85569560	85571410	+	0	NA	Intergenic	RLTR6-int|LTR|ERV1	-280999	NM_145452	218397	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	1.817	3.054	1.976	1.727	0.717	0.472	3.969	4.390	1.684	1.399	5.363	2.287	1.382	3.298	2.462	0.920	0.828	2.068	1.082	0.826	0.803	0.575	0.407	0.346	0.647
4812	chr14	70210086	70216737	+	0	NA	Intergenic	Intergenic	-5740	NM_011366	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	5.300	1.853	0.760	2.150	2.325	1.028	7.139	9.181	3.959	4.288	6.272	3.282	6.126	7.185	6.096	9.732	4.172	5.523	0.742	nan	0.221	1.176	0.542	0.231	7.269
14746	chr8	125623398	125627496	+	0	NA	Intergenic	RMER19C|LTR|ERVK	40809	NR_015535	75930	Mm.195663	NR_015535	ENSMUSG00000110629	4930567H12Rik	4930579P07Rik	RIKEN cDNA 4930567H12 gene	ncRNA	7.242	7.102	2.318	5.203	5.075	4.936	6.399	7.822	4.663	6.796	7.765	4.959	6.422	6.903	7.419	8.803	8.194	7.220	nan	1.962	2.874	nan	1.776	nan	10.331
15520	chr9	110268453	110269930	+	0	NA	Intergenic	Intergenic	-12096	NR_105744	102465959		NR_105744	ENSMUSG00000098973	Mir6236	Gm27547|mmu-mir-6236	microRNA 6236	ncRNA	2.849	1.143	0.353	1.843	1.988	1.751	1.811	1.028	nan	nan	0.483	0.539	1.712	3.172	1.501	2.253	1.003	nan	1.150	1.205	1.090	1.491	0.758	0.847	3.580
4103	chr13	48965305	48966746	+	0	NA	intron (NM_001033268, intron 1 of 17)	intron (NM_001033268, intron 1 of 17)	1803	NM_001033268	218236	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	9.663	16.867	3.066	20.390	7.146	8.060	10.538	8.363	8.150	42.122	12.418	4.918	9.937	13.178	12.766	14.557	4.149	17.512	6.067	nan	4.641	8.390	3.382	8.875	29.145
4175	chr13	56698402	56706605	+	0	NA	promoter-TSS (NM_008541)	promoter-TSS (NM_008541)	-507	NM_008541	17129	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	3.426	1.484	0.714	3.137	1.753	0.939	2.303	1.249	5.031	6.671	5.036	1.813	3.538	5.157	3.584	4.441	1.494	4.379	0.807	0.518	0.448	1.001	0.336	0.280	nan
5693	chr15	101113525	101115427	+	0	NA	Intergenic	Intergenic	-1279	NM_144790	208258	Mm.152952	NM_144790	ENSMUSG00000047034	Ankrd33	A930021G21Rik|Panky|Panky-a	ankyrin repeat domain 33	protein-coding	10.820	12.593	2.869	9.370	3.925	2.010	9.354	11.867	7.006	9.769	7.016	3.136	9.747	9.877	11.707	12.161	7.490	9.824	4.886	3.600	1.771	5.971	3.693	2.164	12.657
8213	chr2	38366798	38373013	+	0	NA	TTS (NM_010710)	TTS (NM_010710)	18597	NM_010710	16870	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	12.169	4.676	1.555	8.632	5.263	2.335	10.505	10.348	7.437	10.780	4.269	4.407	12.533	11.097	10.702	15.520	9.668	12.035	2.511	1.367	1.424	1.796	1.255	1.293	17.863
4073	chr13	46513884	46516929	+	0	NA	intron (NM_026056, intron 1 of 12)	ORR1F|LTR|ERVL-MaLR	13503	NM_026056	67252	Mm.44529	NM_026056	ENSMUSG00000021373	Cap2	2810452G09Rik|AV045235	CAP, adenylate cyclase-associated protein, 2 (yeast)	protein-coding	nan	0.763	0.573	nan	0.472	0.201	0.355	0.388	1.853	5.337	0.276	0.712	0.199	0.283	0.399	0.528	0.422	nan	8.405	nan	4.271	5.816	5.459	4.807	nan
14055	chr8	14607176	14608750	+	0	NA	intron (NM_172910, intron 4 of 15)	intron (NM_172910, intron 4 of 15)	-280573	NM_012000	26889	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.474	1.402	0.978	0.390	0.430		2.629	4.217	1.583	2.080	3.574	1.019	5.088	3.653	0.677	2.513	0.536	2.097	1.061	0.600	0.348	0.939	0.908	0.266	0.759
3410	chr12	72074403	72079461	+	0	NA	intron (NM_026038, intron 4 of 4)	Charlie1b|DNA|hAT-Charlie	-5941	NM_181752	238252	Mm.390508	NM_181752	ENSMUSG00000043398	Gpr135	PAFR	G protein-coupled receptor 135	protein-coding	6.790	5.877	3.482	5.330	5.240	5.262	5.293	4.239	3.543	5.729	3.680	2.088	5.813	6.315	5.873	nan	5.188	5.024	2.948	2.099	2.899	3.194	2.809	3.566	8.818
11121	chr5	31911553	31914738	+	0	NA	intron (NM_144541, intron 7 of 11)	MLT1A|LTR|ERVL-MaLR	215095	NM_144541	107976	Mm.482126	NM_144541	ENSMUSG00000052139	Bre	6030405P19Rik|AI429776|B830038C02Rik	brain and reproductive organ-expressed protein	protein-coding	7.262	1.520	0.844	4.378	7.101	4.767	8.957	6.642	5.486	5.674	5.561	3.067	6.038	10.970	6.996	7.505	5.887	7.280	0.754	1.042	0.857	0.659	0.491	0.746	5.462
1295	chr10	56239304	56241086	+	0	NA	Intergenic	MER20B|DNA|hAT-Charlie	-11506	NM_001033385	544696	Mm.411188	NM_001033385	ENSMUSG00000038122	Tbc1d32	Bromi|D630037F22Rik|b2b2284Clo	TBC1 domain family, member 32	protein-coding	5.355	0.628	0.429	1.033	3.228	1.844	2.264	2.648	3.504	4.857	0.818	0.854	2.942	3.823	2.176	3.491	3.420	2.698	nan	0.231	0.619	0.163	0.192	0.193	3.105
8679	chr2	131822254	131852043	+	0	NA	intron (NR_029381, intron 1 of 2)	intron (NR_029381, intron 1 of 2)	10508	NR_029381	414081	Mm.246905	NR_029381	ENSMUSG00000086822	5330413P13Rik	-	RIKEN cDNA 5330413P13 gene	ncRNA	5.312	8.974	3.634	5.327	5.139	2.786	2.550	1.864	5.844	8.551	3.448	1.113	4.519	7.106	4.052	nan	3.260	6.542	nan	1.029	0.890	0.769	0.638	0.425	5.633
2832	chr11	102355620	102358581	+	0	NA	exon (NM_011403, exon 10 of 20)	exon (NM_011403, exon 10 of 20)	8181	NM_011403	20533	Mm.7248	NM_011403	ENSMUSG00000006574	Slc4a1	Ae1|CD233|Empb3|l11Jus51	solute carrier family 4 (anion exchanger), member 1	protein-coding	6.144	3.149	2.006	3.569	4.313	2.643	4.397	4.356	3.577	4.465	1.594	1.123	6.041	6.152	3.701	5.575	4.671	4.701	0.903	nan	0.704	0.782	nan	nan	3.053
5403	chr15	78402611	78404391	+	0	NA	intron (NM_009437, intron 1 of 1)	intron (NM_009437, intron 1 of 1)	2358	NM_009437	22117	Mm.15312	NM_009437	ENSMUSG00000044986	Tst	Rhodanese	thiosulfate sulfurtransferase, mitochondrial	protein-coding	8.156	13.849	3.195	nan	1.956	0.678	2.991	9.054	2.651	2.351	3.017	1.457	6.089	3.842	3.322	3.156	3.588	3.885	1.231	1.707	2.294	nan	0.977	1.033	10.902
3281	chr12	35967823	35969701	+	0	NA	Intergenic	L1_Mur2|LINE|L1	-24163	NM_011783	23795	Mm.7244	NM_011783	ENSMUSG00000020581	Agr2	Agr2h|Gob-4|HAG-2|XAG-2|mAG-2	anterior gradient 2	protein-coding	6.773	nan	0.488	4.110	1.610	0.634	1.365	3.023	3.402	3.277	2.440	1.390	3.439	3.610	3.177	2.710	1.726	7.998	nan	0.220	0.331	0.646	0.271	0.166	2.058
14957	chr9	34901311	34911503	+	0	NA	intron (NM_001190914, intron 2 of 16)	intron (NM_001190914, intron 2 of 16)	-210321	NR_029475	78934	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	4.565	0.946	0.661	2.873	2.164	1.216	3.675	4.571	3.546	3.173	3.786	2.294	4.270	4.068	5.016	5.265	nan	4.494	nan	1.144	0.656	0.862	0.979	0.669	5.033
8702	chr2	135384767	135389567	+	0	NA	exon (NM_001145830, exon 30 of 32)	exon (NM_001145830, exon 30 of 32)	-18663	NR_039540	100628568		NR_039540	ENSMUSG00000092830	Mir3963	mmu-mir-3963|mu-mir-3963	microRNA 3963	ncRNA	3.520	0.804	0.401	4.925	1.876	1.079	1.035	2.257	2.264	2.098	1.518	0.642	1.337	1.974	1.803	2.121	1.659	3.330	1.209	1.313	0.868	1.069	1.252	0.891	1.795
6018	chr16	33378887	33383089	+	0	NA	promoter-TSS (NR_045709)	promoter-TSS (NR_045709)	213	NM_011749	22661	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	9.540	8.039	2.938	6.403	6.599	4.733	8.965	8.246	4.804	8.574	6.117	3.812	5.980	8.801	6.741	8.837	6.379	7.600	5.519	3.413	3.410	5.129	6.340	6.229	10.431
10964	chr4	151612899	151616019	+	0	NA	intron (NM_001081557, intron 3 of 23)	ORR1E-int|LTR|ERVL-MaLR	247309	NM_001081557	100072	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	2.396	nan	0.548	1.362	0.731	0.523	0.834	1.687	1.520	1.850	0.322	0.567	2.257	3.144	2.031	2.355	1.997	1.758	1.014	0.644	0.756	1.511	0.251	0.491	7.859
15870	chrX	163472443	163475377	+	0	NA	Intergenic	MLT2F|LTR|ERVL	75826	NM_008177	14829	Mm.4687	NM_008177	ENSMUSG00000031364	Grpr	GRP-R	gastrin releasing peptide receptor	protein-coding	2.516	1.108	0.678	1.888	2.057	1.251	2.178	5.447	3.136	2.836	1.517	1.341	2.892	2.415	2.332	3.185	2.894	3.333	0.899	0.767	0.376	0.387	0.447	0.415	1.417
4055	chr13	44824698	44830132	+	0	NA	intron (NM_001205044, intron 3 of 18)	intron (NM_001205044, intron 3 of 18)	96144	NM_001205043	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	9.364	7.848	2.754	7.850	6.551	4.872	8.863	8.650	6.355	12.374	7.005	4.890	7.690	12.205	7.998	9.075	7.179	8.327	5.387	nan	4.770	5.621	5.096	6.141	12.284
3271	chr12	33832033	33833891	+	0	NA	Intergenic	Intergenic	-95463	NM_033522	114712	Mm.204643	NM_033522	ENSMUSG00000046518	Ferd3l	Mnato3|N-twist|Nato|Nato3|Ntwist|Ptfb|bHLHa31|fer3	Fer3-like (Drosophila)	protein-coding	13.629	11.491	3.662	10.429	6.906	2.461	7.812	7.455	nan	10.497	5.953	4.618	8.028	10.879	9.379	10.900	9.782	10.122	nan	3.663	2.094	4.271	3.212	3.183	16.800
13146	chr7	50701989	50705364	+	0	NA	intron (NM_001037906, intron 15 of 19)	Lx8|LINE|L1	104486	NM_172901	243996	Mm.443270	NM_172901	ENSMUSG00000084234	4933405O20Rik	-	RIKEN cDNA 4933405O20 gene	protein-coding	3.820	1.360	0.572	3.353	2.818	1.500	2.783	6.231	2.986	3.959	1.764	1.052	6.880	7.554	5.078	6.378	5.636	5.548	0.537	0.804	0.669	0.397	0.679	0.346	6.624
7408	chr18	76284246	76289114	+	0	NA	intron (NM_001311070, intron 1 of 8)	intron (NM_001311070, intron 1 of 8)	24235	NM_001311070	17126	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	0.737	nan	0.404	1.022	0.396	0.193	0.833	1.614	1.261	nan	2.899	1.927	1.099	1.293	1.797	1.649	0.798	1.171	4.455	nan	0.887	4.448	2.456	1.700	1.362
13655	chr7	121418511	121420557	+	0	NA	intron (NM_001081327, intron 1 of 1)	intron (NM_001081327, intron 1 of 1)	27238	NM_001081327	195646	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	6.960	6.843	3.353	6.574	4.136	3.267	4.224	8.342	4.653	5.566	4.874	3.342	6.290	6.785	5.522	6.225	4.636	5.675	5.448	3.520	3.652	4.477	4.324	4.272	7.781
11670	chr5	122680661	122684636	+	0	NA	3' UTR (NM_011027, exon 13 of 13)	3' UTR (NM_011027, exon 13 of 13)	-24896	NM_001310720	18438	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	2.662	15.284	8.342	2.369	1.766	1.298	1.053	1.129	1.895	2.144	1.089	0.813	0.917	1.340	1.767	1.865	1.602	1.586	nan	nan	2.559	0.967	nan	0.681	2.152
12004	chr5	151871929	151874682	+	0	NA	Intergenic	Intergenic	-222097	NM_027009	69263	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	4.265	1.049	0.589	4.644	3.061	0.890	3.073	1.732	4.814	4.855	1.763	0.968	3.862	5.858	4.680	5.690	2.975	6.358	1.969	1.065	0.841	2.216	0.824	0.401	5.733
6219	chr16	92649782	92659459	+	0	NA	intron (NM_001111023, intron 3 of 5)	MIRc|SINE|MIR	42709	NM_001111023	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	4.935	nan	0.728	2.616	3.887	2.327	5.538	4.563	3.653	3.800	4.492	2.533	7.357	6.622	4.454	6.166	3.633	nan	1.217	1.118	1.174	nan	0.943	0.889	4.947
13566	chr7	117067399	117069890	+	0	NA	Intergenic	L1_Mus1|LINE|L1	-312335	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	4.796	0.626	0.742	1.693	1.677	0.793	6.531	4.373	1.754	2.477	1.505	1.284	3.468	4.206	3.816	4.060	3.698	3.572	2.064	1.693	1.171	1.777	0.908	0.806	6.634
12345	chr6	82810553	82815206	+	0	NA	Intergenic	Intergenic	-38425	NM_013820	15277	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	4.698	0.951	0.415	2.730	3.550	1.738	5.237	7.376	3.252	4.284	5.306	2.489	5.060	8.479	5.209	7.650	7.067	3.420	1.501	1.096	0.763	0.993	1.578	0.897	4.414
12674	chr6	120993371	120996234	+	0	NA	non-coding (NR_138099, exon 3 of 3)	non-coding (NR_138099, exon 3 of 3)	35958	NR_138099	215458	Mm.122399	NR_138099		LOC215458	-	uncharacterized LOC215458	ncRNA	2.249	1.002	0.319	1.684	0.885	0.549	0.733	0.675	1.490	1.296	7.580	2.601	0.344	nan	1.174	1.469	1.051	1.394	5.293	1.877	1.591	5.378	nan	2.854	1.587
8236	chr2	49413067	49414696	+	0	NA	Intergenic	ORR1A1|LTR|ERVL-MaLR	-37605	NM_172663	227867	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2 (Drosophila)	protein-coding	5.756	1.046	0.605	2.203	1.283	0.774	4.968	6.045	5.226	5.152	1.691	0.952	9.700	6.174	4.954	8.890	6.708	5.903	1.364	0.794	0.301	0.780	0.915	0.550	5.873
4807	chr14	68558506	68560899	+	0	NA	Intergenic	B3|SINE|B2	22370	NM_021475	58860	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	5.213	0.691	0.494	1.662	3.469	2.489	6.980	4.703	3.349	3.487	0.927	1.632	4.916	4.256	3.581	3.702	4.061	3.850	0.830	nan	0.666	0.338	1.070	0.604	3.856
10113	chr4	57178767	57182939	+	0	NA	Intergenic	ID_B1|SINE|B4	8782	NR_040669	329851	Mm.392470	NR_040669	ENSMUSG00000085967	Gm12530	D730003B17|OTTMUSG00000007337	predicted gene 12530	ncRNA	4.777	nan	0.375	3.669	4.946	3.832	4.940	3.801	3.549	5.013	3.245	2.535	6.387	7.197	4.163	5.385	4.502	5.210	nan	1.266	0.959	1.130	1.076	1.250	4.716
2938	chr11	109277346	109281304	+	0	NA	intron (NM_001165934, intron 2 of 16)	intron (NM_001165934, intron 2 of 16)	18856	NM_001165934	19739	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	5.245	15.380	9.216	4.987	5.735	3.137	3.473	3.187	nan	6.661	0.929	1.637	5.116	7.399	5.233	6.269	3.112	5.012	2.681	1.724	1.289	nan	1.445	1.036	3.836
3915	chr13	29872214	29873252	+	0	NA	Intergenic	Intergenic	-17060	NM_144536	68916	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding	2.626	0.695	0.355	2.944	2.016	1.529	3.141	3.334	3.975	3.181	4.368	3.895	3.882	3.304	3.460	4.412	3.028	4.441	2.310	1.656	1.356	4.539	1.533	0.904	3.461
5126	chr15	37168890	37176928	+	0	NA	Intergenic	B2_Mm1a|SINE|B2	-60127	NM_026496	252973	Mm.244612	NM_026496	ENSMUSG00000022286	Grhl2	0610015A08Rik|BOM|Tcfcp2l3|clft3	grainyhead-like 2 (Drosophila)	protein-coding	4.623	0.581	0.537	2.625	3.137	2.196	8.403	9.837	3.278	3.474	4.377	3.163	7.662	4.943	5.586	5.205	7.456	4.534	2.822	1.775	1.505	nan	2.601	1.909	nan
4516	chr14	21756686	21758977	+	0	NA	intron (NM_026283, intron 1 of 5)	B1_Mus2|SINE|Alu	7300	NM_026283	67630	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	2.815	0.696	0.481	3.183	4.441	3.083	3.343	3.613	nan	3.607	2.559	2.173	4.756	5.207	3.734	3.257	1.947	4.406	1.515	1.088	1.688	nan	1.281	0.987	2.123
10462	chr4	120232769	120245155	+	0	NA	Intergenic	MTA_Mm|LTR|ERVL-MaLR	48299	NM_194060	329934	Mm.277090	NM_194060	ENSMUSG00000052135	Foxo6	-	forkhead box O6	protein-coding	6.649	3.148	1.210	5.126	4.944	3.133	4.854	4.674	5.536	6.148	2.843	1.767	6.281	8.300	5.347	6.246	4.458	6.684	2.847	2.084	1.603	3.431	1.943	1.604	7.203
10892	chr4	148435595	148445023	+	0	NA	intron (NM_027873, intron 1 of 1)	intron (NM_027873, intron 1 of 1)	4442	NM_027873	71707	Mm.292503	NM_027873	ENSMUSG00000047719	Ubiad1	1200002M06Rik|AI426463|AW320947|Tere1	UbiA prenyltransferase domain containing 1	protein-coding	1.129	nan	0.301	1.770	0.647	0.442	0.730	0.726	1.085	0.782	0.649	0.588	0.743	1.099	1.178	1.119	1.104	1.454	6.363	1.721	1.200	7.661	4.610	3.630	2.047
4136	chr13	52434059	52437205	+	0	NA	Intergenic	Intergenic	95204	NM_001024474	68203	Mm.29362	NM_001024474	ENSMUSG00000047842	Diras2	2900052J15Rik|AI414999	DIRAS family, GTP-binding RAS-like 2	protein-coding	nan	0.472	0.678	nan	0.355	0.118	0.341	0.605	1.143	0.728	0.724	1.573	0.330	0.603	0.281	0.498	0.316	nan	2.634	nan	2.621	5.224	3.739	2.659	nan
14271	chr8	70604215	70608726	+	0	NA	intron (NM_133772, intron 1 of 16)	intron (NM_133772, intron 1 of 16)	1844	NM_133772	76900	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	5.590	0.777	0.494	2.964	2.195	1.388	4.680	6.732	3.933	3.759	3.843	3.118	8.314	4.296	6.763	8.672	6.401	5.527	nan	0.945	0.480	2.297	1.628	1.125	5.006
5151	chr15	38795415	38798143	+	0	NA	Intergenic	Intergenic	-68263	NR_131206	105463124	Mm.432448	NR_131206		Borg	-	BMP/OP-responsive gene	ncRNA	3.746	0.449	0.475	1.482	0.489	0.181	3.918	4.380	2.062	2.142	1.079	0.531	5.634	4.776	3.284	4.160	2.913	3.565	0.725	0.392	0.359	nan	0.468	0.203	2.390
10277	chr4	94758934	94762325	+	0	NA	intron (NM_001290549, intron 1 of 22)	intron (NM_001290549, intron 1 of 22)	21340	NM_001290551	21687	Mm.14313	NM_013690	ENSMUSG00000006386	Tek	AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2	endothelial-specific receptor tyrosine kinase	protein-coding	4.045	nan	0.419	4.874	3.442	1.549	2.246	3.867	nan	4.103	3.093	2.099	2.768	4.703	nan	4.639	1.767	3.969	1.286	0.588	0.407	nan	1.001	0.363	5.636
3801	chr12	118910593	118914049	+	0	NA	intron (NM_029961, intron 15 of 27)	intron (NM_029961, intron 15 of 27)	54100	NM_029961	77706	Mm.261496	NM_029961	ENSMUSG00000072791	Abcb5	9230106F14Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding	5.479	1.156	0.818	2.573	2.918	2.095	4.706	3.626	2.075	2.897	2.042	0.796	3.407	3.217	3.153	4.061	4.313	3.754	0.657	0.757	0.376	0.463	0.599	0.418	3.065
6692	chr17	47584864	47589376	+	0	NA	intron (NM_001081635, intron 2 of 6)	ID_B1|SINE|B4	-6347	NM_007632	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	3.622	1.245	0.732	3.089	2.567	1.250	6.749	6.686	2.375	2.286	5.018	3.762	4.244	5.882	5.202	4.637	3.999	4.286	1.561	0.728	0.643	1.350	0.791	0.671	6.244
10552	chr4	128660119	128661716	+	0	NA	intron (NM_001195130, intron 1 of 14)	intron (NM_001195130, intron 1 of 14)	6215	NM_001195130	54383	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic-like 2 (Drosophila)	protein-coding	3.813	2.507	1.387	2.869	3.489	3.260	2.115	1.913	2.522	2.642	1.115	1.385	2.798	4.131	nan	3.283	1.657	2.913	0.919	0.965	1.471	1.154	1.110	0.970	3.167
13429	chr7	96956983	96958638	+	0	NA	intron (NM_153591, intron 2 of 13)	intron (NM_153591, intron 2 of 13)	6283	NM_153591	244141	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	3.462	0.761	0.499	3.181	2.378	1.498	3.573	2.584	5.502	4.041	3.472	2.177	3.838	3.926	5.036	3.831	3.344	5.378	nan	0.570	0.666	0.804	1.024	1.001	3.406
251	chr1	64350836	64352876	+	0	NA	Intergenic	ORR1D2|LTR|ERVL-MaLR	-180948	NM_133828	12912	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	10.116	3.151	1.620	5.655	5.308	2.668	6.307	4.760	4.951	6.424	8.066	4.597	6.915	7.980	5.068	nan	3.206	nan	2.340	1.844	1.330	3.410	1.778	2.225	5.806
1594	chr10	92531941	92533357	+	0	NA	Intergenic	Intergenic	-157276	NR_046027	627800	Mm.391417	NR_046027	ENSMUSG00000098040	Gm20757	-	predicted gene, 20757	ncRNA	5.624	4.408	2.409	4.412	1.690	0.335	1.758	4.930	4.042	3.545	5.423	3.146	2.892	3.321	3.927	3.289	1.859	6.859	1.728	1.624	0.517	3.036	nan	0.414	3.043
15177	chr9	63120164	63121771	+	0	NA	Intergenic	Intergenic	26013	NM_172446	207667	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	2.915	0.799	0.605	0.695	0.159	0.352	4.003	5.627	1.660	1.882	2.162	1.938	5.646	4.407	2.425	1.769	1.831	2.917	nan	0.461	0.271	0.796	1.471	1.209	2.471
10648	chr4	133157354	133163840	+	0	NA	intron (NM_153423, intron 1 of 8)	B3|SINE|B2	29964	NM_153423	242687	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	2.994	1.163	0.483	4.091	2.710	1.294	3.369	4.938	nan	3.460	8.291	2.636	3.496	5.590	4.986	6.597	2.583	4.690	0.855	0.318	0.638	1.052	nan	0.334	7.767
10492	chr4	123237923	123243598	+	0	NA	intron (NM_013905, intron 2 of 4)	intron (NM_013905, intron 2 of 4)	7204	NM_013905	56198	Mm.103615	NM_013905	ENSMUSG00000032744	Heyl	Hey3|Hrt3|bHLHb33|hesr3	hairy/enhancer-of-split related with YRPW motif-like	protein-coding	5.548	9.062	4.609	4.373	4.009	3.133	3.334	3.331	3.388	3.609	3.255	1.359	2.448	3.974	3.717	4.581	3.309	4.359	1.134	2.063	1.664	0.912	0.781	0.592	4.047
369	chr1	83137653	83141074	+	0	NA	Intergenic	L1Md_T|LINE|L1	-20399	NR_027636	71227	Mm.256482	NM_027725	ENSMUSG00000053161	Daw1	4930563E19Rik|4933429D11Rik|Wdr69|b2b1116Clo|b2b1584Clo	dynein assembly factor with WDR repeat domains 1	protein-coding	6.788	0.598	0.239	2.670	2.058	1.043	4.056	4.564	2.951	2.969	0.802	1.536	5.737	5.883	5.331	7.772	5.918	6.293	0.597	0.673	0.134	nan	0.288	0.220	3.278
4986	chr14	122073450	122076323	+	0	NA	Intergenic	Intergenic	32088	NR_015586	319727	Mm.215552	NR_015586		A330035P11Rik	-	RIKEN cDNA A330035P11 gene	ncRNA	4.615	1.410	0.679	3.615	1.350	0.957	2.966	5.056	2.638	3.027	0.934	0.500	3.604	5.203	nan	5.549	3.143	4.833	0.892	0.841	0.560	1.033	0.875	0.509	4.187
7861	chr19	53082143	53083513	+	0	NA	intron (NR_045320, intron 2 of 2)	MER53|DNA|hAT	6576	NR_045320	78457	Mm.76932	NR_045320	ENSMUSG00000099988	1700054A03Rik	-	RIKEN cDNA 1700054A03 gene	ncRNA	5.096	nan	0.498	3.378	4.679	2.577	3.621	5.094	4.023	5.220	3.556	2.651	2.995	4.754	3.045	6.211	6.347	4.911	0.504	0.564	0.358	0.420	0.336	0.236	7.131
1548	chr10	84147369	84149965	+	0	NA	Intergenic	Intergenic	291804	NM_001004363	77976	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	nan	3.361	2.073	2.419	0.649	0.190	3.176	0.426	3.741	4.465	5.629	1.962	0.682	nan	2.617	1.745	0.914	2.651	2.907	1.571	0.567	4.193	nan	1.333	4.325
3900	chr13	24704470	24708245	+	0	NA	TTS (NM_001080381)	TTS (NM_001080381)	55580	NM_020567	57441	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	1.299	8.363	2.871	1.852	1.250	0.489	0.814	0.722	1.273	1.325	1.419	0.665	0.436	0.833	1.334	1.063	0.867	1.603	1.010	1.832	0.926	0.878	0.725	0.532	1.193
5634	chr15	99124331	99126750	+	0	NA	Intergenic	Intergenic	-1305	NM_139140	72572	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	5.742	4.543	2.833	5.536	4.208	3.737	6.531	7.311	3.402	5.450	1.740	3.025	6.428	7.581	5.537	6.052	6.839	5.376	4.073	2.506	3.992	4.132	3.327	4.872	6.904
5434	chr15	79708991	79710366	+	0	NA	intron (NM_013818, intron 4 of 11)	intron (NM_013818, intron 4 of 11)	18782	NM_013818	14904	Mm.19080	NM_013818	ENSMUSG00000042535	Gtpbp1	AL022987|AW045683|C85212|GP-1|Gtpbp	GTP binding protein 1	protein-coding	8.861	1.477	0.667	6.614	4.925	3.014	10.399	9.729	4.797	nan	nan	2.324	10.741	8.153	9.562	8.399	7.028	7.344	1.676	1.020	0.754	nan	1.108	0.713	9.747
4053	chr13	44768433	44770112	+	0	NA	intron (NM_001205044, intron 2 of 18)	intron (NM_001205044, intron 2 of 18)	38001	NM_001205043	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	3.064	2.162	1.272	1.712	4.929	2.816	5.324	3.580	2.735	3.265	2.834	2.022	2.676	5.755	5.452	4.122	1.990	3.418	3.352	nan	1.327	2.531	2.266	2.309	2.783
11677	chr5	122871285	122873111	+	0	NA	intron (NM_001003953, intron 22 of 22)	intron (NM_001003953, intron 22 of 22)	22010	NM_030564	80751	Mm.388529	NM_030564	ENSMUSG00000029474	Rnf34	AW061037|AW536122|BC004042|C88279|RIFF	ring finger protein 34	protein-coding	5.381	11.870	4.073	8.935	4.228	3.494	5.911	5.257	4.933	7.737	5.173	4.104	4.951	6.956	8.737	7.456	4.499	6.715	4.688	2.231	3.323	5.741	3.653	4.080	9.863
1823	chr10	122348749	122351500	+	0	NA	Intergenic	L1Md_T|LINE|L1	-98375	NM_016847	54140	Mm.4351	NM_016847	ENSMUSG00000020123	Avpr1a	AVPR|Avpr1|V1a|V1aR	arginine vasopressin receptor 1A	protein-coding	6.150	1.713	0.699	5.228	4.982	2.212	4.934	2.652	2.997	4.653	0.871	1.165	4.618	7.166	3.908	4.438	3.998	nan	1.616	2.441	1.470	2.635	2.068	1.386	6.303
5026	chr15	7545719	7549624	+	0	NA	Intergenic	MMERVK10C-int|LTR|ERVK	-149276	NM_001289498	268780	Mm.203208	NM_178748	ENSMUSG00000042961	Egflam	5930412K08|AU040377	EGF-like, fibronectin type III and laminin G domains	protein-coding	7.584	0.716	0.532	4.704	3.959	1.520	7.398	6.956	7.037	8.350	3.702	1.525	9.413	8.021	6.316	5.820	4.687	8.409	1.030	0.627	0.328	0.402	0.246	0.144	4.918
5999	chr16	32113225	32116116	+	0	NA	Intergenic	Intergenic	14868	NM_025892	66994	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	6.994	4.495	2.639	4.791	4.548	3.367	3.837	4.211	4.418	3.763	3.323	2.751	3.380	4.143	3.502	5.200	3.450	5.053	1.389	1.966	2.121	1.244	nan	1.134	4.881
5975	chr16	30184117	30190373	+	0	NA	Intergenic	Intergenic	80287	NM_027904	71756	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	9.377	3.303	1.032	8.339	4.392	2.953	8.294	10.443	6.599	8.567	6.493	4.158	9.733	11.275	10.095	13.003	6.595	11.141	5.893	2.610	2.040	7.774	nan	2.575	15.313
6613	chr17	36155851	36161777	+	0	NA	intron (NR_033517, intron 2 of 3)	intron (NR_033517, intron 2 of 3)	9723	NM_001081032	667977	Mm.441651	NM_001081032	ENSMUSG00000073402	Gm8909	EG667977|H2-Tw5l|H2-gs17	predicted gene 8909	protein-coding	7.077	11.965	5.654	4.555	4.368	2.779	4.065	4.522	3.404	3.790	5.882	1.908	3.613	6.103	4.552	6.447	4.726	4.273	3.029	2.690	2.336	1.471	2.788	2.660	6.478
5520	chr15	85061956	85063221	+	0	NA	3' UTR (NM_133750, exon 9 of 9)	3' UTR (NM_133750, exon 9 of 9)	25526	NM_133750	73225	Mm.247535	NM_133750	ENSMUSG00000022434	Fam118a	-	family with sequence similarity 118, member A	protein-coding	2.433	0.590	0.128	2.993	0.949	0.584	nan	5.032	nan	1.864	4.593	2.529	2.876	4.821	3.059	3.300	2.995	1.768	nan	0.338	0.176	nan	0.261	0.258	2.225
15131	chr9	58120731	58124287	+	0	NA	Intergenic	L1MB2|LINE|L1	-3686	NM_001166282	382077	Mm.335193	NM_029212	ENSMUSG00000037716	Ccdc33	4930535E21Rik|Gm1117|Tzip1	coiled-coil domain containing 33	protein-coding	5.623	6.914	3.328	7.447	7.177	6.250	3.763	4.497	4.019	4.644	3.772	2.537	5.143	6.606	4.766	5.046	3.413	6.070	1.991	2.195	2.777	1.842	1.517	1.192	6.073
12060	chr6	14848285	14853203	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-50605	NM_053242	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	4.342	nan	0.957	3.040	2.921	1.767	5.059	1.608	nan	3.641	0.412	0.880	7.530	4.887	8.850	nan	10.020	6.283	2.039	0.459	0.546	1.912	3.962	3.796	6.985
8527	chr2	115865150	115872000	+	0	NA	intron (NM_001346047, intron 11 of 13)	intron (NM_001346047, intron 11 of 13)	196044	NM_001346044	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	0.715	0.702	0.564	0.493	0.289	0.144	0.428	0.415	0.382	0.327	0.306	0.226	nan	0.208	0.353	nan	0.474	0.441	6.440	2.851	1.594	2.122	3.773	2.834	nan
8051	chr2	27329234	27332092	+	0	NA	intron (NR_133905, intron 2 of 29)	intron (NR_133905, intron 2 of 29)	-83360	NM_138665	192166	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	7.122	6.926	2.197	7.297	2.340	1.552	6.587	8.427	nan	9.104	5.034	2.607	6.536	7.461	7.766	10.394	6.057	7.797	4.810	1.631	1.753	6.131	2.556	3.754	15.220
10121	chr4	57964944	57972044	+	0	NA	Intergenic	Intergenic	-12083	NM_011660	22166	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	7.459	11.297	4.732	7.905	4.709	1.764	nan	6.941	4.463	6.096	4.845	3.185	5.535	7.702	6.400	7.824	3.324	7.145	nan	1.779	0.975	5.492	1.533	1.211	8.571
13827	chr7	139903079	139907619	+	0	NA	intron (NM_177261, intron 3 of 30)	intron (NM_177261, intron 3 of 30)	10653	NM_177261	76484	Mm.44442	NM_177261	ENSMUSG00000066129	Kndc1	2410012C07Rik|B830014K08Rik|VKIND|very-kind	kinase non-catalytic C-lobe domain (KIND) containing 1	protein-coding	6.406	3.024	0.931	7.352	1.466	0.715	4.138	3.950	4.068	5.394	1.957	1.209	4.754	4.905	5.262	7.379	3.811	8.010	2.081	1.187	1.103	2.072	0.992	0.685	10.639
1496	chr10	80019793	80025322	+	0	NA	intron (NM_001347074, intron 10 of 22)	intron (NM_001347074, intron 10 of 22)	2882	NM_027521	70719	Mm.243954	NM_027521	ENSMUSG00000035697	Hmha1	6330406L22Rik|AW539505|Ha-1	histocompatibility (minor) HA-1	protein-coding	5.828	5.483	1.951	6.241	2.449	1.617	3.896	4.887	3.502	5.367	3.193	2.135	3.662	5.409	nan	6.113	3.935	5.544	nan	1.237	1.370	2.785	1.597	1.487	9.517
8864	chr2	156002591	156007629	+	0	NA	promoter-TSS (NM_001145351)	promoter-TSS (NM_001145351)	-683	NM_001145351	320095	Mm.442175	NM_001145351	ENSMUSG00000074646	6430550D23Rik	-	RIKEN cDNA 6430550D23 gene	protein-coding	nan	10.887	4.190	9.413	5.073	2.883	7.161	9.263	6.466	nan	5.778	3.457	nan	9.936	9.186	10.578	8.289	nan	nan	2.620	2.544	6.125	3.430	3.336	nan
9772	chr3	122171753	122188324	+	0	NA	TTS (NM_007378)	TTS (NM_007378)	-65519	NM_008129	14630	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	2.161	1.596	0.577	3.265	1.363	0.667	3.238	4.930	2.998	nan	2.746	3.104	3.072	2.511	2.189	nan	1.315	3.427	4.946	2.508	1.800	5.728	nan	2.356	nan
10049	chr4	46468644	46471385	+	0	NA	intron (NM_130889, intron 5 of 6)	intron (NM_130889, intron 5 of 6)	19088	NM_130889	67628	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	3.588	5.318	2.372	2.695	3.555	1.752	1.469	2.664	2.707	2.710	1.957	1.715	2.461	4.449	3.398	3.351	2.108	4.189	1.066	0.819	0.776	nan	0.680	0.546	4.483
11181	chr5	36730534	36735813	+	0	NA	Intergenic	B2_Mm1t|SINE|B2	15506	NM_133724	117197	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	4.490	0.991	0.394	2.688	1.376	0.620	5.770	3.868	3.633	4.421	3.249	1.841	5.604	6.442	6.426	6.082	4.123	4.783	5.211	2.189	1.430	4.613	3.212	2.134	6.465
1108	chr10	17153536	17154751	+	0	NA	Intergenic	L1_Mus2|LINE|L1	-58361	NR_038020	100504235	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	4.113	0.892	0.745	3.096	2.483	2.058	4.146	3.923	3.497	3.823	1.560	0.676	7.158	4.403	4.658	4.461	3.221	4.828	1.238	0.666	0.750	1.034	1.335	0.834	2.630
