PeakID (cmd=annotatePeaks.pl merged_SE_SSE2_SM9.GO0003677.bed hg19 -size given -wig ./20171108_112-H3_p5_swig_treat_afterfiting_all.scaled.wig ./20171108_190-H3_p5_swig_treat_afterfiting_all.scaled.wig ./20171108_283-H3_p5_swig_treat_afterfiting_all.scaled.wig ./CORL88_7_21_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./H1436_H3K27ac_p5_swig_treat_afterfiting_all.scaled.wig ./H1436_ab4729_ChIP_p5_swig_treat_afterfiting_all.scaled.wig ./H1963_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./H196_ab4729_ChIP_p5_swig_treat_afterfiting_all.scaled.wig ./H196_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./H2081_ab4729_ChIP_p5_swig_treat_afterfiting_all.scaled.wig ./H2081_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./H209_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./H345_H3K27ac_p5_swig_treat_afterfiting_all.scaled.wig ./H841_ab4729_ChIP_p5_swig_treat_afterfiting_all.scaled.wig ./H841_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_COR-L311_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_COR-L311_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H1048-cas9_sgNeg_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H1048-cas9_sgPOU2F3_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H128_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H128_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H146_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H146_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H211_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H211_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H446_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H446_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H510A_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H510A_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H524_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H524_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H526_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H526_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H69_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H69_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H82_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H82_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H889_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H889_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./dms79_ab4729_chip_0825_0828_15c_S13_p5_swig_treat_afterfiting_all.scaled.wig ./h187_ab4729_chip_0825_0828_15c_S15_p5_swig_treat_afterfiting_all.scaled.wig ./h69_ab4729_chip_0610_0714_15c_S27_p5_swig_treat_afterfiting_all.scaled.wig ./hcc33_ab4729_chip_0825_0828_17c_S17_p5_swig_treat_afterfiting_all.scaled.wig ./st_hw_h1963_k27ac_p5_swig_treat_afterfiting_all.scaled.wig ./st_hw_h209_k27ac_p5_swig_treat_afterfiting_all.scaled.wig ./st_hw_h2171_k27ac_p5_swig_treat_afterfiting_all.scaled.wig ./st_hw_shp77_k27ac_p5_swig_treat_afterfiting_all.scaled.wig ./ts_hw_h526_ab4729_chip_0505_12c_S19_hg19_p5_swig_treat_afterfiting_all.scaled.wig ./ts_hw_h82_ab4729_chip_0331_12c_S3_hg19_p5_swig_treat_afterfiting_all.scaled.wig) Chr Start End Strand Peak Score Focus Ratio/Region Size Annotation Detailed Annotation Distance to TSS Nearest PromoterID Entrez ID Nearest Unigene Nearest Refseq Nearest Ensembl Gene Name Gene Alias Gene Description Gene Type ./20171108_112-H3_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./20171108_190-H3_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./20171108_283-H3_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./CORL88_7_21_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H1436_H3K27ac_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H1436_ab4729_ChIP_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H1963_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H196_ab4729_ChIP_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H196_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H2081_ab4729_ChIP_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H2081_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H209_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H345_H3K27ac_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H841_ab4729_ChIP_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H841_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_COR-L311_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_COR-L311_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H1048-cas9_sgNeg_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H1048-cas9_sgPOU2F3_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H128_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H128_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H146_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H146_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H211_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H211_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H446_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H446_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H510A_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H510A_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H524_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H524_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H526_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H526_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H69_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H69_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H82_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H82_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H889_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H889_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./dms79_ab4729_chip_0825_0828_15c_S13_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./h187_ab4729_chip_0825_0828_15c_S15_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./h69_ab4729_chip_0610_0714_15c_S27_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./hcc33_ab4729_chip_0825_0828_17c_S17_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./st_hw_h1963_k27ac_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./st_hw_h209_k27ac_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./st_hw_h2171_k27ac_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./st_hw_shp77_k27ac_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./ts_hw_h526_ab4729_chip_0505_12c_S19_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./ts_hw_h82_ab4729_chip_0331_12c_S3_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp 2139 chr6 45342345 45346581 + 0 NA intron (NM_003599, intron 1 of 10) L3|LINE|CR1 1325 NM_001261823 8464 Hs.368325 NM_003599 ENSG00000196284 SUPT3H SPT3|SPT3L SPT3 homolog, SAGA and STAGA complex component protein-coding 5.118 2.429 2.669 4.023 3.813 1.632 3.652 4.130 0.152 1.518 0.714 3.230 6.819 3.866 0.150 4.560 5.926 12.554 14.766 4.751 3.844 2.195 0.678 13.501 14.609 3.240 4.335 10.734 nan 7.899 8.587 2.919 6.324 3.124 1.468 8.636 9.083 3.686 1.922 4.051 2.336 0.158 2.093 3.652 3.230 1.204 2.701 3.519 3.905 1629 chr20 50409339 50434093 + 0 NA Intergenic AluSx|SINE|Alu -2654 NM_020436 57167 Hs.517113 NM_020436 ENSG00000101115 SALL4 DRRS|HSAL4|ZNF797 spalt like transcription factor 4 protein-coding 1.046 1.019 0.865 0.292 0.281 0.155 0.269 0.571 0.231 0.115 0.129 0.174 0.894 6.995 0.194 0.893 nan 0.231 0.422 0.394 0.383 1.948 0.508 1.337 1.348 0.496 0.778 0.590 0.975 1.695 1.738 0.560 0.686 1.456 1.170 1.217 1.737 0.335 0.430 0.090 0.090 0.604 0.656 0.269 0.174 0.316 0.028 0.120 0.455 499 chr11 85369660 85377818 + 0 NA 3' UTR (NM_001039618, exon 1 of 1) 3' UTR (NM_001039618, exon 1 of 1) 2443 NR_028025 58487 Hs.535319 NM_021212 ENSG00000137504 CREBZF SMILE|ZF CREB/ATF bZIP transcription factor protein-coding 2.802 2.828 1.893 3.099 3.645 1.662 2.287 0.886 0.039 1.458 0.943 3.106 5.791 2.413 0.167 5.185 4.966 4.351 6.395 6.785 6.978 5.790 3.628 15.233 16.105 3.440 4.102 4.950 7.632 5.533 5.632 4.994 7.853 4.127 5.252 3.660 3.410 2.782 1.465 2.612 2.870 0.925 2.314 2.287 3.106 2.484 1.715 1.746 0.989 501 chr11 93006376 93023189 + 0 NA Intergenic L1MA4A|LINE|L1 -49101 NM_181645 159989 Hs.436625 NM_181645 ENSG00000165325 DEUP1 CCDC67 deuterosome assembly protein 1 protein-coding 0.677 nan 0.591 0.270 0.266 0.096 0.167 0.071 0.048 0.397 0.212 0.334 2.318 0.067 0.105 0.673 0.434 0.222 nan 0.867 0.848 0.183 0.064 0.363 0.480 0.232 0.400 1.014 2.250 0.284 0.147 0.229 0.364 0.933 1.352 0.224 nan 0.717 0.481 4.221 0.391 0.407 0.123 0.167 0.334 0.012 0.265 0.141 0.118 130 chr1 61322879 61341413 + 0 NA Intergenic Intergenic -40890 NR_110628 101926964 Hs.650459 NR_110628 ENSG00000231252 LOC101926964 - uncharacterized LOC101926964 ncRNA 2.993 0.847 7.086 0.110 0.454 0.224 0.483 0.192 0.061 0.160 0.111 0.321 0.620 0.042 0.125 0.386 0.355 0.196 0.462 0.611 0.834 0.141 0.045 0.304 0.274 nan nan 0.497 nan 4.807 5.314 0.239 0.407 0.875 0.447 0.230 0.624 0.787 0.573 0.095 0.086 0.262 0.100 0.483 0.321 1.427 0.093 0.137 0.180 857 chr15 32905282 32911702 + 0 NA exon (NM_014783, exon 1 of 12) exon (NM_014783, exon 1 of 12) 815 NM_014783 9824 Hs.591130 NM_014783 ENSG00000198826 ARHGAP11A GAP (1-12) Rho GTPase activating protein 11A protein-coding 4.211 nan nan 2.827 4.484 2.721 4.282 2.930 0.375 3.079 2.113 5.290 8.427 4.171 0.131 4.583 5.064 6.735 8.443 6.798 5.928 5.321 2.277 7.812 7.893 4.895 5.736 5.549 7.932 8.719 9.464 2.936 6.829 6.855 8.984 4.692 6.315 3.042 1.608 3.059 3.220 2.465 2.830 4.282 5.290 1.782 3.009 3.838 1.858 937 chr16 14650206 14667156 + 0 NA intron (NM_002582, intron 18 of 23) intron (NM_002582, intron 18 of 23) 65447 NM_001134477 5073 Hs.253197 NM_002582 ENSG00000140694 PARN DAN|DKCB6|PFBMFT4 poly(A)-specific ribonuclease protein-coding 0.954 1.333 nan 2.649 0.432 0.265 0.394 0.298 0.123 0.407 0.325 0.268 0.451 0.115 0.083 0.927 1.311 0.385 0.441 0.350 0.370 6.754 2.410 0.682 0.610 0.483 0.719 1.522 1.608 nan 0.216 1.397 2.417 0.326 0.738 0.292 0.799 1.277 0.717 0.391 0.215 0.050 0.211 0.394 0.268 0.252 0.084 4.187 0.189 2489 chr9 15464390 15472540 + 0 NA intron (NM_033222, intron 14 of 15) Tigger4|DNA|TcMar-Tigger 41822 NM_021144 11168 Hs.658434 NM_021144 ENSG00000164985 PSIP1 DFS70|LEDGF|PAIP|PSIP2|p52|p75 PC4 and SFRS1 interacting protein 1 protein-coding nan nan 0.999 0.511 1.112 0.590 0.251 0.195 0.039 1.252 1.235 1.166 0.514 0.106 0.061 0.250 0.249 0.487 0.771 0.720 1.061 1.333 0.665 0.226 0.311 1.192 1.350 1.776 1.430 0.703 0.330 0.361 0.666 2.749 4.567 0.319 0.744 5.405 1.966 0.240 0.196 0.961 0.160 0.251 1.166 0.036 0.262 0.118 0.180 2039 chr5 158293971 158310489 + 0 NA intron (NM_182708, intron 5 of 14) intron (NM_182708, intron 5 of 14) 224540 NM_001324103 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 early B-cell factor 1 protein-coding 0.968 nan 2.008 0.028 0.883 0.456 0.341 0.824 0.175 0.076 0.105 0.225 0.373 0.053 0.112 0.846 0.735 0.354 0.323 1.499 1.445 0.091 0.064 0.056 0.075 1.010 1.360 0.076 0.135 1.482 1.232 0.712 1.260 0.169 0.118 0.307 0.733 0.965 0.506 1.276 3.220 0.035 3.417 0.341 0.225 0.135 0.036 0.817 0.254 841 chr14 103795796 103803456 + 0 NA promoter-TSS (NM_001969) promoter-TSS (NM_001969) -713 NM_001969 1983 Hs.433702 NM_001969 ENSG00000100664 EIF5 EIF-5|EIF-5A eukaryotic translation initiation factor 5 protein-coding 6.950 2.972 4.077 6.631 4.049 1.992 6.064 3.142 0.420 2.067 1.142 5.114 7.611 4.376 0.105 4.209 4.614 6.418 8.269 9.118 9.251 8.947 5.852 9.477 9.709 3.119 4.170 7.592 11.217 8.370 8.350 5.321 10.025 4.239 4.693 4.275 3.420 3.590 1.853 4.090 4.811 0.971 3.026 6.064 5.114 1.274 1.521 3.662 1.167 161 chr1 114470866 114491689 + 0 NA intron (NM_198268, intron 1 of 15) AluSz|SINE|Alu -9130 NR_110726 101928846 Hs.232534 NR_110725 ENSG00000235527 HIPK1-AS1 - HIPK1 antisense RNA 1 ncRNA nan 1.396 1.617 0.659 0.790 0.404 0.617 0.994 0.201 0.368 0.162 0.648 1.634 0.734 0.153 0.787 0.957 1.198 1.817 1.328 nan 1.360 0.556 1.919 1.931 1.586 2.218 1.068 1.673 1.562 1.377 0.885 1.796 0.376 0.313 2.408 4.231 0.924 0.708 0.248 0.855 0.054 0.505 0.617 0.648 0.207 0.341 0.490 1.395 1654 chr20 62251750 62261158 + 0 NA intron (NM_012384, intron 1 of 9) intron (NM_012384, intron 1 of 9) 2000 NM_012384 26205 Hs.473286 NM_012384 ENSG00000101216 GMEB2 GMEB-2|P79PIF|PIF79 glucocorticoid modulatory element binding protein 2 protein-coding 3.700 3.285 3.079 2.717 2.224 1.522 3.777 2.039 0.362 1.766 0.815 4.152 3.854 2.492 0.162 4.698 nan 2.398 2.921 4.161 4.130 4.773 1.847 12.550 12.513 2.831 4.020 3.159 5.040 4.833 5.217 2.881 4.972 1.685 1.756 3.498 4.839 2.479 1.399 2.489 2.763 0.428 1.254 3.777 4.152 0.906 3.861 1.253 1.431 635 chr12 66111338 66138473 + 0 NA Intergenic Intergenic -88753 NR_120433 100507065 Hs.591038 NR_120431 LOC100507065 - uncharacterized LOC100507065 ncRNA 0.723 0.580 0.632 0.069 0.161 0.065 0.081 0.150 0.047 0.058 0.107 0.053 0.228 6.094 0.166 0.231 0.126 0.252 0.443 0.331 nan 0.116 0.060 0.136 0.129 0.156 0.237 0.405 0.504 0.775 0.624 0.196 0.316 0.035 0.056 0.752 1.304 0.185 0.332 0.008 0.049 0.007 0.041 0.081 0.053 0.018 0.019 0.070 0.475 391 chr11 792358 799047 + 0 NA intron (NM_001191061, intron 1 of 9) intron (NM_001191061, intron 1 of 9) 561 NM_024698 79751 Hs.99486 NM_024698 ENSG00000177542 SLC25A22 EIEE3|GC-1|GC1|NET44 solute carrier family 25 member 22 protein-coding 3.931 2.928 11.502 0.851 2.978 1.318 2.419 1.145 0.192 0.954 0.495 3.273 4.964 1.553 0.080 4.732 6.689 1.853 2.612 6.398 5.091 2.986 1.231 2.856 2.897 3.374 4.521 2.647 3.473 5.421 7.054 1.997 2.965 2.449 1.849 2.366 3.630 1.669 0.861 1.704 7.080 0.770 1.115 2.419 3.273 0.873 1.329 2.166 1.222 145 chr1 78146574 78151233 + 0 NA promoter-TSS (NM_015534) promoter-TSS (NM_015534) 209 NM_001308237 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding nan 3.099 6.770 5.156 5.951 2.868 4.236 3.725 0.277 2.863 0.981 5.028 9.890 5.550 0.173 5.704 6.510 8.378 12.001 11.777 12.054 9.857 4.809 15.108 16.285 7.213 8.856 11.869 16.704 9.465 10.056 6.778 10.920 4.528 4.983 11.431 10.686 4.972 2.613 5.193 3.730 0.794 3.249 4.236 5.028 1.788 2.286 2.484 3.210 1224 chr18 60980993 60991008 + 0 NA 5' UTR (NM_000633, exon 2 of 3) 5' UTR (NM_000633, exon 2 of 3) 613 NM_000633 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2, apoptosis regulator protein-coding 1.719 1.789 5.385 5.576 3.510 1.618 2.756 0.437 0.032 1.211 0.609 4.103 13.329 0.498 0.088 2.747 3.351 6.746 5.834 8.712 7.065 7.579 2.888 16.553 16.359 0.606 nan 8.176 8.734 1.782 1.824 2.593 5.538 4.449 4.564 0.499 0.386 6.217 3.237 3.926 2.787 0.872 1.160 2.756 4.103 0.427 2.288 2.387 0.126 2450 chr8 144812725 144825640 + 0 NA intron (NR_033849, intron 2 of 3) intron (NR_033849, intron 2 of 3) 2872 NR_033849 100128338 Hs.493171 NR_033849 ENSG00000203499 FAM83H-AS1 onco-lncRNA-3 FAM83H antisense RNA 1 (head to head) ncRNA 2.420 1.855 nan 3.699 1.294 0.886 0.463 0.070 0.102 0.511 0.284 3.446 6.964 0.638 0.040 2.641 3.456 1.194 2.034 nan 3.679 nan 0.777 10.981 11.513 0.082 0.267 4.487 5.860 0.981 1.177 2.173 3.142 1.868 1.127 0.209 0.301 1.967 1.076 6.075 0.777 0.245 0.264 0.463 3.446 0.787 1.241 0.943 0.066 776 chr14 36906155 36936660 + 0 NA Intergenic MLT1D|LTR|ERVL-MaLR 61583 NR_138601 253970 Hs.509165 NM_001101341 ENSG00000229415 SFTA3 NANCI|SFTPH|SP-H surfactant associated 3 protein-coding 1.164 3.826 0.650 0.511 2.032 1.172 0.353 0.161 0.111 0.237 0.133 0.776 2.013 0.065 0.108 0.145 0.104 0.194 0.219 1.172 1.276 0.213 0.084 0.234 0.228 0.861 1.072 1.540 1.508 0.679 0.314 0.129 0.172 0.231 0.235 0.131 0.160 0.835 0.598 3.847 3.757 0.081 0.039 0.353 0.776 0.088 0.103 0.033 0.076 830 chr14 95998390 96004405 + 0 NA promoter-TSS (NR_001459) promoter-TSS (NR_001459) 74 NM_016417 51218 Hs.744943 NM_016417 ENSG00000182512 GLRX5 C14orf87|FLB4739|GRX5|PR01238|PRO1238|PRSA|SIDBA3|SPAHGC glutaredoxin 5 protein-coding 7.200 2.233 nan 6.324 4.225 2.240 4.594 2.593 0.294 2.091 1.314 5.459 7.647 2.538 0.224 4.043 4.373 3.254 4.767 8.590 7.772 5.905 1.682 10.528 11.301 5.253 6.755 4.761 7.672 10.302 13.143 3.925 6.571 5.750 5.216 4.121 4.846 nan 1.871 3.419 3.699 0.984 3.432 4.594 5.459 1.257 1.761 2.770 1.127 1778 chr3 71613147 71636024 + 0 NA intron (NM_001012505, intron 2 of 6) intron (NM_001012505, intron 2 of 6) 8319 NM_001244808 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 1.672 0.909 2.165 1.322 0.878 0.409 0.582 0.464 0.070 1.350 0.634 1.183 3.179 0.205 0.075 0.574 0.709 3.228 nan 1.464 1.449 1.663 0.785 2.320 2.416 0.099 0.145 1.995 3.354 6.398 6.787 0.475 1.341 2.194 1.615 0.365 nan 1.409 0.817 0.176 1.321 0.578 1.120 0.582 1.183 0.217 1.616 0.626 0.168 435 chr11 44958172 44991541 + 0 NA Intergenic L2b|LINE|L2 -1999 NM_001318386 9537 Hs.554791 NM_006034 ENSG00000175274 TP53I11 PIG11 tumor protein p53 inducible protein 11 protein-coding nan 2.408 2.010 0.564 3.846 1.968 1.255 0.375 0.131 0.513 0.311 1.285 3.081 0.461 0.089 0.802 1.645 0.552 0.832 2.124 1.704 2.369 0.633 0.135 0.114 1.592 2.232 0.443 0.753 3.815 3.693 0.631 0.771 0.962 0.967 0.976 nan 1.310 0.838 2.395 1.154 0.322 0.575 1.255 1.285 2.299 0.131 0.181 0.552 1465 chr2 113031846 113037059 + 0 NA intron (NM_198581, intron 1 of 11) intron (NM_198581, intron 1 of 11) 1274 NM_198581 376940 Hs.190477 NM_198581 ENSG00000188177 ZC3H6 ZC3HDC6 zinc finger CCCH-type containing 6 protein-coding 4.926 nan 4.443 4.801 5.599 3.072 4.957 3.050 0.422 2.072 1.025 6.154 nan 3.197 0.159 6.524 5.056 5.932 7.825 10.811 nan 7.933 6.128 16.056 16.126 4.257 5.100 7.350 12.142 8.184 8.435 4.643 6.329 3.576 3.292 9.478 6.992 2.236 1.263 4.718 2.397 0.584 1.935 4.957 6.154 1.606 2.767 1.862 2.873 2476 chr9 4222139 4247475 + 0 NA intron (NM_001042413, intron 2 of 10) MIRc|SINE|MIR 65228 NM_001042413 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 0.645 1.987 0.663 0.136 0.364 0.159 0.310 0.576 0.133 0.161 0.154 0.114 0.519 0.128 0.112 0.213 0.144 2.404 7.237 0.313 0.397 0.165 0.073 0.288 0.241 0.721 1.177 0.253 0.267 0.421 0.179 0.159 0.280 0.104 0.145 0.095 nan 0.825 0.959 0.039 0.087 0.011 0.046 0.310 0.114 0.050 0.072 0.035 0.025 677 chr12 122515677 122530045 + 0 NA intron (NM_014938, intron 1 of 16) MIRc|SINE|MIR 6227 NM_014938 22877 Hs.437153 NM_014938 ENSG00000175727 MLXIP MIR|MONDOA|bHLHe36 MLX interacting protein protein-coding 1.933 1.665 1.236 1.151 1.655 0.884 0.752 0.430 0.131 0.735 0.490 1.505 2.204 0.799 0.152 1.530 2.022 0.952 1.387 1.982 1.885 nan 0.758 2.462 2.304 1.434 2.096 3.067 4.096 1.659 1.697 3.709 6.741 1.321 1.500 0.785 1.031 1.909 1.070 1.047 2.052 0.273 0.706 0.752 1.505 0.220 0.619 6.032 0.319 2379 chr8 73774781 73809621 + 0 NA intron (NM_004770, intron 2 of 2) L1HS|LINE|L1 -128896 NM_003218 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 2.087 1.137 4.790 2.135 0.585 0.267 0.411 0.103 0.074 0.989 0.471 2.082 1.231 0.050 0.082 0.459 0.523 0.312 0.386 3.988 4.165 3.634 1.191 0.744 0.748 1.122 1.802 2.412 2.548 2.761 2.330 0.251 0.409 2.785 3.106 0.933 3.247 3.975 1.931 0.329 0.535 0.814 0.313 0.411 2.082 0.125 2.754 0.097 0.691 2538 chr9 125662105 125668769 + 0 NA intron (NM_001100588, intron 1 of 20) intron (NM_001100588, intron 1 of 20) 2125 NM_001100588 54542 Hs.533499 NM_018835 ENSG00000056586 RC3H2 MNAB|RNF164 ring finger and CCCH-type domains 2 protein-coding nan nan 2.209 3.141 1.859 0.915 2.263 1.669 0.337 1.445 0.851 2.353 nan 1.283 0.100 3.674 3.112 4.312 6.533 4.926 5.059 3.339 1.546 7.524 8.438 2.019 nan 4.252 7.145 9.660 8.217 2.521 3.804 2.355 3.359 3.907 2.899 nan 1.144 1.496 1.028 0.410 1.912 2.263 2.353 0.680 1.493 1.061 0.760 339 chr10 8066608 8096536 + 0 NA Intergenic Intergenic 12882 NR_104329 399717 Hs.158992 NM_207423 ENSG00000197308 GATA3-AS1 - GATA3 antisense RNA 1 ncRNA 0.344 0.438 0.440 0.108 0.191 0.129 0.094 0.133 0.075 0.152 0.107 0.068 0.233 0.083 0.073 0.262 0.183 0.471 0.750 0.162 0.228 2.795 0.965 0.083 0.072 0.115 0.244 0.095 0.112 0.233 0.100 0.139 0.125 0.063 0.072 0.062 0.166 0.197 0.258 0.024 0.021 0.013 0.005 0.094 0.068 0.003 0.048 0.036 0.038 1518 chr2 201979201 201996443 + 0 NA intron (NM_001127183, intron 1 of 9) intron (NM_001127183, intron 1 of 9) 4553 NM_001127183 8837 Hs.390736 NM_003879 ENSG00000003402 CFLAR CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS CASP8 and FADD like apoptosis regulator protein-coding 3.389 nan 4.087 1.669 1.583 0.873 1.014 2.131 0.298 0.652 0.413 1.729 4.746 2.216 0.120 1.559 2.146 5.723 12.878 1.854 1.714 1.810 0.593 5.202 5.493 2.368 3.160 2.544 3.421 0.483 0.221 1.952 2.797 1.350 1.279 0.479 1.025 1.112 0.744 2.093 0.981 0.254 1.516 1.014 1.729 0.131 0.771 0.905 0.266 688 chr12 132567271 132570100 + 0 NA promoter-TSS (NR_003290) promoter-TSS (NR_003290) -143 NR_003290 347918 Hs.122115 NM_182613 ENSG00000185684 EP400NL - EP400 N-terminal like pseudo 3.442 2.378 2.398 3.163 1.934 1.312 1.527 1.349 0.225 1.673 0.964 2.635 4.370 2.565 0.058 3.125 2.460 2.445 3.212 3.774 3.267 3.469 1.368 8.515 8.195 2.535 3.689 nan 10.336 4.883 4.570 2.277 3.224 2.898 3.625 5.977 4.298 3.056 1.903 1.746 3.144 0.567 13.715 1.527 2.635 0.688 2.891 0.835 0.546 1438 chr2 47706178 47717437 + 0 NA Intergenic L1MB5|LINE|L1 -42869 NR_120602 644093 Hs.734158 NR_120602 ENSG00000235760 HCG2040054 - uncharacterized LOC644093 ncRNA 1.341 nan 1.079 0.116 0.393 0.116 0.110 0.120 0.085 0.131 0.190 0.096 0.691 0.183 0.164 0.330 0.385 0.359 0.417 nan 0.560 0.469 0.144 0.581 0.550 0.558 0.630 0.615 0.629 1.482 0.946 0.170 0.408 0.098 0.085 3.599 8.343 nan 0.333 0.109 0.134 0.017 0.092 0.110 0.096 0.042 0.018 0.053 3.112 2254 chr7 39111221 39143934 + 0 NA intron (NM_001166018, intron 3 of 10) intron (NM_001166018, intron 3 of 10) -74410 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 1.175 1.003 1.160 0.160 0.367 0.235 0.440 0.100 0.064 1.082 0.855 0.435 0.977 0.063 0.181 0.508 0.424 0.191 0.251 1.028 nan 5.409 1.993 0.678 0.581 0.232 nan nan nan 0.681 0.422 0.146 0.177 0.801 0.631 0.630 nan 2.046 1.076 1.211 0.689 0.122 0.281 0.440 0.435 0.161 0.563 0.049 0.657 1288 chr19 33863148 33868148 + 0 NA intron (NM_001252296, intron 1 of 1) intron (NM_001252296, intron 1 of 1) 218 NM_001252296 1054 Hs.429666 NM_001806 ENSG00000153879 CEBPG GPE1BP|IG/EBP-1 CCAAT/enhancer binding protein gamma protein-coding 5.142 4.276 4.831 7.910 4.012 2.336 2.220 3.133 0.290 1.909 0.795 4.354 15.243 4.493 0.209 3.906 5.192 4.438 6.479 5.415 4.688 7.882 4.775 11.742 12.136 2.973 4.327 5.626 7.784 nan 6.516 12.215 15.038 5.360 7.386 3.681 4.079 3.223 1.626 4.329 5.172 0.823 2.093 2.220 4.354 0.911 2.193 2.763 1.035 1060 chr17 37350722 37366819 + 0 NA intron (NM_001330200, intron 3 of 5) intron (NM_001330200, intron 3 of 5) 2194 NM_001330200 6143 Hs.381061 NM_000981 ENSG00000108298 RPL19 L19 ribosomal protein L19 protein-coding nan 2.431 1.422 1.275 2.925 1.450 2.815 1.344 0.219 1.285 0.696 2.000 5.012 1.712 0.081 3.225 3.394 2.540 3.377 nan 4.405 3.887 2.443 6.756 7.434 1.989 2.722 4.149 5.271 nan 4.389 2.560 3.151 2.708 3.540 3.058 3.534 2.120 1.136 3.821 1.488 0.528 0.832 2.815 2.000 1.324 1.644 0.859 1.076 1031 chr17 26821587 26841914 + 0 NA Intergenic MIRb|SINE|MIR -19209 NM_003593 8456 Hs.58611 NM_003593 ENSG00000109101 FOXN1 FKHL20|RONU|WHN forkhead box N1 protein-coding nan nan nan 0.151 0.348 0.213 0.176 0.095 0.040 0.077 0.066 0.153 2.319 0.069 0.094 0.743 0.771 0.283 0.511 0.517 0.484 1.055 0.295 0.437 0.428 0.314 0.562 1.390 1.246 7.131 7.448 0.822 0.918 0.412 0.294 1.357 nan 1.481 0.889 0.117 0.357 0.042 0.063 0.176 0.153 1.959 0.059 0.183 1.872 1122 chr17 76773535 76788866 + 0 NA Intergenic AluSx|SINE|Alu -2776 NM_017456 9267 Hs.191215 NM_004762 ENSG00000108669 CYTH1 B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7 cytohesin 1 protein-coding 2.639 1.825 2.643 1.142 1.510 0.696 0.849 1.550 0.650 0.604 0.464 1.807 3.531 0.919 0.099 1.395 1.641 1.432 1.846 1.838 1.547 1.718 0.534 1.624 1.542 nan 2.203 1.650 2.631 5.069 4.042 0.610 1.068 0.652 0.794 2.368 6.694 nan 0.854 0.621 1.186 0.118 0.459 0.849 1.807 0.265 1.072 0.238 2.841 2304 chr7 114046090 114073649 + 0 NA intron (NM_148898, intron 1 of 17) intron (NM_148898, intron 1 of 17) 4817 NM_148898 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding nan 0.862 2.680 0.164 1.326 0.728 0.506 0.292 0.082 1.133 0.807 3.061 3.425 0.157 0.142 3.033 2.508 1.735 1.548 0.354 0.523 3.538 3.739 0.275 0.280 3.218 3.781 0.736 1.097 1.666 1.319 0.337 0.563 3.625 4.289 1.237 1.852 0.848 0.649 0.068 3.095 0.929 0.610 0.506 3.061 0.141 0.493 0.061 0.625 2217 chr7 4749869 4754564 + 0 NA intron (NM_001037165, intron 1 of 8) intron (NM_001037165, intron 1 of 8) 30286 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 1.374 2.136 0.917 1.072 0.621 0.478 1.112 0.623 0.317 0.200 0.230 0.944 nan 0.189 0.178 0.867 1.038 2.078 nan 1.115 0.945 nan 0.170 2.412 2.636 0.575 0.700 nan 6.198 0.314 0.126 0.575 0.626 0.107 0.128 0.236 0.560 0.709 0.382 1.736 0.718 0.062 0.099 1.112 0.944 0.042 5.604 0.684 0.106 1587 chr20 20410750 20490662 + 0 NA intron (NM_020343, intron 37 of 39) intron (NM_020343, intron 37 of 39) 101941 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 1.967 1.713 nan 0.494 3.273 1.678 1.218 0.174 0.110 0.908 0.567 1.243 0.766 0.037 0.086 1.423 1.775 0.614 0.617 0.921 1.017 3.778 1.278 0.308 0.320 3.149 4.293 1.548 1.462 3.920 3.435 0.950 1.535 3.789 4.690 0.641 1.419 1.815 0.924 0.361 0.729 1.705 0.686 1.218 1.243 1.530 1.155 0.947 0.492 201 chr1 155558152 155581228 + 0 NA Intergenic LTR5_Hs|LTR|ERVK -10271 NR_046294 55154 Hs.656547 NM_018116 ENSG00000125459 MSTO1 LST005|MST misato 1, mitochondrial distribution and morphology regulator protein-coding nan nan 1.518 0.577 0.718 0.348 1.216 0.402 0.194 0.414 0.383 0.519 2.553 0.432 0.140 0.926 0.964 1.046 2.066 1.487 nan 3.012 1.262 0.715 0.819 1.031 1.526 1.101 1.983 1.259 1.095 1.300 1.654 0.796 0.862 2.136 4.163 0.978 0.618 0.466 1.173 0.115 0.310 1.216 0.519 0.384 0.693 0.449 1.509 935 chr16 11728430 11736352 + 0 NA Intergenic AluSg|SINE|Alu -29898 NM_003498 8303 Hs.618526 NM_003498 ENSG00000184602 SNN - stannin protein-coding 1.300 1.228 nan 1.719 0.675 0.223 0.322 1.252 0.285 0.416 0.212 2.013 1.313 0.096 0.060 1.038 1.059 0.508 0.828 1.113 0.912 9.437 3.013 0.885 0.976 0.904 1.614 3.264 3.517 nan 0.967 0.453 0.416 1.248 1.940 0.313 0.305 0.788 0.661 0.528 0.332 0.254 0.110 0.322 2.013 0.598 0.558 0.101 0.015 370 chr10 104168082 104183017 + 0 NA intron (NM_002779, intron 3 of 16) intron (NM_002779, intron 3 of 16) 3352 NM_002779 5662 Hs.154658 NM_002779 ENSG00000059915 PSD EFA6|EFA6A|PSD1|TYL pleckstrin and Sec7 domain containing protein-coding nan nan 1.410 1.966 3.409 1.767 1.720 0.281 0.108 1.300 0.615 3.655 4.464 0.701 0.079 3.098 4.199 0.911 1.303 6.371 5.209 5.037 2.247 0.794 0.753 1.414 nan 5.699 7.574 1.912 2.173 1.112 1.815 2.071 1.671 2.778 nan 1.569 0.951 1.569 2.347 0.627 1.310 1.720 3.655 0.786 1.859 1.055 1.734 874 chr15 63472028 63495359 + 0 NA intron (NM_016530, intron 1 of 7) intron (NM_016530, intron 1 of 7) 1965 NM_016530 51762 Hs.389733 NM_016530 ENSG00000166128 RAB8B - RAB8B, member RAS oncogene family protein-coding 1.372 0.884 nan 0.136 0.388 0.289 0.322 0.639 0.159 0.173 0.188 0.393 2.424 0.233 0.066 0.376 0.508 0.794 1.136 0.802 0.933 nan 0.283 0.336 0.373 3.017 3.294 0.615 0.726 5.329 4.602 0.588 0.847 0.522 0.618 0.641 1.417 1.044 0.584 0.094 0.137 0.183 0.364 0.322 0.393 0.250 0.348 0.241 0.289 484 chr11 72446685 72464121 + 0 NA intron (NM_001040118, intron 1 of 34) MIR3|SINE|MIR 8031 NM_001040118 116985 Hs.503165 NM_015242 ENSG00000186635 ARAP1 CENTD2 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 protein-coding nan 1.233 1.360 0.448 0.785 0.405 0.308 0.455 0.048 0.198 0.122 0.662 1.762 0.510 0.112 2.084 4.361 1.000 0.970 1.690 1.871 1.117 0.501 2.764 2.987 0.628 1.165 1.770 2.476 1.197 1.260 1.909 2.451 0.504 0.646 0.913 1.962 0.808 0.569 0.466 0.791 0.093 0.188 0.308 0.662 0.138 0.669 0.813 0.475 711 chr13 50224730 50246181 + 0 NA intron (NM_032565, intron 3 of 3) intron (NM_032565, intron 3 of 3) 30168 NR_103802 84650 Hs.433278 NM_032565 ENSG00000123179 EBPL EBRP emopamil binding protein like protein-coding 1.208 nan nan 0.248 0.145 0.105 0.180 0.146 0.099 0.116 0.099 0.242 0.180 0.065 0.092 0.556 0.594 0.181 0.209 0.480 0.604 nan 0.316 0.295 0.300 0.302 0.476 0.615 0.478 0.851 0.619 0.280 0.429 0.144 0.136 1.599 nan 0.299 0.230 0.081 0.252 0.031 0.109 0.180 0.242 0.045 0.080 0.088 0.951 35 chr1 10883531 10905902 + 0 NA Intergenic Intergenic -37983 NM_001079843 54897 Hs.439894 NM_017766 ENSG00000130940 CASZ1 CAS11|CST|SRG|ZNF693|dJ734G22.1 castor zinc finger 1 protein-coding 1.202 0.948 nan 3.168 3.541 1.737 1.979 0.090 0.122 0.597 0.393 2.030 0.888 0.140 0.108 1.998 2.621 0.560 0.529 5.594 5.080 1.015 0.261 8.817 nan 0.334 nan 3.626 4.145 nan 0.526 0.726 1.256 0.523 0.421 0.642 1.244 1.654 0.927 0.239 0.669 0.093 0.606 1.979 2.030 0.376 0.598 0.615 0.272 1209 chr18 53559589 53563281 + 0 NA intron (NR_110755, intron 3 of 3) L2c|LINE|L2 25995 NR_110755 101927273 Hs.434335 NR_110755 ENSG00000260930 LINC01416 - long intergenic non-protein coding RNA 1416 ncRNA nan 0.939 1.248 2.271 1.606 0.780 0.316 1.080 0.198 0.042 0.131 6.648 0.501 0.347 0.119 0.732 0.523 0.158 0.362 0.275 0.724 7.782 5.042 22.999 25.483 0.353 0.511 7.610 10.431 0.468 0.309 5.545 7.773 5.139 4.343 2.362 2.043 nan 1.184 0.061 0.240 0.860 0.121 0.316 6.648 0.106 2.006 2.718 1.246 483 chr11 72336448 72393481 + 0 NA intron (NM_002599, intron 1 of 30) MIR3|SINE|MIR -11460 NM_001243784 5138 Hs.503163 NM_002599 ENSG00000186642 PDE2A CGS-PDE|PDE2A1|PED2A4|cGSPDE phosphodiesterase 2A protein-coding nan 0.572 0.663 0.255 0.513 0.250 0.479 0.080 0.053 0.127 0.069 0.141 0.679 0.089 0.077 2.829 5.250 0.344 0.325 1.064 1.059 0.873 0.331 1.379 1.505 0.966 1.533 1.085 1.178 1.250 1.299 1.105 1.320 0.508 0.652 0.518 1.244 0.464 0.439 1.459 1.106 0.100 0.541 0.479 0.141 0.481 0.183 0.439 0.269 1695 chr21 45757814 45774079 + 0 NA Intergenic Intergenic -6661 NM_001271441 755 Hs.517331 NM_004928 ENSG00000160226 C21orf2 LRRC76|YF5/A2 chromosome 21 open reading frame 2 protein-coding nan 1.301 1.862 0.832 1.167 0.727 0.582 0.386 0.100 0.183 0.197 0.648 3.757 0.485 0.084 1.564 1.267 0.954 1.378 2.873 2.786 nan 0.807 2.109 2.214 0.672 nan 1.863 2.595 2.171 2.420 0.853 0.910 1.330 1.408 0.978 0.867 1.624 1.045 5.177 2.082 0.250 0.395 0.582 0.648 0.730 0.739 0.315 0.289 426 chr11 31828240 31839575 + 0 NA promoter-TSS (NM_001310158) promoter-TSS (NM_001310158) -17 NM_001310158 5080 Hs.270303 NM_000280 ENSG00000007372 PAX6 AN|AN2|D11S812E|FVH1|MGDA|WAGR paired box 6 protein-coding 2.565 0.704 nan 1.084 0.632 0.383 1.416 1.274 0.087 1.044 0.496 0.210 1.044 1.196 0.111 0.743 0.649 5.223 6.323 0.870 0.719 1.624 0.713 0.415 0.327 5.353 7.537 0.111 0.090 0.761 0.465 0.414 0.637 2.719 2.166 0.202 nan 0.967 0.760 0.580 0.102 0.438 2.059 1.416 0.210 1.345 0.009 0.113 0.032 2180 chr6 135496932 135527180 + 0 NA intron (NR_134965, intron 5 of 16) AluJr|SINE|Alu 9603 NM_005375 4602 Hs.606320 NM_005375 ENSG00000118513 MYB Cmyb|c-myb|c-myb_CDS|efg MYB proto-oncogene, transcription factor protein-coding 1.490 1.122 2.161 0.783 0.829 0.465 0.595 0.113 0.101 0.311 0.227 1.171 2.059 0.570 0.157 2.162 2.351 2.315 2.291 2.152 1.752 nan 0.706 3.339 3.297 0.444 0.676 0.943 1.268 1.332 1.227 13.791 20.603 0.905 0.528 1.144 nan 0.621 0.513 0.556 0.613 0.089 0.532 0.595 1.171 0.202 0.301 10.820 0.316 217 chr1 159022260 159029093 + 0 NA TTS (NM_005531) TTS (NM_005531) 20971 NM_004833 9447 Hs.733411 NM_004833 ENSG00000163568 AIM2 PYHIN4 absent in melanoma 2 protein-coding nan nan 0.800 0.026 0.222 0.047 0.075 0.212 0.105 0.091 0.084 0.017 0.316 0.016 0.134 0.390 0.283 4.457 13.232 0.281 nan 0.094 0.036 0.041 0.064 0.597 0.912 0.202 0.180 0.276 0.057 0.229 0.309 0.063 0.079 0.218 0.334 0.461 0.487 0.055 0.091 0.014 0.035 0.075 0.017 0.089 0.096 0.077 505 chr11 96032216 96077733 + 0 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -19628 NR_036125 100422991 NR_036125 ENSG00000266192 MIR1260B mir-1260b microRNA 1260b ncRNA 0.987 nan 1.001 0.236 0.477 0.193 1.060 0.750 0.071 0.227 0.156 0.082 1.298 3.544 0.166 0.829 0.754 1.243 nan 0.806 0.842 0.247 0.113 2.042 2.023 2.599 3.179 0.178 0.183 0.629 0.359 0.391 0.562 1.637 1.695 0.840 nan 0.623 0.551 0.605 0.298 0.372 0.164 1.060 0.082 0.051 0.013 0.163 0.588 1951 chr5 10583238 10608458 + 0 NA intron (NM_001164440, intron 1 of 3) intron (NM_001164440, intron 1 of 3) 31413 NM_001164440 651746 Hs.26039 NM_001164440 ENSG00000164236 ANKRD33B - ankyrin repeat domain 33B protein-coding nan nan nan 0.595 0.826 0.334 0.472 1.319 0.312 0.351 0.319 0.697 nan 0.116 0.085 1.002 1.190 1.017 1.907 1.304 1.399 0.243 0.097 0.421 0.453 nan 3.255 0.858 0.967 2.758 2.467 0.725 1.026 1.297 1.278 0.609 nan 0.978 0.799 0.082 1.948 0.155 0.124 0.472 0.697 0.479 0.512 0.636 0.393 2465 chr9 1791878 1799111 + 0 NA Intergenic Intergenic -219725 NM_003070 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 0.882 1.669 0.735 0.073 0.349 0.111 0.316 0.124 0.068 0.088 0.080 0.116 0.273 0.015 0.109 2.120 1.135 10.846 0.914 0.268 0.538 0.186 0.091 6.178 6.101 2.694 3.826 0.154 0.176 3.712 3.327 0.264 1.594 0.067 0.056 0.043 nan 0.705 0.895 0.036 3.595 0.316 0.116 0.174 0.028 0.408 0.018 2528 chr9 109622069 109633749 + 0 NA intron (NM_021224, intron 1 of 12) intron (NM_021224, intron 1 of 12) 2531 NM_001347997 58499 Hs.370379 NM_021224 ENSG00000148143 ZNF462 Zfp462 zinc finger protein 462 protein-coding 3.437 2.028 2.084 2.864 2.490 1.497 2.913 2.279 0.192 1.502 0.909 2.838 8.605 0.796 0.058 0.225 0.225 1.928 3.685 8.470 6.886 1.731 0.529 0.687 0.677 2.052 2.866 2.552 nan 7.121 8.380 1.016 2.210 2.995 2.438 3.017 4.122 nan 1.454 1.616 1.793 1.079 1.120 2.913 2.838 1.675 0.968 0.763 1.523 2042 chr5 169526806 169535200 + 0 NA Intergenic Intergenic -1914 NM_144769 2299 Hs.87236 NM_012188 ENSG00000168269 FOXI1 FKH10|FKHL10|FREAC-6|FREAC6|HFH-3|HFH3 forkhead box I1 protein-coding nan 0.673 0.706 0.021 0.251 0.114 0.046 0.160 0.057 0.076 0.048 0.043 0.472 0.026 0.067 0.311 0.355 5.229 3.658 0.508 0.358 0.159 0.050 1.551 1.598 0.101 0.231 0.393 0.682 0.411 0.275 0.206 0.292 0.341 0.361 0.080 0.168 1.991 0.955 0.020 0.108 0.068 0.057 0.046 0.043 0.070 0.024 0.118 0.014 125 chr1 55676658 55682790 + 0 NA intron (NM_015306, intron 1 of 67) intron (NM_015306, intron 1 of 67) 1315 NM_015306 23358 Hs.477009 NM_015306 ENSG00000162402 USP24 - ubiquitin specific peptidase 24 protein-coding 5.551 2.759 5.522 2.526 4.437 2.612 3.783 2.172 0.426 1.914 0.997 5.081 6.269 3.486 0.092 4.085 4.991 3.362 6.077 11.396 10.606 4.141 2.065 10.637 11.444 3.434 5.134 5.965 10.125 5.091 5.133 4.578 9.568 2.591 2.447 5.298 nan 2.559 1.438 3.403 3.391 0.436 1.538 3.783 5.081 0.974 2.058 4.667 1.576 2133 chr6 44182305 44195758 + 0 NA intron (NM_001304466, intron 1 of 12) intron (NM_001304466, intron 1 of 12) 1789 NM_001304462 2030 Hs.25450 NM_004955 ENSG00000112759 SLC29A1 ENT1 solute carrier family 29 member 1 (Augustine blood group) protein-coding 2.880 1.655 3.377 1.183 0.923 0.465 1.528 1.106 0.180 1.283 0.600 1.497 1.803 1.841 0.134 20.552 21.937 2.941 2.124 1.804 1.658 8.362 2.402 5.729 6.292 0.830 1.620 3.311 nan 1.976 1.865 3.902 5.859 1.472 1.138 2.358 4.717 1.823 0.721 0.833 0.898 0.383 0.697 1.528 1.497 0.353 1.030 3.614 0.937 1683 chr21 40053629 40074184 + 0 NA Intergenic Intergenic -30202 NM_001136154 2078 Hs.473819 NM_004449 ENSG00000157554 ERG erg-3|p55 ERG, ETS transcription factor protein-coding nan 0.553 0.912 1.163 0.363 0.258 0.138 0.065 0.135 0.435 0.254 1.774 0.523 0.032 0.093 0.348 0.205 0.151 0.245 0.930 1.482 nan 1.088 0.138 0.100 0.126 nan 1.402 1.911 0.444 0.160 0.167 0.172 0.348 0.502 0.139 0.184 3.531 1.800 0.022 0.108 0.070 0.027 0.138 1.774 0.090 0.663 0.038 0.072 1494 chr2 172914181 172969334 + 0 NA intron (NM_199227, intron 6 of 9) intron (NM_199227, intron 6 of 9) -8451 NM_001038493 1745 Hs.407015 NM_178120 ENSG00000144355 DLX1 - distal-less homeobox 1 protein-coding 1.373 0.907 1.100 1.060 12.644 6.522 2.280 0.979 0.181 0.534 0.394 0.988 1.770 1.605 0.102 0.316 0.259 0.809 1.536 0.895 0.819 5.067 1.848 0.513 0.530 1.076 1.552 0.966 1.282 1.102 1.073 0.539 0.709 2.145 0.938 0.304 0.597 2.838 1.489 0.190 0.142 0.145 0.036 2.280 0.988 0.301 0.245 0.245 0.100 887 chr15 72518134 72525298 + 0 NA intron (NM_001206798, intron 1 of 10) MIRc|SINE|MIR 347 NM_001206799 5315 Hs.534770 NM_002654 ENSG00000067225 PKM CTHBP|HEL-S-30|OIP3|PK3|PKM2|TCB|THBP1 pyruvate kinase, muscle protein-coding 4.108 3.461 4.261 2.233 6.037 3.132 3.801 4.661 0.746 2.384 1.907 4.856 10.236 3.374 0.088 2.994 3.853 4.525 8.186 7.874 6.216 4.211 1.247 3.090 3.108 3.636 5.037 4.113 5.683 7.571 14.133 2.311 4.718 2.815 3.137 6.666 6.298 1.714 1.003 1.954 3.729 0.716 2.005 3.801 4.856 1.666 2.449 1.647 2.827 1419 chr2 25473938 25476093 + 0 NA promoter-TSS (NM_001320893) promoter-TSS (NM_001320893) -15 NM_001320893 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 8.113 2.470 9.894 5.937 6.686 3.251 6.281 0.585 0.299 0.203 0.263 5.310 21.567 5.244 0.122 8.393 8.713 6.483 7.252 12.479 11.378 9.063 3.643 24.081 25.434 0.155 0.549 11.540 19.354 8.112 9.967 5.194 8.503 2.363 2.031 11.845 8.779 1.935 1.186 8.730 6.101 0.263 3.524 6.281 5.310 6.161 1.921 2.542 3.733 1407 chr2 16023140 16038093 + 0 NA Intergenic MER5A1|DNA|hAT-Charlie -29905 NR_125783 103752554 Hs.269571 NR_125783 ENSG00000223850 MYCNUT MYCNUN|lncUSMycN MYCN upstream transcript (non-protein coding) ncRNA 0.625 0.529 0.875 0.298 0.146 0.107 0.086 0.076 0.065 0.084 0.105 0.072 0.487 0.044 0.117 0.405 0.510 0.447 1.751 0.280 0.327 0.152 0.092 0.158 0.201 0.179 0.291 0.267 nan 0.646 0.610 23.261 31.859 0.023 0.060 0.462 nan 0.146 0.236 0.072 0.149 0.013 0.027 0.086 0.072 0.078 0.055 18.912 0.057 1696 chr21 46540933 46548945 + 0 NA intron (NM_001346688, intron 1 of 11) AluJb|SINE|Alu -27506 NM_001346687 104 Hs.474018 NM_001112 ENSG00000197381 ADARB1 ADAR2|DRABA2|DRADA2|RED1 adenosine deaminase, RNA specific B1 protein-coding nan 0.950 1.734 0.343 0.345 0.160 2.295 0.161 0.160 0.019 0.095 0.045 1.943 0.028 0.061 0.650 0.675 0.313 0.576 0.736 0.977 nan 0.075 0.382 0.391 0.355 nan 0.163 0.155 10.634 8.485 0.399 0.674 3.062 3.909 4.041 8.043 1.112 0.880 0.063 9.076 0.712 0.137 2.295 0.045 3.009 0.431 0.177 3.405 1166 chr18 31354832 31365820 + 0 NA Intergenic Intergenic 201785 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 additional sex combs like 3, transcriptional regulator protein-coding nan 0.972 1.000 1.984 1.112 0.555 0.501 0.041 0.059 0.686 0.499 10.215 0.683 0.038 0.083 0.265 0.244 0.169 0.232 8.019 9.793 2.004 0.589 0.138 0.127 0.409 0.605 nan 1.919 0.945 0.697 0.087 0.102 3.398 3.411 1.084 2.547 3.130 1.923 0.126 1.359 0.921 0.101 0.501 10.215 0.053 0.176 0.027 0.532 902 chr15 91352393 91363718 + 0 NA intron (NM_001287248, intron 21 of 21) intron (NM_001287248, intron 21 of 21) -53767 NM_002569 5045 Hs.513153 NM_002569 ENSG00000140564 FURIN FUR|PACE|PCSK3|SPC1 furin, paired basic amino acid cleaving enzyme protein-coding nan nan nan 0.202 0.461 0.283 0.520 0.133 0.099 0.502 0.338 1.080 1.502 0.067 0.073 5.012 6.178 1.310 1.008 3.037 3.093 nan 0.174 2.061 2.060 0.470 0.757 0.486 0.719 nan 3.186 4.184 5.497 0.273 0.236 0.734 nan 1.819 0.989 0.269 0.874 0.051 0.313 0.520 1.080 0.537 0.167 2.719 0.381 1481 chr2 145106922 145144362 + 0 NA Intergenic MLT1L|LTR|ERVL-MaLR -35541 NM_001284238 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 1.145 nan 1.563 0.099 0.301 0.136 0.194 0.344 0.069 0.130 0.120 0.153 0.312 0.073 0.095 0.310 0.276 2.397 2.670 0.279 0.327 0.135 0.077 0.243 0.277 0.981 1.435 0.326 0.345 0.622 0.354 0.144 0.327 0.042 0.046 0.419 0.621 0.337 0.372 0.043 0.038 0.013 0.049 0.194 0.153 0.135 0.034 0.087 0.145 1679 chr21 36584164 36613480 + 0 NA Intergenic Intergenic -177227 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha runt related transcription factor 1 protein-coding 0.774 0.714 1.158 0.482 1.340 0.509 0.415 0.993 0.137 0.272 0.102 2.510 2.158 0.037 0.051 1.048 1.304 0.924 1.751 2.713 2.320 3.329 0.932 1.019 1.039 0.146 0.277 4.022 3.645 0.608 0.294 0.276 0.450 0.127 0.165 0.156 0.213 nan 0.981 2.321 2.938 0.026 0.062 0.415 2.510 0.016 0.139 0.128 0.047 1199 chr18 51771582 51782706 + 0 NA Intergenic AluSc8|SINE|Alu -18705 NM_007195 11201 Hs.438533 NM_007195 ENSG00000101751 POLI RAD30B|RAD3OB DNA polymerase iota protein-coding nan 1.789 1.813 1.135 1.775 0.834 2.377 0.120 0.087 0.328 0.240 3.828 2.065 0.039 0.104 0.588 0.654 0.476 1.496 4.794 5.820 7.023 2.821 0.333 0.408 0.272 0.368 2.447 2.918 1.073 0.917 0.543 0.857 4.955 5.514 0.450 0.540 nan 2.436 2.075 0.695 1.335 0.634 2.377 3.828 0.578 0.255 0.773 0.146 1151 chr18 3491058 3528263 + 0 NA intron (NM_001003809, intron 7 of 9) intron (NM_001003809, intron 7 of 9) 43412 NR_110429 100505592 Hs.635114 NR_110428 ENSG00000266835 GAPLINC LINC01540 gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA ncRNA 1.380 1.837 1.271 0.380 0.508 0.304 0.145 0.162 0.086 0.357 0.268 1.776 nan 2.074 0.185 1.112 0.724 1.703 2.148 2.103 2.062 nan 0.138 0.479 0.488 0.533 nan 1.734 2.407 nan 0.468 0.587 0.949 0.695 1.014 0.384 nan nan 1.287 3.392 0.359 0.146 0.897 0.145 1.776 0.164 0.684 0.641 0.202 2134 chr6 44204746 44219539 + 0 NA Intergenic Intergenic -1761 NM_001271970 3326 Hs.509736 NM_007355 ENSG00000096384 HSP90AB1 D6S182|HSP84|HSP90B|HSPC2|HSPCB heat shock protein 90 alpha family class B member 1 protein-coding 3.414 1.933 2.467 2.414 3.254 1.659 2.769 1.105 0.245 1.381 0.858 2.943 5.653 2.054 0.161 3.013 4.025 2.374 3.196 4.823 4.694 8.558 4.493 7.722 8.236 1.498 2.198 5.320 nan 5.923 5.975 3.653 6.607 2.849 3.535 5.051 5.842 2.309 1.399 1.716 1.937 0.342 1.227 2.769 2.943 0.859 1.595 1.162 1.738 1901 chr4 77116774 77136334 + 0 NA intron (NM_005506, intron 1 of 11) L1MA8|LINE|L1 8498 NM_005506 950 Hs.349656 NM_005506 ENSG00000138760 SCARB2 AMRF|CD36L2|EPM4|HLGP85|LGP85|LIMP-2|LIMPII|SR-BII scavenger receptor class B member 2 protein-coding 2.874 1.828 2.930 3.496 2.895 1.527 1.340 1.078 0.115 1.040 0.470 2.282 3.207 0.615 0.086 2.473 3.907 1.352 2.383 3.222 2.811 3.569 1.245 2.074 1.965 2.576 3.070 7.409 8.809 4.777 4.649 1.331 2.368 2.526 2.600 3.910 8.971 2.341 1.311 2.896 4.700 0.649 3.257 1.340 2.282 0.342 2.512 1.916 3.264 924 chr16 2511341 2551533 + 0 NA intron (NM_020705, intron 1 of 6) intron (NM_020705, intron 1 of 6) 6290 NM_020705 57465 Hs.353087 NM_020705 ENSG00000162065 TBC1D24 DFNA65|DFNB86|DOORS|EIEE16|FIME|TLDC6 TBC1 domain family member 24 protein-coding 3.388 nan 2.531 1.879 2.200 1.112 0.922 0.338 0.140 1.061 0.486 1.722 4.800 0.461 0.062 4.461 5.735 0.538 0.746 3.298 3.593 nan 1.070 1.552 1.546 1.991 nan 2.164 2.726 5.489 6.500 1.913 3.111 1.973 1.793 2.364 3.831 1.798 0.932 3.243 7.007 0.746 1.784 0.922 1.722 1.525 0.713 1.703 2.164 124 chr1 55514773 55534285 + 0 NA intron (NR_110451, intron 7 of 9) intron (NR_110451, intron 7 of 9) 18634 NR_110451 255738 Hs.18844 NM_174936 ENSG00000169174 PCSK9 FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9 proprotein convertase subtilisin/kexin type 9 protein-coding 1.602 1.930 4.229 0.138 0.282 0.123 0.249 0.160 0.082 0.153 0.159 0.092 5.894 0.096 0.101 0.311 0.331 0.245 0.469 0.689 0.791 0.542 0.158 0.445 0.450 0.442 1.018 0.442 0.804 1.270 1.526 0.265 0.277 0.348 0.324 0.408 nan 1.013 0.690 1.040 0.173 0.103 0.106 0.249 0.092 0.339 0.241 0.055 0.267 1061 chr17 37599859 37627831 + 0 NA Intergenic AluSp|SINE|Alu -3919 NM_016507 51755 Hs.345028 NM_015083 ENSG00000167258 CDK12 CRK7|CRKR|CRKRS cyclin dependent kinase 12 protein-coding nan 1.666 1.455 0.716 2.115 1.101 1.105 0.785 0.372 0.785 0.534 1.208 2.423 0.749 0.117 2.314 1.986 2.357 3.162 nan 2.587 2.841 1.526 8.047 8.784 1.537 2.121 2.712 4.378 nan 3.203 1.922 2.783 1.371 2.148 2.486 2.778 1.731 0.996 0.678 0.833 0.228 0.651 1.105 1.208 0.315 0.537 0.551 0.696 836 chr14 100695117 100714264 + 0 NA promoter-TSS (NM_003403) promoter-TSS (NM_003403) -412 NM_003403 7528 Hs.388927 NM_003403 ENSG00000100811 YY1 DELTA|INO80S|NF-E1|UCRBP|YIN-YANG-1 YY1 transcription factor protein-coding 3.662 1.736 2.010 2.465 2.011 1.184 2.084 1.575 0.317 1.252 0.568 2.287 3.279 1.671 0.135 1.757 2.035 2.495 3.546 4.247 4.246 1.783 0.966 2.825 2.923 1.627 2.307 2.536 3.954 3.908 4.121 2.653 4.494 1.885 2.375 1.964 1.926 1.100 0.707 1.944 2.060 0.558 1.788 2.084 2.287 0.325 0.628 2.486 0.575 2296 chr7 103497046 103511977 + 0 NA intron (NM_173054, intron 2 of 63) MamRep137|DNA|TcMar? 125452 NM_005045 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding nan 1.278 1.154 0.683 0.885 0.420 0.180 0.166 0.050 2.393 1.056 0.836 2.030 0.055 0.159 0.436 0.337 0.633 1.000 1.150 1.572 1.884 1.244 1.582 1.461 0.484 0.643 2.267 2.728 0.815 0.585 0.484 0.515 1.803 1.745 0.667 nan 2.155 1.279 0.030 0.433 0.509 0.138 0.180 0.836 0.301 0.869 0.205 0.213 2300 chr7 105649199 105677574 + 0 NA intron (NM_152750, intron 14 of 18) intron (NM_152750, intron 14 of 18) 59729 NM_152750 222256 Hs.150120 NM_152750 ENSG00000128536 CDHR3 CDH28 cadherin related family member 3 protein-coding nan 0.699 1.209 0.090 0.364 0.224 0.860 1.247 0.119 0.299 0.224 0.303 0.641 0.065 0.163 0.576 0.645 0.307 0.358 0.492 0.549 0.683 0.198 0.164 0.149 3.632 4.356 0.262 0.313 0.506 0.395 0.370 0.679 0.420 0.550 0.533 nan 0.603 0.589 1.251 0.321 0.071 0.120 0.860 0.303 0.464 0.032 0.250 0.192 2428 chr8 128948084 128953509 + 0 NA intron (NR_003367, intron 2 of 8) intron (NR_003367, intron 2 of 8) 10173 NR_103558 641384 Hs.629674 NM_001037234 ENSG00000280055 TMEM75 - transmembrane protein 75 ncRNA nan nan nan 0.211 0.640 0.217 0.094 0.578 0.176 0.173 0.152 0.132 nan 0.170 0.060 1.964 2.198 0.611 1.006 0.425 0.536 0.811 0.332 nan nan 0.608 0.798 1.277 1.476 0.548 0.447 0.356 0.405 0.157 0.156 0.393 0.680 0.348 0.306 0.279 0.149 0.107 0.043 0.094 0.132 6.133 0.186 0.079 0.154 1875 chr3 190651516 190661400 + 0 NA Intergenic L1MD2|LINE|L1 60739 NR_024343 100170222 Hs.717310 NR_024343 SNAR-I snaR-3 small ILF3/NF90-associated RNA I snRNA 3.224 1.149 0.990 0.213 0.302 0.113 0.079 0.122 0.116 0.096 0.158 0.048 nan 0.131 0.111 1.033 1.465 1.359 0.386 0.213 0.378 0.580 0.197 0.472 0.327 0.211 0.327 0.377 0.509 14.369 13.542 0.666 1.055 0.301 0.337 0.973 2.339 0.238 0.349 0.028 0.117 0.223 0.024 0.079 0.048 0.020 0.051 0.459 0.688 2357 chr8 48870757 48875338 + 0 NA promoter-TSS (NM_006904) promoter-TSS (NM_006904) 284 NM_005914 4173 Hs.460184 NM_005914 ENSG00000104738 MCM4 CDC21|CDC54|NKCD|NKGCD|P1-CDC21|hCdc21 minichromosome maintenance complex component 4 protein-coding 9.987 nan 6.076 6.304 7.419 3.571 5.580 2.998 0.559 3.462 1.329 6.735 13.851 4.595 0.173 8.268 6.738 8.619 12.092 13.563 12.905 9.806 8.267 6.790 6.685 5.309 6.524 9.787 17.740 9.802 12.146 6.603 9.923 8.529 11.542 10.481 7.901 6.265 3.043 4.918 5.406 1.888 3.407 5.580 6.735 0.483 5.240 2.355 3.052 1389 chr2 2287972 2303123 + 0 NA intron (NM_001329851, intron 1 of 23) intron (NM_001329851, intron 1 of 23) -27457 NR_024468 730811 Hs.629472 NR_024468 ENSG00000225619 MYT1L-AS1 - MYT1L antisense RNA 1 ncRNA 0.596 0.738 0.601 0.147 0.493 0.295 0.430 0.069 0.054 0.433 0.321 0.649 1.995 0.050 0.107 0.391 0.546 0.343 0.367 0.731 0.869 0.995 0.380 0.237 0.174 0.778 1.045 1.086 1.113 0.693 0.465 0.320 0.360 0.390 0.447 0.572 1.060 1.353 0.798 4.227 0.404 0.070 0.134 0.430 0.649 0.258 0.323 0.084 0.017 2274 chr7 73180915 73186265 + 0 NA 3' UTR (NM_001306, exon 1 of 1) 3' UTR (NM_001306, exon 1 of 1) 1010 NM_001306 1365 Hs.647023 NM_001306 ENSG00000165215 CLDN3 C7orf1|CPE-R2|CPETR2|HRVP1|RVP1 claudin 3 protein-coding nan 2.516 0.922 3.844 4.735 2.114 2.118 0.114 0.103 4.070 1.786 7.541 5.588 0.439 0.128 4.725 6.743 1.782 nan 6.268 4.950 6.138 2.771 0.338 0.271 0.159 nan 6.664 10.144 1.418 1.581 2.809 5.270 2.935 2.235 0.150 0.681 3.192 1.676 6.186 10.698 0.499 0.933 2.118 7.541 0.273 0.857 2.429 0.045 1054 chr17 36606788 36622214 + 0 NA exon (NM_001199417, exon 2 of 24) exon (NM_001199417, exon 2 of 24) 29781 NM_001199417 57636 Hs.374446 NM_020876 ENSG00000275832 ARHGAP23 - Rho GTPase activating protein 23 protein-coding nan 1.325 1.235 0.379 1.060 0.552 0.787 1.875 0.332 0.628 0.333 0.367 0.886 0.675 0.068 0.676 1.136 0.787 2.155 nan 1.128 0.796 0.336 1.501 1.534 0.407 0.886 1.429 2.010 nan 5.118 0.457 0.601 0.409 0.459 1.456 2.735 0.922 0.645 0.627 0.384 0.046 0.119 0.787 0.367 0.484 1.709 0.084 0.457 355 chr10 32034775 32050534 + 0 NA Intergenic Intergenic 155200 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 2.002 1.733 2.374 0.473 1.515 0.937 1.104 1.161 0.317 1.544 0.596 1.207 5.434 0.370 0.079 0.722 1.344 0.703 nan 2.886 2.521 3.293 1.069 1.921 1.857 3.327 4.494 0.853 1.609 1.627 1.801 0.459 0.662 2.280 1.988 1.065 1.379 2.502 1.182 2.851 0.681 0.708 1.243 1.104 1.207 0.857 2.142 0.359 0.500 946 chr16 29814971 29821904 + 0 NA exon (NM_001042539, exon 2 of 6) exon (NM_001042539, exon 2 of 6) 579 NM_002383 4150 Hs.23650 NM_002383 ENSG00000103495 MAZ PUR1|Pur-1|SAF-1|SAF-2|SAF-3|ZF87|ZNF801|Zif87 MYC associated zinc finger protein protein-coding 5.238 3.137 nan 7.282 6.019 3.023 6.638 1.348 0.138 1.810 1.115 7.724 14.741 4.807 0.133 4.892 5.918 3.866 5.516 7.005 6.514 nan 3.718 9.260 8.503 3.176 4.073 8.512 12.041 6.672 7.670 4.088 8.497 6.174 6.322 4.830 5.808 2.790 1.285 5.939 4.760 2.623 4.149 6.638 7.724 2.670 4.519 4.547 2.441 1233 chr18 74531413 74537176 + 0 NA promoter-TSS (NM_001306089) promoter-TSS (NM_001306089) -43 NR_040024 100131655 Hs.385806 NR_040024 ENSG00000264278 LOC100131655 - uncharacterized LOC100131655 ncRNA nan nan 4.458 4.803 4.768 2.223 8.069 1.153 0.111 2.585 1.241 13.935 8.311 3.556 0.078 5.585 6.826 8.447 7.868 10.531 nan 12.504 7.210 16.106 15.261 2.387 3.075 10.882 18.456 6.063 6.580 2.834 5.918 10.478 9.594 4.658 3.298 2.532 1.466 4.105 2.948 2.491 2.992 8.069 13.935 0.468 2.415 1.341 1.548 922 chr16 2279321 2286869 + 0 NA exon (NM_004424, exon 7 of 14) exon (NM_004424, exon 7 of 14) -3373 NM_001374 1775 Hs.103503 NM_001374 ENSG00000167968 DNASE1L2 DNAS1L2 deoxyribonuclease 1 like 2 protein-coding 0.761 nan 2.625 4.341 0.405 0.148 0.207 0.049 0.085 0.186 0.139 0.205 0.734 0.191 0.082 0.306 0.310 0.200 0.351 1.324 1.392 nan 0.266 0.403 0.318 0.210 nan 1.431 1.630 0.351 0.324 0.201 0.211 0.271 0.282 0.256 0.358 0.738 0.567 2.310 8.193 0.063 0.314 0.207 0.205 0.064 0.202 0.013 0.050 1810 chr3 133190412 133198255 + 0 NA TTS (NM_003571) TTS (NM_003571) 15657 NR_135277 85003 Hs.659202 NR_135276 ENSG00000249993 BFSP2-AS1 - BFSP2 antisense RNA 1 ncRNA 1.698 nan nan 1.433 10.000 4.807 0.718 0.359 0.164 0.944 0.537 0.497 4.838 0.042 0.056 0.367 0.181 0.647 2.588 0.692 0.956 5.122 1.192 0.696 0.727 1.598 1.795 6.407 5.198 nan 1.751 0.192 0.272 0.720 1.409 0.984 3.165 1.821 1.053 6.813 5.258 0.255 0.140 0.718 0.497 1.857 3.172 0.051 0.962 115 chr1 51699994 51704549 + 0 NA 5' UTR (NM_014372, exon 1 of 3) 5' UTR (NM_014372, exon 1 of 3) 326 NM_014372 26994 Hs.309641 NM_014372 ENSG00000123091 RNF11 CGI-123|SID1669 ring finger protein 11 protein-coding 5.653 5.534 6.430 4.398 3.906 1.977 3.072 4.284 0.478 5.591 2.072 3.502 11.687 3.200 0.165 2.375 3.923 5.309 6.395 17.053 13.066 9.975 3.282 11.222 11.946 5.207 5.424 9.015 14.800 7.084 7.366 1.457 4.016 5.019 5.642 8.931 12.104 4.874 2.908 4.639 4.345 0.837 2.291 3.072 3.502 0.745 3.184 0.957 2.746 1458 chr2 95957257 95977369 + 0 NA intron (NM_013434, intron 1 of 8) MIRb|SINE|MIR 4241 NM_013434 30818 Hs.437376 NM_013434 ENSG00000115041 KCNIP3 CSEN|DREAM|KCHIP3 potassium voltage-gated channel interacting protein 3 protein-coding 1.382 2.286 4.871 0.831 0.701 0.294 1.952 0.064 0.040 0.735 0.477 1.378 6.563 0.032 0.057 1.454 2.696 0.421 0.554 2.152 1.950 2.253 0.588 1.489 1.446 0.290 0.461 0.510 0.663 0.754 0.891 1.043 1.240 0.893 0.677 0.606 0.948 0.928 0.547 5.545 1.598 0.309 0.071 1.952 1.378 1.516 0.602 0.799 0.234 1352 chr19 48421033 48463194 + 0 NA promoter-TSS (NR_024218) promoter-TSS (NR_024218) -685 NR_024218 100170219 Hs.560634 NR_024218 SNAR-C4 - small ILF3/NF90-associated RNA C4 snRNA 1.582 1.487 1.617 0.277 0.871 0.533 0.503 0.182 0.309 0.150 0.268 0.173 0.524 12.007 0.790 0.551 0.379 0.255 0.254 0.547 0.659 1.118 0.377 0.537 0.496 0.584 0.955 0.573 0.628 1.054 0.365 0.341 0.455 0.193 0.360 0.759 1.589 0.681 0.742 0.074 0.166 0.095 0.109 0.503 0.173 0.124 0.344 0.077 0.280 2593 chrX 53109558 53124709 + 0 NA 3' UTR (NM_022117, exon 7 of 7) 3' UTR (NM_022117, exon 7 of 7) 5591 NM_022117 64061 Hs.136164 NM_022117 ENSG00000184205 TSPYL2 CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX TSPY like 2 protein-coding 1.733 1.732 0.823 1.361 2.685 1.398 0.825 0.677 0.109 0.808 0.498 0.999 2.837 1.774 0.067 0.750 0.974 1.505 2.161 3.233 2.474 2.597 0.798 1.937 1.955 0.810 1.210 2.345 3.256 2.134 2.042 0.828 1.551 1.598 1.655 1.457 2.707 1.065 0.528 0.831 0.617 0.339 0.707 0.825 0.999 0.337 2.645 0.653 0.459 1609 chr20 35722683 35725481 + 0 NA intron (NM_183404, intron 1 of 20) CpG 536 NM_001323282 5933 Hs.207745 NM_002895 ENSG00000080839 RBL1 CP107|PRB1|p107 RB transcriptional corepressor like 1 protein-coding 9.574 9.524 6.456 11.297 8.726 3.685 6.753 3.419 0.459 3.182 1.733 9.018 18.690 4.633 0.163 15.648 12.266 8.427 11.392 13.013 nan 18.658 15.489 16.169 16.909 7.756 10.622 12.071 20.095 13.839 14.650 9.985 11.395 5.048 6.091 14.055 9.010 3.470 2.360 5.608 4.884 1.561 4.576 6.753 9.018 1.978 3.801 3.611 4.193 2302 chr7 111800109 111821175 + 0 NA intron (NM_014705, intron 1 of 51) Tigger15a|DNA|TcMar-Tigger 35820 NM_014705 9732 Hs.654652 NM_014705 ENSG00000128512 DOCK4 - dedicator of cytokinesis 4 protein-coding nan 0.882 1.058 0.262 1.082 0.518 0.932 0.128 0.061 0.597 0.551 0.995 0.534 0.062 0.104 0.407 0.410 0.260 0.390 0.758 0.873 2.601 0.789 0.211 0.264 2.230 2.857 0.484 0.485 1.317 0.937 0.170 0.390 1.567 2.576 0.789 2.585 1.645 1.135 0.226 0.157 0.380 0.064 0.932 0.995 0.124 0.126 0.052 0.585 1229 chr18 74161704 74168285 + 0 NA intron (NM_014643, intron 2 of 7) intron (NM_014643, intron 2 of 7) -38614 NR_136504 101927989 Hs.665186 NR_136504 ENSG00000265778 LOC101927989 - uncharacterized LOC101927989 ncRNA nan nan 0.988 0.574 0.931 0.388 1.894 0.046 0.110 2.215 0.871 3.633 0.347 0.197 0.124 3.042 2.941 6.617 7.543 1.190 nan 11.139 8.840 1.326 1.420 0.062 0.160 5.065 9.599 2.974 2.348 1.660 2.947 3.749 3.975 4.706 5.140 2.481 1.587 0.030 1.428 0.318 0.361 1.894 3.633 0.030 2.318 1.509 0.808 2332 chr7 148841332 148846036 + 0 NA promoter-TSS (NM_170686) promoter-TSS (NM_170686) -876 NM_170686 57541 Hs.632032 NM_020781 ENSG00000197024 ZNF398 P51|P71|ZER6 zinc finger protein 398 protein-coding 3.467 2.848 2.910 5.709 3.640 2.185 4.147 1.544 0.239 2.393 1.406 7.075 9.916 5.259 0.244 11.747 11.865 7.408 13.304 4.285 4.264 8.072 2.895 16.932 17.443 2.243 3.058 6.102 8.437 5.229 5.452 8.265 10.947 6.445 5.137 6.553 7.681 4.244 nan 2.111 4.010 1.217 0.894 4.147 7.075 1.171 3.475 5.033 1.787 1204 chr18 53113947 53181047 + 0 NA TTS (NR_039754) TTS (NR_039754) 1045 NR_039754 100616290 NR_039754 ENSG00000264571 MIR4529 - microRNA 4529 ncRNA nan 0.824 0.941 0.310 0.836 0.490 0.358 0.508 0.108 0.583 0.350 0.788 0.455 2.295 0.110 0.561 0.482 2.102 2.495 1.039 1.084 5.039 2.524 0.650 0.674 1.234 1.457 0.601 0.610 0.466 0.247 0.637 0.866 2.141 2.483 0.287 0.559 nan 1.819 0.054 0.341 0.600 0.170 0.358 0.788 0.065 0.623 0.682 0.177 1741 chr22 46078820 46096106 + 0 NA intron (NM_013236, intron 2 of 11) intron (NM_013236, intron 2 of 11) 19785 NM_001167621 25814 Hs.475125 NM_013236 ENSG00000130638 ATXN10 E46L|HUMEEP|SCA10 ataxin 10 protein-coding 0.805 0.619 nan 0.155 0.357 0.335 0.206 0.614 0.131 0.100 0.132 0.099 0.309 0.402 0.151 0.321 0.356 1.765 6.737 0.382 0.440 0.293 0.160 0.583 0.492 0.553 0.810 0.369 0.481 0.403 0.226 0.248 0.265 0.141 0.197 0.219 0.437 0.441 0.492 0.044 0.103 0.039 0.096 0.206 0.099 0.044 0.053 0.080 0.122 592 chr12 29300296 29308954 + 0 NA intron (NM_001271783, intron 1 of 11) intron (NM_001271783, intron 1 of 11) 2689 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding nan nan nan 4.170 0.207 0.055 2.566 1.196 0.130 0.800 0.563 0.070 2.150 0.289 0.110 2.336 2.928 0.717 1.155 9.531 7.335 0.141 0.055 12.885 13.473 7.793 8.615 0.977 1.530 2.520 2.745 2.426 3.686 0.402 0.270 0.491 0.819 0.268 0.355 8.219 6.736 0.065 0.311 2.566 0.070 0.693 0.059 1.695 0.084 2114 chr6 35435057 35476736 + 0 NA intron (NM_003214, intron 1 of 12) intron (NM_003214, intron 1 of 12) 8965 NM_003214 7005 Hs.485205 NM_003214 ENSG00000007866 TEAD3 DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5 TEA domain transcription factor 3 protein-coding nan 1.554 nan 1.421 0.764 0.388 1.494 0.898 0.262 0.282 0.168 2.490 1.699 0.816 0.104 2.152 2.723 1.583 nan nan 1.381 1.546 0.755 2.649 2.788 1.217 1.790 5.146 6.315 2.101 2.078 1.694 2.771 0.636 0.538 2.329 3.258 0.678 0.558 1.412 0.395 0.110 0.361 1.494 2.490 0.699 0.586 1.269 1.559 1836 chr3 168424372 168429565 + 0 NA intron (NR_021485, intron 5 of 15) intron (NR_021485, intron 5 of 15) 157326 NR_030294 693136 NR_030294 ENSG00000207717 MIR551B MIRN551B|mir-551b microRNA 551b ncRNA 0.979 0.958 1.157 0.285 0.253 0.154 0.841 0.272 0.136 0.631 0.421 0.391 0.235 0.021 0.086 0.365 0.227 0.176 0.135 0.527 0.621 15.284 5.459 0.206 0.335 1.379 1.630 nan 0.843 nan 0.745 0.193 0.266 1.268 1.816 0.448 0.748 0.461 0.568 0.010 0.051 0.073 0.061 0.841 0.391 0.232 0.095 0.168 2472 chr9 3464182 3482210 + 0 NA intron (NM_001282116, intron 1 of 16) intron (NM_001282116, intron 1 of 16) 16291 NM_001282117 5991 Hs.136829 NM_002919 ENSG00000080298 RFX3 - regulatory factor X3 protein-coding 0.942 1.806 1.520 0.165 0.808 0.291 0.405 0.348 0.125 0.733 0.661 0.222 0.434 0.216 0.082 0.393 0.340 1.325 2.163 0.475 0.566 1.722 0.531 0.331 0.298 3.462 4.240 0.389 0.386 0.466 0.198 0.225 0.451 2.422 3.627 0.382 nan 1.380 0.856 0.064 0.140 0.628 0.086 0.405 0.222 0.048 0.191 0.155 0.062 336 chr10 3815281 3831058 + 0 NA intron (NR_027653, intron 2 of 3) L3|LINE|CR1 4304 NM_001160125 1316 Hs.4055 NM_001300 ENSG00000067082 KLF6 BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 Kruppel like factor 6 protein-coding 1.558 2.569 2.580 3.025 3.677 1.929 2.982 5.317 0.521 1.888 0.723 4.030 5.134 7.452 0.131 2.645 3.320 4.005 7.549 3.820 2.922 8.652 8.772 5.238 5.223 1.715 2.011 2.695 5.775 1.522 2.316 0.838 1.723 2.858 3.032 3.075 3.173 1.869 1.102 0.500 2.233 0.445 0.924 2.982 4.030 0.331 1.165 0.458 1.096 1256 chr19 7552999 7571056 + 0 NA promoter-TSS (NM_198534) promoter-TSS (NM_198534) -418 NM_198534 374877 Hs.631862 NM_198534 ENSG00000198723 C19orf45 - chromosome 19 open reading frame 45 protein-coding 1.044 0.934 1.446 1.073 1.104 0.511 0.303 0.149 0.089 0.425 0.257 1.229 1.723 0.626 0.092 1.341 1.378 0.710 1.199 1.798 1.647 2.400 0.725 1.013 1.008 0.222 0.415 2.033 nan 0.988 0.831 0.589 0.537 0.635 0.571 0.442 1.115 2.093 1.260 1.053 0.379 0.058 0.287 0.303 1.229 0.373 0.634 0.083 0.242 821 chr14 81683666 81692169 + 0 NA promoter-TSS (NM_001278940) promoter-TSS (NM_001278940) -342 NM_201595 2957 Hs.592334 NM_015859 ENSG00000165417 GTF2A1 TF2A1|TFIIA|TFIIA-42|TFIIAL general transcription factor IIA subunit 1 protein-coding nan 3.142 5.143 7.526 5.733 2.942 5.735 3.935 0.322 1.878 1.012 4.672 11.216 3.594 0.131 5.375 5.384 6.054 8.013 12.335 10.947 6.562 3.868 16.440 17.191 4.727 6.043 9.073 12.684 10.298 10.546 3.278 5.021 6.991 7.468 5.539 5.904 5.665 3.213 8.470 6.186 1.441 4.874 5.735 4.672 1.431 2.069 1.947 2.276 658 chr12 107152997 107171229 + 0 NA intron (NR_040246, intron 1 of 3) intron (NR_040246, intron 1 of 3) -6221 NM_001330146 55188 Hs.131306 NM_018157 ENSG00000111785 RIC8B RIC8|hSyn RIC8 guanine nucleotide exchange factor B protein-coding 1.701 1.190 nan 0.952 1.270 0.791 1.085 0.920 0.132 0.461 0.367 0.933 2.569 5.393 0.211 1.067 0.975 1.727 2.128 1.981 1.877 2.490 1.272 6.280 6.486 1.888 2.280 1.629 2.023 1.504 1.276 0.509 1.024 2.316 2.871 0.976 1.192 1.755 1.075 0.682 1.086 0.432 0.968 1.085 0.933 0.328 0.746 0.439 0.287 183 chr1 153601764 153610888 + 0 NA promoter-TSS (NM_001206612) promoter-TSS (NM_001206612) -132 NM_001317077 26097 Hs.611057 NM_015607 ENSG00000160679 CHTOP C1orf77|FL-SRAG|FOP|SRAG|SRAG-3|SRAG-5|pp7704 chromatin target of PRMT1 protein-coding nan nan 3.003 2.277 2.017 0.778 2.152 1.574 0.310 1.752 0.831 2.301 7.868 1.912 0.166 3.057 2.509 3.978 5.523 3.993 nan 4.141 2.781 5.232 5.571 1.958 2.857 2.579 4.139 3.534 3.742 3.804 4.972 2.019 2.966 5.467 6.613 1.395 0.842 1.281 2.821 0.559 1.056 2.152 2.301 0.504 1.991 1.515 2.233 2576 chr9 139580241 139593637 + 0 NA Intergenic CpG -5028 NM_006412 10555 Hs.320151 NM_006412 ENSG00000169692 AGPAT2 1-AGPAT2|BSCL|BSCL1|LPAAB|LPAAT-beta 1-acylglycerol-3-phosphate O-acyltransferase 2 protein-coding nan 3.653 4.755 2.950 0.414 0.277 0.811 0.252 0.084 0.853 0.467 0.436 3.441 0.321 0.059 0.608 1.768 1.022 1.506 2.476 2.392 nan 0.670 0.569 0.632 0.328 0.613 5.644 5.936 3.377 3.902 0.439 0.620 1.722 1.232 0.394 0.597 2.147 1.021 4.506 0.646 0.368 0.377 0.811 0.436 0.623 0.788 0.185 0.101 1805 chr3 129294239 129298439 + 0 NA intron (NM_015103, intron 9 of 35) intron (NM_015103, intron 9 of 35) 29111 NM_001308262 132243 Hs.97358 NM_153833 ENSG00000178804 H1FOO H1.8|H1oo|osH1 H1 histone family member O, oocyte specific protein-coding 2.982 nan 4.079 3.326 1.552 0.840 0.185 0.509 0.076 2.137 1.061 3.224 0.496 0.233 0.071 0.645 1.028 0.227 0.412 4.151 4.033 3.804 1.540 0.570 0.651 1.256 nan 10.314 9.636 1.879 2.473 0.691 0.336 1.194 1.517 2.102 3.538 2.096 1.249 0.105 0.439 0.499 0.646 0.185 3.224 3.978 4.671 0.118 2.066 1271 chr19 14116093 14118471 + 0 NA promoter-TSS (NM_002918) promoter-TSS (NM_002918) -148 NM_002918 5989 Hs.655215 NM_002918 ENSG00000132005 RFX1 EFC|RFX regulatory factor X1 protein-coding 9.225 5.227 7.810 6.851 7.632 4.158 6.026 2.141 0.338 4.014 0.493 7.659 10.522 4.853 0.187 5.282 9.944 7.485 11.118 11.927 10.330 14.041 23.480 23.893 23.835 6.065 8.061 11.448 21.805 12.437 14.089 3.509 4.885 15.004 11.476 14.699 10.517 6.007 4.530 3.839 3.913 1.477 2.276 6.026 7.659 2.114 4.201 1.205 3.936 1663 chr21 16421810 16439125 + 0 NA intron (NM_003489, intron 1 of 3) MIR3|SINE|MIR 6659 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 RIP140 nuclear receptor interacting protein 1 protein-coding 2.896 1.106 nan 0.695 1.759 0.859 0.607 0.009 0.752 0.356 0.014 0.235 0.970 0.108 0.615 0.561 1.223 1.262 2.521 2.439 1.503 0.588 0.131 0.127 0.169 0.269 1.095 1.743 4.209 4.458 0.689 1.944 4.221 3.264 3.850 4.626 1.297 1.075 0.036 0.058 1.041 2.973 0.607 0.014 0.011 0.006 0.721 1.638 952 chr16 30401130 30421103 + 0 NA 3' UTR (NM_001214906, exon 3 of 3) 3' UTR (NM_001214906, exon 3 of 3) 4376 NM_152652 197407 Hs.513501 NM_152652 ENSG00000180035 ZNF48 ZNF553 zinc finger protein 48 protein-coding 2.937 1.485 1.773 3.118 2.375 1.185 2.900 0.470 0.265 0.431 0.285 2.608 5.713 2.056 0.112 1.818 2.128 2.045 2.696 3.195 3.124 6.407 1.905 2.217 2.185 1.177 1.950 5.435 7.691 2.660 2.849 0.911 1.732 2.905 2.616 1.981 2.137 1.906 0.920 1.971 0.647 0.640 0.804 2.900 2.608 0.857 1.589 0.425 0.471 783 chr14 38050915 38070284 + 0 NA exon (NM_004496, exon 2 of 2) exon (NM_004496, exon 2 of 2) 3726 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 8.583 8.373 6.232 9.407 4.572 2.552 1.266 0.112 0.117 3.670 1.887 4.786 21.177 1.275 0.112 0.347 0.384 5.308 7.510 9.447 8.205 8.474 3.424 1.898 2.042 2.523 3.065 7.086 10.806 2.044 2.247 2.119 4.689 12.056 10.026 1.643 2.017 3.808 2.353 7.430 11.064 3.486 3.329 1.266 4.786 0.718 3.799 2.196 0.630 1592 chr20 22460533 22517969 + 0 NA Intergenic L2c|LINE|L2 70029 NR_001558 140828 Hs.9842 NR_001558 ENSG00000259974 LINC00261 ALIEN|C20orf56|DEANR1|HCCDR1|NCRNA00261|onco-lncRNA-17 long intergenic non-protein coding RNA 261 ncRNA 0.789 1.178 nan 2.429 1.749 0.847 0.261 0.077 0.081 1.771 0.819 1.343 0.925 0.037 0.071 0.451 0.217 0.122 0.174 2.404 2.199 7.259 2.819 0.089 0.121 0.134 0.241 2.912 2.808 0.344 0.102 0.246 0.299 2.622 2.328 0.405 0.898 2.809 1.489 0.013 0.186 0.667 0.018 0.261 1.343 0.012 2.480 0.148 0.054 936 chr16 11870579 11893979 + 0 NA intron (NM_014153, intron 1 of 22) intron (NM_014153, intron 1 of 22) 8835 NM_014153 29066 Hs.371856 NM_014153 ENSG00000122299 ZC3H7A HSPC055|ZC3H7|ZC3HDC7 zinc finger CCCH-type containing 7A protein-coding 2.161 1.457 nan 2.267 2.909 1.643 1.275 1.139 0.239 1.100 0.498 4.658 5.836 0.823 0.099 1.544 2.353 1.356 2.664 3.843 3.720 5.705 1.634 3.414 3.628 1.834 2.798 3.529 3.448 nan 4.835 1.194 2.429 3.042 4.348 1.887 2.838 3.547 1.354 1.611 1.481 1.055 2.115 1.275 4.658 1.576 3.195 1.030 1.376 1158 chr18 20511846 20516243 + 0 NA TTS (NR_039895) TTS (NR_039895) 205 NM_203292 5932 Hs.546282 NM_002894 ENSG00000101773 RBBP8 COM1|CTIP|JWDS|RIM|SAE2|SCKL2 RB binding protein 8, endonuclease protein-coding 4.664 3.308 4.135 7.399 4.044 1.965 8.041 2.313 0.132 1.770 1.461 5.190 9.826 2.612 0.114 5.106 5.550 3.692 nan 11.825 10.466 12.656 6.854 8.405 8.549 3.126 4.084 5.948 7.420 5.995 6.665 1.194 2.537 10.275 11.602 4.630 5.824 4.664 2.638 4.261 2.243 2.159 2.337 8.041 5.190 0.993 2.723 0.676 1.871 2126 chr6 41485318 41556863 + 0 NA intron (NM_001012426, intron 1 of 16) intron (NM_001012426, intron 1 of 16) -4731 NR_126415 101060264 Hs.571099 NR_126415 ENSG00000234753 FOXP4-AS1 - FOXP4 antisense RNA 1 ncRNA 1.424 1.094 1.882 1.783 1.050 0.542 0.913 0.332 0.098 0.355 0.200 1.677 1.499 0.297 0.107 1.040 1.779 0.525 0.746 1.372 1.453 1.914 0.748 0.717 0.749 0.481 0.783 4.706 nan 0.864 0.795 1.083 1.984 1.562 1.545 0.581 1.499 1.731 0.934 0.493 0.598 0.552 0.252 0.913 1.677 0.292 0.752 1.129 0.508 569 chr12 11857470 11887274 + 0 NA intron (NM_001987, intron 1 of 7) intron (NM_001987, intron 1 of 7) 69584 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 0.792 1.060 1.729 2.131 0.936 0.454 0.314 0.164 0.017 0.416 0.285 0.974 3.807 0.080 0.127 0.340 0.312 0.525 1.083 nan 0.975 1.614 0.697 0.626 0.738 0.385 0.682 4.865 5.344 0.460 0.246 0.839 1.549 0.089 0.110 0.263 0.467 0.809 0.608 2.433 1.471 0.032 0.032 0.314 0.974 0.036 0.075 1.249 0.112 387 chr10 133021984 133038350 + 0 NA intron (NM_174937, intron 4 of 11) intron (NM_174937, intron 4 of 11) 79817 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 0.523 0.646 0.630 0.102 3.779 1.803 0.187 0.037 0.019 0.172 0.186 1.405 0.324 0.007 0.067 0.210 0.091 0.054 0.086 0.484 0.571 1.596 0.658 0.048 0.067 0.065 0.118 0.471 0.526 0.139 0.105 0.174 0.243 0.732 0.622 0.090 0.087 1.259 0.721 0.292 0.163 0.228 0.010 0.187 1.405 0.218 0.013 0.054 0.053 2303 chr7 113721866 113731014 + 0 NA promoter-TSS (NR_033766) promoter-TSS (NR_033766) 75 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding nan 0.727 4.851 2.130 1.744 0.755 0.888 1.137 0.174 3.174 1.538 4.758 6.563 0.475 0.115 0.871 0.587 2.090 2.597 0.426 0.512 0.757 0.257 3.018 3.110 3.579 4.692 3.793 8.081 2.901 3.398 0.173 0.518 10.551 9.091 1.849 2.358 1.004 0.591 0.061 6.087 3.010 1.683 0.888 4.758 0.766 1.723 0.142 0.648 1504 chr2 178103049 178132933 + 0 NA intron (NM_001313902, intron 1 of 3) intron (NM_001313902, intron 1 of 3) 2747 NR_036075 100422824 NR_036075 ENSG00000265396 MIR3128 mir-3128 microRNA 3128 ncRNA 2.776 2.369 2.465 1.861 2.010 1.159 1.533 2.279 0.318 1.142 0.485 1.741 3.516 1.839 0.104 1.576 2.013 4.067 8.632 2.107 1.741 2.281 0.841 3.437 3.494 2.040 2.779 4.389 6.867 2.538 2.934 1.634 3.101 1.439 1.816 1.690 2.370 1.043 0.717 1.393 1.114 0.335 1.043 1.533 1.741 0.673 0.488 1.586 0.631 2298 chr7 105277002 105296962 + 0 NA intron (NM_020725, intron 4 of 11) AluSx1|SINE|Alu 32627 NM_138495 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding nan 1.765 2.684 0.544 0.520 0.217 1.558 0.273 0.146 0.667 0.409 1.756 1.700 0.179 0.144 3.763 4.660 0.436 0.843 1.656 1.521 3.910 0.774 0.528 0.508 1.254 1.665 1.468 2.369 1.063 0.884 1.717 2.992 1.166 2.826 1.348 nan 1.334 0.958 3.075 1.783 0.119 0.267 1.558 1.756 0.386 0.208 1.771 0.454 1550 chr2 233364180 233392028 + 0 NA Intergenic Intergenic -7069 NM_001195129 646960 Hs.570310 NM_001195129 ENSG00000237412 PRSS56 MCOP6 protease, serine 56 protein-coding 1.461 nan 1.256 0.141 0.543 0.264 1.194 0.024 0.035 0.134 0.112 0.112 0.705 0.117 0.090 0.392 0.348 0.269 0.342 0.641 0.450 0.426 0.122 0.687 0.699 0.107 0.277 0.443 nan 0.623 0.594 0.310 0.314 0.112 0.218 1.160 4.554 0.308 0.272 0.186 0.051 0.017 0.031 1.194 0.112 0.090 3.386 0.039 1.009 764 chr14 24834064 24849252 + 0 NA exon (NM_001136022, exon 4 of 10) exon (NM_001136022, exon 4 of 10) 3299 NM_001288802 4776 Hs.77810 NM_004554 ENSG00000100968 NFATC4 NF-AT3|NF-ATC4|NFAT3 nuclear factor of activated T-cells 4 protein-coding nan 2.435 2.199 2.515 3.506 1.837 3.053 2.664 0.382 0.674 0.496 2.515 4.281 0.871 0.111 0.590 1.203 1.363 1.861 4.943 4.656 1.353 0.518 2.564 2.823 0.798 1.168 5.774 nan 5.250 4.888 1.341 2.756 1.850 1.411 1.297 2.426 1.345 0.747 2.484 7.645 0.589 2.332 3.053 2.515 1.444 1.576 2.773 0.810 2214 chr7 1979751 1992671 + 0 NA intron (NM_001013836, intron 16 of 18) intron (NM_001013836, intron 16 of 18) -6025 NM_001304525 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 MAD1 mitotic arrest deficient like 1 protein-coding 1.358 1.041 1.365 1.187 0.339 0.139 0.734 0.296 0.038 0.220 0.207 0.555 nan 0.163 0.102 0.544 0.793 0.233 nan 1.229 1.204 nan 0.526 0.695 0.804 0.384 0.789 nan 3.744 0.399 0.393 0.360 0.358 0.353 0.438 0.457 0.629 0.889 0.593 1.161 0.355 0.088 0.198 0.734 0.555 0.098 2.528 0.077 0.162 268 chr1 203095708 203115262 + 0 NA intron (NM_001048230, intron 2 of 2) intron (NM_001048230, intron 2 of 2) 8649 NM_000674 134 Hs.77867 NM_000674 ENSG00000163485 ADORA1 RDC7 adenosine A1 receptor protein-coding 1.445 1.719 1.581 0.350 1.127 0.551 0.634 0.144 0.074 0.470 0.350 2.181 1.720 0.198 0.110 2.381 4.101 3.139 2.791 1.875 2.318 1.532 0.381 nan nan 0.691 1.093 0.468 0.645 0.390 0.192 0.697 0.843 0.344 0.246 0.584 1.304 1.065 0.681 0.175 0.397 0.039 0.155 0.634 2.181 0.090 0.062 0.485 0.209 2242 chr7 26191360 26197847 + 0 NA intron (NM_004289, intron 1 of 3) intron (NM_004289, intron 1 of 3) 2756 NM_004289 9603 Hs.404741 NM_004289 ENSG00000050344 NFE2L3 NRF3 nuclear factor, erythroid 2 like 3 protein-coding 3.231 1.683 5.168 1.021 0.860 0.391 1.003 0.393 0.150 0.649 0.506 0.522 3.435 1.071 0.105 4.683 4.548 8.247 10.603 1.372 1.141 4.714 1.257 2.815 2.900 0.889 1.662 2.303 3.368 1.381 2.201 3.422 4.407 0.858 0.522 2.505 nan 0.853 0.720 0.856 2.184 0.126 0.646 1.003 0.522 0.270 0.622 1.695 1.997 1117 chr17 74125404 74144429 + 0 NA intron (NM_001454, intron 2 of 2) intron (NM_001454, intron 2 of 2) -1721 NR_040017 100507218 Hs.654866 NR_040017 ENSG00000267128 RNF157-AS1 - RNF157 antisense RNA 1 ncRNA 1.684 1.650 1.722 1.775 1.973 1.029 0.725 0.146 0.164 1.142 0.533 1.468 3.444 0.127 0.110 1.226 2.045 0.749 1.244 1.220 1.433 5.145 1.287 0.909 0.911 nan 0.993 7.684 6.598 0.982 0.646 0.978 1.843 0.754 0.877 0.909 0.883 nan 0.677 1.715 0.717 0.161 1.506 0.725 1.468 0.328 0.260 1.157 0.231 938 chr16 14722421 14734526 + 0 NA intron (NM_001330500, intron 1 of 5) FLAM_C|SINE|Alu 1805 NM_016561 51283 Hs.435556 NM_016561 ENSG00000103429 BFAR BAR|RNF47 bifunctional apoptosis regulator protein-coding 3.258 2.122 nan 2.841 2.388 0.913 1.859 1.412 0.360 1.615 0.667 1.918 5.018 1.789 0.113 2.507 2.120 1.963 3.091 2.025 2.035 6.188 2.408 7.460 7.279 2.070 2.836 3.511 5.287 nan 2.153 1.533 2.296 2.147 2.881 3.628 4.832 1.937 0.957 1.004 2.051 0.362 1.003 1.859 1.918 1.108 0.972 0.751 2.539 1237 chr18 77000316 77023871 + 0 NA intron (NM_198531, intron 11 of 29) MIRb|SINE|MIR -143679 NM_172388 4772 Hs.534074 NM_006162 ENSG00000131196 NFATC1 NF-ATC|NF-ATc1.2|NFAT2|NFATc nuclear factor of activated T-cells 1 protein-coding nan nan 0.632 0.415 0.376 0.215 0.376 0.108 0.034 0.387 0.203 0.498 0.594 0.126 0.075 0.403 0.276 0.460 0.914 0.674 nan 10.800 4.757 0.840 0.882 0.192 0.336 0.707 nan 0.351 0.200 0.151 0.259 0.821 1.648 0.204 0.275 1.280 0.680 0.053 0.114 0.142 0.067 0.376 0.498 0.054 0.182 0.027 0.068 2535 chr9 123630370 123669382 + 0 NA intron (NM_001286840, intron 1 of 14) MLT2C1|LTR|ERVL 7298 NM_001286840 26147 Hs.460124 NM_015651 ENSG00000119403 PHF19 MTF2L1|PCL3|TDRD19B PHD finger protein 19 protein-coding nan nan 1.426 1.992 1.385 0.694 1.012 0.412 0.165 0.913 0.419 1.558 nan 0.682 0.094 0.718 0.876 0.895 1.167 3.744 3.358 1.043 0.497 1.448 1.505 0.731 nan 4.664 3.925 1.859 1.816 0.410 0.711 1.652 1.888 0.930 2.287 nan 0.845 3.675 1.666 0.525 0.346 1.012 1.558 0.316 1.011 0.267 0.809 877 chr15 65595902 65597562 + 0 NA Intergenic Intergenic -17551 NM_017851 54956 Hs.30634 NM_017851 ENSG00000138617 PARP16 ARTD15|C15orf30|pART15 poly(ADP-ribose) polymerase family member 16 protein-coding 4.099 4.752 nan 3.533 3.757 1.404 4.776 4.473 0.288 2.505 1.728 3.055 13.039 6.512 0.208 14.746 12.838 9.084 14.462 8.608 7.968 8.113 12.480 16.472 18.204 7.554 8.392 7.690 14.876 15.407 13.232 12.853 12.978 11.529 11.856 12.594 7.732 4.273 2.507 2.351 3.083 0.889 2.249 4.776 3.055 1.023 4.163 4.274 0.894 182 chr1 151811311 151814201 + 0 NA 5' UTR (NM_001136003, exon 1 of 2) 5' UTR (NM_001136003, exon 1 of 2) 277 NM_001136003 100191040 Hs.694717 NM_001136003 ENSG00000225556 C2CD4D FAM148D C2 calcium dependent domain containing 4D protein-coding nan nan 1.427 2.315 4.425 2.358 0.387 0.127 2.547 1.388 5.024 2.180 0.074 0.054 7.633 9.353 5.626 9.686 6.313 nan 7.868 3.093 2.191 2.681 0.311 0.436 8.139 10.633 0.209 0.244 17.430 21.848 4.928 4.310 0.430 0.784 3.302 1.568 4.877 3.625 0.751 0.137 0.387 5.024 0.544 2.110 10.616 0.128 1895 chr4 54871989 54885626 + 0 NA intron (NM_012110, intron 5 of 5) intron (NM_012110, intron 5 of 5) -25358 NR_027153 402176 Hs.452943 NM_001011538 RPL21P44 RPL21_17_477 ribosomal protein L21 pseudogene 44 pseudo nan 0.607 0.484 0.242 0.413 0.224 0.797 0.188 0.023 1.347 0.803 0.333 0.208 0.073 0.051 0.457 0.445 0.717 1.047 0.219 0.359 8.579 4.194 0.368 0.272 0.495 0.757 1.746 1.745 0.413 0.154 0.335 0.436 0.911 0.586 0.177 0.402 1.886 1.123 0.020 0.244 0.116 0.116 0.797 0.333 0.007 0.278 0.052 0.036 345 chr10 14878027 14882089 + 0 NA promoter-TSS (NM_001029954) promoter-TSS (NM_001029954) -75 NM_001029954 441549 Hs.559067 NM_001029954 ENSG00000185267 CDNF ARMETL1 cerebral dopamine neurotrophic factor protein-coding nan 3.617 6.207 4.329 3.235 1.815 2.237 4.019 0.514 1.963 0.480 4.770 5.296 2.113 0.196 5.535 6.175 6.732 10.165 6.840 5.799 15.400 7.302 5.892 6.714 4.786 6.118 5.370 9.243 4.803 5.731 2.128 4.194 4.564 5.154 6.648 5.740 3.159 1.770 0.819 1.745 0.699 2.255 2.237 4.770 0.667 2.272 1.164 1.644 2115 chr6 35498425 35516276 + 0 NA Intergenic ERVL-E-int|LTR|ERVL -26635 NM_003322 7287 Hs.485208 NM_003322 ENSG00000112041 TULP1 LCA15|RP14|TUBL1 tubby like protein 1 protein-coding nan 0.955 nan 0.183 0.203 0.143 0.231 0.139 0.186 0.061 0.112 0.160 0.312 0.091 0.144 0.452 0.469 0.245 nan nan 0.376 1.036 0.380 0.385 0.396 0.639 1.062 0.640 0.972 1.044 0.711 0.257 0.310 0.089 0.105 2.106 7.112 0.336 0.406 0.301 0.133 0.027 0.223 0.231 0.160 0.218 0.034 0.055 3.215 165 chr1 119582718 119596047 + 0 NA promoter-TSS (NR_126447) promoter-TSS (NR_126447) -646 NR_126447 104472716 Hs.689536 NR_126447 WARS2-IT1 - WARS2 intronic transcript 1 ncRNA nan 0.838 1.083 0.121 0.248 0.126 0.126 0.251 0.181 0.059 0.049 0.072 0.336 0.049 0.170 0.387 0.444 0.314 0.401 0.292 nan 0.179 0.113 0.545 0.609 3.748 4.374 0.297 0.303 0.329 0.128 0.692 0.673 0.057 0.081 0.436 1.058 0.717 0.502 0.047 0.093 0.012 0.139 0.126 0.072 0.036 0.046 0.329 0.326 1241 chr18 77700694 77736408 + 0 NA Intergenic Intergenic -6031 NM_001136180 440498 Hs.191582 NM_001136180 ENSG00000226742 HSBP1L1 - heat shock factor binding protein 1 like 1 protein-coding nan nan 1.210 0.192 0.844 0.360 0.866 0.210 0.077 0.353 0.255 0.905 1.590 0.599 0.089 2.543 3.126 2.219 2.369 1.527 nan 1.840 0.713 1.451 1.348 0.386 0.601 0.940 nan 0.571 0.591 1.191 2.304 0.598 0.577 0.744 1.329 0.796 0.495 0.554 0.710 0.121 0.413 0.866 0.905 0.093 0.265 2.025 0.481 1516 chr2 200294981 200328702 + 0 NA intron (NR_134967, intron 2 of 4) intron (NR_134967, intron 2 of 4) 10978 NR_134967 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 0.836 nan 0.904 4.319 1.720 0.946 1.295 0.413 0.100 0.767 0.617 1.090 5.354 0.503 0.085 0.626 0.579 1.108 1.062 3.744 3.100 0.337 0.136 1.054 1.055 1.233 1.713 1.625 2.233 0.585 0.484 0.535 0.874 1.789 2.391 0.738 1.128 1.041 0.575 0.033 2.853 0.488 1.103 1.295 1.090 0.130 1.263 0.264 0.247 1130 chr17 77990580 78022993 + 0 NA intron (NM_019020, intron 1 of 11) intron (NM_019020, intron 1 of 11) 2871 NM_019020 125058 Hs.369819 NM_019020 ENSG00000167291 TBC1D16 - TBC1 domain family member 16 protein-coding 2.434 2.222 3.779 3.320 1.929 1.055 1.041 0.912 0.354 1.470 0.688 2.186 6.567 0.569 0.138 2.071 2.474 0.599 0.841 2.902 2.352 3.480 1.652 1.111 1.141 nan 1.800 5.260 6.272 3.442 2.950 0.722 1.026 1.297 1.026 1.903 2.991 nan 1.263 1.489 1.351 0.114 0.309 1.041 2.186 0.430 1.773 0.214 0.636 1870 chr3 187454104 187469788 + 0 NA intron (NM_001706, intron 1 of 9) intron (NM_001706, intron 1 of 9) 1567 NM_001706 604 Hs.478588 NM_001706 ENSG00000113916 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 B-cell CLL/lymphoma 6 protein-coding 2.166 4.320 2.113 2.567 3.284 1.319 1.164 3.988 0.310 0.642 0.432 1.933 11.329 2.363 0.126 0.626 0.589 3.484 7.171 6.066 4.846 0.622 0.328 3.765 4.117 2.325 3.235 5.269 8.431 2.780 2.306 0.919 1.367 0.330 0.441 0.288 0.435 1.891 1.189 5.123 1.147 0.043 0.804 1.164 1.933 0.201 1.329 0.163 0.150 1039 chr17 27438265 27458931 + 0 NA exon (NM_078471, exon 5 of 42) exon (NM_078471, exon 5 of 42) 18799 NM_001346768 399687 Hs.462590 NM_078471 ENSG00000196535 MYO18A MAJN|MYSPDZ|SP-R210|SPR210 myosin XVIIIA protein-coding nan nan nan 0.080 0.496 0.326 0.287 0.204 0.078 0.087 0.070 0.139 0.414 0.126 0.140 0.690 0.848 0.365 0.551 0.688 0.656 0.947 0.332 0.435 0.471 0.385 0.756 0.508 0.714 5.622 5.190 0.806 0.891 0.258 0.344 0.532 nan 0.718 0.333 0.513 0.181 0.072 0.170 0.287 0.139 0.551 0.069 0.287 0.655 491 chr11 75036776 75064424 + 0 NA intron (NM_020251, intron 1 of 14) intron (NM_020251, intron 1 of 14) -4370 NR_029891 442900 NR_029891 ENSG00000199090 MIR326 MIRN326|hsa-mir-326|mir-326 microRNA 326 ncRNA nan 2.053 1.412 0.603 0.439 0.313 0.576 0.131 0.058 0.249 0.161 0.696 1.731 0.421 0.109 2.536 3.737 0.543 0.914 1.009 1.024 2.045 0.561 2.240 2.507 1.399 2.337 2.884 2.967 1.321 1.131 3.241 6.176 0.437 0.561 0.792 2.124 0.638 0.503 2.352 1.116 0.145 0.135 0.576 0.696 0.539 1.195 6.277 0.633 2023 chr5 142429394 142447959 + 0 NA intron (NM_015071, intron 17 of 22) intron (NM_015071, intron 17 of 22) -133389 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA nan 0.964 0.743 0.342 0.892 0.415 0.299 1.253 0.208 0.153 0.159 0.667 3.115 0.058 0.110 0.228 0.211 0.327 0.830 0.452 0.553 0.342 0.162 0.454 0.429 1.213 1.570 2.931 1.891 0.511 0.409 0.280 0.588 0.568 0.432 0.248 0.980 1.015 0.696 0.277 3.046 0.123 0.166 0.299 0.667 0.287 0.552 0.522 0.238 2491 chr9 15550180 15555170 + 0 NA promoter-TSS (NM_001348002) promoter-TSS (NM_001348002) -330 NM_001348002 203238 Hs.17267 NM_173550 ENSG00000164989 CCDC171 C9orf93|bA536D16.1|bA778P13.1 coiled-coil domain containing 171 protein-coding nan nan 2.440 3.406 5.093 2.637 3.656 1.075 0.313 1.621 1.463 3.673 9.787 2.283 0.113 0.776 1.473 1.963 2.668 8.230 5.901 7.112 2.359 3.275 3.011 2.389 3.225 4.064 6.154 3.497 3.815 2.327 2.977 7.854 5.907 1.875 2.798 7.341 3.782 3.469 2.820 1.465 2.697 3.656 3.673 0.894 2.079 2.355 1.194 1590 chr20 21583255 21604345 + 0 NA intron (NR_109880, intron 2 of 3) L1ME3C|LINE|L1 43138 NR_109880 101929625 Hs.542413 NR_109880 LINC01727 - long intergenic non-protein coding RNA 1727 ncRNA 0.825 1.102 nan 0.557 1.327 0.692 0.121 0.100 0.085 0.663 0.468 1.368 1.934 0.026 0.064 0.546 0.537 0.177 0.242 1.917 1.957 3.613 0.923 0.199 0.214 0.203 0.405 0.374 0.704 0.504 0.233 0.216 0.309 0.751 0.653 0.188 0.230 3.274 1.495 0.037 0.046 0.131 0.004 0.121 1.368 0.176 1.489 0.047 0.041 2102 chr6 31586801 31590731 + 0 NA intron (NM_080686, intron 1 of 30).4 CpG 316 NM_004638 7916 Hs.123239 NM_004638 ENSG00000204469 PRRC2A BAT2|D6S51|D6S51E|G2 proline rich coiled-coil 2A protein-coding nan 3.921 5.476 8.004 7.176 4.352 8.074 4.074 0.288 3.089 1.302 10.071 14.426 8.013 0.238 9.346 9.150 11.870 15.218 nan 10.680 10.215 5.469 22.973 24.206 5.807 7.533 12.339 17.558 9.724 9.389 5.724 8.411 8.709 9.866 8.589 9.846 5.506 2.091 5.813 3.816 1.355 3.430 8.074 10.071 2.445 3.123 5.080 2.800 2521 chr9 86588874 86611180 + 0 NA intron (NM_024945, intron 1 of 2) intron (NM_024945, intron 1 of 2) -4330 NM_031262 3190 Hs.522257 NM_002140 ENSG00000165119 HNRNPK AUKS|CSBP|HNRPK|TUNP heterogeneous nuclear ribonucleoprotein K protein-coding 2.677 2.004 2.638 3.219 6.949 3.917 1.853 1.359 0.195 1.685 0.872 4.034 3.011 1.162 0.092 2.235 1.828 3.388 4.218 4.902 5.083 2.483 1.479 4.028 4.279 1.562 1.975 4.185 6.364 2.188 2.321 1.657 2.926 3.777 4.776 3.370 2.506 2.032 1.132 0.990 1.127 0.763 0.996 1.853 4.034 0.660 0.833 0.578 0.704 1745 chr22 47422923 47449107 + 0 NA intron (NR_104292, intron 12 of 13) AluY|SINE|Alu -124077 NR_122047 642757 Hs.632786 NR_122047 TBC1D22A-AS1 - TBC1D22A antisense RNA 1 ncRNA 0.819 0.637 nan 0.188 1.420 0.755 0.917 0.083 0.067 0.360 0.230 4.439 0.725 0.045 0.086 0.440 0.790 0.273 0.455 4.280 4.270 0.759 0.188 0.831 0.714 0.549 0.964 1.133 1.669 1.105 1.209 0.454 0.650 0.272 0.294 0.187 0.298 0.955 0.779 1.788 0.932 0.071 0.092 0.917 4.439 0.317 0.241 0.285 0.082 1344 chr19 47512980 47541761 + 0 NA intron (NM_002517, intron 3 of 11) AluSx3|SINE|Alu 4269 NM_002517 4861 Hs.79564 NM_002517 ENSG00000130751 NPAS1 MOP5|PASD5|bHLHe11 neuronal PAS domain protein 1 protein-coding 1.091 0.911 1.035 0.353 0.474 0.246 0.329 0.143 0.141 0.099 0.143 0.324 0.753 0.408 0.126 0.335 0.388 0.409 0.669 0.720 0.757 1.271 0.302 0.742 0.800 0.439 0.773 0.677 1.036 0.613 0.335 0.363 0.345 0.247 0.325 1.312 3.890 0.910 0.677 0.128 0.536 0.043 0.110 0.329 0.324 0.081 0.217 0.079 1.133 1614 chr20 42832455 42850663 + 0 NA intron (NR_038337, intron 1 of 2) intron (NR_038337, intron 1 of 2) 1833 NR_038337 100505783 Hs.159049 NR_038337 ENSG00000223891 OSER1-AS1 - OSER1 antisense RNA 1 (head to head) ncRNA nan nan 1.586 1.815 1.041 0.467 0.963 1.685 0.191 0.577 0.232 0.835 2.089 0.793 0.141 2.091 2.087 2.058 3.755 1.730 1.626 nan 1.962 2.458 2.670 1.453 1.843 2.126 3.763 nan 1.936 1.024 1.971 0.327 0.715 1.648 1.925 0.657 0.479 0.186 0.703 0.031 0.954 0.963 0.835 0.359 0.307 0.477 0.448 443 chr11 47125073 47160584 + 0 NA intron (NM_001003678, intron 3 of 8) Tigger15a|DNA|TcMar-Tigger 55848 NM_032389 84364 Hs.436204 NM_032389 ENSG00000149182 ARFGAP2 IRZ|NBLA10535|ZFP289|ZNF289 ADP ribosylation factor GTPase activating protein 2 protein-coding nan 1.925 1.054 1.281 1.744 0.963 0.524 0.139 0.104 0.195 0.224 1.254 0.947 0.073 0.125 0.666 0.744 0.690 0.687 1.036 1.057 4.060 1.179 0.373 0.416 0.614 0.901 1.272 1.560 0.298 0.190 1.044 1.595 1.069 1.119 0.371 nan 1.682 0.960 1.122 2.715 0.507 0.101 0.524 1.254 0.036 0.371 2.000 0.269 2056 chr6 5199314 5219987 + 0 NA intron (NM_001164840, intron 2 of 2) intron (NM_001164840, intron 2 of 2) 51533 NM_001318782 57128 Hs.387755 NM_020408 ENSG00000214113 LYRM4 C6orf149|CGI-203|COXPD19|ISD11 LYR motif containing 4 protein-coding 1.446 0.969 1.205 0.719 0.337 0.224 0.262 0.646 0.122 0.282 0.206 0.516 0.518 0.079 0.101 0.462 0.545 1.687 1.045 0.597 0.530 0.758 0.241 0.394 0.411 0.825 1.219 0.831 0.882 1.347 1.234 0.325 0.602 0.183 0.265 1.940 4.968 0.744 0.634 0.059 0.265 0.018 0.092 0.262 0.516 0.128 0.055 0.153 1.273 678 chr12 122580622 122611297 + 0 NA intron (NM_014938, intron 1 of 16) intron (NM_014938, intron 1 of 16) -56307 NM_152759 254050 Hs.374856 NM_152759 ENSG00000158113 LRRC43 - leucine rich repeat containing 43 protein-coding 1.340 2.047 1.227 1.277 2.699 1.415 0.479 0.150 0.162 0.889 0.562 1.520 2.339 0.149 0.151 1.996 2.345 0.450 0.838 1.630 1.730 nan 0.819 0.916 0.992 1.158 1.465 3.105 4.076 0.719 0.618 3.994 4.523 1.695 2.228 0.295 0.562 2.588 1.275 2.317 2.551 0.428 0.350 0.479 1.520 0.300 0.312 5.151 0.206 1939 chr5 1864919 1887653 + 0 NA Intergenic CpG 6594 NM_016358 50805 Hs.196927 NM_016358 ENSG00000113430 IRX4 IRXA3 iroquois homeobox 4 protein-coding 0.293 0.437 0.610 0.168 0.334 0.154 0.950 0.118 0.098 0.096 0.105 0.321 0.589 0.043 0.076 0.237 0.136 1.428 nan 2.890 1.926 0.387 0.099 0.051 0.046 0.144 0.254 nan 0.113 nan 0.390 0.104 0.115 0.088 0.116 0.052 0.068 0.453 nan 4.134 0.321 0.021 0.042 0.950 0.321 0.381 0.094 0.013 0.016 1042 chr17 27907473 27931760 + 0 NA promoter-TSS (NM_152345) promoter-TSS (NM_152345) -911 NM_152345 124930 Hs.662164 NM_152345 ENSG00000198720 ANKRD13B - ankyrin repeat domain 13B protein-coding nan nan nan 0.502 2.856 1.437 2.249 0.571 0.124 0.467 0.306 1.488 3.812 2.650 0.153 2.863 3.983 1.340 2.098 2.190 1.899 2.812 0.876 2.231 2.224 1.828 2.670 2.933 4.045 3.912 4.504 1.775 3.688 1.699 1.276 2.119 nan 1.199 0.760 2.151 1.031 0.472 0.707 2.249 1.488 1.606 1.092 1.777 1.855 1992 chr5 71534246 71549996 + 0 NA intron (NM_001286748, intron 4 of 11) intron (NM_001286748, intron 4 of 11) 66666 NM_001324255 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 1.270 nan 1.569 0.164 0.408 0.224 0.724 2.989 0.276 0.409 0.277 0.152 0.419 0.152 0.100 0.402 0.655 0.633 0.702 0.504 0.548 nan 0.458 0.232 0.206 3.227 nan 0.364 0.336 0.892 0.536 0.237 0.331 0.520 0.644 0.695 2.420 0.755 0.507 0.563 0.209 0.108 0.050 0.724 0.152 0.284 0.341 0.100 0.478 1917 chr4 111536778 111545268 + 0 NA intron (NM_153427, intron 4 of 4) intron (NM_153427, intron 4 of 4) 3231 NM_000325 5308 Hs.643588 NM_000325 ENSG00000164093 PITX2 ARP1|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS paired like homeodomain 2 protein-coding 0.457 0.693 0.426 0.078 0.114 0.056 0.106 0.991 0.056 0.054 0.058 0.057 2.262 0.319 0.091 1.050 1.802 9.414 10.341 0.104 0.156 0.046 0.061 0.138 0.170 0.146 0.206 1.566 2.021 0.296 0.190 0.290 0.993 1.526 0.854 0.306 0.638 0.257 0.168 0.356 0.302 0.101 0.106 0.057 0.024 1.147 0.269 0.161 1947 chr5 4242407 4246965 + 0 NA Intergenic Intergenic -528908 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 0.334 0.793 0.817 0.173 0.293 0.107 0.086 0.099 0.320 0.138 0.122 0.117 0.320 0.040 0.124 8.054 8.898 14.434 nan 0.327 0.534 0.074 0.079 0.078 0.083 0.161 0.369 nan 0.349 nan 0.338 3.306 5.753 0.051 0.071 0.121 0.252 0.152 nan 0.098 0.041 0.035 0.086 0.117 0.021 0.021 1.676 0.028 2277 chr7 73683412 73705436 + 0 NA Intergenic AluJb|SINE|Alu -9381 NM_032421 7461 Hs.647018 NM_003388 ENSG00000106665 CLIP2 CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4 CAP-Gly domain containing linker protein 2 protein-coding nan 0.606 0.759 0.261 0.768 0.379 0.558 2.843 1.163 0.277 0.245 0.506 1.285 0.590 0.155 1.095 1.889 1.883 nan 1.204 1.083 0.801 0.326 0.215 0.209 0.387 nan 1.333 nan 0.755 0.567 0.814 1.152 0.234 0.280 0.182 0.263 1.240 0.937 0.306 0.729 0.047 0.346 0.558 0.506 0.220 0.316 0.589 0.073 2312 chr7 115337269 115374997 + 0 NA Intergenic Intergenic 252234 NM_001244583 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding nan 0.720 0.885 0.484 0.529 0.242 0.906 0.197 0.123 0.433 0.441 0.638 0.947 0.095 0.171 0.436 0.316 0.517 0.622 0.301 0.413 0.186 0.113 0.301 0.265 0.641 0.754 0.907 1.469 0.453 0.213 0.263 0.556 6.987 9.532 0.514 1.250 1.033 0.598 0.050 0.532 2.815 0.238 0.906 0.638 0.057 0.430 0.168 0.140 1131 chr17 78092633 78104993 + 0 NA Intergenic Intergenic 22169 NM_014740 9775 Hs.389649 NM_014740 ENSG00000141543 EIF4A3 DDX48|MUK34|NMP265|NUK34|RCPS|eIF4AIII eukaryotic translation initiation factor 4A3 protein-coding 1.239 0.945 0.992 0.332 0.470 0.158 0.244 0.205 0.143 0.203 0.080 0.205 0.532 0.052 0.091 4.700 6.307 0.277 0.334 0.580 0.570 0.966 0.284 1.037 1.141 nan 0.411 0.608 0.798 0.809 0.580 0.372 0.562 0.165 0.160 0.781 1.940 nan 0.611 0.050 0.174 0.078 0.144 0.244 0.205 0.128 1.397 0.145 0.348 176 chr1 150945145 150961617 + 0 NA Intergenic (TTTA)n|Simple_repeat|Simple_repeat -1118 NM_003568 8416 Hs.3346 NM_003568 ENSG00000143412 ANXA9 ANX31 annexin A9 protein-coding nan nan 2.106 1.106 1.239 0.704 1.534 1.188 0.352 1.113 0.678 2.378 4.190 1.548 0.158 2.260 2.784 1.955 3.199 3.551 nan 3.347 1.196 3.211 3.114 1.392 1.978 4.012 4.633 1.228 1.368 2.500 3.972 1.353 1.260 2.192 1.996 1.800 0.907 1.677 3.827 0.273 1.258 1.534 2.378 0.419 2.538 1.341 0.698 1826 chr3 157818973 157830202 + 0 NA promoter-TSS (NM_001163678) promoter-TSS (NM_001163678) -635 NM_006884 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding nan 2.760 4.100 2.109 1.383 0.770 1.589 3.790 0.344 1.438 0.809 2.133 2.418 0.713 0.061 1.132 1.383 0.438 0.497 3.929 3.134 4.449 2.036 2.578 2.671 4.987 nan 2.499 3.527 4.701 4.180 0.661 1.380 2.118 2.379 2.135 3.191 1.524 1.118 0.951 1.318 0.412 0.892 1.589 2.133 0.654 1.230 0.664 0.878 719 chr13 72175844 72199581 + 0 NA intron (NM_080759, intron 4 of 11) L2b|LINE|L2 253618 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding nan 1.230 0.863 0.171 2.508 1.047 1.924 0.057 0.068 0.487 0.271 0.704 0.613 0.018 0.064 0.712 0.645 0.203 0.391 1.591 1.819 nan 1.213 0.144 0.155 1.116 1.082 0.414 0.453 nan 2.155 0.271 0.501 1.280 2.433 0.890 nan 0.252 0.187 0.108 0.438 0.393 1.708 1.924 0.704 0.390 0.051 0.144 0.444 17 chr1 6496411 6559940 + 0 NA exon (NM_001265592, exon 21 of 22) exon (NM_001265592, exon 21 of 22) -1920 NM_003790 8718 Hs.462529 NM_003790 ENSG00000215788 TNFRSF25 APO-3|DDR3|DR3|LARD|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR TNF receptor superfamily member 25 protein-coding 1.335 nan 1.426 2.117 1.272 0.729 0.360 0.123 0.121 0.390 0.298 1.270 1.324 0.370 0.105 2.797 4.527 1.299 1.466 3.235 2.935 1.362 0.446 8.005 8.159 0.351 nan nan 3.878 nan 0.551 2.897 4.186 0.480 0.371 0.389 0.676 0.945 0.528 2.207 1.732 0.083 0.285 0.360 1.270 0.446 0.278 2.683 0.066 632 chr12 58276417 58299842 + 0 NA Intergenic Intergenic 41818 NR_038269 100506844 Hs.90286 NR_038269 LOC100506844 - uncharacterized LOC100506844 ncRNA nan 2.247 1.200 1.774 2.377 1.136 0.743 1.927 0.318 3.623 1.644 4.644 2.453 0.426 0.099 nan 2.199 0.934 2.307 4.580 nan 3.595 1.548 0.660 0.700 1.436 nan 5.624 nan 2.111 1.860 0.787 1.504 1.663 1.441 0.557 1.143 6.354 2.855 0.928 4.053 0.265 0.393 0.743 4.644 0.708 1.257 0.911 0.327 2015 chr5 133838598 133881385 + 0 NA promoter-TSS (NM_001308143) promoter-TSS (NM_001308143) -75 NM_001308143 23338 Hs.732155 NM_015288 ENSG00000043143 JADE2 JADE-2|PHF15 jade family PHD finger 2 protein-coding 1.620 1.211 nan 0.571 1.355 0.686 0.350 1.035 0.208 0.252 0.151 0.543 3.275 1.809 0.133 0.447 0.820 0.972 1.494 1.086 1.009 1.575 0.405 0.672 0.764 0.807 1.210 4.389 4.068 1.991 2.124 0.878 1.197 0.752 0.678 1.139 3.243 0.936 0.547 0.810 2.141 0.132 0.222 0.350 0.543 0.261 0.897 0.756 1.287 1295 chr19 36247646 36250858 + 0 NA intron (NM_001039887, intron 1 of 11) CpG 208 NM_001039887 148137 Hs.527982 NM_144692 ENSG00000167595 PROSER3 C19orf55 proline and serine rich 3 protein-coding 7.857 3.345 3.931 10.998 4.906 2.717 4.386 2.260 0.389 1.673 1.231 4.655 23.091 4.993 0.218 3.618 3.646 4.449 6.411 7.626 6.907 8.632 3.188 8.735 9.516 6.059 7.277 6.761 8.003 nan 8.126 4.255 6.377 4.855 5.068 5.000 7.981 3.968 2.371 3.938 5.422 1.278 2.287 4.386 4.655 1.511 3.616 3.072 3.329 1083 chr17 44655266 44669798 + 0 NA Intergenic AluSz|SINE|Alu -5444 NM_016632 51326 Hs.559259 NM_016632 ENSG00000185829 ARL17A ARF1P2|ARL17P1 ADP ribosylation factor like GTPase 17A protein-coding 3.544 3.000 nan 1.712 4.679 2.423 1.189 0.519 0.265 1.866 1.010 3.588 4.346 1.072 0.115 1.951 1.765 3.031 3.672 1.753 nan 3.289 0.967 14.356 14.590 2.016 2.741 2.650 nan 4.120 3.866 1.835 3.015 4.634 6.306 3.751 4.895 3.503 1.840 0.992 3.363 1.482 0.885 1.189 3.588 0.582 2.532 1.225 1.318 1788 chr3 114361925 114370900 + 0 NA intron (NR_121662, intron 3 of 6) MIRb|SINE|MIR -22620 NM_001164346 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 1.020 nan 0.684 0.146 0.491 0.197 0.212 1.659 0.214 0.105 0.193 0.118 0.157 0.119 0.116 0.443 0.223 6.590 4.544 0.346 nan 0.470 0.274 0.305 0.270 nan 1.454 0.265 0.235 0.707 0.254 0.071 0.243 0.070 0.091 0.262 0.273 0.478 0.476 0.167 0.060 0.011 0.107 0.212 0.118 0.022 0.009 0.055 0.082 2347 chr8 33453458 33458824 + 0 NA promoter-TSS (NM_001305116) promoter-TSS (NM_001305116) -826 NM_001305116 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 1.846 3.076 nan 2.951 2.119 0.721 5.555 0.097 0.061 2.983 1.405 3.991 5.364 0.042 0.132 1.035 2.123 1.537 1.837 13.777 12.677 8.229 2.976 0.300 0.451 1.644 2.103 3.580 4.049 6.977 10.248 1.522 2.157 4.809 2.410 0.842 1.711 7.754 4.741 4.274 4.142 0.745 1.064 5.555 3.991 2.043 1.693 1.144 0.563 293 chr1 217249346 217264337 + 0 NA intron (NM_001134285, intron 1 of 8) MIR3|SINE|MIR 6146 NM_206594 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR3|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 0.879 2.156 1.555 2.893 0.931 0.449 0.571 0.352 0.195 1.705 0.880 0.824 nan 0.050 0.083 0.965 1.820 0.728 0.999 1.690 1.864 nan 1.122 0.555 0.559 0.605 nan 2.958 2.384 0.685 0.584 1.151 2.405 2.271 1.656 0.238 0.346 2.756 1.471 0.019 0.160 0.517 0.122 0.571 0.824 0.052 2.643 2.085 0.082 271 chr1 203442378 203451477 + 0 NA intron (NM_002725, intron 1 of 2) intron (NM_002725, intron 1 of 2) 2044 NM_201348 5549 Hs.632481 NM_002725 ENSG00000188783 PRELP MST161|MSTP161|SLRR2A proline and arginine rich end leucine rich repeat protein protein-coding 2.012 1.283 3.987 0.242 0.663 0.390 1.195 0.157 0.230 0.433 0.283 1.001 0.963 0.118 0.187 0.732 1.121 0.450 0.881 1.294 1.388 1.921 0.658 nan nan 5.135 5.787 1.218 1.379 0.523 0.309 0.322 0.488 1.855 1.087 0.510 1.596 1.450 0.876 0.028 0.528 0.845 0.141 1.195 1.001 0.457 0.034 0.088 0.235 650 chr12 104304664 104311738 + 0 NA intron (NR_027249, intron 2 of 15) MIRb|SINE|MIR 15788 NR_027249 253724 Hs.506549 NR_027249 ENSG00000214198 TTC41P GNN|GNNP tetratricopeptide repeat domain 41, pseudogene pseudo 0.940 0.801 nan 0.549 0.529 0.431 1.207 0.174 0.228 0.467 0.312 3.932 0.273 0.154 0.156 2.115 1.735 0.256 0.398 2.094 2.554 10.368 3.843 0.970 1.215 0.528 0.799 0.599 0.449 1.902 2.047 0.191 0.330 1.136 0.455 0.250 0.505 1.955 1.217 0.042 0.225 0.204 0.755 1.207 3.932 0.398 0.270 0.069 0.105 1231 chr18 74228387 74246700 + 0 NA Intergenic Intergenic -3069 NR_015417 284276 Hs.390287 NR_015417 ENSG00000263812 LINC00908 - long intergenic non-protein coding RNA 908 ncRNA nan nan 0.657 1.017 3.343 1.807 2.325 0.054 0.087 1.097 0.600 7.766 1.160 0.036 0.081 0.614 0.774 0.279 0.389 6.947 nan 5.913 3.366 0.538 0.582 0.078 0.135 4.369 nan 1.664 1.644 0.521 0.660 1.428 0.813 0.759 1.135 4.203 2.456 0.043 0.252 0.049 0.796 2.325 7.766 0.063 0.556 0.367 0.282 1944 chr5 3738427 3743693 + 0 NA Intergenic Intergenic 144892 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 0.442 0.734 0.719 0.167 0.171 0.062 0.442 0.125 0.123 0.097 0.172 0.159 0.390 0.020 0.043 0.648 0.523 8.818 7.265 0.538 0.541 0.062 0.067 0.074 0.091 0.204 0.281 nan 0.146 nan 0.392 0.295 0.305 0.008 0.066 0.093 0.070 0.326 nan 0.011 0.114 0.044 0.442 0.159 0.013 0.094 0.093 2306 chr7 114283499 114304076 + 0 NA TTS (NR_037439) TTS (NR_037439) 387 NR_037439 100500896 NR_037439 ENSG00000272230 MIR3666 - microRNA 3666 ncRNA nan 0.729 1.096 0.427 0.948 0.627 0.298 0.212 0.079 0.838 0.619 3.168 2.522 0.100 0.147 0.504 0.312 0.479 0.368 1.724 1.741 5.234 3.204 0.264 0.237 2.023 2.216 1.279 2.022 0.711 0.366 0.185 0.302 1.180 2.339 0.594 1.103 0.921 0.698 3.643 5.532 0.362 0.147 0.298 3.168 0.260 0.265 0.058 0.234 901 chr15 91190779 91210651 + 0 NA intron (NR_120372, intron 2 of 3) L1M5|LINE|L1 -2750 NR_120371 101929765 Hs.615348 NR_120371 ENSG00000245479 LINC01585 - long intergenic non-protein coding RNA 1585 ncRNA nan nan nan 0.300 0.956 0.531 0.533 0.493 0.106 0.205 0.180 0.956 0.980 0.420 0.066 2.359 3.168 0.821 1.442 0.667 0.704 nan 0.408 1.335 1.433 0.313 0.455 1.456 2.001 nan 0.534 5.253 5.734 0.307 0.210 0.252 nan 0.934 0.581 0.134 2.652 0.019 0.235 0.533 0.956 0.170 0.536 8.024 0.069 2234 chr7 15714413 15732830 + 0 NA intron (NM_005924, intron 1 of 2) intron (NM_005924, intron 1 of 2) 2687 NM_005924 4223 Hs.170355 NM_005924 ENSG00000106511 MEOX2 GAX|MOX2 mesenchyme homeobox 2 protein-coding nan 0.996 nan 0.235 0.255 0.122 3.766 0.214 0.088 1.229 0.734 0.176 0.393 0.082 0.182 nan 0.229 0.140 0.203 0.468 0.519 0.229 0.147 0.626 0.659 0.535 0.732 0.444 0.491 8.172 9.317 0.085 0.131 0.104 0.101 0.141 0.413 3.843 2.159 0.033 0.039 0.021 0.061 3.766 0.176 0.027 0.076 0.043 0.047 495 chr11 77849396 77862141 + 0 NA intron (NR_102280, intron 2 of 3) AluSq4|SINE|Alu 4929 NR_102280 100289388 Hs.628183 NM_203432 ENSG00000246174 KCTD21-AS1 - KCTD21 antisense RNA 1 ncRNA nan 1.606 1.120 1.108 1.230 0.617 1.042 0.532 0.126 0.672 0.480 2.633 2.850 1.368 0.136 1.701 1.569 1.335 2.003 3.491 4.217 6.040 1.771 4.436 4.669 2.051 2.638 2.412 2.911 1.414 1.097 0.853 1.320 1.751 1.872 0.948 1.269 1.872 1.069 0.968 1.467 0.285 1.072 1.042 2.633 0.372 0.709 0.248 0.363 851 chr15 31548453 31575133 + 0 NA Intergenic Intergenic -38739 NM_001243538 283710 Hs.591097 NM_001243538 LOC283710 - uncharacterized LOC283710 protein-coding 1.200 nan nan 0.805 0.906 0.505 0.471 0.134 0.102 1.452 0.752 1.860 3.118 0.036 0.070 1.885 2.758 0.525 1.000 3.140 4.021 1.249 0.378 0.240 0.258 0.392 0.603 1.473 1.549 5.184 5.456 0.799 0.951 2.337 1.997 0.824 1.903 0.551 0.379 1.340 0.648 1.047 0.679 0.471 1.860 0.963 1.303 0.549 0.845 1401 chr2 8815496 8834221 + 0 NA TTS (NM_002166) TTS (NM_002166) 2745 NM_002166 3398 Hs.180919 NM_002166 ENSG00000115738 ID2 GIG8|ID2A|ID2H|bHLHb26 inhibitor of DNA binding 2, HLH protein protein-coding 2.517 1.848 2.855 5.861 4.950 2.594 3.914 2.345 0.122 3.456 1.570 8.722 16.146 6.108 0.167 3.193 3.195 9.680 12.404 10.667 9.349 7.578 3.521 5.678 5.292 3.568 4.269 4.669 5.515 3.247 3.858 2.505 5.213 2.379 2.356 2.438 2.553 2.671 1.476 4.369 6.655 0.595 4.049 3.914 8.722 1.935 3.334 2.733 0.509 879 chr15 66245073 66264933 + 0 NA intron (NM_032445, intron 9 of 22) intron (NM_032445, intron 9 of 22) -77568 NR_036196 100422905 NR_036196 ENSG00000263512 MIR4311 - microRNA 4311 ncRNA 0.990 1.621 nan 1.099 1.969 1.003 0.986 0.109 0.081 0.581 0.328 1.236 1.768 0.082 0.066 1.328 2.323 0.855 1.972 1.573 1.476 nan 0.668 0.379 0.472 0.359 0.626 5.548 4.079 0.834 0.688 1.137 1.425 0.818 1.079 0.565 1.799 1.010 0.665 0.744 1.308 0.111 0.479 0.986 1.236 0.451 1.557 0.438 0.268 1952 chr5 15886467 15894649 + 0 NA intron (NM_001278317, intron 2 of 3) AluSp|SINE|Alu -44733 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA nan nan 12.466 4.838 0.107 0.137 0.122 0.279 0.188 0.694 0.426 0.073 nan 0.079 0.101 0.545 0.479 0.210 0.296 0.441 0.571 7.084 1.733 0.055 0.082 nan 0.604 0.747 1.400 5.443 4.172 0.093 0.178 4.243 4.737 0.202 nan 1.279 0.953 0.018 0.055 0.736 2.258 0.122 0.073 0.023 0.123 0.012 0.362 2573 chr9 139218582 139224365 + 0 NA promoter-TSS (NM_001145638) promoter-TSS (NM_001145638) 306 NR_026964 26102 Hs.561893 NR_026964 ENSG00000262075 DKFZP434A062 - uncharacterized LOC26102 ncRNA nan 1.890 6.866 0.770 1.511 0.661 2.369 0.724 0.149 0.682 0.352 2.087 3.660 2.116 0.069 1.188 2.023 1.785 2.947 5.791 4.970 nan 0.828 1.060 1.298 2.284 3.233 1.552 2.807 8.935 11.100 1.210 2.202 1.890 1.473 2.527 2.833 1.671 1.160 1.784 1.305 0.442 0.440 2.369 2.087 2.937 0.643 0.735 0.814 979 chr16 67412117 67438951 + 0 NA intron (NM_015964, intron 1 of 3) intron (NM_015964, intron 1 of 3) 1904 NM_016140 51673 Hs.534458 NM_015964 ENSG00000159713 TPPP3 CGI-38|TPPP/p20|p20|p25gamma tubulin polymerization promoting protein family member 3 protein-coding nan nan 2.378 1.323 1.782 0.825 1.571 0.112 0.042 0.901 0.364 3.025 1.707 0.109 0.067 1.119 1.619 0.271 0.526 2.484 2.627 2.298 1.180 1.864 1.970 0.693 nan 1.724 3.374 1.551 1.672 0.518 0.973 1.326 0.942 1.154 1.663 2.183 1.259 1.470 3.513 0.267 1.035 1.571 3.025 0.680 0.440 0.550 0.290 1312 chr19 39920884 39939399 + 0 NA Intergenic Intergenic -3481 NM_001020 6217 Hs.397609 NM_001020 ENSG00000105193 RPS16 S16 ribosomal protein S16 protein-coding 2.596 1.960 2.605 3.812 2.306 1.307 1.630 1.115 0.372 1.082 0.674 2.084 6.555 2.528 0.156 3.380 3.500 3.255 4.128 3.728 3.932 5.470 2.154 7.463 7.953 2.633 3.714 4.393 5.750 nan 4.235 2.294 3.628 1.928 2.191 2.886 4.055 2.703 1.388 1.187 1.725 0.278 0.446 1.630 2.084 0.578 1.968 0.848 0.887 2071 chr6 15384131 15415971 + 0 NA intron (NM_004973, intron 2 of 17) intron (NM_004973, intron 2 of 17) 150965 NM_001267040 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 1.397 nan 1.226 0.750 0.519 0.279 0.589 0.551 0.161 0.247 0.195 1.449 0.227 0.073 0.078 0.631 0.770 0.956 1.556 0.987 0.974 1.024 0.451 0.389 0.383 0.820 1.287 1.080 1.403 1.548 1.174 0.487 0.779 0.464 0.576 1.468 3.800 0.858 0.694 0.158 0.653 0.078 0.879 0.589 1.449 0.373 0.187 0.251 0.903 757 chr14 23759801 23783983 + 0 NA 5' UTR (NM_001276318, exon 1 of 5) 5' UTR (NM_001276318, exon 1 of 5) 165 NM_001276318 90673 Hs.601513 NM_001276318 ENSG00000235194 PPP1R3E - protein phosphatase 1 regulatory subunit 3E protein-coding nan 2.448 3.490 2.233 1.989 1.080 1.483 1.718 0.247 0.610 0.449 1.489 3.452 1.162 0.131 0.997 1.040 1.748 2.425 3.261 3.095 2.404 0.972 2.869 3.090 2.042 2.610 2.409 nan 3.521 3.387 1.169 1.627 1.901 1.871 7.132 11.297 1.438 0.739 2.091 2.092 0.303 1.031 1.483 1.489 0.572 1.224 0.446 4.378 2515 chr9 74964005 74981978 + 0 NA intron (NM_006007, intron 4 of 5) intron (NM_006007, intron 4 of 5) 6517 NM_001278243 7763 Hs.406096 NM_006007 ENSG00000107372 ZFAND5 ZA20D2|ZFAND5A|ZNF216 zinc finger AN1-type containing 5 protein-coding nan nan nan 3.214 2.380 1.361 1.584 1.545 0.161 1.422 0.694 2.174 3.870 1.460 0.097 2.155 2.685 3.443 nan 4.757 nan 2.206 1.228 10.409 10.585 1.309 1.528 3.635 5.752 1.809 1.768 1.141 2.583 3.557 3.513 2.512 2.756 1.650 1.118 0.711 1.444 0.795 1.275 1.584 2.174 0.681 1.331 0.914 1.118 2172 chr6 122709356 122723129 + 0 NA Intergenic L2b|LINE|L2 -4454 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 2.354 1.342 1.948 1.310 1.592 0.872 1.188 0.374 0.105 0.853 0.430 1.447 2.010 0.505 0.097 1.952 3.184 2.029 2.756 2.083 2.141 6.821 6.679 2.446 2.345 0.748 0.965 1.249 2.846 1.874 1.867 0.744 1.573 1.236 1.120 1.595 1.702 1.118 0.983 0.317 0.903 0.151 0.391 1.188 1.447 0.155 0.605 0.283 0.638 1731 chr22 39914468 39932231 + 0 NA Intergenic AluSx|SINE|Alu 5511 NM_194326 91582 Hs.526933 NM_194326 ENSG00000187051 RPS19BP1 AROS|S19BP ribosomal protein S19 binding protein 1 protein-coding 3.488 nan 3.029 2.737 4.717 2.536 2.650 1.354 0.175 1.562 0.800 5.516 4.845 3.413 0.153 3.999 4.321 3.727 5.139 5.545 5.212 4.949 2.228 3.766 3.714 2.464 nan 5.396 6.632 nan 5.446 1.810 3.246 3.027 4.196 3.003 3.952 2.122 1.086 2.172 2.962 0.836 2.200 2.650 5.516 1.274 2.616 0.964 1.205 461 chr11 63885082 63921278 + 0 NA intron (NM_014067, intron 3 of 10) intron (NM_014067, intron 3 of 10) 30405 NM_014067 28992 Hs.602898 NM_014067 ENSG00000133315 MACROD1 LRP16 MACRO domain containing 1 protein-coding nan 1.582 1.030 0.829 0.925 0.367 1.080 0.148 0.089 0.303 0.269 0.486 3.101 0.132 0.086 1.106 2.024 0.369 0.570 1.459 1.462 0.751 0.345 0.537 0.594 1.247 1.892 1.621 2.001 2.930 3.057 0.767 1.087 0.712 0.658 0.980 2.879 1.255 0.702 6.841 1.230 0.153 0.091 1.080 0.486 0.885 0.239 0.584 0.668 768 chr14 32669577 32674003 + 0 NA TTS (NR_125730).3 TTS (NR_125730).3 539 NR_125730 103625684 NR_125730 ENSG00000207357 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 9.131 2.929 4.082 8.754 5.105 2.583 4.945 7.477 0.403 2.009 1.330 4.637 11.638 2.697 0.210 2.739 4.640 2.407 4.064 11.040 11.388 6.827 4.794 7.786 8.358 5.226 6.304 6.829 11.417 18.173 18.684 4.275 5.578 6.924 6.015 7.915 7.605 4.733 3.724 2.283 3.100 0.560 5.071 4.945 4.637 1.605 3.951 0.892 2.757 2534 chr9 123139895 123152664 + 0 NA Intergenic Intergenic -138951 NR_029604 406939 NR_029604 ENSG00000207814 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA nan nan 4.016 4.956 4.179 2.085 0.402 0.525 0.087 3.344 1.432 2.513 nan 0.034 0.063 0.168 0.316 0.305 0.356 5.098 6.151 4.449 1.718 0.457 0.428 0.335 nan 6.591 5.421 0.422 0.337 0.273 0.334 5.145 5.026 0.249 0.399 nan 1.844 2.175 0.549 1.986 0.482 0.402 2.513 0.191 5.003 0.100 0.117 1642 chr20 57605877 57617906 + 0 NA intron (NR_037930, intron 1 of 5) intron (NR_037930, intron 1 of 5) -4469 NM_006886 514 Hs.177530 NM_006886 ENSG00000124172 ATP5E ATPE|MC5DN3 ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit protein-coding 2.434 2.490 1.733 2.011 1.434 0.990 0.994 1.166 0.134 1.098 0.647 1.671 3.804 3.535 0.179 3.415 nan 1.980 3.068 2.542 2.500 3.608 1.355 4.096 4.016 2.333 3.268 2.503 3.603 3.935 3.319 1.690 3.417 1.838 2.097 2.269 3.100 3.417 1.500 0.519 1.254 0.645 0.621 0.994 1.671 0.567 3.327 0.817 0.848 1607 chr20 33286327 33298782 + 0 NA promoter-TSS (NM_001329431) promoter-TSS (NM_001329431) 8 NM_001329431 58476 Hs.516994 NM_021202 ENSG00000078804 TP53INP2 C20orf110|DOR|PIG-U|PINH|dJ1181N3.1 tumor protein p53 inducible nuclear protein 2 protein-coding 3.705 4.621 2.839 2.108 2.643 1.468 1.127 1.387 0.258 1.312 0.488 2.643 7.181 1.603 0.137 3.255 4.682 3.503 4.915 2.971 nan 4.195 2.131 6.806 7.385 2.232 2.580 3.796 5.439 6.267 5.796 1.061 1.860 2.313 1.904 2.467 nan 1.028 0.683 1.713 3.826 0.353 0.503 1.127 2.643 0.796 1.827 0.619 1.724 132 chr1 61541519 61559863 + 0 NA intron (NM_001134673, intron 1 of 10) intron (NM_001134673, intron 1 of 10) 2711 NM_001134673 4774 Hs.740757 NM_005595 ENSG00000162599 NFIA CTF|NF-I/A|NF1-A|NFI-A|NFI-L nuclear factor I A protein-coding 3.680 2.990 nan 0.922 1.698 0.844 0.662 2.614 0.281 1.483 0.825 0.862 5.360 1.699 0.172 0.935 1.631 2.228 3.234 2.070 1.860 0.206 0.142 0.860 0.908 nan nan 2.619 nan 2.420 2.635 0.321 0.945 2.409 2.293 0.879 1.689 3.397 1.787 2.296 1.543 0.541 1.511 0.662 0.862 0.752 1.668 0.602 0.466 2075 chr6 17703082 17707994 + 0 NA promoter-TSS (NR_134616) promoter-TSS (NR_134616) -823 NR_134616 105374952 Hs.718703 NR_134616 ENSG00000272269 LOC105374952 - uncharacterized LOC105374952 ncRNA 8.082 nan 5.168 5.401 4.339 2.645 4.924 6.958 0.712 2.029 1.171 6.279 9.558 3.360 0.106 6.527 6.489 7.616 10.297 8.832 8.082 8.005 5.657 22.416 22.671 5.128 7.088 6.527 12.071 10.053 10.967 4.244 6.682 9.855 10.145 10.527 8.202 3.355 2.025 2.307 2.786 1.391 4.045 4.924 6.279 1.969 2.509 1.450 2.715 681 chr12 124872734 124914598 + 0 NA intron (NM_001077261, intron 15 of 47) intron (NM_001077261, intron 15 of 47) -71878 NR_106940 102466204 NR_106940 ENSG00000275967 MIR6880 hsa-mir-6880 microRNA 6880 ncRNA 1.456 0.963 1.087 0.445 0.913 0.464 1.135 0.739 0.185 0.793 0.570 0.709 1.487 0.190 0.094 1.077 1.712 0.631 1.351 0.657 0.713 nan 0.233 0.920 0.998 0.979 1.598 1.308 2.424 1.827 2.017 0.742 0.887 0.907 1.092 1.455 3.114 0.886 0.524 2.836 1.177 0.320 0.259 1.135 0.709 1.020 0.810 0.374 0.721 1670 chr21 34481525 34491856 + 0 NA intron (NR_109961, intron 2 of 2) intron (NR_109961, intron 2 of 2) 9316 NR_109961 101928107 Hs.382669 NR_109961 ENSG00000226527 LOC101928107 - uncharacterized LOC101928107 ncRNA 1.600 0.560 0.890 0.419 0.378 0.171 0.295 0.101 0.141 0.045 0.056 0.149 0.635 0.084 0.040 6.586 7.757 2.945 1.968 0.727 0.629 0.055 0.098 2.339 2.125 0.225 0.383 1.763 1.797 2.664 2.847 1.894 1.922 0.044 0.064 0.303 0.551 nan 0.518 0.054 0.093 0.009 0.181 0.295 0.149 0.806 0.033 0.552 0.167 388 chr11 529049 540876 + 0 NA intron (NM_176795, intron 1 of 5) CpG 605 NM_005343 3265 Hs.37003 NM_005343 ENSG00000174775 HRAS C-BAS/HAS|C-H-RAS|C-HA-RAS1|CTLO|H-RASIDX|HAMSV|HRAS1|RASH1|p21ras HRas proto-oncogene, GTPase protein-coding 1.485 3.010 2.208 1.067 1.395 0.609 0.940 0.328 0.122 1.027 0.569 2.807 3.734 0.871 0.052 5.139 7.287 1.877 2.580 2.606 2.540 2.374 0.985 2.682 2.628 0.796 1.268 1.406 2.281 1.235 1.156 2.527 4.023 2.266 2.146 1.143 1.233 1.209 0.771 1.047 2.153 0.526 0.282 0.940 2.807 0.404 0.523 1.609 0.444 1148 chr18 979819 991509 + 0 NA Intergenic Intergenic 80467 NM_001117 116 Hs.531719 NM_001117 ENSG00000141433 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 protein-coding 1.338 0.936 1.695 3.659 0.936 0.500 0.095 0.129 0.055 0.430 0.261 1.790 nan 0.047 0.133 0.287 0.211 0.217 0.291 1.964 2.234 nan 2.568 0.405 0.352 1.017 nan 4.936 5.244 nan 1.388 0.195 0.295 1.481 2.265 0.372 nan nan 2.048 1.308 0.236 0.369 0.362 0.095 1.790 0.433 2.158 0.144 0.095 769 chr14 33160077 33165958 + 0 NA intron (NM_004274, intron 8 of 13) LTR81|LTR|Gypsy -245442 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 1.222 1.726 0.832 2.404 0.334 0.217 0.173 1.053 0.369 0.319 0.143 1.140 0.621 0.682 0.162 0.291 0.171 0.222 0.227 0.651 0.871 3.630 1.762 0.237 0.256 0.410 0.729 3.011 3.691 0.844 0.604 0.136 0.308 0.124 0.215 0.264 0.555 1.831 1.255 10.029 0.409 0.016 0.067 0.173 1.140 0.050 0.105 0.017 0.087 257 chr1 183964108 183979315 + 0 NA intron (NM_001303421, intron 1 of 11) intron (NM_001303421, intron 1 of 11) 35193 NM_001303421 23127 Hs.387995 NM_015101 ENSG00000198756 COLGALT2 C1orf17|GLT25D2 collagen beta(1-O)galactosyltransferase 2 protein-coding nan nan 2.287 0.115 0.234 0.105 0.228 0.302 0.083 0.119 0.186 0.032 0.312 0.186 0.121 0.629 0.523 0.528 0.778 0.353 nan 0.173 0.063 nan 0.343 4.602 5.158 0.409 0.373 0.407 0.221 0.384 0.552 0.214 0.251 0.584 nan 0.511 0.530 0.042 0.177 0.056 0.063 0.228 0.032 0.051 0.060 0.065 0.311 748 chr13 114198013 114208539 + 0 NA intron (NM_017905, intron 12 of 12) intron (NM_017905, intron 12 of 12) -35727 NR_026580 7027 Hs.79353 NM_007111 ENSG00000198176 TFDP1 DILC|DP1|DRTF1|Dp-1 transcription factor Dp-1 protein-coding 0.802 nan 0.892 3.140 0.776 0.397 1.382 0.116 0.108 0.104 0.078 2.220 1.853 0.061 0.073 0.899 0.952 0.369 0.642 3.658 3.516 1.162 0.359 0.288 0.265 0.082 0.169 2.560 3.323 0.378 0.242 0.503 0.469 0.345 0.361 0.389 0.422 1.071 0.570 0.826 5.965 0.073 0.256 1.382 2.220 0.078 0.105 0.084 0.089 133 chr1 61582202 61614305 + 0 NA intron (NM_001145511, intron 2 of 10) intron (NM_001145511, intron 2 of 10) 50273 NM_001134673 4774 Hs.740757 NM_005595 ENSG00000162599 NFIA CTF|NF-I/A|NF1-A|NFI-A|NFI-L nuclear factor I A protein-coding 1.162 1.461 nan 0.419 1.369 0.757 0.342 1.784 0.166 0.884 0.459 0.186 0.950 0.105 0.128 0.568 0.975 0.692 1.121 0.507 0.563 0.133 0.077 0.300 0.285 nan nan 3.019 nan 0.703 0.516 0.275 0.438 1.391 2.354 0.206 0.475 2.351 1.222 2.136 0.643 0.330 0.362 0.342 0.186 0.136 0.958 0.145 0.073 2562 chr9 135497130 135521439 + 0 NA intron (NR_136309, intron 14 of 18) L1MC4a|LINE|L1 29429 NM_001322343 64794 Hs.660767 NM_022779 ENSG00000125485 DDX31 PPP1R25 DEAD-box helicase 31 protein-coding nan 0.766 1.138 0.582 0.695 0.456 0.318 0.119 0.099 0.684 0.394 0.793 1.778 0.068 0.082 0.903 1.002 1.779 2.437 1.416 1.189 nan 0.125 0.475 0.480 2.028 1.836 0.486 0.644 2.055 1.468 0.915 1.537 1.789 2.497 0.557 0.934 3.104 1.603 0.160 0.058 0.553 0.075 0.318 0.793 0.463 0.644 0.615 0.244 607 chr12 52396574 52487841 + 0 NA intron (NM_001202234, intron 2 of 7) AluY|SINE|Alu -2979 NM_002135 3164 Hs.524430 NM_002135 ENSG00000123358 NR4A1 GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3 nuclear receptor subfamily 4 group A member 1 protein-coding nan 1.212 0.912 0.661 1.318 0.768 0.656 0.332 0.091 0.903 0.539 1.111 1.642 0.429 0.068 nan 3.569 1.452 1.839 2.464 nan 2.609 1.198 1.402 1.470 0.652 nan 1.894 nan 1.145 0.952 1.334 2.013 1.103 1.207 0.674 0.882 2.541 1.399 0.723 1.674 0.197 0.710 0.656 1.111 0.516 1.383 0.746 0.186 2478 chr9 6407411 6415738 + 0 NA Intergenic AluSx1|SINE|Alu -1577 NR_046386 115426 Hs.493401 NM_152896 ENSG00000147854 UHRF2 NIRF|RNF107|TDRD23|URF2 ubiquitin like with PHD and ring finger domains 2 protein-coding 2.594 4.262 2.576 2.249 2.213 1.172 2.723 0.982 0.232 1.601 0.714 1.852 3.680 0.950 0.127 1.580 1.575 3.065 4.299 4.225 3.716 4.919 2.028 2.618 2.564 5.301 7.373 2.261 3.548 3.165 3.773 1.674 3.369 3.205 3.018 2.795 nan 2.767 2.152 1.365 1.543 0.592 1.414 2.723 1.852 0.376 1.415 0.773 0.426 94 chr1 40279464 40370392 + 0 NA intron (NM_001312691, intron 1 of 9) AluSx3|SINE|Alu 24255 NR_132405 54802 Hs.356554 NM_017646 ENSG00000043514 TRIT1 GRO1|IPPT|IPT|IPTase|MOD5|hGRO1 tRNA isopentenyltransferase 1 protein-coding 13.685 1.241 nan 17.084 3.226 1.655 6.698 0.291 0.132 0.361 0.289 7.942 2.311 0.338 0.132 0.531 0.674 0.443 0.801 3.872 5.135 0.804 0.363 0.865 0.902 0.914 nan 40.269 34.804 0.812 0.658 0.799 nan 0.124 0.178 1.074 2.574 30.849 21.336 0.791 0.678 0.029 12.310 6.698 7.942 0.142 0.113 0.390 0.692 1408 chr2 16051461 16188966 + 0 NA Intergenic AluJb|SINE|Alu -37842 NM_001329968 10408 Hs.651453 NM_006316 ENSG00000233718 MYCNOS MYCN-AS1|N-CYM|NCYM|NYCM MYCN opposite strand protein-coding 6.517 3.491 7.495 0.369 0.184 0.104 0.114 0.058 0.079 0.096 0.102 0.052 0.772 0.048 0.098 0.578 0.530 0.463 0.765 0.575 0.507 0.801 0.288 0.584 0.564 0.219 0.352 0.459 nan 0.793 0.548 13.595 15.404 17.716 18.199 0.496 nan 0.166 0.291 0.899 0.796 6.373 0.033 0.114 0.052 0.026 0.301 6.955 0.154 1551 chr2 235400992 235423479 + 0 NA Intergenic Intergenic -6538 NM_001282431 10123 Hs.111554 NM_005737 ENSG00000188042 ARL4C ARL7|LAK ADP ribosylation factor like GTPase 4C protein-coding 2.439 nan 2.245 0.861 1.520 0.809 2.489 0.156 0.072 0.802 0.581 1.658 5.398 0.120 0.124 0.368 0.271 0.828 1.359 2.783 1.827 3.392 1.076 0.552 0.616 0.859 1.187 1.633 nan 1.179 1.534 0.376 0.536 1.592 1.664 1.165 2.620 1.330 0.749 1.510 1.026 0.574 0.551 2.489 1.658 0.323 1.223 0.101 0.403 511 chr11 102624155 102665370 + 0 NA intron (NM_002425, intron 7 of 9) MIRc|SINE|MIR 6597 NM_002425 4319 Hs.2258 NM_002425 ENSG00000166670 MMP10 SL-2|STMY2 matrix metallopeptidase 10 protein-coding 0.499 0.863 0.600 0.134 0.367 0.204 0.370 0.052 0.039 0.349 0.263 0.044 0.469 4.079 0.211 0.322 0.224 0.201 0.348 0.394 0.401 0.143 0.073 0.569 0.613 0.184 0.298 0.419 0.546 0.364 0.139 0.224 0.281 0.667 0.871 0.248 0.527 0.590 0.570 0.036 0.098 0.177 0.081 0.370 0.044 0.007 0.062 0.048 0.120 24 chr1 7700223 7717740 + 0 NA intron (NM_015215, intron 7 of 22) intron (NM_015215, intron 7 of 22) -122348 NM_004781 9341 Hs.66708 NM_004781 ENSG00000049245 VAMP3 CEB vesicle associated membrane protein 3 protein-coding 1.042 nan 0.832 1.452 0.548 0.366 0.529 0.077 0.119 0.455 0.175 0.574 2.032 0.068 0.082 0.287 0.254 0.171 0.265 1.956 2.067 2.012 0.885 0.183 0.246 0.383 nan nan 6.095 nan 0.681 0.438 0.392 0.244 0.264 0.430 0.850 1.157 0.714 3.410 0.877 0.093 0.073 0.529 0.574 0.232 0.780 0.040 0.162 1152 chr18 5283942 5300165 + 0 NA exon (NM_001243702, exon 4 of 4) exon (NM_001243702, exon 4 of 4) 3648 NM_001243702 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 1.702 1.876 2.186 2.856 1.862 0.882 0.807 0.920 0.150 1.138 0.605 2.040 nan 1.700 0.127 1.579 2.628 2.177 2.399 5.046 4.070 nan 1.990 2.081 1.948 1.000 nan 7.825 9.485 nan 2.544 0.862 1.653 3.823 3.052 0.781 nan nan 1.423 2.518 1.719 0.875 1.097 0.807 2.040 0.437 1.171 0.368 0.206 951 chr16 30379395 30391100 + 0 NA promoter-TSS (NM_013292) promoter-TSS (NM_013292) -851 NM_013292 29895 Hs.50889 NM_013292 ENSG00000180209 MYLPF HUMMLC2B|MLC2B|MRLC2|MYL11 myosin light chain, phosphorylatable, fast skeletal muscle protein-coding 3.079 2.129 3.022 3.822 3.724 2.313 2.404 1.069 0.219 0.970 0.502 3.207 9.313 1.868 0.085 2.636 3.086 2.719 3.640 4.320 3.645 6.297 2.947 4.289 4.165 2.011 2.909 6.421 8.904 4.144 4.313 1.611 3.075 2.766 2.924 2.349 5.218 2.237 1.103 2.777 2.340 0.727 1.559 2.404 3.207 1.005 2.577 1.055 1.545 1966 chr5 40833129 40836683 + 0 NA intron (NM_000997, intron 1 of 3) intron (NM_000997, intron 1 of 3) 481 NM_000997 6167 Hs.447582 NM_000997 ENSG00000145592 RPL37 L37 ribosomal protein L37 protein-coding 4.466 4.855 9.302 6.282 3.768 2.383 3.937 6.667 1.090 4.427 1.767 4.142 1.579 4.284 0.294 7.997 6.930 9.529 13.021 7.586 8.483 6.464 3.254 11.020 11.609 9.536 11.534 16.407 20.342 18.692 21.067 6.468 9.123 5.428 5.805 9.211 8.226 5.773 3.275 1.472 0.498 0.536 1.372 3.937 4.142 2.149 6.208 1.445 2.876 2468 chr9 2228243 2244466 + 0 NA Intergenic Intergenic 77898 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 1.137 2.227 1.693 1.048 1.254 0.675 0.979 0.325 0.150 1.371 0.661 1.877 4.950 0.081 0.069 0.406 0.348 0.701 1.190 3.334 3.154 3.977 2.156 0.550 0.699 1.677 2.255 2.201 3.194 1.611 2.012 0.724 1.123 1.462 0.996 0.864 nan 2.600 1.682 1.890 3.316 0.195 0.250 0.979 1.877 0.898 0.598 0.583 0.139 1593 chr20 22537862 22568146 + 0 NA intron (NR_001558, intron 1 of 3) intron (NR_001558, intron 1 of 3) 6276 NR_001558 140828 Hs.9842 NR_001558 ENSG00000259974 LINC00261 ALIEN|C20orf56|DEANR1|HCCDR1|NCRNA00261|onco-lncRNA-17 long intergenic non-protein coding RNA 261 ncRNA 0.799 1.138 nan 5.045 7.262 4.102 0.541 0.092 0.084 5.951 2.815 3.383 2.555 0.043 0.060 0.387 0.186 0.080 0.107 2.184 1.943 7.610 3.292 0.090 0.095 0.110 0.204 2.684 3.313 0.298 0.096 0.165 0.233 9.588 7.346 0.188 0.355 4.773 2.597 0.012 0.212 3.349 0.019 0.541 3.383 0.013 1.574 0.042 0.053 603 chr12 50443014 50451841 + 0 NA Intergenic Intergenic -3993 NM_020039 41 Hs.274361 NM_001095 ENSG00000110881 ASIC1 ACCN2|ASIC|BNaC2 acid sensing ion channel subunit 1 protein-coding nan 0.970 1.037 0.361 0.528 0.292 0.994 0.236 0.118 0.175 0.309 1.068 0.416 0.274 0.023 nan 1.228 0.607 0.964 2.554 nan 2.262 0.726 1.390 1.595 1.011 nan 0.680 nan 6.263 6.165 0.762 1.014 0.824 0.394 1.555 3.000 1.108 0.767 0.134 0.729 0.086 0.161 0.994 1.068 3.513 0.405 0.374 0.738 993 chr16 88868337 88879612 + 0 NA intron (NM_030928, intron 9 of 9) intron (NM_030928, intron 9 of 9) 3788 NM_030928 81620 Hs.122908 NM_030928 ENSG00000167513 CDT1 DUP|RIS2 chromatin licensing and DNA replication factor 1 protein-coding nan 2.048 3.747 4.044 4.428 2.352 4.573 0.830 0.301 1.052 0.610 4.273 5.311 3.187 0.118 2.787 3.058 2.231 3.350 2.956 2.659 3.399 1.468 4.963 4.521 1.373 1.897 3.382 5.045 3.816 4.673 1.565 2.614 2.255 2.123 2.819 3.335 2.282 1.190 1.705 2.243 0.607 1.215 4.573 4.273 0.830 2.721 1.075 1.138 1178 chr18 42318831 42326613 + 0 NA intron (NM_001130110, intron 2 of 3) intron (NM_001130110, intron 2 of 3) 61859 NM_015559 26040 Hs.435458 NM_015559 ENSG00000152217 SETBP1 MRD29|SEB SET binding protein 1 protein-coding nan 1.968 4.685 1.095 0.945 0.442 6.626 0.503 0.020 1.328 0.807 2.031 2.461 0.014 0.063 4.769 6.212 0.538 1.099 8.467 8.142 2.969 0.999 0.049 0.069 2.062 2.713 0.648 0.765 8.930 10.640 1.211 2.021 7.189 7.883 2.621 nan 6.465 3.575 1.522 0.207 3.424 5.321 6.626 2.031 1.931 0.770 0.610 2.052 1653 chr20 61982641 61999642 + 0 NA promoter-TSS (NR_110634) promoter-TSS (NR_110634) -199 NR_110634 100130587 Hs.640129 NR_110634 ENSG00000203900 LOC100130587 - uncharacterized LOC100130587 ncRNA 0.692 0.922 1.214 0.082 0.823 0.435 0.513 0.091 0.094 0.056 0.066 0.592 0.729 0.274 0.072 0.612 nan 0.068 0.139 0.692 0.515 0.541 0.201 0.389 0.360 0.198 0.367 0.132 0.206 0.634 0.414 0.472 0.710 0.095 0.100 0.120 0.158 0.676 0.451 3.571 0.318 0.056 0.069 0.513 0.592 0.417 0.137 0.350 0.036 1421 chr2 25561624 25566171 + 0 NA intron (NM_175630, intron 1 of 3) intron (NM_175630, intron 1 of 3) 887 NM_022552 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 4.699 1.774 5.361 4.859 4.637 2.851 4.946 0.661 0.070 6.060 2.408 4.645 13.889 4.104 0.088 1.578 5.645 2.409 2.149 8.422 7.213 5.014 1.765 9.873 7.958 1.393 2.192 6.950 nan 2.165 2.968 2.044 6.116 3.407 2.134 2.062 2.841 1.942 0.894 7.497 9.833 1.125 3.652 4.946 4.645 1.346 5.117 1.803 1.253 2596 chrX 128263142 128281309 + 0 NA Intergenic AluSz|SINE|Alu 385257 NM_001282875 6594 Hs.152292 NM_003069 ENSG00000102038 SMARCA1 ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2|hSNF2L SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 protein-coding 1.040 nan 1.240 0.179 3.344 1.728 0.211 0.035 0.026 0.707 0.487 0.217 0.174 0.018 0.037 0.184 0.133 0.273 0.312 0.129 0.210 0.765 0.259 0.109 0.122 0.191 0.338 0.299 0.514 0.560 0.344 0.065 0.103 1.819 1.667 0.653 1.633 1.146 0.637 0.003 0.040 0.728 0.562 0.211 0.217 0.054 0.156 0.005 1.056 1601 chr20 30908684 30922939 + 0 NA intron (NM_004798, intron 7 of 8) AluJb|SINE|Alu -30336 NM_001164603 171023 Hs.374043 NM_015338 ENSG00000171456 ASXL1 BOPS|MDS additional sex combs like 1, transcriptional regulator protein-coding 0.899 2.308 1.156 2.793 1.316 0.694 0.206 0.176 0.147 1.302 0.489 1.500 1.208 0.094 0.134 0.662 0.797 0.336 0.539 1.006 nan 9.444 4.622 0.418 0.474 0.509 0.844 5.665 8.212 0.550 0.373 0.267 0.526 1.776 3.464 0.373 nan 0.954 0.519 0.070 0.196 0.608 0.062 0.206 1.500 0.027 0.435 0.076 0.147 2250 chr7 30588324 30604880 + 0 NA intron (NR_038889, intron 5 of 6) L2b|LINE|L2 20793 NR_038889 401320 Hs.561708 NR_038889 LOC401320 - uncharacterized LOC401320 ncRNA 1.868 3.875 2.315 0.396 0.967 0.522 6.098 0.450 0.078 0.965 0.570 1.806 6.650 0.132 0.197 0.803 0.833 1.379 1.938 1.242 nan 6.271 3.894 0.696 0.772 0.957 nan nan nan 0.608 0.453 0.439 0.812 2.901 3.565 0.410 nan 2.260 1.504 0.582 0.632 0.735 1.048 6.098 1.806 0.319 0.289 0.387 0.199 1557 chr2 240209891 240217942 + 0 NA intron (NM_006037, intron 2 of 26) intron (NM_006037, intron 2 of 26) -13241 NR_036229 100423043 NR_036229 ENSG00000265215 MIR4269 - microRNA 4269 ncRNA 1.251 nan 1.841 1.382 7.448 4.024 0.860 0.083 0.020 1.033 0.663 3.888 3.315 0.129 0.092 1.837 2.041 0.406 0.614 4.309 3.291 3.828 1.259 0.785 0.798 0.566 0.985 2.463 2.576 0.477 0.397 1.225 1.416 0.569 0.861 0.247 0.358 1.102 0.760 4.377 1.358 0.047 0.541 0.860 3.888 0.133 0.544 0.500 0.139 1877 chr3 193834406 193861915 + 0 NA Intergenic Intergenic -5771 NM_005524 3280 Hs.250666 NM_005524 ENSG00000114315 HES1 HES-1|HHL|HRY|bHLHb39 hes family bHLH transcription factor 1 protein-coding nan 3.712 2.368 3.411 3.162 1.592 1.130 2.771 0.298 1.779 0.771 2.516 nan 1.604 0.079 1.856 2.560 2.762 8.699 2.050 1.559 4.964 2.719 2.771 2.644 0.590 1.123 4.140 5.053 2.566 2.593 1.188 1.681 2.472 2.352 1.282 1.607 1.346 0.751 4.157 0.677 0.686 1.049 1.130 2.516 0.712 1.081 1.151 0.606 2326 chr7 141436555 141441546 + 0 NA intron (NM_001256511, intron 2 of 6) intron (NM_001256511, intron 2 of 6) 643 NM_001256510 6742 Hs.490394 NM_003143 ENSG00000106028 SSBP1 Mt-SSB|SOSS-B1|SSBP|mtSSB single stranded DNA binding protein 1 protein-coding 2.750 1.300 2.026 2.463 2.319 1.218 1.409 1.318 0.192 1.066 1.115 2.722 3.506 4.458 0.270 3.145 2.937 3.223 5.728 2.794 3.106 5.399 1.848 20.634 21.402 2.233 3.173 4.262 5.005 3.708 3.284 3.065 4.184 3.083 3.373 2.830 3.980 4.639 nan 1.376 1.103 0.552 0.901 1.409 2.722 0.293 1.055 1.132 0.568 2456 chr8 145650810 145672313 + 0 NA promoter-TSS (NR_106953) promoter-TSS (NR_106953) -559 NR_106953 102466271 NR_106953 ENSG00000276598 MIR6893 hsa-mir-6893 microRNA 6893 ncRNA 3.343 1.540 nan 3.219 2.322 1.350 1.650 0.865 0.428 0.487 0.263 2.970 4.929 1.289 0.104 1.674 1.884 1.952 2.903 nan 4.820 nan 0.877 4.061 4.357 1.160 1.829 2.122 2.945 1.482 1.480 1.883 3.064 1.036 1.250 1.614 2.083 1.668 0.719 3.373 2.291 0.341 0.913 1.650 2.970 0.465 1.655 1.295 0.823 2537 chr9 124940842 124965232 + 0 NA intron (NM_198469, intron 4 of 4) intron (NM_198469, intron 4 of 4) 30850 NM_198469 254956 Hs.71428 NM_198469 ENSG00000185681 MORN5 C9orf113|C9orf18 MORN repeat containing 5 protein-coding nan nan 0.643 0.716 4.840 2.650 0.215 0.092 0.093 0.168 0.177 0.952 nan 0.058 0.100 0.300 0.583 0.227 0.345 1.510 1.526 0.933 0.450 0.446 0.442 0.109 nan 0.471 0.671 0.613 0.454 0.258 0.310 0.303 0.261 0.177 0.259 nan 1.149 2.671 1.110 0.027 0.107 0.215 0.952 0.064 0.403 0.049 0.030 2203 chr6 162895028 162907179 + 0 NA intron (NM_013987, intron 1 of 10) AluSc|SINE|Alu -247061 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PARK2CRG PARK2 coregulated protein-coding 0.601 nan 0.656 0.152 0.190 0.083 0.201 0.061 0.066 0.065 0.040 0.086 0.204 0.026 0.084 0.483 0.448 0.179 0.301 0.296 0.367 6.444 2.069 0.111 0.091 0.153 0.208 0.365 0.365 nan 0.480 0.124 0.288 0.220 0.398 0.344 0.683 0.426 0.353 0.014 0.043 0.008 0.046 0.201 0.086 0.016 0.050 0.074 0.035 822 chr14 81767475 81782694 + 0 NA intron (NM_033104, intron 4 of 5) intron (NM_033104, intron 4 of 5) -87509 NM_201595 2957 Hs.592334 NM_015859 ENSG00000165417 GTF2A1 TF2A1|TFIIA|TFIIA-42|TFIIAL general transcription factor IIA subunit 1 protein-coding nan 1.919 1.181 0.909 0.653 0.318 2.386 0.774 0.190 0.413 0.189 0.530 0.805 0.028 0.118 0.300 0.349 0.502 1.107 1.089 1.016 3.774 1.377 0.427 0.414 1.036 1.419 1.812 2.562 3.571 3.382 0.177 0.296 2.942 5.149 1.031 3.631 2.032 1.707 0.295 0.490 0.784 0.187 2.386 0.530 0.713 0.154 0.090 1.098 1432 chr2 44993358 45006785 + 0 NA TTS (NM_024766) TTS (NM_024766) 168575 NR_103785 100506108 Hs.503113 NR_103785 ENSG00000236502 SIX3-AS1 SIX3OS SIX3 antisense RNA 1 ncRNA 2.134 nan 1.667 1.959 4.529 2.446 0.981 0.102 0.060 1.094 0.485 3.607 1.369 0.072 0.105 0.322 0.416 0.407 0.631 nan 4.332 3.382 1.205 0.539 0.418 0.484 0.725 2.404 2.842 2.214 1.845 0.297 0.504 4.613 5.165 2.481 8.652 nan 1.630 0.674 1.548 1.793 0.231 0.981 3.607 0.100 0.349 0.140 3.386 438 chr11 45906524 45923146 + 0 NA intron (NM_005456, intron 1 of 11) intron (NM_005456, intron 1 of 11) 7788 NM_005456 9479 Hs.234249 NM_005456 ENSG00000121653 MAPK8IP1 IB1|JIP-1|JIP1|PRKM8IP mitogen-activated protein kinase 8 interacting protein 1 protein-coding nan 2.599 0.891 1.570 1.698 0.801 3.274 0.139 0.005 1.594 0.772 2.835 2.921 0.668 0.083 2.158 3.601 0.593 0.839 4.760 4.938 3.458 1.713 0.436 0.432 2.100 2.755 1.160 1.767 1.675 1.990 1.043 1.713 2.092 1.427 1.301 nan 2.023 1.131 1.172 3.513 0.541 0.688 3.274 2.835 0.819 1.930 0.464 0.273 1772 chr3 52048952 52098063 + 0 NA Intergenic Intergenic 16954 NM_001947 1849 Hs.591664 NM_001947 ENSG00000164086 DUSP7 MKPX|PYST2 dual specificity phosphatase 7 protein-coding 1.194 1.324 nan 0.257 0.371 0.225 0.365 0.290 0.063 0.358 0.201 0.310 0.929 0.178 0.057 0.846 1.265 0.847 1.185 1.120 1.150 1.316 0.433 0.588 0.633 0.537 0.870 0.688 1.053 nan 3.771 0.645 0.921 0.845 0.786 1.291 3.144 1.314 0.649 0.293 0.529 0.194 0.313 0.365 0.310 0.461 0.808 0.284 1.278 1499 chr2 176044362 176047566 + 0 NA intron (NM_001002258, intron 1 of 3) intron (NM_001002258, intron 1 of 3) 427 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5G3 P3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9) protein-coding 3.727 3.070 2.761 2.469 3.539 2.593 2.757 1.416 0.527 1.817 1.292 3.851 9.282 1.767 0.039 3.247 3.953 7.716 10.168 4.891 4.337 5.044 1.899 8.544 9.788 3.210 4.004 14.418 21.937 5.548 5.618 3.162 6.036 2.306 2.255 4.965 6.875 2.834 1.078 1.628 2.375 0.355 1.636 2.757 3.851 1.197 1.652 2.191 2.980 2446 chr8 144357984 144374838 + 0 NA Intergenic AluY|SINE|Alu -2541 NR_120682 100507316 Hs.446671 NR_120682 ENSG00000253716 MINCR LINC01604 MYC-induced long noncoding RNA ncRNA 2.485 1.484 nan 1.578 1.399 0.725 1.536 0.590 0.143 0.438 0.216 1.916 5.168 1.138 0.079 2.426 2.291 1.905 2.891 nan 2.992 nan 0.825 2.339 2.380 1.215 1.914 1.234 1.405 1.467 1.484 1.804 2.767 1.254 1.418 1.402 1.972 1.617 0.990 1.271 2.099 0.188 0.340 1.536 1.916 0.516 3.810 0.648 0.592 472 chr11 65307726 65338765 + 0 NA intron (NM_001164266, intron 1 of 26) intron (NM_001164266, intron 1 of 26) 2454 NM_001130144 4054 Hs.289019 NM_021070 ENSG00000168056 LTBP3 DASS|LTBP-3|LTBP2|STHAG6|pp6425 latent transforming growth factor beta binding protein 3 protein-coding nan 1.623 1.190 1.427 1.573 0.828 1.418 0.543 0.146 0.825 0.438 2.130 2.881 1.761 0.127 1.633 2.984 1.352 2.217 3.064 3.261 2.187 0.726 1.800 1.992 1.395 2.270 3.669 4.106 1.442 1.159 1.201 1.870 1.077 1.101 0.685 1.564 1.688 0.819 1.906 1.776 0.260 0.575 1.418 2.130 0.508 0.734 0.696 0.359 62 chr1 27234288 27250234 + 0 NA Intergenic Intergenic -1694 NM_021969 8431 Hs.427055 NM_021969 ENSG00000131910 NR0B2 SHP|SHP1 nuclear receptor subfamily 0 group B member 2 protein-coding 1.979 1.373 nan 6.115 2.706 1.317 0.964 0.390 0.162 1.525 0.669 1.268 4.430 0.506 0.101 1.028 1.036 1.002 1.431 4.912 5.891 3.309 1.346 1.823 2.030 1.335 1.977 6.450 7.868 1.782 1.740 1.149 2.024 1.165 1.264 1.749 1.635 2.675 1.365 3.705 3.411 0.216 0.263 0.964 1.268 0.388 1.145 0.230 0.302 791 chr14 55516197 55521753 + 0 NA intron (NM_144578, intron 1 of 3) intron (NM_144578, intron 1 of 3) 613 NM_144578 93487 Hs.594338 NM_144578 ENSG00000168175 MAPK1IP1L C14orf32|MISS|c14_5346 mitogen-activated protein kinase 1 interacting protein 1 like protein-coding nan nan 4.912 5.792 4.919 2.595 3.651 2.834 0.290 1.328 0.788 4.590 9.681 3.663 0.223 5.119 4.201 6.950 8.645 9.621 7.711 8.521 4.630 15.253 16.825 3.435 4.160 7.022 10.727 8.842 9.818 3.308 5.619 9.038 10.221 5.013 4.331 nan 1.309 6.214 3.729 1.699 3.090 3.651 4.590 1.298 3.107 1.440 1.441 1070 chr17 39927802 39950224 + 0 NA intron (NM_021991, intron 1 of 14) intron (NM_021991, intron 1 of 14) 3951 NM_021991 3728 Hs.514174 NM_002230 ENSG00000173801 JUP ARVD12|CTNNG|DP3|DPIII|PDGB|PKGB junction plakoglobin protein-coding nan 1.841 1.849 0.764 1.010 0.522 0.634 0.634 0.278 0.601 0.328 1.250 1.907 0.590 0.087 1.457 2.138 0.896 1.816 nan 1.511 2.177 0.644 2.339 2.513 0.259 0.520 4.288 4.349 nan 1.176 0.915 1.449 0.582 0.690 0.622 1.453 1.246 0.748 0.893 0.674 0.098 1.009 0.634 1.250 0.397 2.571 0.478 0.313 147 chr1 87791685 87805113 + 0 NA intron (NM_006769, intron 2 of 4) intron (NM_006769, intron 2 of 4) 4248 NM_006769 8543 Hs.436792 NM_006769 ENSG00000143013 LMO4 - LIM domain only 4 protein-coding 4.119 nan nan 3.914 4.796 2.751 1.995 1.785 0.215 1.563 0.724 2.764 8.790 0.863 0.144 2.835 2.620 3.704 4.582 3.721 2.690 2.143 0.749 6.611 6.482 5.073 6.502 7.039 8.678 1.618 1.590 2.170 3.942 4.362 3.798 2.560 3.491 2.535 1.385 2.229 1.087 1.268 3.755 1.995 2.764 0.333 1.258 1.578 2.105 249 chr1 182053116 182093826 + 0 NA Intergenic L1MEg|LINE|L1 -42624 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding nan nan 1.021 0.126 0.233 0.122 0.292 0.140 0.198 0.134 0.177 0.030 0.481 0.053 0.117 1.464 1.298 5.785 6.550 0.522 nan 0.154 0.084 nan 0.824 0.246 0.493 0.309 0.293 0.365 0.210 1.897 1.968 0.094 0.118 0.272 nan 0.389 0.423 0.031 0.187 0.021 0.103 0.292 0.030 0.110 0.034 0.617 0.099 2396 chr8 102146027 102172480 + 0 NA Intergenic Intergenic 58707 NM_001267708 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 2.295 nan nan 0.624 1.531 0.757 1.538 2.808 0.209 0.260 0.204 1.007 4.897 0.054 0.068 0.512 0.662 0.561 1.203 2.479 1.982 nan 0.668 0.917 1.068 1.584 nan 5.132 nan nan 0.689 0.472 0.637 3.177 3.631 0.458 nan 1.726 1.027 2.239 1.589 0.565 0.330 1.538 1.007 0.628 0.641 0.340 0.243 2368 chr8 59852162 59876623 + 0 NA intron (NM_014729, intron 2 of 8) intron (NM_014729, intron 2 of 8) 167375 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 1.779 nan 1.257 0.451 2.496 1.447 0.289 0.218 0.072 0.436 0.298 0.788 0.812 0.063 0.073 0.295 0.215 0.239 0.346 1.206 1.265 0.962 0.357 0.079 0.059 1.852 nan 0.552 0.642 0.437 0.193 0.087 0.113 2.138 2.918 0.153 0.273 2.728 1.210 0.277 0.337 0.657 1.074 0.289 0.788 0.067 0.311 0.032 0.070 2603 chrX 153596162 153609362 + 0 NA intron (NM_001110556, intron 1 of 47) CpG 244 NM_001110556 2316 Hs.195464 NM_001456 ENSG00000196924 FLNA ABP-280|ABPX|CSBS|CVD1|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD filamin A protein-coding 4.269 3.194 6.054 2.141 4.074 2.123 4.899 1.442 0.196 0.630 0.422 2.259 6.332 1.451 0.039 2.655 3.348 3.050 5.181 5.365 4.106 4.195 1.531 8.096 8.059 1.948 2.711 4.068 6.289 2.868 3.087 2.293 4.449 1.996 1.879 3.139 4.088 1.504 0.867 2.587 2.295 0.484 2.164 4.899 2.259 0.787 1.415 1.212 1.344 1935 chr5 890125 897898 + 0 NA intron (NM_004237, intron 1 of 12) intron (NM_004237, intron 1 of 12) 1042 NM_004237 9319 Hs.436187 NM_004237 ENSG00000071539 TRIP13 16E1BP thyroid hormone receptor interactor 13 protein-coding 2.275 2.137 5.586 3.932 2.010 1.093 2.389 2.002 0.165 3.278 1.152 3.092 4.525 2.219 0.124 3.421 2.985 3.067 nan 4.997 4.504 4.057 1.326 2.349 2.405 3.974 6.342 nan 9.236 nan 4.801 1.345 2.881 2.461 2.526 1.431 1.869 2.844 nan 1.178 1.920 0.448 0.685 2.389 3.092 1.259 2.166 0.611 0.590 2539 chr9 126042256 126048477 + 0 NA Intergenic L2|LINE|L2 -14511 NM_001171137 55342 Hs.287659 NM_018387 ENSG00000165209 STRBP HEL162|ILF3L|SPNR|p74 spermatid perinuclear RNA binding protein protein-coding nan nan 0.652 0.283 0.291 0.388 0.451 0.058 0.104 0.637 0.161 0.133 nan 0.035 0.065 0.242 0.340 0.299 0.295 0.311 0.457 2.702 0.879 0.339 0.314 0.308 nan 0.387 0.500 0.452 0.269 0.152 0.191 0.462 0.558 0.163 0.378 nan 1.903 0.061 0.085 0.031 0.038 0.451 0.133 0.015 4.800 0.079 0.160 1869 chr3 186990746 186995194 + 0 NA intron (NR_033519, intron 1 of 9) intron (NR_033519, intron 1 of 9) -16090 NR_135551 101929130 NR_135551 ENSG00000283175 LOC101929130 - uncharacterized LOC101929130 ncRNA 1.069 0.969 0.611 0.079 0.439 0.144 0.485 0.120 0.036 0.129 0.093 0.055 0.554 0.048 0.110 8.466 8.491 13.450 11.609 0.344 0.378 0.185 0.096 0.554 0.392 0.052 0.230 0.314 0.233 3.337 3.513 5.983 7.731 0.038 0.044 0.209 0.256 0.105 0.279 0.026 0.059 0.022 0.037 0.485 0.055 0.021 4.895 0.029 1674 chr21 35894091 35935094 + 0 NA intron (NM_004414, intron 1 of 3) MLT1G1|LTR|ERVL-MaLR -15284 NM_203418 1827 Hs.282326 NM_004414 ENSG00000159200 RCAN1 ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1 regulator of calcineurin 1 protein-coding 0.750 0.689 0.867 0.156 0.273 0.121 0.836 0.823 0.118 0.099 0.083 0.196 0.858 0.059 0.086 1.183 1.049 4.007 5.694 0.462 0.519 1.095 0.382 0.329 0.320 0.184 0.321 0.538 0.556 0.424 0.219 0.371 0.311 0.256 0.342 0.278 0.552 nan 0.693 0.575 0.413 0.047 0.084 0.836 0.196 0.033 0.077 0.058 0.179 50 chr1 22643264 22652286 + 0 NA Intergenic Intergenic 55043 NR_039613 100616433 NR_039613 ENSG00000266564 MIR4418 - microRNA 4418 ncRNA 1.326 0.996 nan 0.265 1.009 0.426 5.874 0.055 0.036 0.585 0.772 0.292 1.596 0.056 0.088 6.033 7.069 0.189 0.199 1.861 1.790 1.828 1.576 0.384 0.341 1.077 1.461 0.616 0.938 0.896 0.860 0.560 0.818 2.261 2.248 0.745 1.369 0.752 0.800 0.111 0.525 1.065 2.667 5.874 0.292 0.483 0.136 0.704 0.248 1135 chr17 78636352 78682835 + 0 NA intron (NM_001163034, intron 3 of 29) intron (NM_001163034, intron 3 of 29) 119839 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 1.254 1.037 1.721 0.967 0.518 0.313 0.719 0.218 0.135 0.199 0.199 0.619 1.489 0.073 0.118 0.541 0.793 0.284 0.453 1.171 1.239 1.496 0.342 0.433 0.449 nan 1.327 3.854 4.212 1.240 1.057 0.723 0.909 0.912 1.039 0.481 0.977 nan 0.686 1.773 1.844 0.166 0.152 0.719 0.619 0.323 2.579 0.595 0.208 2337 chr7 156791723 156816644 + 0 NA promoter-TSS (NM_005515) promoter-TSS (NM_005515) 632 NR_038835 645249 Hs.224879 NR_038835 ENSG00000243479 MNX1-AS1 CCAT5 MNX1 antisense RNA 1 (head to head) ncRNA 0.777 0.878 nan 1.981 4.601 2.431 1.084 0.070 0.158 1.147 0.510 2.023 1.220 0.900 0.130 3.515 5.092 1.112 1.415 2.293 2.148 2.155 0.714 0.110 0.111 0.361 0.730 3.688 4.325 1.171 1.506 4.342 6.051 0.967 0.869 0.127 0.208 1.624 1.011 1.626 1.555 0.160 0.697 1.084 2.023 0.259 0.485 2.700 0.049 2222 chr7 6534692 6545001 + 0 NA intron (NM_001145118, intron 20 of 21) AluSx3|SINE|Alu -15997 NM_006854 11014 Hs.654552 NM_006854 ENSG00000136240 KDELR2 ELP-1|ERD2.2 KDEL endoplasmic reticulum protein retention receptor 2 protein-coding 1.520 1.756 7.631 1.216 1.447 1.068 0.213 0.117 0.157 1.108 0.413 1.413 nan 0.697 0.134 1.951 3.035 0.792 nan 2.427 1.961 nan 1.272 4.129 4.423 0.493 0.689 nan 3.775 0.540 0.433 0.552 0.741 1.014 0.734 0.383 0.676 0.860 0.578 1.452 1.652 0.203 0.734 0.213 1.413 0.450 0.542 0.333 0.119 2010 chr5 118650735 118665947 + 0 NA intron (NM_001286815, intron 2 of 2) L2b|LINE|L2 -10529 NM_001286814 25816 Hs.618488 NM_014350 ENSG00000145779 TNFAIP8 GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2 TNF alpha induced protein 8 protein-coding 1.587 1.755 1.187 0.362 0.685 0.346 0.472 0.827 0.176 0.400 0.339 0.039 2.160 0.174 0.115 0.248 0.143 0.480 1.685 0.562 0.696 1.678 0.399 0.143 0.155 2.010 nan 1.107 1.342 1.345 1.081 0.120 0.200 3.546 5.239 0.332 1.359 1.896 0.978 0.762 0.146 1.236 0.400 0.472 0.039 0.400 0.206 0.020 0.356 1564 chr20 340965 364377 + 0 NA Intergenic Intergenic -8602 NM_021158 57761 Hs.516826 NM_021158 ENSG00000101255 TRIB3 C20orf97|NIPK|SINK|SKIP3|TRB3 tribbles pseudokinase 3 protein-coding 1.521 2.102 1.296 1.939 2.631 1.344 0.901 1.734 0.232 0.629 0.250 1.149 3.091 1.576 0.119 2.164 3.646 0.565 1.006 1.041 1.012 3.175 0.771 2.974 2.921 0.828 1.206 1.686 1.241 1.850 2.003 3.527 3.756 0.487 1.220 1.216 3.926 0.460 0.369 1.123 2.030 0.152 1.592 0.901 1.149 0.726 2.145 1.505 0.953 927 chr16 3054048 3064673 + 0 NA Intergenic Intergenic -3097 NM_020982 9080 Hs.296949 NM_020982 ENSG00000213937 CLDN9 - claudin 9 protein-coding 0.951 nan 1.166 0.824 4.070 2.452 1.300 0.064 0.106 0.843 0.518 4.119 2.527 0.866 0.083 0.920 1.749 0.245 0.438 5.227 5.582 nan 0.484 0.419 0.424 0.431 nan 1.827 2.883 0.770 0.504 0.417 0.709 1.258 0.846 0.433 0.898 1.634 1.003 3.735 6.722 0.285 2.509 1.300 4.119 0.941 0.383 0.354 0.128 1929 chr4 185481825 185486293 + 0 NA Intergenic Intergenic 61967 NR_131966 105377586 Hs.338354 NR_131965 ENSG00000254233 LVCAT8 - liver cancer-associated transcript 8 ncRNA nan 0.613 nan 0.059 0.238 0.143 0.087 0.099 0.071 0.090 0.139 0.309 0.024 0.063 2.504 2.426 10.199 11.771 0.231 0.340 0.124 0.041 1.206 1.227 0.030 0.136 0.114 0.289 0.360 0.077 0.499 0.756 0.037 0.069 0.082 0.211 0.228 0.191 0.071 0.087 0.139 0.046 0.221 504 chr11 94799260 94803388 + 0 NA non-coding (NR_103726, exon 1 of 2) non-coding (NR_103726, exon 1 of 2) 1283 NM_032102 10929 Hs.476680 NM_032102 ENSG00000263465 SRSF8 DSM-1|SFRS2B|SRP46 serine and arginine rich splicing factor 8 protein-coding 4.680 nan 3.786 5.306 3.771 2.600 4.971 0.738 0.246 2.772 1.282 2.841 11.609 2.805 0.201 11.267 15.022 4.770 nan 13.661 11.064 4.362 1.004 24.396 25.345 6.984 7.100 7.641 13.204 9.553 12.288 7.603 14.407 7.677 6.181 5.287 6.074 4.904 2.653 6.604 5.407 1.035 3.074 4.971 2.841 1.605 3.171 6.209 2.215 684 chr12 125115897 125182348 + 0 NA Intergenic L1ME3|LINE|L1 -97112 NM_001206654 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 1.531 1.294 2.016 0.159 0.465 0.214 0.466 0.469 0.192 0.175 0.146 0.481 0.977 0.248 0.108 0.518 0.883 0.332 0.905 0.813 0.864 nan 0.307 0.278 0.330 2.276 2.749 0.952 1.204 3.361 3.236 0.361 0.344 0.352 0.517 1.331 3.795 1.192 0.849 0.620 0.394 0.092 0.117 0.466 0.481 0.712 0.570 0.094 1.232 1300 chr19 37957029 37961597 + 0 NA promoter-TSS (NM_001321992) promoter-TSS (NM_001321992) 639 NM_001300993 148268 Hs.126962 NM_144694 ENSG00000171827 ZNF570 - zinc finger protein 570 protein-coding 4.588 2.535 1.339 7.324 3.429 1.687 1.961 1.683 0.247 0.858 0.600 4.389 22.089 7.690 0.153 2.227 3.058 3.355 4.643 7.573 5.889 5.708 1.150 9.961 10.194 1.895 2.968 4.170 5.183 nan 5.397 1.403 4.218 4.952 3.494 2.256 3.608 4.209 1.860 3.537 4.528 0.793 1.725 1.961 4.389 0.938 3.462 1.274 0.971 2322 chr7 139474328 139485633 + 0 NA intron (NM_001166254, intron 1 of 14) intron (NM_001166254, intron 1 of 14) 1933 NM_001166254 6916 Hs.520757 NM_001061 ENSG00000059377 TBXAS1 BDPLT14|CYP5|CYP5A1|GHOSAL|THAS|TS|TXAS|TXS thromboxane A synthase 1 protein-coding nan nan nan 0.937 1.241 0.596 0.968 0.828 0.200 1.671 0.746 3.754 2.819 1.132 0.137 2.686 3.618 2.589 2.577 2.695 2.230 nan 0.825 4.035 3.862 1.003 nan 1.348 2.101 nan 2.116 1.718 4.314 1.931 1.338 2.314 2.884 3.172 nan 1.212 2.207 0.328 0.538 0.968 3.754 0.421 1.339 1.149 0.709 103 chr1 43145876 43158924 + 0 NA intron (NM_004559, intron 2 of 7) MIR|SINE|MIR 3742 NR_132737 4904 Hs.473583 NM_004559 ENSG00000065978 YBX1 BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1 Y-box binding protein 1 protein-coding 19.720 1.530 nan 1.418 1.794 0.850 1.685 1.127 0.161 2.022 1.092 3.081 2.795 1.589 0.162 2.430 2.231 1.969 2.872 4.025 3.794 2.399 0.819 5.374 5.509 2.440 nan nan 4.010 4.961 5.479 3.657 nan 1.500 1.467 4.009 4.550 2.101 1.107 1.283 1.400 0.279 0.785 1.685 3.081 0.669 0.996 2.167 1.509 442 chr11 46430840 46490660 + 0 NA intron (NM_001300731, intron 11 of 16) AluJr4|SINE|Alu -12607 NR_036118 100422825 NR_036118 ENSG00000283497 MIR3160-2 mir-3160-2 microRNA 3160-2 ncRNA nan 1.120 1.090 0.961 1.554 0.812 0.529 0.205 0.126 0.393 0.308 0.540 1.082 0.095 0.139 0.611 0.783 0.335 0.414 1.942 2.143 1.597 0.467 0.393 0.416 0.753 1.127 0.364 0.442 0.677 0.517 0.314 0.481 1.084 1.196 0.971 nan 1.513 0.824 0.900 0.206 0.313 0.370 0.529 0.540 0.094 0.138 0.079 1.126 649 chr12 103419093 103426965 + 0 NA Intergenic MIRc|SINE|MIR 71577 NM_004316 429 Hs.703025 NM_004316 ENSG00000139352 ASCL1 ASH1|HASH1|MASH1|bHLHa46 achaete-scute family bHLH transcription factor 1 protein-coding 0.903 1.618 nan 1.503 1.060 0.601 1.187 0.096 0.045 0.427 0.397 1.401 6.640 0.070 0.113 0.273 0.089 0.140 0.225 1.889 1.845 1.143 0.391 0.136 0.201 0.180 0.375 1.850 1.926 0.594 0.354 0.046 0.138 0.568 0.307 0.292 0.629 2.846 1.784 6.742 7.609 0.121 0.031 1.187 1.401 0.112 0.467 0.012 0.109 2226 chr7 10973492 10982240 + 0 NA intron (NM_002489, intron 2 of 3) intron (NM_002489, intron 2 of 3) 1947 NM_002489 4697 Hs.50098 NM_002489 ENSG00000189043 NDUFA4 CI-9k|CI-MLRQ|MLRQ NDUFA4, mitochondrial complex associated protein-coding nan 2.374 nan 3.480 2.847 1.706 2.596 2.608 0.123 0.951 0.453 3.370 5.159 3.088 0.224 nan 5.660 4.237 5.398 6.083 5.775 4.930 3.064 16.709 17.894 3.234 3.845 6.714 8.021 3.167 2.645 3.379 5.297 4.605 4.967 3.879 4.693 3.110 1.914 2.245 2.001 0.872 1.344 2.596 3.370 0.576 1.799 2.234 1.370 727 chr13 77899162 77905305 + 0 NA Intergenic Intergenic -1056 NM_015057 23077 Hs.591221 NM_015057 ENSG00000005810 MYCBP2 Myc-bp2|PAM|Phr MYC binding protein 2, E3 ubiquitin protein ligase protein-coding nan 2.475 4.535 3.887 5.256 2.949 4.939 2.443 0.183 1.416 0.696 3.662 11.471 1.657 0.129 6.643 10.030 3.438 4.492 7.034 4.961 6.880 1.893 3.693 3.628 1.565 2.015 4.148 4.632 nan 7.392 5.430 10.830 1.869 1.164 5.100 6.387 0.820 0.554 1.747 6.223 0.464 4.727 4.939 3.662 1.668 1.386 5.538 1.819 2054 chr6 1669351 1694988 + 0 NA intron (NM_001500, intron 9 of 10) AluJo|SINE|Alu 71488 NM_001453 2296 Hs.348883 NM_001453 ENSG00000054598 FOXC1 ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 1.009 0.957 1.463 0.846 0.565 0.366 0.329 1.044 0.164 0.365 0.178 0.319 0.219 0.063 0.114 0.473 0.342 2.062 4.421 0.521 0.485 0.330 0.177 0.455 0.427 0.675 1.062 0.513 0.805 0.470 0.332 0.207 0.301 0.223 0.245 0.258 0.383 1.056 0.597 0.055 0.106 0.018 0.136 0.329 0.319 0.170 0.435 0.078 0.077 1694 chr21 45652844 45671570 + 0 NA Intergenic CpG-17318 -1320 NM_001283051 23308 Hs.14155 NM_015259 ENSG00000160223 ICOSLG B7-H2|B7H2|B7RP-1|B7RP1|CD275|GL50|ICOS-L|ICOSL|LICOS inducible T-cell costimulator ligand protein-coding nan 0.889 2.892 0.267 2.982 1.604 0.226 0.131 0.026 0.083 0.062 2.061 3.658 0.121 0.050 0.722 1.272 0.394 0.746 1.113 1.102 nan 0.495 0.730 0.625 0.106 nan 2.642 4.290 0.758 0.620 1.163 1.972 0.156 0.266 0.476 0.780 0.740 0.508 5.933 2.092 0.046 0.047 0.226 2.061 0.419 0.082 1.667 0.229 1013 chr17 7482145 7493223 + 0 NA promoter-TSS (NR_136401) promoter-TSS (NR_136401) -287 NR_136402 100996842 Hs.720681 NM_001322800 ENSG00000233223 LOC100996842 - uncharacterized LOC100996842 protein-coding 2.859 1.625 2.983 1.415 3.228 1.983 1.609 0.531 0.072 0.619 0.402 2.469 2.529 2.950 0.283 5.971 6.017 5.537 7.276 4.068 3.969 4.894 2.916 3.308 3.736 3.372 4.462 6.079 7.332 1.992 1.817 2.118 2.517 1.881 2.509 4.224 5.175 1.289 0.791 2.251 1.138 0.313 1.461 1.609 2.469 0.779 3.376 0.756 2.519 1304 chr19 39137316 39163066 + 0 NA intron (NM_001322033, intron 1 of 20) intron (NM_001322033, intron 1 of 20) 11935 NM_004924 81 Hs.270291 NM_004924 ENSG00000130402 ACTN4 ACTININ-4|FSGS|FSGS1 actinin alpha 4 protein-coding 2.413 1.642 3.422 2.618 0.846 0.460 0.681 2.566 0.754 0.646 0.350 1.321 5.665 0.649 0.152 0.862 1.028 2.215 5.660 1.232 1.636 1.408 0.428 2.092 2.155 1.811 2.779 2.257 2.808 nan 2.389 1.118 1.916 1.155 1.901 1.487 3.231 1.609 1.022 0.769 0.384 0.391 0.535 0.681 1.321 0.550 1.135 0.704 1.230 582 chr12 14946777 14959135 + 0 NA intron (NM_016312, intron 3 of 11) intron (NM_016312, intron 3 of 11) 3445 NM_016312 51729 Hs.655138 NM_016312 ENSG00000084463 WBP11 NPWBP|PPP1R165|SIPP1|WBP-11 WW domain binding protein 11 protein-coding 2.542 1.187 1.820 1.988 1.462 0.716 0.696 0.434 0.052 1.278 0.736 1.017 2.177 0.973 0.159 1.056 0.886 1.639 2.533 nan 3.028 4.387 1.705 3.299 3.493 1.554 2.006 1.716 2.468 2.644 2.091 1.222 1.885 1.010 1.267 4.631 9.068 1.168 0.694 0.559 0.625 0.111 1.032 0.696 1.017 0.101 0.524 0.511 2.896 418 chr11 17859456 17871599 + 0 NA intron (NM_012139, intron 10 of 10) MER5A|DNA|hAT-Charlie 108032 NM_004976 3746 Hs.552896 NM_004976 ENSG00000129159 KCNC1 EPM7|KV3.1|KV4|NGK2 potassium voltage-gated channel subfamily C member 1 protein-coding 0.767 nan 2.849 0.450 0.330 0.100 0.469 0.148 0.093 0.310 0.144 0.171 0.539 0.018 0.091 nan 6.083 0.212 0.296 1.106 1.157 0.771 0.233 0.475 0.435 0.897 nan 0.348 0.592 0.779 0.895 0.341 0.342 0.860 1.203 0.274 0.477 0.651 nan 0.069 0.170 0.102 0.713 0.469 0.171 0.073 0.079 0.040 0.174 1727 chr22 38567401 38600236 + 0 NA Intergenic L2a|LINE|L2 -5982 NM_001199562 8398 Hs.170479 NM_003560 ENSG00000184381 PLA2G6 CaI-PLA2|GVI|INAD1|IPLA2-VIA|NBIA2|NBIA2A|NBIA2B|PARK14|PLA2|PNPLA9|iPLA2|iPLA2beta phospholipase A2 group VI protein-coding 1.739 nan 1.321 1.363 1.967 1.012 1.066 1.019 0.210 0.566 0.302 2.158 1.942 1.172 0.126 3.718 4.202 2.477 3.120 1.809 1.703 1.770 0.785 2.290 2.478 0.892 nan 3.061 3.799 nan 1.096 0.833 0.902 1.572 2.420 0.926 1.435 1.672 0.879 1.232 0.897 0.337 0.282 1.066 2.158 0.445 2.258 0.458 0.481 1656 chr20 62579230 62590789 + 0 NA non-coding (NR_027287, exon 1 of 1) non-coding (NR_027287, exon 1 of 1) 272 NR_027287 100113386 Hs.551552 NR_027287 UCKL1-AS1 UCKL1-AS|UCKL1AS|UCKL1OS UCKL1 antisense RNA 1 ncRNA 3.007 3.040 3.981 3.419 1.908 1.067 1.350 0.663 0.208 0.831 0.459 2.188 6.096 1.643 0.119 4.962 nan 1.462 2.007 3.424 3.404 3.813 1.369 9.666 10.364 2.205 3.515 4.626 6.821 2.598 3.172 1.863 3.325 1.229 1.287 2.034 2.721 2.220 1.391 1.734 2.904 0.231 1.101 1.350 2.188 1.626 2.643 1.990 1.264 1726 chr22 37954906 37966019 + 0 NA intron (NM_152243, intron 1 of 2) intron (NM_152243, intron 1 of 2) 3991 NM_152243 11135 Hs.225356 NM_152243 ENSG00000128283 CDC42EP1 BORG5|CEP1|MSE55 CDC42 effector protein 1 protein-coding 1.210 nan 0.568 0.159 0.342 0.231 0.773 1.136 0.304 0.120 0.029 0.097 0.698 3.633 0.122 4.175 5.627 6.071 9.629 0.323 0.345 0.481 0.086 0.803 1.142 0.158 nan 0.177 0.340 nan 0.544 0.862 0.670 0.124 0.238 0.218 0.335 0.515 0.292 0.030 0.088 0.017 0.164 0.773 0.097 0.209 0.118 0.104 0.067 576 chr12 12670577 12677597 + 0 NA 5' UTR (NM_030640, exon 2 of 7) 5' UTR (NM_030640, exon 2 of 7) 41361 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 1.110 1.177 1.089 2.221 1.479 0.549 0.308 0.097 0.024 1.912 0.529 2.109 0.494 0.134 0.091 0.366 0.222 0.330 0.794 nan 1.236 11.051 5.558 0.756 0.671 0.856 1.218 1.339 0.922 0.338 0.161 0.256 0.275 1.130 2.054 0.388 0.717 2.921 1.202 0.071 0.317 0.152 0.067 0.308 2.109 0.014 0.159 0.070 0.282 631 chr12 58221153 58247586 + 0 NA intron (NM_005730, intron 1 of 7) intron (NM_005730, intron 1 of 7) 6378 NM_005730 10106 Hs.524530 NM_005730 ENSG00000175215 CTDSP2 OS4|PSR2|SCP2 CTD small phosphatase 2 protein-coding nan 1.572 1.691 1.810 1.194 0.627 1.010 1.186 0.214 1.287 0.595 2.543 2.479 1.399 0.077 nan 2.623 1.417 2.005 2.827 nan 2.429 0.773 2.999 2.969 1.211 nan 3.276 nan 1.848 1.676 1.160 1.769 0.627 0.707 1.438 2.058 2.495 1.225 0.904 2.641 0.155 0.818 1.010 2.543 0.416 0.611 0.857 0.820 2551 chr9 130284050 130348926 + 0 NA intron (NM_001035534, intron 1 of 13) intron (NM_001035534, intron 1 of 13) 14908 NM_022833 64855 Hs.522401 NM_022833 ENSG00000136830 FAM129B C9orf88|MEG-3|MINERVA|OC58|bA356B19.6 family with sequence similarity 129 member B protein-coding nan 1.922 3.445 2.983 1.931 0.877 0.609 0.719 0.204 0.849 0.405 2.846 3.759 0.254 0.074 0.479 0.619 0.638 1.320 4.263 4.698 nan 0.389 1.238 1.365 0.636 0.970 4.262 5.096 1.684 1.586 0.276 0.377 1.725 1.679 0.416 0.533 1.342 0.715 0.962 0.490 0.721 0.267 0.609 2.846 0.912 0.510 0.108 0.160 1914 chr4 106195776 106200828 + 0 NA 3' UTR (NM_001127208, exon 11 of 11) 3' UTR (NM_001127208, exon 11 of 11) 75736 NR_126420 104384744 Hs.624109 NR_126420 TET2-AS1 - TET2 antisense RNA 1 ncRNA 0.694 nan nan 0.785 1.232 0.539 0.251 0.193 0.128 0.313 0.134 0.982 0.577 0.128 0.058 0.297 0.202 8.327 nan 1.387 1.309 0.243 0.012 0.224 0.209 0.349 nan 1.071 1.591 0.946 0.759 0.140 0.315 0.780 1.414 0.248 nan 1.025 0.573 0.133 0.544 0.169 0.203 0.251 0.982 0.039 0.080 0.019 0.072 1096 chr17 55920132 56038969 + 0 NA intron (NM_001271875, intron 1 of 10) AluSq2|SINE|Alu 1200 NM_001292025 404093 Hs.46679 NM_001271875 ENSG00000180891 CUEDC1 - CUE domain containing 1 protein-coding 2.059 3.097 3.114 1.944 4.119 2.180 1.044 1.363 0.385 1.428 0.772 3.191 5.216 0.335 0.116 1.562 2.675 0.922 1.825 2.649 2.806 3.089 1.208 nan 1.553 1.771 2.361 nan nan 2.648 2.285 1.120 2.001 3.117 3.190 2.175 6.073 2.143 1.129 1.170 2.446 1.597 1.484 1.044 3.191 0.628 0.993 1.431 2.125 1309 chr19 39351234 39383285 + 0 NA intron (NM_001195833, intron 2 of 11) intron (NM_001195833, intron 2 of 11) 1660 NM_198445 126432 Hs.446933 NM_198445 ENSG00000187994 RINL - Ras and Rab interactor like protein-coding 1.543 2.093 2.874 2.730 1.919 0.986 0.336 0.218 0.232 1.813 0.887 1.378 1.710 0.200 0.138 0.681 1.091 0.290 0.480 1.363 1.507 5.836 2.254 0.766 0.749 0.461 0.796 3.173 2.510 nan 0.653 0.621 0.750 1.247 1.060 0.556 1.184 2.662 1.175 0.529 0.346 0.407 0.280 0.336 1.378 0.261 0.993 0.169 0.220 1649 chr20 61445365 61472321 + 0 NA intron (NM_001853, intron 16 of 31) intron (NM_001853, intron 16 of 31) 10429 NM_001853 1299 Hs.716639 NM_001853 ENSG00000092758 COL9A3 DJ885L7.4.1|EDM3|IDD|MED collagen type IX alpha 3 chain protein-coding 1.925 1.436 0.832 0.315 0.417 0.166 0.385 0.172 0.101 0.163 0.140 0.434 1.076 0.293 0.096 3.046 nan 0.907 1.224 0.890 0.819 0.865 0.261 0.827 0.953 0.388 0.679 0.347 0.347 0.780 0.702 1.009 1.433 0.131 0.167 0.336 0.521 0.808 0.632 0.561 0.400 0.021 0.143 0.385 0.434 0.793 0.402 0.652 0.114 81 chr1 33720494 33727663 + 0 NA intron (NM_152493, intron 1 of 8) intron (NM_152493, intron 1 of 8) 1904 NM_152493 149076 Hs.743358 NM_152493 ENSG00000160094 ZNF362 RN|lin-29 zinc finger protein 362 protein-coding 5.057 nan 6.981 3.638 3.298 1.789 3.948 1.375 0.089 2.166 1.005 10.900 5.410 3.244 0.107 2.176 3.405 5.738 6.975 12.598 11.520 nan 1.286 2.668 2.515 3.212 4.368 8.506 12.666 nan 4.913 2.292 4.179 1.323 1.004 3.930 3.955 1.792 nan 2.529 1.947 0.290 2.666 3.948 10.900 0.925 1.334 1.035 1.586 1007 chr17 7106915 7125779 + 0 NA intron (NR_135527, intron 3 of 20) AluSg4|SINE|Alu -4097 NM_001270447 37 Hs.437178 NM_000018 ENSG00000072778 ACADVL ACAD6|LCACD|VLCAD acyl-CoA dehydrogenase, very long chain protein-coding 2.369 1.560 1.494 0.731 2.246 1.327 2.543 0.431 0.060 0.403 0.218 1.669 2.779 7.248 0.327 2.208 3.025 0.763 1.348 4.765 4.458 2.542 1.594 0.852 0.855 1.252 1.878 2.336 3.946 2.043 1.765 0.695 1.033 0.791 0.675 4.274 10.533 0.981 0.617 1.619 0.929 0.188 0.446 2.543 1.669 1.130 1.581 0.445 4.862 39 chr1 11739684 11753873 + 0 NA intron (NM_001127325, intron 1 of 8) intron (NM_001127325, intron 1 of 8) 4900 NM_001127325 10459 Hs.19400 NM_006341 ENSG00000116670 MAD2L2 FANCV|MAD2B|POLZ2|REV7 MAD2 mitotic arrest deficient-like 2 (yeast) protein-coding 3.243 2.347 nan 2.817 2.174 1.142 2.705 0.841 0.287 0.567 0.346 1.069 4.999 0.979 0.152 2.369 2.550 1.794 2.462 7.839 6.598 3.193 1.145 1.257 nan 0.949 nan 5.786 9.004 nan 0.935 0.980 1.329 1.278 1.485 1.738 2.882 0.741 0.627 2.454 1.368 0.351 0.263 2.705 1.069 1.261 0.493 0.376 0.374 1771 chr3 51994210 52004173 + 0 NA intron (NM_020418, intron 1 of 12) L2|LINE|L2 2259 NM_020418 57060 Hs.20930 NM_020418 ENSG00000090097 PCBP4 CBP|LIP4|MCG10 poly(rC) binding protein 4 protein-coding 2.772 1.633 nan 0.641 0.547 0.284 1.221 0.881 0.129 0.689 0.279 1.202 1.042 1.639 0.073 1.330 2.104 2.064 2.372 2.590 2.381 1.105 0.479 1.422 1.678 1.275 1.737 1.400 2.046 8.993 12.315 1.253 1.828 1.892 1.315 3.834 11.866 1.361 0.723 0.410 0.427 0.681 2.281 1.221 1.202 0.370 1.183 0.606 5.972 2482 chr9 14073980 14113259 + 0 NA intron (NM_001190738, intron 8 of 8) intron (NM_001190738, intron 8 of 8) 87182 NM_001282787 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding nan nan 1.335 0.566 0.563 0.323 0.467 0.488 0.102 0.454 0.446 0.512 1.668 0.069 0.114 0.209 0.120 2.374 4.086 0.705 0.854 0.929 0.365 0.221 0.157 6.068 7.679 1.417 1.834 0.370 0.181 0.232 0.350 1.209 1.136 0.306 0.799 1.374 0.885 3.903 0.161 0.252 0.156 0.467 0.512 0.015 0.131 0.091 0.063 349 chr10 19039663 19044889 + 0 NA Intergenic LTR9|LTR|ERV1 93963 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding nan 0.592 0.507 1.421 0.338 0.183 0.073 0.188 0.124 0.334 0.141 0.184 0.154 0.010 0.085 2.350 3.091 0.350 0.293 0.237 0.361 17.305 12.264 0.316 0.253 0.097 0.308 2.405 1.833 0.230 0.074 0.303 0.653 1.263 1.031 0.141 0.211 0.525 0.584 0.022 0.034 0.073 0.015 0.073 0.184 0.036 0.173 0.209 0.046 360 chr10 49792701 49818231 + 0 NA intron (NR_045675, intron 2 of 10) intron (NR_045675, intron 2 of 10) 7710 NR_144644 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 0.691 nan 5.126 0.430 0.660 0.351 0.075 0.092 0.075 0.093 0.094 2.307 2.109 0.068 0.079 0.591 0.867 0.227 0.322 1.253 1.022 2.462 0.443 0.773 0.805 0.202 0.383 1.331 1.488 0.589 0.610 0.177 0.227 0.563 0.684 0.165 0.236 0.502 0.415 1.102 0.219 0.175 0.402 0.075 2.307 0.130 0.020 0.027 0.088 1477 chr2 144066125 144084620 + 0 NA intron (NM_018460, intron 6 of 13) intron (NM_018460, intron 6 of 13) 188473 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 0.848 nan 0.844 0.085 0.238 0.110 0.138 0.154 0.121 0.103 0.107 0.159 0.348 0.059 0.054 0.295 0.177 0.167 0.288 0.185 0.270 0.159 0.079 0.207 0.216 3.800 3.603 0.283 0.325 0.426 0.181 0.124 0.180 0.041 0.030 0.371 0.565 0.251 0.312 0.048 0.024 0.015 0.078 0.138 0.159 0.087 0.027 0.037 0.054 246 chr1 175829808 175842624 + 0 NA Intergenic Intergenic -10263 NR_125964 101928751 NR_125964 ENSG00000224718 LINC01657 - long intergenic non-protein coding RNA 1657 ncRNA nan nan nan 0.055 0.227 0.176 0.268 0.111 0.042 0.106 0.143 0.075 0.355 0.051 0.053 5.438 6.500 7.775 7.004 nan 0.853 0.479 0.235 0.544 0.624 0.248 0.404 0.322 0.422 0.375 0.221 5.876 11.294 0.071 0.095 0.346 nan 0.713 0.672 0.025 0.194 0.045 0.099 0.268 0.075 0.112 0.063 7.302 0.124 1667 chr21 30384375 30398391 + 0 NA intron (NM_001320724, intron 1 of 5) CpG 302 NM_016940 10069 Hs.713123 NM_016940 ENSG00000156253 RWDD2B C21orf6|GL011 RWD domain containing 2B protein-coding 2.863 1.829 2.811 1.855 1.780 0.949 1.553 1.150 0.371 0.650 0.412 1.758 4.935 1.687 0.136 2.885 2.964 2.225 3.486 2.475 2.179 2.388 1.089 4.627 5.047 2.562 3.264 3.289 4.410 5.122 5.144 1.667 2.383 2.538 2.929 2.526 3.320 nan 1.587 1.069 1.646 0.381 0.694 1.553 1.758 0.536 1.144 0.728 0.965 2558 chr9 133530975 133548608 + 0 NA promoter-TSS (NM_021619) promoter-TSS (NM_021619) -190 NM_021619 59335 Hs.495311 NM_021619 ENSG00000130711 PRDM12 HSAN8|PFM9 PR/SET domain 12 protein-coding nan 0.533 0.726 0.286 0.252 0.181 0.349 0.091 0.091 0.090 0.060 0.299 0.640 0.088 0.062 0.182 0.123 0.207 0.244 14.275 12.127 nan 0.176 0.181 0.167 0.757 0.901 0.368 0.450 1.073 0.630 0.141 0.123 0.141 0.346 0.263 0.364 0.360 0.345 0.159 0.207 0.043 0.091 0.349 0.299 0.520 0.984 0.028 0.042 1809 chr3 133156102 133173162 + 0 NA intron (NR_135277, intron 2 of 3) MER2|DNA|TcMar-Tigger 9988 NR_135278 85003 Hs.659202 NR_135276 ENSG00000249993 BFSP2-AS1 - BFSP2 antisense RNA 1 ncRNA 0.938 nan nan 0.251 2.943 1.497 0.277 0.324 0.236 0.359 0.238 0.324 0.432 0.038 0.067 0.344 0.305 0.881 1.630 0.499 0.503 6.841 0.859 0.519 0.549 0.702 1.025 0.678 0.457 nan 0.318 0.153 0.308 0.791 1.338 0.280 0.583 1.436 0.657 0.214 0.177 0.084 0.167 0.277 0.324 0.131 0.317 0.040 0.053 2420 chr8 123791846 123795871 + 0 NA promoter-TSS (NM_014943) promoter-TSS (NM_014943) -43 NM_014943 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding nan nan 11.896 3.580 2.908 1.066 1.878 4.300 0.198 0.511 0.263 3.402 11.195 1.750 0.113 0.806 1.353 12.852 14.699 5.821 4.569 3.096 0.789 nan 15.605 3.270 4.750 2.918 4.618 2.973 4.407 1.460 2.868 3.875 4.328 0.587 1.888 2.265 1.397 2.554 0.401 0.668 1.202 1.878 3.402 2.203 1.438 0.738 0.584 78 chr1 33281044 33285700 + 0 NA 5' UTR (NM_003680, exon 1 of 13) intron (NM_001256121, intron 1 of 6) 253 NM_022753 64766 Hs.440880 NM_022753 ENSG00000116497 S100PBP S100PBPR S100P binding protein protein-coding 8.921 nan 8.684 17.261 7.123 4.195 7.565 4.885 0.276 6.662 2.962 15.029 15.277 8.791 0.248 7.313 8.027 8.186 11.632 16.129 15.346 nan 3.803 18.812 19.793 7.407 9.302 6.477 8.890 nan 8.910 6.179 9.562 5.777 5.912 7.265 12.115 4.192 nan 10.502 8.380 1.517 6.342 7.565 15.029 1.913 3.789 4.487 5.131 604 chr12 51413097 51427534 + 0 NA promoter-TSS (NM_001174127) promoter-TSS (NM_001174127) -116 NR_033422 4891 Hs.505545 NM_000617 ENSG00000110911 SLC11A2 AHMIO1|DCT1|DMT1|NRAMP2 solute carrier family 11 member 2 protein-coding nan 1.812 1.004 1.679 1.427 0.618 1.156 1.579 0.261 0.654 0.537 1.975 1.059 0.874 0.101 nan 1.855 2.632 3.990 3.124 nan 5.292 1.747 2.846 2.940 0.893 nan 1.776 nan 1.744 1.560 0.943 1.702 2.777 3.411 1.163 1.596 1.457 0.873 0.389 1.343 0.737 0.596 1.156 1.975 0.424 0.535 0.853 0.427 2211 chr7 1542735 1554178 + 0 NA Intergenic MLT1C|LTR|ERVL-MaLR -4438 NM_001080453 26173 Hs.532188 NM_001080453 ENSG00000164880 INTS1 INT1|NET28 integrator complex subunit 1 protein-coding 2.077 2.598 3.720 1.311 4.101 2.177 1.618 0.499 0.295 1.022 0.819 4.846 nan 1.862 0.239 1.875 2.103 1.096 nan 3.779 3.412 nan 0.696 1.471 1.584 0.882 1.431 nan 5.101 1.336 1.175 1.101 1.948 2.125 1.948 1.127 1.750 1.917 0.857 0.885 2.199 0.548 1.018 1.618 4.846 1.452 3.885 0.942 0.627 1605 chr20 32306099 32322561 + 0 NA Intergenic AluSx|SINE|Alu -5236 NM_032819 84905 Hs.516989 NM_032819 ENSG00000131061 ZNF341 - zinc finger protein 341 protein-coding 1.413 2.620 1.934 1.639 1.127 0.633 1.296 0.651 0.331 0.580 0.494 1.827 3.420 1.260 0.174 2.445 3.215 1.047 1.839 1.603 nan 4.430 1.494 1.716 1.755 1.319 1.829 2.399 2.899 2.472 2.461 1.211 1.991 2.510 2.436 1.222 nan 0.992 0.644 0.456 1.023 0.483 0.935 1.296 1.827 0.484 0.610 0.692 0.482 742 chr13 111765779 111776279 + 0 NA intron (NM_001113512, intron 1 of 17) intron (NM_001113512, intron 1 of 17) -3004 NR_046667 100874238 Hs.569218 NR_046667 ENSG00000235875 ARHGEF7-AS2 - ARHGEF7 antisense RNA 2 ncRNA 2.136 nan 3.346 1.851 1.312 0.823 3.015 0.203 0.061 0.446 0.303 5.649 2.670 0.145 0.088 0.600 0.392 2.095 1.486 5.933 5.100 1.103 0.409 0.205 0.284 0.048 0.067 4.708 6.312 0.398 0.247 0.930 1.566 0.471 0.584 0.148 0.212 0.659 0.400 1.288 1.839 0.173 1.978 3.015 5.649 0.351 1.639 0.370 0.065 2286 chr7 96624130 96662929 + 0 NA promoter-TSS (NR_015448) promoter-TSS (NR_015448) -152 NR_015448 285987 Hs.34969 NR_015448 DLX6-AS1 DLX6-AS|DLX6AS|Evf-2|NCRNA00212 DLX6 antisense RNA 1 ncRNA nan 2.602 nan 0.835 10.472 5.384 2.098 0.104 0.093 5.544 2.961 1.891 3.047 0.647 0.129 0.377 0.237 7.638 9.533 1.861 1.798 10.887 4.277 0.298 0.354 1.092 1.532 0.988 1.239 0.547 0.510 0.343 0.709 12.821 9.898 0.679 nan 5.932 3.462 0.918 0.703 3.639 2.582 2.098 1.891 0.168 0.543 0.161 0.385 260 chr1 197236692 197257631 + 0 NA intron (NR_047564, intron 1 of 11) MLT1I|LTR|ERVL-MaLR 9827 NM_201253 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs 1, cell polarity complex component protein-coding 1.156 nan 1.362 0.412 1.444 0.708 0.381 0.199 0.153 1.415 0.847 0.276 0.892 0.088 0.130 0.428 0.431 0.348 0.513 1.715 1.678 0.190 0.098 0.362 0.406 1.812 nan 0.501 0.592 1.104 0.810 0.247 0.517 2.897 3.474 1.904 3.605 1.332 0.930 0.026 0.354 0.344 0.046 0.381 0.276 0.018 0.355 0.468 0.797 49 chr1 21106891 21115620 + 0 NA intron (NM_016287, intron 1 of 12) AluY|SINE|Alu 1926 NM_016287 50809 Hs.142442 NM_016287 ENSG00000127483 HP1BP3 HP1-BP74|HP1BP74 heterochromatin protein 1 binding protein 3 protein-coding 4.695 2.603 nan 5.880 3.277 1.889 2.754 1.882 0.235 1.746 0.923 2.070 6.056 3.245 0.195 3.580 3.324 5.254 6.872 8.081 7.521 3.482 1.502 8.791 9.166 4.421 6.068 8.207 12.116 4.451 4.422 1.302 2.662 2.640 3.036 5.699 5.600 2.339 1.216 3.193 3.501 0.423 2.092 2.754 2.070 1.005 1.745 0.737 1.751 187 chr1 153957413 153964321 + 0 NA Intergenic AluY|SINE|Alu -2014 NR_073553 5872 Hs.151536 NM_002870 ENSG00000143545 RAB13 GIG4 RAB13, member RAS oncogene family protein-coding nan nan 2.640 2.634 2.220 1.209 2.785 2.167 0.435 1.943 1.259 2.973 8.964 2.924 0.180 2.921 3.121 5.149 7.321 5.211 nan 6.171 2.585 5.725 5.949 4.791 6.189 5.655 6.374 4.077 3.495 4.328 6.526 3.677 3.913 3.174 4.708 2.644 1.332 1.804 2.561 0.681 1.076 2.785 2.973 0.795 4.639 2.609 1.511 192 chr1 154940524 154951200 + 0 NA intron (NM_001130041, intron 1 of 12) AluSq2|SINE|Alu 1097 NM_001130041 6464 Hs.433795 NM_003029 ENSG00000160691 SHC1 SHC|SHCA SHC adaptor protein 1 protein-coding nan nan 2.730 2.447 2.477 1.219 3.348 6.511 1.092 1.792 0.823 2.443 12.108 5.095 0.185 4.678 6.236 5.568 9.362 5.117 nan 3.843 1.956 6.865 6.954 3.551 4.269 7.162 8.802 2.650 2.093 5.458 7.082 2.566 3.428 4.237 6.793 1.959 1.003 2.263 4.500 0.587 3.891 3.348 2.443 0.673 5.530 4.394 1.988 119 chr1 53994282 54014858 + 0 NA intron (NM_147193, intron 3 of 9) intron (NM_147193, intron 3 of 9) 79498 NM_033067 63948 Hs.131654 NM_033067 ENSG00000143006 DMRTB1 - DMRT like family B with proline rich C-terminal 1 protein-coding 1.469 0.700 0.996 0.094 0.248 0.116 0.553 0.715 0.155 0.121 0.109 0.087 0.472 0.084 0.092 0.497 0.660 0.424 0.836 0.793 0.759 0.726 0.289 0.469 0.488 3.030 3.454 0.275 0.482 1.727 2.337 0.408 0.413 0.276 0.336 0.710 nan 0.469 0.552 0.193 0.120 0.056 0.117 0.553 0.087 1.317 0.079 0.091 0.281 2448 chr8 144675182 144681285 + 0 NA intron (NM_001130055, intron 1 of 8) intron (NM_001130055, intron 1 of 8) 1350 NM_001330646 1936 Hs.333388 NM_001960 ENSG00000104529 EEF1D EF-1D|EF1D|FP1047 eukaryotic translation elongation factor 1 delta protein-coding 6.375 3.469 nan 5.087 4.882 2.796 3.273 2.012 0.345 1.158 0.657 6.267 10.640 1.923 0.055 3.591 3.520 3.839 6.661 nan 8.568 nan 2.583 8.984 10.060 1.850 2.957 3.910 6.360 3.792 4.487 3.181 4.600 4.572 3.851 4.171 3.431 3.122 1.559 5.204 3.420 0.751 2.024 3.273 6.267 0.847 3.985 0.956 1.175 34 chr1 10679386 10877944 + 0 NA intron (NM_017766, intron 2 of 15) intron (NM_017766, intron 2 of 15) 78068 NM_017766 54897 Hs.439894 NM_017766 ENSG00000130940 CASZ1 CAS11|CST|SRG|ZNF693|dJ734G22.1 castor zinc finger 1 protein-coding 1.429 1.263 nan 4.287 1.377 0.734 1.261 0.114 0.096 0.515 0.283 1.087 1.944 0.132 0.090 1.110 1.495 1.202 1.652 2.348 2.648 0.298 0.161 1.304 nan 0.423 nan 6.387 7.921 nan 1.193 1.140 1.650 0.444 0.470 1.273 3.090 1.346 0.775 1.796 1.080 0.139 0.378 1.261 1.087 0.583 0.972 1.172 1.657 782 chr14 38022972 38037648 + 0 NA Intergenic L2c|LINE|L2 34015 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 1.113 5.151 0.862 0.115 0.185 0.153 0.130 0.122 0.175 0.112 0.090 0.090 0.431 0.237 0.111 0.189 0.143 0.181 0.380 0.271 0.338 0.350 0.157 0.224 0.257 0.704 0.889 0.288 0.379 0.818 0.337 0.131 0.248 1.186 1.136 0.287 0.514 0.692 0.590 0.046 0.383 0.189 0.118 0.130 0.090 0.033 0.152 0.060 0.149 1290 chr19 34840752 34858112 + 0 NA Intergenic Intergenic -6213 NM_001289789 2821 Hs.466471 NM_000175 ENSG00000105220 GPI AMF|GNPI|NLK|PGI|PHI|SA-36|SA36 glucose-6-phosphate isomerase protein-coding 2.009 1.464 1.518 2.978 2.329 1.136 1.311 0.535 0.111 0.689 0.649 1.293 6.338 0.952 0.106 1.821 2.759 1.560 2.183 3.035 2.997 5.343 1.557 4.452 4.753 1.097 1.810 2.226 3.202 nan 3.233 1.574 2.842 1.230 1.554 1.604 2.521 2.531 1.291 1.556 1.863 0.296 0.656 1.311 1.293 0.481 1.368 1.072 1.338 1222 chr18 60842707 60885650 + 0 NA intron (NM_000633, intron 2 of 2) intron (NM_000633, intron 2 of 2) 122435 NM_000633 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2, apoptosis regulator protein-coding 0.866 1.105 1.727 2.034 1.475 0.855 0.445 0.126 0.068 0.541 0.240 0.851 4.893 0.063 0.072 0.976 1.162 2.122 2.220 1.581 1.720 3.889 1.449 1.629 nan 0.203 nan 5.161 4.826 0.357 0.167 1.750 2.625 1.028 1.885 0.131 0.188 5.050 2.814 3.213 1.186 0.258 0.385 0.445 0.851 0.106 1.159 2.252 0.069 2566 chr9 136547129 136581918 + 0 NA intron (NM_001134707, intron 13 of 20) AluSp|SINE|Alu 38956 NM_001134707 1757 Hs.198003 NM_007101 ENSG00000123453 SARDH BPR-2|DMGDHL1|SAR|SARD|SDH sarcosine dehydrogenase protein-coding nan 0.546 1.292 0.430 0.722 0.378 0.358 0.084 0.041 0.250 0.168 0.971 0.928 0.051 0.069 0.221 0.388 0.129 0.184 5.881 5.625 nan 0.240 0.143 0.141 0.065 0.151 2.166 2.544 3.798 5.468 0.242 0.265 0.282 0.304 0.372 0.858 0.884 0.550 2.494 0.707 0.082 0.050 0.358 0.971 0.268 0.753 0.051 0.139 1326 chr19 42652711 42665240 + 0 NA Intergenic Intergenic -21310 NR_036208 100422980 NR_036208 ENSG00000266226 MIR4323 - microRNA 4323 ncRNA 1.669 1.398 1.284 1.601 2.150 1.123 5.847 0.049 0.038 0.220 0.129 2.295 1.532 0.078 0.067 0.293 0.577 0.126 0.156 2.567 3.367 3.881 1.428 0.218 0.250 0.402 0.888 2.222 2.591 0.822 0.545 0.403 0.427 0.190 0.158 0.912 1.862 3.759 1.938 0.503 0.447 0.038 0.556 5.847 2.295 0.133 1.315 0.056 0.137 2570 chr9 138969725 139014923 + 0 NA Intergenic Intergenic -5193 NM_144653 138151 Hs.112895 NM_144653 ENSG00000148411 NACC2 BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB NACC family member 2 protein-coding nan 2.742 3.219 1.939 2.387 1.330 1.861 0.985 0.252 0.692 0.465 2.906 4.349 0.727 0.081 1.024 1.663 1.330 2.934 4.946 4.194 nan 0.659 0.421 0.405 0.789 1.121 4.980 5.897 2.451 2.800 1.007 1.743 1.924 1.832 0.518 0.604 1.128 0.660 6.409 2.298 0.677 0.507 1.861 2.906 0.627 1.993 0.872 0.180 2284 chr7 94247534 94265841 + 0 NA intron (NM_001346720, intron 4 of 11) intron (NM_001346720, intron 4 of 11) 28834 NM_001099401 8910 Hs.371199 NM_003919 ENSG00000127990 SGCE DYT11|ESG|epsilon-SG sarcoglycan epsilon protein-coding nan 0.868 nan 0.456 0.557 0.319 0.404 0.877 0.107 1.336 0.615 0.692 0.391 0.112 0.190 0.347 0.286 0.224 0.516 1.463 1.809 0.761 0.508 0.331 0.362 3.237 3.852 0.711 0.926 0.806 0.573 0.229 0.344 0.862 1.362 0.289 nan 2.471 1.625 0.051 0.214 0.178 0.105 0.404 0.692 0.064 0.144 0.081 0.151 826 chr14 89874947 89899304 + 0 NA TTS (NR_036500) TTS (NR_036500) 3427 NR_036500 400236 Hs.585207 NR_036500 ENSG00000258920 FOXN3-AS1 - FOXN3 antisense RNA 1 ncRNA 3.865 1.746 nan 0.766 1.227 0.601 0.842 3.122 0.324 0.684 0.345 1.238 3.377 1.622 0.121 0.829 1.078 1.656 2.439 2.703 2.133 1.880 0.729 2.042 1.932 1.806 2.879 3.255 4.719 2.111 2.139 0.989 2.542 3.577 3.563 0.687 0.834 nan 1.359 1.580 0.708 1.036 2.239 0.842 1.238 0.292 0.797 2.114 0.135 1247 chr19 1847034 1865587 + 0 NA intron (NM_031918, intron 1 of 1) intron (NM_031918, intron 1 of 1) 7254 NM_031918 83855 Hs.136280 NM_031918 ENSG00000129911 KLF16 BTEB4|DRRF|NSLP2 Kruppel like factor 16 protein-coding 3.480 1.437 3.661 1.864 2.523 1.200 3.622 1.000 0.190 0.734 0.359 2.557 3.063 1.983 0.078 3.831 4.482 2.441 3.805 2.593 2.757 2.449 1.401 5.554 5.350 1.858 2.922 2.469 nan 7.259 8.314 1.540 2.306 3.360 3.444 3.581 4.820 1.900 1.092 1.631 2.284 1.072 0.679 3.622 2.557 1.542 1.359 0.909 2.267 354 chr10 25236457 25243810 + 0 NA intron (NM_020200, intron 1 of 8) L2a|LINE|L2 1440 NM_001282786 56952 Hs.405619 NM_020200 ENSG00000099256 PRTFDC1 HHGP phosphoribosyl transferase domain containing 1 protein-coding 2.703 2.349 3.531 1.934 4.075 2.705 2.589 5.360 0.733 1.021 0.687 4.165 1.611 1.947 0.113 0.591 0.894 4.077 7.594 4.774 4.381 12.345 6.229 1.336 1.453 4.274 5.096 2.973 5.211 2.461 3.159 1.412 1.288 2.010 1.644 1.728 2.350 1.773 0.943 1.975 0.871 0.298 2.459 2.589 4.165 0.688 1.354 0.470 1.361 2069 chr6 15087090 15092240 + 0 NA Intergenic Intergenic -156541 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 1.956 nan 2.867 0.441 0.660 0.341 0.435 0.160 0.156 0.091 0.142 0.812 0.274 0.022 0.083 0.506 0.268 0.287 0.693 0.879 0.917 1.364 0.393 0.363 0.355 0.699 1.027 8.047 7.129 0.719 0.539 0.174 0.568 2.722 2.292 0.599 1.996 1.523 1.004 3.752 4.088 0.517 6.029 0.435 0.812 0.076 0.059 0.172 0.311 1618 chr20 44598490 44603202 + 0 NA promoter-TSS (NM_022095) promoter-TSS (NM_022095) -13 NM_022095 63925 Hs.174193 NM_022095 ENSG00000198026 ZNF335 MCPH10|NIF-1|NIF1|NIF2 zinc finger protein 335 protein-coding nan nan 3.372 5.660 5.713 3.422 5.156 3.850 0.379 1.975 0.977 4.266 8.453 5.175 0.128 11.491 10.483 6.250 9.196 7.369 8.799 12.505 9.798 11.288 12.414 4.854 5.553 7.962 11.289 nan 9.023 8.886 10.200 3.983 5.057 7.935 6.360 2.038 1.204 2.159 4.142 0.789 3.339 5.156 4.266 1.532 2.057 2.266 2.782 2150 chr6 52970186 52990001 + 0 NA Intergenic MER34A|LTR|ERV1 33531 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing homolog 1 protein-coding 1.508 1.795 nan 0.440 0.334 0.210 0.227 0.166 0.057 0.367 0.125 0.520 0.465 0.077 0.150 0.470 0.447 5.623 3.953 0.367 0.419 4.490 1.210 0.401 0.402 0.196 0.452 3.381 3.145 0.465 0.286 0.245 0.429 3.674 4.097 0.458 1.008 1.512 0.912 0.049 0.086 1.207 0.181 0.227 0.520 0.025 0.632 0.183 0.189 693 chr13 20354206 20357988 + 0 NA intron (NR_044998, intron 1 of 7) intron (NR_044998, intron 1 of 7) 1062 NR_044998 55269 Hs.213198 NM_001042414 ENSG00000121390 PSPC1 PSP1 paraspeckle component 1 protein-coding 4.924 3.655 4.137 5.119 3.057 1.569 2.272 5.945 0.889 1.327 0.767 5.401 6.685 3.673 0.130 8.690 7.085 7.942 nan 15.778 14.696 5.036 2.586 7.633 7.635 4.508 5.934 4.307 8.305 9.217 8.784 5.937 11.578 2.439 2.937 14.717 11.709 4.278 2.321 1.821 3.613 0.604 4.336 2.272 5.401 0.329 2.339 4.195 4.617 2401 chr8 102497287 102527982 + 0 NA intron (NM_001330593, intron 1 of 15) intron (NM_001330593, intron 1 of 15) 7966 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|TFCP2L3 grainyhead like transcription factor 2 protein-coding 1.484 nan nan 2.120 0.792 0.390 0.262 0.349 0.089 0.404 0.250 3.290 5.443 0.025 0.074 2.156 2.485 3.518 5.704 2.826 2.448 nan 0.728 5.605 5.976 1.031 nan 7.897 nan nan 0.216 2.439 3.895 0.467 0.568 0.327 nan 1.186 0.806 2.120 0.145 0.075 0.761 0.262 3.290 0.038 0.515 1.278 0.225 1845 chr3 176618415 176640353 + 0 NA Intergenic Intergenic -94595 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 1.410 2.453 1.196 2.468 1.065 0.628 0.418 0.558 0.154 0.703 0.312 0.792 3.736 0.047 0.143 0.452 0.287 2.165 5.868 0.873 0.827 3.290 1.671 0.285 0.305 0.735 0.988 4.378 3.894 0.652 0.250 0.188 0.296 1.812 1.997 0.411 0.783 1.382 0.747 1.891 0.469 0.390 0.188 0.418 0.792 0.084 0.717 0.056 0.112 1360 chr19 49651407 49662125 + 0 NA exon (NM_002152, exon 1 of 6) exon (NM_002152, exon 1 of 6) 1915 NM_002152 3270 Hs.436885 NM_002152 ENSG00000130528 HRC - histidine rich calcium binding protein protein-coding 2.783 1.964 3.395 0.960 1.854 0.991 0.632 0.378 0.120 0.612 0.292 1.271 4.560 1.932 0.102 1.380 2.246 1.236 2.047 2.440 2.400 1.677 0.750 3.960 4.019 1.234 1.852 1.595 2.070 3.832 4.080 1.242 1.998 1.026 0.992 2.867 3.255 1.434 0.999 1.466 5.052 0.233 0.282 0.632 1.271 0.930 0.870 1.315 1.092 828 chr14 95621318 95625381 + 0 NA promoter-TSS (NR_015415) promoter-TSS (NR_015415) 410 NM_177438 23405 Hs.87889 NM_030621 ENSG00000100697 DICER1 DCR1|Dicer|Dicer1e|HERNA|K12H4.8-LIKE|MNG1|RMSE2 dicer 1, ribonuclease III protein-coding 9.838 4.083 nan 7.893 6.298 3.596 8.788 4.234 0.592 2.549 1.460 8.085 12.628 3.681 0.092 6.917 7.423 7.341 11.948 13.323 13.997 5.000 3.114 22.167 23.227 4.849 5.819 7.755 14.753 12.287 13.630 7.269 13.916 7.023 6.201 6.318 4.619 nan 1.956 5.739 6.891 1.336 4.386 8.788 8.085 1.398 1.848 4.239 1.788 2097 chr6 28848321 28866587 + 0 NA Intergenic Intergenic -6853 NR_104117 414760 Hs.211005 NR_104117 ENSG00000224157 HCG14 dJ111M5.4 HLA complex group 14 (non-protein coding) ncRNA 2.198 1.529 nan 1.807 1.782 0.870 1.252 0.943 0.434 0.729 0.404 1.504 nan 1.634 0.154 1.687 2.088 0.789 nan 2.619 2.536 nan 1.712 3.458 3.615 1.796 1.954 2.328 3.488 2.870 2.485 1.060 1.379 2.330 2.453 2.549 3.128 1.594 0.993 0.870 1.162 0.280 0.717 1.252 1.504 0.198 0.757 0.715 0.825 734 chr13 100552744 100569043 + 0 NA non-coding (NR_104592, exon 10 of 10) non-coding (NR_104592, exon 10 of 10) 48526 NR_120421 101927437 Hs.619936 NR_120421 LOC101927437 - uncharacterized LOC101927437 ncRNA 1.046 3.403 2.546 3.048 0.331 0.118 2.720 0.166 0.078 1.300 1.096 0.205 2.260 0.081 0.061 0.768 0.527 0.369 0.344 0.881 1.147 4.440 1.117 0.165 0.247 0.868 nan 1.487 1.383 0.586 0.306 0.225 0.321 3.558 4.185 0.239 nan 1.447 0.578 0.297 1.352 1.146 0.204 2.720 0.205 0.336 1.023 0.018 0.046 276 chr1 204025628 204079942 + 0 NA intron (NM_005686, intron 1 of 13) intron (NM_005686, intron 1 of 13) 10539 NM_005686 9580 Hs.201671 NM_005686 ENSG00000143842 SOX13 ICA12|Sox-13 SRY-box 13 protein-coding 1.419 2.229 1.415 2.616 3.325 1.755 1.435 0.665 0.237 0.717 0.338 2.867 2.952 0.183 0.105 2.955 4.103 4.546 4.226 2.668 2.800 2.977 0.806 nan nan 0.289 0.565 2.829 2.863 0.506 0.367 1.344 2.363 0.976 0.722 0.401 0.828 1.511 0.809 0.936 2.302 0.120 0.423 1.435 2.867 0.134 0.144 1.391 0.102 2348 chr8 37551760 37562670 + 0 NA 3' UTR (NM_025069, exon 2 of 2) 3' UTR (NM_025069, exon 2 of 2) 3946 NM_025069 80139 Hs.288042 NM_025069 ENSG00000183779 ZNF703 NLZ1|ZEPPO1|ZNF503L|ZPO1 zinc finger protein 703 protein-coding 2.241 2.187 nan 3.472 1.636 0.911 1.729 1.523 0.169 0.189 0.195 3.776 4.694 0.936 0.102 0.280 0.389 1.743 3.345 4.213 3.727 0.502 0.197 0.249 0.292 0.865 1.113 1.821 2.276 1.744 1.878 0.322 0.860 3.732 3.152 0.628 1.697 1.510 0.777 0.676 1.745 1.828 0.452 1.729 3.776 0.401 2.141 0.100 0.500 1664 chr21 27103339 27110119 + 0 NA promoter-TSS (NM_001197297) promoter-TSS (NM_001197297) -529 NM_001197297 2551 Hs.473470 NM_002040 ENSG00000154727 GABPA E4TF1-60|E4TF1A|NFT2|NRF2|NRF2A|RCH04A07 GA binding protein transcription factor alpha subunit protein-coding 4.965 2.581 4.927 4.585 3.643 2.344 3.419 2.020 0.355 1.436 0.784 4.485 10.017 3.147 0.091 7.600 6.420 5.799 7.440 7.398 7.879 5.064 3.052 11.951 12.598 6.095 7.310 6.506 9.300 12.029 10.530 4.427 7.418 5.137 5.836 6.766 6.486 4.361 2.514 2.446 4.029 0.929 2.388 3.419 4.485 1.179 2.391 2.220 2.615 2452 chr8 145012264 145032883 + 0 NA intron (NM_000445, intron 2 of 32) intron (NM_000445, intron 2 of 32) 2471 NM_201380 5339 Hs.434248 NM_000445 ENSG00000178209 PLEC EBS1|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|PCN|PLEC1|PLEC1b|PLTN plectin protein-coding 3.581 1.602 nan 2.287 1.468 0.723 2.656 1.750 0.460 0.314 0.152 1.598 4.980 1.019 0.058 1.917 3.378 1.288 2.290 nan 2.984 nan 0.868 2.555 2.788 0.750 1.380 2.630 4.245 0.988 1.120 1.282 1.867 1.022 0.921 1.539 2.121 1.025 0.630 1.739 1.452 0.227 0.566 2.656 1.598 0.524 1.521 0.977 0.382 2449 chr8 144690863 144701874 + 0 NA exon (NM_001317783, exon 7 of 11) exon (NM_001317783, exon 7 of 11) 3281 NM_001317783 7264 Hs.404119 NM_003313 ENSG00000104522 TSTA3 FX|P35B|SDR4E1 tissue specific transplantation antigen P35B protein-coding 3.820 1.687 nan 2.745 2.083 1.038 1.340 0.971 0.257 0.741 0.389 2.582 5.962 1.170 0.072 1.777 2.049 1.750 2.807 nan 3.694 nan 0.954 4.658 4.878 1.708 2.531 2.198 2.937 2.374 2.862 1.298 1.979 1.804 1.857 2.650 2.951 1.887 1.035 1.650 2.670 0.406 0.678 1.340 2.582 1.075 3.007 0.486 0.880 690 chr12 133286274 133288686 + 0 NA promoter-TSS (NM_138575) promoter-TSS (NM_138575) 87 NM_001170543 192111 Hs.102558 NM_138575 ENSG00000247077 PGAM5 BXLBV68 PGAM family member 5, mitochondrial serine/threonine protein phosphatase protein-coding 3.526 3.676 3.825 5.598 6.196 4.159 4.196 1.336 0.342 3.894 2.193 6.262 11.267 5.919 0.113 4.631 5.325 6.803 10.273 8.002 7.918 8.369 3.392 10.675 10.411 4.382 6.348 9.860 15.138 4.819 5.754 4.630 9.696 6.216 6.400 5.793 6.195 5.343 2.983 2.934 4.723 0.869 14.113 4.196 6.262 1.286 5.643 1.214 1.437 843 chr14 105210843 105220649 + 0 NA Intergenic MER54A|LTR|ERVL -3724 NM_006427 10572 Hs.112058 NM_006427 ENSG00000184990 SIVA1 CD27BP|SIVA|Siva-1|Siva-2 SIVA1 apoptosis inducing factor protein-coding 4.506 1.765 2.704 4.585 1.909 0.929 1.853 1.041 0.412 1.221 1.098 2.222 4.131 1.361 0.101 1.952 1.653 2.033 2.974 4.577 4.857 3.953 1.900 1.376 1.424 1.756 2.568 3.301 5.388 3.480 3.476 1.275 2.044 2.317 2.425 1.531 1.357 4.742 2.166 2.229 1.925 0.388 0.991 1.853 2.222 0.867 3.046 0.314 0.392 1005 chr17 4881587 4892286 + 0 NA intron (NM_015099, intron 3 of 22) AluSx1|SINE|Alu 3729 NM_001171167 23125 Hs.632242 NM_015099 ENSG00000108509 CAMTA2 - calmodulin binding transcription activator 2 protein-coding 1.831 1.189 1.513 0.534 1.209 0.688 0.621 0.557 0.161 0.513 0.311 1.758 1.563 0.903 0.120 5.925 7.484 5.469 3.012 2.942 2.808 2.566 0.776 6.844 7.274 1.269 1.754 1.710 2.023 1.425 1.398 1.892 2.992 0.637 0.489 1.462 2.802 0.899 0.580 1.528 1.106 0.115 0.726 0.621 1.758 0.738 1.561 0.970 0.707 2113 chr6 34553025 34572432 + 0 NA intron (NM_024294, intron 4 of 4) AluJr|SINE|Alu -38618 NM_001252294 25803 Hs.485158 NM_012391 ENSG00000124664 SPDEF PDEF|bA375E1.3 SAM pointed domain containing ETS transcription factor protein-coding nan 1.563 nan 1.969 0.439 0.271 0.488 0.292 0.108 0.774 0.383 1.279 2.874 0.107 0.117 0.544 0.625 0.396 nan nan 1.447 2.382 0.512 0.515 0.565 1.917 2.647 3.717 3.954 1.440 0.990 0.257 0.447 4.138 4.381 0.683 1.344 2.391 1.384 0.083 0.696 1.647 0.462 0.488 1.279 0.819 0.588 0.057 0.326 1196 chr18 47415093 47439514 + 0 NA intron (NM_001080467, intron 21 of 39) MIRb|SINE|MIR 86910 NR_003003 677769 NR_003003 ENSG00000267322 SCARNA17 U91 small Cajal body-specific RNA 17 ncRNA nan 1.192 1.067 1.032 0.277 0.164 0.688 0.042 0.059 0.475 0.249 0.164 1.489 0.031 0.099 0.501 0.553 0.199 0.318 0.696 0.886 1.126 0.288 0.190 0.185 0.257 0.384 0.751 0.878 0.375 0.193 0.236 0.287 1.899 2.760 0.186 nan 3.825 2.216 2.480 0.345 0.487 0.417 0.688 0.164 0.113 0.095 0.032 0.040 2604 chrX 153616842 153628906 + 0 NA Intergenic Intergenic -3532 NM_001256577 6134 Hs.534404 NM_006013 ENSG00000147403 RPL10 AUTSX5|DXS648|DXS648E|L10|NOV|QM ribosomal protein L10 protein-coding 3.215 2.447 4.007 2.510 4.707 2.368 3.476 0.996 0.187 0.846 0.419 2.387 6.426 1.693 0.092 4.576 5.291 2.830 4.347 5.843 4.858 4.725 2.551 8.301 8.348 1.776 2.770 4.878 6.843 5.099 6.135 4.361 5.957 3.515 2.831 4.939 4.413 1.798 1.084 2.047 3.997 0.567 1.739 3.476 2.387 0.718 1.328 2.075 1.452 186 chr1 153933991 153941791 + 0 NA intron (NM_001271960, intron 1 of 4) AluSg|SINE|Alu -1774 NM_001271961 27173 Hs.7854 NM_014437 ENSG00000143570 SLC39A1 ZIP1|ZIRTL solute carrier family 39 member 1 protein-coding 7.173 4.718 7.865 4.489 3.974 2.062 5.106 2.949 0.523 3.491 1.736 4.316 17.815 6.827 0.184 6.939 6.672 8.175 12.981 10.410 nan 6.112 2.379 7.618 8.092 5.538 6.716 7.220 11.920 5.477 4.790 7.337 12.040 5.701 6.978 6.271 8.655 3.897 1.682 4.209 7.639 1.635 3.232 5.106 4.316 1.305 5.206 6.039 2.589 2104 chr6 31701493 31710091 + 0 NA promoter-TSS (NM_001287593) promoter-TSS (NM_001287593) -697 NM_001287593 1192 Hs.414565 NM_001288 ENSG00000213719 CLIC1 G6|NCC27 chloride intracellular channel 1 protein-coding nan 5.462 nan 7.791 8.144 3.749 5.777 4.108 0.672 3.001 1.144 7.835 16.876 4.067 0.180 5.591 5.536 5.078 7.901 nan 6.093 9.026 4.282 9.615 10.593 3.998 5.361 18.043 25.343 1.019 0.733 2.120 3.071 6.504 6.807 3.546 6.920 3.431 1.915 4.691 3.652 2.066 1.043 5.777 7.835 0.837 4.011 1.977 2.300 1318 chr19 41103693 41121639 + 0 NA intron (NM_001042545, intron 6 of 30) AluSz|SINE|Alu 5389 NM_001042545 8425 Hs.466766 NM_003573 ENSG00000090006 LTBP4 ARCL1C|LTBP-4|LTBP4L|LTBP4S latent transforming growth factor beta binding protein 4 protein-coding 1.194 0.986 0.949 0.624 1.474 0.834 1.064 0.501 0.159 0.395 0.229 0.554 9.453 1.957 0.100 0.274 0.367 0.677 0.994 1.015 0.883 1.064 0.252 0.537 0.563 1.135 1.603 2.591 3.543 1.182 0.998 0.623 0.690 0.283 0.276 1.076 2.054 1.269 0.716 0.637 1.478 0.021 0.259 1.064 0.554 0.953 1.696 0.432 0.605 1276 chr19 18153090 18161380 + 0 NA Intergenic L2a|LINE|L2 38258 NM_001286826 27106 Hs.515249 NM_015683 ENSG00000105643 ARRDC2 CLONE24945|PP2703 arrestin domain containing 2 protein-coding 4.587 1.650 2.449 0.464 0.411 0.251 0.298 0.272 0.370 0.209 0.272 0.231 0.521 0.104 0.106 0.264 0.188 0.308 0.772 0.850 0.832 0.674 0.241 0.230 0.198 3.286 4.436 2.987 4.089 8.250 7.998 0.250 0.209 1.011 1.728 4.071 9.341 2.036 1.073 0.448 0.278 0.324 0.095 0.298 0.231 2.035 1.007 0.060 4.688 174 chr1 150479544 150489550 + 0 NA intron (NM_004425, intron 7 of 9) intron (NM_004425, intron 7 of 9) -3686 NR_051960 100874054 Hs.576460 NR_051960 ENSG00000228126 FALEC FAL1|LINC00568|ncRNA-a1 focally amplified long non-coding RNA in epithelial cancer ncRNA nan nan 1.747 0.451 0.941 0.497 0.838 0.764 0.344 1.279 0.952 1.533 3.563 0.930 0.099 1.039 1.422 1.488 2.115 2.525 nan 1.994 0.537 1.128 1.139 1.338 1.916 2.227 2.640 1.061 1.053 1.602 2.817 1.337 1.416 1.596 2.397 1.859 0.877 0.424 1.215 0.321 0.500 0.838 1.533 0.262 4.108 1.740 0.613 1621 chr20 47892144 47900592 + 0 NA promoter-TSS (NR_003695) promoter-TSS (NR_003695) -482 NR_003695 100113393 Hs.711216 NR_003695 ENSG00000222365 SNORD12B - small nucleolar RNA, C/D box 12B snoRNA nan nan 2.918 3.866 3.261 1.528 3.119 2.847 0.366 1.722 0.778 3.488 8.084 4.051 0.107 8.524 7.344 3.741 5.272 5.119 4.599 6.477 2.837 7.094 7.351 3.093 4.429 5.751 6.327 nan 6.950 3.280 5.590 1.266 1.628 11.559 8.116 3.357 1.465 1.946 2.590 0.372 3.233 3.119 3.488 1.063 1.849 1.789 3.235 1648 chr20 60840625 60883587 + 0 NA intron (NM_001278649, intron 11 of 12) intron (NM_001278649, intron 11 of 12) -15846 NM_001281438 11047 Hs.90107 NM_007002 ENSG00000130706 ADRM1 ARM-1|ARM1|GP110 adhesion regulating molecule 1 protein-coding 1.171 1.330 1.377 0.488 0.684 0.358 0.497 0.446 0.165 0.336 0.205 0.537 8.536 0.436 0.111 1.448 nan 0.722 0.868 1.004 0.948 1.048 0.471 2.464 2.478 0.679 1.170 1.989 2.461 0.762 0.707 0.599 0.943 0.242 0.227 0.779 0.883 0.807 0.511 1.189 3.711 0.084 0.348 0.497 0.537 0.188 0.571 0.210 0.215 2158 chr6 87860600 87867389 + 0 NA Intergenic Intergenic -1275 NM_015021 23036 Hs.485892 NM_015021 ENSG00000188994 ZNF292 Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3 zinc finger protein 292 protein-coding 6.332 3.628 nan 6.424 7.945 4.276 5.770 1.571 0.070 2.724 1.955 7.766 12.154 5.260 0.180 9.596 10.298 3.886 5.371 12.216 11.344 9.267 4.600 10.501 11.092 3.878 4.458 6.192 10.558 11.259 12.887 6.248 10.282 8.752 9.238 3.943 3.251 3.021 1.432 3.687 4.520 2.335 4.392 5.770 7.766 0.629 3.743 4.021 1.369 971 chr16 51177752 51187658 + 0 NA intron (NM_002968, intron 1 of 2) intron (NM_002968, intron 1 of 2) 1803 NM_001127892 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding nan nan nan 5.637 1.540 0.834 4.383 0.076 0.064 2.840 1.209 1.758 4.512 0.099 0.068 0.304 0.215 0.216 0.283 3.342 3.049 1.430 0.479 2.211 2.189 0.212 nan nan nan nan 0.110 0.231 0.327 0.114 0.058 5.940 9.141 nan 1.393 0.500 0.116 0.010 3.331 4.383 1.758 0.038 0.010 0.121 2.194 1855 chr3 179369518 179374442 + 0 NA intron (NM_003940, intron 1 of 20) AluSx1|SINE|Alu 1047 NM_003940 8975 Hs.175322 NM_003940 ENSG00000058056 USP13 ISOT3|IsoT-3 ubiquitin specific peptidase 13 (isopeptidase T-3) protein-coding 5.746 3.237 4.363 3.814 2.588 1.609 3.301 2.986 0.588 2.998 1.860 3.648 10.794 1.656 0.083 3.545 3.995 4.843 5.963 6.636 5.722 12.893 4.848 4.053 4.076 3.872 5.241 4.051 7.173 6.578 7.613 1.744 4.203 4.582 4.519 7.875 6.618 2.648 1.567 2.025 3.523 1.273 2.083 3.301 3.648 0.791 1.151 0.950 3.381 673 chr12 122005772 122021335 + 0 NA intron (NM_032590, intron 3 of 22) intron (NM_032590, intron 3 of 22) 4811 NM_001005366 84678 Hs.524800 NM_032590 ENSG00000089094 KDM2B CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2 lysine demethylase 2B protein-coding 1.750 1.371 1.456 0.926 2.774 1.351 1.278 0.785 0.105 0.671 0.455 1.275 2.322 1.713 0.108 0.915 1.610 2.353 2.625 4.221 3.422 nan 0.638 1.604 1.796 1.752 2.369 2.085 3.537 1.560 1.410 1.475 2.255 1.144 0.970 1.029 1.821 2.432 1.409 3.971 9.140 0.296 0.561 1.278 1.275 0.571 0.996 1.108 0.542 892 chr15 76782507 76813957 + 0 NA intron (NM_001145923, intron 23 of 31) L1MA3|LINE|L1 -80756 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 1.160 1.040 1.392 0.173 0.348 0.179 0.193 0.159 0.128 0.144 0.183 0.110 0.318 0.042 0.073 0.393 0.295 0.233 0.282 0.356 0.372 0.826 0.159 0.148 0.150 0.575 0.851 0.189 0.236 2.705 1.777 0.162 0.257 0.870 1.095 2.112 5.840 0.812 0.497 0.043 0.062 0.364 0.613 0.193 0.110 0.193 0.023 0.057 2.062 334 chr10 1765201 1782959 + 0 NA intron (NM_018702, intron 1 of 9) intron (NM_018702, intron 1 of 9) 5590 NM_018702 105 Hs.586663 NM_018702 ENSG00000185736 ADARB2 ADAR3|RED2 adenosine deaminase, RNA specific B2 (inactive) protein-coding 0.867 0.511 1.019 0.421 1.018 0.357 0.410 0.105 0.109 1.637 1.034 3.462 1.167 0.024 0.064 2.630 3.621 0.129 0.218 2.472 2.625 0.220 0.148 0.429 0.431 0.125 0.199 1.733 2.976 0.209 0.149 3.116 6.829 0.036 0.033 0.284 0.400 0.662 0.532 0.163 0.526 0.022 0.366 0.410 3.462 0.286 0.813 4.168 0.046 1974 chr5 51323074 51344310 + 0 NA Intergenic Intergenic -654526 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA nan nan 0.760 1.473 5.632 2.933 5.926 0.094 0.053 1.968 1.510 2.871 2.524 0.086 0.123 0.172 0.091 0.291 0.282 6.049 7.783 nan 1.696 0.076 0.065 0.615 0.745 0.755 0.943 nan 0.230 0.066 0.060 1.985 2.199 0.231 0.392 4.354 1.534 6.844 3.136 0.714 0.205 5.926 2.871 0.005 0.036 0.042 0.053 668 chr12 118402856 118408877 + 0 NA intron (NM_173598, intron 1 of 19) intron (NM_173598, intron 1 of 19) 162 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding nan nan 1.514 2.802 2.584 1.627 2.630 0.124 0.054 2.204 1.162 5.581 6.719 0.850 0.085 2.152 3.289 2.020 2.761 nan 11.797 nan 2.335 3.737 3.938 0.120 0.214 8.193 nan 1.870 2.447 1.576 3.162 2.097 1.322 0.163 0.210 nan 2.063 3.160 7.629 0.360 3.251 2.630 5.581 0.924 1.505 0.931 0.021 800 chr14 61222442 61235863 + 0 NA intron (NM_002431, intron 1 of 7) AluSx1|SINE|Alu 27693 NM_002431 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1, CDK activating kinase assembly factor protein-coding nan nan 0.988 3.459 5.843 2.856 1.256 0.749 0.132 0.433 0.233 3.714 0.645 0.089 0.134 0.324 0.252 0.549 0.804 3.523 4.488 4.283 2.514 nan 0.675 0.461 0.729 2.752 nan 0.765 0.332 0.239 0.414 1.622 1.605 0.195 0.444 0.501 0.368 0.955 1.039 0.135 2.047 1.256 3.714 0.088 0.015 0.077 0.119 2536 chr9 123677507 123699888 + 0 NA intron (NM_001190945, intron 2 of 8) intron (NM_001190945, intron 2 of 8) 476 NM_005658 7185 Hs.531251 NM_005658 ENSG00000056558 TRAF1 EBI6|MGC:10353 TNF receptor associated factor 1 protein-coding nan nan 1.335 0.743 0.722 0.393 0.297 0.798 0.130 0.375 0.203 0.616 nan 0.388 0.082 0.360 0.571 0.346 0.762 1.055 1.368 0.720 0.283 0.644 0.742 1.127 nan 1.334 1.514 1.441 1.230 0.362 0.518 0.594 0.524 1.778 5.741 nan 0.799 1.005 0.244 0.103 0.138 0.297 0.616 0.249 0.880 0.071 2.301 1111 chr17 70301089 70308463 + 0 NA Intergenic Intergenic -34176 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 1.053 0.865 0.585 0.727 0.719 0.304 0.275 0.132 0.087 0.149 0.112 0.455 0.559 0.059 0.084 2.420 3.832 8.652 2.491 0.435 0.430 0.566 0.263 1.280 1.479 nan 1.012 0.698 0.809 0.498 0.318 1.082 1.800 0.156 0.219 0.242 0.189 nan 0.713 0.016 0.054 0.030 0.127 0.275 0.455 0.054 0.081 0.728 0.034 2 chr1 1092222 1108141 + 0 NA Intergenic CpG -2303 NR_029639 406984 NR_029639 ENSG00000207730 MIR200B MIRN200B|mir-200b microRNA 200b ncRNA 1.503 nan 3.575 5.521 5.196 2.443 0.178 0.122 0.102 1.680 0.813 2.887 4.149 0.087 0.065 4.986 5.762 2.867 4.578 10.897 9.445 2.974 1.148 16.390 16.368 0.168 nan nan 8.027 nan 0.175 3.410 5.783 1.332 1.146 0.138 0.250 0.856 0.652 3.349 7.749 0.275 11.284 0.178 2.887 0.825 0.070 2.510 0.015 671 chr12 119870677 119887335 + 0 NA intron (NM_178499, intron 2 of 13) intron (NM_178499, intron 2 of 13) 106489 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding nan nan 0.500 0.068 0.718 0.304 0.780 0.068 0.077 0.281 0.124 0.293 0.900 0.051 0.097 0.240 0.187 0.175 0.130 nan nan nan 0.668 0.124 0.097 0.509 0.720 nan nan 0.549 0.300 0.152 0.132 0.165 0.277 0.228 0.272 nan 1.799 0.030 0.150 0.029 0.052 0.780 0.293 0.161 1.414 0.006 0.081 286 chr1 212777795 212783932 + 0 NA intron (NM_001030287, intron 1 of 3) CpG -1107 NM_001674 467 Hs.460 NM_001674 ENSG00000162772 ATF3 - activating transcription factor 3 protein-coding 4.154 4.802 4.912 4.277 3.984 2.219 2.706 2.365 0.078 4.838 1.352 4.912 nan 2.050 0.137 1.446 1.903 7.987 14.383 4.114 3.217 nan 2.692 13.029 13.480 1.314 nan 2.668 6.308 1.552 2.148 0.879 1.426 2.363 2.719 1.765 4.740 1.603 1.308 1.616 3.015 0.281 1.683 2.706 4.912 0.699 1.786 0.342 1.232 2470 chr9 2282645 2304488 + 0 NA Intergenic Intergenic 135110 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 1.109 3.917 2.897 2.800 1.670 0.756 1.996 0.122 0.066 2.900 1.052 5.406 8.131 0.039 0.089 0.194 0.128 0.440 0.821 4.537 4.841 8.542 4.350 0.608 0.589 1.002 1.644 6.108 6.824 0.654 0.533 0.197 0.236 3.693 2.937 0.235 nan 6.041 3.619 2.563 2.656 0.579 0.516 1.996 5.406 0.620 0.912 0.149 0.046 531 chr11 126867903 126875456 + 0 NA promoter-TSS (NM_001161707) promoter-TSS (NM_001161707) -913 NM_032531 84623 Hs.376015 NM_032531 ENSG00000149571 KIRREL3 KIRRE|MRD4|NEPH2|PRO4502 kin of IRRE like 3 (Drosophila) protein-coding 0.674 2.931 0.863 1.156 2.293 1.101 3.664 0.019 0.021 0.578 0.284 1.569 12.128 0.086 0.100 0.744 0.585 0.416 0.472 3.655 3.656 4.904 1.054 0.116 0.110 0.157 0.291 1.645 2.106 1.213 1.355 0.918 1.426 4.218 2.614 0.322 nan 2.373 1.213 0.437 1.101 1.392 0.264 3.664 1.569 0.139 0.041 0.118 0.387 969 chr16 49777364 49790807 + 0 NA intron (NM_001271620, intron 2 of 7) intron (NM_001271620, intron 2 of 7) 72564 NM_015069 23090 Hs.443715 NM_015069 ENSG00000102935 ZNF423 Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ zinc finger protein 423 protein-coding 0.836 1.087 0.881 0.059 0.307 0.168 4.241 0.079 0.059 0.023 0.073 0.054 0.171 0.041 0.063 0.210 0.200 0.063 0.081 0.295 0.363 0.765 0.279 0.135 0.132 0.547 0.978 0.209 0.340 1.089 1.209 0.144 0.157 0.604 0.540 0.322 0.555 1.079 0.802 0.008 0.086 0.127 0.065 4.241 0.054 0.988 0.053 0.031 0.064 1815 chr3 134817912 134830052 + 0 NA intron (NM_004441, intron 3 of 15) intron (NM_004441, intron 3 of 15) 309883 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 1.128 nan nan 0.630 1.946 0.896 0.924 0.085 0.155 0.284 0.179 0.108 0.477 0.018 0.071 0.389 0.186 0.141 0.297 0.644 0.734 8.001 1.842 0.179 0.166 0.267 0.462 1.782 1.636 nan 0.615 0.821 0.984 0.835 0.975 0.287 0.415 0.197 0.367 0.298 0.366 0.165 0.125 0.924 0.108 0.423 0.050 0.446 0.072 871 chr15 61306893 61313919 + 0 NA intron (NM_134261, intron 1 of 10) MamRep434|DNA|TcMar-Tigger 211096 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 0.609 0.898 nan 0.049 0.327 0.250 0.251 0.084 0.155 0.083 0.082 0.369 0.046 0.071 1.181 1.534 7.422 1.926 0.325 0.288 nan 0.047 0.177 0.134 0.106 0.195 0.280 0.270 0.545 0.306 0.395 0.588 0.070 0.080 0.239 0.504 0.345 0.298 0.016 0.012 0.034 0.251 0.082 0.046 0.082 0.125 0.122 43 chr1 16156970 16185903 + 0 NA intron (NR_024279, intron 1 of 1) intron (NR_024279, intron 1 of 1) -2923 NM_015001 23013 Hs.744843 NM_015001 ENSG00000065526 SPEN HIAA0929|MINT|RBM15C|SHARP spen family transcriptional repressor protein-coding 4.248 2.816 nan 10.724 4.061 2.064 2.797 1.741 0.278 2.315 1.185 2.068 6.349 3.700 0.173 4.409 3.807 3.614 5.470 7.312 6.159 3.867 1.982 8.211 nan 3.676 nan 8.784 12.731 nan 5.038 2.441 3.878 2.358 3.094 4.535 4.968 2.250 1.225 4.993 3.241 0.651 1.900 2.797 2.068 0.920 1.672 2.208 1.913 2085 chr6 19971624 20040025 + 0 NA Intergenic Intergenic 168223 NM_001546 3400 Hs.519601 NM_001546 ENSG00000172201 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, HLH protein protein-coding 1.334 nan 1.037 0.293 2.906 1.520 0.375 0.111 0.099 0.618 0.314 3.514 1.059 0.054 0.090 0.387 0.277 0.296 0.564 2.556 2.850 6.385 2.077 0.213 0.239 0.455 0.634 0.376 0.405 0.608 0.439 0.182 0.232 0.916 0.949 0.750 1.791 2.055 1.038 0.574 0.130 0.157 0.719 0.375 3.514 0.287 0.101 0.033 0.457 611 chr12 54365968 54433269 + 0 NA Intergenic CpG -3272 NM_022658 3224 Hs.664500 NM_022658 ENSG00000037965 HOXC8 HOX3|HOX3A homeobox C8 protein-coding nan 1.432 1.299 0.085 0.347 0.189 0.186 1.100 0.128 0.221 0.157 0.263 1.696 2.075 0.069 nan 13.381 5.793 8.152 0.517 nan 0.250 0.129 4.553 4.767 1.461 nan 1.110 nan 0.997 0.737 7.441 14.167 1.716 1.790 1.463 2.885 0.549 0.489 1.240 4.574 0.635 0.016 0.186 0.263 0.457 0.673 6.895 0.881 1107 chr17 69155470 69179810 + 0 NA intron (NR_104152, intron 2 of 3) intron (NR_104152, intron 2 of 3) 30680 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility candidate 17 (non-protein coding) ncRNA 1.116 nan 0.557 0.418 2.688 1.356 0.347 0.309 0.146 1.130 0.781 3.653 2.607 0.040 0.138 0.637 0.482 0.945 1.485 1.057 1.565 3.706 2.913 0.241 0.203 1.295 nan 0.554 0.696 0.449 0.217 0.682 1.369 1.928 2.588 0.134 0.189 2.276 0.965 0.408 2.140 0.430 0.093 0.347 3.653 0.103 0.138 1.834 0.031 38 chr1 11104821 11134911 + 0 NA exon (NM_003132, exon 1 of 8) exon (NM_003132, exon 1 of 8) 225 NM_003132 6723 Hs.76244 NM_003132 ENSG00000116649 SRM PAPT|SPDSY|SPS1|SRML1 spermidine synthase protein-coding 1.330 1.341 nan 5.853 0.903 0.486 1.558 0.347 0.101 0.537 0.242 0.457 2.938 0.498 0.131 0.811 0.954 0.562 0.833 5.209 5.046 2.297 0.621 0.955 nan 0.913 nan 6.085 6.489 nan 1.194 0.448 0.627 1.184 1.528 1.131 1.876 1.696 0.933 1.503 1.110 0.494 0.075 1.558 0.457 0.188 0.574 0.124 0.571 906 chr15 99189139 99195403 + 0 NA non-coding (NR_126453, exon 1 of 1) non-coding (NR_126453, exon 1 of 1) 503 NM_001291858 3480 Hs.643120 NM_000875 ENSG00000140443 IGF1R CD221|IGFIR|IGFR|JTK13 insulin like growth factor 1 receptor protein-coding nan nan nan 2.146 0.913 0.486 1.610 0.333 2.003 0.876 2.081 5.879 5.198 0.134 4.822 6.032 0.538 0.598 3.168 1.967 nan 0.220 6.000 5.668 1.907 3.252 1.080 1.309 nan 12.749 2.423 6.193 2.326 2.017 8.266 nan 0.686 0.619 0.409 4.044 0.560 1.598 1.610 2.081 1.519 2.293 1.661 2.270 1055 chr17 36852968 36892477 + 0 NA exon (NM_005937, exon 10 of 20) exon (NM_005937, exon 10 of 20) -3222 NR_039879 100616153 NR_039879 ENSG00000273627 MIR4726 - microRNA 4726 ncRNA nan 1.760 1.632 1.004 2.354 1.433 1.035 0.784 0.208 1.270 0.697 1.641 2.748 0.952 0.087 2.213 2.945 1.713 2.228 nan 2.313 2.332 0.757 5.194 5.476 1.016 1.538 3.764 4.647 nan 2.031 1.003 1.672 1.306 1.274 1.560 2.695 1.836 1.043 1.539 1.540 0.242 0.296 1.035 1.641 0.507 1.542 0.668 1.157 787 chr14 50315399 50337018 + 0 NA Intergenic AluSp|SINE|Alu -6287 NM_004713 9147 Hs.655964 NM_004713 ENSG00000165525 NEMF NY-CO-1|SDCCAG1 nuclear export mediator factor protein-coding nan nan 1.946 1.996 1.315 0.778 1.313 1.420 0.202 0.493 0.397 1.119 4.127 1.733 0.146 1.585 1.776 2.060 2.975 2.444 2.139 3.553 1.323 4.211 4.467 1.786 2.107 2.559 3.440 3.443 3.030 1.124 2.051 2.832 3.227 1.418 2.806 nan 1.125 1.030 1.252 0.490 0.643 1.313 1.119 0.329 0.982 0.686 0.659 2402 chr8 102613377 102622015 + 0 NA intron (NM_001330593, intron 8 of 15) intron (NM_001330593, intron 8 of 15) 113028 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|TFCP2L3 grainyhead like transcription factor 2 protein-coding 1.325 nan nan 1.023 1.434 0.927 1.067 0.262 0.130 0.181 0.133 2.382 2.120 0.091 0.055 0.722 1.069 5.585 10.443 3.047 3.081 5.570 2.548 0.587 0.606 0.709 nan 1.921 nan nan 0.170 0.971 1.904 3.679 3.625 0.150 nan 1.804 1.058 0.401 0.445 0.996 0.222 1.067 2.382 0.877 0.470 0.128 580 chr12 14535745 14572410 + 0 NA intron (NM_181352, intron 1 of 14) intron (NM_181352, intron 1 of 14) 16079 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 1.125 0.815 1.008 1.038 0.605 0.332 0.754 0.211 0.062 0.581 0.589 3.172 1.495 0.442 0.145 0.615 0.796 4.807 5.611 nan 1.542 1.577 0.610 5.397 5.474 1.299 1.576 1.184 1.500 1.822 1.744 1.238 2.093 0.742 0.875 1.146 1.752 0.116 0.079 1.745 1.032 0.140 0.568 0.754 3.172 0.164 0.291 3.075 0.125 2532 chr9 116168695 116174255 + 0 NA intron (NM_017443, intron 4 of 4) AluSx|SINE|Alu -1449 NM_001278629 257169 Hs.632691 NM_152786 ENSG00000157653 C9orf43 - chromosome 9 open reading frame 43 protein-coding 3.778 2.484 nan 6.520 4.070 1.904 4.487 2.157 0.462 1.721 1.093 4.213 6.963 2.488 0.156 3.318 2.952 5.881 8.605 7.231 6.892 4.916 1.912 11.601 12.414 2.056 2.611 7.781 nan 11.763 11.605 2.151 3.633 6.194 6.038 5.218 7.308 nan 1.900 3.196 2.185 1.015 1.660 4.487 4.213 1.526 2.470 1.270 2.086 1879 chr4 50249 55477 + 0 NA promoter-TSS (NM_001039127) promoter-TSS (NM_001039127) -316 NM_001286052 152687 Hs.709469 NM_182524 ENSG00000272602 ZNF595 - zinc finger protein 595 protein-coding 3.250 2.168 3.216 1.638 2.126 1.013 1.110 1.822 0.589 2.748 1.578 4.189 0.752 2.028 0.332 4.257 3.946 9.839 14.322 1.919 2.146 nan 1.504 2.709 2.509 3.600 5.365 2.056 3.203 1.734 0.850 1.444 2.087 0.296 0.535 1.019 1.268 nan 2.059 0.510 1.284 0.108 0.531 1.110 4.189 0.489 3.050 0.516 0.280 532 chr11 126918742 126952463 + 0 NA Intergenic AluSg|SINE|Alu -1295 NR_120578 101929473 Hs.737523 NR_120578 ENSG00000255087 LOC101929473 - uncharacterized LOC101929473 ncRNA 0.563 1.691 0.872 0.440 1.198 0.604 1.043 0.033 0.014 0.343 0.181 0.430 0.851 0.029 0.107 0.665 0.497 0.167 0.248 0.671 0.794 4.154 0.986 0.117 0.130 0.219 0.285 1.378 1.173 0.543 0.455 0.723 0.826 1.592 1.711 0.200 nan 2.701 1.565 0.110 0.363 0.360 0.091 1.043 0.430 0.044 0.051 0.258 0.098 74 chr1 32698663 32709176 + 0 NA intron (NR_026850, intron 3 of 6) AluSz6|SINE|Alu 3392 NR_026850 339483 Hs.471067 NR_026850 MTMR9LP MTMR9L myotubularin related protein 9-like, pseudogene pseudo 3.617 nan 2.083 4.808 3.016 1.739 1.392 0.278 0.253 0.865 0.556 4.091 5.852 0.807 0.127 2.305 3.497 1.640 2.352 5.739 4.074 nan 1.148 3.276 3.307 0.641 1.113 2.836 4.550 nan 1.064 1.091 1.451 0.753 0.568 0.383 0.847 2.457 nan 5.849 3.357 0.191 1.759 1.392 4.091 0.596 2.065 0.693 0.244 47 chr1 17989012 18015365 + 0 NA intron (NM_001319838, intron 15 of 17) intron (NM_001319838, intron 15 of 17) 57380 NM_001328124 55160 Hs.443460 NM_018125 ENSG00000074964 ARHGEF10L GrinchGEF Rho guanine nucleotide exchange factor 10 like protein-coding 0.966 0.722 nan 0.037 0.402 0.214 0.439 0.123 0.049 0.117 0.109 0.176 1.158 0.082 0.100 1.746 2.836 0.806 0.517 0.844 0.756 0.427 0.157 0.556 nan 0.927 nan 0.288 0.615 nan 1.739 0.682 1.281 0.071 0.088 0.330 0.560 0.923 0.631 2.580 0.208 0.011 0.142 0.439 0.176 0.360 0.062 1.119 0.070 647 chr12 98907034 98915546 + 0 NA intron (NM_001032283, intron 1 of 8) intron (NM_001032283, intron 1 of 8) -1286 NR_027157 100128191 Hs.594042 NR_027157 ENSG00000257167 TMPO-AS1 - TMPO antisense RNA 1 ncRNA 6.279 5.118 4.436 4.980 7.024 3.674 4.388 4.863 1.575 3.474 2.474 6.378 14.291 5.863 0.221 4.976 5.397 6.129 8.608 13.121 11.729 7.901 4.139 12.624 12.871 6.015 nan 6.772 nan 8.871 9.823 3.619 7.576 8.412 8.681 8.039 5.539 3.877 2.192 6.701 6.226 2.541 3.429 4.388 6.378 1.349 1.926 2.045 3.108 1798 chr3 127253762 127267271 + 0 NA Intergenic Intergenic -3893 NR_125397 101927149 Hs.407798 NR_125397 ENSG00000239921 LINC01471 - long intergenic non-protein coding RNA 1471 ncRNA 1.772 nan 1.760 1.303 1.820 1.065 1.594 0.178 0.060 3.586 1.220 2.787 3.257 0.176 0.053 0.451 0.667 0.329 0.387 4.941 5.321 2.407 0.670 0.554 0.597 0.906 nan 1.041 1.936 2.855 3.404 0.892 0.931 0.871 0.545 2.759 4.256 1.697 0.891 1.496 1.313 0.156 0.223 1.594 2.787 0.332 0.707 0.191 1.451 22 chr1 7392464 7403011 + 0 NA intron (NM_015215, intron 5 of 22) intron (NM_015215, intron 5 of 22) -433592 NM_004781 9341 Hs.66708 NM_004781 ENSG00000049245 VAMP3 CEB vesicle associated membrane protein 3 protein-coding 1.175 nan 1.405 2.419 1.413 0.638 0.480 0.163 0.065 0.685 0.328 1.166 8.591 0.031 0.079 1.079 1.837 0.255 0.631 2.748 2.467 2.157 0.557 0.227 0.254 0.249 nan nan 6.468 nan 0.701 1.822 2.389 1.144 1.389 0.380 0.740 1.533 1.082 2.249 1.233 0.190 1.068 0.480 1.166 0.644 1.465 1.768 0.175 2363 chr8 53294380 53321035 + 0 NA intron (NM_014682, intron 2 of 25) intron (NM_014682, intron 2 of 25) 14732 NM_014682 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18, C2H2C-type zinc finger protein-coding 1.237 nan 0.902 2.593 1.098 0.584 0.202 0.085 0.054 0.838 0.308 2.619 0.879 0.048 0.100 0.348 0.295 0.431 0.472 1.932 2.354 2.875 1.051 0.472 0.455 0.584 nan 1.635 1.132 0.459 0.284 0.224 0.331 0.345 0.415 0.217 0.344 3.137 1.681 0.022 0.354 0.035 0.036 0.202 2.619 0.095 1.540 0.092 0.079 2273 chr7 73151516 73162594 + 0 NA Intergenic Intergenic -3858 NM_148913 83451 Hs.647045 NM_148912 ENSG00000106077 ABHD11 PP1226|WBSCR21 abhydrolase domain containing 11 protein-coding nan 3.321 2.518 6.032 8.899 4.872 4.692 1.187 0.305 4.256 2.248 11.005 13.682 1.385 0.204 5.696 7.550 7.249 nan 11.138 10.512 9.644 6.472 3.197 3.413 0.892 nan 14.179 19.436 2.556 2.898 5.132 6.507 7.024 6.855 1.871 2.675 4.669 2.397 11.291 13.362 2.321 2.753 4.692 11.005 1.507 1.444 4.203 0.472 1427 chr2 33135498 33141763 + 0 NA intron (NR_027099, intron 5 of 5) L2a|LINE|L2 -13564 NR_027097 100271832 Hs.743603 NR_027097 LOC100271832 - uncharacterized LOC100271832 ncRNA 3.179 nan nan 0.084 0.208 0.205 0.349 0.118 0.215 0.049 0.119 0.133 0.207 0.068 0.096 4.718 4.622 3.527 4.000 3.737 3.547 2.553 3.411 3.743 nan 3.060 3.054 3.176 2.501 nan 3.253 4.279 3.570 2.647 2.828 3.821 3.026 4.243 3.440 0.027 0.115 0.122 0.026 0.349 0.133 0.030 0.080 0.048 0.098 817 chr14 75715538 75728216 + 0 NA Intergenic Intergenic -23604 NM_005252 2353 Hs.25647 NM_005252 ENSG00000170345 FOS AP-1|C-FOS|p55 Fos proto-oncogene, AP-1 transcription factor subunit protein-coding 4.050 3.132 2.049 2.293 2.380 1.237 1.802 0.891 0.329 0.814 0.339 2.108 3.840 0.669 0.130 0.932 2.714 1.276 2.366 3.268 2.795 1.747 1.732 3.991 4.316 1.734 2.251 3.700 nan 3.330 3.621 1.084 2.363 5.221 4.297 2.689 2.461 4.475 nan 1.497 2.286 0.894 1.089 1.802 2.108 0.691 0.863 1.201 0.400 1837 chr3 168507136 168514447 + 0 NA intron (NR_021485, intron 7 of 15) intron (NR_021485, intron 7 of 15) -108942 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 1.038 1.158 0.820 0.322 0.346 0.219 0.123 0.162 0.044 1.180 0.474 0.049 0.151 0.091 0.438 0.342 0.188 0.269 0.866 0.790 12.665 5.444 0.227 0.211 0.516 0.721 nan 1.100 nan 0.411 0.119 0.226 0.596 0.498 0.311 0.441 0.987 0.951 0.046 0.096 0.091 0.087 0.123 0.049 0.040 0.292 0.055 0.100 561 chr12 7068276 7083091 + 0 NA TTS (NR_003010) TTS (NR_003010) 1086 NR_003010 677777 Hs.689636 NR_003010 ENSG00000238795 SCARNA12 U89 small Cajal body-specific RNA 12 ncRNA 3.219 nan nan 11.413 5.688 2.999 1.986 0.329 0.130 4.280 1.817 4.916 10.184 1.848 0.184 3.000 3.163 5.529 8.279 nan 8.912 17.019 7.002 13.684 14.440 2.458 3.386 6.012 8.622 3.105 3.313 3.440 5.450 8.434 8.891 3.894 nan 2.340 1.267 5.407 4.745 1.655 4.663 1.986 4.916 12.876 1.275 2.279 1.179 2563 chr9 135842554 135860075 + 0 NA intron (NM_004188, intron 3 of 10) intron (NM_004188, intron 3 of 10) -2784 NM_001135031 8328 Hs.553160 NM_004188 ENSG00000165702 GFI1B BDPLT17|ZNF163B growth factor independent 1B transcriptional repressor protein-coding nan 0.568 0.546 0.232 0.305 0.228 0.213 0.123 0.211 0.115 0.160 0.144 0.463 0.075 0.067 3.072 5.291 6.633 3.027 0.516 0.589 nan 0.117 1.680 1.502 0.135 0.255 0.392 0.525 0.509 0.215 3.294 5.055 0.114 0.136 0.148 0.184 0.377 0.407 0.206 0.081 0.016 0.022 0.213 0.144 0.061 0.069 4.935 0.046 547 chr12 6601640 6604442 + 0 NA promoter-TSS (NM_016497) promoter-TSS (NM_016497) -257 NM_014865 9918 Hs.5719 NM_014865 ENSG00000010292 NCAPD2 CAP-D2|CNAP1|hCAP-D2 non-SMC condensin I complex subunit D2 protein-coding 7.386 nan 5.447 14.779 5.623 3.178 4.750 2.322 0.171 3.661 2.352 8.755 16.540 8.145 0.182 4.847 3.919 10.038 14.385 18.770 15.419 18.767 10.492 21.020 21.498 8.442 10.982 7.135 10.612 10.880 10.702 4.114 5.795 10.770 15.284 9.132 11.178 3.152 1.340 6.922 6.667 2.368 6.064 4.750 8.755 7.484 1.982 2.807 3.910 1066 chr17 38247445 38281501 + 0 NA Intergenic Intergenic -7495 NM_021724 9572 Hs.724 NM_021724 ENSG00000126368 NR1D1 EAR1|THRA1|THRAL|ear-1|hRev nuclear receptor subfamily 1 group D member 1 protein-coding nan 2.352 1.826 1.143 3.284 1.878 1.938 3.419 0.630 1.289 0.689 2.290 3.591 1.311 0.105 1.819 2.074 1.624 2.592 nan 2.723 2.751 0.912 4.898 5.055 1.779 2.526 3.734 4.805 nan 2.763 1.370 1.972 0.898 1.040 1.899 3.833 1.681 0.986 1.504 2.588 0.284 1.080 1.938 2.290 0.642 1.538 0.865 1.342 2580 chrX 10463193 10488992 + 0 NA intron (NM_001193281, intron 2 of 2) intron (NM_001193281, intron 2 of 2) 59551 NM_001193279 4281 Hs.27695 NM_000381 ENSG00000101871 MID1 BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY midline 1 protein-coding 0.643 nan 0.659 0.109 0.160 0.118 0.084 0.948 0.106 0.079 0.189 0.065 0.197 0.223 0.070 0.104 0.099 1.472 4.777 0.193 0.243 0.207 0.087 0.386 0.433 0.128 0.173 0.330 0.276 0.326 0.202 0.120 0.201 0.049 0.057 0.226 0.429 0.223 0.258 0.009 0.062 0.022 0.025 0.084 0.065 0.008 0.016 0.041 0.104 1750 chr3 9436730 9448337 + 0 NA intron (NM_001292043, intron 1 of 24) intron (NM_001292043, intron 1 of 24) 3149 NM_001080517 55209 Hs.288164 NM_018187 ENSG00000168137 SETD5 - SET domain containing 5 protein-coding 3.551 3.057 4.440 2.490 3.076 1.409 1.651 2.660 0.265 1.978 1.062 1.844 7.103 3.319 0.098 3.038 3.726 5.085 7.795 5.245 4.965 5.486 2.549 11.558 11.396 2.750 2.996 4.742 8.356 11.318 9.352 3.389 5.049 3.735 5.398 5.475 6.655 1.933 1.057 2.496 2.408 0.901 2.834 1.651 1.844 0.753 1.773 1.988 1.813 2315 chr7 122016498 122028658 + 0 NA intron (NM_001167940, intron 24 of 29) intron (NM_001167940, intron 24 of 29) -78013 NM_001160264 389549 Hs.553970 NM_001024613 ENSG00000128610 FEZF1 FEZ|HH22|ZNF312B FEZ family zinc finger 1 protein-coding 1.228 0.713 1.014 0.283 1.062 0.553 0.624 0.101 0.053 0.172 0.299 0.554 0.360 0.053 0.124 6.191 4.826 5.719 2.306 0.842 0.840 1.857 0.307 0.335 0.351 0.157 0.197 0.407 0.408 0.826 0.528 0.336 0.609 1.200 1.780 1.136 2.492 0.654 0.654 0.009 0.227 0.140 0.830 0.624 0.554 1.018 0.066 0.162 0.264 2125 chr6 41421113 41428474 + 0 NA Intergenic Intergenic -45389 NR_120347 103106903 Hs.563396 NR_120347 ENSG00000226917 LINC01276 - long intergenic non-protein coding RNA 1276 ncRNA 1.829 1.232 1.405 1.574 2.575 1.155 1.002 0.131 0.111 0.957 0.322 6.815 1.640 0.059 0.078 0.705 0.957 0.288 0.585 4.798 4.952 5.936 3.742 0.397 0.397 0.112 0.264 7.037 8.421 0.507 0.282 0.506 1.191 3.127 1.798 0.202 0.575 3.211 2.021 0.173 0.701 0.786 0.151 1.002 6.815 0.074 0.844 0.633 0.055 301 chr1 226611820 226626438 + 0 NA Intergenic AluJb|SINE|Alu -23328 NM_001618 142 Hs.177766 NM_001618 ENSG00000143799 PARP1 ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PPOL|pADPRT-1 poly(ADP-ribose) polymerase 1 protein-coding 1.435 nan 1.657 0.316 1.651 0.774 0.689 0.109 0.055 0.355 0.230 0.496 1.279 0.049 0.108 0.467 0.442 0.394 0.561 1.151 nan 1.906 0.431 0.415 0.487 0.460 0.830 0.906 0.956 1.040 0.947 0.136 0.155 1.183 0.916 0.433 0.611 1.243 0.751 1.656 0.367 0.485 4.993 0.689 0.496 0.172 0.093 0.020 0.184 478 chr11 67210095 67221559 + 0 NA Intergenic Intergenic -4059 NM_001300896 57010 Hs.143036 NM_145200 ENSG00000175544 CABP4 CRSD|CSNB2B calcium binding protein 4 protein-coding nan 1.670 2.178 2.244 1.583 0.866 0.894 0.612 0.199 0.668 0.394 2.455 2.591 1.050 0.140 1.637 2.486 1.243 1.581 2.174 2.242 4.176 1.437 1.862 2.034 0.982 1.478 4.283 4.436 1.045 0.720 1.153 1.259 0.832 0.814 0.642 0.870 1.607 0.901 0.783 0.971 0.141 0.579 0.894 2.455 0.619 2.701 0.397 0.420 2419 chr8 123685594 123716205 + 0 NA intron (NR_126348, intron 2 of 3) intron (NR_126348, intron 2 of 3) 5446 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA nan nan nan 0.277 0.305 0.142 0.321 0.274 0.100 0.098 0.130 0.078 nan 0.039 0.077 0.267 0.185 0.411 1.279 0.569 0.629 1.133 0.303 nan nan 1.699 2.047 0.619 0.511 1.295 1.333 0.200 0.335 1.828 2.872 0.406 0.728 1.158 0.673 0.457 0.134 0.648 0.044 0.321 0.078 0.818 0.829 0.055 0.198 798 chr14 61080488 61133626 + 0 NA TTS (NR_126480) TTS (NR_126480) 1123 NR_126480 104548971 NR_126480 SALRNA1 SAL-RNA1|XLOC_023166 senescence associated long non-coding RNA 1 ncRNA nan nan 1.718 2.484 1.859 1.057 2.643 0.825 0.190 0.219 0.195 4.532 2.441 0.436 0.132 0.744 0.791 0.777 1.092 8.036 6.987 0.858 0.260 nan 1.877 0.377 0.678 3.375 nan 1.471 1.342 1.004 2.000 0.915 0.806 0.245 0.565 0.988 0.715 4.756 5.948 0.133 3.475 2.643 4.532 0.348 0.444 1.030 0.097 235 chr1 166939856 166951647 + 0 NA intron (NM_001286378, intron 1 of 12) L2c|LINE|L2 932 NM_001286378 84944 Hs.651245 NM_032858 ENSG00000143194 MAEL CT128|SPATA35 maelstrom spermatogenic transposon silencer protein-coding 0.874 nan 1.262 0.424 2.414 1.099 1.283 0.121 0.190 0.526 0.425 1.277 1.701 0.128 0.089 0.486 0.492 0.568 0.719 6.713 nan 5.988 1.507 0.198 0.192 0.736 1.253 0.843 nan 0.401 0.248 0.517 0.851 0.348 0.278 0.257 0.619 3.307 1.654 0.085 2.526 0.049 0.082 1.283 1.277 0.066 0.063 0.193 0.096 820 chr14 81420784 81443808 + 0 NA intron (NM_001018036, intron 1 of 8) intron (NM_001018036, intron 1 of 8) 10427 NM_000369 7253 Hs.160411 NM_000369 ENSG00000165409 TSHR CHNG1|LGR3|hTSHR-I thyroid stimulating hormone receptor protein-coding nan 0.774 1.638 0.142 1.224 0.655 0.290 2.037 0.293 0.265 0.243 0.140 0.675 0.099 0.113 0.293 0.337 0.240 0.376 1.266 1.220 0.191 0.071 0.586 0.572 0.887 1.457 0.440 0.479 2.822 2.349 0.156 0.259 4.374 6.239 0.715 1.473 2.182 1.336 0.387 0.298 1.824 0.180 0.290 0.140 1.276 0.096 0.047 0.257 954 chr16 30536853 30548145 + 0 NA 3' UTR (NM_001305018, exon 3 of 3) 3' UTR (NM_001305018, exon 3 of 3) 3792 NM_001305018 65988 Hs.592032 NM_023931 ENSG00000169955 ZNF747 - zinc finger protein 747 protein-coding 4.438 2.892 3.968 4.932 4.490 2.109 3.818 1.172 0.170 1.371 0.512 4.175 10.854 1.940 0.106 4.935 4.646 3.812 6.506 4.525 3.809 7.501 3.152 8.582 8.899 3.221 4.257 9.084 12.999 4.965 5.804 3.476 4.508 5.714 5.302 3.931 3.725 3.094 1.587 3.015 2.403 1.230 2.319 3.818 4.175 1.591 3.025 1.795 1.162 479 chr11 67230597 67237678 + 0 NA intron (NR_073412, intron 4 of 6) intron (NR_073412, intron 4 of 6) 2611 NR_073413 80194 Hs.288761 NM_025124 ENSG00000172663 TMEM134 - transmembrane protein 134 protein-coding nan 1.766 3.696 3.506 2.673 1.245 2.404 0.561 0.160 1.165 0.486 4.007 4.940 2.220 0.085 4.246 5.927 2.900 3.893 6.380 5.962 7.191 2.840 5.030 5.056 1.596 2.324 4.450 5.057 1.762 1.718 2.098 3.090 1.654 1.411 1.009 1.280 2.109 0.907 1.382 2.364 0.308 1.663 2.404 4.007 1.443 4.729 1.023 0.583 2038 chr5 154970885 154991694 + 0 NA Intergenic T-rich|Low_complexity|Low_complexity 587974 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 1.097 nan 1.128 0.131 0.212 0.170 0.074 0.083 0.046 0.068 0.108 0.212 0.301 0.053 0.094 0.274 0.168 0.162 0.239 0.261 0.311 0.148 0.075 0.080 0.047 0.326 0.479 0.524 0.513 1.440 1.108 0.108 0.168 0.421 0.397 1.221 4.721 0.572 0.514 0.059 0.112 0.087 0.125 0.074 0.212 0.093 0.038 0.024 3.360 2378 chr8 73722008 73743956 + 0 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) 88702 NR_110656 101926908 Hs.680588 NR_110656 ENSG00000253726 LOC101926908 - uncharacterized LOC101926908 ncRNA 1.967 1.464 1.617 2.826 2.319 1.180 0.732 0.132 0.139 1.321 0.503 6.516 2.336 0.020 0.089 0.580 0.814 0.341 0.435 6.107 6.199 6.044 3.502 0.673 0.597 0.754 1.223 3.453 5.264 0.850 0.727 0.429 0.728 4.076 4.595 1.009 3.101 4.689 2.172 2.331 3.171 1.169 0.228 0.732 6.516 0.098 1.393 0.437 0.985 1227 chr18 72953939 72990170 + 0 NA intron (NM_001308210, intron 1 of 1) (TGAA)n|Simple_repeat|Simple_repeat 48570 NM_001308210 10194 Hs.284217 NM_005786 ENSG00000179981 TSHZ1 CAA|NY-CO-33|SDCCAG33|TSH1 teashirt zinc finger homeobox 1 protein-coding nan nan 0.901 0.550 1.491 0.872 0.858 0.252 0.049 1.432 0.839 2.388 0.679 0.101 0.101 1.724 1.807 1.361 2.186 2.158 nan 2.932 0.931 0.586 0.591 0.290 0.414 2.272 nan 6.901 6.696 1.503 2.255 3.514 3.812 0.189 0.251 1.928 1.132 0.215 0.397 0.814 0.933 0.858 2.388 0.085 0.590 1.135 0.123 1410 chr2 16230316 16240467 + 0 NA Intergenic L2a|LINE|L2 44842 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 (non-protein coding) ncRNA 0.704 0.436 2.473 0.437 0.191 0.031 0.101 0.044 0.049 0.061 0.098 0.023 0.411 0.034 0.082 0.320 0.455 0.230 0.351 0.290 0.237 0.601 0.158 0.144 0.187 0.105 0.170 0.300 nan 0.554 0.313 15.353 20.399 0.025 0.045 0.464 nan 0.184 0.279 1.296 0.190 0.009 0.039 0.101 0.023 0.161 15.962 0.110 1251 chr19 4057816 4068230 + 0 NA intron (NM_015898, intron 1 of 2) intron (NM_015898, intron 1 of 2) 2504 NM_001317990 51341 Hs.591384 NM_015898 ENSG00000178951 ZBTB7A FBI-1|FBI1|LRF|TIP21|ZBTB7|ZNF857A|pokemon zinc finger and BTB domain containing 7A protein-coding 3.054 1.881 7.757 1.989 2.151 1.285 2.301 1.503 0.217 1.974 0.852 3.852 4.643 2.995 0.080 2.211 3.460 2.203 2.944 3.314 2.750 1.582 0.742 4.990 4.778 1.839 2.625 5.773 nan 4.718 5.130 1.005 1.994 2.193 1.644 2.532 3.898 1.588 0.787 0.902 4.566 0.843 1.373 2.301 3.852 0.878 1.930 0.964 1.582 2188 chr6 151770667 151778616 + 0 NA intron (NM_001286562, intron 1 of 3) intron (NM_001286562, intron 1 of 3) 1248 NM_001286562 79624 Hs.15929 NM_024573 ENSG00000146476 ARMT1 C6orf211 acidic residue methyltransferase 1 protein-coding nan 2.926 2.190 2.484 1.625 1.070 2.107 1.270 0.204 0.768 0.307 1.702 3.655 1.777 0.166 3.069 3.198 2.827 3.703 2.825 nan 5.389 1.819 3.424 3.099 1.399 2.024 2.503 3.679 5.721 6.363 1.628 3.598 1.870 1.962 8.063 10.200 1.615 0.605 0.906 1.580 0.308 0.686 2.107 1.702 0.379 1.471 1.022 3.530 1279 chr19 18524652 18551630 + 0 NA intron (NM_001009998, intron 1 of 16) intron (NM_001009998, intron 1 of 16) 7995 NM_032627 170463 Hs.515259 NM_032627 ENSG00000130511 SSBP4 - single stranded DNA binding protein 4 protein-coding 3.708 1.874 1.676 1.220 3.900 1.880 2.904 0.389 0.084 0.613 0.333 1.206 2.335 2.669 0.096 1.327 2.277 1.107 1.868 2.244 2.135 3.083 1.381 1.711 1.854 0.935 1.464 2.904 4.422 2.896 2.700 0.836 1.496 2.138 1.749 3.395 4.292 2.220 1.186 1.660 1.151 0.490 0.256 2.904 1.206 0.921 1.402 0.856 1.380 419 chr11 18000502 18015419 + 0 NA intron (NM_012139, intron 8 of 10) intron (NM_012139, intron 8 of 10) 26749 NR_104040 26297 Hs.32470 NM_012139 ENSG00000129158 SERGEF DELGEF|Gnefr secretion regulating guanine nucleotide exchange factor protein-coding 0.701 nan 1.224 5.852 0.409 0.174 0.061 0.130 0.032 0.991 0.408 0.416 0.597 0.036 0.076 nan 1.011 0.339 0.386 1.962 2.277 3.139 1.402 0.225 0.322 0.531 nan 4.745 3.882 0.437 0.238 0.363 0.578 1.587 2.493 0.153 0.507 3.264 nan 0.769 0.180 0.249 0.021 0.061 0.416 0.019 1.084 0.066 0.074 2344 chr8 27471429 27511161 + 0 NA promoter-TSS (NM_016240) promoter-TSS (NM_016240) -282 NM_182826 51435 Hs.128856 NM_016240 ENSG00000168077 SCARA3 APC7|CSR|CSR1|MSLR1|MSRL1 scavenger receptor class A member 3 protein-coding nan 0.977 nan 0.112 0.194 0.089 0.522 0.087 0.077 0.039 0.090 0.069 0.217 0.415 0.103 0.396 0.402 0.223 0.341 nan 0.527 nan 0.397 0.172 0.195 0.289 0.477 0.224 0.261 1.155 0.686 0.231 0.279 0.200 0.521 1.321 3.925 nan nan 0.035 0.059 0.032 0.024 0.522 0.069 0.073 0.125 0.039 2.771 515 chr11 111225998 111240794 + 0 NA intron (NM_006235, intron 1 of 4) intron (NM_006235, intron 1 of 4) 14914 NR_039712 100616330 NR_039712 ENSG00000264032 MIR4491 mir-4491 microRNA 4491 ncRNA 0.674 0.902 0.845 0.188 1.347 0.658 0.165 0.076 0.055 0.128 0.222 0.991 0.731 0.052 0.103 3.413 nan 1.052 1.284 0.636 0.788 1.265 0.271 0.375 0.349 1.044 nan 0.668 0.469 0.434 0.305 1.277 2.125 0.778 1.098 0.251 0.405 0.817 0.651 0.456 0.111 0.168 0.097 0.165 0.991 0.597 0.103 1.375 0.093 405 chr11 10919305 10931686 + 0 NA Intergenic Intergenic 45731 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 1.004 nan 1.294 0.597 0.485 0.298 0.887 1.632 0.247 0.165 0.161 0.482 5.230 0.079 0.082 nan 0.761 3.033 9.980 0.789 0.737 0.509 0.197 0.435 0.522 1.480 nan 0.873 0.931 1.380 1.658 0.619 1.030 0.443 0.543 0.378 1.085 0.788 nan 1.139 0.507 0.123 0.051 0.887 0.482 0.110 0.222 0.592 0.232 404 chr11 10877144 10882427 + 0 NA promoter-TSS (NM_021211) promoter-TSS (NM_021211) 21 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 4.672 nan 6.548 9.883 7.423 4.326 3.880 3.500 0.368 4.148 1.885 11.231 17.270 4.155 0.127 nan 9.009 7.361 12.040 17.550 15.797 12.182 6.249 18.309 18.598 6.522 7.515 5.806 8.874 7.834 7.854 5.616 10.267 9.208 10.817 4.788 4.933 4.649 nan 7.380 6.849 2.039 2.395 3.880 11.231 0.665 1.920 4.420 1.496 701 chr13 31035873 31041766 + 0 NA promoter-TSS (NM_001313892) promoter-TSS (NM_001313892) -355 NM_001313892 3146 Hs.434102 NM_002128 ENSG00000189403 HMGB1 HMG-1|HMG1|HMG3|SBP-1 high mobility group box 1 protein-coding 4.821 3.304 4.311 6.632 2.367 1.228 2.305 3.729 0.409 1.326 0.872 5.696 5.277 3.076 0.071 8.324 9.066 7.381 9.329 10.471 8.491 6.932 2.939 8.956 8.985 2.926 4.404 5.483 8.369 13.507 15.995 4.780 10.368 3.565 2.867 10.661 7.189 2.193 1.136 2.711 2.636 0.890 2.345 2.305 5.696 0.688 2.338 3.477 2.561 1003 chr17 4849467 4856287 + 0 NA promoter-TSS (NM_005022) promoter-TSS (NM_005022) -496 NM_005022 5216 Hs.494691 NM_005022 ENSG00000108518 PFN1 ALS18 profilin 1 protein-coding 6.948 2.908 5.158 5.022 9.754 4.701 7.208 2.842 0.330 2.691 1.137 6.442 10.528 4.044 0.115 6.187 9.333 5.334 6.346 8.277 5.706 7.291 2.356 11.647 11.527 2.546 4.398 9.873 12.346 7.352 8.300 2.037 4.421 3.409 2.839 6.280 10.609 2.275 0.856 7.473 5.117 0.976 3.154 7.208 6.442 2.493 7.181 2.815 6.708 1889 chr4 39306835 39315720 + 0 NA intron (NM_002913, intron 12 of 24) L1MB7|LINE|L1 56724 NM_002913 5981 Hs.507475 NM_002913 ENSG00000035928 RFC1 A1|MHCBFB|PO-GA|RECC1|RFC|RFC140 replication factor C subunit 1 protein-coding 0.866 0.540 1.065 0.105 0.416 0.268 0.186 0.691 0.055 0.458 0.245 0.268 0.176 0.074 0.105 0.536 0.510 1.086 0.926 0.714 0.930 0.360 0.201 0.165 0.180 0.816 1.353 1.098 0.760 2.785 1.899 0.421 0.491 0.068 0.085 0.351 0.892 4.908 2.145 0.019 0.296 0.207 0.186 0.268 0.177 0.242 0.090 0.208 1398 chr2 5825078 5839018 + 0 NA promoter-TSS (NR_110580) promoter-TSS (NR_110580) -751 NM_003108 6664 Hs.432638 NM_003108 ENSG00000176887 SOX11 MRD27 SRY-box 11 protein-coding 4.252 1.835 0.762 0.060 5.404 2.662 3.193 0.048 0.127 2.644 1.674 2.027 14.521 0.055 0.089 3.905 5.334 0.287 0.683 9.781 7.305 6.340 2.594 0.036 0.039 0.930 1.508 4.899 8.866 5.349 7.062 0.618 0.943 0.583 0.298 3.932 3.794 0.106 0.126 3.408 6.053 0.198 4.892 3.193 2.027 1.488 3.124 0.234 2.228 1472 chr2 121790675 121799321 + 0 NA Intergenic HAL1|LINE|L1 240131 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 1.412 nan nan 0.106 0.200 0.166 0.241 0.080 0.074 0.059 0.152 0.186 2.096 0.038 0.065 0.491 0.428 0.202 0.405 0.459 0.693 0.964 0.259 0.587 0.587 0.469 1.008 4.319 4.929 1.245 1.652 0.278 0.374 0.984 0.713 0.208 0.339 1.121 0.773 9.311 1.522 0.383 0.192 0.241 0.186 0.621 0.106 0.205 0.128 2267 chr7 57883564 57887781 + 0 NA Intergenic Intergenic 375789 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding nan 1.212 1.611 0.083 0.459 0.105 0.144 0.161 0.038 0.113 0.140 0.142 0.491 0.091 0.278 2.326 5.209 11.652 2.252 0.366 0.493 0.260 0.160 0.541 0.665 0.376 0.801 0.132 0.221 0.753 0.360 0.623 1.109 0.080 0.119 0.220 0.429 0.397 0.363 0.027 0.042 0.091 0.113 0.144 0.142 0.045 0.024 0.175 0.118 2597 chrX 135960750 135968630 + 0 NA Intergenic L2a|LINE|L2 -1751 NR_028476 27316 Hs.380118 NM_002139 ENSG00000147274 RBMX HNRNPG|HNRPG|MRXS11|RBMXP1|RBMXRT|RNMX|hnRNP-G RNA binding motif protein, X-linked protein-coding 3.468 1.991 2.927 2.229 3.969 1.728 2.162 0.846 0.121 0.973 0.262 1.744 5.391 1.398 0.047 3.402 3.387 2.854 4.064 4.904 4.841 3.772 1.508 5.827 5.794 3.079 4.233 3.615 5.830 9.095 9.385 2.581 4.295 2.951 2.974 6.152 8.252 1.839 1.151 1.227 1.728 0.581 1.416 2.162 1.744 0.526 0.854 1.334 2.860 2356 chr8 48647201 48652009 + 0 NA 3' UTR (NM_005195, exon 1 of 1) 3' UTR (NM_005195, exon 1 of 1) 1121 NM_005195 1052 Hs.440829 NM_005195 ENSG00000221869 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT/enhancer binding protein delta protein-coding 5.334 5.210 3.713 8.426 5.622 3.170 3.316 4.537 0.369 2.832 1.203 10.287 10.357 5.421 0.142 0.821 0.767 7.185 12.113 15.777 13.222 5.311 1.641 7.336 7.019 1.698 2.542 7.860 15.187 1.845 1.971 0.712 1.438 7.166 4.267 0.978 1.042 3.616 2.239 6.040 3.548 1.662 5.672 3.316 10.287 0.139 6.625 0.269 0.460 2066 chr6 12007640 12014194 + 0 NA Intergenic Intergenic -1807 NM_002114 3096 Hs.567284 NM_002114 ENSG00000095951 HIVEP1 CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A human immunodeficiency virus type I enhancer binding protein 1 protein-coding 7.665 nan 5.468 3.996 3.748 2.252 4.977 7.713 0.466 2.253 0.924 4.079 6.161 3.356 0.121 4.141 7.614 7.496 11.774 6.556 4.538 5.887 2.298 8.065 7.634 3.001 3.551 5.949 11.106 4.623 7.149 2.078 4.918 4.707 3.334 6.027 6.954 2.395 1.415 1.398 4.295 1.513 4.045 4.977 4.079 1.152 3.291 3.098 1.949 1361 chr19 49893534 49914549 + 0 NA intron (NM_144688, intron 9 of 19) intron (NM_144688, intron 9 of 19) 12566 NM_144688 147872 Hs.662085 NM_144688 ENSG00000161609 CCDC155 KASH5 coiled-coil domain containing 155 protein-coding 1.734 1.219 3.513 0.663 0.848 0.489 1.083 0.077 0.138 0.269 0.112 0.193 0.785 0.182 0.118 0.326 0.287 0.326 0.378 1.848 1.802 3.045 0.645 0.735 0.797 0.462 0.756 2.405 2.424 3.128 2.670 0.375 0.424 1.508 1.231 1.177 2.889 3.123 1.629 3.284 2.281 0.408 0.312 1.083 0.193 0.841 0.655 0.084 0.686 1469 chr2 119579844 119613954 + 0 NA Intergenic Intergenic 8860 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 0.481 nan 0.418 0.044 0.204 0.103 0.088 0.734 0.090 0.065 0.102 0.060 nan 0.102 0.054 0.239 0.118 0.366 0.478 0.217 nan 0.132 0.085 0.256 0.246 0.101 0.155 0.194 0.222 0.317 0.107 7.609 13.322 0.239 0.145 0.151 0.285 0.108 0.191 0.091 0.036 0.087 0.042 0.088 0.060 0.015 0.009 6.980 0.095 2330 chr7 148578618 148583032 + 0 NA promoter-TSS (NM_001203249) promoter-TSS (NM_001203249) -224 NM_001203249 2146 Hs.444082 NM_004456 ENSG00000106462 EZH2 ENX-1|ENX1|EZH1|EZH2b|KMT6|KMT6A|WVS|WVS2 enhancer of zeste 2 polycomb repressive complex 2 subunit protein-coding 9.188 3.640 6.562 6.946 7.420 3.911 7.441 3.150 0.809 4.202 2.014 11.515 11.514 8.331 0.273 7.605 8.745 8.222 10.434 12.047 9.855 9.930 5.270 18.910 19.699 4.448 6.310 6.053 11.235 8.529 10.305 7.251 13.371 13.008 14.398 11.540 8.325 4.714 nan 5.216 7.183 3.581 3.806 7.441 11.515 1.929 5.529 3.121 2.140 2338 chr8 1770887 1817308 + 0 NA intron (NM_001308153, intron 3 of 29) intron (NM_001308153, intron 3 of 29) 21955 NM_001308153 9639 Hs.98594 NM_014629 ENSG00000104728 ARHGEF10 GEF10|SNCV Rho guanine nucleotide exchange factor 10 protein-coding 0.699 0.760 0.572 0.862 0.735 0.407 0.399 0.272 0.062 0.417 0.346 7.502 0.149 0.486 0.124 0.536 0.801 0.634 0.834 3.356 3.233 2.668 1.062 0.587 0.602 0.198 0.324 0.338 0.473 nan 0.423 0.312 0.442 0.638 0.568 0.315 0.511 0.819 0.622 0.336 0.437 0.102 0.015 0.399 7.502 0.065 0.201 0.121 0.162 921 chr16 2194105 2206889 + 0 NA intron (NM_014353, intron 2 of 8) intron (NM_014353, intron 2 of 8) 1846 NM_014353 25837 Hs.3797 NM_014353 ENSG00000167964 RAB26 V46133 RAB26, member RAS oncogene family protein-coding 2.624 nan 7.970 2.513 1.867 1.142 1.144 0.596 0.190 1.710 0.643 0.938 5.096 2.400 0.127 4.013 6.035 1.014 1.383 1.883 1.870 9.892 2.453 2.654 2.668 1.992 nan 3.437 3.045 6.233 9.595 0.762 1.543 2.209 1.939 7.109 7.045 2.583 1.404 0.861 2.778 0.464 1.412 1.144 0.938 1.018 1.661 0.384 2.205 382 chr10 130264930 130282946 + 0 NA Intergenic Intergenic 189724 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 0.393 1.017 0.441 0.048 0.526 0.287 0.257 0.058 0.054 0.035 0.068 0.040 1.437 0.024 0.068 0.217 0.129 0.084 0.095 0.440 0.546 0.058 0.047 0.051 0.061 0.060 0.132 0.128 0.222 0.523 0.495 0.057 0.066 0.031 0.043 0.051 0.101 1.964 0.963 4.152 0.693 0.016 0.075 0.257 0.040 0.087 0.073 0.011 307 chr1 232054824 232078591 + 0 NA intron (NR_126441, intron 1 of 3) intron (NR_126441, intron 1 of 3) 5127 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 1.426 1.149 2.514 1.983 0.892 0.382 0.716 0.272 0.197 0.738 0.259 1.143 1.318 0.036 0.100 0.377 0.512 0.780 2.716 0.890 0.883 nan 3.890 0.259 0.222 0.705 1.091 nan 2.537 0.619 0.374 0.152 0.200 0.642 0.538 0.548 1.154 nan 0.918 1.363 0.162 0.040 1.497 0.716 1.143 0.294 2.630 0.083 0.159 1456 chr2 86973151 86976732 + 0 NA intron (NM_022780, intron 2 of 8) intron (NM_022780, intron 2 of 8) -26696 NM_001198954 100526767 Hs.591582 NM_001198954 ENSG00000249884 RNF103-CHMP3 RNF103-VPS24 RNF103-CHMP3 readthrough protein-coding nan 0.960 nan 1.906 0.870 0.492 0.707 0.622 0.446 0.163 1.101 2.060 0.476 0.112 6.782 8.625 3.048 3.852 0.582 0.524 2.526 0.817 9.327 9.542 0.573 0.553 1.109 0.479 0.450 0.605 15.580 11.465 0.662 1.518 0.637 4.577 0.620 0.462 0.882 1.434 1.415 0.707 1.101 0.133 0.143 3.574 0.211 224 chr1 161122628 161130321 + 0 NA intron (NM_016406, intron 1 of 5) AluSx|SINE|Alu -2780 NM_001319847 27005 Hs.8015 NM_012475 ENSG00000143258 USP21 USP16|USP23 ubiquitin specific peptidase 21 protein-coding 5.352 nan 4.464 3.790 3.990 2.282 4.767 2.313 0.399 2.894 1.396 4.502 7.735 3.342 0.193 6.269 6.277 6.064 8.862 7.704 nan 8.123 5.502 7.501 7.636 4.879 5.942 7.164 nan 5.451 4.873 7.899 8.981 6.062 6.053 6.803 6.303 3.646 2.251 2.718 4.720 0.808 1.506 4.767 4.502 1.022 2.519 2.612 1.683 440 chr11 46140459 46145149 + 0 NA 5' UTR (NM_001101802, exon 1 of 18) 5' UTR (NM_001101802, exon 1 of 18) 181 NM_001101802 51317 Hs.502458 NM_016621 ENSG00000135365 PHF21A BHC80|BM-006 PHD finger protein 21A protein-coding nan 3.291 3.508 5.275 6.055 3.185 5.689 2.662 0.374 2.840 1.687 5.524 15.430 8.964 0.153 4.442 7.471 4.066 4.383 13.422 9.494 7.061 2.467 7.266 7.080 4.596 5.620 2.875 3.919 6.944 8.675 3.112 6.955 5.045 2.974 3.818 nan 2.160 1.193 3.881 5.426 2.133 3.354 5.689 5.524 1.614 3.087 5.199 3.274 1399 chr2 8630053 8693301 + 0 NA Intergenic Intergenic 62245 NR_110257 101929567 Hs.634706 NR_110257 ENSG00000236008 LINC01814 - long intergenic non-protein coding RNA 1814 ncRNA 0.784 0.693 0.990 0.978 1.359 0.766 0.522 0.209 0.056 0.682 0.343 2.631 2.619 0.125 0.108 1.255 1.596 0.518 1.078 1.719 1.863 4.216 1.568 0.735 0.773 0.614 0.874 4.655 3.602 0.593 0.356 0.654 0.957 0.442 0.463 0.294 0.459 1.619 0.926 0.510 0.453 0.063 0.192 0.522 2.631 0.183 2.004 0.452 0.112 1186 chr18 45455869 45459903 + 0 NA promoter-TSS (NM_005901) promoter-TSS (NM_005901) -369 NM_001135937 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding nan 4.269 6.331 7.716 5.912 3.191 11.950 2.123 0.206 1.593 0.713 8.259 12.287 4.201 0.092 7.791 8.645 8.366 10.998 14.242 10.820 13.561 8.346 11.573 11.123 2.755 3.827 6.557 10.745 6.195 6.655 4.145 7.434 9.556 8.772 5.852 nan 5.149 3.072 6.011 4.954 2.610 3.576 11.950 8.259 1.638 3.779 1.695 3.951 1371 chr19 50594190 50643178 + 0 NA Intergenic AluSx|SINE|Alu 2413 NR_024227 100169957 Hs.723094 NR_024227 SNAR-A6 - small ILF3/NF90-associated RNA A6 snRNA 1.811 1.573 1.669 0.220 1.257 0.636 0.374 0.183 0.315 0.233 0.292 0.163 0.510 12.447 0.939 0.488 0.328 0.278 0.341 0.649 0.915 1.659 0.444 0.712 0.677 0.499 0.894 0.665 0.691 1.240 0.421 0.369 0.523 0.226 0.447 0.628 1.335 0.773 0.833 0.089 0.166 0.113 0.087 0.374 0.163 0.152 0.356 0.095 0.270 1786 chr3 114153425 114178066 + 0 NA intron (NM_001164343, intron 8 of 11) intron (NM_001164343, intron 8 of 11) -6695 NR_121661 101929754 Hs.614195 NR_121661 ENSG00000242290 ZBTB20-AS5 - ZBTB20 antisense RNA 5 ncRNA 1.111 nan 0.713 0.302 1.552 0.678 1.302 1.299 0.175 0.838 0.493 4.300 3.918 0.092 0.068 6.998 8.245 10.474 12.929 6.588 nan 1.993 0.613 0.269 0.328 nan 2.694 0.346 0.382 2.329 1.601 2.895 4.690 0.274 0.232 0.299 0.416 2.721 1.816 3.111 0.749 0.050 0.187 1.302 4.300 0.401 0.132 2.445 0.095 393 chr11 818764 833856 + 0 NA TTS (NM_020376) TTS (NM_020376) -1950 NM_001286606 283229 Hs.660936 NM_173584 ENSG00000177685 CRACR2B EFCAB4A calcium release activated channel regulator 2B protein-coding 2.378 3.980 9.433 1.926 0.986 0.696 1.471 0.859 0.192 1.373 0.627 2.137 2.956 1.330 0.073 3.207 4.638 2.364 3.155 2.454 2.257 2.685 0.980 1.757 1.753 1.447 2.224 4.411 5.230 1.577 1.689 1.409 2.217 1.322 1.063 0.902 1.574 1.704 0.978 2.128 3.417 0.202 0.388 1.471 2.137 0.220 1.940 0.912 0.337 638 chr12 68597944 68604249 + 0 NA intron (NM_018402, intron 3 of 4) Tigger2|DNA|TcMar-Tigger 18475 NM_018402 55801 Hs.272350 NM_018402 ENSG00000111536 IL26 AK155|IL-26 interleukin 26 protein-coding 1.401 1.127 1.104 0.741 1.665 0.822 5.156 0.118 0.128 1.797 1.013 1.994 2.727 0.035 0.100 0.275 0.361 0.331 0.455 4.120 nan 1.502 0.404 0.236 0.242 1.756 2.490 1.582 2.141 1.064 0.966 0.191 0.209 3.228 4.754 2.411 4.054 6.016 2.573 1.179 3.308 0.872 3.629 5.156 1.994 0.846 0.177 0.096 1.867 740 chr13 111521159 111527663 + 0 NA Intergenic Intergenic -1756 NR_027701 283487 Hs.245390 NM_178514 ENSG00000255874 LINC00346 C13orf29|NCRNA00346 long intergenic non-protein coding RNA 346 ncRNA 1.174 nan 0.905 2.111 0.440 0.174 2.181 0.820 0.295 0.071 0.053 0.789 0.906 0.322 0.115 0.699 1.064 0.785 1.731 0.646 0.814 8.616 6.913 0.260 0.374 0.166 0.198 0.629 1.123 0.598 0.267 0.616 0.819 1.162 3.794 0.400 0.588 0.224 0.102 0.285 0.477 0.044 0.338 2.181 0.789 0.058 0.706 0.200 0.120 2028 chr5 148922766 148932426 + 0 NA intron (NM_001025105, intron 2 of 10) AluSz|SINE|Alu 2298 NM_001271742 1452 Hs.529862 NM_001892 ENSG00000113712 CSNK1A1 CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975 casein kinase 1 alpha 1 protein-coding nan 3.366 2.789 3.260 4.341 2.211 1.705 2.030 0.261 1.676 0.749 4.370 9.152 4.248 0.133 3.366 2.806 7.259 9.375 5.254 5.219 4.799 2.640 6.877 7.633 3.295 4.256 6.221 10.392 6.818 5.677 3.840 6.708 3.364 5.229 3.093 4.513 2.051 0.880 2.003 3.383 0.957 1.733 1.705 4.370 0.666 1.637 2.141 1.314 1495 chr2 174822620 174832572 + 0 NA intron (NM_001017371, intron 1 of 4) intron (NM_001017371, intron 1 of 4) 1351 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 5.608 4.377 5.158 4.723 6.480 3.475 4.810 3.239 0.418 2.674 1.308 6.986 10.313 3.886 0.081 4.570 4.670 5.196 7.629 6.917 6.709 4.279 2.295 10.676 10.896 3.481 4.352 13.539 18.950 6.933 6.997 3.439 6.358 3.327 2.982 5.666 5.875 1.523 0.914 5.493 2.769 1.066 2.614 4.810 6.986 1.966 1.378 2.189 2.255 1349 chr19 48315738 48333302 + 0 NA promoter-TSS (NM_000554) promoter-TSS (NM_000554) -577 NM_000554 1406 Hs.617342 NM_000554 ENSG00000105392 CRX CORD2|CRD|LCA7|OTX3 cone-rod homeobox protein-coding 1.139 0.774 1.124 0.076 0.316 0.238 0.079 0.068 0.118 0.055 0.066 0.061 0.212 0.161 0.112 0.165 0.171 0.175 0.271 0.295 0.333 0.290 0.174 0.261 0.327 0.194 0.380 0.142 0.226 1.257 0.791 0.141 0.158 0.084 0.114 3.108 10.542 0.363 0.423 0.025 0.035 0.016 0.032 0.079 0.061 0.022 0.029 0.061 4.030 2588 chrX 39941064 39970013 + 0 NA intron (NM_001123384, intron 1 of 13) CpG 1181 NM_017745 54880 Hs.659681 NM_017745 ENSG00000183337 BCOR ANOP2|MAA2|MCOPS2 BCL6 corepressor protein-coding 4.068 3.311 2.917 3.824 3.020 1.640 2.591 1.735 0.233 1.857 0.735 3.362 6.161 1.371 0.052 2.232 2.697 2.241 3.783 6.549 5.479 2.433 0.868 2.996 2.779 1.792 2.439 3.334 4.638 3.816 5.054 2.070 3.247 2.151 1.910 1.821 3.046 1.119 0.742 2.634 1.684 0.873 3.122 2.591 3.362 0.848 1.482 1.696 1.675 664 chr12 110839766 110842629 + 0 NA intron (NM_016238, intron 1 of 10) CpG 338 NM_001137664 51434 Hs.719935 NM_016238 ENSG00000196510 ANAPC7 APC7 anaphase promoting complex subunit 7 protein-coding 7.119 nan 3.522 8.601 6.369 4.021 7.782 5.241 0.454 3.119 2.044 7.310 11.916 5.997 0.330 12.681 8.674 11.103 15.798 nan nan 12.269 10.683 23.691 25.981 7.931 9.026 nan 19.036 15.036 12.272 12.109 13.369 9.310 12.810 10.016 8.142 7.415 4.871 6.615 7.870 1.656 3.655 7.782 7.310 3.089 3.203 4.495 3.413 733 chr13 100504522 100530705 + 0 NA intron (NM_206808, intron 5 of 8) intron (NM_206808, intron 5 of 8) 91806 NR_120421 101927437 Hs.619936 NR_120421 LOC101927437 - uncharacterized LOC101927437 ncRNA 1.958 5.332 4.557 0.947 0.315 0.208 10.913 0.175 0.092 1.495 0.974 0.399 1.054 0.058 0.128 0.686 0.466 0.197 0.141 1.150 1.232 2.543 0.866 0.195 0.153 2.888 nan 1.066 1.327 0.923 0.813 0.228 0.506 3.390 4.656 0.458 nan 1.765 0.917 0.115 0.203 1.039 0.169 10.913 0.399 0.767 0.977 0.129 0.165 2434 chr8 140833176 140878300 + 0 NA intron (NM_031466, intron 21 of 22) MLT1D|LTR|ERVL-MaLR -140439 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 1.389 0.890 nan 1.649 0.548 0.278 0.272 0.070 0.054 0.142 0.074 1.413 3.011 0.039 0.067 0.329 0.326 0.214 0.279 nan 1.368 nan 0.960 0.386 0.401 0.350 0.524 1.856 2.008 0.809 0.919 0.396 0.489 0.462 0.674 0.196 0.258 0.625 0.468 1.510 1.600 0.105 0.063 0.272 1.413 0.191 3.135 0.105 0.085 2308 chr7 114888611 114896374 + 0 NA Intergenic MER70C|LTR|ERVL -21083 NR_126407 104355291 NR_126407 ENSG00000233607 LINC01392 - long intergenic non-protein coding RNA 1392 ncRNA nan 0.783 1.197 0.159 0.233 0.144 0.171 0.114 0.103 0.180 0.146 0.267 0.301 0.042 0.171 0.303 0.300 0.214 0.621 0.234 0.252 0.117 0.086 0.236 0.212 0.487 0.596 0.339 0.377 0.539 0.317 0.225 0.238 8.766 11.812 0.360 0.846 0.634 0.641 0.027 0.081 2.038 0.071 0.171 0.267 0.125 0.092 0.042 0.112 1678 chr21 36507770 36526586 + 0 NA Intergenic Intergenic -95583 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha runt related transcription factor 1 protein-coding 0.618 0.595 0.784 0.114 0.314 0.157 0.334 0.138 0.104 0.025 0.055 0.242 0.539 0.006 0.083 0.731 1.026 4.580 13.135 0.387 0.523 0.399 0.100 0.301 0.348 0.176 0.272 0.441 0.426 0.402 0.158 0.227 0.394 0.077 0.094 0.168 0.220 nan 0.681 0.075 0.189 0.010 0.025 0.334 0.242 0.026 0.027 0.079 0.026 195 chr1 155138644 155149255 + 0 NA intron (NM_173852, intron 3 of 4) intron (NM_173852, intron 3 of 4) 1855 NM_173852 200185 Hs.516671 NM_173852 ENSG00000163463 KRTCAP2 KCP2 keratinocyte associated protein 2 protein-coding nan nan 2.125 1.408 1.750 0.944 3.872 0.990 0.213 1.279 0.732 2.157 7.521 2.336 0.172 2.280 3.056 2.185 2.845 5.672 nan 3.100 1.140 1.419 1.612 1.763 2.569 2.416 3.490 2.435 1.697 2.780 4.211 2.720 2.186 1.489 3.233 1.656 0.764 2.265 2.295 0.893 1.484 3.872 2.157 1.374 2.659 2.697 0.721 1617 chr20 44043778 44051182 + 0 NA intron (NR_047692, intron 2 of 10) intron (NR_047692, intron 2 of 10) 2773 NR_047692 51604 Hs.437388 NM_015937 ENSG00000124155 PIGT CGI-06|MCAHS3|NDAP|PNH2 phosphatidylinositol glycan anchor biosynthesis class T protein-coding nan 4.863 1.847 4.193 4.013 2.156 0.745 0.862 0.109 1.592 0.834 4.638 4.451 1.008 0.119 6.227 11.353 1.615 2.306 1.943 2.178 nan 3.764 3.389 3.575 1.433 2.252 4.909 6.416 nan 1.416 7.326 9.752 1.933 1.428 0.992 1.572 1.709 1.087 0.285 0.406 0.450 2.170 0.745 4.638 0.496 2.412 7.211 0.466 126 chr1 55993035 56009521 + 0 NA Intergenic L1PREC2|LINE|L1 309964 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 1.841 0.892 1.125 0.108 0.421 0.146 0.380 0.448 0.128 0.094 0.093 0.210 0.394 0.033 0.091 0.416 0.325 1.877 6.634 0.646 0.812 0.174 0.102 0.420 0.505 0.749 1.070 0.627 0.553 0.434 0.258 0.283 0.301 0.049 0.061 0.516 nan 0.648 0.543 0.071 0.124 0.082 0.380 0.210 0.176 0.036 0.180 0.581 694 chr13 23053379 23085750 + 0 NA Intergenic Intergenic 285140 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 0.463 0.639 0.566 0.129 0.118 0.049 0.047 0.102 0.097 0.053 0.058 0.074 0.258 7.395 0.202 0.413 0.262 0.235 nan 0.397 0.441 0.065 0.045 0.206 0.172 0.159 0.283 0.178 0.217 0.463 0.167 0.223 0.288 0.043 0.053 0.153 0.222 0.683 0.588 0.098 0.083 0.023 0.223 0.047 0.074 0.015 0.085 0.095 0.026 1838 chr3 168831472 168837975 + 0 NA intron (NM_004991, intron 7 of 16) intron (NM_004991, intron 7 of 16) 29370 NM_001163999 2122 Hs.744090 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 1.159 1.163 1.072 0.176 0.402 0.339 0.192 0.461 0.050 0.244 0.243 0.128 0.208 0.084 0.077 0.273 0.231 6.930 3.370 0.300 0.500 0.204 0.102 0.184 0.137 0.574 0.808 nan 0.359 nan 0.206 0.074 0.221 0.951 0.884 0.276 0.508 0.657 0.501 0.009 0.050 0.059 0.192 0.128 0.015 0.079 0.077 0.292 653 chr12 104522864 104533097 + 0 NA intron (NM_006166, intron 2 of 7) intron (NM_006166, intron 2 of 7) 4060 NM_006166 4801 Hs.84928 NM_006166 ENSG00000120837 NFYB CBF-A|CBF-B|HAP3|NF-YB nuclear transcription factor Y subunit beta protein-coding 2.634 2.168 nan 2.836 3.366 1.639 2.400 1.541 0.315 1.210 0.781 3.497 3.399 1.708 0.173 2.601 2.304 3.080 4.523 4.755 4.508 5.261 1.949 4.278 4.065 2.534 3.513 3.137 4.855 3.694 3.832 1.123 2.788 2.497 1.926 3.816 3.220 4.957 2.053 1.688 1.990 0.521 0.846 2.400 3.497 0.389 1.220 0.741 0.976 558 chr12 7008314 7025048 + 0 NA intron (NM_201650, intron 5 of 7) MIRc|SINE|MIR 2784 NM_001135217 10233 Hs.155586 NM_006992 ENSG00000010626 LRRC23 LRPB7 leucine rich repeat containing 23 protein-coding 2.075 nan nan 1.850 2.043 1.112 2.150 0.192 0.067 0.732 0.515 2.053 3.901 0.748 0.171 0.800 1.308 1.945 2.843 nan 4.219 5.023 2.815 1.774 1.828 1.694 2.377 1.384 2.695 0.967 0.846 0.957 1.740 1.999 1.707 1.906 nan 1.313 0.755 1.298 1.437 0.346 1.544 2.150 2.053 3.166 0.643 0.566 1.136 311 chr1 234719788 234768470 + 0 NA intron (NM_001077397, intron 1 of 1) intron (NM_001077397, intron 1 of 1) 1142 NM_182972 359948 Hs.350268 NM_182972 ENSG00000168264 IRF2BP2 - interferon regulatory factor 2 binding protein 2 protein-coding 5.190 4.061 5.285 5.096 8.077 4.001 3.713 2.647 0.225 3.976 2.099 5.007 9.624 1.466 0.138 2.926 4.474 3.845 8.919 7.194 6.478 nan 1.516 4.630 4.565 2.719 3.639 nan 7.264 4.317 5.131 2.220 3.081 6.515 7.799 3.507 6.333 nan 1.321 2.540 2.316 2.303 2.268 3.713 5.007 1.028 1.701 1.706 2.860 344 chr10 13194716 13212333 + 0 NA promoter-TSS (NM_018518) promoter-TSS (NM_018518) -30 NM_182751 55388 Hs.198363 NM_018518 ENSG00000065328 MCM10 CNA43|DNA43|PRO2249 minichromosome maintenance 10 replication initiation factor protein-coding nan 0.776 0.795 0.427 0.579 0.237 0.348 0.385 0.137 0.233 0.202 0.367 0.794 0.259 0.097 1.197 0.768 0.873 1.276 0.751 0.679 5.089 1.897 0.816 0.770 0.830 1.274 0.850 1.400 0.545 0.549 0.380 0.510 0.791 1.056 0.820 0.802 1.366 0.695 0.111 0.550 0.131 0.202 0.348 0.367 0.132 0.178 0.079 0.105 1445 chr2 66908646 66930234 + 0 NA intron (NR_110156, intron 5 of 5) intron (NR_110156, intron 5 of 5) 10919 NR_110265 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 1.220 0.723 nan 0.130 0.792 0.371 0.131 0.125 0.052 0.255 0.175 0.277 0.576 0.066 0.107 1.030 0.937 4.953 4.687 0.437 0.543 nan 0.278 0.557 0.528 0.436 0.612 0.646 0.505 0.906 0.488 0.846 2.724 0.647 0.522 1.036 2.598 0.333 0.325 0.064 0.127 0.185 0.184 0.131 0.277 0.032 0.047 0.870 1.642 492 chr11 75857357 75875035 + 0 NA Intergenic AluSz|SINE|Alu 51378 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding nan 1.264 1.126 2.312 0.705 0.346 0.210 0.239 0.100 3.114 0.973 2.699 1.567 0.111 0.076 0.601 0.605 0.351 0.682 1.807 2.136 2.624 0.913 0.953 1.072 0.752 1.291 2.256 3.908 0.761 0.789 0.567 0.464 1.769 2.307 0.431 1.005 4.223 1.834 0.878 0.558 0.964 0.059 0.210 2.699 0.163 0.648 0.091 0.159 1539 chr2 218866275 218887559 + 0 NA Intergenic Intergenic -22740 NR_034176 285180 Hs.570069 NM_198483 ENSG00000188282 RUFY4 ZFYVE31 RUN and FYVE domain containing 4 protein-coding nan 0.540 nan 0.111 0.362 0.193 0.326 0.112 0.076 0.060 0.100 0.252 0.785 0.132 0.089 2.403 4.105 1.045 0.653 0.608 0.557 0.201 0.116 0.719 0.783 0.262 0.514 0.460 nan 0.477 0.386 0.763 0.971 0.039 0.062 0.777 1.304 0.317 0.354 0.241 0.080 0.027 0.096 0.326 0.252 0.215 0.028 0.121 0.128 322 chr1 246263498 246281071 + 0 NA intron (NM_001167740, intron 5 of 11) L2c|LINE|L2 308430 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding nan 1.219 nan 4.350 0.704 0.330 1.188 0.323 0.111 0.484 0.408 1.640 1.441 0.110 0.114 0.434 0.400 0.521 0.880 0.869 1.038 6.933 2.645 0.605 0.677 0.541 0.717 5.062 5.341 0.372 0.205 0.162 0.295 0.885 1.362 0.558 1.133 1.226 0.835 0.110 0.162 0.109 0.059 1.188 1.640 0.050 2.567 0.060 0.266 408 chr11 12397673 12413892 + 0 NA intron (NM_018222, intron 1 of 12) intron (NM_018222, intron 1 of 12) 6756 NM_018222 55742 Hs.432914 NM_018222 ENSG00000197702 PARVA CH-ILKBP|MXRA2 parvin alpha protein-coding 1.398 nan 0.852 0.458 0.465 0.266 0.456 1.076 0.111 0.251 0.223 4.166 0.732 0.412 0.081 nan 1.072 1.361 2.044 1.412 1.487 1.854 0.632 2.538 2.369 0.543 nan 1.098 1.516 0.867 0.857 0.745 1.080 1.059 0.873 0.439 0.660 1.862 nan 0.410 0.300 0.316 0.215 0.456 4.166 0.163 0.006 0.220 0.107 127 chr1 56181485 56195494 + 0 NA Intergenic MIRc|SINE|MIR 497175 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 1.064 0.713 0.977 0.164 0.235 0.068 0.138 0.856 0.164 0.077 0.117 0.119 0.378 0.039 0.109 0.367 0.280 2.558 6.712 0.457 0.492 0.122 0.077 0.538 0.537 0.619 0.953 0.409 0.469 0.385 0.165 0.175 0.283 0.045 0.040 0.490 nan 0.589 0.536 0.083 0.070 0.006 0.080 0.138 0.119 0.119 0.058 0.040 0.167 303 chr1 228718087 228785540 + 0 NA TTS (NR_106988).5 TTS (NR_106988).5 1004 NR_106988 102465753 NR_106988 ENSG00000280494 MIR7641-2 B-ATF|hsa-mir-7641-2 microRNA 7641-2 ncRNA 2.773 nan 7.295 3.712 6.460 3.530 3.793 0.414 0.351 0.861 0.660 0.630 5.185 6.700 0.406 1.455 1.511 1.472 3.426 2.242 nan 2.528 0.645 3.203 3.075 3.282 4.717 1.036 1.146 3.359 3.048 1.363 1.900 0.814 0.886 1.159 2.773 1.238 0.769 0.686 0.689 0.343 0.378 3.793 0.630 0.760 1.234 0.488 1.615 1146 chr18 901429 912097 + 0 NA intron (NM_001099733, intron 2 of 4) CpG 1566 NM_001117 116 Hs.531719 NM_001117 ENSG00000141433 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 protein-coding 3.912 1.734 1.001 7.570 0.687 0.330 0.477 0.096 0.046 1.438 0.622 1.102 20.744 0.133 0.129 0.239 0.126 0.079 0.067 3.942 3.246 nan 2.102 0.248 0.232 1.946 nan 4.425 4.000 nan 0.752 0.082 0.104 2.168 1.954 0.157 nan nan 3.094 9.888 1.963 0.411 0.650 0.477 1.102 0.172 4.997 0.059 364 chr10 71805372 71814734 + 0 NA Intergenic MIR|SINE|MIR -2304 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 3.529 nan 4.725 0.271 3.216 1.598 1.211 0.081 0.085 1.332 0.740 3.229 2.693 2.092 0.148 4.787 5.022 9.140 7.660 3.669 3.811 5.053 1.622 2.507 2.678 0.079 0.228 4.599 nan 1.728 1.611 2.469 4.959 1.829 1.108 0.094 nan 1.383 0.974 0.991 0.797 0.164 1.164 1.211 3.229 0.426 0.044 1.482 0.028 401 chr11 6460102 6481933 + 0 NA intron (NM_006458, intron 11 of 12) L2b|LINE|L2 -8763 NM_000613 3263 Hs.426485 NM_000613 ENSG00000110169 HPX HX hemopexin protein-coding 0.591 0.741 0.860 0.998 0.495 0.312 0.221 0.127 0.118 0.165 0.132 4.873 0.411 0.049 0.056 0.572 0.536 0.368 0.409 4.983 6.367 1.163 0.261 0.522 0.568 0.330 0.537 1.862 1.477 0.363 0.168 0.373 0.368 0.163 0.168 0.275 0.714 0.941 0.589 1.149 2.131 0.030 0.127 0.221 4.873 0.013 0.037 0.077 0.160 685 chr12 125216534 125256983 + 0 NA Intergenic Intergenic 111761 NM_001082959 949 Hs.731377 NM_005505 ENSG00000073060 SCARB1 CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1 scavenger receptor class B member 1 protein-coding 1.639 1.723 1.625 0.219 0.745 0.384 0.850 0.579 0.195 0.248 0.210 0.565 2.004 0.426 0.133 1.442 2.156 0.462 0.932 1.128 1.168 nan 0.344 0.425 0.475 2.682 3.220 0.829 1.170 4.630 3.781 0.761 0.916 0.548 0.833 1.262 3.469 1.533 0.952 1.258 1.276 0.249 0.099 0.850 0.565 1.063 0.307 0.690 0.987 600 chr12 46116875 46129226 + 0 NA promoter-TSS (NM_152641) promoter-TSS (NM_152641) -442 NM_001347839 196528 Hs.317304 NM_152641 ENSG00000189079 ARID2 BAF200|p200 AT-rich interaction domain 2 protein-coding 5.145 nan 3.346 4.520 5.350 3.077 3.568 2.622 0.300 2.111 1.660 5.396 4.654 2.859 0.141 5.941 7.075 6.764 7.863 11.013 9.960 6.250 3.488 19.245 19.603 4.120 4.723 5.617 9.435 7.430 7.875 3.761 7.983 5.742 5.730 7.230 5.857 2.550 1.356 4.466 5.474 1.538 2.759 3.568 5.396 1.340 2.377 3.181 2.500 988 chr16 84267913 84287380 + 0 NA Intergenic MLT1M|LTR|ERVL-MaLR -4290 NM_172347 93107 Hs.335877 NM_133490 ENSG00000168418 KCNG4 KV6.3|KV6.4 potassium voltage-gated channel modifier subfamily G member 4 protein-coding nan 0.598 0.819 0.179 0.258 0.148 0.317 0.066 0.094 0.057 0.059 0.183 0.232 0.095 0.071 0.340 0.339 0.173 0.207 0.294 0.356 0.604 0.251 0.239 0.279 0.079 0.191 0.327 0.504 4.459 3.627 0.167 0.204 0.124 0.126 1.270 3.678 0.361 0.462 0.066 0.082 0.015 0.049 0.317 0.183 0.279 0.033 0.030 0.762 96 chr1 40625548 40629642 + 0 NA intron (NM_012421, intron 1 of 7) CpG 554 NM_012421 6018 Hs.205627 NM_012421 ENSG00000117000 RLF ZN-15L|ZNF292L rearranged L-myc fusion protein-coding 28.302 2.441 nan 15.549 2.979 2.272 69.384 1.882 0.366 2.411 1.024 5.641 4.297 1.984 0.108 3.690 3.825 4.535 6.203 8.464 7.927 4.347 2.530 10.251 10.949 3.851 nan nan 14.021 4.927 6.152 5.680 nan 1.784 1.877 4.944 5.535 63.995 48.029 0.840 1.500 0.118 16.497 69.384 5.641 0.595 0.856 1.942 1.328 1561 chr2 242354495 242361637 + 0 NA intron (NM_014808, intron 8 of 26) MER112|DNA|hAT-Charlie -59254 NR_036083 100422942 NR_036083 ENSG00000263752 MIR3133 - microRNA 3133 ncRNA 1.035 nan 1.316 1.256 0.743 0.473 0.124 0.043 0.181 0.308 0.270 7.233 0.523 0.091 0.112 0.934 1.578 0.360 0.485 1.269 2.038 2.388 0.560 0.708 0.619 0.405 0.651 3.054 3.554 0.346 0.164 1.078 1.755 0.247 0.435 0.234 0.548 0.568 0.513 0.612 0.161 0.080 0.011 0.124 7.233 0.068 0.528 0.501 0.086 1429 chr2 39365715 39370591 + 0 NA Intergenic AluSz|SINE|Alu -20549 NM_005633 6654 Hs.709893 NM_005633 ENSG00000115904 SOS1 GF1|GGF1|GINGF|HGF|NS4 SOS Ras/Rac guanine nucleotide exchange factor 1 protein-coding 0.976 nan nan 0.184 0.306 0.113 0.369 1.271 0.174 0.118 0.136 0.319 0.422 0.200 0.083 4.467 3.232 9.830 7.807 0.300 0.452 0.593 0.249 1.205 nan 0.365 0.386 0.352 0.315 nan 0.191 4.719 5.872 0.085 0.103 0.292 0.770 0.340 0.610 0.077 0.126 0.020 0.131 0.369 0.319 0.019 0.021 1.904 0.176 153 chr1 94039564 94070629 + 0 NA intron (NM_001261408, intron 6 of 13) intron (NM_001261408, intron 6 of 13) -2429 NR_034091 100129046 Hs.729244 NR_034091 LOC100129046 - uncharacterized LOC100129046 ncRNA nan nan 1.479 0.671 0.643 0.295 1.449 1.753 0.295 0.388 0.255 0.581 1.860 0.101 0.117 0.486 0.653 0.415 0.783 1.353 nan 1.872 0.525 0.667 0.685 1.836 nan 4.183 4.493 nan 0.418 0.503 0.449 1.235 0.843 0.507 0.839 1.530 0.820 2.107 0.527 0.316 0.123 1.449 0.581 0.066 0.667 0.437 0.245 1303 chr19 38825903 38828592 + 0 NA intron (NM_001330496, intron 1 of 27) CpG 804 NM_021185 57828 Hs.324335 NM_021185 ENSG00000099338 CATSPERG C19orf15 cation channel sperm associated auxiliary subunit gamma protein-coding 3.165 2.645 3.493 6.208 2.948 2.349 1.011 1.956 0.475 1.221 0.459 2.401 23.259 3.807 0.166 1.408 2.770 3.490 4.249 5.197 3.675 8.171 3.385 7.715 9.707 1.933 3.124 5.929 7.327 nan 2.728 1.769 2.571 2.757 2.053 1.701 3.655 2.849 1.147 2.862 5.322 0.486 1.413 1.011 2.401 0.540 2.504 1.377 0.730 1784 chr3 108783633 108793283 + 0 NA intron (NM_014429, intron 9 of 27) intron (NM_014429, intron 9 of 27) -31845 NR_144461 100506506 Hs.278908 NR_144461 MORC1-AS1 - MORC1 antisense RNA 1 ncRNA nan nan 0.644 0.092 0.383 0.132 0.131 0.106 0.133 0.083 0.092 0.297 0.194 0.022 0.127 3.872 4.013 7.717 2.021 0.311 0.334 0.266 0.105 0.494 0.450 0.176 0.204 0.210 0.229 1.452 0.613 1.029 1.543 0.065 0.037 0.265 0.348 0.515 0.524 0.023 0.083 0.020 0.017 0.131 0.297 0.010 0.021 0.697 0.038 2589 chrX 40001128 40036982 + 0 NA intron (NM_001123384, intron 1 of 13) intron (NM_001123384, intron 1 of 13) 17527 NM_001123383 54880 Hs.659681 NM_017745 ENSG00000183337 BCOR ANOP2|MAA2|MCOPS2 BCL6 corepressor protein-coding 3.618 3.066 3.177 3.294 2.127 1.171 2.467 1.323 0.175 2.389 1.002 3.227 4.010 1.619 0.054 1.221 1.396 2.131 3.465 5.866 4.812 3.258 1.052 3.169 3.181 0.772 1.040 4.459 6.028 4.734 6.376 1.571 1.887 2.588 1.975 1.445 2.620 1.374 0.752 3.530 1.740 0.563 2.130 2.467 3.227 0.979 1.366 1.110 1.289 896 chr15 80405776 80414971 + 0 NA intron (NM_001242917, intron 2 of 6) intron (NM_001242917, intron 2 of 6) 19615 NM_001242919 54469 Hs.596679 NM_019006 ENSG00000086666 ZFAND6 AWP1|ZA20D3|ZFAND5B zinc finger AN1-type containing 6 protein-coding 0.785 nan 0.891 0.143 0.283 0.087 0.153 0.168 0.069 0.118 0.131 0.092 0.439 0.083 0.121 0.585 0.778 0.458 0.435 0.266 0.333 0.363 0.147 0.398 0.428 4.752 4.431 0.360 0.348 1.449 1.107 0.390 0.665 0.055 0.094 0.329 0.607 0.497 0.370 0.036 0.124 0.010 0.017 0.153 0.092 0.339 0.154 0.303 0.067 945 chr16 28920624 28937965 + 0 NA intron (NM_024816, intron 3 of 12) MIRb|SINE|MIR 7238 NM_024816 79874 Hs.555978 NM_024816 ENSG00000177548 RABEP2 FRA rabaptin, RAB GTPase binding effector protein 2 protein-coding 1.539 1.158 nan 1.826 1.537 0.786 0.609 0.421 0.110 0.548 0.300 1.088 3.533 0.796 0.097 1.159 1.496 1.301 1.753 1.689 1.335 nan 1.403 3.135 3.240 0.813 0.985 6.028 6.961 1.331 1.371 0.925 1.489 0.976 0.745 1.514 3.252 1.114 0.702 1.814 0.788 0.147 0.403 0.609 1.088 0.454 0.800 0.799 0.486 2202 chr6 162337423 162346490 + 0 NA intron (NM_013987, intron 5 of 10) Tigger3b|DNA|TcMar-Tigger 449947 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 0.763 nan 0.787 0.108 0.421 0.141 1.326 0.106 0.146 0.956 0.330 0.514 0.390 0.025 0.156 0.554 0.405 0.639 0.984 1.059 1.156 4.507 1.531 0.310 0.284 0.208 0.269 0.875 0.976 nan 0.409 0.219 0.270 6.858 7.497 0.136 0.247 1.352 0.866 0.025 0.020 1.535 0.018 1.326 0.514 0.047 0.615 0.054 0.096 2460 chr8 145978895 145989006 + 0 NA Intergenic L2|LINE|L2 -2980 NM_138367 90987 Hs.534516 NM_138367 ENSG00000198169 ZNF251 - zinc finger protein 251 protein-coding 4.623 1.575 nan 2.722 2.185 1.013 1.477 0.849 0.160 0.496 0.309 3.951 5.646 0.857 0.080 1.953 1.798 1.510 2.312 nan 6.142 nan 1.352 2.537 2.872 1.448 1.866 3.172 4.571 1.775 1.476 1.516 2.520 1.452 1.596 1.971 4.244 2.635 1.285 1.794 2.072 0.311 0.598 1.477 3.951 0.595 2.448 1.108 1.003 330 chr10 1280675 1287420 + 0 NA intron (NM_018702, intron 5 of 9) intron (NM_018702, intron 5 of 9) 78339 NR_015376 399706 Hs.721191 NM_001010910 ENSG00000229205 LINC00200 C10orf139|NCRNA00200 long intergenic non-protein coding RNA 200 ncRNA 0.550 0.367 0.965 1.474 1.396 0.596 1.915 0.186 0.118 0.398 0.290 6.843 2.450 0.420 0.109 0.444 0.680 0.151 0.227 1.547 2.150 3.005 1.251 2.493 3.409 0.183 0.252 2.289 2.062 0.162 0.088 0.331 0.264 0.124 0.082 0.150 0.225 0.298 0.228 0.212 1.099 0.029 0.095 1.915 6.843 1.322 4.920 0.278 0.055 215 chr1 157962117 158052563 + 0 NA intron (NM_001286349, intron 1 of 12) MIRb|SINE|MIR 44277 NM_001286349 55243 Hs.272234 NM_018240 ENSG00000183853 KIRREL NEPH1 kin of IRRE like (Drosophila) protein-coding nan nan 2.289 0.054 0.180 0.074 0.115 1.661 0.216 0.094 0.138 0.050 0.318 0.187 0.097 1.051 1.684 0.846 2.505 0.264 nan 0.124 0.069 0.256 0.268 0.972 1.426 0.499 0.705 0.644 0.441 0.711 0.898 0.544 0.443 1.362 3.397 0.801 0.639 0.025 0.187 0.136 0.043 0.115 0.050 0.048 0.022 0.157 0.864 188 chr1 154528866 154548036 + 0 NA Intergenic Intergenic -1806 NM_000748 1141 Hs.2306 NM_000748 ENSG00000160716 CHRNB2 EFNL3|nAChRB2 cholinergic receptor nicotinic beta 2 subunit protein-coding nan nan 2.051 1.250 1.547 0.812 2.147 0.750 0.126 1.248 0.719 1.407 6.014 0.903 0.117 2.815 2.939 1.703 2.078 3.525 nan 2.855 0.853 0.838 0.702 2.302 2.837 3.004 4.025 1.760 1.781 3.697 5.606 1.603 1.805 1.514 2.325 1.765 0.845 0.838 2.231 0.210 0.781 2.147 1.407 0.449 1.893 3.171 0.490 2552 chr9 130417430 130427572 + 0 NA intron (NM_001032221, intron 5 of 18) intron (NM_001032221, intron 5 of 18) 30573 NR_037473 100500872 NR_037473 ENSG00000279571 MIR3911 mir-3911 microRNA 3911 ncRNA nan 0.861 5.427 0.321 0.538 0.372 0.163 0.200 0.162 0.502 0.187 0.474 0.333 0.022 0.080 0.487 1.032 0.271 0.359 2.146 2.265 nan 0.188 0.386 0.346 2.366 2.666 2.760 3.379 8.131 7.424 0.203 0.342 1.213 1.621 2.405 5.118 2.377 1.418 0.098 0.264 0.302 1.700 0.163 0.474 2.344 0.250 0.039 1.012 1202 chr18 53013547 53025526 + 0 NA intron (NM_001330604, intron 6 of 19) intron (NM_001330604, intron 6 of 19) -30446 NM_001243235 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding nan 0.857 0.868 0.096 0.652 0.227 0.182 0.181 0.058 0.117 0.199 0.210 0.272 0.296 0.062 0.476 0.393 5.349 6.396 0.476 0.758 0.768 0.426 0.648 0.569 1.038 1.142 0.263 0.355 0.720 0.560 0.212 0.276 0.378 0.513 0.264 0.545 nan 1.247 0.029 0.142 0.087 0.080 0.182 0.210 0.048 0.106 0.058 0.132 676 chr12 122231704 122251735 + 0 NA promoter-TSS (NR_002809) promoter-TSS (NR_002809) -329 NR_002809 338799 Hs.524804 NR_002809 ENSG00000212694 LINC01089 LIMT long intergenic non-protein coding RNA 1089 ncRNA 5.120 4.102 5.259 6.129 6.669 3.396 5.278 2.343 0.337 3.943 1.945 8.725 14.687 7.618 0.150 5.372 6.334 5.979 9.052 11.671 10.593 nan 3.832 11.710 12.178 3.796 5.082 10.155 11.693 7.571 7.512 4.565 8.005 8.289 7.713 6.023 6.391 4.264 2.205 7.619 9.504 2.833 4.249 5.278 8.725 1.668 4.256 3.772 2.354 540 chr11 129182267 129196376 + 0 NA Intergenic Intergenic -56560 NM_003658 8538 Hs.591944 NM_003658 ENSG00000043039 BARX2 - BARX homeobox 2 protein-coding 0.876 1.983 3.449 1.443 0.769 0.337 0.229 0.031 0.045 1.163 0.585 1.402 2.860 0.107 0.094 0.933 1.050 0.392 0.596 0.743 0.806 3.427 1.002 0.616 0.720 0.578 0.941 7.307 7.276 1.548 1.686 1.668 2.134 2.117 1.726 0.270 nan 1.604 1.083 0.412 0.408 0.472 0.056 0.229 1.402 0.217 1.580 1.229 0.189 1673 chr21 34912025 34918441 + 0 NA promoter-TSS (NM_001291412) promoter-TSS (NM_001291412) -35 NM_001136006 2618 Hs.473648 NM_000819 ENSG00000159131 GART AIRS|GARS|GARTF|PAIS|PGFT|PRGS phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase protein-coding 6.739 3.432 5.888 5.824 6.101 3.147 5.116 3.308 0.176 2.715 0.979 5.813 14.380 4.092 0.106 10.674 8.355 7.591 9.967 9.588 10.036 6.252 4.475 19.606 21.441 6.589 8.226 8.788 13.499 14.648 13.793 5.494 9.013 8.591 11.471 10.381 9.497 nan 2.906 4.561 5.964 1.676 3.259 5.116 5.813 1.832 2.801 2.844 2.694 665 chr12 115100050 115144330 + 0 NA promoter-TSS (NM_005996) promoter-TSS (NM_005996) -221 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box 3 protein-coding nan nan 0.429 0.593 0.823 0.457 0.846 0.078 0.075 0.035 0.095 0.791 2.736 0.380 0.104 0.836 1.129 0.245 0.343 nan nan nan 0.050 21.399 21.768 0.117 0.210 nan nan 0.237 0.091 3.984 8.117 0.572 0.402 0.955 1.163 nan 0.326 7.512 1.104 0.130 0.274 0.846 0.791 0.011 0.598 3.286 0.447 1733 chr22 41680839 41686353 + 0 NA intron (NM_001317930, intron 1 of 15) AluJb|SINE|Alu -1341 NM_002883 5905 Hs.183800 NM_002883 ENSG00000100401 RANGAP1 Fug1|RANGAP|SD Ran GTPase activating protein 1 protein-coding 2.365 nan 3.502 3.585 2.507 1.509 1.968 1.310 0.349 1.376 0.739 4.272 7.068 6.026 0.202 3.098 2.884 3.655 5.798 3.941 3.160 5.062 2.602 3.029 3.078 2.300 nan 5.347 8.515 nan 4.659 1.264 2.126 3.890 6.058 2.788 3.361 3.012 1.642 1.042 1.870 1.003 0.912 1.968 4.272 1.375 5.484 0.548 1.231 2205 chr6 168770303 168795137 + 0 NA Intergenic Intergenic -59111 NM_022138 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 0.649 nan 2.300 2.952 0.568 0.297 0.556 0.054 0.013 0.529 0.261 7.533 1.554 0.035 0.078 0.269 0.233 0.214 0.331 7.554 7.950 3.265 1.458 0.144 0.171 0.059 0.108 4.713 4.924 nan 0.178 0.236 0.327 0.638 0.339 0.107 0.117 1.452 0.794 0.137 0.308 0.067 0.029 0.556 7.533 0.047 0.929 0.061 0.035 61 chr1 27188164 27193149 + 0 NA 3' UTR (NM_006142, exon 1 of 1) 3' UTR (NM_006142, exon 1 of 1) 1023 NM_006142 2810 Hs.523718 NM_006142 ENSG00000175793 SFN YWHAS stratifin protein-coding 3.252 6.852 3.353 8.279 7.434 3.604 5.204 2.088 0.838 2.191 1.317 3.284 20.927 4.128 0.159 2.039 2.534 4.114 5.320 7.312 5.760 6.856 2.610 7.329 7.618 2.908 3.894 8.829 14.420 2.543 2.622 2.019 3.123 5.039 4.546 2.312 3.381 4.230 1.824 9.863 9.915 1.306 1.008 5.204 3.284 2.455 3.022 1.409 0.820 1765 chr3 41235370 41242752 + 0 NA Intergenic Intergenic -1854 NM_001330729 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|MRD19|armadillo catenin beta 1 protein-coding 2.022 nan nan 1.418 1.080 0.591 1.353 1.164 0.109 1.289 0.812 1.038 4.886 1.521 0.133 1.237 1.939 3.083 3.445 4.113 3.630 2.505 1.192 3.525 3.394 1.460 1.925 2.808 4.272 8.966 9.802 1.467 2.968 6.073 5.463 2.186 1.776 1.128 0.562 0.832 1.082 1.261 0.909 1.353 1.038 0.370 1.266 0.550 0.582 2189 chr6 154549046 154571525 + 0 NA intron (NM_001130700, intron 5 of 11) intron (NM_001130700, intron 5 of 11) 90930 NM_001130699 26034 Hs.146100 NM_015553 ENSG00000074706 IPCEF1 PIP3-E interaction protein for cytohesin exchange factors 1 protein-coding nan 1.227 0.568 0.136 0.367 0.157 0.387 0.133 0.079 0.035 0.084 0.207 0.260 0.049 0.127 0.420 0.232 10.084 9.213 0.751 nan 0.890 0.307 3.075 3.066 0.095 0.170 0.385 0.423 0.777 0.585 0.149 0.282 0.138 0.114 0.179 nan 0.305 0.291 0.017 0.130 0.013 0.059 0.387 0.207 0.009 0.065 0.013 0.081 2323 chr7 139702198 139720453 + 0 NA intron (NM_001130966, intron 14 of 16) ALINE|LINE|RTE 52196 NM_022750 64761 Hs.12646 NM_022750 ENSG00000059378 PARP12 ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1 poly(ADP-ribose) polymerase family member 12 protein-coding nan nan nan 0.221 0.353 0.167 0.168 0.150 0.098 0.311 0.202 7.999 0.288 0.095 0.130 0.460 0.396 0.276 0.327 0.826 0.770 nan 0.277 0.571 0.585 0.148 nan 0.383 0.738 nan 0.240 0.375 0.355 0.151 0.208 0.322 0.674 1.696 nan 0.110 0.224 0.021 0.061 0.168 7.999 0.069 0.078 0.033 0.089 1549 chr2 233350649 233358146 + 0 NA Intergenic Intergenic -1828 NM_001290787 9427 Hs.26880 NM_004826 ENSG00000171551 ECEL1 DA5D|DINE|ECEX|XCE endothelin converting enzyme like 1 protein-coding 1.265 nan 1.130 0.199 0.524 0.273 0.664 0.066 0.065 0.130 0.054 0.047 0.703 0.280 0.064 0.364 0.286 0.684 0.894 0.749 0.514 0.427 0.153 0.496 0.634 0.067 0.183 0.843 nan 0.339 0.257 0.212 0.194 0.165 0.181 0.866 2.510 0.232 0.279 0.496 0.036 0.013 0.021 0.664 0.047 0.089 6.033 0.027 0.428 948 chr16 30005206 30017611 + 0 NA intron (NR_134855, intron 3 of 10) intron (NR_134855, intron 3 of 10) 3878 NR_130787 283899 Hs.434864 NM_173618 ENSG00000169592 INO80E CCDC95 INO80 complex subunit E protein-coding 2.703 1.903 nan 5.117 4.434 2.035 2.539 0.718 0.169 1.007 0.474 2.973 6.563 1.032 0.067 3.229 2.810 2.110 2.950 5.186 4.650 nan 3.217 4.062 4.389 2.538 3.309 7.188 8.421 3.924 3.489 2.781 3.229 2.985 3.523 2.007 2.386 2.607 1.371 3.886 2.197 0.627 1.019 2.539 2.973 0.874 1.924 1.349 1.097 139 chr1 71871474 71884253 + 0 NA intron (NM_173808, intron 6 of 6) L2c|LINE|L2 330856 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA nan 0.776 0.873 0.411 0.469 0.188 0.118 0.113 0.176 0.294 0.193 0.299 0.344 0.060 0.110 0.523 0.321 0.226 0.206 0.551 nan 6.277 2.509 1.122 1.105 0.618 nan 0.993 0.927 0.422 0.155 0.186 0.263 0.184 0.214 0.350 0.623 0.679 0.452 0.088 0.105 0.052 0.006 0.118 0.299 0.016 0.031 0.058 1707 chr22 23499835 23506909 + 0 NA intron (NM_004914, intron 10 of 10) intron (NM_004914, intron 10 of 10) 15859 NM_004914 9609 Hs.353024 NM_004914 ENSG00000100228 RAB36 - RAB36, member RAS oncogene family protein-coding 1.399 nan 0.991 0.177 0.144 0.091 0.149 0.054 0.327 0.243 3.139 0.329 0.130 0.081 0.452 0.584 0.340 0.504 3.390 3.410 4.029 1.045 0.389 0.508 1.406 2.174 0.279 0.341 0.621 0.372 0.238 0.249 0.905 0.945 0.218 0.281 5.027 2.755 0.047 0.163 0.136 2.025 0.149 3.139 0.898 0.100 0.057 751 chr14 21559851 21579300 + 0 NA exon (NM_001146683, exon 3 of 8) exon (NM_001146683, exon 3 of 8) -2402 NM_001101672 51222 Hs.250493 NM_016423 ENSG00000165804 ZNF219 ZFP219 zinc finger protein 219 protein-coding nan 1.830 3.098 2.292 2.290 1.367 2.751 1.620 0.197 0.485 0.319 2.679 4.844 2.489 0.138 2.034 2.113 2.947 4.030 3.962 3.800 3.017 1.692 3.568 3.852 3.416 4.409 2.986 nan 5.294 4.605 1.865 2.717 1.925 1.641 3.147 4.323 1.266 0.829 2.978 2.383 0.511 1.381 2.751 2.679 2.200 1.882 0.870 1.916 848 chr14 105930839 105954748 + 0 NA promoter-TSS (NR_073085) promoter-TSS (NR_073085) 597 NR_073084 1397 Hs.534309 NM_001312 ENSG00000182809 CRIP2 CRIP|CRP2|ESP1 cysteine rich protein 2 protein-coding 5.261 2.997 4.115 2.413 2.147 1.202 3.440 0.574 0.181 1.945 0.849 5.477 8.147 2.577 0.109 2.148 4.648 1.005 1.945 5.754 5.629 3.941 3.414 0.594 0.519 2.393 3.730 3.059 6.714 1.473 1.496 0.973 1.787 3.730 1.936 0.562 0.399 0.641 0.370 10.244 1.471 1.030 0.792 3.440 5.477 0.825 1.561 0.672 0.062 2272 chr7 73118214 73137215 + 0 NA intron (NM_001165903, intron 1 of 9) intron (NM_001165903, intron 1 of 9) 2067 NR_036247 100422948 NR_036247 ENSG00000265724 MIR4284 mir-4284 microRNA 4284 ncRNA nan 0.795 1.371 0.872 0.733 0.264 0.705 0.970 0.596 0.951 0.492 0.604 1.113 0.469 0.109 0.854 1.446 0.814 nan 0.810 0.884 1.934 0.553 0.307 0.344 1.338 nan 2.341 nan 2.182 2.137 0.451 0.679 1.978 3.402 0.699 0.993 1.462 0.772 0.701 0.816 0.785 1.352 0.705 0.604 1.552 1.593 0.177 0.293 965 chr16 33191857 33207406 + 0 NA Intergenic Intergenic -5952 NM_016212 24150 Hs.592038 NM_015369 ENSG00000183632 TP53TG3 P53TG3|TP53TG3A|TP53TG3E|TP53TG3F TP53 target 3 protein-coding 0.369 0.425 0.334 0.123 2.891 1.433 0.156 0.116 0.052 0.195 0.124 0.701 2.597 0.639 0.095 0.239 0.142 0.127 0.199 0.829 0.726 1.001 0.246 0.265 0.219 0.415 0.527 4.407 4.861 0.359 0.152 0.123 0.179 0.043 0.081 0.076 0.118 0.210 0.249 4.359 0.052 0.043 0.046 0.156 0.701 0.100 1.538 0.038 0.064 2486 chr9 14336924 14355612 + 0 NA intron (NM_001190738, intron 1 of 8) CpG -32223 NM_005596 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding nan nan 2.491 0.962 0.567 0.306 0.511 1.018 0.163 1.392 0.976 1.259 2.163 0.179 0.080 0.228 0.115 1.137 1.853 1.460 1.264 2.188 0.752 0.194 0.189 47.709 48.713 0.698 0.683 0.341 0.271 0.288 0.421 0.535 0.375 0.184 0.454 8.146 4.948 2.067 0.081 0.133 0.166 0.511 1.259 0.041 0.223 0.063 0.053 285 chr1 212683685 212704465 + 0 NA Intergenic MIRc|SINE|MIR -24961 NR_125985 101929565 NR_125985 ENSG00000228067 LINC01740 - long intergenic non-protein coding RNA 1740 ncRNA 1.738 1.758 2.357 0.282 0.553 0.387 0.402 0.248 0.070 0.293 0.201 0.270 nan 0.062 0.132 0.430 0.333 0.622 1.272 0.607 0.648 nan 0.279 0.375 0.503 0.341 nan 0.423 0.464 2.110 2.335 0.135 0.166 0.410 0.749 1.574 5.140 0.564 0.588 0.302 0.043 0.028 0.118 0.402 0.270 0.444 0.123 0.033 1.768 2270 chr7 66642039 66660455 + 0 NA intron (NM_018264, intron 14 of 15) intron (NM_018264, intron 14 of 15) -71863 NR_039794 100616331 NR_039794 ENSG00000264494 MIR4650-2 - microRNA 4650-2 ncRNA nan nan nan 0.441 0.624 0.235 0.548 2.003 0.497 0.350 0.334 0.409 0.518 0.071 0.173 1.100 1.495 1.024 0.901 0.543 0.519 8.092 2.978 0.490 0.415 0.948 1.312 1.608 1.876 1.224 1.241 0.418 0.972 3.694 4.561 0.541 1.252 3.532 1.621 0.052 0.204 1.112 0.461 0.548 0.409 0.206 1.028 0.495 0.296 1064 chr17 37924368 37959165 + 0 NA intron (NM_001284515, intron 5 of 7) intron (NM_001284515, intron 5 of 7) -7288 NM_001284516 22806 Hs.371680 NM_012481 ENSG00000161405 IKZF3 AIO|AIOLOS|ZNFN1A3 IKAROS family zinc finger 3 protein-coding nan 1.167 0.627 0.156 1.504 0.744 0.505 0.095 0.118 0.226 0.239 1.025 1.246 0.031 0.085 0.522 0.657 0.240 0.577 nan 0.886 0.374 0.178 0.673 0.710 0.193 0.341 1.541 1.170 nan 0.170 0.429 0.624 0.458 0.590 0.322 0.513 1.034 0.779 3.151 0.841 0.090 0.391 0.505 1.025 0.111 0.023 0.189 0.177 721 chr13 72425118 72454466 + 0 NA intron (NM_080760, intron 2 of 8) CpG 1538 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding nan 1.135 1.405 0.370 2.034 1.114 3.677 0.063 0.049 0.321 0.212 0.375 2.999 0.122 0.078 0.900 1.296 0.458 0.826 4.728 4.470 nan 0.733 0.179 0.221 1.224 1.480 0.561 0.627 nan 7.642 0.314 0.548 3.120 2.508 3.824 nan 0.566 0.261 0.136 0.167 0.896 7.000 3.677 0.375 1.012 0.654 0.114 1.610 143 chr1 72741796 72752619 + 0 NA intron (NM_173808, intron 1 of 6) intron (NM_173808, intron 1 of 6) 1070 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding nan 1.054 1.328 1.596 1.928 1.068 1.612 0.584 0.179 1.565 1.118 3.418 6.590 0.521 0.110 1.677 2.652 0.869 1.527 8.424 nan 7.808 2.660 3.570 3.600 5.816 nan 3.057 4.956 2.277 3.310 0.284 1.021 1.383 0.621 1.778 2.679 2.356 1.423 4.197 1.734 0.423 1.036 1.612 3.418 0.081 0.702 0.539 0.809 1873 chr3 189465227 189483959 + 0 NA intron (NM_001329964, intron 3 of 13) intron (NM_001329964, intron 3 of 13) -32856 NM_001114982 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 1.053 1.250 0.812 0.119 0.418 0.315 0.233 0.179 0.163 0.200 0.203 0.083 0.605 0.029 0.073 0.275 0.127 0.221 0.594 0.320 0.391 4.428 1.291 0.317 0.261 0.189 0.310 0.399 0.466 0.585 0.263 0.094 0.141 0.605 0.536 0.286 0.648 0.647 0.469 0.051 0.056 0.125 0.106 0.233 0.083 0.031 0.027 0.021 0.151 85 chr1 36232640 36236754 + 0 NA intron (NM_001330490, intron 1 of 24) MER96B|DNA|hAT 854 NM_001330490 63967 Hs.175613 NM_022111 ENSG00000092853 CLSPN - claspin protein-coding 4.640 nan 3.873 6.717 2.993 1.904 2.142 1.751 0.359 2.803 1.491 6.654 8.662 2.977 0.164 4.218 3.313 4.155 5.301 7.782 6.556 nan 2.193 5.731 5.358 3.829 5.145 10.343 15.809 nan 5.234 3.632 5.256 2.619 2.877 5.886 4.824 2.718 nan 3.573 2.403 0.372 1.756 2.142 6.654 0.450 1.745 1.475 1.435 15 chr1 6319302 6349902 + 0 NA intron (NM_181866, intron 8 of 8) intron (NM_181866, intron 8 of 8) -13567 NM_207370 387509 Hs.531581 NM_207370 ENSG00000158292 GPR153 PGR1 G protein-coupled receptor 153 protein-coding 2.365 nan 2.385 1.652 0.809 0.403 0.807 0.195 0.063 0.154 0.167 0.638 1.111 0.301 0.109 1.716 2.590 0.461 0.678 1.712 1.532 0.707 0.391 0.909 1.001 0.781 nan nan 9.310 nan 0.575 1.191 1.929 0.317 0.357 1.084 2.008 0.427 0.415 0.500 1.479 0.031 0.495 0.807 0.638 1.207 1.299 1.423 0.897 911 chr16 428210 434995 + 0 NA promoter-TSS (NR_024453) promoter-TSS (NR_024453) 348 NM_021259 58986 Hs.288940 NM_021259 ENSG00000129925 TMEM8A M83|TMEM6|TMEM8 transmembrane protein 8A protein-coding 1.951 nan 3.348 3.059 2.080 1.227 1.808 1.023 0.144 1.208 0.616 4.748 4.859 1.262 0.055 2.933 4.284 1.221 1.727 2.146 1.886 nan 1.725 3.275 3.390 1.289 nan 4.104 4.901 1.519 1.129 1.100 2.175 1.777 1.486 0.997 1.728 1.784 1.121 2.973 11.269 0.437 0.537 1.808 4.748 0.774 1.073 1.044 0.345 900 chr15 90559775 90619449 + 0 NA intron (NM_198526, intron 1 of 4) intron (NM_198526, intron 1 of 4) 39625 NR_036135 100422841 NR_036135 ENSG00000265871 MIR3174 - microRNA 3174 ncRNA nan nan nan 0.979 1.684 0.895 0.337 0.275 0.214 0.913 0.520 2.567 2.545 0.085 0.078 1.666 2.166 0.355 0.659 1.228 1.224 nan 0.441 5.274 5.601 0.405 0.639 3.162 3.191 nan 0.356 1.508 2.274 0.684 0.636 0.332 nan 0.475 0.380 1.002 1.308 0.137 0.174 0.337 2.567 0.225 0.552 1.566 0.137 341 chr10 11476406 11488437 + 0 NA Intergenic MER41B|LTR|ERV1 91858 NM_001080491 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding nan 0.486 0.541 0.176 0.299 0.160 0.192 0.133 0.121 0.079 0.083 0.080 0.213 0.045 0.102 0.429 0.311 0.221 0.281 0.241 0.258 6.112 1.606 0.179 0.179 0.188 0.334 0.165 0.187 0.147 0.070 0.123 0.144 0.372 0.454 0.097 0.122 0.657 0.417 0.393 0.097 0.055 0.053 0.192 0.080 0.032 0.034 0.016 0.010 2409 chr8 108167442 108176304 + 0 NA Intergenic Intergenic 176870 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 1.562 nan nan 8.556 0.371 0.199 0.361 0.219 0.145 0.760 0.458 0.040 4.372 0.073 0.127 0.414 0.361 0.301 0.275 1.467 1.749 8.074 3.970 0.776 0.543 3.470 nan 4.713 nan nan 0.238 0.153 0.328 7.206 9.950 0.256 nan 2.298 1.211 1.114 0.110 1.691 0.270 0.361 0.040 0.055 0.264 0.079 0.028 1078 chr17 41620100 41623889 + 0 NA 3' UTR (NM_001322219, exon 24 of 24) 3' UTR (NM_001322219, exon 24 of 24) 1311 NM_001261438 2118 Hs.434059 NM_001986 ENSG00000175832 ETV4 E1A-F|E1AF|PEA3|PEAS3 ETS variant 4 protein-coding 2.643 2.259 nan 0.905 1.147 0.804 1.225 1.478 0.128 0.203 0.189 0.063 3.780 3.112 