2282	chr11	60638168	60640291	+	0	NA	Intergenic	Intergenic	-60461	NM_001159405	16897	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	lethal giant larvae homolog 1 (Drosophila)	protein-coding	4.972	0.628	0.489	2.547	4.245	4.624	5.548	5.805	4.026	4.165	1.276	1.288	6.803	6.290	5.282	5.078	6.232	4.473	nan	0.510	0.852	0.424	0.566	1.048	3.785
1014	chr1	191176113	191179082	+	0	NA	intron (NM_007498, intron 1 of 3)	intron (NM_007498, intron 1 of 3)	5736	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	4.890	0.396	0.305	3.121	3.020	1.450	5.801	3.267	3.421	3.465	0.598	0.677	6.993	6.016	6.293	nan	6.309	5.521	3.262	1.544	0.808	1.753	1.571	1.435	5.678
2760	chr11	98965808	98968702	+	0	NA	intron (NM_001176528, intron 2 of 7)	intron (NM_001176528, intron 2 of 7)	6784	NM_001176528	19401	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	2.205	nan	0.641	1.321	0.664	0.516	4.589	4.502	2.637	2.106	7.660	3.758	3.311	2.839	2.433	2.232	nan	1.844	0.858	nan	0.364	1.012	nan	nan	1.619
843	chr1	167634385	167640126	+	0	NA	intron (NM_001159731, intron 8 of 8)	intron (NM_001159731, intron 8 of 8)	18990	NM_001159731	20183	Mm.3475	NM_009107	ENSMUSG00000015843	Rxrg	Nr2b3	retinoid X receptor gamma	protein-coding	5.540	7.268	2.052	5.711	2.222	1.368	1.440	2.390	nan	3.273	2.057	1.003	nan	2.102	2.454	2.829	1.557	3.497	0.978	2.157	1.814	nan	nan	0.547	nan
2529	chr11	79864953	79868282	+	0	NA	Intergenic	Intergenic	95770	NM_144826	216987	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	5.527	0.911	0.907	3.628	3.411	2.634	3.319	2.482	4.309	5.097	0.739	1.110	5.056	7.206	nan	6.449	3.866	6.970	0.976	0.870	nan	0.654	0.576	0.497	5.963
6499	chr17	29387592	29391301	+	0	NA	Intergenic	Intergenic	28532	NM_001159538	26382	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	1.137	1.021	0.583	1.438	0.918	0.159	3.024	1.921	1.386	1.712	1.127	0.362	1.597	4.355	2.709	nan	1.378	1.901	3.749	1.602	1.015	3.985	3.274	2.044	2.154
8926	chr2	160554651	160572178	+	0	NA	Intergenic	Intergenic	-82483	NM_009408	21969	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	6.283	5.484	1.489	7.297	2.699	1.320	3.685	5.549	nan	5.838	3.176	1.874	nan	5.909	5.734	8.078	4.986	6.927	nan	1.566	1.114	2.960	0.916	0.804	10.020
14105	chr8	27880231	27887631	+	0	NA	Intergenic	Lx2B|LINE|L1	200922	NR_033590	666422	Mm.484413	NR_033590	ENSMUSG00000110372	Gm8096	EG666422	3-phosphoglycerate dehydrogenase pseudogene	pseudo	2.528	nan	1.267	1.089	1.132	0.604	0.648	1.858	1.597	2.062	0.271	0.534	1.214	2.758	1.676	1.707	1.096	1.621	2.001	2.638	2.002	6.565	1.359	1.100	1.783
7846	chr19	47141312	47143548	+	0	NA	intron (NM_001081271, intron 1 of 1)	B1_Mur4|SINE|Alu	1744	NM_001081271	546729	Mm.439624	NM_001081271	ENSMUSG00000079258	Calhm1	EG546729	calcium homeostasis modulator 1	protein-coding	5.689	13.257	6.297	7.233	4.541	4.917	6.611	6.469	5.178	8.884	4.123	3.358	5.289	6.627	6.623	8.184	5.580	6.748	2.677	1.879	2.652	4.475	2.943	5.330	11.103
2315	chr11	62460756	62463436	+	0	NA	intron (NM_001039536, intron 1 of 6)	B1_Mm|SINE|Alu	3636	NM_001039536	327942	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	6.059	6.417	2.599	5.755	3.053	2.204	5.596	7.228	5.095	7.469	3.027	3.527	5.077	7.163	7.443	8.229	5.369	6.607	nan	3.758	3.101	6.520	3.822	5.266	nan
4677	chr14	55303766	55307849	+	0	NA	Intergenic	Intergenic	83800	NM_027790	71412	Mm.85484	NM_027790	ENSMUSG00000022209	Dhrs2	5430405K24Rik|Hep27	dehydrogenase/reductase member 2	protein-coding	7.176	7.581	2.687	6.768	3.857	2.174	5.449	7.434	5.115	7.658	4.911	2.745	6.072	8.883	7.979	8.761	4.299	6.686	3.311	2.516	1.954	3.792	2.990	2.061	9.332
15089	chr9	54458631	54461706	+	0	NA	intron (NM_172771, intron 7 of 43)	intron (NM_172771, intron 7 of 43)	41458	NM_172771	235380	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	1.167	2.912	1.318	1.195	0.448	0.466	0.589	nan	1.085	1.010	7.858	3.698	0.378	0.611	0.502	0.837	0.485	0.858	0.908	1.027	0.797	0.469	0.538	0.588	0.963
13063	chr7	29525980	29527671	+	0	NA	Intergenic	Intergenic	-21365	NM_001081028	74206	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	7.052	12.440	3.104	8.786	1.825	1.277	5.889	7.678	5.556	6.601	4.964	2.649	7.685	6.842	9.612	9.696	4.462	8.624	4.557	1.057	1.276	6.593	2.315	1.572	12.006
14436	chr8	89386589	89388794	+	0	NA	Intergenic	Intergenic	-343529	NM_021390	58198	Mm.214361	NM_021390	ENSMUSG00000031665	Sall1	Msal-3	sal-like 1 (Drosophila)	protein-coding	4.446	4.328	5.012	2.477	3.910	2.145	1.310	2.289	2.051	2.605	1.460	1.325	1.419	1.537	1.153	2.189	1.979	1.959	nan	1.371	1.285	0.753	1.229	1.198	1.823
11438	chr5	92815933	92824275	+	0	NA	intron (NM_001077595, intron 1 of 9)	intron (NM_001077595, intron 1 of 9)	10722	NM_001077595	27428	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	0.527	0.741	0.401	0.662	0.263	0.134	0.499	0.444	0.457	0.431	0.652	0.656	0.224	0.422	0.473	0.712	0.574	0.595	1.157	1.187	0.565	6.244	0.894	0.639	0.629
14358	chr8	77734730	77742237	+	0	NA	Intergenic	Intergenic	-14031	NM_010332	13617	Mm.283168	NM_010332	ENSMUSG00000031616	Ednra	ET-AR|ETa|Gpcr10	endothelin receptor type A	protein-coding	1.588	nan	0.208	2.167	0.499	0.442	nan	4.366	nan	1.715	0.447	0.427	3.967	4.533	6.702	6.465	3.743	2.406	4.038	1.993	1.665	7.669	2.245	1.992	4.299
11306	chr5	66556489	66559044	+	0	NA	intron (NM_001310626, intron 1 of 15)	ORR1D1|LTR|ERVL-MaLR	61051	NM_009686	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	3.092	2.401	1.153	2.603	1.868	0.533	4.769	3.040	2.713	2.494	3.004	2.576	2.661	4.442	5.408	6.148	2.990	4.660	1.003	0.417	0.344	nan	0.942	0.318	4.468
610	chr1	133862761	133871538	+	0	NA	Intergenic	ORR1A4-int|LTR|ERVL-MaLR	40024	NM_054076	269120	Mm.59985	NM_054076	ENSMUSG00000010311	Optc	-	opticin	protein-coding	1.913	1.294	0.614	2.430	0.960	0.629	4.966	5.993	3.164	3.124	3.305	3.067	3.400	4.828	3.788	4.083	2.913	4.670	0.762	0.570	0.408	0.708	0.665	0.391	3.431
514	chr1	120567875	120570076	+	0	NA	Intergenic	Intergenic	-33512	NM_010133	13798	Mm.2657	NM_010133	ENSMUSG00000058665	En1	En-1|Mo-en.1|engrailed-1	engrailed 1	protein-coding	2.359	0.689	0.237	1.699	1.774	0.840	4.710	1.740	2.259	3.041	0.667	0.428	5.467	6.104	4.526	8.823	3.877	4.427	0.737	0.473	0.487	0.510	0.346	0.428	3.216
13722	chr7	130487718	130489680	+	0	NA	intron (NM_001029895, intron 7 of 11)	intron (NM_001029895, intron 7 of 11)	30881	NM_001136054	11907	Mm.216321	NM_013799	ENSMUSG00000030850	Ate1	AI225793|AW547406	arginyltransferase 1	protein-coding	3.090	2.524	1.120	4.331	3.585	2.244	3.119	5.046	3.872	2.902	1.416	1.079	3.178	4.574	4.906	3.172	1.950	6.463	1.449	0.366	0.187	1.251	0.720	0.878	4.877
11477	chr5	99711622	99715989	+	0	NA	intron (NR_030692, intron 1 of 3)	intron (NR_030692, intron 1 of 3)	15255	NR_030692	319818	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	3.100	0.735	0.563	3.803	3.199	2.154	1.727	3.827	6.461	6.474	0.903	1.950	3.181	5.441	4.297	3.786	2.923	7.041	0.705	0.508	0.281	0.771	0.575	0.282	1.153
14788	chr8	128031765	128038765	+	0	NA	Intergenic	Intergenic	242960	NR_105822	102465212		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	2.240	nan	0.576	nan	1.420	0.709	nan	nan	2.002	2.316	1.030	0.605	2.276	2.898	nan	4.419	2.489	3.578	nan	2.136	1.421	5.674	1.652	nan	3.979
14320	chr8	73399824	73402538	+	0	NA	Intergenic	ETnERV2-int|LTR|ERVK	-47641	NM_010687	16795	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	1.266	nan	0.420	1.581	2.591	2.383	4.192	2.655	2.114	2.067	0.416	1.665	2.110	3.232	3.257	3.446	2.810	2.556	0.526	0.548	0.786	nan	0.454	0.559	3.331
6426	chr17	26512534	26514717	+	0	NA	Intergenic	Intergenic	-5153	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	1.357	0.529	0.193	1.306	0.992	0.228	4.273	2.236	1.124	1.136	0.711	0.228	3.017	3.379	4.381	4.213	2.288	2.613	1.040	1.243	0.649	2.470	0.921	0.523	4.585
14536	chr8	108136680	108138449	+	0	NA	Intergenic	Intergenic	447113	NR_077224	109215	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	3.680	3.603	0.855	6.377	2.606	2.057	3.202	5.413	2.854	4.465	1.333	1.396	2.188	3.254	4.001	5.723	3.002	4.513	0.676	1.042	1.903	1.188	0.956	1.786	6.192
14299	chr8	73033018	73038994	+	0	NA	intron (NM_001317391, intron 7 of 15)	intron (NM_001317391, intron 7 of 15)	19494	NR_039551	100628574		NR_039551	ENSMUSG00000093140	Mir28b	mmu-mir-28b	microRNA 28b	ncRNA	6.880	nan	4.055	5.301	7.117	6.213	8.610	9.009	nan	5.364	4.182	2.934	9.911	8.241	8.374	9.224	7.570	6.257	2.862	2.508	4.164	4.393	2.353	3.684	9.762
14152	chr8	36437346	36442187	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-49425	NM_176952	319582	Mm.180924	NM_176952	ENSMUSG00000039620	6430573F11Rik	Kiaa1456|TRM9L	RIKEN cDNA 6430573F11 gene	protein-coding	6.720	2.369	0.780	2.784	2.495	1.039	3.664	10.646	3.142	4.286	4.489	2.249	8.018	8.883	5.520	7.427	5.434	3.511	2.692	1.335	0.754	2.976	2.679	1.770	nan
10718	chr4	135644732	135646243	+	0	NA	Intergenic	Intergenic	18832	NR_027909	73937	Mm.292326	NM_028688	ENSMUSG00000086788	1700029M20Rik	4930406E24Rik	RIKEN cDNA 1700029M20 gene	ncRNA	nan	16.170	3.344	2.079	0.377	0.080	0.567	1.039	1.216	1.090	2.327	1.046	0.710	0.954	2.009	1.950	0.657	1.760	9.789	2.562	2.546	13.668	5.022	4.401	1.434
1994	chr11	18917351	18921172	+	0	NA	intron (NM_001193271, intron 8 of 12)	B1_Mus1|SINE|Alu	99708	NM_001193271	17268	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	4.845	nan	0.946	7.183	2.219	1.281	1.945	1.083	2.799	3.605	6.411	3.875	1.390	3.201	2.401	2.748	2.109	4.167	1.092	2.035	1.604	1.779	2.545	2.503	3.982
7336	chr18	65602161	65606600	+	0	NA	intron (NM_207255, intron 2 of 5)	intron (NM_207255, intron 2 of 5)	15235	NR_105742	100526497		NR_105742	ENSMUSG00000077113	Mir466p	mmu-mir-466p	microRNA 466p	ncRNA	6.089	0.965	0.830	2.061	6.005	4.026	5.072	4.973	3.069	3.151	2.795	1.295	5.196	4.324	2.877	2.414	4.616	3.353	0.829	0.765	0.700	0.455	0.966	1.022	3.086
6083	chr16	44765953	44769124	+	0	NA	intron (NM_021325, intron 1 of 6)	B1_Mm|SINE|Alu	1802	NM_021325	57781	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	5.808	2.015	1.726	2.447	2.318	1.237	1.155	nan	1.576	2.322	1.357	0.701	1.422	1.981	1.795	1.744	1.756	1.587	0.728	1.797	1.039	0.457	0.439	0.541	2.063
13650	chr7	120656240	120659909	+	0	NA	intron (NM_025899, intron 13 of 13)	B1_Mus2|SINE|Alu	12176	NM_001040137	67983	Mm.394441	NM_001040136	ENSMUSG00000030887	Pdzd9	4930408O21Rik	PDZ domain containing 9	protein-coding	5.763	10.156	5.004	6.514	2.959	1.673	6.290	7.670	4.844	7.534	7.925	6.566	6.885	6.972	8.136	6.869	5.294	6.628	3.798	3.432	2.330	3.975	4.088	3.170	8.548
12132	chr6	31462851	31471150	+	0	NA	intron (NM_013791, intron 9 of 17)	intron (NM_013791, intron 9 of 17)	68172	NM_013791	27418	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	6.646	0.861	0.659	5.554	3.165	1.694	7.446	7.187	6.936	8.806	2.243	1.870	9.714	10.029	6.688	9.042	7.191	9.744	nan	1.639	1.127	2.329	2.613	1.714	7.973
3907	chr13	28753979	28755340	+	0	NA	intron (NR_045053, intron 3 of 8)	B1F|SINE|Alu	-43786	NR_105787	102466635		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	5.340	0.659	0.577	0.866	2.162	1.289	7.610	5.586	1.844	1.474	0.966	0.661	2.524	4.609	5.112	4.784	3.738	3.248	0.801	1.083	1.006	0.925	1.338	0.803	5.538
3857	chr13	17894772	17897930	+	0	NA	intron (NM_019491, intron 2 of 4)	intron (NM_019491, intron 2 of 4)	47866	NM_019491	56044	Mm.27348	NM_019491	ENSMUSG00000008859	Rala	3010001O15Rik|AW322615|Ral|Rasl1	v-ral simian leukemia viral oncogene A (ras related)	protein-coding	7.759	16.181	4.256	12.385	6.364	6.854	7.303	8.656	6.997	19.943	7.573	4.139	7.933	9.500	9.861	11.981	5.142	11.623	6.079	1.861	4.215	7.297	4.075	6.390	20.428
8416	chr2	84800897	84806281	+	0	NA	intron (NM_019949, intron 2 of 3)	B4|SINE|B4	4761	NM_019949	56791	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	1.378	10.907	5.727	1.867	1.378	0.896	0.603	0.544	1.100	1.044	0.639	0.410	0.270	0.924	0.631	1.208	1.026	0.922	0.445	0.873	0.750	0.925	0.384	0.353	0.813
1136	chr10	19674245	19679761	+	0	NA	Intergenic	ORR1A4|LTR|ERVL-MaLR	-35584	NM_172786	237313	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	8.550	1.860	0.984	3.801	3.675	1.985	3.475	7.399	6.789	6.702	2.130	3.750	4.280	9.724	6.694	7.782	6.149	8.105	2.353	1.807	1.005	2.844	2.098	1.554	8.607
1175	chr10	23570691	23575048	+	0	NA	Intergenic	Intergenic	212582	NR_037680	100529074	Mm.371846	NR_037680	ENSMUSG00000070063	Snora33	ACA33|MBI-42	small nucleolar RNA, H/ACA box 33	snoRNA	3.308	0.706	0.394	3.531	3.142	1.971	2.328	3.612	4.430	4.763	3.541	1.054	3.845	2.328	3.526	6.039	6.054	5.762	0.998	1.103	0.797	1.308	0.706	0.502	2.965
14466	chr8	93976165	93979545	+	0	NA	intron (NM_011787, intron 10 of 13)	intron (NM_011787, intron 10 of 13)	34785	NM_011787	23802	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	3.464	0.968	0.644	1.123	1.117	0.784	1.865	4.743	2.485	2.573	0.603	0.629	1.917	2.968	3.414	5.635	6.364	2.866	0.868	0.907	0.390	0.757	0.969	0.523	2.952
9235	chr3	37262521	37270094	+	0	NA	Intergenic	B1F|SINE|Alu	-33671	NM_021782	60505	Mm.157689	NM_021782	ENSMUSG00000027718	Il21	IL-21	interleukin 21	protein-coding	1.526	1.314	0.624	1.106	1.410	0.763	4.262	2.411	nan	1.183	0.411	0.356	3.440	4.969	3.620	4.604	3.983	1.893	nan	0.649	0.390	nan	0.689	0.380	2.735
1683	chr10	98702325	98708576	+	0	NA	Intergenic	Intergenic	-209702	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	10.953	2.750	1.408	3.856	6.724	3.573	9.747	8.725	7.095	8.274	7.962	4.335	8.778	10.829	8.925	8.730	6.654	8.397	nan	1.057	0.667	nan	1.242	1.156	8.495
11491	chr5	102910121	102911934	+	0	NA	3' UTR (NM_001081567, exon 14 of 14)	3' UTR (NM_001081567, exon 14 of 14)	66020	NM_001346585	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	7.277	1.781	0.473	3.588	1.773	0.746	5.898	5.226	3.272	3.709	1.750	0.855	4.577	5.141	6.670	6.363	4.037	5.071	3.266	3.098	4.302	5.877	2.589	2.910	8.899
15675	chrX	11699545	11702327	+	0	NA	Intergenic	Intergenic	373114	NM_001114529	236663	Mm.473680	NM_001114529	ENSMUSG00000069038	H2al1j	EG236663|Gm4906	H2A histone family member L1J	protein-coding	3.215	0.821	0.163	2.866	1.544	0.879	2.348	3.745	1.576	2.703	1.330	0.574	1.969	3.323	2.821	4.042	2.438	3.262	0.543	0.481	0.776	0.552	0.337	0.295	5.255
1382	chr10	67566305	67570227	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	-19311	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	8.070	2.224	1.564	5.544	5.270	2.234	3.773	4.142	4.315	5.048	4.173	2.398	6.191	8.060	4.164	5.214	5.233	5.552	1.565	1.837	1.333	1.456	0.689	0.659	4.509
15469	chr9	106355745	106358320	+	0	NA	Intergenic	Intergenic	-11600	NM_153459	235584	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	2.172	3.253	1.321	3.001	1.234	0.788	1.689	1.759	nan	nan	1.458	0.666	1.152	2.193	1.898	2.422	1.153	2.367	4.808	3.732	3.536	6.918	4.278	3.412	4.149
1452	chr10	76187356	76189236	+	0	NA	intron (NM_133184, intron 14 of 14)	intron (NM_133184, intron 14 of 14)	19113	NR_030443	751554		NR_030443	ENSMUSG00000076068	Mir678	Mirn678|mmu-mir-678	microRNA 678	ncRNA	5.788	1.450	0.692	nan	2.525	1.199	1.720	2.154	3.738	5.423	1.041	0.829	3.193	6.377	nan	3.414	5.256	4.550	nan	0.504	0.881	1.047	0.678	0.579	7.198
13906	chr7	149615406	149617270	+	0	NA	Intergenic	Intergenic	4301503	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	2.994	1.211	0.300	2.221	0.936	0.432	4.704	4.746	2.590	2.309	7.203	1.814	3.351	3.530	4.982	4.183	2.067	3.465	0.918	0.322	0.443	1.251	nan	0.753	5.810
2384	chr11	69732405	69736621	+	0	NA	exon (NM_001291068, exon 29 of 29)	exon (NM_001291068, exon 29 of 29)	24120	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	9.139	11.040	3.920	8.563	7.025	5.729	8.157	7.984	5.513	8.793	6.863	4.342	7.809	10.853	9.017	9.872	7.270	7.423	4.885	3.940	4.366	5.758	nan	4.584	9.836
15529	chr9	110996475	111001018	+	0	NA	Intergenic	B4A|SINE|B4	-9033	NM_153100	235636	Mm.441138	NM_153100	ENSMUSG00000066319	Rtp3	Tmem7	receptor transporter protein 3	protein-coding	7.042	1.395	1.521	4.749	4.589	3.420	4.579	4.870	3.811	4.788	4.347	1.822	5.552	8.143	7.259	7.471	3.519	nan	2.159	1.495	1.139	1.715	1.560	1.642	8.946
5771	chr16	8861185	8865381	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	33183	NM_001081400	69053	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	4.932	1.474	0.838	3.312	3.810	2.684	4.046	9.155	3.832	3.559	4.608	2.701	4.895	5.032	4.448	5.645	2.731	5.184	1.312	0.903	0.847	1.509	0.783	0.666	5.219
15619	chr9	122025649	122029926	+	0	NA	Intergenic	Intergenic	-31761	NM_153540	215494	Mm.402151	NM_153540	ENSMUSG00000066235	Pomgnt2	Ago61|C85492|Gtdc2	protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2	protein-coding	7.068	5.048	1.278	9.134	3.490	1.597	4.068	5.114	5.494	9.680	3.905	1.619	4.701	5.987	6.591	6.932	3.600	9.145	3.371	1.577	0.894	5.721	2.404	2.340	9.035
9042	chr2	167897233	167912345	+	0	NA	Intergenic	MLT1K|LTR|ERVL-MaLR	-27538	NM_011201	19246	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	7.707	1.426	0.474	4.833	5.905	4.345	9.090	9.944	5.063	6.205	3.303	2.687	8.772	nan	8.069	9.998	7.880	nan	nan	1.230	1.218	2.268	1.315	1.381	10.990
11283	chr5	65875815	65885854	+	0	NA	intron (NM_001081105, intron 1 of 2)	intron (NM_001081105, intron 1 of 2)	17265	NM_001081105	74734	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	5.343	6.942	4.701	5.464	3.920	3.105	4.778	6.599	4.250	5.295	3.618	3.344	5.199	7.006	6.593	6.216	5.379	5.684	3.013	2.171	2.288	nan	2.086	2.332	6.070
1337	chr10	60551805	60552861	+	0	NA	intron (NR_045556, intron 7 of 68)	MERVL-int|LTR|ERVL	144157	NM_001252635	22295	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	5.782	1.262	0.557	2.857	2.786	1.519	7.800	6.539	1.807	4.046	0.992	0.875	4.093	5.212	5.902	7.300	4.616	3.524	4.875	1.911	3.003	5.543	5.627	3.846	8.199
11416	chr5	91205656	91209332	+	0	NA	Intergenic	Intergenic	67895	NM_009704	11839	Mm.8039	NM_009704	ENSMUSG00000029378	Areg	AR|Mcub|Sdgf	amphiregulin	protein-coding	1.447	0.605	0.480	0.713	0.804	0.668	2.030	3.151	1.307	0.883	6.275	3.976	1.234	2.283	1.128	1.316	0.902	1.419	0.580	0.351	0.133	0.374	0.377	0.272	0.800
8710	chr2	136776062	136786962	+	0	NA	3' UTR (NM_001291056, exon 8 of 8)	3' UTR (NM_001291056, exon 8 of 8)	68062	NM_001291056	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	3.704	0.731	0.525	1.396	1.037	0.430	4.643	4.594	2.844	2.941	2.546	1.864	4.844	2.621	4.035	6.335	4.876	4.026	1.445	0.906	0.518	1.592	0.576	0.395	4.535
11604	chr5	115776278	115778733	+	0	NA	Intergenic	Intergenic	-45946	NM_001080808	75665	Mm.233914	NM_001080808	ENSMUSG00000041609	Ccdc64	2210403N09Rik|BICDR-1|Bicdl1	coiled-coil domain containing 64	protein-coding	8.852	11.295	4.802	8.818	6.973	4.966	9.743	6.498	5.564	9.161	6.385	4.045	5.733	8.974	8.783	8.264	6.782	7.134	5.615	4.872	6.083	5.431	nan	8.168	11.966
11355	chr5	74540094	74541332	+	0	NA	intron (NM_001159574, intron 3 of 15)	B1_Mus1|SINE|Alu	5231	NM_001159574	66899	Mm.272468	NM_024183	ENSMUSG00000029227	Fip1l1	1300019H17Rik|Rje	FIP1 like 1 (S. cerevisiae)	protein-coding	2.419	0.426	0.061	2.358	1.918	0.982	3.738	1.962	2.890	3.286	2.060	0.927	2.161	3.577	2.334	4.020	3.093	4.153	0.529	0.646	0.201	0.446	0.472	0.197	3.851
6524	chr17	31194686	31195792	+	0	NA	intron (NM_001163776, intron 2 of 12)	intron (NM_001163776, intron 2 of 12)	2510	NM_080727	140765	Mm.214638	NM_080727	ENSMUSG00000024034	Tmprss3	-	transmembrane protease, serine 3	protein-coding	8.794	16.365	2.841	5.740	2.211	2.284	2.625	2.782	4.282	6.460	2.302	1.956	2.233	5.172	3.675	5.375	1.662	5.025	8.791	5.799	4.731	9.737	7.641	7.507	9.168
13037	chr7	27894127	27898963	+	0	NA	Intergenic	L1Md_F3|LINE|L1	32885	NM_028538	73430	Mm.379224	NM_028538	ENSMUSG00000070709	Zfp974	1700049G17Rik|AV321011|BB026409	zinc finger protein 974	protein-coding	5.202	0.485	0.364	2.784	3.411	2.090	3.701	4.540	4.422	6.208	3.684	2.142	6.180	7.648	4.100	5.501	8.475	4.453	0.598	1.034	0.769	0.188	1.238	0.963	3.797
11944	chr5	145722964	145729991	+	0	NA	Intergenic	Intergenic	-6341	NM_017396	53973	Mm.379071	NM_017396	ENSMUSG00000075551	Cyp3a41a	Cyp3a41	cytochrome P450, family 3, subfamily a, polypeptide 41A	protein-coding	4.574	3.202	1.188	nan	3.120	1.482	7.964	4.802	nan	6.153	4.515	3.190	4.159	6.621	5.136	nan	4.231	4.158	1.452	1.691	0.740	1.353	1.952	1.695	nan
3101	chr11	120029902	120031999	+	0	NA	intron (NM_001198785, intron 1 of 13)	intron (NM_001198785, intron 1 of 13)	10831	NM_001198787	11302	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	1.604	nan	0.159	2.622	0.824	0.483	nan	nan	1.459	nan	0.548	0.336	2.748	5.382	4.261	3.545	1.791	nan	0.996	nan	0.750	2.682	1.253	0.636	3.101
2098	chr11	44310696	44313108	+	0	NA	Intergenic	L1Md_T|LINE|L1	-88161	NM_001303244	16160	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	0.786	10.591	5.971	0.859	1.226	0.317	0.514	nan	0.864	0.820	0.571	0.573	0.300	0.728	0.762	nan	0.554	nan	nan	0.529	0.250	nan	nan	0.388	0.737
3837	chr13	9096902	9098897	+	0	NA	intron (NM_001311117, intron 1 of 16)	intron (NM_001311117, intron 1 of 16)	4018	NM_172585	217980	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	4.074	1.933	1.115	2.944	3.664	1.073	1.432	4.271	2.856	2.981	1.922	2.099	2.625	3.415	3.322	3.459	2.534	4.269	1.267	1.238	0.783	1.021	1.896	1.109	2.779
6215	chr16	92572295	92573561	+	0	NA	Intergenic	MIR|SINE|MIR	74781	NM_172469	209195	Mm.44747	NM_172469	ENSMUSG00000022949	Clic6	5730466J16Rik|AL022908|AW045520|CLIC1L	chloride intracellular channel 6	protein-coding	6.344	nan	1.093	1.529	3.953	2.488	2.096	1.962	2.185	3.021	1.862	0.748	1.552	3.609	2.342	2.671	2.036	nan	0.921	1.021	0.897	nan	0.614	0.431	3.124
3018	chr11	116948337	116949768	+	0	NA	intron (NM_172948, intron 8 of 16)	intron (NM_172948, intron 8 of 16)	30189	NM_172948	268510	Mm.35141	NM_172948	ENSMUSG00000043857	Mgat5b	C330018B01|GnT-IX|mGnTVB	mannoside acetylglucosaminyltransferase 5, isoenzyme B	protein-coding	5.619	2.781	1.152	5.008	3.293	1.824	2.787	2.774	4.082	3.222	1.084	1.063	2.808	3.195	3.134	3.879	2.834	4.290	1.080	nan	0.871	1.115	0.652	0.518	4.601
9645	chr3	104795960	104798780	+	0	NA	exon (NM_008619, exon 14 of 20)	exon (NM_008619, exon 14 of 20)	8336	NM_007484	11853	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	7.258	1.778	0.902	5.576	4.288	2.362	3.796	2.885	3.773	5.344	6.353	1.786	2.682	5.736	nan	3.349	2.665	6.070	0.922	1.430	0.608	1.038	1.435	0.713	7.054
11594	chr5	115022420	115025662	+	0	NA	intron (NM_029012, intron 1 of 10)	B1_Mus1|SINE|Alu	12517	NM_029012	74585	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	3.393	0.756	0.376	3.462	1.175	0.454	3.596	3.715	2.821	4.221	1.005	0.304	4.127	6.571	4.333	5.138	3.391	4.389	nan	nan	0.722	1.900	nan	0.850	8.138
2604	chr11	87556594	87571980	+	0	NA	Intergenic	Intergenic	-14102	NM_001284398	18952	Mm.2214	NM_011129	ENSMUSG00000020486	Sept4	ARTS|Bh5|OTTMUSG00000001265|Pnutl2	septin 4	protein-coding	nan	22.943	9.554	nan	1.415	0.936	1.378	1.057	1.765	2.110	2.046	0.656	1.066	1.816	2.055	2.123	1.407	2.039	0.792	1.770	1.705	nan	0.451	0.470	nan
8795	chr2	150611722	150613912	+	0	NA	Intergenic	RMER10A|LTR|ERVL	-4294	NM_027977	71881	Mm.26599	NM_027977	ENSMUSG00000033096	Apmap	2310001A20Rik|AI314817	adipocyte plasma membrane associated protein	protein-coding	5.500	7.728	1.966	5.086	1.400	0.697	5.921	6.576	3.412	4.778	3.832	3.792	6.199	5.328	6.939	10.416	5.889	6.192	nan	1.550	1.496	4.762	2.510	2.310	11.351
4974	chr14	121543313	121551576	+	0	NA	intron (NM_001347596, intron 50 of 52)	intron (NM_001347596, intron 50 of 52)	-42190	NM_053079	56643	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	6.083	0.883	0.635	4.757	4.694	3.126	3.781	7.275	4.867	7.264	1.684	1.342	4.217	7.208	nan	6.416	2.897	7.084	5.979	5.138	3.718	8.944	7.160	6.036	6.636
7171	chr18	38080106	38095106	+	0	NA	Intergenic	Intergenic	-88637	NM_001205336	106952	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	9.026	3.979	2.545	5.788	7.173	5.272	6.146	8.718	6.113	6.935	4.626	3.558	7.378	8.662	5.724	6.133	6.950	7.624	1.850	2.788	2.332	2.123	1.785	1.554	6.161
12079	chr6	21898976	21900954	+	0	NA	Intergenic	Arthur1|DNA|hAT-Tip100	-47450	NM_173007	269831	Mm.21950	NM_173007	ENSMUSG00000029669	Tspan12	9030619E17|AI426782|AI663988|AW111457|Tm4sf12	tetraspanin 12	protein-coding	6.796	7.673	2.940	6.809	4.015	3.063	5.972	7.517	nan	6.444	2.670	1.864	5.768	6.494	7.899	11.579	6.999	6.122	4.965	1.839	2.446	5.121	3.496	4.472	8.058
6690	chr17	47430359	47434031	+	0	NA	intron (NM_029296, intron 3 of 3)	RSINE1|SINE|B4	-4444	NM_145489	224833	Mm.218444	NM_145489	ENSMUSG00000034382	AI661453	-	expressed sequence AI661453	protein-coding	4.766	5.978	1.873	4.207	2.089	0.776	9.212	6.098	3.537	3.814	3.456	3.551	5.321	6.150	8.042	7.037	4.546	4.813	2.640	1.282	0.566	1.278	0.860	0.602	6.673
8357	chr2	72919753	72921389	+	0	NA	Intergenic	ORR1B1|LTR|ERVL-MaLR	58710	NM_001098425	20687	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	5.520	0.684	0.435	3.150	1.851	0.778	3.437	4.057	3.268	4.101	0.756	0.453	5.627	5.523	4.801	6.905	4.259	4.709	0.876	0.957	1.086	1.032	0.736	1.002	10.727
5651	chr15	99692115	99694583	+	0	NA	intron (NM_001289791, intron 1 of 9)	intron (NM_001289791, intron 1 of 9)	1594	NM_001289791	11419	Mm.440107	NM_009597	ENSMUSG00000023017	Asic1	AI843610|ASIC|ASIC1a|Accn2|B530003N02Rik|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding	6.185	1.487	0.690	5.345	3.443	3.638	7.517	8.093	4.673	3.150	1.247	2.531	10.927	5.968	6.260	5.967	9.285	4.967	1.095	0.745	1.017	0.895	3.552	3.570	7.109
9479	chr3	89699699	89711058	+	0	NA	Intergenic	Intergenic	-9644	NM_001038587	56417	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	3.874	3.747	1.849	3.172	2.822	1.734	4.115	6.335	2.019	2.739	2.751	2.459	4.493	7.366	3.281	nan	3.026	3.301	nan	1.743	1.517	3.543	4.551	3.579	2.947
12840	chr6	145069000	145072464	+	0	NA	intron (NM_007532, intron 1 of 10)	RLTR13B1|LTR|ERVK	5425	NM_007532	12035	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	4.181	14.777	6.853	4.598	2.207	1.379	7.670	nan	3.069	3.962	1.800	0.936	5.509	5.874	4.542	5.138	1.798	4.326	3.298	nan	1.273	nan	1.097	0.688	4.287
15554	chr9	116201967	116203728	+	0	NA	Intergenic	L1_Mus2|LINE|L1	-27484	NM_009371	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	5.260	1.750	0.992	3.423	4.980	2.224	2.087	1.998	2.813	2.966	2.178	1.007	2.474	4.990	3.547	4.767	3.000	5.193	1.032	1.053	0.626	0.596	nan	0.328	8.751
15295	chr9	72892067	72904606	+	0	NA	intron (NM_175485, intron 15 of 19)	MERVL-int|LTR|ERVL	-27314	NM_028116	72135	Mm.273605	NM_028116	ENSMUSG00000034910	Pygo1	2600014C22Rik	pygopus 1	protein-coding	4.841	3.768	1.535	4.625	2.932	2.002	3.821	5.922	5.398	5.333	3.733	2.803	5.486	6.706	nan	5.553	3.756	5.225	nan	2.420	2.349	3.337	5.594	5.200	8.453
10676	chr4	134142639	134150254	+	0	NA	intron (NM_144527, intron 9 of 13)	MTC|LTR|ERVL-MaLR	-17693	NM_080559	73723	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	nan	1.620	0.623	2.005	1.255	0.819	2.359	1.271	nan	1.136	0.817	0.708	0.602	1.159	1.132	1.178	0.416	nan	4.135	2.052	2.076	7.371	nan	1.361	2.249
332	chr1	77438007	77442718	+	0	NA	intron (NM_007936, intron 4 of 17)	intron (NM_007936, intron 4 of 17)	56406	NR_105770	102465180		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	4.659	0.693	0.608	2.041	1.407	1.105	4.047	2.692	3.499	2.610	4.775	4.168	3.163	2.174	2.902	6.362	4.110	nan	nan	nan	0.729	0.687	nan	0.635	3.981
1965	chr11	8466315	8487973	+	0	NA	intron (NM_001083587, intron 20 of 30)	intron (NM_001083587, intron 20 of 30)	187391	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	2.741	1.998	0.778	2.211	1.085	0.560	1.986	3.865	2.723	2.361	3.439	2.778	2.239	2.050	3.203	3.458	2.106	2.747	4.610	nan	1.673	7.481	4.214	2.765	2.395
12774	chr6	134590715	134592204	+	0	NA	Intergenic	(GAAA)n|Simple_repeat|Simple_repeat	-24546	NM_008514	16974	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	5.456	6.879	3.085	8.674	1.923	1.860	5.848	6.029	5.180	8.587	4.041	3.785	6.580	8.094	nan	7.580	4.901	6.007	nan	2.324	1.954	5.501	2.098	2.717	10.123
745	chr1	153790618	153793892	+	0	NA	intron (NM_001243223, intron 17 of 20)	RMER12C|LTR|ERVK	42829	NM_011882	24014	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0.940	0.824	0.423	0.702	0.427	0.263	0.451	0.426	nan	0.626	0.356	0.884	0.411	0.770	0.449	nan	0.649	0.589	nan	1.595	0.782	3.843	nan	0.951	0.956