0.074 6.602 7.277 11.027 7.493 0.430 nan 3.327 1.233 1.506 1.257 0.474 1.207 0.964 nan 0.747 0.281 0.876 0.656 1.389 2.083 0.213 0.249 0.377 0.495 0.059 0.164 0.126 0.042 1.225 0.063 0.155 2.176 0.026 0.034 2225 chr7 7858667 7870594 + 0 NA intron (NM_001302348, intron 3 of 3) intron (NM_001302348, intron 3 of 3) -106392 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 1.472 1.128 1.435 0.354 0.655 0.351 1.342 0.157 0.121 0.600 0.252 2.418 nan 0.082 0.143 0.678 0.541 0.253 nan 4.914 5.912 nan 0.684 0.445 0.481 1.089 1.267 nan 0.853 0.479 0.258 0.178 0.359 1.329 2.017 0.471 1.437 0.898 0.636 1.587 0.422 0.289 0.220 1.342 2.418 0.089 0.196 0.084 0.199 2215 chr7 2028016 2043575 + 0 NA intron (NM_001013836, intron 14 of 18) intron (NM_001013836, intron 14 of 18) -55609 NM_001304525 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 MAD1 mitotic arrest deficient like 1 protein-coding 1.471 1.699 2.228 0.787 0.346 0.134 0.971 0.206 0.088 0.141 0.126 1.489 nan 0.091 0.088 0.521 0.749 0.213 nan 5.065 4.104 nan 0.564 0.718 0.783 0.472 0.798 nan 6.333 0.409 0.338 0.282 0.376 0.300 0.334 0.572 1.010 0.608 0.448 4.567 0.314 0.067 0.215 0.971 1.489 0.126 2.302 0.044 0.285 1200 chr18 52946803 52961028 + 0 NA intron (NM_001243228, intron 8 of 19) intron (NM_001243228, intron 8 of 19) 15937 NM_001243236 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding nan 1.037 0.863 0.143 0.438 0.214 0.287 0.478 0.057 0.198 0.214 0.461 0.289 0.186 0.082 0.437 0.430 0.321 0.672 1.171 1.365 0.694 0.373 0.573 0.490 1.174 1.344 0.625 0.521 1.577 1.030 0.190 0.330 0.617 0.934 0.404 0.657 nan 1.895 0.087 0.176 0.067 0.261 0.287 0.461 0.230 0.107 0.052 0.155 832 chr14 96732096 96742446 + 0 NA Intergenic Intergenic 14724 NM_000710 623 Hs.525572 NM_000710 ENSG00000100739 BDKRB1 B1BKR|B1R|BDKRB2|BKB1R|BKR1|BRADYB1 bradykinin receptor B1 protein-coding 1.853 0.921 nan 0.336 0.397 0.141 0.446 2.186 0.244 0.124 0.093 0.798 2.845 0.074 0.115 0.347 0.226 0.278 0.907 1.633 1.600 0.864 0.252 0.583 0.606 0.726 0.952 1.432 1.371 2.467 2.297 0.241 0.334 1.357 1.306 0.150 0.255 nan 0.776 0.322 0.345 0.189 0.071 0.446 0.798 0.393 3.215 0.067 0.095 2430 chr8 135279892 135302299 + 0 NA Intergenic MLT1C|LTR|ERVL-MaLR -319219 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA nan 0.725 1.376 1.051 2.201 1.367 0.232 0.087 0.045 0.332 0.195 0.368 1.362 0.020 0.078 0.286 0.177 0.224 0.268 0.576 0.725 10.430 2.196 nan 0.541 0.117 0.224 0.339 0.779 0.337 0.188 0.148 0.246 1.048 0.704 0.141 0.218 2.406 1.192 0.127 0.131 0.264 0.333 0.232 0.368 0.031 0.172 0.035 0.022 256 chr1 183619256 183625900 + 0 NA promoter-TSS (NM_203454) promoter-TSS (NM_203454) -130 NM_203454 403314 Hs.97335 NM_203454 ENSG00000173627 APOBEC4 C1orf169 apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4 protein-coding nan nan 2.213 0.187 1.647 1.010 0.232 0.531 0.097 2.475 1.206 0.144 0.592 0.115 0.125 7.122 14.203 8.747 6.723 0.953 nan 3.230 1.653 nan 6.928 3.429 4.862 2.134 3.131 2.727 3.037 6.966 11.203 5.307 3.748 0.980 nan 1.778 1.562 0.084 0.343 1.263 0.036 0.232 0.144 0.467 0.214 8.439 0.816 213 chr1 156771073 156786583 + 0 NA intron (NM_001161441, intron 7 of 8) intron (NM_001161441, intron 7 of 8) -6714 NM_001007792 4914 Hs.406293 NM_002529 ENSG00000198400 NTRK1 MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA neurotrophic receptor tyrosine kinase 1 protein-coding nan nan 2.525 0.406 0.447 0.187 0.651 2.068 0.425 0.435 0.284 0.185 0.741 0.196 0.119 0.826 0.920 0.678 1.021 1.149 nan 1.116 0.381 0.354 0.444 1.601 2.137 1.916 2.766 1.910 2.280 1.309 1.373 1.366 1.488 3.352 8.031 1.487 1.003 3.870 4.178 0.431 0.187 0.651 0.185 1.035 0.188 0.358 3.716 175 chr1 150668384 150677972 + 0 NA intron (NM_032132, intron 13 of 14) L1MB8|LINE|L1 -3506 NM_018178 55204 Hs.203699 NM_018178 ENSG00000143457 GOLPH3L GPP34R golgi phosphoprotein 3 like protein-coding nan nan 1.899 1.341 0.927 0.411 0.428 0.285 0.146 1.194 0.610 1.208 3.337 0.498 0.126 4.797 5.105 1.835 1.585 2.481 nan 3.221 2.492 1.837 1.862 1.064 1.299 2.194 2.824 1.122 0.710 5.222 9.024 1.146 0.847 1.803 2.966 1.431 0.987 0.236 1.284 0.129 0.588 0.428 1.208 0.050 1.036 7.619 0.373 597 chr12 31876209 31928611 + 0 NA Intergenic LTR8|LTR|ERV1 -20302 NR_103522 196394 Hs.585084 NM_001113402 ENSG00000151743 AMN1 - antagonist of mitotic exit network 1 homolog protein-coding 1.514 nan 1.513 2.254 1.063 0.586 1.716 0.234 0.086 0.407 0.319 0.989 1.694 0.374 0.117 0.797 0.695 0.588 1.623 1.409 1.100 2.322 0.613 2.758 2.896 0.605 0.928 0.854 1.079 0.610 0.393 0.585 0.669 5.555 12.229 0.465 0.943 1.127 0.754 0.321 0.623 0.874 1.212 1.716 0.989 0.250 1.641 0.390 0.169 1471 chr2 121704992 121722826 + 0 NA intron (NM_005270, intron 4 of 12) L2a|LINE|L2 159042 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 0.922 nan nan 0.059 0.186 0.091 0.395 0.148 0.054 0.080 0.097 0.060 0.542 0.061 0.087 0.412 0.496 0.353 0.424 0.370 0.445 0.237 0.117 0.588 0.497 0.454 0.737 1.470 1.166 0.618 0.601 0.307 0.386 0.072 0.082 0.610 1.048 0.549 0.393 3.632 0.190 0.027 0.044 0.395 0.060 0.158 0.025 0.051 0.331 1721 chr22 36826448 36832822 + 0 NA Intergenic Intergenic -45523 NM_002473 4627 Hs.474751 NM_002473 ENSG00000100345 MYH9 BDPLT6|DFNA17|EPSTS|FTNS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA myosin heavy chain 9 protein-coding 1.232 nan 0.998 4.270 7.261 4.203 0.707 0.205 0.075 1.706 1.045 7.059 5.181 0.288 0.164 0.345 0.528 0.378 0.908 4.543 4.892 7.177 2.234 0.278 0.357 0.378 nan 10.829 8.601 nan 0.970 0.357 0.483 2.579 1.969 0.377 1.532 2.504 1.100 6.473 2.658 0.593 0.062 0.707 7.059 0.488 4.867 0.123 0.174 1916 chr4 106551303 106560075 + 0 NA intron (NM_001242729, intron 4 of 13) intron (NM_001242729, intron 4 of 13) 72941 NR_046840 100874374 Hs.668908 NR_046840 ENSG00000249885 ARHGEF38-IT1 - ARHGEF38 intronic transcript 1 ncRNA 0.624 nan nan 0.650 0.378 0.276 0.233 0.265 0.091 0.180 0.131 0.233 0.907 0.025 0.078 1.061 1.347 6.977 11.721 0.270 0.261 0.140 0.048 0.211 0.196 0.656 nan 0.568 0.512 0.368 0.190 0.612 2.470 0.186 0.225 0.381 nan 0.486 0.333 0.019 0.072 0.033 0.054 0.233 0.233 0.011 0.209 2.160 0.098 460 chr11 63822651 63876200 + 0 NA intron (NM_014067, intron 3 of 10) intron (NM_014067, intron 3 of 10) -21937 NM_013280 23769 Hs.584876 NM_013280 ENSG00000126500 FLRT1 SPG68 fibronectin leucine rich transmembrane protein 1 protein-coding nan 1.797 0.880 1.011 1.734 0.804 0.874 0.424 0.093 0.654 0.478 0.530 3.901 0.183 0.101 0.913 1.363 0.325 0.461 2.562 2.461 1.709 0.595 0.527 0.572 0.601 1.036 1.397 1.769 1.034 0.916 0.902 0.967 1.139 0.955 0.399 1.096 1.820 0.941 5.898 1.422 0.229 0.121 0.874 0.530 0.580 0.732 0.259 0.237 667 chr12 116551625 116573261 + 0 NA intron (NM_015335, intron 2 of 30) intron (NM_015335, intron 2 of 30) 24016 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA nan nan 0.957 0.311 0.485 0.199 1.025 0.637 0.165 0.441 0.300 0.515 0.539 0.281 0.167 0.430 0.424 0.255 0.424 nan nan nan 0.200 0.520 0.529 2.202 2.881 nan nan 1.112 0.809 0.283 0.445 2.809 4.612 1.048 1.704 nan 0.852 1.406 2.043 0.998 0.124 1.025 0.515 0.081 0.361 0.219 0.442 533 chr11 126973474 126978702 + 0 NA Intergenic Intergenic 39191 NR_120578 101929473 Hs.737523 NR_120578 ENSG00000255087 LOC101929473 - uncharacterized LOC101929473 ncRNA 1.057 4.185 2.174 4.658 9.608 4.803 7.088 0.005 0.031 0.536 0.289 8.867 11.739 0.085 0.085 1.776 2.300 0.157 0.390 13.047 12.102 9.861 2.432 0.158 0.116 0.184 0.353 10.526 10.076 3.319 3.350 2.420 4.241 6.284 4.672 0.378 nan 4.265 2.472 6.778 6.097 1.729 1.441 7.088 8.867 0.596 4.265 0.322 1780 chr3 97534293 97558647 + 0 NA intron (NM_153605, intron 1 of 21) intron (NM_153605, intron 1 of 21) 5586 NM_153605 131544 Hs.733378 NM_153605 ENSG00000080200 CRYBG3 DKFZp667G2110|vlAKAP crystallin beta-gamma domain containing 3 protein-coding 1.558 1.085 1.768 0.320 0.625 0.291 0.316 0.323 0.092 0.842 0.496 0.840 0.632 0.227 0.101 0.358 0.216 0.440 0.610 2.611 2.214 0.764 0.238 0.585 0.557 1.914 2.509 0.963 1.246 8.045 7.652 0.135 0.282 1.172 1.352 1.570 2.198 1.228 0.693 0.199 0.903 0.410 0.428 0.316 0.840 0.690 1.351 0.076 1.686 1824 chr3 156331480 156349511 + 0 NA Intergenic HERVL18-int|LTR|ERVL -51710 NM_015508 25976 Hs.744050 NM_015508 ENSG00000163659 TIPARP ARTD14|PARP7|pART14 TCDD inducible poly(ADP-ribose) polymerase protein-coding nan 1.260 0.737 1.105 0.891 0.426 0.693 0.297 0.090 0.397 0.312 0.529 0.597 0.103 0.087 0.309 0.265 0.392 1.084 0.469 0.655 4.177 0.621 0.296 0.285 0.281 nan 1.556 1.543 0.605 0.409 0.156 0.242 1.029 1.951 0.261 0.416 1.208 0.871 0.259 0.502 0.080 0.160 0.693 0.529 0.299 0.317 0.027 0.127 6 chr1 2395645 2415617 + 0 NA intron (NM_001303012, intron 1 of 21) intron (NM_001303012, intron 1 of 21) -2123 NM_001303013 9651 Hs.170156 NM_014638 ENSG00000149527 PLCH2 PLC-L4|PLC-eta2|PLCL4|PLCeta2 phospholipase C eta 2 protein-coding 2.257 nan 2.531 0.207 0.319 0.178 0.364 0.065 0.032 0.117 0.108 0.054 1.686 0.070 0.065 0.750 1.646 0.097 0.159 0.541 0.582 0.598 0.152 0.275 0.260 1.047 nan nan 0.545 nan 3.283 0.651 0.604 0.259 0.283 1.640 4.407 0.802 0.565 5.443 0.090 0.047 0.376 0.364 0.054 0.674 0.148 0.159 1.148 1986 chr5 70679897 70725022 + 0 NA intron (NR_134268, intron 2 of 2) (TA)n|Simple_repeat|Simple_repeat 30847 NR_003922 5370 Hs.742169 NM_031888 ENSG00000169040 PMCHL2 - pro-melanin concentrating hormone like 2 (pseudogene) pseudo 0.838 nan 0.751 0.347 0.795 0.384 0.188 0.106 0.093 1.115 0.787 0.203 0.628 0.055 0.143 0.304 0.326 0.187 0.309 0.344 0.462 nan 1.508 0.180 0.180 1.659 nan 0.689 0.711 0.811 0.547 0.221 0.365 4.613 6.117 0.213 0.538 2.102 1.009 0.053 0.645 1.939 0.120 0.188 0.203 0.158 0.650 0.219 0.099 1884 chr4 26228222 26250505 + 0 NA Intergenic MIRb|SINE|MIR -81969 NM_203283 3516 Hs.479396 NM_005349 ENSG00000168214 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 1.207 0.914 nan 1.826 1.282 0.588 0.963 0.108 0.080 1.140 0.621 2.667 2.524 0.044 0.082 0.343 0.145 0.219 0.337 1.797 1.802 1.999 0.598 0.288 0.252 0.899 1.162 2.071 2.167 2.450 2.396 0.135 0.305 1.018 1.124 0.724 1.409 nan 1.632 0.385 1.687 0.410 0.146 0.963 2.667 0.205 1.414 0.106 0.155 1015 chr17 7727306 7749156 + 0 NA Intergenic CpG -5004 NM_001080424 23135 Hs.223678 NM_001080424 ENSG00000132510 KDM6B JMJD3 lysine demethylase 6B protein-coding 3.952 1.883 2.521 2.050 4.037 1.888 2.302 1.299 0.111 1.142 0.574 2.368 6.240 3.976 0.130 2.847 4.184 2.852 4.778 5.418 4.318 4.506 2.536 4.970 5.481 2.296 3.021 5.638 8.395 1.779 2.443 1.115 1.780 2.490 2.246 4.614 7.601 1.407 0.791 2.643 2.976 0.468 1.372 2.302 2.368 1.149 3.217 1.086 2.291 1528 chr2 208327532 208340732 + 0 NA Intergenic Intergenic -60484 NM_134442 1385 Hs.516646 NM_004379 ENSG00000118260 CREB1 CREB|CREB-1 cAMP responsive element binding protein 1 protein-coding 0.985 nan 1.634 0.523 1.143 0.559 1.074 0.255 0.185 0.426 0.313 0.707 3.137 0.197 0.070 0.433 0.471 0.432 0.604 0.389 0.388 0.290 0.105 0.596 0.740 4.758 5.236 0.528 0.529 0.683 0.633 0.277 0.347 1.425 1.491 0.503 1.160 0.747 0.320 1.793 0.366 0.528 0.232 1.074 0.707 0.162 0.622 0.046 0.131 2279 chr7 74028863 74045775 + 0 NA Intergenic AluSz6|SINE|Alu -34672 NM_033000 2969 Hs.647041 NM_001518 ENSG00000263001 GTF2I BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6 general transcription factor IIi protein-coding nan 1.232 1.301 0.954 0.504 0.256 0.828 0.705 0.609 0.156 0.150 0.345 2.481 0.278 0.145 0.473 0.538 0.434 nan 1.202 1.158 1.339 0.366 0.227 0.230 0.442 nan 2.192 nan 2.785 3.097 0.325 0.357 1.016 1.134 2.729 6.042 1.074 0.763 1.784 2.364 0.266 3.761 0.828 0.345 1.087 0.090 0.087 1.552 1263 chr19 13017884 13031491 + 0 NA intron (NM_001105578, intron 2 of 5) intron (NM_001105578, intron 2 of 5) 5399 NM_001105578 256126 Hs.655173 NM_001105578 ENSG00000161860 SYCE2 CESC1 synaptonemal complex central element protein 2 protein-coding 3.189 2.585 5.624 5.268 3.141 1.436 0.862 0.271 0.261 1.834 1.130 10.108 3.480 0.247 0.103 0.891 1.979 0.604 0.824 11.023 12.422 8.347 3.152 0.830 0.744 1.700 2.411 8.639 10.014 3.088 2.797 0.410 0.481 2.370 2.160 2.156 6.249 3.863 1.952 8.217 3.477 0.883 1.945 0.862 10.108 0.664 1.063 0.181 1.431 2229 chr7 13755643 13768193 + 0 NA Intergenic MER103C|DNA|hAT-Charlie 264221 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding nan 1.055 nan 0.126 0.249 0.178 0.246 0.264 0.166 0.592 0.530 0.388 0.328 0.043 0.112 nan 0.291 0.356 0.352 0.342 0.551 0.755 0.212 0.342 0.425 4.432 4.978 0.426 0.377 1.101 0.613 0.126 0.078 1.511 1.301 0.132 0.240 0.654 0.593 0.040 0.128 0.290 0.451 0.246 0.388 0.117 0.108 0.039 0.051 689 chr12 133262147 133266391 + 0 NA promoter-TSS (NM_006231) promoter-TSS (NM_006231) 77 NM_018663 5827 Hs.430299 NM_018663 ENSG00000176894 PXMP2 PMP22 peroxisomal membrane protein 2 protein-coding 5.893 4.372 3.514 3.631 4.452 1.930 6.039 2.112 0.605 3.263 1.425 5.496 8.340 3.864 0.212 4.646 4.061 7.451 9.206 8.638 8.759 6.347 3.775 8.440 8.327 3.285 4.569 6.410 11.418 5.372 7.629 4.628 8.020 6.448 8.201 8.143 4.084 3.008 1.999 3.051 4.171 2.333 19.042 6.039 5.496 1.122 2.796 1.193 1.254 1267 chr19 13104024 13173869 + 0 NA intron (NM_001271043, intron 2 of 10) intron (NM_001271043, intron 2 of 10) 3551 NM_001271043 4784 Hs.257970 NM_002501 ENSG00000008441 NFIX CTF|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2 nuclear factor I X protein-coding 1.967 0.935 7.016 0.375 1.126 0.599 1.173 1.366 0.203 0.210 0.160 1.224 0.459 0.395 0.063 1.847 2.839 1.427 3.236 1.627 1.820 1.159 0.369 0.365 0.418 1.983 2.826 1.062 1.031 1.099 0.743 0.785 1.331 0.691 0.934 0.441 0.658 1.731 0.968 3.348 0.763 0.273 0.296 1.173 1.224 0.635 0.324 0.599 0.105 2553 chr9 130889046 130903396 + 0 NA Intergenic L1MB3|LINE|L1 5413 NR_024425 389791 Hs.632678 NM_001013652 ENSG00000232850 PTGES2-AS1 - PTGES2 antisense RNA 1 (head to head) ncRNA nan 1.749 3.208 2.308 1.670 0.952 1.189 0.550 0.124 1.067 0.540 1.463 3.273 1.021 0.087 1.455 1.498 1.536 2.497 2.416 2.719 nan 1.349 2.926 2.924 1.120 1.695 3.001 3.651 6.129 5.951 1.049 1.579 2.314 2.401 1.674 1.826 2.969 1.381 0.837 0.952 0.657 0.426 1.189 1.463 1.745 1.666 0.354 0.628 2426 chr8 128734377 128756397 + 0 NA intron (NR_117101, intron 1 of 1) intron (NR_117101, intron 1 of 1) 826 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility candidate 11 (non-protein coding) ncRNA 12.845 6.746 12.509 1.038 1.907 1.035 0.076 1.344 0.204 2.535 1.308 0.120 nan 1.339 0.124 9.004 10.657 2.952 4.798 1.017 0.847 3.075 1.050 nan nan 13.394 18.233 3.217 3.239 52.371 38.956 0.249 0.447 0.620 0.578 19.260 29.704 0.471 0.368 0.416 0.186 0.169 0.180 0.076 0.120 8.863 1.458 0.112 20.977 288 chr1 212869248 212874059 + 0 NA intron (NM_018664, intron 1 of 2) MIRb|SINE|MIR 1674 NM_018664 55509 Hs.62919 NM_018664 ENSG00000123685 BATF3 JDP1|JUNDM1|SNFT basic leucine zipper ATF-like transcription factor 3 protein-coding 1.761 1.543 1.511 0.717 1.397 0.620 0.612 0.948 0.234 0.549 0.309 0.491 nan 0.603 0.083 0.355 0.410 9.795 5.039 1.504 1.235 nan 0.263 2.126 2.409 0.913 nan 0.662 1.050 1.232 0.757 0.272 0.253 0.452 0.432 1.414 2.158 0.658 0.543 0.279 0.284 0.060 0.182 0.612 0.491 0.323 0.064 0.057 0.560 2587 chrX 38659797 38666462 + 0 NA promoter-TSS (NR_046706) promoter-TSS (NR_046706) 7 NR_046706 100874211 Hs.662789 NR_046706 MID1IP1-AS1 - MID1IP1 antisense RNA 1 ncRNA 6.369 4.672 4.279 5.739 6.298 3.216 4.932 3.696 0.412 3.413 1.803 3.399 12.995 3.141 0.085 1.972 3.028 3.509 5.197 8.658 6.497 8.360 3.368 10.065 10.440 3.895 5.047 7.858 10.946 11.545 16.663 5.746 9.026 7.491 5.223 8.044 10.154 2.673 1.225 2.539 2.307 1.861 3.594 4.932 3.399 1.388 2.145 5.019 4.481 2466 chr9 2014025 2018947 + 0 NA intron (NM_003070, intron 1 of 33) CpG 1267 NM_001289397 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 3.352 9.046 4.898 2.496 3.129 1.568 3.831 2.414 0.390 1.546 1.022 3.768 16.575 0.199 0.050 2.012 3.469 5.274 7.743 6.189 4.081 4.833 1.656 11.674 10.716 3.462 5.196 1.711 3.437 5.032 8.451 2.118 6.344 2.025 2.578 0.819 nan 3.122 2.547 0.406 7.772 0.542 4.545 3.831 3.768 2.388 1.867 2.653 0.725 1883 chr4 15470251 15498866 + 0 NA TTS (NM_001164720) TTS (NM_001164720) 13069 NM_020785 57545 Hs.590928 NM_020785 ENSG00000048342 CC2D2A JBTS9|MKS6 coiled-coil and C2 domain containing 2A protein-coding nan nan nan 0.256 0.131 0.073 0.405 1.670 0.190 0.203 0.184 0.205 0.509 0.049 0.075 0.427 0.259 0.613 0.561 0.486 0.511 1.004 0.442 0.546 0.499 1.101 1.474 0.371 0.435 1.594 1.351 0.360 0.419 0.214 0.262 1.170 4.604 nan 0.633 0.096 0.139 0.029 0.116 0.405 0.205 0.038 0.110 0.108 1.755 1717 chr22 33955403 33974150 + 0 NA intron (NM_004737, intron 6 of 15) intron (NM_004737, intron 6 of 15) -132121 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA nan 0.529 0.722 0.225 0.356 0.205 3.180 0.080 0.052 0.083 0.062 0.239 4.231 0.023 0.071 0.304 0.306 0.179 nan 0.292 0.336 2.340 1.100 0.088 0.109 0.139 nan 2.390 4.104 0.331 0.256 0.185 0.176 0.047 0.081 0.413 nan 0.558 0.494 0.032 1.924 0.021 0.119 3.180 0.239 0.010 0.054 0.068 0.379 1749 chr3 5017536 5029801 + 0 NA intron (NM_003670, intron 4 of 4) intron (NM_003670, intron 4 of 4) -2022 NR_037903 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 2.656 5.174 1.835 0.343 1.576 0.829 1.629 3.547 0.162 0.999 0.659 0.215 6.735 6.935 0.122 0.549 2.369 1.935 5.354 2.871 1.938 0.317 0.182 3.322 3.331 0.693 0.992 1.595 2.337 1.615 2.729 1.731 3.104 2.587 2.703 1.384 3.062 0.349 0.280 1.084 1.496 1.004 1.314 1.629 0.215 0.412 4.490 2.295 1.164 431 chr11 34615081 34623055 + 0 NA Intergenic Intergenic -23520 NM_001206615 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 0.586 0.940 nan 0.116 0.518 0.315 0.269 0.426 0.040 0.119 0.126 0.352 0.891 0.056 0.160 3.527 4.115 7.719 2.643 0.280 0.377 1.106 0.389 0.658 0.699 0.260 0.380 0.330 0.180 0.333 0.161 1.080 1.941 0.161 0.145 0.222 nan 0.654 0.476 0.076 0.095 0.048 0.040 0.269 0.352 0.024 0.127 0.871 0.078 1062 chr17 37718462 37736446 + 0 NA Intergenic L2c|LINE|L2 36721 NM_006160 4761 Hs.322431 NM_006160 ENSG00000171532 NEUROD2 NDRF|bHLHa1 neuronal differentiation 2 protein-coding nan 1.038 0.706 0.181 1.443 0.744 0.811 0.167 0.133 0.341 0.166 0.553 1.114 0.312 0.082 2.552 4.734 0.579 0.574 nan 1.201 0.863 0.417 0.839 0.945 1.255 2.135 1.364 2.804 nan 2.009 0.368 0.562 0.619 0.305 0.681 0.924 1.729 0.941 0.121 0.510 0.195 0.089 0.811 0.553 0.678 0.300 0.116 0.214 549 chr12 6676363 6678418 + 0 NA 5' UTR (NM_001258309, exon 1 of 17) 5' UTR (NM_001258309, exon 1 of 17) 108 NM_006170 4839 Hs.534334 NM_006170 ENSG00000111641 NOP2 NOL1|NOP120|NSUN1|p120 NOP2 nucleolar protein protein-coding 3.439 nan 3.411 8.637 3.365 2.484 3.680 0.913 0.233 2.802 1.603 3.198 9.618 6.066 0.260 3.129 3.234 5.027 7.854 7.173 6.787 11.517 4.181 7.387 8.026 5.864 7.479 5.288 6.442 5.652 5.950 3.027 5.390 4.744 5.764 5.995 7.827 2.247 0.970 3.185 3.484 1.116 2.571 3.680 3.198 6.798 0.905 1.251 2.419 1536 chr2 215481334 215496596 + 0 NA Intergenic Intergenic 114059 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA nan 1.141 nan 0.121 0.214 0.068 0.147 0.098 0.021 0.093 0.109 0.141 0.274 0.064 0.118 0.408 0.150 0.254 0.187 0.246 0.263 0.157 0.102 0.201 0.197 2.385 2.980 0.404 nan 0.920 0.690 0.134 0.249 0.053 0.060 2.002 5.992 0.257 0.322 0.025 0.047 0.018 0.046 0.147 0.141 0.070 0.027 0.037 1.857 1431 chr2 44160694 44176630 + 0 NA intron (NM_133259, intron 23 of 37) intron (NM_133259, intron 23 of 37) 54482 NM_133259 10128 Hs.368084 NM_133259 ENSG00000138095 LRPPRC CLONE-23970|GP130|LRP130|LSFC leucine rich pentatricopeptide repeat containing protein-coding 1.117 nan 0.977 0.222 0.440 0.260 0.233 0.329 0.081 0.373 0.336 0.668 1.198 0.204 0.119 0.582 0.495 5.011 3.718 nan 1.502 6.430 2.879 0.692 0.638 0.802 1.057 0.545 0.648 1.105 0.609 0.413 0.792 0.338 0.344 0.890 nan nan 0.515 0.070 0.586 0.036 0.196 0.233 0.668 0.085 0.090 0.367 0.355 2200 chr6 161854320 161866929 + 0 NA intron (NM_013987, intron 8 of 10) intron (NM_013987, intron 8 of 10) -31385 NR_134593 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 0.899 nan 0.708 0.125 2.133 1.311 0.488 1.818 0.458 0.297 0.162 0.269 0.242 0.120 0.082 2.172 3.135 7.507 8.842 0.369 0.309 3.589 1.454 0.611 0.643 0.093 0.239 0.202 0.248 nan 0.403 1.327 1.982 1.332 1.428 0.132 0.178 1.312 0.858 0.027 0.028 0.152 0.019 0.488 0.269 0.453 1.591 1.702 0.036 1133 chr17 78489653 78527574 + 0 NA Intergenic AluSq|SINE|Alu -10012 NM_020761 57521 Hs.133044 NM_020761 ENSG00000141564 RPTOR KOG1|Mip1 regulatory associated protein of MTOR complex 1 protein-coding 1.713 1.320 1.590 0.639 0.607 0.322 0.521 0.235 0.171 0.305 0.243 0.615 1.005 0.326 0.144 0.987 0.849 0.632 0.874 1.051 1.078 1.744 0.675 0.866 0.940 nan 1.354 1.531 2.169 1.651 1.218 0.729 1.036 0.404 0.602 2.345 5.619 nan 0.688 0.122 0.434 0.075 0.688 0.521 0.615 0.363 0.735 0.094 2.992 524 chr11 118961843 118966239 + 0 NA TTS (NM_002105) TTS (NM_002105) 2136 NM_002105 3014 Hs.477879 NM_002105 ENSG00000188486 H2AFX H2A.X|H2A/X|H2AX H2A histone family member X protein-coding 3.348 3.387 3.606 4.536 4.220 1.914 2.618 0.548 2.545 1.845 5.349 10.144 3.705 0.159 6.383 7.565 4.151 6.379 7.024 6.519 8.366 2.771 7.306 6.170 3.999 5.672 6.153 6.260 4.704 7.883 7.877 16.894 3.819 3.655 4.480 4.658 2.410 1.660 4.568 4.464 1.005 4.499 2.618 5.349 0.726 2.350 3.578 1.463 1236 chr18 76733414 76763882 + 0 NA intron (NM_171999, intron 1 of 2) intron (NM_171999, intron 1 of 2) 8373 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding nan nan 0.717 2.046 0.485 0.337 1.142 0.042 0.048 0.196 0.130 4.181 4.821 0.071 0.067 0.260 0.126 0.356 0.635 2.075 nan 1.681 0.561 0.140 0.120 0.078 0.132 1.772 nan 0.292 0.144 0.052 0.088 0.635 0.829 0.087 0.091 0.397 0.272 0.036 0.035 0.091 0.955 1.142 4.181 0.054 0.016 0.028 1747 chr22 50351540 50364780 + 0 NA TTS (NM_001001852) TTS (NM_001001852) 1646 NR_106879 102465493 NR_106879 ENSG00000276753 MIR6821 hsa-mir-6821 microRNA 6821 ncRNA 1.716 1.741 nan 1.488 2.514 1.070 4.598 1.478 0.096 1.386 0.572 2.877 2.833 1.611 0.123 1.755 2.334 2.086 4.533 2.429 2.285 1.690 0.684 3.248 3.453 0.602 1.062 2.412 4.028 2.256 2.357 0.899 1.658 2.549 3.236 1.488 1.715 1.803 0.960 0.954 1.027 0.738 1.291 4.598 2.877 0.911 2.776 0.411 0.693 1638 chr20 55204150 55217935 + 0 NA intron (NM_003222, intron 5 of 6) MER2|DNA|TcMar-Tigger 6684 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 2.623 2.512 6.820 0.051 0.143 0.046 0.094 0.043 0.116 0.022 0.066 0.050 2.228 0.369 0.115 1.304 nan 1.874 2.246 0.170 0.174 0.100 0.071 0.469 0.495 0.148 0.194 0.108 0.144 0.678 0.609 1.423 3.551 0.083 0.059 0.141 0.194 0.174 0.289 0.277 0.349 0.014 0.052 0.094 0.050 0.141 0.037 0.696 0.036 1105 chr17 62499092 62505028 + 0 NA promoter-TSS (NM_001320597) promoter-TSS (NM_001320597) 14 NM_001320597 1655 Hs.279806 NM_004396 ENSG00000108654 DDX5 G17P1|HLR1|HUMP68|p68 DEAD-box helicase 5 protein-coding 7.494 nan 5.106 6.987 8.212 4.819 4.431 4.608 0.517 3.971 1.722 5.670 14.023 5.956 0.167 9.537 10.470 8.160 10.955 12.071 10.897 8.452 5.154 24.737 25.025 4.246 nan 9.935 14.405 11.833 13.731 4.470 8.124 7.483 7.191 7.221 7.312 3.611 2.031 2.035 4.407 1.522 3.169 4.431 5.670 1.213 3.046 2.391 2.212 1701 chr22 19465004 19468836 + 0 NA promoter-TSS (NM_001178010) promoter-TSS (NM_001178010) -182 NM_005659 7353 Hs.474213 NM_005659 ENSG00000070010 UFD1L UFD1 ubiquitin fusion degradation 1 like (yeast) protein-coding 5.102 nan 3.972 4.037 5.666 3.196 3.373 4.890 0.380 2.859 0.972 4.599 8.020 3.941 0.090 8.730 7.006 8.115 11.295 7.397 8.687 7.404 7.266 16.447 17.457 5.570 7.083 8.183 12.089 9.929 9.837 5.932 7.801 8.172 11.845 7.649 4.915 6.493 3.990 1.861 2.530 1.689 1.754 3.373 4.599 1.427 2.812 1.239 1.388 804 chr14 65005636 65019444 + 0 NA Intergenic Intergenic -4080 NM_172365 145376 Hs.144696 NM_172365 ENSG00000165807 PPP1R36 C14orf50 protein phosphatase 1 regulatory subunit 36 protein-coding nan nan 7.864 2.478 2.424 1.327 0.567 0.434 0.260 0.611 0.438 1.890 1.455 1.255 0.194 1.211 1.170 0.331 0.344 2.886 2.409 2.616 0.669 nan 5.229 0.397 0.695 4.121 nan 2.949 2.497 0.993 1.133 5.039 5.621 0.332 0.788 2.611 1.366 0.745 1.455 1.282 2.706 0.567 1.890 0.971 1.344 0.631 0.195 1801 chr3 128199824 128217340 + 0 NA intron (NR_125398, intron 1 of 2) CpG-18893 536 NR_125398 101927167 Hs.287582 NR_125398 GATA2-AS1 - GATA2 antisense RNA 1 ncRNA 2.973 nan 1.756 0.838 0.812 0.314 0.827 1.486 0.260 0.744 0.302 1.401 1.104 0.990 0.064 2.412 2.220 3.141 4.119 2.074 1.426 3.790 1.093 1.044 1.123 1.689 nan 1.172 2.038 1.499 1.083 3.971 8.553 1.163 1.072 0.336 0.476 1.022 0.678 1.139 0.609 0.218 1.874 0.827 1.401 1.069 1.242 3.080 0.057 1690 chr21 43474081 43501377 + 0 NA intron (NM_001199528, intron 1 of 22) intron (NM_001199528, intron 1 of 22) -3697 NM_001004416 89766 Hs.242520 NM_173568 ENSG00000177398 UMODL1 - uromodulin like 1 protein-coding nan 1.659 1.644 0.653 1.004 0.468 0.417 0.170 0.047 0.127 0.105 1.480 6.460 0.052 0.066 2.311 2.991 1.370 2.394 2.050 1.595 nan 0.280 1.166 1.335 0.461 nan 2.840 4.162 1.027 1.156 2.171 3.207 0.923 0.906 0.405 0.593 1.004 0.740 4.790 1.680 0.175 0.079 0.417 1.480 0.916 0.067 2.226 0.131 1101 chr17 58467400 58471379 + 0 NA 5' UTR (NM_032582, exon 1 of 34) 5' UTR (NM_032582, exon 1 of 34) 197 NM_032582 84669 Hs.132868 NM_032582 ENSG00000170832 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 7.503 5.097 5.311 10.012 6.366 3.598 4.401 10.899 0.885 3.854 1.694 5.862 13.286 7.373 0.181 8.696 10.005 5.881 8.949 8.905 7.101 9.425 3.974 nan 11.849 5.772 6.528 11.858 20.324 11.420 11.899 4.354 8.883 6.931 7.672 6.800 10.114 3.328 1.848 2.203 6.436 1.893 3.455 4.401 5.862 1.860 4.564 6.898 3.985 1116 chr17 73891543 73914301 + 0 NA Intergenic AluSx|SINE|Alu -1741 NM_032478 64978 Hs.442609 NM_032478 ENSG00000204316 MRPL38 HSPC262|L38MT|MRP-L3|MRP-L38|RPML3 mitochondrial ribosomal protein L38 protein-coding 2.074 1.613 1.713 1.429 1.984 1.077 1.104 0.582 0.368 1.801 1.256 2.122 3.992 1.164 0.147 2.013 2.869 1.173 1.932 3.407 2.796 3.243 1.147 2.258 2.253 nan 1.975 4.143 4.892 2.518 2.515 0.917 1.525 2.641 2.018 2.040 2.579 nan 0.900 0.769 2.640 0.569 0.451 1.104 2.122 0.341 2.172 0.430 0.753 230 chr1 164654500 164709535 + 0 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 61861 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 1.350 nan 1.380 0.283 0.427 0.207 0.675 0.467 0.096 0.256 0.247 0.394 0.505 0.048 0.108 0.619 0.723 0.883 2.507 0.529 nan 1.346 0.489 0.191 0.233 2.779 3.369 0.917 nan 0.492 0.342 0.532 0.589 0.460 0.489 0.602 0.989 1.173 0.814 0.094 0.374 0.078 0.816 0.675 0.394 0.071 0.189 0.126 0.353 1170 chr18 34829177 34850639 + 0 NA intron (NM_001025087, intron 10 of 12) intron (NM_001025087, intron 10 of 12) -14515 NR_134588 105372068 Hs.569903 NR_134588 ENSG00000267202 LOC105372068 - uncharacterized LOC105372068 ncRNA nan 0.746 1.525 0.244 0.285 0.149 0.558 0.042 0.045 0.069 0.081 0.681 1.692 0.116 0.061 3.958 4.207 0.300 0.243 0.850 0.829 2.074 0.741 0.429 0.413 0.338 0.523 nan 2.311 0.677 0.725 0.890 1.101 0.488 0.464 0.288 0.377 1.611 1.372 0.108 0.237 0.114 0.248 0.558 0.681 0.223 0.033 0.208 0.086 59 chr1 26785940 26801702 + 0 NA non-coding (NR_125952, exon 1 of 4) non-coding (NR_125952, exon 1 of 4) 207 NR_125953 101928324 Hs.663256 NR_125952 LOC101928324 - uncharacterized LOC101928324 ncRNA 3.347 2.488 nan 4.917 4.576 2.410 2.623 0.869 0.133 1.507 0.890 2.735 6.895 1.755 0.110 2.649 3.070 1.849 2.351 9.033 8.972 4.020 1.698 3.159 3.241 4.099 5.248 3.993 4.950 3.806 4.470 1.639 2.794 2.987 2.710 3.852 6.258 4.082 1.738 4.845 3.259 1.053 2.064 2.623 2.735 0.813 1.165 0.993 2.541 823 chr14 89644213 89660103 + 0 NA intron (NM_005197, intron 4 of 5) intron (NM_005197, intron 4 of 5) 231296 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 2.552 1.132 nan 1.437 0.795 0.465 1.077 0.345 0.152 1.090 0.480 2.752 1.137 0.094 0.101 0.874 1.419 0.246 0.495 1.711 1.903 2.251 2.716 0.471 0.526 2.863 3.766 1.513 2.531 1.858 1.970 0.194 0.394 3.454 3.192 0.462 0.662 nan 1.513 0.325 0.209 1.179 2.326 1.077 2.752 0.082 0.095 0.087 0.171 1363 chr19 49989991 49993930 + 0 NA intron (NM_012423, intron 1 of 7) AluSx1|SINE|Alu 1095 NR_026712 728658 Hs.645344 NR_026712 ENSG00000236552 RPL13AP5 RPL13A_8_1086|bA196N24.2 ribosomal protein L13a pseudogene 5 pseudo 6.568 3.210 4.710 3.743 8.405 4.548 3.859 2.269 0.285 2.580 1.754 5.436 7.053 7.232 0.328 7.035 6.928 8.243 10.418 7.789 8.488 14.133 7.080 18.507 18.764 5.892 9.405 10.187 10.813 14.559 16.635 4.858 9.392 5.060 7.347 20.902 12.401 5.047 3.237 2.630 3.779 0.534 1.912 3.859 5.436 1.304 2.196 2.212 4.216 1109 chr17 69442987 69470881 + 0 NA Intergenic Intergenic -258614 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility candidate 17 (non-protein coding) ncRNA 0.838 nan 0.573 0.141 8.619 4.157 0.426 0.242 0.110 0.314 0.240 0.698 0.679 0.032 0.112 0.508 0.324 0.489 1.155 0.477 0.562 3.313 1.078 0.243 0.239 0.520 nan 0.592 0.547 0.497 0.196 0.231 0.342 0.543 0.869 0.135 0.231 1.024 0.579 0.035 0.251 0.090 0.076 0.426 0.698 0.045 0.045 0.119 0.040 19 chr1 7005386 7026286 + 0 NA intron (NM_015215, intron 3 of 22) intron (NM_015215, intron 3 of 22) 170452 NM_001195563 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 1.144 nan 0.794 0.639 0.507 0.213 0.294 0.133 0.085 0.121 0.095 0.224 2.471 0.161 0.112 0.229 0.190 0.270 0.351 0.972 0.883 0.264 0.072 0.289 0.272 0.267 nan nan 3.447 nan 0.401 0.918 1.017 0.073 0.089 2.021 6.319 0.839 0.589 1.759 2.328 0.018 0.174 0.294 0.224 0.149 0.286 0.352 0.533 384 chr10 131748576 131763732 + 0 NA intron (NM_001005463, intron 5 of 15) intron (NM_001005463, intron 5 of 15) 5937 NM_001005463 253738 Hs.591374 NM_001005463 ENSG00000108001 EBF3 COE3|EBF-3|O/E-2|OE-2 early B-cell factor 3 protein-coding 2.425 0.510 2.009 0.041 7.822 3.771 1.800 0.069 0.011 0.103 0.049 2.185 3.429 0.062 0.063 1.104 0.962 0.103 0.080 0.593 0.521 0.089 0.040 0.496 0.428 1.294 2.067 0.108 0.148 0.384 0.408 0.163 0.228 1.001 0.713 0.610 0.454 1.014 0.554 0.632 0.053 0.169 2.756 1.800 2.185 0.903 0.007 0.014 0.123 1377 chr19 57822612 57833344 + 0 NA Intergenic L1PA15|LINE|L1 -3887 NM_213598 125919 Hs.202544 NM_213598 ENSG00000178229 ZNF543 - zinc finger protein 543 protein-coding 2.165 1.373 1.383 1.742 2.475 1.179 1.123 0.567 0.159 0.509 0.222 1.806 1.805 0.798 0.145 2.654 2.512 2.020 2.313 2.139 2.107 3.683 1.441 1.786 1.649 0.988 1.418 1.703 2.414 2.698 2.397 1.061 1.754 1.624 1.939 1.123 1.540 4.652 1.997 0.761 1.057 0.250 0.472 1.123 1.806 0.245 0.669 0.306 0.381 1072 chr17 40426596 40442081 + 0 NA Intergenic MIRb|SINE|MIR -5227 NM_003152 6776 Hs.437058 NM_003152 ENSG00000126561 STAT5A MGF|STAT5 signal transducer and activator of transcription 5A protein-coding 2.086 1.910 nan 1.354 1.512 0.798 1.230 0.564 0.197 1.981 1.006 3.389 2.385 0.447 0.086 2.327 2.585 0.860 1.341 4.401 nan 3.314 1.157 2.950 3.065 0.946 1.396 3.296 nan 2.520 2.309 1.069 1.824 1.484 1.217 1.218 1.326 2.640 1.430 2.553 1.754 0.245 0.388 1.230 3.389 0.513 1.247 0.427 0.496 1009 chr17 7151735 7157357 + 0 NA promoter-TSS (NM_203415) promoter-TSS (NM_203415) 449 NM_001143775 23399 Hs.513913 NM_015343 ENSG00000175826 CTDNEP1 DULLARD|HSA011916|NET56 CTD nuclear envelope phosphatase 1 protein-coding 4.924 2.650 3.176 2.890 4.949 2.820 3.732 2.026 0.305 1.846 0.772 4.903 6.415 11.592 0.368 5.507 6.278 4.941 7.330 8.498 7.064 6.270 3.768 7.646 7.922 3.998 4.957 6.243 7.957 3.798 3.708 2.822 4.172 3.119 3.870 6.761 9.873 2.353 1.087 3.879 3.287 0.591 2.119 3.732 4.903 1.622 4.366 1.414 3.469 1790 chr3 114606181 114623208 + 0 NA intron (NM_001164343, intron 3 of 11) MIRb|SINE|MIR 4775 NR_121662 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 1.385 nan 1.866 0.273 2.482 1.264 0.192 0.356 0.121 1.134 0.700 1.800 0.372 0.038 0.111 0.425 0.410 0.370 0.454 1.491 nan 4.835 2.486 1.124 1.056 nan 4.816 0.924 1.590 2.346 2.071 0.140 0.229 0.640 0.403 0.390 0.888 1.550 1.092 2.251 0.265 0.056 0.099 0.192 1.800 0.473 0.486 0.076 0.236 1118 chr17 74960916 74970007 + 0 NA promoter-TSS (NR_136417) promoter-TSS (NR_136417) -180 NR_136417 105371899 Hs.634683 NR_136416 ENSG00000267568 LOC105371899 - uncharacterized LOC105371899 ncRNA 2.342 3.187 0.885 1.460 7.507 3.456 2.183 0.108 0.083 2.376 1.182 1.421 5.516 0.164 0.095 8.316 10.390 5.027 2.942 4.118 3.365 6.032 3.318 2.071 2.144 nan 0.532 2.335 4.949 3.367 3.323 4.777 6.783 2.416 2.584 1.581 3.171 nan 1.616 1.573 0.615 0.627 0.981 2.183 1.421 0.481 1.020 5.888 0.677 1029 chr17 20972507 20982442 + 0 NA Intergenic LTR47B|LTR|ERVL -1395 NR_110896 101060544 Hs.585812 NR_110895 ENSG00000236819 LINC01563 HP08942 long intergenic non-protein coding RNA 1563 ncRNA nan nan nan 0.072 0.375 0.258 0.064 0.076 0.080 0.127 0.092 0.061 0.222 0.079 0.091 0.352 0.288 0.280 0.205 0.668 0.525 0.732 0.248 0.170 0.102 2.108 2.258 0.370 0.453 5.429 4.933 0.096 0.161 0.058 0.056 3.635 9.203 0.363 0.362 0.881 0.144 0.019 0.008 0.064 0.061 0.020 0.092 0.020 4.179 321 chr1 246148835 246173322 + 0 NA intron (NM_001167740, intron 5 of 11) intron (NM_001167740, intron 5 of 11) 419636 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding nan 1.248 nan 0.475 0.484 0.268 0.551 0.553 0.210 0.224 0.242 1.036 0.773 0.053 0.085 0.853 0.899 2.624 4.301 1.004 1.143 1.071 0.426 1.764 1.807 0.641 0.923 0.527 0.881 0.345 0.210 0.619 0.778 0.157 0.269 0.325 0.708 0.582 0.507 0.102 0.203 0.047 0.065 0.551 1.036 0.028 0.523 0.675 0.174 1435 chr2 46523364 46543289 + 0 NA intron (NM_001430, intron 1 of 15) intron (NM_001430, intron 1 of 15) 8785 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 0.894 nan 0.974 2.011 1.543 0.830 0.374 1.224 0.274 0.622 0.205 0.300 1.549 0.088 0.090 0.267 0.207 0.491 1.045 nan 0.511 1.262 0.875 0.511 0.513 0.153 0.378 1.566 2.770 0.450 0.289 0.182 0.233 0.068 0.063 0.266 nan nan 0.745 0.037 0.236 0.014 0.043 0.374 0.300 0.082 1.957 0.030 0.055 350 chr10 21779212 21825064 + 0 NA TTS (NM_207371) TTS (NM_207371) 12473 NM_207371 387640 Hs.350848 NM_207371 ENSG00000180592 SKIDA1 C10orf140|DLN-1 SKI/DACH domain containing 1 protein-coding 2.916 1.896 1.625 2.981 2.910 1.478 1.348 3.100 0.344 1.062 0.632 1.701 2.013 9.238 0.198 4.261 4.337 1.408 2.510 1.830 1.574 4.730 1.611 1.148 1.086 3.230 4.097 2.604 4.246 3.800 4.496 2.024 3.350 3.088 2.618 4.715 5.255 1.730 0.994 1.920 1.631 0.717 1.571 1.348 1.701 0.484 1.411 1.828 1.871 866 chr15 56533139 56548992 + 0 NA Intergenic Intergenic -5582 NM_022841 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 1.779 1.464 2.544 0.747 1.832 1.121 1.415 0.821 0.122 0.931 0.739 1.233 2.549 0.919 0.082 0.805 1.236 0.878 1.336 1.651 1.691 1.877 0.681 2.072 2.001 2.329 2.756 1.336 1.994 5.762 6.224 0.943 1.977 4.056 3.962 1.682 2.698 1.072 0.640 0.315 0.651 1.595 0.433 1.415 1.233 0.442 0.993 1.105 0.838 861 chr15 41074371 41083680 + 0 NA intron (NM_018163, intron 1 of 10) intron (NM_018163, intron 1 of 10) 16866 NM_001130448 643338 Hs.631715 NM_001130448 ENSG00000188277 C15orf62 - chromosome 15 open reading frame 62 protein-coding 0.904 2.603 nan 2.933 4.371 2.203 0.867 0.335 0.259 1.582 0.701 7.223 3.283 0.100 0.071 2.328 3.454 1.525 4.313 4.552 4.413 3.100 0.624 2.003 2.007 0.654 nan 7.160 7.763 0.668 0.538 1.072 2.022 0.659 1.278 0.477 0.956 1.707 1.046 1.162 0.240 0.081 0.993 0.867 7.223 0.219 0.221 0.926 0.247 1802 chr3 128897579 128905282 + 0 NA intron (NM_001127192, intron 1 of 4) intron (NM_001127192, intron 1 of 4) 1380 NM_001127193 7555 Hs.518249 NM_003418 ENSG00000169714 CNBP CNBP1|DM2|PROMM|RNF163|ZCCHC22|ZNF9 CCHC-type zinc finger nucleic acid binding protein protein-coding 7.094 nan 4.231 3.412 6.134 3.867 3.609 5.040 0.754 3.678 2.080 3.814 4.096 2.124 0.141 6.528 5.030 6.150 9.117 6.962 7.108 10.714 6.118 12.598 13.463 4.624 nan 4.590 8.367 14.784 16.357 5.194 8.233 4.062 4.863 10.948 7.969 3.314 1.800 2.345 1.955 0.717 2.132 3.609 3.814 1.307 1.320 1.570 2.816 730 chr13 98888661 98895727 + 0 NA intron (NM_005766, intron 2 of 26) intron (NM_005766, intron 2 of 26) 31416 NR_036129 100422881 NR_036129 ENSG00000263399 MIR3170 mir-3170 microRNA 3170 ncRNA 1.434 1.153 0.850 1.106 1.191 0.635 0.524 0.063 0.184 0.464 0.175 1.253 0.847 0.046 0.075 0.969 1.257 0.219 0.389 2.761 2.404 7.565 2.274 0.124 0.164 0.266 0.330 6.146 5.765 0.570 0.375 1.154 1.894 1.963 1.865 0.566 0.533 0.435 0.342 7.662 5.108 0.539 0.977 0.524 1.253 0.262 0.101 1.248 0.164 651 chr12 104317604 104327342 + 0 NA intron (NR_027249, intron 1 of 15) intron (NR_027249, intron 1 of 15) 1516 NR_027249 253724 Hs.506549 NR_027249 ENSG00000214198 TTC41P GNN|GNNP tetratricopeptide repeat domain 41, pseudogene pseudo 2.705 2.102 nan 3.133 2.446 1.406 1.780 1.767 0.362 1.577 0.975 2.319 7.979 2.685 0.152 3.467 3.193 3.550 3.454 4.611 4.127 9.256 6.145 7.469 7.648 3.172 3.918 4.424 10.112 2.765 4.274 2.398 4.692 5.532 5.757 5.960 3.286 3.367 1.913 1.388 2.370 0.949 1.114 1.780 2.319 0.660 1.700 1.484 1.024 1226 chr18 72913064 72944052 + 0 NA intron (NM_001308210, intron 1 of 1) intron (NM_001308210, intron 1 of 1) 5074 NM_001308210 10194 Hs.284217 NM_005786 ENSG00000179981 TSHZ1 CAA|NY-CO-33|SDCCAG33|TSH1 teashirt zinc finger homeobox 1 protein-coding nan nan 1.802 1.579 2.976 1.655 2.610 0.587 0.088 2.106 1.308 3.190 3.957 0.480 0.075 7.119 8.507 2.910 3.261 3.667 nan 4.426 1.471 2.993 2.926 0.699 0.947 3.409 nan 12.544 14.687 3.525 8.559 6.941 6.564 0.479 0.556 1.799 1.055 0.740 1.959 2.152 1.793 2.610 3.190 0.241 0.838 3.529 0.398 1277 chr19 18389384 18405927 + 0 NA Intergenic L2b|LINE|L2 4768 NR_036155 100422833 NR_036155 ENSG00000267959 MIR3188 mir-3188 microRNA 3188 ncRNA 4.921 2.900 4.867 3.094 4.028 2.035 3.131 1.808 0.359 2.191 0.873 4.008 4.646 3.852 0.172 2.351 3.787 2.865 4.401 6.751 6.054 5.965 3.384 8.186 8.279 2.799 3.654 5.703 7.167 5.697 6.520 1.264 2.001 4.933 3.622 6.480 7.764 2.383 1.501 3.050 2.241 1.042 1.530 3.131 4.008 0.904 2.416 0.891 2.755 2248 chr7 28366146 28371716 + 0 NA intron (NM_182899, intron 1 of 9) intron (NM_182899, intron 1 of 9) 29991 NM_182899 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5 cAMP responsive element binding protein 5 protein-coding 1.637 1.890 1.205 1.243 9.814 5.049 0.207 0.824 0.260 3.071 0.632 5.539 1.628 0.058 0.090 0.556 0.347 0.193 nan 1.301 1.120 9.879 10.640 0.376 0.342 0.183 0.328 2.810 5.079 0.340 0.098 0.071 0.224 3.384 4.515 0.314 nan 3.471 1.987 0.020 0.129 0.822 0.389 0.207 5.539 1.034 0.018 0.244 1610 chr20 35847851 35905684 + 0 NA Intergenic L2a|LINE|L2 8544 NM_001184731 2691 Hs.37023 NM_021081 ENSG00000118702 GHRH GHRF|GRF|INN growth hormone releasing hormone protein-coding 1.146 1.852 1.080 1.647 3.689 1.886 2.585 0.225 0.153 0.226 0.159 0.765 2.565 0.111 0.103 0.828 1.194 0.296 0.434 3.169 nan 4.632 1.119 0.658 0.629 0.514 0.823 0.461 0.560 0.789 0.542 0.435 0.505 0.755 0.551 0.491 nan 0.746 0.469 1.071 0.767 0.222 1.395 2.585 0.765 0.313 0.244 0.073 0.226 2507 chr9 36978897 36987258 + 0 NA intron (NM_001280553, intron 4 of 7) MER20B|DNA|hAT-Charlie 51399 NM_001280554 5079 Hs.654464 NM_016734 ENSG00000196092 PAX5 ALL3|BSAP paired box 5 protein-coding 0.881 nan 1.065 0.647 0.361 0.144 0.430 0.065 0.096 0.707 0.370 0.672 0.755 0.065 0.079 0.334 0.491 0.135 0.190 0.670 0.697 8.336 2.736 0.268 0.244 0.590 1.028 0.672 0.666 0.773 0.574 0.323 0.470 3.810 3.970 0.400 1.072 1.412 0.941 0.047 0.344 1.166 0.237 0.430 0.672 0.199 0.109 0.071 0.134 565 chr12 9557039 9573591 + 0 NA Intergenic Intergenic -5305 NR_144634 728715 NR_144634 LOC728715 - ovostatin homolog 2 ncRNA 1.303 nan nan 1.822 0.261 0.165 0.519 0.045 0.039 0.633 0.378 0.466 0.473 0.032 0.115 0.275 0.495 0.498 0.698 nan 1.452 1.864 0.607 0.799 0.764 0.267 0.449 2.005 3.168 0.766 0.882 0.255 0.311 3.609 2.414 0.257 nan 1.150 0.661 0.844 0.345 0.810 0.097 0.519 0.466 0.124 0.446 0.117 0.119 2017 chr5 134868635 134883280 + 0 NA Intergenic Intergenic -4318 NM_006161 4762 Hs.248149 NM_006161 ENSG00000181965 NEUROG1 AKA|Math4C|NEUROD3|bHLHa6|ngn1 neurogenin 1 protein-coding 1.617 0.961 nan 0.132 0.341 0.131 0.378 0.055 0.011 0.043 0.062 0.606 0.746 0.081 0.104 0.371 0.308 0.406 0.558 0.734 0.974 0.788 0.285 0.203 0.297 0.523 0.846 0.156 0.174 3.609 3.132 0.272 0.252 0.248 0.143 3.457 7.025 0.248 0.321 0.129 1.264 0.020 0.302 0.378 0.606 0.153 0.028 0.048 3.897 708 chr13 43181058 43195435 + 0 NA Intergenic MLT2B1|LTR|ERVL 39955 NM_003701 8600 Hs.333791 NM_003701 ENSG00000120659 TNFSF11 CD254|ODF|OPGL|OPTB2|RANKL|TNLG6B|TRANCE|hRANKL2|sOdf tumor necrosis factor superfamily member 11 protein-coding 0.724 0.653 0.600 0.221 0.346 0.193 0.135 0.073 0.124 0.426 0.288 0.208 0.394 0.045 0.066 0.633 0.469 0.089 0.133 2.620 2.506 5.315 1.646 0.170 0.134 0.237 0.403 0.311 0.362 0.469 0.254 0.265 0.474 0.116 0.116 0.273 0.422 1.921 1.087 0.748 0.989 0.027 0.059 0.135 0.208 0.054 0.021 0.104 0.060 1871 chr3 189177787 189187981 + 0 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -131651 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 1.217 1.180 0.774 0.155 6.218 3.241 0.327 0.262 0.121 0.183 0.146 0.165 0.358 0.052 0.080 0.293 0.112 0.255 0.435 0.280 0.398 1.759 0.730 0.345 0.329 0.353 0.472 0.406 0.433 0.809 0.434 0.102 0.214 0.182 0.196 0.431 0.568 0.602 0.436 0.033 0.094 0.046 0.139 0.327 0.165 0.028 0.040 0.049 0.073 2394 chr8 95955082 95973654 + 0 NA Intergenic Intergenic -2753 NM_001135733 94241 Hs.492261 NM_033285 ENSG00000164938 TP53INP1 SIP|TP53DINP1|TP53INP1A|TP53INP1B|Teap|p53DINP1 tumor protein p53 inducible nuclear protein 1 protein-coding nan 1.361 3.032 1.276 1.386 0.922 0.759 1.212 0.228 0.263 0.280 2.257 4.842 0.239 0.118 1.268 1.284 1.625 nan 2.865 2.876 2.605 0.782 1.183 1.069 2.051 2.776 4.113 6.611 0.900 0.670 1.053 2.262 2.175 2.460 0.811 1.795 0.731 0.495 1.567 0.259 0.856 1.289 0.759 2.257 0.470 0.966 1.110 0.266 2548 chr9 129986109 130028059 + 0 NA Intergenic Intergenic -18857 NM_001286779 84253 Hs.29304 NM_032293 ENSG00000136895 GARNL3 bA356B19.1 GTPase activating Rap/RanGAP domain like 3 protein-coding nan nan 1.347 0.422 0.412 0.252 0.249 0.159 0.112 0.187 0.131 0.354 nan 0.204 0.095 0.345 0.340 0.465 0.612 0.726 0.765 nan 0.285 0.708 0.732 0.413 nan 0.683 0.964 1.244 0.863 0.213 0.304 0.287 0.281 1.136 2.520 nan 0.582 0.139 0.153 0.069 0.135 0.249 0.354 0.141 0.253 0.048 0.443 779 chr14 37209691 37245248 + 0 NA intron (NM_030631, intron 3 of 9) intron (NM_030631, intron 3 of 9) 100696 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 1.294 0.953 1.261 1.171 1.408 0.676 0.510 0.153 0.126 0.236 0.195 0.945 4.158 0.054 0.121 0.233 0.162 0.230 0.346 1.482 1.466 1.337 0.340 0.293 0.314 0.676 1.017 2.627 2.225 0.651 0.294 0.251 0.373 1.638 2.386 0.167 0.271 0.772 0.543 9.692 2.195 0.558 0.180 0.510 0.945 0.120 0.605 0.190 0.191 1541 chr2 219431966 219435294 + 0 NA promoter-TSS (NM_020935) promoter-TSS (NM_020935) 327 NM_001271635 9125 Hs.148767 NM_005444 ENSG00000144580 CNOT9 CAF40|CT129|RCD-1|RCD1|RQCD1 CCR4-NOT transcription complex subunit 9 protein-coding nan 5.282 nan 8.408 9.316 4.620 7.042 4.655 0.368 4.284 1.809 6.928 18.139 6.323 0.167 10.320 9.078 12.845 17.514 9.960 9.172 9.189 6.150 19.201 19.501 6.937 8.352 12.809 19.718 13.424 12.751 5.503 11.287 5.388 8.064 11.000 10.197 3.955 2.017 6.301 4.151 1.146 3.217 7.042 6.928 2.309 3.916 2.671 2.854 26 chr1 8561838 8587151 + 0 NA intron (NM_012102, intron 8 of 23) intron (NM_012102, intron 8 of 23) -19521 NR_132752 106632271 NR_132752 SNORD128 ZL43 small nucleolar RNA, C/D box 128 snoRNA 1.451 nan 1.333 0.390 0.463 0.240 0.374 0.670 0.154 0.447 0.229 0.213 0.619 0.252 0.120 0.390 0.576 0.502 1.012 1.167 1.302 0.779 0.363 0.861 0.833 1.349 nan nan 3.236 nan 1.938 0.496 0.662 0.176 0.186 2.262 5.825 1.040 0.681 0.124 0.440 0.048 0.193 0.374 0.213 0.075 0.105 0.217 1.303 2065 chr6 10393598 10431944 + 0 NA promoter-TSS (NM_001032280) promoter-TSS (NM_001032280) -164 NM_001032280 7020 Hs.519880 NM_003220 ENSG00000137203 TFAP2A AP-2|AP-2alpha|AP2TF|BOFS|TFAP2 transcription factor AP-2 alpha protein-coding 1.411 nan 2.234 2.064 1.542 0.885 3.022 0.534 0.134 1.227 0.793 3.999 3.274 0.717 0.101 2.791 3.269 2.435 3.686 2.354 1.930 3.556 1.257 2.109 2.073 1.071 1.471 0.255 0.253 1.003 0.712 0.758 1.513 4.391 4.045 0.776 1.311 1.857 1.023 1.187 0.572 1.372 2.568 3.022 3.999 0.041 0.732 0.733 0.362 371 chr10 104208225 104224255 + 0 NA TTS (NR_038938) TTS (NR_038938) -4930 NM_024789 79847 Hs.309069 NM_024789 ENSG00000138111 MFSD13A C10orf77|TMEM180|bA18I14.8 major facilitator superfamily domain containing 13A protein-coding nan nan 2.775 1.629 2.085 1.152 1.148 0.276 0.100 1.093 0.573 3.335 3.262 0.729 0.075 2.931 2.933 1.496 2.269 3.028 2.884 4.076 1.618 1.262 1.101 1.164 nan 3.924 5.136 2.034 2.466 1.727 2.435 1.583 1.153 3.653 9.190 1.569 0.850 2.193 2.508 0.255 0.944 1.148 3.335 0.815 1.236 1.018 3.074 1687 chr21 40683717 40691747 + 0 NA promoter-TSS (NR_046655) promoter-TSS (NR_046655) 99 NR_046655 100874093 Hs.588102 NR_046655 ENSG00000238141 BRWD1-AS1 - BRWD1 antisense RNA 1 ncRNA nan 2.262 5.846 4.031 3.918 2.158 4.094 1.368 0.263 1.272 0.767 4.482 10.427 2.661 0.141 4.780 4.218 3.769 4.657 6.409 5.763 nan 1.385 8.836 9.193 2.460 nan 5.674 9.509 6.386 6.162 2.846 4.793 4.908 4.565 3.824 3.959 2.499 1.689 1.954 4.877 1.552 2.694 4.094 4.482 1.075 2.042 1.527 2.013 2301 chr7 106584249 106607437 + 0 NA Intergenic MLT1A0|LTR|ERVL-MaLR -89335 NM_002736 5577 Hs.433068 NM_002736 ENSG00000005249 PRKAR2B PRKAR2|RII-BETA protein kinase cAMP-dependent type II regulatory subunit beta protein-coding nan 0.576 0.649 0.114 0.296 0.117 0.520 0.110 0.069 0.081 0.150 0.133 0.301 0.066 0.134 0.539 0.303 0.257 0.337 0.416 0.442 3.452 1.184 0.216 0.198 0.373 0.547 0.143 0.224 0.325 0.184 0.233 0.300 0.080 0.076 0.173 nan 1.054 0.901 0.041 0.168 0.004 0.075 0.520 0.133 0.013 0.045 0.034 0.032 44 chr1 16466229 16509133 + 0 NA Intergenic AluSc|SINE|Alu -5077 NM_001329090 1969 Hs.171596 NM_004431 ENSG00000142627 EPHA2 ARCC2|CTPA|CTPP1|CTRCT6|ECK EPH receptor A2 protein-coding 1.555 0.852 nan 0.225 0.309 0.196 0.765 1.140 0.266 0.322 0.191 0.129 0.765 2.233 0.119 0.868 1.254 1.024 3.764 1.017 1.096 1.188 0.310 0.835 nan 0.569 nan 0.801 1.189 nan 0.537 0.503 0.628 0.244 0.344 0.467 0.928 0.870 0.593 0.042 0.043 0.026 0.148 0.765 0.129 0.218 0.294 0.201 0.211 1513 chr2 198360091 198373053 + 0 NA intron (NM_001202485, intron 2 of 8) intron (NM_001202485, intron 2 of 8) -1574 NM_199440 3329 Hs.595053 NM_002156 ENSG00000144381 HSPD1 CPN60|GROEL|HLD4|HSP-60|HSP60|HSP65|HuCHA60|SPG13 heat shock protein family D (Hsp60) member 1 protein-coding 2.799 nan 2.201 2.967 4.632 2.469 1.793 0.864 0.199 1.081 0.894 2.244 7.052 1.526 0.123 1.792 2.585 2.275 3.606 3.153 3.319 2.899 1.588 7.497 7.236 2.211 2.558 3.914 5.318 5.308 5.887 3.445 8.101 2.092 2.010 5.397 6.375 1.475 0.710 1.458 1.481 0.442 1.615 1.793 2.244 0.772 1.388 1.230 4.128 602 chr12 49735649 49742553 + 0 NA Intergenic CpG -1599 NM_001304944 79962 Hs.659300 NM_024902 ENSG00000178401 DNAJC22 wus DnaJ heat shock protein family (Hsp40) member C22 protein-coding 2.677 nan 1.025 0.694 1.192 0.768 0.501 0.570 0.026 0.389 0.379 0.762 0.875 0.379 0.060 0.690 0.885 1.734 2.215 1.755 1.444 4.048 0.925 1.576 1.464 1.469 1.852 1.458 2.408 1.475 1.399 1.332 1.774 4.675 3.251 0.865 1.819 2.255 1.346 4.916 10.547 1.923 0.081 0.501 0.762 0.253 2.126 1.690 0.090 1864 chr3 181655325 181667108 + 0 NA Intergenic Intergenic -8936 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 0.995 2.063 1.235 0.150 0.922 0.396 0.333 0.141 0.123 0.347 0.238 0.211 0.885 3.025 0.161 0.323 0.200 0.213 0.486 0.513 0.466 7.626 1.877 0.208 0.149 0.592 1.022 0.550 0.429 0.606 0.264 0.141 0.244 1.306 2.039 0.131 0.188 1.286 0.630 0.070 0.088 0.357 0.324 0.333 0.211 0.108 0.051 0.017 0.084 1058 chr17 37006394 37011194 + 0 NA TTS (NR_002576) TTS (NR_002576) 454 NR_002576 619505 Hs.738742 NR_002576 ENSG00000199293 SNORA21 ACA21 small nucleolar RNA, H/ACA box 21 snoRNA nan 2.797 2.573 2.033 5.399 2.471 2.413 1.788 0.334 2.213 0.749 3.293 5.674 2.668 0.186 4.232 3.959 5.777 8.545 nan 5.306 7.422 3.599 18.563 20.631 3.207 3.985 6.702 11.289 nan 8.827 2.429 4.013 6.393 7.343 6.178 6.682 3.862 1.834 1.671 1.419 0.413 1.438 2.413 3.293 1.133 1.462 1.081 1.736 2374 chr8 68402679 68421580 + 0 NA intron (NM_020361, intron 6 of 10) L1MD1|LINE|L1 156060 NR_136224 102724708 Hs.636330 NR_136223 LOC102724708 - uncharacterized LOC102724708 ncRNA 1.108 0.877 0.578 0.485 0.399 0.260 0.292 0.745 0.102 0.345 0.266 3.997 2.406 0.051 0.095 0.292 0.153 0.389 0.604 1.095 1.063 0.390 0.099 0.111 0.108 0.389 nan 0.130 0.138 nan 0.187 0.204 0.326 0.475 0.740 0.232 0.342 1.892 0.956 0.159 0.365 0.147 0.122 0.292 3.997 0.010 0.107 0.179 0.074 1412 chr2 16340937 16351780 + 0 NA Intergenic Intergenic 155809 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 (non-protein coding) ncRNA 0.641 0.340 0.664 0.518 0.112 0.084 0.062 0.047 0.196 0.057 0.162 0.044 0.447 0.061 0.113 0.495 0.411 0.380 0.208 0.226 0.219 0.337 0.105 0.403 0.578 0.178 0.253 0.193 nan 0.393 0.194 20.533 22.123 0.027 0.040 0.207 nan 0.128 0.252 0.052 0.147 0.017 0.050 0.062 0.044 0.027 0.028 15.331 0.012 281 chr1 205710421 205720676 + 0 NA intron (NM_022731, intron 1 of 6) intron (NM_022731, intron 1 of 6) 3824 NM_022731 64710 Hs.213061 NM_022731 ENSG00000069275 NUCKS1 JC7|NUCKS nuclear casein kinase and cyclin dependent kinase substrate 1 protein-coding 2.876 2.953 3.512 1.664 4.168 2.327 3.098 1.942 0.125 1.884 0.851 2.614 5.786 2.905 0.151 2.919 2.960 5.754 7.694 4.986 5.409 3.405 2.768 nan nan 2.317 2.959 3.478 5.144 3.530 3.224 1.333 2.323 2.134 2.839 3.864 3.681 1.636 0.797 1.746 3.515 0.575 1.350 3.098 2.614 0.529 1.120 0.744 1.413 931 chr16 4287475 4312272 + 0 NA intron (NR_039999, intron 2 of 2) intron (NR_039999, intron 2 of 2) 3917 NR_039999 100507501 Hs.632979 NR_039999 ENSG00000262468 LINC01569 - long intergenic non-protein coding RNA 1569 ncRNA 1.296 nan 1.179 2.883 2.090 1.234 1.376 0.185 0.092 0.601 0.244 3.086 2.216 0.292 0.088 2.215 2.195 0.619 0.668 3.081 2.840 nan 2.396 2.944 2.742 0.626 nan 3.050 3.795 3.271 3.268 3.172 4.365 0.495 0.378 1.619 2.880 2.488 1.254 1.356 1.358 0.084 0.253 1.376 3.086 0.291 0.607 3.612 1.043 2512 chr9 42717030 42730764 + 0 NA Intergenic AluSq2|SINE|Alu 5831 NM_199244 349334 Hs.712520 NM_199244 ENSG00000184659 FOXD4L4 FOXD4L2|FOXD4b|bA460E7.2 forkhead box D4-like 4 protein-coding 1.156 1.813 1.191 0.180 0.485 0.199 0.356 0.094 0.128 0.206 0.357 0.426 0.508 0.107 0.193 0.609 0.461 0.346 0.302 1.288 1.262 1.043 0.396 0.544 0.394 0.327 0.577 0.312 0.344 0.611 0.204 0.449 0.811 5.297 4.671 0.258 0.369 0.762 0.641 0.045 0.085 2.485 0.059 0.356 0.426 0.035 0.111 0.444 0.054 12 chr1 3563865 3649254 + 0 NA promoter-TSS (NM_001126241) promoter-TSS (NM_001126241) -677 NM_001204191 7161 Hs.192132 NM_005427 ENSG00000078900 TP73 P73 tumor protein p73 protein-coding 1.247 nan 2.918 1.406 1.257 0.687 0.418 0.145 0.102 0.602 0.397 0.654 5.807 0.271 0.095 0.367 0.429 0.477 0.708 7.024 6.555 1.002 0.364 0.439 0.526 0.913 nan nan 2.549 nan 1.425 0.928 1.518 0.640 0.665 0.251 0.312 1.613 0.830 4.274 1.786 0.210 0.149 0.418 0.654 0.653 0.964 1.109 0.103 2212 chr7 1593364 1603046 + 0 NA Intergenic MIR3|SINE|MIR -2139 NM_001097620 202915 Hs.592174 NM_152689 ENSG00000164855 TMEM184A SDMG1 transmembrane protein 184A protein-coding 1.981 1.577 8.459 1.293 1.907 0.840 1.096 0.129 0.060 1.678 1.032 5.027 nan 0.421 0.102 1.647 2.556 0.249 nan 6.541 6.254 nan 1.492 2.266 2.568 0.305 0.638 nan 6.680 1.982 2.044 1.163 1.249 2.653 2.278 0.786 1.757 2.301 1.265 1.378 2.079 0.649 1.299 1.096 5.027 1.487 2.664 0.672 0.411 1756 chr3 21429636 21436819 + 0 NA Intergenic AT_rich|Low_complexity|Low_complexity -13991 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 0.555 0.500 0.502 0.258 0.111 0.067 0.036 0.603 0.159 0.066 0.109 0.013 0.115 0.016 0.083 0.181 0.113 4.314 12.082 0.186 0.121 0.071 0.008 0.094 0.073 0.297 0.336 0.376 0.302 nan 0.130 0.034 0.202 0.064 0.022 0.087 0.180 0.051 0.111 0.008 0.087 0.026 0.036 0.013 0.169 0.014 1555 chr2 239193280 239200033 + 0 NA intron (NM_022817, intron 1 of 22) intron (NM_022817, intron 1 of 22) 551 NM_022817 8864 Hs.58756 NM_003894 ENSG00000132326 PER2 FASPS|FASPS1 period circadian clock 2 protein-coding 5.141 nan 7.520 2.018 2.548 1.311 1.819 0.757 0.024 1.459 0.425 6.282 3.656 0.787 0.174 3.178 5.370 3.676 8.332 2.379 1.942 3.339 2.756 4.708 5.034 1.531 2.263 5.683 7.480 1.844 2.572 3.714 5.249 5.846 4.153 2.223 1.690 1.940 1.338 0.866 2.870 0.819 2.152 1.819 6.282 0.376 4.480 2.830 0.677 2218 chr7 4776995 4781165 + 0 NA intron (NM_001037165, intron 1 of 8) intron (NM_001037165, intron 1 of 8) -36182 NM_014855 9907 Hs.558440 NM_014855 ENSG00000242802 AP5Z1 KIAA0415|SPG48|zeta adaptor related protein complex 5 zeta 1 subunit protein-coding 1.364 0.739 0.964 2.124 0.337 0.121 0.671 0.431 0.115 0.411 0.438 1.126 nan 0.997 0.183 0.606 0.517 0.309 nan 1.564 1.649 nan 0.253 0.929 0.779 0.497 0.956 nan 7.325 0.195 0.107 0.154 0.410 1.025 2.451 0.309 0.532 0.457 0.416 1.108 0.193 0.139 0.095 0.671 1.126 0.234 8.452 0.095 0.119 1474 chr2 122286607 122290556 + 0 NA TTS (NR_023343) TTS (NR_023343) 125 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 4.718 nan nan 4.198 3.440 1.815 2.519 2.785 0.863 1.396 0.860 3.788 8.531 4.330 0.214 6.625 7.281 6.575 8.493 4.678 4.745 8.942 7.484 15.965 17.234 4.091 5.040 7.281 11.416 6.358 5.818 5.023 6.034 2.652 2.965 7.226 6.571 1.512 1.084 3.002 1.080 0.314 2.203 2.519 3.788 0.760 1.907 1.641 1.158 1575 chr20 5121220 5154221 + 0 NA intron (NM_003818, intron 1 of 12) intron (NM_003818, intron 1 of 12) 30313 NM_003818 8760 Hs.126857 NM_003818 ENSG00000101290 CDS2 - CDP-diacylglycerol synthase 2 protein-coding 1.180 1.266 0.915 0.158 0.350 0.235 1.073 0.265 0.088 0.200 0.153 0.131 0.807 0.085 0.100 0.715 0.899 0.364 0.534 0.633 0.797 2.223 0.680 0.414 0.465 0.801 1.321 0.760 0.828 1.082 0.878 0.399 0.546 0.191 0.231 0.542 1.047 0.657 0.639 1.182 4.921 0.041 0.549 1.073 0.131 0.255 0.142 0.081 0.531 2123 chr6 41278684 41290291 + 0 NA Intergenic MER31-int|LTR|ERV1 -19041 NM_004828 9436 Hs.194721 NM_004828 ENSG00000096264 NCR2 CD336|LY95|NK-p44|NKP44|dJ149M18.1 natural cytotoxicity triggering receptor 2 protein-coding 0.965 1.207 0.851 3.719 3.893 1.842 0.606 0.218 0.110 1.271 0.541 2.388 4.661 0.057 0.113 0.637 0.874 0.331 0.670 3.752 3.054 8.004 3.410 0.700 0.838 0.296 0.539 10.035 nan 0.577 0.595 0.396 0.584 1.349 1.819 0.224 0.363 2.098 1.468 4.416 1.877 0.157 0.047 0.606 2.388 0.417 2.644 0.289 0.096 234 chr1 165407426 165434821 + 0 NA Intergenic Intergenic -6531 NM_006917 6258 Hs.26550 NM_006917 ENSG00000143171 RXRG NR2B3|RXRC retinoid X receptor gamma protein-coding 1.272 nan 1.189 0.729 0.551 0.248 0.513 0.154 0.071 0.149 0.209 0.124 2.001 0.032 0.109 0.465 0.414 0.404 0.876 0.673 nan 0.207 0.120 0.130 0.127 0.224 0.364 1.415 nan 0.948 0.786 0.393 0.615 1.232 2.889 1.774 4.344 0.408 0.444 0.065 0.189 0.284 0.241 0.513 0.124 0.272 0.037 0.094 2.160 1714 chr22 29490612 29507011 + 0 NA intron (NM_032045, intron 3 of 9) intron (NM_032045, intron 3 of 9) 29745 NM_001039570 83999 Hs.229335 NM_032045 ENSG00000183762 KREMEN1 KREMEN|KRM1 kringle containing transmembrane protein 1 protein-coding nan 0.611 0.798 0.209 0.282 0.136 0.461 0.190 0.099 0.038 0.079 0.415 0.256 0.066 0.070 0.554 0.434 6.898 nan 0.427 0.468 0.381 0.140 0.411 0.385 1.870 nan 0.927 0.808 1.400 0.802 0.145 0.349 0.810 0.881 0.714 nan 1.113 0.892 0.054 0.129 0.336 0.073 0.461 0.415 0.793 0.056 0.061 0.602 459 chr11 63674273 63707513 + 0 NA Intergenic Intergenic -6577 NM_173587 283248 Hs.98788 NM_173587 ENSG00000167771 RCOR2 - REST corepressor 2 protein-coding nan 1.190 1.377 2.036 0.820 0.448 2.101 0.360 0.170 0.193 0.181 1.062 2.205 1.376 0.103 3.867 5.230 0.748 1.111 3.385 2.992 1.974 0.697 1.525 1.440 1.291 1.835 4.080 4.881 3.526 3.812 1.164 1.747 1.973 1.520 2.217 4.348 0.802 0.574 2.184 0.916 0.777 1.623 2.101 1.062 1.281 1.540 0.771 1.972 1493 chr2 171778064 171788384 + 0 NA Intergenic AluJb|SINE|Alu -1724 NM_001201428 26003 Hs.431317 NM_015530 ENSG00000115806 GORASP2 GOLPH6|GRASP55|GRS2|p59 golgi reassembly stacking protein 2 protein-coding 2.665 2.498 3.600 3.122 1.945 1.178 1.293 0.870 0.124 1.090 0.669 1.670 3.779 1.419 0.087 2.160 2.439 2.680 3.696 2.484 2.376 4.537 1.769 10.314 10.634 1.626 2.334 7.648 10.352 2.793 3.399 1.938 2.771 1.573 1.719 3.621 4.033 1.651 0.872 1.793 0.915 0.147 0.751 1.293 1.670 0.480 0.662 0.808 0.890 1500 chr2 176970389 177006199 + 0 NA exon (NM_014213, exon 1 of 2) exon (NM_014213, exon 1 of 2) 881 NM_014213 3235 Hs.236646 NM_014213 ENSG00000128709 HOXD9 HOX4|HOX4C|Hox-4.3|Hox-5.2 homeobox D9 protein-coding 2.179 2.241 1.533 2.427 3.779 1.988 1.152 0.335 0.108 1.489 0.949 8.434 5.409 0.935 0.089 0.738 1.088 1.990 2.481 6.248 5.801 2.254 0.908 0.836 0.892 1.038 1.475 3.142 3.732 1.523 1.696 2.759 4.952 1.686 1.477 0.444 0.948 1.798 0.929 6.000 0.973 0.552 0.294 1.152 8.434 0.198 2.434 2.182 0.104 1505 chr2 182472520 182525345 + 0 NA intron (NM_001030311, intron 1 of 13) intron (NM_001030311, intron 1 of 13) 22902 NM_001030311 375298 Hs.732358 NM_201548 ENSG00000188452 CERKL RP26 ceramide kinase like protein-coding 2.685 1.083 1.476 0.122 0.991 0.468 0.273 0.084 0.092 0.178 0.169 0.210 0.363 0.029 0.077 0.322 0.199 0.181 0.224 0.238 0.295 0.958 0.232 0.352 0.333 nan 6.355 0.680 0.719 11.052 11.829 0.127 0.212 2.449 2.165 1.406 nan 0.614 0.431 0.219 0.041 0.871 0.183 0.273 0.210 0.777 0.039 0.051 1.527 891 chr15 76618838 76635029 + 0 NA Intergenic MIR|SINE|MIR -2132 NM_145805 64843 Hs.444677 NM_145805 ENSG00000159556 ISL2 - ISL LIM homeobox 2 protein-coding 1.386 1.066 1.261 0.126 0.412 0.247 0.809 0.659 0.100 0.137 0.134 0.333 1.248 1.000 0.060 1.865 1.681 1.440 1.816 0.951 0.670 1.378 0.375 1.876 2.027 0.811 1.104 0.166 0.220 2.891 2.687 1.667 2.804 1.551 1.033 4.105 5.757 0.742 0.490 0.152 0.094 0.441 0.622 0.809 0.333 0.408 0.038 0.981 2.162 2007 chr5 93123240 93146309 + 0 NA intron (NM_032042, intron 8 of 10) intron (NM_032042, intron 8 of 10) -57465 NM_153216 134187 Hs.678995 NM_153216 ENSG00000248483 POU5F2 SPRM-1 POU domain class 5, transcription factor 2 protein-coding nan 4.159 1.208 0.103 0.472 0.288 2.879 0.231 0.083 0.218 0.124 0.324 0.555 0.150 0.240 0.202 0.255 0.342 0.281 0.343 2.351 0.797 0.297 0.289 0.813 1.051 0.878 0.654 0.535 0.220 0.124 0.198 5.855 8.606 0.281 nan 1.577 0.697 0.061 0.290 1.541 0.101 2.879 0.042 0.453 0.074 0.097 2445 chr8 144230516 144245874 + 0 NA Intergenic Intergenic 3262 NM_002347 4062 Hs.159590 NM_002347 ENSG00000176956 LY6H NMLY6 lymphocyte antigen 6 complex, locus H protein-coding 1.072 0.882 nan 0.098 0.333 0.156 0.593 0.084 0.032 0.050 0.043 0.055 1.333 0.148 0.068 0.936 1.137 0.107 0.136 nan 1.281 nan 0.087 0.199 0.172 4.510 6.909 0.102 0.094 0.362 0.219 0.958 1.230 0.096 0.082 0.141 0.158 0.378 0.477 0.442 0.135 0.012 0.026 0.593 0.055 0.070 0.084 0.395 0.040 118 chr1 53963592 53980879 + 0 NA 3' UTR (NM_147193, exon 10 of 10) 3' UTR (NM_147193, exon 10 of 10) 47163 NM_033067 63948 Hs.131654 NM_033067 ENSG00000143006 DMRTB1 - DMRT like family B with proline rich C-terminal 1 protein-coding 1.180 0.680 1.231 0.148 0.406 0.250 2.006 1.239 0.204 0.186 0.142 0.172 1.171 0.050 0.075 0.554 0.840 0.584 0.840 2.621 2.409 0.502 0.221 0.464 0.505 2.353 2.621 1.264 1.783 0.859 0.784 0.624 1.088 0.679 0.492 0.730 nan 0.545 0.546 3.485 0.735 0.221 0.106 2.006 0.172 0.463 0.135 0.442 0.446 413 chr11 12819156 12838323 + 0 NA intron (NM_021961, intron 3 of 12) intron (NM_021961, intron 3 of 12) 132770 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 1.223 nan 2.449 1.984 2.620 1.280 2.360 0.973 0.082 1.340 0.674 5.535 3.409 0.176 0.066 nan 1.164 1.653 4.050 3.318 3.466 3.540 1.740 0.921 0.863 1.218 nan 2.799 4.020 0.934 0.894 0.911 2.075 2.779 2.507 1.515 4.439 2.722 nan 3.496 2.883 0.764 0.972 2.360 5.535 0.217 0.244 1.814 1.249 2311 chr7 115300995 115325259 + 0 NA Intergenic Intergenic 295240 NM_001244583 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding nan 0.705 0.997 0.127 0.257 0.145 0.642 0.279 0.139 0.284 0.349 0.246 0.268 0.077 0.174 0.405 0.294 0.300 0.706 0.195 0.240 0.129 0.101 0.251 0.246 0.402 0.555 0.426 0.395 0.542 0.223 0.225 0.338 11.894 14.013 0.327 0.857 0.653 0.675 0.060 0.423 3.465 0.047 0.642 0.246 0.032 0.397 0.069 0.102 1812 chr3 134513397 134529927 + 0 NA intron (NM_004441, intron 1 of 15) intron (NM_004441, intron 1 of 15) 7563 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 1.026 nan nan 0.852 1.110 0.605 0.661 0.137 0.128 0.189 0.160 0.087 2.513 0.204 0.054 0.354 0.234 1.220 1.641 1.203 0.924 5.656 1.421 0.214 0.210 0.306 0.671 0.874 0.953 nan 0.329 0.377 0.804 0.585 0.493 0.151 0.172 0.225 0.346 0.960 0.335 0.110 0.157 0.661 0.087 0.312 0.025 0.218 0.022 1799 chr3 127283351 127294901 + 0 NA Intergenic MLT1B|LTR|ERVL-MaLR 5048 NR_106883 102466199 NR_106883 ENSG00000275067 MIR6825 hsa-mir-6825 microRNA 6825 ncRNA 1.156 nan 0.971 0.330 0.367 0.263 0.772 0.258 0.124 0.224 0.227 0.176 2.216 0.065 0.061 0.332 0.356 0.246 0.269 1.029 0.867 1.763 0.374 0.470 0.441 0.681 nan 0.260 0.339 1.182 0.990 0.458 0.605 0.273 0.465 0.534 0.781 1.001 0.812 5.285 0.986 0.050 0.298 0.772 0.176 0.293 0.059 0.185 0.148 171 chr1 145541163 145558447 + 0 NA intron (NM_144698, intron 1 of 13) intron (NM_144698, intron 1 of 13) 596 NM_001280799 148741 Hs.710624 NM_144698 ENSG00000198483 ANKRD35 - ankyrin repeat domain 35 protein-coding 1.556 nan 2.363 2.753 1.151 0.640 4.733 0.694 0.158 2.504 1.354 5.077 12.129 0.138 0.101 0.680 0.935 0.961 1.255 5.931 6.668 5.935 1.906 0.517 0.602 1.138 1.675 4.247 3.787 0.549 0.331 0.810 1.013 4.597 4.414 0.412 0.799 2.881 1.335 1.755 5.227 1.894 1.408 4.733 5.077 0.104 0.567 0.344 0.095 2433 chr8 140783482 140791863 + 0 NA intron (NM_031466, intron 21 of 22) intron (NM_031466, intron 21 of 22) -72373 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 1.986 0.589 nan 0.611 2.657 1.568 0.244 0.053 0.078 0.094 0.019 1.730 1.245 0.053 0.056 0.337 0.371 0.185 0.289 nan 1.216 nan 0.567 0.458 0.409 0.318 0.530 2.367 2.005 0.940 0.781 0.362 0.583 0.271 0.434 0.362 0.411 0.704 0.518 0.490 1.687 0.055 0.102 0.244 1.730 0.302 10.951 0.208 0.059 774 chr14 35852346 35883032 + 0 NA Intergenic Intergenic 6271 NM_020529 4792 Hs.81328 NM_020529 ENSG00000100906 NFKBIA IKBA|MAD-3|NFKBI NFKB inhibitor alpha protein-coding 2.438 1.867 1.372 1.409 1.087 0.658 1.361 1.897 0.304 0.687 0.341 1.770 6.981 1.486 0.135 0.708 0.916 2.826 3.823 2.130 2.137 2.576 1.435 4.034 4.154 1.384 1.920 4.166 5.628 3.132 2.980 0.607 1.003 1.275 1.188 1.484 1.941 1.276 0.884 3.928 2.898 0.361 0.805 1.361 1.770 0.467 0.918 0.309 0.658 1954 chr5 32488814 32509294 + 0 NA Intergenic HAL1b|LINE|L1 -54187 NR_144318 51663 Hs.435231 NM_016107 ENSG00000056097 ZFR SPG71|ZFR1 zinc finger RNA binding protein protein-coding 1.289 1.607 nan 0.746 0.549 0.305 0.926 3.331 0.683 1.333 0.878 5.642 1.012 0.032 0.121 0.476 0.543 0.343 0.608 4.121 3.617 3.359 1.025 0.284 0.337 1.755 2.838 0.242 0.249 2.295 2.146 0.338 0.492 1.157 0.993 0.160 0.210 2.726 1.604 0.079 0.206 0.338 0.101 0.926 5.642 0.478 0.546 0.114 0.036 2397 chr8 102213406 102221227 + 0 NA intron (NM_001267708, intron 1 of 5) intron (NM_001267708, intron 1 of 5) 644 NM_001267708 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 7.708 nan 10.177 7.067 7.850 3.909 2.713 3.633 0.472 1.792 0.881 8.072 24.199 1.475 0.131 3.267 3.257 4.020 6.541 10.926 8.608 nan 4.220 12.445 12.582 4.096 nan 14.897 20.038 nan 3.710 1.927 4.561 7.746 7.888 5.179 nan 4.062 2.149 5.430 5.970 2.145 2.841 2.713 8.072 0.983 3.051 1.242 1.680 2012 chr5 121719667 121745750 + 0 NA intron (NM_001308107, intron 2 of 8) MIR|SINE|MIR 5924 NM_001308105 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding nan 0.897 1.344 0.320 1.252 0.543 0.147 0.085 0.062 0.210 0.144 0.375 0.958 0.039 0.134 0.186 0.202 0.225 nan 0.502 0.665 0.536 0.163 0.401 0.376 2.619 3.617 0.814 0.623 0.461 0.283 0.095 0.125 2.370 3.102 0.246 0.392 1.121 0.627 0.213 0.779 0.806 0.738 0.147 0.375 0.048 0.361 0.031 0.066 1628 chr20 50137181 50160203 + 0 NA intron (NM_001258292, intron 1 of 9) MIR|SINE|MIR 10566 NM_173091 4773 Hs.744148 NM_012340 ENSG00000101096 NFATC2 NFAT1|NFATP nuclear factor of activated T-cells 2 protein-coding 0.823 1.184 0.544 0.139 1.532 0.778 0.251 0.254 0.105 2.937 1.466 2.622 1.902 0.192 0.092 0.638 nan 0.327 0.627 2.116 2.613 1.229 0.490 0.534 0.619 0.294 0.442 0.636 0.890 0.432 0.262 0.828 1.221 0.435 0.241 0.207 0.332 3.240 1.647 0.785 1.156 0.058 0.024 0.251 2.622 0.068 0.532 0.704 0.016 128 chr1 59235215 59253207 + 0 NA Intergenic Intergenic 5574 NM_002228 3725 Hs.696684 NM_002228 ENSG00000177606 JUN AP-1|AP1|c-Jun Jun proto-oncogene, AP-1 transcription factor subunit protein-coding 3.243 2.619 5.404 2.852 2.645 1.557 1.777 2.320 0.247 2.608 1.097 5.103 6.979 0.519 0.100 1.311 2.228 2.149 3.401 7.383 5.318 4.514 2.530 4.780 5.074 2.963 3.996 5.409 7.027 1.698 2.458 1.202 1.811 2.405 1.777 1.533 nan 2.771 1.510 1.446 1.369 0.595 2.246 1.777 5.103 0.833 1.564 0.276 0.550 1922 chr4 153197524 153210779 + 0 NA Intergenic L1ME4a|LINE|L1 -54656 NR_104273 102191832 Hs.712524 NR_104273 ENSG00000270751 FBXW7-AS1 DEAR|DEspR FBXW7 antisense RNA 1 pseudo nan 2.376 0.533 1.114 0.753 0.232 0.301 0.118 0.037 0.498 0.224 1.830 0.774 0.033 0.095 1.141 1.651 7.119 5.214 0.958 0.917 1.166 0.582 1.427 1.626 0.119 0.180 1.236 1.528 0.253 0.185 0.437 1.024 0.145 0.103 0.179 0.215 0.969 0.623 0.050 0.053 0.015 0.098 0.301 1.830 0.092 0.366 0.028 1327 chr19 42745435 42761713 + 0 NA exon (NM_006494, exon 4 of 4) exon (NM_006494, exon 4 of 4) 4477 NM_001308402 2077 Hs.655969 NM_006494 ENSG00000105722 ERF CHYTS|CRS4|PE-2|PE2 ETS2 repressor factor protein-coding 3.988 2.286 2.648 2.029 2.736 1.531 3.170 1.831 0.404 1.242 0.749 2.860 4.809 6.165 0.160 2.443 3.322 2.765 4.124 3.456 3.445 4.419 1.780 6.348 6.521 3.310 4.940 3.739 5.193 2.725 2.568 1.764 2.935 3.105 3.182 2.832 4.269 2.611 1.470 1.471 2.502 0.944 1.673 3.170 2.860 1.332 1.702 1.641 1.420 73 chr1 32525364 32540126 + 0 NA Intergenic AluSg|SINE|Alu -4887 NM_001319677 55116 Hs.25544 NM_018056 ENSG00000121775 TMEM39B - transmembrane protein 39B protein-coding 2.552 nan 2.120 3.174 2.226 1.107 2.533 0.990 0.343 1.535 0.629 5.621 4.976 0.898 0.121 2.303 2.638 1.440 2.080 5.460 5.120 nan 0.675 2.457 2.573 2.414 3.153 1.792 2.804 nan 2.499 1.032 1.690 0.909 0.959 1.467 2.688 1.752 nan 2.354 2.346 0.219 1.970 2.533 5.621 0.668 0.876 0.824 0.671 1982 chr5 59730014 59749596 + 0 NA intron (NM_001165899, intron 1 of 16) intron (NM_001165899, intron 1 of 16) -43735 NR_024617 25859 Hs.146312 NM_001039499 ENSG00000152931 PART1 NCRNA00206 prostate androgen-regulated transcript 1 (non-protein coding) ncRNA nan nan 0.684 0.041 0.244 0.074 0.125 0.118 0.058 0.048 0.085 0.024 0.324 0.055 0.145 0.225 0.096 0.232 0.242 0.192 0.247 nan 0.101 0.126 0.103 4.844 5.280 0.285 0.301 nan 0.265 0.077 0.142 0.073 0.104 0.165 0.395 0.133 0.259 1.312 0.081 0.005 0.307 0.125 0.024 0.020 0.476 0.025 0.101 1375 chr19 56109576 56118392 + 0 NA exon (NM_153219, exon 2 of 2) exon (NM_153219, exon 2 of 2) 2278 NM_153219 147807 Hs.440291 NM_153219 ENSG00000171443 ZNF524 - zinc finger protein 524 protein-coding 4.673 3.068 5.173 4.706 9.269 4.708 5.031 2.801 0.403 2.004 0.787 5.218 8.346 5.635 0.207 7.984 7.557 4.733 6.235 8.912 8.412 8.671 6.144 6.534 7.192 3.954 5.196 7.599 11.505 8.740 7.268 4.614 5.210 5.473 5.834 5.371 6.370 4.253 1.903 5.239 6.233 1.380 3.535 5.031 5.218 1.684 2.484 2.823 2.855 645 chr12 95976121 95989936 + 0 NA Intergenic Intergenic -37762 NM_032147 84101 Hs.646421 NM_032147 ENSG00000136014 USP44 - ubiquitin specific peptidase 44 protein-coding 0.736 0.758 0.884 0.140 0.307 0.127 0.152 0.264 0.220 0.512 0.389 0.562 nan 0.054 0.142 0.313 0.194 0.285 0.829 0.543 0.585 0.769 0.180 0.279 0.281 0.690 nan 0.489 nan 0.388 0.171 0.172 0.282 0.182 0.213 0.341 0.671 3.351 1.594 0.032 0.085 0.028 0.057 0.152 0.562 0.028 0.632 0.044 0.099 2287 chr7 99002948 99008191 + 0 NA intron (NM_014891, intron 1 of 5) MIR|SINE|MIR 736 NM_014891 11333 Hs.632296 NM_014891 ENSG00000106244 PDAP1 HASPP28|PAP|PAP1 PDGFA associated protein 1 protein-coding nan 2.367 nan 4.784 5.448 3.271 4.891 3.780 0.122 5.016 2.041 4.578 6.922 7.328 0.215 7.607 7.184 6.333 9.126 7.854 7.825 7.959 5.862 13.579 15.059 4.786 6.006 5.372 7.862 8.281 8.110 7.494 10.358 6.998 7.971 7.508 nan 7.367 3.362 3.077 4.725 0.907 2.768 4.891 4.578 1.367 1.930 2.072 1.622 1907 chr4 87973739 87997040 + 0 NA intron (NM_001313959, intron 3 of 19) intron (NM_001313959, intron 3 of 19) 57236 NM_005935 4299 Hs.480190 NM_005935 ENSG00000172493 AFF1 AF4|MLLT2|PBM1 AF4/FMR2 family member 1 protein-coding 1.541 0.931 1.218 1.072 2.116 1.029 0.694 0.313 0.096 0.601 0.375 0.858 2.430 0.061 0.057 0.756 1.139 0.760 1.344 2.491 2.318 0.175 0.101 0.311 0.286 1.798 nan 2.570 3.213 2.586 2.306 0.642 1.081 1.241 1.536 1.493 nan 1.028 0.675 1.212 2.548 0.352 0.105 0.694 0.858 0.355 1.205 0.707 2.237 1867 chr3 186499541 186505160 + 0 NA promoter-TSS (NR_002587) promoter-TSS (NR_002587) -235 NR_002587 619567 NR_002587 ENSG00000238942 SNORD2 R39B|SNR39B small nucleolar RNA, C/D box 2 snoRNA 6.616 4.828 3.496 6.767 10.892 6.019 3.721 3.236 0.382 4.450 2.043 5.908 16.029 3.888 0.121 7.168 7.421 7.851 10.548 11.774 11.400 13.563 9.370 13.614 15.174 5.352 6.701 10.297 13.560 15.896 15.378 7.173 11.843 5.733 5.859 12.530 8.436 4.746 2.781 4.057 4.489 1.120 3.189 3.721 5.908 1.364 2.169 2.632 3.466 454 chr11 62301028 62324462 + 0 NA intron (NM_001620, intron 1 of 4) intron (NM_001620, intron 1 of 4) 414 NM_001346446 79026 Hs.502756 NM_001620 ENSG00000124942 AHNAK AHNAKRS|PM227 AHNAK nucleoprotein protein-coding nan 1.072 1.069 0.684 0.614 0.246 1.937 1.404 0.263 0.818 0.195 0.720 1.384 2.132 0.144 1.059 1.477 0.589 1.266 1.291 1.357 2.630 0.982 1.317 1.392 0.495 0.984 3.080 3.137 0.986 0.957 2.611 4.938 1.735 1.329 0.952 1.867 0.776 0.672 2.332 0.830 0.301 0.129 1.937 0.720 0.111 0.190 3.367 0.522 1246 chr19 1587322 1593565 + 0 NA intron (NM_001281454, intron 1 of 6) AluJb|SINE|Alu 2317 NM_001281453 53615 Hs.178728 NM_003926 ENSG00000071655 MBD3 - methyl-CpG binding domain protein 3 protein-coding 4.961 2.497 7.139 4.272 4.937 2.410 3.844 1.798 0.231 3.036 1.265 6.063 5.940 2.799 0.121 5.868 5.371 5.168 7.075 8.992 9.076 4.320 1.898 9.794 9.822 4.336 5.820 5.025 nan 10.220 10.892 2.487 4.378 6.406 5.296 4.881 5.383 3.721 1.949 4.739 4.029 1.186 1.994 3.844 6.063 1.616 2.772 0.934 2.040 1134 chr17 78537794 78630349 + 0 NA intron (NM_001163034, intron 1 of 29) intron (NM_001163034, intron 1 of 29) 65446 NM_001163034 57521 Hs.133044 NM_020761 ENSG00000141564 RPTOR KOG1|Mip1 regulatory associated protein of MTOR complex 1 protein-coding 1.181 1.069 1.232 3.309 0.473 0.268 0.679 0.158 0.136 0.325 0.225 0.657 1.020 0.112 0.122 0.583 0.740 0.345 0.431 1.287 1.381 0.623 0.210 0.382 0.384 nan 1.031 3.734 3.902 1.083 0.764 0.578 0.673 0.479 0.532 1.352 3.141 nan 0.940 0.220 0.751 0.077 0.172 0.679 0.657 0.085 1.350 0.177 1.311 646 chr12 96016249 96048384 + 0 NA Intergenic AluSz|SINE|Alu -10715 NR_077225 100132594 Hs.676211 NR_077225 ENSG00000257150 PGAM1P5 - phosphoglycerate mutase 1 pseudogene 5 pseudo 0.763 0.900 0.663 0.124 0.294 0.129 0.271 3.189 0.479 0.269 0.247 0.473 nan 0.084 0.137 0.252 0.227 1.689 5.994 0.636 0.731 0.353 0.125 0.315 0.309 0.389 nan 0.354 nan 0.383 0.176 0.137 0.200 0.131 0.209 0.383 0.690 0.949 0.849 0.059 0.094 0.033 0.035 0.271 0.473 0.021 0.238 0.028 0.211 1501 chr2 177016001 177030191 + 0 NA Intergenic Intergenic -5709 NM_006898 3232 Hs.93574 NM_006898 ENSG00000128652 HOXD3 HOX1D|HOX4|HOX4A|Hox-4.1 homeobox D3 protein-coding 1.192 0.984 0.647 0.446 0.825 0.316 1.193 0.079 0.028 1.950 1.105 1.851 3.690 0.038 0.081 3.190 3.483 1.223 1.674 2.523 1.940 1.778 0.902 2.891 2.905 2.828 3.532 4.762 7.870 2.892 3.335 2.975 4.085 1.402 1.166 0.257 0.453 1.286 0.769 1.010 0.057 0.262 0.707 1.193 1.851 0.375 0.529 1.549 0.070 9 chr1 3081027 3091074 + 0 NA intron (NM_199454, intron 1 of 16) MIR|SINE|MIR 41511 NR_036215 100422968 NR_036215 ENSG00000283572 MIR4251 - microRNA 4251 ncRNA 1.606 nan 0.955 0.071 1.972 1.051 0.369 0.090 0.016 0.031 0.065 0.072 0.509 0.113 0.073 0.155 0.092 0.119 0.179 0.294 0.317 0.059 0.054 0.170 0.218 1.295 nan nan 0.136 nan 0.123 0.180 0.191 0.033 0.071 0.079 0.095 0.154 0.168 9.298 0.063 0.019 0.007 0.369 0.072 0.745 0.333 0.148 0.025 623 chr12 56726088 56734424 + 0 NA Intergenic AluSp|SINE|Alu -2407 NM_016584 51561 Hs.98309 NM_016584 ENSG00000110944 IL23A IL-23|IL-23A|IL23P19|P19|SGRF interleukin 23 subunit alpha protein-coding nan 1.823 1.348 3.123 2.963 1.642 2.229 1.695 0.193 1.778 0.851 2.683 4.716 1.161 0.136 nan 2.750 3.715 5.819 4.606 nan 9.226 4.951 6.445 7.331 1.978 nan 5.800 nan 1.823 1.562 1.798 2.237 3.233 3.947 2.527 2.961 3.142 1.608 0.845 1.598 0.603 0.836 2.229 2.683 0.630 1.483 1.352 0.828 1703 chr22 20724277 20729421 + 0 NA Intergenic L1M3de|LINE|L1 -21556 NM_001256523 7625 Hs.517418 NM_003426 ENSG00000185252 ZNF74 COS52|ZFP520|ZNF520|hZNF7 zinc finger protein 74 protein-coding 1.315 nan 2.143 3.824 0.278 0.186 0.558 0.074 0.071 2.897 0.908 3.531 4.630 0.099 3.080 4.236 0.200 0.434 3.132 2.597 8.449 2.673 1.056 0.883 0.297 0.474 9.053 8.984 0.364 0.284 1.306 1.897 5.230 6.296 0.132 0.310 8.496 4.421 2.892 2.957 2.108 0.047 0.558 3.531 0.849 2.962 1.620 0.025 385 chr10 132936952 132944104 + 0 NA intron (NM_174937, intron 7 of 11) intron (NM_174937, intron 7 of 11) 47047 NR_120623 101927489 NR_120623 ENSG00000230098 TCERG1L-AS1 - TCERG1L antisense RNA 1 ncRNA 0.433 1.442 0.510 1.943 5.350 2.851 0.310 0.041 0.002 0.132 0.187 9.686 0.951 0.016 0.092 0.216 0.066 0.058 0.107 2.376 3.265 5.882 2.362 0.052 0.067 0.056 0.088 7.653 7.128 0.166 0.075 0.376 0.610 0.573 0.311 0.069 0.076 1.901 1.032 1.098 0.880 0.162 0.022 0.310 9.686 0.083 0.113 0.111 1660 chr20 62762889 62809524 + 0 NA Intergenic Intergenic -9621 NM_004535 4661 Hs.279562 NM_004535 ENSG00000196132 MYT1 C20orf36|MTF1|MYTI|NZF2|PLPB1|ZC2H2C1|ZC2HC4A myelin transcription factor 1 protein-coding 2.158 3.643 2.120 1.045 3.034 1.575 0.850 0.078 0.115 0.992 0.492 4.952 1.684 0.097 0.115 4.346 nan 0.107 0.139 4.360 4.437 2.868 1.210 0.477 0.566 0.720 1.068 2.743 3.813 2.430 2.394 1.518 1.850 0.900 0.673 2.037 3.647 1.887 1.207 5.298 4.401 0.202 0.680 0.850 4.952 0.522 1.076 1.023 1.455 1949 chr5 10348815 10359339 + 0 NA intron (NM_001270661, intron 1 of 22) CpG 326 NM_001270661 10299 Hs.432862 NM_005885 ENSG00000145495 MARCH6 DOA10|MARCH-VI|RNF176|TEB4 membrane associated ring-CH-type finger 6 protein-coding nan nan nan 9.138 4.844 2.136 1.484 3.061 0.459 4.085 2.325 6.473 nan 2.767 0.125 4.281 4.450 4.648 5.637 9.780 9.323 6.068 2.897 4.971 5.187 nan 7.349 5.943 9.655 7.770 8.415 2.472 4.253 7.239 8.198 3.353 nan 3.956 2.391 2.717 4.483 1.507 1.234 1.484 6.473 1.161 2.487 1.474 1.119 66 chr1 27915710 27933860 + 0 NA intron (NM_001029882, intron 1 of 6) intron (NM_001029882, intron 1 of 6) 5220 NM_001029882 27245 Hs.469280 NM_001029882 ENSG00000126705 AHDC1 MRD25 AT-hook DNA binding motif containing 1 protein-coding 2.971 1.538 nan 1.180 1.830 0.963 1.841 0.580 0.116 0.380 0.275 0.787 4.139 0.627 0.100 1.102 2.199 0.640 0.931 6.052 6.070 0.909 0.341 1.283 1.413 2.290 3.429 1.962 2.551 2.705 2.280 0.715 1.227 0.684 0.627 2.863 4.767 1.123 0.632 1.631 1.012 0.279 2.313 1.841 0.787 1.213 0.568 0.429 1.131 2035 chr5 154663252 154672799 + 0 NA Intergenic Intergenic 274710 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 0.983 nan 1.001 0.113 0.524 0.281 0.361 0.077 0.099 0.194 0.295 0.431 0.022 0.091 0.312 0.124 0.263 0.279 0.402 0.280 0.269 0.103 0.039 0.087 0.272 0.469 0.330 0.297 0.566 0.312 0.092 0.119 4.223 6.008 0.745 2.574 1.012 0.656 0.234 0.259 1.365 0.140 0.361 0.295 0.116 0.032 0.052 1.825 2350 chr8 37671209 37684334 + 0 NA intron (NM_032777, intron 2 of 18) MLT2C1|LTR|ERVL 23370 NM_032777 25960 Hs.274136 NM_032777 ENSG00000020181 ADGRA2 GPR124|TEM5 adhesion G protein-coupled receptor A2 protein-coding 1.158 0.574 nan 0.769 0.346 0.127 0.233 2.103 0.531 0.036 0.113 0.237 0.352 0.090 0.088 4.185 4.866 4.138 3.611 0.574 0.659 1.130 0.330 2.367 2.668 0.192 0.445 0.427 0.560 0.540 0.516 1.664 2.625 0.272 0.268 0.961 1.865 0.587 0.697 0.034 0.205 0.051 0.072 0.233 0.237 0.134 0.200 2.118 0.512 421 chr11 19092897 19097801 + 0 NA Intergenic LTR9|LTR|ERV1 -13121 NM_054030 117194 Hs.350566 NM_054030 ENSG00000183695 MRGPRX2 MGRG3|MRGX2 MAS related GPR family member X2 protein-coding 0.661 nan 3.280 1.916 0.471 0.228 0.226 0.119 0.033 0.820 0.373 0.963 1.463 0.066 0.078 nan 12.374 0.585 0.671 3.177 2.355 6.039 3.041 2.706 2.906 0.351 nan 2.124 2.545 0.595 0.497 1.133 1.453 0.171 0.180 0.125 0.175 1.580 nan 0.057 0.162 0.016 0.226 0.963 0.060 0.063 0.160 0.056 796 chr14 57460922 57479977 + 0 NA Intergenic Intergenic 190548 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 2.931 nan 2.395 0.982 0.549 0.336 0.397 0.099 0.094 0.090 0.150 0.872 0.570 0.046 0.119 0.366 0.248 0.303 0.384 0.502 0.531 1.963 0.435 0.486 0.507 0.132 0.203 1.091 0.997 4.153 4.032 0.724 1.564 0.796 0.773 4.105 11.497 nan 0.567 0.041 0.095 0.114 0.674 0.397 0.872 0.132 0.096 1.474 2.068 480 chr11 67346564 67361748 + 0 NA TTS (NM_000852) TTS (NM_000852) 3090 NM_000852 2950 Hs.523836 NM_000852 ENSG00000084207 GSTP1 DFN7|FAEES3|GST3|GSTP|HEL-S-22|PI glutathione S-transferase pi 1 protein-coding nan 2.574 0.893 3.035 1.012 0.581 0.195 0.275 0.138 0.062 0.143 2.328 4.776 1.057 0.128 2.335 2.476 2.047 3.759 3.201 2.830 1.292 0.336 4.064 4.177 0.873 1.376 7.121 8.042 0.484 0.294 2.342 3.270 1.232 1.359 1.570 2.040 0.406 0.423 1.958 0.656 0.182 0.381 0.195 2.328 0.051 0.742 2.375 0.686 2453 chr8 145114663 145120640 + 0 NA Intergenic Intergenic -2045 NM_017570 26873 Hs.305882 NM_017570 ENSG00000178814 OPLAH 5-Opase|OPLA|OPLAHD 5-oxoprolinase (ATP-hydrolysing) protein-coding 1.453 1.456 nan 1.741 1.219 0.632 1.283 0.640 0.215 0.238 0.065 2.164 1.088 1.221 0.065 0.785 0.986 0.190 0.405 nan 1.589 nan 0.398 1.567 1.458 0.508 0.780 1.374 1.882 0.721 0.697 1.384 1.202 0.515 0.395 1.310 2.209 0.898 0.525 0.205 1.441 0.032 0.121 1.283 2.164 1.004 5.144 0.368 0.827 1065 chr17 38218216 38233477 + 0 NA intron (NM_199334, intron 1 of 8) intron (NM_199334, intron 1 of 8) 6778 NM_003250 7067 Hs.724 NM_003250 ENSG00000126351 THRA AR7|CHNG6|EAR7|ERB-T-1|ERBA|ERBA1|NR1A1|THRA1|THRA2|c-ERBA-1 thyroid hormone receptor, alpha protein-coding nan 3.184 1.372 1.402 3.163 1.598 4.170 2.686 0.366 1.943 1.148 2.849 3.989 1.379 0.089 3.048 5.039 1.116 1.444 nan 3.158 1.462 0.490 1.772 1.845 2.019 2.601 5.240 4.749 nan 2.667 1.383 2.574 1.622 1.334 1.353 2.690 2.023 1.095 4.056 2.309 0.560 0.255 4.170 2.849 1.468 1.401 2.010 1.294 1571 chr20 3624992 3668206 + 0 NA Intergenic MER41A|LTR|ERV1 -2553 NM_022139 64096 Hs.302025 NM_022139 ENSG00000125861 GFRA4 - GDNF family receptor alpha 4 protein-coding 0.752 1.002 0.733 0.203 0.228 0.127 0.297 0.103 0.060 0.117 0.092 0.210 0.608 0.073 0.071 0.692 0.782 0.258 0.281 0.837 0.884 0.875 0.236 0.355 0.350 0.394 0.675 6.104 6.021 0.470 0.241 0.454 0.619 0.141 0.097 0.195 0.296 0.866 0.702 3.839 2.661 0.044 0.051 0.297 0.210 0.206 0.209 0.178 0.086 895 chr15 78364840 78382966 + 0 NA Intergenic ORSL-2b|DNA|hAT-Tip100 -3909 NM_015079 23102 Hs.567426 NM_015079 ENSG00000167202 TBC1D2B - TBC1 domain family member 2B protein-coding 0.750 1.044 1.307 0.305 0.600 0.442 0.297 0.792 0.116 0.330 0.231 0.465 1.225 0.293 0.069 3.148 3.695 2.287 1.685 0.601 0.610 1.042 0.367 1.061 1.124 0.804 1.209 0.657 0.816 1.368 1.161 4.456 5.415 0.364 0.357 0.389 0.696 0.594 0.474 0.171 0.338 0.048 0.173 0.297 0.465 0.135 0.447 4.730 0.143 396 chr11 1566737 1596937 + 0 NA intron (NM_004420, intron 3 of 6) intron (NM_004420, intron 3 of 6) 11313 NM_004420 1850 Hs.41688 NM_004420 ENSG00000184545 DUSP8 C11orf81|HB5|HVH-5|HVH8 dual specificity phosphatase 8 protein-coding 1.250 3.029 1.273 0.938 2.429 1.327 0.996 0.475 0.075 1.486 0.515 3.230 4.459 0.190 0.041 2.155 4.263 0.470 0.890 3.469 2.841 3.393 1.855 0.743 0.676 0.599 0.982 2.273 3.562 0.681 0.653 1.437 1.836 2.524 2.114 0.215 0.285 1.076 0.613 1.638 4.436 0.618 0.604 0.996 3.230 0.186 0.071 1.256 0.090 122 chr1 54134753 54154441 + 0 NA intron (NM_147193, intron 1 of 9) intron (NM_147193, intron 1 of 9) 55280 NM_147193 148979 Hs.306691 NM_147193 ENSG00000174332 GLIS1 - GLIS family zinc finger 1 protein-coding 1.215 0.542 0.879 0.148 0.409 0.173 0.294 0.260 0.090 0.079 0.111 0.117 0.379 0.110 0.109 0.352 0.461 0.315 0.619 0.787 0.847 0.716 0.276 0.329 0.422 3.841 4.488 0.423 0.596 1.852 2.758 0.272 0.327 0.126 0.137 0.531 nan 0.403 0.498 0.070 0.109 0.029 0.126 0.294 0.117 0.639 0.061 0.066 0.275 1491 chr2 166317030 166333739 + 0 NA promoter-TSS (NM_001172173) promoter-TSS (NM_001172173) -773 NM_001172173 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 1.694 1.070 nan 0.359 0.563 0.347 2.029 0.377 0.116 0.612 0.553 0.303 0.402 0.059 0.093 2.019 1.471 2.256 1.500 1.102 1.346 3.231 1.138 0.387 0.412 4.437 5.035 0.646 0.748 6.889 6.743 0.309 0.475 0.010 0.009 4.017 6.769 0.788 0.522 0.030 0.208 0.006 0.281 2.029 0.303 0.296 0.364 0.139 1.786 1413 chr2 17718823 17743551 + 0 NA intron (NM_003385, intron 1 of 3) MIRb|SINE|MIR 9380 NM_003385 7447 Hs.444212 NM_003385 ENSG00000163032 VSNL1 HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1 visinin like 1 protein-coding 0.635 0.569 0.789 0.252 0.198 0.149 0.264 0.081 0.071 0.075 0.094 0.044 2.270 0.061 0.105 1.514 1.606 5.232 8.074 0.267 0.366 0.223 0.107 0.570 0.673 1.902 2.445 0.592 nan 1.144 1.103 2.240 2.445 0.047 0.073 0.212 nan 0.287 0.321 0.956 0.406 0.019 0.009 0.264 0.044 0.004 0.024 1.182 0.139 2437 chr8 141516439 141523813 + 0 NA Intergenic Intergenic -1271 NR_023360 54108 Hs.279704 NM_017444 ENSG00000104472 CHRAC1 CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1 chromatin accessibility complex 1 protein-coding 7.001 2.987 nan 7.195 7.616 4.647 4.039 2.650 0.479 1.144 0.571 7.086 16.759 2.606 0.162 3.545 4.132 4.941 7.355 nan 11.062 nan 3.933 11.576 11.988 3.770 4.411 5.238 8.374 4.715 5.055 4.096 5.485 5.395 6.436 4.972 3.938 3.759 1.994 7.907 4.969 1.251 1.990 4.039 7.086 0.873 3.623 1.465 1.622 1103 chr17 60876956 60887314 + 0 NA intron (NM_152598, intron 1 of 10) intron (NM_152598, intron 1 of 10) 1879 NM_001100875 162333 Hs.665663 NM_152598 ENSG00000173838 MARCH10 MARCH-X|RNF190 membrane associated ring-CH-type finger 10 protein-coding 1.725 nan 0.826 0.604 3.188 1.753 1.635 0.159 0.109 0.678 0.308 5.069 2.463 0.137 0.088 2.527 3.558 1.786 1.980 2.286 1.839 1.631 0.518 4.061 4.385 0.282 nan 6.240 8.531 1.292 1.015 0.891 1.177 0.710 0.840 0.395 0.493 1.241 0.921 0.360 3.585 0.073 1.520 1.635 5.069 0.177 1.205 0.295 0.079 1132 chr17 78448190 78476354 + 0 NA Intergenic G-rich|Low_complexity|Low_complexity -11868 NM_002522 4884 Hs.514556 NM_002522 ENSG00000171246 NPTX1 NP1 neuronal pentraxin 1 protein-coding 1.241 0.973 2.425 2.130 0.793 0.355 1.284 0.090 0.080 0.230 0.147 5.060 2.332 0.127 0.088 0.618 0.667 0.246 0.323 4.438 3.453 2.048 0.544 0.289 0.326 nan 1.358 2.315 3.803 1.211 1.291 0.554 0.668 0.505 0.409 2.202 3.311 nan 0.699 1.187 2.001 0.064 1.079 1.284 5.060 0.341 0.869 0.219 1.549 1177 chr18 42303982 42314218 + 0 NA intron (NM_001130110, intron 2 of 3) MIR|SINE|MIR 48237 NM_015559 26040 Hs.435458 NM_015559 ENSG00000152217 SETBP1 MRD29|SEB SET binding protein 1 protein-coding nan 0.855 0.878 0.406 0.334 0.125 1.723 0.717 0.125 0.199 0.136 0.416 0.469 0.042 0.112 4.653 5.484 7.356 7.153 0.699 0.881 0.621 0.253 0.060 0.054 0.611 0.992 0.578 0.556 0.558 0.380 2.013 3.658 0.327 0.411 0.295 nan 1.909 1.575 0.202 0.080 0.112 0.605 1.723 0.416 0.218 0.218 2.512 0.232 1301 chr19 37996310 37999533 + 0 NA promoter-TSS (NR_110723) promoter-TSS (NR_110723) 68 NR_110723 101927720 Hs.18070 NR_110723 ZNF793-AS1 - ZNF793 antisense RNA 1 (head to head) ncRNA 8.553 3.774 0.844 16.645 5.702 3.306 4.941 2.795 0.200 2.719 1.196 8.436 19.495 7.493 0.209 6.136 7.575 4.292 5.552 16.185 14.779 13.087 7.681 26.637 28.485 0.087 0.243 10.885 17.940 nan 10.050 7.271 8.758 8.581 8.710 1.706 2.516 8.148 4.783 6.987 6.316 1.415 2.488 4.941 8.436 2.009 1.471 2.944 0.238 1658 chr20 62669769 62689153 + 0 NA 3' UTR (NM_018419, exon 2 of 2) 3' UTR (NM_018419, exon 2 of 2) 1518 NM_018419 54345 Hs.8619 NM_018419 ENSG00000203883 SOX18 HLTRS|HLTS SRY-box 18 protein-coding 1.621 1.644 3.473 0.289 0.769 0.267 0.219 0.151 0.108 0.238 0.193 0.838 0.942 0.798 0.096 0.962 nan 0.572 0.764 1.102 1.084 1.373 0.417 0.953 1.158 2.740 3.944 0.506 0.589 0.632 0.418 0.677 0.629 0.341 0.302 0.252 0.382 0.715 0.574 0.796 0.238 0.054 0.098 0.219 0.838 0.801 1.282 0.101 0.039 1783 chr3 107882689 107909288 + 0 NA intron (NM_018010, intron 6 of 10) intron (NM_018010, intron 6 of 10) 45429 NM_018010 55081 Hs.412196 NM_018010 ENSG00000114446 IFT57 ESRRBL1|HIPPI|MHS4R2 intraflagellar transport 57 protein-coding nan nan 0.934 0.124 3.977 1.992 0.168 0.189 0.143 1.941 1.331 2.002 0.199 0.024 0.079 0.323 0.264 0.446 0.471 0.849 1.275 6.914 4.285 0.257 0.249 0.525 0.805 0.217 0.237 0.663 0.321 0.124 0.184 1.601 1.899 0.356 0.766 2.071 0.870 0.044 0.073 0.519 0.105 0.168 2.002 0.036 0.181 0.082 0.155 1333 chr19 44306939 44314112 + 0 NA intron (NM_182573, intron 1 of 4) MER1A|DNA|hAT-Charlie -3912 NM_001031749 284348 Hs.44289 NM_182573 ENSG00000159871 LYPD5 PRO4356 LY6/PLAUR domain containing 5 protein-coding 0.720 0.828 0.780 0.074 0.236 0.135 0.212 0.106 0.090 0.195 0.105 0.134 0.258 0.128 0.107 0.453 0.374 9.041 8.828 0.384 0.410 0.931 0.274 0.374 0.441 0.134 0.367 0.233 0.239 0.278 0.123 0.347 0.371 0.204 0.222 0.171 0.229 1.435 0.973 0.039 0.125 0.039 0.033 0.212 0.134 0.021 0.069 0.035 1449 chr2 70309708 70323281 + 0 NA TTS (NM_006196) TTS (NM_006196) 1909 NM_006196 5093 Hs.2853 NM_006196 ENSG00000169564 PCBP1 HEL-S-85|HNRPE1|HNRPX|hnRNP-E1|hnRNP-X poly(rC) binding protein 1 protein-coding nan nan 5.746 7.506 10.045 6.002 6.203 1.921 0.213 3.633 1.576 7.268 9.262 3.443 0.194 8.457 6.869 6.836 9.393 11.539 12.850 8.657 7.810 12.374 13.365 5.545 6.337 10.557 13.342 7.654 6.809 7.088 9.233 4.593 5.363 8.705 7.048 nan 1.232 6.305 6.585 1.085 2.767 6.203 7.268 2.047 3.353 3.647 2.889 559 chr12 7032606 7041199 + 0 NA promoter-TSS (NM_001940) promoter-TSS (NM_001940) -578 NM_001940 1822 Hs.143766 NM_001940 ENSG00000111676 ATN1 B37|D12S755E|DRPLA|HRS|NOD atrophin 1 protein-coding 3.977 nan nan 3.123 3.562 1.963 5.565 1.072 0.151 1.720 1.064 3.774 5.731 5.448 0.209 2.019 3.603 3.202 4.078 nan 10.885 5.042 1.954 5.704 5.739 4.382 5.874 2.227 2.837 2.631 2.423 2.258 4.290 2.586 2.158 2.261 nan 1.472 0.720 4.314 1.968 0.842 4.440 5.565 3.774 6.295 1.084 1.661 1.805 2232 chr7 14016132 14033062 + 0 NA intron (NM_004956, intron 5 of 13) intron (NM_004956, intron 5 of 13) 1542 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding nan 2.544 nan 1.370 1.984 1.115 1.272 3.869 0.106 5.463 2.938 0.964 5.971 0.841 0.168 nan 0.574 0.376 0.436 3.011 2.684 3.295 1.127 2.002 1.992 5.571 6.313 2.783 4.382 1.130 0.985 0.121 0.133 3.387 3.611 0.286 0.415 1.492 0.852 0.750 0.985 0.780 0.711 1.272 0.964 0.149 2.492 0.023 0.051 953 chr16 30437069 30458007 + 0 NA Intergenic L2b|LINE|L2 -6165 NM_024096 79077 Hs.632191 NM_024096 ENSG00000179958 DCTPP1 CDA03|RS21C6|XTP3TPA dCTP pyrophosphatase 1 protein-coding 1.566 1.138 1.385 1.679 1.063 0.639 1.185 0.464 0.132 0.630 0.339 1.149 3.669 0.896 0.104 0.993 1.255 1.023 1.301 1.165 1.114 4.078 1.227 2.907 3.062 1.048 1.493 2.978 5.054 1.438 1.548 1.623 2.034 1.518 1.619 1.374 1.991 1.282 0.755 0.843 0.746 0.225 0.428 1.185 1.149 0.243 0.838 0.616 0.414 1720 chr22 35758038 35781438 + 0 NA Intergenic AluSp|SINE|Alu -7322 NM_002133 3162 Hs.517581 NM_002133 ENSG00000100292 HMOX1 HMOX1D|HO-1|HSP32|bK286B10 heme oxygenase 1 protein-coding nan 1.049 1.094 0.226 0.669 0.397 0.777 0.704 0.282 0.141 0.113 0.460 0.669 0.815 0.114 1.008 1.301 0.996 nan 0.500 0.541 3.373 0.354 0.862 0.859 0.873 nan 0.837 1.344 2.235 1.527 0.406 0.330 0.914 4.624 1.117 nan 0.778 0.502 0.241 0.201 0.062 0.129 0.777 0.460 0.257 0.903 0.152 0.514 630 chr12 58202652 58213317 + 0 NA exon (NM_006576, exon 2 of 19) exon (NM_006576, exon 2 of 19) 1868 NM_006576 10677 Hs.584854 NM_006576 ENSG00000135407 AVIL ADVIL|DOC6|p92 advillin protein-coding nan 0.718 1.069 1.664 0.772 0.389 0.209 0.189 0.107 0.721 0.351 1.738 0.812 0.031 0.063 nan 4.341 1.389 0.682 3.473 nan 1.888 0.489 6.470 6.557 0.520 nan 9.597 nan 0.671 0.683 2.803 3.934 0.220 0.265 0.424 0.675 3.135 1.663 1.137 0.444 0.054 0.110 0.209 1.738 0.064 0.759 2.834 0.173 198 chr1 155188296 155198742 + 0 NA intron (NR_002188, intron 1 of 12) AluJo|SINE|Alu 3806 NR_002188 2630 Hs.719930 NR_002188 ENSG00000160766 GBAP1 GBAP glucosylceramidase beta pseudogene 1 pseudo nan nan 2.532 2.209 2.540 1.031 2.852 2.534 0.771 1.387 1.041 2.301 8.413 2.105 0.165 3.019 2.549 3.601 5.613 4.385 nan 5.140 2.143 1.650 1.953 2.850 3.574 3.368 5.334 3.498 2.711 3.136 3.960 2.163 2.978 3.517 5.024 2.161 1.109 3.248 4.812 0.509 1.192 2.852 2.301 0.784 2.201 1.828 1.586 1022 chr17 16117396 16121700 + 0 NA promoter-TSS (NM_004278) promoter-TSS (NM_004278) -674 NM_006311 9611 Hs.462323 NM_006311 ENSG00000141027 NCOR1 N-CoR|N-CoR1|PPP1R109|TRAC1|hN-CoR nuclear receptor corepressor 1 protein-coding 6.586 3.104 4.368 3.430 4.651 2.119 4.030 1.756 0.222 1.519 1.123 6.308 5.874 2.291 0.036 8.135 7.960 7.854 10.847 8.573 7.867 9.888 3.485 8.457 9.117 2.713 3.675 8.111 11.127 nan 11.894 2.893 5.878 3.815 3.638 9.101 8.959 2.350 0.984 2.249 2.910 0.797 2.891 4.030 6.308 1.996 11.190 1.611 3.417 983 chr16 75086891 75146054 + 0 NA intron (NM_032268, intron 1 of 4) AluJb|SINE|Alu 34198 NM_194436 197257 Hs.380929 NM_153486 ENSG00000166816 LDHD DLD lactate dehydrogenase D protein-coding 1.018 0.937 nan 1.109 0.601 0.335 0.473 0.287 0.082 0.157 0.121 0.671 0.957 0.104 0.088 0.349 0.453 0.256 0.469 0.814 0.825 0.808 0.289 0.610 0.643 0.645 1.025 3.826 4.197 0.909 0.777 0.176 0.271 0.121 0.109 0.317 0.699 1.769 1.020 0.716 0.735 0.018 0.061 0.473 0.671 0.127 1.225 0.057 0.215 535 chr11 128159245 128173442 + 0 NA Intergenic Intergenic 225862 NM_001162422 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 1.058 1.516 0.940 1.438 3.897 1.986 0.340 0.571 0.022 3.835 1.814 2.253 0.786 0.128 0.131 1.745 3.239 2.994 0.699 3.133 3.192 4.786 3.042 0.227 0.295 0.225 0.303 5.740 9.412 0.471 0.401 1.281 1.791 2.014 1.681 0.236 nan 3.265 1.822 1.557 0.044 0.689 0.094 0.340 2.253 0.014 0.301 0.686 0.373 1453 chr2 85472567 85487285 + 0 NA intron (NM_031283, intron 3 of 11) intron (NM_031283, intron 3 of 11) 39151 NR_136323 102724579 Hs.669216 NR_136323 LOC102724579 - uncharacterized LOC102724579 ncRNA nan 1.041 nan 0.274 0.746 0.316 0.355 2.093 0.207 0.159 0.089 0.878 1.064 0.133 0.113 0.850 0.449 1.257 2.491 0.893 0.965 0.990 0.376 0.270 0.339 0.105 0.218 1.120 0.936 0.845 0.527 0.243 0.334 0.148 0.199 2.218 7.572 1.513 0.993 0.584 0.127 0.059 0.103 0.355 0.878 0.052 0.094 0.064 3.451 200 chr1 155512840 155535799 + 0 NA intron (NM_018489, intron 1 of 27) AluSp|SINE|Alu -7453 NR_027023 645676 Hs.568693 NR_027023 ASH1L-AS1 - ASH1L antisense RNA 1 ncRNA nan nan 2.056 1.263 1.573 0.763 1.637 1.186 0.357 1.378 0.853 1.671 4.762 1.252 0.164 2.987 3.322 3.379 4.218 3.433 nan 3.680 1.986 3.015 3.085 2.019 2.608 2.451 4.484 2.428 2.321 3.935 6.861 1.557 2.067 2.611 3.033 1.287 0.751 1.128 2.960 0.394 0.984 1.637 1.671 0.410 1.371 2.821 0.791 2508 chr9 37021923 37038474 + 0 NA intron (NM_001280547, intron 1 of 8) CpG 4278 NM_001280554 5079 Hs.654464 NM_016734 ENSG00000196092 PAX5 ALL3|BSAP paired box 5 protein-coding 1.809 nan 1.021 1.282 1.839 0.852 0.545 0.063 0.106 1.347 0.801 2.434 2.318 0.151 0.065 2.891 3.644 0.577 0.847 2.529 2.302 6.624 1.972 1.972 1.884 1.499 2.073 2.618 3.366 1.797 1.812 3.983 6.281 1.102 1.119 0.726 1.010 2.874 2.173 2.557 0.728 0.126 0.756 0.545 2.434 0.162 0.484 2.481 0.151 1087 chr17 46120685 46140649 + 0 NA intron (NM_001330261, intron 2 of 5) intron (NM_001330261, intron 2 of 5) 4981 NM_003204 4779 Hs.514284 NM_003204 ENSG00000082641 NFE2L1 LCR-F1|NRF1|TCF11 nuclear factor, erythroid 2 like 1 protein-coding 1.712 1.701 nan 2.018 3.032 1.513 1.959 2.452 0.299 1.604 0.726 1.878 4.355 1.567 0.140 3.165 3.503 2.600 3.903 2.478 nan 2.915 1.334 10.350 10.605 1.689 2.133 6.036 nan 3.350 2.780 4.263 4.484 1.976 2.419 2.286 4.888 1.434 0.796 1.544 3.406 0.506 1.163 1.959 1.878 0.588 1.267 1.523 0.922 2026 chr5 145704900 145726003 + 0 NA Intergenic Intergenic -3136 NM_002700 5459 Hs.553499 NM_002700 ENSG00000091010 POU4F3 BRN3C|DFNA15|DFNA42|DFNA52 POU class 4 homeobox 3 protein-coding nan 0.731 0.459 0.116 0.267 0.152 0.116 0.074 0.145 0.089 0.078 0.103 0.810 0.052 0.097 0.186 0.137 0.117 0.112 0.407 0.414 0.334 0.078 0.064 0.070 0.185 0.317 0.219 0.304 0.416 0.262 0.177 0.220 1.160 0.547 0.118 0.190 0.718 0.525 0.039 0.047 0.082 6.483 0.116 0.103 0.069 0.044 0.056 0.053 507 chr11 100547356 100565021 + 0 NA non-coding (NR_133571, exon 2 of 2) non-coding (NR_133571, exon 2 of 2) -2219 NM_152432 143872 Hs.741465 NM_152432 ENSG00000165895 ARHGAP42 GRAF3 Rho GTPase activating protein 42 protein-coding 1.042 1.068 0.846 0.060 0.532 0.300 0.332 0.498 0.110 0.256 0.186 0.028 1.182 0.086 0.076 0.441 0.375 0.599 1.497 0.642 0.560 0.105 0.083 1.714 1.771 4.232 4.744 0.152 0.180 0.592 0.287 0.153 0.312 0.459 0.445 0.632 1.615 1.731 0.979 0.029 0.060 0.076 0.414 0.332 0.028 0.089 0.812 0.045 0.509 2208 chr7 801164 819970 + 0 NA intron (NM_017802, intron 9 of 12) intron (NM_017802, intron 9 of 12) -43254 NM_001164759 5575 Hs.520851 NM_002735 ENSG00000188191 PRKAR1B PRKAR1 protein kinase cAMP-dependent type I regulatory subunit beta protein-coding 1.153 0.711 1.466 0.771 0.452 0.214 0.869 0.152 0.180 0.777 0.540 0.157 nan 0.145 0.145 2.054 1.929 1.045 nan 4.241 3.771 nan 0.076 2.286 2.400 0.496 0.712 nan 0.778 0.194 0.202 0.198 0.234 1.585 1.564 0.280 0.498 1.658 0.907 3.956 1.699 0.360 1.240 0.869 0.157 0.664 0.179 0.032 0.218 1715 chr22 29612128 29624095 + 0 NA intron (NM_001267895, intron 3 of 14) AluJb|SINE|Alu 16210 NM_001267895 129080 Hs.289106 NM_133455 ENSG00000186998 EMID1 EMI5|EMU1 EMI domain containing 1 protein-coding nan 0.466 1.111 0.081 0.261 0.187 0.205 0.120 0.169 0.119 0.085 0.159 0.319 0.080 0.054 0.345 0.448 0.281 nan 0.382 0.335 0.413 0.192 0.533 0.588 0.530 nan 0.320 0.341 0.491 0.299 0.278 0.221 0.150 0.278 0.247 nan 4.055 2.106 0.079 0.089 0.063 0.053 0.205 0.159 0.187 1.247 0.033 0.031 1356 chr19 49117102 49128663 + 0 NA promoter-TSS (NM_000979) promoter-TSS (NM_000979) 92 NM_001204159 56848 Hs.528006 NM_020126 ENSG00000063176 SPHK2 SK 2|SK-2|SPK 2|SPK-2 sphingosine kinase 2 protein-coding 3.704 1.630 2.535 2.513 5.884 3.209 2.393 1.118 0.209 1.083 0.442 3.205 3.670 2.522 0.116 2.965 2.741 3.101 4.442 5.156 4.697 5.539 2.420 7.784 8.077 3.320 4.425 6.264 8.233 6.045 6.062 2.311 3.428 2.627 2.554 3.947 5.153 3.066 1.512 1.294 3.384 0.495 1.166 2.393 3.205 1.370 1.003 1.271 1.880 129 chr1 59267397 59285903 + 0 NA intron (NR_108106, intron 1 of 1) intron (NR_108106, intron 1 of 1) 25827 NR_108106 100131060 Hs.680604 NR_034014 ENSG00000234807 LINC01135 - long intergenic non-protein coding RNA 1135 ncRNA 1.108 1.176 1.163 1.310 0.904 0.606 0.533 0.610 0.174 0.459 0.196 1.655 1.232 0.428 0.121 0.485 0.734 0.535 0.793 1.665 1.405 4.702 1.328 1.375 1.524 1.053 1.603 2.289 2.552 0.529 0.357 0.578 0.731 0.934 1.144 0.327 nan 1.327 0.890 0.212 0.263 0.148 0.447 0.533 1.655 0.147 0.500 0.379 0.111 279 chr1 205598947 205607048 + 0 NA promoter-TSS (NM_021795) promoter-TSS (NM_021795) -997 NM_021795 2005 Hs.497520 NM_001973 ENSG00000158711 ELK4 SAP1 ELK4, ETS transcription factor protein-coding 5.144 4.839 6.827 2.485 3.659 1.905 2.905 2.182 0.238 1.825 0.980 3.156 4.818 2.488 0.182 3.110 3.480 5.231 8.219 6.126 5.373 3.694 2.282 nan nan 2.586 3.556 4.936 7.741 3.336 4.066 1.404 2.106 8.551 8.585 3.700 3.926 2.480 1.609 2.304 4.650 2.427 1.199 2.905 3.156 0.936 1.681 0.756 1.183 2036 chr5 154845669 154866148 + 0 NA Intergenic MLT1G|LTR|ERVL-MaLR 462593 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 1.463 nan 1.242 0.131 0.264 0.157 0.118 0.060 0.039 0.367 0.246 0.362 0.641 0.058 0.145 0.214 0.128 0.140 0.246 0.245 0.347 0.655 0.926 0.050 0.094 0.697 0.889 0.567 0.497 1.950 1.687 0.093 0.135 1.313 1.914 1.456 5.392 1.469 0.812 0.199 0.161 0.582 0.108 0.118 0.362 0.204 0.228 0.063 3.473 1705 chr22 23411064 23424209 + 0 NA intron (NM_002073, intron 1 of 2) intron (NM_002073, intron 1 of 2) 4967 NM_002073 2781 Hs.584760 NM_002073 ENSG00000128266 GNAZ - G protein subunit alpha z protein-coding 1.274 nan 1.364 0.697 0.755 0.452 1.120 0.086 0.061 0.455 0.088 0.901 2.182 0.239 0.066 1.022 1.209 0.690 0.901 1.583 1.552 1.481 0.542 0.777 0.893 1.139 1.806 0.873 1.554 1.069 1.056 0.454 0.880 1.352 1.342 0.640 0.832 3.489 1.826 0.505 0.740 0.469 0.158 1.120 0.901 0.493 0.935 0.271 0.226 894 chr15 78348399 78361724 + 0 NA intron (NM_144572, intron 1 of 12) intron (NM_144572, intron 1 of 12) 14933 NM_144572 23102 Hs.567426 NM_015079 ENSG00000167202 TBC1D2B - TBC1 domain family member 2B protein-coding 1.066 1.386 2.794 0.204 0.431 0.217 0.288 1.791 0.279 0.304 0.235 0.207 0.537 0.060 0.109 0.844 1.085 0.970 1.258 0.403 0.417 0.610 0.291 0.776 0.806 1.513 1.910 0.578 0.753 5.340 4.718 0.658 0.870 0.248 0.289 0.519 1.588 0.556 0.347 0.108 0.206 0.078 0.074 0.288 0.207 0.437 0.159 0.216 0.435 1722 chr22 36846819 36858941 + 0 NA Intergenic AluSp|SINE|Alu 24807 NM_012473 25828 Hs.211929 NM_012473 ENSG00000100348 TXN2 COXPD29|MT-TRX|MTRX|TRX2 thioredoxin 2 protein-coding 1.803 nan 1.291 2.042 4.105 2.151 1.759 0.668 0.559 0.619 0.406 5.667 2.420 0.668 0.179 0.805 1.113 0.778 1.900 3.428 2.777 4.087 0.957 2.331 2.339 0.293 nan 6.433 6.210 nan 1.158 1.086 1.585 1.583 1.569 0.430 0.945 1.905 0.877 3.020 2.633 0.392 1.082 1.759 5.667 2.196 2.921 1.059 0.132 1219 chr18 60036346 60045601 + 0 NA intron (NM_003839, intron 9 of 9) intron (NM_003839, intron 9 of 9) 48453 NM_001270950 8792 Hs.204044 NM_003839 ENSG00000141655 TNFRSF11A CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCER TNF receptor superfamily member 11a protein-coding 0.904 0.778 0.688 0.753 0.977 0.501 0.692 0.145 0.070 0.473 0.376 0.536 0.577 0.058 0.061 0.421 0.320 0.400 0.474 2.122 2.595 2.039 0.834 0.660 nan 1.385 nan 0.590 0.921 0.731 0.413 0.130 0.318 0.955 0.867 0.277 0.376 7.123 4.176 0.348 1.018 0.143 0.078 0.692 0.536 0.252 0.154 0.149 0.214 2467 chr9 2156104 2162767 + 0 NA intron (NM_001289400, intron 1 of 7) intron (NM_001289400, intron 1 of 7) 979 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 0.730 1.767 0.826 0.145 1.890 1.028 0.306 1.528 0.196 4.300 2.135 2.452 0.490 0.244 0.061 0.812 0.645 3.410 8.174 0.758 0.880 9.606 3.843 0.434 0.488 1.024 1.559 0.642 0.773 2.429 1.813 0.889 1.325 3.344 3.839 0.268 nan 8.279 5.024 0.841 1.729 0.313 0.118 0.306 2.452 0.132 0.534 0.788 0.075 880 chr15 66422912 66467406 + 0 NA intron (NM_032445, intron 1 of 22) intron (NM_032445, intron 1 of 22) 100916 NM_032445 84465 Hs.712886 NM_032445 ENSG00000157890 MEGF11 - multiple EGF like domains 11 protein-coding 1.025 1.688 nan 0.126 5.613 2.917 0.644 0.113 0.043 3.742 1.924 1.915 0.589 0.068 0.081 0.506 0.665 0.331 0.521 2.295 1.953 nan 1.915 0.269 0.246 0.705 1.077 2.748 2.314 1.495 1.554 0.740 0.756 4.448 4.117 0.430 0.993 2.957 1.373 0.324 1.008 1.841 0.100 0.644 1.915 0.635 3.448 0.465 0.153 648 chr12 103341697 103366172 + 0 NA 3' UTR (NM_004316, exon 2 of 2) 3' UTR (NM_004316, exon 2 of 2) 2482 NM_004316 429 Hs.703025 NM_004316 ENSG00000139352 ASCL1 ASH1|HASH1|MASH1|bHLHa46 achaete-scute family bHLH transcription factor 1 protein-coding 1.546 3.783 nan 8.288 9.521 5.148 1.919 0.134 0.119 5.975 3.019 7.511 14.604 0.040 0.086 0.183 0.108 0.141 0.181 17.159 14.254 7.101 2.826 0.115 0.133 0.153 0.260 12.639 11.184 0.652 0.449 0.081 0.085 5.191 2.553 0.474 1.101 5.433 2.844 11.692 11.270 0.669 0.178 1.919 7.511 0.091 3.827 0.014 0.091 497 chr11 78166495 78188647 + 0 NA intron (NM_024678, intron 10 of 13) AluSx3|SINE|Alu -36689 NR_120564 101928865 Hs.407574 NR_120564 ENSG00000251323 LOC101928865 - uncharacterized LOC101928865 ncRNA nan 0.722 0.931 0.912 0.386 0.195 0.208 0.113 0.107 0.742 0.325 0.486 0.297 0.130 0.102 1.759 1.972 0.511 0.433 0.597 0.770 4.663 1.906 1.385 1.181 0.523 0.706 1.111 1.295 0.442 0.218 0.325 0.817 1.093 1.069 0.254 0.783 1.091 0.756 0.073 0.107 0.179 0.418 0.208 0.486 0.097 0.110 0.201 0.131 10 chr1 3131713 3140351 + 0 NA intron (NM_199454, intron 2 of 16) intron (NM_199454, intron 2 of 16) 91493 NR_036215 100422968 NR_036215 ENSG00000283572 MIR4251 - microRNA 4251 ncRNA 0.664 nan 0.672 0.041 0.610 0.223 0.090 0.088 0.055 0.030 0.014 0.411 0.025 0.073 0.205 0.147 0.098 0.096 0.298 0.346 0.041 0.078 0.115 0.083 0.207 nan nan 0.076 nan 0.097 0.071 0.122 0.102 0.041 0.079 0.090 0.098 0.262 8.330 0.052 0.055 0.018 0.090 0.014 0.171 0.035 0.023 1021 chr17 15543954 15564403 + 0 NA intron (NM_006470, intron 4 of 8) (CAGAGA)n|Simple_repeat|Simple_repeat -31160 NM_006382 374286 Hs.548021 NM_006382 ENSG00000241322 CDRT1 C170RF1|C17ORF1|C17ORF1A|FBXW10B|FBXW10P1|HREP|SM25H2 CMT1A duplicated region transcript 1 protein-coding 1.413 1.183 0.991 0.583 0.398 0.258 0.542 0.796 0.157 0.100 0.125 0.269 0.729 0.102 0.064 0.448 0.628 1.750 nan 0.524 0.483 2.512 0.791 1.151 1.121 0.632 0.647 2.666 3.286 nan 0.335 0.240 0.224 0.476 0.974 0.549 1.348 0.994 0.576 0.157 0.123 0.065 0.097 0.542 0.269 0.343 4.270 0.048 0.357 868 chr15 59031021 59036490 + 0 NA intron (NM_001320570, intron 1 of 14) intron (NM_001320570, intron 1 of 14) 8422 NM_001110 102 Hs.172028 NM_001110 ENSG00000137845 ADAM10 AD10|AD18|CD156c|CDw156|HsT18717|MADM|RAK|kuz ADAM metallopeptidase domain 10 protein-coding 0.797 0.798 0.940 0.133 0.442 0.123 0.140 0.193 0.105 0.071 0.312 0.430 0.040 0.110 1.606 1.360 11.134 4.627 0.713 0.942 0.231 0.087 2.661 2.752 0.556 0.874 0.563 0.687 1.646 0.805 0.847 1.559 0.137 0.166 0.715 1.371 0.190 0.229 0.061 0.078 0.018 0.058 0.140 0.312 1.026 0.337 551 chr12 6795699 6802138 + 0 NA promoter-TSS (NM_133476) promoter-TSS (NM_133476) -180 NM_001135734 171017 Hs.103315 NM_133476 ENSG00000126746 ZNF384 CAGH1|CAGH1A|CIZ|ERDA2|NMP4|NP|TNRC1 zinc finger protein 384 protein-coding 3.740 nan nan 6.465 3.948 1.995 3.465 1.155 0.026 2.153 0.906 3.831 7.842 3.792 0.208 2.636 2.439 4.044 6.280 nan 7.917 10.032 5.481 7.180 7.484 4.398 5.765 4.189 5.255 5.207 4.617 2.730 4.766 3.733 4.899 3.802 nan 1.881 0.767 2.787 2.805 0.903 3.868 3.465 3.831 6.851 1.069 1.598 1.527 744 chr13 112503940 112527467 + 0 NA Intergenic Intergenic -31989 NR_046992 101928616 Hs.528450 NR_046992 LINC00354 - long intergenic non-protein coding RNA 354 ncRNA 0.600 nan 0.584 2.762 3.887 2.005 5.573 0.054 0.068 0.693 0.296 5.997 2.937 0.032 0.063 0.444 0.256 0.136 0.173 5.710 6.279 1.919 0.771 0.049 0.060 0.022 0.060 4.858 6.113 0.187 0.067 0.385 0.389 1.055 0.725 0.103 0.164 0.673 0.407 3.076 2.982 0.218 0.334 5.573 5.997 0.004 0.082 0.100 0.015 2431 chr8 135557083 135614752 + 0 NA intron (NM_001029939, intron 11 of 16) intron (NM_001029939, intron 11 of 16) -24397 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA nan 1.003 1.380 0.206 0.478 0.206 0.366 0.172 0.083 0.074 0.061 0.183 2.119 0.038 0.074 0.316 0.226 0.279 0.352 1.199 1.138 0.926 0.309 nan 0.844 0.404 0.671 0.381 0.377 0.462 0.365 0.211 0.342 0.177 0.226 0.381 0.775 0.637 0.563 3.451 2.174 0.040 0.109 0.366 0.183 0.068 0.093 0.084 0.236 1359 chr19 49464150 49470132 + 0 NA Intergenic Intergenic -1425 NM_000146 2512 Hs.433670 NM_000146 ENSG00000087086 FTL LFTD|NBIA3 ferritin light chain protein-coding 3.635 1.825 2.318 3.549 4.284 1.694 2.281 1.736 0.187 0.649 0.580 2.259 3.767 3.475 0.093 3.674 4.237 1.809 3.466 5.020 4.390 6.152 1.881 16.504 17.805 2.396 3.119 5.077 7.830 4.645 6.161 2.014 2.451 3.230 4.876 2.908 5.191 3.854 2.164 2.791 3.631 0.524 1.572 2.281 2.259 1.724 5.406 1.280 2.053 46 chr1 17885975 17933633 + 0 NA intron (NM_001319837, intron 1 of 25) intron (NM_001319837, intron 1 of 25) 2756 NM_001011722 55160 Hs.443460 NM_018125 ENSG00000074964 ARHGEF10L GrinchGEF Rho guanine nucleotide exchange factor 10 like protein-coding 1.176 0.799 nan 0.087 1.695 1.052 0.403 1.220 0.186 0.693 0.245 0.327 1.270 0.137 0.110 1.436 2.652 0.394 0.826 1.520 1.422 1.708 0.671 0.719 nan 0.507 nan 2.220 2.037 nan 0.613 0.977 1.508 0.416 0.384 0.424 1.245 0.759 0.626 1.001 1.989 0.096 0.179 0.403 0.327 0.491 0.880 1.263 0.143 1027 chr17 17776334 17796507 + 0 NA intron (NM_001288787, intron 4 of 13) intron (NM_001288787, intron 4 of 13) -46095 NM_001005291 6720 Hs.592123 NM_004176 ENSG00000072310 SREBF1 SREBP-1c|SREBP1|SREBP1a|bHLHd1 sterol regulatory element binding transcription factor 1 protein-coding 1.481 1.335 1.670 0.261 0.518 0.288 0.452 0.430 0.096 0.217 0.134 0.192 1.091 0.060 0.040 0.741 1.748 0.315 nan 0.626 0.759 0.949 0.390 0.266 0.267 0.448 0.845 1.356 1.704 nan 1.398 0.282 0.421 0.297 0.315 0.718 1.359 0.516 0.362 2.826 0.881 0.114 0.780 0.452 0.192 0.240 0.399 0.089 0.683 272 chr1 203456280 203469117 + 0 NA promoter-TSS (NM_014359) promoter-TSS (NM_014359) -573 NM_014359 26254 Hs.632468 NM_014359 ENSG00000188770 OPTC OPT opticin protein-coding 2.309 1.082 7.237 0.131 0.680 0.243 0.872 0.221 0.135 0.466 0.230 0.816 0.863 0.126 0.076 0.824 1.413 0.717 0.938 1.344 1.562 2.363 0.821 nan nan 2.739 3.435 0.331 0.583 2.681 2.739 0.357 0.550 1.313 0.842 0.670 1.919 1.902 1.110 0.030 0.618 0.553 0.180 0.872 0.816 1.022 0.040 0.177 0.433 1755 chr3 20964836 20972511 + 0 NA Intergenic AluSp|SINE|Alu -478545 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 0.558 0.633 0.539 0.046 0.342 0.239 0.083 0.203 0.105 0.102 0.151 0.016 0.194 0.015 0.049 0.743 0.549 6.080 7.081 0.111 0.233 0.092 0.039 0.238 0.166 0.655 0.816 0.369 0.378 nan 0.156 0.449 0.985 0.319 0.347 0.162 0.216 0.545 0.375 0.012 0.023 0.058 0.020 0.083 0.016 0.076 0.019 0.231 0.032 1514 chr2 198377695 198382517 + 0 NA promoter-TSS (NM_199482) promoter-TSS (NM_199482) -189 NM_199482 25843 Hs.633165 NM_015387 ENSG00000115540 MOB4 2C4D|CGI-95|MOB1|MOB3|MOBKL3|PHOCN|PREI3 MOB family member 4, phocein protein-coding 4.061 nan 4.767 5.074 4.475 1.960 2.496 1.755 0.458 1.616 1.077 4.111 9.161 1.735 0.109 3.719 4.121 4.101 5.375 4.851 5.057 4.071 2.005 11.033 11.569 3.330 3.959 5.765 9.377 12.602 13.162 3.398 7.070 2.075 2.374 8.458 12.774 2.366 1.047 1.907 2.078 0.375 1.811 2.496 4.111 1.368 2.863 1.517 7.423 2055 chr6 1756342 1769121 + 0 NA intron (NM_001500, intron 7 of 10) intron (NM_001500, intron 7 of 10) 152050 NM_001453 2296 Hs.348883 NM_001453 ENSG00000054598 FOXC1 ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 1.186 1.387 1.255 1.356 1.989 1.155 0.376 0.759 0.101 0.586 0.342 0.439 0.328 0.051 0.095 0.819 0.767 4.090 8.647 0.500 0.563 1.333 0.283 0.527 0.593 0.459 0.778 2.424 2.104 0.341 0.275 0.485 0.671 0.313 0.477 0.477 1.389 1.408 0.849 0.247 0.702 0.291 0.376 0.439 0.038 0.412 0.164 0.272 2249 chr7 28389551 28399119 + 0 NA intron (NM_182899, intron 1 of 9) intron (NM_182899, intron 1 of 9) 55395 NM_182899 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5 cAMP responsive element binding protein 5 protein-coding 1.858 2.443 1.243 1.853 5.091 2.477 0.987 0.264 0.175 2.600 0.605 4.918 2.123 0.034 0.155 0.445 0.481 0.780 nan 2.737 2.092 4.083 4.098 0.424 0.418 0.206 0.319 2.783 4.601 0.492 0.235 0.265 0.401 3.532 5.437 0.487 nan 3.973 1.857 0.147 1.096 1.075 0.629 0.987 4.918 0.211 2.528 0.103 0.297 1743 chr22 47121305 47135821 + 0 NA intron (NM_022766, intron 1 of 12) L1M5|LINE|L1 5589 NM_022766 64781 Hs.200668 NM_022766 ENSG00000100422 CERK LK4|dA59H18.2|dA59H18.3|hCERK ceramide kinase protein-coding 1.555 1.223 nan 0.484 1.859 1.082 1.436 0.626 0.155 0.941 0.528 2.455 2.033 0.767 0.109 3.522 4.838 1.541 1.939 2.804 2.524 1.600 0.435 1.412 1.400 0.983 1.497 1.822 2.329 1.337 1.493 1.431 2.198 1.269 1.079 0.721 0.710 1.799 1.114 1.580 0.381 0.164 0.607 1.436 2.455 0.770 2.169 1.373 0.265 437 chr11 45115956 45124852 + 0 NA intron (NR_046338, intron 2 of 7) L2c|LINE|L2 4840 NR_046338 56981 Hs.178715 NM_020229 ENSG00000019485 PRDM11 PFM8 PR/SET domain 11 protein-coding nan 1.190 0.833 0.207 0.791 0.377 0.816 0.118 0.036 0.309 0.207 0.210 0.922 0.075 0.134 0.870 1.450 0.240 0.243 0.768 0.795 1.797 0.432 0.083 0.174 1.495 1.864 0.177 0.211 2.304 1.762 0.447 0.384 0.211 0.279 0.300 nan 1.776 0.936 0.443 0.289 0.054 0.027 0.816 0.210 2.427 0.099 0.078 0.055 1631 chr20 50547090 50591718 + 0 NA Intergenic Intergenic -89952 NR_110016 101927678 Hs.683840 NR_110016 ENSG00000227964 LINC01429 - long intergenic non-protein coding RNA 1429 ncRNA 1.153 1.055 0.782 0.128 0.271 0.176 0.266 0.284 0.231 0.162 0.160 0.231 0.337 3.951 0.239 1.018 nan 0.370 0.375 0.278 0.286 1.344 0.352 0.344 0.390 0.485 0.848 0.266 0.364 0.616 0.310 0.302 0.464 0.780 0.906 0.505 1.671 0.378 0.437 0.035 0.092 0.246 0.371 0.266 0.231 0.250 0.173 0.117 0.155 299 chr1 226248030 226256464 + 0 NA intron (NM_002107, intron 2 of 3) intron (NM_002107, intron 2 of 3) 1819 NR_002315 440926 Hs.533624 NR_002315 H3F3AP4 p13 H3 histone, family 3A, pseudogene 4 pseudo 7.677 nan 8.158 8.028 7.683 4.142 4.634 3.343 0.344 4.667 1.718 6.809 10.016 4.808 0.193 8.765 8.226 11.614 15.019 13.221 nan 6.839 2.723 16.169 16.035 3.939 4.905 7.731 11.351 7.838 9.442 2.466 4.228 6.336 5.631 7.121 7.369 3.206 1.615 6.913 3.001 1.704 3.293 4.634 6.809 1.081 2.368 1.409 2.252 425 chr11 31775459 31792952 + 0 NA intron (NM_001288726, intron 10 of 11) intron (NM_001288726, intron 10 of 11) 41580 NM_001310161 5080 Hs.270303 NM_000280 ENSG00000007372 PAX6 AN|AN2|D11S812E|FVH1|MGDA|WAGR paired box 6 protein-coding 0.878 0.953 nan 0.101 0.248 0.110 0.388 0.138 0.074 0.161 0.123 0.062 0.300 0.068 0.121 0.490 0.387 0.202 0.243 0.261 0.388 0.294 0.183 0.290 0.263 5.942 6.420 0.140 0.182 0.509 0.220 0.200 0.357 0.299 0.258 0.290 nan 1.022 0.667 0.120 0.112 0.055 0.158 0.388 0.062 0.079 0.035 0.051 0.114 2554 chr9 131416631 131421099 + 0 NA exon (NM_052844, exon 1 of 9) exon (NM_052844, exon 1 of 9) 264 NM_052844 89891 Hs.495240 NM_052844 ENSG00000119333 WDR34 DIC5|FAP133|SRTD11|bA216B9.3 WD repeat domain 34 protein-coding nan 4.663 4.932 9.507 6.358 3.341 5.671 3.371 0.360 1.780 1.035 6.873 12.458 3.697 0.179 5.825 5.333 6.774 9.443 9.421 10.992 nan 6.034 8.560 8.865 3.377 3.616 10.146 15.911 9.466 8.697 9.333 10.866 9.395 11.224 7.613 4.519 3.548 2.048 8.919 2.884 2.416 3.185 5.671 6.873 1.175 3.965 2.348 1.317 1098 chr17 56488687 56495987 + 0 NA intron (NM_017763, intron 2 of 9) intron (NM_017763, intron 2 of 9) 2606 NM_001305544 54894 Hs.584916 NM_017763 ENSG00000108375 RNF43 RNF124|SSPCS|URCC ring finger protein 43 protein-coding 1.358 2.581 3.499 0.525 0.482 0.372 1.423 0.347 0.147 2.184 1.382 0.705 1.023 0.105 0.112 3.915 4.557 0.689 1.361 0.598 0.693 0.378 0.214 20.889 21.491 0.118 0.342 nan nan 6.176 5.324 3.060 6.508 0.232 0.221 0.721 2.016 1.739 0.670 1.197 0.134 0.032 1.423 0.705 0.251 0.056 3.980 0.320 1316 chr19 41046603 41055365 + 0 NA intron (NM_020971, intron 20 of 35) L1ME4a|LINE|L1 14589 NM_025213 57731 Hs.32706 NM_020971 ENSG00000160460 SPTBN4 QV|SPNB4|SPTBN3 spectrin beta, non-erythrocytic 4 protein-coding 1.517 0.764 2.003 0.186 0.644 0.292 0.126 0.222 0.260 0.110 0.067 0.287 0.911 0.161 0.099 0.365 0.442 0.212 0.315 0.480 0.469 0.394 0.104 0.250 0.343 1.044 1.328 0.293 0.310 7.463 5.465 0.408 0.376 0.263 0.340 1.066 3.636 2.244 0.953 1.637 0.153 0.065 0.574 0.126 0.287 1.779 0.774 0.068 0.972 589 chr12 26250010 26280294 + 0 NA Intergenic Intergenic 12851 NM_030762 79365 Hs.177841 NM_030762 ENSG00000123095 BHLHE41 BHLHB3|DEC2|SHARP1|hDEC2 basic helix-loop-helix family member e41 protein-coding nan nan nan 3.053 0.193 0.080 0.067 0.846 0.059 0.268 0.172 0.059 1.018 0.183 0.120 0.765 1.399 0.796 1.534 0.365 0.395 0.689 0.188 6.012 6.435 1.027 1.333 1.138 1.613 0.893 0.671 4.221 5.897 0.097 0.202 0.752 1.115 0.417 0.311 0.053 0.442 0.050 0.097 0.067 0.059 0.238 0.553 5.376 0.429 55 chr1 23849870 23859199 + 0 NA non-coding (NR_110799, exon 3 of 3) non-coding (NR_110799, exon 3 of 3) 3178 NM_004091 1870 Hs.194333 NM_004091 ENSG00000007968 E2F2 E2F-2 E2F transcription factor 2 protein-coding 4.742 2.867 nan 6.536 3.385 1.858 2.017 0.769 0.103 3.195 1.135 3.458 11.450 2.680 0.123 3.416 3.081 1.956 3.623 14.043 12.059 5.081 1.696 4.026 4.600 4.540 5.611 6.626 8.636 5.270 5.201 1.448 2.013 4.548 5.170 3.742 5.392 3.218 1.635 8.036 5.953 1.325 3.121 2.017 3.458 1.560 1.742 0.444 1.368 662 chr12 109740283 109750577 + 0 NA intron (NM_213596, intron 2 of 9) intron (NM_213596, intron 2 of 9) 1595 NM_213596 121643 Hs.528316 NM_213596 ENSG00000139445 FOXN4 - forkhead box N4 protein-coding 2.335 1.586 nan 1.238 2.450 1.503 0.799 0.180 0.108 0.599 0.302 2.290 2.207 0.704 0.094 1.657 2.357 0.648 2.097 2.561 2.418 4.057 1.542 0.497 0.647 1.353 1.965 1.624 2.223 1.846 2.309 1.403 3.672 3.812 3.248 1.234 1.620 2.148 1.032 0.726 6.859 1.322 2.878 0.799 2.290 0.537 0.020 2.963 0.831 144 chr1 77978541 77982597 + 0 NA intron (NM_174858, intron 10 of 13) intron (NM_174858, intron 10 of 13) 167774 NM_015534 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding nan 0.797 0.973 0.135 0.123 0.116 0.160 4.480 0.240 0.130 0.082 0.172 0.392 0.855 0.141 0.501 0.449 11.569 11.758 0.362 nan 0.357 0.221 0.417 0.337 0.644 nan 0.521 0.558 0.366 0.253 0.354 0.625 0.032 0.062 0.409 0.813 0.805 0.459 0.022 0.024 0.038 0.160 0.172 0.075 0.164 2149 chr6 52147544 52158314 + 0 NA Intergenic AluSq2|SINE|Alu -3250 NM_001270472 4172 Hs.179565 NM_002388 ENSG00000112118 MCM3 HCC5|P1-MCM3|P1.h|RLFB minichromosome maintenance complex component 3 protein-coding 3.378 1.342 nan 1.871 2.346 1.116 1.974 1.485 0.180 1.200 0.579 1.912 2.889 1.018 0.146 2.385 1.966 1.629 2.126 2.252 2.396 3.330 1.558 2.475 2.764 1.988 2.611 5.063 7.426 4.552 4.371 1.460 2.017 3.851 4.941 3.566 3.971 2.441 1.379 1.271 0.570 0.838 0.398 1.974 1.912 0.486 1.262 0.523 1.030 477 chr11 67033895 67046800 + 0 NA intron (NM_001619, intron 1 of 20) intron (NM_001619, intron 1 of 20) 6442 NM_001619 156 Hs.83636 NM_001619 ENSG00000173020 GRK2 ADRBK1|BARK1|BETA-ARK1 G protein-coupled receptor kinase 2 protein-coding nan 0.963 2.242 1.784 2.438 1.113 1.478 0.941 0.124 0.870 0.345 2.531 1.388 0.726 0.094 3.579 5.335 1.277 1.964 3.705 3.558 2.788 1.056 2.847 2.724 1.188 1.549 4.797 5.263 0.922 0.866 2.274 3.736 1.053 1.195 0.793 0.881 1.511 0.887 0.606 1.738 0.227 0.786 1.478 2.531 1.012 2.205 1.599 0.238 747 chr13 113854180 113880280 + 0 NA intron (NM_001008895, intron 2 of 19) L1MEc|LINE|L1 3411 NM_001008895 8451 Hs.339735 NM_003589 ENSG00000139842 CUL4A - cullin 4A protein-coding 1.873 nan 1.832 2.073 1.691 0.921 3.234 0.797 0.173 0.522 0.262 1.911 2.178 0.768 0.098 3.296 3.221 1.567 2.587 2.773 2.376 2.761 1.225 2.339 2.425 0.387 0.608 2.616 4.177 1.611 2.074 1.681 2.620 2.515 3.045 1.809 1.739 0.488 0.324 2.161 2.897 0.532 2.721 3.234 1.911 0.645 0.882 0.775 0.602 2333 chr7 149569857 149577826 + 0 NA intron (NM_001100592, intron 2 of 2) Charlie2a|DNA|hAT-Charlie -2890 NR_027040 401431 Hs.556998 NM_001008745 ENSG00000204934 ATP6V0E2-AS1 - ATP6V0E2 antisense RNA 1 ncRNA 3.601 1.435 4.520 1.525 1.617 0.768 1.994 0.609 0.082 1.563 0.832 2.305 3.669 0.913 0.104 3.038 4.565 4.017 3.664 3.208 2.339 3.259 1.283 2.372 2.483 2.613 3.696 2.125 3.131 4.015 4.467 1.905 3.111 2.340 1.789 1.629 2.127 2.459 nan 1.446 2.063 0.364 0.947 1.994 2.305 1.886 1.051 1.123 0.656 1963 chr5 36870905 36881467 + 0 NA promoter-TSS (NM_015384) promoter-TSS (NM_015384) 610 NR_046262 646719 Hs.355684 NR_046262 NIPBL-AS1 NIPBL-AS NIPBL antisense RNA 1 (head to head) ncRNA 2.995 3.251 nan 6.841 2.604 1.220 2.657 5.041 0.365 3.293 2.084 3.755 8.793 2.415 0.129 4.060 4.384 3.850 5.416 7.654 7.354 3.907 2.088 9.323 9.491 5.391 5.974 5.107 7.296 12.846 10.306 5.726 10.701 3.013 3.663 5.539 5.561 2.671 1.353 1.165 3.379 0.912 2.098 2.657 3.755 1.149 2.734 3.731 2.334 655 chr12 104668655 104709949 + 0 NA intron (NM_001261446, intron 2 of 13) intron (NM_001261446, intron 2 of 13) -8208 NM_001008394 493861 Hs.659857 NM_001008394 ENSG00000255150 EID3 NS4EB|NSE4B|NSMCE4B EP300 interacting inhibitor of differentiation 3 protein-coding 1.565 1.988 nan 1.640 1.164 0.525 0.628 1.182 0.351 0.650 0.498 0.966 2.420 4.174 0.233 1.215 1.453 1.577 2.902 1.709 1.613 2.529 0.753 3.536 3.928 1.868 2.247 1.686 2.679 1.755 1.933 0.934 1.354 2.398 3.574 1.235 1.499 1.798 1.055 0.752 1.333 0.471 0.598 0.628 0.966 0.313 0.661 0.736 0.392 745 chr13 112560044 112635967 + 0 NA Intergenic Intergenic -28619 NR_120392 100505996 Hs.654853 NR_120392 ENSG00000224243 LINC00403 - long intergenic non-protein coding RNA 403 ncRNA 0.588 nan 0.786 0.762 1.033 0.510 1.324 0.066 0.068 0.273 0.164 3.266 1.902 0.033 0.067 0.452 0.236 0.119 0.232 6.825 6.286 0.715 0.292 0.049 0.055 0.042 0.069 2.732 2.718 0.292 0.160 0.369 0.443 0.260 0.249 0.115 0.169 0.499 0.305 1.231 1.143 0.037 0.190 1.324 3.266 0.013 0.034 0.139 0.036 190 chr1 154703010 154725541 + 0 NA intron (NM_001204087, intron 3 of 8) intron (NM_001204087, intron 3 of 8) -113819 NM_001025107 103 Hs.12341 NM_001111 ENSG00000160710 ADAR ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136 adenosine deaminase, RNA specific protein-coding nan nan 2.349 0.284 1.009 0.647 2.253 0.099 0.079 0.389 0.192 0.262 4.004 0.055 0.099 0.680 0.966 0.378 0.662 2.265 nan 2.277 0.658 0.206 0.191 0.541 0.968 2.967 4.058 0.893 0.708 0.889 1.150 0.452 0.750 0.511 0.830 0.996 0.783 1.087 2.428 0.076 0.103 2.253 0.262 0.233 0.413 0.215 0.083 1490 chr2 162270306 162282723 + 0 NA intron (NM_006593, intron 4 of 5) intron (NM_006593, intron 4 of 5) 3909 NM_006593 10716 Hs.210862 NM_006593 ENSG00000136535 TBR1 TBR-1|TES-56 T-box, brain 1 protein-coding 0.978 5.639 nan 0.628 0.531 0.297 0.282 0.120 0.013 0.205 0.205 0.414 1.098 0.174 0.063 0.455 0.307 0.532 0.739 0.822 0.848 1.204 0.526 0.607 0.586 0.340 0.583 0.270 0.285 0.847 0.855 0.310 0.418 0.215 0.187 0.644 1.090 0.812 0.482 0.040 0.086 0.027 0.336 0.282 0.414 0.062 0.432 0.085 1.716 282 chr1 211430352 211434997 + 0 NA promoter-TSS (NM_001136224) promoter-TSS (NM_001136224) -34 NM_001136224 55758 Hs.356399 NM_018254 ENSG00000117625 RCOR3 - REST corepressor 3 protein-coding 10.177 7.712 9.305 5.264 10.562 6.177 9.016 4.673 0.937 5.225 2.643 9.214 16.763 7.585 0.134 8.058 10.515 11.367 15.003 16.461 14.352 8.055 3.267 20.092 20.085 6.404 nan 11.358 14.881 8.495 10.392 3.441 6.170 9.401 7.109 9.246 11.863 4.015 1.969 7.812 4.994 2.600 4.880 9.016 9.214 2.439 4.958 2.850 4.534 2176 chr6 129917118 129931818 + 0 NA intron (NM_033515, intron 10 of 14) L1PB2|LINE|L1 106902 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 0.895 0.962 0.693 0.142 0.247 0.131 0.463 0.918 0.102 0.394 0.241 0.033 0.319 0.015 0.129 0.814 0.985 0.471 0.783 0.216 0.228 9.729 3.285 0.854 1.025 0.485 0.699 0.316 0.363 1.507 1.563 0.294 0.578 4.871 6.556 0.353 0.699 1.497 0.618 0.011 0.066 0.899 0.145 0.463 0.033 0.053 0.192 0.379 0.160 2089 chr6 21141803 21147122 + 0 NA intron (NM_017774, intron 13 of 15) MIRc|SINE|MIR 367661 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 1.179 0.972 nan 0.263 1.019 0.482 0.529 0.171 0.052 0.120 0.216 0.813 nan 0.102 0.063 0.709 0.918 8.260 8.836 0.663 0.796 nan 0.295 1.061 1.159 1.106 1.514 0.477 0.467 0.708 0.382 0.298 0.636 0.299 0.297 0.349 1.015 0.852 0.637 0.433 0.181 0.036 0.118 0.529 0.813 0.076 0.058 0.055 0.277 2518 chr9 76590738 76597610 + 0 NA Intergenic AluY|SINE|Alu -392273 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA nan nan nan 0.153 1.191 0.562 0.094 0.318 0.093 0.411 0.207 5.792 0.179 0.031 0.095 0.256 0.141 0.162 nan 3.073 nan 0.098 0.105 0.191 0.326 0.066 0.151 3.261 5.073 0.203 0.091 0.057 0.115 0.036 0.103 0.189 0.285 1.029 0.503 0.008 0.064 0.094 5.792 0.041 1.330 0.015 0.019 915 chr16 725337 731714 + 0 NA TTS (NM_001278720) TTS (NM_001278720) 1252 NR_136337 105371184 Hs.121180 NR_136337 ENSG00000260394 LOC105371184 LA16c-313D11.9 uncharacterized LOC105371184 pseudo 2.758 nan 2.223 3.576 2.780 1.566 1.503 0.667 0.104 1.919 0.573 4.314 7.390 1.552 0.063 2.439 3.219 0.823 1.476 3.350 2.753 nan 2.519 3.186 3.321 1.308 nan 3.593 5.320 2.103 2.010 1.304 2.908 3.877 2.790 1.629 2.143 2.768 1.479 5.786 11.344 0.702 0.812 1.503 4.314 0.855 1.425 1.985 0.891 2005 chr5 92899710 92952426 + 0 NA intron (NM_005654, intron 2 of 2) intron (NM_005654, intron 2 of 2) 7025 NM_005654 7025 Hs.519445 NM_005654 ENSG00000175745 NR2F1 BBOAS|BBSOAS|COUP-TFI|EAR-3|EAR3|ERBAL3|NR2F2|SVP44|TCFCOUP1|TFCOUP1 nuclear receptor subfamily 2 group F member 1 protein-coding nan 9.108 2.728 0.217 0.541 0.294 5.684 0.818 0.109 0.247 0.210 0.002 1.519 6.618 0.176 0.272 0.179 1.128 1.032 0.817 0.613 3.090 1.252 0.203 0.209 1.214 1.617 0.588 0.591 0.554 0.340 0.115 0.173 12.244 8.347 0.205 nan 1.908 1.117 0.414 0.752 3.379 0.509 5.684 0.002 0.099 1.268 0.016 0.199 1017 chr17 8053399 8068854 + 0 NA Intergenic AluSx|SINE|Alu 5068 NM_001330125 6844 Hs.25348 NM_014232 ENSG00000220205 VAMP2 SYB2|VAMP-2 vesicle associated membrane protein 2 protein-coding 2.829 2.462 2.298 1.251 3.342 1.677 2.940 1.798 0.186 0.875 0.458 2.510 5.538 2.387 0.090 2.982 4.179 3.473 5.639 5.338 4.230 5.056 2.844 2.738 2.777 1.384 1.923 4.027 7.049 1.778 1.639 1.487 2.155 1.180 1.273 4.982 9.156 0.634 0.388 1.540 2.012 0.218 1.630 2.940 2.510 0.522 3.325 0.905 3.195 158 chr1 109674726 109683886 + 0 NA intron (NM_001284352, intron 1 of 20) intron (NM_001284352, intron 1 of 20) 22721 NM_001284352 57535 Hs.708190 NM_020775 ENSG00000116299 KIAA1324 EIG121 KIAA1324 protein-coding 1.214 nan nan 1.477 0.654 0.380 0.442 0.442 0.072 0.496 0.161 1.589 0.568 0.144 0.129 0.463 0.568 0.243 0.355 1.379 nan 8.812 2.772 0.424 0.438 2.094 2.493 nan nan 0.378 0.268 1.021 1.028 0.436 0.496 0.498 nan 1.985 0.939 0.383 0.668 0.051 0.078 0.442 1.589 0.185 0.101 1.038 0.175 397 chr11 2268381 2294721 + 0 NA Intergenic Intergenic 10631 NM_005170 430 Hs.152475 NM_005170 ENSG00000183734 ASCL2 ASH2|HASH2|MASH2|bHLHa45 achaete-scute family bHLH transcription factor 2 protein-coding 0.406 1.288 0.877 0.073 0.252 0.122 0.131 0.065 0.098 0.082 0.107 0.118 0.792 0.054 0.053 6.525 9.576 4.480 3.016 0.265 0.330 0.506 0.142 8.919 8.986 0.154 0.192 0.204 0.300 0.223 0.102 4.529 8.155 0.243 0.159 0.073 0.093 0.304 0.288 0.541 0.054 0.022 0.015 0.131 0.118 0.015 0.008 5.394 0.028 2063 chr6 7121221 7157040 + 0 NA intron (NM_001003700, intron 1 of 11) intron (NM_001003700, intron 1 of 11) 31044 NM_001003698 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 1.532 2.118 2.623 2.061 1.553 0.756 0.455 0.265 0.153 1.045 0.569 4.114 2.254 0.482 0.142 3.276 4.354 1.640 2.268 2.191 2.549 1.814 0.623 1.695 1.835 0.867 1.206 4.498 5.034 0.774 0.538 1.533 2.443 2.689 2.977 1.335 2.341 2.795 1.506 1.665 2.185 0.719 0.972 0.455 4.114 0.282 1.291 1.878 0.430 1623 chr20 48749979 48790394 + 0 NA non-coding (NR_027889, exon 1 of 7) non-coding (NR_027889, exon 1 of 7) 149 NM_001162505 387521 Hs.744839 NM_199129 ENSG00000240849 TMEM189 KUA transmembrane protein 189 protein-coding nan nan 1.155 1.002 0.847 0.504 1.005 1.001 0.368 0.346 0.253 1.122 1.493 2.412 0.160 2.656 3.700 1.161 2.325 1.222 1.104 nan 0.662 1.635 1.684 1.041 1.629 2.259 2.762 nan 1.002 1.014 1.654 0.366 0.653 0.654 1.071 1.169 0.803 0.644 0.435 0.059 0.366 1.005 1.122 0.250 1.201 0.465 0.268 834 chr14 99810908 99825402 + 0 NA Intergenic Intergenic -80105 NM_138576 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IMD49|RIT1|ZNF856B|hRIT1-alpha B-cell CLL/lymphoma 11B protein-coding 1.244 0.475 0.696 0.074 0.216 0.207 0.341 0.094 0.078 0.043 0.061 0.083 0.275 0.060 0.078 0.298 0.258 0.128 0.114 0.518 0.514 0.128 0.067 0.169 0.175 5.145 5.064 0.250 0.336 1.675 1.468 0.186 0.223 0.090 0.188 0.333 0.567 0.340 0.608 0.097 0.110 0.046 1.358 0.341 0.083 0.698 0.021 0.034 0.263 626 chr12 57470968 57488931 + 0 NA Intergenic Intergenic -2728 NM_001330305 4665 Hs.159223 NM_005967 ENSG00000166886 NAB2 MADER NGFI-A binding protein 2 protein-coding nan 1.815 1.297 0.979 1.641 1.026 2.076 2.131 0.358 0.542 0.406 1.048 3.292 4.223 0.154 nan 2.346 2.929 4.171 2.830 nan 1.845 0.897 1.850 2.043 1.170 nan 1.714 nan 2.609 2.910 0.889 1.593 1.034 1.402 2.416 3.121 1.102 0.705 0.876 1.194 0.242 0.787 2.076 1.048 0.753 0.888 1.054 1.026 1718 chr22 34458420 34474726 + 0 NA Intergenic MER46C|DNA|TcMar-Tigger -150157 NM_133642 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding nan 0.572 1.008 0.049 0.207 0.089 0.127 0.051 0.050 0.019 0.061 0.066 0.218 0.007 0.061 0.273 0.158 0.131 nan 0.217 0.256 0.077 0.040 0.051 0.058 0.151 nan 0.203 0.293 1.420 1.562 0.146 0.143 0.031 0.058 1.151 5.631 0.259 0.291 0.007 0.062 0.012 0.030 0.127 0.066 0.030 0.081 0.051 2.585 1056 chr17 36896884 36910477 + 0 NA intron (NM_007144, intron 2 of 10) intron (NM_007144, intron 2 of 10) 878 NM_007144 7703 Hs.371617 NM_007144 ENSG00000277258 PCGF2 MEL-18|RNF110|ZNF144 polycomb group ring finger 2 protein-coding nan 3.784 2.493 2.021 7.734 3.950 4.191 2.000 0.418 2.570 1.799 6.116 16.055 4.249 0.113 4.200 6.618 3.923 5.082 nan 6.911 6.392 2.385 8.005 8.541 3.440 5.063 7.276 9.814 nan 7.747 1.753 3.478 4.285 3.519 3.264 5.963 3.347 1.594 5.261 3.668 1.508 1.915 4.191 6.116 1.513 3.067 1.827 2.334 1822 chr3 147109597 147112812 + 0 NA promoter-TSS (NR_033118) promoter-TSS (NR_033118) -987 NR_033119 84107 Hs.415766 NM_032153 ENSG00000174963 ZIC4 - Zic family member 4 protein-coding 0.632 nan nan 0.054 0.327 0.052 0.279 2.979 0.300 1.315 0.614 0.204 0.160 2.865 0.116 0.417 0.199 5.585 7.902 0.086 0.173 nan 0.075 27.405 28.157 0.533 nan 13.601 20.889 nan 18.698 0.220 0.183 0.071 0.016 2.250 1.335 0.330 0.287 0.358 0.030 0.025 0.279 0.204 2.108 0.083 0.202 1998 chr5 82111285 82119407 + 0 NA Intergenic L2|LINE|L2 -20628 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 0.785 1.145 0.628 0.021 1.046 0.592 0.350 0.261 0.020 0.080 0.134 0.088 0.252 0.093 0.201 0.721 0.421 9.450 3.469 0.462 0.421 0.077 0.007 0.141 0.161 0.450 0.551 0.206 0.196 0.578 0.300 0.127 0.213 0.964 1.129 0.267 nan 0.419 0.470 0.027 0.144 0.094 0.194 0.350 0.088 0.012 0.050 0.012 0.060 2389 chr8 92664754 92676908 + 0 NA Intergenic THE1B|LTR|ERVL-MaLR 359077 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 translocation partner 1 protein-coding nan 0.945 2.261 0.188 0.362 0.200 0.125 0.120 0.079 0.026 0.066 0.166 0.277 0.009 0.087 0.201 0.305 0.268 nan 0.559 0.721 0.427 0.153 0.187 0.111 1.569 1.559 0.667 0.700 5.701 5.907 0.106 0.157 0.287 0.438 1.831 5.786 0.299 0.302 0.050 0.089 0.063 1.195 0.125 0.166 0.548 0.041 0.065 5.017 1188 chr18 45720381 45764119 + 0 NA intron (NM_001318841, intron 2 of 4) MER4D1|LTR|ERV1 -78570 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding nan 2.008 0.803 1.439 0.484 0.238 1.416 0.076 0.056 0.433 0.134 1.745 3.831 0.030 0.068 0.440 0.476 0.368 0.514 3.931 4.321 3.274 1.433 0.136 0.169 0.195 0.322 4.294 3.184 0.620 0.514 0.196 0.265 0.828 1.199 0.199 nan 4.884 2.564 3.772 1.218 0.177 0.089 1.416 1.745 0.065 1.208 0.066 0.104 591 chr12 27903287 27908343 + 0 NA intron (NM_021821, intron 7 of 7) HY1|scRNA|scRNA 18394 NM_001146221 100287284 Hs.202178 NM_001146221 ENSG00000205693 MANSC4 - MANSC domain containing 4 protein-coding nan nan nan 0.766 1.216 0.948 2.676 0.059 0.032 0.174 0.195 0.753 0.622 0.156 0.097 0.215 0.222 0.776 1.737 0.584 0.721 3.083 0.423 0.993 0.943 0.586 0.887 3.352 4.045 0.404 0.283 0.204 0.370 2.471 3.643 0.516 1.114 1.412 0.807 0.154 0.185 0.453 0.536 2.676 0.753 10.882 0.263 0.137 0.316 1931 chr4 190532736 190536285 + 0 NA Intergenic Intergenic -46250 NR_121679 101928971 Hs.519164 NR_121679 ENSG00000250739 LINC01262 TCONS_l2_00021807 long intergenic non-protein coding RNA 1262 ncRNA 0.500 0.559 nan 0.147 0.168 0.236 0.072 0.063 0.114 0.045 0.070 0.203 0.171 0.074 2.718 1.968 10.615 11.658 0.306 0.310 0.003 0.018 1.838 1.802 0.106 0.173 0.071 0.112 0.290 0.111 1.359 1.875 0.059 0.086 0.071 0.116 0.286 0.170 0.015 0.050 0.054 0.023 0.072 0.203 0.058 0.363 0.034 939 chr16 15236954 15248828 + 0 NA Intergenic Intergenic 5968 NR_037466 100500852 NR_037466 ENSG00000264115 MIR3180-4 mir-3180-4 microRNA 3180-4 ncRNA 1.889 1.575 nan 2.098 2.213 1.122 1.981 0.969 0.354 1.106 0.540 1.425 2.871 1.771 0.152 1.565 2.400 0.526 0.743 1.437 1.396 2.531 0.928 1.913 1.889 1.096 1.542 5.084 6.535 nan 1.537 1.011 1.920 0.966 0.973 0.995 1.336 1.239 0.811 0.693 1.302 0.363 0.812 1.981 1.425 0.525 3.124 0.871 0.438 2527 chr9 106849520 106862150 + 0 NA promoter-TSS (NM_001042551) promoter-TSS (NM_001042551) -706 NM_006444 10592 Hs.119023 NM_006444 ENSG00000136824 SMC2 CAP-E|CAPE|SMC-2|SMC2L1 structural maintenance of chromosomes 2 protein-coding 2.439 2.062 1.978 8.012 5.293 2.565 1.453 0.980 0.140 3.159 1.756 5.465 8.445 1.132 0.110 1.770 1.928 3.914 6.034 5.106 5.240 5.538 3.997 3.946 4.190 1.848 2.290 10.824 20.253 5.075 4.729 1.191 1.983 5.882 4.766 2.204 2.271 nan 1.978 1.089 1.712 1.330 0.915 1.453 5.465 0.310 1.633 0.729 0.948 1562 chr20 303791 311334 + 0 NA 3' UTR (NM_006943, exon 1 of 1) 3' UTR (NM_006943, exon 1 of 1) 1347 NM_006943 6666 Hs.43627 NM_006943 ENSG00000177732 SOX12 SOX22 SRY-box 12 protein-coding 5.514 4.555 3.596 5.243 3.746 1.923 3.922 1.201 0.170 1.616 0.842 3.267 11.850 4.080 0.107 5.540 7.193 2.500 3.568 4.747 3.087 7.529 2.262 8.770 9.319 3.464 5.047 7.749 9.968 7.963 10.450 2.264 5.156 4.953 3.032 6.625 7.121 1.640 0.660 2.921 7.624 1.247 2.128 3.922 3.267 1.642 4.545 3.121 3.018 814 chr14 75099632 75109559 + 0 NA Intergenic MIRb|SINE|MIR -25561 NM_000428 4053 Hs.512776 NM_000428 ENSG00000119681 LTBP2 C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3 latent transforming growth factor beta binding protein 2 protein-coding 2.205 1.155 1.728 0.891 0.245 0.083 0.728 0.165 0.097 0.118 0.135 0.158 0.571 0.064 0.096 0.401 0.287 0.166 0.279 0.528 0.631 1.154 0.286 0.630 0.682 0.292 0.681 1.901 nan 6.253 6.056 0.217 0.261 0.757 0.627 1.675 6.381 1.681 nan 0.381 0.407 0.231 0.086 0.728 0.158 1.134 0.052 0.010 8.638 111 chr1 46917061 46933279 + 0 NA Intergenic LTR16A|LTR|ERVL -9794 NR_121680 101929651 Hs.638707 NR_121680 ENSG00000224863 LINC01398 - long intergenic non-protein coding RNA 1398 ncRNA nan 0.859 nan 0.142 0.712 0.268 0.419 0.138 0.089 0.385 0.187 1.410 0.857 0.227 0.113 0.295 0.454 0.312 0.341 4.206 4.457 0.551 0.186 0.453 0.529 0.207 nan nan 1.156 0.867 0.829 0.352 nan 0.161 0.152 0.489 1.254 0.471 0.502 0.155 0.197 0.046 0.109 0.419 1.410 0.085 0.113 0.066 0.072 1019 chr17 8149028 8154199 + 0 NA promoter-TSS (NR_046431) promoter-TSS (NR_046431) -200 NR_046431 80169 Hs.156055 NM_025099 ENSG00000178971 CTC1 AAF-132|AAF132|C17orf68|CRMCC|tmp494178 CST telomere replication complex component 1 protein-coding 7.719 3.462 3.907 4.228 5.350 2.407 4.684 1.334 0.744 2.265 1.100 5.981 8.174 2.209 0.127 6.913 6.193 6.023 8.930 9.908 6.401 15.136 6.950 13.284 13.516 4.394 6.095 9.499 14.418 4.691 5.790 1.912 2.896 7.493 6.274 10.134 12.484 1.816 0.979 2.143 3.434 1.043 1.171 4.684 5.981 2.153 4.124 0.940 4.037 343 chr10 13177395 13185231 + 0 NA Intergenic Intergenic -22241 NM_182751 55388 Hs.198363 NM_018518 ENSG00000065328 MCM10 CNA43|DNA43|PRO2249 minichromosome maintenance 10 replication initiation factor protein-coding nan 0.701 0.817 0.323 0.409 0.164 0.317 0.297 0.230 0.101 0.083 0.342 0.257 0.068 0.085 0.457 0.349 0.301 0.408 1.217 1.345 1.640 0.325 0.168 0.288 0.427 0.585 1.505 1.673 0.660 1.093 0.131 0.229 0.503 0.411 0.270 0.497 0.332 0.369 0.044 0.443 0.049 4.423 0.317 0.342 0.176 0.052 0.025 0.215 2245 chr7 27165620 27181029 + 0 NA Intergenic Intergenic -2925 NM_002141 3201 Hs.533357 NM_002141 ENSG00000197576 HOXA4 HOX1|HOX1D homeobox A4 protein-coding 1.557 1.234 0.999 0.069 0.857 0.384 0.160 0.132 0.135 0.438 0.252 1.794 1.036 2.289 0.171 7.237 13.139 9.029 nan 2.371 2.153 0.321 0.138 0.611 0.678 0.835 1.257 1.997 2.484 1.490 1.717 2.443 3.573 0.614 0.457 0.271 nan 1.619 0.966 0.469 0.857 0.247 0.367 0.160 1.794 0.309 0.040 1.601 0.097 92 chr1 38476919 38483309 + 0 NA intron (NM_016037, intron 1 of 7) intron (NM_016037, intron 1 of 7) 1730 NM_016037 51118 Hs.472038 NM_016037 ENSG00000183520 UTP11 CGI-94|CGI94|UTP11L UTP11, small subunit processome component homolog (S. cerevisiae) protein-coding 23.140 nan 3.220 4.049 1.224 0.472 1.194 1.515 0.250 1.405 0.554 2.828 3.382 1.696 0.235 2.203 1.719 2.420 3.497 3.632 3.390 nan 1.031 4.960 4.983 2.810 3.734 9.872 11.795 nan 2.803 2.746 3.656 0.957 1.399 3.398 6.375 1.834 nan 1.149 0.778 0.193 0.758 1.194 2.828 0.575 0.894 1.149 1.962 325 chr1 247486992 247502205 + 0 NA intron (NM_001329733, intron 2 of 9) CpG 644 NM_032752 84838 Hs.168677 NM_032752 ENSG00000162714 ZNF496 NIZP1|ZFP496|ZKSCAN17|ZSCAN49 zinc finger protein 496 protein-coding nan 1.997 nan 5.730 2.358 1.349 2.223 0.852 0.115 2.920 0.961 2.399 2.235 0.928 0.097 2.717 3.056 3.186 4.579 4.012 3.859 7.213 2.497 4.555 4.747 1.226 2.010 3.196 4.200 2.088 2.336 0.666 1.219 2.079 1.840 2.616 2.521 2.759 1.541 0.877 0.938 0.407 0.918 2.223 2.399 0.427 1.605 0.202 1.311 2264 chr7 56172321 56184880 + 0 NA Intergenic MLT1F1|LTR|ERVL-MaLR -4277 NM_016139 51142 Hs.389996 NM_016139 ENSG00000106153 CHCHD2 C7orf17|MNRR1|NS2TP|PARK22 coiled-coil-helix-coiled-coil-helix domain containing 2 protein-coding nan 2.068 1.462 1.096 1.083 0.511 0.681 0.582 0.255 0.737 0.442 1.038 1.979 0.985 0.177 1.540 1.553 1.472 2.513 1.594 1.513 2.346 0.944 2.801 3.020 1.249 1.391 5.907 7.263 1.648 1.658 0.860 1.266 1.601 1.824 1.292 1.406 1.148 0.763 0.701 0.347 0.311 0.412 0.681 1.038 0.241 0.766 0.337 0.372 1724 chr22 37857568 37888146 + 0 NA intron (NM_001166343, intron 4 of 6) intron (NM_001166343, intron 4 of 6) 9568 NM_001166343 4242 Hs.517603 NM_002405 ENSG00000100060 MFNG - MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase protein-coding 1.679 nan 0.588 0.070 0.347 0.157 0.548 0.124 0.120 0.087 0.068 0.271 0.775 0.117 0.110 3.230 4.117 0.221 0.279 1.211 0.778 0.469 0.132 0.617 0.671 0.203 nan 0.713 1.067 nan 1.719 1.195 1.509 0.170 0.252 0.285 0.454 0.295 0.335 0.770 1.117 0.053 1.575 0.548 0.271 1.661 0.623 0.649 0.036 974 chr16 52572332 52614128 + 0 NA intron (NR_033920, intron 3 of 3) intron (NR_033920, intron 3 of 3) -11516 NM_001146188 27324 Hs.132574 NM_001080430 ENSG00000103460 TOX3 CAGF9|TNRC9 TOX high mobility group box family member 3 protein-coding nan nan nan 3.870 2.090 0.971 1.862 0.077 0.077 0.162 0.114 3.411 4.422 0.034 0.083 0.483 0.415 0.217 0.229 3.850 3.502 2.922 0.636 3.067 3.080 1.124 nan 8.534 nan nan 0.468 0.200 0.289 0.668 0.561 0.412 nan nan 0.660 1.619 1.810 0.098 0.297 1.862 3.411 0.189 1.065 0.062 0.094 2265 chr7 57545895 57556181 + 0 NA Intergenic HSATII|Satellite|Satellite 41155 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding nan 3.957 3.559 0.476 1.105 0.875 0.837 0.468 5.651 0.605 1.566 0.307 1.577 0.296 1.654 1.156 0.490 0.362 0.532 0.876 1.324 0.475 0.347 0.725 0.512 1.089 1.453 0.695 0.823 1.468 0.450 0.564 1.047 0.427 0.688 0.616 0.997 0.361 0.674 0.223 0.449 0.275 0.232 0.837 0.307 0.196 0.175 0.425 0.413 963 chr16 31468793 31472629 + 0 NA 5' UTR (NM_001105247, exon 1 of 6) 5' UTR (NM_001105247, exon 1 of 6) 394 NM_001105247 79798 Hs.732945 NM_024742 ENSG00000140691 ARMC5 AIMAH2 armadillo repeat containing 5 protein-coding 5.538 2.777 4.318 7.128 5.843 3.477 4.345 2.801 0.297 1.879 0.524 5.004 14.125 3.862 0.078 5.264 5.441 4.759 7.380 5.615 4.489 12.966 5.839 11.884 12.770 4.918 5.993 11.060 15.697 7.465 8.107 3.899 5.865 6.357 6.714 3.826 5.832 3.807 1.835 4.504 3.438 1.241 2.438 4.345 5.004 1.630 4.490 1.646 1.477 1211 chr18 55096394 55115786 + 0 NA intron (NM_004852, intron 1 of 1) CpG 3173 NM_004852 9480 Hs.194725 NM_004852 ENSG00000119547 ONECUT2 OC-2|OC2 one cut homeobox 2 protein-coding nan 1.023 1.734 1.081 1.093 0.551 2.655 0.054 0.060 0.557 0.371 1.344 3.869 0.269 0.059 2.012 2.572 1.070 0.865 2.572 2.332 2.382 0.668 0.468 0.558 1.050 1.408 1.315 1.686 1.064 1.308 1.290 2.518 3.975 4.714 0.517 0.900 nan 1.913 0.502 0.798 1.143 2.011 2.655 1.344 0.275 1.240 1.386 0.083 544 chr12 1097387 1103690 + 0 NA non-coding (NR_027948, exon 1 of 20) non-coding (NR_027948, exon 1 of 20) 164 NR_027948 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 5.551 nan nan 7.742 2.807 1.802 2.996 5.278 0.373 2.874 1.450 2.377 7.690 4.478 0.185 2.642 3.180 4.538 6.406 nan 9.378 8.044 3.683 9.028 9.890 6.379 7.872 5.444 9.201 5.772 6.237 3.113 5.882 7.311 6.645 4.869 nan 4.623 2.312 2.557 3.480 1.422 4.542 2.996 2.377 3.031 1.149 2.130 1.454 2444 chr8 143775779 143783253 + 0 NA Intergenic MER65C|LTR|ERV1 -2013 NM_001160354 54742 Hs.69517 NM_017527 ENSG00000160886 LY6K CT97|HSJ001348|URLC10|ly-6K lymphocyte antigen 6 complex, locus K protein-coding 1.299 0.928 nan 0.130 0.549 0.280 2.463 1.027 0.387 0.042 0.022 0.449 1.834 0.014 0.047 0.282 0.403 0.157 0.259 nan 0.964 nan 0.074 0.427 0.421 0.138 0.318 0.131 0.090 0.585 0.442 1.059 0.899 0.133 0.186 0.190 0.283 0.597 0.712 10.299 0.881 0.038 0.095 2.463 0.449 0.594 0.040 0.077 0.034 2405 chr8 106326523 106340107 + 0 NA intron (NM_012082, intron 1 of 7) intron (NM_012082, intron 1 of 7) 2168 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 0.787 nan nan 0.184 0.266 0.165 0.066 0.911 0.077 0.046 0.075 0.071 2.045 1.500 0.105 0.305 0.279 0.326 0.407 0.359 0.422 nan 0.247 0.593 0.655 4.765 nan 1.219 nan nan 4.676 0.134 0.315 0.046 0.093 0.606 nan 0.291 0.297 0.012 0.046 0.021 0.066 0.071 0.580 0.029 0.047 1.094 2319 chr7 135741953 135761113 + 0 NA Intergenic Intergenic -89329 NM_145808 136319 Hs.602015 NM_145808 ENSG00000105887 MTPN GCDP|V-1 myotrophin protein-coding nan nan nan 0.264 0.777 0.403 0.174 0.414 0.092 0.236 0.136 0.068 0.331 0.085 0.183 0.544 0.603 0.403 0.245 0.373 0.426 nan 2.765 0.230 0.224 0.155 nan 0.773 0.932 nan 0.182 0.261 0.340 2.062 1.791 0.731 2.034 2.687 nan 0.247 0.163 0.451 0.095 0.174 0.068 0.045 0.584 0.042 0.303 1008 chr17 7135058 7147566 + 0 NA intron (NM_024297, intron 1 of 4) CpG 937 NM_001284518 79142 Hs.644724 NM_024297 ENSG00000040633 PHF23 hJUNE-1b PHD finger protein 23 protein-coding 4.759 2.146 3.124 3.240 4.258 2.545 3.517 1.909 0.250 1.165 0.526 4.287 7.606 11.101 0.379 5.297 6.065 4.795 6.400 8.158 7.305 6.047 2.477 8.037 8.547 3.570 4.901 6.920 9.708 3.441 3.409 1.671 3.047 2.858 3.505 7.350 8.799 2.167 0.963 3.450 2.628 0.671 1.742 3.517 4.287 1.774 3.349 1.446 3.082 1893 chr4 47074098 47093017 + 0 NA intron (NM_000812, intron 3 of 8) intron (NM_000812, intron 3 of 8) 50262 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 0.934 nan nan 0.112 0.180 0.094 0.087 0.075 0.047 0.239 0.190 0.070 0.153 0.023 0.092 0.438 0.346 0.171 0.249 0.137 0.179 0.132 0.093 0.236 0.239 1.382 1.529 0.179 0.208 2.310 2.749 0.125 0.227 0.035 0.083 1.971 5.595 0.385 0.383 0.015 0.047 0.010 0.084 0.087 0.070 0.257 0.054 0.031 1.959 1463 chr2 105458347 105490167 + 0 NA 3' UTR (NM_006236, exon 1 of 1) 3' UTR (NM_006236, exon 1 of 1) 3731 NM_006236 5455 Hs.248158 NM_006236 ENSG00000198914 POU3F3 BRN1|OTF8|brain-1|oct-8 POU class 3 homeobox 3 protein-coding 0.407 nan 0.397 0.059 0.212 0.112 1.870 0.066 0.025 0.225 0.112 0.064 10.667 0.035 0.062 0.256 0.240 0.356 0.451 3.417 2.814 0.130 0.071 0.121 0.126 0.148 0.255 0.505 0.745 4.585 6.448 0.210 0.559 0.035 0.067 0.076 0.158 1.201 0.740 0.021 0.011 0.003 2.163 1.870 0.064 0.023 0.038 0.216 0.031 500 chr11 85950243 85958168 + 0 NA Intergenic Intergenic -1221 NM_003797 8726 Hs.503510 NM_003797 ENSG00000074266 EED HEED|WAIT1 embryonic ectoderm development protein-coding 1.837 2.057 1.574 2.944 2.875 1.864 1.384 0.830 0.060 1.426 0.711 1.934 5.524 2.396 0.087 6.737 5.885 7.426 6.005 5.847 6.541 4.205 3.198 11.327 12.426 3.423 3.660 4.752 6.093 4.605 3.888 3.212 5.500 4.082 4.761 2.982 3.058 2.289 1.270 2.390 2.184 0.864 1.781 1.384 1.934 4.023 1.118 1.386 0.966 1386 chr2 690174 695687 + 0 NA Intergenic Intergenic -15491 NM_152834 129787 Hs.43899 NM_152834 ENSG00000151353 TMEM18 - transmembrane protein 18 protein-coding 0.578 0.439 0.628 0.063 0.402 0.123 0.165 0.106 0.116 0.196 0.216 0.131 0.789 0.058 0.129 0.373 0.180 0.264 0.478 0.778 0.824 0.154 0.087 0.229 0.248 0.201 0.362 0.478 0.551 0.351 0.156 0.202 0.273 0.054 0.055 0.116 0.219 0.611 0.512 0.122 0.258 0.043 0.165 0.131 0.069 4.953 0.036 2167 chr6 114166714 114183272 + 0 NA Intergenic Intergenic -3521 NM_002356 4082 Hs.519909 NM_002356 ENSG00000277443 MARCKS 80K-L|MACS|PKCSL|PRKCSL myristoylated alanine rich protein kinase C substrate protein-coding nan 2.918 nan 4.772 5.797 3.057 4.354 2.634 0.183 1.350 0.644 2.414 10.355 1.774 0.099 5.696 7.446 4.919 6.790 11.216 nan nan 2.923 6.875 7.221 3.035 nan 2.215 3.494 7.762 9.009 2.862 5.931 3.382 2.508 6.582 nan 1.457 1.072 4.668 3.851 0.924 1.730 4.354 2.414 1.538 1.552 3.525 2.382 292 chr1 216853613 216902448 + 0 NA intron (NM_001243511, intron 2 of 7) intron (NM_001243511, intron 2 of 7) 18784 NM_001438 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR3|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 1.385 1.364 6.557 0.675 2.157 1.248 0.435 0.128 0.082 1.342 0.790 0.725 nan 0.058 0.112 0.425 0.337 0.449 0.654 1.047 1.156 nan 0.357 0.601 0.665 1.651 nan 0.357 0.422 3.182 2.940 0.110 0.198 3.710 4.072 4.700 6.720 0.985 0.775 0.019 0.096 0.729 1.430 0.435 0.725 0.296 0.293 0.057 2.319 775 chr14 35999926 36025879 + 0 NA intron (NM_194301, intron 39 of 39) AluSz6|SINE|Alu 9654 NM_032594 84684 Hs.62813 NM_032594 ENSG00000168348 INSM2 IA-6|IA6|mlt1 INSM transcriptional repressor 2 protein-coding 1.564 1.084 1.023 0.338 0.628 0.229 1.313 0.155 0.155 0.133 0.149 0.310 0.960 0.096 0.131 0.369 0.300 0.131 0.206 0.608 0.668 3.210 1.193 0.267 0.219 1.285 1.692 0.861 0.821 1.187 0.876 0.327 0.697 0.382 0.303 1.765 3.496 0.592 0.457 0.185 0.157 0.147 0.565 1.313 0.310 0.105 0.340 0.107 0.191 2524 chr9 100565059 100573489 + 0 NA Intergenic MIR|SINE|MIR -46263 NM_004473 2304 Hs.159234 NM_004473 ENSG00000178919 FOXE1 FKHL15|FOXE2|HFKH4|HFKL5|NMTC4|TITF2|TTF-2|TTF2 forkhead box E1 protein-coding 1.123 1.983 1.621 2.198 1.024 0.552 2.607 0.144 0.119 0.909 0.465 0.309 2.769 0.310 0.059 1.086 1.382 1.259 4.045 2.292 1.979 5.708 2.816 1.051 1.219 0.442 0.738 1.879 nan 1.860 2.215 0.701 0.684 7.027 6.887 0.387 0.527 nan 0.929 0.334 0.697 2.204 0.386 2.607 0.309 0.687 0.188 0.211 0.029 374 chr10 115610616 115616999 + 0 NA promoter-TSS (NM_198514) promoter-TSS (NM_198514) 168 NM_014881 9937 Hs.1560 NM_014881 ENSG00000198924 DCLRE1A PSO2|SNM1|SNM1A DNA cross-link repair 1A protein-coding 3.568 nan 4.111 3.676 6.912 3.640 1.921 2.680 0.326 2.276 1.116 5.692 8.136 2.497 0.128 6.034 5.524 7.568 9.781 4.063 4.205 9.157 5.550 14.126 15.001 3.517 3.968 11.507 17.020 4.126 3.698 4.711 7.047 4.152 4.746 4.694 3.560 3.007 1.323 2.365 3.161 0.841 1.856 1.921 5.692 0.640 3.308 2.799 1.881 1706 chr22 23448047 23461911 + 0 NA intron (NM_002073, intron 2 of 2) intron (NM_002073, intron 2 of 2) 29262 NM_014433 27156 Hs.526920 NM_014433 ENSG00000100218 RSPH14 RTDR1 radial spoke head 14 homolog protein-coding 1.369 nan 2.989 0.688 0.492 0.246 1.121 0.092 0.012 1.132 0.283 1.251 1.331 0.071 0.052 0.568 1.167 0.312 0.503 3.729 2.853 2.532 1.249 0.820 0.804 1.101 1.855 1.830 2.888 1.307 1.540 0.334 0.364 2.376 2.775 0.553 0.911 5.772 3.305 1.536 0.926 0.736 0.127 1.121 1.251 0.778 3.068 0.100 0.329 2016 chr5 134811729 134849557 + 0 NA Intergenic Intergenic 40996 NM_006161 4762 Hs.248149 NM_006161 ENSG00000181965 NEUROG1 AKA|Math4C|NEUROD3|bHLHa6|ngn1 neurogenin 1 protein-coding 2.488 1.016 nan 0.123 0.690 0.331 1.754 0.081 0.093 0.096 0.077 2.726 1.320 0.057 0.088 0.284 0.279 0.351 0.979 3.183 3.419 2.246 0.549 0.176 0.248 1.805 2.283 0.397 0.379 2.772 3.005 0.168 0.359 1.080 0.680 1.162 3.820 0.508 0.368 0.340 2.597 0.282 1.245 1.754 2.726 0.961 0.043 0.136 1.903 1032 chr17 27043300 27049831 + 0 NA promoter-TSS (NM_000984) promoter-TSS (NM_000984) -435 NM_000984 6147 Hs.419463 NM_000984 ENSG00000198242 RPL23A L23A|MDA20 ribosomal protein L23a protein-coding 6.434 nan nan 1.686 5.539 2.435 2.855 3.934 0.760 0.885 0.519 3.333 5.641 7.712 0.202 7.489 7.822 6.238 9.643 4.873 4.749 6.635 2.690 9.645 10.250 2.765 4.056 10.595 13.265 10.503 11.882 6.005 9.130 3.677 4.134 8.047 8.570 3.750 1.496 4.460 1.536 0.409 1.676 2.855 3.333 1.399 1.671 3.664 5.250 1581 chr20 17548583 17551837 + 0 NA promoter-TSS (NM_006870) promoter-TSS (NM_006870) -345 NM_001278608 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 6.030 nan 8.485 7.608 3.681 2.591 5.161 10.175 0.546 2.622 1.240 6.685 13.275 2.997 0.073 9.091 12.239 8.911 13.193 8.921 6.424 10.452 3.603 8.390 8.268 2.811 4.183 10.541 13.234 4.164 5.251 2.406 8.022 7.539 5.377 2.912 3.818 2.242 1.554 4.642 3.724 2.029 1.625 5.161 6.685 5.003 6.335 3.252 0.634 121 chr1 54082862 54098564 + 0 NA intron (NM_147193, intron 1 of 9) intron (NM_147193, intron 1 of 9) 109164 NM_147193 148979 Hs.306691 NM_147193 ENSG00000174332 GLIS1 - GLIS family zinc finger 1 protein-coding 1.324 0.616 0.883 0.100 0.331 0.265 0.171 0.248 0.113 0.091 0.102 0.094 0.490 0.055 0.081 0.373 0.444 0.309 0.401 0.554 0.648 0.370 0.229 0.357 0.330 3.285 3.310 0.303 0.508 1.545 1.627 0.267 0.348 0.088 0.103 0.369 nan 0.515 0.484 0.068 0.125 0.016 0.110 0.171 0.094 0.507 0.045 0.032 0.172 1483 chr2 145251968 145283091 + 0 NA intron (NM_001171653, intron 2 of 8) intron (NM_001171653, intron 2 of 8) -9652 NR_040248 100303491 Hs.560789 NR_040248 ENSG00000238057 ZEB2-AS1 ZEB2-AS|ZEB2AS|ZEB2NAT ZEB2 antisense RNA 1 ncRNA 1.953 nan 0.901 0.606 2.371 1.072 0.704 2.097 0.181 0.923 0.628 0.566 2.296 0.131 0.059 0.316 0.255 6.663 9.563 2.090 1.405 0.328 0.107 0.233 0.294 3.078 3.524 0.389 0.484 1.697 1.748 0.216 0.467 0.036 0.047 1.728 2.949 0.470 0.345 0.100 0.086 0.015 0.550 0.704 0.566 0.436 0.059 0.181 1.086 1999 chr5 88075136 88084518 + 0 NA intron (NM_001193347, intron 4 of 11) intron (NM_001193347, intron 4 of 11) 39917 NM_001308002 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 0.687 1.435 0.595 0.169 0.203 0.240 0.327 1.550 0.051 0.200 0.178 0.102 1.040 0.569 0.115 0.530 0.635 7.076 10.710 0.459 0.339 0.531 0.256 0.266 0.334 1.912 2.059 0.414 0.436 0.310 0.148 1.016 2.092 0.126 0.267 0.243 nan 0.416 0.308 0.077 0.370 0.010 0.009 0.327 0.102 0.031 0.076 2.322 0.130 2310 chr7 115102111 115139010 + 0 NA Intergenic Intergenic -249151 NR_126407 104355291 NR_126407 ENSG00000233607 LINC01392 - long intergenic non-protein coding RNA 1392 ncRNA nan 0.629 0.899 0.112 0.272 0.126 0.742 0.182 0.104 0.195 0.208 0.517 0.245 0.059 0.175 0.431 0.231 0.167 0.280 0.161 0.219 0.116 0.088 0.228 0.242 0.402 0.585 0.302 0.364 0.415 0.218 0.160 0.262 7.471 8.437 0.292 0.594 0.517 0.498 0.041 0.093 2.431 0.069 0.742 0.517 0.050 0.036 0.053 0.081 1943 chr5 3590740 3599179 + 0 NA Intergenic CpG -1209 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 0.244 0.459 0.713 0.135 0.156 0.115 1.967 0.116 0.132 0.145 0.127 1.165 1.219 0.076 0.075 2.630 2.091 0.416 nan 6.929 5.950 0.051 0.028 0.033 0.048 0.065 0.189 nan 0.109 nan 11.801 1.821 5.188 0.029 0.071 0.067 0.044 0.102 nan 0.006 0.182 0.023 0.609 1.967 1.165 0.931 0.049 1.499 0.044 753 chr14 21849043 21853545 + 0 NA intron (NM_007192, intron 1 of 25) intron (NM_007192, intron 1 of 25) 1131 NM_007192 11198 Hs.213724 NM_007192 ENSG00000092201 SUPT16H CDC68|FACTP140|SPT16|SPT16/CDC68 SPT16 homolog, facilitates chromatin remodeling subunit protein-coding 9.525 4.108 3.990 7.832 5.486 3.342 4.591 5.424 0.227 1.807 1.232 4.581 9.617 5.874 0.190 5.363 5.053 9.409 12.753 8.546 9.400 9.220 5.791 13.713 15.071 8.219 10.578 9.491 13.781 18.022 16.504 5.843 8.030 8.206 10.434 5.367 5.383 4.289 2.317 6.539 4.733 1.608 3.679 4.591 4.581 4.921 3.947 1.930 1.517 14 chr1 6293412 6310299 + 0 NA Intergenic CpG -2397 NM_001024598 390992 Hs.532677 NM_001024598 ENSG00000173673 HES3 bHLHb43 hes family bHLH transcription factor 3 protein-coding 2.375 nan 1.457 0.202 1.306 0.719 0.984 0.615 0.153 0.632 0.361 0.784 4.320 1.104 0.101 1.140 1.601 1.147 1.522 2.762 2.584 1.917 0.734 1.760 1.712 1.400 nan nan 9.270 nan 1.688 1.299 1.807 0.938 1.206 1.821 2.273 1.036 0.605 2.374 0.939 0.181 0.420 0.984 0.784 0.534 0.661 0.381 0.553 548 chr12 6637131 6651394 + 0 NA promoter-TSS (NM_001256799) promoter-TSS (NM_001256799) -123 NM_001256799 2597 Hs.544577 NM_002046 ENSG00000111640 GAPDH G3PD|GAPD|HEL-S-162eP glyceraldehyde-3-phosphate dehydrogenase protein-coding 3.648 nan nan 6.085 4.022 2.037 3.513 0.590 0.101 1.417 1.214 3.102 7.876 3.257 0.175 1.957 2.198 4.045 5.741 nan 6.736 9.389 2.939 3.120 3.209 2.508 3.559 3.339 4.150 3.983 5.612 1.797 2.929 3.776 3.850 3.440 nan 1.163 0.750 3.384 3.270 0.959 3.627 3.513 3.102 3.594 1.296 1.393 1.618 1423 chr2 25620241 25628254 + 0 NA intron (NM_001256308, intron 14 of 17) intron (NM_001256308, intron 14 of 17) -58788 NR_135490 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 2.812 1.312 4.846 0.835 0.590 0.199 2.544 0.102 0.128 4.172 2.217 0.852 3.950 0.067 0.155 0.858 1.798 0.314 0.403 9.449 7.923 11.133 4.531 0.649 0.820 3.017 3.529 2.040 nan 3.760 5.135 0.287 0.333 3.758 3.227 0.931 1.787 4.453 2.291 2.160 2.582 1.152 5.620 2.544 0.852 2.093 0.241 0.123 0.552 2504 chr9 35903509 35914640 + 0 NA promoter-TSS (NR_024283) promoter-TSS (NR_024283) -406 NR_024283 158376 Hs.302677 NR_024283 ENSG00000235387 LINC00961 SPAR long intergenic non-protein coding RNA 961 ncRNA 1.682 nan 1.326 0.261 0.297 0.185 0.679 1.940 0.304 0.350 0.200 0.175 2.577 0.204 0.086 0.258 0.209 0.949 1.552 0.884 0.877 0.825 0.258 0.290 0.269 5.124 6.328 1.018 0.895 1.730 1.616 0.360 0.430 0.114 0.122 0.916 2.540 3.206 2.149 2.254 0.241 0.009 0.043 0.679 0.175 0.123 0.728 0.053 0.765 138 chr1 68212490 68226797 + 0 NA intron (NM_018841, intron 2 of 3) intron (NM_018841, intron 2 of 3) 68783 NM_001924 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 1.644 1.217 nan 0.141 0.621 0.304 2.630 2.860 0.302 0.404 0.188 0.526 1.928 0.574 0.100 0.442 0.422 3.975 6.990 0.895 0.932 1.746 0.573 0.589 0.524 nan nan 1.028 nan 0.464 0.247 0.373 0.604 1.337 1.422 0.459 1.069 1.290 0.756 0.959 2.281 0.414 0.729 2.630 0.526 0.549 0.276 0.305 0.235 2199 chr6 158955385 158982692 + 0 NA intron (NM_020823, intron 1 of 16) intron (NM_020823, intron 1 of 16) 11570 NM_020823 57583 Hs.99145 NM_020823 ENSG00000146433 TMEM181 GPR178|KIAA1423 transmembrane protein 181 protein-coding nan 1.528 2.606 2.978 1.572 0.885 1.318 0.263 0.118 1.494 0.760 2.760 4.134 0.804 0.118 1.528 2.166 0.830 1.165 3.096 nan 4.925 1.411 1.049 1.006 1.075 1.467 2.098 2.633 2.371 2.367 0.745 1.451 3.465 3.639 1.453 nan 1.754 0.997 0.971 1.867 0.965 0.434 1.318 2.760 0.417 2.335 0.576 0.239 211 chr1 156659206 156680428 + 0 NA 3' UTR (NM_001199723, exon 5 of 5) 3' UTR (NM_001199723, exon 5 of 5) 5642 NM_001878 1382 Hs.405662 NM_001878 ENSG00000143320 CRABP2 CRABP-II|RBP6 cellular retinoic acid binding protein 2 protein-coding nan nan 1.275 0.280 1.386 0.631 2.256 1.737 0.288 0.283 0.194 0.304 3.745 0.281 0.127 0.901 1.432 0.536 0.950 1.440 nan 0.846 0.324 0.320 0.402 0.508 1.057 2.435 3.049 1.201 1.432 1.661 2.085 0.316 0.470 1.647 4.740 0.852 0.513 3.284 5.189 0.085 0.360 2.256 0.304 0.683 0.160 0.947 1.030 2070 chr6 15242374 15250271 + 0 NA 5' UTR (NM_004973, exon 1 of 18) 5' UTR (NM_004973, exon 1 of 18) 116 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 5.048 nan 4.090 4.027 2.411 1.420 3.348 1.812 0.468 1.277 0.623 5.170 2.878 2.923 0.190 2.200 4.052 10.610 10.197 5.449 4.439 4.338 1.493 5.918 5.479 2.817 3.606 3.704 5.126 8.520 11.446 2.014 4.739 3.752 3.158 3.632 6.076 1.566 0.947 1.179 4.463 0.955 2.571 3.348 5.170 1.454 1.662 2.104 2.644 508 chr11 100622154 100646535 + 0 NA intron (NM_152432, intron 1 of 23) AluSx|SINE|Alu -75658 NR_133571 100128386 Hs.635125 NR_133571 ENSG00000248027 LOC100128386 - uncharacterized LOC100128386 ncRNA 0.850 0.953 0.893 0.054 0.302 0.192 0.242 0.271 0.073 0.163 0.129 0.039 0.539 0.076 0.120 0.548 0.287 0.253 0.468 0.505 0.525 0.118 0.077 0.536 0.555 3.589 4.159 0.130 0.175 0.540 0.266 0.183 0.285 0.442 0.365 0.817 1.847 1.091 0.745 0.027 0.058 0.074 0.646 0.242 0.039 0.316 0.370 0.032 0.532 2185 chr6 143159475 143176938 + 0 NA intron (NM_006734, intron 1 of 9) intron (NM_006734, intron 1 of 9) 98132 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding nan 1.331 nan 0.246 0.211 0.101 0.762 1.036 0.055 0.089 0.091 0.322 1.513 0.709 0.149 1.100 1.306 1.746 6.159 0.560 0.704 0.232 0.162 0.409 0.429 0.532 0.981 0.419 0.406 0.783 0.456 0.681 1.253 0.105 0.097 0.355 0.952 0.192 0.167 0.647 0.113 0.005 0.095 0.762 0.322 0.123 0.222 0.505 0.128 2418 chr8 121455170 121459595 + 0 NA promoter-TSS (NM_022045) promoter-TSS (NM_022045) -256 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding nan nan nan 4.072 4.430 2.204 2.563 2.273 0.259 0.906 0.427 4.323 nan 1.708 0.097 4.609 4.810 6.134 7.887 9.768 10.021 8.367 4.904 20.748 23.121 4.334 4.995 3.976 5.450 7.898 7.522 5.489 9.956 4.921 4.706 6.156 6.238 2.728 1.859 2.517 2.233 0.910 1.026 2.563 4.323 0.525 2.082 2.128 1.766 528 chr11 126454686 126479681 + 0 NA intron (NM_032531, intron 1 of 16) intron (NM_032531, intron 1 of 16) -55490 NR_120532 101929427 Hs.600341 NR_120532 ENSG00000254607 LOC101929427 - uncharacterized LOC101929427 ncRNA 0.920 2.706 0.647 0.482 0.762 0.398 2.400 0.077 0.058 0.311 0.203 1.448 5.776 0.022 0.120 0.517 0.644 0.534 1.155 2.075 1.950 2.991 0.696 0.133 0.151 0.315 0.567 1.378 1.826 0.553 0.493 0.641 0.760 0.444 0.759 0.408 nan 1.366 0.856 4.864 1.305 0.107 0.315 2.400 1.448 0.136 0.069 0.157 0.361 960 chr16 30932830 30936797 + 0 NA promoter-TSS (NR_024348) promoter-TSS (NR_024348) -223 NR_024348 283932 Hs.711535 NM_175901 ENSG00000260852 FBXL19-AS1 NCRNA00095 FBXL19 antisense RNA 1 (head to head) ncRNA 4.621 2.050 3.525 4.364 5.211 2.500 3.583 1.345 0.040 1.348 0.712 5.107 17.448 4.442 0.069 6.841 6.718 4.955 5.629 6.501 6.150 9.148 6.615 15.282 16.466 3.626 4.408 9.686 13.277 7.110 7.192 3.830 5.435 4.584 5.613 5.360 5.367 2.786 1.609 3.370 2.891 0.602 1.809 3.583 5.107 2.015 3.404 2.510 1.934 1894 chr4 48179839 48201282 + 0 NA intron (NM_003215, intron 2 of 17) intron (NM_003215, intron 2 of 17) -54287 NM_003328 7294 Hs.479669 NM_003328 ENSG00000074966 TXK BTKL|PSCTK5|PTK4|RLK|TKL TXK tyrosine kinase protein-coding 0.631 nan nan 2.199 3.823 2.045 0.083 0.214 0.099 1.904 0.774 0.665 0.271 0.045 0.084 0.366 0.243 0.169 0.281 0.519 0.469 3.587 0.942 0.259 0.284 0.284 0.391 2.637 2.830 0.914 0.660 0.162 0.209 1.068 0.931 0.363 0.986 2.766 1.530 0.021 0.091 0.234 0.015 0.083 0.665 0.009 0.588 0.028 0.231 816 chr14 75695879 75710155 + 0 NA Intergenic AluSc5|SINE|Alu -42464 NM_005252 2353 Hs.25647 NM_005252 ENSG00000170345 FOS AP-1|C-FOS|p55 Fos proto-oncogene, AP-1 transcription factor subunit protein-coding 2.050 1.583 1.262 0.336 1.075 0.496 0.709 0.224 0.289 0.276 0.211 0.628 1.348 0.160 0.143 0.384 0.496 0.343 0.572 1.232 1.099 0.510 0.261 0.564 0.599 0.530 0.944 1.391 nan 1.215 1.032 0.316 0.321 0.518 0.454 0.567 1.141 2.670 nan 0.125 1.225 0.066 0.056 0.709 0.628 0.401 0.185 0.076 0.565 137 chr1 68176041 68191529 + 0 NA intron (NM_018841, intron 2 of 3) intron (NM_018841, intron 2 of 3) 32925 NM_001924 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 2.121 1.214 nan 0.750 0.817 0.476 2.675 1.586 0.280 1.494 0.712 0.903 1.926 0.084 0.119 0.581 0.609 5.425 3.244 1.113 1.068 5.126 1.986 0.282 0.252 nan nan 2.830 nan 0.465 0.353 0.251 0.498 1.817 1.719 0.925 3.200 2.944 1.568 1.204 1.508 0.604 0.286 2.675 0.903 0.214 1.063 0.186 0.655 736 chr13 107151196 107189209 + 0 NA intron (NM_004093, intron 1 of 4) intron (NM_004093, intron 1 of 4) 17186 NM_004093 1948 Hs.149239 NM_004093 ENSG00000125266 EFNB2 EPLG5|HTKL|Htk-L|LERK5 ephrin B2 protein-coding 1.196 0.946 0.806 0.292 0.677 0.380 1.004 0.101 0.064 0.143 0.121 0.576 1.381 0.057 0.093 1.972 1.629 2.810 4.315 1.450 1.151 0.369 0.170 3.366 3.397 0.929 nan 0.971 1.035 0.586 0.558 0.644 1.799 1.295 0.871 1.345 nan 0.251 0.215 0.066 0.355 0.177 0.432 1.004 0.576 0.175 0.250 0.551 0.475 761 chr14 24006113 24027274 + 0 NA intron (NM_033400, intron 1 of 9) intron (NM_033400, intron 1 of 9) 4165 NM_033400 85446 Hs.508937 NM_033400 ENSG00000136367 ZFHX2 ZFH-5|ZNF409 zinc finger homeobox 2 protein-coding nan 1.391 1.405 2.212 2.178 1.230 1.501 0.718 0.266 0.884 0.432 2.233 2.977 1.159 0.137 1.707 2.251 1.363 1.635 3.731 3.674 3.823 1.108 2.289 2.393 2.175 3.169 2.442 nan 2.869 2.635 1.759 2.640 2.071 2.120 0.843 2.236 2.980 1.411 1.093 1.848 0.453 0.906 1.501 2.233 0.715 2.890 1.617 0.538 759 chr14 23820866 23836952 + 0 NA exon (NM_005864, exon 4 of 6) exon (NM_005864, exon 4 of 6) 5933 NM_001277174 10278 Hs.24587 NM_005864 ENSG00000100842 EFS CAS3|CASS3|EFS1|EFS2|HEFS|SIN embryonal Fyn-associated substrate protein-coding nan 3.534 4.334 0.270 1.430 0.729 2.390 0.137 0.120 0.043 0.148 0.059 0.748 0.282 0.092 0.158 0.199 2.952 3.914 4.202 3.680 0.579 0.162 0.216 0.251 1.994 2.714 0.174 nan 4.438 4.629 0.573 0.701 0.162 0.188 6.117 8.270 0.445 0.398 4.134 0.049 0.030 3.041 2.390 0.059 0.470 0.061 0.215 5.647 2128 chr6 42407714 42428494 + 0 NA intron (NM_033502, intron 2 of 17) intron (NM_033502, intron 2 of 17) 1685 NM_033502 55809 Hs.485392 NM_018415 ENSG00000124496 TRERF1 BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5 transcriptional regulating factor 1 protein-coding 2.440 1.480 1.541 1.318 1.461 0.719 1.652 0.842 0.209 0.579 0.414 2.799 2.270 1.286 0.123 2.698 3.477 0.858 0.978 2.563 2.359 4.107 1.277 1.550 1.740 1.162 1.607 2.780 nan 2.145 2.429 0.936 2.619 2.021 1.442 1.299 2.032 1.164 0.763 1.091 1.781 0.790 0.763 1.652 2.799 0.398 0.618 1.634 0.969 2407 chr8 106662888 106681684 + 0 NA intron (NM_012082, intron 5 of 7) intron (NM_012082, intron 5 of 7) 341139 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 0.924 nan nan 0.149 0.232 0.103 0.075 0.154 0.099 0.033 0.070 0.038 0.466 0.109 0.074 0.332 0.398 0.446 0.350 0.345 0.438 nan 0.080 0.456 0.432 3.121 nan 0.519 nan nan 0.306 0.211 0.303 0.068 0.072 0.352 nan 0.498 0.429 0.021 0.056 0.024 0.021 0.075 0.038 0.026 0.011 0.042 0.138 2105 chr6 31761112 31765596 + 0 NA 5' UTR (NM_006295, exon 1 of 30).5 5' UTR (NM_006295, exon 1 of 30).5 358 NM_006295 7407 Hs.520026 NM_006295 ENSG00000204394 VARS G7A|VARS1|VARS2 valyl-tRNA synthetase protein-coding nan 2.411 nan 3.956 3.627 2.142 10.969 3.497 0.600 2.620 1.049 7.747 4.226 5.462 0.235 8.079 6.762 5.083 nan nan 7.586 6.937 4.096 15.023 15.562 4.065 6.098 10.203 12.825 7.663 7.125 4.505 7.255 6.907 7.560 5.759 7.542 4.515 2.141 2.050 3.895 1.606 1.910 10.969 7.747 2.759 3.152 1.104 3.263 2488 chr9 14514151 14548023 + 0 NA Intergenic Intergenic -132105 NM_001190738 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding nan nan 1.121 0.362 0.373 0.215 0.536 0.095 0.085 2.754 1.881 0.184 1.221 0.048 0.067 0.237 0.174 0.224 0.316 0.582 0.797 10.001 3.264 0.111 0.107 46.103 44.762 0.258 0.288 0.478 0.305 0.917 2.124 0.801 0.576 1.080 3.090 1.675 1.220 1.694 1.835 0.096 0.052 0.536 0.184 0.132 1.054 1.434 1.737 309 chr1 232145608 232152620 + 0 NA intron (NM_001164537, intron 12 of 13) intron (NM_001164537, intron 12 of 13) 87534 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 1.237 2.014 1.849 1.317 1.002 0.646 0.725 0.182 0.088 1.653 0.539 0.409 1.354 0.062 0.111 0.314 0.323 1.142 1.192 1.432 1.187 10.065 2.429 0.306 0.329 0.596 0.847 nan 1.557 0.466 0.228 0.196 0.144 1.235 1.329 0.488 1.065 nan 1.504 1.732 0.482 0.327 0.225 0.725 0.409 0.097 1.951 0.056 0.265 2057 chr6 5554529 5570431 + 0 NA intron (NM_006567, intron 5 of 6) intron (NM_006567, intron 5 of 6) -104172 NR_125848 101927972 Hs.668417 NR_125846 ENSG00000269985 LOC101927972 - uncharacterized LOC101927972 ncRNA 1.380 0.979 1.277 0.160 0.234 0.151 0.124 0.324 0.131 0.068 0.083 0.368 0.102 0.099 0.133 0.328 0.300 0.682 0.714 0.354 0.374 0.268 0.079 0.334 0.279 0.551 0.741 0.257 0.222 1.062 0.826 0.128 0.198 0.097 0.119 2.179 6.356 0.664 0.470 0.038 0.055 0.042 0.060 0.124 0.368 0.048 0.134 0.050 1.351 1165 chr18 31315472 31345837 + 0 NA 3' UTR (NM_030632, exon 12 of 12) 3' UTR (NM_030632, exon 12 of 12) 172113 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 additional sex combs like 3, transcriptional regulator protein-coding nan 0.893 0.777 1.210 3.300 1.747 0.497 0.049 0.032 0.452 0.495 5.521 1.357 0.050 0.083 0.429 0.246 0.369 0.382 19.959 20.902 1.356 0.427 0.156 0.126 1.246 1.550 nan 3.410 0.848 0.670 0.081 0.141 1.028 1.919 0.377 0.774 9.689 5.047 1.568 3.170 0.253 0.174 0.497 5.521 0.305 0.197 0.030 0.134 1437 chr2 47413299 47455866 + 0 NA intron (NR_110208, intron 3 of 4) FRAM|SINE|Alu -30507 NM_001305625 805 Hs.468442 NM_001743 ENSG00000143933 CALM2 CAMII|LQT15|PHKD|PHKD2|caM calmodulin 2 protein-coding 1.536 nan 1.256 0.298 0.720 0.443 0.404 0.237 0.099 0.377 0.259 0.353 1.109 0.077 0.099 1.481 2.104 0.350 0.655 nan 0.556 1.296 0.355 0.555 0.643 0.930 1.307 1.133 1.235 1.782 1.560 0.507 0.920 0.260 0.356 1.548 nan nan 0.850 1.553 1.107 0.070 0.517 0.404 0.353 0.289 0.100 0.761 1.470 1622 chr20 48525978 48555984 + 0 NA intron (NR_134564, intron 2 of 2) MIR|SINE|MIR 8622 NR_134564 105372653 Hs.589895 NR_134564 LOC105372653 - uncharacterized LOC105372653 ncRNA nan nan 1.855 1.378 1.404 0.637 0.948 1.416 0.317 0.726 0.470 1.318 2.609 0.983 0.134 2.197 2.430 1.366 2.322 1.960 1.903 nan 2.045 2.268 2.407 1.355 1.877 2.013 3.357 nan 2.478 1.430 2.067 1.170 1.326 2.719 4.231 1.868 1.412 0.517 1.206 0.134 0.512 0.948 1.318 0.572 0.919 0.503 1.157 1759 chr3 24225586 24243373 + 0 NA intron (NM_001252634, intron 5 of 11) intron (NM_001252634, intron 5 of 11) 41664 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 0.775 0.766 0.796 0.030 0.143 0.063 0.151 1.898 0.127 0.097 0.061 0.189 0.185 0.030 0.090 0.162 0.133 0.269 0.422 0.339 0.523 0.709 0.199 0.132 0.127 0.369 0.515 0.191 0.209 nan 0.688 0.107 0.190 0.168 0.173 1.650 5.503 0.395 0.419 0.078 0.151 0.021 0.177 0.151 0.189 0.027 0.029 0.039 1.163 2233 chr7 14256989 14296127 + 0 NA intron (NM_145695, intron 22 of 23) intron (NM_145695, intron 22 of 23) -245508 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding nan 1.038 nan 0.142 0.524 0.274 0.212 0.171 0.095 0.245 0.217 0.337 0.443 0.053 0.154 nan 0.300 6.138 5.955 0.485 0.664 0.654 0.309 0.339 0.373 0.776 1.001 0.390 0.413 0.433 0.159 0.103 0.165 0.258 0.399 0.224 0.299 0.478 0.402 0.052 0.096 0.061 0.087 0.212 0.337 0.017 0.073 0.023 0.038 1307 chr19 39320958 39325603 + 0 NA promoter-TSS (NM_001398) promoter-TSS (NM_001398) -783 NM_001398 1891 Hs.196176 NM_001398 ENSG00000104823 ECH1 HPXEL enoyl-CoA hydratase 1 protein-coding 2.928 2.751 2.500 4.974 2.615 1.398 1.651 1.196 0.345 1.014 0.676 2.320 15.540 2.520 0.233 2.409 3.650 1.666 3.142 3.032 2.537 4.974 3.151 6.666 7.221 3.794 4.965 4.806 8.769 nan 2.920 2.371 4.452 2.126 2.450 3.427 5.363 3.117 1.882 1.760 2.391 0.474 1.403 1.651 2.320 0.740 3.740 1.851 1.405 955 chr16 30568139 30587111 + 0 NA Intergenic Intergenic 6103 NM_001024683 146542 Hs.301463 NM_145271 ENSG00000229809 ZNF688 - zinc finger protein 688 protein-coding 2.971 1.998 1.963 4.239 2.728 1.251 2.101 0.662 0.268 0.559 0.413 2.611 6.578 1.122 0.109 2.552 2.487 1.423 2.311 3.120 2.929 4.771 1.909 4.246 4.457 1.889 2.514 4.906 6.792 3.794 3.659 1.882 2.493 2.849 2.923 2.279 3.476 1.771 1.077 1.848 1.607 0.657 1.192 2.101 2.611 1.099 1.319 0.712 1.012 2163 chr6 109264001 109272138 + 0 NA intron (NM_032131, intron 12 of 17) Tigger15a|DNA|TcMar-Tigger -22763 NR_104137 101929716 NR_104137 ARMC2-AS1 - ARMC2 antisense RNA 1 ncRNA 3.419 nan nan 0.166 0.269 0.137 0.218 0.111 0.079 0.269 0.131 0.599 0.469 0.040 0.103 0.524 0.468 0.413 1.615 0.357 nan 1.232 0.632 0.248 0.308 5.629 5.784 2.194 3.855 nan 0.511 1.045 1.801 5.728 6.314 0.517 0.851 0.446 0.467 0.469 0.469 2.000 0.080 0.218 0.599 0.314 4.078 3.721 0.124 267 chr1 203005425 203024700 + 0 NA exon (NM_001304332, exon 8 of 29) exon (NM_001304332, exon 8 of 29) 19413 NM_001304332 8497 Hs.153648 NM_015053 ENSG00000143847 PPFIA4 - PTPRF interacting protein alpha 4 protein-coding 1.367 0.921 1.264 0.133 0.464 0.249 0.475 0.153 0.144 0.237 0.146 0.422 0.827 0.090 0.085 0.646 0.596 0.449 0.720 3.301 3.554 1.148 0.311 nan nan 0.627 1.233 1.383 1.603 0.619 0.356 0.241 0.261 0.289 0.265 0.797 1.402 1.335 0.831 0.575 0.318 0.040 0.201 0.475 0.422 0.227 0.727 0.026 0.346 2011 chr5 121645504 121668890 + 0 NA intron (NM_001308107, intron 1 of 8) L2c|LINE|L2 9433 NM_001308100 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding nan 1.196 1.117 1.489 2.419 1.171 0.176 0.087 0.109 0.961 0.649 2.706 5.627 0.070 0.123 0.233 0.342 0.370 nan 6.720 7.456 0.947 0.217 0.549 0.568 2.380 3.092 2.616 2.415 0.423 0.213 0.112 0.275 3.004 2.625 0.168 0.217 1.687 0.780 1.189 3.585 0.848 0.264 0.176 2.706 0.012 1.793 0.036 0.032 1261 chr19 11028093 11054356 + 0 NA TTS (NM_138358) TTS (NM_138358) -1536 NM_024029 78992 Hs.164026 NM_024029 ENSG00000130733 YIPF2 FinGER2 Yip1 domain family member 2 protein-coding 1.447 1.894 1.813 1.242 0.941 0.533 0.585 0.305 0.153 0.586 0.372 1.385 2.282 0.351 0.078 0.973 1.136 1.370 1.891 1.721 1.804 4.096 1.853 1.454 1.593 0.682 1.066 4.490 4.854 1.358 0.973 0.487 0.731 0.943 1.296 0.680 1.379 1.523 0.824 0.974 0.728 0.264 0.328 0.585 1.385 0.275 0.700 0.218 0.227 1891 chr4 41744545 41802556 + 0 NA Intergenic Intergenic -22563 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B NBLST2|NBPhox|PMX2B paired like homeobox 2b protein-coding 1.372 nan nan 0.120 0.216 0.097 0.071 0.084 0.058 0.101 0.147 0.050 0.237 0.040 0.060 0.306 0.163 0.161 0.234 0.278 0.233 0.096 0.085 0.118 0.119 0.158 0.259 0.223 0.265 1.712 1.458 0.122 0.189 0.042 0.046 2.518 5.925 0.675 0.762 0.025 0.283 0.005 2.678 0.071 0.050 0.121 0.049 0.026 2.793 1041 chr17 27884344 27896645 + 0 NA intron (NM_198147, intron 1 of 1) AluJb|SINE|Alu 3548 NM_198147 116236 Hs.106510 NM_198147 ENSG00000168792 ABHD15 - abhydrolase domain containing 15 protein-coding nan nan nan 0.509 1.995 1.234 0.672 0.514 0.211 0.294 0.178 1.243 1.840 2.593 0.194 0.837 1.440 1.214 1.652 1.385 0.933 2.272 0.786 1.586 1.746 1.190 1.912 1.716 2.076 6.046 6.034 1.163 2.497 0.970 0.782 2.257 nan 0.576 0.567 0.937 0.252 0.318 0.716 0.672 1.243 0.512 0.840 0.845 4.141 1652 chr20 61869953 61878797 + 0 NA intron (NM_152864, intron 5 of 6) intron (NM_152864, intron 5 of 6) 4244 NR_036163 100423014 NR_036163 ENSG00000266463 MIR3196 mir-3196 microRNA 3196 ncRNA 0.704 1.387 1.069 1.231 0.410 0.150 0.141 0.113 0.054 0.075 0.049 0.202 1.030 0.098 0.073 0.674 nan 0.108 0.108 1.003 0.755 1.271 0.283 0.533 0.710 0.134 0.279 0.388 0.248 0.655 0.428 0.358 0.493 0.120 0.167 0.168 0.208 1.196 0.733 7.413 0.287 0.043 0.045 0.141 0.202 0.055 0.497 0.044 0.014 1851 chr3 177269395 177293103 + 0 NA intron (NR_047568, intron 2 of 3) intron (NR_047568, intron 2 of 3) 121540 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 1.423 1.423 1.331 0.600 1.256 0.704 0.476 0.605 0.224 0.866 0.500 0.618 0.683 0.078 0.129 0.302 0.341 0.551 1.216 0.650 0.927 6.384 2.722 0.231 0.267 0.680 0.943 0.931 0.671 0.734 0.306 0.150 0.231 1.032 1.541 0.642 1.779 2.269 1.220 0.215 0.116 0.182 0.182 0.476 0.618 0.053 0.203 0.054 0.565 487 chr11 73022688 73042339 + 0 NA intron (NM_014786, intron 1 of 20) MIRb|SINE|MIR 12850 NM_014786 9828 Hs.533719 NM_014786 ENSG00000110237 ARHGEF17 P164RHOGEF|RHOGEF17|TEM4|p164-RhoGEF Rho guanine nucleotide exchange factor 17 protein-coding nan 0.625 0.764 0.077 0.382 0.229 0.192 2.391 0.493 0.081 0.079 0.285 0.751 0.414 0.114 0.972 1.520 0.404 0.486 0.996 1.018 0.575 0.252 1.235 1.155 3.183 3.518 0.988 1.458 1.825 1.473 0.601 0.689 0.325 0.313 0.968 2.513 1.002 0.703 0.311 0.162 0.024 0.230 0.192 0.285 1.339 0.212 0.081 0.703 395 chr11 869386 898921 + 0 NA exon (NM_023947, exon 9 of 13) exon (NM_023947, exon 9 of 13) 26721 NM_023947 66005 Hs.144468 NM_023947 ENSG00000177830 CHID1 GL008|SI-CLP|SICLP chitinase domain containing 1 protein-coding 0.761 0.627 4.178 0.077 0.245 0.141 0.229 0.109 0.055 0.117 0.110 0.224 0.450 0.066 0.047 0.660 1.131 0.310 0.387 0.780 0.825 0.392 0.187 0.511 0.492 0.491 0.871 0.230 0.369 1.803 2.092 0.405 0.397 0.198 0.249 0.429 0.660 0.614 0.365 0.284 0.228 0.048 0.083 0.229 0.224 0.187 0.038 0.064 0.253 488 chr11 73086653 73104911 + 0 NA intron (NM_032871, intron 1 of 10) intron (NM_032871, intron 1 of 10) 8069 NM_032871 84957 Hs.533720 NM_032871 ENSG00000054967 RELT TNFRSF19L|TRLT RELT tumor necrosis factor receptor protein-coding nan 1.129 1.656 0.265 1.023 0.473 0.650 0.425 0.035 0.293 0.178 0.584 1.823 0.689 0.094 2.605 4.614 1.500 2.054 1.718 1.784 1.205 0.462 3.937 4.052 1.591 2.239 1.733 2.712 0.888 0.940 1.686 2.569 0.726 0.738 0.697 1.073 0.760 0.638 1.478 0.642 0.146 0.388 0.650 0.584 0.243 0.501 0.769 0.183 167 chr1 145381066 145400181 + 0 NA intron (NM_001039703, intron 68 of 85) AluSx4|SINE|Alu -8219 NR_125968 101928979 Hs.735893 NR_125967 ENSG00000233396 LINC01719 - long intergenic non-protein coding RNA 1719 ncRNA 2.882 nan 2.997 1.334 1.333 0.547 1.099 1.738 0.429 1.473 0.877 1.237 10.956 2.432 0.234 2.110 3.149 1.743 2.730 2.157 1.844 4.053 1.413 3.715 3.753 1.919 2.423 2.549 3.625 2.231 2.203 4.399 4.796 2.631 2.383 2.923 4.754 1.569 0.756 1.267 3.448 0.334 0.725 1.099 1.237 0.418 1.481 2.000 1.169 568 chr12 11800587 11808094 + 0 NA intron (NM_001987, intron 1 of 7) intron (NM_001987, intron 1 of 7) 1552 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 4.044 3.244 5.084 12.486 5.219 2.778 2.607 1.565 0.136 4.473 2.268 8.557 13.722 3.685 0.188 4.397 5.555 7.358 10.056 nan 10.919 10.709 4.964 13.143 13.270 2.757 3.694 11.106 19.496 4.892 5.320 3.800 6.381 2.521 2.072 2.862 2.588 2.739 1.653 4.819 4.074 0.517 0.869 2.607 8.557 0.311 2.025 3.275 1.225 2131 chr6 43592496 43608790 + 0 NA intron (NM_001003690, intron 1 of 3) AluSq2|SINE|Alu -2934 NM_014628 9587 Hs.122346 NM_014628 ENSG00000124688 MAD2L1BP CMT2 MAD2L1 binding protein protein-coding 3.638 3.056 2.093 4.452 2.628 1.368 3.260 3.300 0.553 1.968 0.795 3.969 6.900 2.456 0.146 2.610 3.012 2.440 3.631 3.589 3.297 8.229 4.789 4.140 4.192 2.233 2.629 6.191 nan 3.743 4.081 1.304 2.150 3.622 5.645 2.645 5.918 2.548 1.323 2.524 2.646 0.718 1.624 3.260 3.969 0.583 1.647 1.284 2.018 2343 chr8 23620057 23642924 + 0 NA Intergenic AluJb|SINE|Alu -67379 NM_001136271 137814 Hs.532654 NM_001136271 ENSG00000180053 NKX2-6 CSX2|CTHM|NKX2F|NKX4-2 NK2 homeobox 6 protein-coding nan 0.884 nan 0.046 0.172 0.098 0.280 0.056 0.085 0.068 0.075 0.047 0.085 0.067 0.106 0.357 0.246 0.166 0.248 nan 0.473 nan 0.098 0.053 0.056 0.099 0.159 0.266 0.258 4.257 3.932 0.163 0.166 0.098 0.147 1.287 4.642 nan nan 0.012 0.062 0.007 0.055 0.280 0.047 0.004 2.050 0.038 1.979 2094 chr6 26532851 26540296 + 0 NA Intergenic Intergenic -1999 NM_006353 10473 Hs.236774 NM_006353 ENSG00000182952 HMGN4 HMG17L3|NHC high mobility group nucleosomal binding domain 4 protein-coding 5.262 2.644 nan 3.746 3.255 1.487 3.246 3.004 0.611 1.412 0.994 3.584 nan 5.708 0.218 3.776 5.971 2.914 nan 5.904 4.876 7.308 2.026 8.087 8.268 4.610 5.689 6.051 7.072 7.445 7.633 2.160 3.620 4.290 4.272 7.157 10.010 2.448 1.234 1.045 2.775 0.643 2.206 3.246 3.584 0.673 2.195 1.836 3.838 1366 chr19 50304673 50333237 + 0 NA Intergenic AluSx|SINE|Alu -2388 NM_001171937 80199 Hs.288800 NM_025129 ENSG00000010361 FUZ FY|NTD fuzzy planar cell polarity protein protein-coding 2.508 1.445 1.598 3.015 4.418 2.529 1.239 0.640 0.202 0.902 0.517 4.073 3.657 1.770 0.149 1.862 3.054 1.103 1.999 6.867 6.595 5.657 3.022 4.933 5.205 2.225 2.897 5.547 8.041 2.982 2.924 1.454 1.947 1.966 1.596 4.480 5.610 3.289 1.825 2.818 6.181 0.326 1.521 1.239 4.073 0.574 1.009 1.043 1.989 890 chr15 75742393 75749092 + 0 NA intron (NM_001145357, intron 1 of 20) CpG-8103 -1655 NM_001145358 25942 Hs.513039 NM_015477 ENSG00000169375 SIN3A WITKOS SIN3 transcription regulator family member A protein-coding 5.151 4.085 4.654 4.839 5.853 2.785 3.564 4.088 0.429 2.741 0.973 5.255 19.330 5.824 0.107 4.377 4.938 6.607 8.209 5.590 4.235 6.109 2.209 8.640 8.537 3.278 4.476 6.041 10.487 7.222 8.684 1.572 3.476 3.444 3.069 4.832 6.325 1.870 1.068 2.646 3.977 0.910 2.835 3.564 5.255 2.150 3.771 2.498 1.854 474 chr11 65543460 65561270 + 0 NA Intergenic Intergenic 2119 NR_031600 100302196 NR_031600 ENSG00000071894 MIR1234 MIRN1234|hsa-mir-1234 microRNA 1234 ncRNA nan 1.423 1.160 1.123 0.584 0.315 0.575 0.240 0.100 0.294 0.207 1.234 1.974 0.688 0.110 1.321 1.751 1.592 2.415 1.503 1.389 1.370 0.426 0.996 1.101 0.552 0.952 2.558 2.559 0.780 0.577 2.277 4.173 0.550 0.554 0.354 0.568 0.977 0.784 1.823 0.481 0.085 0.103 0.575 1.234 0.663 1.306 2.525 0.091 2480 chr9 13987860 13996085 + 0 NA Intergenic Intergenic 64002 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA nan nan 1.831 0.715 1.609 0.877 1.904 0.155 0.039 0.325 0.240 1.242 5.720 0.053 0.080 0.151 0.170 0.260 0.325 4.960 4.547 2.719 0.662 0.119 0.102 8.882 11.243 1.296 1.437 0.389 0.160 0.217 0.258 2.750 2.175 0.180 0.291 1.214 1.117 6.377 0.350 0.835 0.120 1.904 1.242 0.140 0.061 0.048 0.030 978 chr16 56963517 56975246 + 0 NA exon (NM_001010989, exon 3 of 8) exon (NM_001010989, exon 3 of 8) 3379 NM_001272103 9709 Hs.146393 NM_014685 ENSG00000051108 HERPUD1 HERP|Mif1|SUP homocysteine inducible ER protein with ubiquitin like domain 1 protein-coding nan nan nan 6.489 5.651 3.003 3.222 1.673 0.137 1.447 0.512 4.253 4.415 1.401 0.119 2.817 3.701 1.228 1.705 8.439 6.114 4.591 1.994 6.627 6.586 1.228 nan nan nan nan 4.208 2.250 3.290 1.788 1.982 2.363 nan nan 1.525 4.062 4.692 0.218 2.721 3.222 4.253 0.538 1.626 0.886 0.956 1114 chr17 73147342 73151597 + 0 NA promoter-TSS (NM_001288610) promoter-TSS (NM_001288610) -81 NM_001288610 51155 Hs.532803 NM_016185 ENSG00000189159 HN1 ARM2|HN1A hematological and neurological expressed 1 protein-coding 8.787 3.875 4.355 5.053 6.051 3.450 4.139 2.259 0.457 5.508 2.283 5.205 14.247 4.340 0.250 8.810 10.717 4.793 6.171 10.522 7.302 8.788 2.448 9.554 10.455 nan 9.050 6.258 12.527 14.936 20.523 3.816 8.047 10.013 7.839 7.818 7.445 nan 3.315 3.950 4.470 1.538 3.369 4.139 5.205 1.364 4.753 2.308 2.016 691 chr12 133483561 133486919 + 0 NA Intergenic CpG 20812 NR_110919 101928530 Hs.560003 NR_110919 ENSG00000236617 LOC101928530 - uncharacterized LOC101928530 ncRNA 1.365 2.269 0.586 2.230 1.025 0.575 4.245 0.312 0.122 0.371 0.394 1.782 6.120 4.065 0.252 0.573 1.087 0.048 0.133 3.745 3.274 3.762 1.270 1.089 0.939 0.083 0.241 nan 3.760 0.953 1.026 0.803 1.367 0.822 0.542 1.071 1.306 0.332 0.183 2.768 3.014 0.054 14.615 4.245 1.782 1.012 0.473 0.256 1563 chr20 326487 330020 + 0 NA promoter-TSS (NM_001323685) promoter-TSS (NM_001323685) -296 NM_001323685 80023 Hs.416024 NM_024958 ENSG00000125841 NRSN2 C20orf98|dJ1103G7.6 neurensin 2 protein-coding 6.867 7.733 4.262 5.840 5.974 3.174 5.913 2.982 0.320 2.195 1.308 4.968 15.533 4.307 0.131 7.436 10.978 5.220 6.338 9.093 7.933 9.342 4.302 8.111 7.828 4.501 5.916 9.474 14.286 12.415 13.841 4.875 6.703 5.915 5.377 5.246 9.171 2.156 1.001 3.400 11.552 1.731 2.852 5.913 4.968 4.406 9.543 3.449 2.861 2517 chr9 75721301 75800241 + 0 NA Intergenic Intergenic -5876 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding nan nan nan 0.088 0.633 0.287 0.750 0.767 0.114 0.329 0.190 0.045 0.238 0.909 0.094 1.112 0.761 9.631 nan 0.328 nan 0.107 0.059 2.331 2.296 0.217 0.343 0.435 0.524 0.219 0.079 0.391 0.533 0.964 1.148 0.187 0.399 1.325 0.881 0.027 0.058 0.118 0.024 0.750 0.045 0.004 0.087 0.238 0.047 1154 chr18 19584138 19589021 + 0 NA Intergenic Intergenic 162350 NR_102763 100128893 Hs.514745 NR_102763 ENSG00000266010 GATA6-AS1 BM742401|locus5689 GATA6 antisense RNA 1 (head to head) ncRNA 0.709 0.614 0.802 0.198 0.227 0.033 0.373 0.092 0.163 0.121 0.078 0.073 0.354 0.134 0.164 0.402 0.231 0.267 0.547 0.302 0.513 14.363 4.816 0.162 0.161 0.141 0.244 0.055 0.157 0.371 0.161 0.141 0.186 0.124 0.164 0.138 0.270 0.255 0.422 0.034 0.050 0.059 0.030 0.373 0.073 0.031 0.041 0.076 123 chr1 54698002 54831103 + 0 NA intron (NM_001009955, intron 4 of 16) intron (NM_001009955, intron 4 of 16) 62436 NR_103541 619518 Hs.591438 NM_001034847 ENSG00000198711 SSBP3-AS1 C1orf191|MST128|MSTP128 SSBP3 antisense RNA 1 ncRNA 2.169 1.044 3.510 0.429 1.217 0.634 0.881 0.316 0.104 0.419 0.237 0.467 0.690 0.162 0.103 0.637 0.960 0.316 0.504 1.483 1.566 1.099 0.345 0.463 0.480 1.453 2.112 1.374 1.649 3.238 3.008 0.555 0.801 0.501 0.580 2.116 nan 1.560 0.965 0.383 0.221 0.151 0.409 0.881 0.467 0.704 0.299 0.265 2.882 1026 chr17 17724080 17754638 + 0 NA intron (NM_001005291, intron 1 of 19) L2b|LINE|L2 966 NM_004176 6720 Hs.592123 NM_004176 ENSG00000072310 SREBF1 SREBP-1c|SREBP1|SREBP1a|bHLHd1 sterol regulatory element binding transcription factor 1 protein-coding 3.940 1.996 3.028 2.005 5.407 2.728 2.133 1.159 0.216 0.958 0.501 1.299 2.676 1.637 0.054 1.805 2.994 1.601 nan 1.726 1.627 2.506 1.337 2.894 3.156 1.293 1.771 4.563 5.301 nan 2.149 1.257 2.454 1.664 0.936 2.570 5.384 0.847 0.427 1.806 3.151 0.524 0.707 2.133 1.299 0.920 3.526 1.682 2.362 40 chr1 14226471 14233030 + 0 NA Intergenic Intergenic 153874 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 0.683 0.971 nan 0.290 0.470 0.198 0.107 0.045 0.049 0.048 0.038 0.075 0.802 0.036 0.068 0.459 0.422 7.064 2.350 0.513 0.504 1.212 0.417 0.473 nan 0.163 nan 1.081 1.004 nan 0.173 0.459 0.744 0.054 0.154 0.201 0.228 0.666 0.497 0.874 0.122 0.014 0.060 0.107 0.075 0.030 0.200 0.347 0.019 2464 chr9 1047110 1062478 + 0 NA intron (NM_181872, intron 3 of 3) intron (NM_181872, intron 3 of 3) 4174 NM_181872 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 0.348 2.104 1.501 0.573 0.202 0.115 1.082 0.044 0.063 0.051 0.075 0.346 1.053 0.057 0.085 0.217 0.191 0.807 0.667 1.445 1.264 0.126 0.069 11.600 11.284 0.839 1.330 0.915 1.121 0.913 0.891 0.228 0.461 0.071 0.071 0.045 nan 0.581 0.658 0.011 0.458 0.018 0.016 1.082 0.346 0.042 0.041 0.155 0.024 1175 chr18 42001441 42007384 + 0 NA intron (NR_110792, intron 2 of 4) intron (NR_110792, intron 2 of 4) 107250 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA nan 1.004 0.714 0.759 2.700 1.185 0.437 0.098 0.816 0.311 0.262 1.867 0.037 0.063 0.253 0.262 0.203 0.386 1.416 1.918 0.247 0.211 0.049 0.058 0.135 0.220 1.625 2.185 0.339 0.149 0.094 0.043 1.732 0.514 0.106 nan 5.991 2.998 0.160 0.015 0.386 0.015 0.437 0.262 0.068 0.033 0.085 2564 chr9 135867777 135872754 + 0 NA Intergenic Intergenic 16167 NM_001135031 8328 Hs.553160 NM_004188 ENSG00000165702 GFI1B BDPLT17|ZNF163B growth factor independent 1B transcriptional repressor protein-coding nan 0.393 0.589 0.223 0.284 0.207 0.093 0.046 0.096 0.127 0.067 0.120 0.637 0.044 0.157 2.364 3.982 11.883 7.549 0.566 0.579 nan 0.179 3.422 3.442 0.070 0.145 0.780 0.737 0.455 0.242 2.994 5.918 0.119 0.190 0.057 0.142 0.313 0.394 0.346 0.054 0.051 0.093 0.120 0.081 0.081 4.410 0.050 2574 chr9 139419704 139442081 + 0 NA intron (NM_017617, intron 2 of 33) intron (NM_017617, intron 2 of 33) 9346 NM_017617 4851 Hs.495473 NM_017617 ENSG00000148400 NOTCH1 AOS5|AOVD1|TAN1|hN1 notch 1 protein-coding nan 1.361 3.095 0.825 0.427 0.218 0.721 0.709 0.173 0.035 0.056 0.292 1.069 0.500 0.072 1.877 3.011 2.002 3.227 1.557 1.309 nan 0.190 1.492 1.654 0.193 0.346 0.558 0.697 2.278 2.094 1.313 2.481 0.347 0.360 0.457 0.647 0.420 0.314 1.351 0.417 0.047 1.044 0.721 0.292 0.718 0.164 0.800 0.182 1524 chr2 208115713 208131765 + 0 NA Intergenic Intergenic -4699 NR_110283 101927865 Hs.574609 NR_110283 LOC101927865 - uncharacterized LOC101927865 ncRNA 1.469 nan 2.449 0.301 2.163 1.026 0.543 0.788 0.160 0.166 0.132 0.399 4.045 0.195 0.074 2.176 2.645 0.579 0.885 0.261 0.306 0.535 0.198 1.497 1.606 6.217 6.493 0.460 0.464 1.186 1.441 0.698 1.108 3.311 4.107 1.264 3.756 0.369 0.284 1.988 1.025 1.296 0.149 0.543 0.399 0.503 0.360 0.819 0.854 284 chr1 211901536 211940180 + 0 NA 3' UTR (NM_001320808, exon 8 of 8) 3' UTR (NM_001320808, exon 8 of 8) -71886 NM_001204182 4751 Hs.153704 NM_002497 ENSG00000117650 NEK2 HsPK21|NEK2A|NLK1|PPP1R111|RP67 NIMA related kinase 2 protein-coding 1.534 2.210 1.369 1.715 0.709 0.371 0.375 0.449 0.158 0.467 0.263 0.341 nan 0.064 0.122 0.727 1.114 3.268 6.121 1.197 1.259 nan 0.257 0.489 0.554 0.752 nan 2.861 2.521 0.779 0.541 0.249 0.313 1.179 1.627 1.658 4.785 1.021 0.760 1.015 0.525 0.160 0.115 0.375 0.341 0.375 0.236 0.144 1.328 56 chr1 23865641 23904910 + 0 NA intron (NM_002167, intron 2 of 2) MIRc|SINE|MIR 1010 NM_002167 3399 Hs.76884 NM_002167 ENSG00000117318 ID3 HEIR-1|bHLHb25 inhibitor of DNA binding 3, HLH protein protein-coding 2.638 2.557 nan 2.635 1.752 0.980 1.930 2.107 0.311 1.507 0.666 2.107 8.220 3.760 0.179 1.586 1.398 6.445 10.902 4.596 3.710 3.565 1.063 3.940 3.838 3.688 4.816 1.160 1.687 2.804 2.533 1.348 2.126 2.361 2.720 2.583 3.233 2.601 1.582 5.280 1.974 0.609 2.128 1.930 2.107 1.063 1.520 1.024 0.934 1520 chr2 205188208 205238506 + 0 NA Intergenic L1ME1|LINE|L1 -197159 NM_205863 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 1.013 nan 1.105 0.130 0.287 0.108 0.219 0.162 0.084 0.119 0.109 0.299 0.370 0.017 0.069 0.506 0.304 0.657 0.587 0.339 0.394 0.393 0.108 13.152 13.439 0.415 0.725 0.709 0.580 0.876 0.762 0.175 0.258 0.363 0.282 0.457 0.827 0.474 0.356 0.106 0.066 0.110 0.248 0.219 0.299 0.187 0.036 0.043 0.212 780 chr14 37252542 37278936 + 0 NA intron (NM_030631, intron 3 of 9) L2c|LINE|L2 138966 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 1.376 0.869 0.937 1.241 1.492 0.832 0.213 0.167 0.085 0.434 0.351 0.635 6.923 0.054 0.114 0.220 0.163 0.176 0.266 2.622 2.828 2.384 0.823 0.271 0.275 0.349 0.488 2.454 2.816 0.576 0.233 0.448 0.445 4.916 4.286 0.150 0.194 0.696 0.606 5.052 1.975 1.651 0.081 0.213 0.635 0.110 0.220 0.506 0.089 1252 chr19 5577411 5598232 + 0 NA intron (NM_014649, intron 19 of 20) CpG-12677 -19776 NR_027064 257000 Hs.515575 NM_153375 ENSG00000223573 TINCR LINC00036|NCRNA00036|PLAC2|onco-lncRNA-16 tissue differentiation-inducing non-protein coding RNA ncRNA 0.663 0.949 1.638 2.346 1.983 1.062 1.354 0.072 0.085 0.241 0.214 2.347 0.911 0.083 0.071 0.643 0.630 0.504 0.479 0.853 0.922 1.478 0.410 0.579 0.565 0.509 0.824 9.590 nan 0.545 0.385 0.243 0.324 0.414 0.346 0.157 0.302 1.404 0.796 3.142 0.353 0.082 0.083 1.354 2.347 0.084 0.561 0.043 0.067 114 chr1 49677671 49682329 + 0 NA intron (NM_001323573, intron 4 of 12) intron (NM_001323573, intron 4 of 12) -43083 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA nan 0.860 nan 0.169 0.453 0.308 0.072 0.118 0.055 0.168 0.125 0.179 0.203 0.034 0.123 1.450 1.290 10.461 2.011 0.438 0.519 0.160 0.089 0.677 0.752 0.231 nan nan 0.368 0.388 0.063 0.832 nan 1.278 1.400 0.623 1.332 0.888 0.724 0.038 0.136 0.267 0.090 0.072 0.179 0.338 0.192 1813 chr3 134576815 134601284 + 0 NA intron (NM_004441, intron 1 of 15) intron (NM_004441, intron 1 of 15) 74950 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 1.066 nan nan 0.951 0.477 0.204 0.193 0.147 0.086 0.173 0.146 0.145 0.609 0.044 0.087 0.278 0.150 0.222 0.292 0.549 0.625 4.693 1.512 0.226 0.229 0.527 0.919 1.252 0.969 nan 0.394 0.149 0.277 0.367 0.434 0.175 0.278 0.248 0.328 0.186 0.174 0.043 0.055 0.193 0.145 0.205 0.050 0.044 0.076 1330 chr19 44097764 44102434 + 0 NA promoter-TSS (NM_024327) promoter-TSS (NM_024327) 188 NM_001007561 126298 Hs.6217 NM_001007561 ENSG00000167378 IRGQ FKSG27|IRGQ1 immunity related GTPase Q protein-coding 6.258 3.364 4.149 2.841 4.070 1.752 3.568 2.247 0.246 1.712 1.174 4.020 5.288 3.202 0.171 3.163 3.817 6.651 10.224 6.741 6.910 7.554 5.806 15.648 18.518 4.190 5.606 6.432 9.794 4.170 4.567 4.159 6.703 4.969 5.289 6.595 5.854 4.871 2.828 2.109 3.632 0.471 0.782 3.568 4.020 1.083 2.004 1.780 1.709 1603 chr20 32234454 32249701 + 0 NA Intergenic Intergenic -8015 NM_080825 128864 Hs.324104 NM_080825 ENSG00000149609 C20orf144 dJ63M2.6 chromosome 20 open reading frame 144 protein-coding 1.460 3.338 5.258 3.173 5.312 2.711 0.252 1.034 0.254 1.008 0.441 6.877 4.803 0.121 0.075 3.572 5.017 0.968 0.695 4.990 nan 3.560 0.921 2.266 2.452 1.128 1.777 8.340 7.799 2.135 1.919 1.650 2.224 0.760 0.968 0.658 nan 1.084 0.615 1.841 2.375 0.144 0.632 0.252 6.877 0.165 0.453 0.498 0.369 2390 chr8 93063521 93084477 + 0 NA intron (NM_001198633, intron 1 of 10) intron (NM_001198633, intron 1 of 10) 1192 NM_004349 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 translocation partner 1 protein-coding nan 0.955 3.387 0.330 0.364 0.153 0.898 1.699 0.122 0.150 0.099 0.846 0.695 0.018 0.092 0.309 0.156 0.218 nan 1.363 1.333 1.154 0.400 0.188 0.198 1.046 1.328 1.316 1.334 3.346 3.028 0.179 0.235 0.451 0.304 1.012 2.808 0.420 0.369 0.218 0.190 0.154 0.501 0.898 0.846 0.237 0.276 0.061 1.409 962 chr16 31190218 31193741 + 0 NA intron (NM_001170634, intron 1 of 14) CpG 548 NM_004960 2521 Hs.46894 NM_004960 ENSG00000089280 FUS ALS6|ETM4|FUS1|HNRNPP2|POMP75|TLS FUS RNA binding protein protein-coding 7.857 4.279 6.799 9.547 8.912 4.528 5.095 3.972 0.500 2.714 0.913 7.547 22.466 5.913 0.090 7.864 8.735 7.689 10.854 10.124 10.087 14.490 10.816 16.940 18.001 6.024 7.366 13.497 20.496 13.094 15.367 8.516 12.865 10.791 11.431 8.438 7.537 5.287 2.467 6.027 4.559 1.875 4.214 5.095 7.547 1.765 3.942 3.139 2.419 436 chr11 45101559 45114290 + 0 NA Intergenic Intergenic -7640 NR_046338 56981 Hs.178715 NM_020229 ENSG00000019485 PRDM11 PFM8 PR/SET domain 11 protein-coding nan 1.508 0.983 0.451 1.703 0.882 2.148 1.062 0.202 0.665 0.199 0.236 1.008 0.076 0.106 1.540 2.977 0.190 0.320 0.784 0.666 9.714 2.914 0.143 0.168 1.191 1.577 0.734 0.541 2.658 2.153 0.381 0.483 0.472 0.476 0.362 nan 1.983 1.025 0.168 1.757 0.127 0.013 2.148 0.236 1.660 0.230 0.093 0.050 867 chr15 57486126 57574386 + 0 NA intron (NM_001306220, intron 4 of 11) intron (NM_001306220, intron 4 of 11) 18601 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20 transcription factor 12 protein-coding 0.940 1.049 1.311 1.369 3.325 1.663 0.615 0.743 0.125 1.070 0.778 3.334 5.061 0.066 0.090 0.581 0.597 0.670 0.774 2.308 2.848 2.116 0.789 0.803 0.779 0.787 1.142 4.745 5.410 2.392 1.777 0.804 1.522 2.008 2.534 0.831 1.602 1.535 0.705 0.604 1.013 0.471 0.386 0.615 3.334 0.103 0.555 1.497 0.321 1441 chr2 60075533 60080515 + 0 NA Intergenic LTR13|LTR|ERVK 532147 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000223929 MIR4432HG - MIR4432 host gene ncRNA 0.559 0.469 nan 0.162 0.227 0.155 0.180 0.000 0.066 0.137 0.133 0.048 0.188 0.084 0.079 1.063 1.611 9.579 2.605 0.330 0.420 nan 0.096 0.171 0.230 0.192 0.316 0.305 0.232 0.303 0.177 0.284 0.252 0.109 0.040 0.172 0.280 0.693 0.539 0.043 0.144 0.018 0.058 0.180 0.048 0.057 0.040 0.021 0.026 2281 chr7 76573778 76595412 + 0 NA Intergenic Intergenic -25544 NR_023383 441263 Hs.675888 NR_023383 ENSG00000265479 DTX2P1-UPK3BP1-PMS2P11 PMS2L11 DTX2P1-UPK3BP1-PMS2P11 readthrough, transcribed pseudogene pseudo nan 0.880 1.023 0.961 0.550 0.208 0.464 0.560 0.305 0.654 0.406 0.607 0.936 0.431 0.136 0.682 0.834 0.500 nan 0.997 1.002 6.101 1.588 0.351 0.305 0.274 nan 0.495 nan 0.651 0.417 0.320 0.466 1.908 2.830 0.445 0.986 3.384 1.748 0.166 0.324 1.002 0.563 0.464 0.607 0.367 0.179 0.077 0.154 628 chr12 57908046 57918637 + 0 NA promoter-TSS (NR_030346) promoter-TSS (NR_030346) -299 NR_030346 693201 NR_030346 ENSG00000208028 MIR616 MIRN616|hsa-mir-616 microRNA 616 ncRNA nan 3.344 2.442 3.460 4.864 2.771 3.315 3.945 0.606 2.283 1.140 3.066 10.236 3.794 0.157 nan 6.239 4.140 6.933 5.822 nan 5.208 3.628 11.692 11.745 2.592 nan 8.235 nan 4.602 4.958 4.170 6.152 4.415 6.303 4.249 7.564 3.134 1.342 1.462 6.587 1.181 2.639 3.315 3.066 1.381 2.072 3.056 2.306 411 chr11 12742111 12751517 + 0 NA intron (NM_021961, intron 2 of 12) MIR|SINE|MIR 50845 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 0.913 nan 1.779 4.157 2.810 1.213 2.146 1.046 0.102 1.744 0.620 6.192 4.557 0.115 0.084 nan 1.006 0.950 3.033 5.064 4.762 6.043 2.522 0.662 0.801 1.801 nan 4.755 5.160 0.365 0.229 0.336 0.619 2.678 3.666 0.348 0.870 2.707 nan 5.666 3.588 0.779 0.839 2.146 6.192 0.259 0.528 0.165 0.126 2438 chr8 143252570 143307803 + 0 NA intron (NR_024378, intron 1 of 2) intron (NR_024378, intron 1 of 2) 469 NR_024378 619434 Hs.393308 NR_024378 ENSG00000254008 LINC00051 C8orf43|NCRNA00051 long intergenic non-protein coding RNA 51 ncRNA 1.501 0.815 nan 0.138 1.654 0.864 0.514 0.050 0.076 0.198 0.102 2.111 2.008 0.047 0.065 0.753 1.371 0.087 0.130 nan 4.827 nan 0.100 0.196 0.209 0.589 0.817 1.361 1.516 1.462 1.177 0.741 1.038 0.575 0.569 0.847 1.856 0.793 0.577 2.730 1.161 0.105 0.265 0.514 2.111 0.359 0.201 0.479 0.734 2154 chr6 76747714 76751896 + 0 NA intron (NM_001282368, intron 1 of 15) intron (NM_001282368, intron 1 of 15) 32590 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding nan nan 0.834 0.089 0.097 0.038 0.092 0.088 0.038 0.112 0.041 0.057 0.143 0.053 0.109 2.860 3.252 10.443 3.998 0.259 0.156 0.449 0.161 0.199 0.204 0.122 0.224 0.023 0.127 0.346 0.105 1.118 1.284 0.104 0.244 0.197 0.317 0.192 0.211 0.026 0.043 0.013 0.152 0.092 0.057 0.024 0.214 0.059 581 chr12 14921596 14930861 + 0 NA Intergenic Intergenic -1042 NM_177925 55766 Hs.524280 NM_018267 ENSG00000246705 H2AFJ H2AJ H2A histone family member J protein-coding 2.363 2.117 3.803 5.530 2.447 1.472 1.587 0.698 0.100 2.980 1.917 2.325 6.484 8.005 0.226 1.335 1.790 2.170 3.425 nan 4.911 8.511 3.526 8.713 8.803 1.233 1.431 4.185 6.334 3.407 4.366 1.070 1.969 3.491 3.194 3.159 4.564 1.956 1.156 1.949 2.449 0.595 1.164 1.587 2.325 0.198 0.984 0.912 1.637 1508 chr2 183578347 183584163 + 0 NA intron (NR_073367, intron 1 of 22) intron (NR_073367, intron 1 of 22) 487 NM_018981 54431 Hs.516632 NM_018981 ENSG00000077232 DNAJC10 ERdj5|JPDI|MTHr|PDIA19 DnaJ heat shock protein family (Hsp40) member C10 protein-coding 2.543 3.429 2.118 7.491 3.997 1.734 2.149 1.822 0.112 2.000 1.028 3.129 10.802 1.644 0.093 1.951 3.081 1.780 2.431 4.332 3.320 8.650 3.283 7.443 7.235 nan 2.946 15.565 17.862 2.569 2.242 1.145 2.159 2.689 2.635 3.300 nan 2.102 1.186 4.749 2.995 0.297 0.805 2.149 3.129 0.698 1.676 0.579 0.595 1314 chr19 39985047 39998849 + 0 NA intron (NM_016941, intron 3 of 7) intron (NM_016941, intron 3 of 7) 2391 NM_203486 10683 Hs.127792 NM_016941 ENSG00000090932 DLL3 SCDO1 delta like canonical Notch ligand 3 protein-coding 1.552 1.299 4.563 3.336 2.602 1.332 1.339 0.065 0.139 0.899 0.577 2.720 3.844 0.488 0.100 2.016 2.283 0.338 0.489 5.671 5.138 4.708 1.446 2.078 2.086 0.599 1.134 5.014 5.222 nan 3.288 1.315 2.194 1.489 1.075 1.852 3.400 2.602 1.508 2.216 2.998 0.172 0.617 1.339 2.720 0.365 2.558 0.892 1.377 1030 chr17 26644068 26653857 + 0 NA intron (NM_014573, intron 1 of 2) intron (NM_014573, intron 1 of 2) 2841 NM_014573 27346 Hs.199695 NM_014573 ENSG00000109084 TMEM97 MAC30 transmembrane protein 97 protein-coding nan nan nan 1.487 2.013 1.306 1.559 0.834 0.147 0.720 0.565 2.374 3.005 0.937 0.094 2.620 2.867 1.803 2.692 3.793 3.410 2.940 1.080 2.790 2.792 2.714 3.252 4.971 6.697 13.511 14.409 2.926 5.521 4.668 5.405 3.892 6.085 2.449 1.253 1.273 1.211 1.471 1.574 1.559 2.374 1.620 0.653 1.760 2.851 2262 chr7 55494814 55509411 + 0 NA TTS (NM_018697) TTS (NM_018697) 68971 NM_018697 55915 Hs.595384 NM_018697 ENSG00000132434 LANCL2 GPR69B|TASP LanC like 2 protein-coding nan 1.882 1.412 0.820 0.467 0.320 0.313 0.165 0.121 0.973 0.386 1.780 1.794 0.129 0.131 0.574 0.680 0.344 0.404 4.300 3.537 2.100 0.570 0.146 0.232 0.383 0.627 3.648 5.076 0.445 0.252 0.273 0.344 0.160 0.139 0.402 0.736 3.540 1.848 1.221 0.309 0.033 0.130 0.313 1.780 0.061 2.162 0.048 0.175 2463 chr8 146244836 146256223 + 0 NA Intergenic HERVK-int|LTR|ERVK -22244 NR_023392 286101 Hs.367856 NR_023392 ZNF252P ZNF252 zinc finger protein 252, pseudogene pseudo 1.073 1.485 nan 1.094 2.863 1.239 0.369 0.118 0.099 1.129 0.414 2.563 1.138 0.079 0.112 0.259 0.284 0.323 0.610 nan 4.546 nan 0.386 0.671 0.631 0.218 0.441 0.550 0.722 0.641 0.496 0.575 0.526 0.375 0.452 0.361 0.566 3.246 1.352 0.195 1.174 0.050 0.133 0.369 2.563 0.060 0.375 0.111 0.205 706 chr13 37454263 37497251 + 0 NA intron (NM_005905, intron 1 of 5) AluSz6|SINE|Alu 18652 NM_001127217 4093 Hs.123119 NM_005905 ENSG00000120693 SMAD9 MADH6|MADH9|PPH2|SMAD8|SMAD8/9|SMAD8A|SMAD8B SMAD family member 9 protein-coding 1.830 2.594 2.632 1.957 3.310 1.842 1.337 0.238 0.135 1.216 0.606 4.482 4.285 0.163 0.072 1.437 1.166 1.136 1.053 3.830 3.831 3.288 1.050 0.518 0.483 1.781 2.210 0.310 0.424 1.326 1.140 0.695 1.646 2.125 3.200 3.512 6.366 1.302 0.618 0.315 0.755 0.567 1.319 1.337 4.482 0.186 1.227 0.824 2.880 1804 chr3 129216519 129227547 + 0 NA intron (NM_001280546, intron 18 of 27) intron (NM_001280546, intron 18 of 27) -25449 NM_000539 6010 Hs.247565 NM_000539 ENSG00000163914 RHO CSNBAD1|OPN2|RP4 rhodopsin protein-coding 1.668 nan 1.454 0.767 0.304 0.172 0.453 0.325 0.178 1.277 0.795 0.570 0.613 0.076 0.088 0.452 0.572 0.306 0.466 2.987 3.162 1.911 0.852 0.464 0.507 1.477 nan 1.316 1.595 2.240 2.251 0.247 0.423 0.201 0.127 0.645 1.263 3.224 1.598 1.453 1.137 0.043 0.083 0.453 0.570 1.990 1.930 0.089 0.279 717 chr13 70483862 70498509 + 0 NA intron (NM_020866, intron 4 of 10) (TATATG)n|Simple_repeat|Simple_repeat -190160 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand (non-protein coding) ncRNA nan 1.006 0.830 0.036 0.294 0.219 1.286 0.060 0.065 0.096 0.104 0.122 0.379 0.037 0.103 0.552 0.431 0.187 0.258 0.643 0.877 nan 1.494 0.138 0.131 0.160 0.217 0.212 0.165 nan 0.347 0.120 0.208 0.459 0.355 1.254 nan 0.213 0.147 0.572 0.208 0.105 0.342 1.286 0.122 0.086 0.042 0.040 0.172 1552 chr2 235577634 235604438 + 0 NA promoter-TSS (NR_132376) promoter-TSS (NR_132376) -276 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 1.112 nan 1.389 5.056 6.894 3.838 1.724 0.584 0.072 1.979 1.341 9.460 6.432 0.064 0.087 1.138 1.500 0.705 1.801 2.113 2.226 5.886 3.249 0.361 0.283 1.059 1.355 4.235 nan 0.591 0.365 0.868 1.851 1.661 1.552 0.392 0.658 2.733 1.073 3.732 0.861 0.531 1.493 1.724 9.460 0.137 0.734 2.545 0.055 799 chr14 61185452 61192600 + 0 NA intron (NM_017420, intron 1 of 2) CpG 1826 NM_017420 51804 Hs.97849 NM_017420 ENSG00000100625 SIX4 AREC3 SIX homeobox 4 protein-coding nan nan 5.252 6.026 5.490 3.314 4.139 2.794 0.295 1.158 0.487 7.977 8.599 3.406 0.102 2.328 3.116 3.186 4.502 12.328 10.031 3.100 0.906 nan 8.643 1.827 2.395 5.034 nan 5.497 7.112 2.592 6.908 3.372 2.336 1.099 1.764 1.795 1.038 5.359 10.062 0.680 7.517 4.139 7.977 0.938 1.102 2.363 0.451 1964 chr5 38420757 38429486 + 0 NA exon (NM_182798, exon 8 of 17) exon (NM_182798, exon 8 of 17) -20457 NM_182801 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 2.714 1.378 nan 0.314 0.309 0.221 0.327 0.185 0.204 0.180 0.187 0.221 0.496 0.063 0.115 0.401 0.129 0.307 0.375 0.347 0.397 0.181 0.105 0.306 0.297 0.292 0.650 0.775 0.716 13.209 14.341 0.201 0.267 0.473 0.640 1.369 4.086 0.830 0.790 0.042 0.214 0.219 2.478 0.327 0.221 2.261 0.117 0.011 1.740 2381 chr8 74221906 74229902 + 0 NA intron (NR_125388, intron 5 of 5) intron (NR_125388, intron 5 of 5) 19067 NM_172037 157506 Hs.244940 NM_172037 ENSG00000121039 RDH10 SDR16C4 retinol dehydrogenase 10 protein-coding 2.077 2.126 1.660 1.313 6.075 3.706 0.881 0.291 0.047 0.588 0.438 1.528 1.205 1.679 0.112 0.360 0.295 0.402 0.798 3.053 3.255 2.018 0.572 0.302 0.297 0.695 1.209 2.415 3.180 0.381 0.209 0.417 0.449 3.303 2.581 0.389 0.989 5.622 2.988 0.487 1.980 0.443 0.663 0.881 1.528 0.050 2.046 0.135 0.115 1001 chr17 2290699 2342983 + 0 NA intron (NR_028335, intron 2 of 2) AluSx|SINE|Alu 1889 NR_028335 284009 Hs.632244 NM_001025459 LOC284009 - uncharacterized LOC284009 ncRNA 2.298 1.675 1.575 1.228 1.939 1.029 1.978 0.658 0.163 0.779 0.279 2.222 3.910 1.148 0.092 1.692 1.647 1.522 2.632 4.014 3.809 2.861 1.990 3.033 3.151 1.072 1.653 2.940 4.872 1.499 1.411 0.447 0.626 0.975 1.097 2.439 5.066 1.219 0.738 2.702 2.331 0.249 0.711 1.978 2.222 0.587 1.336 0.242 1.968 2067 chr6 13144582 13149487 + 0 NA intron (NM_001322314, intron 2 of 12) intron (NM_001322314, intron 2 of 12) 133146 NM_001322314 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 1.078 nan 0.631 0.124 0.354 0.228 0.218 0.154 0.130 0.142 0.133 0.098 0.132 0.022 0.087 1.097 0.590 10.198 5.280 0.392 0.397 0.519 0.170 0.247 0.281 1.004 1.326 0.057 0.079 0.554 0.300 0.237 0.409 0.116 0.148 0.396 0.304 1.979 0.832 0.056 0.091 0.038 0.437 0.218 0.098 0.042 0.020 0.025 1149 chr18 2654321 2657778 + 0 NA promoter-TSS (NR_033754) promoter-TSS (NR_033754) 163 NM_015295 23347 Hs.8118 NM_015295 ENSG00000101596 SMCHD1 - structural maintenance of chromosomes flexible hinge domain containing 1 protein-coding 7.997 6.095 5.629 8.431 5.663 2.957 2.516 4.138 0.325 3.501 1.250 11.993 nan 5.977 0.166 8.237 8.209 7.897 11.816 15.178 12.122 14.089 9.528 19.654 18.038 3.977 4.969 8.407 14.669 nan 8.549 3.560 6.219 10.396 10.915 9.040 nan 5.187 2.690 5.406 5.007 2.186 4.541 2.516 11.993 1.865 2.949 1.364 1.735 999 chr17 1586852 1589290 + 0 NA intron (NM_006445, intron 1 of 42) CpG 105 NM_006445 10594 Hs.181368 NM_006445 ENSG00000174231 PRPF8 HPRP8|PRP8|PRPC8|RP13|SNRNP220 pre-mRNA processing factor 8 protein-coding 3.736 2.453 2.570 4.266 7.750 3.885 8.809 1.543 0.794 1.835 1.055 5.958 8.721 2.659 0.082 10.702 9.933 5.989 7.903 8.776 10.069 6.381 4.088 11.218 11.502 3.376 4.352 5.279 7.272 7.592 9.481 5.005 8.085 2.207 2.602 4.802 6.720 2.337 1.187 2.609 3.700 0.707 2.827 8.809 5.958 5.657 3.917 2.236 2.872 2216 chr7 2135028 2242264 + 0 NA intron (NM_001013836, intron 11 of 18) intron (NM_001013836, intron 11 of 18) 83937 NM_001013837 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 MAD1 mitotic arrest deficient like 1 protein-coding 1.260 1.010 1.915 0.837 0.414 0.208 0.746 0.686 0.126 0.280 0.212 1.576 nan 0.186 0.140 0.982 1.487 0.359 nan 3.133 3.198 nan 0.305 0.882 0.890 0.451 0.788 nan 5.915 0.385 0.348 0.597 0.819 0.818 1.058 0.509 1.055 0.427 0.352 1.838 0.449 0.167 0.411 0.746 1.576 0.143 0.634 0.437 0.328 2247 chr7 27221434 27229721 + 0 NA promoter-TSS (NM_005523) promoter-TSS (NM_005523) 550 NR_002795 221883 Hs.587427 NR_002795 ENSG00000240990 HOXA11-AS HOXA-AS5|HOXA11-AS1|HOXA11AS|HOXA11S|NCRNA00076 HOXA11 antisense RNA ncRNA 12.518 1.416 1.483 0.405 0.579 0.368 0.400 0.576 0.174 1.175 0.760 0.623 1.273 0.932 0.139 1.648 2.168 2.785 nan 2.583 2.176 2.999 0.553 0.739 0.773 3.209 4.238 1.739 1.753 1.341 1.522 2.325 3.986 3.688 2.818 0.567 nan 2.458 1.470 1.525 0.685 1.214 0.361 0.400 0.623 0.918 0.137 1.157 0.761 705 chr13 34728982 34743215 + 0 NA Intergenic Intergenic 343892 NM_181558 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 1.429 1.354 1.338 0.424 0.233 0.146 0.401 1.062 0.046 1.743 0.842 0.571 1.362 0.053 0.066 0.673 0.553 0.702 2.379 0.612 0.655 5.511 3.831 0.116 0.128 1.306 1.764 1.086 1.295 0.599 0.322 0.298 0.411 0.808 1.769 0.604 1.235 0.977 0.683 0.094 0.684 0.187 0.062 0.401 0.571 0.191 2.061 0.117 0.332 2000 chr5 88165204 88180613 + 0 NA intron (NM_001193347, intron 2 of 11) UCON20|Unknown|Unknown -6239 NR_136219 101929423 Hs.130138 NR_104031 ENSG00000248309 MEF2C-AS1 - MEF2C antisense RNA 1 ncRNA 0.618 1.022 0.468 0.289 0.333 0.269 0.049 0.981 0.084 0.529 0.396 0.124 2.426 0.278 0.113 0.301 0.231 0.529 0.891 0.691 0.474 0.958 0.322 2.283 2.442 3.028 3.604 0.455 0.516 0.789 0.688 0.532 1.246 0.345 0.245 0.257 nan 0.819 0.463 0.021 0.276 0.031 0.049 0.124 1.105 1.227 0.129 855 chr15 31689166 31696368 + 0 NA intron (NM_001302461, intron 1 of 1) L2a|LINE|L2 73709 NM_015995 51621 Hs.376443 NM_015995 ENSG00000169926 KLF13 BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1 Kruppel like factor 13 protein-coding 1.280 nan nan 0.750 1.235 0.558 0.521 0.508 0.045 0.628 0.262 0.759 2.713 0.074 0.037 0.652 1.561 0.325 0.689 0.619 0.810 2.125 0.487 0.256 0.347 0.385 0.717 0.968 1.077 1.864 1.816 0.652 1.184 2.281 1.767 0.433 0.659 0.656 0.422 0.616 0.630 0.597 0.417 0.521 0.759 3.262 1.804 0.853 0.174 177 chr1 151029768 151038070 + 0 NA intron (NM_006818, intron 1 of 1) intron (NM_006818, intron 1 of 1) 1768 NM_006818 10962 Hs.75823 NM_006818 ENSG00000213190 MLLT11 AF1Q myeloid/lymphoid or mixed-lineage leukemia; translocated to, 11 protein-coding nan nan 5.423 3.931 3.932 1.674 4.053 2.579 0.542 3.299 1.557 4.232 16.126 3.594 0.132 6.905 5.878 3.648 5.477 9.770 nan 8.360 2.268 14.753 16.019 5.224 6.396 8.783 12.814 4.540 4.351 4.239 8.179 5.151 6.058 5.529 7.075 3.115 1.268 4.188 4.304 0.992 1.937 4.053 4.232 1.182 4.406 3.554 2.179 2594 chrX 53709307 53714226 + 0 NA intron (NM_031407, intron 2 of 83) intron (NM_031407, intron 2 of 83) 1908 NM_031407 10075 Hs.136905 NM_031407 ENSG00000086758 HUWE1 ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MULE|URE-B1|UREB1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase protein-coding 5.852 3.932 2.770 4.614 8.129 4.673 2.902 2.287 0.167 2.682 1.004 4.448 12.117 5.235 0.131 3.456 3.218 7.940 9.080 11.806 9.928 8.209 4.851 18.935 19.501 4.000 5.026 9.270 17.412 13.536 14.575 5.391 8.503 5.017 5.573 11.616 9.038 3.748 1.834 2.858 3.030 0.828 2.679 2.902 4.448 1.274 5.012 2.452 2.582 790 chr14 55492305 55496158 + 0 NA promoter-TSS (NM_007086) promoter-TSS (NM_007086) 387 NM_199421 122809 Hs.744302 NM_080867 ENSG00000180008 SOCS4 SOCS7 suppressor of cytokine signaling 4 protein-coding nan nan 4.163 7.026 3.945 2.363 4.987 3.562 0.252 2.035 0.855 4.531 9.599 3.546 0.217 6.102 4.227 6.613 9.839 12.042 10.811 9.126 4.865 17.207 17.839 6.125 7.508 9.151 15.240 12.401 11.444 5.595 8.699 9.484 12.805 4.926 5.332 5.165 2.548 6.098 3.577 1.408 2.039 4.987 4.531 1.101 2.778 1.950 1.232 554 chr12 6928760 6939805 + 0 NA intron (NM_019858, intron 2 of 4) intron (NM_019858, intron 2 of 4) -3256 NM_014262 10536 Hs.631655 NM_014262 ENSG00000110811 P3H3 GRCB|HSU47926|LEPREL2 prolyl 3-hydroxylase 3 protein-coding 4.142 nan nan 1.942 1.574 0.945 3.115 0.133 0.020 1.108 0.593 1.735 4.208 2.208 0.125 0.792 1.927 1.163 2.105 nan 5.915 6.436 2.419 1.761 1.812 3.794 5.476 1.757 2.107 3.144 3.164 1.383 2.933 1.924 1.296 3.114 nan 1.177 0.610 2.233 3.692 0.568 0.520 3.115 1.735 5.076 1.023 1.319 2.701 1468 chr2 118469680 118477159 + 0 NA Intergenic AluSc5|SINE|Alu -98836 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 MrDb DEAD-box helicase 18 protein-coding 0.538 nan 0.675 0.084 0.379 0.128 0.102 0.060 0.065 0.105 0.086 0.208 nan 0.029 0.060 1.234 2.435 1.025 0.858 0.333 nan 0.173 0.089 0.936 1.001 0.134 0.214 0.219 0.294 0.380 0.242 8.608 5.723 0.033 0.020 0.115 0.523 0.204 0.346 0.030 0.037 0.025 0.075 0.102 0.208 0.095 3.029 0.016 1059 chr17 37023139 37040577 + 0 NA intron (NR_073384, intron 1 of 7) intron (NR_073384, intron 1 of 7) 5746 NR_073384 3927 Hs.741156 NM_006148 ENSG00000002834 LASP1 Lasp-1|MLN50 LIM and SH3 protein 1 protein-coding nan 1.923 1.370 0.963 2.690 1.515 1.405 1.510 0.340 0.864 0.469 1.255 5.733 2.807 0.107 2.776 4.094 1.416 2.373 nan 1.935 2.623 0.823 3.499 3.992 1.092 1.457 2.791 3.584 nan 1.731 1.102 2.409 1.428 1.651 1.284 3.078 1.067 0.604 1.041 1.609 0.317 0.749 1.405 1.255 0.467 1.071 1.206 1.117 1789 chr3 114563223 114602014 + 0 NA intron (NR_121662, intron 2 of 6) intron (NR_121662, intron 2 of 6) -9262 NR_126422 104413890 Hs.612732 NR_126422 ENSG00000239946 ZBTB20-AS3 - ZBTB20 antisense RNA 3 ncRNA 1.279 nan 1.114 0.156 5.009 2.686 0.281 0.283 0.104 1.063 0.608 1.363 0.358 0.039 0.071 0.921 0.573 1.000 0.874 0.833 nan 5.519 2.813 0.832 0.815 nan 4.419 0.474 0.434 1.120 0.705 0.241 0.299 1.263 1.442 0.450 1.414 1.498 0.954 1.499 0.255 0.302 0.076 0.281 1.363 0.257 0.358 0.074 0.360 1106 chr17 66504204 66511785 + 0 NA promoter-TSS (NM_212471) promoter-TSS (NM_212471) 73 NM_212471 5573 Hs.280342 NM_002734 ENSG00000108946 PRKAR1A ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|TSE1 protein kinase cAMP-dependent type I regulatory subunit alpha protein-coding 4.991 nan 6.980 7.454 7.795 4.240 3.308 2.401 0.187 4.229 1.932 5.292 13.135 3.135 0.109 4.168 5.380 4.050 5.075 9.130 7.843 5.558 2.973 5.055 5.367 2.433 nan 13.631 17.280 6.183 5.655 2.000 4.547 6.357 5.871 3.232 3.580 5.152 2.348 1.519 4.209 1.134 2.274 3.308 5.292 1.194 3.744 1.609 0.738 1379 chr19 58890765 58899995 + 0 NA Intergenic AluSc8|SINE|Alu 2845 NR_039910 100616168 NR_039910 ENSG00000266640 MIR4754 mir-4754 microRNA 4754 ncRNA 4.929 3.036 5.343 4.137 6.613 3.766 4.415 1.593 0.385 2.001 0.942 4.151 5.141 3.439 0.192 8.930 7.767 3.993 5.603 8.162 7.510 9.967 4.647 4.108 4.407 4.195 6.066 6.328 8.609 8.841 9.372 3.741 4.970 6.200 6.532 5.464 5.900 4.608 2.512 3.975 4.586 1.210 2.496 4.415 4.151 1.989 2.123 1.298 1.961 1063 chr17 37754916 37794597 + 0 NA Intergenic Intergenic -8421 NM_032192 84152 Hs.286192 NM_032192 ENSG00000131771 PPP1R1B DARPP-32|DARPP32 protein phosphatase 1 regulatory inhibitor subunit 1B protein-coding nan 1.047 1.755 0.520 2.145 1.114 0.752 0.415 0.126 0.647 0.423 1.016 1.765 0.377 0.073 3.722 5.985 0.698 0.975 nan 2.400 1.633 0.610 2.507 2.650 1.032 1.559 2.594 3.392 nan 3.258 1.034 1.528 0.920 0.789 0.676 0.972 1.370 0.755 0.572 0.933 0.270 0.378 0.752 1.016 1.185 0.580 0.934 0.251 2124 chr6 41377866 41399089 + 0 NA Intergenic AluSc5|SINE|Alu -81705 NR_120347 103106903 Hs.563396 NR_120347 ENSG00000226917 LINC01276 - long intergenic non-protein coding RNA 1276 ncRNA 1.701 0.925 1.213 0.959 2.271 1.226 0.591 0.175 0.106 0.361 0.201 1.644 1.203 0.182 0.103 2.028 2.794 0.695 0.750 1.192 1.287 3.071 1.013 1.219 1.284 0.182 0.337 2.054 nan 0.802 0.515 2.059 4.660 1.182 1.302 0.485 0.943 1.608 1.085 0.869 0.205 0.477 0.064 0.591 1.644 0.437 0.407 4.290 0.134 2107 chr6 31800987 31805546 + 0 NA TTS (NR_002745) TTS (NR_002745) 226 NR_002745 26801 NR_002745 ENSG00000201823 SNORD48 RNU48|U48 small nucleolar RNA, C/D box 48 snoRNA 5.159 3.810 3.963 7.506 6.547 3.106 6.976 4.032 1.136 2.964 1.947 10.878 12.698 6.667 0.299 7.945 7.642 7.130 10.250 nan 8.535 9.430 4.681 12.654 13.524 4.492 5.570 11.288 12.253 9.977 8.825 4.966 8.843 6.754 7.949 6.965 10.262 4.133 1.984 5.147 4.859 1.907 3.818 6.976 10.878 2.268 2.762 3.210 3.324 328 chr10 179851 183007 + 0 NA promoter-TSS (NM_001202464) promoter-TSS (NM_001202464) 5 NM_001202464 10771 Hs.292265 NM_006624 ENSG00000015171 ZMYND11 BRAM1|BS69|MRD30 zinc finger MYND-type containing 11 protein-coding 6.672 4.445 6.174 5.709 6.423 3.650 4.864 5.616 0.869 3.473 0.898 13.302 11.465 4.993 0.141 10.957 10.827 8.139 13.036 12.319 10.125 16.071 8.522 12.694 12.350 4.362 6.706 6.583 12.676 5.441 6.686 5.381 10.372 4.565 3.280 5.292 2.064 1.444 0.953 2.097 6.838 0.962 4.761 4.864 13.302 0.806 3.060 2.415 1.570 2122 chr6 41239797 41265835 + 0 NA intron (NM_001242589, intron 1 of 2) intron (NM_001242589, intron 1 of 2) 1667 NM_018643 54210 Hs.283022 NM_018643 ENSG00000124731 TREM1 CD354|TREM-1 triggering receptor expressed on myeloid cells 1 protein-coding 0.775 1.427 0.729 1.329 3.277 1.811 0.335 0.115 0.123 0.319 0.192 0.925 2.346 0.050 0.111 1.238 1.798 0.226 0.586 1.451 1.504 3.629 3.187 0.306 0.361 0.162 0.270 4.733 nan 0.397 0.248 0.516 0.942 0.127 0.153 0.171 0.319 1.574 1.109 3.577 1.356 0.033 0.045 0.335 0.925 0.026 0.982 0.357 0.086 1164 chr18 31151802 31166634 + 0 NA intron (NM_030632, intron 1 of 11) intron (NM_030632, intron 1 of 11) 677 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 additional sex combs like 3, transcriptional regulator protein-coding nan 1.175 0.854 1.538 1.060 0.469 1.452 0.071 0.109 0.890 0.597 3.215 5.202 1.478 0.076 0.564 0.500 1.109 1.160 4.924 4.588 3.523 1.090 0.823 0.888 1.405 1.860 nan 6.257 0.959 0.720 0.199 0.384 6.749 6.590 0.623 1.104 4.411 2.574 1.721 1.703 1.866 0.497 1.452 3.215 0.354 1.253 0.087 0.117 2244 chr7 27134606 27157790 + 0 NA 3' UTR (NM_030661, exon 3 of 3) 3' UTR (NM_030661, exon 3 of 3) -3804 NM_006735 3199 Hs.445239 NM_006735 ENSG00000105996 HOXA2 HOX1K|MCOHI homeobox A2 protein-coding 2.211 1.373 1.104 0.308 0.912 0.547 0.503 0.240 0.035 0.531 0.325 0.560 1.407 2.695 0.169 12.954 18.729 6.530 nan 1.152 1.252 1.206 0.388 2.027 1.981 1.222 1.835 1.630 1.686 1.177 1.104 3.845 8.003 2.455 1.692 0.349 nan 0.985 0.585 0.453 0.845 1.071 1.542 0.503 0.560 0.169 0.018 3.092 0.225 1006 chr17 6914526 6919411 + 0 NA intron (NR_037715, intron 2 of 3) intron (NR_037715, intron 2 of 3) -1088 NM_174893 124944 Hs.511801 NM_174893 ENSG00000258315 C17orf49 BAP18|HEPIS chromosome 17 open reading frame 49 protein-coding 5.286 3.126 3.063 2.968 4.794 2.608 3.749 3.976 0.361 1.725 0.555 5.723 8.916 12.281 0.594 6.472 6.969 7.952 11.973 8.644 9.186 6.304 4.325 8.911 9.212 4.160 5.022 7.430 11.273 3.421 3.226 3.994 5.663 2.674 3.504 6.378 7.897 2.373 1.289 4.021 3.920 0.798 1.415 3.749 5.723 1.683 5.900 1.052 2.880 375 chr10 115711079 115723532 + 0 NA Intergenic L1MB2|LINE|L1 -86501 NM_000684 153 Hs.99913 NM_000684 ENSG00000043591 ADRB1 ADRB1R|B1AR|BETA1AR|RHR adrenoceptor beta 1 protein-coding 0.676 nan 0.623 0.838 3.815 2.008 0.332 0.162 0.051 2.286 0.649 0.317 2.198 0.052 0.064 0.416 0.332 0.937 2.634 0.105 0.133 8.337 6.126 0.257 0.271 0.223 0.388 9.143 12.838 0.161 0.047 2.354 3.516 3.868 3.548 0.198 0.244 2.621 1.573 1.035 2.180 0.525 0.135 0.332 0.317 0.016 0.882 2.589 0.200 950 chr16 30339973 30368823 + 0 NA Intergenic Intergenic -7703 NR_002453 595101 Hs.654650 NR_002453 ENSG00000183604 SMG1P5 - SMG1P5, nonsense mediated mRNA decay associated PI3K related kinase pseudogene 5 pseudo 1.685 0.955 1.249 1.771 1.170 0.650 0.971 0.640 0.117 0.505 0.247 0.885 3.951 0.834 0.095 1.107 1.092 1.218 1.837 1.341 1.277 5.689 1.750 2.419 2.452 1.100 1.708 2.428 3.410 1.768 1.668 0.796 1.156 2.008 2.396 1.067 1.417 1.240 0.646 1.031 0.531 0.448 0.468 0.971 0.885 0.321 0.891 0.302 0.343 2334 chr7 150053936 150087547 + 0 NA 3' UTR (NM_001099695, exon 3 of 3) 3' UTR (NM_001099695, exon 3 of 3) 2483 NM_014374 29803 Hs.647086 NM_013400 ENSG00000214022 REPIN1 AP4|RIP60|ZNF464|Zfp464 replication initiator 1 protein-coding 3.208 1.431 nan 2.708 3.145 1.560 2.592 0.961 0.158 2.721 1.340 6.764 3.805 2.046 0.134 4.730 5.081 2.194 3.083 4.458 4.208 4.156 1.837 3.933 4.100 1.593 2.184 3.899 4.995 3.199 2.956 3.380 5.310 4.020 3.770 3.028 4.708 4.126 1.968 2.296 2.914 1.164 0.745 2.592 6.764 0.779 3.336 3.439 1.425 1858 chr3 180980161 181048642 + 0 NA intron (NR_075093, intron 2 of 4) (TA)n|Simple_repeat|Simple_repeat 64876 NR_125730 103625684 NR_125730 ENSG00000207357 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 0.846 1.063 0.682 0.143 0.346 0.180 0.316 0.128 0.131 0.175 0.214 0.104 0.499 0.095 0.096 0.272 0.171 0.172 0.156 0.379 0.461 7.296 3.349 0.133 0.132 0.221 0.341 0.382 0.495 0.870 0.543 0.125 0.160 0.135 0.142 0.190 0.314 0.585 0.460 0.027 0.122 0.014 0.072 0.316 0.104 0.013 0.047 0.023 0.056 2224 chr7 7817877 7850336 + 0 NA intron (NM_001302350, intron 3 of 4) MER4D|LTR|ERV1 -75868 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 1.663 1.345 1.532 0.286 0.606 0.262 0.162 0.152 0.124 0.391 0.186 0.753 nan 0.110 0.171 0.583 0.458 0.314 nan 0.573 0.856 nan 0.374 0.492 0.449 1.327 1.669 nan 0.563 0.769 0.509 0.169 0.269 0.387 0.855 1.669 4.377 0.704 0.628 0.094 0.076 0.056 0.117 0.162 0.753 0.069 0.359 0.098 1.493 1591 chr20 21915788 21926947 + 0 NA Intergenic LTR16C|LTR|ERVL -113361 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 0.585 1.000 nan 0.093 0.232 0.126 0.023 0.141 0.116 0.147 0.134 0.097 0.269 0.020 0.051 0.507 0.403 0.099 0.189 0.218 0.282 0.171 0.134 0.201 0.183 0.235 0.304 0.236 0.336 0.390 0.140 0.226 0.428 1.994 2.774 0.149 0.192 0.607 0.411 0.035 0.048 0.436 0.023 0.097 4.262 0.036 0.033 2090 chr6 21173402 21209846 + 0 NA intron (NM_017774, intron 13 of 15) intron (NM_017774, intron 13 of 15) 320499 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 1.390 1.658 nan 1.478 2.249 1.226 3.110 0.341 0.110 0.806 0.745 1.974 nan 0.063 0.100 0.415 0.409 0.623 nan 1.567 1.978 nan 0.891 0.597 0.599 1.593 1.678 1.434 1.444 2.132 1.493 0.183 0.283 1.645 1.877 0.482 1.309 1.786 0.838 3.356 1.024 0.480 0.192 3.110 1.974 0.534 0.309 0.070 0.457 1319 chr19 41767670 41773593 + 0 NA promoter-TSS (NM_001321211) promoter-TSS (NM_001321211) -324 NM_001301016 11100 Hs.155218 NM_007040 ENSG00000105323 HNRNPUL1 E1B-AP5|E1BAP5|HNRPUL1 heterogeneous nuclear ribonucleoprotein U like 1 protein-coding 8.525 5.179 7.363 8.094 9.305 5.355 7.616 3.638 0.864 3.476 1.530 7.931 10.456 8.674 0.293 7.942 7.720 8.943 11.637 15.152 14.284 11.740 8.422 24.612 26.813 6.504 7.994 9.506 15.529 15.907 17.395 12.586 17.443 9.950 12.569 12.758 10.283 5.498 2.746 6.331 9.106 2.990 4.773 7.616 7.931 2.052 3.661 4.827 3.908 837 chr14 100787750 100817450 + 0 NA intron (NM_173701, intron 10 of 10) AluY|SINE|Alu 12921 NM_207117 283600 Hs.108268 NM_207117 ENSG00000140107 SLC25A47 C14orf68|HDMCP|HMFN1655 solute carrier family 25 member 47 protein-coding 1.776 1.164 0.917 1.608 0.550 0.285 0.807 0.259 0.162 0.567 0.426 0.312 0.657 0.091 0.084 0.411 0.527 0.289 0.691 1.922 1.834 2.665 0.708 0.200 0.235 0.335 0.627 2.952 3.209 1.250 1.046 0.318 0.337 1.321 0.870 0.599 1.329 2.793 1.425 0.599 2.850 0.259 0.271 0.807 0.312 0.545 0.967 0.036 0.505 1370 chr19 50429899 50434334 + 0 NA promoter-TSS (NM_001193646) promoter-TSS (NM_001193646) 157 NM_012068 22809 Hs.9754 NM_012068 ENSG00000169136 ATF5 ATFX|HMFN0395 activating transcription factor 5 protein-coding 7.995 3.655 6.328 6.097 16.424 9.602 5.962 2.631 0.685 3.492 1.478 6.823 8.760 8.611 0.285 8.091 8.367 6.774 8.896 14.457 12.978 10.653 6.283 20.352 21.398 7.057 8.821 9.900 14.460 11.868 12.940 9.251 13.670 10.421 11.638 8.372 8.998 6.124 3.439 7.270 9.261 2.578 5.573 5.962 6.823 2.705 3.381 4.186 4.019 643 chr12 85861608 85886494 + 0 NA Intergenic THE1B|LTR|ERVL-MaLR 200015 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 0.771 0.914 0.752 0.253 0.409 0.207 0.119 0.352 0.143 0.475 0.257 0.324 0.653 0.052 0.111 0.355 0.248 0.294 0.382 0.417 0.461 5.007 1.593 0.292 0.334 1.111 1.302 0.642 0.712 0.524 0.221 0.137 0.235 1.603 1.891 0.433 0.619 1.227 0.777 0.018 0.068 0.418 0.047 0.119 0.324 0.012 0.196 0.075 0.204 621 chr12 56508488 56514201 + 0 NA promoter-TSS (NM_001303124) promoter-TSS (NM_001303124) -660 NM_032786 84872 Hs.632706 NM_032786 ENSG00000135482 ZC3H10 ZC3HDC10 zinc finger CCCH-type containing 10 protein-coding nan 4.273 3.179 5.928 5.609 3.317 4.002 2.387 0.423 3.033 1.538 5.729 11.563 4.141 0.178 nan 7.753 7.920 11.040 9.455 nan 13.543 7.650 13.160 14.282 6.544 nan 12.057 nan 6.764 8.476 2.972 5.608 11.095 11.346 6.139 7.875 6.367 2.959 2.202 3.978 1.871 1.527 4.002 5.729 1.567 3.677 2.015 2.352 1833 chr3 168172583 168179053 + 0 NA intron (NR_021485, intron 3 of 15) intron (NR_021485, intron 3 of 15) -93824 NR_030294 693136 NR_030294 ENSG00000207717 MIR551B MIRN551B|mir-551b microRNA 551b ncRNA 1.069 1.026 0.891 0.125 0.235 0.132 0.397 0.766 0.173 0.459 0.257 0.037 0.194 0.085 0.083 0.262 0.238 0.164 0.246 0.417 0.603 1.289 0.549 0.282 0.259 8.436 7.997 nan 0.558 nan 0.358 0.152 0.275 2.494 6.201 0.441 0.938 1.193 0.507 0.009 0.291 0.794 0.218 0.397 0.037 0.136 0.172 0.046 0.194 1028 chr17 20943530 20948458 + 0 NA exon (NM_015276, exon 1 of 13) exon (NM_015276, exon 1 of 13) 358 NM_015276 23326 Hs.462492 NM_015276 ENSG00000124422 USP22 USP3L ubiquitin specific peptidase 22 protein-coding nan nan nan 5.755 10.011 5.597 6.116 1.594 0.391 1.871 1.017 7.127 8.220 7.077 0.229 7.215 7.049 7.218 9.124 9.619 8.949 9.069 4.501 6.836 6.753 4.484 5.621 9.854 14.273 12.631 14.136 2.707 4.694 5.876 6.352 10.376 nan 2.278 1.055 4.146 3.988 1.218 2.527 6.116 7.127 1.751 6.248 1.392 3.949 490 chr11 74985846 74992149 + 0 NA intron (NM_020251, intron 8 of 14) Plat_L3|LINE|CR1 37047 NM_001195528 100507050 Hs.577323 NM_001195528 ENSG00000261594 TPBGL - trophoblast glycoprotein-like protein-coding nan 2.657 0.908 2.794 1.035 0.434 0.528 0.107 0.037 0.274 0.102 5.237 2.539 0.121 0.108 0.780 0.871 0.230 0.455 8.299 9.205 2.888 0.723 0.983 1.108 0.527 1.037 9.012 7.999 2.752 2.703 0.454 0.756 0.930 0.506 0.559 1.571 1.558 1.173 8.830 4.956 0.198 0.612 0.528 5.237 1.045 0.129 0.134 0.969 1981 chr5 57097356 57143159 + 0 NA Intergenic Intergenic 74732 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LOC101928539 - uncharacterized LOC101928539 ncRNA nan nan 0.964 0.056 0.171 0.098 0.282 0.890 0.131 0.058 0.058 0.018 0.697 2.689 0.182 0.148 0.098 0.869 3.196 0.148 0.176 nan 0.091 0.128 0.104 0.307 0.563 0.171 0.205 nan 0.198 0.078 0.098 0.200 0.242 0.268 0.644 0.364 0.356 0.047 0.083 0.042 0.043 0.282 0.018 0.053 0.062 0.021 0.124 1260 chr19 10981012 11010991 + 0 NA intron (NM_199141, intron 1 of 15) intron (NM_199141, intron 1 of 15) 13748 NM_199141 10498 Hs.323213 NM_199141 ENSG00000142453 CARM1 PRMT4 coactivator associated arginine methyltransferase 1 protein-coding 2.163 2.106 1.715 0.911 0.825 0.565 2.214 0.403 0.173 0.364 0.340 2.610 1.459 0.630 0.097 3.446 4.381 2.809 2.831 2.286 2.376 2.444 0.857 1.959 1.920 0.945 1.592 3.414 5.223 3.084 3.195 0.877 1.740 2.741 2.586 1.583 2.902 1.030 0.664 0.454 0.672 0.780 0.998 2.214 2.610 0.901 0.368 0.886 0.862 1253 chr19 5621622 5628777 + 0 NA intron (NM_002967, intron 1 of 20) intron (NM_002967, intron 1 of 20) 2153 NM_001320571 6294 Hs.728802 NM_002967 ENSG00000160633 SAFB HAP|HET|SAB-B1|SAF-B|SAF-B1|SAFB1 scaffold attachment factor B protein-coding 3.388 2.213 3.233 3.326 4.181 2.520 2.970 1.698 0.113 1.490 0.871 4.540 6.896 2.663 0.130 3.312 3.380 4.527 6.352 5.537 5.889 3.409 1.614 9.067 9.152 3.982 4.875 5.730 nan 9.686 8.283 1.863 4.048 2.954 4.637 4.101 4.525 2.988 1.666 2.905 2.264 0.825 1.884 2.970 4.540 1.379 1.979 0.946 1.325 1194 chr18 47337144 47341535 + 0 NA intron (NM_006111, intron 1 of 9) intron (NM_006111, intron 1 of 9) 912 NM_006111 10449 Hs.200136 NM_006111 ENSG00000167315 ACAA2 DSAEC acetyl-CoA acyltransferase 2 protein-coding nan 4.916 4.168 6.518 5.326 2.592 9.360 1.578 0.109 1.895 0.636 6.040 18.205 3.763 0.147 5.978 7.651 5.649 9.148 13.266 11.803 14.459 4.744 4.241 4.549 3.803 4.389 5.437 8.596 5.869 6.868 3.435 6.776 8.577 7.871 4.218 nan 6.548 3.510 5.070 4.140 1.970 3.102 9.360 6.040 2.121 3.265 2.297 3.713 707 chr13 41632993 41637553 + 0 NA promoter-TSS (NM_007187) promoter-TSS (NM_007187) -424 NM_007187 11193 Hs.411300 NM_007187 ENSG00000120688 WBP4 FBP21 WW domain binding protein 4 protein-coding 6.332 4.403 6.543 5.435 4.348 1.935 1.556 3.951 0.351 2.357 1.325 7.021 13.597 6.749 0.202 12.002 14.820 5.311 8.037 13.445 10.659 11.072 5.181 8.511 9.337 6.599 8.016 4.216 6.926 8.968 10.197 6.215 12.831 5.300 4.848 10.773 10.744 2.691 1.807 4.445 6.029 0.876 3.723 1.556 7.021 0.638 1.712 4.921 3.432 1339 chr19 46270325 46287514 + 0 NA intron (NM_001081560, intron 8 of 14) AluSz|SINE|Alu 3958 NM_001288765 1760 Hs.631596 NM_004409 ENSG00000104936 DMPK DM|DM1|DM1PK|DMK|MDPK|MT-PK dystrophia myotonica protein kinase protein-coding 1.938 1.032 4.386 3.139 2.265 1.137 0.768 1.323 0.226 2.257 0.849 3.583 2.818 2.626 0.123 0.661 1.059 1.138 1.658 5.625 5.662 3.570 0.723 3.999 4.030 1.270 1.991 5.362 5.247 0.918 0.900 0.439 0.727 1.660 1.614 1.022 1.705 2.442 1.266 3.268 2.766 0.353 0.542 0.768 3.583 0.308 1.816 0.212 0.360 2137 chr6 44663650 44684171 + 0 NA Intergenic Intergenic -154292 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 1.328 0.889 1.103 0.133 0.185 0.093 0.274 0.170 0.070 0.076 0.090 0.093 0.321 0.042 0.126 0.448 0.303 0.283 0.532 0.301 0.412 0.121 0.098 0.245 0.324 0.134 0.268 0.313 nan 0.595 0.398 0.216 0.322 0.102 0.103 1.517 5.141 0.458 0.533 0.149 0.134 0.023 0.089 0.274 0.093 0.039 0.091 2.092 905 chr15 96864329 96907900 + 0 NA Intergenic Intergenic 9545 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP1|CHTD4|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding nan nan nan 0.568 0.801 0.395 1.250 1.058 0.133 0.953 0.720 2.326 2.704 1.151 0.071 1.412 1.556 5.140 6.193 2.190 1.973 nan 0.067 1.538 1.585 1.312 1.793 0.877 1.076 nan 2.822 1.307 2.710 0.517 0.403 1.302 nan 1.049 0.657 0.329 1.512 0.138 1.104 1.250 2.326 0.197 0.399 0.739 0.236 2285 chr7 94273493 94288742 + 0 NA intron (NM_001346720, intron 1 of 11) L3|LINE|CR1 4404 NM_001099401 8910 Hs.371199 NM_003919 ENSG00000127990 SGCE DYT11|ESG|epsilon-SG sarcoglycan epsilon protein-coding nan 1.272 nan 1.114 1.768 0.844 1.016 1.199 0.102 1.627 1.013 3.096 2.035 1.984 0.194 0.740 0.791 0.985 1.484 6.161 6.705 2.503 1.137 2.039 2.069 5.125 6.531 1.142 1.963 6.572 7.064 0.541 1.123 1.826 1.414 1.033 nan 5.073 3.029 0.635 1.204 0.457 0.402 1.016 3.096 0.401 1.089 0.233 0.275 765 chr14 29119878 29132902 + 0 NA Intergenic Intergenic 108135 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 (head to head) ncRNA 0.943 0.919 0.932 0.960 0.270 0.228 0.609 0.120 0.099 0.168 0.109 0.377 0.758 0.041 0.141 0.192 0.141 0.258 0.353 0.441 0.590 11.309 5.295 0.243 0.226 0.445 0.522 0.691 0.795 0.702 0.317 0.115 0.117 2.292 2.701 0.195 0.222 0.437 0.506 0.074 0.403 0.411 0.091 0.609 0.377 0.022 0.078 0.015 0.029 302 chr1 228269155 228272209 + 0 NA promoter-TSS (NM_001024228) promoter-TSS (NM_001024228) -169 NM_001024228 375 Hs.286221 NM_001658 ENSG00000143761 ARF1 - ADP ribosylation factor 1 protein-coding 9.079 7.140 10.770 8.423 10.572 5.587 8.500 5.355 0.786 7.239 2.262 7.459 11.731 5.266 0.146 8.000 7.962 14.761 21.572 13.159 12.060 10.631 6.026 26.119 27.140 5.003 6.358 7.742 14.170 9.336 11.143 3.506 7.505 7.826 10.820 12.774 9.966 3.606 2.290 4.742 5.864 1.245 5.317 8.500 7.459 1.301 3.865 1.246 3.250 878 chr15 66109958 66130744 + 0 NA Intergenic AluJb|SINE|Alu -35720 NM_005848 10260 Hs.654567 NM_005848 ENSG00000174485 DENND4A IRLB|MYCPBP DENN domain containing 4A protein-coding 1.175 1.490 nan 1.141 1.907 1.003 0.296 0.883 0.147 0.378 0.192 2.097 1.070 0.073 0.077 0.455 0.423 0.430 0.840 2.039 1.934 nan 2.750 0.185 0.216 0.316 0.617 2.963 3.823 1.849 1.336 0.485 0.562 1.021 1.820 0.437 0.935 1.728 0.835 0.176 0.146 0.279 0.244 0.296 2.097 0.079 3.742 0.271 0.143 2477 chr9 4289361 4301097 + 0 NA intron (NM_001042413, intron 1 of 10) intron (NM_001042413, intron 1 of 10) 4806 NM_001042413 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 1.255 4.805 0.998 0.387 0.623 0.259 0.676 2.726 0.289 0.411 0.290 0.501 1.544 1.433 0.112 0.327 0.151 5.737 12.207 0.909 0.600 0.340 0.092 0.859 1.048 1.461 2.104 0.686 1.117 0.406 0.314 0.355 0.598 0.415 0.464 0.052 nan 1.153 1.123 0.260 0.136 0.048 0.122 0.676 0.501 0.092 2.300 0.236 0.031 598 chr12 32019861 32032088 + 0 NA Intergenic LTR1B|LTR|ERV1 14163 NR_135029 105369723 Hs.736954 NR_135029 ENSG00000255760 LOC105369723 - uncharacterized LOC105369723 ncRNA 1.566 nan 1.368 0.617 0.230 0.211 0.726 0.099 0.066 0.332 0.225 0.488 0.599 0.071 0.121 0.392 0.277 0.239 0.469 0.539 0.623 1.280 0.157 0.440 0.469 0.489 0.847 0.344 0.304 0.627 0.506 0.175 0.408 8.246 8.992 0.222 0.426 1.513 0.734 0.109 0.276 1.207 0.404 0.726 0.488 0.183 0.232 0.201 0.112 335 chr10 3505334 3551109 + 0 NA intron (NR_131187, intron 1 of 1) intron (NR_131187, intron 1 of 1) 167334 NR_131187 105376360 Hs.212226 NR_131187 LOC105376360 - uncharacterized LOC105376360 ncRNA 0.375 1.014 0.599 0.156 0.505 0.270 0.870 2.684 0.347 0.134 0.072 0.298 0.420 6.356 0.198 0.764 0.861 1.660 4.843 0.246 0.366 2.260 1.461 0.155 0.181 0.113 0.193 0.413 0.666 0.124 0.056 0.168 0.237 0.227 0.462 0.135 0.198 0.460 0.408 0.012 0.107 0.048 0.031 0.870 0.298 0.030 0.031 0.041 0.038 100 chr1 41155844 41160158 + 0 NA promoter-TSS (NR_024567) promoter-TSS (NR_024567) -68 NR_024567 100130557 Hs.233458 NR_024567 NFYC-AS1 0808y08y NFYC antisense RNA 1 ncRNA 27.539 3.527 nan 3.499 4.758 2.417 4.158 2.540 0.333 2.531 1.416 7.409 10.069 4.285 0.245 5.834 5.292 6.923 10.031 9.270 9.306 4.703 3.236 11.652 12.781 6.190 nan 10.707 14.443 8.546 7.988 9.434 nan 3.758 3.876 7.135 6.616 3.300 1.413 4.005 3.368 0.728 3.695 4.158 7.409 1.354 1.883 3.834 2.235 2393 chr8 95903804 95913691 + 0 NA Intergenic CpG-25869 -1265 NM_057749 9134 Hs.521693 NM_004702 ENSG00000175305 CCNE2 CYCE2 cyclin E2 protein-coding nan 3.030 4.505 6.443 5.950 2.953 2.351 1.848 0.264 1.313 0.600 5.499 14.751 1.161 0.079 3.659 3.336 3.769 nan 8.751 8.199 4.463 2.988 3.379 3.673 3.570 4.671 11.022 14.948 4.977 5.203 1.861 3.685 5.641 6.650 3.550 3.096 3.114 1.635 5.321 5.324 1.676 2.982 2.351 5.499 0.436 2.439 1.294 1.189 2192 chr6 156598840 156604840 + 0 NA Intergenic Intergenic 333909 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA nan 0.709 0.936 6.081 0.497 0.203 0.761 0.349 0.096 0.993 0.663 1.971 1.843 0.018 0.136 2.806 4.192 0.248 0.318 4.382 nan 11.890 7.880 0.166 0.272 0.198 0.200 4.533 5.324 1.210 0.818 0.250 0.661 2.723 3.394 0.864 nan 0.915 0.569 1.900 2.147 0.943 0.265 0.761 1.971 0.098 0.905 0.988 0.591 1124 chr17 76960521 76984238 + 0 NA intron (NM_005567, intron 2 of 5) intron (NM_005567, intron 2 of 5) 3682 NM_005567 3959 Hs.514535 NM_005567 ENSG00000108679 LGALS3BP 90K|BTBD17B|CyCAP|M2BP|MAC-2-BP|TANGO10B|gp90 galectin 3 binding protein protein-coding 2.002 2.157 2.451 1.495 1.714 0.945 1.152 1.193 0.386 1.141 0.671 1.009 2.794 0.182 0.098 1.803 2.690 0.821 1.332 2.409 2.544 3.653 0.934 0.606 0.603 nan 1.368 3.661 4.160 2.614 2.983 1.057 1.781 1.198 1.505 0.492 0.868 nan 0.758 0.942 2.535 0.257 0.718 1.152 1.009 0.367 1.556 0.682 0.109 113 chr1 49380983 49405745 + 0 NA intron (NM_001323573, intron 5 of 12) intron (NM_001323573, intron 5 of 12) -150723 NM_001302082 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding nan 0.969 nan 0.265 0.315 0.231 0.356 0.081 0.136 0.186 0.192 0.149 0.464 0.077 0.084 0.477 0.360 0.292 0.372 0.609 0.717 0.295 0.100 0.239 0.331 1.141 nan nan 0.509 0.639 0.566 0.132 nan 0.088 0.132 1.361 4.099 0.743 0.545 0.075 0.109 0.015 0.557 0.356 0.149 0.219 0.102 0.044 0.866 2531 chr9 114243300 114247529 + 0 NA intron (NM_001080398, intron 3 of 50) CpG 1611 NM_001080398 23392 Hs.368255 NM_001080398 ENSG00000136813 KIAA0368 ECM29 KIAA0368 protein-coding 5.527 3.678 nan 8.881 5.117 3.054 5.848 2.709 0.226 2.673 1.307 8.357 10.759 3.734 0.095 2.770 2.842 7.127 9.992 11.098 9.253 4.104 1.788 20.721 19.953 2.441 3.138 10.837 20.093 16.827 20.876 1.839 5.258 6.906 5.062 9.830 5.900 nan 2.708 4.585 3.960 1.109 2.594 5.848 8.357 1.488 4.971 1.232 2.494 296 chr1 224031578 224035164 + 0 NA exon (NM_001031685, exon 1 of 18) exon (NM_001031685, exon 1 of 18) 303 NM_001031685 7159 Hs.523968 NM_005426 ENSG00000143514 TP53BP2 53BP2|ASPP2|BBP|P53BP2|PPP1R13A tumor protein p53 binding protein 2 protein-coding 10.099 7.357 9.405 10.795 6.487 3.627 7.650 5.056 0.615 4.775 1.967 6.276 15.582 4.399 0.178 11.073 9.256 14.337 21.402 15.570 nan 8.967 4.215 26.259 26.870 5.110 6.435 10.615 18.196 7.230 7.634 2.915 5.477 8.182 7.117 10.787 8.066 4.247 2.893 5.516 2.647 1.070 3.362 7.650 6.276 1.522 2.872 0.913 2.966 1827 chr3 158478390 158495641 + 0 NA Intergenic Intergenic -32700 NM_022736 64747 Hs.58663 NM_022736 ENSG00000118855 MFSD1 SMAP4 major facilitator superfamily domain containing 1 protein-coding nan 0.879 0.809 0.134 0.375 0.093 0.142 0.230 0.158 0.211 0.178 0.132 0.161 0.069 0.087 0.405 0.541 0.894 5.767 0.397 0.548 0.514 0.254 0.322 0.280 0.504 nan 0.687 0.618 0.595 0.343 0.272 0.447 0.032 0.047 0.326 0.510 0.578 0.511 0.061 0.070 0.010 0.105 0.142 0.132 0.050 0.035 0.109 0.106 1153 chr18 9904682 9917064 + 0 NA Intergenic Intergenic -3082 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 2.420 2.082 2.126 1.965 1.391 0.519 0.769 1.352 0.171 0.710 0.489 2.061 nan 1.683 0.161 1.778 2.447 2.037 3.389 3.526 2.792 nan 1.635 4.216 3.914 0.944 nan 1.445 2.291 nan 2.164 0.696 1.621 4.258 5.701 1.495 nan nan 1.098 0.978 1.749 1.300 1.301 0.769 2.061 0.559 0.787 0.409 0.766 1115 chr17 73868857 73875411 + 0 NA exon (NM_033452, exon 4 of 6) exon (NM_033452, exon 4 of 6) 2522 NM_033452 91107 Hs.293660 NM_033452 ENSG00000132481 TRIM47 GOA|RNF100 tripartite motif containing 47 protein-coding 4.724 5.276 1.478 4.489 3.817 2.059 1.487 3.692 0.647 4.709 1.694 1.249 3.639 1.266 0.131 2.526 4.462 0.495 1.154 0.801 0.748 2.970 1.052 4.595 4.527 nan 1.536 6.239 8.782 1.194 0.995 0.616 0.713 3.545 2.963 0.641 1.001 nan 1.568 3.329 0.027 0.555 0.084 1.487 1.249 0.771 5.266 0.181 0.191 1828 chr3 160112744 160123706 + 0 NA promoter-TSS (NM_005496) promoter-TSS (NM_005496) -122 NM_005496 10051 Hs.58992 NM_005496 ENSG00000113810 SMC4 CAP-C|CAPC|SMC-4|SMC4L1 structural maintenance of chromosomes 4 protein-coding 6.120 4.960 2.842 5.161 5.669 3.337 1.884 5.296 0.431 3.421 1.863 3.487 6.181 1.928 0.105 3.503 3.661 6.278 9.390 7.463 7.498 7.157 5.314 5.892 5.796 5.091 6.222 nan 7.032 11.305 10.038 2.654 5.629 2.897 3.383 4.725 6.029 2.974 1.805 4.131 3.084 0.730 2.708 1.884 3.487 0.772 1.389 1.645 1.777 1995 chr5 76924334 76942350 + 0 NA intron (NM_032109, intron 1 of 2) CpG-20821 1180 NM_032109 23440 Hs.202247 NM_032109 ENSG00000171540 OTP - orthopedia homeobox protein-coding 1.386 nan 0.561 0.623 0.716 0.365 0.483 0.165 0.126 0.147 0.137 0.511 0.861 0.836 0.132 0.326 0.310 0.250 0.253 2.171 1.504 nan 0.603 0.379 0.427 0.278 nan 1.583 2.295 1.852 1.314 0.317 0.607 0.724 0.485 0.219 0.504 0.299 0.274 0.710 11.379 0.126 0.282 0.483 0.511 0.076 0.491 0.107 0.089 2412 chr8 109983660 109991947 + 0 NA Intergenic Intergenic -111850 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 0.996 nan nan 0.124 0.266 0.232 0.266 0.097 0.078 0.057 0.059 0.030 0.821 0.052 0.089 0.248 0.253 0.160 0.334 0.411 0.430 10.281 3.275 0.665 0.549 0.410 nan 0.608 nan nan 0.358 0.089 0.206 0.326 0.328 0.595 nan 0.391 0.464 0.054 0.164 0.046 0.266 0.030 0.012 0.012 0.024 0.119 319 chr1 245910699 245916209 + 0 NA intron (NM_001167740, intron 11 of 11) L2|LINE|L2 595167 NM_018012 55083 Hs.143134 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding nan 1.125 nan 0.187 0.390 0.331 0.418 0.455 0.174 0.177 0.164 0.180 0.376 0.100 0.097 1.218 0.674 12.028 2.219 0.731 0.693 0.569 0.255 3.643 3.078 0.351 0.573 0.408 0.443 0.367 0.236 0.304 0.455 0.073 0.182 0.438 0.765 0.467 0.351 0.082 0.226 0.018 0.048 0.418 0.180 0.052 0.037 0.252 0.223 869 chr15 60281213 60301541 + 0 NA Intergenic Intergenic -5044 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 0.674 1.291 nan 1.676 0.494 0.292 1.938 0.089 0.110 0.185 0.114 0.082 9.329 0.080 0.079 0.244 0.127 0.172 0.304 0.653 0.604 nan 0.775 0.078 0.097 0.175 0.311 2.496 5.404 0.649 0.326 0.147 0.166 1.335 1.857 0.212 0.397 1.334 0.770 4.587 0.875 0.278 0.047 1.938 0.082 0.028 0.181 0.014 0.012 1240 chr18 77327174 77340989 + 0 NA Intergenic Intergenic 105664 NR_136643 284241 NR_136643 ENSG00000178412 LOC284241 - uncharacterized LOC284241 ncRNA nan nan 0.824 0.096 0.269 0.156 3.557 0.065 0.035 0.159 0.048 0.383 2.506 0.039 0.072 0.386 0.475 0.405 0.598 1.812 nan 1.233 0.367 0.227 0.254 0.128 0.231 0.106 nan 0.582 0.703 0.183 0.149 0.323 0.304 0.063 0.083 0.701 0.543 5.546 0.045 0.014 0.072 3.557 0.383 0.367 0.956 0.043 0.049 1258 chr19 10340726 10353966 + 0 NA Intergenic Intergenic -5398 NM_004230 9294 Hs.655405 NM_004230 ENSG00000267534 S1PR2 AGR16|DFNB68|EDG-5|EDG5|Gpcr13|H218|LPB2|S1P2 sphingosine-1-phosphate receptor 2 protein-coding 1.523 2.268 1.775 0.888 4.190 2.214 0.523 0.390 0.291 0.871 0.475 2.131 3.029 0.802 0.068 1.332 1.831 0.712 1.117 3.209 2.791 3.989 1.368 1.465 1.565 1.336 1.673 2.186 3.759 0.645 0.447 0.907 1.279 1.243 1.165 0.884 1.624 3.448 1.432 0.866 1.143 0.202 0.179 0.523 2.131 0.521 1.674 0.882 0.357 185 chr1 153852218 153855840 + 0 NA intron (NM_020699, intron 1 of 10) intron (NM_020699, intron 1 of 10) 41422 NM_020699 57459 Hs.4779 NM_020699 ENSG00000143614 GATAD2B MRD18|P66beta|p68 GATA zinc finger domain containing 2B protein-coding nan nan 2.392 2.845 5.720 3.542 4.789 1.426 0.358 2.388 1.434 3.971 20.195 0.120 0.189 6.706 5.624 6.352 7.447 16.240 nan 9.118 2.372 0.808 0.811 4.989 5.382 6.710 8.954 6.140 6.505 3.397 5.633 4.433 7.111 2.845 3.544 3.506 2.069 5.192 5.831 0.373 1.647 4.789 3.971 1.204 3.534 3.441 0.375 773 chr14 35007111 35031719 + 0 NA Intergenic AluSx|SINE|Alu -10472 NM_001318916 55837 Hs.433269 NM_018453 ENSG00000129518 EAPP BM036|C14orf11 E2F associated phosphoprotein protein-coding 3.949 2.198 2.282 3.011 2.027 0.989 2.440 2.572 0.794 0.745 0.567 2.130 6.316 1.625 0.140 2.525 2.691 2.784 4.311 4.846 4.889 3.069 2.906 7.720 8.413 2.609 2.882 3.224 4.723 5.328 5.081 3.066 3.782 2.374 2.833 2.407 2.454 1.985 1.066 3.245 3.912 0.866 2.355 2.440 2.130 0.808 1.570 1.162 0.619 2108 chr6 32142810 32147459 + 0 NA intron (NM_032741, intron 1 of 6).3 intron (NM_032741, intron 1 of 6).3 754 NM_032741 10554 Hs.409230 NM_006411 ENSG00000204310 AGPAT1 1-AGPAT1|G15|LPAAT-alpha|LPAATA 1-acylglycerol-3-phosphate O-acyltransferase 1 protein-coding nan 3.715 nan 8.840 4.645 2.820 9.355 4.599 0.314 2.721 1.224 9.001 17.423 6.106 0.254 6.489 8.679 6.202 nan 13.758 11.786 11.926 4.924 14.151 14.378 6.112 6.708 13.785 17.962 10.025 7.315 3.180 5.381 8.682 8.159 6.672 12.843 4.750 2.131 7.156 5.448 1.521 3.813 9.355 9.001 2.567 4.146 3.685 3.547 2392 chr8 95446279 95451505 + 0 NA exon (NM_001256141, exon 1 of 2) exon (NM_001256141, exon 1 of 2) 288 NM_001205263 25788 Hs.30561 NM_006550 ENSG00000197275 RAD54B RDH54 RAD54 homolog B (S. cerevisiae) protein-coding 2.848 1.265 1.676 0.375 2.410 1.252 1.370 1.567 0.186 0.714 0.367 2.373 0.605 0.510 0.077 1.955 2.478 9.643 11.251 0.910 0.980 2.924 1.280 1.526 1.452 2.357 2.137 1.085 0.848 3.058 2.133 1.786 4.424 0.715 1.130 3.874 8.239 0.991 0.649 0.086 0.224 0.169 0.198 1.370 2.373 0.074 0.503 1.978 2.420 2165 chr6 111794904 111807923 + 0 NA intron (NM_001286432, intron 2 of 33) intron (NM_001286432, intron 2 of 33) -3262 NR_034111 643749 Hs.486228 NR_034108 ENSG00000231889 TRAF3IP2-AS1 C6UAS|C6orf3|NCRNA00248|TRAF3IP2-AS2 TRAF3IP2 antisense RNA 1 ncRNA nan 3.715 nan 4.987 5.496 2.822 4.801 2.355 0.222 1.939 1.010 5.659 14.572 3.385 0.136 4.751 5.479 4.268 7.462 11.359 nan nan 3.192 10.039 10.508 2.735 nan 2.129 4.101 6.474 6.816 3.479 6.214 3.903 4.231 5.922 nan 2.181 1.044 4.972 5.821 1.007 2.098 4.801 5.659 1.257 2.094 2.422 1.820 1936 chr5 1237144 1259435 + 0 NA Intergenic Intergenic 22819 NM_182632 348932 Hs.213284 NM_182632 ENSG00000164363 SLC6A18 Xtrp2 solute carrier family 6 member 18 protein-coding 0.469 0.773 1.116 0.243 0.413 0.267 0.322 0.124 0.108 0.310 0.137 0.683 0.634 0.097 0.095 3.275 4.412 0.090 nan 1.614 1.324 1.540 0.538 0.062 0.059 0.209 0.508 nan 0.969 nan 0.542 0.516 0.659 0.303 0.296 0.133 0.124 1.580 nan 0.366 1.903 0.029 0.079 0.322 0.683 0.157 0.198 0.244 0.033 87 chr1 36688292 36692649 + 0 NA intron (NM_005119, intron 1 of 11) intron (NM_005119, intron 1 of 11) 453 NM_005119 9967 Hs.744057 NM_005119 ENSG00000054118 THRAP3 TRAP150 thyroid hormone receptor associated protein 3 protein-coding 5.337 nan 4.100 7.940 3.686 1.905 2.507 4.137 0.554 2.586 1.186 5.737 9.171 5.371 0.121 3.488 2.894 6.728 9.272 9.141 7.939 nan 2.613 11.718 12.902 4.933 5.883 11.099 17.923 nan 4.229 4.118 6.545 2.188 3.096 5.811 5.402 2.779 nan 3.069 2.169 0.418 1.878 2.507 5.737 0.649 2.139 1.885 1.391 2377 chr8 73701453 73715169 + 0 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) 64031 NR_110656 101926908 Hs.680588 NR_110656 ENSG00000253726 LOC101926908 - uncharacterized LOC101926908 ncRNA 1.814 0.967 1.940 1.750 0.491 0.233 0.233 0.115 0.153 1.008 0.478 4.329 0.922 0.079 0.075 0.388 0.343 1.608 1.217 1.551 2.047 2.937 1.384 0.798 0.782 0.472 0.751 2.189 2.745 0.389 0.224 0.408 0.708 3.677 5.289 1.007 2.895 3.969 2.030 0.113 0.461 1.168 0.134 0.233 4.329 0.057 1.922 0.221 0.677 358 chr10 34916282 34929621 + 0 NA intron (NM_001184785, intron 2 of 24) intron (NM_001184785, intron 2 of 24) 181302 NM_001184790 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 0.742 0.858 0.900 0.086 2.170 1.125 0.362 0.967 0.243 0.498 0.185 0.799 0.412 0.164 0.087 1.088 0.740 2.623 nan 1.241 1.101 1.983 0.677 9.544 9.525 0.420 0.734 0.578 0.937 0.223 0.114 0.673 1.152 0.246 0.186 0.255 0.567 0.699 0.485 0.034 0.094 0.065 0.113 0.362 0.799 0.102 0.167 0.814 0.171 378 chr10 119300288 119306172 + 0 NA intron (NM_001165924, intron 1 of 1) CpG -1130 NR_144378 196047 Hs.312592 NR_002791 ENSG00000229847 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 0.630 nan 0.395 0.030 0.983 0.355 0.997 0.089 0.054 0.159 0.140 0.082 1.837 0.112 0.028 1.154 3.415 2.184 2.130 0.074 0.176 1.339 0.426 0.086 0.104 0.433 0.863 0.087 0.138 0.648 0.643 0.349 0.291 3.563 3.400 0.064 0.065 0.527 0.384 0.009 0.123 1.797 6.689 0.997 0.082 0.067 0.034 1162 chr18 22928889 22932723 + 0 NA intron (NM_001308225, intron 1 of 6) CpG 1408 NM_015461 25925 Hs.116935 NM_015461 ENSG00000198795 ZNF521 EHZF|Evi3 zinc finger protein 521 protein-coding 5.655 0.809 3.337 0.396 0.497 0.375 13.185 3.743 0.367 0.699 0.562 0.435 8.482 0.283 0.045 0.749 1.134 0.403 nan 13.269 9.794 1.069 0.374 1.011 1.271 2.207 3.050 1.185 2.299 3.333 5.410 0.537 1.323 3.778 2.004 0.915 1.266 3.439 2.615 4.595 4.119 0.866 0.021 13.185 0.435 1.503 0.426 0.102 2.747 162 chr1 115973442 115991575 + 0 NA Intergenic Intergenic -101651 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding nan 1.204 0.828 0.080 2.019 1.211 0.760 0.252 0.062 0.103 0.103 1.772 1.213 0.024 0.146 0.284 0.163 1.055 1.465 3.813 nan 1.183 0.389 0.639 0.652 0.208 0.336 0.582 0.678 0.417 0.170 0.362 0.424 0.044 0.087 0.229 0.279 2.872 1.486 1.638 1.075 0.057 0.760 1.772 0.149 0.463 0.175 0.185 352 chr10 25000604 25013664 + 0 NA intron (NM_020824, intron 2 of 25) intron (NM_020824, intron 2 of 25) 5463 NM_020824 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 1.853 1.983 2.867 0.881 1.853 0.967 0.744 4.394 0.535 0.577 0.342 2.143 3.559 1.501 0.097 2.913 4.518 1.869 2.643 2.092 1.799 3.714 2.064 2.002 1.836 2.826 3.300 1.083 1.804 2.019 2.185 1.521 3.978 0.990 0.941 3.709 5.682 0.967 0.593 1.042 1.332 0.138 4.070 0.744 2.143 0.268 0.862 1.564 3.342 1835 chr3 168331771 168355217 + 0 NA intron (NR_021485, intron 4 of 15) intron (NR_021485, intron 4 of 15) 73852 NR_030294 693136 NR_030294 ENSG00000207717 MIR551B MIRN551B|mir-551b microRNA 551b ncRNA 1.038 1.073 0.852 0.105 0.282 0.158 0.420 0.236 0.193 0.335 0.226 0.071 0.169 0.174 0.096 0.328 0.200 0.290 0.326 0.408 0.543 3.590 1.357 0.251 0.252 1.178 1.474 nan 0.379 nan 0.474 0.183 0.237 1.050 1.333 0.401 0.797 0.920 0.707 0.017 0.080 0.298 0.179 0.420 0.071 0.035 0.030 0.159 1900 chr4 74122269 74126497 + 0 NA exon (NM_015574, exon 1 of 34) exon (NM_015574, exon 1 of 34) 132 NM_015574 26057 Hs.601206 NM_015574 ENSG00000132466 ANKRD17 GTAR|MASK2|NY-BR-16 ankyrin repeat domain 17 protein-coding 6.080 3.036 3.951 7.525 6.041 3.027 4.543 3.835 0.380 1.579 0.923 5.930 8.481 4.239 0.151 8.282 9.449 9.202 12.403 8.688 7.177 10.031 5.468 23.944 24.379 3.968 4.951 13.530 19.641 11.642 13.120 3.126 6.260 4.557 5.266 7.640 6.568 2.958 1.588 2.910 6.317 0.945 3.734 4.543 5.930 0.900 3.968 1.243 1.896 1112 chr17 73054436 73058490 + 0 NA intron (NR_110834, intron 5 of 6) intron (NR_110834, intron 5 of 6) 13184 NM_015353 23510 Hs.514468 NM_015353 ENSG00000180901 KCTD2 - potassium channel tetramerization domain containing 2 protein-coding 1.884 1.153 1.500 0.215 0.651 0.394 0.189 0.245 0.277 0.345 0.345 0.138 0.505 0.144 0.126 0.797 0.908 0.387 0.606 0.718 0.866 0.340 0.154 0.495 0.502 nan 0.655 1.380 1.744 15.164 15.405 0.626 0.699 0.104 0.176 4.463 8.031 nan 0.346 0.855 0.215 0.024 0.126 0.189 0.138 0.264 0.673 0.388 2.931 2088 chr6 21100891 21118284 + 0 NA intron (NM_017774, intron 13 of 15) intron (NM_017774, intron 13 of 15) 402536 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 1.254 1.447 nan 1.491 1.781 0.866 0.548 0.534 0.120 0.675 0.607 1.984 nan 0.169 0.085 0.481 0.359 0.623 nan 0.741 1.203 nan 0.428 0.682 0.734 1.031 1.349 1.587 1.230 0.616 0.346 0.175 0.356 1.482 2.234 0.379 0.972 2.427 0.995 1.135 0.646 0.490 0.087 0.548 1.984 0.039 0.192 0.102 0.235 1570 chr20 3174539 3207561 + 0 NA intron (NM_001267623, intron 1 of 5) intron (NM_001267623, intron 1 of 5) 1044 NM_033453 3704 Hs.415299 NM_033453 ENSG00000125877 ITPA C20orf37|HLC14-06-P|ITPase|My049|NTPase|dJ794I6.3 inosine triphosphatase protein-coding 1.543 3.116 1.409 1.394 1.003 0.587 0.982 0.462 0.148 1.193 0.560 2.622 3.916 0.659 0.110 2.507 2.764 1.336 1.868 3.426 3.261 4.585 1.227 2.484 2.731 1.520 2.100 5.147 5.314 1.886 1.784 1.152 1.715 1.654 1.847 1.005 1.773 1.680 0.685 1.301 1.610 0.373 0.529 0.982 2.622 0.590 1.432 0.402 0.485 1978 chr5 56863392 56868521 + 0 NA promoter-TSS (NR_120607) promoter-TSS (NR_120607) -213 NR_120607 100996645 Hs.582496 NR_120607 LINCR-0003 - uncharacterized LincR-0003 ncRNA nan nan 0.655 0.035 0.158 0.125 0.051 0.162 0.157 0.007 0.094 0.023 0.245 0.227 0.110 0.562 0.644 10.078 9.376 0.187 0.178 nan 0.111 0.124 0.226 0.476 0.698 0.112 0.141 nan 0.190 0.092 0.116 0.065 0.074 0.202 0.305 0.737 0.520 0.011 0.085 0.074 0.078 0.051 0.023 0.038 0.020 0.019 0.024 930 chr16 3193491 3246115 + 0 NA Intergenic AluSx|SINE|Alu 25511 NR_132322 197350 Hs.434132 NR_132322 ENSG00000228146 CASP16P CASP16 caspase 16, pseudogene pseudo 0.898 nan 0.893 0.681 0.612 0.354 0.264 0.220 0.110 0.236 0.183 0.227 2.421 0.545 0.090 0.375 0.393 0.237 0.372 0.485 0.449 nan 0.734 0.648 0.742 0.336 nan 0.537 0.613 1.362 1.265 0.282 0.404 0.899 0.821 0.488 1.158 0.699 0.427 0.235 0.558 0.113 0.089 0.264 0.227 0.192 0.377 0.111 0.196 2179 chr6 134286859 134305447 + 0 NA intron (NM_004865, intron 1 of 6) L1M5|LINE|L1 21852 NM_004865 9519 Hs.486507 NM_004865 ENSG00000028839 TBPL1 MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2 TATA-box binding protein like 1 protein-coding 1.143 0.918 1.527 0.408 0.349 0.112 0.358 0.537 0.069 0.093 0.092 0.277 0.549 0.257 0.109 1.818 1.460 5.372 3.515 0.971 1.025 nan 0.493 0.339 0.350 2.818 3.050 0.386 0.344 2.248 2.045 0.300 0.739 0.907 1.261 0.723 nan 0.596 0.456 0.045 0.347 0.133 0.116 0.358 0.277 0.109 0.108 0.271 0.416 2435 chr8 140882901 140895329 + 0 NA intron (NM_031466, intron 21 of 22) intron (NM_031466, intron 21 of 22) -173816 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 1.758 1.025 nan 0.755 0.437 0.271 0.289 0.079 0.110 0.101 0.041 0.835 2.838 0.017 0.065 0.278 0.307 0.153 0.238 nan 1.241 nan 0.556 0.381 0.372 0.569 0.850 2.344 1.912 0.331 0.358 0.276 0.431 0.131 0.156 0.188 0.259 0.759 0.649 6.322 1.136 0.031 0.071 0.289 0.835 0.172 4.530 0.048 0.100 1444 chr2 66758934 66789978 + 0 NA intron (NM_002398, intron 8 of 12) intron (NM_002398, intron 8 of 12) -26706 NR_110156 100507073 Hs.667940 NR_110156 ENSG00000232046 LINC01798 - long intergenic non-protein coding RNA 1798 ncRNA 1.065 0.755 nan 0.150 3.422 1.668 1.196 0.216 0.103 0.448 0.308 0.570 0.895 0.063 0.118 0.412 0.330 0.518 0.625 0.440 0.596 nan 0.965 0.350 0.344 0.433 0.626 0.538 0.620 0.500 0.218 0.228 0.443 0.914 1.086 0.524 1.326 0.982 0.498 0.066 0.138 0.260 0.079 1.196 0.570 0.032 0.592 0.143 0.323 679 chr12 123847401 123851691 + 0 NA promoter-TSS (NR_107039) promoter-TSS (NR_107039) -156 NR_107039 102466877 NR_107039 ENSG00000139697 MIR8072 hsa-mir-8072 microRNA 8072 ncRNA 4.664 2.938 2.793 4.111 4.110 2.370 3.151 2.909 0.342 2.546 1.250 3.509 8.304 6.085 0.265 4.569 5.427 5.689 9.072 6.408 6.074 nan 4.005 15.370 15.796 4.465 5.630 9.813 17.843 5.369 6.088 2.902 5.713 5.328 7.204 7.638 7.554 3.770 1.943 2.768 5.096 1.254 2.012 3.151 3.509 0.998 2.959 1.724 2.386 20 chr1 7305508 7345852 + 0 NA intron (NM_015215, intron 5 of 22) MER33|DNA|hAT-Charlie 480296 NM_001195563 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 0.955 nan 1.135 3.883 0.983 0.410 1.659 0.141 0.118 0.294 0.203 0.616 4.126 0.048 0.115 0.284 0.269 0.121 0.156 1.208 1.260 2.811 1.182 0.175 0.147 0.181 nan nan 6.405 nan 0.200 0.405 0.569 1.099 1.127 0.278 0.458 1.589 0.871 0.788 0.604 0.214 0.228 1.659 0.616 0.207 0.795 0.343 0.059 86 chr1 36598606 36627828 + 0 NA intron (NM_001270895, intron 1 of 4) AluJb|SINE|Alu 1898 NM_014408 27095 Hs.523131 NM_014408 ENSG00000054116 TRAPPC3 BET3 trafficking protein particle complex 3 protein-coding 3.306 nan 2.427 2.741 1.765 0.878 1.984 2.269 0.314 1.539 0.732 3.513 3.497 2.555 0.121 1.441 1.851 1.876 3.041 3.694 3.527 nan 0.865 2.919 2.947 3.236 4.834 4.796 7.722 nan 3.171 1.959 3.150 1.189 1.171 1.510 2.137 2.174 nan 2.001 1.536 0.297 0.771 1.984 3.513 0.783 1.018 1.066 0.699 481 chr11 67387176 67399892 + 0 NA Intergenic HERV9-int|LTR|ERV1 3874 NM_001243750 254552 Hs.433329 NM_181843 ENSG00000167799 NUDT8 - nudix hydrolase 8 protein-coding nan 1.103 1.060 0.855 0.521 0.366 0.465 0.176 0.179 0.222 0.062 0.339 2.540 0.492 0.112 1.202 1.521 1.524 2.141 1.716 1.330 1.688 0.534 1.564 1.654 0.402 0.797 2.029 2.813 0.604 0.587 1.251 1.870 0.304 0.292 0.565 0.806 0.467 0.366 0.333 0.698 0.060 0.100 0.465 0.339 0.130 3.304 0.898 0.116 2173 chr6 126049464 126074767 + 0 NA Intergenic Intergenic -8617 NM_012259 23493 Hs.144287 NM_012259 ENSG00000135547 HEY2 CHF1|GRIDLOCK|GRL|HERP1|HESR2|HRT2|bHLHb32 hes related family bHLH transcription factor with YRPW motif 2 protein-coding 1.425 1.422 1.265 0.936 0.342 0.164 0.637 1.775 0.152 0.217 0.122 0.360 2.097 0.167 0.113 0.348 0.197 0.313 0.641 0.681 0.583 3.684 1.285 0.476 0.536 0.523 0.794 0.909 0.948 7.520 8.162 0.100 0.146 6.402 6.842 1.021 1.666 0.773 0.472 0.288 0.182 1.909 0.025 0.637 0.360 0.658 0.597 0.043 1.373 2320 chr7 137665627 137687922 + 0 NA intron (NM_194071, intron 1 of 11) intron (NM_194071, intron 1 of 11) 10073 NM_194071 64764 Hs.490273 NM_194071 ENSG00000182158 CREB3L2 BBF2H7 cAMP responsive element binding protein 3 like 2 protein-coding nan nan nan 0.192 0.554 0.206 0.395 0.879 0.167 1.125 0.505 0.102 1.234 0.379 0.109 1.298 2.108 0.839 1.263 0.704 0.593 nan 1.300 2.674 2.595 1.251 nan 1.287 1.418 nan 1.776 0.415 0.626 1.412 0.959 0.669 1.437 1.872 nan 0.575 3.141 0.205 0.464 0.395 0.102 0.208 1.014 0.094 0.398 831 chr14 96667668 96693622 + 0 NA intron (NM_000623, intron 1 of 2) intron (NM_000623, intron 1 of 2) 9510 NM_000623 624 Hs.654542 NM_000623 ENSG00000168398 BDKRB2 B2R|BK-2|BK2|BKR2|BRB2 bradykinin receptor B2 protein-coding 1.934 0.952 nan 0.550 0.445 0.242 0.389 0.801 0.150 0.298 0.102 0.349 1.445 0.063 0.080 0.247 0.254 0.167 0.358 1.087 0.926 0.926 0.318 0.769 0.773 0.407 0.709 1.141 1.322 3.631 4.583 0.338 0.408 0.976 1.181 0.131 0.279 nan 0.664 0.178 0.354 0.158 0.100 0.389 0.349 0.223 1.005 0.108 0.038 181 chr1 151680877 151694405 + 0 NA intron (NM_001172649, intron 1 of 11) intron (NM_001172649, intron 1 of 11) 1151 NM_001172648 11189 Hs.26047 NM_007185 ENSG00000159409 CELF3 BRUNOL1|CAGH4|ERDA4|ETR-1|TNRC4 CUGBP, Elav-like family member 3 protein-coding nan nan 1.499 0.485 0.642 0.383 4.075 0.213 0.107 0.716 0.416 1.155 4.421 0.101 0.123 1.007 1.441 0.196 0.309 4.046 nan 2.334 1.114 0.338 0.400 1.384 2.149 2.756 4.403 3.051 2.862 1.497 2.054 1.091 0.821 4.338 9.366 1.601 1.380 1.026 1.940 0.148 0.244 4.075 1.155 0.900 1.352 1.850 3.850 947 chr16 29826669 29838631 + 0 NA 3' UTR (NM_024516, exon 3 of 3) 3' UTR (NM_024516, exon 3 of 3) 935 NM_005115 9961 Hs.632177 NM_005115 ENSG00000013364 MVP LRP|VAULT1 major vault protein protein-coding 3.744 1.767 nan 2.361 2.653 1.369 1.835 1.124 0.269 0.641 0.466 2.125 6.703 1.582 0.110 1.771 2.210 1.419 2.126 3.054 2.561 nan 2.368 3.234 3.596 4.191 5.119 5.083 6.620 7.029 6.190 1.540 2.233 3.660 5.388 3.792 7.257 1.857 0.840 2.681 1.535 1.413 1.579 1.835 2.125 1.793 1.917 0.986 2.646 449 chr11 57433628 57441990 + 0 NA intron (NM_015457, intron 1 of 11) AluSx|SINE|Alu 2335 NM_015457 25921 Hs.27239 NM_015457 ENSG00000156599 ZDHHC5 DHHC5|ZNF375 zinc finger DHHC-type containing 5 protein-coding 2.546 2.576 1.815 3.516 3.422 1.570 1.822 1.654 0.165 1.360 0.707 2.646 6.696 2.994 0.190 5.374 5.950 5.483 7.196 5.411 5.859 4.777 3.181 8.927 9.556 3.366 3.784 5.214 7.200 4.395 4.383 4.727 6.717 3.663 4.506 2.939 3.604 2.286 1.331 2.247 2.231 0.683 1.053 1.822 2.646 1.070 1.093 1.430 0.931 2591 chrX 41189370 41195875 + 0 NA promoter-TSS (NR_126093) promoter-TSS (NR_126093) 61 NR_126093 1654 Hs.728563 NM_001356 ENSG00000215301 DDX3X CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102 DEAD-box helicase 3, X-linked protein-coding 5.470 5.762 nan 6.332 4.779 2.396 2.693 4.010 0.273 3.284 1.351 4.471 10.696 5.094 0.140 4.651 5.660 14.256 17.543 11.000 10.300 9.815 6.921 19.212 19.893 3.290 4.021 9.570 14.608 11.188 12.346 8.816 11.350 6.448 5.882 10.293 7.739 2.568 1.850 2.998 4.636 0.806 3.263 2.693 4.471 0.747 2.310 5.595 2.627 1957 chr5 33996450 34014271 + 0 NA intron (NM_001167595, intron 2 of 5) intron (NM_001167595, intron 2 of 5) 2860 NM_001167595 23600 Hs.508343 NM_014324 ENSG00000242110 AMACR AMACRD|CBAS4|P504S|RACE|RM alpha-methylacyl-CoA racemase protein-coding 1.744 2.794 nan 9.070 1.574 0.688 0.669 2.417 0.482 2.668 1.814 4.819 3.562 0.907 0.169 1.186 1.517 1.237 1.632 3.910 3.699 6.608 3.722 1.525 1.438 2.406 3.117 4.321 5.193 3.803 3.531 1.166 2.166 2.292 2.054 1.012 1.994 4.243 2.024 0.612 2.070 0.572 0.423 0.669 4.819 0.493 3.856 0.877 0.826 2481 chr9 14051507 14067509 + 0 NA Intergenic Intergenic 121293 NM_001282787 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding nan nan 0.934 0.248 0.532 0.323 0.400 0.136 0.080 0.177 0.152 1.100 1.592 0.034 0.068 0.249 0.085 0.391 0.732 1.546 1.864 0.463 0.294 0.104 0.090 5.571 6.993 0.730 1.256 0.476 0.336 0.208 0.312 0.248 0.233 0.190 0.428 1.148 0.866 7.513 0.239 0.149 0.084 0.400 1.100 0.043 0.082 0.104 0.061 1576 chr20 14199763 14204123 + 0 NA intron (NM_080676, intron 3 of 16) MIRb|SINE|MIR 116370 NM_013281 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 0.821 nan 0.892 0.588 0.278 0.110 0.352 0.173 0.172 0.155 0.057 0.268 0.611 0.069 2.061 2.540 12.118 9.833 0.347 0.520 4.409 0.936 22.610 24.308 0.528 0.678 2.185 2.078 0.769 0.408 1.519 3.029 1.848 3.271 0.723 2.343 0.480 0.465 0.025 0.170 0.198 0.145 0.352 0.268 0.288 0.210 1.895 0.148 252 chr1 183437071 183453288 + 0 NA intron (NM_001174061, intron 1 of 21) intron (NM_001174061, intron 1 of 21) 3673 NM_001174061 9887 Hs.591463 NM_014837 ENSG00000116698 SMG7 C1orf16|EST1C|SGA56M SMG7, nonsense mediated mRNA decay factor protein-coding nan nan 2.785 1.821 1.843 1.197 2.578 2.084 0.285 1.668 0.733 1.542 4.795 1.464 0.126 3.268 3.820 4.969 6.349 4.937 nan 3.380 1.942 nan 6.667 2.754 3.690 3.974 5.404 3.215 3.294 3.493 5.401 3.671 4.101 4.469 nan 1.851 1.294 1.045 3.463 0.848 1.112 2.578 1.542 0.911 1.032 2.048 1.344 1172 chr18 35011435 35033716 + 0 NA intron (NM_001025087, intron 2 of 12) intron (NM_001025087, intron 2 of 12) 23892 NR_132967 106635546 NR_132967 SNORA111 - small nucleolar RNA, H/ACA box 111 snoRNA nan 0.986 0.848 0.211 1.314 0.713 1.637 0.034 0.021 0.498 0.313 0.817 0.411 0.057 0.056 0.857 1.772 0.284 0.460 2.025 2.132 3.046 1.120 0.097 0.112 0.843 1.116 nan 1.257 0.912 0.983 0.257 0.364 1.902 1.375 0.462 0.684 3.551 2.303 0.649 0.242 0.655 0.309 1.637 0.817 0.481 0.136 0.125 0.182 191 chr1 154912581 154936884 + 0 NA intron (NM_020524, intron 2 of 10) intron (NM_020524, intron 2 of 10) 3907 NM_001317734 57326 Hs.505806 NM_020524 ENSG00000163346 PBXIP1 HPIP PBX homeobox interacting protein 1 protein-coding nan nan 2.495 0.948 1.427 0.726 2.109 0.811 0.172 0.806 0.430 1.490 4.449 1.319 0.088 4.166 6.038 3.785 4.223 3.594 nan 2.199 1.171 1.929 2.198 1.484 2.141 2.357 3.542 2.719 2.570 6.144 9.162 1.030 1.168 2.159 3.110 1.241 0.766 0.867 1.479 0.267 0.712 2.109 1.490 0.401 1.286 5.531 0.779 2293 chr7 102131216 102158295 + 0 NA intron (NM_001277335, intron 5 of 19) AluJr|SINE|Alu 13469 NM_001277335 100271927 Hs.530089 NM_001277335 ENSG00000170667 RASA4B - RAS p21 protein activator 4B protein-coding nan 1.488 3.258 0.750 1.519 0.814 2.843 0.421 0.219 0.869 0.609 1.014 2.128 0.745 0.195 1.383 2.457 0.974 1.421 2.465 2.138 1.919 0.582 1.843 2.137 0.477 0.937 2.796 3.339 1.944 1.870 0.714 0.865 1.083 0.924 1.822 nan 1.652 0.952 0.661 3.081 0.492 0.404 2.843 1.014 0.991 1.435 0.550 0.735 291 chr1 214278712 214285286 + 0 NA Intergenic AluSz|SINE|Alu 120155 NM_002763 5629 Hs.741808 NM_002763 ENSG00000117707 PROX1 - prospero homeobox 1 protein-coding 1.328 1.056 1.065 0.106 0.571 0.399 0.433 0.181 0.170 0.323 0.182 0.385 nan 0.065 0.126 1.444 2.025 8.101 4.658 0.643 0.712 nan 0.428 0.592 0.559 0.685 nan 0.761 0.650 0.343 0.198 0.647 0.639 0.143 0.161 0.402 1.211 1.240 0.860 0.068 0.013 0.015 0.690 0.433 0.385 0.031 0.092 0.111 0.354 270 chr1 203416047 203436749 + 0 NA Intergenic L2a|LINE|L2 -18485 NM_002725 5549 Hs.632481 NM_002725 ENSG00000188783 PRELP MST161|MSTP161|SLRR2A proline and arginine rich end leucine rich repeat protein protein-coding 1.483 1.074 1.438 0.195 0.566 0.326 0.892 0.148 0.155 0.697 0.324 0.541 1.084 0.042 0.109 0.566 0.740 0.407 0.711 0.695 0.799 3.702 1.255 nan nan 1.873 2.423 0.501 0.589 0.767 0.422 0.198 0.266 1.837 1.841 0.520 1.499 2.174 1.150 0.021 0.415 1.111 0.093 0.892 0.541 0.475 0.034 0.072 0.214 465 chr11 64083582 64092230 + 0 NA intron (NM_181651, intron 2 of 4) L2c|LINE|L2 2346 NM_012094 25824 Hs.502823 NM_012094 ENSG00000126432 PRDX5 ACR1|AOEB166|B166|HEL-S-55|PLP|PMP20|PRDX6|PRXV|SBBI10|prx-V peroxiredoxin 5 protein-coding nan 2.181 3.020 3.263 3.370 1.688 3.594 1.547 0.224 1.569 0.948 2.547 7.432 3.819 0.132 4.915 7.701 3.991 5.617 5.097 4.764 4.298 2.030 5.859 6.260 2.687 3.862 4.379 5.516 2.957 2.952 4.160 4.954 2.352 2.852 1.439 2.795 1.730 1.052 2.874 2.549 0.469 1.605 3.594 2.547 1.474 2.017 1.494 0.942 445 chr11 47426569 47431311 + 0 NA non-coding (NR_134854, exon 1 of 11) non-coding (NR_134854, exon 1 of 11) 113 NR_134854 91252 Hs.523664 NM_152264 ENSG00000165915 SLC39A13 LZT-Hs9 solute carrier family 39 member 13 protein-coding nan 2.724 2.496 2.285 2.500 1.317 2.216 1.668 0.250 1.573 1.007 2.662 5.576 2.787 0.121 6.168 7.634 11.203 9.333 5.478 5.083 5.879 2.257 5.728 6.116 2.669 3.969 1.432 2.381 2.554 2.894 2.600 5.651 2.954 2.588 1.777 nan 2.354 1.205 2.008 3.080 0.436 0.875 2.216 2.662 1.063 2.368 2.248 0.800 2243 chr7 26233538 26246345 + 0 NA promoter-TSS (NM_007276) promoter-TSS (NM_007276) 472 NM_031243 3181 Hs.487774 NM_002137 ENSG00000122566 HNRNPA2B1 HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|IBMPFD2|RNPA2|SNRPB1 heterogeneous nuclear ribonucleoprotein A2/B1 protein-coding 8.075 4.107 7.549 5.300 6.136 3.759 4.055 2.968 0.241 3.822 1.879 7.314 10.635 7.508 0.274 7.370 7.015 6.349 nan 11.056 9.337 7.145 3.929 12.136 12.466 5.216 6.432 7.153 9.822 7.782 9.572 3.042 7.790 9.344 8.498 9.068 8.128 3.077 1.560 4.454 4.564 2.020 3.817 4.055 7.314 1.300 3.197 2.724 3.492 1374 chr19 56090956 56099053 + 0 NA Intergenic AluSz|SINE|Alu -2793 NM_152600 163033 Hs.112529 NM_152600 ENSG00000218891 ZNF579 - zinc finger protein 579 protein-coding 3.219 2.073 3.748 2.293 7.126 3.695 2.876 0.795 0.039 1.257 0.731 4.330 4.741 5.750 0.170 3.524 4.992 1.620 2.083 5.335 5.328 8.078 2.016 0.890 0.877 2.122 2.839 3.815 5.006 4.981 3.813 1.885 3.260 2.839 2.431 3.422 5.749 2.963 1.415 1.631 3.556 0.694 1.351 2.876 4.330 1.230 1.979 1.672 2.123 715 chr13 69794278 69799129 + 0 NA intron (NR_125752, intron 1 of 3) HERV17-int|LTR|ERV1 225 NR_125752 103689913 Hs.585628 NR_125752 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA nan 0.693 0.539 3.618 0.331 0.178 0.246 0.126 0.066 0.064 0.085 0.271 0.191 0.063 0.047 0.485 0.340 0.436 0.227 0.278 0.323 18.656 8.637 0.172 0.191 0.103 0.241 0.183 0.226 nan 0.130 0.133 0.176 0.085 0.051 0.282 nan 0.179 0.152 0.011 1.395 0.129 0.246 0.271 0.082 0.020 0.083 0.051 168 chr1 145433042 145457775 + 0 NA intron (NM_001039703, intron 68 of 85) AluJb|SINE|Alu 6061 NM_001313972 10628 Hs.533977 NM_006472 ENSG00000265972 TXNIP ARRDC6|EST01027|HHCPA78|THIF|VDUP1 thioredoxin interacting protein protein-coding 2.393 nan 2.925 2.465 2.200 1.084 3.043 1.865 0.340 1.473 0.938 1.822 12.041 0.304 0.132 1.194 2.119 1.545 2.763 4.107 3.894 3.276 0.876 1.975 2.095 1.915 2.219 4.558 4.056 2.594 2.721 1.760 2.688 1.671 1.900 1.227 3.481 1.862 1.017 3.061 6.996 0.587 0.646 3.043 1.822 0.590 1.571 1.825 1.266 1045 chr17 30500376 30527723 + 0 NA intron (NR_110083, intron 8 of 20) AluSz6|SINE|Alu -35459 NR_002222 503640 Hs.631752 NR_002222 ARGFXP2 - arginine-fifty homeobox pseudogene 2 pseudo nan 1.201 1.012 0.144 0.381 0.153 0.079 0.202 0.156 0.091 0.081 0.065 0.358 0.166 0.249 0.355 0.354 0.222 0.315 nan 0.445 0.434 0.196 0.386 0.364 0.358 0.605 0.444 0.500 nan 0.993 0.169 0.221 0.159 0.214 1.825 6.048 0.500 0.310 0.106 0.139 0.038 0.181 0.079 0.065 0.043 0.041 0.058 2.526 2336 chr7 155246692 155266245 + 0 NA 3' UTR (NM_001427, exon 2 of 2) 3' UTR (NM_001427, exon 2 of 2) 5644 NM_001427 2020 Hs.134989 NM_001427 ENSG00000164778 EN2 - engrailed homeobox 2 protein-coding 0.462 0.454 nan 0.127 0.189 0.149 1.050 0.077 0.057 0.135 0.143 0.122 0.557 1.140 0.099 4.385 4.525 1.988 1.886 1.187 1.002 0.189 0.061 0.110 0.102 0.141 0.222 0.128 0.155 0.361 0.239 4.090 7.321 0.097 0.131 0.063 0.161 0.452 0.457 1.329 0.327 0.005 0.057 1.050 0.122 0.229 0.015 3.226 0.025 2342 chr8 20390336 20404142 + 0 NA Intergenic AluY|SINE|Alu 263955 NR_047509 100874051 Hs.385799 NR_047509 ENSG00000253733 LZTS1-AS1 - LZTS1 antisense RNA 1 ncRNA nan 1.415 nan 0.039 0.822 0.429 0.352 0.059 0.035 0.298 0.217 0.028 0.669 0.016 0.125 0.447 0.552 0.113 0.149 nan 1.285 nan 0.464 0.120 0.140 0.250 0.354 1.065 1.167 0.397 0.296 0.229 0.210 0.295 0.329 0.170 0.291 nan nan 1.555 0.136 0.048 0.080 0.352 0.028 0.169 0.043 0.090 21 chr1 7352741 7364750 + 0 NA intron (NM_015215, intron 5 of 22) intron (NM_015215, intron 5 of 22) -472584 NM_004781 9341 Hs.66708 NM_004781 ENSG00000049245 VAMP3 CEB vesicle associated membrane protein 3 protein-coding 1.003 nan 0.748 0.635 0.574 0.360 0.956 0.768 0.064 0.234 0.173 1.035 6.857 0.063 0.107 0.299 0.376 0.184 0.345 3.211 3.002 0.828 0.279 0.187 0.214 0.204 nan nan 1.827 nan 0.374 0.401 0.492 0.216 0.443 0.313 0.735 0.856 0.700 1.204 1.606 0.078 0.257 0.956 1.035 0.105 0.383 0.162 0.092 990 chr16 85960894 85982383 + 0 NA Intergenic MLT1L|LTR|ERVL-MaLR 19685 NR_106832 102466732 NR_106832 ENSG00000274134 MIR6774 hsa-mir-6774 microRNA 6774 ncRNA nan 0.542 0.619 0.074 0.154 0.082 0.118 0.070 0.037 0.014 0.021 0.051 0.206 0.045 0.062 0.171 0.107 0.067 0.114 0.139 0.228 0.108 0.048 0.112 0.177 0.084 0.194 0.151 0.170 0.372 0.194 0.070 0.108 0.049 0.038 0.049 0.186 0.229 0.340 4.210 0.042 0.022 0.022 0.118 0.051 0.265 0.019 0.009 0.023 1320 chr19 41902068 41905393 + 0 NA promoter-TSS (NM_001164783) promoter-TSS (NM_001164783) 36 NM_000709 593 Hs.433307 NM_000709 ENSG00000248098 BCKDHA BCKDE1A|MSU|MSUD1|OVD1A branched chain keto acid dehydrogenase E1, alpha polypeptide protein-coding 5.203 2.657 4.535 5.882 4.770 1.965 3.917 3.488 0.053 1.831 0.922 3.027 5.384 3.325 0.194 7.446 7.034 6.399 9.344 7.258 10.283 9.460 6.902 17.828 20.195 5.769 7.134 9.117 12.870 17.682 16.904 9.898 12.358 5.540 7.729 10.430 9.421 5.709 3.963 3.627 7.356 0.975 1.259 3.917 3.027 1.428 1.720 3.912 3.923 2339 chr8 11653675 11666754 + 0 NA promoter-TSS (NM_001287745) promoter-TSS (NM_001287745) 94 NM_004462 2222 Hs.593928 NM_004462 ENSG00000079459 FDFT1 DGPT|ERG9|SQS|SS farnesyl-diphosphate farnesyltransferase 1 protein-coding 1.693 1.959 nan 1.708 2.347 1.223 3.058 1.259 0.346 1.021 0.782 5.658 1.922 1.629 0.172 2.620 2.536 1.712 3.068 6.195 nan 3.414 2.286 5.492 5.502 1.786 2.418 2.056 3.705 3.228 2.700 1.254 2.846 1.789 1.536 2.510 4.171 2.928 1.390 3.064 2.789 0.723 0.556 3.058 5.658 0.461 1.393 1.489 2.034 809 chr14 69862413 69871028 + 0 NA intron (NM_018375, intron 1 of 6) AluJb|SINE|Alu 1335 NM_001252150 55334 Hs.432690 NM_018375 ENSG00000029364 SLC39A9 ZIP-9|ZIP9 solute carrier family 39 member 9 protein-coding 6.463 2.498 3.189 4.435 3.423 1.976 3.768 2.653 0.412 1.202 0.965 2.734 6.589 2.598 0.209 4.008 3.565 4.993 6.628 6.853 6.366 4.805 3.045 11.335 11.882 4.023 4.927 6.003 nan 9.903 9.393 4.220 6.569 4.726 6.406 4.739 3.730 3.582 nan 3.991 2.461 0.691 2.428 3.768 2.734 1.193 1.497 1.448 0.905 959 chr16 30885274 30894858 + 0 NA intron (NR_110942, intron 2 of 2) AluSg|SINE|Alu 3285 NR_110942 101928736 Hs.303197 NR_110940 ENSG00000260083 MIR762HG - MIR762 host gene ncRNA 3.742 1.695 3.264 3.279 2.634 1.520 2.168 0.759 0.221 0.885 0.303 3.221 7.128 1.889 0.096 3.347 3.007 3.246 4.082 4.003 3.731 7.332 2.357 5.006 5.469 2.305 3.374 6.088 8.629 3.667 4.165 2.069 2.956 3.289 3.581 2.036 2.593 2.499 1.360 2.117 1.466 0.615 0.894 2.168 3.221 0.873 1.932 0.774 0.782 1779 chr3 88658245 88678708 + 0 NA Intergenic Intergenic -469460 NM_001195308 8545 Hs.444818 NM_003663 ENSG00000163320 CGGBP1 CGGBP|p20-CGGBP CGG triplet repeat binding protein 1 protein-coding nan 0.634 0.843 0.039 0.097 0.024 0.482 0.025 0.016 0.023 0.117 0.058 0.154 0.031 0.061 0.141 0.123 0.259 0.453 0.262 0.275 0.156 0.083 0.117 0.112 5.895 5.534 0.125 0.111 0.587 0.388 0.089 0.106 0.029 0.057 0.363 0.649 0.328 0.253 0.003 0.056 0.005 0.012 0.482 0.058 0.010 0.029 0.005 0.036 1972 chr5 51105344 51110450 + 0 NA Intergenic Intergenic -428731 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA nan nan 0.787 0.070 0.315 0.222 0.200 0.087 0.062 0.080 0.175 0.187 0.412 0.127 0.053 0.382 0.258 8.448 5.773 0.395 0.630 nan 0.472 0.119 0.136 0.263 0.322 0.154 0.139 nan 0.370 0.101 0.078 0.228 0.498 0.169 0.174 0.295 0.389 0.152 0.088 0.018 2.565 0.200 0.187 0.037 0.080 0.020 0.024 427 chr11 33179201 33184991 + 0 NA intron (NM_001033506, intron 1 of 1) intron (NM_001033506, intron 1 of 1) 941 NM_001326 1479 Hs.44402 NM_001326 ENSG00000176102 CSTF3 CSTF-77 cleavage stimulation factor subunit 3 protein-coding 3.570 3.391 nan 3.443 4.090 1.992 2.546 1.375 0.247 2.435 1.328 2.771 7.356 4.863 0.299 6.941 5.950 6.298 8.425 6.681 5.565 7.994 4.245 12.984 12.922 7.712 8.619 4.584 8.562 6.712 5.848 5.476 7.838 5.990 7.878 4.889 nan 3.781 2.004 3.586 2.337 0.803 1.522 2.546 2.771 1.716 1.647 3.849 1.962 2459 chr8 145732236 145736158 + 0 NA promoter-TSS (NM_138431) promoter-TSS (NM_138431) -222 NR_130120 113655 Hs.7678 NM_138431 ENSG00000167700 MFSD3 - major facilitator superfamily domain containing 3 protein-coding 6.873 3.262 nan 9.012 7.815 4.190 3.479 1.356 0.168 1.555 0.906 9.328 8.661 1.998 0.053 6.717 7.548 4.326 6.719 nan 10.634 nan 2.651 11.903 12.900 2.466 3.212 6.508 8.576 5.523 7.238 9.987 12.589 6.739 5.448 6.089 6.518 4.441 2.046 6.528 7.553 1.445 3.330 3.479 9.328 1.665 4.850 3.948 2.200 2164 chr6 109773934 109793705 + 0 NA TTS (NM_014797) TTS (NM_014797) 3352 NM_001286613 64780 Hs.33476 NM_022765 ENSG00000135596 MICAL1 MICAL|MICAL-1|NICAL microtubule associated monooxygenase, calponin and LIM domain containing 1 protein-coding 2.149 nan nan 3.211 0.745 0.405 0.662 0.406 0.114 0.225 0.216 1.042 3.066 0.730 0.137 0.710 1.151 0.781 1.169 2.959 nan 1.739 0.523 0.667 0.718 0.784 1.074 1.402 1.569 nan 1.981 0.265 0.663 0.249 0.194 0.547 0.981 1.209 0.563 3.349 4.329 0.058 0.587 0.662 1.042 0.621 1.043 0.210 0.257 550 chr12 6711332 6728256 + 0 NA Intergenic AluSp|SINE|Alu -3195 NM_001273 1108 Hs.162233 NM_001273 ENSG00000111642 CHD4 CHD-4|Mi-2b|Mi2-BETA|SIHIWES chromodomain helicase DNA binding protein 4 protein-coding 3.019 nan nan 5.592 3.417 1.784 3.618 0.944 0.142 1.676 0.969 4.111 5.823 1.139 0.119 2.409 3.086 1.497 1.945 nan 6.627 6.820 2.314 3.873 3.893 2.568 3.385 4.946 5.034 5.323 4.589 2.012 3.299 2.306 2.041 2.675 nan 1.773 0.774 2.964 4.004 0.717 3.105 3.618 4.111 2.350 1.168 2.483 2.464 1768 chr3 49054512 49060580 + 0 NA promoter-TSS (NM_199074) promoter-TSS (NM_199074) 121 NR_029948 494337 NR_029948 ENSG00000199032 MIR425 MIRN425|hsa-mir-425|mir-425 microRNA 425 ncRNA 5.479 5.783 nan 5.659 3.743 2.379 2.191 2.074 0.370 2.030 1.241 4.258 14.319 5.110 0.166 4.293 4.805 5.903 9.255 8.438 7.215 8.113 3.130 10.081 9.898 2.410 3.413 6.623 9.482 5.477 6.558 4.980 8.079 6.048 5.391 4.948 3.983 2.699 1.721 5.418 6.186 1.807 3.677 2.191 4.258 0.947 5.011 3.776 1.753 1554 chr2 239142788 239168676 + 0 NA intron (NM_022817, intron 22 of 22) intron (NM_022817, intron 22 of 22) -6967 NM_001142853 55502 Hs.42949 NM_018645 ENSG00000144485 HES6 C-HAIRY1|HES-6|bHLHb41|bHLHc23 hes family bHLH transcription factor 6 protein-coding 2.381 nan 11.859 2.792 3.255 1.640 1.148 0.142 0.049 1.279 0.726 4.199 3.202 0.222 0.127 3.023 2.625 0.648 0.924 6.523 5.879 3.562 1.403 2.284 2.341 1.047 1.755 3.683 nan 4.080 5.122 2.250 3.204 1.616 1.406 2.495 5.272 1.128 0.629 2.530 1.830 0.562 1.885 1.148 4.199 0.375 1.280 1.442 1.525 2020 chr5 139013256 139091760 + 0 NA intron (NM_001317203, intron 2 of 3) intron (NM_001317203, intron 2 of 3) -2517 NM_001317208 51523 Hs.189119 NM_016463 ENSG00000171604 CXXC5 CF5|HSPC195|RINF|WID CXXC finger protein 5 protein-coding 2.112 1.041 nan 0.520 0.685 0.339 1.008 0.864 0.195 0.283 0.152 0.846 1.667 0.593 0.101 2.333 3.417 2.158 2.131 1.045 0.916 0.915 0.308 5.147 5.223 1.333 1.954 1.933 2.201 1.796 1.849 1.971 3.386 0.760 0.754 0.853 1.596 0.577 0.442 0.871 1.017 0.161 0.214 1.008 0.846 0.764 1.451 2.548 0.274 1278 chr19 18473137 18500139 + 0 NA Intergenic AluJr|SINE|Alu -10132 NM_004864 9518 Hs.616962 NM_004864 ENSG00000130513 GDF15 GDF-15|MIC-1|MIC1|NAG-1|PDF|PLAB|PTGFB growth differentiation factor 15 protein-coding 2.116 3.288 1.286 1.288 2.332 1.070 2.165 2.627 0.447 0.481 0.230 0.670 2.897 0.353 0.088 0.287 0.350 0.826 3.853 0.711 0.784 5.352 1.396 0.506 0.532 0.488 1.058 4.095 3.966 1.049 0.707 0.465 0.459 2.567 4.358 0.648 1.265 2.053 1.061 1.370 0.352 0.516 0.058 2.165 0.670 0.230 1.682 0.092 0.250 243 chr1 173223308 173249936 + 0 NA intron (NR_037845, intron 2 of 2) Charlie25|DNA|hAT-Charlie -60170 NM_003326 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 tumor necrosis factor superfamily member 4 protein-coding nan nan nan 0.122 0.166 0.111 0.222 0.520 0.133 0.099 0.146 0.032 0.310 0.064 0.115 0.586 0.572 6.653 5.089 nan 0.376 0.146 0.083 0.238 0.266 0.209 0.374 0.248 0.280 0.349 0.141 0.440 0.833 0.065 0.095 0.170 nan 0.220 0.347 0.017 0.056 0.018 0.033 0.222 0.032 0.046 0.327 0.079 377 chr10 115837677 115843646 + 0 NA Intergenic L1MC4a|LINE|L1 36855 NM_000684 153 Hs.99913 NM_000684 ENSG00000043591 ADRB1 ADRB1R|B1AR|BETA1AR|RHR adrenoceptor beta 1 protein-coding 0.467 nan 0.548 0.125 0.385 0.321 0.086 0.145 0.215 0.130 0.081 0.040 0.227 0.023 0.062 0.371 0.382 9.851 3.626 0.120 0.117 5.996 2.292 1.242 1.259 0.219 0.355 0.527 0.578 0.211 0.075 0.186 0.188 0.119 0.201 0.164 0.220 0.303 0.346 0.009 0.057 0.032 0.025 0.086 0.040 0.033 0.068 0.049 0.046 1467 chr2 114325655 114351475 + 0 NA Intergenic Intergenic 2108 NR_031632 100302128 NR_031632 ENSG00000221055 MIR1302-3 MIRN1302-3|hsa-mir-1302-3 microRNA 1302-3 ncRNA 2.011 nan 2.027 1.056 1.097 0.642 1.922 0.473 0.267 0.570 0.393 1.460 nan 0.831 0.142 1.673 2.130 1.396 2.148 3.088 nan 2.652 1.029 2.282 2.196 1.264 1.761 1.540 1.950 2.393 1.987 1.180 1.778 0.834 0.754 1.902 3.550 1.809 1.057 0.650 1.314 0.274 0.448 1.922 1.460 0.648 1.457 0.482 1.996 416 chr11 15988055 15993507 + 0 NA TTS (NR_106721) TTS (NR_106721) 386 NR_106721 102464826 NR_106721 ENSG00000110693 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 1.535 nan 2.688 3.500 3.222 1.865 0.491 1.195 0.088 0.116 0.183 1.060 2.047 0.001 0.097 nan 0.522 11.672 12.290 0.890 0.956 0.873 0.233 1.684 1.956 1.624 nan 3.094 4.717 0.487 0.242 1.433 2.407 1.627 3.163 0.638 1.313 0.802 nan 1.108 0.281 0.106 0.072 