11330	chr5	68399136	68403696	+	0	NA	Intergenic	Intergenic	369581	NM_001018019	433899	Mm.332422	NM_001018019	ENSMUSG00000068082	Grxcr1	Tg(Eno2-Gabrb3)0370Brll|pi|tde	glutaredoxin, cysteine rich 1	protein-coding	2.246	0.726	0.658	1.767	1.396	0.481	2.806	1.033	2.344	1.977	0.470	0.889	2.188	1.936	2.292	2.571	2.353	3.712	4.355	5.273	2.290	nan	5.220	2.884	1.192
3691	chr12	106233776	106235638	+	0	NA	Intergenic	Intergenic	212959	NR_036593	76639	Mm.375609	NR_036593	ENSMUSG00000092066	1700121N20Rik	-	RIKEN cDNA 1700121N20 gene	ncRNA	1.139	1.845	1.330	1.050	1.571	0.577	0.727	nan	nan	nan	0.638	0.928	0.347	nan	0.670	0.651	1.025	0.634	5.362	3.636	4.160	2.071	6.445	6.751	nan
7779	chr19	42096140	42097964	+	0	NA	intron (NM_145501, intron 1 of 8)	RSINE1|SINE|B4	6617	NM_145501	84095	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	3.665	1.794	0.607	2.243	1.135	0.382	1.043	1.943	2.255	2.173	7.155	2.272	0.701	1.504	1.149	1.727	nan	2.070	0.423	0.278	0.321	0.694	0.480	0.106	4.176
11809	chr5	136495422	136497772	+	0	NA	intron (NM_001291234, intron 1 of 22)	intron (NM_001291234, intron 1 of 22)	69384	NM_001291239	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	2.718	1.236	0.633	2.690	1.897	1.004	2.262	2.979	1.806	2.151	1.256	0.857	2.252	4.659	3.525	3.799	2.363	2.530	0.726	0.568	0.624	0.755	nan	0.577	4.961
3650	chr12	103010560	103017976	+	0	NA	intron (NM_001081017, intron 5 of 48)	MLT1A0-int|LTR|ERVL-MaLR	65409	NM_001081017	217843	Mm.387073	NM_177621	ENSMUSG00000021198	Unc79	9030205A07Rik|Mlca3	unc-79 homolog (C. elegans)	protein-coding	7.226	0.903	0.847	nan	3.101	1.532	5.616	5.257	nan	4.613	1.786	1.684	7.311	5.737	6.046	8.063	6.417	5.493	0.928	1.052	0.973	1.490	0.752	0.647	nan
5673	chr15	100266024	100267895	+	0	NA	Intergenic	Intergenic	-13878	NM_183109	75002	Mm.261400	NM_183109	ENSMUSG00000045631	Tmprss12	4930478A21Rik	transmembrane (C-terminal) protease, serine 12	protein-coding	2.046	0.800	0.654	1.726	2.954	1.575	5.371	8.828	1.628	2.242	0.544	0.954	4.243	6.876	4.321	2.886	4.338	2.383	0.803	0.515	0.353	0.732	0.617	0.474	2.696
15798	chrX	103344015	103347009	+	0	NA	Intergenic	Lx4B|LINE|L1	-10964	NM_009767	12212	Mm.42223	NM_009767	ENSMUSG00000031327	Chic1	Brx|ENSMUSG00000073019|Gm10454	cysteine-rich hydrophobic domain 1	protein-coding	4.512	0.706	1.179	1.656	3.633	2.864	1.007	3.189	1.930	2.478	1.984	0.705	1.396	3.418	1.669	1.958	nan	1.608	0.620	0.969	1.190	0.368	0.411	0.464	1.479
2082	chr11	33911850	33912937	+	0	NA	intron (NM_001190886, intron 1 of 7)	intron (NM_001190886, intron 1 of 7)	-50620	NM_031169	16533	Mm.6206	NM_031169	ENSMUSG00000020155	Kcnmb1	BKbeta1	potassium large conductance calcium-activated channel, subfamily M, beta member 1	protein-coding	3.599	4.833	3.973	2.052	1.626	0.699	1.187	1.632	3.313	2.972	2.045	0.680	1.113	3.116	2.321	1.973	1.827	2.700	0.848	1.356	1.300	0.661	0.848	0.469	1.672
12475	chr6	92808780	92811040	+	0	NA	intron (NM_175314, intron 20 of 29)	L1MB5|LINE|L1	91531	NM_175314	101401	Mm.158235	NM_175314	ENSMUSG00000030022	Adamts9	1810011L16Rik|8430403M15Rik|AW743315|E030027K14Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 9	protein-coding	3.486	0.531	0.168	nan	1.610	0.834	7.854	4.537	3.415	2.099	0.273	0.348	6.757	6.232	7.956	11.285	6.487	5.223	nan	0.684	0.236	0.613	0.501	0.085	5.404
11619	chr5	117258670	117260816	+	0	NA	intron (NM_001081308, intron 16 of 19)	intron (NM_001081308, intron 16 of 19)	27821	NM_018858	23980	Mm.195898	NM_018858	ENSMUSG00000032959	Pebp1	HCNP|Pbp|Pbp1|Pbpr|Rkip	phosphatidylethanolamine binding protein 1	protein-coding	0.253	0.360	0.422	0.247	0.078	0.047	0.242	0.179	0.041	0.304	0.157	0.092	0.102	0.105	0.136	0.280	0.186	0.239	5.349	nan	5.468	4.445	4.691	4.616	0.255
13750	chr7	133845038	133848726	+	0	NA	intron (NM_025850, intron 1 of 10)	ID_B1|SINE|B4	-64097	NM_001286031	101437	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	4.918	30.266	8.764	5.417	1.372	0.563	1.537	2.015	nan	3.810	2.791	1.023	1.538	2.627	3.082	3.254	1.843	3.060	3.042	2.341	2.191	2.789	2.421	1.989	5.688
3789	chr12	117777448	117779346	+	0	NA	Intergenic	Lx8b|LINE|L1	-65464	NM_146040	217946	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	nan	0.883	0.541	1.681	1.104	1.033	2.878	5.045	2.431	2.168	1.786	0.898	3.794	5.815	4.697	nan	3.437	2.843	1.605	0.778	1.011	1.348	0.996	1.234	3.823
15687	chrX	13045250	13047326	+	0	NA	TTS (NR_038158)	TTS (NR_038158)	4273	NR_038158	70489	Mm.383563	NR_038158	ENSMUSG00000087424	5730405O15Rik	-	RIKEN cDNA 5730405O15 gene	ncRNA	3.227	0.661	0.368	3.796	2.640	1.020	1.493	3.631	3.209	3.433	2.033	2.314	1.747	3.217	2.566	2.044	1.216	3.849	2.012	1.065	0.581	1.778	0.579	0.272	1.738
2713	chr11	96908324	96914976	+	0	NA	exon (NM_030248, exon 8 of 14)	exon (NM_030248, exon 8 of 14)	4864	NM_001308183	80280	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	7.186	nan	1.385	4.483	4.008	2.323	5.937	6.601	3.334	4.387	2.558	1.239	4.767	7.861	5.638	7.062	nan	5.877	2.013	nan	1.124	1.653	nan	nan	8.797
4182	chr13	58316339	58317711	+	0	NA	intron (NM_175214, intron 10 of 16)	Lx5c|LINE|L1	-3876	NR_105788	102465191		NR_105788	ENSMUSG00000098258	Mir6369	Gm27615|mmu-mir-6369	microRNA 6369	ncRNA	10.826	21.173	4.761	14.868	4.940	4.063	10.201	9.664	6.357	21.506	8.193	5.008	10.096	12.883	14.097	16.025	5.085	14.876	7.484	1.398	3.950	9.777	2.172	5.670	25.213
6279	chr16	97876116	97881704	+	0	NA	intron (NM_174847, intron 8 of 13)	intron (NM_174847, intron 8 of 13)	-1619	NR_105929	102465581		NR_105929	ENSMUSG00000105138	Mir6964	mmu-mir-6964	microRNA 6964	ncRNA	5.324	0.615	0.643	3.025	3.648	1.950	5.691	7.499	nan	4.912	1.887	2.616	7.201	8.298	6.057	8.418	6.691	6.411	4.357	2.379	1.947	2.858	4.476	3.387	6.813
10755	chr4	137511311	137512889	+	0	NA	intron (NM_008305, intron 10 of 96)	intron (NM_008305, intron 10 of 96)	-26186	NR_105985	102465616		NR_105985	ENSMUSG00000099134	Mir7018	Gm27606|mmu-mir-7018	microRNA 7018	ncRNA	2.180	0.587	0.167	3.262	9.728	6.825	5.318	2.239	nan	2.638	6.005	1.210	2.057	6.619	2.544	2.062	0.811	2.687	0.817	0.896	0.801	0.997	nan	0.967	4.200
5461	chr15	81004821	81011257	+	0	NA	exon (NM_134091, exon 8 of 22)	exon (NM_134091, exon 8 of 22)	30274	NM_134091	105835	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	3.079	nan	0.698	nan	3.601	2.640	2.963	5.091	1.962	nan	nan	1.020	3.908	4.940	3.774	2.940	nan	3.582	1.078	0.777	0.686	nan	0.788	0.632	2.912
12940	chr7	16999145	17002393	+	0	NA	Intergenic	MLTR73|LTR|ERV1	6181	NM_001101535	434130	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	ENSMUSG00000041117	coiled-coil domain containing 8	protein-coding	9.248	2.263	1.444	6.313	8.240	7.103	12.115	13.786	6.668	7.532	3.630	3.477	9.913	12.637	8.145	8.253	9.726	8.028	1.234	1.692	1.723	1.247	1.526	1.653	12.786
10289	chr4	97475355	97477086	+	0	NA	Intergenic	Lx8|LINE|L1	-105723	NM_001122952	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	3.213	nan	0.157	2.366	2.129	0.774	2.040	4.109	3.369	4.787	1.135	0.766	2.397	5.428	2.948	4.824	2.277	4.101	1.034	0.827	0.268	nan	0.786	0.382	3.289
9822	chr3	135321400	135322467	+	0	NA	exon (NM_178877, exon 4 of 13)	exon (NM_178877, exon 4 of 13)	14233	NM_178877	97086	Mm.441764	NM_178877	ENSMUSG00000037994	Slc9b2	C80638|NHA2|NHE10|Nhedc2|nha-oc|nhaoc	solute carrier family 9, subfamily B (NHA2, cation proton antiporter 2), member 2	protein-coding	4.552	nan	0.901	2.366	1.414	0.797	7.332	5.728	2.490	2.635	3.628	2.284	4.291	4.019	5.423	4.703	5.431	3.995	2.078	1.120	0.967	1.143	0.755	0.441	3.161
1619	chr10	93942812	93944276	+	0	NA	Intergenic	RLTR31D_MM|LTR|ERVK	20319	NR_029764	723908		NR_029764	ENSMUSG00000065607	Mir331	Mirn331|mmu-mir-331	microRNA 331	ncRNA	6.534	1.342	0.635	5.278	3.390	2.015	3.035	3.104	2.701	4.162	2.579	1.457	1.793	4.364	4.973	5.219	3.095	4.927	nan	1.206	1.186	nan	0.700	0.528	5.005
6034	chr16	34099521	34101094	+	0	NA	intron (NM_177357, intron 34 of 59)	L2a|LINE|L2	-133304	NM_009471	22247	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	2.592	0.508	0.043	1.174	1.345	0.522	3.454	2.079	1.645	3.053	0.307	0.125	5.153	6.267	2.980	4.351	3.780	3.605	0.626	0.542	0.156	0.497	0.604	0.604	2.755
5881	chr16	21261808	21263534	+	0	NA	intron (NR_046162, intron 3 of 4)	L1ME4c|LINE|L1	-6605	NR_106145	102465781		NR_106145	ENSMUSG00000098400	Mir7680	Gm27417|mmu-mir-7680	microRNA 7680	ncRNA	0.845	0.771	0.843	0.722	0.948	0.641	0.808	0.908	1.111	0.911	0.635	1.153	0.641	0.804	0.399	0.955	0.910	1.125	2.991	2.990	2.477	2.870	4.182	3.928	0.590
4265	chr13	81270472	81276464	+	0	NA	intron (NM_054053, intron 84 of 89)	intron (NM_054053, intron 84 of 89)	309394	NR_015587	319983	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	7.125	2.004	1.234	4.576	4.765	2.885	2.502	3.652	3.606	4.609	3.580	2.629	2.384	4.912	3.115	3.597	2.377	4.963	1.490	1.935	1.418	1.813	1.583	0.993	3.703
5219	chr15	59279149	59280881	+	0	NA	Intergenic	L2c|LINE|L2	-26933	NR_045613	100416830	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	5.030	1.104	0.298	3.763	2.519	1.266	5.283	8.951	3.991	4.005	4.387	3.019	10.798	7.358	8.364	6.749	6.581	5.624	3.144	0.909	0.571	3.103	2.840	1.587	4.086
7598	chr19	16020620	16021619	+	0	NA	Intergenic	Lx2|LINE|L1	36044	NR_045355	100502653	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	3.059	0.751	0.313	1.424	1.244	0.145	4.068	5.223	3.343	2.929	3.677	3.038	2.515	3.712	3.239	4.024	3.853	5.204	0.578	0.319	0.368	0.482	0.502	0.702	4.652
7569	chr19	10396213	10402342	+	0	NA	intron (NM_173067, intron 1 of 9)	intron (NM_173067, intron 1 of 9)	10187	NM_173068	54525	Mm.182654	NM_018801	ENSMUSG00000024743	Syt7	AI851541|B230112P13Rik	synaptotagmin VII	protein-coding	0.594	0.643	0.340	0.493	0.333	0.162	0.481	0.820	nan	0.743	0.369	0.392	0.327	0.585	0.706	nan	0.833	1.013	1.255	1.482	1.240	5.060	1.869	1.405	0.955
4007	chr13	39918468	39921309	+	0	NA	Intergenic	MTE2a|LTR|ERVL-MaLR	368123	NM_172143	218165	Mm.364096	NM_172143	ENSMUSG00000047094	Ofcc1	opo	orofacial cleft 1 candidate 1	protein-coding	0.454	8.512	5.926	0.372	0.100	0.131	nan	nan	nan	nan	0.413	0.184	0.182	0.264	0.215	nan	0.295	nan	0.818	1.106	0.801	1.306	0.641	0.373	nan
6567	chr17	34477594	34486452	+	0	NA	Intergenic	RLTR10B2|LTR|ERVK	-6086	NM_030746	632126	Mm.484958	NM_030746	ENSMUSG00000058435	Btnl4	Btn3a3|EG632126|NG11	butyrophilin-like 4	protein-coding	nan	12.756	5.984	3.304	1.580	0.695	2.124	3.042	2.410	3.164	0.680	0.542	1.856	2.198	4.091	5.956	3.925	3.542	0.605	0.845	0.427	0.346	0.295	0.171	4.195
12648	chr6	118895583	118897966	+	0	NA	intron (NM_001256002, intron 3 of 47)	intron (NM_001256002, intron 3 of 47)	16616	NR_046053	74363	Mm.399403	NR_046053		4931430N09Rik	-	RIKEN cDNA 4931430N09 gene	ncRNA	5.253	0.754	0.323	3.219	3.388	1.715	4.457	2.303	4.952	5.675	1.445	0.473	7.289	6.198	5.049	9.796	5.830	6.636	1.346	0.878	0.463	1.188	nan	1.112	8.413
9845	chr3	142001916	142003990	+	0	NA	intron (NM_001277217, intron 1 of 11)	L1Md_A|LINE|L1	-20689	NM_007560	12167	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	4.572	nan	0.843	2.443	2.496	1.236	8.210	5.403	3.014	2.215	3.241	2.173	7.834	6.786	7.284	5.127	4.730	4.715	1.348	1.287	0.236	1.822	1.017	0.643	4.871
13235	chr7	63101531	63102759	+	0	NA	intron (NM_007390, intron 9 of 9)	intron (NM_007390, intron 9 of 9)	110381	NM_007390	11441	Mm.113464	NM_007390	ENSMUSG00000030525	Chrna7	Acra7|alpha7|nAchR	cholinergic receptor, nicotinic, alpha polypeptide 7	protein-coding	2.939	2.545	1.612	2.463	4.374	4.198	1.849	1.794	3.228	3.342	1.812	1.800	3.082	4.839	2.590	2.313	2.291	3.188	2.756	1.661	2.230	2.531	2.874	2.474	3.119
10903	chr4	149186686	149188907	+	0	NA	exon (NM_001290995, exon 43 of 49)	exon (NM_001290995, exon 43 of 49)	-21089	NM_001081274	110208	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	1.674	nan	0.901	4.041	6.250	4.027	0.960	2.002	0.995	1.279	0.775	0.743	1.529	4.987	1.150	0.689	0.307	2.069	2.511	1.846	0.574	6.494	7.688	4.239	0.944
11241	chr5	53859911	53862350	+	0	NA	intron (NM_144517, intron 13 of 20)	intron (NM_144517, intron 13 of 20)	51503	NM_144517	67249	Mm.28823	NM_144517	ENSMUSG00000039178	Tbc1d19	2810453K03Rik	TBC1 domain family, member 19	protein-coding	5.472	0.807	0.567	2.329	1.967	1.031	10.079	6.293	2.123	2.326	6.916	2.171	5.902	6.380	7.077	7.031	5.618	3.878	0.988	0.644	0.905	2.183	1.277	1.556	5.230
10022	chr4	43738640	43747040	+	0	NA	Intergenic	PB1D10|SINE|Alu	-9019	NR_040667	319973	Mm.233955	NR_040667		A630077J23Rik	-	RIKEN cDNA A630077J23 gene	ncRNA	12.267	nan	0.570	9.894	6.955	3.547	10.764	11.485	7.326	10.939	4.130	2.628	10.460	15.964	11.106	12.783	7.074	11.478	1.175	1.102	0.987	nan	0.951	0.749	18.370
12067	chr6	17120044	17122217	+	0	NA	Intergenic	Intergenic	55981	NM_207176	21753	Mm.436548	NM_011570	ENSMUSG00000029552	Tes	D6Ertd352e|TESS|Tes1|Tes2|testin2	testis derived transcript	protein-coding	7.266	nan	0.388	7.668	5.114	2.436	6.107	6.167	5.065	5.236	4.488	2.786	6.565	7.036	8.290	8.724	5.745	8.846	0.978	0.901	1.354	1.822	0.832	0.397	6.514
8615	chr2	124434529	124440188	+	0	NA	intron (NM_001290997, intron 4 of 20)	intron (NM_001290997, intron 4 of 20)	-172938	NM_199238	214968	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	7.637	2.452	1.112	6.426	2.504	1.419	5.151	5.756	3.230	4.827	1.655	2.055	4.780	6.240	4.404	3.671	2.524	3.629	nan	1.472	1.108	2.656	1.028	0.882	5.809
2740	chr11	98253145	98255748	+	0	NA	TTS (NM_001109626)	TTS (NM_001109626)	-8160	NR_039579	100628613		NR_039579	ENSMUSG00000093176	Mir5119	mmu-mir-5119|mu-mir-5119	microRNA 5119	ncRNA	5.745	nan	0.324	3.960	2.744	1.256	7.602	7.659	2.754	4.790	3.935	2.305	7.370	10.165	8.091	8.325	5.186	5.198	1.599	nan	0.959	1.262	nan	nan	10.112
5703	chr15	101541259	101549329	+	0	NA	intron (NM_053249, intron 4 of 8)	intron (NM_053249, intron 4 of 8)	5365	NM_053249	114566	Mm.458432	NM_053249	ENSMUSG00000049548	Krt82	Krt2-20	keratin 82	protein-coding	1.045	0.523	0.301	0.282	0.388	0.174	1.313	2.554	0.554	0.577	9.503	2.421	0.939	0.610	2.184	nan	1.533	1.291	0.531	0.356	0.167	0.749	0.412	0.301	1.709
208	chr1	58666135	58668757	+	0	NA	intron (NM_001347056, intron 9 of 13)	intron (NM_001347056, intron 9 of 13)	14805	NR_045007	100504501	Mm.440933	NR_045007	ENSMUSG00000102059	Gm20257	-	caspase 8 pseudogene	pseudo	9.539	0.644	0.377	4.885	2.969	2.579	4.539	7.636	4.619	5.933	3.095	1.007	8.349	8.745	5.046	7.209	8.883	6.204	0.380	1.237	1.632	0.588	0.791	0.725	4.235
14882	chr9	20775903	20799972	+	0	NA	intron (NM_016919, intron 32 of 66)	MTD-int|LTR|ERVL-MaLR	27130	NM_001317388	53867	Mm.334994	NM_016919	ENSMUSG00000004098	Col5a3	-	collagen, type V, alpha 3	protein-coding	5.100	11.745	7.029	3.890	2.492	1.713	3.427	4.273	3.652	4.857	2.241	1.163	3.963	5.408	4.402	4.799	3.335	4.889	2.123	1.647	1.371	2.001	1.275	1.226	6.387
6318	chr17	7152478	7153808	+	0	NA	Intergenic	Intergenic	-16972	NM_011299	20112	Mm.268383	NM_011299	ENSMUSG00000023809	Rps6ka2	90kDa|D17Wsu134e|Rps6ka-rs1|Rsk3|p90rsk|pp90rsk	ribosomal protein S6 kinase, polypeptide 2	protein-coding	1.974	4.353	1.073	4.075	0.428	0.461	3.356	2.701	2.405	2.814	1.512	1.638	3.986	2.597	4.787	nan	3.286	3.180	nan	0.848	0.837	3.976	0.719	0.529	5.044
2773	chr11	100272134	100278021	+	0	NA	Intergenic	Intergenic	-5206	NM_212483	68239	Mm.158190	NM_212483	ENSMUSG00000053654	Krt42	2410039E07Rik|K17n|Ka22|ecat6	keratin 42	protein-coding	2.570	nan	0.502	3.364	1.447	1.221	4.971	4.643	1.872	3.429	5.930	1.695	3.158	4.192	4.579	4.694	nan	3.211	1.801	nan	2.163	2.987	nan	nan	5.040
292	chr1	73161440	73166014	+	0	NA	Intergenic	Intergenic	139141	NR_038002	69449	Mm.250447	NR_038001	ENSMUSG00000101968	1700027A15Rik	-	RIKEN cDNA 1700027A15 gene	ncRNA	0.543	0.820	0.515	0.378	0.146	0.055	0.636	0.581	0.511	0.559	0.309	0.456	0.500	0.341	0.736	nan	0.492	nan	7.388	nan	0.924	5.446	nan	2.430	nan
9540	chr3	95560851	95563755	+	0	NA	intron (NM_001289532, intron 2 of 14)	intron (NM_001289532, intron 2 of 14)	2626	NM_001289532	67981	Mm.179050	NM_026489	ENSMUSG00000028109	Hormad1	4921522K05Rik|Nohma	HORMA domain containing 1	protein-coding	2.107	1.888	1.163	1.715	2.293	1.409	2.318	3.046	2.493	2.711	6.198	2.580	2.418	3.593	2.054	nan	2.091	2.316	0.918	0.677	0.524	0.376	0.626	0.277	1.621
12876	chr6	147653213	147655045	+	0	NA	Intergenic	Intergenic	-36112	NR_033636	100039727	Mm.396220	NR_033636	ENSMUSG00000085077	1700049E15Rik	Gm15761|OTTMUSG00000026044	RIKEN cDNA 1700049E15 gene	ncRNA	3.238	0.514	0.383	1.085	1.449	0.450	3.410	3.731	2.581	2.680	2.535	1.181	4.924	4.836	5.230	5.852	2.866	5.391	1.032	nan	0.047	nan	0.303	0.105	nan
10082	chr4	49687784	49694961	+	0	NA	intron (NM_001033351, intron 6 of 8)	intron (NM_001033351, intron 6 of 8)	-9389	NM_001004025	19059	Mm.46125	NM_001004025	ENSMUSG00000028310	Ppp3r2	CaNB2|CnB2	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type II)	protein-coding	4.533	nan	0.507	3.203	2.617	1.172	4.989	3.597	6.920	6.489	0.713	0.424	7.237	6.747	6.921	8.014	4.939	7.693	0.774	0.654	0.339	nan	0.378	0.169	6.247
6455	chr17	27758850	27761727	+	0	NA	intron (NM_001271511, intron 3 of 3)	intron (NM_001271511, intron 3 of 3)	-31337	NM_013891	30051	Mm.26768	NM_013891	ENSMUSG00000024215	Spdef	PDEF|Pse	SAM pointed domain containing ets transcription factor	protein-coding	6.654	8.802	3.150	5.419	2.652	1.864	7.705	4.455	3.731	9.039	5.609	3.077	3.819	5.869	6.693	8.645	5.356	5.378	6.390	3.505	4.606	6.105	4.324	4.931	11.097
4039	chr13	43529000	43531185	+	0	NA	Intergenic	Intergenic	30099	NM_001081059	76137	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	1.053	8.357	7.213	nan	0.636	0.228	0.669	0.773	1.092	0.920	0.510	0.584	0.775	0.626	0.690	0.910	0.838	nan	1.436	nan	1.076	1.055	1.108	0.694	nan
2445	chr11	74349073	74353168	+	0	NA	Intergenic	Intergenic	-3448	NM_146709	258704	Mm.451658	NM_146709	ENSMUSG00000054406	Olfr411	MOR255-3	olfactory receptor 411	protein-coding	nan	1.105	0.635	0.269	0.164	0.234	nan	0.620	0.451	0.373	0.432	0.363	0.244	nan	nan	nan	0.328	nan	6.630	3.724	nan	7.355	5.008	3.916	0.517
13867	chr7	146583481	146588259	+	0	NA	Intergenic	Intergenic	1271035	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	1.703	3.874	1.383	nan	1.648	0.594	1.482	2.111	nan	1.660	1.803	0.883	1.191	1.731	1.763	2.048	1.052	2.519	2.913	3.027	1.674	5.023	nan	1.657	nan
10683	chr4	134392080	134394968	+	0	NA	Intergenic	Intergenic	-2796	NM_133880	100163	Mm.22116	NM_133880	ENSMUSG00000037366	Pafah2	2310074E22Rik|AI507170	platelet-activating factor acetylhydrolase 2	protein-coding	3.651	1.162	0.838	2.350	3.020	1.716	2.757	2.525	4.143	3.949	2.066	1.117	3.277	5.044	3.940	2.714	3.085	4.118	1.730	1.388	1.344	1.922	nan	0.895	2.717
8901	chr2	158000078	158001319	+	0	NA	exon (NM_029282, exon 2 of 7)	exon (NM_029282, exon 2 of 7)	8662	NM_029282	75425	Mm.29068	NM_029282	ENSMUSG00000027650	Tti1	2610036D13Rik|AI449463	TELO2 interacting protein 1	protein-coding	4.042	5.095	1.346	4.694	3.309	1.617	2.399	6.273	nan	2.923	5.396	1.407	1.887	3.049	2.643	3.268	2.150	3.065	nan	0.738	1.138	1.678	0.485	0.371	4.842
291	chr1	73073508	73075390	+	0	NA	Intergenic	Intergenic	49863	NR_038002	69449	Mm.250447	NR_038001	ENSMUSG00000101968	1700027A15Rik	-	RIKEN cDNA 1700027A15 gene	ncRNA	7.213	0.468	0.372	1.411	1.213	0.695	6.654	5.201	3.199	2.519	0.943	2.964	5.938	3.406	3.138	6.148	5.552	3.537	1.499	nan	0.980	1.445	nan	1.721	3.143
3703	chr12	107241492	107243592	+	0	NA	Intergenic	(TTG)n|Simple_repeat|Simple_repeat	492946	NR_045973	74968	Mm.359821	NR_045973	ENSMUSG00000085641	4930465M20Rik	4930431H15Rik	RIKEN cDNA 4930465M20 gene	ncRNA	1.567	0.723	0.228	nan	0.266	0.120	1.590	nan	nan	nan	0.368	0.193	2.015	nan	2.975	3.336	2.534	1.412	0.595	0.383	0.131	0.498	0.592	0.179	6.349
7232	chr18	50221169	50226879	+	0	NA	Intergenic	L1_Mus2|LINE|L1	-54345	NM_001004061	225497	Mm.329435	NM_001004061	ENSMUSG00000035420	Fam170a	Gm93|Znfd	family with sequence similarity 170, member A	protein-coding	2.315	9.118	4.657	1.526	0.933	0.561	1.296	1.255	1.432	1.233	3.098	1.138	1.104	1.175	1.043	0.861	0.834	nan	0.402	0.770	0.471	0.679	0.603	0.368	1.777
8205	chr2	37277618	37279382	+	0	NA	Intergenic	L1Md_F2|LINE|L1	11549	NM_001081010	545417	Mm.379955	NM_001081010		Olfr367-ps	EG545417|MOR128-1|ORL1283|OTTMUSG00000012147|Olfr367	olfactory receptor 367, pseudogene	protein-coding	7.450	14.085	4.065	10.704	3.264	1.940	5.217	7.861	4.227	9.912	5.788	2.799	7.750	6.605	8.421	9.796	6.473	9.443	5.503	1.538	1.968	6.436	2.087	2.812	13.798
114	chr1	37752929	37755544	+	0	NA	TTS (NM_207228)	TTS (NM_207228)	-34425	NM_028096	72097	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	2.405	0.653	0.175	2.258	0.861	0.485	4.797	2.314	2.546	3.140	1.331	1.289	5.348	5.616	4.136	nan	2.023	2.946	4.651	1.955	1.605	6.319	3.126	2.277	3.623
5714	chr15	101928833	101939616	+	0	NA	intron (NM_146063, intron 4 of 8)	L3|LINE|CR1	6100	NM_146063	223917	Mm.162744	NM_146063	ENSMUSG00000061397	Krt79	BC031593	keratin 79	protein-coding	8.770	3.381	1.072	9.410	5.116	3.263	9.483	14.253	4.564	7.122	3.403	2.657	10.624	12.478	8.536	8.535	7.485	7.632	4.584	2.846	2.489	4.219	4.535	4.286	11.609
9045	chr2	168349845	168360390	+	0	NA	Intergenic	Intergenic	-85786	NM_001081134	241794	Mm.425102	NM_001081134	ENSMUSG00000074575	Kcng1	AW536275|OTTMUSG00000016048	potassium voltage-gated channel, subfamily G, member 1	protein-coding	2.759	1.381	0.552	1.488	0.868	0.415	3.989	4.280	2.162	2.123	2.706	3.861	3.737	nan	3.265	4.408	2.443	nan	nan	2.556	2.176	6.869	5.508	4.735	nan
5778	chr16	10354715	10359160	+	0	NA	Intergenic	B4|SINE|B4	-25652	NR_126064	381033	Mm.263108	NR_126064		Gm1600	Gm1776	predicted gene 1600	ncRNA	nan	0.902	0.736	2.247	2.692	1.821	nan	4.577	2.236	2.886	1.366	1.146	3.432	4.392	2.829	3.871	2.704	3.771	1.136	0.865	1.115	1.229	1.192	1.087	3.404
11686	chr5	123219939	123222013	+	0	NA	Intergenic	RLTR11A2|LTR|ERVK	-7214	NM_026000	67151	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	5.655	2.485	1.352	8.615	2.343	1.513	2.988	5.769	4.707	4.155	4.203	3.595	3.720	5.336	5.955	8.011	4.428	4.929	nan	2.088	2.207	5.165	nan	0.842	7.901
4879	chr14	77345055	77352633	+	0	NA	intron (NM_001253759, intron 3 of 19)	intron (NM_001253759, intron 3 of 19)	158024	NR_033141	629678	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	4.903	0.868	0.671	4.757	6.804	3.300	2.512	6.416	4.433	4.841	2.905	1.844	3.394	7.253	4.053	4.082	2.493	7.084	1.186	0.868	0.646	1.023	0.846	0.540	3.258
4894	chr14	79789433	79794344	+	0	NA	Intergenic	ORR1F|LTR|ERVL-MaLR	-20576	NM_021543	18530	Mm.390715	NM_021543	ENSMUSG00000036422	Pcdh8	1700080P15Rik|Papc	protocadherin 8	protein-coding	4.916	8.794	7.532	4.969	3.845	3.801	4.300	5.852	4.279	6.001	3.079	2.899	3.978	4.542	5.338	5.102	3.348	4.885	2.975	1.909	3.736	2.536	4.024	4.723	6.606
73	chr1	33713351	33716367	+	0	NA	Intergenic	ORR1D1|LTR|ERVL-MaLR	-5037	NM_008999	19335	Mm.86744	NM_008999	ENSMUSG00000004768	Rab23	AW545388|opb|opb2	RAB23, member RAS oncogene family	protein-coding	5.578	0.642	0.516	3.187	5.038	3.266	3.022	3.808	4.109	4.351	2.071	1.508	6.509	8.561	4.935	nan	4.304	5.677	0.757	1.002	0.366	0.615	0.590	0.699	4.615
10313	chr4	100840178	100843623	+	0	NA	intron (NM_198037, intron 1 of 26)	intron (NM_198037, intron 1 of 26)	65221	NM_198037	320508	Mm.151962	NM_198037	ENSMUSG00000028532	Cachd1	1190007F10Rik|AI852726|B430218L07Rik|Vwcd1|mKIAA1573	cache domain containing 1	protein-coding	1.791	6.945	1.878	1.722	0.443	0.290	0.836	0.994	nan	nan	0.709	0.582	0.740	0.915	nan	1.389	0.809	1.951	1.023	1.068	0.534	1.175	0.280	0.247	1.675
11371	chr5	77541752	77545115	+	0	NA	Intergenic	MTB|LTR|ERVL-MaLR	77945	NR_131050	69370	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	2.288	1.943	0.889	3.968	1.881	0.818	2.846	2.267	1.926	2.668	4.940	1.573	2.509	5.259	2.759	nan	1.622	4.121	0.867	1.371	1.023	2.611	0.843	0.530	2.244
7886	chr19	55286664	55296038	+	0	NA	intron (NM_027976, intron 15 of 21)	intron (NM_027976, intron 15 of 21)	24681	NM_025883	66980	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369	zinc finger, DHHC domain containing 6	protein-coding	6.508	nan	0.564	4.998	4.156	2.732	11.053	10.363	6.489	8.220	4.747	2.417	8.451	10.459	nan	9.473	9.533	7.539	1.806	1.331	0.917	2.175	2.742	2.176	10.745
15758	chrX	83016268	83018368	+	0	NA	intron (NM_007868, intron 1 of 78)	intron (NM_007868, intron 1 of 78)	68448	NM_007868	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding	6.014	1.218	0.868	2.422	4.187	3.871	4.197	4.846	3.927	3.755	4.569	2.769	4.337	5.901	3.738	5.372	5.185	4.651	1.203	1.449	0.968	0.542	0.736	0.716	2.659
8873	chr2	156255021	156260839	+	0	NA	intron (NM_172674, intron 4 of 17)	(TG)n|Simple_repeat|Simple_repeat	-54543	NM_027585	70873	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	3.957	0.621	0.430	2.956	2.266	1.100	4.391	7.879	nan	nan	1.243	1.005	5.775	6.074	4.437	6.969	5.044	nan	nan	0.926	1.001	0.727	0.713	0.485	nan
5479	chr15	81725838	81729507	+	0	NA	intron (NM_001146174, intron 1 of 15)	intron (NM_001146174, intron 1 of 15)	2247	NM_011241	19387	Mm.270975	NM_011241	ENSMUSG00000022391	Rangap1	C79654|Fug1|mKIAA1835	RAN GTPase activating protein 1	protein-coding	nan	nan	0.495	nan	0.391	0.229	nan	6.646	0.824	nan	nan	0.310	3.482	nan	2.571	1.980	2.881	2.071	1.654	0.813	0.515	4.514	0.867	0.598	1.581
10348	chr4	106653047	106657175	+	0	NA	3' UTR (NM_001285784, exon 2 of 2)	3' UTR (NM_001285784, exon 2 of 2)	4042	NM_001083887	230577	Mm.134029	NM_172272	ENSMUSG00000043572	Pars2	BC027073	prolyl-tRNA synthetase (mitochondrial)(putative)	protein-coding	2.066	5.853	2.796	1.142	0.692	0.329	2.798	nan	1.416	1.127	3.549	1.842	1.983	1.593	2.799	2.176	1.788	nan	1.940	2.158	1.894	4.398	1.602	1.329	2.737
14416	chr8	87555722	87562538	+	0	NA	Intergenic	Intergenic	-4777	NM_177901	330820	Mm.212913	NM_177901	ENSMUSG00000069971	4933402J07Rik	-	RIKEN cDNA 4933402J07 gene	protein-coding	8.930	5.612	2.316	5.287	4.378	3.062	7.742	9.486	nan	5.918	5.524	3.367	6.842	8.363	7.464	9.087	9.298	5.670	nan	3.877	3.445	4.328	3.205	2.913	10.008
9634	chr3	104153428	104157685	+	0	NA	intron (NM_001159354, intron 1 of 20)	intron (NM_001159354, intron 1 of 20)	64850	NM_133853	99470	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding	2.997	0.624	0.504	1.866	2.456	0.619	4.420	3.373	2.924	2.609	2.491	1.740	4.456	3.713	3.003	4.673	3.949	5.151	1.165	0.774	0.387	1.099	0.747	0.379	3.348
241	chr1	64016481	64017740	+	0	NA	Intergenic	Intergenic	25391	NR_105864	102466760		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	6.717	0.481	0.902	0.403	0.664	0.552	3.828	1.964	2.006	2.524	0.578	0.718	4.818	3.040	1.817	nan	nan	nan	1.405	0.755	0.821	0.378	0.586	0.703	2.152
2561	chr11	85123717	85126787	+	0	NA	intron (NM_001029934, intron 1 of 33)	B2_Mm2|SINE|B2	14703	NM_001029934	237898	Mm.178524	NM_001029934	ENSMUSG00000000804	Usp32	2900074J03Rik|6430526O11Rik|AW045245	ubiquitin specific peptidase 32	protein-coding	nan	11.342	3.589	nan	3.298	1.568	5.449	6.164	5.994	9.165	6.203	3.171	6.882	8.340	7.533	8.649	5.416	7.999	6.181	3.103	2.726	nan	4.494	3.746	9.373
8066	chr2	29317314	29322663	+	0	NA	Intergenic	MLT1A1|LTR|ERVL-MaLR	-26822	NM_026896	68975	Mm.330109	NM_026896	ENSMUSG00000026799	Med27	1500015J03Rik|2310042P07Rik|AA682045|Crsp8|D2Ertd434e	mediator complex subunit 27	protein-coding	3.071	1.406	0.766	1.313	2.050	0.954	1.851	4.802	nan	2.298	0.484	0.392	5.255	5.414	2.157	3.338	2.647	3.410	0.907	0.643	0.430	0.861	1.087	0.756	2.254
6007	chr16	32653533	32668290	+	0	NA	intron (NM_016788, intron 1 of 15)	intron (NM_016788, intron 1 of 15)	7286	NR_033493	675921	Mm.404316	NR_033493	ENSMUSG00000075265	Tnk2os	ENSMUSG00000075265|Gm10818	tyrosine kinase, non-receptor 2, opposite strand	ncRNA	5.881	1.841	0.718	4.220	4.322	2.020	5.674	7.798	3.894	5.171	2.504	1.702	6.163	9.997	5.846	8.122	5.565	5.875	4.093	1.884	1.451	4.146	nan	2.423	10.464
1970	chr11	8869402	8877295	+	0	NA	Intergenic	Intergenic	137843	NM_001303610	15574	Mm.42201	NM_008316	ENSMUSG00000020413	Hus1	-	HUS1 checkpoint clamp component	protein-coding	nan	0.559	0.322	0.287	0.133	0.108	0.288	0.208	0.241	0.261	0.190	0.227	0.175	0.255	0.152	0.369	0.404	0.285	4.931	nan	1.203	4.933	4.752	3.008	0.305