0.491 1.060 1.748 0.581 0.726 117 chr1 53942473 53954579 + 0 NA Intergenic Intergenic 23454 NM_033067 63948 Hs.131654 NM_033067 ENSG00000143006 DMRTB1 - DMRT like family B with proline rich C-terminal 1 protein-coding 1.048 0.578 1.095 0.072 0.263 0.107 0.220 0.234 0.084 0.051 0.082 0.060 0.456 0.105 0.076 0.543 0.773 0.251 0.362 0.729 0.768 0.698 0.322 0.340 0.315 3.555 3.594 0.724 0.834 0.996 1.189 0.337 0.480 0.180 0.150 0.380 nan 0.398 0.494 0.133 0.059 0.023 0.080 0.220 0.060 0.611 0.300 0.164 0.093 1697 chr21 47292828 47310599 + 0 NA intron (NM_001130141, intron 1 of 12) L1MA8|LINE|L1 31838 NM_001130141 54039 Hs.474049 NM_020528 ENSG00000183570 PCBP3 ALPHA-CP3 poly(rC) binding protein 3 protein-coding nan 0.738 0.946 0.280 0.552 0.218 0.418 0.071 0.081 0.378 0.136 0.431 0.594 0.025 0.085 0.355 0.106 0.199 0.362 1.347 1.106 nan 0.071 0.127 0.108 0.329 nan 0.265 0.661 1.181 1.231 0.351 0.336 0.491 0.358 0.277 0.370 3.695 2.261 0.083 0.261 0.027 0.053 0.418 0.431 0.326 3.568 0.088 0.049 2547 chr9 129880911 129897424 + 0 NA intron (NM_001190728, intron 7 of 16) L1MEf|LINE|L1 -4123 NM_012098 23452 Hs.653262 NM_012098 ENSG00000136859 ANGPTL2 ARP2|HARP angiopoietin like 2 protein-coding nan nan 3.711 0.303 0.403 0.233 0.924 0.228 0.080 0.181 0.101 0.457 nan 0.046 0.052 0.357 0.452 0.193 0.368 0.858 0.833 0.696 0.208 0.734 0.825 2.187 nan 2.326 4.462 6.811 8.562 0.241 0.291 2.617 2.793 1.215 2.163 nan 0.992 0.737 1.860 1.260 0.288 0.924 0.457 1.983 2.214 0.079 0.761 1586 chr20 20338373 20397011 + 0 NA Intergenic Intergenic 18927 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 3.247 1.939 nan 3.539 3.671 1.867 2.224 0.107 0.080 1.874 0.924 4.851 6.220 0.046 0.072 1.705 2.151 0.314 0.383 6.638 5.414 6.226 2.422 0.586 0.589 2.975 4.196 5.819 6.617 5.821 7.590 1.212 2.276 6.224 5.686 0.659 1.029 2.025 1.163 1.893 4.018 1.545 1.177 2.224 4.851 1.454 2.390 1.131 0.661 1948 chr5 10282475 10311601 + 0 NA intron (NM_138809, intron 1 of 5) AluSz|SINE|Alu 11130 NM_138809 134147 Hs.192586 NM_138809 ENSG00000164237 CMBL JS-1 carboxymethylenebutenolidase homolog protein-coding nan nan nan 3.567 2.761 1.431 0.714 0.265 0.332 2.103 1.567 4.297 nan 0.317 0.147 0.341 0.214 0.540 0.767 4.814 4.775 3.254 0.791 0.266 0.230 nan 3.763 3.955 3.716 1.447 1.399 0.272 0.329 2.707 3.225 0.324 nan 4.100 2.107 2.332 2.098 0.746 0.344 0.714 4.297 0.467 0.763 0.085 0.161 982 chr16 72938957 73106200 + 0 NA intron (NM_006885, intron 1 of 9) intron (NM_006885, intron 1 of 9) 59696 NM_006885 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 0.840 1.452 nan 1.417 1.111 0.552 0.796 0.812 0.152 0.389 0.266 1.157 1.775 0.370 0.080 2.443 2.781 5.307 7.082 1.321 1.228 0.698 0.223 3.959 4.067 0.828 1.254 1.675 2.378 1.457 1.098 0.930 1.638 0.309 0.394 0.375 0.616 1.339 0.855 0.543 0.582 0.047 0.193 0.796 1.157 0.159 1.091 0.705 0.195 1868 chr3 186540038 186546123 + 0 NA intron (NR_125409, intron 1 of 3) intron (NR_125409, intron 1 of 3) 230 NR_125409 102724699 Hs.518476 NR_125409 ENSG00000232233 LINC02043 - long intergenic non-protein coding RNA 2043 ncRNA 2.114 1.833 1.022 1.809 1.394 0.491 1.914 0.270 0.026 0.875 0.502 0.452 4.665 0.535 0.039 1.218 1.561 0.883 1.529 2.513 2.341 14.879 4.147 2.166 2.524 0.715 1.389 1.742 2.804 3.537 4.496 0.759 1.310 4.326 3.846 1.675 1.732 3.494 1.586 1.041 1.274 0.762 0.754 1.914 0.452 0.177 0.347 0.243 0.855 1480 chr2 144183708 144200373 + 0 NA intron (NM_018460, intron 6 of 13) intron (NM_018460, intron 6 of 13) 305141 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 0.883 nan 1.366 0.095 0.246 0.114 0.191 1.061 0.122 0.064 0.151 0.108 0.317 0.026 0.076 0.340 0.161 0.297 0.822 0.224 0.278 0.215 0.068 0.232 0.215 3.591 3.853 0.310 0.271 0.385 0.168 0.078 0.170 0.040 0.061 0.356 0.683 0.318 0.352 0.029 0.016 0.017 0.137 0.191 0.108 0.024 0.018 0.065 0.106 77 chr1 33113399 33121852 + 0 NA exon (NM_005610, exon 2 of 12) exon (NM_005610, exon 2 of 12) 666 NM_001135256 5928 Hs.16003 NM_005610 ENSG00000162521 RBBP4 NURF55|RBAP48|lin-53 RB binding protein 4, chromatin remodeling factor protein-coding 5.281 nan 4.508 8.737 4.982 2.943 3.818 1.795 0.315 3.453 1.650 8.631 8.961 3.864 0.167 5.984 4.610 5.735 7.505 9.911 9.728 nan 3.468 10.114 10.843 5.322 6.464 5.305 8.209 nan 6.363 5.281 6.829 3.071 4.375 7.535 6.376 3.112 nan 3.999 3.503 0.667 2.850 3.818 8.631 1.524 1.790 1.911 2.341 1880 chr4 666625 677720 + 0 NA intron (NM_002477, intron 1 of 6) intron (NM_002477, intron 1 of 6) 461 NM_002477 4636 Hs.410970 NM_002477 ENSG00000215375 MYL5 - myosin light chain 5 protein-coding 1.477 1.032 nan 2.473 1.633 0.831 1.431 0.553 0.116 1.071 0.469 1.779 2.735 1.145 0.063 1.709 2.259 1.950 2.763 1.792 1.690 nan 1.695 2.861 3.051 0.707 0.901 1.521 2.387 1.346 1.241 1.500 1.997 0.743 0.542 1.088 1.383 nan 1.405 0.530 4.140 0.134 1.645 1.431 1.779 0.350 0.820 0.569 0.731 1264 chr19 13043309 13051299 + 0 NA Intergenic AluJr|SINE|Alu -2110 NM_004343 811 Hs.515162 NM_004343 ENSG00000179218 CALR CRT|HEL-S-99n|RO|SSA|cC1qR calreticulin protein-coding 5.151 2.697 5.568 3.075 5.196 2.728 3.233 1.699 0.202 1.571 0.815 4.027 4.362 2.070 0.098 3.068 3.399 3.053 5.275 6.585 6.752 8.822 4.043 5.268 5.335 3.705 5.023 6.256 10.146 9.131 9.418 2.013 4.032 4.764 5.649 8.713 8.836 4.604 2.022 9.184 2.823 1.158 1.055 3.233 4.027 1.316 2.431 0.985 4.074 2294 chr7 102230350 102257803 + 0 NA intron (NM_001079877, intron 5 of 19) intron (NM_001079877, intron 5 of 19) 13127 NM_001277335 100271927 Hs.530089 NM_001277335 ENSG00000170667 RASA4B - RAS p21 protein activator 4B protein-coding nan 1.622 3.468 0.667 1.276 0.660 2.695 0.418 0.277 0.862 0.520 1.048 2.093 0.795 0.194 1.342 2.528 0.990 1.280 2.396 2.279 1.942 0.614 1.958 1.923 0.599 0.852 2.747 3.252 2.081 1.923 0.657 0.947 1.277 0.942 1.690 nan 1.827 1.122 0.688 3.126 0.555 0.415 2.695 1.048 1.005 1.600 0.476 0.654 2411 chr8 109949709 109977211 + 0 NA Intergenic Intergenic -136193 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 0.911 nan nan 0.392 0.275 0.146 0.121 0.111 0.138 0.040 0.077 0.125 0.963 0.027 0.095 0.323 0.217 0.199 0.537 0.435 0.597 nan 2.585 0.611 0.629 0.383 nan 1.248 nan nan 0.161 0.103 0.246 0.377 0.518 0.243 nan 0.239 0.301 0.196 0.587 0.128 0.061 0.121 0.125 0.011 0.100 0.064 0.076 432 chr11 34633585 34691623 + 0 NA intron (NM_001206616, intron 1 of 8) MIRb|SINE|MIR 8593 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 0.616 1.368 nan 0.492 1.108 0.580 0.510 0.200 0.077 0.464 0.270 3.412 3.097 0.049 0.114 1.798 2.658 8.154 9.791 0.587 0.843 3.193 1.089 0.657 0.635 0.247 0.390 0.659 0.616 0.241 0.120 1.339 2.648 0.318 0.347 0.140 nan 0.564 0.563 1.067 0.238 0.129 0.044 0.510 3.412 0.028 0.203 1.611 0.141 1844 chr3 176498362 176512976 + 0 NA Intergenic Intergenic 29120 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 1.276 1.235 0.717 0.235 0.618 0.198 0.176 0.194 0.197 0.164 0.135 0.251 1.588 0.038 0.092 0.318 0.273 0.342 0.592 0.493 0.521 1.007 0.362 0.209 0.215 4.406 3.947 0.551 0.506 0.990 0.718 0.079 0.298 0.595 0.542 0.360 0.374 0.705 0.630 1.115 0.195 0.177 0.092 0.176 0.251 0.146 0.090 0.075 0.060 75 chr1 32797469 32808516 + 0 NA Intergenic Intergenic -1152 NR_052852 65108 Hs.75061 NM_023009 ENSG00000175130 MARCKSL1 F52|MACMARCKS|MLP|MLP1|MRP MARCKS like 1 protein-coding 3.033 nan 2.809 3.067 2.209 1.082 1.803 0.335 0.087 1.876 0.862 4.113 4.266 1.641 0.113 6.365 8.449 2.741 3.589 4.428 4.499 nan 1.032 4.240 4.262 1.832 2.684 1.852 2.571 nan 2.773 2.586 5.594 1.397 0.759 2.079 2.034 1.152 nan 1.697 1.952 0.243 1.330 1.803 4.113 0.395 1.117 1.550 0.681 310 chr1 234644906 234691376 + 0 NA promoter-TSS (NR_038426) promoter-TSS (NR_038426) -616 NR_038426 100506795 Hs.448989 NR_038426 ENSG00000231768 LINC01354 - long intergenic non-protein coding RNA 1354 ncRNA 1.835 2.069 1.887 0.834 1.663 0.836 2.528 1.518 0.235 1.223 0.555 1.723 2.773 0.138 0.115 0.633 1.087 1.148 3.874 1.611 1.579 nan 1.790 0.442 0.467 0.630 1.065 nan 2.115 0.736 0.621 0.398 0.513 0.927 1.607 0.744 1.915 nan 0.813 0.664 1.101 0.263 0.730 2.528 1.723 0.390 0.868 0.320 0.347 811 chr14 70462452 70478644 + 0 NA intron (NM_001034852, intron 7 of 11) intron (NM_001034852, intron 7 of 11) 76386 NM_182936 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 1.520 2.441 1.247 1.649 0.555 0.247 1.158 0.216 0.040 2.316 1.054 0.160 0.677 0.041 0.105 0.311 0.156 0.361 0.875 0.394 0.301 4.769 2.773 0.215 0.223 0.507 0.883 1.605 nan 0.681 0.387 1.100 1.096 6.521 6.980 0.272 0.580 3.347 nan 0.103 0.225 2.761 0.182 1.158 0.160 0.054 4.866 1.298 0.184 1385 chr2 673583 683777 + 0 NA Intergenic AluSz|SINE|Alu -1241 NM_152834 129787 Hs.43899 NM_152834 ENSG00000151353 TMEM18 - transmembrane protein 18 protein-coding 1.854 1.089 1.816 1.399 2.587 1.243 1.769 0.720 0.127 0.798 0.566 1.763 5.019 1.694 0.110 2.372 2.475 2.931 4.021 6.394 6.661 2.983 2.466 3.830 3.968 1.898 2.470 4.091 5.708 3.773 4.685 2.882 3.625 1.453 1.514 3.532 2.003 2.074 1.273 1.271 4.063 0.150 0.546 1.769 1.763 0.874 1.155 0.970 0.698 1073 chr17 40681603 40690564 + 0 NA Intergenic Intergenic -1868 NM_000263 4669 Hs.50727 NM_000263 ENSG00000108784 NAGLU CMT2V|MPS-IIIB|MPS3B|NAG|UFHSD N-acetyl-alpha-glucosaminidase protein-coding 3.812 3.028 nan 3.599 2.349 1.036 2.044 2.693 0.411 1.621 0.807 2.740 4.110 1.041 0.124 2.598 3.191 1.500 2.813 2.786 nan 4.009 1.436 4.462 4.178 1.692 2.430 4.793 nan 7.213 7.880 1.370 2.312 4.248 3.729 3.275 4.687 2.420 1.205 1.956 2.264 1.119 1.097 2.044 2.740 0.691 2.948 1.018 2.035 1201 chr18 52980024 52995103 + 0 NA intron (NM_001243228, intron 8 of 19) intron (NM_001243228, intron 8 of 19) 1527 NM_001243234 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding nan 1.867 1.301 0.245 1.833 0.913 0.483 2.063 0.106 1.038 0.769 0.889 0.364 1.519 0.063 2.968 3.000 4.535 5.279 5.249 4.990 2.037 0.780 1.419 1.496 2.613 3.138 1.050 1.026 10.404 10.980 0.872 1.424 5.899 6.671 2.815 3.068 7.507 3.500 0.265 0.387 1.420 3.526 0.483 0.889 1.028 1.045 0.746 1.371 1275 chr19 18127569 18142521 + 0 NA Intergenic Intergenic 16068 NM_001286826 27106 Hs.515249 NM_015683 ENSG00000105643 ARRDC2 CLONE24945|PP2703 arrestin domain containing 2 protein-coding 2.420 1.317 1.263 1.649 0.479 0.242 0.311 0.437 0.195 0.357 0.152 0.184 0.587 0.152 0.090 0.291 0.169 0.566 1.231 0.562 0.612 0.728 0.229 0.241 0.192 1.704 2.781 2.890 3.807 3.727 2.917 0.234 0.161 0.853 1.123 1.338 2.515 2.115 1.123 0.145 0.164 0.211 0.053 0.311 0.184 1.453 1.757 0.026 0.767 940 chr16 18798763 18816612 + 0 NA intron (NM_015161, intron 3 of 5) intron (NM_015161, intron 3 of 5) 5005 NM_001313858 23204 Hs.634882 NM_015161 ENSG00000170540 ARL6IP1 AIP1|ARL6IP|ARMER|SPG61 ADP ribosylation factor like GTPase 6 interacting protein 1 protein-coding 2.382 1.496 nan 2.203 2.087 1.185 1.388 0.808 0.136 1.016 0.598 2.258 5.174 1.714 0.134 1.879 2.270 1.818 2.383 3.425 3.147 4.386 1.581 4.107 3.941 2.086 2.724 6.133 8.301 nan 3.468 1.658 2.739 2.020 2.803 2.447 3.320 1.941 0.973 1.584 0.919 0.477 1.065 1.388 2.258 0.556 0.904 0.568 1.448 1004 chr17 4869496 4874161 + 0 NA promoter-TSS (NM_004890) promoter-TSS (NM_004890) -696 NM_004890 9552 Hs.90436 NM_004890 ENSG00000091640 SPAG7 ACRP|FSA-1 sperm associated antigen 7 protein-coding 4.172 2.193 3.386 2.635 4.232 2.733 5.410 1.625 0.171 1.150 0.582 4.343 7.543 4.763 0.129 7.247 9.838 5.056 8.518 6.089 5.722 6.445 2.188 8.523 10.021 3.130 4.120 8.677 9.731 4.198 3.400 2.879 4.892 2.478 2.304 4.128 8.228 1.999 0.840 8.504 3.336 0.610 1.579 5.410 4.343 1.082 6.937 2.337 3.145 2598 chrX 136435382 136454627 + 0 NA Intergenic Intergenic -203282 NM_001330661 7547 Hs.111227 NM_003413 ENSG00000156925 ZIC3 HTX|HTX1|VACTERLX|ZNF203 Zic family member 3 protein-coding 0.455 0.890 1.122 0.032 1.027 0.482 1.264 0.024 0.033 0.238 0.115 0.012 0.229 0.011 0.037 0.251 0.114 0.160 0.288 0.119 0.142 5.856 3.035 0.121 0.117 0.117 0.200 0.106 0.095 0.293 0.121 0.073 0.095 0.024 0.058 0.131 0.245 1.361 0.772 0.023 0.046 0.005 0.016 1.264 0.012 0.025 0.047 0.032 2256 chr7 44185917 44204197 + 0 NA intron (NM_000162, intron 1 of 9) MIRb|SINE|MIR 3830 NM_033508 2645 Hs.1270 NM_000162 ENSG00000106633 GCK FGQTL3|GK|GLK|HHF3|HK4|HKIV|HXKP|LGLK|MODY2 glucokinase protein-coding 3.092 1.248 nan 0.309 0.182 0.079 0.385 0.164 0.088 0.161 0.129 0.170 0.358 0.110 0.136 0.642 0.577 0.239 0.390 0.542 0.527 0.837 0.234 0.473 0.414 0.346 0.702 0.762 1.096 3.291 4.005 0.377 0.436 0.463 0.326 1.649 3.027 1.194 0.612 0.534 0.219 0.073 1.595 0.385 0.170 0.571 0.273 0.107 1.512 1853 chr3 177540007 177556318 + 0 NA intron (NR_110826, intron 1 of 2) L2c|LINE|L2 13509 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 1.771 2.036 1.301 1.142 4.990 2.559 0.959 1.613 0.198 1.185 0.568 1.337 2.494 0.060 0.098 0.823 1.152 0.973 1.418 1.416 1.430 11.370 6.532 0.275 0.303 1.283 1.768 1.538 1.632 0.864 0.448 0.204 0.397 2.096 1.770 1.766 5.437 2.543 1.573 0.191 0.443 0.374 0.522 0.959 1.337 0.041 0.476 0.091 1.279 1208 chr18 53487220 53536209 + 0 NA Intergenic Intergenic 75716 NR_110755 101927273 Hs.434335 NR_110755 ENSG00000260930 LINC01416 - long intergenic non-protein coding RNA 1416 ncRNA nan 0.740 0.769 0.103 0.256 0.152 0.313 0.193 0.069 0.067 0.074 0.188 0.277 2.439 0.115 0.376 0.253 0.403 0.544 0.468 0.558 0.395 0.207 0.531 0.509 0.464 0.682 0.314 0.354 0.530 0.359 0.150 0.246 0.151 0.188 0.179 0.276 nan 1.114 0.034 0.057 0.031 0.067 0.313 0.188 0.032 0.045 0.034 0.076 1904 chr4 77608449 77627448 + 0 NA intron (NM_020859, intron 2 of 10) intron (NM_020859, intron 2 of 10) 121244 NR_039655 100616254 NR_039655 ENSG00000283682 MIR548AH - microRNA 548ah ncRNA 1.397 1.009 1.343 1.395 1.274 0.692 0.693 0.447 0.136 0.805 0.397 1.761 2.634 0.880 0.075 1.227 1.246 1.930 5.027 2.102 1.962 3.109 1.658 0.656 0.608 0.241 0.331 2.191 4.531 0.485 0.300 0.329 0.684 0.560 0.535 0.267 0.599 1.148 0.759 0.191 1.774 0.075 0.410 0.693 1.761 0.036 1.041 0.142 0.111 739 chr13 111350506 111370724 + 0 NA Intergenic Intergenic -2088 NM_024537 79587 Hs.508725 NM_024537 ENSG00000134905 CARS2 COXPD27|cysRS cysteinyl-tRNA synthetase 2, mitochondrial (putative) protein-coding 3.646 nan 3.042 6.291 3.821 2.085 3.902 1.219 0.265 1.110 0.629 3.918 7.526 2.228 0.108 6.561 6.928 3.454 5.096 6.338 5.441 7.100 3.537 3.676 3.614 0.739 1.036 5.121 7.052 3.686 4.238 2.555 4.604 6.019 5.839 4.204 3.964 0.972 0.521 5.496 5.308 1.593 3.986 3.902 3.918 0.601 2.206 1.696 1.010 433 chr11 34699383 34708255 + 0 NA Intergenic AT_rich|Low_complexity|Low_complexity 49808 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 0.547 2.036 nan 0.418 0.380 0.181 0.332 0.344 0.127 0.263 0.159 0.643 0.825 0.037 0.114 0.549 0.629 1.334 4.767 0.423 0.438 10.733 4.748 0.317 0.280 0.246 0.421 0.440 0.487 0.276 0.122 0.136 0.255 0.384 0.835 0.145 nan 0.456 0.296 0.287 0.101 0.054 0.081 0.332 0.643 0.065 0.103 0.022 0.096 2003 chr5 90957633 90967532 + 0 NA Intergenic LTR33|LTR|ERVL -283392 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding nan 1.631 0.643 0.141 0.573 0.301 0.440 0.082 0.114 0.080 0.097 0.298 0.088 0.123 0.318 0.159 8.378 0.857 0.950 0.887 0.409 0.140 0.446 0.480 0.330 0.440 0.628 0.509 0.502 0.233 0.088 0.121 0.724 0.564 0.465 nan 0.399 0.359 0.099 0.961 0.087 0.024 0.440 0.039 0.238 0.030 0.187 131 chr1 61349841 61383755 + 0 NA Intergenic MER113B|DNA|hAT-Charlie 69650 NR_110618 100996570 Hs.46616 NR_110617 ENSG00000237928 NFIA-AS2 - NFIA antisense RNA 2 ncRNA 2.363 0.832 nan 0.220 0.475 0.281 0.729 0.337 0.115 0.139 0.122 0.318 1.140 0.023 0.099 0.509 0.385 0.275 0.355 0.782 0.821 0.135 0.069 0.308 0.352 nan nan 0.775 nan 2.611 2.913 0.188 0.260 0.710 0.472 0.436 1.124 1.186 0.896 0.244 0.139 0.160 0.240 0.729 0.318 1.353 0.162 0.032 0.208 1462 chr2 103618584 103630953 + 0 NA Intergenic Intergenic -23881 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 0.582 nan 1.035 0.056 0.250 0.103 0.202 0.096 0.041 0.176 0.132 0.107 0.615 0.027 0.068 0.789 2.007 0.472 0.374 0.676 0.986 0.164 0.101 0.294 0.230 5.934 6.304 0.324 0.361 1.949 1.947 0.678 1.894 0.034 0.032 0.331 0.372 0.437 0.579 0.046 0.015 0.008 0.180 0.202 0.107 0.658 0.049 3.095 0.507 2227 chr7 11012679 11025313 + 0 NA intron (NR_033436, intron 2 of 16) intron (NR_033436, intron 2 of 16) 5497 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding nan 2.035 nan 1.887 2.628 1.581 1.934 0.812 0.155 0.470 0.230 2.884 3.602 1.371 0.208 nan 3.233 1.949 2.434 3.204 2.663 2.610 1.372 12.989 12.812 2.140 2.712 3.575 5.373 2.411 2.353 0.994 1.833 3.116 3.313 2.875 3.319 1.509 0.943 1.704 1.318 0.657 1.138 1.934 2.884 0.658 1.555 0.853 0.946 1637 chr20 52550159 52566437 + 0 NA Intergenic Intergenic -66050 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 0.968 1.319 0.945 0.124 0.376 0.306 0.352 0.802 0.169 0.097 0.082 0.133 0.284 4.737 0.164 0.979 nan 0.725 1.354 0.550 0.611 0.099 0.049 0.378 0.327 0.386 0.621 0.507 0.548 1.347 0.917 0.617 1.159 0.036 0.037 0.329 0.932 0.222 0.380 0.206 0.210 0.006 0.196 0.352 0.133 0.095 0.025 0.450 0.305 1732 chr22 41089837 41143908 + 0 NA Intergenic MLT1C|LTR|ERVL-MaLR 41690 NM_005297 2847 Hs.248122 NM_005297 ENSG00000128285 MCHR1 GPR24|MCH-1R|MCH1R|SLC-1|SLC1 melanin concentrating hormone receptor 1 protein-coding 1.084 nan 1.020 0.720 2.544 1.250 0.466 0.184 0.139 0.360 0.285 0.870 1.838 0.124 0.121 0.286 0.244 0.266 0.776 0.740 0.689 1.895 0.539 0.172 0.205 0.892 nan 1.070 1.441 nan 0.727 0.201 0.236 2.278 3.207 0.492 1.154 0.872 0.461 0.842 0.749 1.127 0.034 0.466 0.870 0.433 0.111 0.057 0.328 1512 chr2 190623106 190640064 + 0 NA Intergenic L1MB3|LINE|L1 -3661 NM_022353 64172 Hs.60772 NM_022353 ENSG00000128694 OSGEPL1 OSGEPL|Qri7 O-sialoglycoprotein endopeptidase like 1 protein-coding 1.800 nan 1.407 1.123 1.186 0.681 0.659 0.401 0.104 0.416 0.391 0.755 2.141 0.692 0.096 3.113 2.569 1.638 1.677 1.403 1.354 1.366 0.657 8.869 9.209 1.588 1.835 1.779 2.300 3.596 3.326 2.128 2.966 0.829 0.644 2.745 5.742 0.851 0.481 0.653 0.507 0.146 0.458 0.659 0.755 0.149 0.556 0.963 2.227 263 chr1 201970900 202088518 + 0 NA Intergenic AluSz|SINE|Alu 50019 NM_004433 1999 Hs.603657 NM_004433 ENSG00000163435 ELF3 EPR-1|ERT|ESE-1|ESX E74 like ETS transcription factor 3 protein-coding 1.677 3.917 1.962 2.467 3.937 2.036 0.895 0.202 0.190 2.176 1.008 2.814 5.982 0.078 0.115 1.979 3.013 1.664 4.133 2.433 2.629 3.663 0.898 nan nan 0.448 0.787 4.670 5.798 0.739 0.592 1.024 1.832 3.209 2.956 0.504 1.078 1.798 0.942 2.342 4.550 1.159 0.760 0.895 2.814 0.358 0.673 1.730 0.163 958 chr16 30698494 30711855 + 0 NA Intergenic Intergenic 4636 NM_001256932 730183 Hs.535456 NM_001256932 LOC730183 - uncharacterized LOC730183 protein-coding 2.130 1.438 1.878 2.783 2.416 1.373 1.960 1.028 0.163 0.667 0.285 2.320 5.516 1.449 0.080 2.965 2.665 2.581 3.281 2.980 3.126 3.888 2.795 5.811 6.096 1.570 2.058 4.332 5.540 3.592 3.113 3.189 3.858 2.513 3.190 2.701 2.805 1.703 1.045 1.694 1.164 0.595 0.942 1.960 2.320 0.706 1.318 1.901 1.081 1317 chr19 41075331 41083877 + 0 NA intron (NM_020971, intron 35 of 35) AluSp|SINE|Alu -3153 NM_138392 92799 Hs.26506 NM_138392 ENSG00000160410 SHKBP1 PP203|Sb1 SH3KBP1 binding protein 1 protein-coding 2.139 1.292 1.813 0.915 1.340 0.547 0.616 0.489 0.170 0.475 0.242 0.716 8.769 1.983 0.147 0.847 0.917 1.291 1.781 1.871 1.289 2.224 0.788 1.588 1.766 1.443 1.912 1.987 2.924 1.869 1.157 0.622 0.798 0.632 0.525 1.452 2.800 1.455 0.820 1.009 1.341 0.089 0.390 0.616 0.716 0.478 0.914 0.278 0.908 231 chr1 164715889 164760404 + 0 NA TTS (NR_038072) TTS (NR_038072) 5732 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 1.444 nan 1.108 0.715 1.776 0.904 1.508 2.188 0.315 0.426 0.269 1.064 1.128 0.039 0.107 0.543 0.438 1.528 6.385 1.224 nan 2.264 1.245 0.171 0.164 3.989 4.561 1.653 nan 0.419 0.223 0.434 0.566 0.741 0.879 0.366 0.764 1.370 0.874 0.451 1.632 0.129 0.247 1.508 1.064 0.052 0.239 0.146 0.268 2246 chr7 27182054 27220711 + 0 NA TTS (NM_152739) TTS (NM_152739) 3767 NM_152739 3205 Hs.659350 NM_152739 ENSG00000078399 HOXA9 ABD-B|HOX1|HOX1.7|HOX1G homeobox A9 protein-coding 6.991 2.937 1.686 0.847 2.332 1.164 0.939 0.381 0.070 1.852 1.000 4.195 1.543 2.014 0.136 4.314 5.966 6.913 nan 8.846 7.145 2.758 0.970 1.987 2.093 3.738 5.164 7.045 8.371 2.570 2.763 3.792 8.735 3.422 2.936 0.351 nan 2.265 1.199 2.564 3.098 1.135 0.663 0.939 4.195 0.707 0.202 3.405 0.185 912 chr16 499142 509077 + 0 NA intron (NM_014700, intron 1 of 13) intron (NM_014700, intron 1 of 13) -20741 NM_001142272 9727 Hs.531642 NM_014700 ENSG00000090565 RAB11FIP3 CART1|Rab11-FIP3 RAB11 family interacting protein 3 protein-coding 0.879 nan 2.295 1.465 1.529 0.968 0.911 0.292 0.202 0.412 0.374 5.179 2.472 0.163 0.140 1.741 2.129 0.819 0.936 1.918 1.630 nan 0.794 1.356 1.449 0.809 nan 2.870 3.170 0.576 0.472 0.780 1.053 1.605 1.290 0.417 0.628 1.041 0.622 2.678 1.982 0.354 2.526 0.911 5.179 0.236 0.336 0.663 0.235 407 chr11 12327522 12356284 + 0 NA intron (NM_032867, intron 4 of 8) intron (NM_032867, intron 4 of 8) 33456 NM_032867 84953 Hs.128196 NM_032867 ENSG00000133808 MICALCL Ebitein1 MICAL C-terminal like protein-coding 1.433 nan 1.959 2.746 2.919 1.566 2.498 1.096 0.163 1.321 0.696 10.673 5.768 0.034 0.085 nan 2.173 3.404 2.944 6.891 7.453 4.092 1.308 10.887 11.768 2.230 nan 2.085 1.245 3.479 3.203 2.028 3.251 3.533 3.754 0.830 1.403 3.699 nan 6.734 2.170 1.200 2.421 2.498 10.673 0.313 0.897 2.476 0.605 1012 chr17 7460460 7466498 + 0 NA exon (NM_001198622, exon 3 of 5) exon (NM_001198622, exon 3 of 5) -1830 NR_037926 100533955 Hs.129673 NR_037926 SENP3-EIF4A1 - SENP3-EIF4A1 readthrough (NMD candidate) ncRNA 3.396 2.292 2.220 2.258 2.689 1.726 2.988 1.313 0.106 1.427 0.757 3.984 4.396 6.321 0.372 4.043 4.817 2.937 4.505 4.251 3.902 5.876 2.176 4.618 4.588 2.126 3.082 6.971 8.219 1.588 1.835 1.674 2.142 1.979 2.079 2.555 3.897 2.094 0.890 4.755 1.161 0.368 0.534 2.988 3.984 0.996 4.999 0.558 1.598 2079 chr6 19448080 19467436 + 0 NA intron (NR_134615, intron 1 of 1) intron (NR_134615, intron 1 of 1) 7706 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 1.267 nan 1.965 0.688 0.939 0.456 0.588 1.269 0.217 0.607 0.285 1.497 3.537 0.234 0.097 0.473 0.336 0.257 0.517 0.730 1.053 4.165 1.281 0.318 0.303 1.253 1.378 0.674 0.689 0.504 0.249 0.197 0.272 3.017 2.792 0.428 0.994 1.189 0.901 1.969 0.772 0.481 0.865 0.588 1.497 0.184 0.483 0.051 0.115 359 chr10 43890568 43906484 + 0 NA intron (NM_001098204, intron 1 of 3) AluJo|SINE|Alu 4773 NM_001098206 3185 Hs.808 NM_004966 ENSG00000169813 HNRNPF HNRPF|OK/SW-cl.23|mcs94-1 heterogeneous nuclear ribonucleoprotein F protein-coding 4.308 nan 4.854 5.620 6.774 3.652 2.852 2.450 0.386 1.797 0.857 4.364 7.536 3.382 0.130 5.947 5.464 5.690 8.837 5.948 4.790 4.716 2.581 11.430 11.553 2.561 3.495 5.596 9.510 2.154 2.066 2.946 5.292 5.054 5.112 5.315 4.549 1.889 1.082 2.595 2.090 1.049 2.054 2.852 4.364 0.306 1.957 1.538 1.718 1451 chr2 74733211 74743627 + 0 NA Intergenic Intergenic -3177 NM_016170 3196 Hs.168586 NM_016170 ENSG00000115297 TLX2 HOX11L1|NCX T-cell leukemia homeobox 2 protein-coding nan nan 2.644 1.825 2.149 1.200 1.462 1.271 0.246 0.814 0.369 1.650 3.597 2.033 0.132 1.532 1.865 2.915 4.444 3.406 3.286 4.581 1.931 3.461 3.856 1.436 1.800 2.615 2.845 4.434 3.706 1.365 1.993 0.855 1.210 6.694 11.856 nan 0.807 1.641 0.799 0.248 4.571 1.462 1.650 1.107 0.971 0.532 5.567 1496 chr2 175199482 175207775 + 0 NA Intergenic Intergenic 3807 NM_001145250 100131390 Hs.516603 NM_001145250 ENSG00000217236 SP9 ZNF990 Sp9 transcription factor protein-coding 2.919 2.601 1.053 0.391 3.045 1.440 1.848 0.403 0.056 1.519 0.802 2.253 10.158 3.490 0.062 0.374 0.290 0.837 0.816 1.483 1.072 2.540 0.659 0.894 0.858 2.043 2.743 0.948 1.458 1.177 1.334 0.744 1.407 0.454 0.474 0.417 0.879 0.948 0.599 1.913 0.353 0.030 1.380 1.848 2.253 0.302 1.114 0.142 0.164 1657 chr20 62609201 62613529 + 0 NA promoter-TSS (NM_080621) promoter-TSS (NM_080621) -370 NM_080621 140700 Hs.27189 NM_080621 ENSG00000130590 SAMD10 C20orf136|dJ591C20|dJ591C20.7 sterile alpha motif domain containing 10 protein-coding 3.452 6.098 3.375 6.623 4.447 2.604 4.075 1.062 0.116 2.467 1.543 4.610 13.162 3.204 0.126 11.064 12.524 2.672 3.863 6.043 6.014 8.353 3.287 10.833 11.132 4.286 6.002 9.769 9.908 3.684 4.805 5.792 9.125 1.669 1.396 1.625 3.638 3.639 2.141 5.900 5.206 0.331 2.675 4.075 4.610 1.725 7.762 4.012 1.166 151 chr1 92945738 92951590 + 0 NA intron (NM_001127215, intron 2 of 6) CpG-1329 692 NM_001127215 2672 Hs.73172 NM_005263 ENSG00000162676 GFI1 GFI-1|GFI1A|SCN2|ZNF163 growth factor independent 1 transcriptional repressor protein-coding nan nan 0.570 2.974 1.532 0.701 0.791 0.128 0.055 0.602 0.170 1.155 3.300 0.440 0.060 0.405 0.182 0.530 0.970 3.566 nan 4.624 0.991 4.305 4.155 1.754 nan 3.227 4.359 nan 0.773 0.369 0.559 0.268 0.192 0.224 0.401 1.977 1.244 1.250 0.541 0.040 8.045 0.791 1.155 0.241 0.626 0.067 0.064 1854 chr3 179039537 179043085 + 0 NA promoter-TSS (NM_016331) promoter-TSS (NM_016331) -240 NM_016331 51193 Hs.632578 NM_016331 ENSG00000121864 ZNF639 ANC-2H01|ANC_2H01|ZASC1 zinc finger protein 639 protein-coding 8.425 4.860 4.651 5.831 5.093 2.430 3.505 5.078 1.044 5.475 3.442 4.083 9.382 3.455 0.160 4.783 6.075 6.327 9.073 10.021 7.966 12.830 4.807 10.166 10.624 6.301 9.245 8.042 12.722 15.901 20.789 3.583 9.905 9.751 7.713 10.726 9.710 4.007 2.320 1.095 4.576 1.934 4.917 3.505 4.083 1.412 2.533 2.234 4.067 2471 chr9 3396258 3414310 + 0 NA intron (NM_001282116, intron 1 of 16) intron (NM_001282116, intron 1 of 16) -9688 NM_002919 5991 Hs.136829 NM_002919 ENSG00000080298 RFX3 - regulatory factor X3 protein-coding 1.008 1.795 0.870 0.258 1.853 1.094 1.518 0.108 0.062 0.408 0.299 0.562 0.314 0.179 0.106 0.983 0.575 1.899 2.264 0.725 0.678 2.928 0.801 0.769 0.630 4.082 4.681 0.258 0.192 0.561 0.242 1.305 2.058 3.300 7.370 0.247 nan 1.247 0.838 0.084 0.270 0.876 1.089 1.518 0.562 0.130 0.046 1.261 0.048 2439 chr8 143368852 143384905 + 0 NA intron (NM_001291931, intron 8 of 10) intron (NM_001291931, intron 8 of 10) 97161 NR_024378 619434 Hs.393308 NR_024378 ENSG00000254008 LINC00051 C8orf43|NCRNA00051 long intergenic non-protein coding RNA 51 ncRNA 1.374 1.212 nan 0.928 0.795 0.449 0.440 0.042 0.020 0.283 0.219 1.684 3.811 0.047 0.061 0.529 0.818 0.109 0.202 nan 5.350 nan 0.245 0.391 0.431 0.625 0.829 0.828 1.332 1.040 1.001 0.454 0.617 0.367 0.268 0.274 0.374 1.713 0.969 5.404 2.538 0.048 0.114 0.440 1.684 0.464 0.172 0.067 0.133 2072 chr6 16710447 16771159 + 0 NA intron (NM_001128164, intron 2 of 7) intron (NM_001128164, intron 2 of 7) -20566 NR_136240 101928433 Hs.408455 NR_136240 LOC101928433 - uncharacterized LOC101928433 ncRNA 1.297 nan 0.689 0.086 0.586 0.293 1.442 2.401 0.270 0.239 0.144 0.552 0.541 0.054 0.096 0.508 0.608 1.898 3.837 0.734 0.626 0.946 0.328 1.087 1.099 2.369 3.193 0.160 0.177 0.517 0.403 0.585 1.004 2.073 3.075 0.579 0.992 0.733 0.540 0.017 0.198 0.464 0.252 1.442 0.552 0.014 0.023 0.589 0.224 1089 chr17 46615014 46698227 + 0 NA promoter-TSS (NM_024015) promoter-TSS (NM_024015) 689 NR_029608 406902 NR_029608 ENSG00000257178 MIR10A MIRN10A|hsa-mir-10a|miRNA10A|mir-10a microRNA 10a ncRNA 1.365 8.785 nan 5.908 4.645 2.499 0.110 0.109 0.052 5.508 2.511 4.983 13.399 2.246 0.117 0.384 0.608 0.405 0.581 2.671 nan 2.250 0.816 1.283 1.380 1.477 2.234 3.092 nan 1.021 0.607 0.193 0.237 4.154 3.180 0.113 0.213 4.568 2.330 1.542 8.665 1.512 0.033 0.110 4.983 0.040 1.488 0.045 0.050 225 chr1 161166457 161173883 + 0 NA intron (NM_004550, intron 1 of 14) intron (NM_004550, intron 1 of 14) 1065 NM_004550 4720 Hs.173611 NM_004550 ENSG00000158864 NDUFS2 CI-49 NADH:ubiquinone oxidoreductase core subunit S2 protein-coding 6.396 nan 3.369 1.613 1.701 0.956 4.524 4.480 0.453 1.413 0.945 2.305 4.153 1.620 0.134 2.968 2.729 4.612 6.622 4.852 nan 8.025 3.823 3.155 3.318 7.615 8.809 3.302 nan 2.761 2.483 5.231 9.240 3.474 4.901 4.791 7.789 2.833 1.576 1.698 2.540 0.795 1.323 4.524 2.305 1.055 1.887 6.991 2.612 2318 chr7 129353992 129369883 + 0 NA intron (NM_001040110, intron 9 of 10) intron (NM_001040110, intron 9 of 10) 48395 NR_029614 406958 NR_029614 ENSG00000207990 MIR182 MIRN182|miRNA182|mir-182 microRNA 182 ncRNA 1.068 0.664 0.953 1.272 1.178 0.525 0.274 0.249 0.081 0.404 0.252 1.687 0.610 0.116 0.145 0.760 0.749 0.348 0.419 0.872 1.146 4.837 1.563 0.487 0.382 0.450 0.610 1.648 1.283 0.423 0.230 0.493 0.831 0.897 1.477 0.397 0.935 1.545 1.000 0.115 0.447 0.096 0.649 0.274 1.687 0.595 0.659 0.205 0.202 2555 chr9 131445397 131454087 + 0 NA intron (NM_001248000, intron 1 of 7) AluSx|SINE|Alu -1767 NM_003011 6418 Hs.436687 NM_003011 ENSG00000119335 SET 2PP2A|I2PP2A|IGAAD|IPP2A2|PHAPII|TAF-I|TAF-IBETA SET nuclear proto-oncogene protein-coding nan 2.514 3.166 5.179 3.303 1.602 3.554 2.649 0.353 2.150 0.866 3.599 4.248 3.789 0.121 2.616 2.681 4.218 6.221 5.550 5.440 nan 1.596 4.748 4.715 1.826 2.204 7.046 9.973 7.396 7.993 2.293 4.786 5.279 4.956 3.850 4.549 2.028 1.021 2.626 1.310 1.415 0.977 3.554 3.599 0.647 2.157 1.317 1.491 2268 chr7 57925778 57929435 + 0 NA Intergenic Intergenic 417723 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding nan 3.574 0.766 0.089 0.259 0.209 0.528 0.160 0.048 0.202 5.334 1.203 3.736 0.245 11.307 15.416 0.117 0.202 0.302 0.275 0.938 0.362 0.216 0.220 0.183 0.370 0.373 0.379 0.881 0.864 1.432 2.630 0.126 0.227 0.523 0.507 0.214 0.148 0.007 0.048 0.128 0.528 5.334 0.052 0.071 0.273 0.026 570 chr12 11896486 11912080 + 0 NA intron (NM_001987, intron 1 of 7) intron (NM_001987, intron 1 of 7) 101495 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 0.825 1.044 1.489 2.373 0.438 0.196 0.256 0.172 0.031 0.660 0.375 0.817 1.661 0.067 0.112 0.251 0.210 0.548 1.451 nan 1.168 4.642 1.671 0.477 0.484 0.430 0.543 2.120 2.188 0.353 0.198 0.264 0.339 0.234 0.344 0.391 0.614 1.264 0.658 1.020 0.405 0.037 0.035 0.256 0.817 0.012 0.078 0.062 0.158 120 chr1 54035730 54040224 + 0 NA intron (NM_147193, intron 3 of 9) MIRb|SINE|MIR 112905 NM_033067 63948 Hs.131654 NM_033067 ENSG00000143006 DMRTB1 - DMRT like family B with proline rich C-terminal 1 protein-coding 1.276 1.003 1.920 0.272 0.336 0.178 1.590 0.376 0.071 0.081 0.130 0.134 2.817 0.049 0.134 0.831 1.360 10.801 12.692 1.208 1.124 0.781 0.341 0.879 0.774 3.659 3.678 1.812 2.187 1.446 1.229 1.115 2.109 0.381 0.177 0.374 nan 0.385 0.454 0.719 0.546 0.086 0.158 1.590 0.134 0.808 0.127 1.517 0.136 2442 chr8 143520312 143541624 + 0 NA Intergenic Intergenic -14409 NM_001702 575 Hs.194654 NM_001702 ENSG00000181790 ADGRB1 BAI1|GDAIF adhesion G protein-coupled receptor B1 protein-coding 1.064 0.619 nan 0.141 0.478 0.257 0.760 0.060 0.052 0.066 0.075 1.739 1.918 0.346 0.049 1.032 1.575 0.139 0.185 nan 3.019 nan 0.158 0.254 0.297 0.671 1.077 0.445 0.824 0.855 0.886 0.648 0.742 0.188 0.206 0.244 0.287 0.569 0.367 1.754 0.437 0.013 0.107 0.760 1.739 0.264 0.241 0.241 0.040 825 chr14 89762720 89773481 + 0 NA intron (NM_001085471, intron 3 of 6) AluSg4|SINE|Alu 115354 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 1.847 2.482 nan 3.215 0.979 0.439 1.107 1.688 0.179 1.730 0.577 2.941 8.259 0.090 0.142 0.280 0.193 0.704 0.548 5.346 4.193 1.616 1.951 0.421 0.459 1.425 1.994 5.289 11.284 0.766 0.420 0.120 0.198 0.475 0.553 0.295 0.454 nan 2.571 5.191 2.991 0.142 0.148 1.107 2.941 0.022 0.969 0.073 0.093 870 chr15 60766910 60772108 + 0 NA intron (NM_001276385, intron 2 of 8) intron (NM_001276385, intron 2 of 8) 1850 NM_024611 79664 Hs.200943 NM_024611 ENSG00000128915 ICE2 BRCC1|NARG2 interactor of little elongation complex ELL subunit 2 protein-coding 3.947 2.837 nan 2.442 3.607 1.354 2.892 1.364 0.172 2.148 0.872 4.262 6.423 2.163 0.082 4.052 3.758 10.318 11.204 3.784 3.595 nan 2.033 6.243 6.594 4.536 5.279 4.431 7.046 7.566 7.088 3.086 4.610 5.404 5.317 4.078 4.238 2.563 1.652 1.373 1.472 0.750 0.766 2.892 4.262 1.109 1.997 1.137 1.091 2004 chr5 91438908 91454017 + 0 NA Intergenic Intergenic -767272 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding nan 7.922 0.544 0.397 0.248 0.095 0.736 0.139 0.084 0.072 0.093 0.241 0.079 0.111 0.203 0.146 0.813 0.636 0.253 0.408 0.272 0.165 0.124 0.152 0.245 0.452 0.216 0.222 0.447 0.133 0.110 0.190 1.468 1.220 0.234 nan 0.268 0.185 0.058 0.064 0.592 0.037 0.736 0.007 0.047 0.071 0.083 808 chr14 69817289 69829838 + 0 NA Intergenic AluY|SINE|Alu 41458 NM_004450 2079 Hs.509791 NM_004450 ENSG00000100632 ERH DROER enhancer of rudimentary homolog (Drosophila) protein-coding 1.387 0.615 0.727 0.144 0.298 0.158 0.280 0.197 0.064 0.049 0.080 0.167 0.457 0.043 0.102 0.490 0.411 0.293 0.444 0.501 0.519 0.317 0.207 0.536 0.528 0.431 0.765 2.293 nan 0.832 0.738 0.375 0.406 0.099 0.159 0.182 0.276 0.829 nan 11.295 1.968 0.015 0.151 0.280 0.167 0.116 0.161 0.055 0.059 863 chr15 43799821 43810954 + 0 NA Intergenic AluSp|SINE|Alu -2680 NM_005657 7158 Hs.440968 NM_005657 ENSG00000067369 TP53BP1 53BP1|TDRD30|TP53|p202|p53BP1 tumor protein p53 binding protein 1 protein-coding 2.179 1.235 nan 0.807 1.448 0.782 4.292 1.417 0.217 0.822 0.566 1.603 3.093 0.467 0.090 1.229 1.888 0.660 0.844 2.512 2.175 3.877 0.876 0.556 0.676 1.694 nan 2.396 3.436 4.556 4.247 1.006 1.166 1.803 2.417 2.879 4.006 2.175 1.243 0.728 2.526 0.445 0.576 4.292 1.603 1.511 1.780 0.825 0.904 1354 chr19 48819625 48838118 + 0 NA promoter-TSS (NM_001313905) promoter-TSS (NM_001313905) 242 NM_001425 2014 Hs.9999 NM_001425 ENSG00000142227 EMP3 YMP epithelial membrane protein 3 protein-coding 2.860 1.971 4.688 2.145 5.102 2.576 1.546 1.678 0.358 0.929 0.604 2.151 4.439 2.516 0.126 1.610 2.408 1.574 2.233 4.764 3.612 5.987 2.144 3.271 3.381 3.598 4.604 3.601 4.864 3.586 3.284 1.284 2.109 4.952 4.887 2.478 4.520 2.961 1.318 3.304 5.236 2.128 1.236 1.546 2.151 1.359 1.488 2.639 1.222 51 chr1 22831596 22855547 + 0 NA intron (NM_001330398, intron 10 of 15) intron (NM_001330398, intron 10 of 15) -46424 NM_001006943 2046 Hs.283613 NM_020526 ENSG00000070886 EPHA8 EEK|EK3|HEK3 EPH receptor A8 protein-coding 1.034 0.826 nan 0.710 0.382 0.131 0.354 0.097 0.091 0.325 0.247 0.030 1.067 0.095 0.120 0.322 0.440 0.266 0.387 1.106 1.106 0.423 0.175 0.354 0.383 0.671 0.899 1.946 2.232 0.520 0.353 0.251 0.326 0.281 0.293 0.456 1.042 1.246 0.675 1.564 4.003 0.131 0.084 0.354 0.030 0.252 0.110 0.050 0.268 464 chr11 64066466 64074481 + 0 NA intron (NR_133662, intron 8 of 10) AluSg|SINE|Alu -2527 NM_001282451 2101 Hs.110849 NM_004451 ENSG00000173153 ESRRA ERR1|ERRa|ERRalpha|ESRL1|NR3B1 estrogen related receptor alpha protein-coding nan 2.456 1.545 2.326 2.141 1.015 1.647 1.492 0.199 0.925 0.563 1.177 8.807 2.116 0.123 3.617 4.685 3.142 3.999 2.528 2.080 3.758 1.447 6.277 6.583 2.285 3.162 2.923 4.873 2.987 3.646 3.406 3.358 3.766 3.021 1.814 2.019 1.802 0.909 1.439 3.409 0.710 0.932 1.647 1.177 0.773 2.644 1.462 0.837 422 chr11 19259776 19267219 + 0 NA promoter-TSS (NM_024680) promoter-TSS (NM_024680) -295 NM_001256372 79733 Hs.523526 NM_024680 ENSG00000129173 E2F8 E2F-8 E2F transcription factor 8 protein-coding 1.494 nan 1.561 2.439 1.130 0.689 1.117 1.291 0.107 0.451 0.266 1.388 10.086 1.238 0.076 nan 2.858 2.839 4.070 1.488 1.412 2.153 1.308 5.305 5.091 1.145 nan 2.004 2.552 1.585 1.253 0.986 1.609 1.598 2.157 0.892 0.795 0.889 nan 0.853 1.272 0.396 0.927 1.117 1.388 0.145 0.574 0.319 0.166 2579 chr9 140188986 140211739 + 0 NA TTS (NM_017820) TTS (NM_017820) -3659 NM_001004354 441478 Hs.535075 NM_001004354 ENSG00000198435 NRARP - NOTCH-regulated ankyrin repeat protein protein-coding 1.734 1.459 1.247 4.193 0.989 0.502 1.503 0.291 0.219 0.497 0.182 1.737 0.970 1.224 0.078 1.148 2.069 0.806 nan 2.078 nan 2.238 0.619 0.736 0.712 0.279 0.436 3.994 6.693 1.534 1.682 0.826 1.039 1.772 1.877 0.838 0.937 0.679 0.552 0.964 0.383 0.371 0.532 1.503 1.737 1.015 3.365 0.482 0.135 2084 chr6 19936171 19946636 + 0 NA Intergenic (GAAA)n|Simple_repeat|Simple_repeat 103802 NM_001546 3400 Hs.519601 NM_001546 ENSG00000172201 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, HLH protein protein-coding 1.054 nan 0.945 1.257 2.372 1.225 0.207 0.130 0.139 0.586 0.250 1.839 0.828 0.093 0.072 0.356 0.226 0.154 0.226 0.493 0.585 7.672 2.030 0.288 0.172 0.324 0.463 0.912 0.836 0.469 0.318 0.121 0.185 2.534 2.665 0.527 1.354 3.169 1.403 0.142 0.255 0.647 0.258 0.207 1.839 0.098 0.090 0.037 0.325 2569 chr9 137297035 137306960 + 0 NA intron (NM_001291921, intron 3 of 8) intron (NM_001291921, intron 3 of 8) 3569 NM_001291921 6256 Hs.590886 NM_002957 ENSG00000186350 RXRA NR2B1 retinoid X receptor alpha protein-coding nan 2.532 0.831 0.203 1.181 0.501 2.965 1.649 0.468 0.094 0.083 3.353 4.493 0.202 0.036 0.929 0.814 1.701 4.236 2.524 2.629 nan 0.135 1.449 1.365 0.596 0.999 2.974 4.548 1.232 1.131 0.673 0.727 1.728 2.561 0.350 0.223 1.708 0.793 3.638 1.534 0.334 0.207 2.965 3.353 0.940 2.783 0.270 0.074 205 chr1 155900097 155917091 + 0 NA Intergenic Intergenic -2886 NM_181885 339403 Hs.449914 NM_181885 ENSG00000173080 RXFP4 GPCR142|GPR100|RLN3R2|RXFPR4 relaxin/insulin like family peptide receptor 4 protein-coding nan nan 2.448 1.760 2.183 1.198 1.840 1.542 0.257 1.584 0.867 1.556 10.474 1.586 0.093 2.589 2.852 2.973 4.900 3.474 nan 3.084 1.281 1.850 1.813 2.135 2.944 4.765 4.363 2.539 2.098 3.201 4.399 1.740 2.282 2.428 3.355 1.745 1.055 0.919 1.884 0.388 0.624 1.840 1.556 0.438 2.935 1.361 0.784 331 chr10 1450650 1530046 + 0 NA intron (NM_018702, intron 1 of 9) intron (NM_018702, intron 1 of 9) -78477 NR_033387 642394 Hs.568831 NM_001098830 ENSG00000205696 ADARB2-AS1 C10orf109|NCRNA00168|bA466B20.1 ADARB2 antisense RNA 1 ncRNA 0.483 0.444 0.725 0.539 4.121 2.138 0.492 0.138 0.105 1.249 0.574 5.488 0.537 0.031 0.076 0.803 1.330 0.117 0.150 1.999 2.122 0.267 0.134 0.739 0.773 0.105 0.191 3.573 3.818 0.166 0.082 0.933 1.852 0.029 0.045 0.084 0.110 0.044 0.053 0.813 4.051 0.007 0.050 0.492 5.488 0.192 0.184 2.278 0.017 1945 chr5 3749246 3756420 + 0 NA Intergenic Intergenic 156665 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 0.367 0.735 0.758 0.099 0.128 0.067 0.123 0.067 0.181 0.147 0.056 0.349 0.031 0.119 3.292 1.638 7.847 nan 0.469 0.541 0.089 0.042 0.020 0.065 0.209 0.236 nan 0.216 nan 0.355 0.628 0.948 0.063 0.041 0.103 0.155 0.160 nan 0.024 0.049 0.013 0.123 0.056 0.081 0.028 0.389 0.017 1691 chr21 44435823 44458102 + 0 NA intron (NM_004571, intron 9 of 10) intron (NM_004571, intron 9 of 10) 41552 NM_001321072 875 Hs.533013 NM_000071 ENSG00000160200 CBS HIP4 cystathionine-beta-synthase protein-coding nan 0.674 1.036 0.122 0.322 0.170 0.184 0.122 0.079 0.090 0.090 0.107 0.463 0.087 0.081 0.916 1.221 4.522 7.535 0.452 0.501 nan 0.111 0.397 0.451 0.489 nan 0.368 0.483 0.510 0.316 0.344 0.482 0.109 0.124 0.384 0.741 0.617 0.466 0.175 0.158 0.022 0.079 0.184 0.107 0.031 0.046 0.084 0.105 797 chr14 60617800 60633173 + 0 NA intron (NM_001322280, intron 1 of 6) L3|LINE|CR1 6725 NM_016029 51635 Hs.59719 NM_016029 ENSG00000100612 DHRS7 CGI-86|SDR34C1|retDSR4|retSDR4 dehydrogenase/reductase 7 protein-coding nan nan 2.200 2.339 1.583 0.922 2.089 0.818 0.105 0.531 0.451 1.222 3.057 0.409 0.131 1.235 1.672 0.867 1.451 2.658 2.488 2.353 0.877 nan 3.168 1.268 1.874 3.692 nan 3.951 3.057 1.111 2.025 3.540 4.304 1.054 2.369 1.698 0.978 0.582 1.958 0.905 3.105 2.089 1.222 0.528 0.592 0.781 0.972 754 chr14 23387142 23389412 + 0 NA promoter-TSS (NR_120599) promoter-TSS (NR_120599) 119 NM_001308044 55147 Hs.4997 NM_018107 ENSG00000100461 RBM23 CAPERbeta|PP239|RNPC4 RNA binding motif protein 23 protein-coding 10.766 4.464 4.051 11.231 8.055 4.606 3.624 4.024 1.529 2.544 1.304 5.121 16.961 4.597 0.236 3.293 3.397 8.959 13.888 11.059 8.502 10.979 8.534 0.343 0.276 7.705 7.745 7.869 11.460 12.594 11.648 5.543 7.610 10.749 11.344 6.855 6.084 4.160 2.586 6.725 5.915 1.457 4.241 3.624 5.121 6.272 5.439 1.653 2.237 399 chr11 4656456 4670867 + 0 NA Intergenic AluSc|SINE|Alu -1495 NM_152430 143503 Hs.470038 NM_152430 ENSG00000180785 OR51E1 D-GPCR|DGPCR|GPR136|GPR164|OR51E1P|OR52A3P|POGR|PSGR2 olfactory receptor family 51 subfamily E member 1 protein-coding 0.424 0.704 0.559 0.365 0.397 0.290 0.072 0.156 0.068 0.281 0.187 0.174 0.517 0.052 0.083 0.456 0.220 0.335 0.393 0.682 0.855 2.193 0.875 0.194 0.134 0.156 0.341 8.210 6.741 0.643 0.558 0.259 0.367 0.273 0.313 0.214 0.375 2.557 1.391 0.161 0.234 0.072 0.027 0.072 0.174 0.013 0.882 0.152 0.052 1138 chr17 79619754 79626824 + 0 NA intron (NM_002602, intron 1 of 3) intron (NM_002602, intron 1 of 3) 318 NR_026872 5148 Hs.654482 NM_002602 ENSG00000185527 PDE6G PDEG|RP57 phosphodiesterase 6G protein-coding 1.620 1.133 1.447 0.124 0.524 0.342 0.236 0.180 0.168 0.113 0.172 0.198 0.495 0.132 0.098 1.633 1.411 0.624 1.136 0.465 0.645 0.749 0.328 1.272 1.370 nan 0.515 0.276 0.526 1.833 1.646 0.949 0.916 0.171 0.281 2.851 7.619 nan 0.585 0.056 0.099 0.054 0.089 0.236 0.198 0.142 0.132 0.361 6.724 277 chr1 205089534 205092385 + 0 NA intron (NM_005057, intron 1 of 13) intron (NM_005057, intron 1 of 13) 191 NM_005057 5929 Hs.519230 NM_005057 ENSG00000117222 RBBP5 RBQ3|SWD1 RB binding protein 5, histone lysine methyltransferase complex subunit protein-coding 4.830 5.179 5.609 4.619 6.911 3.315 4.892 4.034 0.282 2.954 1.548 5.111 9.691 5.272 0.160 10.431 10.467 13.503 19.563 11.673 13.410 8.189 8.178 nan nan 6.087 7.396 8.825 12.675 9.236 7.960 6.195 7.128 6.215 8.687 8.310 9.555 4.577 2.502 3.197 6.402 0.867 2.543 4.892 5.111 1.223 1.886 1.656 2.384 1335 chr19 45244625 45259591 + 0 NA exon (NM_005178, exon 1 of 9) exon (NM_005178, exon 1 of 9) 130 NM_005178 602 Hs.31210 NM_005178 ENSG00000069399 BCL3 BCL4|D19S37 B-cell CLL/lymphoma 3 protein-coding 1.403 2.189 1.159 0.771 0.831 0.405 0.605 3.734 0.582 0.545 0.195 0.942 1.842 3.015 0.156 0.539 1.025 1.913 3.969 1.385 1.224 2.013 0.624 3.832 3.918 0.851 1.420 3.947 8.378 1.128 0.809 0.675 0.892 0.740 0.713 0.922 2.080 1.773 1.090 0.358 0.077 0.103 0.026 0.605 0.942 0.272 4.995 0.370 0.404 295 chr1 221880247 221926947 + 0 NA intron (NR_111940, intron 1 of 2) intron (NR_111940, intron 1 of 2) 6645 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 2.421 nan 2.892 1.416 2.198 1.115 1.159 0.122 0.103 2.271 0.834 2.608 2.286 0.051 0.117 0.852 0.756 2.242 3.703 2.851 nan 3.342 2.596 2.684 2.922 1.299 1.537 2.865 3.974 1.389 1.474 0.200 0.229 2.922 3.265 2.352 5.218 2.320 1.350 0.333 0.332 0.687 0.752 1.159 2.608 0.141 1.144 0.055 2.113 2081 chr6 19749607 19756644 + 0 NA intron (NR_134651, intron 2 of 3) L2c|LINE|L2 51865 NR_134651 100506885 Hs.346489 NR_134649 ENSG00000228412 LOC100506885 - uncharacterized LOC100506885 ncRNA 2.316 nan 6.800 1.243 2.058 1.198 0.586 0.962 0.046 2.354 0.882 6.045 1.739 0.199 0.075 0.566 0.738 0.330 0.678 2.251 2.752 5.210 1.273 0.365 0.308 1.982 2.307 0.486 0.482 4.026 3.449 0.382 0.755 5.336 6.850 2.671 7.277 0.994 0.700 0.071 0.580 0.893 1.688 0.586 6.045 2.259 0.144 0.225 3.627 1002 chr17 2344772 2370040 + 0 NA intron (NM_024086, intron 6 of 9) L1MC4|LINE|L1 -38676 NR_028335 284009 Hs.632244 NM_001025459 LOC284009 - uncharacterized LOC284009 ncRNA 1.339 0.844 0.910 0.175 0.343 0.262 0.209 0.200 0.115 0.087 0.128 0.275 0.768 0.086 0.099 0.390 0.418 0.227 0.373 0.577 0.790 0.511 0.265 0.377 0.378 0.743 1.110 0.769 0.880 1.972 1.500 0.174 0.193 0.242 0.423 1.021 4.044 0.635 0.355 0.501 1.033 0.079 0.400 0.209 0.275 0.407 0.064 0.051 1.313 2148 chr6 51242981 51265171 + 0 NA Intergenic Intergenic -232592 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 0.773 0.905 nan 0.318 0.425 0.303 0.335 0.114 0.094 0.078 0.080 0.750 0.637 0.020 0.115 0.693 0.319 5.772 5.990 0.649 0.731 0.126 0.065 0.611 0.696 0.165 0.286 0.394 0.413 0.233 0.071 0.325 0.436 0.459 0.456 0.212 0.363 0.137 0.283 0.032 0.143 0.086 0.107 0.335 0.750 0.005 0.082 0.062 0.066 1047 chr17 30675927 30680038 + 0 NA TTS (NR_030362) TTS (NR_030362) 825 NM_003457 7756 Hs.500775 NM_003457 ENSG00000010244 ZNF207 BuGZ|hBuGZ zinc finger protein 207 protein-coding nan 4.237 3.624 3.352 7.337 4.501 3.928 4.358 0.492 1.720 1.016 5.876 9.692 9.829 0.350 10.463 8.161 10.372 13.928 nan 9.353 10.740 5.817 21.701 23.299 6.083 7.365 8.975 13.090 16.014 15.949 6.399 9.536 7.292 10.710 12.892 10.569 4.399 2.421 4.023 2.848 1.023 2.517 3.928 5.876 1.750 2.169 2.055 2.520 1482 chr2 145178575 145244780 + 0 NA intron (NM_001171653, intron 2 of 8) intron (NM_001171653, intron 2 of 8) -65504 NR_040248 100303491 Hs.560789 NR_040248 ENSG00000238057 ZEB2-AS1 ZEB2-AS|ZEB2AS|ZEB2NAT ZEB2 antisense RNA 1 ncRNA 1.095 nan 1.066 0.695 1.411 0.695 0.284 0.415 0.076 0.596 0.486 0.499 0.668 0.021 0.086 0.358 0.234 9.085 11.829 0.788 0.716 0.354 0.175 0.233 0.233 1.128 1.346 0.421 0.489 1.145 0.910 0.171 0.516 0.077 0.053 0.599 1.146 0.525 0.432 0.144 0.069 0.026 0.258 0.284 0.499 0.161 0.074 0.236 0.217 1680 chr21 36624609 36631440 + 0 NA Intergenic Intergenic -206429 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha runt related transcription factor 1 protein-coding 1.395 1.074 1.845 1.384 1.368 0.667 0.749 3.477 0.282 0.416 0.216 3.034 4.811 0.031 0.067 0.423 0.417 0.879 2.795 3.122 2.613 3.018 0.845 0.338 0.502 0.145 0.231 6.776 5.570 1.038 0.792 0.116 0.265 0.356 0.258 0.201 0.277 nan 1.312 2.447 8.169 0.041 0.046 0.749 3.034 1.176 0.087 0.036 2575 chr9 139500420 139525220 + 0 NA Intergenic Intergenic -1187 NR_135288 401561 Hs.609301 NR_135288 ENSG00000279141 LINC01451 HCCAT4 long intergenic non-protein coding RNA 1451 ncRNA nan 0.702 1.229 0.425 0.296 0.188 0.356 0.214 0.091 0.089 0.104 0.126 1.324 0.141 0.053 0.627 1.155 0.303 0.634 2.785 2.352 nan 0.160 0.384 0.466 0.125 0.244 0.437 0.777 1.296 1.150 1.008 1.347 0.356 0.306 0.152 0.193 0.930 0.545 6.256 0.283 0.052 0.144 0.356 0.126 1.797 0.229 0.748 0.035 1675 chr21 35947589 35993124 + 0 NA intron (NM_004414, intron 1 of 3) L1M5|LINE|L1 15786 NM_001285389 1827 Hs.282326 NM_004414 ENSG00000159200 RCAN1 ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1 regulator of calcineurin 1 protein-coding 0.945 0.891 1.125 1.237 0.719 0.415 1.395 0.211 0.089 0.544 0.423 1.456 6.364 0.064 0.081 0.670 0.621 0.785 1.483 3.828 3.974 3.013 0.923 0.512 0.479 0.297 0.538 2.873 2.579 0.582 0.438 0.354 0.535 1.879 2.016 0.329 0.556 nan 1.009 5.912 3.598 0.436 0.174 1.395 1.456 0.083 0.391 0.102 0.241 728 chr13 79167507 79184078 + 0 NA exon (NM_006237, exon 2 of 2) exon (NM_006237, exon 2 of 2) 1903 NM_006237 5457 Hs.654522 NM_006237 ENSG00000152192 POU4F1 BRN3A|Oct-T1|RDC-1|brn-3A POU class 4 homeobox 1 protein-coding nan nan 0.680 0.726 0.618 0.443 1.152 0.111 0.059 0.292 0.156 1.040 1.366 0.052 0.068 3.090 4.335 0.370 0.454 1.899 1.588 0.929 0.283 0.328 0.371 0.703 0.975 0.477 0.544 1.063 1.177 0.698 1.221 0.281 0.214 0.157 0.459 0.885 0.493 0.396 0.858 0.017 2.400 1.152 1.040 0.093 0.690 0.256 0.065 695 chr13 23452514 23458939 + 0 NA intron (NR_138043, intron 2 of 2) MER50|LTR|ERV1 16594 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - brain abundant, membrane attached signal protein 1 pseudogene 1 pseudo 0.544 0.732 0.520 0.123 0.077 0.050 0.019 0.164 0.025 0.098 0.105 0.093 0.193 0.067 0.062 1.359 1.061 14.525 10.833 0.342 0.314 0.072 0.084 0.194 0.071 0.170 0.245 0.281 0.265 0.469 0.186 4.011 8.600 0.046 0.040 0.174 0.253 0.632 0.622 0.070 0.015 0.123 0.019 0.093 0.047 6.839 0.067 1405 chr2 15812026 15820204 + 0 NA Intergenic Intergenic -14791 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LINC01804 - long intergenic non-protein coding RNA 1804 ncRNA 0.608 0.523 0.650 0.248 0.135 0.138 0.047 0.052 0.059 0.072 0.124 0.029 1.793 0.028 0.077 0.305 0.210 0.285 0.654 0.283 0.329 0.236 0.096 0.164 0.102 0.180 0.299 0.332 nan 0.534 0.324 6.863 9.696 0.042 0.039 0.415 nan 0.270 0.399 0.429 0.133 0.052 0.049 0.047 0.029 0.024 0.050 2.733 0.114 1470 chr2 121624193 121659449 + 0 NA intron (NM_005270, intron 1 of 12) intron (NM_005270, intron 1 of 12) 86954 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 1.353 nan nan 0.063 0.179 0.100 2.175 0.172 0.064 0.058 0.085 0.085 1.081 0.037 0.075 0.548 0.562 0.313 0.354 1.229 1.403 0.152 0.102 0.606 0.625 0.510 0.732 2.720 2.277 0.901 0.935 0.270 0.365 0.149 0.121 0.364 0.658 0.591 0.397 2.601 0.452 0.054 0.066 2.175 0.085 0.643 0.023 0.112 0.179 1688 chr21 40718858 40722827 + 0 NA exon (NM_004965, exon 1 of 6) exon (NM_004965, exon 1 of 6) 205 NM_004965 3150 Hs.356285 NM_004965 ENSG00000205581 HMGN1 HMG14 high mobility group nucleosome binding domain 1 protein-coding 7.092 3.523 6.179 7.302 8.477 4.830 4.548 1.325 0.245 2.143 0.766 7.448 19.744 4.714 0.136 6.898 9.084 7.884 11.296 10.838 9.421 nan 2.886 15.988 16.586 5.029 nan 10.679 16.761 10.544 11.568 4.297 8.509 8.177 6.645 8.708 8.876 4.605 2.327 7.563 7.700 2.041 4.292 4.548 7.448 1.977 3.298 2.928 4.017 2329 chr7 148523941 148558127 + 0 NA intron (NM_001203248, intron 3 of 19) intron (NM_001203248, intron 3 of 19) 39567 NM_001203249 2146 Hs.444082 NM_004456 ENSG00000106462 EZH2 ENX-1|ENX1|EZH1|EZH2b|KMT6|KMT6A|WVS|WVS2 enhancer of zeste 2 polycomb repressive complex 2 subunit protein-coding 1.161 0.737 0.956 0.167 0.384 0.220 0.128 0.221 0.103 0.302 0.234 0.260 0.348 0.200 0.171 0.660 0.581 0.735 0.766 0.487 0.606 0.410 0.209 1.649 1.612 0.752 0.889 0.466 0.418 0.958 0.450 0.496 0.863 0.176 0.247 1.149 3.303 0.685 nan 0.088 0.140 0.044 0.146 0.128 0.260 0.060 0.065 0.331 0.752 1362 chr19 49953829 49958325 + 0 NA promoter-TSS (NM_001145396) promoter-TSS (NM_001145396) -396 NM_153329 126133 Hs.719998 NM_153329 ENSG00000161618 ALDH16A1 - aldehyde dehydrogenase 16 family member A1 protein-coding 6.778 3.299 6.080 3.986 10.318 5.950 4.562 2.692 0.820 2.652 1.093 4.465 9.241 5.531 0.239 5.905 5.610 6.309 9.801 10.060 8.706 14.347 6.098 16.217 18.352 7.290 8.570 8.539 12.524 12.889 12.213 3.193 4.427 6.850 10.034 6.987 9.702 5.330 2.419 5.250 5.574 1.592 2.542 4.562 4.465 1.973 3.099 1.696 3.394 1746 chr22 50326540 50333744 + 0 NA Intergenic Intergenic 17864 NM_001284317 79174 Hs.211282 NM_024324 ENSG00000184164 CRELD2 - cysteine rich with EGF like domains 2 protein-coding 1.225 0.879 nan 0.611 3.123 2.004 3.984 2.603 0.271 0.282 0.305 2.557 1.114 2.957 0.132 1.670 4.646 0.832 1.291 3.017 2.508 1.054 0.508 1.379 1.170 0.161 0.321 3.322 6.684 1.192 1.074 0.601 0.963 0.617 0.653 0.876 1.562 1.318 0.724 0.449 0.477 0.079 0.705 3.984 2.557 0.696 4.978 1.170 0.511 546 chr12 6471038 6494500 + 0 NA intron (NM_001159576, intron 1 of 11) intron (NM_001159576, intron 1 of 11) 1621 NM_001159576 6337 Hs.591047 NM_001038 ENSG00000111319 SCNN1A BESC2|ENaCa|ENaCalpha|SCNEA|SCNN1 sodium channel epithelial 1 alpha subunit protein-coding 1.061 nan nan 9.855 3.798 2.064 1.188 0.667 0.103 2.313 1.190 6.346 5.263 0.120 0.120 0.853 1.391 0.624 1.379 nan 9.449 8.342 2.417 3.650 3.811 0.208 0.506 4.181 4.951 0.457 0.213 1.411 2.246 2.738 2.433 0.847 nan 1.196 0.531 3.100 3.404 1.155 5.090 1.188 6.346 0.929 0.436 1.523 0.273 1990 chr5 71159847 71189040 + 0 NA Intergenic L1MA5A|LINE|L1 159453 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 1.100 nan 1.394 0.096 1.253 0.510 0.406 0.223 0.121 0.101 0.115 0.082 0.796 0.067 0.121 0.191 0.188 0.229 0.268 0.275 0.334 nan 0.745 0.127 0.136 0.591 nan 0.570 0.579 1.109 0.732 0.114 0.250 3.698 4.439 0.818 2.662 0.902 0.560 0.136 0.762 1.005 0.094 0.406 0.082 0.129 0.133 0.170 1.538 654 chr12 104606156 104622950 + 0 NA intron (NM_001093771, intron 1 of 16) intron (NM_001093771, intron 1 of 16) 4996 NM_001093771 7296 Hs.654922 NM_003330 ENSG00000198431 TXNRD1 GRIM-12|TR|TR1|TRXR1|TXNR thioredoxin reductase 1 protein-coding 0.762 1.679 nan 0.877 0.503 0.362 0.359 1.021 0.409 0.176 0.146 0.278 0.587 8.014 0.353 0.380 0.275 0.740 2.929 0.372 0.514 1.701 0.280 0.842 0.887 0.689 0.963 1.306 1.721 0.647 0.441 0.363 0.400 0.713 2.311 0.232 0.550 1.158 0.673 0.380 0.168 0.126 0.222 0.359 0.278 0.258 0.526 0.071 0.124 1283 chr19 30715781 30723809 + 0 NA Intergenic CpG -143505 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 5.493 0.388 0.522 0.065 3.283 1.887 3.153 0.057 0.160 0.041 0.052 0.831 0.444 0.498 0.075 0.247 0.267 0.271 0.453 0.198 0.181 0.144 0.082 0.171 0.152 3.921 6.483 0.101 0.160 nan 0.091 0.668 0.658 0.073 0.100 0.334 0.991 0.738 0.503 3.415 0.055 0.376 3.153 0.831 1.862 0.161 0.062 2282 chr7 91259998 91273374 + 0 NA Intergenic Intergenic 243348 NM_001301134 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding nan 0.964 nan 1.267 1.116 0.736 0.468 0.157 0.048 0.385 0.307 2.876 1.582 0.071 0.112 0.375 0.278 0.262 0.292 1.095 1.004 6.867 3.438 0.242 0.297 0.772 1.044 3.185 2.509 0.418 0.183 0.202 0.494 0.465 0.518 0.249 nan 1.190 1.067 1.366 0.212 0.071 0.077 0.468 2.876 0.051 1.787 0.111 0.249 2198 chr6 158878322 158901743 + 0 NA intron (NM_001007466, intron 6 of 12) MLT1A0|LTR|ERVL-MaLR -67436 NM_020823 57583 Hs.99145 NM_020823 ENSG00000146433 TMEM181 GPR178|KIAA1423 transmembrane protein 181 protein-coding nan 0.771 1.546 1.320 0.682 0.350 0.580 0.254 0.110 0.755 0.460 2.150 3.063 0.069 0.096 0.447 0.497 1.032 1.480 1.496 nan 4.140 1.539 0.379 0.390 0.461 0.568 2.876 3.188 0.851 0.579 0.298 0.502 2.707 3.469 0.799 nan 1.416 0.701 3.106 2.380 1.211 0.083 0.580 2.150 0.135 3.108 0.218 0.438 1737 chr22 42931442 42937212 + 0 NA Intergenic AluJo|SINE|Alu -15541 NR_104301 253190 Hs.728878 NM_014509 ENSG00000183569 SERHL2 dJ222E13.1 serine hydrolase-like 2 protein-coding 0.811 nan 0.830 1.624 0.468 0.225 0.136 0.050 0.143 0.753 0.171 0.554 0.504 0.094 0.169 0.428 0.488 0.327 0.567 0.297 0.338 4.902 1.305 0.175 0.201 0.280 nan 4.983 4.033 nan 0.196 0.307 0.354 1.345 1.276 0.196 0.642 1.033 0.774 0.263 0.760 0.129 0.136 0.554 9.020 0.069 0.108 447 chr11 47535256 47548220 + 0 NA intron (NM_001330272, intron 1 of 15) intron (NM_001330272, intron 1 of 15) 3802 NM_001172639 10658 Hs.595333 NM_006560 ENSG00000149187 CELF1 BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50 CUGBP, Elav-like family member 1 protein-coding nan 1.673 1.013 0.326 0.709 0.298 0.585 0.707 0.180 0.511 0.334 0.338 0.669 0.266 0.116 0.672 1.079 0.405 0.707 1.147 1.365 0.939 0.343 0.930 1.026 4.520 5.482 0.340 0.751 1.904 1.599 0.443 0.738 0.922 1.454 0.643 nan 0.980 0.673 0.181 0.296 0.264 0.141 0.585 0.338 0.606 0.094 0.183 0.229 1921 chr4 146738246 146747014 + 0 NA intron (NM_001306215, intron 8 of 14) intron (NM_001306215, intron 8 of 14) 117482 NM_001306215 152485 Hs.133916 NM_178835 ENSG00000151612 ZNF827 - zinc finger protein 827 protein-coding 1.653 0.787 2.423 0.258 0.290 0.290 0.162 0.321 0.074 0.411 0.246 0.437 0.225 0.098 0.050 0.319 0.831 0.309 0.538 0.955 0.841 0.344 0.159 0.131 0.211 0.720 1.167 0.601 0.590 2.519 2.421 0.172 0.335 0.179 0.189 0.465 0.957 0.782 0.647 0.019 0.152 0.021 3.913 0.162 0.437 0.444 0.150 0.034 0.480 169 chr1 145469445 145475328 + 0 NA 5' UTR (NM_001039888, exon 3 of 4) 5' UTR (NM_001039888, exon 3 of 4) 1878 NM_001039888 284615 Hs.620591 NM_001039888 ENSG00000272031 ANKRD34A ANKRD34 ankyrin repeat domain 34A protein-coding 3.447 nan 2.668 1.625 1.217 0.593 2.085 1.983 0.138 1.452 0.791 1.867 15.300 3.181 0.113 2.452 4.219 1.703 2.546 4.943 4.692 5.750 1.311 0.975 1.195 2.386 3.286 2.879 3.500 2.502 2.077 2.277 3.843 1.344 1.531 3.507 5.644 2.688 1.394 1.729 7.305 0.193 0.743 2.085 1.867 0.954 4.333 1.980 1.271 1933 chr5 294501 323843 + 0 NA intron (NM_001267558, intron 5 of 6) intron (NM_001267558, intron 5 of 6) 4881 NM_001242412 57491 Hs.50823 NM_020731 ENSG00000063438 AHRR AHH|AHHR|bHLHe77 aryl-hydrocarbon receptor repressor protein-coding 0.555 1.806 1.810 1.200 2.501 1.177 1.695 0.407 0.195 0.970 0.796 7.967 3.283 0.206 0.110 0.973 1.535 0.511 nan 8.160 7.159 2.638 0.822 0.778 0.888 0.434 0.856 nan 8.199 nan 0.502 0.720 1.158 0.258 0.227 0.147 0.218 1.946 nan 3.784 2.630 0.042 0.079 1.695 7.967 0.292 0.490 0.638 0.071 2082 chr6 19798988 19812324 + 0 NA promoter-TSS (NR_134651) promoter-TSS (NR_134651) -666 NR_134649 100506885 Hs.346489 NR_134649 ENSG00000228412 LOC100506885 - uncharacterized LOC100506885 ncRNA 2.332 nan 1.948 2.629 3.623 1.860 3.637 2.906 0.254 0.942 0.561 8.178 5.346 5.366 0.169 1.910 1.321 5.423 8.021 3.231 2.835 4.625 2.120 5.578 5.641 2.312 2.769 0.697 0.872 1.406 0.789 0.987 1.255 2.958 4.078 1.390 1.492 2.802 1.525 1.063 2.190 0.705 2.231 3.637 8.178 0.832 1.643 0.813 0.265 1502 chr2 177035486 177044060 + 0 NA non-coding (NR_110464, exon 4 of 4) non-coding (NR_110464, exon 4 of 4) 3084 NR_110468 401022 Hs.98661 NR_033979 ENSG00000224189 HAGLR HOXD-AS1|Mdgt HOXD antisense growth-associated long non-coding RNA ncRNA 1.967 1.452 0.874 1.348 2.145 1.016 3.770 0.053 0.131 1.517 0.742 5.465 3.929 0.199 0.076 4.755 5.969 0.588 1.101 1.244 1.218 2.637 1.098 3.509 3.619 0.806 1.317 2.426 3.139 7.159 10.427 3.331 6.497 2.160 1.453 0.315 0.575 1.376 0.571 3.572 1.120 0.356 1.943 3.770 5.465 0.445 0.014 3.372 0.044 214 chr1 157013017 157018628 + 0 NA promoter-TSS (NM_198236) promoter-TSS (NM_198236) -660 NM_198236 9826 Hs.516954 NM_014784 ENSG00000132694 ARHGEF11 GTRAP48|PDZ-RHOGEF Rho guanine nucleotide exchange factor 11 protein-coding nan nan 2.724 1.867 2.033 1.226 2.963 1.615 0.120 1.462 0.871 3.456 5.255 3.077 0.136 6.305 5.955 9.708 7.392 6.785 nan 4.388 2.024 2.488 2.581 2.461 3.141 5.137 7.385 2.705 2.183 7.217 10.161 2.138 1.507 3.000 3.510 2.210 0.796 1.109 3.334 0.270 0.518 2.963 3.456 0.296 2.533 3.267 0.840 1503 chr2 178071211 178080331 + 0 NA Intergenic Intergenic -1651 NM_001330247 220988 Hs.516539 NM_194247 ENSG00000170144 HNRNPA3 2610510D13Rik|D10S102|FBRNP|HNRPA3 heterogeneous nuclear ribonucleoprotein A3 protein-coding 5.181 3.831 4.328 4.168 6.321 3.344 3.493 2.071 0.336 2.046 1.008 3.431 6.921 2.330 0.100 4.760 3.605 5.728 7.743 4.793 4.550 5.362 4.985 13.461 14.269 4.144 4.931 10.474 15.509 8.563 9.897 4.287 6.449 4.268 5.367 8.525 6.960 2.177 1.174 3.632 1.777 1.003 2.153 3.493 3.431 1.405 1.070 2.520 2.070 2061 chr6 6926520 6948230 + 0 NA Intergenic AluSz|SINE|Alu -170455 NM_001168344 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 1.059 1.207 0.858 0.600 0.459 0.245 0.353 0.101 0.090 0.260 0.225 5.755 0.448 0.040 0.095 1.626 1.931 0.241 0.392 1.935 1.933 1.152 0.697 0.416 0.485 0.249 0.428 0.947 0.744 1.024 0.740 0.261 0.456 0.198 0.247 0.850 1.179 1.264 0.806 0.523 0.614 0.021 1.619 0.353 5.755 0.050 0.743 0.109 0.529 367 chr10 99077877 99097824 + 0 NA Intergenic Intergenic 6608 NM_012083 23401 Hs.140720 NM_012083 ENSG00000181274 FRAT2 - FRAT2, WNT signaling pathway regulator protein-coding 2.014 2.208 2.536 1.494 1.717 0.755 0.879 0.574 0.128 0.558 0.243 3.279 4.101 0.990 0.086 1.462 2.056 2.864 3.314 2.502 2.650 3.205 2.089 2.058 2.180 0.670 0.948 nan 5.136 1.527 1.875 1.176 1.598 1.494 1.645 1.094 1.351 1.393 0.812 0.942 1.805 0.291 0.780 0.879 3.279 0.182 1.556 0.258 0.306 1510 chr2 183987969 183991523 + 0 NA intron (NR_109856, intron 1 of 7) intron (NR_109856, intron 1 of 7) 663 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 5.541 3.622 3.637 6.060 4.022 2.302 3.888 2.048 0.090 2.277 1.417 4.162 10.469 3.207 0.113 5.935 6.828 5.184 8.330 7.934 6.206 8.953 4.446 16.962 18.924 nan 7.778 16.584 22.569 9.028 10.201 5.113 7.450 5.007 5.097 7.849 7.789 3.405 1.944 3.470 1.983 0.622 2.014 3.888 4.162 0.979 2.705 2.233 1.570 469 chr11 65055098 65081514 + 0 NA Intergenic AluSx1|SINE|Alu -13983 NM_006779 10435 Hs.343380 NM_006779 ENSG00000149798 CDC42EP2 BORG1|CEP2 CDC42 effector protein 2 protein-coding nan 0.771 3.184 0.233 0.310 0.133 0.441 0.733 0.195 0.101 0.119 0.122 0.525 0.174 0.119 0.578 0.665 0.352 0.660 0.858 0.934 0.609 0.253 0.489 0.521 0.567 0.909 0.441 0.518 1.224 0.984 0.320 0.426 0.791 0.792 0.619 1.799 0.410 0.312 0.274 0.155 0.374 0.481 0.441 0.122 0.413 0.050 0.052 0.591 588 chr12 24680693 24719130 + 0 NA intron (NM_001261414, intron 1 of 16) HAL1|LINE|L1 15613 NM_001261414 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box 5 protein-coding nan nan nan 0.582 0.960 0.435 0.522 0.066 0.059 0.207 0.183 0.441 1.066 3.882 0.158 0.355 0.347 0.289 0.407 1.474 1.292 0.218 0.107 0.725 0.797 0.275 0.356 0.548 0.760 0.570 0.369 0.187 0.421 1.711 2.099 1.431 2.911 0.603 0.530 0.030 0.341 0.387 0.400 0.522 0.441 0.023 0.135 0.114 0.196 749 chr13 115044497 115048979 + 0 NA promoter-TSS (NM_080687) promoter-TSS (NM_080687) -321 NM_080687 65110 Hs.533855 NM_023011 ENSG00000169062 UPF3A HUPF3A|RENT3A|UPF3 UPF3 regulator of nonsense transcripts homolog A (yeast) protein-coding 5.556 6.111 6.993 11.102 6.355 3.642 11.293 2.805 0.686 2.061 1.211 8.618 14.801 4.960 0.189 13.216 12.916 6.588 9.856 11.155 10.647 11.892 5.516 8.592 9.050 1.529 1.929 9.894 13.565 9.459 9.986 6.318 10.815 10.754 12.180 10.035 7.843 1.632 0.843 11.802 12.229 2.354 6.678 11.293 8.618 2.141 4.330 4.281 2.344 1925 chr4 168918719 168934045 + 0 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -87306 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding nan nan nan 0.132 3.576 1.516 0.067 0.101 0.134 0.082 0.091 0.155 0.197 0.029 0.074 0.201 0.179 0.256 0.349 0.184 0.197 0.092 0.036 0.165 0.140 0.155 0.180 0.217 0.210 0.300 0.117 0.146 0.221 0.041 0.081 0.135 0.188 0.304 0.224 0.023 0.228 0.067 0.155 0.012 0.040 0.045 0.048 304 chr1 229475846 229479395 + 0 NA intron (NM_145257, intron 2 of 3) intron (NM_145257, intron 2 of 3) 1068 NM_145257 126731 Hs.585011 NM_145257 ENSG00000154429 CCSAP C1orf96|CSAP centriole, cilia and spindle associated protein protein-coding 6.193 5.080 6.310 5.508 5.575 2.794 4.572 1.604 0.315 3.299 2.118 6.473 8.810 3.422 0.138 8.308 7.806 13.519 15.558 14.160 10.171 6.448 2.223 8.239 8.135 4.560 5.452 5.221 9.748 3.039 4.020 2.283 4.265 4.563 2.833 5.184 7.285 3.155 1.606 2.973 2.234 1.148 3.617 4.572 6.473 1.456 2.513 1.709 1.424 2475 chr9 4015991 4158650 + 0 NA intron (NM_001042413, intron 4 of 10) intron (NM_001042413, intron 4 of 10) 64863 NM_152629 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 0.686 2.237 0.733 0.105 0.294 0.139 0.258 0.469 0.132 0.145 0.147 0.137 0.392 0.103 0.091 0.223 0.155 5.779 9.989 0.342 0.359 0.161 0.084 0.241 0.277 1.107 1.544 0.288 0.300 0.428 0.199 0.175 0.279 0.262 0.329 0.096 nan 0.855 0.891 0.093 0.167 0.040 0.062 0.258 0.137 0.061 0.144 0.062 0.022 518 chr11 113642587 113654309 + 0 NA Intergenic LTR5A|LTR|ERVK -2070 NM_001101389 644672 Hs.705360 NM_001101389 ENSG00000228607 CLDN25 - claudin 25 protein-coding 1.108 1.197 1.173 0.747 0.875 0.564 0.612 0.300 0.137 0.807 0.349 0.592 2.176 0.633 0.091 6.039 nan 2.253 3.142 1.642 1.533 1.853 0.666 1.270 1.307 1.360 nan 1.435 1.676 1.180 1.173 1.757 2.859 0.609 0.769 0.698 1.172 1.835 1.222 0.505 0.303 0.089 0.249 0.612 0.592 0.314 0.347 1.152 0.210 170 chr1 145506485 145508924 + 0 NA exon (NM_005105, exon 1 of 6) exon (NM_005105, exon 1 of 6) 147 NM_005105 9939 Hs.591455 NM_005105 ENSG00000265241 RBM8A BOV-1A|BOV-1B|BOV-1C|C1DELq21.1|DEL1q21.1|MDS014|RBM8|RBM8B|TAR|Y14|ZNRP|ZRNP1 RNA binding motif protein 8A protein-coding 9.091 6.289 7.351 8.348 7.878 3.822 11.342 5.827 0.717 5.318 3.236 8.082 24.989 6.868 0.265 14.167 9.101 15.356 21.015 16.824 16.915 13.792 8.372 22.935 24.727 8.847 10.905 12.209 18.430 10.926 10.486 15.603 18.092 6.990 9.207 11.242 11.656 6.561 3.488 7.617 9.977 1.396 3.476 11.342 8.082 2.394 7.527 7.643 4.332 1840 chr3 169528530 169532624 + 0 NA promoter-TSS (NM_001172779) promoter-TSS (NM_001172779) -3 NM_001172779 151827 Hs.591289 NM_153353 ENSG00000171757 LRRC34 - leucine rich repeat containing 34 protein-coding 5.152 4.414 2.426 6.462 5.031 2.187 2.246 1.002 0.197 3.299 1.403 6.096 3.562 0.426 0.042 1.513 2.483 0.301 0.184 7.760 7.052 17.538 4.811 0.573 0.673 0.787 0.982 nan 10.645 nan 9.578 1.327 2.491 11.027 7.749 3.938 3.148 4.927 3.001 6.903 2.728 1.816 0.816 2.246 6.096 0.875 2.702 0.504 3.400 351 chr10 23477423 23491150 + 0 NA Intergenic CpG 2826 NM_178161 256297 Hs.351503 NM_178161 ENSG00000168267 PTF1A PACA|PAGEN2|PTF1-p48|bHLHa29 pancreas specific transcription factor, 1a protein-coding 0.348 0.461 0.468 0.065 5.504 3.131 0.103 0.125 0.153 0.080 0.095 0.061 0.258 0.064 0.060 0.195 0.092 0.093 0.172 1.253 0.972 0.150 0.093 0.104 0.069 0.095 0.169 0.101 0.140 0.159 0.097 0.040 0.067 0.025 0.040 0.084 0.120 0.138 0.152 0.161 0.503 0.014 0.011 0.103 0.061 0.044 0.007 0.027 470 chr11 65147831 65155274 + 0 NA promoter-TSS (NM_001278251) promoter-TSS (NM_001278251) -380 NM_001278251 283130 Hs.661604 NM_182556 ENSG00000162241 SLC25A45 - solute carrier family 25 member 45 protein-coding nan 3.947 2.644 4.616 3.978 2.087 3.020 2.375 0.496 2.211 0.693 4.628 10.716 3.612 0.196 3.398 5.713 4.517 8.700 8.675 7.520 7.353 2.584 6.126 7.216 4.053 5.417 7.589 8.944 4.757 4.578 2.693 3.602 4.090 4.880 1.002 2.333 3.399 1.674 5.090 4.022 0.908 1.292 3.020 4.628 1.208 2.679 1.956 0.497 1157 chr18 19836077 19856264 + 0 NA Intergenic Intergenic 96772 NM_005257 2627 Hs.514746 NM_005257 ENSG00000141448 GATA6 - GATA binding protein 6 protein-coding 0.530 0.714 0.724 0.161 0.462 0.295 0.273 0.082 0.064 0.078 0.077 0.077 0.275 0.022 0.095 0.401 0.269 0.247 0.485 0.268 0.312 4.133 1.222 0.281 0.294 0.078 0.177 0.093 0.085 0.375 0.169 0.205 0.196 0.096 0.191 0.208 0.517 0.379 0.421 0.019 0.044 0.019 0.031 0.273 0.077 0.019 0.025 0.054 0.067 318 chr1 245019029 245033092 + 0 NA intron (NM_004501, intron 1 of 13) intron (NM_004501, intron 1 of 13) 1767 NM_004501 3192 Hs.106212 NM_004501 ENSG00000153187 HNRNPU HNRNPU-AS1|HNRPU|SAF-A|SAFA|U21.1|hnRNP U heterogeneous nuclear ribonucleoprotein U protein-coding nan 5.290 nan 5.597 5.611 3.076 3.941 2.572 0.286 2.974 1.441 4.202 5.702 3.669 0.194 4.220 4.020 6.640 9.439 7.888 7.519 6.091 2.940 11.772 12.522 3.190 3.843 3.920 5.847 4.344 5.014 1.513 2.917 4.468 4.769 5.942 5.868 2.392 1.399 3.074 1.817 1.059 1.906 3.941 4.202 0.820 1.916 0.803 1.867 2018 chr5 137666374 137675773 + 0 NA intron (NM_001318098, intron 1 of 13) intron (NM_001318098, intron 1 of 13) -2151 NM_001135647 51307 Hs.54056 NM_016605 ENSG00000120709 FAM53C C5orf6 family with sequence similarity 53 member C protein-coding 3.446 2.140 nan 1.652 3.274 1.920 1.402 1.801 0.154 1.133 0.550 3.411 6.243 2.608 0.123 2.242 2.818 3.718 5.195 4.047 4.894 4.235 3.402 8.632 9.227 2.743 3.472 4.079 5.333 4.588 4.228 3.483 4.765 4.448 5.718 3.338 4.506 1.362 0.762 0.756 2.120 0.816 1.090 1.402 3.411 0.871 1.514 1.293 1.319 1434 chr2 45150857 45174316 + 0 NA Intergenic CpG 6060 NR_103785 100506108 Hs.503113 NR_103785 ENSG00000236502 SIX3-AS1 SIX3OS SIX3 antisense RNA 1 ncRNA 2.355 nan 2.428 0.675 1.307 0.767 1.658 0.095 0.069 0.403 0.194 1.653 2.895 3.017 0.122 0.298 0.222 1.574 2.005 nan 3.161 1.376 0.559 1.445 1.624 0.506 0.833 1.736 2.252 1.187 1.332 0.193 0.319 2.346 1.920 4.165 nan nan 0.682 0.470 0.747 1.216 0.206 1.658 1.653 0.224 0.475 0.034 3.804 254 chr1 183498035 183506156 + 0 NA intron (NM_001331007, intron 9 of 23) intron (NM_001331007, intron 9 of 23) 57644 NM_001190789 4688 Hs.587558 NM_000433 ENSG00000116701 NCF2 NCF-2|NOXA2|P67-PHOX|P67PHOX neutrophil cytosolic factor 2 protein-coding nan nan 1.230 0.172 0.300 0.177 0.137 0.423 0.158 0.210 0.203 0.088 0.316 0.143 0.171 0.661 0.701 10.427 2.495 0.466 nan 0.443 0.252 nan 0.663 0.862 1.254 0.425 0.378 0.534 0.270 0.997 1.844 0.177 0.293 0.466 nan 0.556 0.530 0.041 0.151 0.116 0.077 0.137 0.088 0.072 0.025 0.444 0.168 966 chr16 49525070 49535099 + 0 NA intron (NM_001330533, intron 5 of 5) MIRb|SINE|MIR 22412 NR_144553 1596 Hs.684517 NR_144553 ADAM3B CYRN2 ADAM metallopeptidase domain 3B (pseudogene) pseudo 1.242 0.713 3.033 0.061 0.406 0.224 1.530 0.066 0.017 0.047 0.048 0.155 0.195 0.066 0.049 0.464 0.643 0.117 0.079 1.854 2.048 0.551 0.278 0.158 0.135 2.572 2.988 0.339 0.536 5.792 6.937 0.378 0.331 1.172 0.897 0.741 0.855 0.895 0.595 0.050 0.398 0.458 0.268 1.530 0.155 2.648 0.041 0.069 0.330 1 chr1 933631 938358 + 0 NA promoter-TSS (NM_021170) promoter-TSS (NM_021170) -442 NM_001142467 57801 Hs.154029 NM_021170 ENSG00000188290 HES4 bHLHb42 hes family bHLH transcription factor 4 protein-coding 8.138 nan 11.693 3.582 2.516 1.529 2.751 5.584 0.729 0.711 0.104 0.197 8.566 11.414 0.185 5.246 7.143 9.759 16.993 1.883 1.049 3.137 2.028 7.221 7.353 6.115 nan nan 15.409 nan 1.592 2.869 2.837 3.217 2.550 0.565 1.285 0.353 0.310 7.435 1.127 0.507 30.773 2.751 0.197 2.317 0.278 0.707 0.441 241 chr1 170630823 170648095 + 0 NA intron (NM_006902, intron 1 of 4) intron (NM_006902, intron 1 of 4) 6146 NM_022716 5396 Hs.283416 NM_006902 ENSG00000116132 PRRX1 AGOTC|PHOX1|PMX1|PRX-1|PRX1 paired related homeobox 1 protein-coding nan nan nan 0.195 0.231 0.087 0.821 5.155 0.476 0.137 0.211 0.076 1.449 0.056 0.104 0.403 0.292 0.942 1.185 nan 0.453 0.089 0.066 0.083 0.100 5.660 7.796 0.319 0.324 1.209 1.213 0.542 0.867 0.073 0.076 0.362 nan 0.263 0.392 0.032 0.320 0.016 0.018 0.821 0.076 0.006 0.089 0.125 0.298 2186 chr6 143262983 143269989 + 0 NA promoter-TSS (NM_006734) promoter-TSS (NM_006734) -148 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding nan 4.560 nan 2.834 0.482 0.161 2.668 5.698 0.219 1.392 0.458 4.273 12.573 7.190 0.244 5.365 8.873 8.273 13.278 4.487 2.505 0.961 0.225 8.327 8.304 2.221 2.814 1.705 4.435 1.967 2.922 2.518 5.609 0.151 0.232 0.622 1.203 0.094 0.188 7.560 3.090 0.040 3.395 2.668 4.273 0.945 3.663 2.594 0.463 1459 chr2 99384132 99393911 + 0 NA promoter-TSS (NR_126337) promoter-TSS (NR_126337) -660 NR_126337 101927070 Hs.469395 NR_126337 LOC101927070 - uncharacterized LOC101927070 ncRNA 1.370 2.039 5.252 2.247 0.716 0.541 0.381 0.068 0.016 0.864 0.458 1.950 6.762 0.022 0.071 1.837 1.928 0.544 0.821 1.911 1.574 4.871 1.394 1.125 1.052 0.763 1.342 4.015 3.710 1.893 2.055 1.203 1.435 2.346 2.910 0.194 0.288 2.378 1.367 1.096 1.052 0.323 0.385 0.381 1.950 0.619 3.810 0.414 0.026 943 chr16 25366959 25383319 + 0 NA Intergenic LTR33|LTR|ERVL -106284 NM_001012981 342357 Hs.513451 NM_001012981 ENSG00000155592 ZKSCAN2 ZNF694|ZSCAN31|ZSCAN34 zinc finger with KRAB and SCAN domains 2 protein-coding 0.387 0.445 nan 0.082 0.204 0.157 0.101 0.059 0.019 0.038 0.060 0.110 0.275 0.060 0.071 4.742 4.015 0.104 0.101 0.151 0.140 nan 0.065 0.322 0.338 0.154 0.292 0.481 0.454 0.224 0.110 2.531 2.953 0.065 0.104 0.129 0.180 0.159 0.331 0.020 0.049 0.024 0.044 0.101 0.110 0.006 0.031 4.170 0.046 2008 chr5 93208698 93251595 + 0 NA intron (NR_028080, intron 4 of 8) intron (NR_028080, intron 4 of 8) -152837 NM_153216 134187 Hs.678995 NM_153216 ENSG00000248483 POU5F2 SPRM-1 POU domain class 5, transcription factor 2 protein-coding nan 8.440 0.791 0.129 0.934 0.425 7.579 0.178 0.045 0.268 0.173 0.006 0.427 0.585 0.085 0.229 0.153 0.184 0.245 0.522 0.489 4.044 2.314 0.125 0.129 0.569 0.771 0.403 0.434 0.500 0.182 0.096 0.142 12.593 17.140 0.217 nan 3.199 1.647 0.054 0.567 3.852 0.111 7.579 0.006 0.014 0.458 0.016 0.155 932 chr16 4320399 4324057 + 0 NA intron (NM_003223, intron 1 of 6) CpG 773 NM_003223 7023 Hs.513305 NM_003223 ENSG00000090447 TFAP4 AP-4|bHLHc41 transcription factor AP-4 protein-coding 7.821 nan 7.821 10.535 7.024 3.768 5.760 2.509 0.438 5.025 1.936 9.654 14.877 5.158 0.079 11.641 9.692 3.208 4.445 11.350 8.878 14.271 5.636 11.297 11.426 4.543 nan 10.599 15.072 15.420 20.063 3.147 5.153 9.981 7.610 11.168 10.042 4.498 2.429 6.602 7.705 2.148 4.941 5.760 9.654 2.599 3.731 3.055 4.848 710 chr13 50150773 50174324 + 0 NA Intergenic Intergenic -2829 NM_018191 55213 Hs.508021 NM_018191 ENSG00000136144 RCBTB1 CLLD7|CLLL7|GLP|RDEOA RCC1 and BTB domain containing protein 1 protein-coding 1.336 nan nan 0.627 0.354 0.143 0.349 0.413 0.144 0.245 0.163 0.686 0.562 0.341 0.076 2.166 1.835 0.750 0.725 1.434 1.399 nan 0.596 0.818 0.778 0.483 0.700 1.077 1.438 0.850 0.639 1.869 2.986 0.336 0.289 2.074 nan 0.389 0.280 0.281 0.516 0.044 0.170 0.349 0.686 0.166 0.156 1.564 0.905 1023 chr17 16881037 16887943 + 0 NA Intergenic L2a|LINE|L2 -9088 NM_012452 23495 Hs.158341 NM_012452 ENSG00000240505 TNFRSF13B CD267|CVID|CVID2|IGAD2|RYZN|TACI|TNFRSF14B TNF receptor superfamily member 13B protein-coding 0.820 0.656 2.203 0.241 0.230 0.116 0.287 0.022 0.047 0.070 0.123 0.069 0.392 0.047 0.036 0.493 0.456 0.197 nan 1.673 1.199 4.586 0.813 0.135 0.144 0.149 0.301 0.515 0.570 nan 1.319 0.149 0.192 0.959 1.122 0.377 0.606 0.471 0.311 0.024 0.077 0.125 0.287 0.069 0.506 6.466 0.043 0.108 919 chr16 2052661 2073177 + 0 NA Intergenic AluSx1|SINE|Alu -3097 NM_178167 90850 Hs.343828 NM_178167 ENSG00000167962 ZNF598 - zinc finger protein 598 protein-coding 2.197 nan 2.903 1.099 0.758 0.474 1.309 0.464 0.165 0.774 0.397 0.957 2.062 0.864 0.099 1.657 1.413 0.669 1.053 1.393 1.363 nan 1.017 1.881 1.787 1.307 nan 1.562 2.133 2.889 3.511 0.588 0.823 1.287 1.518 2.485 3.764 1.491 1.031 0.721 1.757 0.245 0.475 1.309 0.957 0.666 0.910 0.180 1.379 1553 chr2 238599524 238644777 + 0 NA intron (NM_001137551, intron 2 of 11) intron (NM_001137551, intron 2 of 11) 21343 NM_001137553 9208 Hs.471779 NM_004735 ENSG00000124831 LRRFIP1 FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP LRR binding FLII interacting protein 1 protein-coding 1.122 nan 2.394 2.201 1.240 0.588 1.126 0.503 0.130 1.164 0.557 1.684 1.533 0.271 0.106 0.987 1.326 0.563 1.070 0.852 0.790 2.347 0.838 0.679 0.639 0.850 1.143 3.032 nan 0.647 0.436 0.748 1.169 1.536 2.338 0.648 1.339 1.240 0.685 0.582 0.606 0.385 0.368 1.126 1.684 0.088 1.045 0.354 0.175 1644 chr20 58394378 58415685 + 0 NA intron (NM_001199505, intron 8 of 12) intron (NM_001199505, intron 8 of 12) 103687 NM_014258 10388 Hs.202676 NM_014258 ENSG00000196074 SYCP2 SCP-2|SCP2 synaptonemal complex protein 2 protein-coding 1.640 2.748 0.866 1.082 0.615 0.308 0.228 0.139 0.068 0.220 0.176 3.261 0.641 0.092 0.076 0.743 nan 0.104 0.219 2.369 2.552 1.957 0.551 0.402 0.428 0.595 1.123 4.580 5.154 0.697 0.567 0.483 0.544 0.089 0.098 0.114 0.178 0.871 0.831 0.648 2.983 0.013 0.045 0.228 3.261 0.332 0.134 0.103 0.070 1159 chr18 22000401 22016815 + 0 NA intron (NM_018439, intron 2 of 10) intron (NM_018439, intron 2 of 10) 1999 NM_018439 55364 Hs.515317 NM_018439 ENSG00000154059 IMPACT RWDD5 impact RWD domain protein protein-coding 1.674 1.213 1.472 1.526 0.744 0.304 0.941 0.359 0.118 0.627 0.420 0.518 1.287 0.561 0.118 1.613 1.327 0.294 nan 1.042 1.053 5.493 2.054 0.991 0.938 1.280 1.593 1.037 1.302 2.056 1.907 0.513 0.603 2.325 2.346 1.294 1.650 3.131 1.818 0.567 0.395 0.398 0.434 0.941 0.518 0.431 0.569 0.181 0.702 2006 chr5 92953228 92959710 + 0 NA promoter-TSS (NR_031754) promoter-TSS (NR_031754) 25 NR_031754 100313887 NR_031754 ENSG00000113391 MIR2277 mir-2277 microRNA 2277 ncRNA nan 7.666 2.053 1.086 2.821 1.228 4.015 1.128 0.173 1.107 0.585 4.120 7.344 0.188 0.778 1.225 1.541 2.047 2.773 1.746 3.534 2.172 0.150 0.247 2.404 2.823 2.107 5.159 2.157 2.712 0.320 0.439 7.581 7.321 1.518 nan 1.867 1.312 1.686 2.219 1.939 0.565 4.015 0.240 2.035 0.260 0.553 208 chr1 156297464 156315912 + 0 NA promoter-TSS (NM_144627) promoter-TSS (NM_144627) -417 NM_144627 128229 Hs.534539 NM_144627 ENSG00000163467 TSACC C1orf182|SIP|SSTK-IP TSSK6 activating cochaperone protein-coding nan nan 1.606 1.017 1.175 0.582 1.073 0.616 0.209 0.943 0.439 0.748 5.377 0.843 0.171 1.475 1.290 1.488 2.090 1.650 nan 2.230 0.774 1.316 1.394 1.438 1.912 2.292 2.474 1.948 1.824 1.468 2.421 1.065 1.351 1.842 5.098 1.211 0.568 0.487 1.147 0.301 0.345 1.073 0.748 0.357 0.573 0.783 1.329 1511 chr2 185306309 185319531 + 0 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 69218 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 0.986 1.033 1.029 0.147 0.313 0.123 0.125 0.175 0.121 0.155 0.121 0.082 0.254 0.033 0.080 0.433 0.511 0.290 0.425 0.239 0.308 0.457 0.139 0.444 0.355 nan 1.256 0.621 0.571 1.165 0.712 0.132 0.284 0.042 0.065 3.018 nan 0.354 0.349 0.038 0.061 0.022 0.709 0.125 0.082 0.146 0.031 0.074 2.322 2292 chr7 102064020 102075985 + 0 NA Intergenic Intergenic -3975 NM_001126340 80228 Hs.363308 NM_032831 ENSG00000160991 ORAI2 C7orf19|CBCIP2|MEM142B|TMEM142B ORAI calcium release-activated calcium modulator 2 protein-coding nan 0.941 2.162 0.690 0.816 0.217 1.407 0.499 0.149 0.445 0.305 0.704 1.633 1.327 0.155 3.369 5.561 0.760 1.242 1.319 1.347 1.703 0.643 0.571 0.663 0.664 1.053 0.934 1.356 1.431 1.477 2.416 3.502 1.444 1.280 1.275 nan 1.697 0.974 0.506 1.867 0.300 1.686 1.407 0.704 0.202 0.541 3.221 0.218 2196 chr6 157796789 157803849 + 0 NA Intergenic L1MC5|LINE|L1 -2238 NM_153746 79683 Hs.596214 NM_024630 ENSG00000175048 ZDHHC14 NEW1CP zinc finger DHHC-type containing 14 protein-coding nan 1.851 5.605 4.606 2.975 1.656 3.917 0.881 0.137 1.312 0.602 3.672 7.902 2.815 0.148 1.961 3.324 2.258 3.213 5.994 nan 10.283 3.150 2.975 3.022 0.854 1.275 5.935 6.169 2.930 3.485 0.825 2.247 6.249 6.608 2.055 nan 2.934 1.255 2.570 4.775 1.587 1.314 3.917 3.672 0.813 8.043 0.801 1.015 1262 chr19 12880074 12918971 + 0 NA Intergenic Intergenic 1580 NR_049864 100847071 NR_049864 ENSG00000263800 MIR5684 - microRNA 5684 ncRNA 4.994 2.753 3.803 2.957 2.524 1.168 3.006 2.163 0.373 1.441 0.688 2.725 2.185 3.281 0.129 2.417 2.979 2.728 4.145 4.737 4.525 6.959 3.363 4.338 4.541 2.271 3.265 4.084 6.073 4.575 4.192 1.033 1.593 4.431 4.343 3.497 6.013 2.987 1.467 4.005 1.964 1.518 1.216 3.006 2.725 1.355 2.629 0.856 2.114 1035 chr17 27275278 27281249 + 0 NA 5' UTR (NM_001033561, exon 1 of 15) 5' UTR (NM_001033561, exon 1 of 15) 245 NM_020889 57649 Hs.444173 NM_020889 ENSG00000109118 PHF12 PF1 PHD finger protein 12 protein-coding nan nan nan 3.153 8.360 4.398 4.407 3.539 0.242 1.834 1.021 6.149 15.383 8.357 0.244 7.510 6.804 6.690 9.489 7.864 7.196 6.772 3.081 10.187 10.830 4.605 5.367 9.144 14.165 13.666 11.888 6.113 8.838 3.539 4.579 5.101 7.250 2.551 1.178 6.861 6.584 1.152 4.243 4.407 6.149 2.768 2.856 5.139 3.889 1538 chr2 217846238 217854000 + 0 NA Intergenic Intergenic 114624 NR_130782 101928327 Hs.350698 NR_130782 ENSG00000223874 LINC01921 - long intergenic non-protein coding RNA 1921 ncRNA nan 1.196 nan 2.509 2.157 1.138 1.215 0.074 0.145 1.024 0.673 6.984 2.703 0.055 0.084 0.466 0.220 0.185 0.239 4.803 5.240 3.351 1.688 0.281 0.293 0.715 1.014 7.219 nan 0.380 0.166 0.316 0.383 0.705 0.668 0.296 0.320 1.975 0.921 2.377 0.379 0.209 0.114 1.215 6.984 0.127 2.584 0.076 0.112 637 chr12 68471716 68478020 + 0 NA Intergenic Intergenic 78653 NM_000619 3458 Hs.856 NM_000619 ENSG00000111537 IFNG IFG|IFI interferon gamma protein-coding 0.732 0.565 0.471 0.068 0.224 0.152 0.237 0.119 0.181 0.088 0.142 0.095 0.273 0.052 0.046 5.277 4.339 9.021 4.436 0.457 nan 0.113 0.062 3.567 3.224 0.298 0.504 0.410 0.361 0.408 0.115 0.975 2.400 0.081 0.152 0.127 0.231 0.657 0.804 0.018 0.191 0.039 0.237 0.095 0.030 0.032 0.704 0.039 462 chr11 64000636 64015486 + 0 NA promoter-TSS (NM_001135208) promoter-TSS (NM_001135208) -352 NM_004470 2286 Hs.227729 NM_004470 ENSG00000173486 FKBP2 FKBP-13|PPIase FK506 binding protein 2 protein-coding nan 3.111 2.173 6.109 3.665 1.981 2.939 1.255 0.207 3.006 1.111 4.941 10.449 3.753 0.124 3.773 5.947 2.761 4.615 5.716 5.318 6.902 2.679 6.994 7.320 2.153 3.215 9.147 11.571 3.127 3.184 1.947 3.901 4.125 4.475 1.932 2.936 2.754 1.403 3.385 4.121 1.010 2.037 2.939 4.941 0.981 3.567 2.280 1.084 1834 chr3 168285348 168324025 + 0 NA intron (NR_021485, intron 4 of 15) L1MA8|LINE|L1 35044 NR_030294 693136 NR_030294 ENSG00000207717 MIR551B MIRN551B|mir-551b microRNA 551b ncRNA 1.045 1.042 0.802 0.149 0.293 0.172 0.225 0.187 0.149 0.187 0.248 0.061 0.134 0.082 0.078 0.306 0.263 0.168 0.316 0.341 0.424 2.998 1.108 0.232 0.220 0.969 1.276 nan 0.623 nan 0.280 0.142 0.191 0.700 0.690 0.407 0.685 0.618 0.548 0.023 0.076 0.134 0.086 0.225 0.061 0.013 0.034 0.036 0.116 1758 chr3 21516959 21526769 + 0 NA intron (NM_024697, intron 4 of 7) AluSx1|SINE|Alu -62417 NR_046731 100874216 Hs.661720 NR_046731 ENSG00000225542 ZNF385D-AS1 - ZNF385D antisense RNA 1 ncRNA 0.524 0.715 0.573 0.027 0.113 0.033 0.025 0.361 0.066 0.048 0.065 0.161 0.074 0.227 0.119 5.612 4.950 0.144 0.111 0.101 0.049 0.184 0.176 0.640 0.805 0.254 0.171 nan 0.172 0.121 0.244 0.035 0.062 0.201 0.256 0.230 0.195 0.006 0.045 0.020 0.032 0.025 0.019 0.031 0.010 0.051 1161 chr18 22855783 22869956 + 0 NA intron (NM_015461, intron 3 of 7) intron (NM_015461, intron 3 of 7) 69345 NM_015461 25925 Hs.116935 NM_015461 ENSG00000198795 ZNF521 EHZF|Evi3 zinc finger protein 521 protein-coding 1.335 0.997 0.990 0.044 0.326 0.239 6.214 1.101 0.103 0.156 0.129 0.067 1.949 0.038 0.082 0.466 0.412 0.242 nan 3.122 3.225 0.214 0.142 0.143 0.148 0.903 0.963 0.321 0.455 0.764 0.560 0.285 0.627 0.444 0.499 0.298 0.636 1.353 1.313 3.392 1.403 0.061 0.033 6.214 0.067 0.501 0.029 0.301 0.357 976 chr16 53113091 53135559 + 0 NA intron (NM_025134, intron 1 of 38) intron (NM_025134, intron 1 of 38) 35380 NM_025134 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding nan nan nan 1.645 2.228 1.133 4.024 2.017 0.336 0.585 0.296 1.375 3.314 0.082 0.069 3.403 3.822 1.559 1.525 3.045 2.405 2.477 0.641 2.736 2.951 1.270 nan nan nan nan 3.521 1.295 1.717 2.479 2.594 0.615 nan nan 1.196 1.646 0.867 0.691 0.710 4.024 1.375 1.531 1.186 0.981 0.259 520 chr11 113944641 113971343 + 0 NA intron (NM_001018011, intron 2 of 6) intron (NM_001018011, intron 2 of 6) 26704 NM_001018011 7704 Hs.591945 NM_006006 ENSG00000109906 ZBTB16 PLZF|ZNF145 zinc finger and BTB domain containing 16 protein-coding 0.565 0.856 0.483 3.045 0.464 0.234 0.782 0.041 0.036 0.302 0.155 0.701 0.663 0.053 0.101 0.677 nan 0.112 0.162 0.880 0.813 0.663 0.180 0.112 0.114 0.286 nan 2.492 2.404 0.377 0.214 0.606 0.735 0.417 0.421 0.227 0.508 1.741 1.013 0.089 0.097 0.125 0.065 0.782 0.701 0.066 0.228 0.162 0.157 1796 chr3 125036529 125045329 + 0 NA intron (NM_021964, intron 3 of 8) AluY|SINE|Alu 53269 NM_021964 7707 Hs.592591 NM_021964 ENSG00000163848 ZNF148 BERF-1|BFCOL1|HT-BETA|ZBP-89|ZFP148|pHZ-52 zinc finger protein 148 protein-coding 1.125 nan 1.107 0.189 0.392 0.200 0.189 0.901 0.293 0.231 0.314 0.287 0.272 0.024 0.093 0.401 0.375 0.398 0.826 0.650 0.850 0.616 0.322 0.401 0.361 4.971 nan 0.287 0.370 1.386 0.929 0.215 0.378 0.163 0.182 0.648 1.473 0.356 0.340 0.442 0.141 0.054 0.640 0.189 0.287 0.034 0.023 0.079 0.180 1321 chr19 42235540 42307256 + 0 NA intron (NM_002483, intron 5 of 5) intron (NM_002483, intron 5 of 5) 11970 NM_002483 4680 Hs.466814 NM_002483 ENSG00000086548 CEACAM6 CD66c|CEAL|NCA carcinoembryonic antigen related cell adhesion molecule 6 protein-coding 0.860 2.659 0.722 1.960 5.285 2.760 0.104 0.059 0.087 0.449 0.202 2.365 4.357 0.054 0.120 0.248 0.147 0.097 0.131 0.304 0.376 1.896 0.494 0.221 0.219 0.210 0.384 4.671 4.884 0.410 0.147 0.160 0.222 2.449 2.702 0.194 0.335 3.450 1.710 6.017 2.497 0.805 0.036 0.104 2.365 0.035 0.262 0.045 0.069 612 chr12 54467431 54482608 + 0 NA intron (NR_026658, intron 1 of 2) intron (NR_026658, intron 1 of 2) 588 NR_026658 100240735 Hs.635297 NR_026658 ENSG00000250654 LOC100240735 - uncharacterized LOC100240735 ncRNA nan 0.811 0.707 0.046 0.335 0.138 0.202 0.085 0.138 0.074 0.158 0.095 0.303 0.120 0.062 nan 9.994 2.911 3.246 0.266 nan 0.170 0.130 1.771 1.704 0.379 nan 0.492 nan 0.367 0.160 5.716 9.477 0.785 0.445 1.104 3.199 0.287 0.419 0.241 0.774 0.399 0.031 0.202 0.095 0.136 0.027 6.956 0.654 2441 chr8 143472146 143495052 + 0 NA intron (NM_001291931, intron 1 of 10) intron (NM_001291931, intron 1 of 10) 1011 NM_145003 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 1.712 0.903 nan 0.941 0.790 0.468 0.571 0.111 0.091 0.240 0.154 1.507 2.738 0.304 0.056 1.302 1.831 0.488 0.659 nan 3.335 nan 0.421 1.093 0.980 0.562 0.876 1.335 1.998 0.800 0.745 0.902 1.352 0.970 1.048 0.525 0.598 0.920 0.736 4.983 0.962 0.187 0.243 0.571 1.507 0.476 0.737 0.453 0.184 2484 chr9 14236695 14264430 + 0 NA intron (NM_001190737, intron 2 of 10) intron (NM_001190737, intron 2 of 10) 63483 NM_001190737 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding nan nan 1.079 0.267 0.448 0.197 0.223 0.966 0.133 0.186 0.268 0.275 0.872 0.144 0.127 0.212 0.165 2.125 5.907 0.467 0.600 0.625 0.277 0.224 0.245 6.091 9.234 0.805 0.916 0.376 0.192 0.354 0.425 0.262 0.397 0.355 0.834 1.167 0.954 0.289 0.089 0.031 0.080 0.223 0.275 0.021 0.059 0.096 0.097 1941 chr5 2728474 2762778 + 0 NA TTS (NM_001134222) TTS (NM_001134222) 6143 NM_033267 153572 Hs.282089 NM_033267 ENSG00000170561 IRX2 IRXA2 iroquois homeobox 2 protein-coding 0.355 0.765 0.727 0.095 1.092 0.636 0.811 0.119 0.146 0.097 0.144 9.003 1.648 0.389 0.119 0.267 0.162 0.219 nan 6.451 5.907 0.071 0.040 0.048 0.040 0.128 0.264 nan 0.133 nan 2.042 0.862 1.713 0.048 0.077 0.178 0.188 0.131 nan 1.088 1.006 0.016 1.581 0.811 9.003 0.232 0.018 0.508 0.022 468 chr11 64900411 64903892 + 0 NA promoter-TSS (NM_032431) promoter-TSS (NM_032431) -148 NM_172230 84447 Hs.75859 NM_032431 ENSG00000162298 SYVN1 DER3|HRD1 synoviolin 1 protein-coding nan 4.827 4.598 7.227 5.266 3.268 4.579 2.962 0.279 2.953 1.117 6.864 12.995 5.670 0.170 9.848 11.479 7.840 11.878 12.141 14.184 11.355 9.269 13.126 15.290 4.662 5.680 10.339 17.142 7.904 8.010 8.608 12.524 7.635 10.057 6.802 5.465 4.824 2.271 5.793 5.109 1.792 2.860 4.579 6.864 1.305 3.880 3.800 2.057 981 chr16 71916379 71930678 + 0 NA Intergenic AluSz|SINE|Alu -4783 NM_001270976 9798 Hs.232194 NM_014761 ENSG00000182149 IST1 OLC1 IST1, ESCRT-III associated factor protein-coding 2.933 2.074 nan 3.459 3.194 1.859 2.254 1.204 0.326 0.998 0.569 2.411 5.356 2.680 0.180 2.484 2.804 2.504 3.319 3.565 3.111 3.642 1.409 6.401 6.679 1.183 1.805 2.634 4.126 3.940 4.018 1.194 2.415 1.764 1.703 2.415 2.752 1.642 0.850 1.057 2.564 0.613 1.452 2.254 2.411 0.961 1.474 1.019 0.922 888 chr15 72765182 72768598 + 0 NA promoter-TSS (NR_135678) promoter-TSS (NR_135678) 223 NM_005744 25820 Hs.268787 NM_005744 ENSG00000166233 ARIH1 ARI|HARI|HHARI|UBCH7BP ariadne RBR E3 ubiquitin protein ligase 1 protein-coding 6.948 6.905 6.640 5.191 10.280 4.412 7.276 5.640 0.565 4.436 1.771 8.955 16.454 5.136 0.123 8.653 10.263 12.618 16.404 12.534 11.927 10.138 7.963 19.415 20.900 7.011 8.581 9.564 17.077 15.914 18.341 6.231 10.642 6.600 5.630 11.854 8.656 4.412 2.466 3.557 6.235 0.582 2.899 7.276 8.955 1.653 5.426 2.573 1.839 2022 chr5 140696635 140706158 + 0 NA Intergenic Intergenic -1045 NM_005642 6879 Hs.438838 NM_005642 ENSG00000178913 TAF7 TAF2F|TAFII55 TATA-box binding protein associated factor 7 protein-coding nan 1.692 0.996 0.517 1.968 1.111 0.607 0.444 0.169 0.539 0.299 1.245 4.201 1.189 0.136 1.060 1.081 1.912 2.642 1.737 1.437 2.736 1.564 11.805 12.195 0.781 1.075 1.450 2.282 2.526 2.090 1.265 1.999 2.050 2.513 1.057 1.145 0.864 0.580 0.779 0.707 0.190 0.523 0.607 1.245 0.192 0.699 0.344 0.118 1081 chr17 43970903 43986777 + 0 NA intron (NM_001123066, intron 1 of 14) intron (NM_001123066, intron 1 of 14) 5691 NR_024560 100130148 Hs.669307 NR_024560 ENSG00000279685 MAPT-IT1 - MAPT intronic transcript 1 ncRNA 1.939 1.611 nan 3.037 7.885 4.214 1.913 0.168 0.050 2.912 1.198 2.073 2.156 0.808 0.113 1.573 1.620 0.285 0.401 7.360 nan 4.775 1.423 0.991 1.066 2.488 3.155 1.596 nan 4.672 3.999 1.180 1.798 4.301 3.452 0.737 1.453 3.717 1.845 2.383 0.510 1.069 2.613 1.913 2.073 1.318 1.128 0.514 0.131 596 chr12 31252322 31274294 + 0 NA Intergenic Intergenic -36527 NR_038927 100506660 Hs.586774 NR_038927 ENSG00000245614 DDX11-AS1 CONCR DDX11 antisense RNA 1 ncRNA 1.895 nan 1.994 4.041 0.835 0.328 0.877 0.168 0.052 1.671 0.663 3.414 2.442 0.133 0.108 0.511 0.757 1.054 1.555 8.430 7.069 2.746 0.968 2.064 2.196 0.316 0.432 4.753 5.000 2.828 3.217 0.729 1.259 7.686 5.866 0.588 1.145 3.279 1.725 3.396 3.181 2.852 1.232 0.877 3.414 0.411 2.366 0.495 0.485 616 chr12 54647665 54663691 + 0 NA intron (NM_012117, intron 1 of 4) intron (NM_012117, intron 1 of 4) -2308 NM_001127321 23468 Hs.349283 NM_012117 ENSG00000094916 CBX5 HEL25|HP1|HP1A chromobox 5 protein-coding nan 1.765 1.363 0.128 1.148 0.504 1.950 1.713 0.342 1.229 0.810 1.373 1.888 0.426 0.084 nan 2.432 0.750 1.668 2.165 nan 3.932 2.119 0.594 0.555 2.323 nan 2.378 nan 4.896 3.878 0.698 1.207 3.228 3.345 3.291 8.668 2.461 1.167 0.356 1.169 1.093 1.177 1.950 1.373 0.545 1.148 0.635 3.415 1155 chr18 19597934 19608315 + 0 NA Intergenic Intergenic 145805 NR_102763 100128893 Hs.514745 NR_102763 ENSG00000266010 GATA6-AS1 BM742401|locus5689 GATA6 antisense RNA 1 (head to head) ncRNA 0.582 0.653 1.068 0.673 0.145 0.062 0.444 0.101 0.078 0.167 0.140 0.073 0.322 0.042 0.060 0.417 0.215 0.273 0.497 0.280 0.377 9.617 2.350 0.369 0.291 0.087 0.188 0.104 0.116 0.912 0.787 0.183 0.223 0.284 0.164 0.404 0.638 0.548 0.591 0.043 0.051 0.019 0.069 0.444 0.073 0.069 0.029 0.133 389 chr11 690813 701229 + 0 NA promoter-TSS (NM_021008) promoter-TSS (NM_021008) -267 NM_001293634 10522 Hs.243994 NM_021008 ENSG00000177030 DEAF1 MRD24|NUDR|SPN|ZMYND5 DEAF1, transcription factor protein-coding 2.397 2.617 4.353 2.067 3.052 1.740 2.654 1.400 0.187 1.447 0.829 7.722 4.295 1.662 0.070 4.269 4.715 3.693 5.387 8.285 8.018 3.817 4.058 8.378 8.605 2.521 3.244 7.410 10.859 3.376 3.634 4.164 5.957 2.757 2.844 3.902 2.267 1.966 1.034 4.515 5.454 0.723 1.347 2.654 7.722 0.469 1.666 1.161 0.867 1242 chr19 373123 389846 + 0 NA Intergenic Intergenic -5471 NM_199202 51298 Hs.250002 NM_016585 ENSG00000105549 THEG CT56|THEG1 theg spermatid protein protein-coding 0.724 0.960 3.809 0.210 0.757 0.306 0.242 0.045 0.067 0.200 0.073 0.802 0.965 0.032 0.091 0.409 0.597 0.179 0.298 2.945 2.699 0.836 0.133 0.218 0.282 0.222 0.500 4.096 nan 0.872 0.786 0.352 0.410 0.531 0.791 0.897 1.562 1.775 1.077 1.353 1.123 0.040 0.099 0.242 0.802 0.569 0.085 0.302 0.200 2175 chr6 129671170 129686873 + 0 NA intron (NM_000426, intron 32 of 64) intron (NM_000426, intron 32 of 64) 352349 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 0.742 0.798 0.706 0.146 0.165 0.103 0.368 0.086 0.072 0.072 0.105 0.106 0.229 0.042 0.123 0.433 0.448 0.555 0.471 0.188 0.263 7.351 1.250 0.343 0.296 0.344 0.395 0.467 0.627 0.720 0.226 0.224 0.329 0.070 0.110 0.213 0.427 0.443 0.495 0.014 1.021 0.006 0.026 0.368 0.106 0.030 0.026 0.095 0.079 16 chr1 6404841 6455166 + 0 NA intron (NM_007274, intron 1 of 8) Tigger1|DNA|TcMar-Tigger -9239 NM_181865 11332 Hs.126137 NM_007274 ENSG00000097021 ACOT7 ACH1|ACT|BACH|CTE-II|LACH|LACH1|hBACH acyl-CoA thioesterase 7 protein-coding 1.427 nan 1.350 1.718 0.641 0.348 0.331 0.952 0.310 0.293 0.208 0.371 1.939 1.344 0.141 0.803 1.015 0.528 0.901 1.512 1.393 0.672 0.294 1.356 1.389 0.892 nan nan 4.593 nan 0.685 0.720 0.998 0.330 0.343 0.938 1.510 0.862 0.590 2.620 1.020 0.068 0.176 0.331 0.371 0.336 0.361 0.456 0.383 1565 chr20 649925 658457 + 0 NA intron (NM_033129, intron 1 of 1) intron (NM_033129, intron 1 of 1) 2632 NM_033129 85508 Hs.355284 NM_033129 ENSG00000215397 SCRT2 ZNF898B scratch family transcriptional repressor 2 protein-coding 1.994 2.182 0.494 0.297 0.731 0.247 1.618 0.088 0.033 1.103 0.601 0.070 2.393 0.088 0.059 10.622 12.765 0.164 0.157 0.641 0.509 0.700 0.200 0.224 0.167 3.126 3.540 0.285 0.302 5.359 5.991 3.409 5.421 0.161 0.192 2.629 2.437 0.231 0.192 0.962 0.094 0.033 0.046 1.618 0.070 2.120 0.155 2.530 0.201 1074 chr17 41320902 41324930 + 0 NA promoter-TSS (NR_110868) promoter-TSS (NR_110868) -71 NM_005899 4077 Hs.277721 NM_005899 ENSG00000188554 NBR1 1A1-3B|IAI3B|M17S2|MIG19 NBR1, autophagy cargo receptor protein-coding 5.169 5.542 3.299 9.050 8.812 4.445 2.582 4.840 0.481 4.359 1.969 4.347 11.906 3.586 0.183 7.513 9.402 7.118 10.798 10.912 nan 12.256 6.740 25.923 28.169 4.307 4.986 10.620 nan 12.184 12.854 4.765 4.953 9.762 10.466 9.179 11.186 4.539 2.578 4.328 6.812 1.139 3.249 2.582 4.347 1.898 3.415 2.695 3.320 1382 chr19 59068084 59076044 + 0 NA intron (NR_027334, intron 1 of 5) intron (NR_027334, intron 1 of 5) 1511 NR_027334 100131691 Hs.743767 NR_027334 ENSG00000267858 MZF1-AS1 - MZF1 antisense RNA 1 ncRNA 4.232 3.219 4.134 4.829 7.423 4.068 4.017 1.729 0.144 1.964 1.027 5.411 5.063 2.543 0.107 9.061 11.954 3.905 5.776 8.507 7.869 10.106 5.824 4.219 4.262 4.010 5.300 6.634 10.053 6.343 6.221 3.481 5.755 5.175 4.260 5.621 5.587 5.450 2.630 4.238 4.271 1.372 2.357 4.017 5.411 0.832 3.881 2.069 2.150 329 chr10 405373 421721 + 0 NA intron (NM_014974, intron 18 of 36) L1MC|LINE|L1 -85521 NR_106988 102465753 NR_106988 ENSG00000280494 MIR7641-2 B-ATF|hsa-mir-7641-2 microRNA 7641-2 ncRNA 0.612 0.719 0.919 2.030 0.794 0.421 0.779 0.275 0.148 0.153 0.106 1.818 4.511 0.073 0.055 0.433 0.486 1.351 2.735 1.512 1.691 4.750 1.451 0.188 0.129 0.437 0.638 0.816 1.254 0.168 0.201 0.209 0.386 1.667 1.555 0.202 0.274 0.192 0.152 0.752 1.637 0.525 1.130 0.779 1.818 0.150 0.186 0.164 0.127 850 chr15 31506185 31530273 + 0 NA intron (NM_001243538, intron 2 of 3) LTR12F|LTR|ERV1 4825 NM_001243538 283710 Hs.591097 NM_001243538 LOC283710 - uncharacterized LOC283710 protein-coding 1.132 nan nan 0.714 1.553 0.712 0.896 0.718 0.147 1.080 0.553 1.810 3.995 0.221 0.094 0.947 1.671 0.706 1.484 1.606 1.777 2.549 0.730 0.629 0.592 0.507 0.715 1.103 1.500 2.146 1.972 0.726 1.017 3.290 3.039 0.445 0.828 0.527 0.395 1.300 1.159 1.116 0.585 0.896 1.810 0.724 0.862 0.517 0.324 89 chr1 37934944 37983921 + 0 NA non-coding (NR_073092, exon 9 of 9) non-coding (NR_073092, exon 9 of 9) 7163 NR_049844 100847010 NR_049844 ENSG00000263675 MIR5581 - microRNA 5581 ncRNA 1.455 nan 1.854 1.731 0.721 0.308 0.687 0.919 0.211 0.749 0.403 1.442 1.433 0.643 0.171 0.830 1.299 1.232 1.851 1.341 1.382 nan 0.487 1.373 1.403 1.486 2.052 7.926 7.886 nan 0.933 1.122 1.906 0.567 0.598 0.945 1.935 1.359 nan 0.561 0.467 0.134 0.209 0.687 1.442 0.340 0.719 0.420 0.486 1422 chr2 25585157 25601821 + 0 NA Intergenic MER4E1|LTR|ERV1 -28030 NR_135490 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 1.278 1.279 1.560 1.169 0.606 0.269 0.546 0.156 0.097 1.747 0.799 0.442 2.792 0.199 0.144 0.643 0.988 0.808 1.217 1.303 1.350 2.310 0.770 1.214 1.256 0.752 1.289 1.993 nan 0.710 0.433 0.505 0.644 0.704 0.632 0.638 1.095 2.676 1.141 4.812 1.003 0.212 0.578 0.546 0.442 0.423 1.543 0.230 0.269 970 chr16 49887566 49894009 + 0 NA intron (NM_001271620, intron 1 of 7) CpG 1043 NM_001271620 23090 Hs.443715 NM_015069 ENSG00000102935 ZNF423 Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ zinc finger protein 423 protein-coding 5.283 3.210 6.683 0.980 0.993 0.447 8.093 0.105 0.101 0.073 0.077 0.388 0.859 1.331 0.058 0.305 0.500 0.123 0.281 2.955 2.430 2.400 0.707 0.298 0.196 2.697 4.175 3.208 5.941 6.260 9.668 0.334 0.642 1.859 0.954 1.947 2.986 0.538 0.383 0.078 0.139 0.771 2.248 8.093 0.388 3.188 0.002 0.186 0.287 1800 chr3 127307796 127320289 + 0 NA Intergenic MLT1F1|LTR|ERVL-MaLR -3158 NR_073375 4171 Hs.477481 NM_004526 ENSG00000073111 MCM2 BM28|CCNL1|CDCL1|D3S3194|DFNA70|MITOTIN|cdc19 minichromosome maintenance complex component 2 protein-coding 4.897 nan 2.780 2.611 3.906 2.135 2.675 3.278 0.504 3.108 1.374 2.916 3.694 1.405 0.063 3.497 3.290 3.211 5.268 5.728 5.326 9.997 4.888 6.120 6.237 3.568 nan 3.567 5.623 8.101 8.938 5.588 7.499 1.839 2.376 5.016 5.797 2.742 1.511 3.449 3.078 0.390 1.673 2.675 2.916 0.964 1.243 1.921 2.083 453 chr11 61591931 61604416 + 0 NA intron (NM_004265, intron 1 of 11) intron (NM_004265, intron 1 of 11) 2668 NM_004265 9415 Hs.502745 NM_004265 ENSG00000134824 FADS2 D6D|DES6|FADSD6|LLCDL2|SLL0262|TU13 fatty acid desaturase 2 protein-coding nan 2.539 2.130 3.826 9.409 5.253 3.254 2.436 0.338 2.394 1.498 4.223 5.362 2.757 0.158 6.242 8.211 2.895 4.050 12.748 10.928 4.691 1.934 3.423 3.721 2.994 3.653 5.122 6.446 4.067 4.722 4.124 8.678 3.110 2.645 2.329 3.509 2.401 1.465 6.291 3.667 1.217 1.704 3.254 4.223 1.363 1.713 3.927 1.640 1343 chr19 47352582 47371001 + 0 NA Intergenic AluSz|SINE|Alu -7539 NM_021575 1175 Hs.119591 NM_004069 ENSG00000042753 AP2S1 AP17|CLAPS2|FBH3|FBHOk|HHC3 adaptor related protein complex 2 sigma 1 subunit protein-coding 3.077 2.125 2.887 2.400 2.307 1.251 1.524 1.859 0.220 1.008 0.567 2.117 3.791 2.063 0.119 1.965 1.961 2.016 3.315 3.696 3.445 3.896 1.749 4.561 4.817 2.448 3.234 4.275 5.706 2.952 3.028 1.380 2.506 1.857 2.371 3.011 4.380 2.537 1.150 1.868 4.261 0.569 0.830 1.524 2.117 0.911 1.524 0.699 1.211 513 chr11 110580514 110585087 + 0 NA promoter-TSS (NM_001258415) promoter-TSS (NM_001258415) -27 NM_001258415 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 1.969 2.063 1.894 0.612 0.810 0.316 2.414 1.159 0.035 0.410 0.753 1.045 7.440 0.071 0.135 8.680 nan 1.932 2.096 4.549 4.019 2.054 0.605 9.838 9.804 2.828 nan 1.075 2.186 1.017 1.618 5.548 12.232 4.337 2.776 1.469 2.540 1.202 0.705 8.002 0.115 2.068 0.863 2.414 1.045 0.233 0.054 4.896 0.836 5 chr1 1180610 1210576 + 0 NA intron (NM_194457, intron 2 of 5) intron (NM_194457, intron 2 of 5) -13491 NM_001014980 388581 Hs.197613 NM_001014980 ENSG00000184163 FAM132A C1QDC2|C1QTNF12|CTRP12 family with sequence similarity 132 member A protein-coding 1.278 nan 1.743 1.614 0.700 0.379 0.403 0.460 0.193 0.382 0.280 0.408 1.551 0.659 0.117 0.868 1.143 0.876 1.468 2.400 2.515 0.948 0.292 3.065 2.992 0.935 nan nan 6.867 nan 0.767 0.761 1.148 0.299 0.424 0.839 1.107 0.713 0.513 0.436 0.749 0.067 0.783 0.403 0.408 0.313 0.403 0.235 0.297 1217 chr18 56881936 56899650 + 0 NA intron (NM_001012512, intron 1 of 2) intron (NM_001012512, intron 1 of 2) 3393 NM_001012513 2922 Hs.153444 NM_002091 ENSG00000134443 GRP BN|GRP-10|preproGRP|proGRP gastrin releasing peptide protein-coding nan 1.212 0.744 3.502 0.265 0.136 0.312 0.027 0.018 0.273 0.224 4.127 6.385 0.025 0.060 0.370 0.191 0.167 0.216 7.474 8.687 2.316 0.612 0.363 0.366 0.124 0.199 5.960 4.539 0.335 0.200 0.133 0.170 1.458 0.798 0.178 0.344 nan 2.022 0.351 0.181 0.385 0.081 0.312 4.127 0.044 1.021 0.022 0.035 1357 chr19 49135658 49142453 + 0 NA exon (NM_001352, exon 2 of 4) exon (NM_001352, exon 2 of 4) 1752 NM_001352 1628 Hs.414480 NM_001352 ENSG00000105516 DBP DABP D-box binding PAR bZIP transcription factor protein-coding 3.810 3.796 4.220 3.762 12.648 6.536 3.988 3.505 0.772 2.187 0.973 4.449 8.748 6.344 0.174 4.178 5.675 3.766 6.452 5.687 5.294 5.701 2.505 9.787 10.515 5.355 5.926 6.561 9.636 6.201 6.110 4.517 5.863 2.825 2.718 2.259 7.294 4.072 1.655 4.686 10.846 0.938 2.018 3.988 4.449 2.146 2.579 3.952 3.672 572 chr12 11987513 12016788 + 0 NA intron (NM_001987, intron 3 of 7) AluJb|SINE|Alu 199362 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 0.866 1.089 1.131 3.580 2.310 1.252 0.510 0.158 0.072 1.090 0.616 2.025 3.854 0.082 0.108 0.232 0.266 0.492 0.911 nan 2.175 2.453 0.879 0.507 0.587 0.461 0.719 5.542 6.233 0.469 0.293 0.318 0.607 0.171 0.188 0.335 0.633 1.476 0.711 1.277 0.731 0.059 0.027 0.510 2.025 0.046 0.592 0.158 0.194 273 chr1 203473631 203495328 + 0 NA Intergenic Intergenic 21208 NM_014359 26254 Hs.632468 NM_014359 ENSG00000188770 OPTC OPT opticin protein-coding 2.020 2.469 1.809 0.273 1.077 0.467 7.256 0.689 0.147 0.980 0.485 0.764 1.344 0.115 0.093 1.257 2.021 0.739 1.140 1.476 1.836 3.666 1.106 nan nan 1.443 2.277 0.464 0.545 1.064 0.922 0.531 0.825 1.629 0.955 0.885 2.076 1.828 1.002 0.077 0.391 0.487 1.725 7.256 0.764 0.382 0.047 0.460 0.456 2367 chr8 59755216 59771402 + 0 NA intron (NM_014729, intron 4 of 8) intron (NM_014729, intron 4 of 8) -190905 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 1.509 nan 1.227 0.456 1.375 0.698 0.846 0.378 0.080 0.453 0.251 1.359 0.673 0.179 0.097 0.419 0.420 0.331 0.969 1.666 1.540 2.014 0.601 0.089 0.052 1.167 nan 1.920 2.017 0.476 0.270 0.085 0.125 0.694 0.990 0.221 0.425 1.590 0.972 0.620 3.997 0.160 0.425 0.846 1.359 0.012 0.487 0.023 0.354 1433 chr2 45015155 45072345 + 0 NA Intergenic Intergenic 124896 NR_103785 100506108 Hs.503113 NR_103785 ENSG00000236502 SIX3-AS1 SIX3OS SIX3 antisense RNA 1 ncRNA 1.423 nan 1.552 0.140 0.814 0.395 0.449 0.087 0.051 0.183 0.161 0.544 0.326 0.055 0.106 0.284 0.189 0.205 0.298 nan 0.625 0.856 0.307 0.409 0.399 0.212 0.397 0.370 0.467 0.593 0.391 0.157 0.202 0.501 0.523 1.346 nan nan 0.622 0.063 0.196 0.165 0.055 0.449 0.544 0.036 0.060 0.053 2.025 1289 chr19 34662034 34670479 + 0 NA intron (NM_001114093, intron 1 of 10) AluSz|SINE|Alu 2904 NM_001114093 26065 Hs.744009 NM_015578 ENSG00000257103 LSM14A C19orf13|FAM61A|RAP55|RAP55A LSM14A, mRNA processing body assembly factor protein-coding 6.499 2.511 4.136 6.122 3.701 1.710 2.792 1.843 0.286 2.346 1.182 3.617 9.397 3.412 0.180 3.471 3.664 5.547 8.328 5.628 5.442 6.012 3.055 9.969 10.104 3.978 4.758 5.077 8.756 11.448 10.410 5.301 9.193 4.300 4.735 5.798 5.446 2.905 1.660 3.781 2.274 0.889 1.203 2.792 3.617 1.177 2.070 2.592 2.179 1239 chr18 77193812 77228600 + 0 NA intron (NM_172389, intron 5 of 9) CpG 50932 NM_001278675 4772 Hs.534074 NM_006162 ENSG00000131196 NFATC1 NF-ATC|NF-ATc1.2|NFAT2|NFATc nuclear factor of activated T-cells 1 protein-coding nan nan 0.483 0.031 0.938 0.452 0.581 0.056 0.051 0.091 0.100 0.512 0.357 0.053 0.061 2.951 3.419 3.456 4.044 0.796 nan 0.691 0.273 0.563 0.568 0.068 0.165 0.157 nan 0.329 0.247 0.630 1.006 0.144 0.200 0.055 0.115 0.273 0.352 0.296 0.051 0.046 0.284 0.581 0.512 0.134 0.038 0.371 0.029 1173 chr18 35062752 35108418 + 0 NA intron (NM_001025087, intron 1 of 12) intron (NM_001025087, intron 1 of 12) -39118 NR_132967 106635546 NR_132967 SNORA111 - small nucleolar RNA, H/ACA box 111 snoRNA nan 0.911 0.612 0.461 1.035 0.494 2.038 0.043 0.056 0.591 0.349 1.026 0.826 0.055 0.063 0.627 0.854 0.660 0.483 1.278 1.252 4.976 1.257 0.140 0.122 0.366 0.521 nan 1.681 0.624 0.601 0.217 0.318 1.608 1.397 0.373 0.564 2.483 1.703 2.892 1.211 0.407 0.161 2.038 1.026 0.219 0.058 0.103 0.160 373 chr10 115467914 115474374 + 0 NA intron (NM_001267058, intron 1 of 5) intron (NM_001267058, intron 1 of 5) 2040 NM_001267058 840 Hs.9216 NM_001227 ENSG00000165806 CASP7 CASP-7|CMH-1|ICE-LAP3|LICE2|MCH3 caspase 7 protein-coding 0.619 nan 0.508 0.359 0.372 0.276 0.514 0.128 0.122 0.227 0.103 0.129 0.937 0.067 0.093 3.354 3.694 11.734 9.387 0.160 0.204 3.549 1.146 2.591 2.567 0.840 1.258 2.190 3.670 0.244 0.100 3.164 4.252 0.129 0.304 0.123 0.127 0.360 0.316 0.060 0.096 0.015 0.121 0.514 0.129 0.029 0.063 3.705 0.039 1169 chr18 32922956 32928836 + 0 NA Intergenic Intergenic -1465 NM_001308123 7572 Hs.514802 NM_006965 ENSG00000172466 ZNF24 KOX17|RSG-A|ZNF191|ZSCAN3|Zfp191 zinc finger protein 24 protein-coding nan 3.548 2.798 5.553 3.520 1.817 5.115 0.985 0.167 1.460 0.434 4.318 8.272 1.548 0.050 4.382 4.390 3.608 5.011 5.739 5.708 7.563 5.082 3.845 3.873 1.360 2.123 nan 17.303 3.153 3.100 1.534 2.063 5.566 6.760 2.873 2.333 8.717 4.782 4.144 3.062 0.993 1.670 5.115 4.318 0.657 2.348 0.893 0.715 853 chr15 31616662 31622507 + 0 NA exon (NM_001302461, exon 1 of 2) exon (NM_001302461, exon 1 of 2) 526 NM_015995 51621 Hs.376443 NM_015995 ENSG00000169926 KLF13 BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1 Kruppel like factor 13 protein-coding 4.373 nan nan 4.592 6.085 3.273 3.931 3.074 0.327 3.644 1.490 9.857 11.395 2.963 0.093 5.424 7.739 3.739 6.008 8.451 6.073 5.498 1.352 8.284 7.477 1.753 2.412 5.228 9.041 5.678 7.974 2.304 5.036 7.181 5.531 1.818 2.266 0.936 0.532 3.511 6.340 2.992 4.787 3.931 9.857 2.285 4.486 2.511 0.785 1088 chr17 46566271 46591202 + 0 NA Intergenic Intergenic 29536 NM_002144 3211 Hs.99992 NM_002144 ENSG00000120094 HOXB1 HCFP3|HOX2|HOX2I|Hox-2.9 homeobox B1 protein-coding 0.765 4.549 nan 2.316 2.977 1.550 0.108 0.099 0.077 3.099 1.360 2.755 8.717 0.121 0.123 0.366 0.353 0.118 0.214 1.970 nan 3.062 1.961 0.488 0.582 0.232 0.348 2.505 nan 0.461 0.146 0.149 0.269 3.021 2.578 0.136 0.242 3.282 1.562 1.311 3.306 1.076 0.022 0.108 2.755 0.023 1.223 0.028 0.045 2183 chr6 136608658 136617022 + 0 NA Intergenic AT_rich|Low_complexity|Low_complexity -1851 NM_001301038 9774 Hs.486542 NM_014739 ENSG00000029363 BCLAF1 BTF|bK211L9.1 BCL2 associated transcription factor 1 protein-coding 5.805 3.377 5.124 5.985 4.799 2.302 4.363 2.325 0.097 1.746 0.793 4.322 7.573 2.833 0.125 8.743 9.694 6.147 7.808 10.066 9.204 nan 9.439 15.676 16.964 3.296 3.896 5.100 8.691 10.004 10.426 6.654 9.164 7.963 7.093 8.254 nan 2.458 1.929 4.363 3.135 1.288 1.980 4.363 4.322 0.978 2.836 4.993 1.848 283 chr1 211870424 211888259 + 0 NA Intergenic Intergenic -30369 NM_001204182 4751 Hs.153704 NM_002497 ENSG00000117650 NEK2 HsPK21|NEK2A|NLK1|PPP1R111|RP67 NIMA related kinase 2 protein-coding 1.426 2.293 1.621 2.545 0.562 0.323 0.250 0.105 0.134 1.152 0.505 0.888 nan 0.091 0.103 0.694 0.921 0.791 1.813 3.418 3.105 nan 0.575 0.998 1.000 0.357 nan 4.626 4.453 0.600 0.327 0.236 0.242 1.441 2.006 0.828 2.300 2.251 1.273 2.258 0.772 0.271 0.324 0.250 0.888 0.894 0.529 0.045 0.380 173 chr1 146707473 146715882 + 0 NA Intergenic Intergenic -2614 NM_001256337 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 2.035 5.618 2.565 2.832 1.265 0.821 0.882 0.633 0.174 1.085 0.615 0.875 5.551 1.121 0.126 2.215 2.345 1.863 2.943 2.968 2.403 2.196 0.993 2.461 2.436 1.619 2.012 2.401 3.029 1.724 2.158 3.202 5.908 1.663 1.192 2.525 3.750 1.469 1.086 0.690 2.562 0.297 0.576 0.882 0.875 0.263 2.581 1.599 0.748 1588 chr20 21485893 21518698 + 0 NA Intergenic CpG -7631 NM_002509 4821 Hs.516922 NM_002509 ENSG00000125820 NKX2-2 NKX2.2|NKX2B NK2 homeobox 2 protein-coding 1.253 0.849 nan 0.177 3.936 2.099 0.160 0.113 0.074 0.913 0.453 1.948 1.017 0.062 0.066 0.702 0.951 0.496 0.668 7.188 7.137 3.944 1.288 0.284 0.233 0.669 1.020 0.292 0.774 2.668 2.575 0.183 0.267 1.461 1.834 0.189 0.274 2.559 1.094 0.049 0.073 0.350 0.266 0.160 1.948 0.857 2.227 0.027 0.079 1996 chr5 81138094 81155955 + 0 NA Intergenic Intergenic -99952 NM_001256736 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 1.507 2.532 1.146 1.440 0.990 0.440 1.992 1.151 0.128 0.806 0.437 1.010 4.399 1.141 0.159 0.523 0.760 0.963 1.822 0.946 1.137 1.864 0.643 1.310 1.374 3.936 4.975 2.909 4.735 2.627 2.542 0.590 1.120 1.652 1.169 0.614 nan 1.016 0.621 1.073 1.985 0.502 0.855 1.992 1.010 0.207 0.926 1.270 0.278 7 chr1 2456386 2481270 + 0 NA Intergenic Intergenic -7144 NM_001010926 388585 Hs.57971 NM_001010926 ENSG00000197921 HES5 bHLHb38 hes family bHLH transcription factor 5 protein-coding 1.817 nan 1.756 1.704 0.988 0.575 0.617 0.467 0.169 0.619 0.248 0.525 4.393 1.046 0.087 1.565 2.717 0.782 1.060 2.208 1.745 1.645 0.495 1.276 1.348 0.854 nan nan 5.309 nan 1.011 0.854 1.043 1.172 1.017 1.046 1.626 0.575 0.419 5.634 1.737 0.277 1.718 0.617 0.525 0.687 0.699 0.598 0.412 1080 chr17 43441498 43463273 + 0 NA Intergenic AluSz|SINE|Alu 50627 NM_199282 201176 Hs.205326 NM_174919 ENSG00000159314 ARHGAP27 CAMGAP1|PP905|SH3D20|SH3P20 Rho GTPase activating protein 27 protein-coding 0.929 1.247 nan 0.511 1.096 0.648 0.696 1.072 0.332 0.296 0.192 0.350 0.654 5.555 0.272 0.544 0.612 1.072 3.479 0.967 nan 2.389 0.531 0.670 0.703 0.288 0.552 1.207 nan 0.883 0.533 0.460 0.460 0.308 0.554 0.384 0.709 0.977 0.718 0.053 0.131 0.044 0.080 0.696 0.350 0.103 0.107 0.105 0.136 184 chr1 153638390 153652483 + 0 NA Intergenic AluJb|SINE|Alu -1932 NM_001267809 3608 Hs.75117 NM_004515 ENSG00000143621 ILF2 NF45|PRO3063 interleukin enhancer binding factor 2 protein-coding nan nan 2.400 1.746 1.638 0.844 1.831 0.880 0.320 1.333 0.995 1.566 6.223 1.315 0.228 1.997 2.032 4.395 4.034 4.056 nan 4.067 1.460 3.681 3.876 2.279 3.077 2.689 3.864 2.633 2.629 2.928 4.380 2.987 2.978 2.725 3.362 1.627 1.039 1.131 2.641 0.455 0.818 1.831 1.566 0.548 1.237 1.145 0.752 670 chr12 119788606 119852048 + 0 NA intron (NM_178499, intron 1 of 13) L2b|LINE|L2 47810 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding nan nan 0.578 0.067 0.695 0.357 0.448 0.057 0.082 0.263 0.251 2.007 5.852 0.062 0.103 0.346 0.318 0.179 0.357 nan nan nan 0.807 0.094 0.106 1.166 1.428 nan nan 0.576 0.245 0.311 0.520 0.728 0.618 0.390 0.799 nan 1.273 1.563 1.491 0.170 0.261 0.448 2.007 0.075 0.206 0.213 0.193 1393 chr2 2847142 2856266 + 0 NA Intergenic (CA)n|Simple_repeat|Simple_repeat 278094 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 1.863 1.928 2.630 2.246 4.172 1.972 2.879 0.092 0.017 2.299 1.337 6.984 12.683 0.047 0.085 2.212 4.753 4.493 1.840 13.316 11.993 4.972 1.339 2.706 2.937 3.150 3.533 10.326 8.504 3.581 4.672 0.990 1.949 1.890 1.125 0.346 0.606 3.225 1.876 10.889 4.996 0.336 0.224 2.879 6.984 3.713 6.772 0.605 0.082 2432 chr8 135718661 135748452 + 0 NA Intergenic Intergenic -8264 NM_001174157 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding nan 1.150 1.764 2.810 1.657 0.881 0.763 0.556 0.181 0.147 0.170 2.231 2.730 0.485 0.077 1.260 1.288 0.739 1.096 2.998 3.173 4.053 2.098 nan 3.960 0.634 0.871 2.511 2.813 1.313 1.078 1.279 1.631 0.944 0.920 1.412 2.119 1.507 1.029 1.155 1.573 0.192 0.637 0.763 2.231 0.172 0.695 0.518 0.670 864 chr15 45100720 45125425 + 0 NA Intergenic Intergenic 84512 NM_080745 140691 Hs.745248 NM_080745 ENSG00000185880 TRIM69 HSD-34|HSD34|RNF36|Trif tripartite motif containing 69 protein-coding 1.562 1.062 nan 0.712 1.056 0.604 0.477 0.091 0.111 1.034 0.537 2.103 2.940 0.048 0.088 0.305 0.276 0.297 0.747 4.809 5.657 3.180 1.114 0.159 0.154 0.315 nan 1.819 2.006 2.448 2.271 0.343 0.649 2.893 3.264 0.229 0.260 1.485 0.965 2.022 1.700 1.002 0.399 0.477 2.103 0.692 0.324 0.867 0.094 2497 chr9 22446065 22458610 + 0 NA 3' UTR (NM_022160, exon 2 of 2) 3' UTR (NM_022160, exon 2 of 2) 5497 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 1.764 nan nan 0.433 0.168 0.115 0.531 0.749 0.174 0.585 0.313 0.143 0.563 0.529 0.083 0.183 0.098 0.544 1.164 0.689 0.766 1.876 0.504 0.062 0.062 3.431 4.152 0.116 0.145 1.207 1.004 0.164 0.247 3.656 3.468 0.425 0.952 3.694 1.758 0.013 0.310 0.993 1.071 0.531 0.143 0.016 0.605 0.063 0.351 574 chr12 12096563 12110286 + 0 NA Intergenic Intergenic -120454 NM_138723 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 1.034 0.943 1.580 2.231 0.531 0.176 0.128 0.049 0.059 0.782 0.268 0.244 1.608 0.024 0.117 1.502 2.182 0.421 0.593 nan 1.044 4.383 0.964 0.447 0.594 0.367 0.628 6.565 6.658 0.930 0.766 1.180 1.728 0.198 0.201 0.225 0.412 2.076 0.934 1.621 0.105 0.021 0.018 0.128 0.244 0.028 0.451 0.962 0.080 1198 chr18 48553783 48559348 + 0 NA promoter-TSS (NM_005359) promoter-TSS (NM_005359) -18 NM_005359 4089 Hs.75862 NM_005359 ENSG00000141646 SMAD4 DPC4|JIP|MADH4|MYHRS SMAD family member 4 protein-coding nan 3.024 4.101 4.050 3.512 2.013 5.554 1.536 0.057 1.327 0.634 6.346 6.216 2.018 0.080 5.333 5.403 6.686 10.506 9.138 8.641 8.681 4.413 5.983 5.934 3.001 3.369 3.656 6.958 4.970 4.850 2.550 5.552 7.689 9.667 4.904 nan 5.267 2.752 2.389 2.477 1.813 2.411 5.554 6.346 0.616 1.623 1.458 2.009 1024 chr17 17578672 17606623 + 0 NA intron (NM_030665, intron 1 of 5) intron (NM_030665, intron 1 of 5) 7860 NM_030665 10743 Hs.655395 NM_030665 ENSG00000108557 RAI1 SMCR|SMS retinoic acid induced 1 protein-coding 3.458 2.032 2.011 1.883 5.242 2.979 3.013 1.031 0.185 1.631 0.694 5.465 4.736 1.208 0.047 4.482 5.251 2.360 nan 5.059 4.823 3.971 1.492 2.189 2.220 1.890 2.642 5.937 8.127 nan 3.970 1.381 2.439 2.002 1.921 2.404 3.211 1.417 0.837 2.120 2.501 0.593 1.772 3.013 5.465 0.942 5.055 1.132 1.352 1182 chr18 42517272 42535796 + 0 NA intron (NM_015559, intron 3 of 5) intron (NM_015559, intron 3 of 5) 23597 NR_036203 100422829 NR_036203 ENSG00000265957 MIR4319 - microRNA 4319 ncRNA nan 1.317 0.741 1.877 0.705 0.302 3.208 0.135 0.097 0.864 0.545 2.119 2.087 0.036 0.085 0.467 0.399 0.316 0.682 3.519 3.414 3.074 1.420 0.051 0.050 0.478 0.711 0.816 1.377 0.368 0.277 0.159 0.215 2.976 2.372 0.260 nan 4.781 2.530 2.508 0.177 0.627 0.084 3.208 2.119 0.110 0.366 0.037 0.119 1700 chr22 18631223 18652159 + 0 NA intron (NM_017414, intron 2 of 10) intron (NM_017414, intron 2 of 10) 8933 NM_017414 11274 Hs.38260 NM_017414 ENSG00000184979 USP18 ISG43|UBP43 ubiquitin specific peptidase 18 protein-coding 0.931 nan 1.296 1.546 1.049 0.671 0.780 0.722 0.223 0.835 0.559 1.475 3.005 0.337 0.072 1.915 2.155 0.992 1.244 1.814 1.638 3.101 0.997 2.071 2.170 0.209 0.330 2.946 3.615 1.032 1.208 0.889 1.189 2.285 2.906 0.122 0.208 4.467 2.362 0.671 1.348 0.752 0.256 0.780 1.475 0.450 0.980 0.747 0.076 2041 chr5 158508656 158534063 + 0 NA intron (NM_001324101, intron 4 of 16) intron (NM_001324101, intron 4 of 16) 5411 NM_001324103 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 early B-cell factor 1 protein-coding 2.561 nan 3.797 0.035 0.664 0.333 1.284 1.377 0.203 0.301 0.279 0.532 0.485 0.051 0.106 0.636 0.737 0.230 0.316 7.323 6.745 0.149 0.057 0.055 0.035 1.005 1.554 0.095 0.111 6.803 6.720 1.264 1.973 0.165 0.128 1.756 3.657 0.741 0.489 2.615 2.998 0.038 4.169 1.284 0.532 0.715 0.040 1.181 1.280 1075 chr17 41430453 41450133 + 0 NA Intergenic Intergenic 25973 NR_027413 100130581 Hs.546897 NR_027412 ENSG00000188825 LINC00910 - long intergenic non-protein coding RNA 910 ncRNA 2.655 3.343 nan 3.197 5.620 3.047 2.389 2.217 0.696 2.080 1.097 2.366 6.056 2.071 0.160 1.805 2.364 2.807 3.817 9.116 nan 4.017 3.271 10.448 11.612 1.021 1.405 3.195 nan 6.479 6.484 5.199 5.502 2.786 2.902 3.329 4.510 1.944 1.146 3.785 4.314 0.348 1.260 2.389 2.366 1.149 1.613 1.945 1.140 1424 chr2 27576747 27583877 + 0 NA promoter-TSS (NM_001318909) promoter-TSS (NM_001318909) -411 NM_001035521 2976 Hs.75782 NM_001521 ENSG00000115207 GTF3C2 TFIIIC-BETA|TFIIIC110 general transcription factor IIIC subunit 2 protein-coding 4.500 1.919 3.012 2.908 2.673 1.326 2.359 1.200 0.523 1.681 0.776 2.055 6.043 3.822 0.211 3.350 2.780 3.380 5.327 4.287 3.458 5.744 2.750 11.679 12.122 2.720 3.727 6.889 nan 5.100 5.951 1.854 3.064 2.672 2.749 6.935 10.074 2.675 1.345 1.755 2.317 0.319 1.621 2.359 2.055 1.253 1.412 0.888 3.567 521 chr11 114090161 114116473 + 0 NA intron (NM_001018011, intron 4 of 6) (GGCTG)n|Simple_repeat|Simple_repeat -63218 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 0.947 0.839 0.716 0.207 0.301 0.128 0.289 0.045 0.049 0.149 0.135 0.141 0.300 0.021 0.108 0.733 nan 0.111 0.131 0.619 0.656 0.683 0.179 0.147 0.148 0.400 nan 0.429 0.471 1.040 1.062 0.575 0.844 0.758 0.694 1.071 3.568 0.867 0.669 0.042 0.139 0.221 0.161 0.289 0.141 0.059 0.073 0.200 0.697 386 chr10 132956156 132965609 + 0 NA intron (NM_174937, intron 6 of 11) intron (NM_174937, intron 6 of 11) 67401 NR_120623 101927489 NR_120623 ENSG00000230098 TCERG1L-AS1 - TCERG1L antisense RNA 1 ncRNA 0.503 1.107 0.797 0.430 8.535 4.832 0.531 0.095 0.041 0.232 0.271 1.952 0.614 0.034 0.072 0.256 0.129 0.028 0.120 0.430 0.512 0.949 0.315 0.088 0.064 0.035 0.127 1.545 1.686 0.155 0.125 0.194 0.259 0.283 0.294 0.045 0.086 1.709 0.723 0.301 0.373 0.110 0.050 0.531 1.952 0.155 0.043 0.032 0.013 1619 chr20 45005631 45018545 + 0 NA exon (NM_001318253, exon 10 of 22) exon (NM_001318253, exon 10 of 22) -18991 NM_001281459 51006 Hs.593344 NM_015945 ENSG00000080189 SLC35C2 BA394O2.1|C20orf5|CGI-15|OVCOV1 solute carrier family 35 member C2 protein-coding nan nan 0.975 0.257 0.319 0.132 0.062 0.292 0.088 0.169 0.087 0.084 0.439 0.079 0.104 3.644 4.987 0.794 0.439 0.506 0.595 nan 0.287 0.572 0.702 0.934 1.405 0.420 0.427 nan 1.960 0.701 1.314 0.064 0.082 0.447 1.182 0.969 0.439 0.022 0.112 0.022 0.847 0.062 0.084 0.202 0.032 0.501 0.124 1323 chr19 42529042 42549243 + 0 NA intron (NM_002088, intron 11 of 18) AluSp|SINE|Alu 30815 NM_002088 2901 Hs.367799 NM_002088 ENSG00000105737 GRIK5 EAA2|GRIK2|GluK5|KA2 glutamate ionotropic receptor kainate type subunit 5 protein-coding 2.333 0.920 3.887 0.157 0.265 0.265 0.183 0.096 0.151 0.063 0.091 0.234 0.336 0.096 0.112 0.556 0.684 0.236 0.378 0.495 0.675 0.517 0.226 0.529 0.657 2.686 3.304 0.501 0.704 3.498 3.404 0.542 0.801 0.204 0.236 1.072 2.511 0.584 0.511 0.132 0.504 0.062 0.297 0.183 0.234 0.742 0.161 0.275 0.479 1415 chr2 24297900 24308590 + 0 NA intron (NM_147184, intron 4 of 5) AluSx|SINE|Alu 3501 NM_001291328 375190 Hs.710370 NM_198553 ENSG00000219626 FAM228B - family with sequence similarity 228 member B protein-coding 2.417 1.470 2.324 2.172 1.480 0.694 1.172 1.370 0.219 1.163 0.567 2.306 5.005 3.729 0.161 2.728 2.969 3.270 4.505 5.124 4.192 5.529 1.935 11.490 12.551 1.299 1.990 8.524 8.157 2.920 3.150 1.687 2.699 0.709 0.572 2.045 2.944 2.336 1.256 4.666 1.531 0.067 0.743 1.172 2.306 0.610 1.654 0.862 0.927 1051 chr17 35833262 35852770 + 0 NA Intergenic Intergenic -6935 NM_007026 11072 Hs.91448 NM_007026 ENSG00000276023 DUSP14 MKP-L|MKP6 dual specificity phosphatase 14 protein-coding nan 1.787 1.148 0.328 1.371 0.693 1.024 1.473 0.205 0.763 0.407 0.884 1.583 0.509 0.081 1.973 2.506 1.409 3.515 nan 1.279 2.024 0.701 1.517 1.486 1.275 1.719 1.334 2.412 nan 3.657 0.803 1.751 1.072 0.980 1.215 2.687 0.944 0.694 0.570 1.467 0.348 1.174 1.024 0.884 0.360 0.676 1.051 0.531 1126 chr17 77454574 77464547 + 0 NA intron (NM_001082575, intron 2 of 14) (CCA)n|Simple_repeat|Simple_repeat 52670 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding protein, fox-1 homolog 3 protein-coding 1.046 0.552 0.861 0.089 0.292 0.104 0.375 0.074 0.106 0.047 0.098 0.036 0.400 0.044 0.074 0.315 0.209 0.069 0.057 3.480 3.608 0.109 0.056 0.092 0.131 nan 1.661 0.102 0.136 6.829 10.348 0.101 0.167 0.063 0.096 0.294 0.476 nan 0.228 0.154 0.079 0.010 0.048 0.375 0.036 0.931 0.041 0.867 1567 chr20 2449220 2452379 + 0 NA intron (NM_198216, intron 1 of 6) intron (NM_198216, intron 1 of 6) 700 NM_198216 6628 Hs.83753 NM_003091 ENSG00000125835 SNRPB CCMS|COD|SNRPB1|Sm-B/B'|SmB/B'|SmB/SmB'|snRNP-B small nuclear ribonucleoprotein polypeptides B and B1 protein-coding 9.639 6.801 5.696 5.475 7.974 4.447 6.157 3.060 0.558 1.998 1.225 6.545 12.405 3.396 0.187 12.931 11.288 10.451 14.437 12.393 11.829 14.309 8.802 15.896 17.064 9.241 10.245 15.996 22.271 14.459 18.526 10.361 14.066 8.177 9.260 9.566 9.527 3.769 1.953 2.835 2.754 1.112 1.342 6.157 6.545 1.906 4.698 1.791 2.829 1191 chr18 46376598 46429318 + 0 NA Intergenic Intergenic 66219 NM_001190823 4092 Hs.465087 NM_005904 ENSG00000101665 SMAD7 CRCS3|MADH7|MADH8 SMAD family member 7 protein-coding nan 0.742 1.595 0.803 0.456 0.226 1.876 0.212 0.095 0.268 0.134 1.194 0.999 0.049 0.071 0.521 0.633 0.261 0.474 0.863 0.921 3.858 0.901 0.235 0.227 0.571 0.796 0.514 0.687 0.755 0.693 0.267 0.345 1.752 1.690 0.323 nan 5.061 2.668 0.675 0.106 0.196 0.341 1.876 1.194 0.382 0.871 0.062 0.129 1757 chr3 21463340 21469100 + 0 NA intron (NM_024697, intron 6 of 7) intron (NM_024697, intron 6 of 7) 19002 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 0.561 0.639 0.557 0.061 0.051 0.028 0.156 0.314 0.057 0.054 0.262 0.084 0.111 0.019 0.076 0.184 0.144 9.059 6.214 0.207 0.207 0.083 0.054 0.199 0.137 0.413 0.629 0.308 0.397 nan 0.179 0.075 0.205 0.051 0.061 0.174 0.196 0.125 0.256 0.048 0.104 0.041 0.156 0.084 0.064 0.119 0.043 503 chr11 94275585 94288101 + 0 NA 3' UTR (NM_002033, exon 1 of 1) 3' UTR (NM_002033, exon 1 of 1) 4826 NM_002033 2526 Hs.390420 NM_002033 ENSG00000196371 FUT4 CD15|ELFT|FCT3A|FUC-TIV|FUTIV|LeX|SSEA-1 fucosyltransferase 4 protein-coding 1.386 nan 1.146 1.293 1.284 0.951 1.126 0.275 0.129 0.490 0.311 1.447 1.799 0.609 0.125 1.783 1.956 0.272 nan 2.758 3.087 1.734 0.948 6.565 6.786 2.260 2.931 2.010 2.923 3.191 4.106 1.633 2.473 1.480 1.370 1.258 nan 1.130 0.794 1.234 0.802 0.289 5.085 1.126 1.447 0.496 0.429 0.809 0.498 964 chr16 32685592 32701406 + 0 NA Intergenic Intergenic -6049 NR_110911 729355 Hs.592038 NM_001099687 ENSG00000261509 TP53TG3B TP53TG3E|TP53TG3F TP53 target 3B protein-coding 0.630 0.751 0.687 0.083 2.693 1.204 0.220 0.075 0.098 0.167 0.089 0.667 2.648 0.625 0.100 0.303 0.174 0.191 0.158 1.140 0.813 1.271 0.506 0.447 0.309 0.546 0.693 5.659 7.443 0.506 0.198 0.161 0.232 0.099 0.176 0.121 0.139 0.280 0.321 4.270 0.034 0.042 0.050 0.220 0.667 0.105 1.538 0.056 0.054 446 chr11 47484522 47496414 + 0 NA 3' UTR (NM_001172640, exon 13 of 13) 3' UTR (NM_001172640, exon 13 of 13) -19738 NM_032645 5913 Hs.81218 NM_005055 ENSG00000165917 RAPSN CMS11|CMS4C|FADS|RAPSYN|RNF205 receptor associated protein of the synapse protein-coding nan 2.464 2.440 3.497 1.908 1.084 1.000 0.233 0.108 2.336 1.077 4.835 4.447 0.101 0.129 0.893 1.886 0.519 0.739 9.340 10.019 4.595 1.531 0.495 0.542 1.117 1.747 1.326 2.261 1.476 1.425 0.307 0.506 4.650 5.125 0.411 nan 4.050 1.661 3.937 3.431 1.372 0.280 1.000 4.835 1.127 0.120 0.092 0.136 45 chr1 16531341 16583742 + 0 NA TTS (NM_030907) TTS (NM_030907) 6118 NM_030907 79363 Hs.546430 NM_030907 ENSG00000132881 RSG1 C1orf89 REM2 and RAB like small GTPase 1 protein-coding 1.887 1.495 nan 1.581 1.113 0.593 0.919 0.554 0.127 0.638 0.340 0.807 3.528 0.478 0.099 1.844 2.308 1.838 3.089 3.375 3.753 1.640 0.592 1.714 nan 0.776 nan 5.219 6.047 nan 1.072 1.309 1.916 0.355 0.395 0.961 1.642 1.371 0.759 1.183 1.489 0.071 0.626 0.919 0.807 0.364 0.659 0.623 0.338 369 chr10 103872344 103883683 + 0 NA intron (NM_001113407, intron 1 of 10) intron (NM_001113407, intron 1 of 10) 2217 NM_001321612 8861 Hs.454418 NM_003893 ENSG00000198728 LDB1 CLIM-2|CLIM2|LDB-1|NLI LIM domain binding 1 protein-coding nan nan 4.091 1.679 4.484 2.280 2.244 1.667 0.347 1.245 0.773 4.371 6.215 2.377 0.106 3.462 4.700 2.033 2.680 4.879 5.020 2.547 0.897 1.441 1.632 2.404 nan 6.318 6.889 2.305 2.771 1.732 2.713 1.894 1.640 2.894 nan 1.199 0.578 2.792 2.611 0.864 0.832 2.244 4.371 1.036 2.079 1.819 3.400 529 chr11 126666607 126702110 + 0 NA intron (NM_032531, intron 1 of 16) L1PA11|LINE|L1 -126284 NR_046986 100874251 Hs.319053 NR_046986 ENSG00000254960 KIRREL3-AS2 - KIRREL3 antisense RNA 2 ncRNA 0.644 1.226 0.740 1.433 0.679 0.253 0.617 0.040 0.058 0.548 0.281 1.652 2.081 0.051 0.092 0.635 0.595 0.181 0.273 1.938 2.368 2.036 0.524 0.126 0.128 0.195 0.372 2.209 2.083 0.458 0.283 0.645 1.024 0.319 0.388 0.351 nan 2.463 1.416 0.781 0.685 0.051 0.152 0.617 1.652 0.136 0.042 0.466 0.195 1970 chr5 50462248 50501263 + 0 NA Intergenic Intergenic -197203 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding nan nan 0.894 0.138 0.464 0.214 0.445 0.075 0.058 0.415 0.292 0.566 0.533 0.067 0.129 0.226 0.182 0.432 0.585 1.409 2.069 nan 0.932 0.070 0.051 0.168 0.203 0.344 0.473 nan 2.325 0.052 0.114 6.823 8.202 0.318 0.665 0.322 0.304 0.027 0.137 2.386 0.398 0.445 0.566 0.388 0.107 0.015 0.117 2364 chr8 53358330 53387182 + 0 NA Intergenic Intergenic -50317 NM_014682 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18, C2H2C-type zinc finger protein-coding 1.044 nan 1.598 0.213 0.306 0.089 0.169 0.071 0.077 0.065 0.115 0.133 0.602 0.053 0.115 8.180 7.256 8.635 5.342 0.455 0.615 0.424 0.166 14.733 15.022 0.290 nan 0.515 0.574 0.524 0.162 6.023 7.069 0.177 0.348 0.245 0.464 0.762 0.626 0.012 0.089 0.029 0.080 0.169 0.133 0.050 0.148 5.280 0.069 818 chr14 76929353 76940673 + 0 NA intron (NM_004452, intron 5 of 10) MIR|SINE|MIR 97323 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 1.153 0.688 0.843 0.966 0.353 0.085 0.988 0.182 0.056 0.041 0.103 1.062 0.551 0.038 0.097 0.308 0.289 0.170 0.205 5.387 6.072 0.123 0.064 0.432 0.463 0.611 0.968 1.414 nan 1.053 0.582 0.215 0.309 0.163 0.138 0.587 2.001 0.822 nan 0.400 0.772 0.042 0.225 0.988 1.062 0.173 0.106 0.044 0.340 1273 chr19 17406662 17418236 + 0 NA intron (NM_024527, intron 1 of 4) intron (NM_024527, intron 1 of 4) 1833 NM_024527 79575 Hs.515664 NM_024527 ENSG00000127220 ABHD8 - abhydrolase domain containing 8 protein-coding 1.754 1.805 4.610 1.344 1.920 1.055 1.632 0.593 0.332 0.935 0.495 2.259 3.612 1.508 0.136 1.492 2.236 1.819 2.734 4.555 3.768 4.588 1.811 1.961 1.948 1.967 2.689 3.563 4.616 3.081 2.944 0.713 1.118 2.008 2.123 2.330 3.686 2.661 1.260 1.875 1.452 0.545 0.550 1.632 2.259 0.403 2.721 0.429 1.355 473 chr11 65473679 65488465 + 0 NA exon (NM_006388, exon 6 of 14) exon (NM_006388, exon 6 of 14) 1599 NM_006388 10524 Hs.397010 NM_006388 ENSG00000172977 KAT5 ESA1|HTATIP|HTATIP1|PLIP|TIP|TIP60|ZC2HC5|cPLA2 lysine acetyltransferase 5 protein-coding nan 1.819 1.428 2.592 1.999 0.963 1.353 0.994 0.228 0.636 0.506 2.198 4.052 1.534 0.152 2.682 2.987 2.361 3.250 4.313 4.384 3.303 1.635 3.211 3.610 2.195 2.822 3.205 3.621 2.765 2.598 1.914 3.156 2.097 2.415 1.427 1.565 1.700 0.972 1.717 1.685 0.465 0.993 1.353 2.198 0.811 1.265 0.622 0.537 496 chr11 77953339 77958347 + 0 NA intron (NM_012296, intron 3 of 9) L1M2a|LINE|L1 55985 NM_020798 57558 Hs.531249 NM_020798 ENSG00000118369 USP35 - ubiquitin specific peptidase 35 protein-coding nan 0.873 0.530 0.157 0.421 0.096 0.128 2.142 0.839 0.243 0.192 0.150 0.381 0.152 0.111 8.638 5.869 10.133 4.528 0.573 0.700 0.983 0.389 0.921 1.172 0.806 1.258 0.328 0.355 0.186 0.143 4.825 7.072 0.191 0.170 0.223 0.524 0.546 0.421 0.089 0.123 0.115 0.128 0.150 0.059 0.089 11.376 0.097 1448 chr2 70120435 70128450 + 0 NA intron (NR_037862, intron 3 of 6) intron (NR_037862, intron 3 of 6) 3367 NM_006857 11017 Hs.54649 NM_006857 ENSG00000124380 SNRNP27 27K|RY1 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 protein-coding nan nan 1.379 0.825 0.980 0.832 0.660 0.604 0.100 0.393 0.241 1.021 1.954 0.986 0.114 6.256 4.827 12.902 6.643 1.728 2.161 2.048 0.723 4.681 5.052 1.427 1.911 1.578 2.498 2.085 1.790 3.270 4.133 0.564 0.816 1.396 1.916 nan 0.530 0.355 0.640 0.071 0.314 0.660 1.021 0.171 0.428 0.616 0.248 771 chr14 33691142 33721614 + 0 NA intron (NM_173159, intron 3 of 11) intron (NM_173159, intron 3 of 11) 297919 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 1.213 0.735 0.910 0.140 0.229 0.115 0.177 0.162 0.127 0.072 0.107 0.172 0.367 2.831 0.131 0.211 0.166 0.154 0.324 0.312 0.415 0.135 0.075 0.205 0.202 0.189 0.260 0.312 0.323 0.550 0.274 0.145 0.244 0.060 0.098 0.328 0.581 0.439 0.474 0.036 0.120 0.015 0.122 0.177 0.172 0.019 0.060 0.029 0.086 220 chr1 159747425 159753043 + 0 NA promoter-TSS (NM_001319658) promoter-TSS (NM_001319658) -502 NM_001319659 54935 Hs.425801 NM_017823 ENSG00000158716 DUSP23 DUSP25|LDP-3|MOSP|VHZ dual specificity phosphatase 23 protein-coding nan nan 3.137 0.811 0.943 0.541 0.096 0.331 0.099 0.459 0.237 0.767 1.879 0.407 0.097 0.771 0.816 7.972 3.416 0.880 nan 1.599 0.418 0.936 0.758 0.524 1.170 1.957 2.958 0.710 0.541 1.140 1.983 1.436 1.577 0.552 0.813 0.639 0.545 0.385 1.996 0.372 0.269 0.096 0.767 0.070 0.054 0.821 0.132 2362 chr8 53240382 53267403 + 0 NA intron (NM_014682, intron 2 of 25) intron (NM_014682, intron 2 of 25) 68547 NM_014682 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18, C2H2C-type zinc finger protein-coding 1.757 nan 0.780 3.253 3.213 1.597 0.493 0.103 0.035 1.454 0.576 2.993 2.011 0.028 0.118 0.576 0.717 0.455 0.747 2.672 2.861 4.669 2.418 0.823 0.884 1.360 nan 3.054 3.435 0.847 0.687 0.479 0.904 2.269 2.913 0.197 0.484 4.493 2.181 0.041 1.651 0.397 0.064 0.493 2.993 0.179 2.549 0.802 0.078 424 chr11 26606043 26622849 + 0 NA intron (NM_031418, intron 14 of 26) HERV17-int|LTR|ERV1 -20631 NM_145650 143662 Hs.407152 NM_145650 ENSG00000169550 MUC15 MUC-15|PAS3|PASIII mucin 15, cell surface associated protein-coding 0.609 1.100 0.709 0.163 0.170 0.095 0.199 0.062 0.106 0.196 0.086 0.385 0.469 0.052 0.067 0.563 0.377 0.212 0.411 0.246 0.300 7.906 5.669 0.264 0.272 0.295 0.446 2.986 4.410 0.400 0.225 0.114 0.193 0.434 0.606 0.253 0.404 3.330 2.105 0.038 0.148 0.078 0.033 0.199 0.385 0.487 0.024 0.047 0.119 1010 chr17 7208890 7220154 + 0 NA intron (NM_001970, intron 3 of 5) intron (NM_001970, intron 3 of 5) 2828 NM_001143762 1984 Hs.534314 NM_001970 ENSG00000132507 EIF5A EIF-5A|EIF5A1|eIF5AI eukaryotic translation initiation factor 5A protein-coding 4.192 1.968 2.677 1.927 3.288 1.891 3.137 1.233 0.132 0.987 0.477 2.889 4.791 9.806 0.483 3.972 4.119 3.501 5.254 4.556 4.265 5.233 2.210 4.552 4.345 2.054 3.208 4.532 5.809 2.636 3.583 1.512 2.594 2.707 2.780 4.565 5.639 1.498 0.774 2.250 2.028 0.551 1.410 3.137 2.889 1.157 3.038 0.932 2.493 942 chr16 25266551 25271014 + 0 NA promoter-TSS (NM_001012981) promoter-TSS (NM_001012981) 73 NM_001012981 342357 Hs.513451 NM_001012981 ENSG00000155592 ZKSCAN2 ZNF694|ZSCAN31|ZSCAN34 zinc finger with KRAB and SCAN domains 2 protein-coding 4.179 2.524 nan 5.699 5.783 4.287 4.070 1.590 0.395 1.864 0.958 5.141 10.358 2.895 0.098 6.748 7.198 3.360 4.542 7.249 6.589 10.594 6.469 11.080 10.908 3.679 4.761 10.118 15.234 8.740 9.556 5.377 9.212 5.943 5.826 5.672 5.898 3.315 1.681 4.063 3.651 1.180 2.646 4.070 5.141 1.636 3.434 3.103 2.660 1702 chr22 19499771 19516079 + 0 NA intron (NM_003504, intron 18 of 18) intron (NM_003504, intron 18 of 18) 4935 NM_001130861 7122 Hs.505337 NM_003277 ENSG00000184113 CLDN5 AWAL|BEC1|CPETRL1|TMVCF claudin 5 protein-coding 1.336 nan 2.889 1.352 0.323 0.215 0.305 0.073 0.063 0.924 0.336 0.250 0.957 0.053 0.043 0.387 0.508 0.222 0.329 1.718 1.637 2.817 0.569 0.332 0.362 0.609 0.857 0.735 1.200 1.177 1.141 0.146 0.210 2.382 2.499 0.701 1.043 3.851 1.896 0.284 0.683 0.631 0.111 0.305 0.250 0.579 1.636 0.024 0.249 2595 chrX 128220795 128227912 + 0 NA Intergenic Intergenic 433129 NM_001282875 6594 Hs.152292 NM_003069 ENSG00000102038 SMARCA1 ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2|hSNF2L SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 protein-coding 0.619 nan 1.320 0.500 7.777 3.653 0.981 0.023 2.952 1.652 0.799 0.196 0.016 0.061 0.280 0.211 0.318 0.530 0.160 0.229 4.412 1.903 0.134 0.117 0.202 0.215 0.209 0.195 0.341 0.255 0.023 0.112 4.301 3.514 0.321 0.364 1.574 0.887 0.008 1.136 0.150 0.981 0.799 0.125 0.072 0.087 519 chr11 113703150 113720774 + 0 NA intron (NM_001346260, intron 2 of 22) intron (NM_001346260, intron 2 of 22) 34330 NM_001346260 57646 Hs.503891 NM_020886 ENSG00000048028 USP28 - ubiquitin specific peptidase 28 protein-coding 0.588 0.770 0.531 0.170 0.192 0.254 0.167 0.077 0.072 0.071 0.123 0.088 0.335 0.086 0.111 5.626 nan 2.723 2.247 0.561 0.637 0.338 0.154 0.822 0.866 0.386 nan 0.371 0.388 0.323 0.178 3.881 6.568 0.096 0.180 0.230 0.587 0.503 0.424 0.091 0.095 0.027 0.084 0.167 0.088 0.016 0.035 5.155 0.048 872 chr15 61315243 61320532 + 0 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 203615 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 0.602 0.691 nan 0.101 0.426 0.096 0.187 0.103 0.030 0.177 0.125 0.263 0.384 0.038 0.100 0.347 0.396 9.890 5.934 0.303 0.376 nan 0.114 0.170 0.137 0.117 0.246 0.325 0.250 0.484 0.306 0.254 0.269 0.087 0.066 0.258 0.396 0.409 0.427 0.010 0.060 0.018 0.029 0.187 0.263 0.109 0.020 0.038 0.039 1578 chr20 14498399 14528304 + 0 NA intron (NM_080676, intron 4 of 16) intron (NM_080676, intron 4 of 16) -21679 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 1.120 nan 0.695 0.158 0.238 0.124 0.188 0.214 0.139 0.078 0.095 0.116 0.317 0.037 0.079 0.595 0.407 0.173 0.280 0.346 0.377 0.387 0.174 0.272 0.266 4.834 4.645 0.427 0.424 0.672 0.371 0.101 0.168 0.136 0.164 0.259 0.662 0.476 0.525 0.013 0.057 0.022 0.057 0.188 0.116 0.468 0.042 0.043 0.149 2078 chr6 19431812 19443810 + 0 NA Intergenic MER47B|DNA|TcMar-Tigger -12241 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 1.114 nan 1.117 0.596 1.174 0.737 0.374 0.290 0.095 0.261 0.198 0.933 3.492 0.099 0.102 0.364 0.197 0.166 0.334 0.566 0.558 2.872 0.837 0.240 0.210 1.148 1.494 0.406 0.409 0.430 0.188 0.176 0.202 1.281 1.020 0.277 0.510 0.780 0.651 5.514 0.956 0.143 0.106 0.374 0.933 0.195 0.203 0.057 0.100 1517 chr2 201848721 201854115 + 0 NA intron (NM_001321621, intron 10 of 10) intron (NM_001321621, intron 10 of 10) -22994 NM_006190 4999 Hs.444870 NM_006190 ENSG00000115942 ORC2 ORC2L origin recognition complex subunit 2 protein-coding 0.823 nan 0.728 0.096 0.384 0.118 0.047 0.153 0.120 0.071 0.156 0.022 0.338 0.040 0.039 0.451 0.321 8.797 4.041 0.191 0.322 0.248 0.099 0.700 0.664 0.479 0.667 0.302 0.423 0.355 0.121 0.352 0.469 0.087 0.038 0.319 0.679 0.280 0.344 0.061 0.033 0.017 0.161 0.047 0.022 0.057 0.073 0.164 1498 chr2 176030181 176036036 + 0 NA promoter-TSS (NR_045772) promoter-TSS (NR_045772) -174 NM_001256094 1386 Hs.592510 NM_001880 ENSG00000115966 ATF2 CRE-BP1|CREB-2|CREB2|HB16|TREB7 activating transcription factor 2 protein-coding 4.405 2.648 2.805 2.952 3.838 2.132 2.334 2.349 0.193 1.197 0.851 2.546 9.572 2.347 0.112 2.368 3.404 4.250 5.048 4.789 4.218 3.870 1.908 8.918 9.015 3.421 3.969 9.601 18.325 5.628 5.627 2.016 4.183 2.100 2.121 6.141 5.876 1.563 0.806 2.855 2.003 0.409 1.666 2.334 2.546 0.761 0.771 1.538 2.131 700 chr13 28013659 28030199 + 0 NA intron (NM_001166263, intron 1 of 5) L1ME2z|LINE|L1 2397 NM_001166262 219402 Hs.534582 NM_152912 ENSG00000122033 MTIF3 IF3mt mitochondrial translational initiation factor 3 protein-coding 1.345 1.785 2.401 2.665 1.179 0.687 0.500 0.636 0.215 0.619 0.308 1.723 3.047 0.940 0.120 2.399 3.291 2.103 nan 3.574 3.323 3.262 1.020 1.645 1.665 1.022 1.432 2.491 3.410 2.666 2.420 3.588 4.735 1.010 0.767 1.283 2.639 1.016 0.673 1.275 1.142 0.144 0.543 0.500 1.723 0.124 0.967 4.207 0.702 925 chr16 2562708 2571363 + 0 NA intron (NM_001694, intron 1 of 2) intron (NM_001694, intron 1 of 2) 3164 NM_001694 527 Hs.389107 NM_001694 ENSG00000185883 ATP6V0C ATP6C|ATP6L|ATPL|VATL|VPPC|Vma3 ATPase H+ transporting V0 subunit c protein-coding 3.374 nan 3.034 3.159 2.488 1.233 2.264 1.503 0.186 1.381 0.435 2.021 4.672 1.803 0.083 3.320 3.459 2.304 3.725 3.874 4.149 nan 3.728 7.789 7.440 1.570 nan 3.151 5.075 3.724 3.191 1.958 2.863 2.920 3.437 2.929 2.218 2.139 1.105 2.014 5.358 0.618 1.210 2.264 2.021 0.621 1.340 0.411 0.638 452 chr11 61579582 61585831 + 0 NA promoter-TSS (NM_001281501) promoter-TSS (NM_001281501) 6 NR_031729 100302263 NR_031729 ENSG00000149485 MIR1908 MIRN1908|hsa-mir-1908|mir-1908 microRNA 1908 ncRNA nan 4.291 2.691 7.083 8.498 3.517 5.100 3.466 0.439 3.054 1.077 7.046 11.040 6.135 0.191 7.635 8.399 4.752 7.554 17.704 14.981 8.404 5.263 8.680 8.883 2.962 3.828 7.741 10.785 5.864 6.549 3.601 7.337 7.957 6.571 3.759 6.278 3.786 2.226 7.439 6.405 2.184 3.392 5.100 7.046 2.255 3.434 4.312 2.760 1730 chr22 39847867 39871901 + 0 NA intron (NM_002409, intron 1 of 1) AluJr|SINE|Alu 6559 NM_002409 4248 Hs.276808 NM_002409 ENSG00000128268 MGAT3 GNT-III|GNT3 mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase protein-coding 1.342 nan 0.618 0.333 0.624 0.258 0.788 0.075 0.095 0.130 0.068 0.930 0.708 0.939 0.110 2.065 2.921 0.350 0.401 1.312 1.227 0.609 0.287 0.197 0.226 0.608 nan 0.768 1.204 nan 0.910 0.653 1.240 0.261 0.194 0.803 1.615 0.663 0.432 1.766 0.885 0.035 0.204 0.788 0.930 0.662 0.161 0.715 0.211 746 chr13 112707052 112734824 + 0 NA promoter-TSS (NM_005986) promoter-TSS (NM_005986) -975 NM_005986 6656 Hs.202526 NM_005986 ENSG00000182968 SOX1 - SRY-box 1 protein-coding 0.519 nan 0.657 1.908 8.194 4.432 8.728 0.038 0.058 1.724 0.802 11.949 18.578 0.035 0.045 1.479 2.219 0.268 0.434 19.843 16.045 3.486 1.230 0.029 0.036 0.019 0.049 4.043 4.931 0.347 0.267 0.971 1.326 0.947 0.563 0.074 0.107 1.099 0.577 6.787 5.037 0.107 0.486 8.728 11.949 0.010 0.007 0.488 0.040 1104 chr17 61914761 61928952 + 0 NA Intergenic Intergenic -1505 NM_001098426 6603 Hs.250581 NM_003077 ENSG00000108604 SMARCD2 BAF60B|CRACD2|PRO2451|Rsc6p SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 protein-coding 2.731 nan 4.520 2.300 4.620 2.265 0.777 0.811 0.224 1.945 0.974 2.871 3.571 1.482 0.123 3.995 5.369 1.302 2.034 3.110 3.016 3.238 1.130 8.435 9.047 1.324 nan 4.963 5.471 3.309 3.344 0.825 2.236 1.897 1.953 1.945 3.903 1.538 0.837 0.791 1.411 0.506 1.284 0.777 2.871 0.478 0.754 0.627 1.065 578 chr12 12865244 12882693 + 0 NA intron (NM_004064, intron 2 of 2) intron (NM_004064, intron 2 of 2) 3764 NM_004064 1027 Hs.238990 NM_004064 ENSG00000111276 CDKN1B CDKN4|KIP1|MEN1B|MEN4|P27KIP1 cyclin dependent kinase inhibitor 1B protein-coding 7.826 4.512 7.060 12.751 8.470 4.312 5.850 2.228 0.267 3.504 1.712 7.771 22.924 5.989 0.174 2.291 2.613 6.769 10.673 nan 16.704 4.452 1.983 12.268 12.390 4.567 5.965 5.469 6.975 9.467 10.525 4.666 9.225 4.580 4.610 3.938 3.527 2.438 1.210 10.296 8.637 1.457 4.178 5.850 7.771 0.840 1.639 4.911 1.262 1053 chr17 36566978 36585898 + 0 NA Intergenic Intergenic -8282 NM_001199417 57636 Hs.374446 NM_020876 ENSG00000275832 ARHGAP23 - Rho GTPase activating protein 23 protein-coding nan 2.310 0.955 1.200 5.078 2.868 1.875 0.600 0.169 1.797 0.881 3.625 4.523 1.255 0.091 4.357 4.801 0.560 0.853 nan 4.909 4.766 2.268 6.234 6.982 1.078 1.324 5.970 6.184 nan 2.935 2.638 2.787 1.618 1.570 1.994 3.857 2.162 1.066 3.606 3.336 0.291 0.941 1.875 3.625 0.779 1.503 0.864 1.014 699 chr13 27936002 27950071 + 0 NA Intergenic Intergenic -55645 NM_002097 2971 Hs.445977 NM_002097 ENSG00000122034 GTF3A AP2|TFIIIA general transcription factor IIIA protein-coding 0.691 0.784 1.377 3.203 1.620 0.743 0.091 0.153 0.092 0.770 0.290 1.602 1.342 0.092 0.067 0.756 0.816 2.646 nan 2.374 2.264 1.927 0.388 0.131 0.183 0.261 0.363 6.579 5.308 0.995 0.825 0.757 0.952 0.396 0.309 0.220 0.364 2.225 1.241 0.222 0.285 0.055 0.022 0.091 1.602 0.028 5.412 0.276 0.043 95 chr1 40404541 40430028 + 0 NA Intergenic THE1D|LTR|ERVL-MaLR -3500 NM_032793 84879 Hs.655177 NM_032793 ENSG00000168389 MFSD2A MCPH15|MFSD2|NLS1 major facilitator superfamily domain containing 2A protein-coding 12.221 1.380 nan 5.473 0.978 0.572 9.449 0.250 0.158 0.343 0.279 2.175 1.735 0.183 0.121 0.648 0.885 0.676 1.293 3.435 2.422 1.077 0.263 0.626 0.684 0.843 nan nan 4.693 0.547 0.518 0.754 nan 0.227 0.179 0.658 1.040 1.612 1.136 1.557 0.882 0.038 8.110 9.449 2.175 0.247 0.266 0.237 0.243 1543 chr2 219816417 219833803 + 0 NA exon (NM_003936, exon 1 of 1) exon (NM_003936, exon 1 of 1) 760 NM_003936 8941 Hs.158460 NM_003936 ENSG00000171450 CDK5R2 NCK5AI|P39|p39nck5ai cyclin dependent kinase 5 regulatory subunit 2 protein-coding nan 2.683 nan 2.605 2.446 1.246 2.781 0.056 0.080 1.862 0.837 3.275 6.943 0.517 0.101 2.796 4.500 0.119 0.282 2.982 2.266 4.466 1.372 0.140 0.142 1.581 2.281 5.324 nan 3.267 3.243 1.138 1.821 2.524 2.575 4.352 6.901 1.414 0.873 2.736 2.071 0.627 1.237 2.781 3.275 1.033 2.584 0.875 1.263 1959 chr5 34230873 34266096 + 0 NA Intergenic Intergenic -123851 NR_037951 100534612 Hs.171929 NR_037951 ENSG00000273294 C1QTNF3-AMACR - C1QTNF3-AMACR readthrough (NMD candidate) ncRNA 1.109 2.479 nan 2.986 1.120 0.548 0.941 1.077 0.205 2.256 1.586 2.394 9.067 0.395 0.165 1.217 1.132 1.351 2.311 3.221 3.076 3.722 1.791 1.837 1.871 5.652 5.693 2.448 3.725 5.148 4.140 0.646 1.419 3.550 4.682 0.668 0.993 2.771 1.315 0.594 1.205 2.127 1.126 0.941 2.394 0.756 1.243 0.912 0.319 2388 chr8 91329763 91339110 + 0 NA intron (NR_051989, intron 2 of 3) intron (NR_051989, intron 2 of 3) 100720 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA nan 2.592 2.700 2.435 0.380 0.068 4.106 0.206 0.034 0.351 0.135 0.090 4.380 0.006 0.069 0.228 0.155 0.264 nan 2.200 1.953 2.972 1.041 0.243 0.243 0.179 0.280 6.433 7.221 1.078 0.768 0.077 0.200 6.299 7.655 1.116 3.540 1.408 0.923 0.402 0.440 2.264 0.559 4.106 0.090 0.032 0.512 0.021 2.101 585 chr12 23784011 23797604 + 0 NA intron (NM_001261414, intron 12 of 16) intron (NM_001261414, intron 12 of 16) -53261 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box 5 protein-coding nan nan nan 2.694 3.345 1.651 1.693 0.045 0.071 0.589 0.302 3.896 0.376 0.088 0.168 0.389 0.186 1.526 0.802 4.720 5.890 3.649 1.363 1.340 1.337 1.143 1.271 0.451 0.450 0.568 0.288 0.245 0.442 1.413 2.233 0.437 0.924 0.516 0.339 0.025 0.246 0.400 1.143 1.693 3.896 0.072 0.007 0.205 0.175 2454 chr8 145128182 145139118 + 0 NA exon (NM_019037, exon 1 of 3) exon (NM_019037, exon 1 of 3) 128 NM_019037 54512 Hs.632041 NM_019037 ENSG00000178896 EXOSC4 RRP41|RRP41A|Rrp41p|SKI6|Ski6p|hRrp41p|p12A exosome component 4 protein-coding 4.171 2.082 nan 3.457 3.445 1.684 2.312 1.766 0.385 0.774 0.375 4.446 6.968 1.380 0.084 3.479 3.736 5.533 5.392 nan 5.275 nan 1.230 7.564 7.598 2.139 2.895 2.322 3.184 2.438 2.910 2.547 4.512 2.057 2.109 2.151 3.267 1.982 1.087 1.627 2.273 0.324 0.807 2.312 4.446 0.827 3.962 1.023 0.793 2135 chr6 44267905 44302550 + 0 NA Intergenic MER58D|DNA|hAT-Charlie -4164 NM_020745 57505 Hs.158381 NM_020745 ENSG00000124608 AARS2 AARSL|COXPD8|LKENP|MT-ALARS|MTALARS alanyl-tRNA synthetase 2, mitochondrial protein-coding 1.403 1.121 1.387 0.333 0.475 0.231 0.503 0.231 0.099 0.186 0.160 0.376 0.707 0.251 0.106 0.705 0.642 0.481 0.663 0.686 0.813 1.247 0.560 0.643 0.691 0.423 0.649 0.751 nan 1.321 1.277 0.332 0.507 0.346 0.347 1.323 3.547 0.616 0.548 0.118 0.418 0.058 0.160 0.503 0.376 0.126 0.135 0.069 1.894 2147 chr6 51212102 51218411 + 0 NA Intergenic Intergenic -271412 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 0.770 1.293 nan 0.172 0.348 0.255 0.306 0.082 0.205 0.050 0.117 0.580 0.509 0.035 0.089 0.983 0.716 9.041 7.499 0.379 0.561 0.107 0.161 0.728 0.643 0.188 0.307 0.529 0.390 0.270 0.092 0.390 0.652 0.217 0.386 0.245 0.624 0.219 0.478 0.009 0.126 0.060 0.351 0.306 0.580 0.016 0.095 0.077 1140 chr17 79815488 79832689 + 0 NA Intergenic Intergenic 4762 NM_001301241 396 Hs.159161 NM_004309 ENSG00000141522 ARHGDIA GDIA1|HEL-S-47e|NPHS8|RHOGDI|RHOGDI-1 Rho GDP dissociation inhibitor alpha protein-coding 3.883 3.075 3.968 3.431 5.531 3.122 5.763 2.212 0.431 3.647 1.595 4.168 6.140 3.578 0.137 4.457 4.937 3.114 4.979 5.470 4.683 4.716 2.682 6.555 6.388 nan 4.245 4.492 7.056 5.762 6.564 2.674 5.041 3.866 4.295 3.927 4.578 nan 1.431 1.488 2.676 0.856 1.995 5.763 4.168 0.941 3.354 1.012 1.801 1189 chr18 45788264 45884740 + 0 NA intron (NM_001318841, intron 2 of 4) AluY|SINE|Alu 99291 NM_001318841 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding nan 1.653 0.990 2.157 0.582 0.292 1.882 0.060 0.048 0.291 0.197 1.126 4.569 0.038 0.072 0.497 0.631 0.744 1.325 2.198 2.589 3.247 0.995 0.183 0.203 0.247 0.401 3.210 2.346 0.756 0.656 0.284 0.385 1.903 2.127 0.210 nan 5.365 2.603 3.396 1.128 0.487 0.281 1.882 1.126 0.144 2.107 0.160 0.069 357 chr10 34824946 34842827 + 0 NA intron (NM_001184785, intron 2 of 24) intron (NM_001184785, intron 2 of 24) 270367 NM_001184790 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 0.688 1.043 0.703 0.063 0.852 0.459 0.111 1.629 0.382 0.150 0.143 0.261 0.259 0.110 0.102 0.461 0.291 0.898 nan 0.331 0.355 0.979 0.528 8.350 8.616 0.440 0.630 0.675 0.549 0.192 0.074 0.267 0.554 0.305 0.288 0.267 0.473 0.408 0.361 0.056 0.048 0.107 0.142 0.111 0.261 0.044 0.051 0.232 0.145 1391 chr2 2641645 2671458 + 0 NA Intergenic Intergenic -321466 NM_001303052 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 0.460 0.612 1.149 0.470 0.833 0.448 0.437 0.035 0.059 0.590 0.256 2.266 2.747 0.040 0.066 0.433 0.689 0.247 0.231 2.490 2.609 1.339 0.432 0.358 0.366 0.427 0.785 2.909 2.628 1.598 1.680 0.287 0.349 0.284 0.197 0.152 0.225 1.329 0.864 2.477 1.298 0.039 0.059 0.437 2.266 0.572 2.363 0.047 0.025 810 chr14 70302638 70317834 + 0 NA Intergenic Intergenic -35878 NM_022137 64093 Hs.497349 NM_022137 ENSG00000198732 SMOC1 OAS SPARC related modular calcium binding 1 protein-coding 2.475 0.921 0.830 1.106 2.204 1.096 1.753 0.153 0.192 1.709 0.932 0.530 0.841 0.029 0.085 0.297 0.124 0.181 0.189 0.925 0.868 4.159 1.754 0.251 0.239 0.680 1.113 1.134 nan 1.273 1.148 0.271 0.380 5.909 6.530 0.343 1.077 3.310 nan 0.069 0.293 2.323 2.401 1.753 0.530 0.071 0.642 0.162 0.422 97 chr1 40721977 40725633 + 0 NA promoter-TSS (NM_005857) promoter-TSS (NM_005857) 83 NM_005857 10269 Hs.132642 NM_005857 ENSG00000084073 ZMPSTE24 FACE-1|FACE1|HGPS|PRO1|STE24|Ste24p zinc metallopeptidase STE24 protein-coding 34.669 3.032 nan 20.708 3.962 1.563 89.235 3.915 0.528 2.575 1.350 6.634 6.818 5.034 0.194 5.497 4.911 6.387 9.409 9.573 9.779 6.499 2.609 12.867 14.153 4.948 nan nan 18.317 8.555 7.472 8.675 nan 2.778 3.059 6.444 6.769 8.109 4.158 2.537 1.851 0.396 22.209 89.235 6.634 1.364 1.332 3.276 1.932 1540 chr2 219259635 219272431 + 0 NA intron (NM_182642, intron 1 of 6) intron (NM_182642, intron 1 of 6) -1336 NR_029500 407017 NR_029500 ENSG00000199121 MIR26B MIRN26B|hsa-mir-26b|miR-26b microRNA 26b ncRNA nan 2.461 nan 4.532 5.109 2.367 1.716 2.336 0.389 1.153 0.849 3.843 10.167 8.554 0.203 1.493 3.510 2.542 3.536 2.622 2.150 2.651 0.813 3.193 3.274 1.681 2.252 8.791 nan 2.562 2.827 1.129 2.247 0.954 1.008 1.699 2.766 1.533 0.855 4.368 1.713 0.155 0.901 1.716 3.843 0.995 4.232 1.439 1.472 1572 chr20 3775480 3802736 + 0 NA promoter-TSS (NR_109859) promoter-TSS (NR_109859) -33 NR_109859 101929125 Hs.744106 NR_109859 ENSG00000275491 LINC01730 - long intergenic non-protein coding RNA 1730 ncRNA 3.068 5.413 4.948 3.104 5.314 2.651 2.628 2.638 0.514 1.453 0.753 3.170 9.568 0.890 0.078 4.052 6.673 2.346 6.025 5.191 4.841 4.839 1.530 3.844 4.255 2.702 3.468 7.060 7.656 2.558 2.355 2.011 3.629 3.929 4.205 2.022 2.566 3.076 1.464 3.739 4.442 0.888 1.576 2.628 3.170 1.090 3.070 2.006 0.924 154 chr1 94078208 94084429 + 0 NA intron (NM_001261408, intron 5 of 13) intron (NM_001261408, intron 5 of 13) -1616 NM_001261410 8412 Hs.36958 NM_003567 ENSG00000137936 BCAR3 NSP2|SH2D3B breast cancer anti-estrogen resistance 3 protein-coding nan nan 2.051 0.920 5.453 2.385 2.927 8.935 0.349 1.384 0.450 1.106 2.331 0.245 0.118 4.357 6.339 6.375 6.211 2.036 nan 3.780 1.181 2.137 2.023 2.586 nan 4.821 4.749 nan 0.381 5.506 5.684 1.547 1.236 0.597 1.120 2.215 1.467 3.776 0.527 0.537 0.396 2.927 1.106 0.095 4.384 3.821 0.278 1484 chr2 153572492 153576817 + 0 NA promoter-TSS (NM_017892) promoter-TSS (NM_017892) 247 NR_024526 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 8.676 3.621 6.614 7.899 7.214 3.370 5.020 3.414 0.260 3.170 1.412 6.872 18.949 4.735 0.147 9.331 9.627 10.528 13.418 10.278 8.461 9.950 4.505 21.592 22.815 6.369 7.902 9.077 11.296 12.935 16.447 5.801 10.351 6.601 5.867 11.840 11.454 3.461 1.785 6.370 4.758 1.414 3.315 5.020 6.872 2.178 1.619 2.781 3.256 264 chr1 202125203 202140627 + 0 NA Intergenic Intergenic -2199 NM_001199797 5778 Hs.402773 NM_002832 ENSG00000143851 PTPN7 BPTP-4|HEPTP|LC-PTP|LPTP|PTPNI protein tyrosine phosphatase, non-receptor type 7 protein-coding 1.418 0.993 2.716 0.148 0.392 0.259 0.305 0.174 0.104 0.174 0.174 0.202 0.444 0.105 0.077 3.291 5.375 1.441 1.284 0.972 0.978 0.764 0.197 nan nan 0.768 1.455 0.589 0.916 1.309 1.497 1.648 2.417 0.218 0.302 0.630 1.056 0.657 0.457 0.380 0.342 0.048 0.140 0.305 0.202 0.282 0.235 2.007 0.535 2571 chr9 139079370 139100723 + 0 NA intron (NM_178138, intron 5 of 5) intron (NM_178138, intron 5 of 5) 4973 NM_014564 8022 Hs.148427 NM_014564 ENSG00000107187 LHX3 CPHD3|LIM3|M2-LHX3 LIM homeobox 3 protein-coding nan 0.737 0.746 0.252 0.464 0.229 0.642 0.087 0.075 0.102 0.054 0.185 0.767 0.139 0.053 0.237 0.290 0.137 0.137 0.555 0.675 nan 0.258 0.051 0.069 0.085 0.225 0.365 0.427 0.940 0.846 0.364 0.309 0.434 0.470 0.733 1.279 0.276 0.253 0.559 0.264 0.099 6.768 0.642 0.185 0.317 0.033 0.065 0.075 760 chr14 23979245 23987485 + 0 NA intron (NR_046051, intron 3 of 4) intron (NR_046051, intron 3 of 4) 1346 NR_046052 79178 Hs.655179 NM_024328 ENSG00000259431 THTPA THTP|THTPASE thiamine triphosphatase protein-coding 4.744 1.386 3.146 0.633 0.901 0.543 0.195 0.118 0.135 0.401 0.351 1.682 1.288 0.036 0.096 0.648 1.238 0.112 0.170 7.065 6.563 0.974 0.341 0.308 0.279 2.200 2.985 0.588 nan 9.533 9.053 0.311 0.520 1.628 0.895 0.161 0.217 2.451 1.127 6.838 0.075 0.568 0.134 0.195 1.682 1.560 1.058 0.060 0.031 140 chr1 71889470 71896241 + 0 NA intron (NM_173808, intron 6 of 6) intron (NM_173808, intron 6 of 6) 345848 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA nan 0.729 0.978 0.455 0.544 0.283 0.272 0.065 0.047 1.203 0.571 0.713 0.326 0.064 0.169 0.555 0.515 0.291 0.273 0.852 nan 10.706 4.673 1.008 0.989 1.009 nan 0.389 0.362 0.529 0.188 0.246 0.414 1.116 0.846 0.615 1.052 1.059 0.606 0.196 0.091 0.111 0.036 0.272 0.713 0.014 0.030 0.130 0.109 2317 chr7 129249997 129255867 + 0 NA intron (NM_005011, intron 1 of 10) intron (NM_005011, intron 1 of 10) 1389 NM_005011 4899 Hs.654363 NM_005011 ENSG00000106459 NRF1 ALPHA-PAL nuclear respiratory factor 1 protein-coding 5.456 1.849 3.321 2.920 3.697 1.817 4.832 2.538 0.209 2.770 1.275 7.281 4.881 4.574 0.154 6.330 5.356 8.139 9.079 7.428 7.292 6.639 2.948 11.069 10.548 3.646 4.607 3.903 7.228 6.458 6.628 5.613 9.558 4.817 4.497 6.084 5.130 3.565 2.266 2.676 3.397 0.714 2.367 4.832 7.281 1.137 1.985 1.377 0.890 1820 chr3 141818403 141848832 + 0 NA intron (NM_001178139, intron 1 of 12) HAL1b|LINE|L1 34769 NM_001178139 7029 Hs.379018 NM_006286 ENSG00000114126 TFDP2 DP2 transcription factor Dp-2 protein-coding 1.287 nan nan 0.200 0.515 0.258 0.102 0.251 0.185 0.318 0.313 0.192 0.265 0.068 0.108 0.315 0.264 0.305 0.450 0.378 0.518 nan 0.322 0.316 0.265 5.588 6.104 0.296 nan nan 0.887 0.240 0.355 0.074 0.106 0.931 1.583 0.891 0.645 0.082 0.076 0.025 0.136 0.102 0.192 0.172 0.017 0.088 0.297 2223 chr7 7720546 7770730 + 0 NA intron (NM_002947, intron 2 of 7) intron (NM_002947, intron 2 of 7) 12600 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 1.753 1.315 1.833 0.490 3.007 1.621 0.260 0.379 0.089 0.936 0.450 2.348 nan 0.109 0.157 0.662 0.479 0.467 nan 1.926 2.293 nan 1.029 0.630 0.610 4.604 4.953 nan 1.012 1.328 0.768 0.261 0.394 2.518 2.690 1.664 4.493 1.018 0.728 1.104 0.498 0.444 0.212 0.260 2.348 0.097 0.403 0.120 1.690 2077 chr6 19288785 19313797 + 0 NA Intergenic Intergenic -120580 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 1.147 nan 0.959 1.259 1.234 0.719 1.082 0.244 0.161 0.401 0.230 3.719 4.510 0.056 0.094 0.455 0.426 0.537 0.847 2.753 3.156 3.017 0.888 0.267 0.232 1.134 1.460 0.828 0.980 0.600 0.403 0.314 0.411 1.935 1.702 0.270 0.458 1.281 0.816 3.374 1.661 0.452 1.214 1.082 3.719 0.565 0.467 0.170 0.074 2271 chr7 72236710 72258351 + 0 NA intron (NM_001145440, intron 6 of 14) intron (NM_001145440, intron 6 of 14) 51283 NM_001145440 441250 Hs.488614 NM_001145440 ENSG00000277149 TYW1B LINC00069|NCRNA00069|RSAFD2 tRNA-yW synthesizing protein 1 homolog B protein-coding nan 0.681 1.247 0.197 0.521 0.276 0.291 0.411 0.240 0.484 0.280 0.260 0.436 0.085 0.198 0.457 0.406 0.419 nan 0.413 0.540 1.338 0.391 0.237 0.223 1.441 nan 0.320 nan 0.635 0.409 0.179 0.302 0.283 0.528 0.628 1.328 3.175 1.358 0.110 0.234 0.044 0.510 0.291 0.260 0.219 2.108 0.062 0.416 1243 chr19 788067 812123 + 0 NA intron (NM_031991, intron 2 of 13) AluSx1|SINE|Alu 2703 NM_031990 5725 Hs.172550 NM_002819 ENSG00000011304 PTBP1 HNRNP-I|HNRNPI|HNRPI|PTB|PTB-1|PTB-T|PTB2|PTB3|PTB4|pPTB polypyrimidine tract binding protein 1 protein-coding 1.977 1.345 2.790 1.355 1.568 0.874 1.655 0.782 0.227 0.677 0.457 1.730 2.519 1.117 0.097 1.075 1.136 2.742 4.117 2.291 2.258 0.992 0.536 2.525 2.388 1.051 1.663 1.226 nan 2.593 2.652 0.787 1.493 1.314 1.588 1.253 1.402 1.173 0.660 1.216 1.506 0.467 3.328 1.655 1.730 0.515 1.122 0.478 0.381 65 chr1 27886758 27903158 + 0 NA intron (NM_001029882, intron 1 of 6) CpG 35047 NM_001029882 27245 Hs.469280 NM_001029882 ENSG00000126705 AHDC1 MRD25 AT-hook DNA binding motif containing 1 protein-coding 2.662 1.517 nan 2.021 0.698 0.384 4.323 1.040 0.167 0.295 0.147 0.532 1.145 2.133 0.123 1.590 1.967 0.933 1.428 2.296 2.547 1.006 0.442 1.349 1.187 2.466 3.037 2.786 3.943 1.068 0.778 1.010 1.103 0.468 0.406 1.597 2.584 1.126 0.716 2.767 0.878 0.117 0.299 4.323 0.532 1.167 0.498 0.266 0.491 402 chr11 9479999 9485503 + 0 NA promoter-TSS (NR_036539) promoter-TSS (NR_036539) 239 NM_003442 7702 Hs.523471 NM_003442 ENSG00000166478 ZNF143 SBF|STAF|pHZ-1 zinc finger protein 143 protein-coding 5.343 5.471 5.785 7.211 8.063 4.369 5.840 3.736 0.379 2.817 1.386 10.464 12.042 6.374 0.174 11.879 9.963 9.225 14.572 12.857 13.016 9.733 6.933 18.182 19.401 7.085 8.878 6.337 11.378 10.416 10.189 8.255 11.904 8.290 10.091 9.400 8.713 4.111 2.049 5.979 5.468 1.898 2.521 5.840 10.464 0.996 1.771 4.039 3.078 1515 chr2 200167115 200177852 + 0 NA intron (NM_001172509, intron 10 of 10) intron (NM_001172509, intron 10 of 10) 150336 NR_134967 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 0.900 nan 0.887 1.692 4.464 2.150 1.524 0.136 0.149 0.762 0.545 3.885 1.807 0.082 1.017 0.900 0.283 0.361 8.228 7.764 1.979 0.455 0.408 0.510 1.149 1.445 4.325 5.052 1.173 1.354 0.451 0.694 0.925 1.256 1.076 2.628 1.889 0.935 0.069 1.795 0.265 1.018 1.524 3.885 0.358 1.716 0.425 0.439 3 chr1 1108157 1115650 + 0 NA intron (NM_001130045, intron 3 of 15) intron (NM_001130045, intron 3 of 15) 2617 NM_001130045 254173 Hs.454835 NM_153254 ENSG00000162571 TTLL10 TTLL5 tubulin tyrosine ligase like 10 protein-coding 0.735 nan 1.255 2.888 1.716 0.884 0.257 0.101 0.106 0.769 0.443 2.409 2.126 0.100 0.086 0.708 1.341 0.209 0.408 13.153 10.356 0.876 0.248 1.780 1.746 0.135 nan nan 17.265 nan 0.130 0.458 0.519 0.077 0.101 0.123 0.167 1.269 0.863 7.545 4.121 0.013 1.058 0.257 2.409 0.390 0.105 0.016 1859 chr3 181055625 181063493 + 0 NA intron (NR_075093, intron 2 of 4) AluY|SINE|Alu 100715 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 0.814 0.905 0.630 0.156 0.219 0.102 0.491 0.106 0.206 0.261 0.186 0.030 0.422 0.054 0.069 0.233 0.123 0.088 0.149 0.522 0.595 10.812 3.173 0.145 0.100 0.164 0.362 0.333 0.240 0.794 0.354 0.101 0.158 0.149 0.168 0.196 0.306 0.465 0.469 0.021 0.201 0.025 0.646 0.491 0.030 0.028 0.038 0.037 0.063 1507 chr2 183490409 183504197 + 0 NA Intergenic Intergenic -83465 NR_073367 54431 Hs.516632 NM_018981 ENSG00000077232 DNAJC10 ERdj5|JPDI|MTHr|PDIA19 DnaJ heat shock protein family (Hsp40) member C10 protein-coding 0.870 1.180 1.080 0.971 0.439 0.258 0.685 0.108 0.103 0.616 0.313 0.633 0.535 0.024 0.079 0.300 0.237 0.241 0.274 1.179 1.414 2.867 1.342 0.699 0.770 nan 4.220 4.041 4.301 0.499 0.259 0.153 0.200 1.113 0.841 0.422 nan 0.645 0.517 0.238 0.148 0.028 0.296 0.685 0.633 0.070 0.044 0.014 0.099 1346 chr19 47995804 48019652 + 0 NA intron (NM_003827, intron 1 of 10) intron (NM_003827, intron 1 of 10) 10787 NR_038457 8775 Hs.126938 NM_003827 ENSG00000105402 NAPA SNAPA NSF attachment protein alpha protein-coding 2.166 1.074 6.699 0.640 0.596 0.383 0.707 0.780 0.229 0.406 0.248 0.608 0.885 0.598 0.117 0.788 1.037 1.032 1.675 1.877 2.158 1.270 0.488 1.962 2.091 3.564 4.581 1.201 1.789 5.276 5.647 0.745 1.062 0.630 0.914 1.739 3.182 1.298 0.684 0.633 0.783 0.126 0.273 0.707 0.608 1.648 0.735 0.246 1.016 93 chr1 39317101 39330456 + 0 NA intron (NM_022157, intron 1 of 6) intron (NM_022157, intron 1 of 6) 1717 NM_001271851 64121 Hs.532461 NM_022157 ENSG00000116954 RRAGC GTR2|RAGC|TIB929 Ras related GTP binding C protein-coding 12.385 nan 1.296 2.312 1.001 0.419 0.614 1.171 0.264 0.460 0.363 1.668 2.395 0.820 0.187 0.729 1.053 1.436 1.668 1.528 1.702 nan 0.317 1.319 1.463 1.374 1.772 5.967 7.858 nan 0.557 1.264 2.047 0.285 0.421 1.092 2.127 28.669 18.519 0.418 0.719 0.050 0.299 0.614 1.668 0.100 0.327 0.436 0.280 274 chr1 203741196 203747256 + 0 NA 3' UTR (NM_001136190, exon 5 of 5) 3' UTR (NM_001136190, exon 5 of 5) 5460 NM_001282878 54900 Hs.272794 NM_017773 ENSG00000122188 LAX1 LAX lymphocyte transmembrane adaptor 1 protein-coding 1.287 1.032 1.083 0.066 0.382 0.158 0.190 0.274 0.133 0.181 0.258 0.223 0.407 0.107 0.122 3.359 3.652 9.142 5.269 0.411 0.491 0.543 0.330 nan nan 0.763 1.171 0.427 0.428 0.358 0.192 1.119 1.319 0.225 0.247 0.315 0.734 0.667 0.453 0.018 0.203 0.048 0.091 0.190 0.223 0.064 0.050 0.976 0.198 994 chr16 89571012 89576224 + 0 NA Intergenic MIRb|SINE|MIR -1178 NM_199367 6687 Hs.185597 NM_003119 ENSG00000197912 SPG7 CAR|CMAR|PGN|SPG5C SPG7, paraplegin matrix AAA peptidase subunit protein-coding nan 1.647 2.302 3.273 2.877 1.354 3.968 1.188 0.214 0.552 0.224 3.301 2.924 1.978 0.040 4.092 4.424 2.327 4.122 2.489 2.472 3.007 1.094 5.042 4.685 1.679 2.446 3.292 5.423 4.325 4.260 1.605 2.881 1.409 1.955 3.632 3.183 2.393 1.316 0.821 1.225 0.202 0.854 3.968 3.301 1.139 5.481 0.552 0.856 1369 chr19 50422202 50429461 + 0 NA intron (NM_001193357, intron 1 of 1) intron (NM_001193357, intron 1 of 1) -6128 NM_012068 22809 Hs.9754 NM_012068 ENSG00000169136 ATF5 ATFX|HMFN0395 activating transcription factor 5 protein-coding 1.444 0.770 1.053 0.333 13.275 7.187 1.740 0.237 0.140 0.353 0.080 2.287 0.957 1.641 0.100 1.880 2.943 0.477 0.799 4.708 4.364 0.758 0.290 3.621 3.763 1.045 1.405 0.614 0.787 0.874 0.936 5.050 5.828 0.418 0.603 0.410 1.485 1.008 0.488 2.537 3.198 0.144 3.236 1.740 2.287 1.869 0.161 2.537 0.269 250 chr1 182143296 182159502 + 0 NA Intergenic Intergenic -120552 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding nan nan 1.127 0.444 0.269 0.167 1.127 0.133 0.089 0.206 0.192 0.081 1.737 0.034 0.124 0.500 0.308 1.974 8.077 0.325 nan 0.182 0.097 nan 0.400 1.111 1.503 0.410 0.481 0.340 0.189 0.462 0.607 0.562 0.795 0.332 nan 0.567 0.491 0.062 0.233 0.065 0.044 1.127 0.081 0.095 0.031 0.092 0.169 2170 chr6 118717239 118724789 + 0 NA Intergenic Intergenic -101522 NR_002730 23629 Hs.648050 NR_002730 BRD7P3 BP75 bromodomain containing 7 pseudogene 3 pseudo nan 2.646 nan 0.706 0.256 0.128 1.187 0.160 0.129 0.378 0.185 0.111 5.103 0.058 0.158 0.467 0.342 0.418 0.429 0.641 nan nan 0.110 0.326 0.246 0.366 nan 1.076 1.404 0.517 0.331 0.086 0.172 0.132 0.318 0.153 nan 1.033 0.839 8.033 0.306 0.013 0.085 1.187 0.111 0.117 0.305 0.027 0.051 785 chr14 50063928 50067491 + 0 NA non-coding (NR_037793, exon 1 of 5) non-coding (NR_037793, exon 1 of 5) 294 NM_152329 122769 Hs.451090 NM_152329 ENSG00000165501 LRR1 4-1BBLRR|LRR-1|PPIL5 leucine rich repeat protein 1 protein-coding 12.946 6.722 7.896 12.712 7.693 3.955 11.589 5.016 0.541 3.578 2.174 10.840 13.638 5.387 0.089 11.611 9.944 11.341 15.720 17.552 15.229 13.989 9.447 20.495 20.449 6.177 7.726 12.547 19.843 20.484 21.038 8.823 13.698 13.227 15.082 9.805 7.555 7.828 4.877 11.073 9.165 2.904 6.509 11.589 10.840 1.517 6.342 4.071 2.207 555 chr12 6944904 6963657 + 0 NA intron (NM_002075, intron 8 of 9) L1MC4|LINE|L1 4262 NM_001297571 2784 Hs.631657 NM_002075 ENSG00000111664 GNB3 CSNB1H G protein subunit beta 3 protein-coding 2.390 nan nan 2.385 1.294 0.753 0.703 0.228 0.077 0.740 0.387 1.223 3.673 1.001 0.122 0.655 1.021 1.538 1.995 nan 3.303 3.513 1.401 3.214 3.382 1.272 2.052 1.527 1.796 2.765 2.188 0.775 0.985 1.133 1.418 2.262 9.424 0.619 0.369 1.073 1.760 0.274 1.230 0.703 1.223 2.694 0.331 0.517 3.301 1604 chr20 32250332 32263644 + 0 NA TTS (NM_001024675) TTS (NM_001024675) 2684 NM_001024675 170487 Hs.592151 NM_001024675 ENSG00000182584 ACTL10 C20orf134|dJ63M2.2 actin like 10 protein-coding 2.486 4.982 3.214 5.303 3.075 1.588 1.703 1.640 0.229 1.486 0.774 4.587 7.608 2.206 0.095 4.514 6.371 1.739 2.796 3.499 nan 6.675 1.962 3.521 3.841 2.240 3.205 5.931 6.306 2.987 2.886 1.819 3.282 1.388 1.410 1.950 nan 0.995 0.502 2.257 2.987 0.400 0.647 1.703 4.587 0.488 1.917 0.922 1.183 1245 chr19 1565670 1580397 + 0 NA Intergenic AluJb|SINE|Alu -4976 NM_001174118 399664 Hs.436495 NM_203304 ENSG00000181588 MEX3D MEX-3D|MEX3|OK/SW-cl.4|RKHD1|RNF193|TINO mex-3 RNA binding family member D protein-coding 1.783 1.189 3.038 1.360 0.958 0.582 1.559 0.391 0.144 0.524 0.357 1.791 2.699 0.727 0.064 0.679 0.784 1.615 2.188 2.400 1.971 1.122 0.382 1.561 1.473 0.760 1.380 0.593 nan 1.205 0.959 0.312 0.453 1.513 1.232 1.530 1.102 1.453 0.855 5.063 1.899 0.218 0.156 1.559 1.791 0.602 1.296 0.060 0.291 875 chr15 63738410 63744157 + 0 NA Intergenic AluSc8|SINE|Alu -55427 NR_046342 9960 Hs.458499 NM_006537 ENSG00000140455 USP3 SIH003|UBP ubiquitin specific peptidase 3 protein-coding 0.944 1.384 nan 1.178 0.878 0.389 0.599 0.180 0.028 1.612 0.844 2.241 0.956 0.019 0.041 1.523 1.787 7.919 7.130 2.092 1.752 nan 1.408 0.337 0.365 0.766 0.770 1.895 1.624 0.845 0.700 0.443 0.515 1.897 1.175 0.366 1.354 1.887 1.138 0.144 1.029 0.320 0.194 0.599 2.241 0.169 0.211 0.068 0.193 1523 chr2 207985563 208033501 + 0 NA intron (NM_001270943, intron 1 of 3) intron (NM_001270943, intron 1 of 3) -10671 NM_001270944 8609 Hs.59908 NM_003709 ENSG00000118263 KLF7 UKLF Kruppel like factor 7 protein-coding 2.251 nan 1.559 0.856 4.609 2.427 2.238 1.161 0.141 1.437 0.934 1.566 3.995 0.841 0.085 1.520 2.006 1.091 1.547 1.393 1.314 1.363 0.892 3.197 3.278 3.464 4.340 1.329 1.654 2.656 2.717 0.661 1.452 3.287 3.484 2.229 3.541 0.725 0.392 2.054 1.055 0.979 0.474 2.238 1.566 1.018 0.555 0.265 1.010 2240 chr7 21400358 21411626 + 0 NA Intergenic Intergenic -61660 NR_137166 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 0.920 1.317 1.161 1.999 1.333 0.725 0.092 0.109 0.128 0.975 0.495 0.870 2.629 0.204 0.121 0.633 0.400 0.882 nan 0.453 0.549 7.561 3.693 0.273 0.213 0.181 0.375 2.445 3.751 0.332 0.139 0.259 0.439 1.111 2.071 0.203 nan 1.627 0.922 0.149 0.125 0.085 0.028 0.092 0.870 0.017 0.907 0.068 0.033 1839 chr3 169489244 169492560 + 0 NA promoter-TSS (NM_001185118) promoter-TSS (NM_001185118) 49 NR_033703 55892 Hs.507025 NM_018657 ENSG00000085274 MYNN OSZF|SBBIZ1|ZBTB31|ZNF902 myoneurin protein-coding 9.719 6.383 6.011 10.939 10.427 5.703 5.510 5.734 0.606 6.464 2.950 6.168 12.639 3.614 0.145 5.101 8.726 8.711 12.161 13.358 10.823 19.737 13.856 20.539 21.833 8.717 9.095 nan 16.781 nan 21.974 4.720 8.989 13.210 15.826 10.402 9.366 6.418 3.473 5.778 6.291 1.643 4.224 5.510 6.168 1.641 3.123 3.578 3.870 450 chr11 61520061 61525925 + 0 NA intron (NM_013279, intron 1 of 25) intron (NM_013279, intron 1 of 25) 132 NM_013279 745 Hs.473109 NM_013279 ENSG00000124920 MYRF C11orf9|MRF|Ndt80|pqn-47 myelin regulatory factor protein-coding nan 0.786 0.718 0.161 10.167 5.123 0.341 0.289 0.054 0.068 0.117 0.249 0.664 0.566 0.142 0.840 1.126 1.070 1.967 1.291 1.195 1.144 0.394 0.819 0.872 0.699 0.925 0.582 1.004 0.542 0.317 3.560 6.863 0.469 0.825 0.369 0.742 0.441 0.302 0.076 0.151 0.049 0.041 0.341 0.249 0.106 0.140 5.879 0.042 1991 chr5 71196518 71205204 + 0 NA Intergenic Intergenic 185871 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 1.453 nan 1.227 0.102 6.179 3.379 3.688 0.252 0.038 0.616 0.316 0.128 1.550 0.025 0.068 0.267 0.572 0.511 0.559 0.422 0.455 10.475 3.860 0.128 0.158 0.828 nan 0.644 0.674 1.978 1.764 0.599 1.669 8.781 12.082 0.896 3.404 2.414 0.944 0.287 1.107 3.127 0.458 3.688 0.128 0.224 0.233 2.457 1.371 1760 chr3 25077097 25091691 + 0 NA intron (NM_001290216, intron 2 of 10) L1MA9|LINE|L1 213580 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 0.783 1.270 0.581 0.024 0.302 0.132 0.547 1.512 0.066 0.151 0.108 0.016 0.218 0.075 0.074 0.210 0.125 3.636 7.050 0.739 0.702 0.111 0.028 0.207 0.174 0.708 0.844 0.240 0.212 nan 0.299 0.233 0.429 0.739 1.121 0.165 0.215 0.384 0.349 0.259 0.066 0.092 0.243 0.547 0.016 0.099 0.051 0.245 0.060 348 chr10 18937889 18951010 + 0 NA Intergenic Intergenic -3864 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding nan 1.889 1.788 2.500 2.504 1.225 0.795 3.716 0.293 0.993 0.592 2.784 2.883 1.768 0.103 3.820 3.674 3.393 5.017 3.341 2.815 8.731 4.641 5.346 5.370 2.613 3.191 2.915 4.744 1.992 2.074 1.345 2.522 1.817 2.050 2.772 3.572 1.587 0.815 0.747 0.692 0.181 1.271 0.795 2.784 0.312 1.315 1.019 1.018 1787 chr3 114264017 114308735 + 0 NA intron (NR_121662, intron 3 of 6) intron (NR_121662, intron 3 of 6) 56677 NM_001164347 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 1.001 nan 0.692 0.102 0.411 0.218 0.115 0.567 0.158 0.108 0.119 0.190 0.221 0.039 0.088 0.810 0.474 4.705 4.566 0.328 nan 0.633 0.280 0.246 0.292 nan 1.025 0.211 0.230 0.744 0.304 0.242 0.305 0.065 0.097 0.324 0.559 0.508 0.471 0.051 0.093 0.013 0.055 0.115 0.190 0.037 0.027 0.106 0.123 849 chr14 105957511 105969235 + 0 NA intron (NM_001134875, intron 5 of 7) intron (NM_001134875, intron 5 of 7) 5787 NM_001134875 283643 Hs.720306 NM_173608 ENSG00000185347 C14orf80 - chromosome 14 open reading frame 80 protein-coding 2.505 0.621 9.597 0.517 0.602 0.175 0.918 0.280 0.136 0.253 0.170 0.539 0.991 0.652 0.079 2.646 4.251 0.783 1.223 1.370 1.087 1.274 0.650 0.711 0.668 0.789 1.248 0.607 1.107 1.372 1.229 0.589 0.730 0.709 0.664 0.566 0.580 0.123 0.120 0.484 0.485 0.179 0.436 0.918 0.539 0.526 0.250 0.076 0.104 1681 chr21 37615653 37635971 + 0 NA intron (NM_005128, intron 22 of 36) AluSx|SINE|Alu -66675 NM_001320446 23515 Hs.421150 NM_015358 ENSG00000159256 MORC3 NXP2|ZCW5|ZCWCC3 MORC family CW-type zinc finger 3 protein-coding 1.092 0.702 1.486 0.095 0.299 0.222 0.240 0.214 0.140 0.131 0.110 0.206 0.620 0.118 0.082 1.937 1.951 2.045 1.274 0.447 0.499 0.313 0.135 7.996 8.476 0.419 0.710 0.471 0.498 1.571 1.100 0.839 1.708 0.163 0.216 0.612 1.249 nan 0.540 0.123 0.231 0.009 0.247 0.240 0.206 0.081 0.090 0.767 0.584 412 chr11 12762831 12811957 + 0 NA intron (NM_021961, intron 3 of 12) intron (NM_021961, intron 3 of 12) 91425 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 1.059 nan 1.661 1.249 0.804 0.425 0.961 0.651 0.085 1.003 0.524 2.650 1.243 0.066 0.057 nan 1.235 0.831 1.200 2.740 2.778 2.047 0.724 0.873 0.918 1.390 nan 2.524 2.451 0.772 0.635 0.466 0.864 1.663 1.833 0.521 1.602 2.491 nan 1.885 1.967 0.366 0.439 0.961 2.650 0.130 0.260 0.377 0.316 1596 chr20 24962482 24976271 + 0 NA intron (NM_020531, intron 1 of 8) intron (NM_020531, intron 1 of 8) 4049 NM_020531 57136 Hs.472330 NM_020531 ENSG00000101474 APMAP BSCv|C20orf3 adipocyte plasma membrane associated protein protein-coding 1.677 2.350 nan 1.112 0.886 0.533 0.860 0.842 0.036 0.441 0.234 1.021 4.236 0.432 0.073 1.836 2.039 1.149 1.894 1.997 1.897 2.298 0.738 1.184 1.323 1.560 2.027 3.737 3.863 2.511 2.065 1.000 1.714 2.511 4.205 0.976 1.627 2.157 0.999 1.453 0.465 0.938 0.115 0.860 1.021 0.555 1.287 0.481 0.465 2520 chr9 79622818 79634906 + 0 NA Intergenic Intergenic -5709 NM_001013735 442425 Hs.553843 NM_001013735 ENSG00000204612 FOXB2 bA159H20.4 forkhead box B2 protein-coding nan nan nan 1.154 0.482 0.293 1.724 0.060 0.041 0.156 0.152 6.533 1.740 0.046 0.079 0.162 0.067 0.588 nan 1.073 nan 1.327 0.303 0.233 0.225 0.115 0.189 0.567 0.743 0.169 0.086 0.072 0.146 0.732 0.558 0.057 0.168 1.677 0.986 0.220 0.100 0.071 0.098 1.724 6.533 0.032 0.369 0.035 0.051 1084 chr17 45958341 45975269 + 0 NA Intergenic AluJo|SINE|Alu 6377 NR_135480 102724532 Hs.729067 NR_135480 ENSG00000264920 LOC102724532 - uncharacterized LOC102724532 ncRNA 1.671 1.748 nan 1.810 2.395 1.130 1.105 0.983 0.267 0.788 0.413 1.518 3.266 1.178 0.119 1.738 1.955 1.898 2.817 2.421 nan 2.485 1.370 3.826 4.171 0.989 1.567 3.482 nan 2.797 2.388 1.417 2.135 1.667 2.097 1.926 2.442 2.168 0.943 3.883 1.083 0.377 0.739 1.105 1.518 0.559 0.904 0.542 0.681 2305 chr7 114169048 114174938 + 0 NA intron (NM_148898, intron 2 of 17) intron (NM_148898, intron 2 of 17) 105436 NM_001172767 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 2.072 1.008 2.514 0.208 1.796 0.766 0.435 1.726 0.219 0.374 0.364 3.152 0.899 0.095 0.173 0.575 0.339 0.363 1.631 0.399 0.561 5.129 8.641 0.262 0.383 2.588 3.306 2.409 6.321 1.010 0.696 0.148 0.402 3.752 4.315 1.357 2.485 0.907 0.721 0.142 2.330 0.861 0.656 0.435 3.152 0.247 0.275 0.118 1.102 944 chr16 28832937 28837228 + 0 NA intron (NM_001308230, intron 1 of 22) CpG 713 NM_145714 11273 Hs.460499 NM_007245 ENSG00000168488 ATXN2L A2D|A2LG|A2LP|A2RP ataxin 2 like protein-coding 7.441 4.873 7.003 12.350 10.730 4.932 8.507 4.736 0.449 2.522 1.108 9.162 19.356 8.231 0.204 6.716 7.228 7.423 10.326 11.419 10.717 13.913 7.436 22.673 23.749 4.606 6.468 14.573 20.017 12.136 13.410 7.594 11.798 11.583 13.598 7.080 9.768 4.397 2.091 8.986 6.245 3.434 6.079 8.507 9.162 2.782 5.172 3.811 2.588 2171 chr6 119201893 119236507 + 0 NA intron (NM_014034, intron 1 of 3) intron (NM_014034, intron 1 of 3) 3959 NM_014034 25842 Hs.292316 NM_014034 ENSG00000111875 ASF1A CGI-98|CIA|HSPC146 anti-silencing function 1A histone chaperone protein-coding nan 1.491 nan 1.686 0.803 0.435 0.999 0.663 0.126 0.493 0.342 0.979 1.865 0.759 0.140 1.745 1.492 1.273 2.140 2.663 nan nan 0.501 3.998 4.117 0.955 nan 1.292 2.046 2.694 2.304 0.597 1.383 1.623 2.571 2.161 nan 1.218 0.723 2.222 0.936 0.384 0.761 0.999 0.979 0.405 0.747 0.292 0.789 194 chr1 155033725 155067762 + 0 NA promoter-TSS (NM_004952) promoter-TSS (NM_004952) -605 NM_004952 1944 Hs.516656 NM_004952 ENSG00000143590 EFNA3 EFL2|EPLG3|Ehk1-L|LERK3 ephrin A3 protein-coding nan nan 2.627 0.752 1.176 0.735 1.741 0.186 0.109 0.436 0.294 0.937 5.809 0.961 0.100 3.381 5.046 2.024 2.762 3.364 nan 1.352 0.462 0.809 0.835 1.078 1.503 1.992 2.938 1.313 1.110 3.048 4.494 1.214 0.913 1.032 2.132 1.498 0.750 0.674 2.495 0.214 1.643 1.741 0.937 1.215 0.913 3.365 0.255 1559 chr2 241518446 241527317 + 0 NA non-coding (NR_103792, exon 1 of 1) non-coding (NR_103792, exon 1 of 1) 2852 NR_103792 101752400 Hs.585987 NR_103792 ENSG00000260942 CAPN10-AS1 locus959 CAPN10 antisense RNA 1 (head to head) ncRNA 2.544 nan 4.579 1.778 1.931 1.109 1.315 0.465 0.018 0.948 0.317 1.670 3.909 1.413 0.127 2.763 2.921 1.926 3.059 2.251 2.309 1.905 0.653 2.768 3.048 1.451 2.285 2.437 3.383 6.624 8.635 1.281 2.400 1.189 1.172 2.864 4.682 0.982 0.529 1.356 1.086 0.235 0.523 1.315 1.670 0.470 1.146 0.564 1.611 2443 chr8 143680445 143705763 + 0 NA 3' UTR (NM_015193, exon 3 of 3) 3' UTR (NM_015193, exon 3 of 3) 2729 NM_015193 23237 Hs.40888 NM_015193 ENSG00000198576 ARC Arg3.1 activity regulated cytoskeleton associated protein protein-coding 2.373 1.005 nan 0.152 1.421 0.827 1.780 0.081 0.082 0.254 0.193 0.491 2.226 0.072 0.043 0.834 1.288 0.095 0.205 nan 2.616 nan 0.163 0.262 0.215 0.410 0.746 0.730 0.982 1.561 1.787 0.558 0.677 0.607 0.411 0.432 0.686 1.702 0.937 1.420 0.901 0.079 0.047 1.780 0.491 0.928 1.257 0.214 0.064 1583 chr20 18035932 18041097 + 0 NA promoter-TSS (NM_021220) promoter-TSS (NM_021220) 12 NM_021220 58495 Hs.661013 NM_021220 ENSG00000125850 OVOL2 EUROIMAGE566589|PPCD1|ZNF339 ovo like zinc finger 2 protein-coding 1.808 5.681 3.923 6.881 6.858 3.414 1.772 0.058 0.032 2.579 1.744 8.242 11.953 0.191 0.122 2.404 4.950 3.249 3.798 13.407 10.538 6.996 1.421 7.747 7.234 0.099 0.374 4.498 5.539 1.310 1.520 3.205 7.836 9.158 6.686 0.204 0.557 2.909 1.736 4.214 4.513 3.456 2.039 1.772 8.242 0.505 0.676 8.061 0.055 1627 chr20 49573918 49576292 + 0 NA promoter-TSS (NM_003859) promoter-TSS (NM_003859) -4 NR_133648 8813 Hs.654951 NM_003859 ENSG00000000419 DPM1 CDGIE|MPDS dolichyl-phosphate mannosyltransferase subunit 1, catalytic protein-coding 11.019 8.892 7.323 7.367 7.541 3.902 5.278 6.348 0.406 2.785 1.247 6.034 12.306 5.306 0.054 15.735 13.049 10.046 16.211 12.279 14.119 17.100 14.953 20.614 21.493 7.846 8.325 11.139 17.025 18.323 17.900 11.830 17.324 5.761 7.480 15.581 8.025 6.773 4.913 4.406 3.955 0.599 2.825 5.278 6.034 1.665 3.020 2.002 2.481 1632 chr20 50600698 50669148 + 0 NA Intergenic MIR|SINE|MIR 87100 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 0.921 1.177 0.648 0.117 0.292 0.129 0.419 1.363 0.423 0.131 0.136 0.139 0.457 3.381 0.212 0.573 nan 0.230 0.498 0.254 0.285 1.366 0.372 0.310 0.337 0.471 0.811 0.287 0.357 1.128 1.076 0.288 0.383 0.339 0.468 0.483 1.151 0.374 0.481 0.034 0.085 0.123 0.238 0.419 0.139 0.180 0.056 0.075 0.145 2052 chr6 291205 337490 + 0 NA intron (NR_104473, intron 3 of 5) intron (NR_104473, intron 3 of 5) 22290 NR_104473 56940 Hs.29106 NM_020185 ENSG00000112679 DUSP22 JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX dual specificity phosphatase 22 protein-coding 1.349 1.018 1.428 1.844 1.318 0.621 0.463 0.315 0.150 1.564 0.805 2.532 1.554 0.576 0.106 1.155 1.399 0.747 1.186 1.082 1.112 3.253 1.182 1.443 1.439 0.445 0.817 1.358 1.709 0.834 0.553 0.477 0.691 1.244 0.902 0.428 0.526 2.188 1.333 1.313 3.079 0.216 0.186 0.463 2.532 0.130 0.386 0.169 0.153 2365 chr8 59569540 59573468 + 0 NA intron (NM_003580, intron 1 of 30) intron (NM_003580, intron 1 of 30) 462 NM_001144772 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 11.120 6.373 5.522 3.261 5.730 3.103 7.228 2.740 0.205 3.105 1.912 7.311 9.836 5.459 0.130 9.446 11.657 9.014 13.818 19.087 18.428 10.084 5.754 8.583 8.082 5.838 nan 6.239 9.662 10.900 11.949 6.131 11.150 10.724 7.610 11.360 7.430 5.937 3.916 4.159 4.581 1.434 5.372 7.228 7.311 0.886 5.268 2.325 5.171 2093 chr6 26507764 26524161 + 0 NA Intergenic L2a|LINE|L2 -5972 NR_026790 493812 Hs.272939 NR_026790 HCG11 CTA-14H9.3|bK14H9.3 HLA complex group 11 (non-protein coding) ncRNA 2.677 1.617 nan 0.460 0.892 0.519 0.380 0.534 0.078 0.421 0.192 0.446 nan 1.359 0.127 1.576 1.277 0.544 nan 1.489 1.485 nan 1.338 1.290 1.338 1.113 1.435 2.955 4.663 1.372 0.974 0.265 0.565 1.417 1.478 3.681 6.085 1.115 0.633 0.078 0.399 0.138 0.189 0.380 0.446 0.320 0.543 0.218 2.656 627 chr12 57844315 57856796 + 0 NA exon (NM_031479, exon 2 of 2) exon (NM_031479, exon 2 of 2) 1481 NM_031479 83729 Hs.632713 NM_031479 ENSG00000139269 INHBE - inhibin beta E subunit protein-coding nan 1.839 2.412 1.959 1.499 0.912 1.520 1.236 0.130 1.546 0.264 0.580 1.559 2.547 0.130 nan 1.972 0.899 1.335 1.274 nan 3.319 1.128 6.259 6.814 0.950 nan 5.402 nan 3.930 5.003 2.115 2.025 2.646 4.421 2.947 9.114 1.746 0.998 1.521 2.583 0.434 1.865 1.520 0.580 1.045 0.934 0.905 2.564 1985 chr5 69203905 69211585 + 0 NA Intergenic Intergenic -113327 NM_021967 8293 Hs.726820 NM_021967 ENSG00000172058 SERF1A 4F5|FAM2A|H4F5|SERF1|SMAM1 small EDRK-rich factor 1A protein-coding 2.465 6.009 2.572 0.447 0.552 0.337 0.473 0.355 0.255 0.163 0.147 0.257 0.477 0.226 0.174 0.398 0.402 1.127 1.355 0.820 0.995 1.524 0.649 0.883 0.761 1.388 2.311 0.815 1.013 1.166 0.765 0.248 0.605 0.456 0.599 0.719 1.000 1.047 0.615 0.065 0.401 0.248 0.318 0.473 0.257 0.052 0.079 0.039 0.151 108 chr1 44397906 44422114 + 0 NA Intergenic L1MEd|LINE|L1 -2468 NM_014652 9670 Hs.158497 NM_014652 ENSG00000117408 IPO13 IMP13|KAP13|LGL2|RANBP13 importin 13 protein-coding nan 2.211 nan 0.796 2.494 1.624 1.999 1.031 0.153 0.564 0.367 2.327 1.965 0.654 0.095 1.545 2.162 1.316 2.055 3.608 3.443 1.617 0.890 1.686 1.826 1.464 nan nan 10.018 3.078 3.136 2.330 nan 0.846 1.034 1.860 3.350 1.549 0.865 2.805 2.587 0.207 0.639 1.999 2.327 0.974 0.821 1.619 1.016 467 chr11 64831883 64836769 + 0 NA Intergenic Intergenic -8317 NM_005468 10004 Hs.13967 NM_005468 ENSG00000168060 NAALADL1 I100|NAALADASEL N-acetylated alpha-linked acidic dipeptidase like 1 protein-coding nan 0.565 0.895 2.678 4.233 2.395 0.609 0.136 0.163 2.401 0.901 5.842 0.950 0.111 0.099 6.212 8.324 0.318 0.473 13.333 13.768 6.307 1.804 0.676 0.780 0.282 0.640 4.213 5.302 0.396 0.339 0.935 0.923 1.128 0.914 0.496 1.124 0.792 0.810 4.362 1.644 0.352 5.980 0.609 5.842 1.474 0.069 0.242 0.176 1108 chr17 69418500 69436050 + 0 NA Intergenic Intergenic -228955 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility candidate 17 (non-protein coding) ncRNA 0.901 nan 0.521 0.404 6.101 3.322 0.433 0.277 0.083 0.491 0.389 2.422 3.780 0.074 0.134 0.522 0.410 0.317 0.981 1.660 1.839 2.510 0.828 0.245 0.234 0.658 nan 0.706 0.700 0.722 0.329 0.183 0.398 1.074 2.161 0.131 0.194 0.943 0.607 0.278 1.081 0.318 0.045 0.433 2.422 0.100 0.086 0.129 0.028 903 chr15 93420505 93432098 + 0 NA promoter-TSS (NR_037602) promoter-TSS (NR_037602) -225 NR_037602 100507217 Hs.622504 NR_037600 LINC01578 - long intergenic non-protein coding RNA 1578 ncRNA nan nan nan 3.388 4.926 2.692 2.656 2.847 0.283 2.426 1.335 5.336 9.076 3.010 0.117 3.116 4.037 4.605 6.781 6.465 6.454 nan 2.222 10.859 10.893 3.698 4.476 6.041 8.196 nan 11.969 3.304 6.955 3.181 2.663 5.844 nan 2.620 1.305 2.151 8.193 0.551 2.337 2.656 5.336 0.672 2.461 2.128 1.581 2510 chr9 37961363 37968202 + 0 NA intron (NM_003028, intron 3 of 5) intron (NM_003028, intron 3 of 5) -60432 NM_033412 92014 Hs.634120 NM_033412 ENSG00000122696 SLC25A51 CG7943|MCART1 solute carrier family 25 member 51 protein-coding 0.698 nan 2.315 2.820 4.307 1.900 0.355 0.828 0.164 1.056 0.384 3.289 1.888 0.048 0.075 3.781 4.512 8.835 12.734 0.596 0.660 2.544 0.912 1.486 1.474 0.959 1.502 2.549 5.003 0.324 0.347 3.495 5.757 0.858 1.214 0.249 0.468 5.580 2.730 0.739 0.288 0.138 0.313 0.355 3.289 0.085 1.903 2.459 0.109 1428 chr2 39345849 39352823 + 0 NA Intergenic AluSq|SINE|Alu -1732 NM_005633 6654 Hs.709893 NM_005633 ENSG00000115904 SOS1 GF1|GGF1|GINGF|HGF|NS4 SOS Ras/Rac guanine nucleotide exchange factor 1 protein-coding 4.542 nan nan 6.208 4.632 2.785 4.160 1.896 0.303 4.214 1.740 6.167 8.633 5.007 0.200 6.787 7.491 7.899 11.753 11.061 8.594 11.987 5.238 9.615 nan 3.952 5.850 8.828 12.143 nan 6.672 3.753 7.006 2.257 1.880 6.586 8.159 4.294 2.396 3.723 6.854 0.570 2.490 4.160 6.167 1.564 3.619 2.268 3.960 801 chr14 63740158 63754872 + 0 NA intron (NM_020663, intron 2 of 4) intron (NM_020663, intron 2 of 4) 38078 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone beta 5 protein-coding nan nan 1.121 0.917 0.520 0.298 0.609 0.112 0.120 0.512 0.292 1.302 0.895 0.533 0.140 0.270 0.128 0.318 0.553 1.885 2.370 3.856 0.610 nan 0.361 0.479 0.679 2.385 nan 0.926 0.430 0.114 0.232 1.415 1.538 0.209 0.465 3.624 1.547 0.555 0.424 0.292 0.384 0.609 1.302 0.106 0.083 0.041 0.223 1174 chr18 35139177 35160043 + 0 NA Intergenic Intergenic -3610 NM_001025087 56853 Hs.435976 NM_020180 ENSG00000101489 CELF4 BRUNOL4|CELF-4 CUGBP, Elav-like family member 4 protein-coding nan 2.041 1.089 2.168 1.983 1.109 4.076 0.022 0.023 0.916 0.701 3.626 3.462 0.089 0.042 1.846 2.300 0.246 0.351 6.205 5.707 4.412 1.680 0.128 0.141 1.460 1.825 nan 3.659 1.743 2.043 0.482 0.698 3.867 3.595 0.631 0.923 4.897 2.453 6.328 1.402 1.215 1.024 4.076 3.626 0.650 1.150 0.214 0.302 1774 chr3 58146208 58153211 + 0 NA non-coding (NR_135534, exon 2 of 2) non-coding (NR_135534, exon 2 of 2) 6653 NR_135534 105377105 Hs.613914 NR_135534 ENSG00000244161 FLNB-AS1 - FLNB antisense RNA 1 ncRNA 1.839 2.066 nan 1.797 0.115 0.056 0.382 0.470 0.252 1.164 0.292 0.171 1.176 0.325 0.055 0.351 0.286 0.332 0.667 0.707 0.838 4.933 1.830 0.255 0.274 0.313 0.656 5.156 5.173 nan 0.311 0.185 0.196 3.042 3.140 0.277 0.564 2.090 1.332 0.373 0.547 0.832 0.266 0.382 0.171 0.568 5.078 0.014 0.081 750 chr14 20921972 20924855 + 0 NA promoter-TSS (NM_017807) promoter-TSS (NM_017807) 123 NM_080649 328 Hs.73722 NM_001641 ENSG00000100823 APEX1 APE|APE1|APEN|APEX|APX|HAP1|REF1 apurinic/apyrimidinic endodeoxyribonuclease 1 protein-coding 17.307 5.864 7.678 11.501 7.856 3.724 5.662 7.804 0.371 2.300 0.973 6.484 14.510 7.179 0.215 8.299 7.056 12.088 16.950 17.335 15.169 11.676 7.829 25.809 26.821 10.182 12.631 15.161 20.470 18.587 17.895 7.696 10.236 11.631 13.447 9.685 8.601 7.034 4.362 8.191 8.474 2.085 5.283 5.662 6.484 4.006 4.559 2.967 2.501 573 chr12 12029353 12040683 + 0 NA intron (NM_001987, intron 5 of 7) intron (NM_001987, intron 5 of 7) -188860 NM_138723 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 0.965 1.653 2.487 5.056 1.182 0.404 0.797 0.150 0.070 1.990 1.029 2.801 3.317 0.073 0.108 0.346 0.625 0.867 3.539 nan 2.029 9.487 2.498 1.144 1.331 0.529 0.901 5.412 4.878 0.406 0.285 0.378 0.709 0.753 1.100 0.480 0.663 1.856 0.815 0.241 0.286 0.222 0.035 0.797 2.801 0.236 0.675 0.168 0.142 1580 chr20 15791968 15838606 + 0 NA intron (NM_080676, intron 8 of 16) L2c|LINE|L2 88672 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 1.050 nan 1.011 0.108 0.211 0.093 0.151 0.227 0.089 0.047 0.092 0.087 0.361 0.035 0.085 0.724 0.523 0.170 0.322 0.321 0.408 0.155 0.080 0.329 0.287 0.792 0.939 0.374 0.420 2.036 1.678 0.173 0.333 0.215 0.252 1.223 3.947 0.488 0.492 0.012 0.086 0.045 0.133 0.151 0.087 0.084 0.046 0.081 2.511 1946 chr5 3917965 3922946 + 0 NA Intergenic L1MA3|LINE|L1 324287 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 0.407 0.844 0.972 0.136 0.215 0.162 0.154 0.222 0.130 0.188 0.269 0.128 0.543 0.073 4.058 2.759 8.822 nan 0.264 0.404 0.063 0.102 0.037 0.066 0.216 0.312 nan 0.151 nan 0.199 1.811 3.425 0.068 0.061 0.091 0.158 0.247 nan 0.033 0.054 0.052 0.154 0.128 0.062 1.264 0.024 1544 chr2 219844386 219850284 + 0 NA intron (NM_017521, intron 2 of 2) MER91A|DNA|hAT-Tip100 3044 NM_017521 54738 Hs.234759 NM_017521 ENSG00000163497 FEV HSRNAFEV|PET-1 FEV, ETS transcription factor protein-coding nan 2.167 nan 0.773 1.687 0.722 3.971 0.052 0.044 0.375 0.152 1.089 2.471 0.767 0.076 1.064 1.241 0.152 0.167 1.872 1.228 1.939 0.352 0.165 0.193 1.052 1.220 0.958 nan 2.702 2.289 0.941 2.124 0.192 0.289 0.414 1.563 0.440 0.217 9.809 0.136 0.130 0.253 3.971 1.089 0.408 1.249 1.693 0.413 1351 chr19 48406569 48420955 + 0 NA Intergenic L1P4|LINE|L1 -2546 NR_024219 100170223 Hs.717052 NR_024219 SNAR-C5 - small ILF3/NF90-associated RNA C5 snRNA 1.711 1.398 1.569 0.147 1.105 0.557 0.472 0.216 0.199 0.105 0.202 0.141 0.373 12.263 0.792 0.544 0.340 0.238 0.332 0.531 0.614 0.914 0.387 0.626 0.528 0.510 0.899 0.606 0.661 1.120 0.306 0.313 0.464 0.189 0.383 0.789 1.741 0.680 0.869 0.058 0.174 0.101 0.121 0.472 0.141 0.088 0.333 0.108 0.352 619 chr12 55384061 55418240 + 0 NA Intergenic THE1B|LTR|ERVL-MaLR -12579 NM_021191 58158 Hs.591024 NM_021191 ENSG00000123307 NEUROD4 ATH-3|ATH3|Atoh3|MATH-3|MATH3|bHLHa4 neuronal differentiation 4 protein-coding nan 0.826 0.973 0.062 0.551 0.277 0.605 0.085 0.062 0.067 0.105 0.175 0.452 0.044 0.075 nan 0.617 0.157 0.283 0.239 nan 0.213 0.105 0.135 0.133 4.099 nan 0.679 nan 3.708 3.008 0.114 0.179 3.572 4.381 0.868 2.545 0.744 0.687 0.002 0.180 1.517 0.882 0.605 0.175 0.923 0.048 0.035 0.634 216 chr1 158968100 158983154 + 0 NA Intergenic Intergenic -4055 NM_001206567 3428 Hs.380250 NM_005531 ENSG00000163565 IFI16 IFNGIP1|PYHIN2 interferon gamma inducible protein 16 protein-coding nan nan 0.837 0.047 0.559 0.319 0.077 3.458 0.267 0.322 0.256 0.032 0.326 0.029 0.115 0.347 0.157 2.256 5.805 0.281 nan 0.105 0.064 0.086 0.077 0.374 0.494 0.503 0.948 0.229 0.124 0.237 0.318 0.061 0.078 0.232 0.499 1.711 1.038 0.038 0.107 0.006 0.021 0.077 0.032 0.013 0.460 0.072 0.091 1850 chr3 177181090 177199655 + 0 NA intron (NR_047568, intron 1 of 3) L1ME4a|LINE|L1 30663 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 1.194 1.267 0.826 0.279 0.956 0.492 0.643 1.493 0.445 0.168 0.230 0.295 0.320 0.058 0.141 0.263 0.223 1.416 6.064 0.425 0.476 1.302 0.392 0.254 0.268 0.649 0.943 0.538 0.474 0.685 0.293 0.173 0.338 0.224 0.240 0.343 0.715 0.793 0.560 0.059 0.105 0.026 0.219 0.643 0.295 0.088 0.467 0.134 0.135 961 chr16 31083301 31086975 + 0 NA promoter-TSS (NM_014699) promoter-TSS (NM_014699) -315 NM_001172668 79759 Hs.102928 NM_024706 ENSG00000167394 ZNF668 - zinc finger protein 668 protein-coding 9.051 4.012 6.546 8.275 6.044 3.315 4.963 3.531 0.393 2.544 0.914 7.765 19.456 5.238 0.102 5.978 7.515 8.489 11.920 9.946 8.618 16.280 5.215 11.476 11.815 6.210 8.559 14.832 16.880 8.843 10.036 3.628 7.848 9.868 10.963 4.232 5.892 5.509 2.608 4.922 3.854 1.767 3.096 4.963 7.765 2.808 6.134 2.858 1.918 1713 chr22 29212455 29225478 + 0 NA Intergenic Intergenic -22406 NM_001079539 7494 Hs.437638 NM_005080 ENSG00000100219 XBP1 TREB-5|TREB5|XBP-1|XBP2 X-box binding protein 1 protein-coding nan 1.753 1.419 0.966 5.582 2.826 0.394 0.177 0.161 0.653 0.267 2.718 1.158 0.100 0.092 0.563 0.697 0.542 nan 1.433 1.263 4.114 1.248 1.808 1.993 0.556 nan 5.544 5.407 0.669 0.350 0.325 0.644 1.522 1.969 0.332 nan 4.231 1.752 1.618 0.498 0.445 0.891 0.394 2.718 0.082 1.894 0.182 0.152 712 chr13 52333341 52346291 + 0 NA Intergenic Intergenic 38482 NM_001031719 79758 Hs.266728 NM_024705 ENSG00000102796 DHRS12 SDR40C1 dehydrogenase/reductase 12 protein-coding 0.802 nan nan 0.433 0.193 0.086 0.115 0.351 0.100 0.085 0.083 0.617 0.728 0.041 0.076 0.545 0.722 0.200 0.359 0.626 0.680 nan 0.278 0.303 0.252 0.324 0.486 1.021 1.210 0.549 0.407 0.561 0.855 0.168 0.197 0.826 nan 0.341 0.263 0.654 3.985 0.029 0.183 0.115 0.617 0.075 0.086 0.352 0.295 1367 chr19 50368598 50374288 + 0 NA promoter-TSS (NM_007254) promoter-TSS (NM_007254) -621 NM_007254 11284 Hs.78016 NM_007254 ENSG00000039650 PNKP AOA4|EIEE10|MCSZ|PNK polynucleotide kinase 3'-phosphatase protein-coding 4.914 4.024 3.386 4.865 9.340 5.252 3.219 1.681 0.657 1.856 0.809 4.068 9.898 4.753 0.190 2.301 3.471 4.135 6.023 7.835 4.943 11.748 5.157 9.025 9.571 5.066 6.190 7.882 12.235 7.008 6.124 1.165 3.036 5.440 4.946 3.686 6.359 4.744 2.264 4.539 5.778 1.618 2.116 3.219 4.068 1.781 3.331 1.570 1.976 2068 chr6 14765723 14827104 + 0 NA Intergenic Intergenic -449793 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 1.399 nan 1.115 0.773 0.537 0.309 1.127 0.250 0.094 0.133 0.105 0.898 0.353 0.062 0.077 0.508 0.538 1.706 2.145 0.811 0.745 0.790 0.319 0.340 0.322 0.645 0.878 0.596 0.594 0.843 0.613 0.444 0.650 0.703 1.083 0.750 3.320 0.655 0.525 0.158 0.352 0.144 0.207 1.127 0.898 0.175 0.042 0.251 0.865 2258 chr7 44884890 44896941 + 0 NA Intergenic Intergenic -3190 NM_012412 94239 Hs.488189 NM_012412 ENSG00000105968 H2AFV H2A.Z-2|H2AV H2A histone family member V protein-coding 3.967 3.286 nan 2.381 2.911 1.393 2.257 1.702 0.362 1.686 0.881 2.355 5.962 2.631 0.204 3.991 4.020 2.580 3.590 5.359 5.136 4.376 2.675 4.029 4.213 2.864 3.393 3.469 5.716 3.757 4.059 2.365 3.511 4.336 4.860 4.112 3.605 1.978 1.232 3.397 2.289 0.771 1.609 2.257 2.355 0.522 1.551 0.819 1.161 1625 chr20 49339638 49367912 + 0 NA intron (NM_032521, intron 1 of 2) intron (NM_032521, intron 1 of 2) 5694 NM_032521 84612 Hs.589848 NM_032521 ENSG00000124171 PARD6B PAR6B par-6 family cell polarity regulator beta protein-coding nan nan 1.372 0.938 0.690 0.432 0.745 0.363 0.227 0.288 0.216 0.583 1.528 0.698 0.141 2.324 3.027 1.352 2.412 1.144 1.122 nan 0.469 1.388 1.365 0.814 1.316 1.831 2.409 nan 1.489 1.434 3.011 0.274 0.250 1.686 4.809 0.908 0.649 0.469 0.663 0.068 0.528 0.745 0.583 0.177 0.330 1.677 1.581 1967 chr5 49961412 49966691 + 0 NA intron (NM_001331028, intron 2 of 25) intron (NM_001331028, intron 2 of 25) 671 NM_001331028 79668 Hs.369581 NM_024615 ENSG00000151883 PARP8 ARTD16|pART16 poly(ADP-ribose) polymerase family member 8 protein-coding 2.287 7.535 2.105 0.603 0.416 0.397 2.671 0.723 0.245 2.043 0.864 1.956 14.292 7.300 0.188 1.594 2.459 6.925 9.797 6.126 5.196 10.656 4.772 7.992 7.163 0.165 0.356 1.816 3.851 3.188 4.843 8.896 13.349 0.733 0.724 0.385 0.454 2.395 1.667 4.440 10.413 0.484 1.116 2.671 1.956 3.386 6.274 0.583 456 chr11 62471831 62482339 + 0 NA promoter-TSS (NR_037948) promoter-TSS (NR_037948) 6 NR_037949 26580 Hs.533709 NM_032667 ENSG00000168000 BSCL2 GNG3LG|HMN5|PELD|SPG17 BSCL2, seipin lipid droplet biogenesis associated protein-coding nan 2.516 1.834 3.808 2.412 1.556 3.334 0.654 0.095 1.374 0.765 3.189 7.048 1.956 0.171 6.402 5.757 3.225 4.542 7.066 6.930 7.287 3.313 1.030 0.982 1.482 1.881 5.122 7.311 2.265 1.896 3.441 4.210 4.257 5.123 2.419 2.682 3.218 1.648 4.549 3.145 0.946 1.902 3.334 3.189 0.984 2.434 2.365 0.324 2469 chr9 2254048 2270782 + 0 NA Intergenic MIRc|SINE|MIR 103959 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 0.897 1.660 0.989 0.438 0.668 0.307 1.596 0.077 0.049 1.224 0.448 1.540 1.676 0.032 0.113 0.258 0.183 0.216 0.398 0.919 1.116 3.711 1.507 0.233 0.246 1.042 1.736 1.555 1.003 0.437 0.302 0.215 0.272 0.487 0.580 0.248 nan 4.438 2.340 1.544 1.697 0.086 0.047 1.596 1.540 0.168 0.127 0.053 0.052 625 chr12 57067510 57084925 + 0 NA intron (NM_006601, intron 1 of 7) AluJo|SINE|Alu 5564 NR_104219 10728 Hs.50425 NM_006601 ENSG00000110958 PTGES3 P23|TEBP|cPGES prostaglandin E synthase 3 protein-coding nan 2.285 1.863 2.571 3.686 1.808 2.349 0.882 0.229 1.739 0.958 2.133 3.890 1.261 0.129 nan 3.387 4.703 4.869 4.236 nan 4.422 2.200 7.717 8.260 2.243 nan 4.004 nan 3.524 3.678 2.051 4.337 3.588 4.077 4.891 5.374 2.439 1.423 1.252 2.639 0.905 1.709 2.349 2.133 0.686 1.385 1.136 2.396 2197 chr6 158651945 158669467 + 0 NA Intergenic SVA_F|Other|Other 71327 NM_207118 404672 Hs.356224 NM_207118 ENSG00000272047 GTF2H5 C6orf175|TFB5|TFIIH|TGF2H5|TTD|TTD-A|TTD3|TTDA|bA120J8.2 general transcription factor IIH subunit 5 protein-coding nan 1.268 2.054 1.615 0.583 0.323 1.514 0.619 0.128 0.510 0.252 1.598 2.680 0.985 0.103 2.897 3.330 1.906 2.391 1.792 nan 2.586 0.932 3.535 3.379 0.744 1.057 2.345 3.152 2.267 1.800 1.189 2.267 1.718 2.270 2.774 4.955 0.719 0.389 1.159 1.445 0.598 0.499 1.514 1.598 0.326 0.994 0.814 1.506 381 chr10 126824264 126851787 + 0 NA intron (NM_001290214, intron 1 of 10) AmnSINE1|SINE|Deu 9662 NM_001321014 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding nan 2.435 1.715 2.096 1.628 0.816 0.641 0.137 0.053 0.889 0.342 1.727 7.319 0.915 0.078 1.996 2.587 1.579 3.186 1.222 1.061 1.963 0.651 1.939 1.902 0.755 1.243 4.643 6.209 1.040 1.052 1.247 2.926 1.127 1.384 1.760 1.707 1.696 0.882 1.795 2.065 0.284 0.743 0.641 1.727 0.320 1.603 1.698 0.683 1993 chr5 71575625 71605203 + 0 NA intron (NM_001286748, intron 4 of 11) L1MC|LINE|L1 25670 NM_001286748 23107 Hs.482491 NM_015084 ENSG00000113048 MRPS27 MRP-S27|S27mt mitochondrial ribosomal protein S27 protein-coding 1.598 nan 1.529 0.462 0.719 0.318 0.586 1.552 0.145 0.312 0.331 0.624 0.751 0.471 0.118 0.916 0.875 0.811 1.031 2.102 1.711 nan 0.556 0.927 0.838 5.451 nan 1.091 1.254 3.654 3.043 0.453 0.712 1.229 1.691 1.113 2.360 1.438 0.692 1.147 0.949 0.430 0.617 0.586 0.624 0.534 1.385 0.257 0.701 403 chr11 10827990 10832167 + 0 NA promoter-TSS (NM_001172705) promoter-TSS (NM_001172705) 504 NM_001418 1982 Hs.183684 NM_001418 ENSG00000110321 EIF4G2 AAG1|DAP5|NAT1|P97 eukaryotic translation initiation factor 4 gamma 2 protein-coding 6.205 6.128 8.871 11.078 6.838 3.451 6.685 4.045 0.229 4.295 1.640 13.114 15.665 6.209 0.179 nan 14.668 10.428 14.438 20.344 18.921 13.836 7.112 15.991 17.569 7.116 nan 8.200 11.272 12.810 13.765 8.256 17.106 10.668 10.040 9.267 6.891 4.919 nan 6.616 9.133 2.199 4.036 6.685 13.114 1.444 1.555 4.703 2.630 610 chr12 54068548 54073564 + 0 NA promoter-TSS (NM_005176) promoter-TSS (NM_005176) -544 NM_001002031 517 Hs.524464 NM_005176 ENSG00000135390 ATP5G2 ATP5A ATP synthase, H+ transporting, mitochondrial Fo complex subunit C2 (subunit 9) protein-coding nan 2.044 2.121 1.928 8.092 4.735 1.891 0.930 0.162 1.027 0.775 4.131 5.592 1.276 0.146 nan 3.405 3.524 4.892 6.702 nan 10.739 4.587 7.514 8.542 4.378 nan 5.497 nan 10.841 10.430 2.903 3.800 5.024 5.124 7.783 10.718 3.410 1.844 0.692 5.085 0.839 0.743 1.891 4.131 2.181 5.832 1.096 5.361 1305 chr19 39171602 39187654 + 0 NA intron (NM_001322033, intron 1 of 20) AluSx3|SINE|Alu 41372 NM_004924 81 Hs.270291 NM_004924 ENSG00000130402 ACTN4 ACTININ-4|FSGS|FSGS1 actinin alpha 4 protein-coding 1.831 1.744 1.411 1.112 1.020 0.466 0.772 1.842 0.500 0.565 0.147 0.365 3.518 0.210 0.114 0.473 0.816 2.115 7.059 0.685 0.986 2.493 0.611 1.766 1.894 0.945 1.520 1.223 1.654 nan 0.591 0.656 1.030 2.237 3.743 1.054 2.230 1.168 0.784 0.207 0.227 0.594 0.128 0.772 0.365 0.545 2.344 0.402 0.973 1259 chr19 10757619 10769948 + 0 NA non-coding (NR_024333, exon 1 of 1) non-coding (NR_024333, exon 1 of 1) 765 NR_024333 147727 Hs.631616 NR_024333 ENSG00000267100 ILF3-AS1 - ILF3 antisense RNA 1 (head to head) ncRNA 4.144 2.291 4.145 2.994 4.092 2.227 3.827 1.274 0.273 1.847 0.677 3.150 6.583 1.805 0.094 4.497 4.299 4.635 6.074 7.180 6.672 6.798 3.265 8.432 8.891 2.821 4.145 5.739 7.977 7.688 9.059 1.940 3.777 4.730 5.264 5.120 3.802 2.771 1.887 3.734 1.768 1.056 1.294 3.827 3.150 1.361 1.524 0.675 1.276 709 chr13 43843008 43883169 + 0 NA intron (NM_017993, intron 12 of 16) L1PA16|LINE|L1 -159900 NR_120399 100874130 Hs.738887 NR_120399 ENOX1-AS2 - ENOX1 antisense RNA 2 ncRNA 1.313 0.987 1.118 0.171 0.169 0.056 0.255 0.288 0.100 0.389 0.303 0.112 1.726 0.021 0.060 0.571 0.352 0.122 0.211 0.475 0.566 1.951 0.504 0.131 0.160 1.180 2.005 0.175 0.205 0.451 0.225 0.413 0.533 1.291 1.406 0.453 0.959 1.138 0.678 1.933 0.442 0.317 0.055 0.255 0.112 0.129 0.040 0.160 0.167 415 chr11 13348452 13360976 + 0 NA intron (NM_001297719, intron 3 of 19) AluSx|SINE|Alu 55440 NM_001297722 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 0.806 nan 0.847 2.391 1.483 0.869 1.478 1.112 0.115 0.603 0.320 1.142 3.323 0.074 0.083 nan 0.696 0.758 1.207 2.498 2.592 1.038 0.263 0.608 0.685 0.717 nan 2.007 2.183 0.496 0.320 0.420 0.601 1.802 2.335 0.213 0.448 1.464 nan 4.585 1.703 0.496 0.158 1.478 1.142 0.046 0.212 0.142 0.049 333 chr10 1577524 1618524 + 0 NA intron (NR_033387, intron 1 of 1) AluSx|SINE|Alu 29199 NR_033387 642394 Hs.568831 NM_001098830 ENSG00000205696 ADARB2-AS1 C10orf109|NCRNA00168|bA466B20.1 ADARB2 antisense RNA 1 ncRNA 0.497 0.389 0.629 0.776 0.819 0.356 0.270 0.086 0.137 0.689 0.364 3.736 0.832 0.043 0.089 0.610 0.837 0.123 0.161 1.601 1.466 0.710 0.275 0.219 0.267 0.099 0.194 2.463 3.196 0.193 0.105 0.394 0.712 0.030 0.036 0.082 0.111 0.649 0.444 0.944 0.871 0.009 0.051 0.270 3.736 0.103 0.332 0.280 0.027 1665 chr21 27484585 27502004 + 0 NA intron (NM_001136131, intron 1 of 15) intron (NM_001136131, intron 1 of 15) 19414 NM_001136016 351 Hs.434980 NM_000484 ENSG00000142192 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2 amyloid beta precursor protein protein-coding 1.240 1.000 1.342 0.695 1.815 0.911 0.505 1.137 0.194 1.192 0.615 2.069 0.862 0.181 0.083 0.598 0.665 1.704 5.602 1.388 1.639 2.346 1.961 0.684 0.651 1.951 2.564 0.907 1.804 0.809 0.540 0.341 0.620 1.000 1.322 0.461 nan 2.905 1.601 0.317 0.283 0.174 0.112 0.505 2.069 0.240 0.088 0.123 0.164 2324 chr7 139757839 139764238 + 0 NA intron (NM_022750, intron 1 of 11) MLT1J1|LTR|ERVL-MaLR 2483 NM_022750 64761 Hs.12646 NM_022750 ENSG00000059378 PARP12 ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1 poly(ADP-ribose) polymerase family member 12 protein-coding nan nan nan 1.374 1.520 0.626 1.378 2.099 0.299 1.531 0.745 7.062 4.915 1.652 0.100 1.345 1.239 2.960 5.008 3.189 3.100 nan 1.091 5.614 5.721 0.171 nan 2.012 3.993 nan 1.181 2.598 2.832 1.149 1.302 0.476 0.444 3.038 nan 3.579 2.431 0.134 0.494 1.378 7.062 0.137 0.398 0.496 0.097 1193 chr18 46661119 46670168 + 0 NA intron (NM_017653, intron 14 of 16) HAL1|LINE|L1 -89505 NR_039898 100616420 NR_039898 ENSG00000263849 MIR4744 - microRNA 4744 ncRNA nan 1.057 0.869 0.150 0.393 0.229 5.536 0.075 0.106 0.173 0.081 0.423 0.276 0.066 0.085 0.433 0.340 0.194 0.381 0.658 0.581 9.027 2.998 0.102 0.170 0.362 0.562 0.202 0.142 0.350 0.221 0.131 0.279 4.399 5.526 0.447 nan 1.371 1.012 0.056 0.079 1.265 0.210 5.536 0.423 0.021 0.056 0.066 0.150 2440 chr8 143412970 143442095 + 0 NA intron (NM_145003, intron 2 of 13) intron (NM_145003, intron 2 of 13) 57078 NM_145003 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 1.332 0.870 nan 0.659 0.555 0.276 0.218 0.057 0.056 0.237 0.151 2.374 1.563 0.022 0.056 0.744 1.338 0.209 0.260 nan 4.963 nan 0.184 0.517 0.438 0.459 0.712 2.281 2.791 1.020 1.490 0.376 0.478 0.351 0.312 0.200 0.344 1.240 0.747 5.205 1.024 0.075 0.169 0.218 2.374 0.349 0.665 0.047 0.086 1829 chr3 166658388 166663655 + 0 NA Intergenic AluSp|SINE|Alu 44550 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 0.988 1.196 0.644 0.202 0.291 0.121 0.144 0.299 0.238 0.391 0.069 0.205 0.042 0.029 0.306 0.166 0.093 0.242 0.494 0.406 10.786 9.958 0.196 0.206 0.782 0.944 nan 0.360 nan 0.512 0.106 0.114 2.346 2.036 0.570 1.032 0.386 0.278 0.011 0.101 0.542 0.014 0.144 0.069 0.018 0.046 0.166 885 chr15 67368686 67419389 + 0 NA intron (NM_005902, intron 1 of 8) intron (NM_005902, intron 1 of 8) -24017 NM_001145102 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 0.989 0.961 nan 0.182 0.310 0.177 0.392 2.298 0.251 0.118 0.100 0.238 0.395 0.045 0.074 0.268 0.175 1.193 3.638 0.307 0.323 nan 0.194 0.300 0.299 0.336 0.596 0.777 0.768 0.420 0.232 0.430 0.520 0.466 0.919 0.159 0.216 0.396 0.378 0.018 0.108 0.101 0.087 0.392 0.238 0.174 0.075 0.396 0.075 1238 chr18 77152333 77166742 + 0 NA promoter-TSS (NM_001278675) promoter-TSS (NM_001278675) -737 NM_172389 4772 Hs.534074 NM_006162 ENSG00000131196 NFATC1 NF-ATC|NF-ATc1.2|NFAT2|NFATc nuclear factor of activated T-cells 1 protein-coding nan nan 0.728 0.116 1.916 1.035 1.953 0.037 0.033 0.556 0.229 2.039 3.605 0.526 0.046 5.390 7.115 7.088 8.588 2.853 nan 4.482 3.210 1.215 1.273 0.145 0.148 0.265 nan 0.349 0.224 2.385 4.259 0.545 0.696 0.103 0.111 0.310 0.343 2.064 0.062 0.046 0.850 1.953 2.039 0.180 0.141 2.242 0.017 1210 chr18 54302582 54307089 + 0 NA intron (NR_024546, intron 1 of 8) intron (NR_024546, intron 1 of 8) 1085 NR_024546 9352 Hs.114412 NM_004786 ENSG00000091164 TXNL1 HEL-S-114|TRP32|TXL-1|TXNL|Txl thioredoxin like 1 protein-coding nan 2.992 4.390 4.694 3.662 2.120 5.137 1.855 0.102 1.503 0.607 4.428 6.987 2.677 0.125 5.363 5.440 6.260 9.430 9.457 8.747 12.112 6.222 20.706 22.206 2.779 3.522 6.512 9.754 6.643 6.203 3.403 6.431 6.462 7.995 6.021 4.765 nan 3.704 1.660 1.895 1.285 2.134 5.137 4.428 1.030 2.442 2.168 1.920 1016 chr17 7779526 7798290 + 0 NA promoter-TSS (NM_001330111) promoter-TSS (NM_001330111) -202 NM_001330111 84316 Hs.565094 NM_032356 ENSG00000183011 NAA38 LSMD1|PFAAP2 N(alpha)-acetyltransferase 38, NatC auxiliary subunit protein-coding 3.121 1.704 3.326 2.109 4.170 2.109 3.162 1.543 0.239 1.993 1.030 5.866 6.728 1.819 0.099 5.069 6.777 2.919 4.698 9.188 8.564 2.890 1.046 2.676 2.663 2.091 2.936 6.947 6.639 3.102 2.883 1.825 3.608 2.179 2.002 3.082 5.696 2.033 0.889 4.944 3.226 1.039 1.247 3.162 5.866 1.630 3.946 2.901 2.275 1909 chr4 94748555 94758308 + 0 NA Intergenic Intergenic 3353 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 0.343 0.466 0.366 0.268 0.329 0.149 0.273 0.062 0.042 0.115 0.065 0.012 0.758 0.034 0.054 0.495 0.608 0.323 0.588 0.419 0.327 0.121 0.019 0.308 0.392 0.121 0.190 0.343 0.345 0.373 0.216 0.137 0.230 0.085 0.156 0.083 0.155 0.138 0.202 0.247 0.074 0.044 7.349 0.273 0.012 0.020 0.052 0.022 0.025 2086 chr6 20400316 20410256 + 0 NA intron (NM_001243076, intron 1 of 6) intron (NM_001243076, intron 1 of 6) 1376 NM_001243076 1871 Hs.269408 NM_001949 ENSG00000112242 E2F3 E2F-3 E2F transcription factor 3 protein-coding 6.320 2.433 nan 4.042 4.215 2.421 4.258 2.888 0.342 2.090 0.715 6.982 nan 3.125 0.094 6.311 4.846 5.783 nan 7.340 4.295 nan 2.385 11.982 12.573 4.945 6.598 5.766 8.882 5.870 7.170 2.065 3.922 5.873 5.099 9.785 7.965 2.222 1.531 2.904 3.083 1.168 2.562 4.258 6.982 1.299 2.199 1.304 3.793 1079 chr17 42287532 42300456 + 0 NA exon (NM_001076684, exon 3 of 20) exon (NM_001076684, exon 3 of 20) 3047 NM_001076684 7343 Hs.89781 NM_014233 ENSG00000108312 UBTF NOR-90|UBF|UBF-1|UBF1|UBF2 upstream binding transcription factor, RNA polymerase I protein-coding 5.149 3.767 nan 4.329 5.423 2.708 4.380 1.809 0.362 3.035 1.598 4.927 7.488 3.051 0.099 4.779 5.538 2.971 4.409 7.234 nan 4.607 1.486 7.156 7.291 2.025 2.823 6.165 nan 6.057 7.501 3.333 6.341 3.862 3.099 4.533 5.899 1.927 1.052 3.565 4.259 1.509 3.298 4.380 4.927 1.166 3.617 2.354 2.694 788 chr14 50358515 50363332 + 0 NA exon (NM_001663, exon 2 of 2) exon (NM_001663, exon 2 of 2) 1187 NM_001663 382 Hs.525330 NM_001663 ENSG00000165527 ARF6 - ADP ribosylation factor 6 protein-coding 9.724 4.826 6.486 7.390 5.752 3.437 6.106 4.005 0.605 2.549 1.172 6.193 12.814 4.377 0.281 5.507 4.563 8.307 11.563 10.075 9.413 7.924 4.231 13.981 13.867 4.059 5.112 8.314 12.513 14.029 14.591 4.707 8.085 8.192 8.500 5.381 6.364 nan 2.411 6.769 6.290 2.396 4.420 6.106 6.193 2.075 2.932 2.011 2.162 813 chr14 73523888 73527374 + 0 NA intron (NM_021239, intron 1 of 18) CpG 410 NM_021239 58517 Hs.531106 NM_021239 ENSG00000119707 RBM25 NET52|RED120|RNPC7|S164|Snu71|fSAP94 RNA binding motif protein 25 protein-coding 10.192 3.465 5.700 8.296 5.674 2.897 7.410 4.860 0.547 2.248 0.656 6.021 10.685 5.459 0.222 8.798 6.628 8.391 10.846 10.356 9.169 6.750 4.151 26.963 28.256 5.200 6.693 10.468 nan 15.388 16.244 6.009 8.965 6.486 7.200 17.254 12.989 8.381 nan 4.813 3.758 0.984 4.252 7.410 6.021 1.496 1.585 2.586 4.092 873 chr15 63367686 63373290 + 0 NA Intergenic Intergenic 29852 NM_001018008 7168 Hs.133892 NM_000366 ENSG00000140416 TPM1 C15orf13|CMD1Y|CMH3|HEL-S-265|HTM-alpha|LVNC9|TMSA tropomyosin 1 (alpha) protein-coding 1.095 1.206 nan 0.034 0.284 0.199 0.412 1.071 0.057 0.140 0.111 0.084 0.491 0.014 0.065 0.490 0.305 8.484 1.467 0.347 0.322 nan 0.195 1.011 1.085 0.395 0.913 0.189 0.317 0.804 0.583 0.552 1.097 0.183 0.202 0.525 1.540 0.348 0.312 0.065 0.095 0.051 0.056 0.412 0.084 0.191 0.339 0.248 0.218 663 chr12 110455167 110463852 + 0 NA intron (NM_033121, intron 6 of 14) AluSx1|SINE|Alu 22274 NM_033121 88455 Hs.528703 NM_033121 ENSG00000076513 ANKRD13A ANKRD13|NY-REN-25 ankyrin repeat domain 13A protein-coding nan nan 4.037 0.264 0.357 0.091 0.206 0.328 0.149 0.372 0.207 0.215 0.295 0.025 0.135 0.880 0.960 0.383 0.653 nan nan nan 0.230 0.416 0.398 2.218 3.026 nan nan 7.087 8.317 0.312 0.459 1.384 2.426 4.119 8.754 nan 1.188 0.064 0.161 0.264 0.439 0.206 0.215 1.495 0.094 0.103 3.790 1693 chr21 45431080 45449932 + 0 NA intron (NM_003274, intron 1 of 22) AluJo|SINE|Alu 8300 NM_003274 7109 Hs.126221 NM_003274 ENSG00000160218 TRAPPC10 EHOC-1|EHOC1|GT334|TMEM1|TRS130|TRS30 trafficking protein particle complex 10 protein-coding nan 1.517 3.028 0.822 1.003 0.501 0.758 0.440 0.137 0.325 0.234 1.186 2.453 0.512 0.078 1.456 1.646 1.564 2.110 1.990 1.781 nan 0.442 1.924 1.741 1.085 nan 1.776 2.418 2.858 2.752 0.905 1.616 1.431 1.460 1.854 4.779 1.391 0.873 0.805 0.864 0.419 1.091 0.758 1.186 0.323 0.538 0.191 2.987 104 chr1 43242742 43287178 + 0 NA Intergenic Intergenic 11299 NM_001242750 100129924 Hs.720780 NM_001242750 ENSG00000274386 TMEM269 - transmembrane protein 269 protein-coding nan 1.062 nan 0.439 0.513 0.257 0.318 0.437 0.087 0.341 0.246 0.679 1.173 0.326 0.102 0.631 0.624 0.537 0.726 1.456 1.523 0.636 0.284 1.093 1.079 0.720 nan nan 1.144 1.621 1.315 0.726 nan 0.219 0.262 1.186 4.037 0.723 0.523 0.372 0.289 0.043 0.205 0.318 0.679 0.114 0.146 0.277 1.816 1244 chr19 1394613 1417065 + 0 NA Intergenic AluJr|SINE|Alu -1729 NM_018959 26528 Hs.222510 NM_018959 ENSG00000071626 DAZAP1 - DAZ associated protein 1 protein-coding 1.510 1.763 2.957 1.163 1.379 0.689 1.593 0.577 0.096 0.905 0.374 2.105 4.179 1.023 0.077 1.662 1.905 1.952 3.252 2.198 2.260 1.250 0.414 2.836 2.658 1.640 2.223 1.183 nan 2.209 2.147 1.633 2.560 1.332 1.565 1.194 1.375 1.329 0.685 0.774 1.740 0.429 0.489 1.593 2.105 0.468 0.943 0.967 0.595 2436 chr8 141466130 141478177 + 0 NA Intergenic Intergenic -3475 NM_031466 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 4.292 3.014 nan 4.212 5.245 2.731 1.996 1.012 0.281 1.190 0.373 4.640 8.058 1.135 0.094 2.907 3.186 2.233 3.689 nan 7.770 nan 3.794 6.434 6.876 2.128 2.811 4.858 6.896 4.051 4.037 1.856 2.841 4.404 4.628 2.054 2.606 3.454 1.695 4.353 4.164 0.725 1.030 1.996 4.640 1.224 3.483 1.035 0.719 661 chr12 108953375 108964661 + 0 NA intron (NM_213595, intron 2 of 4) intron (NM_213595, intron 2 of 4) 3779 NM_001301140 23479 Hs.615131 NM_014301 ENSG00000136003 ISCU 2310020H20Rik|HML|ISU2|NIFU|NIFUN|hnifU iron-sulfur cluster assembly enzyme protein-coding 3.200 2.336 nan 2.840 2.906 1.551 1.973 2.288 0.170 1.735 0.906 2.417 5.978 2.975 0.144 3.868 3.085 3.727 6.091 5.168 5.334 5.398 3.410 7.823 8.294 2.870 3.810 6.815 8.147 5.099 4.445 3.168 4.175 4.136 6.534 3.992 3.283 4.037 2.113 2.808 4.096 0.628 1.151 1.973 2.417 1.091 2.383 0.982 0.961 209 chr1 156425113 156428530 + 0 NA Intergenic CpG -27481 NR_135263 10485 Hs.380027 NM_006365 ENSG00000125462 C1orf61 CROC4 chromosome 1 open reading frame 61 protein-coding nan nan 7.230 4.653 4.993 2.488 4.280 3.392 0.851 3.699 1.927 3.329 27.757 4.486 0.215 6.109 6.270 5.963 8.721 8.525 nan 8.371 4.238 8.028 8.362 4.626 5.181 11.686 16.376 4.586 5.213 3.404 6.346 6.362 5.449 3.921 6.722 3.221 2.020 3.842 7.759 1.109 1.369 4.280 3.329 1.760 4.509 4.295 2.149 2142 chr6 45665921 45684717 + 0 NA Intergenic L2a|LINE|L2 230015 NR_045672 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 1.221 0.815 0.758 0.074 0.332 0.176 0.285 0.881 0.095 0.075 0.091 0.168 0.396 0.069 0.102 0.722 0.614 2.485 7.367 0.317 0.359 0.120 0.094 0.616 0.733 0.127 0.227 0.385 nan 0.477 0.210 0.776 1.224 0.082 0.067 0.424 0.808 0.567 0.652 0.083 0.132 0.021 0.038 0.285 0.168 0.010 0.071 0.603 0.285 1646 chr20 60775474 60803472 + 0 NA TTS (NM_007232) TTS (NM_007232) 5850 NM_007232 11255 Hs.251399 NM_007232 ENSG00000101180 HRH3 GPCR97|HH3R histamine receptor H3 protein-coding 0.877 1.093 0.627 0.571 2.154 1.163 1.012 0.072 0.098 1.089 0.739 0.738 5.631 0.082 0.071 1.550 nan 0.107 0.179 1.135 1.098 2.212 0.716 0.476 0.594 0.395 0.645 2.242 1.959 0.497 0.376 0.606 0.761 0.248 0.268 0.477 0.599 2.378 1.234 0.627 2.016 0.051 0.110 1.012 0.738 0.236 1.353 0.197 0.092 772 chr14 33738423 33780918 + 0 NA intron (NM_173159, intron 3 of 11) intron (NM_173159, intron 3 of 11) 351211 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 1.539 0.738 0.918 0.154 0.241 0.126 0.236 0.236 0.121 0.111 0.119 0.281 0.331 1.898 0.116 0.214 0.153 0.261 0.917 0.353 0.366 0.131 0.077 0.235 0.203 0.166 0.298 0.329 0.386 0.619 0.266 0.157 0.288 0.101 0.113 0.226 0.457 0.442 0.563 0.036 0.134 0.015 0.124 0.236 0.281 0.050 0.150 0.063 0.088 2447 chr8 144588619 144613016 + 0 NA intron (NM_015117, intron 3 of 11) intron (NM_015117, intron 3 of 11) 22803 NM_015117 23144 Hs.521915 NM_015117 ENSG00000014164 ZC3H3 ZC3HDC3 zinc finger CCCH-type containing 3 protein-coding 1.428 0.506 nan 1.410 1.044 0.638 0.592 0.167 0.059 0.828 0.363 1.815 1.688 0.120 0.075 0.651 0.975 0.280 0.419 nan 3.562 nan 0.303 0.728 0.788 0.423 0.637 1.641 1.699 0.917 1.223 0.602 0.786 0.492 0.534 0.251 0.396 1.716 1.041 4.364 0.485 0.070 0.076 0.592 1.815 0.321 0.971 0.158 0.071 1430 chr2 43445264 43455678 + 0 NA 3' UTR (NM_006887, exon 2 of 2) 3' UTR (NM_006887, exon 2 of 2) 3274 NM_006887 678 Hs.503093 NM_006887 ENSG00000152518 ZFP36L2 BRF2|ERF-2|ERF2|RNF162C|TIS11D ZFP36 ring finger protein like 2 protein-coding 5.549 nan 7.088 3.180 2.326 1.156 2.559 4.003 0.278 2.029 0.654 2.954 4.308 5.531 0.190 2.507 2.651 4.648 8.234 nan 2.652 4.342 1.705 5.770 5.694 2.942 4.072 5.456 8.479 5.196 5.889 1.966 3.309 1.946 1.691 5.635 5.979 nan 1.257 2.080 2.499 0.720 1.866 2.559 2.954 1.523 3.036 1.993 2.783 1806 chr3 129308852 129327785 + 0 NA intron (NM_015103, intron 1 of 35) intron (NM_015103, intron 1 of 35) 7264 NM_015103 23129 Hs.301685 NM_015103 ENSG00000004399 PLXND1 PLEXD1 plexin D1 protein-coding 1.945 nan 1.335 1.609 1.032 0.438 1.555 2.023 0.442 0.696 0.757 1.760 1.944 1.281 0.085 0.467 0.516 0.631 0.865 1.890 1.794 2.268 0.681 0.603 0.560 0.792 nan 6.684 6.566 1.115 0.839 0.439 0.584 0.664 0.681 1.188 2.247 1.352 0.825 1.069 0.540 0.201 0.390 1.555 1.760 0.846 2.789 0.182 0.503 1807 chr3 133074719 133083262 + 0 NA intron (NM_001282865, intron 2 of 3) L1ME1|LINE|L1 -39849 NM_003571 8419 Hs.659862 NM_003571 ENSG00000170819 BFSP2 CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN beaded filament structural protein 2 protein-coding 1.061 nan nan 0.174 0.644 0.262 0.241 0.374 0.188 0.351 0.285 0.144 0.277 0.013 0.093 1.214 0.961 8.137 1.603 0.472 0.647 1.782 0.590 0.706 0.876 0.423 0.761 0.258 0.321 nan 1.522 0.192 0.311 0.141 0.166 0.709 2.524 0.717 0.585 0.051 0.197 0.023 0.074 0.241 0.144 0.067 0.024 0.034 0.876 2560 chr9 135142234 135148411 + 0 NA intron (NM_015046, intron 24 of 25) intron (NM_015046, intron 24 of 25) 85050 NM_015046 23064 Hs.460317 NM_015046 ENSG00000107290 SETX ALS4|AOA2|SCAR1|bA479K20.2 senataxin protein-coding nan 1.145 1.193 0.617 0.454 0.363 0.645 0.283 0.103 0.231 0.325 0.345 0.776 0.246 0.103 0.413 0.239 0.934 1.804 0.967 0.919 nan 0.248 1.600 1.591 0.594 0.820 2.271 2.737 1.155 0.720 0.223 0.204 1.317 9.326 0.523 0.947 0.942 0.411 0.449 0.088 0.062 0.063 0.645 0.345 0.330 0.870 0.032 0.179 53 chr1 23666150 23672421 + 0 NA intron (NM_005826, intron 1 of 10) intron (NM_005826, intron 1 of 10) 1572 NM_001297622 10236 Hs.373763 NM_005826 ENSG00000125944 HNRNPR HNRPR|hnRNP-R heterogeneous nuclear ribonucleoprotein R protein-coding 7.113 3.796 nan 8.580 5.857 2.989 5.055 2.402 0.205 3.422 1.480 2.790 10.001 5.280 0.190 6.497 5.691 6.248 8.253 13.423 12.937 4.661 2.936 14.823 14.902 8.862 10.238 8.301 13.661 8.706 9.475 5.746 9.253 3.945 4.430 11.165 8.850 3.463 1.874 6.524 4.134 0.956 3.711 5.055 2.790 1.629 1.892 2.490 3.213 1866 chr3 184078553 184090307 + 0 NA intron (NM_001278715, intron 3 of 3) intron (NM_001278715, intron 3 of 3) 3659 NM_001278715 5437 Hs.432574 NM_006232 ENSG00000163882 POLR2H RPABC3|RPB17|RPB8 RNA polymerase II subunit H protein-coding 4.030 3.433 2.242 2.574 4.613 2.407 1.534 1.823 0.373 2.355 1.314 1.877 8.760 1.769 0.110 2.062 2.605 2.630 3.669 4.066 3.363 6.632 3.026 3.921 4.056 2.536 3.468 4.276 5.695 4.107 4.719 1.161 2.521 2.599 2.533 3.043 3.807 1.865 1.032 1.695 1.861 0.623 2.050 1.534 1.877 0.719 1.594 0.913 1.797 1136 chr17 78690175 78768095 + 0 NA intron (NM_001163034, intron 6 of 29) FLAM_C|SINE|Alu 50297 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 1.223 1.122 1.235 1.185 0.983 0.485 1.628 0.656 0.143 0.474 0.374 1.274 2.160 0.104 0.114 0.650 0.867 0.358 0.607 2.785 2.356 1.465 0.413 0.545 0.558 nan 1.869 3.775 3.725 0.874 0.622 0.699 1.066 1.232 1.476 0.483 0.878 nan 0.817 0.801 2.785 0.230 0.260 1.628 1.274 0.262 2.100 0.739 0.176 84 chr1 36019127 36024630 + 0 NA intron (NM_024874, intron 1 of 20) intron (NM_024874, intron 1 of 20) 1159 NM_024874 79932 Hs.456507 NM_024874 ENSG00000142687 KIAA0319L AAVR KIAA0319 like protein-coding 4.233 nan 5.882 4.037 2.555 1.284 3.051 2.654 0.233 2.344 1.308 7.505 7.339 3.111 0.081 2.610 3.047 3.151 4.465 5.959 5.026 nan 1.905 5.768 5.937 3.417 5.325 7.526 10.176 nan 5.584 3.066 4.651 2.511 3.636 3.598 4.737 2.501 nan 3.107 2.005 0.815 1.536 3.051 7.505 1.206 1.973 1.272 1.506 107 chr1 43902045 43908565 + 0 NA exon (NM_015284, exon 49 of 71) exon (NM_015284, exon 49 of 71) -8905 NR_106793 102465440 NR_106793 ENSG00000274975 MIR6735 hsa-mir-6735 microRNA 6735 ncRNA nan 0.569 nan 1.540 1.776 0.938 0.221 0.127 0.111 1.593 0.399 1.746 0.972 0.131 0.126 0.453 0.555 0.325 0.860 5.932 5.117 0.254 0.101 0.271 0.292 0.379 nan 15.115 11.473 0.453 0.417 0.937 nan 0.052 0.085 0.369 1.256 2.213 1.251 1.207 2.632 0.057 0.212 0.221 1.746 0.136 1.404 0.227 0.378 913 chr16 632299 647735 + 0 NA promoter-TSS (NM_001172665) promoter-TSS (NM_001172665) -60 NM_001172665 57799 Hs.459630 NM_021168 ENSG00000197562 RAB40C RARL|RASL8C RAB40C, member RAS oncogene family protein-coding 2.750 nan 3.519 3.569 2.197 1.185 1.558 0.833 0.177 1.512 0.568 2.321 6.514 1.136 0.073 2.411 3.030 1.091 1.692 2.455 2.406 nan 1.673 4.505 4.399 1.114 nan 4.371 6.752 2.093 2.344 1.373 2.227 3.154 3.021 1.183 1.607 3.440 1.717 4.691 6.562 0.611 0.488 1.558 2.321 1.190 1.394 1.217 0.649 266 chr1 202916998 202938988 + 0 NA promoter-TSS (NM_001290629) promoter-TSS (NM_001290629) -293 NM_001290629 51094 Hs.5298 NM_015999 ENSG00000159346 ADIPOR1 ACDCR1|CGI-45|CGI45|PAQR1|TESBP1A adiponectin receptor 1 protein-coding 2.483 3.089 2.721 1.990 2.673 1.504 1.678 0.696 0.110 1.120 0.619 2.934 4.311 0.517 0.096 2.352 2.839 2.131 3.286 4.928 4.601 3.830 2.222 nan nan 1.294 1.698 2.935 4.195 1.098 0.802 0.607 0.993 1.665 1.714 2.408 5.717 1.963 0.927 0.777 3.260 0.295 0.885 1.678 2.934 0.212 0.756 0.248 3.370 227 chr1 163939560 163954143 + 0 NA Intergenic L2|LINE|L2 -553870 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 0.899 nan 1.186 3.147 1.377 0.560 0.369 0.112 0.066 0.573 0.238 1.424 1.195 0.059 0.084 0.914 0.601 3.690 1.083 0.577 nan 5.303 1.831 0.226 0.200 0.584 0.806 2.319 nan 0.470 0.204 0.525 0.608 1.114 2.157 0.420 1.045 2.182 1.056 0.123 0.347 0.254 0.870 0.369 1.424 0.026 0.487 0.105 0.132 789 chr14 53017567 53022091 + 0 NA promoter-TSS (NM_001160047) promoter-TSS (NM_001160047) -37 NM_001099652 283554 Hs.416214 NM_001099652 ENSG00000180998 GPR137C TM7SF1L2 G protein-coupled receptor 137C protein-coding nan 5.156 4.039 5.090 4.028 2.091 5.320 1.810 0.319 1.607 1.354 5.820 16.381 1.438 0.105 4.344 5.881 6.287 8.053 12.355 7.649 8.059 4.698 11.109 11.620 3.844 4.308 3.595 9.224 7.608 8.484 2.261 4.729 7.829 7.047 2.887 2.943 nan 2.156 8.041 7.718 1.597 5.402 5.320 5.820 1.265 1.932 1.394 1.096 420 chr11 18081403 18095710 + 0 NA Intergenic Arthur1A|DNA|hAT-Tip100 -26221 NM_004179 7166 Hs.591999 NM_004179 ENSG00000129167 TPH1 TPRH|TRPH tryptophan hydroxylase 1 protein-coding 1.227 nan 2.872 3.596 1.226 0.506 0.135 0.100 0.067 2.139 0.750 0.536 0.987 0.030 0.110 nan 0.383 0.282 0.309 0.975 1.051 4.565 1.799 0.263 0.267 0.443 nan 2.345 3.575 1.945 1.777 0.216 0.335 7.997 9.203 1.393 5.056 5.130 nan 0.436 1.098 2.480 0.033 0.135 0.536 2.747 0.076 1.560 485 chr11 72469039 72505942 + 0 NA intron (NM_006645, intron 2 of 6) MIR3|SINE|MIR -7085 NR_039841 100616410 NR_039841 ENSG00000265064 MIR4692 - microRNA 4692 ncRNA nan 1.698 1.417 2.321 2.001 1.001 0.405 0.258 0.117 0.512 0.201 1.684 2.906 0.329 0.116 1.106 1.660 0.625 0.956 1.873 1.847 3.585 1.591 2.673 2.760 0.801 1.215 5.372 5.678 0.972 0.901 1.146 1.719 1.938 1.936 0.567 1.415 1.395 0.865 2.279 2.584 0.522 0.517 0.405 1.684 0.276 0.924 0.628 0.305 1171 chr18 34970776 34985376 + 0 NA intron (NM_001025087, intron 2 of 12) intron (NM_001025087, intron 2 of 12) 68391 NR_132967 106635546 NR_132967 SNORA111 - small nucleolar RNA, H/ACA box 111 snoRNA nan 0.983 0.808 0.646 0.598 0.308 1.016 0.061 0.493 0.357 0.726 1.024 0.059 0.048 1.172 2.344 0.185 0.458 1.369 1.304 2.462 1.172 0.139 0.148 1.296 1.667 nan 1.904 2.479 2.918 0.244 0.371 2.160 1.614 1.017 0.895 3.483 2.383 1.922 0.328 0.444 0.390 1.016 0.726 0.485 0.093 0.054 0.239 1475 chr2 122405458 122409406 + 0 NA promoter-TSS (NM_001207051) promoter-TSS (NM_001207051) -133 NR_037856 254128 Hs.712685 NR_037856 ENSG00000236859 NIFK-AS1 - NIFK antisense RNA 1 ncRNA 6.719 nan nan 6.996 6.060 3.291 4.307 3.502 0.573 2.490 1.828 5.332 13.808 3.921 0.124 6.335 7.848 7.513 9.204 8.232 6.713 11.301 4.546 21.710 24.502 5.816 7.252 8.991 14.460 12.256 11.527 3.685 7.768 3.949 3.679 9.362 11.110 2.977 1.570 4.125 3.696 1.030 4.213 4.307 5.332 1.937 4.297 4.147 4.039 1689 chr21 43428758 43443118 + 0 NA intron (NR_119384, intron 1 of 1) intron (NR_119384, intron 1 of 1) -5442 NM_001320729 49854 Hs.434947 NM_020727 ENSG00000173276 ZBTB21 ZNF295 zinc finger and BTB domain containing 21 protein-coding nan 2.501 6.870 2.078 1.749 0.837 1.900 0.918 0.134 1.079 0.561 2.498 10.428 0.680 0.085 2.992 4.408 1.838 3.075 2.999 2.646 nan 1.559 4.224 4.335 1.779 nan 3.555 5.544 2.740 3.565 1.960 3.301 4.140 4.300 2.225 2.371 2.667 1.790 2.860 4.376 1.124 0.858 1.900 2.498 0.964 1.176 1.263 0.825 259 chr1 184019360 184034444 + 0 NA intron (NM_001127394, intron 3 of 3) intron (NM_001127394, intron 3 of 3) 6117 NM_052965 116461 Hs.548197 NM_052965 ENSG00000198860 TSEN15 C1orf19|PCH2F|sen15 tRNA splicing endonuclease subunit 15 protein-coding nan nan 2.403 1.332 0.877 0.384 0.953 3.013 0.267 0.880 0.423 0.873 1.853 6.286 0.191 1.842 2.062 2.453 3.287 2.395 nan 1.332 0.464 nan 3.778 2.645 3.072 1.915 1.762 1.536 1.378 2.089 3.341 1.526 1.305 1.551 nan 1.066 0.675 0.772 0.842 0.341 0.611 0.953 0.873 0.303 0.444 0.676 0.695 1092 chr17 48905044 48919555 + 0 NA promoter-TSS (NM_175575) promoter-TSS (NM_175575) 288 NM_001330341 124857 Hs.211475 NM_175575 ENSG00000173714 WFIKKN2 GASP-1|WFDC20B|WFIKKNRP|hGASP-1 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 protein-coding 2.711 0.991 nan 0.141 0.420 0.252 0.546 0.128 0.066 0.125 0.170 0.145 0.387 0.149 0.107 0.602 0.633 0.278 0.392 0.768 nan 1.281 0.367 0.858 1.015 1.950 2.459 0.456 nan 1.578 1.533 0.394 0.462 0.369 0.366 2.298 7.602 0.627 0.534 0.082 0.103 0.040 1.319 0.546 0.145 0.387 0.325 0.061 2.808 83 chr1 35653504 35663986 + 0 NA promoter-TSS (NR_136703) promoter-TSS (NR_136703) 1 NR_136702 6421 Hs.355934 NM_005066 ENSG00000116560 SFPQ POMP100|PPP1R140|PSF splicing factor proline and glutamine rich protein-coding 4.018 nan 3.688 4.546 3.466 1.936 2.780 1.768 0.387 3.052 1.388 7.030 4.764 3.011 0.179 3.519 3.394 3.954 5.652 7.818 7.752 nan 2.121 7.657 7.802 2.980 3.795 10.219 14.214 nan 5.809 3.535 6.768 3.041 2.964 5.668 4.143 1.778 nan 2.681 2.852 0.457 1.945 2.780 7.030 0.916 1.316 0.913 1.143 1843 chr3 176346312 176353346 + 0 NA intron (NR_109968, intron 2 of 2) L2|LINE|L2 3491 NR_109968 100505547 Hs.253350 NR_109968 ENSG00000223715 LINC01208 - long intergenic non-protein coding RNA 1208 ncRNA 1.015 1.158 0.726 0.112 0.448 0.291 0.083 0.164 0.159 0.120 0.180 0.102 0.266 0.077 0.145 3.318 3.785 11.762 3.038 0.322 0.396 2.195 0.882 2.592 2.564 0.563 0.873 0.341 0.363 0.616 0.251 5.452 8.552 0.065 0.178 0.353 0.587 0.217 0.187 0.054 0.089 0.027 0.056 0.083 0.102 0.029 0.073 8.760 0.088 2276 chr7 73645896 73651006 + 0 NA intron (NM_181471, intron 10 of 10) L1ME1|LINE|L1 20337 NM_181471 5982 Hs.647062 NM_002914 ENSG00000049541 RFC2 RFC40 replication factor C subunit 2 protein-coding nan 0.519 0.687 0.136 0.297 0.117 0.118 0.300 0.221 0.122 0.163 0.070 0.280 0.168 0.210 0.547 0.624 8.633 6.173 0.283 0.511 0.496 0.224 0.263 0.187 0.220 nan 0.292 nan 0.318 0.162 0.447 0.501 0.121 0.178 0.202 0.341 0.539 0.310 0.110 0.191 0.019 0.142 0.118 0.070 0.040 0.231 0.096 2118 chr6 37273001 37295034 + 0 NA intron (NM_017772, intron 10 of 12) L3|LINE|CR1 -37731 NR_046399 9025 Hs.485278 NM_003958 ENSG00000112130 RNF8 hRNF8 ring finger protein 8 protein-coding nan 1.260 nan 0.334 0.434 0.218 0.679 0.263 0.095 0.428 0.243 1.489 0.954 0.074 0.111 0.479 0.605 0.377 nan nan 1.178 1.059 0.440 0.441 0.580 3.440 3.784 1.542 2.454 0.937 0.910 0.261 0.373 0.647 0.675 0.614 1.587 1.121 0.678 0.617 0.286 0.191 0.179 0.679 1.489 0.408 0.237 0.032 0.395 67 chr1 28572742 28588682 + 0 NA Intergenic AluSz|SINE|Alu -5251 NM_031459 83667 Hs.469543 NM_031459 ENSG00000130766 SESN2 HI95|SES2|SEST2 sestrin 2 protein-coding 2.011 1.327 nan 2.110 1.401 0.926 0.487 1.144 0.231 0.640 0.290 0.466 2.862 2.550 0.162 0.709 0.940 1.236 2.090 1.640 1.569 1.871 0.373 2.951 2.998 1.439 2.103 2.477 3.089 1.577 1.461 0.750 1.422 1.124 1.345 1.705 5.694 1.146 0.621 0.759 1.021 0.197 1.206 0.487 0.466 0.353 0.651 0.417 0.388 1310 chr19 39880324 39883111 + 0 NA promoter-TSS (NM_001317770) promoter-TSS (NM_001317770) 118 NR_046384 54623 Hs.466714 NM_019088 ENSG00000006712 PAF1 F23149_1|PD2 PAF1 homolog, Paf1/RNA polymerase II complex component protein-coding 6.837 5.085 5.638 11.808 7.990 3.790 4.661 2.578 0.676 2.912 1.251 6.088 24.552 3.848 0.235 5.894 6.452 7.633 10.725 12.731 11.315 12.993 8.673 20.491 22.451 5.994 6.857 8.886 12.771 10.202 10.900 6.943 10.029 8.130 7.827 6.624 8.548 5.198 2.582 4.784 6.579 1.806 2.677 4.661 6.088 2.495 4.639 2.684 2.439 2087 chr6 20431824 20448819 + 0 NA intron (NM_001243076, intron 1 of 6) intron (NM_001243076, intron 1 of 6) 36411 NM_001243076 1871 Hs.269408 NM_001949 ENSG00000112242 E2F3 E2F-3 E2F transcription factor 3 protein-coding 1.608 0.880 nan 0.386 0.454 0.245 0.264 0.343 0.156 0.378 0.222 0.400 nan 0.103 0.113 0.442 0.339 0.490 nan 0.486 0.714 nan 0.205 0.609 0.616 3.349 4.574 1.107 1.098 0.625 0.452 0.186 0.405 0.939 1.360 0.734 1.319 0.953 0.783 0.072 0.116 0.174 0.158 0.264 0.400 0.519 0.364 0.076 0.392 516 chr11 111241658 111277757 + 0 NA Intergenic Intergenic -9550 NM_006235 5450 Hs.654525 NM_006235 ENSG00000110777 POU2AF1 BOB1|OBF-1|OBF1|OCAB POU class 2 associating factor 1 protein-coding 0.737 1.174 0.857 0.265 2.662 1.462 0.206 0.112 0.041 0.186 0.207 0.729 1.335 0.043 0.108 2.129 nan 1.498 3.328 0.584 0.774 0.769 0.250 0.335 0.317 2.484 nan 0.722 0.523 0.437 0.243 0.947 1.574 0.855 1.028 0.192 0.419 0.857 0.512 1.434 0.136 0.249 0.157 0.206 0.729 0.531 0.222 0.896 0.051 2210 chr7 1326483 1331996 + 0 NA Intergenic Intergenic 56585 NM_001080461 340260 Hs.232272 NM_001080461 ENSG00000164853 UNCX UNCX4.1 UNC homeobox protein-coding 3.704 0.707 10.823 0.176 0.490 0.145 0.444 0.069 0.133 0.132 0.348 nan 0.746 0.125 0.214 0.243 0.096 nan 1.218 0.753 nan 0.101 0.476 0.439 0.285 0.410 nan 0.230 1.214 0.958 0.246 0.334 0.288 0.369 0.106 0.066 0.702 0.363 0.404 0.045 0.070 0.047 0.444 0.348 3.454 0.186 0.072 0.089 1751 chr3 14987498 14992430 + 0 NA promoter-TSS (NR_046255) promoter-TSS (NR_046255) -16 NR_046251 100505641 Hs.517821 NR_046251 ENSG00000225733 FGD5-AS1 - FGD5 antisense RNA 1 ncRNA nan 4.312 4.412 4.388 3.848 2.045 3.186 3.370 0.588 1.812 1.065 4.296 9.696 4.062 0.120 5.780 4.374 8.002 10.311 8.728 8.495 6.143 3.842 15.125 15.749 2.963 3.380 9.381 14.631 8.697 8.232 6.670 7.610 4.366 5.455 5.176 4.322 2.763 1.195 4.470 3.898 1.388 3.172 3.186 4.296 0.850 3.333 2.292 2.035 1781 chr3 99977952 99994582 + 0 NA intron (NM_001199198, intron 1 of 18) intron (NM_001199198, intron 1 of 18) 6606 NM_018309 55773 Hs.477003 NM_018309 ENSG00000036054 TBC1D23 NS4ATP1 TBC1 domain family member 23 protein-coding 2.257 1.867 1.641 0.823 1.167 0.579 0.474 1.062 0.174 1.225 0.640 1.108 1.125 0.495 0.100 0.910 1.107 1.120 1.676 1.455 1.379 2.880 1.004 1.936 2.223 0.941 1.402 1.094 1.375 2.040 1.888 0.607 1.030 0.631 0.564 5.390 9.744 1.901 1.035 0.334 0.446 0.086 0.331 0.474 1.108 0.251 0.355 0.243 5.551 502 chr11 93469908 93479282 + 0 NA promoter-TSS (NM_001286067) promoter-TSS (NM_001286067) 108 NM_024116 79101 Hs.355750 NM_024116 ENSG00000166012 TAF1D JOSD3|RAFI41|TAF(I)41|TAFI41 TATA-box binding protein associated factor, RNA polymerase I subunit D protein-coding 1.943 nan 1.480 2.608 2.628 1.300 1.774 0.563 0.119 1.445 0.771 2.473 5.222 2.846 0.179 10.239 9.677 3.896 nan 4.936 5.096 5.227 2.752 13.864 14.357 3.596 4.376 5.122 6.801 5.345 5.744 4.746 7.514 3.747 4.401 5.523 nan 2.663 1.420 1.874 2.099 0.632 1.298 1.774 2.473 0.599 1.474 2.250 2.050 2236 chr7 19408165 19422927 + 0 NA Intergenic Intergenic -230502 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding nan 0.977 nan 0.191 0.182 0.044 0.223 0.289 0.131 0.826 0.655 0.073 0.669 0.103 0.150 nan 0.204 0.189 0.263 0.377 0.442 3.741 1.251 0.295 0.269 2.733 3.339 0.604 0.792 1.132 0.855 0.091 0.118 4.827 3.860 0.286 0.621 0.998 0.720 0.015 0.097 1.074 0.016 0.223 0.073 0.302 0.550 0.027 0.058 1179 chr18 42373212 42386249 + 0 NA intron (NM_001130110, intron 2 of 3) LTR33|LTR|ERVL 118867 NM_015559 26040 Hs.435458 NM_015559 ENSG00000152217 SETBP1 MRD29|SEB SET binding protein 1 protein-coding nan 0.970 1.470 0.223 0.385 0.268 0.893 0.226 0.062 0.439 0.222 0.309 0.453 0.025 0.099 0.610 0.662 0.278 0.565 0.770 0.868 3.105 1.599 0.072 0.064 0.673 0.923 0.528 0.558 1.107 0.757 0.183 0.292 3.302 4.192 0.471 nan 2.031 1.633 0.159 0.164 1.052 0.369 0.893 0.309 0.200 0.408 0.196 0.350 1527 chr2 208254232 208278459 + 0 NA Intergenic Intergenic -128271 NM_134442 1385 Hs.516646 NM_004379 ENSG00000118260 CREB1 CREB|CREB-1 cAMP responsive element binding protein 1 protein-coding 1.048 nan 1.159 1.746 2.450 1.294 0.846 0.349 0.098 0.674 0.504 2.111 5.094 0.049 0.081 0.373 0.501 1.225 1.497 0.713 0.830 0.303 0.079 0.424 0.421 4.319 4.326 0.689 0.802 0.793 0.402 0.242 0.414 1.895 2.157 1.185 2.314 0.762 0.397 2.445 0.456 0.678 0.101 0.846 2.111 0.073 0.893 0.135 0.282 2541 chr9 126864412 126876430 + 0 NA Intergenic Intergenic 96532 NM_004789 9355 Hs.696425 NM_004789 ENSG00000106689 LHX2 LH2|hLhx2 LIM homeobox 2 protein-coding nan nan 0.590 1.295 0.326 0.160 0.169 0.087 0.013 0.166 0.090 0.479 nan 0.027 0.058 0.212 0.316 0.082 0.129 1.149 1.118 0.613 0.196 0.178 0.216 0.284 nan 7.294 5.342 1.143 0.800 0.151 0.212 0.158 0.205 0.269 0.291 nan 0.898 0.955 0.140 0.040 0.040 0.169 0.479 0.227 1.037 0.033 0.031 251 chr1 182807310 182812469 + 0 NA intron (NR_033302, intron 1 of 28) MIRb|SINE|MIR 1450 NR_033302 1660 Hs.191518 NM_001357 ENSG00000135829 DHX9 DDX9|LKP|NDH2|NDHII|RHA DExH-box helicase 9 protein-coding nan 4.388 5.194 3.222 4.685 2.423 3.283 2.275 0.560 3.036 1.575 3.761 7.830 3.462 0.189 7.619 6.685 8.649 12.112 8.724 nan 7.730 3.774 nan 11.602 4.125 5.581 5.831 9.378 6.830 7.078 7.857 12.777 7.625 10.011 7.819 8.419 3.685 2.066 2.646 4.173 1.759 2.697 3.283 3.761 0.716 1.552 3.578 2.591 998 chr16 90084293 90090074 + 0 NA promoter-TSS (NM_001288708) promoter-TSS (NM_001288708) -644 NM_001288709 79007 Hs.301394 NM_024043 ENSG00000003249 DBNDD1 - dysbindin domain containing 1 protein-coding nan nan 3.703 6.366 6.632 3.906 9.805 0.837 0.084 1.383 0.853 8.913 7.517 0.804 0.072 nan 4.564 3.903 5.798 6.060 5.341 6.899 2.034 nan 4.877 2.733 nan 3.101 5.841 nan 4.022 2.455 5.893 4.644 7.434 4.039 4.440 nan 1.850 2.702 3.425 1.928 1.428 9.805 8.913 1.572 4.694 2.327 0.974 1077 chr17 41515612 41536852 + 0 NA Intergenic Intergenic 4058 NR_031751 100313779 NR_031751 ENSG00000267151 MIR2117 - microRNA 2117 ncRNA 1.760 2.761 nan 0.248 0.604 0.279 0.463 0.216 0.157 0.198 0.182 0.120 0.410 0.107 0.095 0.309 0.298 0.202 0.322 0.334 nan 0.276 0.121 0.454 0.483 1.021 1.386 0.217 nan 1.749 1.402 0.269 0.253 2.680 2.713 0.623 2.838 1.006 0.628 0.044 0.235 1.068 0.184 0.463 0.120 0.580 0.086 0.107 0.951 1076 chr17 41462790 41497820 + 0 NA Intergenic Intergenic 3952 NM_001661 379 Hs.183153 NM_001661 ENSG00000175906 ARL4D ARF4L|ARL6 ADP ribosylation factor like GTPase 4D protein-coding 2.803 2.801 nan 2.237 2.761 1.532 1.092 0.975 0.284 1.149 0.637 0.929 3.665 0.989 0.126 2.167 2.492 1.589 2.377 2.533 nan 1.708 0.759 3.648 3.898 1.655 2.266 0.704 nan 3.230 2.593 1.181 1.518 2.356 2.505 2.744 8.404 2.182 1.309 1.287 1.852 0.776 0.725 1.092 0.929 1.156 0.992 0.614 2.460 2372 chr8 61589706 61595439 + 0 NA intron (NM_017780, intron 1 of 37) CpG 1248 NM_017780 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 12.127 2.635 9.378 7.443 6.409 3.551 5.130 0.066 2.940 1.455 10.499 9.424 3.614 0.062 2.890 4.278 2.994 3.783 17.849 13.990 6.758 2.272 2.197 1.944 3.754 nan 5.425 8.392 nan 13.910 1.739 6.915 10.140 10.132 9.317 6.376 4.489 2.607 2.715 5.743 2.912 4.223 5.130 10.499 1.005 6.923 1.605 3.111 2400 chr8 102370643 102376845 + 0 NA Intergenic Intergenic -7377 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACAP1 FKSG17 nascent polypeptide associated complex alpha subunit pseudogene 1 pseudo 1.314 nan 7.804 4.011 4.367 2.073 1.850 0.155 0.154 1.467 0.845 10.899 13.532 0.017 0.056 0.247 0.245 0.477 1.167 9.614 9.969 7.210 2.499 0.394 0.482 0.607 nan 13.124 13.934 nan 0.153 0.472 0.944 6.664 5.874 0.248 nan 4.121 2.182 4.723 4.222 2.471 0.522 1.850 10.899 0.096 3.972 0.068 0.168 1040 chr17 27464604 27477564 + 0 NA intron (NM_001346765, intron 2 of 42) Tigger15a|DNA|TcMar-Tigger -3687 NM_001346768 399687 Hs.462590 NM_078471 ENSG00000196535 MYO18A MAJN|MYSPDZ|SP-R210|SPR210 myosin XVIIIA protein-coding nan nan nan 0.272 1.124 0.494 0.513 0.703 0.162 0.253 0.190 0.724 1.520 0.548 0.195 1.167 1.459 0.591 1.058 1.433 1.718 1.852 0.604 1.341 1.433 0.994 1.372 2.033 2.266 7.133 5.811 1.390 1.621 0.468 0.437 0.816 nan 0.980 0.667 0.797 0.479 0.044 0.262 0.513 0.724 0.639 0.566 0.565 0.587 1615 chr20 43319872 43332425 + 0 NA Intergenic Intergenic -17337 NM_003881 8839 Hs.592145 NM_003881 ENSG00000064205 WISP2 CCN5|CT58|CTGF-L WNT1 inducible signaling pathway protein 2 protein-coding nan nan 0.896 0.580 0.387 0.205 0.303 0.895 0.155 0.100 0.097 0.228 0.541 0.096 0.087 0.696 0.726 0.218 0.350 0.356 0.363 nan 0.230 0.344 0.373 0.664 1.114 0.436 0.598 nan 4.616 0.378 0.548 0.166 0.171 1.853 4.719 0.448 0.404 0.114 0.106 0.102 0.303 0.228 0.140 0.121 0.229 1.633 2269 chr7 64709825 64735406 + 0 NA Intergenic AluSx|SINE|Alu -116097 NM_001287534 168374 Hs.9521 NM_007139 ENSG00000146757 ZNF92 HEL-203|HPF12|HTF12|TF12 zinc finger protein 92 protein-coding nan nan nan 0.493 0.462 0.219 0.254 0.103 0.138 0.413 0.291 0.714 1.307 0.786 0.139 1.332 1.182 0.793 1.181 1.584 1.306 1.437 0.428 0.901 0.912 0.273 0.436 0.692 0.972 0.783 0.605 0.834 1.082 0.515 0.340 1.861 3.788 1.267 0.731 0.913 2.811 0.094 0.378 0.254 0.714 0.619 0.369 0.454 1.461 1878 chr3 193900876 193931437 + 0 NA Intergenic Intergenic 7940 NR_125404 100505920 Hs.436654 NR_125403 ENSG00000225742 LINC02036 - long intergenic non-protein coding RNA 2036 ncRNA nan 1.633 1.231 0.896 1.818 1.076 0.369 0.254 0.112 1.226 0.737 0.689 nan 0.113 0.088 1.037 1.232 1.192 1.110 0.721 0.832 4.329 1.911 0.847 0.845 0.302 0.456 1.435 1.680 0.829 0.464 0.823 0.952 1.016 1.082 0.497 1.023 1.098 0.785 2.263 0.505 0.281 0.268 0.369 0.689 0.137 0.585 0.423 0.295 245 chr1 173833585 173838251 + 0 NA promoter-TSS (NR_002750) promoter-TSS (NR_002750) -65 NR_003942 692196 NR_003942 SNORD76 U76 small nucleolar RNA, C/D box 76 snoRNA 4.485 nan nan 3.428 3.935 1.763 2.509 3.108 0.552 2.607 1.386 3.687 7.873 6.243 0.230 5.164 5.413 8.101 12.252 nan 5.311 7.540 3.437 9.870 9.881 4.180 5.902 7.761 8.283 6.692 7.660 4.814 8.353 4.123 3.936 14.818 9.474 2.994 1.542 2.113 5.092 0.849 1.427 2.509 3.687 1.366 2.347 2.508 3.133 2358 chr8 49782256 49793545 + 0 NA Intergenic L1MD1|LINE|L1 46099 NM_003068 6591 Hs.360174 NM_003068 ENSG00000019549 SNAI2 SLUG|SLUGH|SLUGH1|SNAIL2|WS2D snail family transcriptional repressor 2 protein-coding 1.617 nan 1.756 0.039 0.175 0.063 0.251 0.193 0.102 1.102 0.351 0.053 0.564 0.039 0.087 0.403 0.268 0.232 0.412 0.752 0.634 5.320 2.027 0.201 0.131 0.395 0.726 0.093 0.065 0.464 0.302 0.259 0.407 4.157 4.864 0.223 0.477 2.388 1.167 0.025 0.063 1.326 0.049 0.251 0.053 0.102 0.134 0.061 0.100 308 chr1 232117320 232125888 + 0 NA intron (NM_001012957, intron 10 of 12) intron (NM_001012957, intron 10 of 12) 60024 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 1.062 1.555 1.326 0.347 0.611 0.207 0.843 0.169 0.077 0.160 0.183 0.307 0.784 0.038 0.127 0.384 0.332 4.005 11.162 0.533 0.567 nan 1.287 0.248 0.352 0.366 0.708 nan 0.418 0.358 0.192 0.178 0.232 0.149 0.123 0.313 0.527 nan 0.602 0.091 0.072 0.045 0.175 0.843 0.307 0.057 0.213 0.219 0.130 312 chr1 235322220 235334448 + 0 NA Intergenic MER103C|DNA|hAT-Charlie -3403 NR_144491 23029 Hs.535224 NM_015014 ENSG00000188739 RBM34 - RNA binding motif protein 34 protein-coding 2.082 2.024 1.799 1.334 1.216 0.540 1.080 0.989 0.153 0.704 0.527 1.117 2.509 1.120 0.175 1.895 1.963 5.172 10.263 2.113 2.190 nan 0.845 3.014 3.216 1.158 1.732 nan 2.605 1.453 0.965 0.604 0.939 1.055 1.529 1.291 1.822 nan 0.706 0.705 0.425 0.202 0.357 1.080 1.117 0.135 0.688 0.211 0.363 2288 chr7 99148300 99161703 + 0 NA Intergenic L3b|LINE|CR1 -1044 NM_138494 79027 Hs.599798 NM_024061 ENSG00000197343 ZNF655 VIK|VIK-1 zinc finger protein 655 protein-coding nan 1.397 nan 1.996 3.032 1.542 2.805 1.914 0.214 2.071 0.979 2.046 3.826 3.041 0.185 3.332 3.269 4.829 6.818 4.789 5.197 4.518 2.901 9.438 10.412 2.640 3.627 2.121 5.028 4.789 4.283 4.441 6.587 2.851 4.339 3.835 nan 3.351 1.627 1.382 2.001 0.353 1.129 2.805 2.046 0.543 1.249 0.975 0.779 1036 chr17 27319761 27348336 + 0 NA promoter-TSS (NM_001098635) promoter-TSS (NM_001098635) -590 NM_001290202 124925 Hs.21837 NM_178860 ENSG00000063015 SEZ6 BSRPC seizure related 6 homolog protein-coding nan nan nan 0.351 2.191 1.140 1.116 0.087 0.067 0.565 0.329 1.438 1.490 0.087 0.149 1.489 2.053 1.221 0.459 1.247 1.381 4.925 1.173 0.207 0.239 0.768 1.136 1.620 2.082 3.381 3.367 1.960 4.208 2.172 2.222 0.939 nan 2.139 1.157 2.075 0.856 0.745 0.272 1.116 1.438 0.290 0.461 2.375 0.632 575 chr12 12508975 12512940 + 0 NA promoter-TSS (NR_024061) promoter-TSS (NR_024061) 944 NM_058169 118426 Hs.504805 NM_058169 ENSG00000165714 BORCS5 LOH12CR1|LOH1CR12 BLOC-1 related complex subunit 5 protein-coding 6.447 2.876 6.062 8.782 4.047 2.455 3.151 0.566 0.080 3.753 1.733 6.087 8.438 2.870 0.257 3.263 4.047 4.225 6.148 nan 11.459 17.520 7.797 7.459 7.846 5.398 6.153 6.316 6.729 4.773 5.661 2.048 3.699 4.171 4.249 6.129 7.149 3.682 1.810 3.985 3.876 0.912 1.768 3.151 6.087 0.947 1.753 1.418 1.845 1684 chr21 40157733 40188042 + 0 NA Intergenic Intergenic -4344 NM_001256295 2114 Hs.644231 NM_005239 ENSG00000157557 ETS2 ETS2IT1 ETS proto-oncogene 2, transcription factor protein-coding nan 0.873 2.602 2.013 1.185 0.503 1.065 0.697 0.112 0.771 0.413 2.458 3.965 0.082 0.082 1.196 1.406 0.717 1.087 2.527 2.562 nan 0.788 0.315 0.349 0.596 nan 5.133 5.798 1.139 1.059 1.999 2.900 0.912 0.833 0.568 0.678 2.927 1.493 0.376 1.905 0.208 0.195 1.065 2.458 0.450 1.875 1.677 0.155 30 chr1 8873587 8891075 + 0 NA Intergenic Intergenic -4632 NM_012102 473 Hs.463041 NM_012102 ENSG00000142599 RERE ARG|ARP|ATN1L|DNB1|NEDBEH arginine-glutamic acid dipeptide repeats protein-coding 2.551 nan 3.279 7.838 1.935 1.121 1.662 1.422 0.304 1.118 0.666 1.336 4.033 1.436 0.131 1.841 2.562 1.346 2.225 6.598 7.071 3.564 0.989 3.329 3.415 2.309 nan nan 11.305 nan 3.806 2.005 3.127 1.560 1.710 2.734 4.790 1.988 0.991 2.555 3.475 0.423 0.650 1.662 1.336 0.580 1.488 1.700 1.378 2241 chr7 26104004 26145661 + 0 NA Intergenic AluSx|SINE|Alu -67015 NM_004289 9603 Hs.404741 NM_004289 ENSG00000050344 NFE2L3 NRF3 nuclear factor, erythroid 2 like 3 protein-coding 1.564 1.059 1.495 0.141 0.335 0.185 0.852 0.104 0.127 0.136 0.143 0.132 0.450 0.104 0.159 0.624 0.490 0.245 nan 0.432 0.566 1.131 0.352 0.432 0.481 0.646 0.962 0.475 0.546 1.295 1.025 0.230 0.288 0.151 0.197 1.149 nan 0.394 0.401 0.164 0.158 0.039 0.130 0.852 0.132 0.102 0.042 0.055 1.305 2278 chr7 73866541 73905454 + 0 NA intron (NM_001199207, intron 1 of 26) BC200|scRNA|scRNA 17877 NM_001199207 9569 Hs.647056 NM_005685 ENSG00000006704 GTF2IRD1 BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1 GTF2I repeat domain containing 1 protein-coding nan 1.227 1.126 0.815 2.712 1.455 1.435 1.525 0.464 1.097 0.600 4.063 2.367 3.780 0.243 1.054 1.449 1.654 nan 2.733 2.427 1.185 0.455 0.855 0.898 0.425 nan 2.761 nan 1.404 1.399 1.088 1.745 1.316 1.459 1.328 1.624 1.578 0.936 0.862 2.165 0.258 1.276 1.435 4.063 0.613 0.644 1.313 0.441 1861 chr3 181402806 181486221 + 0 NA intron (NR_004053, intron 4 of 4) CpG 14801 NM_003106 6657 Hs.518438 NM_003106 ENSG00000181449 SOX2 ANOP3|MCOPS3 SRY-box 2 protein-coding 1.310 5.472 2.103 1.938 2.268 1.156 0.693 0.123 0.156 1.275 0.712 0.275 1.633 5.177 0.168 0.345 0.368 0.662 0.940 0.832 0.812 8.705 3.739 0.119 0.127 2.748 3.347 1.151 1.610 0.803 0.387 0.177 0.252 5.169 4.303 0.141 0.214 1.613 0.936 0.078 0.242 1.392 1.732 0.693 0.275 0.076 0.293 0.045 0.043 517 chr11 111284943 111319737 + 0 NA Intergenic Intergenic -13429 NR_046085 100132078 Hs.672662 NR_046085 ENSG00000255428 LOC100132078 - uncharacterized LOC100132078 ncRNA 1.283 1.933 1.070 0.666 3.202 1.722 1.446 0.197 0.076 1.004 0.668 6.982 5.606 0.059 0.106 3.039 nan 3.145 5.923 7.793 9.732 4.140 1.035 0.793 0.750 1.711 nan 3.825 2.532 1.256 0.960 1.482 3.020 2.302 2.330 0.270 0.674 1.187 0.852 5.620 0.213 1.037 1.266 1.446 6.982 0.816 1.462 2.172 0.191 2040 chr5 158486248 158501462 + 0 NA intron (NM_182708, intron 5 of 14) intron (NM_182708, intron 5 of 14) 32915 NM_001324103 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 early B-cell factor 1 protein-coding 1.007 nan 1.186 0.063 0.510 0.243 0.783 0.547 0.085 0.370 0.290 0.528 0.314 0.051 0.108 0.796 0.670 0.097 0.104 1.879 2.042 0.068 0.045 0.069 0.058 0.506 0.783 0.088 0.129 1.810 1.519 0.531 0.916 0.159 0.115 1.080 2.822 0.920 0.532 0.694 1.691 0.025 3.222 0.783 0.528 0.158 0.020 1.092 0.492 1659 chr20 62723205 62734923 + 0 NA intron (NM_001318855, intron 1 of 2) intron (NM_001318855, intron 1 of 2) 5023 NM_001318855 4987 Hs.2859 NM_000913 ENSG00000125510 OPRL1 KOR-3|NOCIR|NOP|NOPr|OOR|ORL1 opioid related nociceptin receptor 1 protein-coding 1.574 1.105 2.024 0.262 4.254 1.949 0.427 0.096 0.041 0.442 0.315 2.099 1.422 0.692 0.065 1.947 nan 0.283 0.334 3.220 2.550 1.134 0.402 0.568 0.735 0.561 1.020 0.290 0.440 0.774 0.842 0.703 0.766 0.602 0.304 0.739 0.872 2.978 1.946 1.820 0.754 0.074 0.263 0.427 2.099 0.566 3.574 0.237 0.314 237 chr1 167071477 167080421 + 0 NA intron (NM_001080426, intron 2 of 5) intron (NM_001080426, intron 2 of 5) 12622 NM_001080426 92235 Hs.632462 NM_001080426 ENSG00000198842 DUSP27 - dual specificity phosphatase 27 (putative) protein-coding 1.467 nan 4.351 0.119 0.248 0.179 3.526 0.162 0.073 0.384 0.232 0.093 1.244 0.048 0.072 0.595 0.511 0.382 0.667 0.563 nan 8.295 1.793 0.204 0.243 0.354 0.563 1.376 nan 0.327 0.237 1.109 1.780 5.014 6.996 0.947 2.119 0.501 0.447 0.072 0.486 2.056 0.232 3.526 0.093 0.467 0.137 1.717 0.619 2352 chr8 37739913 37763940 + 0 NA intron (NM_001002814, intron 1 of 5) intron (NM_001002814, intron 1 of 5) 5089 NM_025151 80223 Hs.191179 NM_025151 ENSG00000156675 RAB11FIP1 NOEL1A|RCP|rab11-FIP1 RAB11 family interacting protein 1 protein-coding 1.338 2.780 nan 3.954 0.834 0.446 1.564 0.228 0.116 0.679 0.304 1.324 1.386 0.727 0.118 0.930 1.206 1.437 3.990 1.177 1.160 2.730 1.472 0.772 0.807 0.412 0.704 2.528 3.594 0.615 0.476 0.419 0.660 1.083 1.626 0.633 1.074 1.843 1.287 0.221 1.245 0.211 0.118 1.564 1.324 0.089 0.300 0.178 0.173 2354 chr8 42574223 42601728 + 0 NA intron (NM_000749, intron 5 of 5) intron (NM_000749, intron 5 of 5) 35413 NM_000749 1142 Hs.654576 NM_000749 ENSG00000147432 CHRNB3 - cholinergic receptor nicotinic beta 3 subunit protein-coding 0.703 nan 0.669 0.130 0.324 0.140 0.343 0.098 0.147 0.125 0.122 0.800 0.385 0.067 0.117 0.403 0.405 0.384 0.855 1.379 1.534 1.453 0.498 0.287 0.315 0.178 0.265 0.271 0.287 1.315 1.128 0.163 0.211 0.145 0.141 0.718 2.106 0.798 0.725 0.061 2.781 0.052 0.058 0.343 0.800 0.081 0.100 0.050 0.530 2505 chr9 36861879 36873739 + 0 NA intron (NM_001280549, intron 6 of 7) intron (NM_001280549, intron 6 of 7) -3504 NR_039766 100616278 NR_039766 ENSG00000264922 MIR4540 - microRNA 4540 ncRNA 0.874 nan 1.121 0.611 1.991 0.871 0.312 0.070 0.014 0.715 0.314 1.021 2.639 0.018 0.067 0.654 1.039 0.178 0.268 1.679 2.000 2.546 0.624 0.165 0.200 0.473 0.974 1.105 1.148 0.631 0.665 0.820 1.276 2.272 1.924 0.266 0.444 3.724 1.973 1.360 0.331 0.838 0.179 0.312 1.021 0.187 0.540 0.492 0.136 2386 chr8 86838631 86855544 + 0 NA Intergenic Intergenic -6916 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REX1, RNA exonuclease 1 homolog-like 2, pseudogene pseudo 0.941 nan nan 0.105 0.439 0.223 4.238 0.156 0.171 0.027 0.091 0.097 0.352 0.386 0.096 0.355 0.126 0.289 0.322 0.331 0.417 0.104 0.105 0.137 0.162 0.296 0.458 nan 0.423 0.286 0.061 0.137 0.262 0.092 0.201 0.217 0.288 0.205 0.346 0.102 0.092 0.107 0.071 4.238 0.097 0.029 0.061 0.025 0.029 1754 chr3 20121738 20141929 + 0 NA intron (NM_003884, intron 2 of 17) L1MA8|LINE|L1 -47224 NR_036086 100422901 NR_036086 ENSG00000266745 MIR3135A MIR3135|hsa-mir-3135a microRNA 3135a ncRNA 0.625 0.907 0.857 0.101 0.109 0.080 0.044 0.350 0.128 0.106 0.097 0.087 0.262 0.032 0.093 2.453 2.430 2.113 0.710 0.224 0.335 0.539 0.170 7.848 8.181 0.250 0.466 0.347 0.354 nan 0.309 1.255 2.226 0.106 0.095 0.291 0.755 0.562 0.438 0.082 0.071 0.019 0.048 0.044 0.087 0.012 0.141 1.251 0.139 2073 chr6 16799345 16807862 + 0 NA Intergenic Intergenic -41882 NM_001128164 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 1.210 nan 0.882 0.112 3.081 1.320 5.373 1.202 0.169 0.131 0.135 0.441 0.643 0.042 0.097 3.416 3.443 1.388 1.209 0.479 0.598 1.423 0.375 0.356 0.357 7.105 6.869 0.146 0.139 3.017 3.083 2.113 2.991 8.833 9.973 2.315 3.273 0.813 0.603 0.046 0.115 1.699 0.196 5.373 0.441 0.035 0.333 4.072 1.512 2590 chrX 40942888 40955844 + 0 NA intron (NM_001039591, intron 1 of 44) AluJb|SINE|Alu 4478 NM_001039591 8239 Hs.77578 NM_004652 ENSG00000124486 USP9X DFFRX|FAF|FAM|MRX99|MRXS99F ubiquitin specific peptidase 9, X-linked protein-coding 3.062 2.838 nan 2.243 1.779 1.121 1.432 1.785 0.262 1.473 0.686 1.773 4.598 1.104 0.058 1.238 1.367 3.352 5.014 5.130 4.653 3.069 1.976 10.144 10.412 1.827 2.189 3.621 6.406 6.364 6.485 2.561 3.719 2.362 2.557 4.425 4.319 1.256 0.733 1.140 1.641 0.639 1.614 1.432 1.773 0.654 0.943 1.536 1.402 149 chr1 90454292 90465977 + 0 NA promoter-TSS (NM_182975) promoter-TSS (NM_182975) 391 NR_002830 492303 Hs.550796 NR_002830 GEMIN8P4 - gem nuclear organelle associated protein 8 pseudogene 4 pseudo nan nan 4.299 1.726 1.630 0.918 1.383 0.934 0.235 0.617 0.312 1.692 3.332 1.261 0.138 2.292 2.232 3.225 4.346 4.054 nan 3.420 1.603 4.496 4.684 3.276 nan 4.534 6.333 nan 5.647 1.426 2.714 2.287 2.616 3.346 8.327 1.859 1.081 1.260 1.508 0.562 1.576 1.383 1.692 0.819 0.852 0.567 2.679 1823 chr3 154040705 154044683 + 0 NA promoter-TSS (NM_020865) promoter-TSS (NM_020865) -408 NM_001114397 170506 Hs.446270 NM_020865 ENSG00000174953 DHX36 DDX36|G4R1|MLEL1|RHAU DEAH-box helicase 36 protein-coding nan 3.036 1.823 5.627 4.410 2.375 2.638 2.131 0.212 2.733 1.268 3.039 2.860 1.436 0.105 7.239 6.621 14.419 11.467 5.425 4.115 10.061 4.614 11.024 10.649 4.001 nan 3.455 6.555 8.857 8.312 6.086 9.889 1.979 2.462 4.770 4.126 3.256 2.412 1.412 1.647 0.215 2.230 2.638 3.039 0.905 1.124 3.559 1.116 91 chr1 38313482 38329224 + 0 NA intron (NM_005955, intron 2 of 10) AluSq|SINE|Alu 3939 NM_005955 4520 Hs.471991 NM_005955 ENSG00000188786 MTF1 MTF-1|ZRF metal regulatory transcription factor 1 protein-coding 1.896 nan 1.473 2.333 1.118 0.529 0.591 0.607 0.205 0.526 0.479 1.050 2.338 0.912 0.162 0.787 1.043 0.874 1.482 1.946 1.914 nan 0.578 1.838 1.934 1.750 2.291 7.468 8.438 nan 1.513 1.274 1.997 0.639 0.596 1.764 2.319 1.124 nan 0.466 0.600 0.031 0.349 0.591 1.050 0.265 0.389 0.452 0.515 489 chr11 73561588 73589375 + 0 NA non-coding (NR_134658, exon 7 of 7) non-coding (NR_134658, exon 7 of 7) -12263 NM_001267806 80227 Hs.525017 NM_025155 ENSG00000175575 PAAF1 PAAF|Rpn14|WDR71 proteasomal ATPase associated factor 1 protein-coding nan 1.115 1.015 0.944 0.971 0.542 0.880 0.396 0.186 0.426 0.272 0.817 1.572 0.701 0.123 1.959 1.618 1.095 1.428 1.887 1.885 1.826 0.718 4.138 4.557 1.479 2.025 1.786 2.537 1.435 1.386 1.182 1.791 1.227 1.478 0.953 1.522 1.599 0.929 2.550 0.644 0.164 0.361 0.880 0.817 0.291 0.546 0.548 0.413 1381 chr19 59048406 59058200 + 0 NA promoter-TSS (NM_001316980) promoter-TSS (NM_001316980) -224 NM_001316980 84878 Hs.515662 NM_032792 ENSG00000119574 ZBTB45 ZNF499 zinc finger and BTB domain containing 45 protein-coding 2.904 1.770 2.444 2.447 5.194 2.620 2.992 0.930 0.330 0.980 0.471 4.277 4.119 1.897 0.115 4.586 6.196 2.197 3.127 5.095 4.723 7.689 3.496 2.502 2.684 1.771 2.571 2.571 4.195 4.230 3.969 2.545 3.860 3.533 3.005 3.585 4.120 2.623 1.389 1.933 2.426 0.743 1.988 2.992 4.277 1.152 0.858 1.220 1.466 1302 chr19 38144362 38148000 + 0 NA 5' UTR (NM_014898, exon 1 of 6) 5' UTR (NM_014898, exon 1 of 6) 132 NM_001320666 22835 Hs.716719 NM_014898 ENSG00000120784 ZFP30 ZNF745 ZFP30 zinc finger protein protein-coding 8.440 4.356 4.877 12.998 7.228 3.693 4.258 2.105 0.223 1.830 1.314 6.778 28.265 6.233 0.138 4.175 5.636 3.351 5.741 15.176 12.394 12.758 5.428 14.748 15.680 3.953 5.279 7.244 9.740 nan 10.584 3.928 6.801 7.460 6.602 6.079 7.987 5.411 2.680 6.321 7.630 1.151 3.157 4.258 6.778 1.678 3.679 3.228 2.679 203 chr1 155821956 155832354 + 0 NA promoter-TSS (NM_032292) promoter-TSS (NM_032292) -69 NM_001282858 54856 Hs.656361 NM_032292 ENSG00000116580 GON4L GON-4|GON4|YARP gon-4 like protein-coding nan nan 1.967 2.068 2.139 1.421 4.293 1.738 0.401 3.324 1.304 3.160 15.301 3.163 0.170 2.701 2.782 2.186 2.767 7.967 nan 7.128 4.929 1.330 1.816 4.979 5.767 3.885 7.689 4.629 4.292 2.585 3.098 3.716 4.768 3.947 5.365 2.475 1.158 1.749 1.284 0.723 0.960 4.293 3.160 1.110 3.365 1.384 1.517 1388 chr2 2010605 2020699 + 0 NA intron (NM_001329845, intron 4 of 24) L1MB8|LINE|L1 -267333 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin protein-coding 0.669 0.642 0.670 0.053 0.395 0.238 0.421 0.090 0.129 0.201 0.196 0.224 0.716 0.033 0.146 0.732 1.282 0.193 0.360 0.579 0.646 2.941 0.458 0.120 0.169 2.025 3.002 0.849 0.764 4.860 6.697 0.396 0.496 0.281 0.366 1.351 3.053 0.400 0.424 0.235 0.172 0.019 0.340 0.421 0.224 2.340 0.060 0.473 0.480 2099 chr6 30836168 30859606 + 0 NA Intergenic Intergenic -2503 NM_001297652 780 Hs.631988 NM_001954 ENSG00000204580 DDR1 CAK|CD167|DDR|EDDR1|HGK2|MCK10|NEP|NTRK4|PTK3|PTK3A|RTK6|TRKE discoidin domain receptor tyrosine kinase 1 protein-coding nan 2.286 nan 0.979 1.520 0.759 4.363 1.000 0.248 0.382 0.204 2.183 3.898 1.155 0.112 1.947 2.517 4.793 nan nan 2.315 5.109 1.680 1.026 1.077 1.005 1.691 2.172 2.735 1.032 1.317 0.788 1.574 1.658 1.540 0.579 0.851 1.412 0.846 3.418 2.213 0.491 1.433 4.363 2.183 0.662 1.223 1.134 0.248 595 chr12 31224483 31234447 + 0 NA intron (NM_152438, intron 1 of 26) MIRb|SINE|MIR -2684 NR_038927 100506660 Hs.586774 NR_038927 ENSG00000245614 DDX11-AS1 CONCR DDX11 antisense RNA 1 ncRNA 2.870 nan 3.682 4.888 2.574 1.209 2.288 0.912 0.033 1.739 1.150 2.672 5.365 1.555 0.101 3.179 2.958 3.005 4.326 7.747 7.128 5.487 3.192 6.340 7.147 2.325 2.932 3.905 6.207 3.038 3.316 1.659 3.083 9.534 11.768 2.505 3.127 2.338 1.328 3.321 2.665 3.737 1.617 2.288 2.672 0.652 2.744 1.240 1.111 2255 chr7 39987408 39994173 + 0 NA exon (NM_031267, exon 1 of 14) exon (NM_031267, exon 1 of 14) 831 NM_031267 8621 Hs.233552 NM_003718 ENSG00000065883 CDK13 CDC2L|CDC2L5|CHED|hCDK13 cyclin dependent kinase 13 protein-coding 7.991 4.710 7.963 4.425 5.272 2.705 3.891 3.663 0.403 2.888 1.564 4.880 10.138 6.221 0.168 5.900 8.501 5.352 8.595 9.844 nan 7.599 3.088 18.362 18.638 4.445 nan nan 10.948 5.502 6.400 4.121 10.204 5.684 5.095 7.606 nan 2.897 1.720 3.090 6.126 1.465 8.241 3.891 4.880 1.075 4.402 1.903 3.311 1566 chr20 678087 714271 + 0 NA Intergenic L1MEc|LINE|L1 -39356 NM_033129 85508 Hs.355284 NM_033129 ENSG00000215397 SCRT2 ZNF898B scratch family transcriptional repressor 2 protein-coding 1.002 1.079 1.063 0.121 0.298 0.124 0.274 0.084 0.077 0.139 0.140 0.064 0.828 0.192 0.082 3.611 5.030 0.229 0.284 0.282 0.275 0.376 0.128 0.267 0.273 0.446 0.703 0.229 0.219 0.920 0.726 0.609 0.724 0.082 0.108 0.422 0.657 0.209 0.234 0.042 0.076 0.027 0.046 0.274 0.064 0.793 0.108 0.292 0.058 2391 chr8 93098855 93122866 + 0 NA intron (NM_175634, intron 1 of 11) intron (NM_175634, intron 1 of 11) 1056 NM_001198628 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 translocation partner 1 protein-coding nan 1.423 4.489 3.711 1.338 0.761 2.659 1.589 0.173 0.764 0.618 3.170 12.039 0.052 0.071 0.218 0.159 0.311 nan 5.506 4.879 2.624 0.828 0.280 0.247 1.297 1.619 3.453 4.504 5.804 8.062 0.164 0.212 1.219 0.593 2.968 4.676 0.952 0.594 5.119 2.989 0.480 2.931 2.659 3.170 0.685 2.325 0.066 1.006 541 chr11 129715757 129737326 + 0 NA intron (NM_138788, intron 4 of 5) AluY|SINE|Alu 36363 NM_006165 4798 Hs.530539 NM_006165 ENSG00000170322 NFRKB INO80G nuclear factor related to kappaB binding protein protein-coding 0.612 1.716 0.768 0.706 0.472 0.289 0.581 0.132 0.067 0.284 0.199 0.480 1.329 0.165 0.124 0.645 0.862 1.406 4.168 0.769 0.635 0.762 0.243 0.837 0.864 0.239 0.522 1.324 1.468 0.488 0.371 0.710 0.837 0.275 0.447 0.240 nan 0.691 0.485 1.114 0.346 0.069 0.069 0.581 0.480 0.027 0.329 0.270 0.161 1000 chr17 1943346 1946357 + 0 NA promoter-TSS (NM_080822) promoter-TSS (NM_080822) -426 NM_080822 124641 Hs.513856 NM_080822 ENSG00000262664 OVCA2 - ovarian tumor suppressor candidate 2 protein-coding 6.637 2.495 3.590 1.690 3.534 2.399 3.293 1.263 0.004 0.782 0.413 3.504 6.774 5.956 0.181 4.612 7.774 4.815 6.352 6.901 6.925 6.017 3.098 4.099 4.087 3.436 5.344 4.615 7.047 10.256 12.777 1.268 2.511 2.722 2.461 14.269 17.508 2.275 1.190 3.233 2.169 0.662 1.150 3.293 3.504 1.970 5.601 0.483 10.432 2416 chr8 116659349 116681339 + 0 NA intron (NM_001282903, intron 1 of 6) intron (NM_001282903, intron 1 of 6) 9895 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding nan nan 1.840 0.143 0.279 0.117 0.069 0.474 0.146 0.185 0.115 0.088 0.581 0.085 0.078 0.405 0.378 0.501 0.597 1.077 1.058 nan 0.143 1.892 nan 3.954 nan 0.553 0.668 3.115 2.698 0.115 0.223 1.389 1.177 0.726 1.210 1.029 0.815 0.023 0.090 0.317 0.148 0.069 0.088 0.053 0.487 0.063 0.297 1636 chr20 52463563 52544191 + 0 NA Intergenic AT_rich|Low_complexity|Low_complexity -11629 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 1.246 1.625 1.122 0.503 1.149 0.655 0.751 1.166 0.220 0.063 0.081 0.211 0.359 4.949 0.221 0.671 nan 0.923 2.781 1.160 1.208 0.165 0.094 0.596 0.641 0.778 1.092 1.635 1.840 1.751 1.607 0.495 0.804 0.043 0.061 0.639 1.581 0.239 0.331 0.703 1.240 0.017 0.394 0.751 0.211 0.452 0.276 0.620 0.369 1400 chr2 8703360 8727580 + 0 NA intron (NR_110257, intron 4 of 5) intron (NR_110257, intron 4 of 5) 8452 NR_110257 101929567 Hs.634706 NR_110257 ENSG00000236008 LINC01814 - long intergenic non-protein coding RNA 1814 ncRNA 1.117 0.839 1.650 2.880 1.420 0.675 0.799 0.150 0.073 2.454 0.779 6.310 1.432 0.148 0.094 2.432 3.005 0.565 0.850 3.659 3.990 6.846 2.537 2.577 2.700 0.378 0.675 4.939 4.572 0.896 0.959 2.673 3.771 1.269 1.256 0.606 1.138 1.341 0.863 0.372 3.952 0.349 1.750 0.799 6.310 0.220 3.547 3.378 0.380 1020 chr17 12658549 12672296 + 0 NA non-coding (NR_104607, exon 2 of 2) non-coding (NR_104607, exon 2 of 2) -27407 NR_135569 9912 Hs.499758 NM_014859 ENSG00000006740 ARHGAP44 NPC-A-10|RICH2 Rho GTPase activating protein 44 protein-coding 0.619 0.414 0.458 1.369 4.547 1.858 0.066 0.043 0.058 0.058 0.052 0.095 0.257 0.025 0.045 0.437 0.398 0.187 nan 0.850 0.840 0.101 0.071 0.122 0.084 0.091 0.178 0.165 0.145 nan 0.549 0.074 0.087 0.045 0.036 0.153 0.212 0.100 0.131 0.024 0.020 0.006 0.066 0.095 0.007 0.030 0.021 0.030 2509 chr9 37463912 37468524 + 0 NA promoter-TSS (NM_014872) promoter-TSS (NM_014872) -811 NM_014872 9925 Hs.161276 NM_014872 ENSG00000168795 ZBTB5 - zinc finger and BTB domain containing 5 protein-coding 4.976 9.519 4.882 5.577 4.299 2.048 4.434 2.880 0.527 2.063 1.171 4.800 12.003 5.813 0.225 3.401 3.604 7.597 9.262 7.046 4.622 12.072 5.385 10.399 9.792 2.725 3.567 5.847 10.174 5.421 5.761 2.961 5.474 7.794 8.292 5.066 5.529 5.102 2.839 5.045 4.139 1.678 3.610 4.434 4.800 0.693 1.951 2.829 1.302 1120 chr17 75066339 75103584 + 0 NA promoter-TSS (NR_106997) promoter-TSS (NR_106997) 236 NM_001204408 6397 Hs.464184 NM_003003 ENSG00000129657 SEC14L1 PRELID4A|SEC14L SEC14 like lipid binding 1 protein-coding 1.513 1.530 1.087 1.303 1.885 1.007 1.276 0.774 0.276 1.172 0.894 1.019 2.070 0.448 0.118 1.862 1.825 0.729 1.038 1.339 1.304 3.737 0.893 7.154 7.652 nan 1.666 1.634 2.109 2.130 1.726 0.980 1.206 1.950 2.087 1.029 1.777 nan 0.996 0.458 0.405 0.634 0.248 1.276 1.019 0.246 0.597 0.654 0.476 1315 chr19 40314109 40337877 + 0 NA intron (NM_001436, intron 7 of 8) AluSc|SINE|Alu -1120 NM_004714 9149 Hs.130988 NM_004714 ENSG00000105204 DYRK1B AOMS3|MIRK dual specificity tyrosine phosphorylation regulated kinase 1B protein-coding 2.416 1.190 2.856 4.027 1.556 1.085 0.840 0.429 0.102 1.119 0.655 1.269 5.794 1.208 0.108 2.219 2.470 1.683 2.421 3.022 2.834 4.514 1.795 4.572 4.874 1.630 2.145 2.175 3.701 4.685 4.327 1.544 2.480 1.971 2.437 2.547 2.747 2.581 1.383 0.928 1.483 0.361 0.416 0.840 1.269 0.383 2.000 0.904 0.668 2064 chr6 10380240 10390169 + 0 NA Intergenic CpG -27347 NR_033910 100130275 Hs.661431 NR_033910 TFAP2A-AS1 - TFAP2A antisense RNA 1 ncRNA 0.921 nan 0.938 0.976 1.400 0.612 0.293 0.085 0.048 0.887 0.456 0.835 0.358 0.054 0.099 4.284 4.160 8.094 7.382 0.555 0.452 3.213 0.833 1.882 1.976 0.154 0.376 0.112 0.114 0.443 0.203 1.739 3.803 5.412 5.926 0.242 0.421 0.573 0.566 0.090 0.233 0.988 1.876 0.293 0.835 0.020 0.366 2.509 0.049 4 chr1 1163899 1174885 + 0 NA 3' UTR (NM_080605, exon 1 of 1) 3' UTR (NM_080605, exon 1 of 1) 1763 NM_080605 126792 Hs.284284 NM_080605 ENSG00000176022 B3GALT6 EDSP2|SEMDJL1|beta3GalT6 beta-1,3-galactosyltransferase 6 protein-coding 2.114 nan 2.179 2.375 1.115 0.699 0.782 0.863 0.191 0.707 0.263 0.731 2.037 1.372 0.094 3.256 4.496 1.644 2.804 3.181 3.133 1.379 0.627 6.189 6.240 1.835 nan nan 12.768 nan 1.409 2.112 3.409 0.921 0.894 1.769 1.442 1.268 0.759 1.165 1.353 0.086 5.197 0.782 0.731 0.419 0.835 0.686 0.573 1886 chr4 38008859 38018766 + 0 NA intron (NM_015173, intron 2 of 19) intron (NM_015173, intron 2 of 19) 51756 NM_006607 10744 Hs.668806 NM_006607 ENSG00000250254 PTTG2 - pituitary tumor-transforming 2 protein-coding 0.858 0.628 0.849 0.497 0.281 0.081 0.348 0.219 0.146 3.186 1.046 0.096 1.176 0.066 0.073 0.448 0.320 0.968 3.392 0.372 0.369 2.768 1.320 0.180 0.247 1.111 1.545 0.562 0.712 0.975 0.640 0.257 0.387 0.712 0.903 0.394 0.764 4.045 2.094 0.113 0.262 0.238 0.161 0.348 0.096 0.117 0.020 0.120 0.236 1686 chr21 40307107 40382177 + 0 NA Intergenic LTR85a|LTR|Gypsy? 