4697	chr14	56330019	56336638	+	0	NA	Intergenic	ID4|SINE|ID	-31740	NM_138652	192113	Mm.273271	NM_138652	ENSMUSG00000022229	Atp12a	Atp1al1|HKalpha2|cHKA	ATPase, H+/K+ transporting, nongastric, alpha polypeptide	protein-coding	4.759	nan	0.709	3.836	3.774	3.190	5.000	10.441	4.210	4.646	4.751	2.872	4.446	7.191	6.698	6.724	3.719	5.939	0.633	0.699	0.611	0.686	0.488	0.408	9.178
14709	chr8	124141849	124145450	+	0	NA	Intergenic	Intergenic	-87745	NM_139272	108148	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	5.560	nan	0.302	6.319	3.436	1.711	3.682	8.489	4.293	4.552	2.023	1.990	4.224	4.979	4.411	6.912	3.960	6.038	nan	1.409	1.758	3.024	1.578	nan	6.231
2391	chr11	69839916	69843498	+	0	NA	Intergenic	Intergenic	3182	NM_026982	69186	Mm.248772	NM_026982	ENSMUSG00000070394	Tmem256	1810027O10Rik|3110009M16Rik	transmembrane protein 256	protein-coding	1.777	3.569	1.453	1.478	2.126	0.775	1.166	1.201	0.670	1.470	0.448	0.561	0.389	nan	1.000	0.926	0.761	0.726	3.298	5.436	2.064	3.003	nan	3.998	nan
4125	chr13	51931927	51933712	+	0	NA	Intergenic	Intergenic	86144	NM_011817	23882	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	3.941	1.151	0.297	nan	1.354	0.849	1.505	2.142	1.696	2.048	1.109	0.736	1.134	3.979	1.837	2.492	1.095	1.439	0.533	nan	0.481	0.683	0.682	0.711	2.313
4559	chr14	27884508	27887787	+	0	NA	intron (NM_177814, intron 4 of 15)	L1_Mus1|LINE|L1	263740	NM_177814	238988	Mm.318004	NM_177814	ENSMUSG00000040640	Erc2	6430531D06|CAST|CAST1/ERC2|D14Ertd171e|ELKS2alpha	ELKS/RAB6-interacting/CAST family member 2	protein-coding	1.947	0.840	0.594	2.113	0.736	0.278	3.528	3.944	0.744	0.734	2.452	1.830	2.343	2.132	2.590	nan	nan	1.180	1.375	1.221	0.656	nan	1.350	0.603	4.947
11751	chr5	130404939	130407664	+	0	NA	intron (NM_181045, intron 1 of 6)	intron (NM_181045, intron 1 of 6)	-21670	NM_198665	381673	Mm.192133	NM_198665	ENSMUSG00000052014	A330070K13Rik	Gm1051	RIKEN cDNA A330070K13 gene	protein-coding	4.640	0.770	0.557	3.396	4.961	4.467	6.400	6.840	3.885	4.259	1.415	0.964	4.128	7.460	nan	5.404	5.092	nan	nan	1.318	1.385	0.664	nan	1.798	nan
12669	chr6	120757691	120758933	+	0	NA	exon (NM_001128151, exon 16 of 19)	exon (NM_001128151, exon 16 of 19)	-15456	NM_001081048	71803	Mm.425340	NM_001081048	ENSMUSG00000004902	Slc25a18	1500015I14Rik|AW125787	solute carrier family 25 (mitochondrial carrier), member 18	protein-coding	3.356	0.767	0.867	2.347	2.107	3.371	2.459	4.318	1.314	1.842	0.508	0.589	4.026	4.362	3.478	4.100	3.530	3.338	0.769	0.847	0.773	0.487	nan	0.234	4.045
8617	chr2	124486699	124488856	+	0	NA	intron (NM_001290997, intron 4 of 20)	intron (NM_001290997, intron 4 of 20)	-122519	NM_199238	214968	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	3.495	0.557	0.427	0.988	0.912	0.554	3.113	1.394	1.279	0.652	0.549	0.802	4.730	3.709	1.567	1.428	1.943	1.400	1.270	0.385	0.284	1.086	0.282	0.183	1.581
1864	chr10	127928519	127933048	+	0	NA	Intergenic	RLTR20B1|LTR|ERVK	32248	NM_027301	70061	Mm.158320	NM_027301	ENSMUSG00000040127	Sdr9c7	1810054F20Rik|Rdh20|Rdhs|SDR-O|Sdro	4short chain dehydrogenase/reductase family 9C, member 7	protein-coding	12.692	10.414	3.784	9.608	7.819	3.203	8.436	8.424	5.906	8.176	7.606	4.539	7.135	11.327	8.041	9.694	8.605	7.775	3.575	5.650	3.182	4.412	nan	3.503	13.074
11448	chr5	93301131	93303406	+	0	NA	Intergenic	Intergenic	34695	NM_007635	12452	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	3.543	0.695	0.311	3.923	5.287	3.236	3.038	4.451	3.398	2.757	2.402	1.485	3.160	4.627	4.325	3.631	2.507	4.083	1.502	1.456	1.110	2.548	1.717	1.132	2.904
3675	chr12	103881139	103891982	+	0	NA	Intergenic	Intergenic	18390	NM_009245	20702	Mm.439692	NM_009245	ENSMUSG00000079015	Serpina1c	Pi3|Pi6|Skalp|Spi1-3|Spi1-6|Wap3	serine (or cysteine) peptidase inhibitor, clade A, member 1C	protein-coding	5.831	4.277	1.381	nan	3.086	1.832	5.117	5.642	nan	4.887	3.797	2.778	7.183	6.857	6.665	9.146	6.734	6.902	2.247	2.374	1.658	3.072	1.897	1.514	13.446
4765	chr14	65362123	65363500	+	0	NA	intron (NM_199029, intron 1 of 9)	B2_Mm2|SINE|B2	4135	NM_199029	380912	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	4.030	1.033	0.438	2.965	1.537	1.026	3.028	3.694	3.365	3.440	0.512	0.763	3.069	4.002	4.040	4.209	1.847	6.514	0.849	nan	0.209	0.673	0.355	0.179	5.271
3491	chr12	80696786	80719236	+	0	NA	intron (NM_001177503, intron 5 of 12)	intron (NM_001177503, intron 5 of 12)	15410	NM_001177503	217682	Mm.154541	NM_001177503	ENSMUSG00000066438	Plekhd1	3830431G21Rik	pleckstrin homology domain containing, family D (with coiled-coil domains) member 1	protein-coding	7.379	2.304	1.222	4.067	4.014	2.171	6.451	4.612	5.467	5.440	3.610	1.884	7.984	nan	6.172	nan	8.199	6.786	1.182	1.620	1.150	1.524	1.039	0.732	8.332
10886	chr4	148191429	148196386	+	0	NA	Intergenic	Intergenic	33239	NM_176848	230904	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	2.012	nan	0.365	2.356	2.339	1.459	3.286	2.909	2.090	2.367	2.972	2.443	2.610	2.657	2.706	3.709	2.221	2.818	8.259	3.754	2.968	11.395	9.118	7.944	3.485
13890	chr7	148535654	148538830	+	0	NA	Intergenic	Intergenic	3222407	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	2.569	nan	0.857	nan	5.298	4.441	2.961	5.915	nan	2.407	1.161	1.960	3.111	4.061	2.430	2.727	3.053	2.443	2.320	1.666	1.855	1.826	3.546	3.078	nan
3952	chr13	34356072	34358191	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-11949	NM_001033167	73102	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	2.574	nan	0.365	3.728	2.679	2.173	2.697	2.510	3.913	3.098	1.199	0.466	5.213	4.532	4.265	5.420	3.076	3.689	0.701	0.556	0.405	1.115	0.836	0.729	3.431
7261	chr18	56843636	56850346	+	0	NA	intron (NM_177115, intron 1 of 4)	L1Md_F2|LINE|L1	78557	NM_177115	320253	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	8.112	nan	2.430	nan	4.082	2.784	7.344	7.660	5.193	5.095	6.103	4.263	nan	5.053	5.021	5.432	6.414	nan	nan	1.549	1.115	nan	1.248	0.862	5.943
9330	chr3	57439481	57443722	+	0	NA	TTS (NM_145539)	TTS (NM_145539)	16191	NM_145539	229302	Mm.26618	NM_145539	ENSMUSG00000027801	Tm4sf4	Iltmp	transmembrane 4 superfamily member 4	protein-coding	5.797	0.567	0.385	nan	6.348	5.360	9.704	4.510	6.881	6.196	5.850	4.242	10.100	8.779	5.877	6.330	6.899	8.741	0.650	0.686	0.915	0.351	0.570	0.661	5.376
10218	chr4	82183711	82186586	+	0	NA	Intergenic	Intergenic	119768	NR_040659	545641	Mm.216028	NR_040659	ENSMUSG00000085022	Gm5860	EG545641	predicted gene 5860	ncRNA	2.923	2.285	0.710	4.831	1.905	0.688	1.347	0.850	2.530	2.189	1.023	0.935	1.002	1.542	1.774	2.299	1.468	2.330	4.574	12.643	8.659	11.734	6.042	3.869	2.516
2375	chr11	69507767	69510664	+	0	NA	intron (NM_001081330, intron 12 of 85)	B2_Mm2|SINE|B2	39893	NM_001081330	327954	Mm.247478	NM_177617	ENSMUSG00000005237	Dnah2	2900022L05Rik|4930564A01|D130094J20|D330014H01Rik|Dnahc2|Dnhd3	dynein, axonemal, heavy chain 2	protein-coding	7.558	2.824	1.541	7.375	5.650	4.051	4.543	5.157	4.526	6.408	1.767	1.739	3.315	nan	4.450	6.110	4.307	5.184	1.656	4.100	4.129	3.552	3.030	3.555	7.290
24	chr1	13256621	13258523	+	0	NA	intron (NM_001302702, intron 2 of 21)	intron (NM_001302702, intron 2 of 21)	114857	NM_001302702	17978	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	5.204	5.304	2.474	3.537	2.284	0.813	1.986	1.691	2.291	2.820	1.133	1.341	2.320	3.360	2.274	3.978	3.683	3.077	1.826	1.776	1.235	1.967	1.221	0.850	2.296
12128	chr6	31270560	31272658	+	0	NA	intron (NR_040257, intron 2 of 7)	intron (NR_040257, intron 2 of 7)	51258	NR_040261	73652	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	4.105	1.916	0.791	3.699	3.338	1.275	3.930	3.046	2.982	3.543	1.066	0.839	3.573	5.071	4.044	5.099	3.977	nan	nan	2.147	1.162	2.882	1.182	0.728	3.519
2759	chr11	98949540	98951203	+	0	NA	5' UTR (NM_009024, exon 2 of 9)	5' UTR (NM_009024, exon 2 of 9)	-10100	NM_001176528	19401	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.853	nan	0.782	0.760	0.343	0.198	3.751	3.760	1.533	1.254	6.031	3.614	1.951	2.247	1.269	1.689	nan	1.129	0.473	nan	0.295	1.026	nan	nan	1.077
15634	chr9	123122292	123125816	+	0	NA	intron (NM_001081188, intron 3 of 7)	intron (NM_001081188, intron 3 of 7)	10823	NM_001081188	66446	Mm.41562	NM_001081188	ENSMUSG00000025785	Exosc7	2610002K22Rik|AV212732|mKIAA0116	exosome component 7	protein-coding	5.854	0.833	0.219	4.246	1.913	0.813	5.633	6.925	nan	7.088	5.993	3.223	6.851	6.593	6.768	7.408	3.435	7.128	5.835	1.914	1.082	4.750	3.024	2.121	12.063
8348	chr2	72570749	72573511	+	0	NA	Intergenic	Intergenic	95911	NM_025866	66953	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	1.120	1.078	0.529	0.657	0.409	0.133	0.678	0.742	0.734	0.578	4.957	1.100	0.701	0.408	0.763	1.137	0.918	0.991	0.538	0.506	0.133	0.622	0.286	0.346	1.307
3321	chr12	52964054	52967943	+	0	NA	intron (NM_198111, intron 7 of 13)	intron (NM_198111, intron 7 of 13)	266615	NM_198111	238161	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	6.468	5.628	2.248	5.356	6.335	3.124	4.598	7.679	3.858	4.614	5.217	2.656	5.177	6.815	6.323	5.224	3.740	4.275	2.950	1.351	0.855	5.131	3.476	2.541	4.822
7014	chr18	10251243	10257150	+	0	NA	Intergenic	Intergenic	-70983	NM_001083628	381157	Mm.261535	NM_001083628	ENSMUSG00000042942	Greb1l	mKIAA4095	growth regulation by estrogen in breast cancer-like	protein-coding	2.492	0.874	0.483	1.822	2.171	1.445	1.653	4.009	2.274	2.407	0.637	0.852	4.884	4.868	3.167	3.195	3.052	3.105	0.990	0.821	0.436	0.888	0.784	0.541	2.028
9169	chr3	21850765	21855100	+	0	NA	Intergenic	ID_B1|SINE|B4	-223720	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	6.376	10.904	5.956	5.631	6.047	4.734	5.433	6.027	6.001	4.376	4.701	5.318	5.316	6.118	5.753	5.686	4.830	6.328	1.781	2.106	2.018	2.498	1.473	1.126	4.253
104	chr1	36975330	36980461	+	0	NA	Intergenic	RMER5|LTR|ERV1	-38368	NM_018872	56030	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	5.759	6.309	3.330	3.645	2.406	1.556	4.634	5.165	4.340	3.862	3.113	1.931	5.202	4.788	4.964	6.593	4.319	4.944	3.152	1.847	1.438	2.446	2.645	2.145	4.308
8156	chr2	33219403	33227417	+	0	NA	intron (NM_011923, intron 1 of 4)	intron (NM_011923, intron 1 of 4)	7449	NM_011923	26360	Mm.208919	NM_011923	ENSMUSG00000004105	Angptl2	AI593246|AW260363|Arp2	angiopoietin-like 2	protein-coding	1.850	1.788	0.953	1.769	1.449	0.773	1.503	nan	1.197	nan	0.989	0.910	1.134	1.788	1.331	1.963	1.639	1.712	4.211	3.457	2.918	5.170	4.359	4.027	2.209
9415	chr3	85781644	85788007	+	0	NA	Intergenic	L1M2|LINE|L1	-38616	NM_172682	229488	Mm.119926	NM_172682	ENSMUSG00000051000	Fam160a1	9930021J17Rik	family with sequence similarity 160, member A1	protein-coding	2.667	0.798	0.754	2.573	4.842	3.856	6.749	4.017	3.312	3.019	2.520	2.553	6.371	7.240	5.941	nan	3.010	4.852	nan	0.917	0.781	0.871	1.326	1.223	3.684
8831	chr2	153338066	153342103	+	0	NA	Intergenic	Intergenic	5726	NR_040318	72326	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	nan	1.308	0.791	2.104	1.557	0.976	1.724	3.667	nan	nan	0.353	0.395	nan	nan	1.643	2.401	1.069	nan	2.825	2.543	2.511	3.522	1.739	1.276	3.562
3493	chr12	80739085	80744744	+	0	NA	Intergenic	Intergenic	18801	NM_001008423	380768	Mm.29367	NM_001008423	ENSMUSG00000062961	Ccdc177	Gm1568	coiled-coil domain containing 177	protein-coding	7.379	4.824	3.681	3.333	3.043	1.839	5.795	4.506	4.533	5.191	1.557	1.546	7.315	nan	5.544	nan	7.616	5.138	1.355	1.620	1.154	0.876	1.022	0.732	6.737
11250	chr5	55013012	55014424	+	0	NA	Intergenic	Intergenic	663726	NR_038045	330086	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13|ENSMUSG00000072936	predicted gene 10440	ncRNA	4.763	0.322	0.510	1.623	1.636	1.479	1.706	1.935	4.406	4.147	0.242	0.794	3.903	3.512	2.636	2.075	2.049	4.583	0.523	0.691	0.657	0.743	0.473	0.532	2.011
7960	chr2	10012605	10017427	+	0	NA	intron (NM_027748, intron 2 of 6)	intron (NM_027748, intron 2 of 6)	33593	NM_027748	209361	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	nan	0.642	0.504	0.795	0.475	0.328	4.486	7.091	1.989	1.699	1.277	1.447	6.207	2.059	2.924	3.912	4.115	2.934	0.543	0.339	0.475	0.397	2.471	2.228	1.075
12931	chr7	16870186	16872406	+	0	NA	TTS (NM_178900)	TTS (NM_178900)	-4021	NM_001081655	629378	Mm.491123	NM_001081655	ENSMUSG00000078794	Dact3	EG666671|naa-3	dishevelled-binding antagonist of beta-catenin 3	protein-coding	6.719	4.761	2.385	4.332	7.268	4.808	6.739	8.341	2.959	7.381	5.325	2.194	4.685	10.207	3.487	5.128	6.299	4.657	1.939	3.727	3.032	1.964	4.037	3.139	7.982
4371	chr13	105358720	105361188	+	0	NA	Intergenic	Intergenic	-66940	NM_027934	71816	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	4.544	nan	0.501	2.204	1.367	0.634	5.506	2.456	4.769	5.319	0.435	0.518	6.319	6.208	5.303	6.378	5.865	2.817	0.788	0.478	0.844	nan	0.496	0.165	5.460
2175	chr11	51890321	51892260	+	0	NA	Intergenic	Intergenic	-33809	NM_199299	76901	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	6.230	2.365	1.537	4.840	7.831	7.503	4.937	7.572	3.233	3.098	6.478	3.640	4.237	6.017	5.586	5.589	5.296	5.595	nan	1.470	0.695	nan	nan	1.206	4.106
1513	chr10	80635336	80640858	+	0	NA	exon (NM_134002, exon 4 of 11)	exon (NM_134002, exon 4 of 11)	8441	NM_001159591	103236	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	8.598	9.051	2.694	8.420	3.995	2.884	6.506	6.870	5.936	7.577	5.223	3.699	6.469	8.636	8.283	9.529	7.346	7.368	nan	3.099	3.408	6.045	3.386	3.608	11.219
1264	chr10	43440233	43451801	+	0	NA	intron (NM_001168289, intron 7 of 7)	intron (NM_001168289, intron 7 of 7)	-33123	NM_199028	331623	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	1.914	nan	0.968	1.388	0.793	0.332	1.543	2.160	1.396	1.205	1.935	1.339	1.333	1.283	1.881	1.746	1.777	1.699	nan	4.705	3.201	6.376	3.845	2.803	1.940
4905	chr14	87783091	87785526	+	0	NA	Intergenic	Intergenic	367725	NM_001253755	219249	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	5.705	0.635	0.268	2.825	1.813	1.298	2.851	2.388	2.776	6.569	0.442	0.410	2.333	6.811	4.688	4.010	nan	6.939	0.465	0.244	0.246	0.426	0.328	0.207	5.097
14367	chr8	81551991	81555180	+	0	NA	intron (NM_001297591, intron 2 of 24)	L1_Mur3|LINE|L1	211023	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	9.297	nan	1.391	8.264	9.482	7.310	15.186	10.916	4.822	10.842	9.443	6.878	8.700	9.807	9.540	11.482	12.982	8.661	6.898	8.346	10.442	10.416	8.854	13.550	14.052
12207	chr6	48666833	48675497	+	0	NA	Intergenic	B3A|SINE|B2	-4970	NM_174960	317758	Mm.116971	NM_174960	ENSMUSG00000051124	Gimap9	A630002K24|BB145400	GTPase, IMAP family member 9	protein-coding	1.032	11.578	4.502	1.655	0.564	0.196	0.830	1.013	0.815	0.758	0.246	0.413	0.432	0.433	1.218	1.080	0.674	nan	nan	1.156	0.487	0.669	0.303	0.182	0.763
47	chr1	20880106	20883700	+	0	NA	Intergenic	Intergenic	8570	NR_040492	77741	Mm.159984	NR_040492	ENSMUSG00000097934	6720483E21Rik	-	RIKEN cDNA 6720483E21 gene	ncRNA	6.737	2.989	1.051	5.373	3.949	2.186	6.194	3.636	3.677	5.329	1.432	2.410	5.535	7.678	7.226	9.394	5.627	5.313	1.055	1.418	1.047	1.600	1.014	1.111	7.678
10819	chr4	141091909	141097273	+	0	NA	intron (NM_177867, intron 4 of 14)	MIRc|SINE|MIR	6246	NM_177867	329972	Mm.247201	NM_177867	ENSMUSG00000045004	Spata21	4933414G08	spermatogenesis associated 21	protein-coding	6.672	6.081	2.236	8.061	3.932	2.092	5.611	6.898	nan	9.774	4.747	3.490	6.382	8.229	6.827	8.235	4.209	nan	5.877	2.003	2.872	7.444	nan	3.780	10.538
5332	chr15	75422884	75425593	+	0	NA	Intergenic	Intergenic	7591	NR_108041	105892	Mm.38909	NM_001039720	ENSMUSG00000053168	9030619P08Rik	-	lymphocyte antigen 6 complex pseudogene	pseudo	3.230	nan	0.186	5.813	1.668	0.408	nan	1.421	1.659	nan	nan	0.470	0.933	2.304	1.711	2.326	nan	2.928	0.789	0.575	0.181	nan	0.454	0.277	2.857
3619	chr12	93081985	93087608	+	0	NA	Intergenic	Intergenic	360027	NR_126436	75295	Mm.243878	NR_126436		4930559C10Rik	-	RIKEN cDNA 4930559C10 gene	ncRNA	8.125	3.053	1.188	4.170	3.345	1.599	4.920	5.636	5.000	5.648	2.650	2.661	8.131	5.818	7.113	9.017	7.984	7.132	2.892	1.598	1.214	2.656	1.493	1.297	9.806
10331	chr4	102885911	102889151	+	0	NA	intron (NM_001285862, intron 6 of 19)	intron (NM_001285862, intron 6 of 19)	-98848	NM_001163767	67344	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	6.392	9.815	3.667	8.275	6.206	5.866	9.197	7.884	5.946	13.740	6.446	5.884	6.242	9.049	6.618	8.333	5.230	7.606	4.700	3.478	7.253	6.509	3.292	6.840	12.710
6296	chr17	5057294	5059867	+	0	NA	intron (NM_001085355, intron 2 of 19)	intron (NM_001085355, intron 2 of 19)	63506	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	2.888	2.568	0.811	3.963	2.391	1.101	3.532	1.934	2.533	2.712	1.944	1.259	2.640	3.406	2.886	3.960	2.497	3.226	2.774	1.387	1.238	1.921	1.434	1.025	3.793
11702	chr5	124120180	124123719	+	0	NA	exon (NM_001289472, exon 23 of 25)	exon (NM_001289472, exon 23 of 25)	5841	NM_144509	65105	Mm.29430	NM_144509	ENSMUSG00000029404	Arl6ip4	AA408210|AA408365|Aip-4|Srp25	ADP-ribosylation factor-like 6 interacting protein 4	protein-coding	4.327	2.455	1.222	6.349	3.323	2.672	3.864	4.949	3.643	nan	2.455	1.881	4.211	4.886	nan	5.131	nan	nan	nan	1.941	1.973	3.985	nan	2.252	nan
14545	chr8	108328847	108330633	+	0	NA	Intergenic	Intergenic	254937	NR_077224	109215	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	3.374	1.956	1.979	2.709	4.091	2.928	1.472	3.037	4.319	3.246	1.707	2.067	2.126	3.842	2.325	2.514	3.450	4.778	0.404	0.973	1.372	nan	0.793	0.799	2.620
538	chr1	127362371	127366193	+	0	NA	intron (NM_145128, intron 4 of 17)	B4|SINE|B4	159296	NM_145128	107895	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	3.709	9.195	7.394	2.106	1.664	0.968	1.622	1.619	2.326	1.821	1.452	0.886	1.052	1.877	1.668	2.039	2.618	nan	nan	2.127	2.456	0.537	0.959	0.907	1.354
10637	chr4	132639822	132651870	+	0	NA	intron (NM_211357, intron 1 of 14)	B2_Mm2|SINE|B2	6800	NM_010166	14050	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	3.913	3.019	1.200	5.159	2.990	1.990	4.885	4.184	2.403	3.174	4.264	2.224	2.599	4.539	nan	3.092	1.668	3.214	6.304	7.820	5.787	8.553	7.816	5.747	3.876
5897	chr16	21991644	22003147	+	0	NA	Intergenic	Intergenic	-1853	NM_001289581	239759	Mm.33192	NM_153404	ENSMUSG00000044626	Liph	C130037N08Rik|D16Wsu119e|H06|Lpdlr|P3|PLA1B|lpd1|lpd2|mPA-PLA1	lipase, member H	protein-coding	8.683	0.756	0.830	4.061	6.585	4.742	7.693	9.653	5.574	nan	4.351	2.605	9.947	10.931	6.483	nan	7.920	8.110	2.718	1.778	1.347	1.777	3.610	3.357	6.472
15023	chr9	44541021	44543674	+	0	NA	Intergenic	Intergenic	-15926	NM_007551	12145	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	5.144	3.859	1.504	6.329	2.645	1.255	2.133	1.765	1.615	4.679	1.807	1.004	1.279	3.352	nan	2.367	1.093	3.080	1.344	1.596	1.368	nan	1.509	1.268	4.812
8664	chr2	130003500	130005547	+	0	NA	Intergenic	PB1D9|SINE|Alu	-7817	NM_009374	21818	Mm.2961	NM_009374	ENSMUSG00000027401	Tgm3	AI893889|TG E|TG(E)|TGE|TGase E|TGase-3|we	transglutaminase 3, E polypeptide	protein-coding	9.639	13.939	4.556	11.229	4.447	3.083	7.945	9.821	6.459	11.894	7.877	4.922	9.066	7.484	9.882	13.179	8.951	11.209	7.492	3.660	4.102	7.825	5.126	4.310	16.809
4711	chr14	57701613	57705752	+	0	NA	intron (NM_015771, intron 2 of 7)	L2b|LINE|L2	30736	NM_153382	50523	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	6.409	nan	0.280	2.575	2.513	1.159	7.799	9.128	3.604	4.584	4.638	2.507	7.828	8.295	6.952	8.221	4.757	5.286	1.128	0.435	0.378	0.476	0.492	0.298	9.221
14362	chr8	79961006	79962829	+	0	NA	Intergenic	Intergenic	96091	NM_020259	15245	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	3.875	nan	0.902	2.975	4.767	1.076	2.738	4.392	nan	2.293	0.642	1.120	6.058	5.990	4.497	6.699	5.144	2.394	0.966	1.006	0.303	1.236	0.671	0.198	3.078
521	chr1	121346855	121348346	+	0	NA	Intergenic	Lx8|LINE|L1	-15011	NM_178082	72999	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	1.646	0.818	0.631	0.941	1.312	0.929	3.886	1.943	1.494	1.409	3.661	0.742	2.996	4.435	2.307	3.723	4.190	1.208	0.766	0.604	1.133	0.558	0.424	0.519	2.752
13314	chr7	80675325	80687751	+	0	NA	intron (NM_173863, intron 1 of 14)	intron (NM_173863, intron 1 of 14)	7339	NM_173863	70461	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	11.610	7.737	4.276	9.445	8.829	5.076	7.788	12.257	9.762	9.548	8.400	6.526	12.681	13.023	9.847	9.356	10.868	11.904	6.453	4.090	2.404	4.325	4.072	2.723	nan
9976	chr4	35043041	35048113	+	0	NA	intron (NM_178061, intron 2 of 3)	L1Md_T|LINE|L1	-106478	NM_199157	387510	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	6.660	1.403	1.019	5.121	4.329	2.366	3.575	6.675	4.410	6.973	1.656	1.743	3.921	5.638	5.386	5.911	3.776	4.975	2.262	1.787	1.634	2.993	1.796	1.464	5.612
6353	chr17	15204353	15205741	+	0	NA	Intergenic	Intergenic	35736	NR_046164	328747	Mm.256835	NR_046164	ENSMUSG00000097624	Gm5091	C330048F19	predicted gene 5091	ncRNA	3.634	1.045	0.414	2.084	1.479	0.797	4.819	5.009	2.541	3.344	2.020	1.424	2.567	3.968	4.306	3.789	1.843	3.237	1.322	0.992	0.285	2.010	1.712	0.870	5.149
15462	chr9	106182497	106184035	+	0	NA	intron (NM_029896, intron 3 of 8)	L1M5|LINE|L1	4426	NR_029526	387249		NR_029526	ENSMUSG00000065440	Mirlet7g	Mirnlet7g|let-7g|mmu-let-7g	microRNA let7g	ncRNA	5.061	9.616	4.132	6.240	1.654	0.903	3.492	3.940	nan	4.256	6.290	3.566	5.334	5.017	4.785	6.122	4.535	4.644	3.436	1.188	1.016	3.626	2.019	1.594	8.127
2164	chr11	51453835	51455307	+	0	NA	intron (NM_153393, intron 2 of 28)	intron (NM_153393, intron 2 of 28)	-130186	NM_028398	72947	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	3.989	1.332	0.450	3.715	1.697	1.099	4.019	4.408	2.923	3.065	4.306	0.911	3.480	4.727	5.394	6.571	2.690	4.561	nan	2.058	1.940	4.973	nan	1.375	5.905
1912	chr11	4160780	4168531	+	0	NA	intron (NM_026175, intron 2 of 15)	intron (NM_026175, intron 2 of 15)	4301	NM_026175	67465	Mm.156914	NM_026175	ENSMUSG00000002129	Sf3a1	1200014H24Rik|5930416L09Rik|AI159724	splicing factor 3a, subunit 1	protein-coding	6.713	2.133	0.634	3.443	1.770	0.679	8.774	8.359	3.467	6.734	5.186	3.897	7.141	7.047	7.282	9.171	4.460	5.141	1.570	nan	0.762	1.408	1.371	1.395	7.905
3293	chr12	36766218	36770393	+	0	NA	Intergenic	Lx5c|LINE|L1	-47900	NR_039558	100628578		NR_039558	ENSMUSG00000092998	Mir5099	mmu-mir-5099|mu-mir-5099	microRNA 5099	ncRNA	4.761	7.132	2.511	5.674	1.864	1.026	2.969	3.796	nan	3.662	2.131	1.947	2.523	2.290	4.447	4.272	4.201	4.800	nan	4.080	3.141	4.481	4.939	3.956	5.344
986	chr1	184883564	184890384	+	0	NA	Intergenic	Intergenic	-3938	NM_178692	226777	Mm.169542	NM_178692	ENSMUSG00000039349	C130074G19Rik	-	RIKEN cDNA C130074G19 gene	protein-coding	8.925	1.818	0.849	3.937	1.839	1.026	4.268	7.994	2.334	2.448	3.442	1.436	8.462	7.260	6.725	10.758	7.980	4.792	1.644	0.933	0.649	1.227	1.400	0.928	8.779
786	chr1	161160888	161164424	+	0	NA	intron (NM_028664, intron 4 of 6)	B3|SINE|B2	-3342	NM_001195189	100502590	Mm.449990	NM_001195189		4930469G21Rik	-	RIKEN cDNA 4930469G21 gene	protein-coding	8.128	5.620	2.780	5.758	4.156	2.306	4.872	4.657	nan	5.001	3.519	3.130	5.772	5.950	5.484	nan	6.124	5.738	nan	3.347	2.612	3.748	nan	2.844	6.643
4148	chr13	54481686	54493130	+	0	NA	Intergenic	B3|SINE|B2	-16397	NM_176987	319719	Mm.376151	NM_176987	ENSMUSG00000043183	Simc1	4732471D19Rik	SUMO-interacting motifs containing 1	protein-coding	nan	1.178	0.602	0.379	0.151	0.129	0.442	0.471	0.309	0.360	0.154	0.096	0.284	nan	0.543	nan	0.287	nan	5.641	3.465	2.375	6.142	4.307	3.532	nan
4082	chr13	47061800	47063704	+	0	NA	intron (NM_172262, intron 8 of 20)	RSINE1|SINE|B4	19253	NM_172262	218214	Mm.31259	NM_172262	ENSMUSG00000038080	Kdm1b	4632428N09Rik|AI482520|Aof1	lysine (K)-specific demethylase 1B	protein-coding	3.082	0.595	0.268	nan	1.298	0.713	1.313	1.242	2.276	1.673	2.706	0.956	1.667	1.447	1.935	3.326	2.176	3.061	0.439	nan	0.257	0.537	0.318	0.249	4.313
201	chr1	58126583	58130219	+	0	NA	intron (NM_023617, intron 7 of 34)	intron (NM_023617, intron 7 of 34)	15265	NM_023617	71724	Mm.20108	NM_023617	ENSMUSG00000064294	Aox3	1200011D03Rik|AI326299|Aoh1|Aoh2	aldehyde oxidase 3	protein-coding	4.227	0.619	0.285	3.086	1.646	0.993	4.171	2.759	5.158	6.925	1.367	0.634	6.892	6.040	5.578	10.184	5.868	5.997	0.431	0.520	0.279	0.682	0.448	0.080	7.129
6742	chr17	56144228	56150230	+	0	NA	Intergenic	ID_B1|SINE|B4	-6886	NM_001130456	20359	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	5.904	nan	1.646	6.121	3.733	2.972	7.210	5.702	3.961	4.996	3.594	2.724	4.767	7.071	7.620	9.000	6.513	5.621	3.601	2.436	2.467	4.053	3.190	3.151	9.663
14895	chr9	21217568	21221163	+	0	NA	intron (NR_106127, intron 1 of 3)	B1_Mus2|SINE|Alu	6916	NR_106127	102465769		NR_106127	ENSMUSG00000098764	Mir7667	Gm27756|mmu-mir-7667	microRNA 7667	ncRNA	0.943	0.777	0.804	0.658	0.663	0.366	0.492	2.811	2.129	1.524	1.054	2.457	1.149	0.774	0.707	0.870	0.653	0.925	5.505	3.141	2.114	3.299	5.796	6.405	0.846
14717	chr8	124489156	124491434	+	0	NA	Intergenic	Intergenic	-30472	NM_029746	76332	Mm.240108	NM_029746	ENSMUSG00000031979	Cog2	1190002B08Rik|2700012E02Rik|C86089|Ldlc	component of oligomeric golgi complex 2	protein-coding	1.373	nan	0.666	nan	1.046	0.915	nan	nan	0.811	0.761	0.626	0.726	0.721	1.000	nan	1.420	1.518	nan	2.679	3.961	3.525	6.522	3.467	nan	nan
11474	chr5	99371489	99373641	+	0	NA	intron (NR_030692, intron 3 of 3)	intron (NR_030692, intron 3 of 3)	-119638	NM_145839	320292	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.710	0.459	0.204	0.398	0.555	0.328	0.771	1.032	0.733	0.599	5.462	2.915	0.854	1.918	0.696	0.516	0.413	0.713	0.514	0.404	0.228	0.292	0.744	0.253	0.353
719	chr1	140824682	140827621	+	0	NA	Intergenic	RMER13B|LTR|ERVK	-169749	NR_040604	75910	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA	10.550	1.078	0.867	nan	5.329	3.203	8.786	5.501	3.248	3.412	4.740	2.445	5.956	6.087	5.966	7.019	5.191	5.189	1.541	1.406	0.630	1.552	1.597	1.132	nan
4645	chr14	47917403	47919693	+	0	NA	intron (NR_045959, intron 2 of 3)	L1ME1|LINE|L1	19684	NR_045959	73961	Mm.390702	NR_045959		4930447J18Rik	4930425M13Rik	RIKEN cDNA 4930447J18 gene	ncRNA	7.174	11.694	3.239	7.209	4.547	2.582	5.598	7.835	4.624	7.665	4.898	4.106	5.566	7.224	8.368	8.446	3.825	7.609	4.661	2.107	1.896	5.482	2.059	3.005	11.192
1529	chr10	80985838	80988365	+	0	NA	intron (NM_001038655, intron 2 of 3)	intron (NM_001038655, intron 2 of 3)	14264	NM_001038655	14708	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	4.986	5.195	1.028	5.339	0.812	0.509	1.933	2.709	2.421	3.262	8.946	3.666	2.350	2.726	nan	4.261	1.667	4.403	nan	1.107	0.719	1.641	0.757	0.517	7.352
9273	chr3	51025744	51030382	+	0	NA	Intergenic	Intergenic	-196384	NM_009834	12457	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	6.728	6.183	2.744	4.803	8.065	7.035	6.251	5.006	3.758	8.405	2.052	3.495	4.915	6.980	4.893	4.888	3.978	5.138	4.360	2.874	3.533	5.432	3.632	4.378	8.225
7451	chr19	3332952	3337242	+	0	NA	intron (NM_013495, intron 1 of 18)	intron (NM_013495, intron 1 of 18)	11796	NM_013495	12894	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	2.071	3.960	1.331	3.284	1.592	0.961	2.364	5.531	nan	2.339	1.536	2.142	1.573	2.375	2.601	3.008	1.651	2.585	1.021	0.907	0.779	3.385	1.024	0.882	2.605
13303	chr7	75892559	75895222	+	0	NA	Intergenic	RLTR13D2|LTR|ERVK	45552	NM_029652	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	6.631	4.829	1.292	nan	1.361	0.646	5.548	7.348	3.008	6.311	7.021	2.913	6.295	6.689	7.451	8.046	4.097	7.009	3.245	1.062	1.175	3.292	1.454	1.679	8.643
11874	chr5	139727592	139735953	+	0	NA	intron (NM_174850, intron 1 of 16)	B1F|SINE|Alu	4561	NM_174850	231830	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	8.006	4.797	2.132	7.286	3.909	2.961	10.041	8.731	6.055	6.988	3.524	2.652	8.411	10.921	9.977	11.121	8.469	8.634	5.400	3.118	2.905	6.593	nan	5.258	9.327
10796	chr4	139151692	139159186	+	0	NA	Intergenic	B4A|SINE|B4	-24326	NM_001163006	433771	Mm.305990	NM_001163006	ENSMUSG00000050608	Minos1	2310028O11Rik	mitochondrial inner membrane organizing system 1	protein-coding	4.074	3.818	0.990	5.813	2.813	1.929	4.232	3.867	nan	2.877	4.907	2.693	2.697	4.867	3.692	4.400	2.142	nan	1.013	0.754	0.736	1.225	nan	0.489	6.308
1353	chr10	62004635	62007232	+	0	NA	Intergenic	Intergenic	-26825	NM_007731	12817	Mm.300931	NM_007731	ENSMUSG00000058806	Col13a1	-	collagen, type XIII, alpha 1	protein-coding	4.482	13.792	6.893	3.116	2.576	1.680	1.076	1.404	1.914	2.302	2.783	1.082	0.720	2.137	1.366	1.726	1.583	1.903	nan	2.140	2.350	0.639	0.685	0.767	nan
1742	chr10	114682502	114684062	+	0	NA	intron (NM_146241, intron 3 of 18)	(TAGA)n|Simple_repeat|Simple_repeat	118088	NM_146241	237553	Mm.445550	NM_146241	ENSMUSG00000050663	Trhde	9330155P21Rik	TRH-degrading enzyme	protein-coding	4.047	1.141	0.730	1.720	3.056	1.639	1.645	2.488	2.357	2.807	0.888	1.222	1.800	4.266	3.715	3.619	3.442	3.685	0.516	0.700	0.282	0.373	0.815	0.570	2.418
12051	chr6	8897865	8900673	+	0	NA	Intergenic	Intergenic	-50750	NM_008751	18231	Mm.46954	NM_008751	ENSMUSG00000046178	Nxph1	C130005L03Rik	neurexophilin 1	protein-coding	0.287	0.555	0.173	0.323	0.124	0.045	0.536	0.458	0.122	0.192	0.178	0.068	0.086	0.262	0.229	nan	0.558	0.197	4.024	4.599	3.023	6.940	5.454	4.455	nan
11610	chr5	115969878	115976935	+	0	NA	intron (NM_007708, intron 26 of 46)	B1_Mus1|SINE|Alu	51022	NM_031869	19079	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	5.343	4.409	1.961	7.336	4.578	2.550	6.523	6.018	3.066	4.464	5.209	2.749	4.419	9.205	5.649	5.277	3.360	4.857	nan	nan	1.482	1.279	nan	2.641	6.799
10025	chr4	44077959	44086803	+	0	NA	intron (NM_015828, intron 1 of 11)	intron (NM_015828, intron 1 of 11)	1796	NM_015828	50798	Mm.256718	NM_015828	ENSMUSG00000028479	Gne	2310066H07Rik|DMRV|GLCNE|IBM2|NM|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding	5.852	nan	1.685	5.514	3.577	2.248	5.053	8.172	4.697	5.605	3.929	3.760	6.258	7.129	6.410	8.174	5.998	nan	6.943	3.764	2.882	nan	4.119	3.466	6.847
2585	chr11	86671752	86676451	+	0	NA	intron (NM_029478, intron 1 of 11)	intron (NM_029478, intron 1 of 11)	9721	NM_029478	75909	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	2.598	0.603	0.535	nan	3.170	1.893	4.040	4.401	3.118	3.074	2.959	5.977	2.896	3.862	3.968	3.222	1.918	3.266	3.431	1.929	1.586	2.495	5.167	4.366	nan
4404	chr13	111008633	111011391	+	0	NA	Intergenic	L1_Mus1|LINE|L1	-106166	NR_131194	102636142	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	nan	nan	0.656	1.590	4.316	2.501	2.133	2.204	nan	nan	0.760	0.469	2.624	4.322	3.481	2.461	1.750	nan	1.249	1.316	0.929	nan	1.081	0.792	1.473
14848	chr9	7867567	7874533	+	0	NA	intron (NM_007464, intron 1 of 8)	intron (NM_007464, intron 1 of 8)	2120	NM_007464	11796	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	nan	nan	6.978	11.363	7.890	6.769	4.254	nan	7.603	9.121	5.041	3.561	5.133	8.124	5.827	nan	nan	nan	nan	2.895	3.501	1.686	2.823	2.851	nan
14773	chr8	127088219	127097019	+	0	NA	intron (NM_001309391, intron 1 of 24)	intron (NM_001309391, intron 1 of 24)	28563	NM_001309391	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	1.459	nan	0.250	nan	0.240	0.111	nan	7.814	1.373	1.807	0.249	0.262	2.672	1.381	nan	4.642	4.315	nan	nan	2.997	1.939	nan	1.894	nan	nan
4864	chr14	76917848	76921102	+	0	NA	Intergenic	Lx8|LINE|L1	117142	NM_172488	210808	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase (multicopper oxidoreductase) domain containing 1	protein-coding	1.469	0.511	0.368	1.012	2.299	0.709	2.527	3.222	1.913	1.912	0.910	0.846	2.306	3.351	2.577	3.026	1.578	2.119	0.776	0.551	0.438	0.791	0.665	0.520	2.837
6671	chr17	46338529	46340658	+	0	NA	Intergenic	Intergenic	-11570	NM_170680	224814	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	6.098	13.421	4.262	7.308	3.013	1.213	6.861	5.432	3.868	5.065	4.935	3.079	4.789	nan	7.258	8.619	5.889	6.748	6.010	4.317	1.617	6.357	4.356	3.281	10.626
6773	chr17	63494211	63496574	+	0	NA	intron (NM_015794, intron 1 of 8)	L1M4|LINE|L1	5188	NM_015794	50758	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	3.047	0.753	0.805	0.872	0.700	0.258	2.351	2.626	nan	1.253	0.386	0.423	3.290	4.281	4.550	3.194	2.416	2.688	1.119	0.336	0.380	1.001	0.534	0.460	3.551
6562	chr17	34332085	34339016	+	0	NA	intron (NM_001033978, intron 3 of 4)	intron (NM_001033978, intron 3 of 4)	9095	NM_010381	100504404	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	nan	16.999	6.215	4.488	2.361	1.127	2.880	2.767	2.058	2.964	1.330	0.914	1.966	2.831	2.881	4.636	3.127	2.994	3.295	2.201	1.557	2.838	2.048	1.524	6.520
7716	chr19	34283019	34289938	+	0	NA	Intergenic	B4A|SINE|B4	-4181	NM_007987	14102	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	nan	1.184	0.663	1.838	2.710	1.818	10.622	9.304	3.515	3.462	1.879	1.755	5.359	9.106	7.413	7.213	8.000	2.284	0.351	0.505	0.367	0.302	0.284	0.301	2.267
11086	chr5	28394737	28399686	+	0	NA	intron (NM_028234, intron 15 of 18)	URR1B|DNA|hAT-Charlie	-69773	NR_015562	654796	Mm.57202	NR_015562	ENSMUSG00000097726	9530036O11Rik	-	RIKEN cDNA 9530036O11Rik	ncRNA	2.920	3.984	1.156	nan	1.452	0.870	2.931	4.031	2.588	4.474	1.525	1.781	3.190	5.713	6.272	6.425	2.557	4.766	5.210	1.907	1.313	4.036	3.262	3.175	6.460
12047	chr6	8715008	8718478	+	0	NA	intron (NM_001252266, intron 5 of 11)	intron (NM_001252266, intron 5 of 11)	41715	NM_001252266	15893	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	4.056	0.746	0.411	2.007	1.827	1.558	2.670	5.407	2.973	2.718	0.245	0.679	5.578	5.492	4.133	6.730	8.283	4.718	1.182	0.880	0.669	1.141	1.422	1.511	2.984
97	chr1	36625513	36628434	+	0	NA	intron (NM_001126046, intron 6 of 14)	ORR1A3|LTR|ERVL-MaLR	-33641	NM_027957	381337	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	3.963	3.490	1.174	7.948	2.956	1.745	2.157	2.157	2.209	2.476	5.173	2.034	2.121	3.404	2.483	4.120	2.464	3.246	1.979	1.551	1.726	3.410	0.880	0.808	3.767
10293	chr4	97534767	97537647	+	0	NA	Intergenic	Intergenic	-45736	NM_001122952	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	9.258	nan	0.346	7.620	4.599	2.048	7.470	8.020	7.251	8.300	5.281	4.245	9.732	9.701	9.111	10.266	5.749	10.696	3.150	1.979	1.011	nan	0.846	0.561	9.631
3645	chr12	102245555	102250293	+	0	NA	intron (NM_172152, intron 12 of 16)	MIR|SINE|MIR	-35150	NM_177620	217835	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	3.820	13.493	7.744	2.540	2.072	1.335	3.062	2.145	2.392	2.694	1.989	2.252	2.587	2.630	2.671	3.569	5.269	2.093	1.386	1.979	2.055	2.077	0.815	0.832	5.427
7776	chr19	42054691	42058921	+	0	NA	intron (NM_026152, intron 1 of 6)	intron (NM_026152, intron 1 of 6)	4578	NM_025752	66765	Mm.440412	NM_025752	ENSMUSG00000090369	4933411K16Rik	-	RIKEN cDNA 4933411K16 gene	protein-coding	6.435	6.031	1.486	7.377	2.925	2.049	5.498	7.571	3.961	9.720	7.572	3.517	4.207	6.584	6.175	7.712	5.345	5.872	1.846	1.633	1.422	3.718	2.258	2.315	12.097
13984	chr8	10923492	10925916	+	0	NA	non-coding (NR_030715, exon 3 of 3)	non-coding (NR_030715, exon 3 of 3)	3753	NR_030715	665306	Mm.358758	NR_030715	ENSMUSG00000038917	3930402G23Rik	-	RIKEN cDNA 3930402G23 gene	ncRNA	7.054	6.048	3.508	5.198	5.342	2.337	6.961	6.784	4.396	6.109	1.726	1.692	8.070	5.441	7.165	9.740	10.194	4.167	0.821	1.522	1.665	4.045	1.076	0.744	7.702
8260	chr2	58678624	58684190	+	0	NA	intron (NM_001289660, intron 1 of 7)	intron (NM_001289660, intron 1 of 7)	-73777	NM_001289659	76654	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	6.809	0.646	0.438	3.201	2.553	1.163	5.693	4.527	4.932	5.428	4.424	1.871	7.714	5.790	6.413	7.857	7.689	6.011	1.078	0.769	0.620	0.975	1.253	0.557	6.521
12403	chr6	87208578	87210292	+	0	NA	intron (NM_054041, intron 13 of 17)	MTD|LTR|ERVL-MaLR	104689	NM_001167937	52372	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	4.113	0.741	0.449	2.616	2.729	0.578	6.519	6.165	2.964	2.904	6.655	4.347	4.147	4.186	4.461	7.592	3.399	4.886	nan	1.832	0.888	3.055	1.543	1.259	3.836
9474	chr3	89576692	89580185	+	0	NA	intron (NM_080466, intron 2 of 7)	intron (NM_080466, intron 2 of 7)	58274	NM_080466	140493	Mm.120250	NM_080466	ENSMUSG00000000794	Kcnn3	KCa2.3|SK3|SKCA3	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	protein-coding	7.157	11.082	3.045	8.543	3.942	2.830	6.613	5.572	3.796	10.094	4.883	3.063	6.518	8.385	6.687	9.043	4.924	8.962	nan	2.173	2.597	5.249	2.986	2.890	12.471
774	chr1	158421235	158422359	+	0	NA	intron (NM_007495, intron 1 of 22)	intron (NM_007495, intron 1 of 22)	59493	NM_001205204	11899	Mm.329586	NM_007495	ENSMUSG00000026587	Astn1	Astn|GC14|mKIAA0289	astrotactin 1	protein-coding	4.821	0.445	0.693	0.941	0.912	0.489	2.179	2.320	nan	1.477	0.376	0.267	4.108	4.256	4.587	6.020	4.996	2.028	nan	0.646	0.327	0.732	nan	0.007	4.463
5101	chr15	34166950	34169158	+	0	NA	Intergenic	(TTTTG)n|Simple_repeat|Simple_repeat	-69972	NM_033521	114128	Mm.197518	NM_033521	ENSMUSG00000022257	Laptm4b	C330023P13Rik|LAPTM4beta	lysosomal-associated protein transmembrane 4B	protein-coding	5.668	3.533	0.856	6.722	3.310	2.270	6.879	10.023	4.352	7.786	4.151	3.170	8.045	8.440	9.304	8.018	5.923	8.318	2.972	1.120	1.669	3.201	2.106	2.479	10.168
5602	chr15	96858602	96860199	+	0	NA	Intergenic	Intergenic	-159702	NM_175121	67760	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	2.397	0.404	0.177	2.510	2.881	0.921	4.170	3.435	4.807	7.645	0.455	0.669	8.148	4.844	4.420	3.517	3.701	3.460	0.597	0.690	0.153	0.707	0.160	0.390	2.003
4306	chr13	97472421	97473275	+	0	NA	intron (NR_110432, intron 1 of 1)	intron (NR_110432, intron 1 of 1)	-9853	NR_110430	100039691	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	ENSMUSG00000078952|Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	3.243	0.614	0.122	2.934	1.340	0.788	2.786	2.171	2.907	4.212	0.476	0.466	3.477	4.702	4.802	6.266	2.784	4.407	1.104	0.515	0.132	0.856	1.036	0.849	3.560
6224	chr16	93013235	93014863	+	0	NA	Intergenic	Intergenic	-187975	NM_001111022	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	3.268	0.912	0.326	0.882	1.621	0.380	1.717	3.881	nan	1.831	4.937	0.873	3.047	4.356	4.160	3.383	1.071	2.792	nan	0.645	0.301	2.028	0.896	0.561	3.747
15625	chr9	122229350	122231856	+	0	NA	intron (NM_001271873, intron 11 of 12)	intron (NM_001271873, intron 11 of 12)	43425	NR_106185	102465896		NR_106185	ENSMUSG00000098922	Mir8106	Gm27594|mmu-mir-8106	microRNA 8106	ncRNA	2.964	0.468	0.309	1.879	0.991	0.925	3.669	3.668	2.519	3.367	1.533	0.757	3.891	5.799	5.284	6.706	3.808	3.897	0.702	0.826	1.006	1.393	nan	0.808	5.422
10810	chr4	140689855	140697014	+	0	NA	Intergenic	Intergenic	-8039	NM_173867	108911	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	nan	8.530	3.786	4.920	3.583	3.262	6.754	5.436	nan	4.300	2.887	3.275	4.948	7.686	6.349	6.477	4.034	5.297	2.088	1.766	1.977	3.023	nan	2.010	6.728
1341	chr10	60842559	60846907	+	0	NA	Intergenic	MLTR11A|LTR|ERVK	-13152	NM_029770	107449	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	5.529	3.157	0.633	7.606	1.484	0.746	3.170	2.135	2.705	4.050	1.252	1.258	1.997	3.125	3.607	4.764	1.847	4.945	4.157	1.603	1.625	5.300	1.995	2.093	7.841
2684	chr11	95315964	95317618	+	0	NA	Intergenic	Intergenic	-6545	NM_001195003	217127	Mm.90213	NM_177619	ENSMUSG00000038909	Kat7	Hbo1|Hboa|Myst2	K(lysine) acetyltransferase 7	protein-coding	5.562	nan	1.492	3.108	6.505	5.268	4.620	4.713	4.173	4.121	2.698	2.462	4.826	5.039	3.353	3.701	5.106	4.422	1.172	nan	1.455	0.653	nan	nan	2.665
4123	chr13	51826772	51850065	+	0	NA	Intergenic	Intergenic	-8257	NM_011817	23882	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	nan	15.340	6.995	nan	1.135	0.754	0.791	1.317	1.225	1.382	3.723	0.940	0.704	0.939	1.151	1.339	0.881	nan	1.046	nan	1.295	1.496	0.886	0.580	nan
5098	chr15	32172541	32174801	+	0	NA	Intergenic	B4|SINE|B4	-3618	NM_020503	57254	Mm.377133	NM_020503	ENSMUSG00000045267	Tas2r119	T2r19|Tas2r19|mGR19|mt2r19	taste receptor, type 2, member 119	protein-coding	5.315	2.219	0.624	4.121	0.755	0.425	6.500	11.093	3.694	3.443	2.709	1.604	11.052	6.135	8.424	8.434	5.736	8.727	1.515	0.417	0.258	1.460	0.918	0.306	5.234
12082	chr6	22282108	22285803	+	0	NA	Intergenic	Intergenic	-4272	NM_053116	93735	Mm.137403	NM_053116	ENSMUSG00000029671	Wnt16	E130309I19Rik	wingless-type MMTV integration site family, member 16	protein-coding	1.998	nan	1.255	0.879	1.265	0.768	4.290	4.627	nan	1.213	0.855	1.170	3.053	2.289	2.949	3.029	3.029	2.512	2.353	1.344	0.772	1.218	1.875	1.575	1.060
6929	chr17	85037140	85038713	+	0	NA	intron (NM_009205, intron 4 of 9)	intron (NM_009205, intron 4 of 9)	9579	NM_009205	20532	Mm.227176	NM_009205	ENSMUSG00000024131	Slc3a1	D2H|NBAT|NTAA|RBAT	solute carrier family 3, member 1	protein-coding	3.073	0.981	0.168	2.774	2.017	1.295	3.596	2.236	nan	2.907	0.833	0.567	3.402	4.492	3.352	5.522	4.946	4.255	0.704	1.067	0.278	0.515	0.777	0.728	3.767
14044	chr8	13528802	13531630	+	0	NA	Intergenic	Intergenic	32245	NM_025601	66501	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	4.815	2.329	0.392	6.722	1.126	0.302	2.918	6.751	3.812	5.438	1.477	1.100	5.727	6.125	6.756	9.209	2.714	8.319	3.377	0.636	0.842	5.640	1.152	0.788	11.532
8653	chr2	128369163	128371781	+	0	NA	intron (NR_028589, intron 1 of 2)	intron (NR_028589, intron 1 of 2)	58879	NR_028591	100043424	Mm.297222	NR_028589		Gm14005	OTTMUSG00000015351	predicted gene 14005	ncRNA	4.116	1.245	0.513	3.584	1.804	1.222	4.589	4.247	4.322	5.132	5.298	2.695	5.702	6.705	3.813	3.524	2.209	6.045	nan	0.426	0.202	0.943	0.431	0.304	5.469
3424	chr12	74198567	74200637	+	0	NA	intron (NM_172804, intron 2 of 6)	L1MA5|LINE|L1	-84674	NR_030734	74284	Mm.287421	NR_030733	ENSMUSG00000071265	1700086L19Rik	1700006L05Rik|AU016007	RIKEN cDNA 1700086L19 gene	ncRNA	6.446	0.589	0.378	1.775	0.981	0.126	3.316	2.834	2.210	2.763	2.510	0.628	9.709	nan	2.410	3.481	7.047	2.243	2.817	2.674	2.606	2.699	2.508	1.901	3.879
4799	chr14	67665934	67668272	+	0	NA	Intergenic	Intergenic	48507	NM_001110162	108912	Mm.33831	NM_175384	ENSMUSG00000048922	Cdca2	2610311M19Rik|AI586158	cell division cycle associated 2	protein-coding	2.539	3.313	2.661	3.339	3.371	2.785	1.671	4.189	3.196	2.838	2.118	1.977	2.265	2.898	3.764	3.234	2.218	4.184	2.321	nan	0.737	2.416	1.342	1.024	2.834
15724	chrX	45806146	45807778	+	0	NA	Intergenic	ORR1D-int|LTR|ERVL-MaLR	521949	NR_045440	75133	Mm.417818	NR_045440	ENSMUSG00000085157	4930515L19Rik	-	RIKEN cDNA 4930515L19 gene	ncRNA	4.417	9.856	3.764	4.203	3.342	2.758	3.080	4.607	2.348	8.542	4.601	2.391	3.476	5.899	3.970	3.945	1.597	4.735	3.342	1.489	3.369	4.089	2.143	4.244	8.351
13843	chr7	141963851	141968862	+	0	NA	intron (NM_001009930, intron 1 of 19)	intron (NM_001009930, intron 1 of 19)	16605	NM_001009929	75770	Mm.274868	NM_029426	ENSMUSG00000053046	Brsk2	4833424K13Rik|SAD-A|SADA	BR serine/threonine kinase 2	protein-coding	4.763	nan	0.182	3.183	3.383	1.443	5.684	6.560	nan	4.203	2.805	3.226	8.049	6.634	5.390	5.435	4.074	6.476	0.565	0.288	0.238	0.448	0.320	0.249	5.223
15791	chrX	100914318	100916337	+	0	NA	intron (NM_031384, intron 18 of 29)	intron (NM_031384, intron 18 of 29)	138056	NM_001177780	53310	Mm.4615	NM_016747	ENSMUSG00000000881	Dlg3	Dlgh3|SAP102|mKIAA1232	discs, large homolog 3 (Drosophila)	protein-coding	2.454	0.889	0.215	2.237	0.991	0.682	1.212	1.453	1.941	3.469	1.241	0.776	2.962	4.372	1.275	2.306	0.958	3.021	0.457	0.575	0.182	0.560	0.049	0.102	1.804
10792	chr4	138935748	138947201	+	0	NA	Intergenic	(GA)n|Simple_repeat|Simple_repeat	-25638	NM_025786	66825	Mm.252312	NM_025786	ENSMUSG00000070661	Rnf186	9130020G10Rik	ring finger protein 186	protein-coding	4.514	2.271	0.932	4.344	4.163	2.346	4.020	4.934	nan	8.719	3.830	2.147	3.902	5.956	3.867	4.068	2.747	nan	2.690	2.647	1.721	4.171	nan	2.197	4.070
8969	chr2	164735388	164739508	+	0	NA	intron (NM_027961, intron 1 of 3)	intron (NM_027961, intron 1 of 3)	5819	NM_027961	71856	Mm.330770	NM_027961	ENSMUSG00000076434	Wfdc3	1700015L13Rik|1700127F16Rik	WAP four-disulfide core domain 3	protein-coding	10.548	14.607	4.049	11.836	6.261	3.843	7.823	10.049	5.713	11.475	6.998	5.148	8.824	9.225	10.350	12.364	8.105	nan	6.427	3.938	5.125	7.865	4.111	4.659	17.523
893	chr1	173847335	173852532	+	0	NA	Intergenic	Intergenic	30254	NM_001170853	100040462	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	2.024	5.965	2.071	1.802	0.754	0.411	0.486	0.667	1.366	1.495	0.850	0.633	0.606	nan	1.053	1.346	1.125	1.243	0.688	1.598	0.783	0.364	0.288	0.251	1.191
6414	chr17	25968359	25972332	+	0	NA	intron (NM_001347334, intron 2 of 11)	intron (NM_001347334, intron 2 of 11)	-4840	NM_015830	50817	Mm.216072	NM_015830	ENSMUSG00000037326	Capn15	Solh	calpain 15	protein-coding	5.518	6.058	0.916	7.129	1.736	0.885	7.781	6.414	3.083	5.851	5.053	2.287	5.222	5.914	8.300	9.697	4.093	6.508	4.562	1.157	1.891	5.555	2.010	1.626	13.517
8766	chr2	146832369	146841770	+	0	NA	Intergenic	Intergenic	-18820	NM_001033298	228730	Mm.292352	NM_001033298	ENSMUSG00000074749	Kiz	Gm114|Ncrna00153|Plk1s1	kizuna centrosomal protein	protein-coding	8.193	6.999	3.024	5.993	4.568	2.889	6.905	8.366	4.786	6.724	3.003	1.475	9.725	8.774	6.710	9.042	8.306	7.328	nan	1.598	1.448	2.322	1.444	1.122	9.578
3979	chr13	37558074	37562054	+	0	NA	Intergenic	Intergenic	214719	NM_010745	17084	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	3.397	nan	0.536	6.560	1.877	0.925	nan	nan	nan	nan	1.486	1.105	4.236	5.727	3.851	nan	2.427	nan	1.313	0.805	0.616	1.804	0.927	0.524	nan
6714	chr17	48134851	48142310	+	0	NA	intron (NM_001177896, intron 2 of 3)	intron (NM_001177896, intron 2 of 3)	7727	NM_001177897	328829	Mm.466999	NM_177824	ENSMUSG00000073386	9830107B12Rik	Trem5	RIKEN cDNA 9830107B12 gene	protein-coding	3.139	2.067	1.121	2.731	2.795	1.827	7.148	3.141	2.744	3.859	1.398	1.221	3.658	5.402	4.836	6.763	nan	3.838	3.812	2.469	1.759	2.757	2.746	1.773	5.989
10459	chr4	120062895	120066726	+	0	NA	intron (NM_010657, intron 2 of 8)	intron (NM_010657, intron 2 of 8)	-96396	NM_007902	13615	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	4.130	0.512	0.470	2.855	1.809	0.827	4.663	2.197	4.533	4.453	0.726	0.390	5.943	5.409	5.068	nan	4.189	4.901	0.918	0.873	0.454	0.883	0.369	0.273	6.941
3959	chr13	34554991	34556725	+	0	NA	Intergenic	Intergenic	96823	NM_025831	66895	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	3.607	nan	0.823	1.252	1.752	0.823	nan	5.551	nan	nan	0.651	0.310	3.079	3.757	3.259	3.711	2.504	nan	0.700	1.294	0.565	1.308	1.100	0.767	3.934
12735	chr6	128224829	128232016	+	0	NA	exon (NM_001080979, exon 11 of 11)	exon (NM_001080979, exon 11 of 11)	-44619	NR_077223	330427	Mm.426356	NR_077223	ENSMUSG00000107879	9330102E08Rik	-	RIKEN cDNA 9330102E08 gene	ncRNA	3.499	nan	0.419	2.441	2.113	1.379	2.404	6.115	2.443	2.122	1.188	1.393	3.270	2.972	2.554	5.082	2.505	3.126	0.576	0.519	0.573	0.754	0.418	0.390	3.535
9008	chr2	166699743	166703198	+	0	NA	intron (NR_105783, intron 2 of 2)	intron (NR_105783, intron 2 of 2)	12362	NM_177782	277360	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.889	8.505	6.460	0.927	0.789	0.570	0.805	0.782	0.975	0.736	0.568	0.486	0.478	nan	0.653	0.990	1.172	nan	6.732	5.846	4.551	6.159	8.475	6.424	nan
10434	chr4	118106685	118108112	+	0	NA	intron (NM_009176, intron 2 of 11)	intron (NM_009176, intron 2 of 11)	27548	NM_001285520	20441	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	2.090	1.078	0.605	2.099	2.659	1.058	1.786	2.970	2.482	3.240	1.177	0.121	1.381	3.715	3.001	3.454	1.458	2.685	2.518	1.862	1.820	2.318	2.848	1.344	3.072
9652	chr3	105332223	105336224	+	0	NA	Intergenic	Intergenic	-118107	NM_001039347	56543	Mm.44530	NM_019931	ENSMUSG00000040896	Kcnd3	AW045978|Kncd3|Kv4.3	potassium voltage-gated channel, Shal-related family, member 3	protein-coding	0.188	0.584	0.409	0.447	0.143	0.047	0.434	0.136	0.293	0.334	0.166	0.070	0.207	0.306	nan	0.496	0.333	0.562	1.872	1.555	0.963	4.390	1.715	0.917	0.505
6047	chr16	35046264	35048735	+	0	NA	intron (NM_023587, intron 2 of 6)	intron (NM_023587, intron 2 of 6)	25078	NM_023587	70757	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	4.619	0.763	0.774	2.304	1.877	1.136	2.783	8.629	2.601	2.576	3.905	1.908	2.670	4.522	3.722	3.747	2.561	3.718	3.053	1.239	0.607	1.425	3.177	1.970	3.586
15742	chrX	70960318	70965152	+	0	NA	Intergenic	Intergenic	-87521	NM_001256048	333639	Mm.371730	NM_001081354	ENSMUSG00000059401	Mamld1	G630014P10Rik	mastermind-like domain containing 1	protein-coding	5.882	10.285	2.425	7.348	2.209	0.775	3.488	4.158	3.212	5.408	4.253	1.699	4.372	6.287	5.401	7.790	2.917	6.034	3.395	1.225	1.409	3.952	1.725	1.571	9.162
10051	chr4	46519927	46521648	+	0	NA	intron (NM_029077, intron 4 of 5)	intron (NM_029077, intron 4 of 5)	15354	NM_029077	74735	Mm.240252	NM_029077	ENSMUSG00000039853	Trim14	5830400N10Rik|pub	tripartite motif-containing 14	protein-coding	5.618	3.008	1.653	3.956	5.259	4.859	4.328	5.235	3.770	6.268	4.065	5.876	3.861	6.067	4.689	5.154	6.296	4.740	3.469	1.749	3.355	nan	1.909	2.440	5.690
5210	chr15	58877225	58882562	+	0	NA	Intergenic	Intergenic	7244	NM_026642	68260	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	4.735	9.251	4.666	nan	1.818	1.092	5.334	nan	nan	nan	0.712	0.625	6.902	3.253	4.442	nan	2.035	4.186	1.064	1.231	1.172	0.925	0.827	0.671	3.889
755	chr1	155333209	155339086	+	0	NA	intron (NM_011273, intron 3 of 14)	Lx4A|LINE|L1	81297	NM_011273	19775	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	6.714	9.093	6.147	4.469	3.741	2.920	3.798	3.355	nan	4.182	2.401	1.400	3.286	3.736	3.351	nan	3.436	3.745	nan	1.740	3.171	3.145	nan	3.089	5.118
7976	chr2	13647854	13650009	+	0	NA	Intergenic	Intergenic	74620	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	2.618	0.835	0.723	1.583	1.428	0.401	3.162	4.035	2.263	1.967	0.243	1.153	5.088	3.788	4.236	3.723	3.916	3.740	0.521	0.507	0.236	0.429	0.365	0.087	2.699
15708	chrX	35807504	35810983	+	0	NA	Intergenic	Lx2|LINE|L1	-79589	NM_001009947	75974	Mm.32873	NM_177745	ENSMUSG00000031093	Dock11	5033414A21Rik|8030476J24|Zizimin2|sph238	dedicator of cytokinesis 11	protein-coding	5.851	2.988	1.397	4.025	7.057	4.431	3.916	4.537	3.447	4.979	5.093	2.597	3.879	7.453	3.638	4.513	4.680	4.358	1.673	2.622	1.253	1.519	2.738	1.968	4.129
12546	chr6	100130728	100131686	+	0	NA	Intergenic	Intergenic	156151	NM_019743	56353	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	2.872	1.103	0.347	2.573	1.664	0.744	3.304	5.307	2.754	2.407	0.989	0.948	2.158	4.083	2.311	4.350	1.837	3.352	1.068	nan	0.831	1.090	1.540	0.731	2.777
12044	chr6	8679538	8683154	+	0	NA	intron (NM_001252266, intron 5 of 11)	intron (NM_001252266, intron 5 of 11)	77112	NM_001252266	15893	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	1.870	1.639	1.285	2.176	2.020	1.086	1.727	4.563	1.603	1.840	0.440	1.090	3.627	5.270	3.852	4.603	2.212	2.739	1.013	0.981	0.622	0.848	0.726	0.898	nan
3942	chr13	34142006	34148846	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-15072	NM_023716	73710	Mm.379227	NM_023716	ENSMUSG00000045136	Tubb2b	2410129E14Rik|brdp	tubulin, beta 2B class IIB	protein-coding	6.067	nan	0.737	2.625	3.168	1.999	nan	7.975	3.771	nan	1.200	0.753	5.632	9.811	7.686	8.222	6.050	5.349	0.618	0.674	0.493	0.752	1.190	0.993	9.819
8631	chr2	126532066	126534817	+	0	NA	Intergenic	L1MC4|LINE|L1	-19583	NM_011978	26458	Mm.290044	NM_011978	ENSMUSG00000027359	Slc27a2	ACSVL1|FATP2|VLCS|Vlac|Vlacs	solute carrier family 27 (fatty acid transporter), member 2	protein-coding	9.665	5.671	2.638	6.539	5.296	3.204	6.485	7.935	6.694	7.494	3.160	2.210	8.665	8.550	7.203	8.872	9.895	7.729	3.109	2.020	2.075	2.765	2.265	2.540	10.018
15880	chrX	165474004	165475563	+	0	NA	Intergenic	L1Md_T|LINE|L1	-147802	NM_183427	237213	Mm.113877	NM_183427	ENSMUSG00000018589	Glra2	-	glycine receptor, alpha 2 subunit	protein-coding	4.451	2.804	0.699	4.362	2.054	0.655	3.398	4.902	3.564	nan	1.531	1.422	4.016	4.028	6.579	11.176	2.092	5.435	1.047	0.835	0.806	2.188	1.206	0.412	7.086
15340	chr9	78063766	78066732	+	0	NA	3' UTR (NM_008103, exon 6 of 6)	3' UTR (NM_008103, exon 6 of 6)	13291	NM_008103	14531	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1 (Drosophila)	protein-coding	2.526	0.672	0.434	1.290	0.859	0.333	2.991	5.001	3.008	2.194	2.029	4.675	3.170	2.845	3.671	3.856	2.246	3.366	0.571	nan	0.289	0.526	0.528	0.481	nan
5394	chr15	78135236	78136375	+	0	NA	Intergenic	ID_B1|SINE|B4	-16525	NM_007583	12300	Mm.277338	NM_007583	ENSMUSG00000019146	Cacng2	AW060990|B230105C07Rik|B930041E13Rik|stargazer|stargazin|stg|wag|waggler	calcium channel, voltage-dependent, gamma subunit 2	protein-coding	7.134	5.093	1.771	nan	2.576	0.746	2.356	2.300	2.509	2.945	3.242	1.053	1.571	4.014	2.155	3.669	2.127	2.225	1.182	2.026	2.325	nan	0.802	0.448	3.947
8075	chr2	29819470	29822284	+	0	NA	Intergenic	Intergenic	-6512	NM_026615	68205	Mm.20273	NM_026615	ENSMUSG00000069020	Urm1	2900073H19Rik	ubiquitin related modifier 1	protein-coding	9.630	7.631	2.589	11.119	5.783	4.681	7.496	9.674	6.639	10.635	6.454	5.368	8.220	9.953	8.547	10.885	10.395	9.878	6.582	4.062	4.651	7.091	5.437	6.063	13.100
7545	chr19	9179806	9182414	+	0	NA	Intergenic	Intergenic	-45544	NM_025610	66514	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	7.358	3.904	0.930	6.664	2.688	0.711	5.195	9.973	4.836	5.460	6.498	3.389	5.452	7.376	5.664	7.514	5.973	8.656	0.570	1.022	0.533	1.353	0.664	0.346	11.635
13901	chr7	149030882	149032203	+	0	NA	Intergenic	Intergenic	3716707	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	nan	nan	0.345	nan	0.142	0.091	1.545	3.086	nan	1.163	0.398	0.116	2.279	2.808	1.790	1.649	0.526	1.309	2.662	0.568	0.680	2.484	nan	0.379	3.132
2268	chr11	59972457	59979790	+	0	NA	intron (NM_001290011, intron 4 of 6)	intron (NM_001290011, intron 4 of 6)	-11179	NM_009026	19416	Mm.3903	NM_009026	ENSMUSG00000049892	Rasd1	Dexras1	RAS, dexamethasone-induced 1	protein-coding	0.988	0.887	0.337	1.740	1.002	0.471	1.059	1.105	1.119	1.368	0.543	0.387	1.033	nan	1.592	1.915	0.919	2.062	nan	2.051	1.572	4.287	3.724	1.978	nan
6409	chr17	25406489	25411811	+	0	NA	intron (NM_001163691, intron 2 of 34)	MLT1A0|LTR|ERVL-MaLR	24633	NM_021415	58226	Mm.268378	NM_021415	ENSMUSG00000024112	Cacna1h	Cav3.2|MNCb-1209|alpha13.2	calcium channel, voltage-dependent, T type, alpha 1H subunit	protein-coding	9.639	11.548	3.046	10.561	4.365	2.346	11.242	6.660	6.914	12.573	7.442	3.401	9.914	11.633	11.789	13.679	7.290	10.716	6.199	2.392	2.264	6.799	3.810	3.689	16.608
6448	chr17	27210382	27212578	+	0	NA	Intergenic	RMER19B|LTR|ERVK	-7042	NM_146075	224640	Mm.29689	NM_146075	ENSMUSG00000044857	Lemd2	BC026588|Lem2|NET25	LEM domain containing 2	protein-coding	1.855	1.433	1.034	1.636	1.782	0.866	3.914	3.285	1.562	2.146	7.404	2.510	1.531	3.466	2.298	nan	1.252	1.236	0.514	3.023	2.867	1.943	0.560	0.345	1.986
9931	chr4	10931315	10935851	+	0	NA	Intergenic	Intergenic	59085	NM_026005	67157	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	9.023	7.609	3.470	9.767	6.505	4.977	6.512	7.056	6.917	10.898	5.599	4.158	7.175	9.090	7.198	9.381	6.713	9.918	4.112	nan	2.282	3.372	3.213	3.204	11.952
9426	chr3	87328469	87332845	+	0	NA	Intergenic	Lx8|LINE|L1	-27224	NM_009690	11801	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	7.258	7.083	2.043	7.818	4.527	2.738	9.980	6.734	4.879	8.311	3.798	2.044	7.062	9.727	7.847	8.498	6.235	8.639	nan	2.052	1.600	3.359	1.983	2.391	10.973
12682	chr6	122503896	122507784	+	0	NA	Intergenic	Intergenic	-7744	NM_001347434	50530	Mm.41931	NM_015776	ENSMUSG00000030116	Mfap5	MAGP-2|MFAP-5	microfibrillar associated protein 5	protein-coding	1.179	9.072	7.466	0.932	0.660	0.554	0.288	0.676	0.651	0.619	0.732	0.511	0.270	nan	0.463	0.780	0.650	0.745	0.812	0.846	0.451	0.447	nan	0.440	0.589
15186	chr9	63824396	63828998	+	0	NA	Intergenic	Intergenic	-68703	NM_016769	17127	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	3.227	0.721	0.448	3.034	2.013	1.477	2.453	3.085	2.503	2.572	1.251	1.490	2.536	5.413	3.070	3.407	2.612	3.274	nan	1.034	0.559	0.847	0.709	0.530	5.462
6379	chr17	23922529	23923572	+	0	NA	Intergenic	Intergenic	5592	NM_001077633	620253	Mm.390964	NM_001077633	ENSMUSG00000057417	Dcpp3	Dcpp-3|EG620253|SPT-3	demilune cell and parotid protein 3	protein-coding	3.180	1.796	0.449	3.487	1.519	0.547	5.715	2.216	2.174	3.614	1.840	1.033	3.492	5.079	4.028	5.155	2.928	3.489	5.675	3.252	1.964	4.232	2.703	2.258	6.646
12781	chr6	134730116	134732673	+	0	NA	intron (NM_001048054, intron 4 of 6)	L2|LINE|L2	61234	NM_130447	70686	Mm.491182	NM_130447	ENSMUSG00000030203	Dusp16	3830417M17Rik|AW558566|D6Ertd213e|MKP-7|MKP7|Mkpm	dual specificity phosphatase 16	protein-coding	1.571	0.755	0.630	1.787	3.852	1.874	2.865	2.010	1.507	1.529	1.239	0.730	1.967	5.027	2.129	2.119	1.903	2.147	4.259	3.969	2.413	2.668	5.589	3.168	nan