5058 NR_109962 101928435 Hs.385528 NR_109962 ENSG00000232837 LINC01700 - long intergenic non-protein coding RNA 1700 ncRNA nan 0.696 0.896 1.849 1.602 0.778 0.786 0.434 0.085 0.632 0.386 5.317 2.908 0.051 0.076 0.451 0.431 0.293 0.480 4.110 4.595 nan 0.786 0.289 0.284 0.136 nan 6.481 6.902 0.513 0.336 0.265 0.404 0.657 0.523 0.154 0.246 3.631 1.886 1.104 2.910 0.123 0.295 0.786 5.317 0.115 1.734 0.194 0.116 193 chr1 154966174 154996160 + 0 NA intron (NR_049765, intron 2 of 3) intron (NR_049765, intron 2 of 3) 6061 NR_045515 51043 Hs.729279 NM_001252406 ENSG00000160685 ZBTB7B CKROX|THPOK|ZBTB15|ZFP-67|ZFP67|ZNF857B|c-KROX|hcKROX zinc finger and BTB domain containing 7B protein-coding nan nan 4.032 2.431 2.498 1.320 3.519 2.312 0.350 1.620 0.685 1.972 6.750 2.584 0.122 3.152 3.853 2.178 3.108 2.972 nan 2.563 0.816 3.477 3.702 1.919 2.606 4.204 4.894 2.409 1.989 3.468 5.397 1.968 1.947 2.363 4.751 1.312 0.704 1.603 3.410 0.610 1.587 3.519 1.972 1.143 2.472 2.856 1.667 2423 chr8 128012462 128032428 + 0 NA Intergenic Intergenic -2954 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 (non-protein coding) ncRNA nan nan nan 0.138 0.309 0.207 0.083 0.183 0.111 0.063 0.067 0.126 nan 0.038 0.089 0.230 0.122 5.745 3.011 0.343 0.415 0.162 0.140 nan nan 3.843 5.986 0.174 0.283 0.245 0.103 0.111 0.176 0.073 0.085 0.216 0.271 0.291 0.395 0.036 0.048 0.019 0.063 0.083 0.126 0.116 0.015 0.039 0.100 2383 chr8 77577389 77622684 + 0 NA intron (NM_024721, intron 1 of 10) intron (NM_024721, intron 1 of 10) -4526 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 1.269 0.657 0.976 0.276 0.322 0.198 1.059 1.959 0.234 0.352 0.208 0.064 0.311 3.839 0.120 1.172 0.945 4.511 4.778 1.764 1.706 0.605 0.187 5.730 5.817 1.033 1.343 0.377 0.437 1.122 0.819 0.609 1.718 3.709 3.529 0.365 0.711 1.033 0.660 0.169 1.604 0.901 0.032 1.059 0.064 0.011 0.549 0.420 0.131 71 chr1 31220195 31224625 + 0 NA intron (NM_006762, intron 1 of 7) intron (NM_006762, intron 1 of 7) 8273 NM_006762 7805 Hs.371021 NM_006762 ENSG00000162511 LAPTM5 CLAST6 lysosomal protein transmembrane 5 protein-coding 4.465 nan 2.628 0.220 4.000 2.463 0.887 0.321 0.296 0.183 2.677 1.639 0.245 0.127 0.437 0.824 0.309 0.610 3.668 4.076 nan 0.229 0.439 0.448 4.389 4.971 4.490 5.874 nan 2.993 2.113 4.015 3.071 3.071 0.560 0.728 0.749 nan 1.990 0.700 1.154 0.313 0.887 2.677 3.081 3.505 5.665 0.111 1971 chr5 50665802 50696682 + 0 NA intron (NM_002202, intron 2 of 5) intron (NM_002202, intron 2 of 5) -2076 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA nan nan 0.640 0.800 2.945 1.577 1.765 0.068 0.052 1.797 1.185 4.714 3.747 0.669 0.123 0.133 0.093 6.087 6.879 20.274 19.857 nan 0.704 0.057 0.041 0.163 0.239 0.434 0.673 nan 1.940 0.055 0.071 6.979 5.346 0.195 0.315 1.677 1.031 3.917 4.556 2.144 1.242 1.765 4.714 0.136 0.128 0.013 0.087 2129 chr6 42846361 42849189 + 0 NA intron (NR_134563, intron 1 of 5) intron (NR_134563, intron 1 of 5) 421 NR_134562 285855 Hs.520133 NM_198486 ENSG00000146223 RPL7L1 dJ475N16.4 ribosomal protein L7 like 1 protein-coding 8.512 3.494 6.133 8.483 6.703 3.260 8.708 4.786 0.695 2.510 1.623 11.093 9.229 6.408 0.257 10.482 8.650 10.413 14.534 12.955 12.191 18.618 10.994 20.021 21.183 6.819 8.826 16.254 24.216 15.226 15.252 7.392 8.990 9.159 10.375 11.234 12.670 7.475 3.680 3.413 3.268 0.829 2.567 8.708 11.093 1.573 3.595 1.725 4.229 1266 chr19 13075481 13088920 + 0 NA intron (NM_152654, intron 1 of 1) AluSx|SINE|Alu 1768 NM_152654 199699 Hs.331981 NM_152654 ENSG00000179284 DAND5 CER2|CERL2|CKTSF1B3|COCO|CRL2|DANTE|GREM3|SP1 DAN domain BMP antagonist family member 5 protein-coding 2.361 0.957 8.372 0.486 1.085 0.429 0.540 0.722 0.622 0.398 0.215 1.000 0.692 0.630 0.108 0.627 1.292 1.061 1.534 2.224 2.062 2.049 0.638 0.523 0.633 3.524 3.868 1.151 1.532 5.260 5.385 0.449 0.554 1.763 1.955 1.120 2.212 2.861 1.349 1.214 0.362 0.478 0.271 0.540 1.000 0.941 0.574 0.060 1.406 1896 chr4 56410833 56415005 + 0 NA promoter-TSS (NM_001267843) promoter-TSS (NM_001267843) 157 NM_004898 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding nan 2.636 3.292 7.087 7.399 4.847 5.630 3.553 0.542 3.341 2.292 7.032 11.481 4.752 0.079 4.516 6.636 4.269 5.686 8.964 7.563 8.182 3.451 12.701 12.661 7.630 8.375 9.800 12.074 9.180 12.565 3.495 8.465 5.299 4.339 5.860 6.349 8.669 4.717 5.297 8.801 1.402 3.312 5.630 7.032 1.160 5.640 3.716 3.181 1383 chr19 59082969 59088320 + 0 NA promoter-TSS (NM_003422) promoter-TSS (NM_003422) -702 NM_198055 7593 Hs.399810 NM_003422 ENSG00000099326 MZF1 MZF-1|MZF1B|ZFP98|ZNF42|ZSCAN6 myeloid zinc finger 1 protein-coding 5.251 3.368 4.421 5.385 9.713 5.116 4.821 2.537 0.464 2.222 0.820 4.370 10.193 5.421 0.284 7.007 8.718 3.257 5.790 9.166 8.283 13.462 9.256 6.310 6.971 6.208 8.256 9.844 13.157 8.292 8.676 2.278 3.708 7.023 6.198 7.307 8.615 5.582 3.420 4.561 6.665 1.296 3.109 4.821 4.370 2.110 2.707 1.637 2.411 400 chr11 6341979 6355774 + 0 NA Intergenic MSTD|LTR|ERVL-MaLR -7136 NM_145040 112464 Hs.434044 NM_145040 ENSG00000170955 PRKCDBP CAVIN3|HSRBC|SRBC|cavin-3 protein kinase C delta binding protein protein-coding 0.528 1.197 0.674 0.373 0.232 0.118 0.139 0.811 0.187 0.897 0.484 0.892 0.440 0.014 0.082 0.553 0.269 0.239 0.433 0.268 0.361 8.093 2.805 0.176 0.215 0.178 0.308 1.289 1.174 0.416 0.260 0.167 0.293 1.895 1.867 0.103 0.199 1.988 1.054 0.026 0.204 0.361 0.035 0.139 0.892 0.071 0.107 0.043 0.045 652 chr12 104349323 104361681 + 0 NA Intergenic AluSx1|SINE|Alu -4091 NM_003211 6996 Hs.584809 NM_003211 ENSG00000139372 TDG hTDG thymine DNA glycosylase protein-coding 3.204 2.098 nan 2.783 3.127 1.543 2.349 2.148 0.418 1.520 0.981 2.940 5.693 3.126 0.161 3.780 3.396 4.113 5.469 5.361 5.593 5.622 2.566 9.131 9.851 3.137 3.901 5.685 7.899 6.547 6.233 2.689 4.027 4.325 4.569 3.451 4.405 3.843 1.950 2.733 2.599 0.732 1.201 2.349 2.940 1.031 1.545 1.148 1.364 353 chr10 25136631 25146830 + 0 NA intron (NM_020200, intron 7 of 8) intron (NM_020200, intron 7 of 8) 99843 NM_001282786 56952 Hs.405619 NM_020200 ENSG00000099256 PRTFDC1 HHGP phosphoribosyl transferase domain containing 1 protein-coding 0.619 1.930 2.914 0.365 1.390 0.807 0.565 0.653 0.222 0.583 0.499 0.985 2.361 0.044 0.086 0.551 0.330 0.929 1.825 0.465 0.464 7.051 2.914 0.059 0.086 0.557 0.757 0.736 0.862 0.222 0.087 0.060 0.122 1.056 2.154 0.297 0.484 1.318 0.796 0.119 0.270 0.177 1.145 0.565 0.985 0.029 0.758 0.020 0.205 428 chr11 33881691 33900037 + 0 NA intron (NM_001142315, intron 2 of 3) CpG 507 NM_001142316 4005 Hs.34560 NM_005574 ENSG00000135363 LMO2 RBTN2|RBTNL1|RHOM2|TTG2 LIM domain only 2 protein-coding 1.113 1.230 nan 0.354 1.094 0.620 0.708 0.429 0.114 1.408 0.595 0.255 2.559 0.094 0.092 2.271 3.501 1.707 0.989 0.865 0.978 0.268 0.112 0.441 0.368 1.469 2.131 0.376 0.448 0.580 0.441 4.023 5.411 0.403 0.321 0.275 nan 2.751 1.534 2.728 0.536 0.212 0.514 0.708 0.255 0.656 0.039 2.298 0.087 218 chr1 159141322 159159133 + 0 NA intron (NM_001346510, intron 1 of 8) intron (NM_001346510, intron 1 of 8) 8678 NM_001346510 57863 Hs.365689 NM_021189 ENSG00000162706 CADM3 BIgR|IGSF4B|NECL1|Necl-1|TSLL1|synCAM3 cell adhesion molecule 3 protein-coding nan nan 1.318 0.039 0.189 0.144 0.079 0.097 0.090 0.124 0.186 0.054 0.521 0.062 0.091 0.571 0.610 0.366 0.454 0.297 nan 0.166 0.095 0.054 0.068 4.012 4.653 0.717 0.951 2.105 2.026 0.790 1.153 0.089 0.090 0.685 1.439 0.669 0.589 0.216 0.119 0.026 0.045 0.079 0.054 0.148 0.029 0.390 0.217 8 chr1 2984263 3005056 + 0 NA intron (NM_199454, intron 1 of 16) intron (NM_199454, intron 1 of 16) 8917 NM_022114 63976 Hs.99500 NM_022114 ENSG00000142611 PRDM16 CMD1LL|KMT8F|LVNC8|MEL1|PFM13 PR/SET domain 16 protein-coding 0.714 nan 0.450 0.068 0.679 0.424 0.203 0.043 0.069 0.023 0.042 0.029 0.285 0.532 0.099 0.156 0.088 0.196 0.288 0.234 0.323 0.051 0.053 0.148 0.092 0.092 nan nan 0.112 nan 0.055 0.123 0.133 0.049 0.070 0.063 0.075 0.128 0.178 7.022 0.030 0.019 0.015 0.203 0.029 0.140 0.010 0.018 1306 chr19 39263420 39299491 + 0 NA exon (NM_001042507, exon 3 of 4) exon (NM_001042507, exon 3 of 4) 1605 NM_001042507 653499 Hs.558355 NM_001042507 ENSG00000178934 LGALS7B GAL7|Gal-7|HKL-14|LGALS7|PI7 galectin 7B protein-coding 0.998 1.818 0.814 1.157 0.300 0.173 0.478 0.124 0.224 0.130 0.100 0.246 3.641 0.105 0.099 0.277 0.288 0.237 0.443 0.404 0.394 1.550 0.337 0.457 0.511 0.612 0.946 0.692 0.885 nan 0.645 0.442 0.349 0.602 1.142 0.578 1.775 0.989 0.788 0.392 0.486 0.164 0.062 0.478 0.246 0.339 0.222 0.082 0.634 2019 chr5 138627819 138634578 + 0 NA intron (NM_001194956, intron 1 of 13) intron (NM_001194956, intron 1 of 13) 1759 NM_001194956 9782 Hs.268939 NM_018834 ENSG00000015479 MATR3 ALS21|MPD2|VCPDM matrin 3 protein-coding 5.280 3.963 nan 3.190 5.779 3.209 2.313 2.533 0.236 1.342 0.911 5.409 11.374 4.089 0.153 4.453 4.534 8.037 10.349 6.495 6.322 6.121 4.023 13.768 14.890 4.301 5.230 6.058 9.485 8.871 10.548 7.954 13.774 7.823 9.100 7.519 5.954 2.510 1.407 2.662 3.954 1.536 2.079 2.313 5.409 1.002 3.257 3.683 2.503 1613 chr20 40598088 40610064 + 0 NA Intergenic Intergenic -356943 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding nan nan 0.880 0.066 0.208 0.093 0.194 0.068 0.053 0.135 0.078 0.366 0.045 0.090 0.550 0.384 0.150 0.234 0.136 0.220 nan 0.075 0.155 0.166 0.207 0.402 0.247 0.370 nan 1.200 0.232 0.385 0.081 0.081 1.603 4.571 0.258 0.376 0.260 0.112 0.039 0.094 0.194 0.078 0.008 0.055 0.074 3.755 63 chr1 27344516 27358851 + 0 NA Intergenic AluSz|SINE|Alu -12350 NM_052943 115572 Hs.632378 NM_052943 ENSG00000158246 FAM46B - family with sequence similarity 46 member B protein-coding 1.038 0.926 nan 2.358 0.686 0.415 0.196 0.184 0.157 0.707 0.273 0.712 0.754 0.144 0.152 0.305 0.323 0.246 0.400 0.877 1.240 3.664 1.427 0.450 0.458 0.347 0.632 3.080 3.423 0.594 0.369 0.500 0.559 2.363 2.292 0.789 1.675 3.047 1.305 0.082 1.392 0.526 0.046 0.196 0.712 0.167 0.604 0.158 0.364 1856 chr3 180890377 180895495 + 0 NA promoter-TSS (NR_075093) promoter-TSS (NR_075093) 4 NR_075093 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 1.070 1.084 0.841 0.220 0.419 0.360 0.099 0.132 0.096 0.242 0.260 0.352 0.621 0.254 0.114 0.271 0.189 0.209 0.273 1.333 1.230 14.867 7.089 0.170 0.183 0.250 0.291 0.261 0.374 0.587 0.355 0.081 0.205 0.124 0.122 0.292 0.547 0.974 0.703 0.021 0.156 0.052 0.753 0.099 0.352 0.039 0.038 0.072 99 chr1 41090445 41129816 + 0 NA intron (NM_014747, intron 2 of 7) L2b|LINE|L2 21194 NM_014747 9783 Hs.654808 NM_014747 ENSG00000117016 RIMS3 NIM3|RIM3 regulating synaptic membrane exocytosis 3 protein-coding 12.410 0.675 nan 0.129 0.640 0.286 15.194 0.133 0.140 0.263 0.187 0.782 0.675 0.113 0.129 0.576 0.940 0.196 0.328 1.901 1.578 0.575 0.202 0.369 0.383 0.519 nan nan 1.231 0.552 0.453 0.820 nan 0.287 0.269 0.655 1.538 1.716 1.115 0.755 0.396 0.043 0.496 15.194 0.782 0.138 0.131 0.341 0.387 1740 chr22 45105685 45112697 + 0 NA intron (NM_001017528, intron 2 of 8) intron (NM_001017528, intron 2 of 8) 11113 NM_181334 553158 Hs.102336 NM_181334 ENSG00000248405 PRR5-ARHGAP8 - PRR5-ARHGAP8 readthrough protein-coding 1.055 nan 1.187 0.371 0.329 0.237 0.215 0.075 0.115 0.312 0.153 0.443 0.847 0.263 0.067 0.507 0.541 0.352 0.456 0.622 0.569 2.731 0.936 3.196 3.109 0.070 nan 3.027 2.992 nan 0.515 0.365 0.496 0.389 0.334 0.262 0.463 1.336 1.088 0.362 0.594 0.041 0.068 0.215 0.443 0.138 4.636 0.043 0.069 1692 chr21 45230116 45236575 + 0 NA promoter-TSS (NR_026961) promoter-TSS (NR_026961) -897 NR_026961 284837 Hs.592159 NM_194310 ENSG00000215458 AATBC - apoptosis associated transcript in bladder cancer ncRNA nan 2.750 3.035 0.558 0.701 0.496 0.653 0.105 0.168 0.171 0.114 0.771 11.274 0.066 0.032 0.678 0.997 0.508 0.721 1.681 1.338 nan 0.222 0.456 0.381 0.765 nan 1.922 3.600 1.235 1.345 1.015 0.893 2.618 2.112 0.438 1.091 2.557 1.232 7.040 1.278 0.506 0.232 0.653 0.771 2.386 0.316 0.214 0.250 232 chr1 165187599 165212487 + 0 NA intron (NM_177398, intron 4 of 8) MIR3|SINE|MIR 125435 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 2.602 nan 1.288 0.573 1.086 0.741 1.385 0.145 0.125 1.149 0.494 0.708 2.680 0.030 0.105 0.989 2.264 0.590 0.637 2.118 nan 0.554 0.213 0.127 0.125 0.635 0.880 1.543 nan 3.878 3.974 1.733 3.804 3.984 3.663 3.361 6.087 1.382 0.966 1.405 0.776 1.207 0.660 1.385 0.708 0.479 0.098 2.825 3.170 2290 chr7 99693552 99700858 + 0 NA intron (NM_005916, intron 3 of 14) intron (NM_005916, intron 3 of 14) 1198 NM_182776 4176 Hs.438720 NM_005916 ENSG00000166508 MCM7 CDC47|MCM2|P1.1-MCM3|P1CDC47|P85MCM|PNAS146|PPP1R104 minichromosome maintenance complex component 7 protein-coding nan 2.085 nan 5.637 6.214 3.520 3.550 2.055 0.285 3.524 1.251 4.498 8.315 6.072 0.226 7.250 6.225 5.183 7.390 9.394 10.608 5.826 4.648 10.657 10.662 2.606 3.923 6.287 9.845 6.458 6.999 5.242 7.557 6.129 7.177 7.330 nan 4.363 2.088 3.726 4.677 1.722 3.022 3.550 4.498 1.174 1.789 2.302 2.029 2159 chr6 99271468 99296397 + 0 NA exon (NM_005604, exon 1 of 1) exon (NM_005604, exon 1 of 1) 1352 NM_005604 5454 Hs.182505 NM_005604 ENSG00000184486 POU3F2 BRN2|N-Oct3|OCT7|OTF-7|OTF7|POUF3|brn-2|oct-7 POU class 3 homeobox 2 protein-coding nan 1.873 nan 3.327 4.449 2.367 1.293 0.123 0.058 1.129 0.786 1.723 6.888 0.139 0.099 1.413 2.094 0.997 1.201 2.139 1.412 nan 1.149 0.939 0.932 1.166 nan 1.494 2.717 nan 2.461 0.909 2.435 0.929 0.603 0.673 1.081 1.120 0.706 0.405 2.364 0.149 0.248 1.293 1.723 0.019 1.093 0.944 0.486 1436 chr2 47399313 47405278 + 0 NA promoter-TSS (NM_001305626) promoter-TSS (NM_001305626) -949 NM_001305626 805 Hs.468442 NM_001743 ENSG00000143933 CALM2 CAMII|LQT15|PHKD|PHKD2|caM calmodulin 2 protein-coding 6.455 nan 5.298 5.073 5.831 2.899 4.469 2.686 0.188 3.296 1.383 7.042 12.797 4.841 0.124 7.672 8.122 7.180 9.658 nan 9.979 9.195 5.019 15.093 15.458 4.764 5.596 8.644 11.638 10.152 10.697 3.706 8.070 4.889 4.726 10.017 nan nan 2.479 5.003 8.717 0.944 3.029 4.469 7.042 1.373 2.875 2.705 3.110 1093 chr17 48932685 48946796 + 0 NA 3' UTR (NM_001243885, exon 2 of 2) 3' UTR (NM_001243885, exon 2 of 2) 3975 NM_005749 10140 Hs.703321 NM_005749 ENSG00000141232 TOB1 APRO5|APRO6|PIG49|TOB|TROB|TROB1 transducer of ERBB2, 1 protein-coding 4.085 3.476 nan 3.197 5.251 2.860 1.922 1.768 0.296 2.150 0.947 3.217 8.157 2.822 0.176 3.822 4.731 2.549 4.228 5.144 nan 4.911 2.612 8.588 8.799 2.622 3.126 5.662 nan 5.217 4.949 3.093 5.982 4.497 4.783 3.488 4.322 1.781 0.978 2.684 3.240 1.293 2.463 1.922 3.217 0.885 2.031 2.509 1.454 1143 chr17 80737363 80771635 + 0 NA intron (NM_005993, intron 7 of 38) intron (NM_005993, intron 7 of 38) 43432 NM_024702 79755 Hs.464391 NM_024702 ENSG00000141579 ZNF750 ZFP750 zinc finger protein 750 protein-coding 0.810 0.730 0.846 0.317 0.562 0.232 0.531 0.157 0.127 0.397 0.284 5.393 4.718 0.133 0.090 0.530 nan 0.438 0.707 nan 2.347 0.451 0.180 0.490 0.492 0.395 0.700 3.849 5.524 0.145 0.127 0.376 0.491 0.138 0.198 0.222 0.480 1.212 0.599 1.840 3.239 0.036 0.095 0.531 5.393 0.073 0.118 0.089 0.091 1328 chr19 42771406 42791763 + 0 NA intron (NM_001304815, intron 2 of 20) AluSx|SINE|Alu -7233 NM_015125 23152 Hs.388236 NM_015125 ENSG00000079432 CIC - capicua transcriptional repressor protein-coding 4.739 2.446 3.297 2.272 3.196 1.771 4.019 1.405 0.238 1.877 0.971 3.862 5.687 4.187 0.144 2.470 3.576 2.902 4.605 4.918 4.637 3.873 2.286 5.662 6.000 4.016 5.307 2.842 4.363 3.974 3.454 2.537 3.925 5.700 5.947 2.869 3.794 2.862 1.290 3.714 3.260 2.444 1.226 4.019 3.862 1.947 1.679 2.432 1.148 2501 chr9 35070374 35082068 + 0 NA intron (NM_004629, intron 8 of 13) intron (NM_004629, intron 8 of 13) -3482 NM_007126 7415 Hs.529782 NM_007126 ENSG00000165280 VCP ALS14|CMT2Y|HEL-220|HEL-S-70|IBMPFD|IBMPFD1|TERA|p97 valosin containing protein protein-coding 2.848 nan 3.132 2.790 3.117 1.632 1.967 1.585 0.260 1.738 0.758 3.264 6.240 1.797 0.110 2.130 2.061 4.552 5.912 5.107 4.726 7.431 3.369 4.493 4.770 3.262 4.383 3.633 6.191 5.001 5.600 1.917 2.982 3.482 4.148 4.298 3.542 3.548 1.881 1.846 1.805 0.645 1.706 1.967 3.264 0.290 1.448 0.669 1.296 599 chr12 32831188 32869582 + 0 NA intron (NM_001330380, intron 1 of 18) intron (NM_001330380, intron 1 of 18) 18251 NM_001278464 10059 Hs.556296 NM_005690 ENSG00000087470 DNM1L DLP1|DRP1|DVLP|DYMPLE|EMPF|EMPF1|HDYNIV dynamin 1 like protein-coding 1.391 nan 1.109 1.158 0.624 0.288 0.421 0.139 0.113 0.384 0.374 0.545 0.902 0.336 0.146 0.915 0.938 0.774 0.933 1.332 1.360 1.316 0.523 1.493 1.522 0.941 1.222 0.685 0.850 0.689 0.603 0.435 0.751 0.272 0.288 1.664 4.732 0.833 0.527 0.195 0.411 0.047 0.493 0.421 0.545 0.170 0.299 0.201 1.533 1144 chr17 80784644 80852436 + 0 NA intron (NM_005993, intron 13 of 38) intron (NM_005993, intron 13 of 38) -20609 NM_024702 79755 Hs.464391 NM_024702 ENSG00000141579 ZNF750 ZFP750 zinc finger protein 750 protein-coding 1.015 1.115 1.278 0.592 0.556 0.248 0.819 0.205 0.136 0.533 0.271 2.151 6.255 0.113 0.104 0.962 nan 0.604 1.274 nan 1.422 1.521 0.377 0.565 0.558 0.488 0.789 3.267 4.039 0.231 0.246 0.684 1.041 0.769 0.786 0.367 0.553 1.374 0.831 1.971 8.277 0.138 0.587 0.819 2.151 0.279 0.691 0.433 0.130 897 chr15 80675098 80712749 + 0 NA Intergenic Intergenic -2769 NM_014862 9915 Hs.459070 NM_014862 ENSG00000172379 ARNT2 WEDAS|bHLHe1 aryl hydrocarbon receptor nuclear translocator 2 protein-coding 0.908 nan 0.677 0.227 0.584 0.414 0.349 0.107 0.086 0.267 0.209 0.699 0.999 0.324 0.085 3.323 3.200 6.220 4.477 0.955 0.916 1.023 0.440 6.534 6.793 0.650 1.010 0.793 1.447 1.136 0.969 0.875 1.262 0.152 0.140 0.216 0.223 0.552 0.398 0.177 0.190 0.023 0.198 0.349 0.699 0.134 0.313 0.420 0.102 1852 chr3 177305528 177341565 + 0 NA intron (NR_047568, intron 2 of 3) intron (NR_047568, intron 2 of 3) 163837 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 1.369 2.841 1.612 1.994 3.445 1.731 0.408 2.897 0.414 1.531 0.625 0.966 1.980 0.066 0.131 0.958 1.332 2.084 6.726 1.291 1.315 5.588 3.285 0.337 0.340 0.616 1.046 3.440 1.989 0.731 0.338 0.448 0.791 0.878 1.111 0.472 1.083 2.060 1.044 0.651 0.278 0.133 0.186 0.408 0.966 0.087 1.544 0.481 0.235 2455 chr8 145548947 145562876 + 0 NA 3' UTR (NM_031309, exon 2 of 2) 3' UTR (NM_031309, exon 2 of 2) 4032 NM_031309 83482 Hs.31746 NM_031309 ENSG00000261678 SCRT1 SCRT|ZNF898 scratch family transcriptional repressor 1 protein-coding 3.188 1.509 nan 2.491 2.111 1.251 1.784 0.362 0.116 0.394 0.191 2.558 7.498 0.870 0.047 1.757 3.001 0.876 1.281 nan 4.283 nan 0.893 1.351 1.262 1.268 1.883 1.062 1.930 2.778 2.851 1.568 3.079 1.309 1.070 1.915 2.622 0.832 0.490 2.972 3.283 0.240 0.763 1.784 2.558 0.871 2.203 1.132 0.831 2127 chr6 41680710 41704054 + 0 NA intron (NM_001167827, intron 1 of 8) intron (NM_001167827, intron 1 of 8) 9757 NM_001271945 7942 Hs.485360 NM_007162 ENSG00000112561 TFEB ALPHATFEB|BHLHE35|TCFEB transcription factor EB protein-coding 1.660 2.115 1.147 3.334 0.845 0.412 0.592 1.076 0.132 2.478 1.201 1.747 2.130 0.888 0.104 0.750 1.692 0.480 0.884 1.305 1.575 5.971 2.434 0.639 0.646 0.965 1.428 4.231 nan 0.760 0.815 0.466 0.704 2.155 1.749 0.427 0.778 2.940 1.326 0.657 1.084 0.652 0.265 0.592 1.747 0.175 1.007 0.304 0.148 2184 chr6 136644652 136650174 + 0 NA Intergenic Intergenic -36424 NM_001301038 9774 Hs.486542 NM_014739 ENSG00000029363 BCLAF1 BTF|bK211L9.1 BCL2 associated transcription factor 1 protein-coding 1.918 1.308 1.365 1.257 0.798 0.292 0.704 0.028 0.679 0.214 1.061 1.642 0.019 0.071 0.623 1.260 0.377 0.588 1.013 0.974 nan 1.682 0.436 0.389 0.789 0.999 1.653 2.244 1.054 0.752 0.515 0.921 0.692 1.154 2.515 nan 1.291 0.851 0.322 0.225 0.154 0.185 0.704 1.061 0.298 5.198 0.342 0.987 1712 chr22 29187491 29198817 + 0 NA exon (NM_005080, exon 3 of 5) exon (NM_005080, exon 3 of 5) 3406 NM_005080 7494 Hs.437638 NM_005080 ENSG00000100219 XBP1 TREB-5|TREB5|XBP-1|XBP2 X-box binding protein 1 protein-coding nan 1.945 2.369 1.949 4.638 2.483 1.396 2.508 0.257 1.521 0.798 2.099 3.624 2.048 0.109 1.621 2.115 2.069 nan 1.819 1.430 4.419 2.590 10.402 10.545 3.003 nan 5.526 7.266 1.896 2.592 2.287 3.292 5.377 6.847 4.203 nan 4.043 1.931 1.459 1.792 0.792 1.195 1.396 2.099 0.506 2.860 0.810 0.993 1139 chr17 79668167 79681719 + 0 NA TTS (NM_002949) TTS (NM_002949) -4323 NM_012140 1468 Hs.548187 NM_012140 ENSG00000183048 SLC25A10 DIC solute carrier family 25 member 10 protein-coding 3.622 3.401 3.778 3.160 3.935 1.919 3.231 1.465 0.378 2.459 1.417 2.256 5.060 2.190 0.136 5.617 6.278 4.207 5.579 3.999 3.675 6.360 1.985 5.046 4.972 nan 3.853 4.032 5.782 5.355 6.601 2.627 5.175 4.308 4.036 3.808 4.516 nan 1.261 1.052 2.053 1.353 1.237 3.231 2.256 0.753 3.078 0.926 1.480 1987 chr5 70736842 70754536 + 0 NA Intergenic Intergenic -3106 NR_134269 102724392 Hs.625874 NR_134268 LOC102724392 - uncharacterized LOC102724392 ncRNA 1.335 nan 1.089 0.545 0.957 0.454 0.682 0.362 0.092 2.174 1.552 0.535 1.555 0.618 0.153 0.625 0.721 1.000 1.318 1.173 1.078 nan 1.772 0.948 0.920 3.298 nan 1.020 1.466 2.155 2.003 0.489 0.812 9.173 8.255 0.858 0.967 3.185 1.931 0.178 0.669 2.369 0.340 0.682 0.535 0.110 1.739 0.316 0.237 995 chr16 89869351 89897109 + 0 NA promoter-TSS (NM_001286167) promoter-TSS (NM_001286167) -165 NM_000135 2175 Hs.744083 NM_000135 ENSG00000187741 FANCA FA|FA-H|FA1|FAA|FACA|FAH|FANCH Fanconi anemia complementation group A protein-coding nan 1.634 3.023 1.998 1.637 0.885 1.712 0.486 0.214 0.901 0.587 3.819 3.213 0.812 0.106 1.670 2.084 0.830 1.274 2.367 2.416 2.299 0.751 1.421 1.414 0.869 1.257 2.171 3.352 1.598 1.422 1.001 1.902 1.247 1.408 2.244 3.923 1.590 0.830 1.445 1.740 0.418 0.511 1.712 3.819 0.344 1.144 0.876 1.407 2032 chr5 151149328 151154063 + 0 NA promoter-TSS (NR_132346) promoter-TSS (NR_132346) 42 NR_132345 100652758 Hs.587054 NM_001278082 LOC100652758 - uncharacterized LOC100652758 ncRNA 6.417 nan 4.533 4.323 7.552 3.389 2.808 2.779 0.340 1.190 0.808 5.102 11.819 5.866 0.184 5.252 5.248 9.215 12.489 8.954 7.375 6.823 2.969 9.045 9.186 4.626 5.839 10.740 16.126 8.412 10.452 5.950 11.209 8.410 8.505 7.763 5.981 2.360 1.153 3.900 5.354 2.056 4.410 2.808 5.102 1.188 4.237 2.739 2.059 2206 chr6 170856335 170865638 + 0 NA intron (NM_002793, intron 1 of 5) intron (NM_002793, intron 1 of 5) 1431 NM_002793 5689 Hs.352768 NM_002793 ENSG00000008018 PSMB1 HC5|PMSB1|PSC5 proteasome subunit beta 1 protein-coding nan 1.895 nan 3.546 2.720 1.173 2.449 1.396 0.087 0.995 0.433 2.314 4.707 1.914 0.103 3.453 2.728 4.499 5.930 nan 4.231 9.088 4.380 8.716 8.754 1.585 2.146 nan 4.702 5.968 5.556 1.581 2.860 3.345 5.515 3.923 4.099 1.794 0.682 1.491 2.615 0.378 0.845 2.449 2.314 0.670 1.059 0.752 1.060 608 chr12 53684354 53695063 + 0 NA exon (NM_002624, exon 2 of 6) exon (NM_002624, exon 2 of 6) 473 NM_145897 5204 Hs.655327 NM_002624 ENSG00000123349 PFDN5 MM-1|MM1|PFD5 prefoldin subunit 5 protein-coding nan 1.769 1.164 2.656 1.703 1.150 1.264 0.613 0.119 2.239 1.204 2.963 4.154 1.331 0.122 nan 3.218 1.605 2.832 4.112 nan 4.910 1.501 2.370 2.857 1.630 nan 5.289 nan 1.758 1.402 1.387 1.913 1.512 1.782 1.725 2.152 4.466 2.405 1.733 2.867 0.259 0.443 1.264 2.963 0.498 1.409 0.424 0.404 2076 chr6 18260459 18280603 + 0 NA Intergenic Intergenic -5732 NM_001134709 7913 Hs.484813 NM_003472 ENSG00000124795 DEK D6S231E DEK proto-oncogene protein-coding 2.848 nan 2.103 2.104 2.260 0.945 2.273 1.693 0.359 1.006 0.557 2.713 4.808 1.105 0.113 2.049 1.970 2.603 4.406 3.446 3.382 2.723 1.497 3.310 3.496 2.254 2.794 2.385 3.455 3.303 3.520 1.513 2.554 2.684 2.804 2.713 2.917 1.681 0.949 2.308 1.218 0.824 1.236 2.273 2.713 0.310 1.062 0.883 1.173 414 chr11 12843540 12870266 + 0 NA intron (NM_021961, intron 3 of 12) (TTGG)n|Simple_repeat|Simple_repeat 154192 NR_038904 100506305 Hs.153408 NR_038904 ENSG00000251381 LINC00958 - long intergenic non-protein coding RNA 958 ncRNA 1.318 nan 1.884 1.996 2.745 1.440 2.538 1.753 0.181 1.678 0.944 3.382 4.524 0.248 0.110 nan 3.873 2.078 2.459 4.023 4.210 4.736 1.627 1.069 1.159 2.219 nan 2.577 3.552 1.077 1.018 1.499 3.037 4.068 4.579 1.117 3.896 2.814 nan 3.901 4.138 1.538 0.499 2.538 3.382 0.230 0.381 3.159 0.853 1984 chr5 69195370 69201131 + 0 NA Intergenic Intergenic -122822 NM_021967 8293 Hs.726820 NM_021967 ENSG00000172058 SERF1A 4F5|FAM2A|H4F5|SERF1|SMAM1 small EDRK-rich factor 1A protein-coding 3.624 8.398 2.891 0.979 0.518 0.306 0.617 0.310 0.306 0.807 0.386 0.410 0.430 0.130 0.103 0.526 0.784 1.011 1.298 0.949 0.813 4.379 1.474 0.985 0.818 1.290 2.109 1.075 2.108 1.842 1.559 0.291 0.469 4.354 4.412 0.704 1.024 1.530 1.047 0.385 0.453 2.111 0.454 0.617 0.410 0.323 0.195 0.066 0.277 847 chr14 105876651 105889365 + 0 NA TTS (NR_125384) TTS (NR_125384) 3068 NR_125385 100507437 Hs.676548 NR_125384 ENSG00000251602 LOC100507437 - uncharacterized LOC100507437 ncRNA 4.282 1.620 3.202 2.114 1.949 0.918 3.138 1.069 0.257 1.220 0.517 3.193 2.871 1.593 0.117 1.957 2.542 1.578 2.200 5.373 5.231 5.910 1.751 1.831 1.713 1.750 2.540 2.939 4.588 4.876 5.243 1.442 2.532 1.703 1.770 1.330 1.724 0.690 0.351 2.202 1.493 0.422 1.207 3.138 3.193 0.834 0.974 0.621 0.790 1311 chr19 39887924 39906343 + 0 NA promoter-TSS (NM_003407) promoter-TSS (NM_003407) -354 NM_003407 7538 Hs.534052 NM_003407 ENSG00000128016 ZFP36 G0S24|GOS24|NUP475|RNF162A|TIS11|TTP|zfp-36 ZFP36 ring finger protein protein-coding 3.022 3.311 3.816 5.695 3.512 1.891 2.698 2.522 0.375 1.085 0.496 3.657 12.228 5.383 0.161 2.141 3.150 2.883 4.506 4.467 3.829 5.362 2.856 9.301 9.601 1.894 2.473 5.354 8.615 nan 1.990 2.018 2.954 2.946 3.037 1.984 4.013 2.648 1.283 3.366 2.419 0.658 1.355 2.698 3.657 1.325 3.011 1.402 1.736 530 chr11 126838910 126861034 + 0 NA intron (NM_032531, intron 1 of 16) L2c|LINE|L2 8466 NR_036126 100422918 NR_036126 ENSG00000266215 MIR3167 - microRNA 3167 ncRNA 0.588 1.681 0.631 1.661 0.713 0.391 0.551 0.044 0.029 0.603 0.339 2.455 2.150 0.045 0.108 0.450 0.439 0.403 0.350 3.660 4.891 2.577 0.838 0.091 0.099 0.194 0.324 2.532 2.703 0.372 0.213 0.457 0.573 0.625 0.669 0.201 nan 2.414 1.196 1.414 0.684 0.176 0.089 0.551 2.455 0.044 0.018 0.093 0.095 1898 chr4 67947622 67952430 + 0 NA Intergenic Intergenic 337692 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA nan nan 0.518 0.297 0.293 0.267 0.481 0.063 0.133 0.170 0.144 0.129 0.571 0.044 0.087 1.821 1.295 11.856 7.751 0.261 0.266 0.209 0.113 1.166 1.171 0.808 1.055 0.536 0.591 0.337 0.107 0.363 1.401 0.077 0.063 0.205 0.344 0.377 0.339 0.023 0.111 0.050 0.481 0.129 0.041 0.253 0.025 1872 chr3 189428521 189443463 + 0 NA intron (NM_001114978, intron 1 of 12) intron (NM_001114978, intron 1 of 12) -71457 NM_001114982 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 1.496 1.338 1.039 0.306 0.816 0.283 0.172 3.390 0.231 0.247 0.214 0.132 1.117 0.036 0.085 0.387 0.176 0.309 0.941 0.386 0.475 6.978 2.097 0.342 0.343 0.244 0.355 1.006 1.727 0.795 0.485 0.115 0.181 1.140 1.248 1.174 3.217 1.422 0.650 0.056 0.092 0.223 0.101 0.172 0.132 0.072 0.115 0.020 0.912 644 chr12 89738122 89787906 + 0 NA Intergenic Intergenic -16378 NM_022652 1848 Hs.298654 NM_001946 ENSG00000139318 DUSP6 HH19|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 1.541 2.234 1.385 0.914 0.680 0.372 0.872 2.394 0.227 0.364 0.230 0.428 3.479 5.222 0.186 1.075 1.018 1.328 1.700 1.075 0.824 2.877 0.823 0.911 0.862 0.859 1.391 1.945 1.935 0.491 0.271 0.267 0.396 0.518 0.567 0.207 0.308 1.659 1.321 0.726 0.203 0.093 0.038 0.872 0.428 0.050 1.337 0.051 0.102 1071 chr17 40393010 40401767 + 0 NA intron (NM_012448, intron 1 of 18) AluSc|SINE|Alu 31036 NM_012448 6777 Hs.595276 NM_012448 ENSG00000173757 STAT5B STAT5 signal transducer and activator of transcription 5B protein-coding 1.281 1.296 nan 0.200 0.598 0.237 0.359 0.190 0.177 0.611 0.337 0.254 0.487 0.091 0.086 0.347 0.436 0.262 0.359 0.381 nan 0.445 0.185 0.452 0.651 1.215 1.750 0.735 nan 7.342 7.487 0.196 0.348 0.202 0.322 2.325 4.646 1.250 0.755 0.168 0.485 0.077 0.036 0.359 0.254 0.944 0.987 0.079 3.104 1497 chr2 175618396 175637833 + 0 NA intron (NM_001039523, intron 1 of 9) intron (NM_001039523, intron 1 of 9) 1086 NM_001039523 1134 Hs.434479 NM_000079 ENSG00000138435 CHRNA1 ACHRA|ACHRD|CHRNA|CMS1A|CMS1B|CMS2A|FCCMS|SCCMS cholinergic receptor nicotinic alpha 1 subunit protein-coding 1.565 0.868 2.770 0.140 0.326 0.144 0.164 0.207 0.041 0.082 0.150 0.475 0.505 0.050 0.058 0.420 0.398 0.226 0.295 1.155 1.235 0.683 0.205 0.290 0.359 0.952 1.208 1.461 1.969 2.760 2.449 0.163 0.233 0.124 0.127 2.254 6.671 0.518 0.422 0.245 0.174 0.020 0.874 0.164 0.475 0.257 0.152 0.045 1.849 1831 chr3 166794650 166819181 + 0 NA Intergenic Intergenic 190444 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 1.232 1.197 1.002 0.205 0.282 0.170 0.263 0.133 0.138 0.210 0.184 0.074 0.212 0.035 0.085 0.347 0.209 0.180 0.326 0.467 0.537 5.060 1.701 0.221 0.215 0.817 1.107 nan 0.350 nan 0.526 0.113 0.168 0.471 0.719 0.698 1.638 0.588 0.464 0.025 0.076 0.097 0.068 0.263 0.074 0.158 0.029 0.033 0.378 526 chr11 120104111 120188472 + 0 NA intron (NM_014352, intron 3 of 12) intron (NM_014352, intron 3 of 12) -9650 NR_038829 649133 Hs.568902 NR_038829 ENSG00000259541 LOC649133 - uncharacterized LOC649133 ncRNA 0.495 0.670 0.477 0.076 0.266 0.138 0.380 0.037 0.046 0.076 0.131 0.088 1.070 0.062 0.095 3.779 5.130 4.918 4.114 0.355 0.455 0.294 0.150 5.204 5.202 0.194 0.423 0.200 0.209 0.393 0.241 4.032 7.728 0.115 0.134 0.159 nan 0.584 0.570 0.095 0.113 0.026 0.039 0.380 0.088 0.043 0.031 5.561 0.058 1489 chr2 160567431 160570521 + 0 NA promoter-TSS (NR_110586) promoter-TSS (NR_110586) 8 NM_022826 64844 Hs.529272 NM_022826 ENSG00000136536 MARCH7 AXO|AXOT|MARCH-VII|RNF177 membrane associated ring-CH-type finger 7 protein-coding 7.716 4.889 7.405 6.563 10.008 4.824 5.658 4.311 0.258 2.827 2.098 7.820 11.925 5.063 0.171 6.061 6.691 13.095 18.197 10.971 10.313 7.115 3.397 20.826 22.004 6.740 8.674 8.529 14.117 8.817 9.497 4.583 10.223 5.042 5.476 12.047 10.661 3.397 1.980 6.960 4.734 1.104 3.171 5.658 7.820 1.691 1.689 3.163 2.973 112 chr1 48142262 48157194 + 0 NA Intergenic L3|LINE|CR1 -246739 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA nan 0.729 nan 0.064 0.384 0.198 0.464 0.096 0.141 0.095 0.178 0.064 0.413 5.680 0.161 0.328 0.315 0.187 0.306 0.531 0.646 0.116 0.052 0.314 0.292 0.159 nan nan 0.576 0.329 0.169 0.232 nan 0.137 0.132 0.222 0.329 0.632 0.603 0.157 0.189 0.024 0.084 0.464 0.064 0.058 0.020 0.039 0.034 1526 chr2 208193488 208205329 + 0 NA Intergenic Intergenic -65260 NR_031633 100302130 NR_031633 ENSG00000221628 MIR1302-4 MIRN1302-4|hsa-mir-1302-4 microRNA 1302-4 ncRNA 1.012 nan 1.216 0.551 3.412 1.590 1.144 0.990 0.122 0.144 0.097 0.314 4.855 0.294 0.074 0.466 0.315 0.352 0.533 0.249 0.278 0.390 0.136 0.637 0.709 2.179 2.308 0.537 0.508 0.492 0.286 0.181 0.273 3.852 5.836 0.455 1.012 0.355 0.203 1.152 0.701 0.816 0.086 1.144 0.314 0.254 0.902 0.092 0.157 1255 chr19 7174465 7184158 + 0 NA intron (NM_001079817, intron 3 of 20) MER21C|LTR|ERVL 109840 NM_001044388 79230 Hs.591380 NM_024341 ENSG00000130544 ZNF557 - zinc finger protein 557 protein-coding 0.932 1.625 1.925 0.745 0.758 0.230 0.316 0.078 0.150 0.487 0.505 5.345 0.998 0.088 0.083 0.369 0.349 0.270 0.518 4.940 6.903 1.265 0.180 0.106 0.120 0.292 0.612 6.077 nan 1.013 0.612 0.147 0.139 0.134 0.157 0.402 1.254 3.426 1.355 0.882 0.377 0.050 0.229 0.316 5.345 0.071 0.198 0.020 0.443 27 chr1 8619350 8633406 + 0 NA intron (NM_012102, intron 5 of 23) intron (NM_012102, intron 5 of 23) -71405 NR_132752 106632271 NR_132752 SNORD128 ZL43 small nucleolar RNA, C/D box 128 snoRNA 1.389 nan 1.426 0.583 0.449 0.195 0.291 0.482 0.069 0.323 0.301 0.187 0.587 0.510 0.169 0.403 0.401 0.424 1.073 0.987 1.291 1.929 0.757 0.870 0.844 1.664 nan nan 4.651 nan 0.966 0.390 0.560 0.095 0.215 2.776 6.545 1.264 0.846 0.096 0.189 0.027 0.273 0.291 0.187 0.103 0.145 0.056 1.355 2483 chr9 14173191 14187072 + 0 NA intron (NM_001190737, intron 2 of 10) intron (NM_001190737, intron 2 of 10) 670 NM_001282787 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding nan nan 1.311 0.646 0.860 0.507 0.193 0.383 0.081 0.802 0.605 0.383 1.413 0.102 0.115 0.245 0.174 3.351 7.654 0.465 0.518 2.316 0.687 0.177 0.163 7.595 9.337 0.753 0.817 0.262 0.116 0.257 0.328 1.864 2.912 0.232 0.534 2.678 1.296 0.534 0.084 0.522 0.097 0.193 0.383 0.034 0.051 0.043 0.035 1487 chr2 160368432 160375723 + 0 NA intron (NM_001329857, intron 2 of 36) intron (NM_001329857, intron 2 of 36) -99728 NR_110588 643072 Hs.632541 NR_110587 LOC643072 - uncharacterized LOC643072 ncRNA 1.641 2.310 nan 2.480 7.683 3.772 0.621 0.812 0.068 2.238 1.528 0.943 1.446 0.090 0.055 1.011 1.406 1.823 2.691 2.070 2.940 3.667 2.779 1.729 1.794 1.231 1.276 3.142 4.934 2.771 2.005 1.305 1.653 1.369 2.894 2.871 6.165 1.973 0.973 1.285 0.755 0.079 0.098 0.621 0.943 0.092 0.319 0.870 1.586 1742 chr22 46493274 46506240 + 0 NA intron (NR_027033, intron 4 of 5) intron (NR_027033, intron 4 of 5) -8872 NR_029478 406883 NR_029478 ENSG00000197182 MIRLET7A3 LET7A3|MIRNLET7A3|let-7a-3 microRNA let-7a-3 ncRNA 1.511 3.107 nan 1.182 2.968 1.357 0.793 0.606 0.111 1.322 0.682 0.890 1.737 0.475 0.085 2.258 3.463 0.715 1.929 7.157 6.605 0.637 0.196 0.849 0.722 1.023 1.623 1.026 1.344 1.574 1.238 0.550 0.765 1.286 1.281 0.114 0.148 2.570 1.390 1.090 0.314 0.440 0.911 0.793 0.890 0.506 1.559 0.244 0.019 1228 chr18 73915375 73933213 + 0 NA Intergenic Intergenic 89341 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA nan nan 0.689 3.478 5.516 2.750 1.405 0.063 0.063 3.155 2.026 6.275 1.532 0.030 0.086 0.572 0.767 0.686 1.028 4.458 nan 15.410 6.388 0.308 0.361 0.083 0.147 5.629 nan 0.501 0.314 0.173 0.238 4.316 4.130 0.183 0.311 3.002 1.473 0.022 0.535 0.656 0.476 1.405 6.275 0.011 0.103 0.033 0.069 1425 chr2 28611955 28621228 + 0 NA exon (NM_005253, exon 1 of 4) exon (NM_005253, exon 1 of 4) 812 NM_005253 2355 Hs.220971 NM_005253 ENSG00000075426 FOSL2 FRA2 FOS like 2, AP-1 transcription factor subunit protein-coding 3.048 2.283 3.259 4.655 4.211 2.047 3.642 4.792 0.320 1.703 0.792 2.142 14.570 8.455 0.187 1.654 2.721 3.181 8.427 3.361 2.944 4.386 1.587 7.809 7.891 2.193 3.084 4.049 nan 4.327 5.719 0.753 1.754 2.702 2.109 0.319 0.637 1.655 0.860 4.068 2.200 0.492 4.293 3.642 2.142 2.192 3.770 0.313 0.533 2014 chr5 126110465 126116807 + 0 NA intron (NR_134488, intron 1 of 11) CpG 791 NM_001198557 4001 Hs.89497 NM_005573 ENSG00000113368 LMNB1 ADLD|LMN|LMN2|LMNB lamin B1 protein-coding nan 6.246 4.323 5.125 9.981 5.479 3.542 2.227 0.499 2.649 1.310 4.239 12.232 9.233 0.255 4.057 4.824 7.437 nan 12.153 10.667 6.926 3.032 15.290 15.942 5.942 7.208 7.189 11.937 10.599 13.697 2.590 5.252 13.916 14.410 6.563 6.253 2.624 1.588 5.074 8.602 4.256 4.968 3.542 4.239 1.376 4.212 2.443 3.373 1819 chr3 141090775 141134139 + 0 NA intron (NM_001080412, intron 5 of 7) intron (NM_001080412, intron 5 of 7) 69402 NM_001080412 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 1.901 nan nan 0.662 2.114 1.124 1.176 2.000 0.204 1.928 1.223 1.617 0.554 0.242 0.082 2.828 3.973 1.939 2.707 0.598 0.649 nan 2.837 0.630 0.575 1.081 nan 0.763 nan nan 1.250 2.160 2.780 1.677 1.760 1.335 3.393 2.480 1.481 0.209 1.520 0.396 0.966 1.176 1.617 0.083 0.986 1.955 0.812 2565 chr9 136496528 136533494 + 0 NA intron (NM_000787, intron 6 of 11) intron (NM_000787, intron 6 of 11) 7519 NR_102735 138948 Hs.223858 NR_002783 ENSG00000225756 DBH-AS1 NCRNA00118 DBH antisense RNA 1 ncRNA nan 0.744 3.241 2.222 0.475 0.256 0.600 0.074 0.040 0.745 0.431 1.124 1.479 0.038 0.057 0.265 0.504 0.140 0.164 4.640 4.710 nan 0.503 0.091 0.093 0.068 0.151 2.801 2.734 1.302 1.160 0.255 0.218 0.449 0.332 0.258 0.461 2.374 1.161 3.697 0.867 0.060 0.030 0.600 1.124 0.190 0.365 0.051 0.037 2141 chr6 45572239 45600802 + 0 NA Intergenic Intergenic 196206 NM_001278478 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA runt related transcription factor 2 protein-coding 1.680 0.979 0.862 0.153 0.676 0.275 0.286 1.276 0.214 0.120 0.128 0.223 0.454 0.042 0.134 1.903 1.246 3.218 7.945 0.302 0.311 0.120 0.073 1.331 1.325 0.139 0.248 0.561 nan 0.535 0.304 2.210 2.902 0.091 0.116 0.455 1.237 0.737 0.641 0.086 0.062 0.010 0.074 0.286 0.223 0.007 0.057 1.624 0.450 28 chr1 8679372 8713615 + 0 NA intron (NM_012102, intron 3 of 23) FRAM|SINE|Alu -141520 NR_132752 106632271 NR_132752 SNORD128 ZL43 small nucleolar RNA, C/D box 128 snoRNA 1.128 nan 1.728 0.631 0.744 0.388 1.155 0.331 0.117 0.352 0.368 0.353 0.689 0.329 0.124 0.345 0.418 0.868 2.356 1.742 1.974 1.030 0.434 0.785 0.720 1.243 nan nan 4.762 nan 0.579 0.323 0.411 0.466 0.837 0.786 1.730 1.325 0.692 0.335 0.878 0.137 0.886 1.155 0.353 0.167 0.089 0.081 0.383 212 chr1 156708757 156739259 + 0 NA Intergenic Intergenic -1768 NM_001319186 3068 Hs.743948 NM_004494 ENSG00000143321 HDGF HMG1L2 hepatoma-derived growth factor protein-coding nan nan 4.423 2.572 3.921 2.113 4.672 2.966 0.264 2.770 1.248 3.469 4.933 4.425 0.170 3.556 3.896 4.394 6.551 6.638 nan 4.527 1.957 3.246 3.216 3.296 4.495 4.391 5.842 4.754 4.529 3.888 7.297 3.848 3.706 5.023 7.766 2.393 1.198 2.633 5.700 1.008 2.535 4.672 3.469 1.082 2.595 3.101 2.373 562 chr12 7124351 7127169 + 0 NA promoter-TSS (NM_005768) promoter-TSS (NM_005768) 82 NM_005768 10162 Hs.655248 NM_005768 ENSG00000111684 LPCAT3 C3F|LPCAT|LPLAT 5|LPSAT|MBOAT5|OACT5|nessy lysophosphatidylcholine acyltransferase 3 protein-coding 3.838 nan 4.068 7.753 2.495 1.287 1.412 0.826 0.057 1.664 1.560 2.658 9.059 4.127 0.084 1.344 2.361 2.398 3.952 nan 6.409 7.516 3.050 10.347 10.592 2.926 3.437 3.273 6.630 3.923 4.061 1.940 3.736 3.011 1.643 3.864 5.571 1.335 0.673 2.979 2.281 0.943 3.358 1.412 2.658 9.218 1.511 1.736 1.614 2098 chr6 30580684 30587687 + 0 NA intron (NM_002714, intron 2 of 19).5 intron (NM_002714, intron 2 of 19).5 899 NR_072994 5514 Hs.106019 NM_002714 ENSG00000204569 PPP1R10 CAT53|FB19|PNUTS|PP1R10|R111|p99 protein phosphatase 1 regulatory subunit 10 protein-coding 8.689 5.031 nan 7.917 7.588 3.872 5.788 6.363 0.302 3.878 1.956 10.180 15.693 8.201 0.269 13.387 14.252 8.933 nan nan 15.546 12.161 9.474 23.102 25.032 8.156 10.334 13.017 17.383 14.793 15.421 8.352 10.822 10.925 11.879 12.828 10.986 5.933 2.734 6.702 5.128 1.800 4.609 5.788 10.180 1.675 2.280 2.959 3.466 1918 chr4 111943524 111952518 + 0 NA Intergenic THE1D|LTR|ERVL-MaLR -384742 NM_153426 5308 Hs.643588 NM_000325 ENSG00000164093 PITX2 ARP1|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS paired like homeodomain 2 protein-coding 0.647 0.652 0.517 0.079 0.233 0.090 0.014 0.102 0.090 0.030 0.062 0.063 0.226 0.023 0.126 0.762 0.352 9.372 0.908 0.119 0.176 0.079 0.041 0.473 0.501 0.250 0.276 0.238 0.255 0.193 0.043 0.194 0.360 0.032 0.095 0.388 0.751 0.113 0.206 0.006 0.030 0.008 0.014 0.063 0.033 0.071 0.072 1313 chr19 39968497 39976362 + 0 NA intron (NM_001001563, intron 1 of 10) intron (NM_001001563, intron 1 of 10) 1377 NM_001329559 92609 Hs.590956 NM_001001563 ENSG00000105197 TIMM50 TIM50|TIM50L translocase of inner mitochondrial membrane 50 protein-coding 3.116 2.598 3.687 4.146 1.530 0.989 1.528 0.651 0.102 0.839 0.406 1.581 5.916 1.405 0.141 2.018 1.792 2.679 3.730 2.949 3.327 3.729 1.550 6.508 6.987 1.766 2.892 3.095 4.308 nan 7.702 1.943 2.861 1.676 2.349 5.210 11.229 2.252 1.497 1.625 3.072 0.301 0.573 1.528 1.581 0.902 1.394 0.598 4.689 1905 chr4 77635865 77660019 + 0 NA intron (NM_020859, intron 3 of 10) intron (NM_020859, intron 3 of 10) 151238 NR_039655 100616254 NR_039655 ENSG00000283682 MIR548AH - microRNA 548ah ncRNA 0.696 0.608 0.782 0.283 0.443 0.259 0.279 0.450 0.093 0.162 0.113 0.288 0.481 0.333 0.073 0.436 0.474 1.363 4.650 0.578 0.680 1.227 0.387 0.332 0.371 0.219 0.346 0.929 0.873 0.350 0.169 0.224 0.323 0.171 0.158 0.165 0.310 0.684 0.493 0.037 0.177 0.012 0.065 0.279 0.288 0.004 0.059 0.090 0.093 586 chr12 24088180 24105906 + 0 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) 5594 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box 5 protein-coding nan nan nan 0.555 0.685 0.446 0.534 0.055 0.063 0.619 0.503 1.443 0.718 0.717 0.124 0.195 0.248 0.271 0.340 2.397 2.633 2.585 0.793 0.396 0.421 5.931 7.045 0.505 0.497 7.261 8.071 0.264 0.333 1.148 1.040 0.507 1.207 0.948 0.627 0.015 0.059 0.327 0.093 0.534 1.443 0.224 0.333 0.100 0.471 2474 chr9 3872529 4001246 + 0 NA intron (NM_001042413, intron 5 of 10) intron (NM_001042413, intron 5 of 10) 38241 NR_026663 84850 Hs.676113 NM_032764 ENSG00000237009 GLIS3-AS1 C9orf70 GLIS3 antisense RNA 1 ncRNA 0.820 1.910 0.742 0.229 0.404 0.180 0.293 0.392 0.095 0.281 0.178 0.198 0.702 0.113 0.084 0.341 0.361 7.367 12.743 0.462 0.556 0.168 0.111 0.266 0.277 1.070 1.658 0.549 0.754 0.841 0.646 0.376 0.684 0.578 0.534 0.248 nan 1.313 1.082 0.229 0.279 0.126 0.119 0.293 0.198 0.182 0.171 0.262 0.083 1956 chr5 33439250 33443892 + 0 NA intron (NR_047678, intron 1 of 17) MIR3|SINE|MIR 689 NM_001258438 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 4.206 3.509 9.056 11.903 3.323 1.764 3.289 7.581 0.450 5.172 2.243 5.631 11.641 5.290 0.204 5.542 6.441 7.747 10.123 7.335 6.366 8.197 2.984 16.311 17.511 7.397 9.780 9.241 13.051 12.203 13.390 4.735 9.620 7.885 7.431 3.938 5.772 5.058 2.750 2.610 3.955 1.249 2.558 3.289 5.631 1.566 3.715 2.991 1.890 1645 chr20 58508818 58524946 + 0 NA intron (NM_001190827, intron 1 of 3) intron (NM_001190827, intron 1 of 3) 1438 NM_022106 63939 Hs.54973 NM_022106 ENSG00000196227 FAM217B C20orf177|dJ551D2.5 family with sequence similarity 217 member B protein-coding 2.209 2.803 1.176 1.595 1.543 0.674 0.611 0.934 0.120 0.684 0.377 1.448 1.759 1.840 0.145 4.721 nan 3.875 3.300 3.239 3.264 3.672 1.176 1.703 1.606 2.360 2.706 2.555 3.748 2.153 1.996 1.016 1.612 0.662 0.475 0.949 1.611 2.834 1.506 1.585 1.721 0.182 0.433 0.611 1.448 0.277 1.127 0.682 0.617 1102 chr17 59429275 59445882 + 0 NA intron (NM_001330413, intron 23 of 25) AluSx|SINE|Alu 7487 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 1.135 0.836 0.835 0.238 0.467 0.241 0.771 0.307 0.194 0.197 0.158 0.223 0.344 0.052 0.159 0.461 0.409 0.277 0.559 0.454 0.457 4.572 1.292 nan 0.469 0.324 0.539 nan nan 1.218 0.974 0.309 0.346 2.637 3.416 0.584 1.133 0.807 0.488 0.054 0.795 0.613 0.904 0.771 0.223 0.345 0.117 0.107 0.195 886 chr15 67437946 67447711 + 0 NA intron (NM_001145103, intron 1 of 8) (GAAA)n|Simple_repeat|Simple_repeat 12469 NM_001145103 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 0.763 1.088 nan 0.278 0.351 0.331 0.722 1.354 0.388 0.143 0.186 0.246 0.897 0.244 0.105 0.281 0.297 7.451 13.869 0.209 0.371 nan 0.199 0.323 0.287 0.351 0.561 0.906 0.900 0.448 0.229 0.251 0.462 0.407 0.578 0.162 0.247 0.357 0.334 0.017 0.147 0.059 0.089 0.722 0.246 0.109 0.177 0.225 0.050 2096 chr6 26700797 26710664 + 0 NA Intergenic Intergenic -45750 NM_001242798 79692 Hs.126280 NM_024639 ENSG00000181315 ZNF322 HCG12|ZNF322A|ZNF388|ZNF489 zinc finger protein 322 protein-coding 1.408 1.360 nan 11.922 0.747 0.293 0.173 0.222 0.141 1.336 0.698 7.136 nan 0.078 0.252 0.717 0.281 0.282 nan 4.474 4.172 nan 0.912 0.484 0.444 0.322 0.509 15.910 13.031 0.441 0.200 0.249 0.415 0.378 0.285 0.259 0.788 3.417 1.894 0.033 1.744 0.106 0.008 0.173 7.136 0.041 4.714 0.100 0.114 1404 chr2 15727636 15751220 + 0 NA intron (NM_004939, intron 5 of 25) AluSx|SINE|Alu 7683 NM_004939 1653 Hs.440599 NM_004939 ENSG00000079785 DDX1 DBP-RB|UKVH5d DEAD-box helicase 1 protein-coding 1.334 1.034 1.415 0.772 0.489 0.333 0.600 0.357 0.163 0.509 0.338 0.549 1.654 0.649 0.130 1.227 1.243 0.917 1.282 1.483 1.459 1.248 0.579 1.046 1.065 0.974 1.235 1.489 nan 1.895 1.822 16.681 20.236 0.423 0.379 1.489 nan 0.902 0.472 0.431 0.839 0.040 0.317 0.600 0.549 0.348 0.715 8.570 0.515 261 chr1 197880872 197887244 + 0 NA intron (NM_001014434, intron 1 of 5) intron (NM_001014434, intron 1 of 5) 2423 NM_001014434 56956 Hs.442578 NM_020204 ENSG00000143355 LHX9 - LIM homeobox 9 protein-coding 3.250 nan 1.515 0.467 1.140 0.731 2.991 0.457 0.051 1.118 0.926 0.258 3.264 0.318 0.099 0.398 0.500 0.799 1.441 3.855 3.176 0.085 0.067 0.645 0.802 7.009 8.639 0.940 1.098 1.487 1.469 0.304 0.351 4.775 3.374 0.562 1.072 2.042 1.227 0.036 0.330 1.638 1.668 2.991 0.258 0.350 0.583 0.109 0.240 25 chr1 8012923 8028532 + 0 NA promoter-TSS (NM_001123377) promoter-TSS (NM_001123377) -987 NM_001123377 11315 Hs.419640 NM_007262 ENSG00000116288 PARK7 DJ-1|DJ1|HEL-S-67p Parkinsonism associated deglycase protein-coding 2.079 nan 2.267 4.053 1.252 0.715 0.599 1.574 0.137 0.679 0.486 0.705 3.621 1.384 0.116 1.502 1.802 1.170 1.929 4.830 4.698 1.709 0.808 3.151 3.284 2.672 nan nan 8.671 nan 1.513 1.244 1.815 1.019 1.065 1.918 2.821 2.242 1.338 0.873 0.933 0.225 0.470 0.599 0.705 0.550 0.850 0.784 0.886 1308 chr19 39337344 39348358 + 0 NA intron (NM_001005335, intron 1 of 12) CpG-13673 128 NM_001005335 3191 Hs.644906 NM_001533 ENSG00000104824 HNRNPL HNRPL|P/OKcl.14|hnRNP-L heterogeneous nuclear ribonucleoprotein L protein-coding 5.076 3.485 4.431 7.325 4.370 2.301 3.388 2.670 0.382 2.437 1.253 3.238 13.298 8.119 0.229 2.953 3.067 4.086 6.304 4.095 4.134 6.607 2.857 10.798 11.080 3.012 4.043 4.986 6.709 nan 4.849 2.937 5.391 3.958 4.214 4.591 7.342 3.341 1.477 2.560 3.643 1.126 1.595 3.388 3.238 0.876 3.000 2.669 3.092 262 chr1 199880768 199885514 + 0 NA Intergenic Intergenic -113589 NM_205860 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 0.620 nan 0.948 0.220 0.312 0.169 0.239 0.140 0.171 0.068 0.219 0.151 0.284 0.023 0.104 0.397 0.452 11.436 3.283 0.357 0.570 0.141 0.065 1.027 1.094 0.280 nan 0.425 0.375 0.240 0.104 0.151 0.278 0.106 0.138 0.222 0.296 0.271 0.354 0.047 0.052 0.020 0.069 0.239 0.151 0.081 0.063 0.085 2399 chr8 102289188 102314515 + 0 NA Intergenic Intergenic -79270 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACAP1 FKSG17 nascent polypeptide associated complex alpha subunit pseudogene 1 pseudo 2.034 nan nan 0.559 1.269 0.658 0.631 0.713 0.139 0.161 0.074 1.160 4.384 0.047 0.086 0.356 0.345 0.281 0.616 2.845 2.511 nan 0.624 0.521 0.585 1.427 nan 3.977 nan nan 0.986 0.326 0.354 0.464 0.545 1.130 nan 1.967 1.156 0.539 3.802 0.120 0.187 0.631 1.160 0.837 0.575 0.051 0.697 997 chr16 90054259 90067899 + 0 NA intron (NR_003228, intron 10 of 12) intron (NR_003228, intron 10 of 12) 15450 NM_024043 79007 Hs.301394 NM_024043 ENSG00000003249 DBNDD1 - dysbindin domain containing 1 protein-coding nan nan nan 0.595 0.780 0.306 1.433 0.325 0.070 0.173 0.118 0.492 0.580 0.795 0.090 nan 0.756 1.593 2.506 0.716 0.691 5.578 0.780 nan 6.791 0.464 nan 0.618 1.306 nan 0.637 0.426 0.378 1.414 6.179 2.185 1.090 nan 0.765 0.257 0.305 0.091 0.476 1.433 0.492 0.532 0.957 0.102 0.164 1464 chr2 111877340 111881893 + 0 NA intron (NM_207003, intron 1 of 4) CpG-15379 1125 NM_138623 10018 Hs.469658 NM_006538 ENSG00000153094 BCL2L11 BAM|BIM|BOD BCL2 like 11 protein-coding 6.933 nan 6.638 6.826 3.402 2.354 3.429 2.328 0.177 2.564 1.718 6.831 16.582 1.998 0.058 6.323 7.508 7.530 11.378 10.612 nan 9.080 3.602 12.050 11.937 1.545 2.701 9.781 15.332 4.095 6.368 3.813 7.950 2.940 2.793 3.937 3.402 2.340 1.513 4.548 5.027 0.920 2.766 3.429 6.831 1.362 3.115 2.717 1.111 2034 chr5 154345450 154350840 + 0 NA 3' UTR (NM_001014990, exon 6 of 6) 3' UTR (NM_001014990, exon 6 of 6) 27512 NM_001014990 29093 Hs.483924 NM_014180 ENSG00000082515 MRPL22 HSPC158|L22mt|MRP-L22|MRP-L25|RPML25 mitochondrial ribosomal protein L22 protein-coding 0.652 nan 0.742 0.124 0.178 0.118 0.187 0.085 0.203 0.057 0.075 0.142 0.354 0.060 0.132 1.633 1.095 10.186 2.194 0.220 0.326 0.192 0.078 0.178 0.156 0.299 0.559 0.188 0.246 0.434 0.254 0.460 0.555 0.141 0.270 0.229 0.804 0.388 0.320 0.107 0.018 0.030 0.187 0.142 0.054 0.017 0.091 0.137 2556 chr9 131485126 131498259 + 0 NA TTS (NM_006336) TTS (NM_006336) 4951 NR_046240 100506100 Hs.62946 NR_046240 ENSG00000223478 LOC100506100 - uncharacterized LOC100506100 ncRNA nan 1.224 1.836 1.335 0.936 0.432 0.645 0.490 0.208 0.440 0.251 0.846 2.404 0.503 0.059 0.768 0.905 1.299 1.614 2.712 2.463 nan 0.441 0.827 0.950 0.789 1.244 1.950 2.706 6.091 6.434 0.464 0.516 1.165 1.258 1.168 2.633 1.380 0.586 0.527 0.506 0.227 0.562 0.645 0.846 0.962 0.712 0.106 0.627 1847 chr3 176907987 176920904 + 0 NA promoter-TSS (NM_001321193) promoter-TSS (NM_001321193) -173 NM_001321193 79718 Hs.714201 NM_024665 ENSG00000177565 TBL1XR1 C21|DC42|IRA1|MRD41|TBLR1 transducin beta like 1 X-linked receptor 1 protein-coding 4.530 3.108 3.287 6.003 6.443 3.552 2.790 3.166 0.386 3.696 1.441 3.684 5.021 4.822 0.160 3.010 3.748 6.509 12.459 5.922 4.756 5.876 2.778 8.745 8.287 3.447 4.073 5.605 6.433 5.741 6.430 1.420 3.358 4.914 4.610 5.848 6.608 2.476 1.291 2.184 2.102 1.536 4.144 2.790 3.684 0.850 1.688 2.723 3.001 1600 chr20 30840133 30879227 + 0 NA Intergenic Intergenic -5774 NM_004798 9371 Hs.369670 NM_004798 ENSG00000101350 KIF3B FLA8|HH0048|KLP-11 kinesin family member 3B protein-coding 1.206 1.595 1.249 1.090 0.667 0.394 0.245 0.267 0.206 0.386 0.301 0.897 1.548 0.208 0.147 0.783 0.880 0.465 0.701 0.837 nan 5.707 1.387 0.588 0.648 0.798 1.253 1.946 1.905 1.038 0.706 0.447 0.759 1.261 1.432 0.545 nan 0.861 0.509 0.328 0.412 0.356 0.124 0.245 0.897 0.166 0.337 0.263 0.206 1128 chr17 77803160 77827163 + 0 NA Intergenic CpG -1948 NM_003655 8535 Hs.405046 NM_003655 ENSG00000141582 CBX4 NBP16|PC2 chromobox 4 protein-coding 1.924 1.987 2.109 1.671 2.659 1.256 1.491 1.042 0.316 0.668 0.386 0.911 3.840 1.854 0.131 1.370 2.092 1.541 2.496 1.926 1.716 1.972 0.545 1.925 1.808 nan 1.271 2.190 2.497 1.463 1.091 1.360 1.656 0.536 0.725 0.554 1.395 nan 0.478 2.270 2.543 0.080 0.530 1.491 0.911 0.529 1.608 0.649 0.210 2204 chr6 163108866 163129176 + 0 NA intron (NM_013987, intron 1 of 10) intron (NM_013987, intron 1 of 10) -29143 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PARK2CRG PARK2 coregulated protein-coding 0.761 nan 0.991 0.100 0.173 0.079 1.050 0.073 0.066 0.055 0.060 0.094 0.176 0.080 0.103 0.451 0.420 0.265 0.240 0.354 0.350 5.199 1.665 0.170 0.210 1.351 1.410 0.201 0.210 nan 0.412 0.116 0.191 3.521 2.786 0.445 0.861 0.338 0.319 0.017 0.016 1.009 0.035 1.050 0.094 0.014 0.045 0.030 0.304 634 chr12 65217603 65221491 + 0 NA intron (NM_015279, intron 1 of 11) intron (NM_015279, intron 1 of 11) 1195 NM_015279 23329 Hs.192492 NM_015279 ENSG00000111490 TBC1D30 - TBC1 domain family member 30 protein-coding 4.757 0.523 2.306 6.693 4.950 1.896 4.179 0.095 0.125 3.131 1.785 4.589 14.570 0.333 0.063 10.559 9.723 0.054 0.164 16.168 12.311 11.724 3.886 0.481 0.451 4.987 5.932 13.305 25.221 3.663 5.660 4.111 8.752 4.969 4.234 3.180 2.910 6.695 4.826 2.756 2.424 1.032 2.453 4.179 4.589 1.031 0.652 3.666 1.692 641 chr12 77819647 77834789 + 0 NA Intergenic Intergenic -367858 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding nan 0.732 0.581 0.122 0.357 0.221 0.085 0.612 0.159 0.113 0.119 0.063 0.298 0.036 0.070 0.347 0.263 0.221 0.223 0.485 0.532 0.183 0.079 0.275 0.279 4.788 5.255 nan 0.380 0.466 0.227 0.157 0.246 0.091 0.174 0.367 0.656 nan 0.633 0.073 0.325 0.006 0.062 0.085 0.063 0.025 0.033 0.033 0.132 2047 chr5 174142160 174179854 + 0 NA Intergenic AT_rich|Low_complexity|Low_complexity 9432 NM_002449 4488 Hs.89404 NM_002449 ENSG00000120149 MSX2 CRS2|FPP|HOX8|MSH|PFM|PFM1 msh homeobox 2 protein-coding 0.573 0.474 0.521 0.040 0.246 0.123 0.495 0.065 0.060 0.021 0.042 0.041 1.510 0.081 0.100 0.146 0.067 3.942 nan 0.671 0.707 0.060 0.037 0.046 0.040 0.165 nan 0.333 0.480 0.243 0.087 0.167 0.299 1.138 1.390 0.151 0.292 0.083 0.143 0.028 0.185 0.270 0.010 0.495 0.041 0.005 0.030 0.034 0.066 2410 chr8 108190958 108230518 + 0 NA Intergenic L1MB4|LINE|L1 138005 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 1.243 nan nan 0.572 0.320 0.154 0.353 0.254 0.146 0.150 0.144 0.175 1.144 0.034 0.086 0.369 0.274 0.233 0.285 0.795 1.111 nan 0.501 0.570 0.509 1.587 nan 0.760 nan nan 0.226 0.145 0.281 3.236 4.376 0.245 nan 0.628 0.480 0.333 0.054 1.042 0.702 0.353 0.175 0.039 0.092 0.027 0.100 1094 chr17 48961340 49010332 + 0 NA Intergenic L2b|LINE|L2 -40497 NM_001243877 10140 Hs.703321 NM_005749 ENSG00000141232 TOB1 APRO5|APRO6|PIG49|TOB|TROB|TROB1 transducer of ERBB2, 1 protein-coding 2.152 2.236 nan 1.018 2.050 1.010 2.114 0.249 0.102 1.112 0.685 2.320 3.332 0.157 0.110 2.599 3.542 0.994 1.840 2.269 nan 2.229 1.041 3.153 3.394 1.548 1.979 2.732 nan 1.831 1.230 3.812 5.124 2.015 1.937 0.939 2.123 1.278 0.884 1.388 0.517 0.539 0.952 2.114 2.320 0.535 1.013 4.747 0.664 2335 chr7 152368311 152380706 + 0 NA Intergenic AluSx4|SINE|Alu -1258 NM_005431 7516 Hs.647093 NM_005431 ENSG00000196584 XRCC2 FANCU X-ray repair cross complementing 2 protein-coding 2.281 1.065 nan 1.101 1.035 0.492 0.813 0.575 0.234 0.923 0.541 0.994 1.510 1.179 0.205 1.912 1.491 1.742 2.174 1.605 1.226 4.047 1.893 2.198 2.162 1.454 1.763 1.355 2.300 2.249 2.015 1.352 1.758 2.860 4.187 2.461 2.270 2.812 1.574 1.267 0.876 0.912 0.507 0.813 0.994 0.525 0.549 0.497 0.540 1478 chr2 144100461 144126736 + 0 NA intron (NM_018460, intron 6 of 13) intron (NM_018460, intron 6 of 13) 226699 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 0.906 nan 1.052 0.109 0.342 0.256 0.390 0.126 0.091 0.203 0.195 0.583 0.327 0.033 0.080 0.370 0.257 0.155 0.252 0.357 0.451 1.004 0.370 0.210 0.204 5.218 5.016 0.301 0.303 0.906 0.663 0.083 0.228 0.051 0.041 0.607 1.367 0.296 0.290 0.070 0.031 0.007 0.289 0.390 0.583 0.026 0.027 0.051 0.226 1141 chr17 79847903 79857775 + 0 NA intron (NM_001289419, intron 3 of 3) AluSp|SINE|Alu 3036 NM_001289416 51529 Hs.534456 NM_016476 ENSG00000141552 ANAPC11 APC11|Apc11p|HSPC214 anaphase promoting complex subunit 11 protein-coding 3.502 2.652 3.649 2.267 3.698 2.170 5.156 1.970 0.600 1.348 0.545 2.447 4.204 1.575 0.179 2.717 2.808 2.701 3.785 3.341 3.265 2.645 1.636 4.169 4.181 nan 3.070 2.814 4.862 3.989 4.206 1.694 3.805 2.572 2.879 2.669 2.890 nan 0.735 0.893 1.301 0.670 2.179 5.156 2.447 0.851 1.867 0.702 0.855 1292 chr19 35737790 35741637 + 0 NA 5' UTR (NM_001260490, exon 1 of 7) 5' UTR (NM_001260490, exon 1 of 7) 154 NM_205834 51599 Hs.466507 NM_015925 ENSG00000105699 LSR ILDR3|LISCH7 lipolysis stimulated lipoprotein receptor protein-coding 1.667 4.635 5.980 13.372 6.599 4.095 0.761 0.040 0.041 2.072 1.146 5.945 27.074 7.023 0.201 5.295 8.264 7.377 11.740 11.336 12.189 9.843 6.696 17.446 19.048 0.106 0.197 12.136 13.453 nan 0.089 10.456 15.683 6.277 5.699 0.099 0.154 4.697 2.800 5.738 6.374 1.972 1.524 0.761 5.945 0.874 0.053 3.593 0.033 247 chr1 176739818 176745098 + 0 NA intron (NM_020318, intron 17 of 22) intron (NM_020318, intron 17 of 22) 256123 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA nan nan nan 0.082 0.241 0.107 0.145 0.156 0.093 0.080 0.155 0.091 0.365 0.071 2.721 2.779 13.474 3.598 nan 0.481 0.087 0.113 1.929 1.627 0.524 0.821 0.361 0.359 0.423 0.158 1.783 7.117 0.094 0.144 0.626 nan 0.572 0.650 0.120 0.017 0.015 0.145 0.091 0.056 0.097 5.906 0.534 2037 chr5 154906930 154926955 + 0 NA Intergenic MLT1A0|LTR|ERVL-MaLR 523627 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 1.168 nan 1.163 0.153 0.363 0.224 0.184 0.079 0.088 0.133 0.057 0.143 0.339 0.049 0.156 0.202 0.129 0.286 0.627 0.327 0.338 0.371 0.118 0.089 0.086 0.512 0.733 0.367 0.323 0.675 0.399 0.099 0.151 2.188 2.863 0.390 1.291 0.546 0.462 0.136 0.088 0.939 0.039 0.184 0.143 0.248 0.032 0.054 0.822 786 chr14 50098106 50110000 + 0 NA Intergenic AluSx1|SINE|Alu -2105 NM_001083908 55172 Hs.231761 NM_018139 ENSG00000165506 DNAAF2 C14orf104|CILD10|KTU|PF13 dynein axonemal assembly factor 2 protein-coding nan nan 2.299 3.648 2.299 1.402 2.890 1.068 0.309 1.042 0.820 2.075 4.387 2.222 0.135 2.718 2.834 1.898 3.128 3.322 3.039 6.370 2.064 5.812 6.031 2.110 2.686 3.777 6.260 5.739 7.714 1.941 3.509 4.572 3.490 3.592 3.866 nan 2.028 2.292 3.821 0.680 2.093 2.890 2.075 0.711 1.991 1.066 1.404 1980 chr5 57071257 57087859 + 0 NA Intergenic Intergenic 115431 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LOC101928539 - uncharacterized LOC101928539 ncRNA nan nan 0.732 0.049 0.229 0.174 0.184 1.042 0.171 0.057 0.094 0.029 0.392 4.338 0.183 0.205 0.117 0.606 2.314 0.136 0.210 nan 0.092 0.127 0.169 0.313 0.423 0.170 0.186 nan 0.171 0.060 0.129 0.101 0.145 0.409 1.094 0.310 0.441 0.023 0.102 0.006 0.043 0.184 0.029 0.035 0.018 0.018 0.430 2457 chr8 145686766 145693230 + 0 NA intron (NM_138496, intron 1 of 4) intron (NM_138496, intron 1 of 4) 420 NM_138496 50626 Hs.459379 NM_032687 ENSG00000187954 CYHR1 CHRP cysteine and histidine rich 1 protein-coding 3.374 1.851 nan 4.337 2.859 1.766 1.912 1.241 0.150 0.871 0.231 5.626 12.305 1.559 0.079 2.147 2.967 3.237 4.619 nan 5.929 nan 1.099 6.750 6.155 1.679 2.506 2.897 4.062 1.976 1.743 2.465 3.679 1.902 1.859 1.812 2.694 1.429 0.586 2.772 4.818 0.380 1.035 1.912 5.626 0.972 2.850 1.522 0.810 2049 chr5 177364927 177386683 + 0 NA Intergenic MIR|SINE|MIR 47438 NM_006261 5626 Hs.158301 NM_006261 ENSG00000175325 PROP1 CPHD2|PROP-1 PROP paired-like homeobox 1 protein-coding 0.994 1.478 0.948 0.150 0.359 0.198 0.737 0.070 0.097 0.216 0.193 1.776 2.372 0.141 0.139 0.543 0.950 0.638 nan 1.320 1.234 1.164 0.336 0.536 0.534 1.456 nan 1.756 1.575 0.393 0.253 0.428 0.607 0.446 0.349 0.183 0.335 0.656 0.416 2.664 4.297 0.119 0.075 0.737 1.776 0.405 0.177 0.173 0.079 793 chr14 57168918 57178373 + 0 NA Intergenic AluJb|SINE|Alu 98736 NR_073036 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding nan nan 2.022 0.139 0.645 0.357 0.407 0.109 0.116 0.099 0.490 0.385 0.057 0.141 0.236 0.261 14.753 4.594 0.425 0.551 0.836 0.325 0.681 0.918 0.174 0.240 0.369 0.418 0.972 0.461 0.251 0.525 0.173 0.301 1.651 3.645 nan 0.636 0.049 0.178 0.081 0.211 0.407 0.490 0.051 0.032 0.120 0.872 2048 chr5 175960228 175974933 + 0 NA Intergenic L2c|LINE|L2 -1932 NM_001171976 54825 Hs.4205 NM_017675 ENSG00000074276 CDHR2 PCDH24|PCLKC cadherin related family member 2 protein-coding 3.305 1.761 3.841 1.714 1.316 0.760 1.134 0.917 0.195 1.514 0.666 2.374 5.799 3.564 0.165 2.919 3.116 3.334 nan 3.522 2.883 3.531 1.404 3.761 3.610 2.386 nan 4.135 6.407 4.228 5.061 1.940 2.849 4.689 4.443 3.177 3.876 1.712 0.982 1.063 2.615 0.917 1.148 1.134 2.374 0.814 2.532 1.244 1.117 2492 chr9 16521316 16534954 + 0 NA intron (NM_001317939, intron 4 of 6) intron (NM_001317939, intron 4 of 6) -251824 NR_073471 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding nan nan 0.728 0.103 0.249 0.106 0.293 0.555 0.188 0.115 0.161 0.052 0.401 0.367 0.117 0.255 0.328 0.553 1.302 0.377 0.484 0.190 0.116 0.116 0.143 3.213 3.854 0.120 0.124 0.427 0.239 1.446 1.510 0.697 0.957 0.146 0.286 1.054 0.944 0.020 0.072 0.126 0.035 0.293 0.052 0.186 0.298 1.094 0.109 824 chr14 89672102 89700166 + 0 NA intron (NM_001085471, intron 4 of 6) intron (NM_001085471, intron 4 of 6) 197320 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 1.888 1.137 nan 0.518 0.831 0.409 0.511 0.255 0.178 0.857 0.341 2.300 1.486 0.042 0.120 0.302 0.279 0.264 0.527 1.061 1.231 0.903 0.565 0.407 0.453 2.182 2.811 2.385 3.777 0.767 0.557 0.141 0.322 1.055 0.858 0.207 0.382 nan 1.361 0.765 0.553 0.303 0.546 0.511 2.300 0.131 0.083 0.035 0.073 1281 chr19 19684320 19692807 + 0 NA intron (NR_038198, intron 2 of 7) AluSc|SINE|Alu 39489 NM_153221 148113 Hs.279574 NM_153221 ENSG00000160161 CILP2 CLIP-2 cartilage intermediate layer protein 2 protein-coding 2.717 0.795 1.332 1.069 1.456 0.794 0.542 0.160 0.152 0.662 0.474 0.225 0.365 0.090 0.095 0.656 0.779 0.398 0.403 0.554 0.732 9.129 2.438 0.361 0.328 0.874 1.087 0.327 0.467 3.906 4.352 0.244 0.327 2.722 3.918 1.144 2.916 3.906 1.560 0.072 0.142 0.949 0.101 0.542 0.225 0.308 0.047 0.035 0.814 1906 chr4 83291991 83297268 + 0 NA exon (NM_002138, exon 1 of 8) exon (NM_002138, exon 1 of 8) 520 NM_002138 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 6.791 3.588 4.291 4.955 9.529 4.407 6.050 3.603 0.183 3.313 1.385 6.281 11.344 3.748 0.160 8.414 7.261 11.645 15.807 11.066 10.083 11.230 5.371 20.196 21.236 4.662 nan 9.768 14.835 11.388 15.646 3.998 8.024 7.875 8.711 11.287 8.971 2.879 1.633 6.057 7.490 1.392 4.474 6.050 6.281 1.262 3.399 1.867 2.995 2513 chr9 73020399 73039181 + 0 NA promoter-TSS (NM_001206) promoter-TSS (NM_001206) -217 NM_001206 687 Hs.150557 NM_001206 ENSG00000119138 KLF9 BTEB|BTEB1 Kruppel like factor 9 protein-coding nan nan nan 4.278 5.905 3.039 2.839 3.066 0.351 3.019 1.455 6.868 6.267 3.318 0.132 2.447 3.087 5.681 nan 4.985 nan 2.353 1.250 8.164 8.435 2.678 3.274 4.721 7.293 3.480 4.611 2.806 3.784 5.916 5.658 3.038 4.673 1.549 1.059 1.630 3.800 1.982 2.467 2.839 6.868 1.253 3.069 2.567 1.879 1353 chr19 48693105 48708855 + 0 NA TTS (NM_199341) TTS (NM_199341) 27031 NM_199341 374920 Hs.664054 NM_199341 ENSG00000185453 C19orf68 - chromosome 19 open reading frame 68 protein-coding 1.833 1.466 1.212 0.994 1.669 0.813 1.353 0.437 0.082 0.636 0.370 0.522 1.436 1.021 0.136 1.250 1.696 1.001 1.222 1.987 1.876 4.514 1.736 2.221 2.402 1.963 2.795 1.409 2.050 1.890 1.723 0.797 1.021 2.073 1.862 1.802 2.323 2.505 1.407 1.159 0.695 0.290 0.136 1.353 0.522 0.641 0.309 0.402 0.535 1885 chr4 35462466 35472685 + 0 NA Intergenic L1MEc|LINE|L1 -778163 NR_122079 439933 Hs.591071 NR_122079 ENSG00000247193 LOC439933 - uncharacterized LOC439933 ncRNA 0.459 0.512 0.457 0.103 0.154 0.094 0.076 0.059 0.063 0.078 0.114 0.083 0.161 0.003 0.061 0.436 0.161 5.708 7.388 0.203 0.268 0.254 0.094 0.196 0.166 0.349 0.543 0.235 0.228 0.463 0.164 0.124 0.168 0.090 0.104 0.115 0.224 0.322 0.480 0.087 0.009 0.062 0.076 0.083 0.030 0.020 0.122 1602 chr20 31339975 31352731 + 0 NA Intergenic Intergenic -3838 NM_006892 1789 Hs.643024 NM_006892 ENSG00000088305 DNMT3B ICF|ICF1|M.HsaIIIB DNA methyltransferase 3 beta protein-coding 1.676 1.880 1.382 1.363 0.595 0.250 0.602 0.443 0.176 1.110 0.619 1.222 2.531 0.622 0.116 1.081 1.497 0.712 1.074 1.039 nan 6.100 1.359 1.546 1.699 0.617 1.111 2.281 2.641 1.193 1.048 0.578 1.100 1.560 1.845 0.664 nan 0.830 0.515 0.791 1.058 0.202 0.535 0.602 1.222 0.148 0.549 0.241 0.173 1420 chr2 25531754 25538348 + 0 NA intron (NM_022552, intron 2 of 22) intron (NM_022552, intron 2 of 22) 16539 NR_031570 100302246 NR_031570 ENSG00000221445 MIR1301 MIRN1301|hsa-mir-1301|mir-1301 microRNA 1301 ncRNA 2.862 1.600 3.662 3.088 2.295 1.044 1.774 0.132 0.048 4.348 1.756 1.461 7.733 0.265 0.073 2.224 4.620 0.693 0.887 5.847 5.307 5.579 1.374 3.718 3.988 1.898 2.677 8.705 nan 1.702 2.004 1.042 1.565 2.065 1.955 2.069 6.863 2.949 1.567 4.092 2.412 0.917 0.798 1.774 1.461 1.497 2.470 1.124 2.632 135 chr1 67389193 67400892 + 0 NA promoter-TSS (NM_001077701) promoter-TSS (NM_001077701) -884 NM_001077701 57708 Hs.605432 NM_020948 ENSG00000198160 MIER1 ER1|MI-ER1 MIER1 transcriptional regulator protein-coding 4.525 2.076 nan 2.693 2.618 1.248 1.525 2.478 0.303 2.576 1.238 3.030 6.530 3.500 0.176 2.361 3.858 2.739 4.305 5.110 5.149 4.016 1.673 7.518 7.253 nan 5.695 5.391 7.772 4.716 4.229 2.168 4.459 4.376 3.397 4.589 5.885 2.584 1.178 2.583 5.327 0.706 1.521 1.525 3.030 0.615 1.555 1.462 1.183 466 chr11 64098867 64128738 + 0 NA intron (NM_032251, intron 14 of 26) AluSx|SINE|Alu -4426 NR_106977 102466815 NR_106977 ENSG00000278359 MIR7155 hsa-mir-7155 microRNA 7155 ncRNA nan 1.169 1.633 1.237 0.775 0.327 0.907 0.292 0.106 0.677 0.298 0.488 1.933 0.894 0.106 2.195 3.338 0.721 1.148 1.875 1.606 2.443 0.592 1.143 1.093 1.430 2.147 1.385 2.186 1.683 1.540 0.989 1.134 1.067 1.072 0.820 1.691 1.588 0.897 1.342 0.479 0.183 0.720 0.907 0.488 0.649 1.009 0.395 0.380 2100 chr6 31164171 31173910 + 0 NA intron (NR_026791, intron 1 of 1) MLT1G1|LTR|ERVL-MaLR 3503 NR_026791 253018 Hs.659818 NR_026791 ENSG00000206344 HCG27 bCX101P6.9|bPG299F13.9|bQB115I13.2 HLA complex group 27 (non-protein coding) ncRNA nan 4.272 nan 5.048 7.276 4.086 1.849 1.612 0.595 2.118 0.692 5.200 3.935 2.040 0.166 2.560 2.921 4.897 nan nan 2.304 9.148 6.316 3.632 3.873 0.585 0.780 8.226 11.495 0.398 0.259 1.322 2.077 3.610 4.437 0.175 0.457 2.714 1.710 1.768 3.763 0.732 0.309 1.849 5.200 0.372 1.413 1.627 0.157 142 chr1 72128922 72143910 + 0 NA intron (NM_173808, intron 4 of 6) L1MEg|LINE|L1 166279 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA nan 0.767 0.933 0.211 0.478 0.219 0.153 0.060 0.084 1.120 0.653 3.316 0.588 0.029 0.132 0.325 0.226 0.225 0.291 0.765 nan 6.872 2.471 0.390 0.378 1.970 nan 0.455 0.488 0.418 0.164 0.219 0.198 1.042 0.782 0.430 0.920 1.043 0.754 0.108 0.349 0.265 0.048 0.153 3.316 0.007 0.075 0.059 0.139 1919 chr4 129730367 129735019 + 0 NA promoter-TSS (NM_001287443) promoter-TSS (NM_001287443) 268 NM_001287441 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 7.969 8.653 nan 10.295 7.587 3.873 4.530 4.811 0.757 2.764 1.091 8.332 12.358 5.960 0.135 3.640 3.899 6.244 9.762 9.967 6.278 5.332 2.249 9.041 9.157 3.728 4.596 6.838 12.488 9.737 14.038 1.222 4.351 6.211 4.536 9.258 7.640 2.119 1.358 5.536 5.042 1.476 7.470 4.530 8.332 0.942 3.203 1.911 3.560 844 chr14 105249183 105272195 + 0 NA promoter-TSS (NM_005163) promoter-TSS (NM_005163) -751 NM_005163 207 Hs.525622 NM_005163 ENSG00000142208 AKT1 AKT|CWS6|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA AKT serine/threonine kinase 1 protein-coding 1.913 1.313 4.784 1.245 0.847 0.488 1.634 0.828 0.149 0.496 0.230 0.739 2.074 1.215 0.108 1.066 2.025 1.123 1.624 3.244 2.942 2.603 0.757 0.605 0.477 0.776 1.372 2.126 3.329 1.502 1.530 1.193 1.551 0.732 0.726 0.553 0.711 1.608 0.833 3.753 0.320 0.132 0.217 1.634 0.739 0.281 0.483 0.402 0.182 2194 chr6 157094432 157113285 + 0 NA intron (NM_020732, intron 1 of 19) intron (NM_020732, intron 1 of 19) -2993 NR_039676 100616154 NR_039676 ENSG00000271899 MIR4466 mir-4466 microRNA 4466 ncRNA nan 1.667 3.201 4.218 3.011 1.539 3.157 1.465 0.111 1.490 0.684 3.955 5.657 2.732 0.130 3.624 5.477 6.879 6.525 7.613 nan 6.228 2.558 6.519 6.384 1.659 2.167 3.383 5.175 7.876 9.234 1.539 3.744 4.315 4.127 5.082 nan 1.160 0.653 4.411 3.638 1.211 2.457 3.157 3.955 0.874 1.918 1.080 1.497 317 chr1 244995724 245007596 + 0 NA intron (NM_001312872, intron 2 of 4) L2a|LINE|L2 2882 NR_132420 116228 Hs.411490 NM_198076 ENSG00000203667 COX20 FAM36A COX20, cytochrome c oxidase assembly factor protein-coding nan 5.234 nan 6.796 8.016 4.585 4.732 3.153 0.710 3.555 1.780 5.295 8.152 3.847 0.202 6.478 6.489 8.670 10.865 8.935 7.546 8.438 5.619 17.080 18.613 3.140 3.682 5.600 8.577 5.211 6.349 3.775 4.275 7.026 7.125 6.046 5.116 2.636 1.457 4.319 2.729 1.267 2.362 4.732 5.295 1.020 2.087 1.911 1.960 1364 chr19 49997928 50001763 + 0 NA intron (NM_001015, intron 1 of 4) intron (NM_001015, intron 1 of 4) 223 NM_001015 6205 Hs.433529 NM_001015 ENSG00000142534 RPS11 S11 ribosomal protein S11 protein-coding 5.869 3.360 5.490 4.398 9.887 4.984 3.958 2.136 0.696 2.248 1.216 5.111 7.508 5.347 0.270 5.909 5.192 6.279 9.320 9.804 10.282 13.450 8.665 23.443 25.912 5.815 7.703 10.926 15.061 11.868 12.120 4.323 7.016 6.142 8.484 6.913 9.693 5.370 2.531 3.925 4.114 1.072 2.357 3.958 5.111 1.903 2.824 2.058 3.949 563 chr12 8178181 8192934 + 0 NA 5' UTR (NM_018416, exon 1 of 11) 5' UTR (NM_018416, exon 1 of 11) 198 NM_018416 55810 Hs.120844 NM_018416 ENSG00000065970 FOXJ2 FHX forkhead box J2 protein-coding 2.066 nan nan 3.402 2.486 1.372 1.750 0.556 0.077 0.964 0.554 1.744 6.717 2.366 0.154 1.342 1.747 2.034 3.444 nan 4.511 4.577 1.536 3.418 3.404 1.827 2.264 1.623 2.029 2.454 2.087 1.256 2.284 1.492 1.783 1.557 nan 1.592 0.830 1.541 2.194 0.304 0.118 1.750 1.744 6.084 0.704 1.423 0.657 622 chr12 56543847 56556468 + 0 NA intron (NM_002475, intron 5 of 7) AluSx1|SINE|Alu -1888 NM_079423 4637 Hs.632717 NM_021019 ENSG00000092841 MYL6 ESMLC|LC17|LC17-GI|LC17-NM|LC17A|LC17B|MLC-3|MLC1SM|MLC3NM|MLC3SM myosin light chain 6 protein-coding nan 2.842 1.994 2.840 4.006 2.226 3.659 1.495 0.243 2.368 1.271 3.963 7.942 2.291 0.112 nan 4.372 3.598 4.741 7.139 nan 7.842 2.975 6.426 6.870 3.128 nan 5.484 nan 4.492 4.400 1.741 2.688 5.302 5.836 2.369 3.721 3.893 1.767 2.228 3.672 1.447 1.354 3.659 3.963 1.577 2.068 1.255 1.586 1910 chr4 105408024 105423372 + 0 NA non-coding (NR_132741, exon 2 of 3) non-coding (NR_132741, exon 2 of 3) 360 NM_025212 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 1.520 nan nan 2.795 4.342 2.193 2.093 0.146 0.052 1.410 1.005 3.193 6.109 3.808 0.120 0.546 0.591 0.760 nan 3.811 3.584 1.564 0.608 0.514 0.595 1.815 nan 2.703 3.557 2.814 2.772 0.322 0.771 3.821 2.761 2.331 nan 1.531 0.694 0.007 1.379 0.867 2.302 2.093 3.193 0.190 0.613 0.393 1.177 2540 chr9 126760787 126781400 + 0 NA intron (NR_135129, intron 1 of 1) CpG 582 NR_135129 100505588 Hs.547168 NR_135129 ENSG00000236668 LOC100505588 - uncharacterized LOC100505588 ncRNA nan nan 0.608 4.106 1.400 0.692 1.784 0.284 0.071 2.200 0.959 4.768 nan 0.509 0.057 0.360 0.398 0.582 0.673 2.210 1.569 0.986 0.391 0.367 0.507 1.729 nan 1.664 2.462 4.161 4.235 0.643 1.152 0.469 0.421 0.319 0.468 nan 1.345 0.800 0.118 0.106 0.172 1.784 4.768 0.716 1.522 0.241 0.123 543 chr11 130180894 130194323 + 0 NA Intergenic L1M2|LINE|L1 -3001 NM_014155 29068 Hs.721470 NM_014155 ENSG00000196323 ZBTB44 BTBD15|HSPC063|ZNF851 zinc finger and BTB domain containing 44 protein-coding 1.174 nan 1.200 1.437 1.531 0.823 0.754 0.222 0.024 0.778 0.544 1.452 nan 1.064 0.130 3.679 3.930 1.323 1.695 1.760 1.824 1.961 0.702 2.608 2.707 1.081 1.536 1.837 2.379 2.014 2.230 4.195 6.362 1.461 1.318 1.505 2.247 1.283 0.816 0.940 1.386 0.403 1.021 0.754 1.452 0.101 0.584 3.432 0.581 1669 chr21 30627099 30636022 + 0 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) -39556 NM_001186 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 0.996 0.821 4.273 1.079 0.569 0.271 0.073 0.243 0.036 0.473 0.287 0.272 0.687 0.072 0.101 0.346 0.379 0.222 0.460 2.104 2.144 0.186 0.101 0.199 0.294 1.276 2.032 0.324 0.261 1.180 0.544 0.143 0.258 1.605 2.312 0.514 1.326 nan 2.449 0.037 0.090 0.525 0.026 0.073 0.272 0.120 0.092 0.055 0.207 803 chr14 64966451 64978157 + 0 NA promoter-TSS (NM_001304507) promoter-TSS (NM_001304507) -373 NM_001304507 7597 Hs.654571 NM_006977 ENSG00000089775 ZBTB25 C14orf51|KUP|ZNF46 zinc finger and BTB domain containing 25 protein-coding 6.239 nan 4.848 4.729 4.646 2.310 3.970 4.154 0.518 1.846 0.995 4.211 7.317 3.950 0.169 3.144 3.831 4.991 7.416 8.134 7.004 3.912 1.724 nan 7.254 3.635 4.160 5.099 nan 5.404 7.042 1.754 4.002 6.240 6.341 3.112 3.504 3.536 1.885 6.863 5.927 1.704 3.602 3.970 4.211 0.956 2.148 1.531 1.917 1181 chr18 42471331 42486429 + 0 NA intron (NM_015559, intron 3 of 5) intron (NM_015559, intron 3 of 5) 71251 NR_036203 100422829 NR_036203 ENSG00000265957 MIR4319 - microRNA 4319 ncRNA nan 1.128 2.232 2.242 0.911 0.436 0.862 0.125 0.074 0.954 0.651 2.677 2.274 0.014 0.075 0.382 0.410 0.244 0.473 3.901 4.161 4.265 1.747 0.065 0.065 0.693 0.891 2.229 3.043 0.927 0.833 0.100 0.321 2.338 2.477 0.190 nan 5.168 2.797 1.096 0.259 0.777 0.100 0.862 2.677 0.309 1.116 0.026 0.155 2429 chr8 134244771 134264741 + 0 NA intron (NM_001135242, intron 14 of 15) MIRb|SINE|MIR 51474 NM_080838 8840 Hs.492974 NM_003882 ENSG00000104415 WISP1 CCN4|WISP1c|WISP1i|WISP1tc WNT1 inducible signaling pathway protein 1 protein-coding nan 1.433 2.619 2.529 0.393 0.280 0.096 0.104 0.138 0.330 0.161 0.904 6.506 0.033 0.096 0.274 0.239 0.190 0.474 1.083 1.072 3.117 0.994 nan 1.226 0.221 0.422 3.171 2.561 1.248 1.484 0.326 0.585 0.534 0.338 0.563 1.537 0.966 0.693 0.676 0.963 0.067 0.100 0.096 0.904 0.286 1.320 0.417 0.712 1620 chr20 45311395 45339851 + 0 NA Intergenic LTR16C|LTR|ERVL -7347 NM_033550 112858 Hs.440263 NM_033550 ENSG00000172315 TP53RK BUD32|C20orf64|Nori-2|Nori-2p|PRPK|dJ101A2 TP53 regulating kinase protein-coding nan nan 1.226 0.542 0.964 0.394 0.877 0.736 0.131 0.255 0.145 0.980 2.105 0.687 0.119 2.526 3.154 0.911 1.907 1.148 1.069 nan 1.538 1.012 1.140 0.759 1.073 1.697 2.814 nan 1.484 3.106 2.661 0.206 0.181 2.052 2.888 0.540 0.473 0.309 1.122 0.040 0.596 0.877 0.980 0.254 0.415 1.073 0.613 1452 chr2 75288000 75306636 + 0 NA intron (NM_015727, intron 2 of 3) L1MC3|LINE|L1 -20621 NR_049796 100846995 NR_049796 ENSG00000263909 MIR5000 - microRNA 5000 ncRNA nan nan 2.738 0.856 1.156 0.843 0.379 0.101 0.051 0.287 0.186 1.927 0.837 0.047 0.105 0.443 0.305 0.275 0.553 1.956 2.338 3.041 0.920 0.242 0.292 0.835 1.166 3.173 3.052 1.084 0.853 0.225 0.300 0.359 0.580 0.846 2.046 nan 1.760 0.206 0.133 0.071 0.239 0.379 1.927 0.244 1.093 0.058 0.379 1535 chr2 213757511 213784939 + 0 NA Intergenic Intergenic -19756 NR_039935 100616267 NR_039935 ENSG00000266354 MIR4776-1 mir-4776-1 microRNA 4776-1 ncRNA nan 1.428 nan 0.369 0.457 0.226 0.126 0.168 0.059 0.121 0.077 0.166 2.076 0.047 0.106 0.362 0.276 1.173 6.018 0.222 0.267 0.598 0.212 0.214 0.235 0.439 0.694 0.703 nan 0.339 0.153 0.125 0.276 0.304 0.402 0.285 0.525 0.550 0.436 0.014 0.110 0.076 0.066 0.126 0.166 0.015 0.074 0.079 0.045 2414 chr8 116112908 116128662 + 0 NA Intergenic Intergenic 559454 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding nan nan 1.247 0.213 0.275 0.082 0.073 0.170 0.103 0.088 0.119 0.714 0.433 0.055 0.094 0.419 0.522 0.264 0.384 0.639 0.791 nan 0.064 0.660 nan 1.951 nan 0.921 1.102 6.183 5.976 0.211 0.503 1.480 1.123 0.244 0.449 0.789 0.726 0.018 0.085 0.525 0.142 0.073 0.714 0.019 0.277 0.457 0.079 984 chr16 75271297 75302661 + 0 NA intron (NM_001170720, intron 1 of 7) intron (NM_001170720, intron 1 of 7) -1453 NM_001170717 9564 Hs.479747 NM_014567 ENSG00000050820 BCAR1 CAS|CAS1|CASS1|CRKAS|P130Cas BCAR1, Cas family scaffolding protein protein-coding 1.958 1.137 nan 0.820 0.909 0.327 1.550 1.624 0.256 0.350 0.162 1.211 2.048 0.529 0.068 1.479 2.301 0.959 1.657 1.616 1.528 1.040 0.441 2.008 1.941 1.872 2.541 1.341 2.188 2.719 2.819 0.704 0.980 0.487 0.489 0.810 1.175 1.467 0.720 0.946 0.578 0.134 0.452 1.550 1.211 1.091 0.951 0.214 0.162 1676 chr21 36165816 36170053 + 0 NA intron (NM_001001890, intron 5 of 5) intron (NM_001001890, intron 5 of 5) 49812 NR_038885 100506385 Hs.120179 NR_038885 ENSG00000234380 LINC01426 lincRNA-uc002yug.2 long intergenic non-protein coding RNA 1426 ncRNA 1.312 0.568 1.617 1.228 1.078 0.606 0.874 0.420 0.039 0.261 0.198 6.400 1.081 0.025 0.087 3.111 6.670 3.347 6.827 2.565 3.234 0.707 0.396 4.874 4.739 0.124 0.303 5.040 4.911 0.604 0.347 12.060 7.414 0.352 0.567 0.581 1.284 nan 0.957 0.199 1.089 0.023 0.467 0.874 6.400 0.608 0.410 5.776 0.483 2487 chr9 14421654 14439791 + 0 NA Intergenic AluSz6|SINE|Alu -31740 NM_001190738 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding nan nan 1.052 0.295 0.387 0.228 1.113 0.535 0.044 0.730 0.594 0.566 2.234 0.070 0.074 0.249 0.304 2.949 6.184 0.826 0.925 1.237 0.382 0.128 0.166 31.837 36.362 0.384 0.401 0.483 0.215 0.290 0.600 0.697 0.663 0.638 2.768 2.443 1.517 1.121 0.108 0.090 0.048 1.113 0.566 0.082 0.335 0.109 0.705 2219 chr7 5567198 5573210 + 0 NA promoter-TSS (NM_001101) promoter-TSS (NM_001101) 28 NM_001101 60 Hs.520640 NM_001101 ENSG00000075624 ACTB BRWS1|PS1TP5BP1 actin beta protein-coding 8.638 4.140 6.761 5.068 6.205 2.980 6.354 3.111 0.549 2.641 1.837 10.360 nan 9.008 0.228 4.239 8.036 3.856 nan 9.641 11.812 nan 2.094 16.302 17.526 3.815 5.960 nan 6.529 5.024 4.965 4.418 10.571 4.659 3.349 3.199 6.788 2.033 1.075 7.132 4.403 2.006 4.544 6.354 10.360 2.490 5.465 1.709 3.438 146 chr1 78440890 78451244 + 0 NA intron (NM_001317099, intron 1 of 3) intron (NM_001317099, intron 1 of 3) 199 NM_001317099 11080 Hs.13852 NM_007034 ENSG00000162616 DNAJB4 DNAJW|DjB4|HLJ1 DnaJ heat shock protein family (Hsp40) member B4 protein-coding nan 2.744 4.559 2.944 3.296 2.036 3.002 1.800 0.389 1.259 0.596 2.505 5.847 2.886 0.121 5.105 4.447 5.979 7.521 6.857 nan 5.545 3.714 12.098 12.835 4.710 nan 8.147 11.249 5.201 5.546 3.521 5.998 3.162 3.693 9.148 9.736 2.810 1.686 2.049 1.974 0.348 1.723 3.002 2.505 0.789 0.893 1.757 2.950 698 chr13 27578404 27592224 + 0 NA Intergenic Intergenic -114356 NR_046547 100874070 Hs.524923 NR_046547 USP12-AS1 - USP12 antisense RNA 1 ncRNA 1.017 0.886 1.401 0.814 0.205 0.147 0.381 0.109 0.128 0.149 0.209 1.387 1.061 0.039 0.062 1.540 2.910 0.235 nan 3.322 2.653 2.767 0.731 0.191 0.187 0.970 1.331 2.599 3.061 5.211 6.069 0.627 1.105 0.194 0.099 0.401 0.663 1.050 0.653 0.486 0.845 0.034 0.249 0.381 1.387 0.302 0.919 0.523 0.204 642 chr12 81076464 81080515 + 0 NA Intergenic Intergenic -22919 NM_002469 4618 Hs.35937 NM_002469 ENSG00000111046 MYF6 CNM3|MRF4|bHLHc4|myf-6 myogenic factor 6 protein-coding 0.884 0.771 0.633 0.088 0.838 0.593 0.182 0.093 0.620 0.340 0.587 0.224 0.028 0.079 3.559 3.352 1.934 0.896 0.402 0.498 0.261 0.136 0.323 0.449 0.357 0.464 3.315 3.695 0.241 0.078 0.156 0.212 9.579 12.972 0.262 0.488 0.527 0.472 0.027 0.066 1.533 0.020 0.587 0.025 0.125 1100 chr17 58101490 58115633 + 0 NA Intergenic Intergenic 11905 NR_039890 100616210 NR_039890 ENSG00000264049 MIR4737 - microRNA 4737 ncRNA 2.704 1.585 1.767 0.540 1.131 0.556 0.939 0.639 0.172 0.366 0.352 0.858 3.195 5.094 0.187 1.404 1.650 1.633 3.208 1.630 1.394 1.837 0.511 nan 3.048 0.981 1.533 nan nan 1.511 1.423 1.095 1.689 0.443 0.428 1.079 1.810 0.822 0.552 0.197 0.257 0.055 0.828 0.939 0.858 0.447 0.569 0.323 0.342 1924 chr4 154212005 154224841 + 0 NA intron (NM_001130067, intron 6 of 11) intron (NM_001130067, intron 6 of 11) 11540 NR_001562 303 Hs.546235 NR_001562 ANXA2P1 ANX2L1|ANX2P1|LPC2A annexin A2 pseudogene 1 pseudo nan 0.789 0.454 0.217 0.282 0.098 0.099 0.216 0.146 0.049 0.065 0.102 0.275 0.033 0.086 0.215 0.247 3.807 7.377 0.195 0.245 0.184 0.112 0.178 0.166 0.203 0.330 0.454 0.456 0.299 0.202 0.143 0.321 0.079 0.099 0.180 0.398 0.315 0.190 0.017 0.077 0.022 0.055 0.099 0.102 0.023 0.077 0.073 852 chr15 31584199 31604666 + 0 NA Intergenic Intergenic -24626 NM_001302461 51621 Hs.376443 NM_015995 ENSG00000169926 KLF13 BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1 Kruppel like factor 13 protein-coding 1.521 nan nan 1.374 3.368 1.689 1.709 0.139 0.047 2.369 1.311 3.785 3.516 0.048 0.053 4.659 6.700 0.386 0.545 4.691 4.818 4.026 1.304 0.703 0.665 0.450 0.682 0.694 1.430 6.160 7.245 2.117 2.647 4.697 2.984 0.959 1.942 0.535 0.311 0.889 1.034 1.769 1.913 1.709 3.785 1.370 0.392 1.723 0.744 2182 chr6 135583126 135595161 + 0 NA Intergenic Intergenic 28845 NR_030317 693126 NR_030317 ENSG00000207689 MIR548A2 MIRN548A2 microRNA 548a-2 ncRNA 0.866 1.224 2.855 1.292 2.979 1.685 0.478 0.050 0.094 0.468 0.358 4.541 0.801 0.090 0.113 1.028 0.855 2.243 3.378 4.908 5.114 6.813 1.937 1.513 1.689 0.205 0.363 2.560 1.542 0.588 0.237 0.500 0.557 0.690 0.590 0.270 nan 1.437 0.844 0.561 0.435 0.115 0.473 0.478 4.541 0.162 0.194 0.111 0.140 1915 chr4 106463395 106492910 + 0 NA intron (NM_001242729, intron 1 of 13) intron (NM_001242729, intron 1 of 13) 4375 NM_017700 54848 Hs.585224 NM_017700 ENSG00000236699 ARHGEF38 - Rho guanine nucleotide exchange factor 38 protein-coding 0.714 nan nan 1.033 1.768 0.911 0.394 0.151 0.082 0.543 0.370 1.451 0.550 0.040 0.064 1.067 1.222 4.007 nan 0.534 0.497 0.230 0.128 1.357 1.363 0.461 nan 0.679 0.790 0.404 0.162 0.539 0.739 1.388 1.515 0.262 nan 0.829 0.570 0.013 0.139 0.250 0.132 0.394 1.451 0.003 0.085 0.306 0.131 1763 chr3 35680689 35708150 + 0 NA intron (NM_016300, intron 1 of 19) intron (NM_016300, intron 1 of 19) 10570 NM_016300 10777 Hs.475902 NM_016300 ENSG00000172995 ARPP21 ARPP-21|R3HDM3|RCS|TARPP cAMP regulated phosphoprotein 21 protein-coding 0.800 1.478 0.764 0.143 0.161 0.123 0.153 0.098 0.035 0.080 0.100 0.048 0.947 0.027 0.085 0.371 0.332 0.181 0.257 0.726 0.612 0.136 0.071 0.283 0.301 4.065 nan 0.712 0.574 0.739 0.451 0.144 0.258 0.047 0.047 0.402 1.105 0.587 0.462 0.292 0.084 0.007 0.211 0.153 0.048 0.070 0.540 0.086 0.238 2602 chrX 153230983 153241626 + 0 NA TTS (NR_046608) TTS (NR_046608) 515 NM_005334 3054 Hs.83634 NM_005334 ENSG00000172534 HCFC1 CFF|HCF|HCF-1|HCF1|HFC1|MRX3|PPP1R89|VCAF host cell factor C1 protein-coding 5.075 4.125 5.811 3.792 9.214 4.585 6.320 1.379 0.091 1.383 0.559 4.580 8.689 1.877 0.043 8.162 8.210 4.513 6.273 10.214 9.679 6.886 5.155 15.622 16.585 2.598 3.462 6.692 9.831 9.043 9.738 4.366 6.228 4.756 5.613 7.942 5.863 2.418 1.419 4.007 9.378 1.152 4.110 6.320 4.580 1.207 1.830 2.052 2.610 1221 chr18 60796810 60830902 + 0 NA intron (NM_000633, intron 2 of 2) intron (NM_000633, intron 2 of 2) 172757 NM_000633 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2, apoptosis regulator protein-coding 0.830 0.797 1.813 2.213 1.703 0.796 0.431 0.227 0.071 0.606 0.260 1.593 5.463 0.045 0.066 2.158 2.517 2.415 2.209 2.155 1.994 2.810 0.823 9.049 nan 0.209 nan 5.022 4.505 0.469 0.293 2.574 3.780 1.136 1.849 0.141 0.183 5.175 2.814 1.873 2.426 0.322 0.572 0.431 1.593 0.302 1.570 3.699 0.051 1685 chr21 40262485 40300946 + 0 NA intron (NR_120405, intron 2 of 3) intron (NR_120405, intron 2 of 3) 28638 NR_120405 400867 Hs.689509 NR_120405 LOC400867 - uncharacterized LOC400867 ncRNA nan 0.907 0.934 0.947 1.426 0.782 0.313 0.445 0.143 0.325 0.181 3.421 3.393 0.048 0.074 0.347 0.276 0.598 0.729 1.267 1.470 nan 0.335 0.319 0.278 0.197 nan 6.873 6.172 0.471 0.193 0.179 0.277 0.320 0.288 0.134 0.217 3.122 1.457 0.612 1.134 0.042 0.080 0.313 3.421 0.043 2.411 0.068 0.050 2490 chr9 15507813 15514207 + 0 NA promoter-TSS (NM_001317898) promoter-TSS (NM_001317898) 7 NM_001128217 11168 Hs.658434 NM_021144 ENSG00000164985 PSIP1 DFS70|LEDGF|PAIP|PSIP2|p52|p75 PC4 and SFRS1 interacting protein 1 protein-coding nan 6.424 3.433 5.824 6.769 3.530 4.598 1.505 0.029 3.839 1.753 4.649 9.961 2.588 0.105 3.317 3.684 4.479 5.427 12.750 11.752 7.325 4.416 4.489 4.607 4.270 4.770 5.212 7.745 7.406 7.753 6.833 10.444 8.359 8.289 4.762 4.190 6.929 3.212 6.130 4.088 2.257 4.765 4.598 4.649 0.743 1.268 3.795 1.117 1568 chr20 2631606 2635141 + 0 NA promoter-TSS (NR_031699) promoter-TSS (NR_031699) -50 NR_031699 100302138 NR_031699 ENSG00000101361 MIR1292 MIRN1292|hsa-mir-1292|mir-1292 microRNA 1292 ncRNA 6.644 5.548 3.618 8.355 6.705 3.683 4.679 1.896 0.339 3.282 1.874 7.218 11.859 5.254 0.103 12.488 11.690 5.411 7.352 10.067 9.191 11.998 4.758 9.071 8.271 6.097 8.360 13.068 16.129 15.732 19.743 6.539 15.232 9.536 8.349 9.312 8.626 3.002 1.859 3.771 8.175 1.689 2.676 4.679 7.218 2.471 5.257 3.795 3.728 2425 chr8 128655923 128659434 + 0 NA Intergenic Intergenic 88535 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility candidate 11 (non-protein coding) ncRNA 22.474 11.806 20.608 0.459 1.114 0.374 0.145 0.215 0.045 0.179 0.166 0.102 nan 0.125 0.093 0.447 0.550 0.840 1.593 0.834 0.799 2.804 0.665 nan nan 43.817 45.785 5.708 6.518 95.099 80.157 0.491 1.080 2.879 2.683 52.647 68.564 0.869 0.585 0.063 0.397 1.226 0.873 0.145 0.102 7.950 0.224 0.553 85.790 1640 chr20 56142335 56153279 + 0 NA Intergenic Intergenic 11670 NM_002591 5105 Hs.1872 NM_002591 ENSG00000124253 PCK1 PEPCK-C|PEPCK1|PEPCKC phosphoenolpyruvate carboxykinase 1 protein-coding 1.672 1.762 0.688 0.088 0.805 0.397 1.391 0.111 0.087 0.208 0.165 0.098 0.259 0.108 0.092 1.012 nan 0.581 1.300 0.199 0.286 9.097 2.588 0.257 0.190 0.189 0.299 0.116 0.148 0.382 0.124 1.209 1.563 0.209 0.354 0.228 0.277 0.833 0.643 0.048 0.098 0.044 0.051 1.391 0.098 0.035 0.065 2.389 0.080 69 chr1 28968287 28976649 + 0 NA Intergenic AluSz|SINE|Alu -2644 NR_004407 26824 Hs.640266 NR_004407 ENSG00000270103 RNU11 RNU11-1|U11 RNA, U11 small nuclear snRNA 4.288 3.051 nan 5.982 3.843 1.606 3.200 2.033 0.617 1.835 1.155 1.735 7.999 3.300 0.172 7.100 7.043 5.590 7.890 8.897 8.656 5.862 3.979 11.988 13.068 5.675 6.569 5.502 8.111 7.821 7.841 6.235 6.894 3.259 3.545 6.560 8.521 3.802 2.093 4.597 3.627 0.363 1.347 3.200 1.735 1.054 1.948 2.121 2.863 2044 chr5 170813524 170818744 + 0 NA intron (NM_199185, intron 1 of 9) intron (NM_199185, intron 1 of 9) 1426 NM_001037738 4869 Hs.557550 NM_002520 ENSG00000181163 NPM1 B23|NPM nucleophosmin protein-coding 4.026 2.689 3.711 2.426 2.495 1.165 1.723 1.828 0.153 1.553 0.778 3.068 7.816 3.685 0.211 4.606 3.701 7.302 nan 6.260 6.389 5.141 3.229 6.002 6.459 3.702 nan 6.253 10.071 11.010 12.484 3.038 5.548 7.680 7.041 8.770 4.819 2.323 1.320 1.875 1.890 1.022 1.409 1.723 3.068 0.725 1.462 0.744 1.607 957 chr16 30660630 30672536 + 0 NA intron (NM_001320464, intron 8 of 11) intron (NM_001320464, intron 8 of 11) -4257 NM_001105079 64319 Hs.247186 NM_022452 ENSG00000156860 FBRS FBS|FBS1 fibrosin protein-coding 3.538 2.381 3.130 3.926 4.117 2.276 3.240 1.645 0.189 1.353 0.559 3.886 9.205 2.808 0.097 2.641 3.775 2.795 4.384 4.474 4.095 7.548 4.096 7.965 7.968 2.566 3.509 6.728 9.740 4.036 3.350 2.101 4.103 4.399 4.550 3.275 3.929 2.889 1.310 2.502 2.419 0.855 1.719 3.240 3.886 1.191 2.741 1.570 1.219 1708 chr22 23520876 23568486 + 0 NA intron (NM_021574, intron 1 of 21) L1MB3|LINE|L1 22129 NM_021574 613 Hs.517461 NM_004327 ENSG00000186716 BCR ALL|BCR1|CML|D22S11|D22S662|PHL BCR, RhoGEF and GTPase activating protein protein-coding 0.867 nan 2.061 1.267 0.620 0.356 0.638 0.203 0.084 0.337 0.269 3.603 3.102 0.205 0.088 0.630 1.002 0.605 0.876 3.832 3.873 1.032 0.259 1.033 0.971 0.936 1.514 3.740 4.153 1.555 1.243 0.667 1.132 0.695 1.088 0.764 2.108 1.788 1.114 2.550 1.496 0.287 1.107 0.638 3.603 0.235 0.346 0.791 0.517 221 chr1 159784133 159801556 + 0 NA Intergenic Intergenic -3635 NM_020125 56833 Hs.438683 NM_020125 ENSG00000158714 SLAMF8 BLAME|CD353|SBBI42 SLAM family member 8 protein-coding nan nan 3.492 0.344 7.360 3.809 0.360 0.102 0.055 0.817 0.326 1.783 0.457 0.013 0.101 0.433 0.514 0.475 0.490 2.058 nan 2.402 0.748 0.101 0.152 0.393 0.654 2.851 2.947 0.686 0.632 0.584 0.503 2.711 2.861 0.461 0.761 1.166 0.721 0.415 1.688 0.773 2.762 0.360 1.783 0.186 0.580 0.120 0.185 605 chr12 51610016 51621194 + 0 NA Intergenic AluSx|SINE|Alu -4066 NR_026893 5463 Hs.555886 NM_002702 ENSG00000184271 POU6F1 BRN5|MPOU|TCFB1 POU class 6 homeobox 1 protein-coding nan 1.818 1.544 0.902 1.256 0.616 1.164 0.832 0.221 1.280 0.764 1.693 2.472 1.282 0.098 nan 6.941 1.902 2.268 3.449 nan 3.022 1.085 4.894 5.100 1.637 nan 2.189 nan 2.576 2.732 1.837 3.394 2.225 1.731 1.635 2.028 1.798 1.258 0.534 1.990 0.390 1.039 1.164 1.693 0.532 1.151 2.750 0.666 1651 chr20 61846454 61859340 + 0 NA Intergenic Intergenic -5359 NM_017798 54915 Hs.744852 NM_017798 ENSG00000149658 YTHDF1 C20orf21 YTH N6-methyladenosine RNA binding protein 1 protein-coding 1.916 2.162 1.917 1.516 1.088 0.617 1.516 0.833 0.138 0.508 0.307 1.794 2.799 1.054 0.107 2.820 nan 1.427 1.825 2.880 2.716 3.390 1.216 4.732 4.466 1.324 1.914 1.638 2.510 2.148 2.091 1.628 2.389 0.701 0.768 1.171 1.204 1.881 1.221 5.777 2.343 0.097 0.445 1.516 1.794 0.443 1.746 0.337 0.338 1282 chr19 24167468 24185394 + 0 NA Intergenic Intergenic -39776 NM_001278663 9534 Hs.434406 NM_004876 ENSG00000213096 ZNF254 BMZF-5|HD-ZNF1|ZNF539|ZNF91L zinc finger protein 254 protein-coding nan 0.626 1.091 3.522 0.298 0.089 0.100 0.074 0.090 0.123 0.106 1.345 0.857 0.054 0.141 0.313 0.293 0.495 0.841 0.413 0.530 6.474 0.955 1.317 1.538 0.174 0.319 2.748 4.392 0.272 0.112 0.093 0.117 0.523 0.878 0.211 0.363 2.042 0.947 0.227 0.030 0.038 0.535 0.100 1.345 0.097 0.504 0.013 0.092 743 chr13 111789598 111807616 + 0 NA intron (NR_046516, intron 1 of 2) MER5A|DNA|hAT-Charlie 2305 NR_046516 100874226 Hs.577834 NR_046516 ARHGEF7-AS1 - ARHGEF7 antisense RNA 1 ncRNA 2.154 nan 3.113 2.113 1.062 0.516 1.794 0.460 0.110 0.661 0.312 3.847 1.722 0.431 0.074 2.289 2.174 1.318 1.984 3.842 3.981 2.800 1.311 1.101 1.237 0.190 0.339 3.132 4.013 1.274 1.253 1.383 2.104 1.741 2.009 1.269 1.047 0.515 0.327 0.712 1.432 0.696 2.331 1.794 3.847 0.306 1.267 0.352 0.274 2119 chr6 37785548 37788912 + 0 NA promoter-TSS (NM_021943) promoter-TSS (NM_021943) -77 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 8.598 5.485 nan 9.164 7.186 4.628 8.168 7.855 1.055 2.842 1.414 12.368 17.972 6.503 0.235 9.081 10.565 8.328 nan 12.097 11.222 13.567 5.941 16.146 16.893 5.799 7.286 12.612 17.077 6.542 6.733 3.627 6.626 8.254 9.277 4.862 6.816 3.258 1.622 8.054 7.499 2.923 4.370 8.168 12.368 3.461 4.065 2.534 2.036 244 chr1 173792069 173795053 + 0 NA promoter-TSS (NM_001171182) promoter-TSS (NM_001171182) 216 NM_033319 91687 Hs.531856 NM_033319 ENSG00000120334 CENPL C1orf155|CENP-L|dJ383J4.3 centromere protein L protein-coding 7.934 7.444 5.351 5.426 6.001 3.591 6.573 6.952 0.902 4.288 1.573 6.785 15.950 7.591 0.235 7.505 7.995 18.785 23.189 15.659 12.610 10.445 5.217 20.875 22.301 8.073 9.541 10.858 14.362 9.534 9.856 7.553 13.743 11.917 12.340 9.394 10.368 3.709 2.188 5.279 10.374 2.146 3.435 6.573 6.785 1.912 3.995 3.820 3.182 2021 chr5 139485661 139496222 + 0 NA Intergenic Intergenic -2767 NM_005859 5813 Hs.443121 NM_005859 ENSG00000185129 PURA MRD31|PUR-ALPHA|PUR1|PURALPHA purine rich element binding protein A protein-coding 2.851 2.799 nan 1.778 2.105 1.317 1.319 0.855 0.168 1.298 0.393 3.106 4.953 2.817 0.164 3.994 4.764 3.578 4.256 4.168 3.909 2.471 0.954 5.681 5.801 1.671 2.354 3.035 4.237 4.079 4.328 4.906 9.806 1.286 1.016 3.139 4.185 1.416 0.629 0.731 2.420 0.135 1.389 1.319 3.106 0.740 3.003 3.701 1.181 1582 chr20 17615264 17631752 + 0 NA intron (NM_004587, intron 4 of 24) intron (NM_004587, intron 4 of 24) 39420 NM_004587 6238 Hs.472213 NM_004587 ENSG00000125844 RRBP1 ES/130|ES130|RRp|hES ribosome binding protein 1 protein-coding 1.213 nan 1.829 0.397 0.548 0.360 0.372 0.498 0.127 0.571 0.270 0.431 1.569 0.067 0.046 1.019 1.330 0.372 0.503 3.792 2.931 1.098 0.390 0.636 0.605 0.593 1.029 4.279 4.196 2.351 2.272 0.466 0.580 0.245 0.167 0.710 1.241 3.200 1.986 3.730 1.211 0.064 0.039 0.372 0.431 0.467 1.858 0.073 0.462 889 chr15 74212522 74221931 + 0 NA intron (NR_040069, intron 1 of 2) intron (NR_040069, intron 1 of 2) -1573 NM_005576 4016 Hs.65436 NM_005576 ENSG00000129038 LOXL1 LOL|LOXL lysyl oxidase like 1 protein-coding 2.634 1.194 1.154 0.491 1.335 0.804 1.490 3.147 0.310 0.292 0.220 0.953 3.842 0.432 0.072 2.521 3.587 0.707 1.121 1.388 1.213 1.450 0.344 0.618 0.791 1.907 2.500 1.759 2.375 9.279 11.346 1.424 2.058 0.201 0.160 1.050 2.915 0.836 0.496 0.993 1.376 0.061 2.121 1.490 0.953 2.399 0.290 1.138 0.825 1348 chr19 48298577 48306282 + 0 NA Intergenic Intergenic 4432 NM_198479 284355 Hs.629812 NM_198479 ENSG00000178928 TPRX1 TPRX tetrapeptide repeat homeobox 1 protein-coding 1.091 0.771 1.144 0.113 0.344 0.265 0.100 0.078 0.126 0.142 0.031 0.062 0.218 0.107 0.146 0.229 0.160 0.222 0.308 0.334 0.460 0.355 0.165 0.274 0.229 0.242 0.459 0.212 0.229 0.881 0.456 0.215 0.203 0.114 0.052 2.809 10.668 0.367 0.482 0.032 0.035 0.038 0.042 0.100 0.062 0.034 0.064 5.119 1975 chr5 56467487 56473572 + 0 NA promoter-TSS (NM_001127235) promoter-TSS (NM_001127235) -746 NM_001127235 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding nan 5.304 3.984 2.547 4.525 2.306 2.695 3.500 0.257 1.345 0.685 1.551 7.215 3.976 0.148 3.227 3.087 9.106 13.983 5.720 4.856 nan 4.206 9.794 9.966 3.622 4.591 3.790 7.885 nan 7.664 2.624 5.522 5.069 6.981 6.584 5.824 1.874 1.076 1.570 5.891 0.969 2.126 2.695 1.551 0.703 2.092 1.664 2.098 1274 chr19 18051964 18064110 + 0 NA Intergenic Intergenic -4074 NM_002248 3780 Hs.158173 NM_002248 ENSG00000105642 KCNN1 KCa2.1|SK1|SKCA1|hSK1 potassium calcium-activated channel subfamily N member 1 protein-coding 2.553 1.375 1.675 0.730 3.637 1.850 1.694 0.202 0.080 0.323 0.252 2.795 2.226 0.502 0.094 0.974 1.086 0.456 0.656 7.382 5.903 1.983 0.680 0.479 0.460 1.305 1.687 1.943 3.887 4.035 3.697 0.319 0.399 2.747 2.131 4.072 6.061 1.341 0.767 4.197 2.158 0.558 1.058 1.694 2.795 2.204 0.223 0.138 2.796 2029 chr5 149010640 149014335 + 0 NA 3' UTR (NM_001001669, exon 13 of 13) 3' UTR (NM_001001669, exon 13 of 13) 51352 NM_001001669 389337 Hs.256206 NM_001001669 ENSG00000183111 ARHGEF37 - Rho guanine nucleotide exchange factor 37 protein-coding nan 1.981 0.678 0.316 0.244 0.130 0.167 0.062 0.132 0.093 0.023 0.097 0.990 0.089 0.086 1.442 1.512 13.869 9.828 0.209 0.224 5.289 0.593 1.998 2.321 0.244 0.415 2.328 3.146 0.460 0.155 1.049 1.354 0.744 0.958 0.235 0.241 1.305 0.644 0.362 0.453 0.086 0.167 0.097 0.443 0.508 0.067 1671 chr21 34660977 34698460 + 0 NA Intergenic LTR47B|LTR|ERVL -17496 NM_000629 3454 Hs.529400 NM_000629 ENSG00000142166 IFNAR1 AVP|IFN-alpha-REC|IFNAR|IFNBR|IFRC interferon alpha and beta receptor subunit 1 protein-coding 1.386 1.029 1.561 0.969 0.815 0.436 0.547 0.339 0.064 0.373 0.218 0.902 2.305 0.353 0.085 0.931 1.046 0.973 1.286 1.977 1.644 1.136 0.427 1.460 1.479 0.687 1.065 3.559 3.045 1.722 1.491 0.591 0.914 1.071 1.038 0.886 1.245 nan 1.206 0.559 0.925 0.221 0.346 0.547 0.902 0.332 0.895 0.316 0.474 1958 chr5 34179124 34194846 + 0 NA Intergenic Intergenic -62352 NR_037951 100534612 Hs.171929 NR_037951 ENSG00000273294 C1QTNF3-AMACR - C1QTNF3-AMACR readthrough (NMD candidate) ncRNA 3.939 5.105 8.971 1.651 1.231 0.688 0.510 1.655 0.913 1.588 1.167 1.385 2.061 0.495 0.508 2.157 1.884 1.794 1.881 2.139 2.585 2.273 0.922 1.751 1.796 3.501 4.909 2.603 3.177 2.963 2.133 1.762 2.404 1.324 1.739 0.859 1.966 4.316 3.041 0.279 0.604 0.626 0.999 0.510 1.385 0.563 0.741 0.352 0.438 148 chr1 87858159 87867696 + 0 NA Intergenic Intergenic -25589 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 1.517 nan nan 3.199 5.407 2.708 0.364 0.119 0.033 0.890 0.303 0.460 3.905 0.062 0.142 0.288 0.400 0.482 0.838 1.252 1.426 2.182 0.847 0.315 0.327 1.702 2.157 3.290 2.957 0.500 0.336 0.307 0.834 4.122 5.699 0.484 0.861 2.123 1.283 1.033 1.417 0.930 0.074 0.364 0.460 0.057 1.322 0.604 1376 chr19 56158516 56170395 + 0 NA promoter-TSS (NM_007279) promoter-TSS (NM_007279) -961 NM_001012478 11338 Hs.528007 NM_007279 ENSG00000063244 U2AF2 U2AF65 U2 small nuclear RNA auxiliary factor 2 protein-coding 4.477 2.702 4.183 3.452 6.261 3.728 2.940 1.873 0.231 2.190 1.294 3.869 5.196 4.499 0.161 7.162 7.770 4.258 6.412 8.458 9.182 6.157 5.358 6.480 6.972 4.977 6.039 5.631 8.828 9.642 8.583 5.953 9.196 5.058 6.314 6.702 6.164 3.707 1.821 4.055 5.086 1.483 2.635 2.940 3.869 1.668 2.459 3.219 2.869 1206 chr18 53244058 53258564 + 0 NA intron (NM_001330604, intron 3 of 19) intron (NM_001330604, intron 3 of 19) 2039 NM_001306207 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding nan 0.858 0.919 1.315 2.518 1.426 3.358 1.353 0.045 1.267 0.907 2.915 3.429 3.939 0.126 2.271 3.131 4.274 3.993 8.036 6.297 10.368 4.541 6.112 6.151 2.388 3.008 1.902 2.741 2.817 3.388 2.164 3.359 6.051 5.446 1.831 1.949 nan 2.724 0.665 1.907 1.558 2.209 3.358 2.915 0.622 3.803 1.802 0.835 2145 chr6 51082588 51087552 + 0 NA Intergenic Intergenic 298631 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 0.848 0.849 nan 0.175 0.387 0.227 0.077 0.091 0.096 0.062 0.113 0.749 0.497 0.033 0.090 2.180 1.970 9.790 8.384 0.320 0.426 0.127 0.108 2.363 2.414 0.138 0.323 0.216 0.257 0.109 0.048 0.367 0.913 0.344 0.445 0.348 0.405 0.183 0.292 0.044 0.035 0.076 0.109 0.077 0.749 0.038 0.020 0.371 0.150 13 chr1 6256045 6270425 + 0 NA Intergenic AluSx|SINE|Alu 2605 NR_125997 102724450 Hs.669107 NR_125997 ENSG00000226944 LOC102724450 - uncharacterized LOC102724450 ncRNA 2.605 nan 1.834 0.378 1.733 0.747 0.726 0.967 0.180 0.640 0.355 0.827 2.979 3.914 0.212 2.424 2.049 1.648 2.202 2.722 3.570 2.288 0.983 4.372 4.361 1.905 nan nan 9.211 nan 3.378 1.996 2.903 1.061 1.094 3.508 4.859 1.758 0.822 1.380 0.878 0.212 0.408 0.726 0.827 0.472 1.308 0.703 1.765 1522 chr2 206944155 206952689 + 0 NA intron (NM_017759, intron 1 of 10) intron (NM_017759, intron 1 of 10) 2484 NM_017759 54891 Hs.445036 NM_017759 ENSG00000114933 INO80D - INO80 complex subunit D protein-coding 3.664 nan 3.838 3.535 4.122 2.218 4.315 2.367 0.321 1.546 0.896 5.528 7.957 3.010 0.124 4.388 5.646 4.893 7.130 5.512 6.825 3.074 2.613 17.255 17.771 3.426 4.142 5.999 9.539 6.045 5.852 4.084 7.746 2.873 2.300 5.599 4.394 1.957 0.933 1.841 1.961 0.762 2.567 4.315 5.528 1.158 2.144 2.017 1.951 657 chr12 106838209 106842232 + 0 NA intron (NM_001160708, intron 19 of 27) (A)n|Simple_repeat|Simple_repeat 88360 NM_001160708 55703 Hs.62696 NM_018082 ENSG00000013503 POLR3B C128|HLD8|INMAP|RPC2 RNA polymerase III subunit B protein-coding 0.916 0.875 nan 2.850 8.267 3.918 0.544 0.112 0.079 2.137 0.723 2.174 0.936 0.168 0.131 0.325 0.360 0.438 0.572 3.917 2.623 13.283 12.955 0.537 0.402 0.515 0.744 0.428 0.823 0.331 0.133 2.146 3.204 3.125 3.801 0.293 0.534 5.982 3.049 0.068 0.883 0.424 0.468 0.544 2.174 3.226 2.206 0.090 1048 chr17 33401554 33428302 + 0 NA intron (NR_037713, intron 1 of 6) intron (NR_037713, intron 1 of 6) 1420 NR_037713 117584 Hs.13680 NM_057178 ENSG00000092871 RFFL CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L ring finger and FYVE like domain containing E3 ubiquitin protein ligase protein-coding nan 1.302 0.886 0.192 0.847 0.406 0.623 0.412 0.163 0.639 0.325 0.756 1.509 0.408 0.112 1.780 1.423 1.369 1.437 nan 1.027 2.117 0.620 1.400 1.370 0.717 1.070 0.940 1.280 nan 0.366 0.393 0.633 1.562 3.147 0.246 0.534 1.557 0.893 0.419 0.420 0.297 0.176 0.623 0.756 0.211 0.685 0.189 0.073 795 chr14 57342704 57373142 + 0 NA intron (NR_029385, intron 1 of 3) intron (NR_029385, intron 1 of 3) 78022 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA nan nan 2.543 0.252 0.701 0.374 0.425 0.100 0.058 0.077 0.128 0.285 0.401 0.050 0.124 0.417 0.291 1.813 1.052 0.350 0.395 0.484 0.149 0.414 0.505 0.144 0.222 0.321 0.375 0.973 0.541 0.252 0.406 0.198 0.334 3.352 10.787 nan 0.551 0.036 0.140 0.041 0.114 0.425 0.285 0.057 0.030 0.189 2.237 1248 chr19 2962175 2988380 + 0 NA Intergenic AluSz|SINE|Alu -2254 NR_138612 79816 Hs.334507 NM_024760 ENSG00000104953 TLE6 GRG6|PREMBL transducin like enhancer of split 6 protein-coding 1.037 2.085 1.791 0.778 1.568 0.896 1.739 0.641 0.394 0.640 0.409 2.698 5.036 0.265 0.088 0.555 1.175 0.455 0.812 3.184 3.399 1.661 0.539 0.224 0.207 1.415 1.827 2.369 nan 1.755 1.563 0.277 0.351 1.695 1.493 0.478 1.144 2.343 1.177 2.694 1.629 0.446 0.112 1.739 2.698 0.263 1.616 0.136 0.247 2561 chr9 135416524 135425440 + 0 NA intron (NM_207417, intron 6 of 6) intron (NM_207417, intron 6 of 6) -37011 NM_020064 56751 Hs.283809 NM_020064 ENSG00000125492 BARHL1 - BarH like homeobox 1 protein-coding nan 0.690 1.286 0.806 0.598 0.215 1.484 0.093 0.054 0.352 0.283 0.831 1.001 0.049 0.083 1.227 1.882 0.371 0.557 1.743 1.596 nan 0.095 0.281 0.338 0.790 0.896 0.687 1.235 1.562 1.513 0.910 0.919 6.455 6.060 0.903 1.625 1.428 0.836 0.275 0.109 1.880 1.477 1.484 0.831 0.980 0.172 0.999 0.264 1050 chr17 34979836 34987683 + 0 NA Intergenic Intergenic 25734 NM_024864 79922 Hs.194864 NM_024864 ENSG00000278619 MRM1 - mitochondrial rRNA methyltransferase 1 protein-coding nan 1.758 1.264 0.358 8.402 4.411 0.621 0.077 0.061 1.964 1.097 4.247 1.030 0.069 0.086 0.490 0.573 0.171 0.333 nan 5.357 3.132 2.256 0.354 0.531 0.259 0.542 2.852 4.310 nan 0.694 0.531 0.697 2.332 1.091 0.331 0.605 2.531 1.779 2.217 2.798 0.839 0.040 0.621 4.247 0.714 3.259 0.263 0.144 1817 chr3 137892152 137915685 + 0 NA Intergenic Intergenic -2172 NM_213654 25852 Hs.744868 NM_014154 ENSG00000114098 ARMC8 GID5|HSPC056|S863-2|VID28 armadillo repeat containing 8 protein-coding 2.447 nan nan 1.558 1.432 0.807 0.824 0.839 0.246 0.978 0.676 1.075 1.615 0.627 0.086 1.887 1.972 1.811 2.559 2.643 2.496 4.934 1.849 3.090 3.370 2.144 2.778 1.572 2.122 nan 3.194 1.397 2.351 0.848 0.850 1.616 2.092 1.472 0.857 0.953 0.865 0.177 0.782 0.824 1.075 0.322 0.587 0.528 0.522 2160 chr6 100998211 101015175 + 0 NA intron (NM_006828, intron 36 of 41) intron (NM_006828, intron 36 of 41) -95142 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 single-minded family bHLH transcription factor 1 protein-coding 1.091 nan nan 0.541 0.615 0.521 0.318 0.158 0.142 0.609 0.602 0.297 0.495 0.069 0.109 0.457 0.322 0.186 0.256 0.440 nan 0.844 0.431 0.516 0.422 0.711 0.925 0.362 0.378 nan 0.104 0.187 0.197 4.118 4.744 0.900 2.889 0.696 0.315 0.016 0.094 1.949 0.078 0.318 0.297 0.023 0.309 0.081 0.715 2121 chr6 41038070 41043931 + 0 NA promoter-TSS (NM_001329685) promoter-TSS (NM_001329685) 293 NM_002505 4800 Hs.10441 NM_002505 ENSG00000001167 NFYA CBF-A|CBF-B|HAP2|NF-YA nuclear transcription factor Y subunit alpha protein-coding 6.222 4.438 5.186 7.667 6.904 3.311 6.341 4.080 0.302 3.138 1.539 8.212 11.943 5.389 0.185 5.664 7.617 5.974 9.456 10.748 9.276 13.777 7.942 16.150 16.807 4.587 5.815 12.844 17.092 7.323 7.872 2.695 5.675 7.057 7.294 7.230 8.634 4.024 1.928 5.815 5.287 1.257 3.530 6.341 8.212 1.638 3.464 2.312 3.120 2361 chr8 53153225 53169856 + 0 NA intron (NM_014682, intron 2 of 25) intron (NM_014682, intron 2 of 25) 54618 NR_134310 101929341 Hs.147170 NR_134310 ENSG00000253551 LOC101929341 - uncharacterized LOC101929341 ncRNA 4.082 nan 1.991 5.022 6.322 3.615 1.586 0.095 0.087 3.853 1.880 5.430 8.696 0.026 0.108 0.524 0.988 0.478 0.677 11.490 11.369 6.185 3.962 0.482 0.483 5.642 nan 3.094 4.741 8.235 8.999 1.053 2.000 6.980 6.193 3.409 5.484 5.121 2.808 0.020 4.737 1.598 0.544 1.586 5.430 1.261 2.814 1.284 1.015 1214 chr18 56448441 56485544 + 0 NA Intergenic AluSx1|SINE|Alu -62840 NM_001318726 55205 Hs.529023 NM_018181 ENSG00000074657 ZNF532 - zinc finger protein 532 protein-coding nan 1.322 0.920 0.422 0.478 0.237 2.447 0.138 0.164 0.186 0.137 3.185 0.859 0.210 0.095 0.715 0.662 1.747 2.127 1.615 1.723 3.518 1.237 0.690 0.704 0.430 0.640 0.556 0.635 0.673 0.451 0.292 0.364 1.166 1.479 0.432 1.012 nan 1.433 0.318 0.228 0.355 0.593 2.447 3.185 0.148 0.116 0.090 0.229 1506 chr2 182531956 182562726 + 0 NA Intergenic Intergenic -1949 NM_002500 4760 Hs.574626 NM_002500 ENSG00000162992 NEUROD1 BETA2|BHF-1|MODY6|NEUROD|bHLHa3 neuronal differentiation 1 protein-coding 4.182 1.010 1.768 0.319 0.488 0.286 0.354 0.106 0.068 0.198 0.212 0.451 0.682 0.025 0.071 0.304 0.248 0.159 0.136 0.320 0.445 1.817 0.822 0.251 0.266 nan 7.067 0.884 1.114 11.325 15.320 0.111 0.247 0.663 0.628 3.952 nan 0.415 0.334 0.483 0.047 0.176 0.314 0.354 0.451 0.850 0.063 0.052 2.490 2353 chr8 38028543 38036280 + 0 NA intron (NR_045493, intron 1 of 3) AluSx1|SINE|Alu -1695 NM_004874 9530 Hs.194726 NM_004874 ENSG00000156735 BAG4 BAG-4|SODD BCL2 associated athanogene 4 protein-coding 2.511 2.221 nan 9.212 2.901 1.472 1.637 1.653 0.292 1.395 0.804 3.250 5.879 2.877 0.181 3.892 3.685 3.592 5.744 5.926 5.317 4.379 1.678 6.959 7.425 2.763 3.271 2.819 4.082 4.120 3.851 1.369 3.818 2.389 3.091 3.542 4.164 2.885 1.316 1.534 2.084 0.601 0.656 1.637 3.250 0.701 1.950 1.113 1.562 1492 chr2 166418933 166435318 + 0 NA intron (NM_001172173, intron 3 of 6) intron (NM_001172173, intron 3 of 6) -1721 NM_024969 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 0.995 1.173 nan 1.275 1.255 0.606 1.686 0.344 0.039 1.128 0.702 0.622 2.838 0.041 0.066 2.397 2.893 2.017 2.325 1.014 0.995 2.991 1.644 1.682 1.590 4.145 4.306 1.261 1.292 2.963 2.368 1.439 2.602 0.054 0.012 1.375 2.025 1.528 0.717 0.044 1.688 0.006 0.341 1.686 0.622 0.279 0.390 1.865 0.218 865 chr15 50644786 50649589 + 0 NA promoter-TSS (NR_026891) promoter-TSS (NR_026891) -111 NR_026891 55056 Hs.511316 NM_017976 ENSG00000104064 FLJ10038 - uncharacterized protein FLJ10038 ncRNA 8.065 5.229 8.174 5.594 7.913 4.805 7.253 6.189 0.486 4.152 2.036 8.703 9.673 6.248 0.180 12.105 10.144 11.613 16.381 10.992 10.785 9.455 5.955 17.676 18.006 8.963 9.972 10.267 17.364 20.373 21.199 10.916 14.975 11.689 13.916 13.529 9.401 5.443 3.386 4.060 4.165 1.900 3.452 7.253 8.703 2.412 4.502 3.611 4.032 975 chr16 53074547 53080295 + 0 NA intron (NR_136518, intron 2 of 2) intron (NR_136518, intron 2 of 2) 9364 NR_136518 105371267 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA nan nan nan 0.184 0.315 0.362 0.536 0.183 0.028 0.136 0.123 0.104 1.187 0.133 0.039 4.765 11.789 0.750 1.071 0.453 0.403 0.364 0.189 1.689 1.732 2.790 nan nan nan nan 0.462 1.740 3.370 0.138 0.115 0.309 nan nan 0.545 0.431 0.079 0.536 0.104 1.184 0.104 2.167 0.110 986 chr16 79023704 79049238 + 0 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 598151 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 0.594 0.724 nan 2.716 4.580 2.399 0.568 0.044 0.031 0.589 0.256 2.791 1.405 0.017 0.064 0.309 0.216 0.390 1.511 0.897 0.907 3.659 1.342 0.339 0.294 0.074 0.147 3.284 4.287 0.793 0.616 0.112 0.181 0.002 0.002 0.191 0.308 3.896 1.748 1.710 1.768 0.007 0.183 0.568 2.791 0.373 0.056 0.027 0.053 1908 chr4 90720093 90725873 + 0 NA intron (NM_000345, intron 4 of 5) intron (NM_000345, intron 4 of 5) -34569 NR_045481 644248 Hs.553954 NR_045481 ENSG00000247775 SNCA-AS1 - SNCA antisense RNA 1 ncRNA 0.745 0.736 0.650 0.210 0.384 0.222 0.145 0.678 0.056 0.125 0.041 0.212 0.039 0.085 1.444 1.634 9.374 6.196 0.303 0.294 0.156 0.067 4.008 3.667 0.466 0.813 0.404 0.348 0.361 0.177 1.332 2.289 0.138 0.099 0.183 0.552 0.371 0.420 0.059 0.140 0.066 0.055 0.145 0.041 0.033 0.082 0.718 0.064 687 chr12 132457094 132489053 + 0 NA intron (NM_015409, intron 7 of 52) intron (NM_015409, intron 7 of 52) 38608 NM_015409 57634 Hs.723478 NM_015409 ENSG00000183495 EP400 CAGH32|P400|TNRC12 E1A binding protein p400 protein-coding 0.826 0.723 0.697 0.455 0.361 0.176 0.882 0.102 0.128 0.235 0.206 0.172 0.438 0.106 0.133 0.371 0.433 0.436 0.519 1.052 0.987 2.028 0.503 0.434 0.400 0.452 0.690 nan 0.611 0.446 0.318 0.228 0.371 0.359 0.774 0.273 0.610 1.481 0.905 0.085 0.282 0.039 15.450 0.882 0.172 0.250 0.075 0.086 0.101 741 chr13 111558523 111570879 + 0 NA intron (NR_104586, intron 1 of 4) intron (NR_104586, intron 1 of 4) 2753 NM_017664 55608 Hs.525163 NM_017664 ENSG00000088448 ANKRD10 - ankyrin repeat domain 10 protein-coding 2.749 nan 2.944 4.054 3.258 1.621 3.430 1.503 0.156 0.916 0.494 2.499 4.969 1.674 0.105 6.379 6.390 7.166 13.378 4.315 4.140 5.557 2.041 4.475 4.289 0.663 0.770 4.013 6.273 3.245 3.884 3.060 6.650 3.781 4.382 3.771 3.374 0.490 0.336 3.337 5.049 0.918 3.906 3.430 2.499 0.565 2.013 1.723 0.794 430 chr11 34605938 34613383 + 0 NA Intergenic Intergenic -32928 NM_001206615 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 0.651 1.311 nan 0.189 0.596 0.324 0.379 0.201 0.108 0.183 0.184 1.084 1.523 0.014 0.126 1.235 1.279 6.985 6.163 0.401 0.724 2.934 0.797 0.662 0.732 0.344 0.550 0.348 0.322 0.469 0.173 0.573 0.721 0.185 0.237 0.135 nan 0.717 0.622 0.105 0.116 0.032 0.379 1.084 0.017 0.031 0.096 0.016 2140 chr6 45515203 45547430 + 0 NA Intergenic Intergenic 141002 NM_001278478 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA runt related transcription factor 2 protein-coding 1.507 0.869 0.798 0.206 0.334 0.154 0.195 0.615 0.141 0.063 0.107 0.171 0.327 0.057 0.111 0.987 0.787 1.758 6.396 0.337 0.294 0.114 0.060 0.625 0.649 0.121 0.216 0.862 nan 0.384 0.209 0.354 0.503 0.095 0.106 0.481 1.405 0.541 0.585 0.160 0.102 0.020 0.104 0.195 0.171 0.018 0.081 0.209 0.337 58 chr1 24642998 24652625 + 0 NA intron (NM_001195010, intron 1 of 15) intron (NM_001195010, intron 1 of 15) -1719 NM_021180 57822 Hs.657920 NM_021180 ENSG00000158055 GRHL3 SOM|TFCP2L4|VWS2 grainyhead like transcription factor 3 protein-coding 1.007 1.528 nan 0.955 0.747 0.267 1.118 1.674 0.118 0.036 0.087 0.462 2.495 0.045 0.104 0.439 0.491 2.330 9.400 1.215 1.239 0.729 0.140 0.705 0.860 0.215 0.429 2.702 3.136 0.308 0.230 0.606 0.704 0.451 0.407 0.299 0.456 0.372 0.395 0.924 0.939 0.040 0.116 1.118 0.462 0.151 0.206 0.064 713 chr13 52351926 52397369 + 0 NA intron (NM_001031719, intron 1 of 7) intron (NM_001031719, intron 1 of 7) 3651 NM_001031719 79758 Hs.266728 NM_024705 ENSG00000102796 DHRS12 SDR40C1 dehydrogenase/reductase 12 protein-coding 1.579 nan nan 0.402 0.550 0.265 0.637 0.384 0.075 0.257 0.145 1.644 1.742 0.257 0.071 1.415 1.845 0.397 0.681 2.404 2.328 nan 0.611 0.867 0.912 0.767 1.036 1.083 1.509 2.454 2.683 0.755 1.099 0.869 0.849 2.047 nan 0.479 0.291 0.881 1.999 0.174 0.664 0.637 1.644 1.198 0.245 0.310 1.188 448 chr11 57069871 57104245 + 0 NA intron (NM_033396, intron 3 of 11) AluSq2|SINE|Alu 5355 NM_033396 85456 Hs.530730 NM_033396 ENSG00000149115 TNKS1BP1 TAB182 tankyrase 1 binding protein 1 protein-coding 1.335 1.220 1.208 1.355 1.304 0.846 1.307 1.295 0.121 0.625 0.326 1.844 2.765 1.507 0.121 2.252 2.357 1.705 2.606 3.285 3.367 1.741 0.875 2.437 2.320 1.434 1.999 3.483 4.371 1.407 1.351 1.196 1.985 1.185 1.112 1.028 1.914 1.681 0.728 1.271 1.259 0.304 0.466 1.307 1.844 0.656 1.234 0.602 0.351 380 chr10 124891741 124916470 + 0 NA Intergenic Intergenic -3533 NM_005519 3167 Hs.444756 NM_005519 ENSG00000188816 HMX2 H6L|Nkx5-2 H6 family homeobox 2 protein-coding nan 0.959 0.777 0.700 3.178 1.653 0.714 0.629 0.137 0.282 0.146 2.029 1.916 0.981 0.088 10.109 16.917 7.332 9.026 1.446 1.118 2.516 1.065 0.805 0.862 0.730 1.033 1.105 1.399 0.717 0.746 5.543 12.880 0.381 0.541 0.363 0.690 0.587 0.338 0.546 0.391 0.084 0.421 0.714 2.029 0.181 0.456 4.261 0.199 54 chr1 23693617 23704901 + 0 NA TTS (NR_033690) TTS (NR_033690) -2902 NM_001077195 80818 Hs.293798 NM_030634 ENSG00000125945 ZNF436 ZNF|Zfp46 zinc finger protein 436 protein-coding 3.752 2.971 nan 4.455 2.708 1.372 2.475 0.860 0.367 1.009 0.701 1.033 10.856 2.372 0.177 1.732 2.290 2.425 3.928 5.165 5.096 4.103 1.105 4.037 4.313 3.801 5.021 3.463 4.149 2.453 2.610 1.155 2.770 2.319 3.130 3.019 5.246 1.606 0.930 3.231 1.849 0.826 1.744 2.475 1.033 0.979 1.265 0.712 1.942 724 chr13 74092353 74103051 + 0 NA Intergenic Intergenic -40679 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA nan 1.717 0.585 0.107 0.413 0.165 0.349 0.119 0.089 0.044 0.031 0.141 2.608 0.050 0.059 0.550 0.350 0.263 0.413 0.590 0.589 nan 0.175 0.087 0.133 0.058 0.078 0.269 0.374 nan 0.160 0.246 0.387 0.059 0.109 0.350 nan 0.180 0.175 0.488 4.918 0.127 0.349 0.141 0.009 0.057 0.055 0.023 629 chr12 58144491 58150990 + 0 NA Intergenic Intergenic -1141 NM_138396 92979 Hs.632709 NM_138396 ENSG00000139266 MARCH9 MARCH-IX|RNF179 membrane associated ring-CH-type finger 9 protein-coding nan 2.775 2.417 4.162 4.713 2.418 4.244 2.069 0.197 2.723 1.129 5.244 7.372 1.238 0.069 nan 4.241 3.118 4.515 6.304 nan 6.404 2.896 5.259 5.880 3.602 nan 10.613 14.488 4.938 5.173 2.258 4.065 4.373 5.119 4.948 6.877 4.650 2.230 1.201 5.792 1.025 1.321 4.244 5.244 1.415 2.582 1.541 1.545 102 chr1 42792635 42811991 + 0 NA promoter-TSS (NM_001198850) promoter-TSS (NM_001198850) -765 NM_001198850 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 19.941 3.672 nan 5.896 6.993 3.401 1.838 0.771 0.167 4.244 2.020 11.308 9.114 0.964 0.134 0.887 1.045 1.151 1.787 6.202 6.914 5.777 2.219 2.379 2.373 2.448 nan nan 11.039 2.725 2.472 1.762 nan 3.043 3.785 4.032 9.031 3.977 1.736 6.337 3.603 1.180 0.962 1.838 11.308 0.387 2.433 0.917 3.914 1927 chr4 185296310 185325772 + 0 NA intron (NM_002199, intron 8 of 8) intron (NM_002199, intron 8 of 8) -7581 NR_125934 102723766 Hs.432281 NR_125933 ENSG00000249096 LOC102723766 - uncharacterized LOC102723766 ncRNA nan 1.033 nan 0.178 0.304 0.190 1.594 1.379 0.104 0.144 0.085 0.679 0.996 0.037 0.064 0.735 0.614 4.249 5.811 1.116 1.026 0.533 0.106 0.203 0.206 0.071 0.142 0.845 0.992 0.307 0.178 1.247 1.649 0.334 0.490 0.149 0.257 0.599 0.491 0.531 1.423 0.052 0.318 1.594 0.679 0.049 0.097 1.415 0.101 32 chr1 9870707 9936068 + 0 NA Intergenic Intergenic -18803 NM_014944 22883 Hs.29665 NM_014944 ENSG00000171603 CLSTN1 ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2 calsyntenin 1 protein-coding 1.937 nan 1.683 2.184 0.683 0.324 0.777 0.253 0.187 0.461 0.230 0.521 3.757 0.271 0.115 0.835 1.200 0.521 0.791 1.533 1.532 0.498 0.161 0.621 0.629 2.401 nan nan 3.922 nan 2.106 0.403 0.562 0.460 0.424 1.726 3.882 1.607 0.876 2.189 0.447 0.125 0.190 0.777 0.521 0.715 0.451 0.134 0.901 2235 chr7 19134467 19157736 + 0 NA Intergenic CpG 11194 NM_000474 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding nan 0.862 nan 0.241 0.178 0.108 0.599 5.129 0.451 0.290 0.309 0.080 1.786 1.816 0.159 nan 0.202 3.627 3.923 0.941 0.957 1.145 0.330 2.205 2.308 0.963 1.412 0.370 0.395 1.000 0.897 0.076 0.102 3.056 2.264 0.144 0.372 0.738 0.666 0.019 0.181 0.688 0.030 0.599 0.080 0.048 0.381 0.017 0.079 2495 chr9 22330682 22346699 + 0 NA Intergenic Intergenic -108150 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 0.970 nan nan 0.220 0.157 0.110 0.184 0.544 0.101 0.138 0.122 0.082 0.266 0.013 0.105 0.168 0.104 0.192 0.342 0.281 0.347 0.636 0.216 0.064 0.050 3.991 4.934 0.109 0.133 1.183 0.710 0.159 0.239 1.271 2.255 0.256 0.573 1.313 0.842 0.018 0.062 0.457 0.085 0.184 0.082 0.056 0.031 0.146 2157 chr6 85469551 85487380 + 0 NA Intergenic Intergenic -4511 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 CAKUT2 T-box 18 protein-coding 0.576 0.577 nan 0.498 0.215 0.154 0.949 0.947 0.252 0.885 0.565 0.054 0.232 0.453 0.103 0.193 0.065 0.955 1.587 0.141 0.181 1.792 0.716 1.067 1.151 0.143 0.274 0.563 0.615 0.309 0.127 0.120 0.122 0.063 0.110 0.091 0.195 0.134 0.174 0.022 0.029 0.016 0.009 0.949 0.054 0.016 3.817 0.011 0.048 509 chr11 100689112 100707591 + 0 NA intron (NM_152432, intron 3 of 23) LTR78|LTR|ERV1 -139665 NR_133571 100128386 Hs.635125 NR_133571 ENSG00000248027 LOC100128386 - uncharacterized LOC100128386 ncRNA 0.944 1.018 0.821 0.048 0.402 0.193 0.276 0.945 0.017 0.068 0.144 0.045 0.747 0.041 0.105 0.767 0.553 0.434 0.738 0.446 0.479 0.147 0.095 0.512 0.551 3.219 4.108 0.177 0.160 0.532 0.249 0.245 0.310 0.444 0.380 0.331 0.966 2.214 1.150 0.015 0.132 0.036 0.254 0.276 0.045 0.331 0.307 0.096 0.224 781 chr14 37323309 37329054 + 0 NA intron (NM_030631, intron 2 of 9) intron (NM_030631, intron 2 of 9) 95415 NR_039725 100616280 NR_039725 ENSG00000266327 MIR4503 - microRNA 4503 ncRNA 1.211 0.787 0.897 7.466 0.226 0.140 0.112 0.125 0.140 1.065 0.490 1.206 3.494 0.057 0.073 0.219 0.206 0.202 0.366 0.522 0.741 3.396 0.725 0.256 0.240 0.245 0.502 8.119 9.835 0.478 0.238 0.180 0.347 1.344 1.569 0.117 0.204 1.437 0.960 0.649 0.231 0.513 0.033 0.112 1.206 5.383 0.138 0.065 1270 chr19 13946341 13977625 + 0 NA Intergenic Intergenic -14510 NR_029495 407010 NR_029495 ENSG00000207980 MIR23A MIRN23A|hsa-mir-23a|miRNA23A|mir-23a microRNA 23a ncRNA 3.454 2.399 2.466 1.093 2.133 1.284 3.613 2.883 0.597 1.415 0.407 3.034 2.513 5.937 0.189 1.033 2.220 2.014 4.244 2.399 2.215 3.990 2.851 1.799 1.844 1.789 2.355 3.243 5.673 1.493 1.125 0.448 0.595 4.059 3.966 1.672 2.196 1.836 1.368 1.144 0.419 0.814 0.394 3.613 3.034 0.744 3.004 0.287 0.505 2050 chr5 179244343 179250043 + 0 NA promoter-TSS (NM_003900) promoter-TSS (NM_003900) -649 NM_003900 8878 Hs.587290 NM_003900 ENSG00000161011 SQSTM1 A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B sequestosome 1 protein-coding 4.446 5.422 4.854 5.548 3.490 1.548 2.893 6.064 0.385 2.696 0.824 5.085 12.796 5.683 0.230 2.714 3.054 8.157 nan 4.770 4.059 8.592 5.698 8.316 8.100 1.994 nan 6.575 11.535 3.615 3.651 1.737 2.243 8.152 13.055 2.791 3.587 2.357 1.088 4.185 5.444 1.316 2.229 2.893 5.085 0.781 5.337 0.800 0.772 1418 chr2 25193473 25196997 + 0 NA promoter-TSS (NM_001198559) promoter-TSS (NM_001198559) 254 NR_034113 729723 Hs.436366 NR_034113 ENSG00000224165 DNAJC27-AS1 - DNAJC27 antisense RNA 1 ncRNA 8.969 4.139 7.614 7.359 8.798 6.322 7.171 3.644 0.567 4.404 2.425 4.293 22.594 8.383 0.199 6.879 8.621 11.135 15.694 15.937 14.721 12.264 9.783 36.496 39.244 7.240 8.964 14.280 22.201 9.895 11.630 8.383 12.023 7.160 6.443 10.857 9.917 5.576 3.236 4.121 8.094 1.149 5.550 7.171 4.293 3.233 4.804 4.566 3.781 423 chr11 20177583 20189681 + 0 NA Intergenic Intergenic -1762 NM_001029865 120237 Hs.558604 NM_001029865 ENSG00000109851 DBX1 - developing brain homeobox 1 protein-coding 0.598 0.697 0.441 0.409 1.418 0.527 0.232 0.057 0.068 0.130 0.089 0.171 0.326 0.018 0.069 0.422 0.300 0.114 0.176 0.591 0.597 1.691 0.362 0.156 0.178 0.499 0.742 0.998 1.498 0.708 0.535 0.180 0.272 0.236 0.206 0.174 0.506 0.631 0.560 0.115 0.055 0.047 6.137 0.232 0.171 0.049 0.017 0.041 0.255 1818 chr3 141048505 141066976 + 0 NA intron (NM_001080412, intron 1 of 7) L2a|LINE|L2 14685 NM_001080412 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 1.204 nan nan 0.327 0.422 0.130 0.208 0.239 0.096 0.229 0.196 0.065 0.205 0.047 0.102 0.306 0.224 0.212 0.256 0.285 0.385 nan 2.133 0.279 0.297 0.308 nan 0.268 nan nan 0.322 0.175 0.216 0.059 0.092 0.362 0.828 0.727 0.648 0.033 0.094 0.026 0.086 0.208 0.065 0.037 0.078 0.027 0.187 1446 chr2 68148503 68183501 + 0 NA Intergenic Intergenic -113308 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 1.451 0.935 nan 0.359 1.712 0.876 0.469 0.171 0.088 0.323 0.243 0.557 2.443 0.071 0.124 0.307 0.188 0.272 0.466 1.430 1.184 nan 0.119 0.240 0.257 0.218 0.344 0.896 1.220 0.974 1.067 0.125 0.198 0.582 0.393 0.696 2.495 0.346 0.263 1.316 0.333 0.240 0.068 0.469 0.557 0.045 0.438 0.037 0.693 229 chr1 164556568 164621968 + 0 NA intron (NM_001204963, intron 2 of 8) AluJb|SINE|Alu 60671 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 - PBX homeobox 1 protein-coding 1.499 nan 1.892 0.871 1.422 0.637 3.409 1.262 0.259 0.385 0.261 1.484 1.579 0.043 0.107 0.930 1.229 2.167 6.311 1.321 nan 1.890 1.318 0.531 0.545 3.336 3.966 1.632 nan 0.392 0.237 1.485 2.041 1.328 1.114 0.431 0.808 0.989 0.800 0.902 1.946 0.336 1.818 3.409 1.484 0.129 0.121 1.248 0.237 2567 chr9 136704545 136709965 + 0 NA intron (NM_001134398, intron 3 of 29) intron (NM_001134398, intron 3 of 29) -102178 NM_007101 1757 Hs.198003 NM_007101 ENSG00000123453 SARDH BPR-2|DMGDHL1|SAR|SARD|SDH sarcosine dehydrogenase protein-coding 2.275 0.841 1.310 2.669 1.531 0.770 2.237 0.124 1.247 0.703 1.695 0.896 0.020 0.044 0.242 0.357 0.236 0.321 1.928 2.416 nan 0.312 1.067 0.956 0.241 0.307 2.295 3.526 2.173 2.658 1.497 2.163 2.756 3.339 0.483 0.733 2.378 1.222 0.359 0.593 1.211 2.804 2.237 1.695 3.729 1.211 2.691 0.276 1775 chr3 69118907 69144304 + 0 NA Intergenic FLAM_A|SINE|Alu -2081 NM_003968 9039 Hs.154320 NM_003968 ENSG00000144744 UBA3 NAE2|UBE1C|hUBA3 ubiquitin like modifier activating enzyme 3 protein-coding 1.351 nan 1.890 0.751 0.436 0.194 0.349 0.776 0.107 0.252 0.149 0.574 1.721 0.465 0.080 0.595 0.761 1.014 1.535 1.013 1.047 1.043 0.388 0.532 0.527 0.883 1.245 0.737 1.009 1.176 0.929 0.549 1.043 0.309 0.334 2.012 nan 0.722 0.417 0.219 0.343 0.063 0.350 0.349 0.574 0.191 0.487 0.347 0.977 2213 chr7 1703524 1711285 + 0 NA Intergenic CpG -41394 NM_001128636 392617 Hs.42896 NM_001128636 ENSG00000225968 ELFN1 PPP1R28 extracellular leucine rich repeat and fibronectin type III domain containing 1 protein-coding 1.277 0.555 2.096 0.351 0.436 0.129 1.056 0.134 0.062 0.081 0.109 1.778 nan 9.376 0.224 0.277 0.256 0.137 nan 4.178 3.230 nan 0.120 0.355 0.312 0.470 0.809 nan 3.609 0.896 0.920 0.123 0.087 0.097 0.169 0.551 1.757 0.171 0.171 0.553 0.134 0.012 0.082 1.056 1.778 0.352 0.273 0.039 0.126 898 chr15 89901697 89945995 + 0 NA intron (NR_133001, intron 3 of 6) L2b|LINE|L2 2573 NR_015411 254559 Hs.136313 NR_015411 ENSG00000255571 MIR9-3HG LINC00925 MIR9-3 host gene ncRNA 1.398 nan 0.580 0.220 1.217 0.596 1.271 0.266 0.069 0.701 0.446 1.553 2.021 0.441 0.071 5.194 6.913 2.635 1.756 1.874 1.572 0.914 0.308 0.113 0.130 1.070 1.575 0.834 1.091 2.428 2.539 1.760 3.011 0.502 0.356 0.873 2.142 0.804 0.516 0.481 0.635 0.121 0.466 1.271 1.553 0.567 0.312 1.172 0.301 441 chr11 46347317 46391741 + 0 NA intron (NM_003646, intron 1 of 30) CpG 573 NM_001199267 8525 Hs.502461 NM_003646 ENSG00000149091 DGKZ DAGK5|DAGK6|DGK-ZETA|hDGKzeta diacylglycerol kinase zeta protein-coding nan 1.442 3.073 1.600 0.817 0.440 1.503 0.227 0.091 0.722 0.486 0.687 4.700 0.317 0.126 3.288 4.733 0.633 0.936 1.888 1.797 1.994 0.786 1.533 1.491 0.564 1.010 0.587 0.798 1.139 0.940 2.793 4.557 2.118 2.229 0.368 nan 1.293 0.738 1.793 0.836 0.908 0.836 1.503 0.687 0.801 0.558 3.505 0.120 226 chr1 161733846 161737101 + 0 NA promoter-TSS (NM_007348) promoter-TSS (NM_007348) -561 NM_007348 22926 Hs.492740 NM_007348 ENSG00000118217 ATF6 ACHM7|ATF6A activating transcription factor 6 protein-coding 5.738 4.163 4.546 4.353 3.243 1.226 1.214 5.387 0.348 3.079 1.668 3.173 6.825 6.143 0.341 4.548 6.243 9.153 12.338 4.910 nan 4.348 1.652 13.177 13.715 5.181 5.803 8.413 nan 7.328 6.467 18.086 12.219 5.669 8.756 6.108 8.892 3.991 2.297 0.956 6.236 0.873 2.690 1.214 3.173 1.010 3.534 6.697 1.936 1213 chr18 55364656 55387501 + 0 NA intron (NM_005603, intron 2 of 27) intron (NM_005603, intron 2 of 27) 78544 NM_001242804 100505549 Hs.660645 NM_001242804 LOC100505549 - uncharacterized LOC100505549 protein-coding nan 1.026 1.075 0.290 0.808 0.445 0.658 0.245 0.085 0.324 0.207 2.382 0.487 0.066 0.082 0.505 0.472 0.516 1.621 0.674 0.898 8.494 4.500 3.711 4.055 0.265 0.403 1.289 1.364 0.574 0.768 1.049 1.495 1.314 1.887 0.296 0.522 nan 1.973 0.188 0.308 0.359 0.289 0.658 2.382 0.064 0.357 0.618 0.251 1025 chr17 17638849 17696852 + 0 NA intron (NR_130894, intron 1 of 1) AluSz6|SINE|Alu 1766 NR_130894 100861516 Hs.624874 NR_130894 ENSG00000237328 RAI1-AS1 - RAI1 antisense RNA 1 ncRNA 2.164 1.034 1.893 0.983 2.625 1.496 1.559 0.310 0.077 0.686 0.339 2.046 1.921 0.358 0.039 2.335 4.028 0.488 nan 3.760 3.703 1.598 0.497 0.630 0.576 1.080 1.569 4.505 5.267 nan 5.489 0.568 0.829 0.683 0.828 2.302 3.818 1.486 0.743 0.943 1.619 0.270 1.102 1.559 2.046 0.799 2.391 0.348 2.715 1531 chr2 213128743 213179268 + 0 NA intron (NM_005235, intron 1 of 27) intron (NM_005235, intron 1 of 27) 137079 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA nan 0.988 nan 0.131 0.248 0.171 0.200 0.095 0.073 0.208 0.194 0.059 0.416 0.251 0.085 0.403 0.288 0.424 0.825 0.210 0.251 0.530 0.266 0.259 0.273 2.559 2.699 0.361 nan 0.585 0.279 0.124 0.253 0.869 1.622 0.497 1.123 0.302 0.234 0.095 0.048 0.250 0.049 0.200 0.059 0.070 0.054 0.039 0.257 1734 chr22 41761774 41768503 + 0 NA intron (NM_001145398, intron 1 of 3) intron (NM_001145398, intron 1 of 3) 1801 NM_001145398 7008 Hs.181159 NM_003216 ENSG00000167074 TEF - TEF, PAR bZIP transcription factor protein-coding 3.207 nan 2.195 0.954 0.793 0.405 0.749 0.490 0.143 0.490 0.283 1.013 0.760 0.179 0.053 1.366 1.927 0.656 1.242 2.283 1.909 2.949 0.634 0.658 0.675 1.749 nan 4.857 6.464 10.179 13.976 0.572 0.646 0.586 0.827 1.358 3.264 0.878 0.722 0.935 3.880 0.126 0.684 0.749 1.013 1.717 0.662 0.117 1.509 2117 chr6 36275727 36318268 + 0 NA intron (NM_001010903, intron 2 of 11) intron (NM_001010903, intron 2 of 11) 7665 NM_001010903 389384 Hs.162104 NM_001010903 ENSG00000189325 C6orf222 - chromosome 6 open reading frame 222 protein-coding nan 0.932 nan 0.586 0.439 0.196 0.821 0.087 0.068 0.327 0.166 0.648 0.888 0.100 0.107 3.488 4.403 3.452 nan nan 0.702 1.632 0.535 1.732 1.812 0.225 0.445 2.871 2.876 0.546 0.386 1.404 2.126 0.579 0.804 0.357 0.561 1.685 1.105 0.756 0.809 0.117 0.569 0.821 0.648 0.129 0.831 1.352 0.098 510 chr11 101979565 101986036 + 0 NA promoter-TSS (NM_001195045) promoter-TSS (NM_001195045) -371 NM_001195045 10413 Hs.503692 NM_006106 ENSG00000137693 YAP1 COB1|YAP|YAP2|YAP65|YKI Yes associated protein 1 protein-coding 0.629 0.770 2.005 0.175 0.160 0.174 0.612 2.343 0.176 0.071 0.142 0.222 5.302 10.869 0.222 0.271 0.133 2.552 6.080 0.709 0.571 0.158 0.092 1.121 1.143 0.152 0.256 0.215 0.263 0.361 0.060 0.275 0.596 0.079 0.069 0.106 0.130 0.180 0.289 0.035 0.061 0.036 0.612 0.222 0.015 0.006 0.092 0.152 2283 chr7 91509116 91526493 + 0 NA Intergenic SVA_F|Other|Other -7770 NM_001301135 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding nan 1.033 nan 0.410 0.591 0.341 0.627 0.545 0.129 0.405 0.276 0.482 0.867 0.499 0.178 0.985 0.890 0.458 0.682 0.826 0.812 2.575 0.756 1.090 1.149 0.707 0.988 0.770 0.717 2.029 2.206 0.661 1.010 1.419 1.138 2.447 nan 1.316 0.986 0.232 0.359 0.180 0.186 0.627 0.482 0.186 0.264 0.404 1.618 29 chr1 8720488 8793576 + 0 NA intron (NM_001042681, intron 1 of 22) intron (NM_001042681, intron 1 of 22) 120667 NM_001042681 473 Hs.463041 NM_012102 ENSG00000142599 RERE ARG|ARP|ATN1L|DNB1|NEDBEH arginine-glutamic acid dipeptide repeats protein-coding 1.928 nan 1.983 10.302 1.141 0.552 0.623 1.001 0.203 0.784 0.545 0.765 2.483 1.895 0.184 0.924 0.816 0.890 1.999 2.650 2.409 1.818 0.658 1.861 1.833 2.746 nan nan 8.113 nan 1.980 0.772 1.289 0.844 1.295 2.261 4.396 1.592 0.938 1.065 0.913 0.208 0.655 0.623 0.765 0.281 0.565 0.656 1.107 2542 chr9 127410673 127462860 + 0 NA intron (NR_038975, intron 1 of 1) MIR|SINE|MIR 16051 NR_038975 100379345 Hs.660412 NR_038975 ENSG00000224020 MIR181A2HG - MIR181A2 host gene ncRNA nan nan 1.218 1.280 0.529 0.342 0.544 0.911 0.143 0.421 0.334 0.405 nan 2.909 0.147 1.081 1.132 1.894 2.567 1.175 0.888 1.120 0.351 2.576 2.734 0.579 nan 1.068 1.385 1.606 1.442 1.007 1.282 1.212 1.077 1.082 1.561 nan 0.737 0.303 0.109 0.148 0.189 0.544 0.405 0.052 0.192 0.586 0.485 617 chr12 54663827 54678528 + 0 NA intron (NM_012117, intron 1 of 4) AluSx1|SINE|Alu 2738 NM_012117 23468 Hs.349283 NM_012117 ENSG00000094916 CBX5 HEL25|HP1|HP1A chromobox 5 protein-coding nan 2.269 2.879 3.274 3.662 1.913 2.185 1.843 0.153 2.155 1.311 3.030 6.197 2.086 0.118 nan 5.515 4.923 6.696 6.361 nan 6.923 5.693 10.364 11.231 3.038 nan 5.427 nan 7.044 6.322 4.355 5.842 4.704 5.579 6.787 6.526 3.921 1.830 1.404 3.131 0.868 1.214 2.185 3.030 0.874 1.281 1.926 1.877 2220 chr7 5592135 5611029 + 0 NA Intergenic AluSz|SINE|Alu -30854 NM_003088 6624 Hs.118400 NM_003088 ENSG00000075618 FSCN1 FAN1|HSN|SNL|p55 fascin actin-bundling protein 1 protein-coding 3.048 1.754 2.616 1.272 0.939 0.442 1.463 1.406 0.501 0.577 0.384 1.723 nan 4.012 0.211 1.955 1.799 1.781 nan 2.369 1.511 nan 0.970 4.201 4.347 1.269 1.894 nan 4.825 1.238 0.983 0.625 0.794 1.925 2.520 1.805 2.552 1.123 0.715 0.720 0.839 0.266 0.630 1.463 1.723 0.950 1.574 0.352 0.788 486 chr11 72522644 72546675 + 0 NA intron (NM_033388, intron 7 of 17) intron (NM_033388, intron 7 of 17) 9208 NM_001318766 89849 Hs.653186 NM_033388 ENSG00000168010 ATG16L2 ATG16B|WDR80 autophagy related 16 like 2 protein-coding nan 1.408 1.911 1.617 0.882 0.360 1.102 0.718 0.128 0.465 0.292 1.477 2.694 1.058 0.124 2.165 2.832 2.213 2.901 3.126 3.098 3.223 1.617 4.550 5.014 1.606 2.214 2.781 4.380 1.586 1.603 1.474 1.902 1.326 1.346 1.231 1.467 1.302 0.739 1.614 1.222 0.222 0.891 1.102 1.477 0.335 1.295 0.618 0.492 1091 chr17 48860578 48882134 + 0 NA Intergenic AluSz6|SINE|Alu 25345 NR_107026 102466918 NR_107026 ENSG00000278672 MIR8059 hsa-mir-8059 microRNA 8059 ncRNA 2.267 1.139 nan 0.146 0.383 0.237 0.445 0.120 0.157 0.204 0.181 0.106 0.755 0.111 0.104 0.473 0.369 0.331 0.422 0.493 nan 0.610 0.266 0.602 0.590 2.149 2.807 0.970 nan 1.567 1.702 0.281 0.461 0.430 0.548 2.440 9.720 0.711 0.478 0.283 0.173 0.089 0.151 0.445 0.106 0.573 0.321 0.082 5.674 2295 chr7 103433522 103439593 + 0 NA intron (NM_173054, intron 3 of 63) intron (NM_173054, intron 3 of 63) 193406 NM_005045 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding nan 0.669 1.474 0.079 0.248 0.158 0.213 0.100 0.131 0.411 0.283 0.236 0.315 0.054 0.148 2.615 1.158 12.586 6.468 0.313 0.509 0.656 0.419 10.993 11.174 0.633 0.823 0.337 0.297 0.437 0.169 0.734 1.267 0.295 0.392 0.359 nan 0.811 0.905 0.028 0.154 0.048 0.106 0.213 0.236 0.084 0.098 0.101 731 chr13 98923778 98950590 + 0 NA intron (NM_005766, intron 2 of 26) intron (NM_005766, intron 2 of 26) 76406 NR_036129 100422881 NR_036129 ENSG00000263399 MIR3170 mir-3170 microRNA 3170 ncRNA 1.492 1.691 1.497 1.299 2.446 1.364 3.059 0.097 0.109 0.721 0.406 2.404 0.772 0.061 0.083 1.539 1.768 0.397 0.799 2.566 2.207 5.514 1.973 0.170 0.164 0.470 0.535 2.344 2.669 1.088 0.772 1.311 1.766 2.876 3.450 1.455 3.113 0.718 0.417 1.135 2.433 0.632 1.374 3.059 2.404 0.670 1.326 0.791 0.808 1942 chr5 2794218 2803155 + 0 NA Intergenic AluSz|SINE|Alu 46441 NR_122126 153571 Hs.148486 NM_178569 ENSG00000186493 C5orf38 CEI|IRX2NB chromosome 5 open reading frame 38 protein-coding 0.420 0.804 0.852 0.158 1.739 0.884 0.338 0.172 0.127 0.080 0.145 6.146 0.649 0.018 0.115 0.321 0.209 0.222 nan 5.778 7.305 0.111 0.095 0.082 0.030 0.202 0.287 nan 0.168 nan 2.185 0.181 0.229 0.076 0.124 0.125 0.163 0.219 nan 0.742 0.478 0.398 0.338 6.146 0.229 0.034 0.089 1558 chr2 241499197 241509193 + 0 NA TTS (NM_001033575) TTS (NM_001033575) -3668 NM_001308375 51281 Hs.656615 NM_016552 ENSG00000144504 ANKMY1 ZMYND13 ankyrin repeat and MYND domain containing 1 protein-coding 2.766 nan 4.106 3.371 3.618 2.363 2.570 0.627 0.064 1.303 0.973 3.416 8.695 3.009 0.150 4.965 6.542 2.665 4.721 3.561 3.187 4.175 1.597 5.851 5.613 2.584 3.189 4.865 6.377 3.121 3.618 2.549 4.409 1.850 1.614 3.413 3.216 1.975 0.816 5.412 3.560 0.390 1.055 2.570 3.416 0.319 3.435 1.585 1.357 210 chr1 156456717 156479219 + 0 NA intron (NM_005920, intron 1 of 11) intron (NM_005920, intron 1 of 11) 2666 NM_005920 4209 Hs.314327 NM_005920 ENSG00000116604 MEF2D - myocyte enhancer factor 2D protein-coding nan nan 4.087 1.229 1.917 0.897 2.098 2.865 0.406 1.918 1.033 1.729 8.135 2.286 0.114 3.739 5.136 3.801 5.147 3.324 nan 2.925 1.471 1.781 1.744 2.729 3.455 6.198 6.169 3.877 3.420 3.342 5.666 1.795 1.650 3.460 9.556 1.818 1.129 0.651 2.905 0.488 0.981 2.098 1.729 0.978 4.631 3.954 2.792 82 chr1 33793371 33843349 + 0 NA intron (NR_125978, intron 1 of 2) intron (NR_125978, intron 1 of 2) 2407 NR_125978 101929464 Hs.568627 NR_125978 ENSG00000233246 LOC101929464 - uncharacterized LOC101929464 ncRNA 2.628 nan 4.819 1.974 1.210 0.642 1.380 0.842 0.107 0.826 0.488 3.650 3.577 0.410 0.115 1.271 1.609 1.524 2.035 5.774 5.722 nan 0.600 1.694 1.688 2.577 3.365 4.265 5.420 nan 3.305 0.865 1.397 0.566 0.621 1.848 4.300 1.382 nan 2.331 1.852 0.195 1.803 1.380 3.650 0.637 1.028 0.564 1.305 475 chr11 65623867 65629500 + 0 NA promoter-TSS (NM_005507) promoter-TSS (NM_005507) -879 NM_005507 1072 Hs.170622 NM_005507 ENSG00000172757 CFL1 CFL|HEL-S-15|cofilin cofilin 1 protein-coding nan 4.528 4.411 9.837 7.127 3.637 6.566 3.933 0.345 3.641 2.418 8.561 21.843 10.805 0.183 6.645 9.779 6.935 9.499 13.995 11.336 11.191 3.401 17.478 18.722 6.732 9.973 10.066 10.457 7.847 8.073 4.115 9.854 7.772 7.231 3.466 8.914 4.273 1.889 8.130 8.964 3.255 4.616 6.566 8.561 3.591 4.727 3.342 3.355 166 chr1 119674127 119686480 + 0 NA intron (NM_201263, intron 1 of 5) intron (NM_201263, intron 1 of 5) -2716 NR_125977 101929147 Hs.697821 NR_125974 ENSG00000231365 LOC101929147 - uncharacterized LOC101929147 ncRNA nan 2.021 2.412 2.173 1.601 1.141 1.407 0.989 0.224 0.749 0.426 1.737 4.275 1.458 0.138 1.735 2.010 2.284 3.119 3.984 nan 4.271 3.131 5.486 5.754 5.968 6.757 3.856 5.712 3.542 3.579 1.760 2.131 2.475 2.107 4.037 5.312 2.635 1.704 1.410 1.429 0.276 1.368 1.407 1.737 0.490 1.070 0.784 1.377 1762 chr3 25462523 25517300 + 0 NA intron (NR_110893, intron 1 of 6) intron (NR_110893, intron 1 of 6) -9890 NM_001290217 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 0.839 0.921 0.613 0.052 0.220 0.123 0.152 0.615 0.138 0.122 0.176 0.033 0.215 1.298 0.086 0.170 0.137 1.354 4.919 0.311 0.342 0.080 0.060 0.158 0.176 0.719 0.958 0.179 0.201 nan 0.392 0.156 0.235 1.383 1.668 0.120 0.214 0.353 0.367 0.038 0.039 0.364 0.134 0.152 0.033 0.035 0.103 0.034 0.057 1299 chr19 36979210 36982034 + 0 NA promoter-TSS (NM_032838) promoter-TSS (NM_032838) 93 NR_036504 728752 Hs.729762 NR_036504 ENSG00000267309 LOC728752 - uncharacterized LOC728752 ncRNA 6.934 4.063 4.866 16.834 5.807 3.549 5.237 2.751 0.339 2.747 1.089 8.340 30.241 8.222 0.274 9.467 8.724 2.117 3.311 15.620 12.507 12.612 3.750 23.185 24.207 3.879 4.797 10.524 14.402 nan 10.760 10.739 16.057 8.516 7.629 6.932 6.953 6.272 3.179 6.168 5.604 1.391 3.701 5.237 8.340 1.788 2.522 5.301 1.832 2045 chr5 172190510 172206044 + 0 NA promoter-TSS (NM_004417) promoter-TSS (NM_004417) -74 NM_004417 1843 Hs.171695 NM_004417 ENSG00000120129 DUSP1 CL100|HVH1|MKP-1|MKP1|PTPN10 dual specificity phosphatase 1 protein-coding 2.369 3.177 2.545 1.899 1.398 0.807 1.433 2.098 0.302 1.115 0.555 3.267 5.457 2.292 0.146 1.690 2.621 3.422 nan 3.898 3.098 3.261 2.360 3.195 3.285 2.267 nan 2.812 5.086 2.750 3.052 0.961 1.707 2.000 2.316 2.002 2.069 1.381 1.046 0.744 2.062 0.248 1.119 1.433 3.267 0.760 1.929 0.491 0.443 579 chr12 14407909 14416487 + 0 NA Intergenic AluSx|SINE|Alu -106368 NM_001286514 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 2.497 1.548 1.352 5.786 1.842 0.822 4.728 1.144 0.244 0.635 0.492 4.723 2.886 9.618 0.186 0.840 1.295 6.368 7.501 nan 3.434 7.288 2.802 3.623 3.611 2.839 3.019 6.399 9.580 3.050 2.497 2.443 3.857 0.657 0.793 1.887 4.832 2.352 1.198 3.491 3.067 0.063 5.437 4.728 4.723 0.690 1.661 5.059 1.156 493 chr11 77732550 77757875 + 0 NA intron (NM_001203261, intron 2 of 2) AluJo|SINE|Alu -10892 NM_023930 65987 Hs.709780 NM_023930 ENSG00000151364 KCTD14 - potassium channel tetramerization domain containing 14 protein-coding nan 1.832 1.208 0.991 1.210 0.595 1.611 1.005 0.287 0.848 0.425 2.035 3.603 0.232 0.133 0.665 1.473 0.484 1.043 4.338 4.700 2.494 0.903 0.877 1.031 2.650 3.522 1.607 2.097 0.996 0.951 0.418 0.488 3.102 3.224 0.359 0.716 2.543 1.450 2.997 0.369 0.516 0.235 1.611 2.035 0.399 1.475 0.075 0.127 101 chr1 41960807 41985496 + 0 NA 3' UTR (NM_024503, exon 9 of 9) 3' UTR (NM_024503, exon 9 of 9) -22797 NM_001956 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 17.903 1.258 nan 0.419 0.368 0.304 0.836 0.824 0.145 0.297 0.209 0.776 1.918 0.455 0.087 0.601 0.870 0.453 0.849 1.251 1.247 1.122 0.373 1.475 1.527 0.827 nan nan 6.858 1.537 1.823 1.113 nan 0.311 0.347 0.503 0.911 0.941 0.585 0.689 0.178 0.050 0.094 0.836 0.776 0.715 0.136 0.441 0.279 48 chr1 19032360 19059398 + 0 NA intron (NM_002584, intron 7 of 7) intron (NM_002584, intron 7 of 7) 88379 NM_002584 5081 Hs.113253 NM_002584 ENSG00000009709 PAX7 HUP1|PAX7B|RMS2 paired box 7 protein-coding 0.847 0.740 nan 0.072 0.241 0.106 0.081 0.086 0.060 0.058 0.076 0.053 0.343 0.098 0.084 0.205 0.181 0.110 0.123 0.338 0.423 0.080 0.048 0.244 nan 0.151 nan 0.147 0.168 nan 0.424 0.183 0.239 0.037 0.063 1.477 5.463 0.272 0.310 0.039 0.141 0.007 0.041 0.081 0.053 0.266 0.034 0.022 2.117 1962 chr5 36739912 36747571 + 0 NA Intergenic Intergenic 133055 NR_046262 646719 Hs.355684 NR_046262 NIPBL-AS1 NIPBL-AS NIPBL antisense RNA 1 (head to head) ncRNA 1.402 2.905 7.634 3.818 0.510 0.167 0.267 0.837 0.169 0.570 0.277 2.364 5.237 0.298 0.084 2.904 2.179 2.912 3.762 2.768 2.039 0.536 0.143 6.256 6.125 0.653 0.895 6.241 8.702 3.598 3.208 7.399 11.622 0.117 0.138 0.956 2.141 0.711 0.747 0.160 0.314 0.013 1.231 0.267 2.364 0.139 0.199 11.824 0.778 802 chr14 64853403 64856890 + 0 NA exon (NM_005956, exon 1 of 28) exon (NM_005956, exon 1 of 28) 387 NM_005956 4522 Hs.652308 NM_005956 ENSG00000100714 MTHFD1 MTHFC|MTHFD methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 protein-coding 12.625 nan 6.224 7.800 4.659 2.320 6.717 5.702 0.985 1.566 1.254 6.254 10.472 5.151 0.183 6.959 6.149 7.996 9.991 12.304 10.515 9.038 4.396 19.641 20.839 6.090 8.395 9.913 17.579 16.610 19.427 6.864 7.811 11.240 13.153 9.311 7.989 7.639 3.876 5.522 4.684 1.958 4.008 6.717 6.254 1.787 3.090 1.527 2.576 337 chr10 3844395 3856968 + 0 NA Intergenic Intergenic -23208 NM_001300 1316 Hs.4055 NM_001300 ENSG00000067082 KLF6 BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 Kruppel like factor 6 protein-coding 0.528 3.044 0.778 1.389 4.337 2.269 1.519 3.437 0.420 2.230 0.529 1.664 2.641 8.750 0.228 0.453 0.534 1.145 3.043 0.590 0.586 9.678 5.751 0.138 0.171 0.274 0.454 2.934 3.592 0.188 0.066 0.183 0.283 0.943 1.885 0.265 0.438 3.238 1.822 0.022 0.579 0.105 0.088 1.519 1.664 0.023 0.622 0.058 0.040 1286 chr19 31862308 31884758 + 0 NA Intergenic Intergenic -33102 NR_138036 57616 Hs.278436 NM_020856 ENSG00000121297 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 0.494 0.492 0.483 0.104 0.164 0.108 0.303 0.084 0.079 0.045 0.120 0.174 0.445 0.059 0.109 0.406 0.554 0.294 0.310 0.180 0.199 0.167 0.088 0.167 0.135 0.144 0.276 0.141 0.141 nan 0.083 0.380 0.391 0.055 0.065 0.223 0.219 0.180 0.299 2.623 0.075 0.034 0.014 0.303 0.174 0.013 0.733 0.031 0.055 909 chr16 110023 155768 + 0 NA intron (NM_001015054, intron 2 of 3) intron (NM_001015054, intron 2 of 3) 4726 NM_002434 4350 Hs.459596 NM_002434 ENSG00000103152 MPG AAG|ADPG|APNG|CRA36.1|MDG|Mid1|PIG11|PIG16|anpg N-methylpurine DNA glycosylase protein-coding 1.029 nan 0.981 1.201 0.395 0.249 0.422 0.329 0.109 0.410 0.232 0.388 2.886 0.581 0.074 0.601 0.928 0.336 0.553 0.832 0.902 nan 0.498 0.768 0.788 0.443 nan 1.707 1.774 0.590 0.426 0.364 0.374 0.353 0.397 0.350 0.602 0.968 0.560 4.820 0.927 0.066 0.066 0.422 0.388 0.129 0.511 0.067 0.165 1797 chr3 126564523 126595311 + 0 NA intron (NM_001320610, intron 5 of 7) MIRb|SINE|MIR -127520 NM_032242 5361 Hs.432329 NM_032242 ENSG00000114554 PLXNA1 NOV|NOVP|PLEXIN-A1|PLXN1 plexin A1 protein-coding 0.956 nan 1.140 0.523 0.370 0.234 0.295 0.195 0.099 0.565 0.310 0.132 0.644 0.074 0.088 0.321 0.260 0.204 0.402 0.566 0.592 2.991 0.625 0.333 0.321 0.427 nan 0.286 0.499 0.895 0.786 0.325 0.283 0.514 0.383 0.386 0.611 2.466 1.046 0.934 0.156 0.123 0.091 0.295 0.132 0.122 0.254 0.039 0.177 956 chr16 30619880 30632242 + 0 NA Intergenic AluSq2|SINE|Alu -3965 NR_073481 115509 Hs.454685 NM_138447 ENSG00000156853 ZNF689 TIPUH1 zinc finger protein 689 protein-coding 2.135 1.451 3.396 2.098 1.296 0.791 1.622 0.600 0.117 0.620 0.309 2.283 3.708 1.078 0.111 2.077 1.750 1.224 1.808 2.128 2.146 6.532 2.492 2.746 2.842 1.925 2.393 3.454 4.642 3.004 2.637 1.537 1.913 2.002 2.064 1.556 1.416 1.772 1.021 1.804 0.879 0.237 0.894 1.622 2.283 0.551 1.557 0.555 0.511 2514 chr9 73177465 73231941 + 0 NA intron (NM_001007471, intron 21 of 24) intron (NM_001007471, intron 21 of 24) -175130 NM_001206 687 Hs.150557 NM_001206 ENSG00000119138 KLF9 BTEB|BTEB1 Kruppel like factor 9 protein-coding nan nan nan 0.160 0.246 0.156 0.229 0.602 0.109 0.124 0.134 0.413 0.490 0.044 0.081 0.337 0.384 3.643 nan 0.482 nan 0.120 0.071 0.280 0.313 0.320 0.491 0.372 0.350 0.416 0.341 0.184 0.339 0.125 0.164 0.510 1.177 0.724 0.589 0.073 0.113 0.021 0.078 0.229 0.413 0.087 0.095 0.092 0.389 1365 chr19 50174974 50184276 + 0 NA promoter-TSS (NM_001207042) promoter-TSS (NM_001207042) -784 NM_198318 3276 Hs.20521 NM_001536 ENSG00000126457 PRMT1 ANM1|HCP1|HRMT1L2|IR1B4 protein arginine methyltransferase 1 protein-coding 3.338 1.723 3.069 2.148 4.251 2.477 2.119 1.341 0.225 1.129 0.615 2.307 3.358 3.263 0.145 2.588 2.622 2.469 4.036 3.619 4.122 6.281 3.173 7.652 8.248 2.231 3.057 5.767 7.412 7.671 7.046 1.760 2.692 4.926 4.994 4.573 8.174 2.805 1.582 1.488 4.312 0.983 0.882 2.119 2.307 1.031 1.302 0.883 2.157 1766 chr3 46448118 46466195 + 0 NA Intergenic FLAM_C|SINE|Alu 8107 NM_001130910 9034 Hs.535713 NM_003965 ENSG00000121797 CCRL2 ACKR5|CKRX|CRAM|CRAM-A|CRAM-B|HCR C-C motif chemokine receptor like 2 protein-coding 0.619 nan nan 1.308 0.447 0.249 0.126 0.042 0.116 0.585 0.193 0.219 0.477 0.028 0.077 0.166 0.110 0.221 0.354 0.854 0.782 3.672 1.077 0.138 0.196 0.107 0.172 2.277 2.030 0.888 0.843 0.144 0.175 1.766 1.817 0.116 0.126 2.980 1.493 0.009 1.009 0.212 0.080 0.126 0.219 0.311 0.095 0.038 0.048 2500 chr9 33286550 33298959 + 0 NA intron (NM_002504, intron 1 of 23) intron (NM_002504, intron 1 of 23) 2339 NM_001318758 4799 Hs.413074 NM_002504 ENSG00000086102 NFX1 NFX2|TEG-42|Tex42 nuclear transcription factor, X-box binding 1 protein-coding 2.354 nan 2.282 1.918 1.595 0.915 1.894 1.594 0.242 1.478 0.872 1.799 3.172 1.153 0.120 1.685 1.285 3.238 4.475 3.583 3.676 4.815 2.634 5.173 5.473 2.600 3.321 3.156 4.117 3.166 3.146 1.603 2.227 2.221 2.920 1.825 1.967 3.751 1.998 1.717 0.759 0.296 1.072 1.894 1.799 0.369 0.771 0.513 0.569 1960 chr5 34408405 34415226 + 0 NA Intergenic Intergenic -244618 NM_001145522 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 1.057 1.434 nan 0.679 0.265 0.117 1.367 0.614 0.400 0.230 0.217 0.450 3.389 0.126 0.149 0.408 0.433 0.211 0.532 0.492 0.649 10.398 1.672 0.221 0.299 1.937 2.169 0.854 0.600 1.644 1.547 0.401 0.448 3.263 4.088 0.256 0.607 2.020 1.474 0.008 0.197 1.074 0.209 1.367 0.450 0.070 0.519 0.218 0.219 980 chr16 71840491 71844291 + 0 NA intron (NM_001030007, intron 1 of 23) CpG 585 NM_001128 164 Hs.461253 NM_001128 ENSG00000166747 AP1G1 ADTG|CLAPG1 adaptor related protein complex 1 gamma 1 subunit protein-coding 4.108 3.199 nan 5.447 4.741 2.395 3.471 2.601 0.368 1.938 0.783 3.182 6.636 2.348 0.177 6.544 6.071 6.860 9.653 6.509 5.820 6.366 4.920 21.248 23.666 2.599 3.083 6.522 12.419 7.034 6.678 3.363 6.550 3.906 4.289 5.402 4.046 4.047 2.102 1.923 2.396 0.374 2.257 3.471 3.182 1.158 2.402 0.942 1.437 189 chr1 154578976 154581903 + 0 NA intron (NM_001025107, intron 1 of 14) CpG 285 NM_001111 103 Hs.12341 NM_001111 ENSG00000160710 ADAR ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136 adenosine deaminase, RNA specific protein-coding nan 6.014 6.226 4.369 6.030 2.856 6.049 9.600 1.558 5.249 2.834 6.048 19.986 8.649 0.407 4.371 4.844 10.496 16.525 13.667 12.566 8.876 3.087 5.334 5.814 2.986 5.075 10.129 16.912 7.383 7.102 13.107 15.570 6.957 7.722 0.783 0.959 4.249 2.194 5.450 12.924 1.011 3.032 6.049 6.048 0.823 3.649 7.247 0.168 542 chr11 129870370 129879000 + 0 NA non-coding (NR_024233, exon 1 of 1) non-coding (NR_024233, exon 1 of 1) -1955 NM_020228 56980 Hs.275086 NM_020228 ENSG00000170325 PRDM10 PFM7 PR/SET domain 10 protein-coding 3.681 3.887 3.306 5.055 4.774 2.503 5.618 1.450 0.244 2.432 1.110 5.962 7.627 4.204 0.140 7.555 8.253 5.833 8.489 8.664 8.084 6.834 4.893 13.510 13.726 4.222 5.168 8.087 12.265 7.808 9.635 11.451 16.054 7.507 7.519 5.697 nan 3.027 1.931 5.405 4.470 1.689 3.390 5.618 5.962 0.782 2.374 5.625 1.762 2375 chr8 71084149 71108025 + 0 NA intron (NM_001321703, intron 4 of 22) L2c|LINE|L2 -112525 NM_024504 63978 Hs.736037 NM_024504 ENSG00000147596 PRDM14 PFM11 PR/SET domain 14 protein-coding 1.771 0.936 0.992 0.742 0.402 0.216 0.464 0.526 0.088 0.781 0.454 0.418 0.443 0.073 0.096 0.344 0.596 0.286 0.514 1.004 1.146 1.864 0.582 0.440 0.411 1.816 2.171 0.699 1.518 0.411 0.185 0.239 0.328 2.241 3.074 0.618 1.138 3.983 2.165 0.155 0.428 0.589 0.278 0.464 0.418 0.053 1.052 0.116 0.203 1129 chr17 77960561 77972208 + 0 NA intron (NM_019020, intron 3 of 11) intron (NM_019020, intron 3 of 11) -41728 NM_001271846 125058 Hs.369819 NM_019020 ENSG00000167291 TBC1D16 - TBC1 domain family member 16 protein-coding 1.902 2.494 1.714 3.895 6.582 3.360 1.686 0.509 0.188 0.596 0.303 2.715 7.351 1.182 0.073 1.310 1.920 0.684 1.039 1.464 1.345 2.726 0.958 1.202 1.436 nan 0.884 4.423 4.270 1.158 0.926 2.278 2.866 2.284 4.071 0.580 1.853 nan 0.917 2.485 3.936 0.429 0.999 1.686 2.715 1.002 2.442 1.528 0.224 893 chr15 77787614 77808621 + 0 NA Intergenic Intergenic -19820 NR_135692 101929457 Hs.637111 NR_135692 ENSG00000259362 LOC101929457 - uncharacterized LOC101929457 ncRNA 1.034 1.360 1.103 0.230 1.243 0.757 0.408 2.515 0.405 0.239 0.110 0.462 4.676 0.078 0.093 2.123 2.829 0.820 1.295 0.501 0.512 1.131 0.291 0.269 0.379 0.911 1.487 0.584 0.551 0.591 0.318 2.790 3.744 0.341 0.328 0.438 0.907 0.465 0.371 0.397 0.182 0.073 0.068 0.408 0.462 0.453 0.124 2.398 0.287 1509 chr2 183898684 183904180 + 0 NA intron (NM_205842, intron 1 of 31) intron (NM_205842, intron 1 of 31) 2154 NM_205842 10787 Hs.603732 NM_013436 ENSG00000061676 NCKAP1 HEM2|NAP1|NAP125|p125Nap1 NCK associated protein 1 protein-coding 3.711 2.998 3.765 2.674 3.419 1.753 2.821 2.192 0.175 1.537 0.842 3.269 5.773 2.482 0.076 2.427 3.019 4.542 6.266 4.356 4.053 2.968 1.524 13.440 13.117 nan 3.903 10.146 15.537 4.525 4.881 2.196 5.072 1.819 1.825 5.931 5.351 1.604 0.708 1.500 1.413 0.363 1.665 2.821 3.269 1.065 1.458 1.040 1.352 527 chr11 125233719 125253401 + 0 NA intron (NM_022062, intron 5 of 12) intron (NM_022062, intron 5 of 12) -121550 NM_001301851 403312 Hs.450611 NM_203452 LOC403312 - putative uncharacterized protein MGC39545 protein-coding 1.043 1.177 0.760 0.076 0.147 0.130 1.689 0.052 0.008 0.032 0.129 0.036 0.315 0.072 0.097 0.844 1.334 0.329 0.339 0.332 0.323 0.115 0.089 0.460 0.482 0.204 0.355 0.118 0.151 1.207 1.141 0.729 1.096 0.400 0.325 2.098 5.404 0.359 0.290 0.203 0.036 0.116 0.291 1.689 0.036 0.169 0.015 0.251 1.833 718 chr13 72084907 72102556 + 0 NA intron (NM_004392, intron 3 of 7) intron (NM_004392, intron 3 of 7) 347599 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding nan 1.110 0.973 0.046 0.738 0.452 0.333 0.071 0.070 0.116 0.150 0.264 0.292 0.043 0.091 0.647 0.654 0.211 0.329 1.193 1.348 nan 0.202 0.126 0.140 1.083 1.381 0.376 0.427 nan 6.192 0.193 0.394 1.222 2.471 1.367 nan 0.177 0.111 0.050 0.174 0.470 4.513 0.333 0.264 1.218 0.730 0.118 1.015 1606 chr20 32376659 32387763 + 0 NA intron (NR_110623, intron 3 of 3) intron (NR_110623, intron 3 of 3) 16694 NR_110623 101929746 Hs.504633 NR_110623 ENSG00000230753 ZNF341-AS1 - ZNF341 antisense RNA 1 ncRNA 1.125 6.533 3.491 2.737 0.696 0.415 0.179 0.216 0.130 0.296 0.123 3.992 2.491 0.116 0.093 2.097 2.197 0.424 0.750 2.132 nan 1.956 0.648 6.160 6.706 0.410 0.659 10.693 10.443 0.638 0.306 0.759 1.653 0.146 0.239 0.372 nan 0.580 0.426 2.428 0.557 0.053 0.509 0.179 3.992 0.097 0.103 0.446 0.201 2360 chr8 53109908 53143700 + 0 NA exon (NM_014682, exon 7 of 26) exon (NM_014682, exon 7 of 26) 19882 NR_134310 101929341 Hs.147170 NR_134310 ENSG00000253551 LOC101929341 - uncharacterized LOC101929341 ncRNA 1.556 nan 0.798 0.542 0.997 0.457 0.242 0.066 0.114 0.594 0.353 1.718 0.415 0.039 0.109 0.415 0.275 0.217 0.320 1.136 1.340 1.291 0.511 0.221 0.206 0.988 nan 0.718 0.681 0.655 0.405 0.204 0.288 0.877 0.974 0.334 0.710 1.794 0.982 0.021 0.288 0.226 0.152 0.242 1.718 0.203 0.174 0.055 0.160 934 chr16 4816068 4827864 + 0 NA Intergenic MER20|DNA|hAT-Charlie -4747 NM_021646 26048 Hs.513316 NM_021646 ENSG00000103199 ZNF500 ZKSCAN18|ZSCAN50 zinc finger protein 500 protein-coding 1.847 nan 1.540 1.526 1.130 0.618 0.662 0.456 0.232 0.319 0.269 1.010 3.165 0.853 0.076 0.681 0.953 0.561 1.086 1.145 1.136 nan 0.754 1.895 2.013 1.216 nan 1.745 2.106 2.318 2.098 0.507 0.789 1.022 1.105 2.567 7.741 1.373 0.810 0.414 0.703 0.233 0.358 0.662 1.010 0.313 0.680 0.193 3.031 323 chr1 246308987 246331309 + 0 NA intron (NM_001167740, intron 5 of 11) intron (NM_001167740, intron 5 of 11) 260566 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding nan 1.267 nan 1.624 1.042 0.709 0.327 0.250 0.068 0.630 0.525 1.311 4.885 0.045 0.082 0.605 0.783 1.438 1.780 2.781 2.671 1.592 0.453 0.590 0.633 0.750 1.007 2.867 3.060 0.299 0.148 0.397 0.759 1.317 1.333 0.538 1.266 0.882 0.651 2.941 0.683 0.252 0.126 0.327 1.311 0.391 1.026 0.671 0.299 618 chr12 54729820 54789377 + 0 NA intron (NR_120487, intron 1 of 3) AluJr|SINE|Alu -1328 NM_020370 53831 Hs.306199 NM_020370 ENSG00000139572 GPR84 EX33|GPCR4 G protein-coupled receptor 84 protein-coding nan 1.398 1.172 0.817 0.799 0.414 2.633 0.485 0.143 0.963 0.530 1.123 3.449 0.410 0.079 nan 2.202 0.772 1.269 3.781 nan 2.386 1.096 1.006 1.160 0.794 nan 2.388 nan 2.297 1.757 0.607 0.948 2.120 1.907 1.466 4.033 2.599 1.373 0.978 2.273 0.870 1.224 2.633 1.123 0.587 0.906 0.496 1.561 1519 chr2 203129017 203133159 + 0 NA intron (NM_015934, intron 1 of 14) AluSq|SINE|Alu 649 NM_015934 51602 Hs.471104 NM_015934 ENSG00000055044 NOP58 HSPC120|NOP5|NOP5/NOP58 NOP58 ribonucleoprotein protein-coding 7.113 4.858 5.897 7.001 7.617 3.553 5.523 2.300 0.966 2.615 1.697 5.682 12.247 3.769 0.167 6.718 7.329 9.018 13.338 8.773 7.766 8.760 4.991 23.452 25.497 7.110 9.004 12.222 17.267 12.367 16.780 6.960 11.438 6.061 6.140 12.974 11.372 4.246 2.149 4.262 3.079 0.940 2.788 5.523 5.682 2.273 2.601 2.964 2.927 1396 chr2 5453377 5458025 + 0 NA Intergenic Intergenic 375549 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 2.056 0.841 1.872 0.247 1.234 0.952 0.701 0.096 0.072 0.305 0.244 1.122 1.074 0.046 0.110 0.410 0.647 0.343 1.873 7.935 6.283 1.589 0.456 0.020 0.096 0.367 0.571 0.751 0.748 2.271 2.934 0.085 0.144 1.445 1.866 2.805 6.894 0.189 0.132 0.940 0.535 0.411 1.346 0.701 1.122 3.057 0.043 0.021 1.839 1841 chr3 170072379 170077225 + 0 NA promoter-TSS (NM_005414) promoter-TSS (NM_005414) -671 NM_005414 6498 Hs.536655 NM_005414 ENSG00000136603 SKIL SNO|SnoA|SnoI|SnoN SKI like proto-oncogene protein-coding 9.869 5.021 5.333 5.465 5.204 2.314 4.360 3.348 0.218 4.089 2.019 6.026 5.466 6.911 0.130 3.208 5.670 4.425 6.662 7.223 6.417 10.416 3.116 9.750 9.735 4.061 5.754 8.139 10.378 12.830 14.360 2.649 5.548 6.230 4.923 7.760 10.285 2.221 1.277 5.401 2.221 2.063 4.226 4.360 6.026 1.321 3.035 2.646 4.432 2291 chr7 101761141 101769667 + 0 NA intron (NM_181500, intron 8 of 22) intron (NM_181500, intron 8 of 22) -162949 NM_020979 10603 Hs.489448 NM_020979 ENSG00000160999 SH2B2 APS SH2B adaptor protein 2 protein-coding nan 0.553 0.758 0.372 0.422 0.217 0.239 0.466 0.131 0.386 0.194 0.203 0.424 0.189 0.144 2.946 3.696 7.062 8.962 0.370 0.514 2.301 0.668 0.232 0.259 0.407 0.858 1.291 1.004 0.401 0.215 2.078 2.757 0.136 0.246 0.269 nan 1.312 0.690 0.165 0.198 0.034 0.249 0.239 0.203 0.069 0.262 1.175 0.186 494 chr11 77807337 77822888 + 0 NA intron (NM_024079, intron 11 of 12) intron (NM_024079, intron 11 of 12) -23847 NM_001203262 100532726 Hs.407860 NM_001203260 ENSG00000259112 NDUFC2-KCTD14 - NDUFC2-KCTD14 readthrough protein-coding nan 1.849 2.383 0.453 0.403 0.288 0.584 0.331 0.186 0.760 0.562 0.600 4.278 0.184 0.110 0.462 0.494 0.321 0.493 2.969 3.286 0.925 0.331 0.749 0.818 4.007 4.675 0.614 0.582 1.027 0.883 0.208 0.432 0.943 1.776 0.943 2.195 1.759 1.001 4.160 2.840 0.250 0.666 0.584 0.600 0.967 0.156 0.070 0.762 1440 chr2 55458065 55461994 + 0 NA promoter-TSS (NM_152385) promoter-TSS (NM_152385) 215 NM_001177413 6233 Hs.311640 NM_002954 ENSG00000143947 RPS27A CEP80|HEL112|S27A|UBA80|UBC|UBCEP1|UBCEP80 ribosomal protein S27a protein-coding 5.781 nan 4.009 6.560 6.093 3.598 4.657 2.965 0.122 4.698 2.120 6.454 12.364 6.187 0.176 8.456 8.002 9.850 13.629 9.524 11.011 7.999 4.722 22.082 23.877 4.784 6.748 13.256 16.045 12.676 11.729 4.883 8.755 4.561 5.528 9.681 9.520 4.046 2.213 4.105 4.229 0.899 2.171 4.657 6.454 1.785 4.475 2.742 3.628 1216 chr18 56609517 56640653 + 0 NA intron (NM_001318726, intron 7 of 9) AluSz6|SINE|Alu -77826 NR_024021 390858 Hs.716280 NR_024021 OACYLP ACYL3P O-acyltransferase like, pseudogene pseudo nan 1.076 1.345 0.250 0.422 0.141 0.304 0.354 0.116 0.188 0.174 0.482 0.421 0.084 0.087 0.661 0.521 0.722 0.655 0.733 0.899 0.888 0.374 1.444 1.345 0.644 0.965 0.858 0.958 2.017 2.019 0.182 0.318 0.323 0.365 1.164 4.368 nan 1.124 0.186 0.378 0.073 0.383 0.304 0.482 0.128 0.069 0.057 1.995 1661 chr20 62839953 62857404 + 0 NA intron (NM_004535, intron 11 of 22) intron (NM_004535, intron 11 of 22) -38370 NM_001104925 55251 Hs.744845 NM_018257 ENSG00000203880 PCMTD2 C20orf36 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 protein-coding 0.906 0.968 0.804 0.201 0.295 0.165 0.536 0.111 0.116 0.261 0.118 0.214 0.574 0.102 0.130 0.883 nan 0.168 0.227 0.621 0.746 0.530 0.311 0.629 0.639 0.375 0.624 0.366 0.498 0.441 0.308 0.586 0.772 0.057 0.104 0.426 0.733 1.377 0.824 4.779 2.653 0.028 0.124 0.536 0.214 0.050 0.279 0.131 0.108 1249 chr19 3356113 3372554 + 0 NA intron (NM_205843, intron 1 of 10) MIR|SINE|MIR -2232 NM_005597 4782 Hs.170131 NM_005597 ENSG00000141905 NFIC CTF|CTF5|NF-I|NFI nuclear factor I C protein-coding 1.742 2.042 3.392 1.529 2.273 1.295 1.729 2.191 0.341 