5746	chr16	4414815	4418160	+	0	NA	intron (NM_001291910, intron 3 of 11)	intron (NM_001291910, intron 3 of 11)	4011	NM_001291910	11515	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	1.822	0.888	0.703	1.864	1.613	0.644	nan	2.957	1.581	1.213	0.757	1.146	2.156	2.267	1.344	2.179	1.758	2.276	4.896	3.613	2.263	2.920	7.161	4.757	1.289
13648	chr7	120602842	120606206	+	0	NA	Intergenic	B1_Mus1|SINE|Alu	6899	NR_024324	78552	Mm.289190	NR_024324	ENSMUSG00000044141	E130201H02Rik	-	Y box protein 1 pseudogene	pseudo	0.824	0.787	0.426	1.102	1.072	0.764	1.862	2.858	2.975	2.210	3.220	5.413	2.439	nan	1.425	1.800	1.417	2.009	0.554	0.700	0.259	0.587	0.289	0.200	0.793
12058	chr6	14724190	14731314	+	0	NA	intron (NM_080464, intron 1 of 3)	intron (NM_080464, intron 1 of 3)	27522	NM_080464	140491	Mm.209429	NM_080464	ENSMUSG00000042717	Ppp1r3a	GM|RG1|RGL	protein phosphatase 1, regulatory (inhibitor) subunit 3A	protein-coding	3.375	nan	0.400	2.319	6.902	4.571	4.852	3.579	nan	3.425	0.633	0.785	5.555	6.157	4.549	nan	4.934	4.197	0.675	0.479	0.413	0.456	0.534	0.481	1.953
7244	chr18	55005670	55009673	+	0	NA	Intergenic	(TTTG)n|Simple_repeat|Simple_repeat	-17491	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	8.236	nan	2.049	nan	5.456	3.999	6.859	6.280	5.389	5.866	4.980	2.917	9.747	8.400	5.232	6.722	6.541	6.440	nan	1.807	1.642	nan	3.130	2.797	nan
12831	chr6	143115095	143117783	+	0	NA	Intergenic	Cheshire|DNA|hAT-Charlie	-16287	NM_001109688	74741	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	5.727	15.937	6.805	10.442	4.628	3.250	6.227	9.631	6.000	12.239	5.714	4.731	7.684	9.114	9.241	11.328	6.484	8.652	5.964	nan	2.975	6.515	3.167	3.020	12.850
8740	chr2	145609772	145614269	+	0	NA	intron (NM_053195, intron 12 of 16)	intron (NM_053195, intron 12 of 16)	-57038	NM_001037929	627302	Mm.445953	NM_001037929		Gm14092	OTTMUSG00000015643	predicted gene 14092	protein-coding	8.250	1.573	0.551	7.636	3.513	1.866	10.872	7.115	4.550	5.467	5.071	3.238	4.938	5.024	6.073	6.268	4.185	6.942	nan	1.958	1.204	4.316	2.749	1.594	7.270
11257	chr5	64327417	64328562	+	0	NA	intron (NM_001310611, intron 17 of 21)	intron (NM_001310611, intron 17 of 21)	97632	NM_001289514	57915	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	4.677	0.963	0.536	3.660	1.860	0.624	4.169	4.017	3.661	3.572	2.378	1.522	3.703	4.136	4.211	3.789	1.579	4.439	3.738	0.735	0.339	2.860	1.934	1.300	3.420
411	chr1	89786849	89789473	+	0	NA	intron (NM_178119, intron 12 of 17)	intron (NM_178119, intron 12 of 17)	-104269	NR_015540	74403	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	7.043	2.299	0.862	4.449	3.609	1.715	6.002	6.323	5.844	4.777	2.368	3.279	6.032	6.613	5.296	8.415	5.662	6.700	1.514	1.302	0.561	1.696	1.175	0.401	5.010
9135	chr3	8992384	8994427	+	0	NA	intron (NM_001025263, intron 1 of 6)	intron (NM_001025263, intron 1 of 6)	11110	NM_009412	21985	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	5.268	1.181	0.566	2.224	5.245	2.466	5.119	5.626	3.241	3.120	3.883	2.784	3.107	5.849	4.371	3.281	2.488	4.222	1.522	1.838	0.819	1.131	1.472	1.093	4.452
6583	chr17	35195437	35197245	+	0	NA	TTS (NM_008518)	TTS (NM_008518)	1369	NR_105939	102465588		NR_105939	ENSMUSG00000098291	Mir6973a	Gm27967|mmu-mir-6973a	microRNA 6973a	ncRNA	7.580	5.011	1.570	6.021	4.078	1.614	10.016	5.820	2.607	4.170	2.314	0.721	4.869	8.883	8.172	9.998	7.049	6.301	2.070	2.549	1.357	3.099	2.918	1.514	15.026
15223	chr9	66084207	66094553	+	0	NA	intron (NM_019727, intron 13 of 14)	intron (NM_019727, intron 13 of 14)	-19649	NM_001025612	382083	Mm.477103	NM_001025612	ENSMUSG00000039452	Snx22	Gm1120	sorting nexin 22	protein-coding	3.084	1.369	0.627	2.588	1.168	0.836	3.912	1.625	1.854	1.886	1.130	0.523	4.694	4.123	nan	3.448	2.247	3.905	nan	1.766	1.343	2.619	0.798	0.577	5.319
10600	chr4	131467268	131468954	+	0	NA	Intergenic	MTC|LTR|ERVL-MaLR	370167	NM_011214	19273	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding	2.782	0.670	0.560	2.073	3.366	2.327	2.350	1.960	2.015	1.981	1.750	1.619	1.121	2.199	1.554	1.608	1.286	1.373	1.863	6.476	5.260	1.982	1.949	2.376	1.365
10489	chr4	123087817	123094682	+	0	NA	Intergenic	Intergenic	-13912	NM_007559	12164	Mm.439764	NM_007559	ENSMUSG00000002384	Bmp8b	Op3	bone morphogenetic protein 8b	protein-coding	4.557	4.067	1.469	6.423	3.703	2.290	2.700	3.764	4.219	6.108	3.054	1.799	3.766	5.115	nan	5.194	2.477	6.189	2.393	1.183	1.661	3.351	1.641	1.987	6.210
6370	chr17	21668631	21674696	+	0	NA	Intergenic	L1VL1|LINE|L1	-18549	NR_045766	100310809	Mm.293030	NR_045766		Gm10509	ENSMUSG00000073448	zinc finger protein 51 pseudogene	pseudo	6.642	6.934	3.543	7.107	5.783	3.544	5.540	4.823	5.279	6.789	8.241	5.201	3.907	5.676	6.442	7.390	5.136	6.289	2.798	3.452	2.753	2.512	3.142	2.616	nan
2016	chr11	20815291	20817407	+	0	NA	Intergenic	MTE2b|LTR|ERVL-MaLR	14759	NM_173752	216551	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	5.269	2.555	1.033	4.785	2.158	0.349	4.725	3.838	2.887	3.420	5.101	1.975	3.840	4.872	5.536	5.028	3.247	4.746	1.205	0.935	0.635	1.944	0.571	0.234	5.660
10154	chr4	62274575	62275448	+	0	NA	Intergenic	Intergenic	-11418	NM_025286	20530	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	2.057	2.387	0.149	4.577	0.607	1.007	nan	0.994	1.417	2.112	0.386	0.869	2.617	3.162	2.037	2.402	1.327	3.494	4.070	2.615	0.834	7.189	1.357	0.389	2.346
942	chr1	182310029	182325944	+	0	NA	exon (NM_175127, exon 4 of 5)	exon (NM_175127, exon 4 of 5)	17152	NR_015458	67330	Mm.331019	NR_015458	ENSMUSG00000100147	1700047M11Rik	-	RIKEN cDNA 1700047M11 gene	ncRNA	7.294	11.240	5.202	6.457	4.314	2.351	5.114	4.576	4.431	5.090	2.067	1.369	6.718	nan	5.827	9.816	5.589	7.507	1.172	1.285	0.909	2.068	0.733	0.535	7.021
1376	chr10	67193832	67195196	+	0	NA	intron (NM_207221, intron 3 of 25)	Lx6|LINE|L1	8764	NM_001242396	108829	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	4.103	0.552	0.577	0.889	3.220	0.756	3.608	4.996	2.275	3.262	0.723	0.400	2.901	4.985	2.382	2.301	3.044	nan	0.468	0.435		0.298	0.484	0.279	2.089
11857	chr5	138217050	138221269	+	0	NA	Intergenic	CT-rich|Low_complexity|Low_complexity	-6745	NM_001013773	381680	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	3.986	5.833	1.771	4.925	1.930	1.557	3.568	3.706	2.706	5.585	2.492	2.082	2.928	4.422	4.881	5.441	2.842	4.285	4.348	1.846	3.103	4.683	3.473	4.614	5.980
10490	chr4	123099927	123101758	+	0	NA	Intergenic	Intergenic	-4319	NM_007559	12164	Mm.439764	NM_007559	ENSMUSG00000002384	Bmp8b	Op3	bone morphogenetic protein 8b	protein-coding	5.969	4.634	2.959	7.445	7.691	6.779	2.156	4.211	6.036	4.271	4.862	3.170	3.125	5.398	3.112	4.140	2.116	8.278	0.782	0.932	1.420	1.268	0.681	0.833	6.211
6634	chr17	44288461	44293386	+	0	NA	Intergenic	Intergenic	102351	NM_172621	224796	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg	chloride intracellular channel 5	protein-coding	3.940	0.640	0.435	4.166	6.067	4.165	9.375	2.197	2.616	4.594	0.730	0.529	6.577	12.587	5.471	7.732	5.722	4.276	0.624	0.936	0.369	0.280	0.509	0.417	9.526
6270	chr16	96302576	96306122	+	0	NA	intron (NM_033149, intron 1 of 2)	ORR1E|LTR|ERVL-MaLR	23317	NM_033149	93961	Mm.154783	NM_033149	ENSMUSG00000074892	B3galt5	1190002B21Rik|AU045265|b3Galt-V	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5	protein-coding	8.155	10.087	2.746	10.047	4.718	3.164	7.588	10.745	5.637	14.818	6.368	2.780	8.723	10.577	9.149	12.526	5.359	10.725	nan	1.338	2.711	5.042	2.584	4.072	16.153
2369	chr11	69284988	69286347	+	0	NA	Intergenic	L1_Mur3|LINE|L1	38206	NM_172560	216846	Mm.28774	NM_172560	ENSMUSG00000032782	Cntrob	9830165K03Rik|Lip8|Nip2	centrobin, centrosomal BRCA2 interacting protein	protein-coding	2.040	1.571	0.486	1.405	1.468	1.277	3.779	4.989	2.875	1.589	2.989	4.833	2.523	3.921	5.774	4.496	1.310	2.223	0.653	0.376	0.363	0.409	nan	0.283	1.956
7482	chr19	4569048	4574303	+	0	NA	intron (NM_001162946, intron 2 of 20)	B1_Mur2|SINE|Alu	-22644	NM_008797	18563	Mm.1845	NM_008797	ENSMUSG00000024892	Pcx	Pc|Pcb	pyruvate carboxylase	protein-coding	2.772	0.475	0.367	3.078	3.432	2.493	3.248	2.994	nan	3.769	2.593	2.228	2.054	2.981	2.030	3.118	3.658	4.545	0.570	0.764	0.785	1.008	0.656	0.737	2.943
10746	chr4	137410740	137413955	+	0	NA	Intergenic	Intergenic	-2556	NM_001126318	242711	Mm.475541	NM_001126318	ENSMUSG00000078520	Cela3a	Gm13011|OTTMUSG00000009877	chymotrypsin-like elastase family, member 3A	protein-coding	nan	0.994	0.419	3.635	3.457	2.617	4.060	4.188	nan	4.709	5.051	2.745	4.987	7.198	3.829	5.542	2.756	nan	0.921	0.683	0.988	1.515	nan	0.971	5.820
13810	chr7	137717311	137722583	+	0	NA	Intergenic	MLT1A0|LTR|ERVL-MaLR	282273	NR_033611	620016	Mm.388932	NR_033611	ENSMUSG00000100863	Gm12669	OTTMUSG00000007920	glutaredoxin 3 pseudogene	pseudo	5.260	nan	0.492	4.298	3.823	2.404	4.734	7.621	4.750	4.888	3.834	2.453	7.196	8.161	7.620	7.921	5.314	6.959	1.368	1.121	0.917	4.484	1.051	0.772	7.275
2816	chr11	101702867	101705507	+	0	NA	Intergenic	Intergenic	-28769	NM_144831	217207	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	1.990	nan	0.336	2.376	2.733	2.260	2.122	1.755	2.092	2.383	0.395	0.723	3.473	5.260	4.645	4.656	2.712	4.095	1.737	nan	1.352	2.609	nan	nan	3.426
9549	chr3	95906085	95910737	+	0	NA	Intergenic	B2_Mm1t|SINE|B2	-3772	NM_011797	23831	Mm.489647	NM_011797	ENSMUSG00000038526	Car14	AW536446|Ca14	carbonic anhydrase 14	protein-coding	6.452	4.886	1.781	6.128	5.314	2.842	6.730	6.394	3.910	6.075	4.682	2.790	6.358	8.515	5.931	5.984	5.724	7.643	3.789	3.056	1.965	5.145	3.792	3.165	7.765
15019	chr9	44375376	44379150	+	0	NA	Intergenic	B2_Mm2|SINE|B2	-2227	NM_021395	12282	Mm.116721	NM_021395	ENSMUSG00000032115	Hyou1	AI415631|CBP-140|Cab140|Grp170|Orp150	hypoxia up-regulated 1	protein-coding	5.335	9.365	6.994	3.983	3.962	3.061	3.236	4.121	4.256	4.341	2.406	1.674	2.797	4.848	nan	nan	2.809	3.910	2.587	2.713	3.362	nan	3.314	2.809	nan
14700	chr8	123080240	123084332	+	0	NA	intron (NM_153176, intron 9 of 16)	CT-rich|Low_complexity|Low_complexity	16778	NM_153176	234847	Mm.292075	NM_153176	ENSMUSG00000000738	Spg7	AI452278|AU015315|Cmar|PGN	spastic paraplegia 7 homolog (human)	protein-coding	1.476	nan	0.282	nan	0.999	0.669	nan	nan	0.728	1.451	0.506	0.261	0.918	1.353	nan	1.875	1.146	2.016	nan	0.958	1.074	4.131	0.523	nan	3.131
10239	chr4	86543703	86549433	+	0	NA	intron (NM_001081096, intron 1 of 3)	B4|SINE|B4	11735	NM_001081096	75811	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	3.153	nan	0.718	3.527	2.342	1.640	1.460	nan	nan	2.966	1.457	2.149	1.350	2.313	1.730	2.504	1.178	nan	0.647	nan	0.702	2.079	0.671	0.382	nan
12822	chr6	140608946	140610409	+	0	NA	Intergenic	RLTR14_RN|LTR|ERV1	-12986	NM_178803	11569	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	1.560	0.888	1.049	1.950	2.500	1.563	6.024	9.088	1.868	2.293	0.891	0.876	4.793	4.646	4.506	6.263	5.924	2.391	nan	0.707	1.065	1.493	0.423	0.954	2.913
10393	chr4	115510822	115513269	+	0	NA	Intergenic	Intergenic	-6242	NM_010011	13117	Mm.10742	NM_010011	ENSMUSG00000066072	Cyp4a10	AI647584|Cyp4a|D4Rp1|Msp-3|RP1	cytochrome P450, family 4, subfamily a, polypeptide 10	protein-coding	6.094	5.333	3.081	6.382	3.007	2.385	4.058	5.035	3.987	4.634	3.251	2.394	4.263	5.563	4.902	5.152	4.212	5.052	4.909	3.588	4.460	6.390	3.094	2.972	6.959
2802	chr11	101004444	101005413	+	0	NA	Intergenic	B1_Mur2|SINE|Alu	-4524	NM_016920	11975	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	2.108	6.844	4.934	2.326	3.218	2.239	3.196	1.814	0.916	1.170	0.715	2.705	0.766	2.063	2.214	1.416	1.488	1.465	5.580	7.468	6.735	5.064	7.251	7.935	1.116
15256	chr9	69895377	69897467	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	-93044	NM_016787	12175	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	6.024	1.043	0.900	1.446	1.631	1.285	6.793	8.897	3.490	2.494	7.147	7.233	2.406	6.001	5.031	2.131	2.150	2.260	nan	1.211	0.920	2.040	2.764	1.799	1.523
231	chr1	60859761	60860670	+	0	NA	Intergenic	Intergenic	-48810	NM_009843	12477	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	3.205	1.918	0.987	1.542	1.637	0.175	2.229	1.790	1.399	2.218	0.549		2.444	3.055	3.939	5.084	3.434	3.090	0.893	0.768	0.231	1.067	0.216	0.103	3.085
14572	chr8	109227281	109229859	+	0	NA	intron (NR_126329, intron 6 of 9)	intron (NR_126329, intron 6 of 9)	112338	NR_002928	384864	Mm.390083	NR_002928		Gm1943	-	WD repeat domain 70 pseudogene	pseudo	4.029	1.208	0.051	4.055	2.208	1.984	1.993	3.497	2.580	1.844	1.166	1.154	3.206	2.307	3.496	4.062	2.667	3.380	5.863	7.689	10.031	nan	7.391	7.433	4.179
14067	chr8	23370391	23373537	+	0	NA	Intergenic	MERVL-int|LTR|ERVL	-39538	NM_013834	20377	Mm.281691	NM_013834	ENSMUSG00000031548	Sfrp1	2210415K03Rik|AW011917|AW107218|AW742929|sFRP-1	secreted frizzled-related protein 1	protein-coding	5.741	nan	0.610	3.103	3.793	2.878	2.640	2.268	2.217	2.553	0.993	1.000	1.466	2.387	2.687	4.064	4.292	2.500	0.594	1.338	0.878	nan	1.231	0.716	3.766
6102	chr16	45885805	45895149	+	0	NA	Intergenic	Intergenic	-46099	NM_001252442	208177	Mm.211477	NM_153412	ENSMUSG00000033149	Phldb2	AV253284|C820004H04Rik|LL5b|LL5beta	pleckstrin homology like domain, family B, member 2	protein-coding	5.622	0.673	0.403	3.074	4.547	2.505	4.237	5.286	3.588	4.100	1.804	1.619	6.209	6.612	3.251	4.903	3.525	6.558	1.021	0.753	0.732	0.670	0.745	0.457	3.623
9995	chr4	40782890	40788615	+	0	NA	Intergenic	MLTR11A|LTR|ERVK	-27867	NM_021535	74255	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	nan	4.077	1.890	4.924	5.324	3.842	3.435	4.792	5.011	4.454	3.568	3.780	3.111	4.935	4.217	nan	2.906	nan	1.917	1.453	1.907	1.612	1.015	1.004	3.904
551	chr1	128517131	128519675	+	0	NA	Intergenic	Intergenic	73896	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	5.383	nan	0.619	2.506	3.368	2.031	4.045	1.664	3.352	4.082	1.747	0.870	4.710	4.702	3.082	5.278	4.540	4.673	nan	0.918	0.682	0.395	0.794	0.605	3.323
4700	chr14	56502863	56505952	+	0	NA	intron (NM_001033043, intron 28 of 36)	B3|SINE|B2	67439	NM_001014996	219103	Mm.212525	NM_001014996	ENSMUSG00000064128	Cenpj	4932437H03Rik|CPAP|Gm81|LAP|LIP1|Sas4	centromere protein J	protein-coding	7.587	11.674	3.278	8.094	4.839	2.965	7.030	11.761	4.835	8.370	5.661	3.268	6.018	7.818	7.983	8.856	3.371	6.839	3.112	1.756	2.221	3.880	2.847	3.246	11.967
12222	chr6	50327048	50336214	+	0	NA	intron (NM_001163645, intron 11 of 21)	intron (NM_001163645, intron 11 of 21)	51206	NM_027881	71720	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	3.339	5.142	2.104	1.949	0.873	0.761	4.623	4.657	3.701	3.520	6.786	4.356	6.099	6.151	6.200	4.774	3.856	6.438	nan	1.670	0.883	1.897	1.899	1.622	5.614
4720	chr14	58500502	58503215	+	0	NA	Intergenic	RCHARR1|DNA|hAT-Charlie	429172	NM_013518	14180	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	4.194	nan	1.012	3.603	2.867	1.813	3.098	4.353	4.692	3.545	3.302	2.429	2.643	4.902	3.992	3.888	3.077	5.952	1.050	0.890	1.140	1.322	0.732	0.883	5.141
14082	chr8	25529760	25532324	+	0	NA	intron (NM_001079908, intron 1 of 17)	intron (NM_001079908, intron 1 of 17)	12283	NM_001079908	14182	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	2.971	nan	0.781	2.214	1.363	0.707	3.153	2.410	2.167	2.268	7.682	4.454	1.200	2.419	3.136	2.378	1.212	2.601	0.537	0.766	0.335	nan	0.321	0.170	2.179
9361	chr3	65376712	65378597	+	0	NA	3' UTR (NM_001289450, exon 15 of 15)	3' UTR (NM_001289450, exon 15 of 15)	14899	NM_026155	67437	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	4.728	0.797	0.489	1.978	3.594	1.990	5.887	3.356	2.646	3.066	0.556	0.652	4.271	6.360	3.464	4.313	4.295	4.279	1.789	0.999	0.865	0.959	1.635	1.212	3.359
5926	chr16	24184713	24195292	+	0	NA	Intergenic	Lx5c|LINE|L1	-201390	NM_009744	12053	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	1.635	9.548	6.768	1.262	1.154	0.795	0.972	2.030	1.532	1.365	1.742	2.200	nan	1.228	1.029	nan	1.026	1.442	0.866	1.003	0.449	0.720	nan	0.543	1.148
7365	chr18	69744750	69746343	+	0	NA	Intergenic	Intergenic	-180013	NM_201362	381175	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	5.740	2.079	0.918	6.569	1.920	0.780	1.642	1.871	3.867	3.499	1.832	1.569	2.317	3.345	2.505	4.009	1.643	5.401	1.680	0.621	0.470	1.624	0.678	0.467	2.416
13786	chr7	135560925	135562472	+	0	NA	intron (NM_001316678, intron 1 of 19)	B3|SINE|B2	-4464	NR_035488	100316818		NR_035488	ENSMUSG00000088141	Mir1962	mir-1962|mmu-mir-1962	microRNA 1962	ncRNA	3.517	10.205	1.873	6.866	1.955	0.865	4.027	2.529	3.340	11.818	3.114	1.554	4.162	6.027	5.287	6.318	2.337	5.599	1.703	0.570	0.549	1.121	0.928	1.913	9.781
12570	chr6	108647862	108650447	+	0	NA	intron (NR_104577, intron 1 of 6)	intron (NR_104577, intron 1 of 6)	-11475	NM_011498	20893	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	2.968	1.338	0.779	1.299	2.730	1.408	2.838	3.119	2.410	2.631	7.507	4.587	2.302	2.700	1.566	2.038	2.427	1.237	nan	1.881	1.328	0.843	1.388	0.632	nan
3753	chr12	113170290	113178070	+	0	NA	Intergenic	L1MD|LINE|L1	-11723	NM_153776	69195	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	6.008	1.294	0.500	3.424	1.466	0.744	7.271	6.927	3.226	3.573	2.924	1.939	7.829	7.297	7.203	8.087	7.068	4.965	2.123	2.287	1.536	4.450	2.293	1.526	9.575
10206	chr4	81949238	81953098	+	0	NA	Intergenic	Intergenic	-114212	NR_040659	545641	Mm.216028	NR_040659	ENSMUSG00000085022	Gm5860	EG545641	predicted gene 5860	ncRNA	5.427	1.561	0.924	4.922	2.752	1.449	4.593	5.668	5.716	5.630	4.354	2.647	5.710	5.050	4.542	5.196	3.705	5.381	5.548	3.707	2.647	13.304	2.537	1.327	5.671
2823	chr11	102084716	102092358	+	0	NA	promoter-TSS (NM_016695)	promoter-TSS (NM_016695)	-22	NM_016695	50997	Mm.36242	NM_016695	ENSMUSG00000017314	Mpp2	D11Bwg0652e|Dlg2|Dlgh2|Pals4	membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2)	protein-coding	3.776	nan	0.711	6.106	3.533	1.746	3.943	3.685	3.427	6.246	1.557	1.404	4.303	8.085	5.750	6.513	nan	5.788	1.874	nan	1.506	3.101	nan	nan	7.396
6647	chr17	45569109	45571526	+	0	NA	exon (NM_008302, exon 6 of 11)	exon (NM_008302, exon 6 of 11)	2944	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	6.434	13.097	3.277	9.869	2.675	1.425	6.894	5.269	4.697	8.090	5.574	3.965	5.699	6.832	9.993	11.135	5.035	7.493	4.397	1.572	1.053	6.540	1.932	2.602	13.721
3894	chr13	24363807	24365922	+	0	NA	intron (NM_001284519, intron 2 of 17)	RLTR19-int|LTR|ERVK	37460	NM_001111110	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	4.633	0.838	0.493	2.967	2.743	1.483	4.759	4.567	4.451	3.639	3.765	2.281	4.988	6.076	5.055	5.285	3.922	5.362	1.767	1.947	1.393	2.338	1.565	1.418	6.118
8813	chr2	152495191	152500649	+	0	NA	Intergenic	MTD|LTR|ERVL-MaLR	-7782	NM_001002791	442835	Mm.99065	NM_001002791	ENSMUSG00000027468	Defb22	9230002F21Rik	defensin beta 22	protein-coding	7.350	6.911	2.388	6.229	3.199	2.037	8.081	8.285	3.640	5.169	2.796	1.956	6.567	6.541	7.723	9.689	7.179	6.993	5.561	2.666	2.548	5.391	3.750	2.694	11.765
4583	chr14	32001199	32002901	+	0	NA	Intergenic	Intergenic	-27053	NM_030166	78754	Mm.40681	NM_030166	ENSMUSG00000021903	Galnt15	4631401E18Rik|Galntl2|mpp-GalNAc-T15	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 15	protein-coding	3.905	2.184	0.758	3.763	2.041	2.730	1.201	4.988	3.168	3.442	1.698	0.810	1.582	3.784	3.076	3.190	1.851	3.043	0.894	0.395	1.063	nan	0.452	0.993	3.574
7302	chr18	61877898	61879880	+	0	NA	intron (NM_198649, intron 1 of 22)	intron (NM_198649, intron 1 of 22)	32935	NM_198649	319713	Mm.329478	NM_198649	ENSMUSG00000032735	Ablim3	AW990719|D930036B08Rik	actin binding LIM protein family, member 3	protein-coding	8.198	nan	0.494	5.554	4.215	2.128	5.971	11.947	5.507	6.114	2.580	3.263	9.996	9.593	7.456	8.928	5.688	11.268	5.408	2.376	1.326	6.842	5.235	3.246	7.016
12592	chr6	113573521	113575508	+	0	NA	intron (NM_001347350, intron 31 of 42)	intron (NM_001347350, intron 31 of 42)	26201	NM_027633	70979	Mm.72959	NM_027633	ENSMUSG00000033963	Fancd2os	4931417G12Rik	Fancd2 opposite strand	protein-coding	9.130	10.714	3.587	8.804	6.090	3.661	7.892	9.106	5.412	9.301	4.880	3.855	8.067	11.013	10.338	12.741	7.317	7.843	4.346	2.836	3.031	5.408	nan	4.189	13.778
6995	chr18	5122868	5127432	+	0	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	78561	NM_001347449	225115	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	5.419	1.232	0.632	5.310	1.970	0.863	2.014	2.354	2.200	3.063	1.790	1.259	nan	4.265	2.976	3.149	1.789	3.696	1.036	0.742	0.385	1.171	0.908	0.545	4.460
1782	chr10	117524024	117526261	+	0	NA	Intergenic	ID_B1|SINE|B4	-104358	NM_027468	70574	Mm.339332	NM_027468	ENSMUSG00000020183	Cpm	1110060I01Rik|5730456K23Rik|AA589379|E030045M14Rik	carboxypeptidase M	protein-coding	0.516	8.756	6.947	0.967	0.692	0.216	0.354	0.315	0.510	0.598	0.392	0.359	0.197	0.384	0.545	0.719	0.534	nan	0.507	0.845	0.762	0.329	0.275	0.203	0.615
7578	chr19	10943227	10945543	+	0	NA	intron (NM_023731, intron 2 of 3)	intron (NM_023731, intron 2 of 3)	4881	NM_023731	108673	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	2.142	1.243	0.549	2.649	0.778	0.449	3.495	2.773	nan	2.076	1.864	1.037	1.129	1.545	4.136	4.180	3.409	3.768	1.639	1.228	1.608	4.803	1.498	1.662	7.701
2698	chr11	96438677	96441523	+	0	NA	Intergenic	Intergenic	24447	NR_033524	100038600	Mm.483549	NR_033524		Gm11529	OTTMUSG00000001775	predicted gene 11529	ncRNA	0.398	nan	0.543	0.269	0.117	0.054	0.256	0.233	0.266	0.250	0.296	0.104	0.245	0.233	0.182	0.458	nan	0.322	6.207	nan	2.339	6.461	5.429	nan	0.215
13393	chr7	88488777	88490492	+	0	NA	intron (NM_028238, intron 2 of 2)	MLT1I|LTR|ERVL-MaLR	59361	NM_028238	72433	Mm.276669	NM_028238	ENSMUSG00000030559	Rab38	2310011F14Rik|AU043391|cht	RAB38, member RAS oncogene family	protein-coding	8.461	13.308	4.191	7.565	4.137	3.473	6.729	8.482	nan	8.967	5.171	3.868	6.671	6.795	8.617	9.379	4.965	nan	5.007	2.547	2.077	5.699	3.255	2.838	13.232
11229	chr5	53256257	53259037	+	0	NA	Intergenic	Intergenic	-9459	NM_001145433	66278	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	3.840	0.936	0.722	2.001	3.784	2.158	4.405	5.423	2.913	3.018	4.090	3.469	4.037	6.093	4.898	3.741	2.193	3.952	2.491	1.249	0.895	2.333	0.843	1.023	2.956
15603	chr9	120869853	120873308	+	0	NA	Intergenic	MER113|DNA|hAT-Charlie	43670	NR_040742	76402	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	2.357	2.291	0.824	3.283	0.923	0.320	1.553	2.144	2.119	2.095	2.746	1.342	1.807	2.043	2.877	3.451	1.013	3.469	1.831	0.647	0.360	1.763	nan	0.455	4.219
3403	chr12	71748107	71753482	+	0	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-80274	NM_026102	208846	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	6.756	0.877	0.524	3.163	3.301	1.459	6.936	3.164	3.869	3.919	9.456	3.066	7.122	8.381	7.962	8.355	6.388	6.298	0.818	0.904	0.456	1.911	0.773	0.478	10.166
792	chr1	162178783	162182753	+	0	NA	intron (NM_001038619, intron 14 of 20)	intron (NM_001038619, intron 14 of 20)	-36855	NR_002870	474332	Mm.479755	NR_002870	ENSMUSG00000078190	Dnm3os	6030416H16Rik|Hag2|Npn1|P/L01	dynamin 3, opposite strand	ncRNA	7.145	1.923	1.409	5.192	4.825	3.218	4.517	4.004	5.874	6.565	4.348	2.103	8.010	7.470	5.330	9.048	6.857	7.250	nan	1.387	0.969	0.813	nan	0.802	5.689
6231	chr16	93712210	93718303	+	0	NA	intron (NM_027293, intron 1 of 36)	L1MB8|LINE|L1	3349	NM_027293	70028	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	6.793	1.980	0.819	5.108	3.791	2.178	6.735	9.451	nan	7.650	1.527	1.566	7.773	7.637	6.716	9.150	5.773	7.261	nan	3.847	3.217	4.691	3.480	3.179	9.491
15364	chr9	86488210	86489305	+	0	NA	intron (NM_177208, intron 4 of 38)	intron (NM_177208, intron 4 of 38)	21603	NM_177208	320615	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	2.151	0.751	0.333	1.413	0.489	0.115	2.428	1.568	1.487	1.292	0.625	0.535	2.169	3.202	2.598	2.132	2.220	1.796	1.008	0.576	0.332	0.940	0.237	0.086	5.275
10340	chr4	106500073	106501883	+	0	NA	Intergenic	Intergenic	-8735	NM_080458	140475	Mm.135448	NM_080458	ENSMUSG00000025418	Bsnd	-	Bartter syndrome, infantile, with sensorineural deafness (Barttin)	protein-coding	3.656	4.471	1.748	3.064	2.005	1.033	6.698	5.258	1.988	3.627	2.179	1.569	4.771	6.106	4.325	5.640	2.800	2.979	3.752	2.012	2.232	3.639	3.384	2.747	5.529
1248	chr10	41923786	41925335	+	0	NA	intron (NM_001034858, intron 13 of 17)	intron (NM_001034858, intron 13 of 17)	37121	NM_001013370	140742	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	2.414	2.519	0.922	5.252	2.379	1.852	0.769	1.803	1.686	1.374	0.970	1.246	1.142	1.573	1.298	1.589	0.904	2.762	1.170	1.385	1.768	1.543	1.004	1.048	1.948
6368	chr17	17992277	17995191	+	0	NA	Intergenic	L1_Mus3|LINE|L1	23276	NM_008042	14294	Mm.378918	NM_008042	ENSMUSG00000079700	Fpr3	ALX|Fpr-rs1|Fpr-s1|Fprl1|LXA4-R|Lxa4r	formyl peptide receptor 3	protein-coding	nan	0.517	0.448	0.502	0.849	0.210	0.679	nan	0.487	0.566	0.892	0.890	0.361	0.822	0.674	0.598	0.672	0.682	3.508	6.005	3.309	4.405	5.592	3.376	nan
4727	chr14	60161753	60172005	+	0	NA	Intergenic	L1MC1|LINE|L1	62036	NR_030458	751526		NR_030458	ENSMUSG00000076270	Mir719	Mirn719|mmu-mir-719	microRNA 719	ncRNA	3.634	nan	0.738	3.447	2.455	1.219	3.655	6.955	4.975	5.894	2.572	2.399	5.045	7.633	5.468	5.838	3.155	4.946	1.458	0.922	0.292	1.227	1.240	0.753	4.913
12632	chr6	116593273	116604883	+	0	NA	Intergenic	L1_Rod|LINE|L1	-16134	NM_146446	258438	Mm.357743	NM_146446	ENSMUSG00000050654	Olfr215	MOR119-2	olfactory receptor 215	protein-coding	3.746	1.833	0.713	5.521	3.678	1.661	4.467	12.142	3.621	4.185	1.392	2.024	4.718	10.811	5.748	8.013	4.041	7.541	1.068	0.656	0.419	1.243	nan	0.545	4.628
5076	chr15	25788477	25792658	+	0	NA	intron (NM_019472, intron 27 of 40)	intron (NM_019472, intron 27 of 40)	-52731	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	2.665	7.292	4.440	1.630	2.479	1.346	2.239	3.007	1.390	2.007	2.402	1.197	1.429	2.058	1.739	1.680	1.741	1.765	0.673	1.123	0.936	0.845	0.825	0.898	2.039
11979	chr5	149764505	149765521	+	0	NA	Intergenic	L1ME3E|LINE|L1	46738	NR_077242	100861794	Mm.402054	NR_077242	ENSMUSG00000106740	Gm21221	-	predicted gene, 21221	ncRNA	1.922	1.427	0.495	1.689	1.277	2.028	1.373	2.683	nan	1.715	0.963	0.505	2.493	3.632	2.402	2.887	1.998	1.708	0.833	1.128	1.117	1.275	0.480	0.968	2.704
12272	chr6	57717579	57718963	+	0	NA	intron (NM_133737, intron 2 of 8)	L1_Mur2|LINE|L1	15816	NM_133737	71835	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	5.308	1.181	0.949	1.408	1.452	0.782	4.803	4.658	2.575	2.550	1.818	2.160	1.765	3.927	2.723	nan	3.307	2.185	nan	0.942	0.543	0.752	0.532	0.343	1.636
4205	chr13	60821037	60826146	+	0	NA	Intergenic	L1Md_F3|LINE|L1	-20747	NM_027344	70202	Mm.158337	NM_027344	ENSMUSG00000056728	Ctsll3	2310051M13Rik	cathepsin L-like 3	protein-coding	6.658	0.551	0.152	4.721	5.218	2.757	6.873	5.596	6.421	8.533	1.757	1.398	7.370	10.255	7.909	nan	4.068	8.867	0.624	1.081	0.786	0.783	1.580	1.070	nan
12091	chr6	28370818	28374166	+	0	NA	Intergenic	Intergenic	49232	NM_028900	74375	Mm.332950	NM_028900	ENSMUSG00000029708	Gcc1	4932417P04Rik	golgi coiled coil 1	protein-coding	7.923	8.353	3.395	10.343	5.316	3.766	9.530	9.743	5.649	9.462	5.469	3.280	7.721	9.917	9.680	13.691	7.790	8.691	nan	1.964	3.078	5.033	2.329	3.608	12.425
13663	chr7	123311491	123313505	+	0	NA	intron (NM_001316713, intron 8 of 19)	B2_Mm2|SINE|B2	57417	NM_001122643	70497	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	1.932	0.827	0.213	2.353	2.416	0.981	2.418	nan	2.899	2.657	0.747	0.710	3.399	4.364	4.528	3.657	2.450	4.279	2.327	0.648	0.357	0.897	2.342	1.597	2.524
2462	chr11	75056772	75065679	+	0	NA	intron (NM_001002764, intron 13 of 18)	intron (NM_001002764, intron 13 of 18)	4766	NR_030454	735274		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	8.572	1.615	0.758	4.578	5.956	3.877	11.043	8.266	4.626	5.609	0.729	0.790	7.656	10.991	7.900	9.811	8.497	7.473	3.840	2.982	nan	3.877	6.116	4.715	10.009
924	chr1	180247861	180250628	+	0	NA	intron (NM_001128605, intron 1 of 10)	intron (NM_001128605, intron 1 of 10)	-3294	NM_011183	19165	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	16.004	17.298	6.336	13.840	6.285	4.278	12.432	9.930	10.092	15.635	10.125	4.855	14.632	14.639	12.424	16.941	12.261	14.006	9.223	4.841	3.664	8.130	6.170	5.321	16.991
14810	chr8	129181768	129193088	+	0	NA	Intergenic	L1VL2|LINE|L1	46618	NM_153780	72139	Mm.426514	NM_153780	ENSMUSG00000071302	2610044O15Rik8	2610044O15Rik	RIKEN cDNA 2610044O15 gene	protein-coding	11.860	nan	1.757	10.126	7.639	4.426	nan	14.549	6.489	8.755	6.526	3.757	10.591	12.675	nan	11.311	8.737	nan	nan	5.118	4.180	nan	5.469	nan	nan
5010	chr15	5056569	5059464	+	0	NA	intron (NM_001243837, intron 2 of 17)	MTC|LTR|ERVL-MaLR	5757	NM_001243837	109828	Mm.208034	NM_001243837	ENSMUSG00000079105	C7	A530026G17|Gm1238	complement component 7	protein-coding	8.354	7.991	3.841	5.475	4.985	2.914	7.800	10.582	5.852	5.266	6.496	3.104	9.827	7.083	6.495	6.284	8.849	7.587	3.976	4.055	3.018	4.436	4.726	4.424	5.921
9878	chr3	151777473	151780405	+	0	NA	Intergenic	(CATATA)n|Simple_repeat|Simple_repeat	-16048	NM_031367	15061	Mm.219544	NM_031367	ENSMUSG00000039146	Ifi44l	H-28|H28|H28-1|NS1178	interferon-induced protein 44 like	protein-coding	6.026	0.493	0.403	1.931	3.682	2.178	1.199	6.314	3.471	4.663	3.858	2.948	0.875	4.499	1.266	3.193	4.401	4.432	0.610	1.228	0.588	0.544	0.801	0.461	4.715
4064	chr13	45779586	45782530	+	0	NA	intron (NM_001199304, intron 4 of 6)	intron (NM_001199304, intron 4 of 6)	183933	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	nan	2.612	1.016	3.288	3.138	1.860	3.547	2.395	3.053	3.165	1.677	1.613	3.465	5.625	5.252	5.856	1.850	5.818	3.575	nan	0.659	2.837	1.136	0.644	7.134
13606	chr7	118937244	118938588	+	0	NA	intron (NM_001081446, intron 7 of 8)	intron (NM_001081446, intron 7 of 8)	57295	NM_022420	64297	Mm.103439	NM_022420	ENSMUSG00000008734	Gprc5b	AW125761|Raig2	G protein-coupled receptor, family C, group 5, member B	protein-coding	2.523	0.658	0.568	1.854	1.385	1.114	2.593	1.048	1.622	2.007	0.847	1.034	1.740	3.966	1.699	2.407	3.115	2.770	1.075	1.156	0.729	0.275	1.042	0.471	2.025
9827	chr3	136367272	136369134	+	0	NA	Intergenic	Intergenic	-42137	NM_001033350	242248	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	3.393	nan	1.106	4.832	4.516	2.053	3.462	2.766	3.738	2.746	3.405	4.266	3.157	3.367	3.536	3.373	2.036	6.525	2.386	1.092	0.833	1.480	0.974	1.163	3.341
2301	chr11	61818157	61820027	+	0	NA	intron (NM_013881, intron 13 of 26)	intron (NM_013881, intron 13 of 26)	36000	NM_013881	29869	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	6.197	5.377	3.601	5.369	2.080	1.018	1.818	1.772	3.062	3.400	2.975	1.513	2.408	3.920	2.754	3.431	1.846	3.505	nan	1.331	0.830	1.162	0.482	0.470	4.312
4162	chr13	55282735	55285539	+	0	NA	intron (NM_008739, intron 12 of 22)	intron (NM_008739, intron 12 of 22)	37843	NM_009000	19336	Mm.220923	NM_009000	ENSMUSG00000034789	Rab24	6530406O07Rik	RAB24, member RAS oncogene family	protein-coding	5.148	2.177	1.243	6.715	6.491	3.950	3.180	3.981	2.590	3.004	1.524	1.265	3.159	5.169	2.779	3.987	3.053	nan	1.198	0.940	1.227	1.492	2.136	2.404	5.402
10446	chr4	119133155	119137203	+	0	NA	intron (NM_011400, intron 8 of 9)	intron (NM_011400, intron 8 of 9)	26434	NM_011400	20525	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	2.962	7.032	3.277	3.992	5.157	2.642	0.934	1.540	3.547	4.549	1.476	1.822	1.926	4.577	2.270	nan	1.471	2.836	6.828	3.372	2.617	7.589	3.586	2.985	2.916
8815	chr2	152549394	152556409	+	0	NA	Intergenic	Intergenic	-12860	NM_001001444	75400	Mm.45560	NM_001001444	ENSMUSG00000044249	Defb29	0610030I09Rik|BD-29|mBD-29	defensin beta 29	protein-coding	4.504	1.444	0.634	8.424	3.699	2.344	6.551	6.170	4.158	4.926	3.094	2.412	6.066	7.933	6.899	10.258	5.819	5.957	nan	1.730	1.539	2.026	3.077	2.147	6.777
2481	chr11	76227850	76231602	+	0	NA	intron (NM_026029, intron 8 of 8)	intron (NM_026029, intron 8 of 8)	12113	NM_021294	13168	Mm.347413	NM_021294	ENSMUSG00000038057	Dbil5	ELP	diazepam binding inhibitor-like 5	protein-coding	nan	0.891	0.496	1.844	0.647	0.425	nan	0.794	0.933	1.078	0.473	0.294	0.654	nan	nan	nan	0.841	1.640	3.383	0.869	nan	4.795	1.543	1.020	1.804
2027	chr11	22337091	22339381	+	0	NA	Intergenic	IAPEz-int|LTR|ERVK	-51441	NM_001252515	216565	Mm.491265	NM_153078	ENSMUSG00000042302	Ehbp1	AF424697|Flj21950|NACSIN	EH domain binding protein 1	protein-coding	6.137	nan	0.448	3.689	3.045	1.440	4.088	6.179	3.381	3.272	2.037	2.747	4.750	5.605	6.266	4.978	5.648	5.704	1.720	1.605	1.344	4.723	1.013	1.059	5.746
11774	chr5	134798756	134803260	+	0	NA	Intergenic	Intergenic	-53685	NM_007925	13717	Mm.275320	NM_007925	ENSMUSG00000029675	Eln	AI385707|AI480567|E030024M20Rik	elastin	protein-coding	4.807	2.986	2.726	3.926	5.757	5.319	7.803	3.573	3.760	3.370	1.939	1.731	4.229	5.835	5.105	5.923	6.870	5.339	2.189	2.842	3.667	1.484	nan	1.946	5.048
4045	chr13	43857205	43860552	+	0	NA	Intergenic	Intergenic	73766	NM_001289915	12522	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	nan	9.135	6.412	nan	0.856	0.451	0.814	0.574	1.464	1.553	0.487	0.606	0.796	1.889	1.444	1.788	1.329	nan	0.589	nan	0.900	0.547	0.337	0.334	nan
3922	chr13	31400762	31403129	+	0	NA	Intergenic	Intergenic	-156225	NM_008239	15220	Mm.44235	NM_008239	ENSMUSG00000038415	Foxq1	HFH-1|Hfh1|Hfh1l|sa	forkhead box Q1	protein-coding	1.976	1.020	0.414	0.838	0.574	0.151	2.084	2.820	2.488	2.034	5.665	1.821	1.465	1.378	2.144	2.385	1.235	2.927	0.692	0.276	0.155	0.538	0.211	0.321	2.513
9029	chr2	167582748	167588274	+	0	NA	Intergenic	Intergenic	46494	NM_001311146	66589	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	6.268	3.454	1.089	6.796	3.835	1.857	2.183	4.586	3.346	4.479	4.174	2.640	2.370	4.268	3.414	4.718	2.246	nan	nan	1.467	1.371	4.312	0.936	0.687	6.281
8204	chr2	36133974	36134969	+	0	NA	intron (NR_027515, intron 1 of 5)	intron (NR_027515, intron 1 of 5)	-1927	NM_026422	67871	Mm.378232	NM_026422	ENSMUSG00000026887	Mrrf	2400002D02Rik|MRFF|MTRRF|RRF	mitochondrial ribosome recycling factor	protein-coding	3.503	0.604	0.719	1.296	1.717	0.731	3.391	5.078	1.687	1.598	0.429	0.411	4.485	3.997	3.870	4.832	3.556	2.471	0.812	0.521	0.123	0.413	0.103	0.360	1.574
1366	chr10	66557763	66571401	+	0	NA	Intergenic	Intergenic	355802	NR_138560	68488	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	6.728	3.485	1.715	4.434	4.642	2.881	5.566	7.173	3.598	5.573	4.379	2.739	4.577	5.854	5.419	6.618	6.153	nan	2.404	2.202	1.756	2.720	2.289	2.110	7.666
7797	chr19	44452164	44455895	+	0	NA	Intergenic	B3A|SINE|B2	-39443	NM_011720	22423	Mm.88365	NM_011720	ENSMUSG00000036961	Wnt8b	-	wingless-type MMTV integration site family, member 8B	protein-coding	5.288	8.467	5.477	3.727	7.517	4.723	9.636	8.672	5.154	8.359	1.777	1.697	7.045	11.941	5.788	7.858	8.486	5.825	0.875	1.833	1.321	0.632	3.081	2.364	5.604
1255	chr10	42479794	42482970	+	0	NA	Intergenic	Intergenic	-2817	NM_145743	215951	Mm.89646	NM_145743	ENSMUSG00000038302	Lace1	CG8520	lactation elevated 1	protein-coding	9.157	6.650	2.652	8.630	6.904	5.702	8.005	7.669	6.850	11.981	5.318	5.360	8.892	9.574	9.188	9.426	9.084	7.678	3.725	2.471	3.830	4.616	3.427	4.414	11.932
2660	chr11	94438240	94439595	+	0	NA	intron (NM_001177888, intron 13 of 34)	intron (NM_001177888, intron 13 of 34)	35281	NM_001177888	12291	Mm.29585	NM_009783	ENSMUSG00000020866	Cacna1g	Cav3.1d|[a]1G|a1G|alpha-1G|mKIAA1123	calcium channel, voltage-dependent, T type, alpha 1G subunit	protein-coding	2.583	nan	0.823	2.222	2.491	2.072	4.015	4.389	2.351	1.943	3.341	1.265	4.178	3.770	1.874	2.613	3.386	1.885	0.875	nan	1.075	0.657	nan	nan	1.992
7264	chr18	57562790	57564414	+	0	NA	intron (NM_001311063, intron 2 of 5)	intron (NM_001311063, intron 2 of 5)	-11205	NR_015494	75084	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	4.143	nan	0.450	nan	1.980	1.271	4.855	2.925	4.072	4.875	1.250	1.672	4.798	4.466	3.592	5.480	4.500	4.708	nan	0.775	0.574	nan	1.336	0.974	5.376
14631	chr8	116817505	116819572	+	0	NA	Intergenic	Lx4B|LINE|L1	-17126	NR_046193	78213	Mm.402039	NR_046193		4930563M20Rik	-	RIKEN cDNA 4930563M20 gene	ncRNA	0.619	0.304	0.382	0.162	0.185	0.175	0.651	0.729	0.285	0.397	0.376		0.153	0.190	0.748	nan	0.183	0.460	3.207	4.112	1.852	2.104	5.619	3.782	0.495
11590	chr5	114588273	114589839	+	0	NA	intron (NM_001004180, intron 1 of 2)	intron (NM_001004180, intron 1 of 2)	20805	NM_001004180	433940	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	2.731	1.217	0.553	3.307	0.807	0.318	3.570	3.513	1.798	1.373	0.395	0.317	2.794	5.767	4.089	3.299	2.979	1.830	nan	nan	1.186	1.606	nan	0.737	6.189
11160	chr5	34873703	34879384	+	0	NA	intron (NM_010414, intron 42 of 66)	intron (NM_010414, intron 42 of 66)	-39372	NM_207277	403174	Mm.291225	NM_207277	ENSMUSG00000051246	Msantd1	A930005I04Rik|Gm144	Myb/SANT-like DNA-binding domain containing 1	protein-coding	6.442	4.031	1.488	4.797	3.853	2.587	2.503	2.274	3.294	3.696	5.681	1.517	2.017	4.359	nan	3.105	nan	3.234	1.424	2.243	1.796	4.147	0.828	0.767	4.963
6916	chr17	84579344	84583230	+	0	NA	intron (NM_177606, intron 15 of 29)	MIR|SINE|MIR	-45212	NM_172256	213575	Mm.246119	NM_172256	ENSMUSG00000024253	Dync2li1	4933404O11Rik|CGI-60|D2lic|LIC3|mD2LIC	dynein cytoplasmic 2 light intermediate chain 1	protein-coding	10.740	21.850	9.520	8.525	4.881	2.794	9.051	7.586	5.433	7.503	10.917	5.054	5.947	10.104	7.719	8.363	7.362	6.446	3.358	5.135	2.756	3.552	3.935	2.528	10.096
15538	chr9	114751276	114754088	+	0	NA	Intergenic	MT2A|LTR|ERVL	21479	NM_026036	67213	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	7.914	3.331	0.970	6.378	1.857	1.217	7.153	7.863	4.868	8.752	2.920	2.298	8.495	9.739	9.818	11.836	4.751	8.568	4.247	0.782	1.240	3.510	nan	1.872	17.111
6976	chr18	3666580	3667771	+	0	NA	Intergenic	Intergenic	159218	NM_026505	68010	Mm.284863	NM_026505	ENSMUSG00000024232	Bambi	2610003H06Rik	BMP and activin membrane-bound inhibitor	protein-coding	4.838	1.610	0.217	2.888	0.916	0.487	1.997	3.493	2.239	2.089	1.272	0.605	3.435	4.333	2.598	3.322	3.235	3.326	1.735	1.176	0.362	1.310	2.338	0.935	5.135
3548	chr12	85202463	85203916	+	0	NA	Intergenic	Intergenic	-16292	NM_145445	217715	Mm.29041	NM_145445	ENSMUSG00000004788	Eif2b2	EIF-2Bbeta|EIF2B	eukaryotic translation initiation factor 2B, subunit 2 beta	protein-coding	5.684	0.756	0.842	2.339	1.576	1.008	2.388	3.109	2.667	2.450	1.328	0.905	3.092	3.710	1.764	3.195	6.067	3.949	0.748	1.256	0.999	0.400	0.196	0.444	nan
5893	chr16	21825173	21828062	+	0	NA	Intergenic	Intergenic	32270	NR_037957	100043489	Mm.326535	NR_037957	ENSMUSG00000097290	1300002E11Rik	1500026P21Rik	RIKEN cDNA 1300002E11 gene	ncRNA	4.665	0.778	0.387	3.342	3.511	1.970	5.576	7.130	3.151	3.132	1.510	2.119	5.727	5.776	6.344	8.750	6.105	5.843	3.762	1.965	1.444	1.911	4.438	3.084	5.155
3449	chr12	77410986	77413064	+	0	NA	intron (NM_001252616, intron 1 of 5)	intron (NM_001252616, intron 1 of 5)	1884	NM_001252616	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	6.545	2.923	1.530	3.638	1.503	0.766	4.106	1.556	2.718	2.899	1.016	0.775	5.117	6.405	4.769	6.192	3.459	7.649	0.750	0.525	0.405	0.794	0.343	0.468	7.570
639	chr1	135127762	135129529	+	0	NA	intron (NM_007955, intron 3 of 37)	intron (NM_007955, intron 3 of 37)	3930	NM_007955	13924	Mm.4450	NM_007955		Ptprv	Esp|OST|OST-PTP|mOST-PTP	protein tyrosine phosphatase, receptor type, V	protein-coding	4.822	0.458	0.245	2.174	1.911	1.281	6.997	5.629	2.091	1.297	4.392	3.108	5.490	3.363	4.852	6.818	4.529	3.944	0.990	0.526	0.694	0.892	0.926	0.588	5.465
15303	chr9	74939428	74943839	+	0	NA	Intergenic	Intergenic	-11420	NM_001113283	235493	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	2.167	7.569	5.461	1.298	1.069	0.434	0.649	0.618	1.364	1.330	2.258	1.585	0.440	1.089	0.807	0.911	0.915	1.371	0.922	nan	0.838	0.588	0.736	0.699	nan
12179	chr6	39152660	39158438	+	0	NA	intron (NM_001033430, intron 10 of 19)	L1_Mus2|LINE|L1	37076	NR_045813	75379	Mm.348014	NR_045813	ENSMUSG00000073144	4930599N23Rik	-	RIKEN cDNA 4930599N23 gene	ncRNA	5.666	8.035	2.581	7.856	3.351	3.472	6.627	7.090	4.153	10.999	3.852	3.116	7.531	8.456	6.923	nan	5.419	7.102	nan	1.785	2.546	nan	nan	3.527	nan
1505	chr10	80362822	80364255	+	0	NA	intron (NM_183152, intron 12 of 14)	B2_Mm2|SINE|B2	6099	NR_038088	100568459		NR_038088		Bc1	Gm24367	brain cytoplasmic RNA 1	ncRNA	6.679	10.217	2.804	7.012	3.240	3.445	5.073	5.118	3.629	6.821	4.912	3.160	4.344	5.343	5.746	6.892	4.688	4.927	3.671	1.181	3.535	3.924	3.136	4.049	11.736
13764	chr7	134255989	134256786	+	0	NA	Intergenic	MamRep137|DNA|TcMar-Tigger	-31290	NM_007400	11489	Mm.439714	NM_007400	ENSMUSG00000054555	Adam12	Mltna	a disintegrin and metallopeptidase domain 12 (meltrin alpha)	protein-coding	5.103	14.683	6.068	1.909	1.870	1.426	2.628	4.786	nan	1.886	1.572	0.676	2.273	3.522	1.843	1.634	1.551	1.591	2.583	2.844	0.638	2.380	5.997	2.153	2.596
12417	chr6	88014425	88016337	+	0	NA	intron (NM_001293652, intron 2 of 7)	intron (NM_001293652, intron 2 of 7)	4414	NM_001293654	19349	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	5.143	2.772	2.237	5.944	3.311	3.157	2.988	3.345	2.846	2.689	3.761	1.886	2.593	2.776	1.945	2.770	2.680	2.977	nan	2.277	2.229	3.781	2.763	2.273	3.302
13942	chr7	151597568	151604239	+	0	NA	Intergenic	Intergenic	6286068	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	nan	nan	0.318	nan	0.446	0.291	0.625	1.704	nan	0.559	1.158	0.561	0.747	0.689	1.136	1.109	0.414	1.259	2.715	1.252	0.996	4.421	nan	0.726	nan
13888	chr7	148516321	148517821	+	0	NA	Intergenic	Intergenic	3202236	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	4.019	nan	0.761	2.407	7.968	6.756	4.133	6.608	2.733	2.340	3.001	4.233	4.041	5.428	2.566	2.079	4.113	2.758	3.256	5.022	6.117	4.039	4.414	4.904	1.751
4746	chr14	63502430	63504101	+	0	NA	intron (NM_021480, intron 1 of 8)	intron (NM_021480, intron 1 of 8)	5827	NM_021480	58865	Mm.354229	NM_021480	ENSMUSG00000021953	Tdh	-	L-threonine dehydrogenase	protein-coding	2.586	2.142	0.996	3.891	2.019	1.123	0.896	3.583	1.352	1.478	1.342	0.674	3.041	3.638	3.097	1.958	0.927	2.204	1.107	nan	0.467	1.208	0.428	0.677	4.603
10806	chr4	140622743	140623931	+	0	NA	intron (NM_001290803, intron 1 of 28)	intron (NM_001290803, intron 1 of 28)	25419	NM_001112723	72754	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	nan	1.060	0.230	2.388	0.736	0.487	2.129	1.628	nan	1.068	0.208	0.481	0.992	3.732	3.080	2.498	0.447	2.798	3.063	0.507	0.762	3.649	1.149	0.488	3.895
10669	chr4	133956794	133958145	+	0	NA	Intergenic	L1MC5|LINE|L1	10522	NM_016957	15331	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	3.326	0.717	0.390	2.814	2.913	1.101	3.247	3.219	nan	1.530	1.688	1.937	2.827	4.198	2.490	3.457	3.915	2.151	4.006	3.183	1.780	4.092	4.287	3.772	3.551
2809	chr11	101307934	101311568	+	0	NA	Intergenic	MLT1C|LTR|ERVL-MaLR	-6500	NM_011192	19192	Mm.288477	NM_011192	ENSMUSG00000078652	Psme3	AA410043|AU020960|Ki|PA28gamma|REGgamma|pa28g	proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)	protein-coding	4.944	nan	4.344	6.355	6.655	7.408	3.431	5.110	3.872	3.425	3.701	2.448	3.624	4.804	4.297	5.023	4.686	4.503	4.408	nan	5.880	3.537	nan	nan	4.267
4844	chr14	75270670	75273145	+	0	NA	intron (NM_019775, intron 7 of 10)	RMER4A|LTR|ERVK	-12466	NM_026083	67302	Mm.74704	NM_026083	ENSMUSG00000022000	Zc3h13	2600010B19Rik|3110050K21Rik|4930570G11Rik|C87618	zinc finger CCCH type containing 13	protein-coding	5.053	3.946	2.430	4.971	4.733	3.269	3.896	3.511	4.270	5.163	1.837	1.386	4.435	5.839	5.599	5.622	2.519	6.049	0.995	0.676	1.113	0.797	0.636	0.733	8.794
11038	chr5	17504417	17507790	+	0	NA	Intergenic	Intergenic	29981	NM_027609	70935	Mm.332225	NM_027609	ENSMUSG00000058643	Speer4f1	4922502J04Rik|SPEER-4F|Speer4f	spermatogenesis associated glutamate (E)-rich protein 4F1	protein-coding	4.252	0.947	0.479	3.664	2.266	0.902	3.135	3.443	5.379	4.786	2.323	0.855	4.966	3.686	5.067	4.778	4.529	6.549	0.855	0.202	0.254	0.914	0.270	0.228	1.632
9271	chr3	50953925	50965438	+	0	NA	Intergenic	L1Md_T|LINE|L1	-264766	NM_009834	12457	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	1.078	0.876	0.608	0.796	0.653	0.479	1.176	1.036	0.762	0.871	0.904	1.074	0.773	0.785	0.809	0.923	0.870	0.936	5.345	4.530	4.322	7.983	6.129	6.186	0.988
1227	chr10	40159541	40168911	+	0	NA	Intergenic	Intergenic	-21972	NM_001114332	72472	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	3.081	1.379	0.943	1.826	0.790	0.436	1.812	2.137	3.555	2.165	4.832	6.629	1.966	1.812	1.728	1.900	1.957	2.838	2.375	1.518	1.080	1.625	1.284	0.790	1.611
13688	chr7	125747380	125749424	+	0	NA	intron (NM_001081022, intron 2 of 27)	intron (NM_001081022, intron 2 of 27)	40526	NM_001081022	233865	Mm.274389	NM_001081022	ENSMUSG00000032743	D430042O09Rik	Kiaa0556	RIKEN cDNA D430042O09 gene	protein-coding	4.385	0.570	0.325	2.284	1.436	1.037	6.303	8.470	2.518	3.354	1.873	2.186	7.558	4.481	3.981	5.129	3.861	3.469	0.992	0.841	0.839	1.832	0.778	0.901	5.268
12020	chr6	3217177	3218450	+	0	NA	Intergenic	RLTR14-int|LTR|ERV1	-70706	NR_036696	667335	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	2.096	0.576	0.476	1.572	0.626	0.377	4.783	3.674	1.153	1.130	0.396	0.283	3.989	3.341	5.846	9.791	5.416	3.858	0.262	0.174	0.232	0.492	0.075	0.074	nan
7766	chr19	41052323	41054944	+	0	NA	intron (NM_009345, intron 9 of 11)	intron (NM_009345, intron 9 of 11)	23480	NM_153520	226115	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	nan	8.889	6.097	0.914	0.248	0.165	0.333	nan	0.664	0.633	1.048	1.136	0.391	0.244	0.523	0.687	nan	0.599	0.390	0.850	0.795	0.479	0.450	0.433	0.737
7584	chr19	11591813	11597521	+	0	NA	intron (NM_026835, intron 3 of 6)	L1Md_A|LINE|L1	10137	NM_026835	68774	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	1.973	8.027	3.012	1.977	0.759	0.386	0.994	0.924	nan	1.511	0.666	0.581	0.712	0.632	1.133	nan	1.337	1.708	0.498	0.771	0.838	0.382	0.472	0.206	0.914
12677	chr6	121108087	121110701	+	0	NA	intron (NM_001270475, intron 1 of 31)	intron (NM_001270475, intron 1 of 31)	21628	NM_001270475	194401	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	0.620	0.512	0.746	0.606	0.524	0.283	0.779	1.156	0.628	0.765	3.275	1.925	0.573	nan	0.657	0.722	0.738	0.653	4.988	5.611	2.509	4.970	8.762	5.330	0.482
3478	chr12	80176166	80178352	+	0	NA	exon (NM_134156, exon 13 of 21)	exon (NM_134156, exon 13 of 21)	-44415	NR_033514	69548	Mm.269712	NR_033514	ENSMUSG00000097729	2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	2.851	0.738	0.269	0.750	0.151	0.112	7.543	3.338	1.082	0.798	0.793	0.391	8.267	3.237	6.198	4.733	1.862	3.049	0.956	0.118	0.288	1.235	0.345	0.262	1.825
8606	chr2	121400764	121402582	+	0	NA	intron (NM_153075, intron 7 of 12)	intron (NM_153075, intron 7 of 12)	12119	NM_153075	212670	Mm.384318	NM_153075	ENSMUSG00000033486	Catsper2	-	cation channel, sperm associated 2	protein-coding	4.046	0.837	0.771	2.431	1.492	0.476	3.658	1.967	3.672	3.544	2.741	1.336	6.738	5.410	4.264	4.719	3.830	2.546	2.284	0.590	0.539	0.864	0.803	0.409	4.450
14333	chr8	74224060	74227730	+	0	NA	Intergenic	L1VL2|LINE|L1	-647279	NM_027837	71597	Mm.158735	NM_027837	ENSMUSG00000031621	Isx	9130012O13Rik|Pix-1	intestine specific homeobox	protein-coding	2.060	nan	0.988	4.512	3.917	2.368	7.441	7.258	nan	4.270	6.698	3.884	8.094	7.095	4.704	3.713	4.598	3.978	1.154	1.045	0.903	nan	1.154	1.054	nan
11967	chr5	148772622	148774228	+	0	NA	Intergenic	RMER4B|LTR|ERVK	-4538	NR_131106	78015	Mm.243839	NR_131106	ENSMUSG00000085740	4930505K14Rik	-	RIKEN cDNA 4930505K14 gene	ncRNA	3.473	0.695	0.519	1.883	2.080	1.022	0.965	1.073	2.789	2.740	1.448	1.340	2.601	3.197	1.265	2.106	1.163	4.195	1.671	1.377	0.597	0.352	2.131	1.800	1.843
6586	chr17	35271538	35273019	+	0	NA	Intergenic	Intergenic	9155	NM_001267808	14980	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	13.647	17.151	6.149	10.547	6.628	4.291	14.030	10.679	6.699	13.780	10.127	4.156	10.227	14.706	12.441	14.738	12.251	10.180	6.593	5.162	4.889	7.978	6.603	5.511	18.253
13679	chr7	125381492	125385512	+	0	NA	Intergenic	Intergenic	14641	NM_001145759	75861	Mm.349600	NM_001145759		4930571K23Rik	AI428146	RIKEN cDNA 4930571K23 gene	protein-coding	2.265	1.304	0.966	2.101	4.472	3.739	1.653	2.961	2.266	2.074	1.311	1.134	2.391	2.659	nan	1.628	2.111	2.320	1.320	1.135	0.957	0.679	1.492	1.493	0.887
4032	chr13	42198102	42200536	+	0	NA	Intergenic	Intergenic	-102157	NM_010104	13614	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	6.471	nan	4.308	3.311	3.470	1.869	4.391	4.839	nan	4.026	1.887	1.375	3.994	5.409	4.125	nan	3.840	nan	4.940	4.271	3.046	5.167	4.200	3.291	nan
4877	chr14	77274162	77277255	+	0	NA	intron (NM_001253759, intron 2 of 19)	intron (NM_001253759, intron 2 of 19)	118945	NM_172813	239188	Mm.441158	NM_172813	ENSMUSG00000022012	Enox1	B230207J08|D230005D02Rik	ecto-NOX disulfide-thiol exchanger 1	protein-coding	5.666	0.805	0.740	4.408	5.247	2.866	6.912	10.945	5.768	5.948	3.483	3.492	8.167	8.120	8.865	8.799	5.743	6.293	4.601	1.680	1.002	2.931	4.256	3.484	4.945
6635	chr17	44324118	44331607	+	0	NA	Intergenic	Intergenic	139290	NM_172621	224796	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg	chloride intracellular channel 5	protein-coding	4.215	1.699	0.740	7.170	3.632	1.927	4.770	3.538	3.800	4.261	0.978	1.605	4.632	7.124	6.497	7.925	4.756	7.962	0.806	1.079	0.875	0.857	0.847	0.628	7.323
14857	chr9	13555655	13557919	+	0	NA	Intergenic	Intergenic	-63202	NM_001013813	270118	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like 2 (Drosophila)	protein-coding	3.962	1.304	1.013	2.877	3.469	1.640	1.847	2.139	2.515	2.054	1.677	4.421	1.477	2.024	1.265	1.731	1.694	2.899	3.366	4.009	3.768	3.027	2.656	3.119	1.392
12597	chr6	113624801	113626734	+	0	NA	intron (NM_009507, intron 1 of 2)	ORR1C1|LTR|ERVL-MaLR	1746	NM_009507	22346	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	4.271	2.221	1.323	6.059	7.521	7.169	7.465	8.002	5.059	5.300	3.912	3.641	7.389	7.336	7.411	9.146	6.443	5.151	1.609	1.280	1.430	1.177	nan	1.399	6.727
12938	chr7	16971506	16973156	+	0	NA	Intergenic	Intergenic	12536	NM_001007569	71691	Mm.275673	NM_001007569	ENSMUSG00000041141	Pnmal1	0710005I19Rik	PNMA-like 1	protein-coding	6.281	8.532	4.716	4.431	4.884	3.839	6.598	5.601	2.965	5.434	4.817	2.697	3.450	6.739	4.851	5.021	5.875	4.473	4.489	5.914	5.712	3.376	5.928	5.877	8.035
2928	chr11	107962346	107963943	+	0	NA	intron (NM_011101, intron 13 of 16)	intron (NM_011101, intron 13 of 16)	-33704	NR_106082	102465705		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	2.601	1.016	0.748	1.690	2.284	1.674	5.002	3.461	2.413	3.094	0.825	1.693	3.198	4.911	5.159	4.443	2.275	5.081	1.768	1.002	0.517	2.296	1.171	0.752	3.664
12243	chr6	52550235	52563283	+	0	NA	intron (NM_145567, intron 5 of 7)	intron (NM_145567, intron 5 of 7)	64308	NR_046049	74304	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	6.612	0.721	0.610	3.222	3.298	2.348	8.897	7.670	5.871	7.362	2.828	2.738	10.644	9.674	8.196	10.731	9.326	nan	nan	0.669	0.564	0.504	0.578	0.374	5.915
11792	chr5	135662269	135664722	+	0	NA	Intergenic	Intergenic	-25650	NM_008898	18984	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	9.162	16.876	6.331	12.050	4.351	3.279	8.699	8.161	6.232	12.139	8.482	5.557	7.073	10.439	9.493	10.932	8.304	8.624	8.259	4.721	4.940	7.807	nan	8.158	14.489
2193	chr11	53360280	53362250	+	0	NA	intron (NM_033565, intron 1 of 20)	intron (NM_033565, intron 1 of 20)	10498	NM_033565	93736	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	2.816	0.617	0.134	3.807	1.596	1.103	2.463	3.088	3.721	3.523	0.663	0.612	2.944	5.270	3.693	5.877	4.734	4.144	nan	0.742	0.249	1.345	0.707	0.339	3.769
3522	chr12	81534595	81537531	+	0	NA	Intergenic	Lx4A|LINE|L1	-3152	NM_001309848	105940408		NM_001309847	ENSMUSG00000021139	Synj2bp-cox16	ARIP2a	Synj2bp-cox16 readthrough	protein-coding	11.413	11.854	5.992	7.370	6.890	5.118	9.935	8.453	4.439	9.474	5.999	3.827	6.563	8.994	7.631	9.860	10.656	6.651	6.164	4.632	6.193	6.511	6.160	7.511	15.638
2636	chr11	93566442	93571143	+	0	NA	intron (NM_028296, intron 4 of 8)	(T)n|Simple_repeat|Simple_repeat	316974	NM_001013375	217109	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	0.294	nan	0.344	0.255	0.102	0.051	0.257	0.207	0.237	0.249	0.267	0.148	0.094	0.167	0.178	0.456	nan	0.414	3.682	4.027	2.503	4.388	3.751	nan	0.288
8680	chr2	131853254	131856960	+	0	NA	3' UTR (NM_001166206, exon 2 of 2)	3' UTR (NM_001166206, exon 2 of 2)	4640	NM_001166206	71995	Mm.22	NM_028045	ENSMUSG00000037482	Erv3	1600014E20Rik|AA389086|AI426069|AI448024|D19349	endogenous retroviral sequence 3	protein-coding	6.239	17.860	4.968	8.467	3.487	1.780	3.798	2.437	6.650	13.055	4.344	0.851	5.041	9.228	6.292	8.525	4.197	8.963	nan	1.483	1.536	1.951	1.559	1.249	10.038
277	chr1	71937705	71948776	+	0	NA	Intergenic	Intergenic	55128	NR_027659	667931	Mm.214128	NR_027658	ENSMUSG00000099707	Gm8883	EG667931|Gm554	predicted gene 8883	ncRNA	4.674	0.745	0.468	1.903	3.452	2.018	3.821	4.599	4.386	6.463	2.751	2.436	7.300	6.733	4.517	nan	5.668	nan	0.687	0.646	0.417	0.732	0.821	0.495	4.189
12096	chr6	28772810	28774445	+	0	NA	intron (NM_019776, intron 15 of 23)	intron (NM_019776, intron 15 of 23)	58120	NM_138682	192198	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	1.863	1.749	1.145	1.611	2.561	1.810	4.391	2.743	2.517	2.125	3.043	1.694	3.048	4.604	3.270	5.178	2.792	2.046	nan	1.350	1.161	1.577	1.190	0.829	1.959
9053	chr2	169413993	169416695	+	0	NA	Intergenic	Intergenic	-218302	NM_080455	228911	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0.987	0.667	0.123	0.553	0.211	0.183	3.479	4.602	2.009	1.390	8.010	4.921	2.461	nan	2.198	2.273	1.571	nan	nan	0.442	0.227	0.525	0.572	0.520	nan
13586	chr7	117430841	117435058	+	0	NA	intron (NM_175645, intron 1 of 11)	intron (NM_175645, intron 1 of 11)	51970	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	2.615	4.264	1.654	2.314	5.349	2.821	1.607	6.187	1.992	2.967	2.864	3.819	1.845	2.756	3.783	2.781	1.191	2.675	2.079	1.096	1.097	2.184	1.183	0.960	2.612
1183	chr10	24313963	24317426	+	0	NA	Intergenic	Intergenic	92177	NM_021509	59012	Mm.285934	NM_021509	ENSMUSG00000020000	Moxd1	3230402N08Rik|MNCb-5203	monooxygenase, DBH-like 1	protein-coding	5.388	1.805	0.337	4.477	1.318	0.921	3.304	2.214	3.268	4.424	6.864	4.750	2.794	3.850	2.420	3.542	2.615	3.595	1.175	0.792	0.994	1.652	0.497	0.601	4.574
8989	chr2	165703094	165716361	+	0	NA	intron (NM_001271962, intron 5 of 15)	intron (NM_001271962, intron 5 of 15)	54429	NM_010165	14049	Mm.282719	NM_010165	ENSMUSG00000017897	Eya2	Eab1	EYA transcriptional coactivator and phosphatase 2	protein-coding	9.126	10.278	4.753	7.394	3.740	1.977	7.034	11.464	4.461	5.933	6.611	3.329	7.912	9.154	7.522	9.491	8.374	nan	nan	5.751	4.420	7.002	6.720	5.249	7.354
8568	chr2	119060767	119069934	+	0	NA	intron (NM_029617, intron 6 of 23)	B1_Mus2|SINE|Alu	18231	NM_029617	76464	Mm.202518	NM_029617	ENSMUSG00000027326	Knl1	2310043D08Rik|5730505K17Rik|Casc5	kinetochore scaffold 1	protein-coding	5.809	1.473	0.539	3.377	1.891	1.297	6.134	8.726	2.804	4.601	3.068	2.474	nan	5.198	5.955	7.802	4.681	6.580	4.660	1.588	1.493	3.950	3.617	3.315	10.512
2747	chr11	98601335	98616533	+	0	NA	Intergenic	Intergenic	10643	NM_001195544	192852	Mm.342821	NM_001195544	ENSMUSG00000086545	Lrrc3c	Gm12	leucine rich repeat containing 3C	protein-coding	4.418	nan	1.001	5.013	2.862	1.665	4.096	5.137	2.541	4.225	2.350	1.866	3.406	5.607	4.408	5.878	nan	4.915	3.053	nan	1.549	3.447	nan	nan	5.152
15509	chr9	108889961	108901884	+	0	NA	Intergenic	Intergenic	-18697	NM_027066	69384	Mm.158271	NM_027066	ENSMUSG00000025652	Tmem89	1700024B07Rik	transmembrane protein 89	protein-coding	7.259	2.371	1.038	4.782	2.647	1.577	5.870	6.754	nan	nan	2.897	1.247	6.119	7.393	6.193	7.776	4.162	6.195	2.339	1.637	1.281	1.879	2.219	1.675	9.183
7556	chr19	10120490	10125685	+	0	NA	Intergenic	Intergenic	-21584	NM_019699	56473	Mm.38901	NM_019699	ENSMUSG00000024665	Fads2	2900042M13Rik|Fadsd2	fatty acid desaturase 2	protein-coding	2.511	2.135	1.184	2.911	2.514	1.471	3.054	4.367	2.971	2.913	1.615	1.974	2.013	2.986	3.169	3.868	3.587	4.262	0.413	0.729	0.507	0.754	0.658	0.354	3.806
14819	chr8	129300262	129303900	+	0	NA	Intergenic	Intergenic	38451	NR_144501	102635552		NM_001346808		Gm32856	-	predicted gene, 32856	protein-coding	4.111	3.018	1.906	4.317	2.092	1.085	nan	nan	4.615	4.330	1.583	1.802	2.993	4.057	3.941	6.776	4.014	6.442	nan	0.715	0.455	nan	0.580	nan	5.503
11780	chr5	135221182	135223934	+	0	NA	intron (NM_011714, intron 8 of 18)	intron (NM_011714, intron 8 of 18)	28489	NM_010246	14371	Mm.6256	NM_010246	ENSMUSG00000049551	Fzd9	mfz9	frizzled class receptor 9	protein-coding	3.004	2.740	0.492	6.674	0.924	0.697	0.553	0.806	1.588	2.274	1.473	0.482	0.709	1.722	1.512	1.931	0.737	2.783	1.677	1.652	1.502	3.384	nan	0.741	2.470
11155	chr5	34176988	34178315	+	0	NA	exon (NM_010753, exon 5 of 6)	exon (NM_010753, exon 5 of 6)	-8125	NM_001289803	272158	Mm.319286	NM_181857	ENSMUSG00000045102	Poln	POL4P	DNA polymerase N	protein-coding	2.015	2.113	1.355	1.873	2.963	2.735	1.671	1.847	2.368	2.680	0.742	0.754	1.780	3.087	nan	2.411	1.821	nan	0.753	0.983	0.647	0.803	1.039	1.409	1.354
2215	chr11	54600547	54601581	+	0	NA	intron (NM_001252497, intron 1 of 11)	B1_Mus2|SINE|Alu	4918	NM_001252497	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	8.516	18.299	4.217	16.263	3.637	1.379	5.667	6.919	5.512	15.345	6.614	3.643	5.357	nan	10.824	12.269	4.489	11.735	nan	1.745	4.335	8.651	3.005	4.312	17.549
8107	chr2	31002239	31003572	+	0	NA	intron (NM_028846, intron 5 of 24)	intron (NM_028846, intron 5 of 24)	20626	NM_028846	74270	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	6.038	2.857	2.613	4.216	3.605	3.028	3.281	8.077	3.073	4.296	2.476	0.998	3.484	4.121	2.845	2.991	7.034	2.685	0.871	1.268	1.952	0.686	0.687	0.893	3.657
2671	chr11	94929771	94943221	+	0	NA	intron (NM_007742, intron 1 of 50)	intron (NM_007742, intron 1 of 50)	272	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	5.586	nan	0.428	6.778	3.573	1.900	6.477	6.904	4.003	4.877	5.129	4.592	5.837	7.727	6.430	7.797	3.938	7.696	3.524	nan	1.456	4.892	nan	nan	7.992
15121	chr9	57480847	57497321	+	0	NA	Intergenic	B1_Mur1|SINE|Alu	-15018	NM_133982	102614	Mm.274421	NM_133982	ENSMUSG00000062309	Rpp25	AI851155	ribonuclease P/MRP 25 subunit	protein-coding	5.399	15.018	6.179	5.152	1.841	1.333	4.178	5.346	3.340	4.325	3.836	2.277	3.973	3.999	4.593	5.314	3.118	4.654	2.966	2.745	2.568	3.148	2.391	2.320	6.054
12974	chr7	20084416	20087762	+	0	NA	Intergenic	IAPEY3-int|LTR|ERVK	-15069	NM_001166736	667067	Mm.480264	NM_001166736	ENSMUSG00000095201	Vmn1r91	EG667067|Gm8442	vomeronasal 1 receptor 91	protein-coding	2.291	0.679	0.626	1.465	1.858	1.707	5.574	4.381	1.170	1.650	1.116	1.196	3.437	2.384	1.539	1.632	2.376	1.213	0.732	0.929	1.652	0.394	0.740	0.786	1.264
7818	chr19	46111862	46121610	+	0	NA	Intergenic	L1M2|LINE|L1	-15163	NM_007703	12686	Mm.21806	NM_007703	ENSMUSG00000038754	Elovl3	CIN-2|Cig30	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3	protein-coding	7.857	7.427	2.635	nan	4.369	3.001	9.328	9.081	3.930	6.760	4.896	2.511	5.503	8.601	7.538	8.567	8.160	nan	2.349	2.579	2.904	4.085	3.920	3.622	13.498
8372	chr2	75509174	75510467	+	0	NA	Intergenic	Intergenic	-65641	NR_040635	77269	Mm.389278	NR_040635		9430019J16Rik	-	RIKEN cDNA 9430019J16 gene	ncRNA	1.660	0.769	0.964	nan	1.844	2.395	3.160	2.659	2.682	1.364	1.747	1.357	2.169	3.162	nan	1.757	3.026	1.686	1.560	0.843	1.349	0.291	1.603	2.423	1.321
5497	chr15	83080318	83082539	+	0	NA	Intergenic	Intergenic	-18777	NM_023475	68607	Mm.30056	NM_023475	ENSMUSG00000058586	Serhl	0610008B10Rik|1110019M09Rik|AU019786	serine hydrolase-like	protein-coding	3.584	10.730	4.893	8.727	3.101	1.691	nan	1.624	2.689	3.726	0.873	1.283	1.061	2.023	nan	nan	nan	3.382	nan	1.855	2.546	4.716	3.207	4.015	3.009
2417	chr11	71942750	71950732	+	0	NA	Intergenic	Intergenic	-6619	NR_045942	73816	Mm.390391	NR_045942	ENSMUSG00000085528	4930401O10Rik	-	RIKEN cDNA 4930401O10 gene	ncRNA	4.506	0.736	0.251	7.177	4.053	1.976	6.705	6.273	4.836	8.074	6.312	3.669	6.485	9.198	6.188	9.673	4.191	8.433	1.193	1.052	0.768	1.167	nan	0.773	7.590
9032	chr2	167643777	167655881	+	0	NA	intron (NM_145538, intron 2 of 5)	PB1D10|SINE|Alu	11715	NM_145538	407243	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	3.614	1.741	0.535	4.386	2.316	1.172	3.012	3.787	2.376	3.026	2.865	1.753	2.999	3.048	3.339	4.767	2.455	4.147	nan	1.972	1.552	5.447	2.103	1.387	nan
8402	chr2	84226741	84228155	+	0	NA	Intergenic	Intergenic	197818	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	4.286	2.156	0.540	3.349	2.964	1.937	1.385	7.018	2.597	2.325	1.784	1.504	1.804	2.729	1.489	2.626	2.340	2.730	0.681	1.412	0.674	0.412	0.589	0.811	2.400
11795	chr5	136124124	136129134	+	0	NA	intron (NM_027891, intron 11 of 14)	RodERV21-int|LTR|ERV1	9445	NM_027891	71735	Mm.425292	NM_027891	ENSMUSG00000029703	Lrwd1	1200011O22Rik|AU042569|AW548074|Orca	leucine-rich repeats and WD repeat domain containing 1	protein-coding	3.223	0.639	0.589	3.352	3.714	3.005	4.239	3.820	3.688	3.408	2.830	2.568	5.370	5.731	3.243	4.175	4.891	3.071	2.578	1.479	1.455	1.014	nan	4.064	2.681
10320	chr4	102101295	102108425	+	0	NA	Intergenic	Intergenic	118020	NM_001085520	381536	Mm.297685	NM_001085520	ENSMUSG00000078625	Gm12789	OTTMUSG00000008445	predicted gene 12789	protein-coding	0.408	nan	0.542	0.466	0.218	0.104	0.226	0.256	nan	nan	1.098	0.253	0.194	0.211	nan	0.432	0.221	0.405	1.726	4.000	2.167	nan	1.356	1.043	0.335
1369	chr10	66645862	66657376	+	0	NA	Intergenic	RLTR23|LTR|ERV1	268765	NR_138560	68488	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	6.699	5.188	3.354	4.442	4.972	2.745	4.166	4.981	4.759	5.114	3.249	2.704	4.777	5.625	4.642	4.920	6.357	5.408	2.895	2.524	1.535	2.004	1.802	1.369	3.646
8535	chr2	116815218	116825977	+	0	NA	Intergenic	Intergenic	-58094	NM_026104	67356	Mm.131623	NM_026104	ENSMUSG00000027355	Tmco5	1700095F04Rik|Tmco5a	transmembrane and coiled-coil domains 5	protein-coding	4.742	0.866	0.644	2.007	1.732	1.545	6.200	4.324	3.619	3.742	1.693	0.657	nan	6.670	4.945	nan	4.518	5.148	0.675	0.528	0.451	0.420	0.494	0.292	nan
13704	chr7	127262790	127265158	+	0	NA	Intergenic	RLTR14|LTR|ERV1	-3307	NM_023203	66422	Mm.29898	NM_023203	ENSMUSG00000042462	Dctpp1	2410015N17Rik|AI854235|RS21-C6	dCTP pyrophosphatase 1	protein-coding	2.704	0.741	0.496	2.922	1.604	0.592	1.224	nan	2.227	1.744	0.880	0.744	2.181	2.495	2.733	3.483	2.498	3.437	0.511	0.255	0.333	0.391	0.243	0.277	6.329
11917	chr5	143690273	143694558	+	0	NA	intron (NM_011182, intron 4 of 12)	intron (NM_011182, intron 4 of 12)	39865	NM_029749	76800	Mm.259620	NM_029749	ENSMUSG00000051306	Usp42	2410140K03Rik|3110031A07Rik|A630018G05Rik|D5Ertd591e	ubiquitin specific peptidase 42	protein-coding	7.616	12.185	6.443	7.494	6.853	5.833	6.554	6.976	nan	5.141	4.033	2.986	4.651	7.700	6.493	nan	4.133	6.778	1.094	2.092	2.403	1.297	1.104	1.561	8.536
10700	chr4	134953643	134955771	+	0	NA	Intergenic	Intergenic	23727	NM_026780	68592	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	nan	1.405	0.598	1.083	0.769	0.576	3.275	4.829	nan	1.279	1.963	2.332	2.499	2.333	2.731	3.355	1.898	2.007	2.021	0.441	1.354	2.161	nan	1.293	4.769
54	chr1	21950370	21951979	+	0	NA	intron (NM_001310477, intron 1 of 12)	intron (NM_001310477, intron 1 of 12)	10768	NM_001160139	226922	Mm.336519	NM_023872	ENSMUSG00000028033	Kcnq5	7730402H11|9230107O05Rik|AA589396|D1Mgi1	potassium voltage-gated channel, subfamily Q, member 5	protein-coding	nan	14.466	4.655	1.756	0.284		0.488	0.363	0.265	1.068	1.045	0.441	0.178	0.598	0.753	0.761	0.450	0.742	5.141	2.919	3.718	6.196	3.273	4.218	1.209
1151	chr10	20125695	20133077	+	0	NA	intron (NM_008580, intron 25 of 29)	L1MC4a|LINE|L1	-19534	NM_008635	17761	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	4.744	0.475	0.328	3.510	4.700	2.211	2.339	3.275	nan	5.589	0.866	0.612	4.664	7.024	5.042	5.673	3.658	6.317	0.678	0.489	0.371	0.726	0.505	0.239	nan
7607	chr19	16278714	16281668	+	0	NA	intron (NM_008139, intron 2 of 6)	intron (NM_008139, intron 2 of 6)	34813	NR_105832	102465218		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	5.642	1.425	0.456	4.164	4.477	1.987	5.398	5.018	4.016	5.221	4.409	1.981	5.885	8.452	5.948	5.655	5.655	6.792	0.711	0.774	0.329	1.195	1.147	0.356	5.026
3347	chr12	57347824	57370383	+	0	NA	intron (NM_001164370, intron 7 of 9)	intron (NM_001164370, intron 7 of 9)	128678	NM_001164370	73490	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	6.421	nan	0.393	3.255	4.324	2.075	7.384	7.221	5.348	6.350	1.987	0.912	9.418	9.137	nan	nan	9.602	nan	1.381	2.464	1.279	4.170	2.265	1.508	11.230
10230	chr4	83062950	83064574	+	0	NA	Intergenic	Intergenic	-11595	NM_001198811	329872	Mm.242337	NM_177863	ENSMUSG00000059049	Frem1	BC037594|D430009N09|D630008K06|crf11|eye<m02Jus>|eyes2|heb|qbrick	Fras1 related extracellular matrix protein 1	protein-coding	6.573	8.835	2.364	7.426	2.531	0.593	4.416	4.895	nan	5.820	5.126	2.773	5.579	6.321	7.430	7.354	3.154	7.668	6.704	nan	4.271	17.996	2.716	2.099	10.442
1204	chr10	30485031	30489410	+	0	NA	Intergenic	L1VL4|LINE|L1	113529	NM_028604	73681	Mm.294503	NM_028604	ENSMUSG00000019792	Trmt11	2410075D05Rik|3110045I18Rik|AW213713	tRNA methyltransferase 11	protein-coding	5.556	0.682	0.551	3.183	6.018	4.722	2.582	3.224	2.761	3.615	0.726	0.841	3.772	5.625	2.294	4.253	6.078	3.133	0.888	2.326	1.781	0.497	1.915	1.712	2.179
8525	chr2	113678997	113689623	+	0	NA	promoter-TSS (NM_001287818)	promoter-TSS (NM_001287818)	-780	NM_001287818	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	6.059	3.298	2.127	2.254	1.060	0.615	5.150	5.702	2.722	2.317	1.942	1.517	6.095	4.379	5.126	6.186	7.059	4.164	3.063	1.924	0.996	1.876	3.695	2.428	nan
15211	chr9	65590453	65593489	+	0	NA	intron (NM_172453, intron 7 of 11)	intron (NM_172453, intron 7 of 11)	4766	NM_172453	208084	Mm.211032	NM_172453	ENSMUSG00000041064	Pif1	4631410M14|AI449441	PIF1 5'-to-3' DNA helicase	protein-coding	3.734	0.761	0.548	3.719	2.044	1.351	2.046	3.029	4.054	4.024	2.137	1.756	3.822	4.779	3.461	4.198	2.701	3.615	nan	1.230	0.841	2.896	1.146	0.819	3.772
14710	chr8	124173599	124178330	+	0	NA	Intergenic	Intergenic	-55430	NM_139272	108148	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	4.217	nan	0.361	6.648	1.433	0.752	nan	nan	2.856	7.543	2.170	1.820	3.821	4.055	5.516	6.966	2.744	5.942	nan	1.785	1.824	nan	1.990	nan	11.083
2520	chr11	78931273	78933461	+	0	NA	intron (NM_001313921, intron 4 of 25)	B1_Mus1|SINE|Alu	7076	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	4.307	4.116	1.719	2.600	3.654	2.382	nan	2.272	1.816	2.202	2.225	1.202	1.342	2.350	nan	nan	1.327	nan	3.896	2.967	nan	4.954	3.919	3.839	2.259
12848	chr6	145802814	145815858	+	0	NA	intron (NM_027760, intron 1 of 3)	ORR1E-int|LTR|ERVL-MaLR	953	NM_027760	71323	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	nan	3.241	1.056	nan	1.608	0.749	0.920	nan	1.698	nan	3.808	1.608	nan	2.780	2.426	nan	1.464	2.427	8.967	nan	2.576	nan	5.589	4.708	nan
7896	chr19	56661820	56664225	+	0	NA	Intergenic	Intergenic	-59350	NM_007419	11554	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	4.063	nan	0.844	6.148	3.251	1.846	4.281	5.574	3.482	3.300	2.078	1.056	3.826	5.509	nan	5.749	4.286	7.189	1.661	0.865	0.569	2.397	0.990	0.909	6.166
88	chr1	34906101	34909712	+	0	NA	Intergenic	Lx|LINE|L1	57947	NM_145516	226971	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	13.205	8.053	4.184	6.691	10.181	4.911	12.355	9.283	6.003	8.125	6.487	5.854	5.539	9.236	6.433	11.088	8.929	7.511	5.386	4.229	2.581	3.067	7.304	5.184	8.197
1009	chr1	188876093	188878718	+	0	NA	intron (NM_021408, intron 60 of 70)	MTD|LTR|ERVL-MaLR	130435	NM_172650	226823	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	5.741	0.843	0.382	3.142	2.071	0.887	2.373	1.898	3.229	4.879	0.553	0.300	4.775	4.907	5.116	11.296	4.458	6.222	1.980	0.906	0.453	2.054	0.532	0.329	7.840
11484	chr5	101072444	101073470	+	0	NA	Intergenic	Intergenic	226728	NM_172715	231510	Mm.271911	NM_172715	ENSMUSG00000029314	Agpat9	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|GPAT-3|Gpat3|mGPAT3	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding	3.825	10.300	4.199	1.844	1.195	0.371	3.720	4.689	1.890	1.614	2.176	2.623	3.309	4.428	3.203	4.589	4.423	2.850	3.804	4.851	2.944	2.903	3.011	2.418	5.111
13504	chr7	107879912	107882091	+	0	NA	Intergenic	Lx5|LINE|L1	-21718	NM_146774	258770	Mm.389960	NM_146774	ENSMUSG00000073893	Olfr472	MOR204-5	olfactory receptor 472	protein-coding	3.443	1.984	2.509	2.354	4.843	2.124	4.117	4.168	2.119	2.067	1.441	1.456	4.945	6.246	3.675	nan	3.323	3.225	1.898	1.780	1.187	1.594	1.886	1.181	3.226
10227	chr4	82960701	82962934	+	0	NA	intron (NM_177863, intron 20 of 35)	intron (NM_177863, intron 20 of 35)	59285	NM_177863	329872	Mm.242337	NM_177863	ENSMUSG00000059049	Frem1	BC037594|D430009N09|D630008K06|crf11|eye<m02Jus>|eyes2|heb|qbrick	Fras1 related extracellular matrix protein 1	protein-coding	12.996	14.263	5.235	12.490	8.349	6.083	6.639	10.996	9.653	9.880	7.657	6.292	9.211	13.163	10.539	10.429	6.562	10.697	9.198	9.373	7.912	20.639	6.715	4.864	12.142
8360	chr2	73223165	73225287	+	0	NA	Intergenic	MLT1H2-int|LTR|ERVL-MaLR	-9779	NM_025942	67059	Mm.22661	NM_025942	ENSMUSG00000027108	Ola1	2510025G09Rik|2810405J23Rik|2810409H07Rik|Gtpbp9|PTD004	Obg-like ATPase 1	protein-coding	nan	6.687	1.527	5.793	1.134	0.925	2.873	3.879	3.489	4.375	2.770	0.875	5.289	4.707	nan	6.184	4.506	5.238	3.482	1.303	0.923	4.769	1.546	1.712	7.482
13516	chr7	108369878	108381338	+	0	NA	Intergenic	MMERVK9E_I-int|LTR|ERVK	8116	NM_146737	258732	Mm.377662	NM_146737	ENSMUSG00000109631	Olfr494	MOR204-10	olfactory receptor 494	protein-coding	1.548	6.815	4.757	1.584	1.271	0.859	1.043	1.515	1.494	1.276	0.668	0.902	1.020	nan	1.276	nan	1.757	nan	nan	1.368	0.896	0.785	1.305	1.096	0.857
11690	chr5	123378565	123381812	+	0	NA	Intergenic	Intergenic	-14610	NM_133917	208104	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	5.503	0.605	0.832	3.635	5.738	5.672	4.475	4.451	5.420	4.335	1.130	2.249	4.994	5.572	nan	5.124	4.762	nan	nan	1.365	1.467	0.905	nan	1.270	nan
12119	chr6	31072730	31079646	+	0	NA	Intergenic	Intergenic	-13095	NR_029532	387223		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	7.216	8.333	3.666	5.440	4.899	2.333	6.138	6.719	6.336	6.035	5.802	3.651	7.558	8.502	8.331	9.475	7.240	7.874	nan	2.592	1.492	5.609	1.595	1.077	6.995
403	chr1	89516281	89524930	+	0	NA	intron (NM_001037136, intron 1 of 16)	intron (NM_001037136, intron 1 of 16)	65794	NM_001037136	347722	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	5.002	12.692	4.347	5.783	2.006	0.936	1.322	1.414	2.461	3.239	2.808	0.968	1.379	2.365	2.700	3.245	1.711	3.189	0.899	1.194	0.841	nan	0.462	0.304	3.439
4825	chr14	71058325	71059848	+	0	NA	Intergenic	L1Md_T|LINE|L1	168979	NM_001302094	14586	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	5.121	4.658	1.279	1.859	1.778	0.653	3.689	6.471	4.290	4.692	3.386	2.276	3.060	5.522	4.577	6.664	3.295	5.861	3.614	nan	0.594	4.464	2.968	1.532	3.605
7117	chr18	34663541	34667305	+	0	NA	Intergenic	Intergenic	-13687	NM_178347	52563	Mm.196638	NM_178347	ENSMUSG00000024370	Cdc23	6030435O18|D18Ertd243e	CDC23 cell division cycle 23	protein-coding	9.337	7.302	3.103	6.208	5.450	5.306	7.143	8.646	3.989	7.554	4.249	3.031	6.846	7.620	7.262	7.540	6.301	6.669	3.944	2.261	3.943	4.300	3.432	4.443	11.029
10189	chr4	70182167	70183434	+	0	NA	Intergenic	RLTR10|LTR|ERVK	227635	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	4.186	0.620	0.104	2.029	1.854	0.788	2.923	1.769	2.484	2.395	1.266	0.623	3.371	3.732	2.605	3.190	2.604	3.430	3.355	3.984	2.400	3.982	1.712	1.023	1.889
3438	chr12	76408956	76411930	+	0	NA	Intergenic	B3|SINE|B2	6073	NM_008301	15512	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	4.109	2.715	0.631	6.832	1.375	0.369	1.748	1.673	2.261	2.535	1.095	0.945	0.994	nan	1.864	3.317	1.618	3.355	2.971	0.919	1.192	4.673	0.922	0.694	4.095
13209	chr7	54043120	54046504	+	0	NA	Intergenic	L1Md_F2|LINE|L1	-152923	NR_105746	102466619		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	8.663	2.336	2.160	5.912	6.063	5.297	8.325	11.726	7.765	8.524	2.104	1.810	10.941	11.782	7.326	6.940	8.835	9.268	1.124	0.974	0.675	0.764	0.993	0.690	7.604
9856	chr3	144510402	144512720	+	0	NA	intron (NM_011828, intron 1 of 6)	intron (NM_011828, intron 1 of 6)	58655	NM_011828	23908	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	0.321	0.427	0.279	0.289	0.041		0.572	0.239	0.284	0.191	0.621	0.306	0.349	0.376	0.340	0.433	0.435	0.538	8.498	3.125	1.418	5.090	4.932	2.505	0.408
13256	chr7	72611038	72616043	+	0	NA	Intergenic	Lx5|LINE|L1	-306945	NM_001024703	244049	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	7.083	0.639	0.408	6.884	8.600	6.189	6.805	11.165	7.871	6.661	6.667	5.677	7.620	9.785	6.280	5.535	5.825	8.500	0.823	1.449	1.287	0.815	0.888	0.558	6.292
11164	chr5	35348936	35356316	+	0	NA	Intergenic	Lx5c|LINE|L1	-8927	NR_046060	74429	Mm.399502	NR_046060	ENSMUSG00000106762	4930478P22Rik	4933405A14Rik	RIKEN cDNA 4930478P22 gene	ncRNA	0.724	1.438	0.687	1.330	0.542	0.401	0.750	1.885	1.181	1.002	0.822	1.025	0.587	0.959	nan	1.444	nan	nan	2.055	1.740	1.429	6.152	1.061	0.830	1.031
8792	chr2	150491056	150496141	+	0	NA	Intergenic	B1_Mus2|SINE|Alu	-8535	NM_001034900	545471	Mm.451002	NM_001034900	ENSMUSG00000074731	Zfp345	OTTMUSG00000015743	zinc finger protein 345	protein-coding	7.799	13.930	4.690	7.271	1.508	0.867	5.022	8.392	4.359	5.701	5.473	2.508	9.495	6.486	7.465	11.541	7.717	7.808	nan	1.401	0.980	1.018	0.913	0.711	12.312
1629	chr10	94535480	94540436	+	0	NA	intron (NM_172051, intron 1 of 3)	intron (NM_172051, intron 1 of 3)	23101	NM_172051	319880	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	AW488095|C630016B22Rik|C88213|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	4.929	1.215	0.495	3.784	3.027	1.654	5.353	3.060	5.239	6.218	nan	0.599	5.637	8.202	6.578	6.891	5.185	6.727	nan	0.882	0.337	nan	0.651	0.413	6.294
6576	chr17	35033961	35038664	+	0	NA	intron (NM_013600, intron 11 of 23)	ORR1C1|LTR|ERVL-MaLR	-8296	NM_023893	78376	Mm.390966	NM_023893	ENSMUSG00000036185	Sapcd1	2810436B06Rik|G7d|Ng23	suppressor APC domain containing 1	protein-coding	8.679	10.610	3.909	7.246	5.391	4.029	8.694	6.686	4.719	9.624	6.210	3.500	5.860	8.331	7.524	9.369	6.714	6.580	3.972	3.320	3.629	4.591	3.272	4.266	12.488
9691	chr3	108085497	108095280	+	0	NA	Intergenic	Intergenic	-2678	NM_008141	14686	Mm.439652	NM_008141	ENSMUSG00000009108	Gnat2	AW490837|Gnat-2|Gt-2|Tcalpha	guanine nucleotide binding protein, alpha transducing 2	protein-coding	7.416	0.808	0.478	7.918	4.684	3.288	2.893	1.484	5.517	6.402	3.832	1.399	5.580	6.218	nan	6.318	5.863	7.734	3.534	1.906	1.542	3.413	3.672	3.282	8.692
4197	chr13	60744671	60752390	+	0	NA	intron (NM_029653, intron 20 of 25)	intron (NM_029653, intron 20 of 25)	37834	NM_199148	218275	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	3.227	0.444	0.184	3.450	4.617	3.525	2.830	2.535	2.495	2.604	0.839	0.830	2.841	5.443	3.634	nan	1.874	5.035	1.036	0.817	0.682	0.635	0.776	0.697	3.932
12697	chr6	125044051	125048081	+	0	NA	intron (NM_133345, intron 2 of 7)	B1F1|SINE|Alu	3787	NR_130997	78202	Mm.445941	NR_130997	ENSMUSG00000108034	4930557K07Rik	-	RIKEN cDNA 4930557K07 gene	ncRNA	8.663	8.585	3.183	7.967	6.233	4.423	10.927	10.302	3.800	8.941	5.326	2.985	6.005	10.541	7.445	9.690	7.887	6.256	4.925	4.708	4.642	4.265	6.860	5.601	11.845
15477	chr9	107214932	107216445	+	0	NA	intron (NM_153413, intron 1 of 52)	MMERVK10C-int|LTR|ERVK	16221	NM_153413	208869	Mm.150259	NM_153413	ENSMUSG00000039716	Dock3	MOCA|PBP|mKIAA0299	dedicator of cyto-kinesis 3	protein-coding	4.888	6.350	3.162	2.767	2.697	2.299	3.384	1.859	2.225	3.071	4.991	1.995	1.568	4.074	2.506	2.761	2.477	3.280	0.937	2.076	2.372	1.022	1.011	0.506	5.010
14875	chr9	15332389	15340508	+	0	NA	intron (NM_176976, intron 11 of 26)	intron (NM_176976, intron 11 of 26)	-10118	NR_028568	100216535		NR_028568		Scarna9	Z32	small Cajal body-specific RNA 9	ncRNA	3.091	8.228	3.849	2.865	1.145	0.481	1.693	3.440	1.998	2.046	1.445	0.712	1.731	2.203	2.134	1.969	1.851	2.979	1.991	2.104	1.187	2.462	2.631	1.294	3.224
7003	chr18	6134877	6137923	+	0	NA	promoter-TSS (NM_001039692)	promoter-TSS (NM_001039692)	-302	NM_001039692	75415	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	9.544	8.377	2.681	8.070	3.819	1.723	6.517	10.615	5.111	8.010	6.264	3.826	7.644	8.830	7.724	9.056	5.627	7.622	3.274	2.064	1.660	4.224	3.385	3.747	11.753
9265	chr3	50241799	50243341	+	0	NA	Intergenic	Charlie10|DNA|hAT-Charlie	201043	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	4.091	1.790	1.528	1.923	0.933	0.316	4.990	5.214	1.951	2.038	4.441	4.588	2.940	3.712	2.322	1.896	3.118	2.589	1.063	1.589	0.613	1.314	0.706	0.419	1.650
14752	chr8	125930488	125937891	+	0	NA	intron (NM_145608, intron 4 of 9)	Lx5|LINE|L1	23739	NM_145608	234878	Mm.216458	NM_145608	ENSMUSG00000031853	Map3k21	Mlk4|mKIAA1804	mitogen-activated protein kinase kinase kinase 21	protein-coding	0.697	nan	0.827	nan	0.381	0.181	nan	nan	0.306	0.473	0.387	0.245	0.315	0.582	nan	0.697	0.394	nan	nan	2.131	1.637	6.830	1.036	nan	nan
4366	chr13	104815072	104816447	+	0	NA	intron (NM_026072, intron 1 of 13)	intron (NM_026072, intron 1 of 13)	1194	NM_026072	67285	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	3.091	1.328	0.471	3.957	1.983	0.918	1.907	2.194	2.901	nan	2.155	1.620	2.745	3.677	2.869	3.130	1.999	4.065	1.348	2.249	1.338	4.565	0.649	0.812	2.323
6053	chr16	36708723	36711125	+	0	NA	intron (NM_001285791, intron 3 of 6)	intron (NM_001285791, intron 3 of 6)	15946	NM_001285791	106347	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	nan	13.535	6.396	1.636	0.689	0.384	0.547	1.031	0.704	0.927	0.656	0.285	0.379	nan	1.235	nan	0.895	0.823	1.076	0.633	0.151	0.704	0.474	0.376	nan
15640	chr9	123411521	123417214	+	0	NA	intron (NM_153168, intron 7 of 20)	L1_Mm|LINE|L1	47427	NM_153168	102436	Mm.276076	NM_153168	ENSMUSG00000035202	Lars2	AI035546|Kiaa0028|LEURS	leucyl-tRNA synthetase, mitochondrial	protein-coding	5.177	3.492	1.606	3.184	nan	0.702	nan	4.809	3.426	2.952	1.054	0.825	3.760	3.296	5.003	5.640	4.009	4.665	1.150	0.869	0.538	0.976	1.381	1.032	5.579
3454	chr12	77563868	77569854	+	0	NA	Intergenic	Intergenic	156720	NM_001252616	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	4.151	0.817	0.666	1.628	4.832	3.563	3.421	3.443	2.378	2.435	2.209	2.393	3.685	nan	2.992	nan	2.000	2.162	1.576	0.705	0.819	1.390	1.267	1.473	3.576
11620	chr5	117275770	117281810	+	0	NA	Intergenic	Intergenic	8774	NM_018858	23980	Mm.195898	NM_018858	ENSMUSG00000032959	Pebp1	HCNP|Pbp|Pbp1|Pbpr|Rkip	phosphatidylethanolamine binding protein 1	protein-coding	0.194	0.226	0.130	0.132	0.079	0.082	0.277	0.185	0.165	0.163	0.166	0.103	0.109	0.162	0.080	0.349	0.157	0.179	nan	nan	1.314	7.944	nan	1.265	0.293
8189	chr2	35464690	35474403	+	0	NA	Intergenic	MT2A|LTR|ERVL	-8097	NM_001145821	14594	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	3.913	1.040	0.375	3.658	2.214	0.981	4.597	7.754	2.913	nan	1.473	0.920	4.926	5.377	5.475	9.254	5.254	4.732	0.773	0.798	0.639	1.141	0.434	0.266	7.113
4382	chr13	108832833	108836341	+	0	NA	intron (NM_011056, intron 1 of 16)	intron (NM_011056, intron 1 of 16)	180410	NM_011056	238871	Mm.434429	NM_011056	ENSMUSG00000021699	Pde4d	9630011N22Rik|Dpde3	phosphodiesterase 4D, cAMP specific	protein-coding	9.868	6.739	1.997	8.652	4.142	1.842	6.572	7.561	6.482	9.697	9.245	6.063	8.463	9.161	8.503	11.271	5.369	10.015	4.265	1.927	1.697	nan	2.676	2.085	11.519
6626	chr17	43327086	43329385	+	0	NA	Intergenic	Intergenic	57888	NM_133776	77596	Mm.159950	NM_133776	ENSMUSG00000041293	Adgrf1	5031409J19Rik|Gpr110|KPG_009	adhesion G protein-coupled receptor F1	protein-coding	5.920	0.634	0.927	1.983	1.748	0.952	7.297	5.050	4.146	4.346	1.622	1.794	5.359	6.089	5.155	4.327	nan	4.894	2.067	1.270	0.891	1.768	2.625	1.513	3.760
9125	chr2	181330993	181336903	+	0	NA	intron (NR_030710, intron 7 of 32)	B2_Mm1a|SINE|B2	13142	NR_030710	269400	Mm.11333	NM_001001882	ENSMUSG00000038685	Rtel1	AI451565|AW540478|Rtel	regulator of telomere elongation helicase 1	protein-coding	6.921	5.853	1.724	5.674	3.117	1.722	6.600	8.977	4.081	6.024	4.533	2.461	6.828	7.904	7.684	nan	6.899	nan	5.574	2.562	2.182	5.914	3.570	3.206	11.438
2885	chr11	105880609	105882367	+	0	NA	intron (NM_181071, intron 13 of 25)	B1_Mur3|SINE|Alu	62659	NM_007805	13056	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	0.366	0.917	0.521	nan	0.496	0.740	0.663	0.420	nan	nan	0.235	0.232	0.319	nan	0.888	0.661	0.422	nan	4.949	3.595	3.695	5.799	6.111	4.983	0.818
8579	chr2	119500065	119502241	+	0	NA	Intergenic	B4A|SINE|B4	-23524	NM_026574	68142	Mm.330496	NM_026574	ENSMUSG00000034154	Ino80	2310079N15Rik|4632409L19Rik|Inoc1	INO80 complex subunit	protein-coding	8.925	8.057	2.981	8.455	5.147	3.800	6.508	9.103	4.872	7.648	5.756	3.470	nan	8.364	6.243	9.290	7.428	7.338	3.532	3.915	2.918	4.006	4.584	4.453	12.135
3106	chr11	120166256	120169965	+	0	NA	Intergenic	Intergenic	-16759	NM_001164798	72055	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	2.939	nan	0.800	3.934	1.689	0.857	nan	nan	2.538	nan	1.340	0.668	5.416	6.899	6.377	6.617	3.469	nan	2.456	nan	0.814	4.272	1.464	1.609	6.831
2488	chr11	77177710	77187427	+	0	NA	intron (NM_176965, intron 1 of 17)	intron (NM_176965, intron 1 of 17)	6400	NM_176965	319634	Mm.108786	NM_176965	ENSMUSG00000050944	Efcab5	4930563A03Rik	EF-hand calcium binding domain 5	protein-coding	7.600	2.242	1.505	5.363	4.897	3.068	nan	4.158	5.238	5.669	3.951	2.754	6.464	6.335	nan	5.954	5.802	6.778	1.160	1.812	nan	0.780	0.970	0.878	3.695
12960	chr7	19606232	19608854	+	0	NA	intron (NM_001290457, intron 10 of 10)	B3A|SINE|B2	-3057	NR_125836	53609	Mm.20913	NM_016680	ENSMUSG00000061028	Clasrp	Clasp|Sfrs16|Srsf16|Swap2	CLK4-associating serine/arginine rich protein	protein-coding	2.064	1.036	0.592	1.417	1.129	0.644	7.547	10.084	2.404	2.572	1.154	1.110	5.350	5.286	5.435	4.400	4.749	4.052	0.908	0.901	0.421	0.781	4.628	3.797	3.344
9764	chr3	121833257	121836731	+	0	NA	Intergenic	Intergenic	-19779	NM_008991	19299	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	5.274	1.079	0.554	5.954	8.730	5.387	10.627	5.101	3.303	4.350	1.852	1.575	10.385	12.566	7.467	7.180	4.739	6.617	1.794	1.999	1.667	1.661	nan	2.111	6.500
3869	chr13	20477756	20479507	+	0	NA	intron (NM_198093, intron 1 of 6)	MER33|DNA|hAT-Charlie	5641	NM_198093	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	4.535	2.353	1.210	3.438	1.019	0.319	2.130	3.205	3.834	3.702	0.535	1.100	3.744	4.250	2.297	2.548	nan	5.571	0.687	1.054	0.680	0.825	0.909	0.280	2.903
1985	chr11	12131116	12133051	+	0	NA	Intergenic	L1Md_T|LINE|L1	-94663	NM_010345	14783	Mm.273117	NM_010345	ENSMUSG00000020176	Grb10	5730571D09Rik|AI325020|Meg1|mKIAA0207	growth factor receptor bound protein 10	protein-coding	3.041	0.690	0.224	3.274	1.232	0.289	2.983	2.695	3.224	3.886	1.547	0.684	3.939	3.443	4.234	5.596	2.672	4.651	0.837	nan	0.624	1.756	0.609	0.643	5.711
2669	chr11	94885518	94888185	+	0	NA	Intergenic	B1F|SINE|Alu	-37258	NM_001205037	432591	Mm.370372	NM_001205037		Gm11544	OTTMUSG00000002042	predicted gene 11544	protein-coding	1.777	nan	0.982	3.228	1.453	0.844	3.563	2.713	2.977	4.439	0.332	0.839	3.040	6.503	5.716	7.001	3.669	5.440	0.684	nan	0.460	1.205	nan	nan	8.771
13668	chr7	123476266	123478561	+	0	NA	Intergenic	Lx3A|LINE|L1	15119	NM_001109045	11833	Mm.273175	NM_007474	ENSMUSG00000030762	Aqp8	AI255744|AQP-8	aquaporin 8	protein-coding	8.163	11.435	3.689	9.685	5.278	2.638	6.825	9.770	5.858	8.367	6.956	3.831	7.725	8.906	9.526	9.154	7.160	9.947	5.993	3.240	2.121	6.384	3.510	3.667	11.265
3567	chr12	86454059	86457629	+	0	NA	intron (NM_011934, intron 1 of 6)	B2_Mm2|SINE|B2	34200	NM_011934	26380	Mm.235550	NM_011934	ENSMUSG00000021255	Esrrb	Err2|Errb|Estrrb|Nr3b2	estrogen related receptor, beta	protein-coding	4.922	0.842	0.698	1.730	1.815	1.132	2.593	1.691	2.076	1.930	1.383	0.594	4.109	5.104	3.861	4.012	5.216	3.935	0.965	0.617	0.658	0.785	0.925	0.394	3.880
15394	chr9	96096124	96098780	+	0	NA	Intergenic	ERVB4_1B-LTR_MM|LTR|ERVK	-21977	NM_177352	235533	Mm.213651	NM_177352	ENSMUSG00000041440	Gk5	AV095337|C330018K18Rik|G630067D24Rik	glycerol kinase 5 (putative)	protein-coding	6.536	4.203	1.712	6.080	2.268	0.815	5.159	5.206	4.804	7.892	2.435	2.161	5.679	6.621	6.586	8.647	3.979	7.794	3.744	1.963	2.060	5.853	3.805	2.893	11.477
12752	chr6	129142687	129145700	+	0	NA	Intergenic	L1_Mus3|LINE|L1	27675	NR_073569	724020	Mm.424965	NR_073569		Klrb1-ps1	Nkrp1e	killer cell lectin-like receptor subfamily B member 1, pseudogene 1	pseudo	1.958	nan	6.484	1.374	1.635	0.757	0.977	nan	1.806	1.382	1.087	0.885	0.653	0.835	0.749	nan	1.199	1.164	0.890	2.514	1.694	0.638	1.350	1.306	0.541