1.303 0.615 2.976 3.129 3.763 0.110 1.423 2.298 1.483 1.546 4.096 3.545 1.213 0.435 2.992 2.880 5.555 7.661 2.226 nan 5.557 5.753 0.952 1.525 1.694 1.434 0.655 0.964 1.446 0.912 1.793 1.569 0.603 0.180 1.729 2.976 0.751 1.831 0.766 0.420 697 chr13 27535683 27547049 + 0 NA Intergenic Intergenic -158304 NR_046547 100874070 Hs.524923 NR_046547 USP12-AS1 - USP12 antisense RNA 1 ncRNA 1.279 0.610 3.440 1.825 0.408 0.218 0.225 0.086 0.057 0.248 0.131 1.628 0.678 0.048 0.068 0.890 1.663 0.362 nan 4.777 4.622 2.165 0.423 0.219 0.295 0.830 1.143 1.954 2.301 8.056 10.061 1.059 1.205 0.128 0.128 0.239 0.435 1.914 0.933 0.147 0.552 0.803 0.225 1.628 0.662 2.619 0.898 0.087 42 chr1 15849338 15855577 + 0 NA promoter-TSS (NR_109898) promoter-TSS (NR_109898) -851 NM_001287811 23341 Hs.655410 NM_015291 ENSG00000116138 DNAJC16 - DnaJ heat shock protein family (Hsp40) member C16 protein-coding 3.055 2.423 nan 10.916 3.177 1.617 1.601 1.203 0.105 1.500 0.501 1.058 10.730 3.527 0.164 3.025 3.627 3.268 4.185 6.382 5.250 4.479 2.429 8.318 nan 3.365 nan 11.102 16.115 nan 2.337 1.775 2.514 2.236 1.694 4.190 4.388 2.832 1.091 2.300 2.767 0.182 0.919 1.601 1.058 0.920 1.823 0.852 0.928 566 chr12 9593859 9602571 + 0 NA intron (NR_033399, intron 1 of 26) MLT1M|LTR|ERVL-MaLR 2553 NR_033399 440081 Hs.447869 NM_004400 DDX12P CHLR2|DDX12 DEAD/H-box helicase 12, pseudogene pseudo 2.711 nan nan 4.070 2.008 0.855 1.539 0.465 0.056 1.599 0.715 2.275 4.971 1.760 0.149 2.104 1.848 4.072 5.329 nan 4.718 6.599 2.955 5.844 5.813 2.108 3.098 4.088 6.385 2.548 2.809 1.340 2.524 5.429 5.896 3.077 nan 1.384 0.977 1.946 1.381 1.957 0.918 1.539 2.275 0.393 1.094 0.930 0.921 90 chr1 38267359 38278644 + 0 NA promoter-TSS (NM_001142726) promoter-TSS (NM_001142726) -472 NM_198446 127687 Hs.532749 NM_198446 ENSG00000197982 C1orf122 ALAESM chromosome 1 open reading frame 122 protein-coding 2.455 nan 2.367 4.156 1.317 0.686 1.402 1.090 0.155 1.196 0.601 2.717 3.337 1.949 0.205 1.324 1.615 1.263 2.165 2.759 2.678 nan 0.640 2.112 2.163 1.658 2.485 10.664 10.175 nan 2.070 1.883 3.570 0.639 0.624 1.495 2.066 1.417 nan 0.990 1.081 0.143 0.683 1.402 2.717 0.431 1.035 1.018 0.692 778 chr14 37124453 37162463 + 0 NA intron (NM_006194, intron 4 of 4) intron (NM_006194, intron 4 of 4) 16685 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 1.419 0.820 1.263 1.376 0.643 0.296 0.209 0.164 0.181 0.327 0.220 0.583 18.119 0.081 0.103 0.322 0.332 0.342 0.429 9.856 9.336 0.747 0.276 0.376 0.399 0.564 0.789 5.501 6.455 0.745 0.487 0.508 0.748 2.089 2.106 0.065 0.163 1.460 0.708 15.629 6.154 0.951 0.157 0.209 0.583 0.087 0.952 0.451 0.081 1988 chr5 71076487 71087992 + 0 NA Intergenic Intergenic 67249 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 0.966 nan 1.171 0.180 1.865 0.961 0.695 0.204 0.070 0.203 0.120 0.270 1.482 0.087 0.112 0.424 0.451 0.227 0.313 0.676 0.674 10.259 3.615 0.180 0.173 0.600 nan 0.819 0.677 1.544 1.385 0.282 0.301 2.214 2.883 0.622 1.269 1.206 0.759 0.377 0.649 0.447 0.110 0.695 0.270 0.050 0.362 0.086 0.662 223 chr1 160369044 160382869 + 0 NA intron (NM_020335, intron 1 of 7) MIRb|SINE|MIR 5592 NM_020335 57216 Hs.99477 NM_020335 ENSG00000162738 VANGL2 LPP1|LTAP|STB1|STBM|STBM1 VANGL planar cell polarity protein 2 protein-coding 1.995 nan 1.025 0.584 0.945 0.558 5.499 0.086 0.092 0.250 0.151 2.751 3.051 0.889 0.118 1.380 1.974 1.664 2.610 4.854 nan 0.702 0.326 1.009 1.107 0.526 0.844 0.951 nan 1.104 1.085 1.432 2.639 0.374 0.246 1.607 2.593 0.432 0.573 0.544 1.812 0.083 3.129 5.499 2.751 0.345 0.030 0.799 0.924 792 chr14 55560631 55576409 + 0 NA Intergenic AluJr|SINE|Alu -27415 NM_001177388 3958 Hs.531081 NM_002306 ENSG00000131981 LGALS3 CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2 galectin 3 protein-coding nan nan 0.863 1.508 0.568 0.358 3.657 2.804 0.399 0.238 0.162 0.303 3.270 0.096 0.115 1.412 1.640 4.270 6.745 0.519 0.651 0.915 0.263 1.999 2.073 0.410 0.780 2.364 2.164 0.734 0.422 0.564 0.881 0.368 0.496 0.196 0.309 nan 0.690 0.614 0.587 0.091 0.187 3.657 0.303 0.727 1.007 0.389 0.079 2321 chr7 139437587 139455760 + 0 NA intron (NM_001113239, intron 1 of 14) intron (NM_001113239, intron 1 of 14) 31020 NM_001113239 28996 Hs.731417 NM_022740 ENSG00000064393 HIPK2 PRO0593 homeodomain interacting protein kinase 2 protein-coding nan nan nan 0.598 0.490 0.211 0.147 0.262 0.099 1.146 0.486 0.646 0.586 0.060 0.125 0.757 1.181 0.426 0.624 1.334 1.460 nan 0.575 0.554 0.617 1.054 nan 1.174 1.278 nan 0.704 0.582 0.781 0.542 0.754 0.497 0.872 3.803 nan 0.991 0.727 0.073 0.091 0.147 0.646 0.182 1.112 0.201 0.198 297 chr1 225640936 225670357 + 0 NA Intergenic Intergenic -39089 NM_194442 3930 Hs.435166 NM_002296 ENSG00000143815 LBR DHCR14B|LMN2R|PHA|TDRD18 lamin B receptor protein-coding 1.726 nan 2.269 0.878 1.885 0.945 0.768 0.189 0.110 0.796 0.740 1.414 2.000 0.136 0.107 0.732 0.894 0.619 1.045 2.609 nan 2.031 0.725 0.759 0.860 0.413 0.688 2.111 1.877 0.943 1.001 0.269 0.343 1.146 0.874 0.599 1.020 1.932 0.938 0.673 0.290 0.230 0.407 0.768 1.414 0.267 1.317 0.104 0.151 1442 chr2 60748293 60785299 + 0 NA intron (NM_138559, intron 2 of 4) AT_rich|Low_complexity|Low_complexity 13837 NM_018014 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 B-cell CLL/lymphoma 11A protein-coding 2.556 0.620 nan 1.090 1.178 0.558 1.564 0.075 0.037 0.964 0.615 0.698 2.784 0.138 0.110 1.037 1.126 4.756 5.213 4.915 3.977 nan 0.128 1.795 1.819 2.473 3.165 1.690 2.328 3.710 4.352 0.795 1.718 1.449 1.088 2.308 3.153 1.105 0.906 0.900 4.180 0.288 2.726 1.564 0.698 0.957 0.937 0.858 1.397 856 chr15 31771834 31780932 + 0 NA exon (NM_130901, exon 14 of 14) exon (NM_130901, exon 14 of 14) 157325 NM_015995 51621 Hs.376443 NM_015995 ENSG00000169926 KLF13 BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1 Kruppel like factor 13 protein-coding 0.574 nan nan 0.067 0.238 0.178 0.296 0.097 0.070 0.189 0.166 0.184 0.260 0.108 0.059 0.620 1.143 0.166 0.357 0.549 0.791 0.380 0.133 0.173 0.187 0.367 0.553 0.229 0.305 1.408 1.389 0.297 0.380 0.209 0.260 0.224 0.226 0.149 0.118 0.071 0.048 0.041 0.070 0.296 0.184 1.340 0.063 0.054 0.076 429 chr11 33911452 33921026 + 0 NA Intergenic Intergenic -2403 NM_005574 4005 Hs.34560 NM_005574 ENSG00000135363 LMO2 RBTN2|RBTNL1|RHOM2|TTG2 LIM domain only 2 protein-coding 1.542 2.769 nan 1.489 4.275 2.096 2.738 0.340 0.083 1.884 0.536 0.625 5.196 0.120 0.078 0.593 0.721 0.252 0.393 1.756 1.829 0.416 0.185 0.343 0.261 2.387 3.308 2.153 2.390 1.453 1.126 1.293 1.965 1.986 1.382 0.983 nan 3.055 1.672 7.033 2.798 0.366 1.799 2.738 0.625 1.980 0.275 0.972 0.506 1979 chr5 56985511 56997924 + 0 NA Intergenic MamRep1527|LTR|LTR 45230 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA nan nan 0.750 0.014 0.154 0.130 0.268 0.433 0.103 0.051 0.053 0.019 0.350 6.592 0.204 0.247 0.195 1.449 2.274 0.141 0.135 nan 0.043 0.125 0.128 0.331 0.541 0.155 0.182 nan 0.122 0.064 0.106 0.096 0.147 0.224 0.484 0.335 0.312 0.049 0.086 0.031 0.044 0.268 0.019 0.031 0.082 0.024 0.071 854 chr15 31629012 31659691 + 0 NA intron (NM_001302461, intron 1 of 1) intron (NM_001302461, intron 1 of 1) 25293 NM_015995 51621 Hs.376443 NM_015995 ENSG00000169926 KLF13 BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1 Kruppel like factor 13 protein-coding 1.155 nan nan 1.322 1.175 0.606 0.803 1.210 0.200 1.292 0.800 4.081 2.759 0.142 0.055 1.891 3.636 0.404 0.819 4.456 5.020 2.019 0.523 0.465 0.505 1.041 1.393 2.390 2.884 2.164 2.359 1.812 3.230 1.588 1.494 0.377 0.512 0.688 0.440 2.046 1.758 0.409 1.213 0.803 4.081 1.007 0.677 3.366 0.115 1046 chr17 30619352 30646337 + 0 NA intron (NM_001330181, intron 6 of 7) AluY|SINE|Alu 36384 NM_022344 64149 Hs.655257 NM_022344 ENSG00000108666 C17orf75 NJMU-R1|SRI2 chromosome 17 open reading frame 75 protein-coding nan 1.164 1.045 0.229 0.503 0.244 0.409 0.106 0.119 0.301 0.185 0.369 0.787 0.144 0.156 0.521 0.484 0.243 0.412 nan 0.839 0.798 0.314 0.500 0.599 0.622 1.053 1.008 1.226 nan 2.817 0.313 0.434 0.505 0.580 2.331 6.723 1.233 0.686 0.243 0.159 0.135 0.288 0.409 0.369 0.195 0.067 0.183 2.645 1862 chr3 181522458 181527683 + 0 NA Intergenic L1MB8|LINE|L1 95358 NM_003106 6657 Hs.518438 NM_003106 ENSG00000181449 SOX2 ANOP3|MCOPS3 SRY-box 2 protein-coding 0.815 0.984 0.593 0.273 0.489 0.222 0.245 0.058 0.280 0.240 0.243 0.160 0.418 0.315 0.104 0.250 0.267 0.203 0.248 0.451 0.493 12.726 3.356 0.134 0.105 0.534 0.775 0.719 0.806 0.667 0.259 0.184 0.297 0.174 0.219 0.109 0.259 0.458 0.584 0.021 0.153 0.037 0.091 0.245 0.160 0.037 0.039 0.117 1633 chr20 52176964 52244595 + 0 NA Intergenic CpG -11143 NM_006526 7764 Hs.155040 NM_006526 ENSG00000171940 ZNF217 ZABC1 zinc finger protein 217 protein-coding 1.807 1.796 1.443 0.528 0.630 0.341 1.215 2.391 0.423 0.090 0.107 0.122 0.757 6.508 0.286 0.846 nan 1.235 3.255 0.942 0.957 0.306 0.133 0.775 0.793 1.194 1.515 0.835 1.155 1.815 1.536 0.741 1.257 0.085 0.107 1.616 2.607 0.314 0.366 0.712 0.915 0.048 0.837 1.215 0.122 0.295 0.148 0.536 0.682 1392 chr2 2686880 2705029 + 0 NA Intergenic Intergenic -360869 NM_001303052 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 0.424 0.486 0.761 0.213 1.271 0.648 0.438 0.045 0.054 0.344 0.204 2.945 3.177 0.042 0.103 0.387 0.483 0.231 0.270 3.718 3.930 1.454 0.398 0.165 0.167 0.629 0.928 3.612 2.539 0.540 0.462 0.259 0.253 0.163 0.154 0.188 0.197 1.206 0.820 1.404 0.882 0.016 0.066 0.438 2.945 0.344 1.533 0.032 0.028 1825 chr3 156390395 156411373 + 0 NA intron (NM_001184718, intron 2 of 5) intron (NM_001184718, intron 2 of 5) 6431 NM_001184718 25976 Hs.744050 NM_015508 ENSG00000163659 TIPARP ARTD14|PARP7|pART14 TCDD inducible poly(ADP-ribose) polymerase protein-coding nan 1.742 1.754 1.208 1.629 0.917 0.659 1.665 0.231 1.809 1.139 1.112 1.700 0.580 0.106 0.969 1.763 1.927 2.882 1.547 1.627 7.746 4.615 3.490 3.223 2.794 nan 1.631 3.636 2.449 2.050 0.682 1.606 1.029 1.198 2.099 3.018 2.045 1.393 0.329 0.564 0.224 0.478 0.659 1.112 0.190 0.372 0.656 1.011 1682 chr21 38024241 38029656 + 0 NA Intergenic Intergenic -44485 NM_009586 6493 Hs.146186 NM_005069 ENSG00000159263 SIM2 HMC13F06|HMC29C01|SIM|bHLHe15 single-minded family bHLH transcription factor 2 protein-coding 0.714 0.498 0.843 0.261 0.114 0.235 0.049 0.028 0.014 0.155 0.353 0.120 0.044 9.719 11.159 17.094 8.451 0.316 0.461 0.337 0.078 2.361 2.542 0.185 0.416 0.212 0.318 0.351 0.189 2.746 6.112 0.031 0.056 0.245 0.450 nan 0.644 0.031 0.097 0.018 0.071 0.235 0.155 0.018 0.038 1.832 0.090 1380 chr19 59024584 59034478 + 0 NA intron (NM_001316980, intron 1 of 2) intron (NM_001316980, intron 1 of 2) 1395 NM_032792 84878 Hs.515662 NM_032792 ENSG00000119574 ZBTB45 ZNF499 zinc finger and BTB domain containing 45 protein-coding 2.794 1.942 2.855 2.686 5.564 2.618 3.303 0.618 0.104 1.127 0.628 3.557 4.127 2.901 0.132 5.921 7.018 3.080 4.278 4.889 4.899 7.803 3.154 3.082 3.119 2.634 4.189 4.285 6.472 4.545 5.165 2.229 3.635 4.180 3.785 2.781 3.210 3.094 1.591 3.034 2.534 0.779 1.012 3.303 3.557 1.121 2.029 1.521 0.664 2103 chr6 31618518 31621900 + 0 NA promoter-TSS (NR_045828).4 promoter-TSS (NR_045828).4 22 NR_045828 55937 Hs.534468 NM_019101 ENSG00000204444 APOM G3a|HSPC336|NG20|apo-M apolipoprotein M protein-coding 6.629 3.778 nan 8.431 7.286 3.378 5.960 6.146 0.341 2.769 1.232 8.150 15.079 7.252 0.161 8.702 8.628 9.962 14.091 nan 9.591 8.502 6.854 20.407 23.183 4.475 5.532 12.722 16.709 9.260 8.319 5.158 7.887 7.298 9.152 8.078 9.088 4.090 1.966 5.208 4.901 1.543 3.003 5.960 8.150 1.467 3.259 2.309 2.755 2059 chr6 5748311 5754668 + 0 NA intron (NM_006567, intron 6 of 6) intron (NM_006567, intron 6 of 6) -55984 NR_110842 101927950 Hs.571136 NR_110842 ENSG00000270174 LOC101927950 - uncharacterized LOC101927950 ncRNA 1.570 0.750 1.212 0.684 0.882 0.253 1.169 1.546 0.128 0.125 0.141 0.847 0.142 0.105 0.080 0.444 0.436 0.192 0.528 0.496 0.300 2.166 0.254 0.544 0.364 1.350 1.302 1.996 2.192 1.463 1.083 0.251 0.324 0.147 0.487 2.550 5.597 0.707 0.728 0.244 0.098 0.106 0.588 1.169 0.847 0.320 5.386 0.062 1.843 2406 chr8 106561006 106630543 + 0 NA intron (NM_012082, intron 4 of 7) intron (NM_012082, intron 4 of 7) 264627 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 0.941 nan nan 0.103 0.296 0.152 0.081 0.151 0.090 0.056 0.058 0.076 0.438 0.128 0.074 0.316 0.235 0.204 0.227 0.347 0.425 nan 0.126 0.403 0.384 4.866 nan 1.161 nan nan 1.082 0.190 0.268 0.055 0.071 0.444 nan 0.442 0.519 0.033 0.054 0.007 0.021 0.081 0.076 0.248 0.035 0.063 0.304 315 chr1 241997703 242012737 + 0 NA Intergenic Intergenic -6273 NM_130398 9156 Hs.498248 NM_003686 ENSG00000174371 EXO1 HEX1|hExoI exonuclease 1 protein-coding nan 2.215 nan 2.282 1.811 0.856 1.089 0.458 0.118 0.928 0.421 2.101 3.394 0.748 0.125 1.286 1.174 2.109 3.188 3.508 3.305 3.796 1.815 2.280 2.432 1.001 1.353 2.042 2.365 1.674 1.640 0.327 0.709 1.216 1.382 1.372 1.730 3.543 1.620 0.410 0.716 0.251 0.941 1.089 2.101 0.246 0.508 0.191 0.449 2549 chr9 130061723 130076208 + 0 NA intron (NM_032293, intron 2 of 27) AluY|SINE|Alu 42209 NR_104591 84253 Hs.29304 NM_032293 ENSG00000136895 GARNL3 bA356B19.1 GTPase activating Rap/RanGAP domain like 3 protein-coding nan 1.058 0.993 0.327 0.379 0.176 0.131 0.342 0.146 0.075 0.098 0.373 0.983 0.045 0.074 0.251 0.175 0.256 0.472 0.552 0.741 nan 0.195 0.328 0.367 0.727 1.107 1.605 1.707 6.682 5.540 0.154 0.196 0.158 0.181 2.528 4.800 0.744 0.575 0.091 0.098 0.040 0.093 0.131 0.373 0.732 0.358 0.034 1.704 1373 chr19 56057691 56074845 + 0 NA Intergenic MIR|SINE|MIR -9359 NM_001199824 100130827 Hs.712129 NM_001199824 ENSG00000231274 SBK3 SGK110 SH3 domain binding kinase family member 3 protein-coding 1.071 0.843 1.904 0.559 0.736 0.466 0.180 0.319 0.217 0.842 0.544 0.411 0.336 4.235 0.218 0.453 0.326 0.175 0.316 0.718 0.914 2.533 0.713 0.171 0.137 0.445 0.649 0.357 0.538 1.069 0.690 0.482 0.462 0.440 0.439 0.471 1.029 1.603 0.819 0.162 0.104 0.055 0.051 0.180 0.411 0.264 0.237 0.075 0.172 152 chr1 93543376 93547737 + 0 NA intron (NM_001164393, intron 1 of 12) intron (NM_001164393, intron 1 of 12) 764 NM_007358 22823 Hs.31016 NM_007358 ENSG00000143033 MTF2 M96|PCL2|TDRD19A|dJ976O13.2 metal response element binding transcription factor 2 protein-coding nan nan 3.594 3.961 5.440 2.331 2.582 4.611 0.452 1.621 0.801 4.541 10.586 5.089 0.219 6.621 5.537 7.188 9.650 9.781 nan 7.857 3.716 14.645 15.543 6.936 nan 11.562 17.170 nan 9.117 4.476 7.374 2.912 2.826 9.513 8.896 3.713 1.661 3.814 3.346 0.388 2.781 2.582 4.541 0.891 1.510 2.154 2.395 1832 chr3 166827336 166830398 + 0 NA Intergenic Intergenic 212396 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 1.291 1.638 0.766 0.218 0.328 0.159 2.281 0.147 0.260 0.254 0.184 0.154 0.518 0.044 0.324 0.246 0.277 0.342 0.534 0.432 16.672 15.895 0.211 0.138 0.740 1.615 nan 0.432 nan 0.298 0.137 0.248 0.272 0.301 0.465 0.789 0.483 0.606 0.057 0.063 0.026 2.281 0.154 0.064 0.067 0.032 0.200 1612 chr20 40268205 40287329 + 0 NA Intergenic Intergenic -30634 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding nan nan 1.973 5.568 4.144 2.325 0.948 0.122 0.193 1.806 0.862 6.181 8.531 0.045 0.108 4.721 5.127 0.961 0.717 5.167 5.768 nan 4.449 4.931 5.186 0.767 1.127 10.557 12.364 nan 1.617 2.678 4.932 0.982 0.642 0.759 1.851 2.134 1.403 1.791 2.602 0.252 0.401 0.948 6.181 0.269 2.533 3.805 0.535 2313 chr7 115542221 115552315 + 0 NA Intergenic Intergenic 61099 NM_001244583 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding nan 0.558 0.774 0.135 0.246 0.111 0.164 0.180 0.175 0.111 0.285 0.260 0.342 0.053 0.118 0.423 0.287 0.243 0.344 0.145 0.227 0.141 0.110 0.350 0.333 0.666 0.781 0.407 0.342 0.426 0.146 0.173 0.269 3.979 5.976 0.338 0.486 0.459 0.583 0.045 0.139 1.152 0.055 0.164 0.260 0.049 0.101 0.069 0.102 926 chr16 3027122 3040346 + 0 NA Intergenic Intergenic -3194 NM_004203 9088 Hs.732385 NM_004203 ENSG00000127564 PKMYT1 MYT1|PPP1R126 protein kinase, membrane associated tyrosine/threonine 1 protein-coding 2.543 nan 3.927 1.886 1.434 0.821 1.160 0.424 0.222 0.766 0.421 0.906 4.906 1.092 0.099 1.854 2.179 0.927 1.131 2.026 2.030 nan 1.281 2.501 2.562 1.474 nan 1.449 2.118 3.942 3.957 0.749 1.082 3.699 4.143 1.961 4.605 1.855 0.927 2.363 2.437 1.293 0.496 1.160 0.906 1.255 0.845 0.207 1.886 917 chr16 1115746 1141657 + 0 NA promoter-TSS (NR_027242) promoter-TSS (NR_027242) 30 NR_027242 146336 Hs.250557 NM_182510 ENSG00000261713 SSTR5-AS1 - SSTR5 antisense RNA 1 ncRNA 0.604 nan 1.055 0.079 0.408 0.135 0.149 0.063 0.062 0.080 0.060 1.485 0.874 0.063 0.065 0.192 0.157 0.081 0.098 0.379 0.265 nan 0.114 0.141 0.134 0.095 nan 0.134 0.104 0.367 0.196 0.116 0.095 0.547 0.471 0.060 0.106 1.424 0.615 2.349 0.103 0.077 0.015 0.149 1.485 0.098 1.441 0.023 0.024 2557 chr9 133402891 133427442 + 0 NA Intergenic Charlie15a|DNA|hAT-Charlie 39715 NR_027440 100272217 Hs.601255 NR_027440 LOC100272217 - uncharacterized LOC100272217 ncRNA nan 0.783 0.687 0.653 0.822 0.450 1.392 0.261 0.211 0.166 0.117 3.712 0.999 0.036 0.099 0.160 0.146 0.131 0.208 8.866 8.504 nan 0.172 0.134 0.143 1.027 1.043 1.903 2.783 1.851 1.859 0.193 0.173 0.314 0.406 0.333 0.688 0.770 0.634 3.772 2.342 0.090 0.042 1.392 3.712 0.165 0.132 0.020 0.150 2257 chr7 44212623 44230634 + 0 NA intron (NM_000162, intron 1 of 9) ERV3-16A3_I-int|LTR|ERVL 7394 NM_000162 2645 Hs.1270 NM_000162 ENSG00000106633 GCK FGQTL3|GK|GLK|HHF3|HK4|HKIV|HXKP|LGLK|MODY2 glucokinase protein-coding 1.533 2.675 nan 0.601 0.218 0.151 1.411 0.139 0.116 0.663 0.413 0.483 0.553 0.096 0.120 0.669 0.588 0.234 0.304 0.747 0.622 4.384 1.196 0.429 0.464 0.292 0.553 2.045 2.456 0.860 0.629 0.274 0.348 1.133 1.010 0.413 0.669 1.959 1.094 1.711 1.178 0.152 0.242 1.411 0.483 0.177 0.096 0.067 0.147 2253 chr7 39052169 39057118 + 0 NA intron (NM_001166018, intron 2 of 10) intron (NM_001166018, intron 2 of 10) -1476 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 0.942 0.779 0.991 1.075 0.422 0.355 0.180 0.240 0.195 0.101 3.507 0.401 0.109 0.170 1.984 2.572 0.483 0.360 0.272 nan 0.755 0.357 23.113 25.777 0.774 nan nan nan 0.280 0.180 0.671 0.592 3.453 2.757 0.901 nan 0.474 0.353 0.139 2.174 0.789 0.081 0.180 3.507 0.226 3.703 0.332 0.320 406 chr11 11861721 11867664 + 0 NA intron (NM_017944, intron 1 of 26) intron (NM_017944, intron 1 of 26) 1722 NM_001282659 55031 Hs.577256 NM_017944 ENSG00000170242 USP47 TRFP ubiquitin specific peptidase 47 protein-coding 3.368 nan 5.020 5.037 3.369 2.068 2.905 1.128 0.162 2.537 1.298 6.779 10.177 2.460 0.063 nan 11.109 7.056 9.292 9.386 9.229 7.346 3.550 20.022 21.580 5.719 nan 5.699 8.215 6.279 7.217 6.009 11.331 4.948 5.402 4.717 3.647 2.950 nan 2.729 3.549 0.899 1.961 2.905 6.779 0.296 1.299 3.778 1.035 571 chr12 11945137 11977419 + 0 NA intron (NM_001987, intron 2 of 7) intron (NM_001987, intron 2 of 7) 158490 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 0.938 1.144 1.751 4.335 2.763 1.529 0.360 0.333 0.070 1.730 0.999 3.281 2.776 0.102 0.115 0.222 0.192 2.344 3.049 nan 2.936 10.427 4.922 1.283 1.449 0.770 1.161 4.353 5.825 0.558 0.443 0.282 0.390 0.494 0.578 0.306 0.557 1.951 1.033 0.343 0.387 0.106 0.042 0.360 3.281 0.057 0.330 0.064 0.118 1368 chr19 50378297 50382737 + 0 NA promoter-TSS (NM_024682) promoter-TSS (NM_024682) 127 NM_032375 84335 Hs.515542 NM_032375 ENSG00000204673 AKT1S1 Lobe|PRAS40 AKT1 substrate 1 protein-coding 7.369 4.427 5.594 6.500 13.338 6.798 4.787 4.894 0.328 2.590 1.128 6.903 13.186 8.024 0.215 8.731 7.337 8.065 13.276 10.112 10.605 11.289 11.066 26.536 29.012 8.132 9.542 11.343 14.508 15.276 14.162 4.145 5.447 7.113 10.081 11.062 10.296 5.435 2.711 4.935 9.060 1.721 3.468 4.787 6.903 2.371 4.045 3.237 4.400 2546 chr9 128639084 128683624 + 0 NA intron (NR_024123, intron 2 of 6) intron (NR_024123, intron 2 of 6) 150876 NM_001134778 5090 Hs.428027 NM_006195 ENSG00000167081 PBX3 - PBX homeobox 3 protein-coding nan nan 1.003 1.430 1.421 0.702 0.388 0.371 0.102 1.049 0.766 0.693 nan 0.149 0.084 0.311 0.240 0.361 0.465 0.862 1.064 2.100 0.897 0.342 0.331 0.933 nan 1.692 2.354 2.581 1.862 0.164 0.230 2.362 3.012 1.241 2.101 nan 0.769 0.281 0.431 0.396 0.263 0.388 0.693 0.188 1.563 0.047 0.693 455 chr11 62357870 62372962 + 0 NA intron (NM_001330292, intron 6 of 17) MER91C|DNA|hAT-Tip100 3348 NM_001330292 9219 Hs.173043 NM_004739 ENSG00000149480 MTA2 MTA1L1|PID metastasis associated 1 family member 2 protein-coding nan 2.182 2.088 3.931 3.362 1.690 3.168 1.265 0.181 1.510 0.621 2.747 5.349 2.922 0.140 6.912 6.762 4.211 5.573 6.176 5.769 4.532 1.818 5.183 5.620 2.978 4.231 4.965 7.521 3.727 4.080 3.332 5.753 3.308 3.591 3.219 4.136 2.504 1.112 2.420 2.744 0.699 1.631 3.168 2.747 1.288 1.674 2.150 1.178 287 chr1 212808034 212813990 + 0 NA Intergenic AluSp|SINE|Alu 13223 NM_153606 149647 Hs.129293 NM_153606 ENSG00000162771 FAM71A GARI-L4 family with sequence similarity 71 member A protein-coding 1.942 1.786 2.123 0.987 0.916 0.513 0.962 1.865 0.161 1.108 0.559 0.894 nan 0.073 0.113 0.469 0.324 13.725 3.953 2.282 1.629 nan 0.407 3.219 3.349 1.207 nan 5.020 2.870 0.896 1.070 0.133 0.267 1.056 1.327 0.869 2.553 2.267 1.517 0.483 0.135 0.193 0.013 0.962 0.894 0.359 2.219 0.114 0.627 2095 chr6 26671776 26692012 + 0 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -21914 NM_001242798 79692 Hs.126280 NM_024639 ENSG00000181315 ZNF322 HCG12|ZNF322A|ZNF388|ZNF489 zinc finger protein 322 protein-coding 1.179 1.122 nan 5.157 0.588 0.198 0.397 0.170 0.167 0.784 0.540 1.640 nan 0.102 0.241 0.684 0.518 0.285 nan 1.212 1.298 nan 0.753 0.560 0.565 0.384 0.473 8.631 6.048 0.537 0.304 0.341 0.413 0.709 1.046 0.384 0.969 3.417 1.971 0.055 0.893 0.094 0.055 0.397 1.640 0.019 1.741 0.059 0.142 2138 chr6 44820161 44829976 + 0 NA intron (NM_003599, intron 10 of 10) intron (NM_003599, intron 10 of 10) -305450 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 1.135 0.999 0.930 0.163 0.604 0.228 0.177 0.580 0.098 0.334 0.177 0.280 0.728 0.055 0.152 0.578 0.415 0.259 0.487 0.715 0.829 0.130 0.061 0.341 0.305 0.537 0.648 0.554 nan 0.316 0.172 0.477 0.937 2.251 1.941 0.437 0.919 1.201 0.765 5.919 1.269 0.703 0.057 0.177 0.280 0.023 0.021 0.766 0.153 1792 chr3 114858906 114868323 + 0 NA intron (NM_015642, intron 1 of 9) intron (NM_015642, intron 1 of 9) 2513 NM_015642 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 4.463 nan 2.808 2.201 4.044 2.095 2.067 2.727 0.176 1.895 0.780 3.207 3.465 1.687 0.120 2.416 3.650 4.177 4.690 5.360 nan 5.160 2.648 4.436 5.047 nan 5.709 2.065 3.585 7.116 7.826 1.166 2.354 2.013 1.688 2.975 4.502 1.758 1.216 2.993 2.183 0.436 1.329 2.067 3.207 0.959 1.432 1.304 2.481 1378 chr19 58173693 58179350 + 0 NA Intergenic Intergenic -3782 NM_152677 201516 Hs.469663 NM_152677 ENSG00000180532 ZSCAN4 ZNF494 zinc finger and SCAN domain containing 4 protein-coding 1.449 1.220 0.960 0.624 0.654 0.453 0.700 0.278 0.327 0.330 0.205 8.041 0.741 0.959 0.112 0.431 0.727 0.463 0.788 2.543 3.147 4.036 0.937 0.115 0.225 0.362 0.684 0.273 0.233 1.051 0.866 0.697 0.734 0.699 0.374 0.228 0.738 0.929 0.573 0.256 0.062 0.034 2.145 0.700 8.041 0.172 0.035 0.180 0.044 567 chr12 10305987 10346499 + 0 NA intron (NM_001079815, intron 1 of 5) AluSx|SINE|Alu -1453 NM_002543 4973 Hs.412484 NM_002543 ENSG00000173391 OLR1 CLEC8A|LOX1|LOXIN|SCARE1|SLOX1 oxidized low density lipoprotein receptor 1 protein-coding 0.671 0.567 0.653 0.260 0.196 0.118 0.075 0.083 0.056 0.127 0.155 0.055 0.417 0.134 0.138 0.185 0.119 2.063 7.159 nan 0.429 0.420 0.175 0.413 0.378 0.143 0.281 0.336 0.417 0.237 0.073 0.208 0.285 0.056 0.086 0.297 0.491 0.192 0.236 0.027 0.062 0.021 0.021 0.075 0.055 0.024 0.111 0.063 0.098 236 chr1 167050181 167055432 + 0 NA intron (NM_005814, intron 1 of 6) L2b|LINE|L2 7062 NM_005814 10223 Hs.651244 NM_005814 ENSG00000143167 GPA33 A33 glycoprotein A33 protein-coding 1.658 nan 6.123 0.118 0.533 0.336 0.560 0.213 0.062 0.357 0.188 0.057 0.760 0.062 0.097 0.697 0.992 0.491 1.200 0.847 nan 5.292 0.809 0.225 0.205 0.600 0.977 0.986 nan 1.017 1.566 4.663 5.435 8.340 9.433 0.804 1.808 0.703 0.727 0.064 0.490 2.959 0.275 0.560 0.057 0.999 0.192 8.161 0.870 2307 chr7 114561919 114582087 + 0 NA intron (NM_001166345, intron 2 of 4) intron (NM_001166345, intron 2 of 4) 9794 NM_001166345 29969 Hs.741413 NM_199072 ENSG00000135272 MDFIC HIC MyoD family inhibitor domain containing protein-coding nan 0.710 1.601 0.113 0.403 0.182 0.254 1.561 0.208 0.163 0.171 0.765 0.957 0.672 0.150 0.428 0.269 0.796 1.339 0.223 0.241 0.235 0.101 0.595 0.597 2.646 3.337 0.399 0.780 0.451 0.334 0.151 0.337 1.017 0.928 0.533 0.882 0.463 0.630 0.074 0.177 0.173 0.126 0.254 0.765 0.062 0.202 0.064 0.171 1912 chr4 105884113 105889239 + 0 NA Intergenic L1M2|LINE|L1 -180356 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 0.472 nan nan 0.415 0.570 0.104 0.249 0.044 0.031 0.122 0.027 0.489 3.935 0.064 0.075 0.407 0.305 9.275 nan 0.211 0.309 0.115 0.057 0.199 0.098 0.261 nan 1.153 1.252 0.272 0.099 0.061 0.260 0.370 0.297 0.208 nan 0.387 0.353 0.032 0.062 0.038 0.062 0.249 0.489 0.020 0.038 557 chr12 6998911 7001697 + 0 NA Intergenic (CCCCG)n|Simple_repeat|Simple_repeat -1782 NR_135083 105369632 Hs.670096 NR_135083 ENSG00000111671 LOC105369632 - uncharacterized LOC105369632 ncRNA 3.470 nan nan 8.034 4.155 1.960 2.634 1.922 0.172 1.708 0.865 4.208 7.712 3.861 0.202 1.968 2.407 5.468 8.984 nan 5.983 14.835 6.705 8.856 10.157 6.585 6.719 7.038 8.886 2.877 1.799 2.600 3.480 4.573 6.528 5.411 7.209 2.535 1.350 4.494 4.617 0.683 4.889 2.634 4.208 6.604 2.401 2.187 1.913 929 chr16 3173142 3186587 + 0 NA intron (NR_110900, intron 3 of 5) ERVL-B4-int|LTR|ERVL 5019 NR_110900 100507458 Hs.522143 NR_110900 ZNF213-AS1 - ZNF213 antisense RNA 1 (head to head) ncRNA 2.706 nan 2.149 2.694 2.383 1.180 2.067 0.677 0.324 0.896 0.502 1.124 6.022 1.320 0.130 2.681 2.432 1.341 2.028 2.639 2.474 nan 2.358 3.961 4.366 1.626 nan 2.427 3.433 2.484 2.258 1.192 1.753 2.450 2.548 1.893 2.123 2.256 1.072 1.130 2.885 0.374 0.872 2.067 1.124 0.797 0.985 0.405 0.494 1573 chr20 4128897 4156357 + 0 NA intron (NM_175842, intron 1 of 8) intron (NM_175842, intron 1 of 8) 13201 NM_175841 54498 Hs.433337 NM_175839 ENSG00000088826 SMOX C20orf16|PAO|PAO-1|PAO1|PAOH|PAOH1|SMO spermine oxidase protein-coding 1.166 1.265 0.867 0.179 0.555 0.357 0.559 0.324 0.108 0.222 0.102 0.117 1.311 0.269 0.062 4.539 6.166 1.205 1.479 1.051 0.920 0.457 0.141 1.070 1.201 0.382 0.694 1.402 1.809 0.827 0.622 2.231 3.367 0.112 0.149 0.437 0.773 0.609 0.500 0.700 0.424 0.028 0.040 0.559 0.117 0.383 0.372 1.424 0.121 298 chr1 226055897 226087164 + 0 NA Intergenic Intergenic -1110 NM_014698 9725 Hs.119387 NM_014698 ENSG00000196187 TMEM63A KIAA0792 transmembrane protein 63A protein-coding 1.533 nan 1.758 1.720 1.707 0.810 0.417 0.534 0.226 0.447 0.286 2.257 0.874 0.562 0.088 1.432 2.453 2.227 6.225 1.215 nan 2.294 0.667 1.536 1.567 0.298 0.545 3.734 2.982 0.708 0.573 0.627 1.008 0.454 0.672 0.628 1.632 1.351 0.834 0.342 0.110 0.100 0.312 0.417 2.257 0.100 0.230 0.560 0.289 1729 chr22 38899238 38904047 + 0 NA intron (NM_006386, intron 1 of 12) CpG 703 NM_001098504 10521 Hs.528305 NM_006386 ENSG00000100201 DDX17 P72|RH70 DEAD-box helicase 17 protein-coding 7.647 nan 4.527 4.872 8.245 4.504 7.194 3.153 0.430 2.675 1.246 9.995 9.861 8.261 0.259 8.658 7.501 10.361 14.702 7.356 6.679 9.020 7.504 16.503 16.196 4.985 6.736 8.747 15.902 nan 15.426 7.429 9.217 8.962 12.426 11.421 7.312 2.254 1.044 3.041 5.100 2.855 4.780 7.194 9.995 2.398 4.313 3.056 3.698 1390 chr2 2321284 2338416 + 0 NA promoter-TSS (NM_001329847) promoter-TSS (NM_001329847) 93 NM_001329847 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 0.736 1.235 0.606 0.258 6.848 3.606 3.911 0.083 0.075 4.952 2.703 6.345 22.148 0.038 0.098 3.735 5.806 0.143 0.120 12.578 11.806 7.053 5.021 0.121 0.107 5.504 6.387 5.916 7.583 7.938 9.625 0.829 1.561 5.496 4.501 2.395 2.660 5.305 2.823 6.881 0.406 1.128 1.207 3.911 6.345 2.624 2.835 1.028 0.080 1782 chr3 101034985 101057933 + 0 NA intron (NM_001077203, intron 22 of 22) intron (NM_001077203, intron 22 of 22) -7040 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding nan nan 1.281 0.115 0.417 0.188 0.066 0.241 0.078 0.095 0.165 0.172 0.214 0.066 0.080 0.277 0.201 0.145 0.242 0.265 0.342 0.243 0.129 0.342 0.325 0.595 0.756 0.246 0.286 1.622 0.766 0.166 0.246 0.057 0.039 5.997 7.613 0.411 0.385 0.041 0.050 0.004 0.048 0.066 0.172 0.008 0.031 0.052 4.132 1698 chr21 47736285 47748164 + 0 NA intron (NM_001286477, intron 1 of 7) intron (NM_001286477, intron 1 of 7) -1485 NM_001286462 54058 Hs.236572 NM_058180 ENSG00000160298 C21orf58 - chromosome 21 open reading frame 58 protein-coding nan 2.645 6.579 3.925 3.443 1.918 2.554 1.221 0.263 1.655 0.610 4.653 9.294 2.086 0.114 4.343 4.613 4.738 5.693 6.230 6.282 nan 2.037 6.193 5.720 2.805 nan 4.413 7.548 5.398 5.976 2.304 3.935 2.442 2.767 4.527 3.431 3.139 1.853 3.189 5.194 0.677 2.543 2.554 4.653 1.104 1.349 1.433 1.062 1532 chr2 213212657 213233920 + 0 NA intron (NM_005235, intron 1 of 27) intron (NM_005235, intron 1 of 27) 67796 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA nan 0.965 nan 0.140 0.244 0.204 0.127 0.094 0.068 0.067 0.097 0.085 0.295 0.113 0.030 0.880 0.801 4.149 5.203 0.192 0.238 1.906 0.812 0.521 0.612 5.170 6.058 0.485 nan 0.380 0.168 0.519 0.804 1.148 2.390 0.363 0.556 0.221 0.278 0.038 0.059 0.352 0.235 0.127 0.085 0.036 0.038 0.453 0.117 1953 chr5 17213785 17230766 + 0 NA intron (NM_006317, intron 1 of 1) intron (NM_006317, intron 1 of 1) 4605 NM_006317 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding nan nan nan 0.316 1.416 0.622 1.450 0.322 0.198 2.302 1.495 1.890 nan 0.103 0.111 0.258 0.134 1.492 1.928 5.392 4.701 2.519 0.731 1.878 1.808 nan 2.686 1.475 2.325 1.968 1.654 0.710 1.769 0.609 0.523 0.655 nan 3.164 1.725 1.180 0.032 0.129 0.032 1.450 1.890 0.268 0.060 0.685 0.203 444 chr11 47289533 47295551 + 0 NA intron (NR_120569, intron 2 of 2) intron (NR_120569, intron 2 of 2) 871 NM_001135943 8567 Hs.82548 NM_003682 ENSG00000110514 MADD DENN|IG20|RAB3GEP MAP kinase activating death domain protein-coding 2.665 3.654 2.610 5.270 3.846 1.785 2.677 1.559 0.120 3.118 1.298 4.803 7.785 2.315 0.130 6.544 8.663 3.584 4.550 10.508 9.274 8.368 2.884 4.624 4.728 3.110 3.947 2.616 3.915 3.130 3.677 3.459 6.378 3.818 4.372 2.899 nan 3.021 1.329 3.538 7.637 1.316 2.094 2.677 4.803 1.411 2.833 3.390 1.460 2586 chrX 24893673 24909648 + 0 NA intron (NM_016937, intron 34 of 36) intron (NM_016937, intron 34 of 36) 132405 NM_139058 170302 Hs.300304 NM_139058 ENSG00000004848 ARX CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS aristaless related homeobox protein-coding 0.713 0.837 0.506 0.160 0.345 0.171 0.128 0.109 0.081 0.366 0.221 0.090 0.300 0.149 0.046 0.089 0.077 0.496 0.797 0.305 0.333 2.532 2.821 0.443 0.358 0.330 0.554 0.391 0.696 0.325 0.233 0.144 0.209 0.740 0.828 0.278 0.632 0.685 0.533 0.038 0.072 0.079 0.055 0.128 0.090 0.031 0.031 0.037 0.112 2146 chr6 51136242 51169389 + 0 NA Intergenic Intergenic -333853 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 0.773 0.863 nan 0.217 0.381 0.221 0.247 0.077 0.095 0.047 0.075 0.269 0.448 0.033 0.108 0.605 0.413 6.069 6.192 0.380 0.450 0.135 0.098 0.325 0.302 0.152 0.237 0.196 0.226 0.242 0.080 0.188 0.320 0.158 0.161 0.271 0.456 0.147 0.262 0.022 0.097 0.023 0.118 0.247 0.269 0.015 0.007 0.105 0.075 1137 chr17 78799236 78814996 + 0 NA intron (NM_001163034, intron 9 of 29) intron (NM_001163034, intron 9 of 29) -27684 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 2.670 1.734 2.920 1.098 1.172 0.484 3.987 0.930 0.256 1.171 0.508 1.595 4.007 0.089 0.126 1.715 1.798 1.219 1.781 3.374 2.399 2.872 0.892 0.977 1.048 nan 4.670 2.628 4.137 2.976 2.891 0.966 1.370 1.821 2.623 1.848 2.286 nan 1.262 0.704 1.805 0.241 0.663 3.987 1.595 0.985 4.872 0.572 0.801 1395 chr2 3651468 3659791 + 0 NA intron (NM_001255989, intron 1 of 3) intron (NM_001255989, intron 1 of 3) 1987 NM_001255989 78989 Hs.32603 NM_024027 ENSG00000118004 COLEC11 3MC2|CL-K1-I|CL-K1-II|CL-K1-IIa|CL-K1-IIb|CLK1 collectin subfamily member 11 protein-coding 1.339 0.565 0.835 2.646 6.086 3.005 1.395 0.124 0.096 0.324 0.156 0.676 1.272 1.019 0.117 2.290 2.544 0.652 1.020 0.899 0.750 1.080 0.442 1.451 1.266 1.318 1.521 10.847 10.566 2.364 1.566 1.171 1.242 0.484 0.450 1.472 3.191 2.224 0.968 0.906 6.603 0.034 0.285 1.395 0.676 0.695 2.686 0.595 0.896 204 chr1 155879273 155882597 + 0 NA promoter-TSS (NM_001256821) promoter-TSS (NM_001256821) -229 NM_001256821 6016 Hs.491234 NM_006912 ENSG00000143622 RIT1 NS8|RIBB|RIT|ROC1 Ras like without CAAX 1 protein-coding nan nan 2.356 1.399 2.469 1.148 1.331 2.282 0.388 2.146 0.848 1.994 19.348 2.055 0.156 1.721 3.493 4.079 5.681 4.805 nan 4.860 1.785 0.256 0.378 2.178 3.128 3.363 3.812 2.135 2.193 1.833 4.080 1.916 2.165 2.421 3.486 1.674 0.871 1.218 2.567 0.315 1.214 1.331 1.994 0.437 3.330 1.183 0.853 68 chr1 28831348 28847698 + 0 NA intron (NM_001048199, intron 3 of 11) AluYc|SINE|Alu 4453 NR_004404 26768 NR_004404 SNORA73B 105A|E1c|RNU105A|RNU17B|U17B small nucleolar RNA, H/ACA box 73B snoRNA 3.175 1.860 nan 2.773 2.749 1.475 1.868 1.148 0.467 1.249 0.885 1.106 4.016 3.584 0.273 3.860 3.910 3.344 5.438 3.530 4.049 3.509 1.463 6.419 6.390 3.462 5.548 4.857 5.179 6.545 7.191 1.983 4.067 1.614 1.724 13.038 9.523 2.160 1.169 1.122 1.190 0.285 0.742 1.868 1.106 0.531 1.242 1.124 3.639 383 chr10 131659291 131689009 + 0 NA intron (NM_001005463, intron 7 of 15) intron (NM_001005463, intron 7 of 15) -32512 NR_036179 100422873 NR_036179 ENSG00000266676 MIR4297 - microRNA 4297 ncRNA 1.108 0.669 1.907 0.042 4.283 2.649 0.604 0.066 0.060 0.116 0.061 1.388 0.432 0.036 0.088 1.998 2.734 0.119 0.184 1.096 0.926 0.056 0.036 0.383 0.391 0.584 0.836 0.113 0.127 0.644 0.953 0.663 1.058 0.946 0.710 1.769 2.668 1.567 0.867 0.127 0.069 0.388 2.111 0.604 1.388 0.588 0.038 1.034 0.506 202 chr1 155655988 155684859 + 0 NA intron (NM_033657, intron 1 of 12) SVA_F|Other|Other 11538 NM_004632 7818 Hs.516746 NM_004632 ENSG00000132676 DAP3 DAP-3|MRP-S29|MRPS29|bMRP-10 death associated protein 3 protein-coding nan nan 2.068 0.938 1.020 0.444 1.225 1.068 0.260 0.838 0.530 1.148 3.691 0.996 0.165 1.772 1.799 2.085 3.143 2.344 nan 2.043 1.123 2.069 2.120 1.293 1.851 1.569 2.622 1.711 1.750 2.660 3.968 1.093 1.464 4.246 7.617 0.864 0.548 0.757 1.858 0.332 0.621 1.225 1.148 0.361 1.179 1.221 2.599 1597 chr20 25010775 25026625 + 0 NA intron (NM_032501, intron 2 of 13) intron (NM_032501, intron 2 of 13) -5358 NM_001252676 84532 Hs.529353 NM_032501 ENSG00000154930 ACSS1 ACAS2L|ACECS1|AceCS2L acyl-CoA synthetase short-chain family member 1 protein-coding 1.124 2.196 nan 0.138 0.191 0.108 0.219 0.415 0.141 0.099 0.067 0.168 1.080 0.069 0.098 3.871 6.659 3.026 4.838 0.449 0.497 0.758 0.228 0.308 0.346 0.253 0.475 1.779 1.708 1.295 1.179 1.579 1.817 0.195 0.209 0.274 0.377 0.488 0.491 0.562 0.067 0.042 0.040 0.219 0.168 0.195 0.090 0.676 0.141 839 chr14 102548382 102565543 + 0 NA intron (NM_001017963, intron 2 of 11) AluY|SINE|Alu -3450 NM_005348 3320 Hs.525600 NM_005348 ENSG00000080824 HSP90AA1 EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2 heat shock protein 90 alpha family class A member 1 protein-coding 3.200 2.010 2.341 2.634 2.602 1.356 2.555 1.246 0.320 1.080 0.620 2.056 4.393 2.019 0.127 1.752 2.010 1.970 3.467 5.216 5.072 2.134 1.292 2.364 2.458 1.614 2.549 3.762 5.115 4.217 3.731 2.599 5.175 2.201 2.149 1.996 1.992 1.418 0.801 4.400 1.753 0.464 1.426 2.555 2.056 0.516 0.810 0.578 0.802 1882 chr4 10519871 10532594 + 0 NA intron (NM_052964, intron 14 of 18) intron (NM_052964, intron 14 of 18) -67200 NM_053042 85460 Hs.455089 NM_053042 ENSG00000178163 ZNF518B - zinc finger protein 518B protein-coding nan nan nan 0.278 0.313 0.139 0.578 0.035 0.063 0.883 0.233 1.092 0.207 0.008 0.059 0.314 0.173 0.224 0.953 0.504 0.624 2.991 2.984 0.204 0.178 0.106 0.174 0.288 0.409 0.476 0.341 0.133 0.137 1.148 0.997 0.170 0.541 4.338 1.972 0.039 0.295 0.075 0.237 0.578 1.092 0.030 0.031 0.058 390 chr11 742638 750009 + 0 NA Intergenic AluSq|SINE|Alu -1109 NM_006755 6888 Hs.438678 NM_006755 ENSG00000177156 TALDO1 TAL|TAL-H|TALDOR|TALH transaldolase 1 protein-coding 1.867 2.581 2.869 1.266 1.823 0.799 1.445 1.115 0.328 1.336 0.618 3.602 3.657 0.897 0.057 8.407 9.716 2.910 4.596 3.661 4.091 3.448 1.112 4.740 4.764 1.506 2.359 2.726 4.853 2.017 1.848 2.692 4.755 1.302 1.675 1.024 1.726 1.567 0.824 0.683 1.973 0.310 0.562 1.445 3.602 0.252 1.187 1.076 0.572 656 chr12 106720170 106737396 + 0 NA intron (NM_152772, intron 6 of 9) intron (NM_152772, intron 6 of 9) -22653 NM_018082 55703 Hs.62696 NM_018082 ENSG00000013503 POLR3B C128|HLD8|INMAP|RPC2 RNA polymerase III subunit B protein-coding 1.568 0.981 nan 0.143 1.358 0.711 0.306 0.265 0.112 0.275 0.317 0.423 1.454 0.069 0.149 0.301 0.256 0.357 0.448 0.841 0.917 0.953 0.427 0.332 0.357 1.396 1.814 0.393 0.469 0.862 0.623 0.211 0.298 3.138 3.485 0.377 0.492 4.495 1.915 0.361 0.415 1.068 0.092 0.306 0.423 0.327 0.035 0.092 0.076 835 chr14 99878316 99895239 + 0 NA intron (NM_199123, intron 6 of 8) intron (NM_199123, intron 6 of 8) 60449 NM_032233 84193 Hs.510407 NM_032233 ENSG00000183576 SETD3 C14orf154 SET domain containing 3 protein-coding 1.627 0.918 1.266 0.161 0.458 0.256 0.546 0.207 0.067 0.239 0.148 0.218 0.382 0.140 0.149 0.454 0.708 0.226 0.439 0.672 0.891 1.047 0.211 0.179 0.207 0.906 1.183 1.418 1.189 2.003 2.010 0.412 1.012 0.224 0.196 2.014 5.915 1.955 0.914 0.618 0.275 0.045 0.118 0.546 0.218 0.046 0.226 0.333 1.957 2153 chr6 76641332 76656963 + 0 NA intron (NM_001563, intron 14 of 16) L1PA4|LINE|L1 133248 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding nan nan 2.144 0.241 0.289 0.062 0.441 0.163 0.168 0.079 0.104 0.153 0.396 0.076 0.134 0.452 0.413 3.040 2.537 0.343 0.353 9.346 2.972 0.267 0.254 0.079 0.148 0.170 0.203 0.329 0.102 0.192 0.296 2.024 1.987 0.194 0.422 0.689 0.575 0.022 0.045 0.510 0.710 0.441 0.153 0.006 0.137 0.025 0.079 846 chr14 105788941 105818818 + 0 NA intron (NM_015197, intron 1 of 23) intron (NM_015197, intron 1 of 23) -21965 NM_001242787 2972 Hs.424484 NM_001519 ENSG00000185024 BRF1 BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF BRF1, RNA polymerase III transcription initiation factor subunit protein-coding 1.442 0.616 2.212 0.493 0.322 0.222 0.875 0.293 0.097 0.163 0.225 0.257 1.013 0.134 0.078 2.436 3.500 0.304 0.517 1.466 1.183 1.429 0.467 0.600 0.585 0.743 1.168 0.560 0.794 0.787 0.793 1.613 1.357 0.334 0.399 0.234 0.351 0.145 0.130 0.524 0.199 0.076 0.154 0.875 0.257 0.235 0.214 0.689 0.050 36 chr1 10993769 11051174 + 0 NA intron (NM_001170754, intron 5 of 12) AluSz|SINE|Alu 19623 NM_001170754 148345 Hs.127026 NM_173507 ENSG00000175262 C1orf127 - chromosome 1 open reading frame 127 protein-coding 1.175 1.073 nan 5.525 0.616 0.301 0.514 0.213 0.188 0.478 0.256 0.894 2.480 0.102 0.091 0.507 0.712 0.374 0.558 2.796 3.205 1.626 0.442 1.601 nan 0.310 nan 10.181 9.022 nan 0.498 0.539 0.605 0.499 0.437 0.500 1.298 1.890 0.917 1.022 1.228 0.147 0.039 0.514 0.894 0.139 0.743 0.222 0.179 2523 chr9 99175403 99183804 + 0 NA intron (NM_153695, intron 1 of 4) CpG 1066 NM_153695 195828 Hs.494557 NM_153695 ENSG00000165244 ZNF367 AFF29|CDC14B|ZFF29 zinc finger protein 367 protein-coding 4.622 nan 5.312 7.729 5.364 2.947 3.910 1.863 0.200 2.501 1.074 5.576 10.565 3.581 0.082 3.170 3.939 5.042 nan 8.605 7.095 4.267 2.397 4.824 4.483 2.213 2.769 5.746 9.656 7.394 8.240 1.811 4.122 6.609 7.613 4.292 4.163 2.842 1.417 3.011 2.988 2.185 3.088 3.910 5.576 1.040 2.851 1.930 1.202 289 chr1 213820706 213855044 + 0 NA Intergenic MLT1M|LTR|ERVL-MaLR -260217 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 1.073 1.282 1.203 3.103 1.104 0.675 0.254 0.100 0.142 0.963 0.554 3.085 nan 0.042 0.100 0.437 0.336 0.367 0.468 2.110 2.710 nan 0.727 0.788 0.826 0.289 nan 4.979 3.878 0.561 0.367 0.118 0.175 0.379 0.396 0.393 0.926 1.429 0.807 0.076 0.635 0.089 0.081 0.254 3.085 0.051 0.314 0.040 0.227 920 chr16 2084742 2110766 + 0 NA promoter-TSS (NM_001318829) promoter-TSS (NM_001318829) 116 NM_001318193 4913 Hs.66196 NM_002528 ENSG00000065057 NTHL1 FAP3|NTH1|OCTS3|hNTH1 nth like DNA glycosylase 1 protein-coding 1.037 nan 1.237 3.599 1.069 0.437 0.721 0.355 0.183 1.362 0.575 1.826 3.617 0.457 0.107 0.792 1.430 0.315 0.541 2.057 2.000 nan 0.507 2.132 2.127 0.525 nan 4.706 5.140 0.851 0.735 0.723 1.003 0.934 0.747 0.557 0.846 1.848 0.989 4.799 8.649 0.121 0.553 0.721 1.826 0.467 0.939 0.516 0.201 2511 chr9 37983200 37989257 + 0 NA intron (NM_003028, intron 2 of 5) intron (NM_003028, intron 2 of 5) -81878 NM_033412 92014 Hs.634120 NM_033412 ENSG00000122696 SLC25A51 CG7943|MCART1 solute carrier family 25 member 51 protein-coding 1.075 nan 2.374 0.645 1.298 0.561 0.641 0.606 0.080 1.319 0.596 0.823 1.397 0.126 0.063 0.394 0.682 0.521 0.890 0.624 0.544 2.631 0.700 0.301 0.307 1.398 2.145 1.119 1.637 2.414 1.850 0.705 1.390 2.575 3.474 0.421 0.537 7.817 3.849 0.812 0.168 0.968 0.637 0.641 0.823 0.402 4.461 1.175 0.186 2370 chr8 60012142 60037449 + 0 NA intron (NM_014729, intron 1 of 8) intron (NM_014729, intron 1 of 8) 6972 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 2.948 2.543 2.567 3.370 5.844 2.865 2.165 0.101 0.071 1.710 0.840 3.696 7.444 0.205 0.069 1.862 2.847 0.374 0.420 9.420 7.061 1.874 0.921 0.086 0.097 3.436 nan 1.239 1.783 nan 0.474 0.085 0.141 6.176 6.052 0.132 0.221 3.707 1.871 2.257 3.041 1.780 2.693 2.165 3.696 0.061 2.981 0.035 0.102 2544 chr9 128506242 128527260 + 0 NA intron (NR_024123, intron 2 of 6) intron (NR_024123, intron 2 of 6) 6273 NM_001134778 5090 Hs.428027 NM_006195 ENSG00000167081 PBX3 - PBX homeobox 3 protein-coding nan nan 1.547 2.813 2.813 1.479 1.770 0.833 0.154 1.337 1.000 1.887 nan 1.002 0.128 0.172 0.195 0.568 0.760 3.191 2.805 2.588 1.141 0.862 0.834 1.683 nan 2.561 4.018 5.759 4.564 0.162 0.299 3.019 2.791 3.424 4.684 nan 1.071 1.611 2.501 0.829 1.075 1.770 1.887 0.521 1.507 0.043 1.532 2327 chr7 141479863 141497933 + 0 NA Intergenic Intergenic -1119 NM_018980 54429 Hs.675370 NM_018980 ENSG00000127366 TAS2R5 T2R5 taste 2 receptor member 5 protein-coding 0.806 0.576 0.754 0.099 0.284 0.115 0.104 0.128 0.090 0.268 0.165 0.122 0.247 0.099 0.142 1.369 1.099 0.463 0.341 0.360 0.480 0.618 0.198 21.822 23.207 0.257 0.401 0.340 0.358 0.357 0.228 0.999 1.721 0.102 0.127 0.304 0.709 0.935 nan 0.059 0.122 0.016 0.071 0.104 0.122 0.090 0.759 0.061 2581 chrX 10570606 10605955 + 0 NA intron (NM_033290, intron 1 of 9) CpG 394 NM_000381 4281 Hs.27695 NM_000381 ENSG00000101871 MID1 BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY midline 1 protein-coding 0.825 nan 1.087 0.541 0.238 0.129 0.367 1.332 0.159 0.262 0.222 0.166 0.683 2.688 0.091 0.380 0.290 2.213 4.968 0.548 0.508 1.244 0.612 0.809 0.764 0.167 0.295 1.097 2.020 0.643 0.376 1.296 1.276 0.116 0.240 0.424 0.784 0.478 0.499 0.027 0.154 0.027 0.124 0.367 0.166 0.091 0.181 0.545 0.188 918 chr16 1819991 1824585 + 0 NA promoter-TSS (NM_002513) promoter-TSS (NM_002513) -578 NM_002513 4832 Hs.514065 NM_002513 ENSG00000103024 NME3 DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2 NME/NM23 nucleoside diphosphate kinase 3 protein-coding 3.359 nan 3.150 5.653 2.779 1.818 4.967 0.957 0.175 2.616 1.355 6.675 6.347 3.774 0.053 4.129 5.111 2.527 3.884 3.445 2.951 nan 2.927 6.873 7.037 2.339 nan 4.516 6.881 3.455 4.380 2.145 4.391 4.281 3.969 3.421 3.088 3.382 1.952 2.965 10.425 0.744 1.744 4.967 6.675 2.756 2.278 0.933 0.721 199 chr1 155212243 155215696 + 0 NA intron (NM_001005741, intron 1 of 11) AluSx3|SINE|Alu 684 NM_001171811 2629 Hs.282997 NM_000157 ENSG00000177628 GBA GBA1|GCB|GLUC glucosylceramidase beta protein-coding 6.955 5.307 5.617 5.503 5.787 2.838 5.104 5.055 2.047 1.228 0.709 6.198 22.802 4.707 0.394 6.601 6.583 5.274 7.526 10.963 9.212 10.134 4.495 3.313 3.710 7.885 9.213 7.657 12.622 7.523 7.374 5.075 6.468 7.087 7.734 9.103 12.578 3.353 1.738 6.441 10.105 1.630 4.773 5.104 6.198 2.251 6.303 2.667 4.054 1808 chr3 133088815 133104191 + 0 NA intron (NM_001282865, intron 2 of 3) intron (NM_001282865, intron 2 of 3) -22336 NM_003571 8419 Hs.659862 NM_003571 ENSG00000170819 BFSP2 CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN beaded filament structural protein 2 protein-coding 0.986 nan nan 0.132 0.635 0.251 0.369 0.321 0.137 0.194 0.125 0.327 0.299 0.014 0.089 1.089 1.059 9.372 5.063 0.809 0.827 1.164 0.447 1.985 2.181 0.645 1.204 0.222 0.377 nan 0.618 0.190 0.426 0.076 0.182 0.596 1.383 1.052 0.720 0.065 0.126 0.025 0.093 0.369 0.327 0.089 0.020 0.026 0.546 2325 chr7 141394915 141411314 + 0 NA Intergenic Intergenic -1161 NM_001080392 57189 Hs.521240 NM_001080392 ENSG00000257093 KIAA1147 LCHN|PRO2561 KIAA1147 protein-coding 1.366 0.771 2.021 0.832 1.277 0.696 0.953 0.301 0.069 0.686 0.371 1.658 1.629 0.372 0.185 1.413 1.977 0.880 1.359 1.537 1.561 5.764 1.612 5.115 4.662 0.599 0.854 1.167 1.304 1.096 1.012 1.103 2.230 2.461 2.092 0.733 1.103 2.304 nan 0.408 0.615 0.595 0.483 0.953 1.658 0.144 0.538 0.706 0.227 2166 chr6 113905496 113921819 + 0 NA Intergenic Arthur1C|DNA|hAT-Tip100 57620 NR_125844 101927686 Hs.402044 NR_125844 ENSG00000230943 LOC101927686 - uncharacterized LOC101927686 ncRNA nan 1.630 nan 1.340 4.291 2.571 1.613 0.899 0.236 0.157 0.110 1.175 1.424 0.259 0.127 0.480 0.437 0.449 1.285 2.907 nan nan 1.242 0.239 0.246 1.144 nan 0.693 0.586 0.532 0.322 0.191 0.417 0.789 0.662 0.309 nan 0.637 0.509 0.328 0.229 0.181 0.576 1.613 1.175 0.264 0.224 0.428 0.122 1725 chr22 37928855 37942841 + 0 NA Intergenic MLT1D|LTR|ERVL-MaLR -20623 NM_152243 11135 Hs.225356 NM_152243 ENSG00000128283 CDC42EP1 BORG5|CEP1|MSE55 CDC42 effector protein 1 protein-coding 1.578 nan 0.581 0.088 0.336 0.206 0.412 0.529 0.229 0.078 0.095 0.215 0.553 0.319 0.119 1.197 1.515 2.891 6.485 0.424 0.480 0.264 0.090 0.320 0.372 0.332 nan 0.279 0.306 nan 1.603 0.458 0.520 0.104 0.175 0.250 0.491 0.483 0.451 0.072 0.121 0.014 0.608 0.412 0.215 0.528 0.199 0.178 0.062 680 chr12 124607486 124620548 + 0 NA intron (NM_001204299, intron 2 of 4) AluJb|SINE|Alu 156255 NM_001204298 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 0.992 1.366 0.770 1.073 0.787 0.283 1.096 0.069 0.197 0.804 0.680 1.615 2.038 0.092 0.173 0.350 0.419 0.246 0.333 1.469 1.527 nan 2.143 0.220 0.238 0.385 0.614 3.095 3.728 0.555 0.330 0.413 0.579 1.054 1.214 0.281 0.711 2.145 1.133 0.033 0.790 0.289 0.054 1.096 1.615 0.066 1.266 0.464 0.058 320 chr1 245965591 245978002 + 0 NA intron (NM_001167740, intron 10 of 11) intron (NM_001167740, intron 10 of 11) 608918 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding nan 3.278 nan 0.613 2.409 1.156 0.628 0.239 0.207 0.603 0.477 0.868 2.235 0.069 0.107 1.759 2.128 3.027 2.113 0.996 1.009 7.855 1.962 2.243 2.188 0.513 0.820 2.125 3.127 1.926 2.225 1.821 2.638 0.432 0.399 0.613 1.290 0.735 0.738 1.580 1.960 0.046 0.123 0.628 0.868 0.650 0.115 4.111 0.460 1735 chr22 41830006 41846182 + 0 NA intron (NM_016272, intron 1 of 1) AluSx|SINE|Alu 4933 NM_016272 10766 Hs.474978 NM_016272 ENSG00000183864 TOB2 APRO5|TOB4|TOBL|TROB2 transducer of ERBB2, 2 protein-coding 3.624 nan 2.372 2.161 4.190 2.256 2.911 1.414 0.308 1.297 0.607 3.418 4.304 3.825 0.149 2.305 3.165 3.094 4.538 3.813 3.483 3.345 1.289 3.550 3.371 2.587 nan 3.338 4.064 nan 5.163 0.931 2.422 3.842 3.737 2.602 5.445 1.367 0.802 1.315 1.992 1.204 1.718 2.911 3.418 1.296 2.155 1.019 2.402 2422 chr8 124726099 124741096 + 0 NA intron (NM_004306, intron 1 of 10) intron (NM_004306, intron 1 of 10) 16069 NM_004306 312 Hs.181107 NM_004306 ENSG00000104537 ANXA13 ANX13|ISA annexin A13 protein-coding nan nan nan 1.086 0.507 0.235 0.217 0.225 0.032 0.052 0.069 0.263 nan 0.022 0.071 0.595 1.182 0.357 0.376 0.707 0.782 1.311 0.525 nan nan 0.232 0.420 2.453 2.376 0.416 0.327 1.057 1.720 0.640 0.596 0.252 0.385 1.287 0.875 0.941 0.305 0.118 0.058 0.217 0.263 0.180 0.614 1.352 0.165 1548 chr2 232326703 232335772 + 0 NA Intergenic Intergenic -2032 NM_005381 4691 Hs.79110 NM_005381 ENSG00000115053 NCL C23 nucleolin protein-coding 4.325 nan 3.849 3.722 3.173 1.610 2.576 0.777 0.143 1.478 0.519 3.157 5.526 3.104 0.134 5.406 5.348 3.964 5.314 4.710 4.291 4.241 2.249 8.386 8.131 2.685 3.649 8.474 nan 6.828 9.236 3.488 6.070 2.983 2.733 7.250 6.347 1.840 1.123 2.343 1.674 0.440 1.194 2.576 3.157 0.652 1.645 1.646 1.965 1903 chr4 77405290 77547928 + 0 NA intron (NM_020859, intron 1 of 10) intron (NM_020859, intron 1 of 10) -18112 NR_039654 100616299 NR_039654 ENSG00000263445 MIR4450 mir-4450 microRNA 4450 ncRNA 0.679 0.656 0.564 0.315 0.692 0.412 0.189 0.440 0.123 0.155 0.134 0.477 0.435 3.711 0.151 0.314 0.184 0.536 1.969 0.328 0.411 1.119 0.405 0.303 0.307 0.157 0.255 1.040 1.096 0.380 0.225 0.144 0.194 0.184 0.167 0.122 0.245 0.662 0.498 0.058 0.169 0.025 0.082 0.189 0.477 0.014 0.132 0.060 0.055 923 chr16 2458072 2480789 + 0 NA intron (NR_003574, intron 13 of 16) L1MB8|LINE|L1 -9962 NM_001323538 899 Hs.1973 NM_001761 ENSG00000162063 CCNF FBX1|FBXO1 cyclin F protein-coding 1.303 nan 1.256 1.479 0.847 0.516 0.786 0.295 0.184 0.346 0.212 0.561 2.723 0.468 0.091 0.918 0.908 0.533 0.760 1.028 1.075 nan 1.030 1.290 1.297 0.769 nan 1.030 1.363 1.530 1.430 0.299 0.636 0.970 0.990 0.855 1.342 1.247 0.676 0.444 1.433 0.243 0.479 0.786 0.561 0.290 0.608 0.127 0.396 157 chr1 109395735 109409820 + 0 NA Intergenic Intergenic -1913 NR_049760 254268 Hs.729441 NM_152763 ENSG00000162641 AKNAD1 C1orf62 AKNA domain containing 1 protein-coding 1.720 nan nan 0.069 0.200 0.171 0.227 0.233 0.125 0.056 0.087 1.245 0.320 0.046 0.110 0.312 0.317 0.194 0.213 0.675 nan 0.457 0.215 0.326 0.338 1.425 1.920 nan nan 1.021 0.485 0.205 0.268 0.106 0.094 1.509 nan 0.320 0.365 0.039 0.120 0.013 4.017 0.227 1.245 0.318 0.073 0.183 2.718 2193 chr6 156656600 156671895 + 0 NA Intergenic Intergenic 396316 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA nan 0.542 0.757 3.569 0.588 0.252 0.346 0.083 0.031 0.287 0.281 2.097 2.572 0.049 0.110 0.412 0.356 0.179 0.225 1.772 nan 6.051 1.561 0.243 0.259 0.077 0.160 1.865 2.324 1.776 1.796 0.167 0.219 1.398 0.971 0.157 nan 0.856 0.522 1.515 0.580 0.231 0.083 0.346 2.097 0.195 0.611 0.045 0.069 313 chr1 235488332 235495243 + 0 NA promoter-TSS (NM_001206794) promoter-TSS (NM_001206794) 34 NM_001037277 9453 Hs.730768 NM_004837 ENSG00000152904 GGPS1 GGPPS|GGPPS1 geranylgeranyl diphosphate synthase 1 protein-coding 6.928 5.570 4.502 6.474 5.760 3.314 3.693 3.653 0.280 4.191 2.372 5.245 8.712 3.972 0.157 5.548 5.681 10.562 15.953 11.619 10.068 nan 3.513 18.590 19.225 4.255 5.224 nan 7.920 6.334 6.842 2.037 4.597 2.307 2.842 6.852 8.222 nan 1.441 3.619 3.072 0.386 2.502 3.693 5.245 0.958 2.473 0.920 1.823 1176 chr18 42255320 42264278 + 0 NA promoter-TSS (NM_001130110) promoter-TSS (NM_001130110) -339 NM_001130110 26040 Hs.435458 NM_015559 ENSG00000152217 SETBP1 MRD29|SEB SET binding protein 1 protein-coding nan 2.544 0.842 3.367 3.183 1.571 9.074 1.480 0.109 1.486 0.889 4.615 8.180 0.072 0.057 3.740 4.937 3.429 4.451 9.687 7.684 3.310 1.537 0.103 0.074 1.892 2.595 1.986 3.535 4.722 5.698 1.524 3.794 5.330 4.665 0.697 nan 4.659 2.312 4.332 1.340 2.287 3.590 9.074 4.615 1.560 1.700 1.907 0.551 172 chr1 145573749 145577849 + 0 NA promoter-TSS (NM_006099) promoter-TSS (NM_006099) -189 NM_006099 10401 Hs.435761 NM_006099 ENSG00000131788 PIAS3 ZMIZ5 protein inhibitor of activated STAT 3 protein-coding 3.620 nan 3.091 2.483 1.592 0.821 2.565 2.116 0.078 1.940 0.806 3.261 18.862 3.177 0.149 1.244 1.769 2.943 3.546 5.618 4.589 4.454 1.130 1.618 2.119 2.193 3.103 3.911 4.976 1.629 1.848 1.544 2.861 2.820 2.117 2.449 4.376 2.172 1.067 1.286 4.948 0.763 1.838 2.565 3.261 0.423 2.322 0.872 1.173 242 chr1 170652391 170673120 + 0 NA intron (NM_006902, intron 1 of 4) intron (NM_006902, intron 1 of 4) 29442 NM_022716 5396 Hs.283416 NM_006902 ENSG00000116132 PRRX1 AGOTC|PHOX1|PMX1|PRX-1|PRX1 paired related homeobox 1 protein-coding nan nan nan 0.149 0.142 0.101 0.284 4.315 0.348 0.076 0.101 0.040 0.291 0.047 0.094 0.304 0.194 0.449 0.586 nan 0.560 0.122 0.069 0.073 0.059 3.183 3.518 0.333 0.312 0.484 0.285 0.264 0.457 0.063 0.078 0.531 nan 0.194 0.396 0.048 0.308 0.014 0.023 0.284 0.040 0.009 0.049 0.081 0.244 594 chr12 31158765 31164547 + 0 NA Intergenic Intergenic -65123 NM_152438 1663 Hs.443960 NM_004399 ENSG00000013573 DDX11 CHL1|CHLR1|KRG2|WABS DEAD/H-box helicase 11 protein-coding 2.572 nan 3.563 0.213 0.211 0.166 0.072 0.066 0.056 0.162 0.074 0.097 0.358 0.044 0.091 0.635 0.969 0.295 0.486 0.854 0.938 0.847 0.325 0.537 0.670 0.533 0.900 0.425 0.886 10.766 13.866 0.285 0.271 2.907 2.678 0.889 1.830 0.547 0.515 0.067 0.134 0.686 0.122 0.072 0.097 1.085 0.389 0.035 0.597 784 chr14 39637784 39647006 + 0 NA Intergenic AluJr|SINE|Alu -1992 NM_002687 5411 Hs.409965 NM_002687 ENSG00000100941 PNN DRS|DRSP|SDK3|memA pinin, desmosome associated protein protein-coding 7.693 2.916 nan 5.512 4.560 2.624 2.587 3.928 0.840 1.612 0.974 3.973 8.378 3.904 0.209 2.737 2.707 5.644 7.452 7.535 6.299 7.721 4.060 11.834 13.067 4.788 6.304 7.281 11.491 10.374 10.604 2.847 4.395 6.586 6.821 5.008 4.618 3.802 1.750 4.841 5.100 1.276 2.524 2.587 3.973 1.137 2.538 1.575 1.394 2181 chr6 135553615 135582319 + 0 NA Intergenic MER41A|LTR|ERV1 7669 NR_030317 693126 NR_030317 ENSG00000207689 MIR548A2 MIRN548A2 microRNA 548a-2 ncRNA 0.910 0.911 1.136 0.447 0.671 0.385 0.179 0.067 0.061 0.148 0.067 0.330 0.490 0.042 0.124 2.190 1.992 2.773 2.822 0.459 0.560 nan 0.821 2.155 2.270 0.232 0.342 0.556 0.608 0.602 0.442 15.503 19.841 0.196 0.274 0.414 nan 0.497 0.415 0.092 0.099 0.030 0.066 0.179 0.330 0.077 0.089 13.429 0.168 300 chr1 226294995 226301506 + 0 NA Intergenic CpG 47822 NR_002315 440926 Hs.533624 NR_002315 H3F3AP4 p13 H3 histone, family 3A, pseudogene 4 pseudo 4.887 nan 14.163 4.473 3.557 1.918 2.122 1.127 0.322 3.581 1.587 3.295 4.169 1.599 0.091 1.438 2.323 3.292 5.278 6.928 nan 5.294 1.755 5.393 5.011 2.006 2.504 6.083 9.635 3.130 3.722 0.674 1.162 2.479 1.744 3.520 6.002 1.816 1.193 2.597 0.914 0.568 0.366 2.122 3.295 0.238 2.981 0.501 1.864 253 chr1 183482299 183489901 + 0 NA intron (NM_001331007, intron 4 of 23) intron (NM_001331007, intron 4 of 23) 44594 NM_001174061 9887 Hs.591463 NM_014837 ENSG00000116698 SMG7 C1orf16|EST1C|SGA56M SMG7, nonsense mediated mRNA decay factor protein-coding nan nan 1.218 0.103 0.508 0.359 0.294 0.400 0.275 0.535 0.342 0.206 0.372 0.115 0.117 0.507 0.604 3.580 2.548 0.492 nan 1.080 0.340 nan 0.661 0.794 1.214 0.648 0.417 0.405 0.217 1.963 3.491 3.645 7.633 0.433 nan 0.779 0.623 0.066 0.129 1.226 0.084 0.294 0.206 0.254 4.561 0.081 1611 chr20 35916369 35926225 + 0 NA intron (NM_001003897, intron 1 of 2) L1MC3|LINE|L1 3246 NM_001003897 63905 Hs.6126 NM_022077 ENSG00000101363 MANBAL - mannosidase beta like protein-coding 2.729 4.073 2.144 4.186 2.100 1.021 2.471 1.130 0.395 1.154 0.656 3.377 4.720 1.510 0.132 3.226 3.161 1.511 2.959 3.474 nan 7.956 2.720 3.953 4.290 2.209 3.242 4.972 6.608 3.058 3.155 1.572 2.196 1.892 2.315 2.264 nan 1.995 1.142 0.959 1.562 0.217 0.917 2.471 3.377 0.786 1.172 0.583 0.703 2155 chr6 76768024 76774679 + 0 NA intron (NM_001563, intron 1 of 16) intron (NM_001563, intron 1 of 16) 11044 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding nan nan 0.920 0.104 0.136 0.072 0.197 0.142 0.101 0.137 0.036 0.233 0.096 0.113 0.645 0.466 7.957 1.801 0.245 0.195 0.508 0.284 0.303 0.239 0.043 0.151 0.134 0.142 0.315 0.059 0.343 0.425 0.132 0.172 0.268 0.435 0.218 0.320 0.025 0.080 0.029 0.108 0.197 0.036 0.073 0.015 0.476 0.187 451 chr11 61558464 61563764 + 0 NA intron (NM_004111, intron 1 of 1) (TTAA)n|Simple_repeat|Simple_repeat 1005 NM_004111 2237 Hs.409065 NM_004111 ENSG00000168496 FEN1 FEN-1|MF1|RAD2 flap structure-specific endonuclease 1 protein-coding nan 5.377 3.535 8.158 6.720 3.968 5.699 3.129 0.334 2.913 1.582 5.918 12.828 4.374 0.169 13.234 9.110 10.675 14.745 17.051 17.370 10.845 8.519 17.507 19.792 8.650 10.137 10.069 16.054 10.204 10.040 9.321 13.059 8.780 13.955 8.010 7.198 4.110 2.134 5.663 4.098 2.301 2.053 5.699 5.918 1.839 3.050 2.523 2.052 2502 chr9 35095440 35115578 + 0 NA intron (NR_134455, intron 9 of 9) FLAM_C|SINE|Alu -2317 NM_001287031 30968 Hs.3439 NM_013442 ENSG00000165283 STOML2 HSPC108|SLP-2 stomatin like 2 protein-coding 2.033 nan 1.414 1.160 1.492 0.671 2.624 0.873 0.137 0.743 0.438 1.183 4.142 1.104 0.075 1.049 1.152 1.761 2.643 2.514 2.527 3.860 2.525 1.686 1.787 1.965 2.869 1.773 2.896 2.365 2.331 1.388 1.611 2.213 1.901 1.887 1.850 2.373 1.642 1.049 1.001 0.325 0.567 2.624 1.183 0.204 0.638 0.445 0.430 2366 chr8 59716345 59725236 + 0 NA exon (NM_014729, exon 8 of 9) exon (NM_014729, exon 8 of 9) -148386 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 2.073 nan 2.852 1.302 1.841 1.136 1.571 0.234 0.037 0.811 0.441 6.100 2.333 0.305 0.157 0.390 0.526 0.258 0.611 9.776 11.186 2.120 0.839 0.052 0.093 2.332 nan 2.211 2.176 1.178 0.843 0.099 0.178 2.569 3.530 0.191 0.263 4.593 1.713 1.967 1.758 0.694 1.793 1.571 6.100 0.099 1.120 0.023 0.029 1969 chr5 50328642 50357255 + 0 NA Intergenic Intergenic -76927 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA nan nan 0.659 0.271 0.287 0.184 0.375 0.056 0.061 0.093 0.104 0.112 0.609 0.057 0.114 0.175 0.098 0.733 1.987 0.304 0.458 nan 0.467 0.061 0.083 0.747 0.798 0.356 0.302 nan 1.552 0.058 0.141 6.127 7.594 0.108 0.168 0.450 0.370 0.244 0.115 2.138 0.066 0.375 0.112 0.417 0.092 0.024 0.069 1594 chr20 23329811 23347600 + 0 NA promoter-TSS (NR_109884) promoter-TSS (NR_109884) 59 NR_109884 100505683 Hs.140295 NR_109884 ENSG00000232645 LINC01431 - long intergenic non-protein coding RNA 1431 ncRNA 3.638 3.803 nan 3.828 2.044 1.134 2.131 2.601 0.271 1.258 0.581 2.254 5.334 1.644 0.090 4.157 4.289 2.590 4.321 3.847 2.840 5.402 2.294 5.281 5.216 2.287 2.879 5.295 7.525 4.676 5.272 2.029 3.659 3.645 3.955 3.112 3.592 2.279 1.434 1.560 1.543 0.504 0.625 2.131 2.254 0.974 2.278 1.522 1.058 2252 chr7 30925129 30962040 + 0 NA Intergenic Intergenic -7725 NM_001329872 358 Hs.76152 NM_000385 ENSG00000240583 AQP1 AQP-CHIP|CHIP28|CO aquaporin 1 (Colton blood group) protein-coding 1.656 0.858 2.268 0.224 0.258 0.161 0.370 0.126 0.070 0.103 0.117 0.813 3.544 0.080 0.126 0.858 1.345 0.603 2.801 0.553 nan 0.538 0.195 0.829 0.910 0.491 nan nan nan 0.538 0.594 0.545 0.679 0.200 0.339 0.541 nan 0.489 0.500 1.249 0.195 0.046 0.106 0.370 0.813 0.289 0.081 0.217 0.357 674 chr12 122062035 122074664 + 0 NA intron (NM_032790, intron 1 of 1) AluSq|SINE|Alu 3894 NM_032790 84876 Hs.55148 NM_032790 ORAI1 CRACM1|IMD9|ORAT1|TAM2|TMEM142A ORAI calcium release-activated calcium modulator 1 protein-coding 1.854 3.022 1.833 3.627 0.782 0.363 1.502 0.567 0.242 0.685 0.476 0.809 6.816 1.267 0.128 1.209 1.353 1.538 2.456 1.376 1.349 nan 1.575 1.668 1.674 1.112 1.692 5.428 8.130 1.821 1.434 0.916 1.166 2.852 3.414 1.908 4.507 3.900 1.760 2.814 6.516 0.898 0.419 1.502 0.809 0.455 1.640 0.455 1.104 534 chr11 127314353 127333415 + 0 NA Intergenic Intergenic 182919 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LOC101929497 - uncharacterized LOC101929497 ncRNA 0.531 0.705 1.023 0.281 3.309 1.683 0.500 0.020 0.033 0.230 0.250 0.960 1.021 0.045 0.118 0.571 0.658 0.194 0.244 0.988 1.085 4.819 1.364 0.168 0.164 1.062 1.540 1.414 1.557 0.420 0.249 0.442 0.537 2.338 1.812 0.175 nan 1.444 0.849 0.079 0.168 0.737 0.282 0.500 0.960 0.059 0.027 0.104 0.129 794 chr14 57188317 57289452 + 0 NA Intergenic Intergenic 33497 NR_073036 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding nan nan 3.068 0.339 0.591 0.321 0.473 0.090 0.093 0.126 0.147 0.308 0.285 0.049 0.112 0.287 0.232 2.400 2.100 0.462 0.542 0.837 0.320 0.421 0.436 0.137 0.208 0.689 0.608 7.227 6.767 0.229 0.332 0.906 1.283 7.893 15.311 nan 0.630 0.035 0.164 0.367 0.134 0.473 0.308 0.158 0.041 0.114 6.323 1163 chr18 29670088 29675175 + 0 NA promoter-TSS (NM_001191324) promoter-TSS (NM_001191324) 62 NM_198128 51444 Hs.302408 NM_016271 ENSG00000134758 RNF138 HSD-4|NARF|STRIN|hNARF ring finger protein 138 protein-coding 4.801 4.347 5.627 5.945 5.927 2.868 9.767 1.760 0.348 2.773 0.991 5.195 10.216 2.114 0.103 7.621 7.029 6.918 nan 12.958 10.861 13.558 9.770 8.814 9.482 2.704 3.714 11.626 16.469 7.465 8.308 1.994 4.028 10.279 9.302 7.298 6.011 6.780 4.267 3.871 4.331 2.068 4.304 9.767 5.195 1.601 3.106 1.122 2.050 222 chr1 160323612 160346889 + 0 NA Intergenic Intergenic -1611 NM_005598 4807 Hs.30956 NM_005598 ENSG00000171786 NHLH1 HEN1|NSCL|NSCL1|bHLHa35 nescient helix-loop-helix 1 protein-coding 3.956 nan 8.914 0.106 0.528 0.173 0.655 0.171 0.091 0.108 0.156 0.405 0.380 0.168 0.098 1.706 3.984 0.620 0.717 1.565 nan 0.638 0.264 0.241 0.258 2.821 3.708 0.413 nan 6.234 7.185 0.916 1.348 2.149 1.929 4.557 12.770 0.683 0.497 0.601 0.410 0.682 3.977 0.655 0.405 1.422 0.039 0.542 4.137 2162 chr6 108877956 108884639 + 0 NA promoter-TSS (NM_001455) promoter-TSS (NM_001455) 271 NM_201559 2309 Hs.220950 NM_001455 ENSG00000118689 FOXO3 AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A forkhead box O3 protein-coding 7.744 nan nan 8.702 5.332 2.542 5.678 3.445 0.364 1.274 0.601 4.429 9.838 4.125 0.181 8.757 9.811 6.262 8.416 7.141 nan 5.715 4.803 15.358 14.811 2.808 3.779 3.417 6.936 nan 8.781 3.791 7.197 7.166 6.950 6.711 6.854 1.892 0.983 2.431 7.299 2.757 3.836 5.678 4.429 1.416 3.645 3.326 3.445 372 chr10 112025595 112038166 + 0 NA intron (NM_005962, intron 3 of 5) intron (NM_005962, intron 3 of 5) 32827 NM_005871 10285 Hs.632093 NM_005871 ENSG00000119953 SMNDC1 SMNR|SPF30|TDRD16C survival motor neuron domain containing 1 protein-coding 1.351 nan 1.134 0.077 0.480 0.192 0.147 0.464 0.063 0.025 0.078 0.154 0.311 0.082 0.094 0.363 0.329 0.614 1.085 0.150 0.181 0.465 0.162 0.184 0.127 3.886 4.199 0.437 0.501 2.013 1.307 0.182 0.221 0.759 0.583 0.753 2.172 0.311 0.294 0.331 0.314 0.243 0.138 0.147 0.154 0.694 0.073 0.100 0.680 60 chr1 27012315 27033755 + 0 NA exon (NM_006015, exon 1 of 20) exon (NM_006015, exon 1 of 20) 513 NM_139135 8289 Hs.468972 NM_006015 ENSG00000117713 ARID1A B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1 AT-rich interaction domain 1A protein-coding 4.901 2.925 nan 5.119 3.381 1.845 2.943 1.867 0.174 1.334 0.605 1.808 6.220 5.596 0.183 3.588 3.670 3.916 5.437 7.542 6.641 3.701 1.413 9.529 9.819 4.246 5.541 4.273 6.271 4.566 5.172 3.061 5.470 2.805 2.700 4.868 5.952 2.047 1.175 3.189 3.723 0.609 2.076 2.943 1.808 1.152 1.368 2.825 2.155 2373 chr8 61669501 61724337 + 0 NA intron (NM_017780, intron 3 of 37) intron (NM_017780, intron 3 of 37) 43101 NM_001316690 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 1.846 1.327 1.742 1.815 3.045 1.640 1.615 0.078 0.071 1.019 0.603 5.242 1.824 0.075 0.077 0.352 0.338 0.573 0.513 3.286 4.199 4.038 1.826 0.153 0.122 1.095 nan 2.535 2.555 nan 1.448 0.344 0.569 2.094 4.327 1.124 3.349 2.718 1.372 0.635 1.978 0.610 0.625 1.615 5.242 3.955 1.388 0.233 1.011 105 chr1 43810993 43837295 + 0 NA promoter-TSS (NM_001255) promoter-TSS (NM_001255) -482 NM_001255 991 Hs.524947 NM_001255 ENSG00000117399 CDC20 CDC20A|bA276H19.3|p55CDC cell division cycle 20 protein-coding nan 1.745 nan 1.671 1.723 0.926 1.268 1.019 0.282 1.263 0.735 3.018 4.145 1.886 0.122 1.807 2.513 2.197 2.951 4.444 4.050 2.450 0.937 2.957 3.135 1.734 nan nan 11.154 1.608 1.400 1.890 nan 0.986 0.898 1.689 3.115 1.661 0.849 1.940 1.434 0.249 0.669 1.268 3.018 0.517 1.095 1.315 0.936 1409 chr2 16197038 16214832 + 0 NA intron (NR_126559, intron 1 of 3) AluSx3|SINE|Alu 15386 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 (non-protein coding) ncRNA 0.770 0.410 2.843 0.393 0.217 0.095 0.123 0.047 0.036 0.062 0.116 0.040 0.371 0.059 0.116 0.318 0.308 0.229 0.399 0.284 0.290 1.231 0.394 0.223 0.143 0.142 0.239 0.539 nan 0.500 0.302 6.739 9.501 0.060 0.042 0.691 nan 0.151 0.212 0.985 1.311 0.037 0.018 0.123 0.040 0.223 2.572 0.190 1230 chr18 74197939 74209857 + 0 NA intron (NR_136504, intron 1 of 1) CpG 290 NR_136504 101927989 Hs.665186 NR_136504 ENSG00000265778 LOC101927989 - uncharacterized LOC101927989 ncRNA nan nan 1.408 2.722 3.782 2.131 4.105 0.025 0.027 2.702 1.212 7.220 7.793 0.745 0.083 2.358 3.275 4.367 4.999 6.460 nan 7.781 4.023 4.319 4.142 0.100 0.230 6.357 nan 3.645 3.545 0.980 2.816 5.313 3.891 3.257 4.501 1.945 1.213 0.206 2.415 0.848 2.291 4.105 7.220 0.861 2.209 1.682 1.889 1411 chr2 16251359 16263381 + 0 NA Intergenic Intergenic 66821 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 (non-protein coding) ncRNA 0.689 0.504 0.747 0.483 0.167 0.120 0.075 0.094 0.040 0.052 0.104 0.047 0.333 0.036 0.075 0.367 0.405 0.268 0.265 0.336 0.374 0.245 0.081 0.215 0.179 0.105 0.250 0.285 nan 0.550 0.224 12.533 17.690 0.032 0.052 0.399 nan 0.188 0.331 0.092 0.214 0.008 0.020 0.075 0.047 0.016 0.059 19.649 0.113 738 chr13 108866091 108880403 + 0 NA intron (NM_032859, intron 1 of 1) intron (NM_032859, intron 1 of 1) 2484 NM_032859 84945 Hs.183528 NM_032859 ENSG00000139826 ABHD13 BEM46L1|C13orf6|bA153I24.2 abhydrolase domain containing 13 protein-coding 1.681 1.907 1.616 1.499 1.450 0.937 2.026 0.738 0.134 0.659 0.358 2.265 3.593 0.787 0.094 3.588 3.719 1.920 2.620 3.676 3.269 5.640 4.225 2.099 2.067 0.546 nan 2.869 3.969 2.403 2.216 1.301 2.267 2.131 1.932 2.551 nan 0.688 0.458 1.284 2.306 0.327 1.395 2.026 2.265 0.264 1.966 0.505 1.065 2341 chr8 20358965 20374808 + 0 NA Intergenic Intergenic 233602 NR_047509 100874051 Hs.385799 NR_047509 ENSG00000253733 LZTS1-AS1 - LZTS1 antisense RNA 1 ncRNA nan 0.649 nan 0.027 0.249 0.224 0.176 0.033 0.102 0.099 0.072 0.024 0.110 0.045 0.108 0.591 0.640 0.127 0.169 nan 0.483 nan 0.316 0.096 0.122 0.194 0.322 0.220 0.231 0.450 0.186 0.150 0.176 0.170 0.246 0.354 0.530 nan nan 0.063 0.051 0.030 0.035 0.176 0.024 0.043 0.032 0.025 0.206 2485 chr9 14298110 14331639 + 0 NA promoter-TSS (NM_005596) promoter-TSS (NM_005596) -829 NM_005596 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding nan nan 5.901 4.464 1.973 1.076 2.518 2.117 0.234 3.687 2.383 3.727 14.785 1.943 0.092 0.750 0.672 3.838 6.703 5.985 4.854 5.147 1.999 1.291 1.337 40.415 42.092 3.055 4.316 0.840 0.840 0.718 1.423 5.639 4.232 3.465 3.817 5.041 2.623 6.944 0.900 1.247 0.931 2.518 3.727 0.396 1.384 0.260 0.755 672 chr12 120965961 120974095 + 0 NA Intergenic AluSx3|SINE|Alu -2104 NM_014868 9921 Hs.442798 NM_014868 ENSG00000022840 RNF10 RIE2 ring finger protein 10 protein-coding 3.683 2.874 2.664 3.309 2.618 1.392 1.909 1.806 0.550 1.771 1.231 3.938 6.399 3.424 0.148 3.999 3.958 4.044 6.583 5.967 5.483 nan 3.432 11.791 12.220 3.141 3.726 6.286 9.215 5.888 4.858 2.956 4.692 6.199 7.682 3.324 3.577 3.623 1.991 3.552 4.733 1.122 1.053 1.909 3.938 1.017 2.199 1.513 1.280 1968 chr5 50254241 50271060 + 0 NA Intergenic Intergenic 3371 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA nan nan 0.759 0.447 4.016 2.143 5.111 0.106 0.067 2.651 1.317 4.047 13.927 0.543 0.149 0.142 0.102 10.509 9.054 11.404 10.821 nan 1.480 0.083 0.096 0.174 0.330 0.294 0.497 nan 4.917 0.080 0.104 12.288 11.685 0.201 0.299 3.204 1.836 7.393 0.579 3.977 1.103 5.111 4.047 0.184 0.097 0.028 0.132 439 chr11 45937731 45957264 + 0 NA intron (NM_152312, intron 6 of 13) intron (NM_152312, intron 6 of 13) 3270 NM_001300721 120071 Hs.86543 NM_152312 ENSG00000165905 LARGE2 GYLTL1B|PP5656 LARGE xylosyl- and glucuronyltransferase 2 protein-coding nan 2.000 1.631 2.417 1.446 0.648 0.964 0.325 0.082 1.569 1.028 1.859 2.897 0.631 0.096 3.599 4.019 1.604 2.235 4.455 3.875 5.135 1.403 2.055 2.040 0.992 1.294 1.624 1.924 1.366 1.216 1.632 2.527 1.179 1.154 1.257 nan 2.115 1.181 1.472 2.363 0.209 0.583 0.964 1.859 0.423 1.406 0.930 0.353 1748 chr22 50741622 50766384 + 0 NA intron (NM_001001794, intron 9 of 19) (CA)n|Simple_repeat|Simple_repeat -8002 NM_012401 23654 Hs.3989 NM_012401 ENSG00000196576 PLXNB2 MM1|Nbla00445|PLEXB2|dJ402G11.3 plexin B2 protein-coding 1.979 1.477 nan 0.776 1.574 0.901 2.447 0.852 0.190 0.379 0.250 2.046 2.116 1.836 0.086 1.109 1.916 1.455 2.902 2.072 1.948 1.490 0.603 1.489 1.565 1.301 2.075 3.490 4.682 1.944 1.894 0.711 1.226 1.397 1.579 0.746 0.777 1.452 0.897 1.164 0.520 0.476 0.436 2.447 2.046 0.445 2.636 0.454 0.163 2136 chr6 44621300 44643576 + 0 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -112820 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 1.087 0.879 0.957 0.068 0.281 0.108 0.752 1.354 0.105 0.084 0.133 0.096 0.407 0.098 0.115 0.477 0.445 1.730 7.940 0.329 0.416 0.162 0.077 0.368 0.378 0.165 0.288 0.531 nan 0.419 0.235 0.348 0.532 0.125 0.139 0.784 1.862 0.641 0.462 0.375 0.104 0.034 0.057 0.752 0.096 0.040 0.222 0.097 0.928 985 chr16 75974158 75985425 + 0 NA Intergenic Intergenic 298156 NR_144545 54386 Hs.301419 NM_018975 ENSG00000166848 TERF2IP DRIP5|RAP1 TERF2 interacting protein protein-coding 0.517 0.498 nan 0.110 0.440 0.227 0.918 0.054 0.129 0.152 0.155 0.131 0.217 0.038 0.069 1.046 0.848 0.069 0.085 0.386 0.491 8.107 4.113 0.453 0.436 0.125 0.174 0.389 0.378 0.536 0.349 0.332 0.672 0.070 0.044 0.104 0.162 0.877 0.751 0.020 0.112 0.009 0.064 0.918 0.131 0.165 0.009 0.341 0.055 2577 chr9 139734162 139745506 + 0 NA exon (NM_001080482, exon 1 of 1) exon (NM_001080482, exon 1 of 1) 967 NM_001080482 389813 Hs.495485 NM_001080482 ENSG00000232434 C9orf172 - chromosome 9 open reading frame 172 protein-coding nan 2.435 3.263 4.264 2.311 1.159 2.515 1.397 0.395 1.224 0.703 1.783 8.028 2.037 0.075 1.013 2.576 1.799 2.516 4.280 4.204 nan 0.912 1.502 1.447 1.259 2.016 5.040 5.495 2.468 3.316 0.881 1.168 2.322 1.960 1.431 2.877 1.740 0.838 2.965 2.952 0.695 1.401 2.515 1.783 1.132 3.353 0.721 1.049 1085 chr17 46017364 46039572 + 0 NA TTS (NM_024320) TTS (NM_024320) 6775 NM_024320 79170 Hs.368260 NM_024320 ENSG00000167183 PRR15L ATAD4 proline rich 15 like protein-coding 1.313 2.672 nan 1.973 3.026 1.574 0.785 0.324 0.119 2.065 1.282 3.669 5.393 0.318 0.106 1.556 2.331 0.892 1.465 3.095 nan 4.436 1.282 3.266 3.598 0.906 1.439 7.930 nan 1.167 0.862 1.696 3.230 4.917 4.657 0.818 1.456 2.857 1.381 3.548 4.121 2.113 2.293 0.785 3.669 0.463 0.586 2.452 0.416 1860 chr3 181324158 181369386 + 0 NA intron (NR_075090, intron 2 of 2) MIRb|SINE|MIR 18650 NR_075090 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 0.828 1.159 0.657 0.210 0.607 0.259 0.195 0.114 0.175 0.388 0.323 0.166 0.468 3.340 0.128 0.262 0.193 0.152 0.296 0.521 0.632 3.298 1.543 0.169 0.132 0.198 0.378 0.526 0.577 0.778 0.336 0.100 0.152 0.196 0.222 0.146 0.249 0.656 0.575 0.027 0.102 0.033 0.244 0.195 0.166 0.013 0.016 0.044 0.070 1849 chr3 177156858 177172097 + 0 NA intron (NR_047568, intron 1 of 3) intron (NR_047568, intron 1 of 3) 4768 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 1.296 2.682 1.481 0.174 0.827 0.437 0.494 1.942 0.380 0.226 0.247 0.353 0.717 0.171 0.149 0.345 0.184 1.520 5.964 0.470 0.444 1.146 0.439 0.216 0.270 0.968 1.363 0.586 0.534 0.801 0.361 0.124 0.156 0.265 0.398 0.363 0.866 0.780 0.667 0.123 0.114 0.050 0.407 0.494 0.353 0.077 0.087 0.085 0.322 346 chr10 14994222 15003839 + 0 NA Intergenic AluSz6|SINE|Alu -2408 NM_001080836 644890 Hs.257249 NM_001080836 ENSG00000197889 MEIG1 SPATA39|bA2K17.3 meiosis/spermiogenesis associated 1 protein-coding nan 2.859 3.090 4.639 4.574 2.586 1.183 3.400 0.889 1.191 0.755 3.765 6.772 2.878 0.114 5.075 5.837 3.636 5.606 5.196 3.809 11.902 5.014 5.322 5.802 2.803 3.213 5.735 8.928 2.520 2.559 1.328 2.358 3.017 2.812 2.955 3.135 2.180 1.103 1.794 2.169 0.384 1.340 1.183 3.765 0.425 1.629 1.011 1.041 2461 chr8 146027442 146057125 + 0 NA Intergenic L1MA4|LINE|L1 -10620 NM_001282797 7553 Hs.493218 NM_003416 ENSG00000147789 ZNF7 HF.16|KOX4|zf30 zinc finger protein 7 protein-coding 1.863 0.859 nan 2.516 1.405 0.821 0.961 0.478 0.191 0.566 0.355 14.417 2.574 0.383 0.104 1.087 1.575 0.831 1.371 nan 10.317 nan 0.846 2.965 3.131 0.630 1.070 1.842 2.467 0.823 0.738 1.301 1.891 1.097 0.923 0.759 0.944 1.908 0.993 0.931 1.968 0.236 0.808 0.961 14.417 0.240 1.160 0.599 0.304 2237 chr7 20253670 20267764 + 0 NA intron (NR_134569, intron 3 of 3) intron (NR_134569, intron 3 of 3) 3517 NR_134569 100506098 Hs.59203 NR_134567 ENSG00000233834 LOC100506098 - uncharacterized LOC100506098 ncRNA 0.977 1.654 1.201 1.930 0.795 0.497 0.227 0.122 0.126 0.722 0.361 0.970 1.713 0.032 0.176 2.896 2.632 5.699 nan 0.635 0.642 6.873 4.057 1.381 1.372 0.458 0.679 8.119 9.881 0.370 0.157 1.950 2.241 2.889 3.055 0.286 nan 1.284 0.908 2.002 0.152 0.521 0.056 0.227 0.970 0.034 0.891 0.828 0.036 1744 chr22 47157451 47172381 + 0 NA intron (NR_104292, intron 2 of 13) AluSx1|SINE|Alu -4908 NM_001284305 25771 Hs.435044 NM_014346 ENSG00000054611 TBC1D22A C22orf4|HSC79E021 TBC1 domain family member 22A protein-coding 1.571 0.880 nan 0.805 1.441 0.601 1.176 0.581 0.110 0.759 0.438 1.088 2.733 0.853 0.124 2.801 2.692 1.649 2.655 1.875 1.776 2.394 0.734 3.007 3.126 1.134 1.650 3.363 3.654 2.413 3.046 1.403 1.916 1.216 1.372 1.044 1.252 1.614 0.921 1.561 0.978 0.293 0.576 1.176 1.088 0.583 2.161 0.791 0.389 1630 chr20 50469312 50538010 + 0 NA Intergenic MER20|DNA|hAT-Charlie -24209 NR_110016 101927678 Hs.683840 NR_110016 ENSG00000227964 LINC01429 - long intergenic non-protein coding RNA 1429 ncRNA 0.761 0.941 0.562 0.095 0.259 0.147 0.132 0.171 0.205 0.096 0.101 0.153 0.378 4.761 0.307 0.622 nan 0.251 0.442 0.243 0.284 0.748 0.220 0.316 0.338 0.281 0.484 0.248 0.348 0.442 0.228 0.253 0.314 0.140 0.182 0.235 0.575 0.314 0.434 0.035 0.078 0.028 0.097 0.132 0.153 0.043 0.067 0.050 0.070 1811 chr3 133378651 133383420 + 0 NA promoter-TSS (NM_007027) promoter-TSS (NM_007027) -298 NM_007027 11073 Hs.593379 NM_007027 ENSG00000163781 TOPBP1 TOP2BP1 topoisomerase (DNA) II binding protein 1 protein-coding 5.493 nan nan 4.092 6.336 3.508 3.834 2.930 0.306 4.553 2.504 4.063 5.539 1.364 0.103 4.716 3.644 4.746 6.121 10.996 10.569 13.467 8.745 14.923 15.518 5.720 7.706 5.499 7.924 nan 8.122 3.862 5.848 3.318 4.712 3.545 4.096 4.188 2.705 3.586 2.979 0.581 2.507 3.834 4.063 1.160 1.937 1.454 0.954 275 chr1 203763953 203766241 + 0 NA intron (NM_001319238, intron 1 of 19) CpG 432 NM_014827 9877 Hs.532399 NM_014827 ENSG00000058673 ZC3H11A ZC3HDC11A zinc finger CCCH-type containing 11A protein-coding 7.057 4.341 9.080 4.657 6.699 4.413 5.391 7.100 0.268 4.318 1.617 6.139 11.990 6.841 0.223 6.529 6.712 19.713 22.781 9.872 9.762 7.122 4.505 nan 30.035 6.226 6.911 9.618 15.406 7.300 5.955 2.599 4.511 7.323 8.113 8.005 8.290 3.089 1.738 3.387 5.444 1.167 2.966 5.391 6.139 1.460 3.948 1.074 2.494 2001 chr5 90672933 90682794 + 0 NA intron (NR_027435, intron 1 of 2) intron (NR_027435, intron 1 of 2) 1327 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding nan 8.856 4.448 4.805 11.158 5.673 3.953 2.297 0.293 2.133 1.113 15.910 4.883 0.155 6.022 7.626 8.963 11.938 13.573 8.053 7.777 3.779 10.012 10.045 7.142 7.810 7.432 15.276 14.883 20.169 3.286 6.092 14.879 12.489 10.213 nan 2.751 1.558 3.599 6.297 2.302 2.832 3.953 0.749 2.787 3.294 2.605 1034 chr17 27068963 27075042 + 0 NA intron (NM_004295, intron 1 of 6) intron (NM_004295, intron 1 of 6) 979 NM_004295 9618 Hs.8375 NM_004295 ENSG00000076604 TRAF4 CART1|MLN62|RNF83 TNF receptor associated factor 4 protein-coding nan nan 8.283 2.204 5.754 3.035 3.329 2.274 0.531 1.534 0.617 4.172 11.697 6.147 0.132 4.132 6.289 6.089 10.302 6.411 5.182 5.969 1.664 7.805 7.657 2.442 3.383 12.043 12.971 5.909 5.772 2.423 5.028 4.448 3.879 3.614 nan 2.429 1.421 5.547 4.630 1.201 1.977 3.329 4.172 1.880 3.051 3.147 2.827 1556 chr2 240142148 240188190 + 0 NA intron (NM_006037, intron 2 of 26) intron (NM_006037, intron 2 of 26) -48016 NR_026664 85009 Hs.744565 NM_032923 MGC16025 - uncharacterized LOC85009 ncRNA 0.917 nan 1.318 0.651 0.798 0.432 0.380 0.055 0.052 0.422 0.213 0.845 3.035 0.113 0.105 1.159 1.476 0.680 0.966 1.100 0.971 0.847 0.250 0.757 0.807 0.636 0.908 3.486 3.637 0.363 0.264 0.882 1.050 0.170 0.267 0.150 0.249 0.930 0.609 5.352 3.393 0.033 0.062 0.380 0.845 0.137 1.770 0.293 0.051 219 chr1 159194870 159203901 + 0 NA Intergenic Intergenic 24336 NM_001122951 2532 Hs.153381 NM_002036 ENSG00000213088 ACKR1 CCBP1|CD234|DARC|DARC/ACKR1|Dfy|FY|GPD|GpFy|WBCQ1 atypical chemokine receptor 1 (Duffy blood group) protein-coding nan nan 1.975 0.069 0.259 0.125 0.084 0.098 0.073 0.053 0.297 0.071 0.278 0.085 0.127 1.256 0.998 13.499 9.451 0.242 nan 0.118 0.073 0.112 0.117 0.224 0.414 0.339 0.331 0.397 0.300 3.290 5.372 0.066 0.113 0.187 0.512 0.432 0.456 0.771 0.135 0.011 0.053 0.084 0.071 0.011 0.022 3.394 0.149 2380 chr8 74204597 74209422 + 0 NA 5' UTR (NM_172037, exon 1 of 6) 5' UTR (NM_172037, exon 1 of 6) 172 NM_172037 157506 Hs.244940 NM_172037 ENSG00000121039 RDH10 SDR16C4 retinol dehydrogenase 10 protein-coding 7.693 3.814 7.441 5.205 7.523 3.941 3.553 3.914 0.266 1.812 1.232 7.491 10.965 6.657 0.191 4.815 5.565 7.827 11.906 9.575 8.321 9.544 5.104 15.702 15.495 3.659 5.684 6.179 9.010 7.839 8.791 5.527 9.847 7.306 7.588 7.149 6.964 6.059 3.025 2.284 4.303 1.475 3.653 3.553 7.491 0.585 5.693 2.124 1.967 1127 chr17 77766711 77789995 + 0 NA Intergenic CpG-11232 -7438 NM_020649 57332 Hs.387258 NM_020649 ENSG00000141570 CBX8 PC3|RC1 chromobox 8 protein-coding 2.266 2.431 4.390 4.294 3.931 1.938 5.275 0.500 0.151 1.737 0.914 3.832 7.272 2.802 0.135 2.972 3.566 1.683 2.499 4.980 4.394 3.901 1.804 3.036 3.120 nan 2.874 4.207 5.966 3.013 2.163 1.686 2.768 2.414 1.832 1.272 2.219 nan 1.054 3.336 2.676 0.616 0.930 5.275 3.832 1.647 3.867 0.732 0.630 269 chr1 203140759 203157030 + 0 NA exon (NM_001276, exon 9 of 10) exon (NM_001276, exon 9 of 10) -3952 NM_004997 4608 Hs.927 NM_004997 ENSG00000133055 MYBPH - myosin binding protein H protein-coding 1.524 1.017 1.448 0.152 1.952 0.874 0.269 0.121 0.110 0.463 0.156 2.777 0.554 0.053 0.076 0.648 0.872 0.506 0.704 1.563 2.346 1.449 0.408 nan nan 0.353 0.612 0.743 0.728 0.524 0.304 0.214 0.282 0.134 0.199 1.574 5.327 1.069 0.623 0.232 0.324 0.024 0.419 0.269 2.777 0.142 0.354 0.012 0.676 110 chr1 46148134 46155592 + 0 NA intron (NM_021639, intron 1 of 12) CpG 439 NM_021639 60313 Hs.238432 NM_021639 ENSG00000159592 GPBP1L1 SP192 GC-rich promoter binding protein 1 like 1 protein-coding nan 2.874 nan 5.469 4.714 2.308 2.586 3.740 0.470 3.456 1.636 2.124 12.159 4.169 0.131 5.335 4.973 6.102 9.463 9.080 7.913 5.736 2.484 19.002 20.792 5.154 nan nan 14.665 4.797 5.153 5.711 nan 3.172 4.451 5.962 7.612 3.526 1.739 4.190 4.496 0.664 2.426 2.586 2.124 1.442 2.095 4.566 2.308 702 chr13 34115170 34122344 + 0 NA intron (NM_001243476, intron 3 of 17) intron (NM_001243476, intron 3 of 17) 132215 NM_001243476 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 2.814 2.901 2.388 3.191 3.002 1.632 1.495 2.142 0.228 1.938 1.069 5.355 6.154 1.492 0.143 8.490 8.657 5.124 4.214 9.710 10.755 8.479 6.528 5.423 5.355 5.034 5.224 7.200 10.828 5.081 4.739 4.316 7.629 3.459 4.325 7.165 7.361 2.370 1.129 4.616 2.494 0.712 1.802 1.495 5.355 0.391 2.293 3.931 1.543 2417 chr8 119906899 119912638 + 0 NA Intergenic Intergenic 54615 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding nan nan 1.604 0.325 0.328 0.328 0.068 0.176 0.028 0.273 0.212 0.113 0.772 0.094 0.218 0.215 0.311 0.422 0.427 0.575 nan 1.821 0.720 nan 0.578 nan 0.583 0.375 0.409 0.209 0.166 0.346 1.378 3.840 0.281 0.733 1.265 0.642 0.010 0.124 0.545 0.013 0.068 0.113 4.492 0.087 0.086 1961 chr5 34912840 34918249 + 0 NA promoter-TSS (NM_018321) promoter-TSS (NM_018321) 187 NR_026591 5810 Hs.38114 NM_002853 ENSG00000113456 RAD1 HRAD1|REC1 RAD1 checkpoint DNA exonuclease protein-coding 3.372 3.610 6.060 9.244 3.272 1.273 2.720 4.511 0.576 2.889 1.921 4.585 7.117 2.948 0.158 5.111 4.480 5.279 7.631 5.727 5.271 5.225 2.148 8.198 8.800 7.980 9.827 7.336 9.252 8.227 8.712 4.859 8.818 4.077 4.714 3.617 3.807 4.156 2.253 1.004 1.639 0.477 0.938 2.720 4.585 1.275 3.223 2.222 1.156 1930 chr4 189896281 189918572 + 0 NA Intergenic Intergenic 530694 NR_033869 401164 Hs.435756 NR_033869 ENSG00000249378 LINC01060 - long intergenic non-protein coding RNA 1060 ncRNA nan 1.199 nan 0.669 0.730 0.415 0.385 0.066 0.131 0.162 0.158 1.966 0.513 0.047 0.089 0.302 0.214 0.451 0.932 0.747 0.857 4.976 1.672 0.220 0.267 0.086 0.123 1.379 1.332 0.342 0.202 0.217 0.243 0.955 0.909 0.084 0.160 0.896 0.432 0.002 0.445 0.128 0.531 0.385 1.966 0.043 1.278 0.214 0.024 881 chr15 66531371 66535773 + 0 NA intron (NM_032445, intron 1 of 22) intron (NM_032445, intron 1 of 22) 12503 NM_032445 84465 Hs.712886 NM_032445 ENSG00000157890 MEGF11 - multiple EGF like domains 11 protein-coding 0.837 0.766 nan 0.011 0.254 0.254 0.115 0.052 0.284 0.286 0.171 0.108 0.366 0.056 0.056 9.800 10.942 13.520 7.729 0.360 0.490 nan 0.200 1.094 1.301 0.415 0.676 0.236 0.337 0.641 0.367 7.750 12.335 0.168 0.169 0.213 0.433 0.577 0.369 0.040 0.071 0.115 0.108 0.177 0.139 6.464 0.028 683 chr12 125065074 125075262 + 0 NA Intergenic L1ME3A|LINE|L1 -18158 NM_001206654 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 1.027 1.324 1.086 0.353 2.040 0.851 0.551 0.168 0.095 0.661 0.471 7.928 1.672 0.042 0.072 0.425 0.380 0.253 0.290 2.981 3.910 nan 0.840 0.585 0.673 0.969 1.307 4.089 4.829 0.628 0.325 0.225 0.377 0.497 0.511 0.365 0.802 1.764 0.983 1.048 3.948 0.102 0.141 0.551 7.928 0.270 0.325 0.030 0.206 150 chr1 91485377 91489490 + 0 NA promoter-TSS (NM_016620) promoter-TSS (NM_016620) -368 NM_016620 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 7.773 nan 5.739 5.713 6.403 4.086 5.639 3.525 0.278 1.450 0.928 5.694 10.938 4.840 0.210 5.313 6.198 8.219 10.572 10.406 nan 8.188 5.390 15.819 16.276 6.660 nan 14.725 19.508 nan 5.121 5.869 8.305 3.672 3.444 10.213 9.372 3.832 2.031 5.409 3.377 0.718 4.913 5.639 5.694 1.649 2.371 1.850 3.083 2385 chr8 77751691 77758768 + 0 NA intron (NM_024721, intron 6 of 10) intron (NM_024721, intron 6 of 10) 123857 NR_130460 100422921 NR_130460 ENSG00000266712 MIR3149 - microRNA 3149 ncRNA 1.331 0.736 1.003 0.172 0.520 0.296 0.218 0.403 0.045 0.378 0.388 0.084 0.244 0.185 0.058 1.871 1.339 10.494 4.010 0.551 0.680 1.144 0.317 16.994 17.418 0.832 1.050 0.421 0.530 0.494 0.243 1.114 2.476 3.839 3.767 0.289 0.645 1.265 0.901 0.072 0.189 1.145 0.067 0.218 0.084 0.850 0.611 0.122 228 chr1 164526305 164539296 + 0 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 4203 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 - PBX homeobox 1 protein-coding 2.145 nan 2.744 3.319 2.751 1.204 2.284 1.544 0.133 1.442 1.182 1.679 7.820 0.176 0.125 1.283 2.336 2.368 3.941 5.781 nan 2.441 1.057 0.917 0.846 4.820 5.638 2.257 nan 1.910 1.709 1.091 2.206 2.580 1.991 2.687 3.851 1.826 0.877 1.092 3.606 0.602 1.075 2.284 1.679 0.060 0.829 0.953 1.724 2525 chr9 101102023 101109304 + 0 NA intron (NM_005458, intron 13 of 18) intron (NM_005458, intron 13 of 18) -87660 NM_001267571 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 1.541 0.837 1.722 0.144 0.397 0.153 0.104 0.031 0.044 0.109 0.104 0.066 0.352 0.015 0.085 0.296 0.160 0.125 0.184 0.292 0.353 0.266 0.057 0.093 0.061 0.376 0.811 0.232 nan 8.937 9.217 0.087 0.127 0.884 0.682 0.925 3.014 nan 0.546 0.015 0.037 0.209 0.139 0.104 0.066 0.399 0.014 0.055 1.678 2009 chr5 98262584 98270054 + 0 NA non-coding (NR_036530, exon 1 of 1) non-coding (NR_036530, exon 1 of 1) 1481 NR_036530 100289230 Hs.552095 NR_036530 LOC100289230 - uncharacterized LOC100289230 ncRNA nan 4.623 1.767 2.018 3.657 1.973 2.701 2.251 0.184 1.002 0.409 1.407 5.711 3.126 0.121 1.833 2.115 10.734 13.675 4.339 3.787 3.197 1.410 5.894 6.026 2.745 3.467 3.488 6.037 4.634 5.849 1.092 2.688 4.027 3.981 3.099 nan 1.486 0.902 1.215 2.768 1.050 1.149 2.701 1.407 0.350 1.905 0.649 1.469 1545 chr2 219856700 219869457 + 0 NA Intergenic L2b|LINE|L2 3352 NR_029867 494324 NR_029867 ENSG00000198973 MIR375 MIRN375|hsa-mir-375|miRNA375|mir-375 microRNA 375 ncRNA nan 2.648 nan 6.060 7.467 3.644 1.346 0.065 0.064 3.870 1.903 12.303 7.874 0.545 0.061 4.812 9.428 0.301 0.514 11.665 11.008 4.360 1.559 0.349 0.302 0.886 1.205 14.757 nan 3.961 4.135 2.304 4.864 1.937 1.270 1.461 6.595 2.463 1.161 5.708 4.406 0.575 0.675 1.346 12.303 1.795 4.995 4.506 1.286 1466 chr2 114029917 114050011 + 0 NA Intergenic Intergenic -3466 NM_003466 7849 Hs.469728 NM_003466 ENSG00000125618 PAX8 - paired box 8 protein-coding 0.791 nan 0.926 0.087 0.224 0.127 0.162 0.696 0.096 0.047 0.080 0.131 nan 0.038 0.043 0.299 0.243 4.908 10.127 0.462 nan 0.539 0.175 0.466 0.512 0.161 0.303 0.327 0.450 0.393 0.185 0.465 0.510 0.040 0.052 0.256 0.391 0.152 0.238 0.106 0.065 0.005 0.036 0.162 0.131 0.044 0.020 0.230 0.098 2092 chr6 21583993 21616701 + 0 NA Intergenic Intergenic 6375 NM_003107 6659 Hs.643910 NM_003107 ENSG00000124766 SOX4 EVI16 SRY-box 4 protein-coding 3.444 2.823 nan 4.276 3.534 2.036 2.964 2.082 0.307 1.811 0.939 5.653 nan 3.628 0.147 3.116 3.961 4.902 nan 7.221 5.862 nan 1.535 10.732 10.737 2.343 3.126 4.433 5.210 3.881 4.617 2.789 6.312 4.684 3.813 1.925 2.488 1.871 1.093 3.906 2.994 1.359 2.194 2.964 5.653 0.966 1.553 2.940 0.884 1890 chr4 40303120 40339913 + 0 NA intron (NR_121640, intron 1 of 2) AluSg4|SINE|Alu 3014 NR_121640 101060498 Hs.351492 NR_121640 ENSG00000249241 LOC101060498 - uncharacterized LOC101060498 ncRNA 1.123 nan nan 0.816 1.867 0.977 5.105 0.929 0.184 0.638 0.338 0.895 1.446 0.432 0.099 0.812 1.217 1.360 3.351 0.573 0.694 3.090 1.874 0.678 0.707 0.497 0.818 1.170 1.519 0.709 0.428 0.522 0.901 0.801 1.272 0.377 0.950 2.565 1.681 0.420 0.415 0.115 0.745 5.105 0.895 0.045 0.228 0.420 0.371 1049 chr17 34899397 34903472 + 0 NA intron (NM_024835, intron 1 of 13) CpG 697 NM_024835 79893 Hs.514116 NM_024835 ENSG00000278311 GGNBP2 DIF-3|DIF3|LCRG1|LZK1|ZFP403|ZNF403 gametogenetin binding protein 2 protein-coding 7.943 6.949 5.612 4.910 11.413 6.693 6.457 5.238 0.473 6.470 2.861 6.291 16.501 6.410 0.222 8.022 8.887 11.178 14.667 nan 12.700 13.105 6.414 20.429 21.478 5.132 6.702 11.043 18.164 13.587 15.349 5.718 10.425 10.961 12.348 10.396 10.712 4.584 1.753 6.803 6.993 2.677 4.459 6.457 6.291 2.680 3.721 2.924 3.646 1110 chr17 70109236 70182430 + 0 NA Intergenic Intergenic 28672 NM_000346 6662 Hs.647409 NM_000346 ENSG00000125398 SOX9 CMD1|CMPD1|SRA1|SRXX2|SRXY10 SRY-box 9 protein-coding 1.361 0.818 0.907 0.393 0.839 0.406 0.298 0.357 0.161 0.201 0.156 0.538 1.041 0.039 0.105 4.649 5.414 9.815 7.793 0.522 0.575 1.575 0.473 3.399 3.605 nan 1.408 0.907 0.866 1.227 1.125 2.232 3.788 0.406 0.467 0.120 0.226 nan 0.572 0.084 0.119 0.090 0.081 0.298 0.538 0.172 0.073 2.121 0.074 815 chr14 75529348 75546622 + 0 NA exon (NM_024643, exon 2 of 3) exon (NM_024643, exon 2 of 3) 1705 NR_110315 79696 Hs.48642 NM_024643 ENSG00000119703 ZC2HC1C C14orf140|FAM164C zinc finger C2HC-type containing 1C protein-coding 3.320 1.844 1.328 2.696 2.016 1.023 2.040 1.191 0.336 0.662 0.508 2.303 4.487 1.230 0.128 2.192 2.715 1.689 2.553 3.684 3.569 2.264 1.142 6.876 7.552 1.178 1.760 3.928 nan 2.949 2.411 1.446 1.921 2.117 2.052 0.594 0.738 3.615 nan 2.360 4.037 0.364 1.225 2.040 2.303 0.663 0.969 1.008 0.271 2231 chr7 13933848 13950921 + 0 NA intron (NM_004956, intron 12 of 13) intron (NM_004956, intron 12 of 13) 83755 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding nan 1.494 nan 0.186 1.098 0.586 0.554 0.622 0.056 1.829 0.966 0.762 1.974 0.072 0.122 nan 0.686 2.048 2.232 0.722 0.885 1.093 0.441 0.330 0.364 0.923 1.247 0.727 0.560 0.278 0.114 0.330 0.243 2.316 3.457 0.224 0.274 0.719 0.469 0.081 0.346 0.568 0.116 0.554 0.762 0.062 0.179 0.052 0.109 763 chr14 24546766 24565374 + 0 NA Intergenic Intergenic -2238 NM_006177 4901 Hs.652297 NM_006177 ENSG00000129535 NRL D14S46E|NRL-MAF|RP27 neural retina leucine zipper protein-coding nan 1.871 2.196 2.088 1.572 0.923 0.954 1.729 0.301 0.607 0.319 1.543 3.020 2.088 0.130 1.098 1.691 1.085 1.770 2.235 2.164 3.241 1.032 2.329 2.379 2.478 3.237 3.176 nan 8.474 7.663 1.284 2.076 1.620 1.390 1.429 5.224 1.473 0.804 3.493 2.033 0.544 1.693 0.954 1.543 0.477 1.081 1.118 3.604 2427 chr8 128759870 128889319 + 0 NA intron (NR_003367, intron 1 of 8) AluJo|SINE|Alu 16386 NR_031609 100302185 NR_031609 ENSG00000249859 MIR1204 hsa-mir-1204 microRNA 1204 ncRNA nan nan nan 0.303 0.552 0.258 0.089 0.889 0.210 0.160 0.140 0.077 nan 0.623 0.106 6.406 7.221 0.856 1.577 0.526 0.513 0.920 0.355 nan nan 9.722 12.222 2.392 2.592 35.252 25.940 0.416 0.780 0.207 0.292 5.322 8.949 0.276 0.371 0.290 0.073 0.062 0.082 0.089 0.077 3.171 0.517 0.318 3.909 666 chr12 115337799 115366112 + 0 NA Intergenic Intergenic -229986 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box 3 protein-coding nan nan 0.449 0.198 0.368 0.234 0.457 0.069 0.103 0.034 0.082 0.276 0.766 0.065 0.102 0.749 0.910 0.165 0.198 nan nan nan 0.052 7.544 8.110 0.129 0.271 nan nan 0.230 0.064 1.004 1.119 0.145 0.176 0.393 0.760 nan 0.267 3.019 0.468 0.024 0.017 0.457 0.276 0.010 0.115 0.730 0.314 356 chr10 34806423 34819449 + 0 NA intron (NM_001184785, intron 2 of 24) intron (NM_001184785, intron 2 of 24) 291317 NM_001184790 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 0.763 1.322 0.781 0.048 2.840 1.709 0.265 4.721 0.250 0.507 0.337 0.477 0.274 0.208 0.078 0.428 0.332 1.949 nan 0.415 0.473 4.562 1.282 2.595 2.468 0.461 0.914 0.692 0.959 0.204 0.120 0.256 0.478 0.582 1.077 0.304 0.601 0.536 0.356 0.085 0.080 0.109 0.104 0.265 0.477 0.296 0.235 0.124 1397 chr2 5505075 5531375 + 0 NA Intergenic MIRc|SINE|MIR 313025 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 0.831 0.596 0.741 0.153 0.663 0.322 0.521 0.048 0.061 0.196 0.141 0.329 0.498 0.046 0.094 0.931 0.885 3.011 5.164 0.552 0.581 0.846 0.393 0.090 0.038 0.176 0.309 0.759 0.834 0.515 0.195 0.231 0.325 0.152 0.289 0.378 0.697 0.164 0.226 0.042 0.169 0.051 0.362 0.521 0.329 0.312 0.061 0.147 0.128 1932 chr4 190602621 190631292 + 0 NA Intergenic LTR12C|LTR|ERV1 17987 NR_135513 105379514 Hs.543309 NR_135513 LOC105379514 - uncharacterized LOC105379514 ncRNA 1.420 1.780 nan 0.287 1.182 0.438 0.423 0.164 0.166 0.175 0.195 1.047 0.548 0.130 0.351 3.809 3.407 18.316 14.893 0.933 0.966 0.247 0.121 0.609 0.533 0.306 0.492 0.201 0.266 0.780 0.326 3.266 4.468 0.123 0.238 0.331 0.502 0.494 0.702 0.023 0.120 0.027 0.349 0.423 1.047 0.027 0.110 3.419 0.104 553 chr12 6860628 6889245 + 0 NA promoter-TSS (NM_002824) promoter-TSS (NM_002824) -547 NM_001330333 5763 Hs.504613 NM_002824 ENSG00000159335 PTMS ParaT parathymosin protein-coding 2.889 nan nan 3.588 2.567 1.364 2.336 0.564 0.123 1.288 0.798 2.656 5.435 2.880 0.120 1.173 1.542 1.548 2.280 nan 4.848 6.200 2.675 4.036 4.359 2.870 3.861 2.936 3.152 3.879 3.339 1.410 2.572 2.415 2.094 3.573 nan 1.112 0.527 2.953 2.597 1.067 1.894 2.336 2.656 5.618 0.741 1.057 2.873 2190 chr6 155580133 155595876 + 0 NA intron (NM_001001346, intron 1 of 1) AluY|SINE|Alu 2857 NM_001001346 49861 Hs.567491 NM_001001346 ENSG00000171217 CLDN20 - claudin 20 protein-coding nan 1.038 1.257 0.561 0.259 0.142 0.361 0.625 0.082 0.130 0.110 0.122 0.305 0.103 0.116 0.450 0.461 0.426 0.590 0.534 nan 1.185 0.488 0.428 0.529 0.662 0.848 0.445 0.987 0.712 0.506 0.349 0.379 0.205 0.258 2.358 nan 0.579 0.431 0.103 0.136 0.030 0.187 0.361 0.122 0.106 0.116 0.113 2.075 2046 chr5 173906467 173951273 + 0 NA intron (NR_125806, intron 2 of 5) intron (NR_125806, intron 2 of 5) 165513 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 0.568 0.573 0.578 0.064 0.822 0.476 1.407 0.093 0.057 0.042 0.089 0.102 1.374 0.038 0.103 0.243 0.143 5.491 nan 0.313 0.362 0.075 0.041 0.051 0.062 0.472 nan 0.414 0.423 0.177 0.074 0.222 0.304 2.034 2.349 0.088 0.215 0.180 0.185 0.034 0.138 0.677 0.016 1.407 0.102 0.015 0.059 0.088 0.039 2413 chr8 110141765 110149386 + 0 NA Intergenic Intergenic 45922 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding nan nan 1.114 0.239 0.344 0.105 0.297 0.152 0.064 0.041 0.140 0.063 0.576 0.015 0.114 0.679 0.279 1.720 0.781 0.650 0.492 nan 0.452 19.097 nan 3.798 5.594 0.986 1.006 0.458 0.186 0.272 0.437 0.175 0.145 0.171 0.367 0.493 0.497 0.036 0.326 0.037 0.092 0.297 0.063 0.053 0.219 0.049 134 chr1 62900370 62906796 + 0 NA intron (NM_003368, intron 1 of 8) CpG 1200 NM_003368 7398 Hs.35086 NM_003368 ENSG00000162607 USP1 UBP ubiquitin specific peptidase 1 protein-coding 8.271 4.799 nan 6.379 8.532 4.632 4.905 4.085 0.275 3.097 1.425 7.887 12.145 5.549 0.258 7.184 6.608 8.319 11.498 16.983 16.497 9.514 7.382 17.197 18.185 nan 9.041 10.607 15.893 10.682 12.306 5.026 9.946 5.140 5.383 10.830 8.519 3.717 2.158 5.805 5.367 0.923 4.540 4.905 7.887 2.203 2.647 2.368 3.638 2499 chr9 32549592 32554243 + 0 NA promoter-TSS (NR_102376) promoter-TSS (NR_102376) 202 NR_033992 100129250 Hs.664395 NR_033991 ENSG00000235453 TOPORS-AS1 C9orf133 TOPORS antisense RNA 1 ncRNA 4.745 8.350 3.542 6.030 5.092 3.256 2.911 2.906 0.206 2.965 1.498 4.000 15.803 3.129 0.100 3.222 3.644 12.309 12.181 9.906 7.788 9.065 5.191 10.565 11.215 5.724 6.754 5.403 7.900 7.083 7.643 2.515 5.215 5.862 7.213 4.664 4.496 4.862 2.584 3.988 2.610 1.127 3.324 2.911 4.000 0.356 1.268 1.940 1.454 1145 chr18 266486 269746 + 0 NA promoter-TSS (NM_005131) promoter-TSS (NM_005131) -57 NM_005131 9984 Hs.712543 NM_005131 ENSG00000079134 THOC1 HPR1|P84|P84N5 THO complex 1 protein-coding 6.683 4.070 4.318 5.881 3.593 2.016 2.299 2.115 0.222 2.215 1.057 16.020 nan 3.914 0.260 6.268 6.239 7.448 11.397 14.101 10.360 12.888 6.147 19.001 21.891 2.439 nan 8.557 13.026 nan 6.607 2.356 4.085 8.002 7.210 4.782 nan nan 3.237 2.745 1.885 1.220 1.629 2.299 16.020 1.607 2.552 0.876 1.873 2112 chr6 34503004 34524303 + 0 NA intron (NM_012391, intron 1 of 5) AluSx1|SINE|Alu 10457 NM_012391 25803 Hs.485158 NM_012391 ENSG00000124664 SPDEF PDEF|bA375E1.3 SAM pointed domain containing ETS transcription factor protein-coding nan 1.850 nan 0.363 0.305 0.181 0.325 0.176 0.113 0.650 0.376 0.355 1.415 0.122 0.080 0.551 0.699 0.270 nan nan 0.935 0.698 0.310 0.486 0.559 0.992 1.535 1.790 2.089 1.637 1.795 0.349 0.353 2.131 1.707 1.226 1.598 2.086 1.068 0.369 0.166 0.964 0.116 0.325 0.355 0.863 1.155 0.019 0.452 2451 chr8 144896314 144912663 + 0 NA intron (NM_001271097, intron 1 of 9) intron (NM_001271097, intron 1 of 9) 6791 NM_001136033 22827 Hs.521924 NM_014281 ENSG00000179950 PUF60 FIR|RoBPI|SIAHBP1|VRJS poly(U) binding splicing factor 60 protein-coding 3.658 1.418 nan 2.619 2.376 1.482 2.427 0.977 0.187 0.521 0.327 2.820 5.652 1.174 0.087 2.396 3.729 2.456 3.392 nan 4.850 nan 1.108 4.277 4.509 1.186 1.978 1.861 2.610 1.959 2.061 1.912 3.326 1.392 1.608 2.244 2.288 1.652 0.875 3.672 1.965 0.342 0.880 2.427 2.820 0.330 1.619 0.586 0.734 2030 chr5 149155924 149191313 + 0 NA intron (NM_001172699, intron 1 of 10) MER58A|DNA|hAT-Charlie 22115 NM_001172699 133522 Hs.483816 NM_133263 ENSG00000155846 PPARGC1B ERRL1|PERC|PGC-1(beta)|PGC1B PPARG coactivator 1 beta protein-coding nan 1.546 0.680 0.990 0.290 0.127 0.249 0.128 0.086 0.322 0.165 0.183 0.793 0.089 0.122 0.474 0.828 0.323 0.536 0.332 0.308 1.153 0.251 0.739 0.837 0.577 0.973 4.114 4.198 0.774 0.746 0.678 0.793 0.887 1.461 0.438 1.149 0.666 0.447 0.130 0.405 0.136 0.548 0.249 0.183 0.130 0.682 0.372 0.239 2496 chr9 22369362 22382405 + 0 NA Intergenic Intergenic -70957 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 1.478 nan nan 0.303 0.207 0.098 0.788 0.116 0.047 0.660 0.271 0.046 0.331 0.033 0.085 0.114 0.107 0.194 0.563 0.355 0.421 3.111 0.972 0.071 0.062 2.737 3.099 0.093 0.109 2.488 2.110 0.130 0.208 4.378 5.402 0.472 0.887 5.893 2.496 0.020 0.054 1.382 0.581 0.788 0.046 0.141 0.676 0.023 0.360 1250 chr19 3983488 3991163 + 0 NA intron (NR_031672, intron 2 of 2) AluSx1|SINE|Alu -1864 NM_001961 1938 Hs.515070 NM_001961 ENSG00000167658 EEF2 EEF-2|EF-2|EF2|SCA26 eukaryotic translation elongation factor 2 protein-coding 2.977 3.235 5.738 2.993 5.069 2.753 3.068 1.658 0.370 1.928 1.057 3.712 11.213 3.273 0.125 4.792 5.409 4.616 5.986 7.953 6.224 5.426 2.326 6.681 6.965 3.979 4.903 7.761 nan 7.509 8.384 2.236 3.590 5.958 5.477 4.027 4.238 4.695 2.312 3.509 7.166 1.033 1.736 3.068 3.712 1.147 1.757 3.160 1.550 933 chr16 4343330 4378837 + 0 NA Intergenic Intergenic -3679 NM_001318918 84662 Hs.592087 NM_032575 ENSG00000126603 GLIS2 NKL|NPHP7 GLIS family zinc finger 2 protein-coding 1.234 nan 1.994 1.122 1.122 0.678 0.980 0.721 0.340 0.309 0.252 1.599 2.621 2.052 0.083 1.031 1.997 0.320 0.598 2.014 1.789 nan 0.651 1.969 1.835 0.532 nan 1.432 2.214 1.056 0.855 0.536 1.079 0.406 0.412 0.843 1.395 1.020 0.581 1.659 1.055 0.092 0.338 0.980 1.599 0.120 0.431 0.505 0.359 682 chr12 124980447 125063176 + 0 NA intron (NM_001077261, intron 1 of 47) intron (NM_001077261, intron 1 of 47) 30199 NM_001077261 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 1.743 1.836 1.543 0.812 1.030 0.520 1.906 0.904 0.145 0.758 0.503 1.674 3.291 0.849 0.099 1.493 2.387 1.391 2.569 2.250 2.304 nan 0.662 0.819 0.814 1.691 2.487 2.674 3.673 3.928 3.764 0.717 1.183 1.137 1.270 1.484 3.196 1.683 1.053 1.355 1.439 0.373 0.515 1.906 1.674 0.964 1.216 0.562 0.693 2053 chr6 1593639 1617020 + 0 NA promoter-TSS (NR_125804) promoter-TSS (NR_125804) -437 NR_125804 101927703 Hs.607964 NR_125804 FOXCUT LINC01379|TCONS_00011636 FOXC1 upstream transcript (non-protein coding) ncRNA 1.218 1.583 3.576 1.592 1.885 0.941 0.991 2.016 0.187 0.270 0.153 0.441 1.006 0.537 0.077 0.446 0.397 2.611 4.974 0.896 0.636 1.221 0.340 1.049 1.003 0.483 0.921 0.620 1.050 0.521 0.286 0.452 0.491 0.492 0.633 0.219 0.503 0.898 0.513 0.072 0.155 0.036 2.996 0.991 0.441 0.037 1.938 0.101 0.111 1387 chr2 738569 743204 + 0 NA Intergenic MLT1D|LTR|ERVL-MaLR -63447 NM_152834 129787 Hs.43899 NM_152834 ENSG00000151353 TMEM18 - transmembrane protein 18 protein-coding 2.079 0.737 0.778 0.362 0.999 0.590 3.707 0.048 0.139 0.338 0.392 0.749 21.755 0.533 0.136 1.151 1.538 1.938 2.999 4.802 4.400 0.800 0.312 0.904 1.002 1.336 1.848 3.773 5.154 1.319 1.718 2.087 5.342 0.107 0.065 0.751 1.105 1.193 0.722 0.823 14.447 0.021 0.360 3.707 0.749 0.313 0.815 6.111 0.509 2473 chr9 3489693 3532568 + 0 NA intron (NM_134428, intron 1 of 17) intron (NM_134428, intron 1 of 17) 14871 NM_134428 5991 Hs.136829 NM_002919 ENSG00000080298 RFX3 - regulatory factor X3 protein-coding 1.719 3.461 2.370 1.197 3.208 1.634 1.631 1.031 0.108 2.388 1.281 2.055 2.960 1.576 0.109 1.958 1.719 5.347 7.224 2.945 2.906 5.643 3.280 3.626 3.787 5.271 6.041 2.376 4.056 1.681 1.598 1.308 2.121 6.207 6.868 1.363 nan 2.672 1.692 1.573 1.297 1.326 1.249 1.631 2.055 0.371 0.883 1.060 0.202 884 chr15 67122537 67147751 + 0 NA Intergenic CpG 113709 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LOC102723481 - uncharacterized LOC102723481 ncRNA 0.770 0.790 nan 0.101 0.318 0.155 0.418 1.204 0.159 0.092 0.124 0.252 0.617 0.167 0.075 0.292 0.224 1.629 7.561 0.320 0.349 nan 0.143 0.302 0.260 0.336 0.657 0.249 0.316 0.584 0.353 0.318 0.352 0.183 0.274 0.203 0.287 0.364 0.321 0.044 0.077 0.045 0.063 0.418 0.252 0.050 0.093 0.049 0.049 949 chr16 30062844 30088856 + 0 NA promoter-TSS (NM_001127617) promoter-TSS (NM_001127617) 32 NM_001127617 226 Hs.513490 NM_000034 ENSG00000149925 ALDOA ALDA|GSD12|HEL-S-87p aldolase, fructose-bisphosphate A protein-coding 2.821 2.126 2.037 3.544 3.599 1.930 2.397 1.073 0.304 0.931 0.558 2.562 8.183 1.524 0.098 2.033 2.567 2.232 3.449 3.317 3.010 4.967 2.362 4.002 3.971 2.095 2.815 5.170 7.092 3.655 3.865 1.680 2.723 3.244 3.591 2.045 3.358 1.855 1.012 3.864 1.718 0.891 1.343 2.397 2.562 0.867 2.590 1.180 1.641 379 chr10 124757719 124793806 + 0 NA intron (NM_001330174, intron 1 of 9) MER57A1|LTR|ERV1 7333 NM_001609 36 Hs.81934 NM_001609 ENSG00000196177 ACADSB 2-MEBCAD|ACAD7|SBCAD acyl-CoA dehydrogenase, short/branched chain protein-coding nan 0.764 0.881 0.284 0.686 0.351 0.192 0.278 0.125 0.183 0.123 0.492 0.725 0.211 0.096 2.875 2.594 4.559 4.978 0.373 0.392 1.041 0.601 0.754 0.761 0.416 0.642 1.045 1.348 0.462 0.394 2.331 3.765 0.137 0.203 0.763 1.366 0.621 0.502 0.067 0.219 0.026 0.169 0.192 0.492 0.078 0.233 3.086 0.439 1529 chr2 212253495 212288348 + 0 NA intron (NM_005235, intron 25 of 27) L2c|LINE|L2 788626 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA nan 1.063 nan 0.502 0.460 0.215 0.163 0.081 0.065 0.462 0.287 0.432 0.325 0.053 0.109 0.662 0.604 0.433 0.550 0.320 0.391 2.425 0.952 0.276 0.326 0.484 0.701 0.695 nan 0.402 0.205 0.245 0.441 0.685 0.725 0.225 0.358 0.413 0.387 0.034 0.036 0.150 0.158 0.163 0.432 0.014 0.299 0.145 0.042 2002 chr5 90932525 90941415 + 0 NA Intergenic Intergenic -257780 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding nan 5.093 0.566 0.079 0.247 0.251 0.188 0.160 0.127 0.035 0.047 0.291 0.061 0.121 0.235 0.133 1.886 0.437 0.288 0.407 0.333 0.121 0.162 0.180 0.446 0.472 0.303 0.333 0.547 0.140 0.079 0.186 0.148 0.182 0.242 nan 0.564 0.351 0.013 0.050 0.010 0.018 0.188 0.332 0.044 0.112 819 chr14 81386928 81409539 + 0 NA intron (NM_152446, intron 1 of 23) Charlie3|DNA|hAT-Charlie 7651 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding nan 0.873 1.022 0.368 0.548 0.369 0.395 0.374 0.093 0.152 0.163 0.261 1.034 0.383 0.112 0.401 0.494 0.454 0.747 1.060 1.204 0.502 0.200 1.467 1.357 0.757 1.004 0.629 0.666 2.038 1.818 0.296 0.566 0.901 0.904 1.658 6.174 1.340 0.966 0.291 0.420 0.240 0.885 0.395 0.261 0.132 0.157 0.163 1.476 1598 chr20 30145410 30202380 + 0 NA Intergenic AluSx|SINE|Alu -12829 NR_046853 100874042 Hs.373741 NR_046853 ENSG00000230613 HM13-AS1 - HM13 antisense RNA 1 ncRNA 2.206 4.615 1.377 2.834 2.383 1.178 20.464 1.396 0.706 1.266 0.717 5.722 8.475 4.432 0.218 3.083 3.231 3.620 5.812 4.187 nan 8.861 2.041 6.110 6.224 2.548 3.406 1.939 2.269 1.943 1.651 1.303 2.301 3.466 4.064 1.677 nan 1.827 0.873 5.232 1.899 1.078 2.329 20.464 5.722 1.401 2.713 1.427 0.547 977 chr16 54959715 54966556 + 0 NA promoter-TSS (NM_001308963) promoter-TSS (NM_001308963) -34 NR_034105 643911 Hs.237396 NM_001308963 CRNDE CRNDEP|LINC00180|NCRNA00180|PNAS-108|lincIRX5 colorectal neoplasia differentially expressed (non-protein coding) protein-coding 6.624 nan 6.821 6.110 2.623 1.431 7.502 1.985 0.140 0.272 0.059 4.236 12.761 2.804 0.073 1.735 1.831 1.458 1.788 8.238 4.999 7.593 3.553 8.011 7.340 1.877 nan nan nan nan 1.416 0.428 0.497 2.004 2.281 0.805 nan nan 1.079 3.381 2.504 0.485 3.357 7.502 4.236 0.866 2.349 0.158 0.054 1577 chr20 14311848 14318379 + 0 NA intron (NM_198391, intron 1 of 2) intron (NM_198391, intron 1 of 2) 3200 NM_013281 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 1.266 nan 1.230 0.312 0.365 0.248 0.803 1.737 0.148 0.136 0.306 0.184 0.606 0.116 0.067 0.879 0.734 1.953 2.892 0.674 0.684 5.063 1.372 11.549 11.949 6.628 7.264 0.702 1.215 3.043 2.109 0.281 0.579 2.315 2.186 1.729 2.882 0.888 0.735 0.009 0.014 0.260 0.111 0.803 0.184 0.182 0.292 0.075 2.002 860 chr15 37383875 37406845 + 0 NA Intergenic Intergenic -1860 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 HsT18361|MRG1 Meis homeobox 2 protein-coding 2.871 nan nan 0.818 1.154 0.623 1.762 2.115 0.315 1.376 1.060 0.459 2.800 4.433 0.128 1.250 2.091 0.647 0.996 2.794 2.525 1.391 0.544 1.519 1.576 2.259 3.084 1.230 2.031 2.067 2.178 1.473 3.295 8.401 6.860 4.072 4.156 1.094 0.706 0.630 1.180 2.818 1.573 1.762 0.459 0.314 0.194 1.349 1.679 1068 chr17 38458979 38508014 + 0 NA intron (NM_001145301, intron 1 of 8) intron (NM_001145301, intron 1 of 8) 9023 NM_001145301 5914 Hs.654583 NM_000964 ENSG00000131759 RARA NR1B1|RAR retinoic acid receptor alpha protein-coding nan 1.636 0.849 0.774 1.780 0.964 1.204 1.762 0.350 0.690 0.565 1.455 2.630 0.595 0.081 1.427 2.520 0.992 1.972 nan 2.226 1.102 0.463 1.832 1.921 1.293 1.803 2.722 3.261 nan 1.070 0.585 0.824 0.535 0.544 1.178 2.289 1.551 0.905 1.092 0.586 0.174 1.610 1.204 1.455 0.510 1.764 0.218 0.567 471 chr11 65234823 65278884 + 0 NA Intergenic Intergenic -8356 NR_144567 378938 Hs.621695 NR_002819 MALAT1 HCN|LINC00047|NCRNA00047|NEAT2|PRO2853 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) ncRNA nan 5.178 2.823 5.361 6.029 3.243 4.439 3.126 0.691 3.213 1.435 5.253 9.932 8.527 0.288 7.859 10.469 3.015 5.853 9.875 8.078 7.644 3.832 8.429 8.788 5.928 7.464 8.264 9.537 7.120 7.105 6.498 12.284 9.450 9.569 3.657 5.052 3.270 1.865 5.618 7.761 1.907 2.399 4.439 5.253 1.306 3.831 4.494 1.467 1121 chr17 75131475 75167197 + 0 NA intron (NM_001039573, intron 3 of 17) AluSz|SINE|Alu 12331 NM_001143999 6397 Hs.464184 NM_003003 ENSG00000129657 SEC14L1 PRELID4A|SEC14L SEC14 like lipid binding 1 protein-coding 1.543 2.297 1.699 1.621 1.089 0.645 0.768 1.673 0.280 2.819 1.553 2.246 2.235 0.549 0.166 4.259 3.475 2.158 1.604 1.663 1.703 4.494 1.775 14.731 14.934 nan 1.472 2.005 3.160 1.345 0.965 1.568 2.133 2.936 3.795 0.710 1.209 nan 0.993 0.283 1.228 1.142 0.475 0.768 2.246 0.223 0.920 1.829 0.215 2174 chr6 126109951 126143638 + 0 NA intron (NR_126386, intron 1 of 2) MIRb|SINE|MIR 13210 NR_126386 104355145 Hs.590370 NR_126386 ENSG00000232131 NCOA7-AS1 - NCOA7 antisense RNA 1 ncRNA 1.827 1.275 1.280 1.061 2.813 1.475 0.968 1.894 0.236 0.352 0.254 0.954 1.798 0.658 0.127 1.591 2.147 0.778 1.898 1.877 1.733 2.722 1.170 1.150 1.210 1.035 1.337 0.987 1.295 1.418 1.441 1.006 1.512 2.636 2.630 0.580 1.051 0.842 0.586 2.722 2.148 0.902 0.314 0.968 0.954 0.306 0.465 1.302 0.408 2116 chr6 36085309 36101585 + 0 NA Intergenic Intergenic -4814 NM_002754 5603 Hs.178695 NM_002754 ENSG00000156711 MAPK13 MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta mitogen-activated protein kinase 13 protein-coding nan 2.570 nan 3.517 1.549 0.838 0.563 0.273 0.098 1.611 0.831 2.547 3.229 0.113 0.111 2.408 2.884 1.471 nan nan 2.675 4.043 1.282 3.871 3.831 0.436 0.744 5.511 6.715 0.864 0.697 1.302 2.599 2.775 2.800 0.614 1.403 1.906 0.997 3.268 2.718 0.626 0.603 0.563 2.547 0.462 1.134 1.054 0.370 1372 chr19 55948837 55973199 + 0 NA Intergenic Intergenic -6788 NM_001145176 729956 Hs.6664 NM_175908 ENSG00000187902 SHISA7 - shisa family member 7 protein-coding 0.978 0.874 0.793 0.713 0.979 0.565 1.619 0.169 0.103 0.288 0.160 0.431 1.452 0.401 0.107 0.750 0.931 0.331 0.555 1.518 1.101 3.064 1.122 0.271 0.306 0.482 0.763 0.689 1.131 0.799 0.655 1.036 1.200 1.393 0.959 0.630 1.019 0.996 0.596 2.392 2.584 0.239 0.251 1.619 0.431 0.271 0.336 1.200 0.187 1069 chr17 38801129 38806144 + 0 NA intron (NM_003079, intron 1 of 10) MIRb|SINE|MIR 467 NM_003079 6605 Hs.743978 NM_003079 ENSG00000073584 SMARCE1 BAF57|CSS5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 protein-coding nan 4.899 4.433 2.684 9.727 5.218 4.179 3.331 0.097 3.292 1.956 7.231 10.621 2.820 0.107 11.700 10.853 10.949 13.817 nan 13.799 9.731 7.716 25.049 26.858 4.744 5.662 11.302 17.536 nan 11.364 8.915 12.134 7.348 7.522 10.288 4.730 4.000 2.481 4.519 3.891 0.908 2.152 4.179 7.231 1.666 2.595 1.916 2.027 365 chr10 88087936 88102341 + 0 NA intron (NM_017551, intron 2 of 15) MER103C|DNA|hAT-Charlie 31112 NM_017551 2894 Hs.530653 NM_017551 ENSG00000182771 GRID1 GluD1 glutamate ionotropic receptor delta type subunit 1 protein-coding 0.628 0.612 0.597 0.015 6.057 3.128 0.223 0.047 0.090 0.454 0.259 0.706 0.981 0.023 0.055 0.376 0.343 0.191 0.280 0.608 0.550 2.891 1.230 0.078 0.104 0.244 0.309 0.345 0.756 0.261 0.162 0.186 0.187 1.647 1.582 0.210 0.350 2.121 1.001 0.514 0.518 0.852 0.059 0.223 0.706 0.074 0.028 0.027 0.079 1265 chr19 13056421 13068825 + 0 NA intron (NM_001270363, intron 7 of 7) L2b|LINE|L2 5445 NM_052850 90480 Hs.515164 NM_052850 ENSG00000179271 GADD45GIP1 CKBBP2|CKbetaBP2|CRIF1|MRP-L59|PLINP|PLINP-1|PRG6|Plinp1 GADD45G interacting protein 1 protein-coding 4.148 1.955 7.228 2.173 2.757 1.320 1.748 1.134 0.339 1.428 0.921 2.587 1.693 1.768 0.103 2.473 2.647 2.554 3.684 3.955 4.329 5.599 2.339 5.605 5.332 2.649 4.000 3.646 4.832 6.835 6.131 1.412 2.319 2.704 3.717 4.509 6.205 3.465 1.512 3.740 1.076 1.012 0.788 1.748 2.587 1.417 1.591 0.607 2.898 1052 chr17 35860339 35881016 + 0 NA intron (NM_007026, intron 1 of 2) intron (NM_007026, intron 1 of 2) 20726 NM_007026 11072 Hs.91448 NM_007026 ENSG00000276023 DUSP14 MKP-L|MKP6 dual specificity phosphatase 14 protein-coding nan 1.043 0.714 0.068 0.483 0.263 0.288 0.178 0.094 0.187 0.174 0.209 0.416 0.121 0.100 3.835 3.676 1.397 1.274 nan 0.601 0.448 0.154 0.763 0.690 0.525 0.743 0.423 0.544 nan 3.169 1.242 2.067 0.191 0.147 0.781 1.429 0.492 0.529 0.121 0.169 0.042 0.219 0.288 0.209 0.221 0.063 1.804 0.313 2550 chr9 130247219 130268890 + 0 NA intron (NM_001005373, intron 22 of 25) L1MC|LINE|L1 43520 NM_001005374 90678 Hs.495188 NM_138361 ENSG00000148356 LRSAM1 CMT2P|RIFLE|TAL leucine rich repeat and sterile alpha motif containing 1 protein-coding nan 0.653 4.536 0.345 0.364 0.222 0.282 0.121 0.097 0.250 0.150 0.174 0.536 0.065 0.058 0.283 0.571 0.320 0.435 1.107 1.139 nan 0.171 0.488 0.537 0.315 0.502 1.051 1.526 1.531 1.693 0.232 0.223 0.237 0.259 0.376 0.597 1.028 0.613 0.129 0.094 0.043 0.150 0.282 0.174 0.922 0.122 0.023 0.120 1913 chr4 106063431 106069861 + 0 NA promoter-TSS (NM_017628) promoter-TSS (NM_017628) -386 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 2.923 nan nan 2.891 3.995 2.075 2.494 2.187 0.299 0.782 0.588 3.333 8.599 2.100 0.088 4.000 4.019 13.356 11.857 5.257 4.291 2.365 0.885 7.466 7.703 2.149 nan 2.531 4.595 3.751 4.290 1.812 3.804 2.158 1.533 3.128 nan 2.087 1.139 0.785 1.902 0.324 1.654 2.494 3.333 0.316 1.179 1.172 0.977 1585 chr20 20174469 20224425 + 0 NA intron (NM_015585, intron 17 of 26) intron (NM_015585, intron 17 of 26) -149318 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 2.164 1.656 nan 2.277 2.806 1.496 0.857 0.118 0.068 1.510 0.824 2.651 2.430 0.035 0.069 0.771 1.160 0.247 0.764 3.437 2.957 7.530 2.675 0.245 0.292 1.899 2.556 5.215 4.910 3.932 3.662 0.390 0.648 4.618 5.815 0.652 1.707 2.796 1.451 1.259 3.391 1.240 1.268 0.857 2.651 1.287 2.700 0.272 2.766 614 chr12 54548793 54568560 + 0 NA Intergenic MIRc|SINE|MIR 24065 NM_001243790 23583 Hs.632721 NM_014311 ENSG00000123415 SMUG1 FDG|HMUDG|UNG3 single-strand-selective monofunctional uracil-DNA glycosylase 1 protein-coding nan 1.058 2.175 0.148 0.561 0.317 0.667 0.194 0.097 0.254 0.254 0.920 4.402 0.094 0.063 nan 6.887 1.063 1.471 1.130 nan 1.501 0.675 0.922 1.025 1.535 nan 2.898 nan 1.646 1.769 2.864 4.569 3.107 2.488 1.445 3.598 1.543 1.159 0.789 4.685 1.387 0.056 0.667 0.920 0.978 0.339 5.762 1.224 590 chr12 27862472 27865235 + 0 NA exon (NM_001190864, exon 1 of 7) exon (NM_001190864, exon 1 of 7) 147 NM_001190864 60488 Hs.714076 NM_021821 ENSG00000061794 MRPS35 HDCMD11P|MDS023|MRP-S28|MRPS28 mitochondrial ribosomal protein S35 protein-coding nan nan nan 7.951 2.108 1.620 2.917 0.977 0.077 2.964 1.246 4.460 8.642 5.684 0.204 3.398 3.729 5.916 9.242 7.490 6.950 12.161 3.799 19.403 19.676 4.448 4.889 4.688 8.000 6.149 6.185 2.407 5.041 2.786 2.432 6.132 5.818 4.462 2.399 1.472 1.599 0.379 1.992 2.917 4.460 10.665 4.173 1.391 1.840 2024 chr5 142592947 142612414 + 0 NA 3' UTR (NM_001135608, exon 23 of 23) 3' UTR (NM_001135608, exon 23 of 23) 30615 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA nan 1.139 0.688 0.709 0.544 0.305 0.637 0.306 0.091 0.120 0.113 0.566 3.382 0.089 0.101 0.187 0.253 0.252 0.361 2.641 2.262 0.807 0.384 0.266 0.281 1.274 1.641 2.206 2.314 0.457 0.414 0.325 0.582 0.345 0.326 0.255 0.610 1.066 0.765 0.818 4.078 0.095 0.139 0.637 0.566 0.295 0.511 0.768 0.120 2369 chr8 59912150 59978077 + 0 NA intron (NM_014729, intron 1 of 8) intron (NM_014729, intron 1 of 8) 86654 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 1.732 nan 1.381 0.926 1.905 0.896 0.539 0.112 0.075 0.517 0.266 1.149 1.314 0.197 0.084 0.368 0.427 0.251 0.416 1.468 1.506 0.932 0.542 0.084 0.066 2.097 nan 0.746 0.741 0.445 0.220 0.086 0.138 3.793 5.153 0.149 0.247 1.622 0.833 0.494 0.523 1.078 0.717 0.539 1.149 0.044 1.216 0.025 0.101 2583 chrX 12988069 13008308 + 0 NA Intergenic Intergenic 4962 NM_021109 7114 Hs.437277 NM_021109 ENSG00000205542 TMSB4X FX|PTMB4|TB4X|TMSB4 thymosin beta 4, X-linked protein-coding 1.663 nan 1.694 2.269 2.172 0.998 0.593 2.011 0.167 0.317 0.189 1.508 5.237 2.871 0.080 0.446 0.470 1.459 3.023 2.548 1.967 6.612 2.503 1.037 1.008 1.481 1.853 2.286 2.553 2.122 2.268 0.646 1.017 2.120 2.015 1.070 1.864 1.344 0.791 0.455 0.273 0.381 0.506 0.593 1.508 0.454 1.354 0.356 0.293 2209 chr7 1262580 1269371 + 0 NA Intergenic Intergenic -6679 NM_001080461 340260 Hs.232272 NM_001080461 ENSG00000164853 UNCX UNCX4.1 UNC homeobox protein-coding 5.535 0.623 13.860 0.052 0.224 0.118 0.107 0.089 0.032 0.140 0.072 0.123 nan 0.098 0.142 0.246 0.198 0.111 nan 0.467 0.269 nan 0.097 0.246 0.310 0.126 0.226 nan 0.281 2.215 2.661 0.158 0.146 0.148 0.202 0.139 0.538 0.293 0.207 0.030 0.052 0.017 0.047 0.107 0.123 1.102 0.075 0.007 0.091 2316 chr7 125202493 125211257 + 0 NA Intergenic L1P3|LINE|L1 -302530 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 1.122 0.617 0.789 0.050 0.195 0.193 0.132 0.093 0.137 0.746 0.925 0.155 0.249 0.050 0.172 0.285 0.245 0.195 0.315 0.256 0.403 0.130 0.081 0.321 0.298 3.860 4.322 0.233 0.268 10.076 12.294 0.210 0.180 1.050 0.635 2.188 3.018 0.416 0.403 0.037 0.040 0.171 0.082 0.132 0.155 0.060 1.451 0.057 1.157 858 chr15 32951834 32987493 + 0 NA intron (NM_001144757, intron 2 of 5) MamRep605|Unknown|Unknown -4397 NR_135505 105370757 Hs.738329 NR_135505 ENSG00000241818 LOC105370757 - uncharacterized LOC105370757 ncRNA 0.771 nan nan 0.266 0.542 0.274 0.353 1.567 0.175 0.302 0.227 0.195 0.559 0.067 0.069 0.373 0.302 3.851 6.877 0.340 0.358 0.219 0.083 0.148 0.140 0.363 0.564 0.543 0.621 0.514 0.219 0.737 0.723 0.940 1.513 0.218 0.282 1.028 0.615 1.026 0.190 0.302 0.027 0.353 0.195 0.051 0.179 0.423 0.073 624 chr12 57021546 57032342 + 0 NA intron (NM_013449, intron 1 of 28) intron (NM_013449, intron 1 of 28) -2829 NM_001300905 11176 Hs.314263 NM_013449 ENSG00000076108 BAZ2A TIP5|WALp3 bromodomain adjacent to zinc finger domain 2A protein-coding nan 2.606 2.737 2.770 2.800 1.782 2.079 2.784 0.343 2.371 1.070 2.802 6.997 1.839 0.080 nan 3.892 3.135 4.870 5.323 nan 5.476 1.944 5.590 6.089 2.208 nan 5.492 nan 4.660 4.092 1.434 3.327 2.345 2.534 4.018 8.714 2.770 1.291 0.938 4.798 0.804 1.240 2.079 2.802 0.929 2.077 1.530 3.319 2031 chr5 150283399 150285608 + 0 NA promoter-TSS (NM_001172831) promoter-TSS (NM_001172831) 42 NM_052860 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 1.157 nan 1.037 3.743 3.549 1.888 2.069 0.144 0.846 0.190 3.520 0.555 5.353 0.104 1.158 1.142 0.141 0.115 5.765 6.520 12.280 8.083 12.612 13.588 4.833 6.234 15.607 24.283 12.051 11.884 3.232 4.409 5.361 5.951 6.267 4.574 5.152 3.353 2.913 1.720 0.254 0.473 3.520 1.928 0.448 1.728 2543 chr9 127622383 127633661 + 0 NA intron (NM_030978, intron 2 of 5) AluSx1|SINE|Alu 3625 NM_030978 81873 Hs.132499 NM_030978 ENSG00000136950 ARPC5L ARC16-2 actin related protein 2/3 complex subunit 5 like protein-coding nan nan 3.479 4.270 3.173 1.487 3.105 1.849 0.483 1.698 0.836 3.747 nan 2.993 0.215 2.786 2.674 4.866 7.531 5.473 5.005 4.078 1.833 9.079 9.005 2.076 nan 5.642 9.100 7.229 7.947 2.277 3.845 4.017 4.498 4.447 4.673 nan 1.438 3.045 1.799 0.573 0.956 3.105 3.747 0.932 3.161 0.613 1.566 1014 chr17 7587022 7593658 + 0 NA promoter-TSS (NM_001143991) promoter-TSS (NM_001143991) -418 NM_001143991 55135 Hs.408312 NM_018081 ENSG00000141499 WRAP53 DKCB3|TCAB1|WDR79 WD repeat containing antisense to TP53 protein-coding 6.587 3.574 3.872 4.696 10.117 4.710 6.553 2.171 0.169 2.536 1.119 6.905 12.900 14.652 0.575 15.388 15.202 9.771 12.589 15.030 13.149 10.447 7.664 11.470 11.813 5.185 6.909 10.791 14.448 5.957 8.342 10.095 12.461 6.291 5.860 11.195 13.159 2.918 1.546 7.967 4.910 0.789 4.391 6.553 6.905 2.707 4.271 3.500 3.566 928 chr16 3142335 3163974 + 0 NA Intergenic AluJo|SINE|Alu -3836 NM_001282415 84891 Hs.334515 NM_032805 ENSG00000130182 ZSCAN10 ZNF206 zinc finger and SCAN domain containing 10 protein-coding 1.170 nan 1.346 1.720 1.102 0.590 0.798 0.310 0.171 0.455 0.303 0.658 2.164 0.594 0.064 0.747 0.859 0.506 0.776 1.163 1.145 nan 1.379 0.906 0.921 0.780 nan 1.030 1.489 1.168 0.962 0.687 0.794 1.187 1.096 0.835 1.274 1.435 0.973 0.394 1.090 0.185 0.274 0.798 0.658 0.260 0.586 0.347 0.246 1476 chr2 131588821 131611565 + 0 NA Intergenic Intergenic -74031 NM_015320 50649 Hs.469935 NM_015320 ENSG00000136002 ARHGEF4 ASEF|ASEF1|GEF4|STM6 Rho guanine nucleotide exchange factor 4 protein-coding nan 0.412 nan 0.034 0.422 0.141 0.521 0.059 0.078 0.040 0.081 0.142 0.898 0.100 0.078 1.127 1.873 0.563 0.757 0.491 0.460 1.353 0.289 0.455 0.490 0.219 0.368 1.345 nan 3.472 4.591 1.315 2.091 0.447 0.448 0.476 0.789 0.143 0.177 0.186 0.948 0.080 0.024 0.521 0.142 1.150 0.085 0.937 0.224 1704 chr22 21396526 21404166 + 0 NA promoter-TSS (NM_001291006) promoter-TSS (NM_001291006) 97 NR_110991 400891 Hs.291198 NM_001013675 ENSG00000187905 LRRC74B - leucine rich repeat containing 74B protein-coding 1.614 nan 3.653 1.727 0.536 0.253 0.923 0.409 0.065 0.511 0.209 0.563 1.570 0.255 0.048 0.903 1.760 0.288 0.438 5.390 4.549 5.043 1.402 0.758 0.817 1.211 2.170 4.785 6.259 1.379 1.521 0.354 0.504 0.973 0.529 0.912 0.769 5.848 3.373 0.634 1.236 0.263 0.135 0.923 0.563 0.306 1.210 0.106 0.194 827 chr14 92586515 92590526 + 0 NA promoter-TSS (NM_004545) promoter-TSS (NM_004545) 204 NM_001322272 53981 Hs.657632 NM_017437 ENSG00000165934 CPSF2 CPSF100 cleavage and polyadenylation specific factor 2 protein-coding 9.545 4.109 5.143 6.636 4.778 3.074 6.575 6.254 0.880 2.696 1.769 7.669 11.144 5.223 0.175 9.597 7.477 9.447 12.274 13.135 13.844 6.976 4.586 23.846 27.057 7.493 9.065 8.784 13.785 15.088 13.888 9.559 12.554 8.386 9.634 7.816 5.985 nan 3.451 5.841 4.678 1.588 3.599 6.575 7.669 2.016 2.456 2.151 2.314 556 chr12 6975737 6983903 + 0 NA TTS (NM_001146316) TTS (NM_001146316) 2542 NM_001258026 7167 Hs.524219 NM_000365 ENSG00000111669 TPI1 HEL-S-49|TIM|TPI|TPID triosephosphate isomerase 1 protein-coding 3.466 nan nan 5.960 2.981 1.549 2.948 0.781 0.120 1.559 1.170 2.745 8.796 4.128 0.157 1.412 2.193 3.526 4.570 nan 7.435 7.924 2.699 3.816 4.129 2.900 4.144 3.193 3.775 3.181 4.463 1.439 3.736 2.934 2.089 2.497 5.546 1.334 0.518 2.407 3.891 0.619 3.063 2.948 2.745 5.020 0.917 1.398 2.126 1595 chr20 24940620 24954992 + 0 NA intron (NM_020531, intron 8 of 8) AluSx3|SINE|Alu 17940 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 1.666 1.440 nan 0.146 0.176 0.111 0.170 0.157 0.100 0.190 0.120 0.283 0.442 0.062 0.080 0.633 0.722 0.354 0.367 0.885 0.788 0.551 0.192 0.433 0.427 0.557 0.839 1.370 1.691 5.654 5.266 0.328 0.502 0.309 0.361 1.701 3.889 1.040 0.751 0.116 0.154 0.073 0.050 0.170 0.283 1.014 0.105 0.048 2.125 2530 chr9 110915689 110931931 + 0 NA Intergenic Intergenic -671809 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 0.664 0.655 nan 0.254 0.654 0.307 0.234 0.226 0.010 0.087 0.090 0.195 0.362 0.026 0.058 1.791 2.178 4.150 2.791 0.326 0.405 0.877 0.293 8.399 8.582 0.080 0.166 0.368 nan 0.430 0.190 3.114 3.641 0.261 0.270 0.103 0.188 nan 0.549 0.027 0.049 0.030 0.062 0.234 0.195 0.114 0.082 3.276 0.031 806 chr14 68541804 68738147 + 0 NA intron (NM_001321809, intron 7 of 11) intron (NM_001321809, intron 7 of 11) 349666 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding nan nan 0.931 0.318 0.383 0.198 0.566 1.504 0.228 0.105 0.112 0.332 1.303 5.170 0.203 0.298 0.172 0.510 2.064 0.518 0.623 0.578 0.161 nan 0.487 0.520 0.832 0.526 nan 0.659 0.324 0.185 0.283 0.727 0.694 0.315 0.719 1.396 0.974 0.997 0.194 0.192 0.155 0.566 0.332 0.059 0.074 0.066 0.094 777 chr14 36960212 36998858 + 0 NA intron (NR_138596, intron 1 of 4) intron (NR_138596, intron 1 of 4) 3455 NR_138601 253970 Hs.509165 NM_001101341 ENSG00000229415 SFTA3 NANCI|SFTPH|SP-H surfactant associated 3 protein-coding 2.148 7.491 0.514 7.054 2.565 1.394 2.262 0.139 0.083 0.516 0.313 8.436 14.891 0.076 0.106 0.169 0.085 0.801 0.883 23.866 22.330 0.128 0.071 0.282 0.306 1.417 1.741 7.450 7.483 20.181 20.749 0.135 0.154 0.473 0.347 0.086 0.145 3.308 1.775 19.542 13.110 0.170 0.133 2.262 8.436 0.238 2.913 0.023 0.023 725 chr13 74706415 74711375 + 0 NA promoter-TSS (NM_007249) promoter-TSS (NM_007249) -829 NM_007249 11278 Hs.373857 NM_007249 ENSG00000118922 KLF12 AP-2rep|AP2REP|HSPC122 Kruppel like factor 12 protein-coding nan 5.839 5.366 5.799 9.776 5.494 9.750 3.119 0.637 1.274 0.464 7.331 19.603 6.641 0.150 9.256 13.656 5.547 6.776 18.005 12.755 nan 4.136 4.824 4.484 0.767 0.996 3.750 6.668 nan 11.286 2.499 8.048 6.320 4.011 5.086 nan 1.058 0.837 5.813 9.696 1.905 10.831 9.750 7.331 2.137 1.864 4.757 2.396 362 chr10 63626324 63873506 + 0 NA intron (NM_032199, intron 3 of 9) intron (NM_032199, intron 3 of 9) -59055 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 0.790 nan 0.964 0.109 0.808 0.410 0.102 1.688 0.163 0.176 0.153 0.478 0.664 4.780 0.165 0.327 0.234 2.848 5.263 0.465 0.477 0.867 0.448 0.822 0.848 0.532 0.722 0.487 0.521 0.243 0.144 0.139 0.201 0.517 0.660 0.176 nan 0.632 0.463 0.013 0.219 0.135 0.175 0.102 0.478 0.051 0.123 0.052 0.114 1608 chr20 34327340 34337186 + 0 NA Intergenic Intergenic -2005 NM_184234 9584 Hs.282901 NM_004902 ENSG00000131051 RBM39 CAPER|CAPERalpha|FSAP59|HCC1|RNPC2 RNA binding motif protein 39 protein-coding 4.425 4.786 3.816 5.019 4.442 2.399 3.745 3.717 0.554 2.320 1.058 3.751 7.728 4.150 0.198 8.834 7.972 6.626 8.811 5.620 nan 7.872 5.954 13.138 14.410 4.582 5.507 7.008 10.521 10.323 10.318 6.044 9.337 4.953 6.031 7.641 nan 1.949 1.214 2.491 3.088 1.005 2.191 3.745 3.751 1.569 2.136 2.354 2.889 2275 chr7 73234125 73270686 + 0 NA intron (NM_152559, intron 5 of 5) AluJo|SINE|Alu 4450 NM_152559 155368 Hs.647042 NM_152559 ENSG00000165171 WBSCR27 - Williams Beuren syndrome chromosome region 27 protein-coding nan 1.981 1.442 2.757 2.415 1.248 1.315 1.269 0.339 1.394 0.756 2.994 3.860 0.338 0.135 2.395 3.357 1.897 nan 4.109 3.749 2.002 1.008 0.438 0.497 0.242 nan 5.355 nan 2.088 2.133 1.438 2.334 1.995 2.368 0.463 1.126 2.526 1.302 2.650 4.294 0.688 0.701 1.315 2.994 0.744 0.837 1.964 0.239 1232 chr18 74389921 74421757 + 0 NA TTS (NR_122073) TTS (NR_122073) 3853 NR_122073 400661 Hs.514963 NR_122073 ENSG00000276397 LINC01879 - long intergenic non-protein coding RNA 1879 ncRNA nan nan 0.600 0.315 0.457 0.248 3.455 0.061 0.076 0.395 0.187 1.146 0.541 0.065 0.067 0.478 0.507 0.397 0.589 1.270 nan 3.077 1.511 0.432 0.472 0.077 0.156 1.726 nan 0.485 0.230 0.159 0.272 0.546 0.756 0.245 0.341 1.226 0.859 0.022 0.206 0.060 0.093 3.455 1.146 0.040 0.340 0.091 0.085 1821 chr3 142331815 142347292 + 0 NA intron (NM_001145319, intron 1 of 15) intron (NM_001145319, intron 1 of 15) -2713 NM_002670 5357 Hs.203637 NM_002670 ENSG00000120756 PLS1 - plastin 1 protein-coding 1.482 nan nan 1.754 3.044 1.697 0.198 0.154 0.073 2.290 0.893 2.447 0.436 0.067 0.109 0.393 0.277 0.290 0.577 1.803 1.851 nan 5.310 0.289 0.290 2.047 nan 0.782 nan nan 0.757 0.205 0.286 1.113 1.626 0.349 0.887 1.198 0.848 0.104 0.104 0.187 0.307 0.198 2.447 0.497 0.819 0.026 0.150 2376 chr8 71313494 71317374 + 0 NA promoter-TSS (NM_001321712) promoter-TSS (NM_001321712) 56 NM_001321712 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 9.742 3.588 5.589 7.252 6.341 3.188 5.366 5.033 0.620 3.659 1.581 9.309 20.045 6.069 0.138 3.117 7.213 4.382 6.188 15.582 12.204 7.144 2.997 12.380 11.956 4.634 5.722 5.676 7.519 3.710 5.119 3.182 9.752 8.300 6.295 4.995 7.334 5.263 2.581 4.215 9.386 4.291 6.896 5.366 9.309 0.706 6.561 3.952 2.957 766 chr14 29155589 29161560 + 0 NA Intergenic Intergenic 75951 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 (head to head) ncRNA 0.965 1.011 0.996 1.622 0.200 0.134 0.173 0.207 0.080 0.433 0.358 0.081 0.343 0.071 0.134 0.244 0.090 0.170 0.184 0.339 0.426 9.948 7.790 0.292 0.197 0.293 0.576 0.260 0.359 0.536 0.204 0.112 0.188 3.917 4.645 0.190 0.286 1.758 0.866 0.591 1.771 1.111 0.071 0.173 0.081 0.034 0.119 0.034 0.020 1205 chr18 53195061 53225285 + 0 NA intron (NM_001330604, intron 3 of 19) intron (NM_001330604, intron 3 of 19) -32173 NM_001243231 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding nan 0.868 0.905 0.162 0.336 0.186 0.315 0.156 0.049 0.394 0.281 0.288 0.550 0.449 0.095 0.750 0.596 4.699 2.732 0.939 1.081 4.246 1.474 2.345 2.339 0.856 1.026 0.493 0.515 0.528 0.301 0.443 0.772 3.885 4.181 0.351 0.652 nan 1.011 0.101 0.313 0.777 0.144 0.315 0.288 0.013 0.833 0.419 0.201 338 chr10 3891564 4015841 + 0 NA Intergenic Intergenic 77560 NR_134490 105376365 Hs.460114 NR_134490 ENSG00000230573 LOC105376365 - uncharacterized LOC105376365 ncRNA 0.475 0.980 0.631 0.250 0.591 0.361 0.512 0.952 0.217 0.222 0.104 0.374 0.489 5.211 0.182 0.382 0.302 0.435 0.829 0.307 0.298 1.897 1.168 0.137 0.138 0.138 0.244 0.532 0.711 0.178 0.092 0.190 0.240 0.199 0.360 0.183 0.370 0.593 0.442 0.014 0.124 0.025 0.023 0.512 0.374 0.027 0.063 0.082 0.084 1291 chr19 35152565 35170102 + 0 NA intron (NR_027620, intron 1 of 3) L1MD|LINE|L1 6603 NR_027620 643719 Hs.686754 NR_027620 SCGB1B2P SCGB4A1P secretoglobin family 1B member 2, pseudogene pseudo 2.408 1.941 1.726 4.751 1.454 0.833 0.994 0.454 0.119 1.003 0.595 1.534 6.727 1.194 0.127 1.043 1.077 0.645 0.865 3.433 2.912 2.090 0.707 4.685 4.864 1.837 2.339 1.070 1.458 nan 2.123 3.600 3.746 2.989 2.811 0.657 0.884 3.611 1.880 2.052 0.999 0.417 0.286 0.994 1.534 0.334 1.255 1.913 0.295 1887 chr4 38312086 38322290 + 0 NA Intergenic MLT1B|LTR|ERVL-MaLR 195613 NM_001253915 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 1.099 2.320 1.412 3.085 5.605 2.707 0.597 0.830 0.175 1.191 0.518 2.932 2.150 0.115 0.089 0.447 0.384 0.722 1.371 2.808 2.935 0.824 0.179 0.520 0.493 0.909 1.264 6.579 3.340 0.887 0.382 0.378 0.559 1.020 1.230 0.139 0.166 3.177 1.718 0.548 3.879 0.158 0.369 0.597 2.932 0.195 0.189 0.166 0.097 1416 chr2 24449343 24466822 + 0 NA intron (NM_006277, intron 29 of 39) L1MC1|LINE|L1 60170 NM_001040710 653140 Hs.741736 NM_001040710 ENSG00000186453 FAM228A C2orf84 family with sequence similarity 228 member A protein-coding 1.014 0.772 1.020 0.581 0.731 0.285 0.129 0.115 0.129 0.225 0.254 0.226 0.482 0.075 0.120 0.505 0.386 0.352 0.363 1.815 1.740 0.557 0.246 0.645 0.634 0.462 0.647 2.210 nan 0.522 0.174 0.257 0.363 0.335 0.218 0.442 0.880 4.123 1.564 0.043 0.208 0.055 0.086 0.129 0.226 0.067 0.087 0.109 0.207 2187 chr6 151709841 151713646 + 0 NA intron (NM_020861, intron 1 of 2) CpG 1092 NM_020861 57621 Hs.520073 NM_020861 ENSG00000181472 ZBTB2 ZNF437 zinc finger and BTB domain containing 2 protein-coding 9.304 4.800 8.255 9.277 8.570 4.952 10.934 5.117 0.370 2.378 1.053 9.796 14.395 9.376 0.244 10.807 11.389 13.013 14.472 13.173 nan 14.789 6.908 18.043 18.889 3.730 5.042 8.459 12.969 13.012 15.696 4.760 10.601 8.854 8.428 9.847 10.548 2.137 1.284 6.958 8.024 2.166 5.730 10.934 9.796 2.467 5.064 3.481 4.399 1454 chr2 85959433 86027026 + 0 NA intron (NM_032827, intron 2 of 2) MIR|SINE|MIR 12320 NM_032827 84913 Hs.135569 NM_032827 ENSG00000168874 ATOH8 HATH6|bHLHa21 atonal bHLH transcription factor 8 protein-coding nan 0.712 nan 0.250 0.470 0.201 0.871 0.912 0.149 0.155 0.167 1.029 1.725 0.114 0.105 0.770 1.306 0.694 2.421 1.953 1.483 0.699 0.188 0.488 0.581 2.941 3.999 1.045 0.773 1.801 1.980 0.329 0.340 0.376 0.466 1.136 2.877 2.016 1.168 2.766 0.249 0.126 0.098 0.871 1.029 1.027 0.510 0.060 0.889 862 chr15 41407118 41411601 + 0 NA promoter-TSS (NR_104038) promoter-TSS (NR_104038) -915 NR_104038 54617 Hs.292949 NM_017553 ENSG00000128908 INO80 INO80A|INOC1|hINO80 INO80 complex subunit protein-coding 4.264 2.731 nan 3.391 6.176 2.869 5.813 3.686 0.215 2.479 1.100 6.186 6.558 3.511 0.112 5.980 6.369 9.229 10.543 6.189 5.423 5.014 3.342 12.664 12.870 3.428 nan 6.898 12.219 10.855 11.452 4.754 7.882 6.428 7.250 7.974 5.462 3.309 2.045 2.512 3.566 1.492 2.450 5.813 6.186 2.250 2.759 2.469 2.456 1220 chr18 60733873 60745098 + 0 NA Intergenic Intergenic 247128 NM_000633 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2, apoptosis regulator protein-coding 0.712 1.362 1.863 1.383 0.266 0.185 0.115 0.054 0.187 0.028 0.147 1.446 2.445 0.068 0.135 1.126 0.829 6.706 4.109 1.826 1.246 1.994 0.563 26.624 27.451 0.175 nan 3.197 3.325 0.479 0.235 0.908 1.186 0.311 0.497 0.143 0.238 1.815 1.356 0.222 0.104 0.051 0.284 0.115 1.446 0.199 0.564 0.033 1569 chr20 3138547 3155306 + 0 NA exon (NM_001282533, exon 4 of 6) exon (NM_001282533, exon 4 of 6) -6370 NM_014948 22888 Hs.654646 NM_014948 ENSG00000185019 UBOX5 RNF37|UBCE7IP5|UIP5|hUIP5 U-box domain containing 5 protein-coding 2.213 3.212 4.282 2.703 1.225 0.607 0.938 0.415 0.148 0.627 0.287 2.988 4.514 0.647 0.080 2.589 2.891 1.424 2.130 3.650 3.237 4.158 1.315 3.876 4.292 2.716 3.467 13.070 12.189 3.027 3.225 2.171 2.692 1.879 1.677 1.687 2.507 1.903 0.865 4.097 5.278 0.269 0.319 0.938 2.988 1.085 2.709 0.822 0.554 522 chr11 118488224 118514488 + 0 NA intron (NM_001144758, intron 6 of 22) intron (NM_001144758, intron 6 of 22) -13362 NR_106773 102466719 NR_106773 ENSG00000019144 MIR6716 hsa-mir-6716 microRNA 6716 ncRNA 1.124 1.779 1.480 1.493 0.872 0.368 0.925 0.406 0.073 0.849 0.511 1.468 3.264 0.558 0.079 1.668 nan 1.211 2.206 2.651 2.780 2.519 0.654 1.282 1.343 1.839 nan 5.696 4.345 0.683 0.467 2.426 4.346 1.845 1.439 0.471 1.017 1.721 0.852 5.881 1.422 0.783 0.190 0.925 1.468 0.397 0.990 3.235 0.236 1738 chr22 43187218 43197041 + 0 NA TTS (NM_014570) TTS (NM_014570) 61279 NM_014570 26286 Hs.685225 NM_014570 ENSG00000242247 ARFGAP3 ARFGAP1 ADP ribosylation factor GTPase activating protein 3 protein-coding 1.154 nan 0.976 0.836 0.420 0.192 0.679 0.191 0.180 0.188 0.135 0.305 0.361 0.103 0.104 0.726 0.802 0.244 0.420 0.671 0.682 1.442 0.631 0.311 0.197 0.639 nan 2.976 2.788 nan 1.386 0.287 0.208 0.679 0.782 0.460 0.820 1.245 0.546 0.088 0.196 0.137 0.173 0.679 0.305 2.705 2.622 0.061 0.189 1892 chr4 41814706 41849528 + 0 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 52511 NR_104143 101927074 Hs.611425 NR_104143 ENSG00000245870 LINC00682 - long intergenic non-protein coding RNA 682 ncRNA 1.174 nan nan 0.094 0.156 0.111 0.084 0.092 0.093 0.127 0.142 0.052 0.207 0.013 0.083 0.313 0.159 0.164 0.194 0.200 0.216 0.119 0.081 0.118 0.103 0.128 0.275 0.224 0.199 1.364 1.178 0.121 0.146 0.044 0.040 1.430 5.014 0.590 0.777 0.018 0.150 0.022 0.648 0.084 0.052 0.043 0.035 0.040 2.612 987 chr16 80061030 80082692 + 0 NA Intergenic MIRb|SINE|MIR 242715 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA nan 1.707 0.546 0.339 0.461 0.237 0.171 0.037 0.122 0.029 0.054 0.078 1.401 0.010 0.088 0.259 0.176 0.190 0.492 0.334 0.334 0.098 0.056 0.278 0.342 0.074 0.144 0.778 1.362 0.389 0.182 0.088 0.111 0.052 0.058 0.060 0.134 0.220 0.267 3.550 1.012 0.022 0.153 0.171 0.078 0.207 0.028 0.023 613 chr12 54517865 54543335 + 0 NA Intergenic Intergenic 10745 NR_026656 400043 Hs.19193 NR_026656 ENSG00000250742 LOC400043 - uncharacterized LOC400043 ncRNA nan 0.783 1.392 0.077 0.252 0.135 0.183 0.258 0.082 0.094 0.110 0.113 0.782 0.115 0.072 nan 3.309 0.786 1.049 0.309 nan 0.295 0.155 2.478 2.445 0.538 nan 0.928 nan 0.961 0.855 1.342 2.186 0.522 0.397 1.343 4.670 0.504 0.554 0.119 0.342 0.170 0.022 0.183 0.113 0.253 0.052 1.346 2.113 2384 chr8 77686259 77707991 + 0 NA intron (NM_024721, intron 4 of 10) intron (NM_024721, intron 4 of 10) -101615 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 1.248 0.861 0.868 0.113 0.297 0.177 0.737 2.079 0.149 0.151 0.122 0.083 0.253 0.105 0.094 0.345 0.274 1.669 1.840 0.484 0.663 0.698 0.255 0.748 0.753 0.499 0.839 0.181 0.259 0.474 0.185 0.766 1.547 2.845 4.878 0.225 0.570 0.418 0.411 0.182 0.233 0.778 0.018 0.737 0.083 0.009 0.061 0.501 0.062 1830 chr3 166767607 166789460 + 0 NA Intergenic MLT1L|LTR|ERVL-MaLR 162062 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 0.999 1.888 0.813 0.462 0.304 0.125 1.866 0.123 0.136 0.210 0.237 0.071 0.320 0.035 0.071 0.288 0.231 0.286 0.860 0.829 0.975 12.613 7.847 0.166 0.166 0.393 0.559 nan 0.587 nan 0.445 0.113 0.167 1.227 1.337 0.399 0.866 1.164 0.761 0.040 0.134 0.288 0.040 1.866 0.071 0.057 0.055 0.032 0.221 2331 chr7 148821938 148826095 + 0 NA promoter-TSS (NM_001001661) promoter-TSS (NM_001001661) 508 NM_020781 57541 Hs.632032 NM_020781 ENSG00000197024 ZNF398 P51|P71|ZER6 zinc finger protein 398 protein-coding 7.056 2.209 4.955 5.285 6.362 2.471 5.769 4.952 1.045 2.632 1.380 10.719 11.629 9.177 0.324 7.411 8.967 6.955 10.760 9.134 7.535 8.933 3.386 11.506 12.225 5.350 6.408 5.908 7.801 5.965 6.647 4.701 9.221 6.305 5.310 5.099 7.139 5.468 nan 5.396 7.892 1.205 2.687 5.769 10.719 1.818 3.909 2.705 2.084 2309 chr7 114992546 115000908 + 0 NA Intergenic Intergenic -125318 NR_126407 104355291 NR_126407 ENSG00000233607 LINC01392 - long intergenic non-protein coding RNA 1392 ncRNA nan 0.734 0.953 0.283 0.207 0.115 0.214 0.160 0.077 0.093 0.207 0.272 0.345 0.051 0.190 0.336 0.257 0.371 0.428 0.195 0.258 0.132 0.131 0.283 0.207 0.736 0.743 1.015 0.910 0.562 0.312 0.151 0.324 4.154 6.366 0.385 0.632 0.797 0.695 0.033 0.149 1.300 0.140 0.214 0.272 0.047 0.121 0.071 0.088 1113 chr17 73118910 73128837 + 0 NA intron (NM_024585, intron 2 of 2) AluJb|SINE|Alu 4017 NM_001252377 30833 Hs.67201 NM_014595 ENSG00000125458 NT5C DNT|DNT1|HEL74|P5N2|PN-I|PN-II|UMPH2|cdN|dNT-1 5', 3'-nucleotidase, cytosolic protein-coding 2.646 2.317 1.776 3.399 2.654 1.329 2.081 1.326 0.277 0.899 0.464 1.978 4.799 2.014 0.124 2.669 3.245 1.730 3.419 2.444 2.188 3.804 1.213 1.713 1.638 nan 2.651 4.850 6.110 4.874 5.625 1.303 2.342 1.576 2.274 1.850 2.975 nan 0.751 0.851 1.548 0.327 0.961 2.081 1.978 1.368 4.761 0.666 1.135 2074 chr6 16843975 16858455 + 0 NA Intergenic Intergenic -89494 NM_001128164 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 1.433 nan 0.667 0.060 0.797 0.433 2.139 1.407 0.154 0.227 0.127 0.339 0.146 0.045 0.070 0.455 0.297 0.404 0.894 0.463 0.395 1.618 0.309 0.280 0.317 1.097 1.259 0.162 0.159 1.095 0.884 0.270 0.237 3.263 5.346 0.394 0.860 2.348 1.246 0.015 0.130 0.767 0.198 2.139 0.339 0.042 0.171 0.248 332 chr10 1549549 1568225 + 0 NA intron (NM_018702, intron 1 of 9) intron (NM_018702, intron 1 of 9) -9938 NR_033387 642394 Hs.568831 NM_001098830 ENSG00000205696 ADARB2-AS1 C10orf109|NCRNA00168|bA466B20.1 ADARB2 antisense RNA 1 ncRNA 0.440 0.426 0.558 0.528 0.420 0.195 0.550 0.123 0.121 0.804 0.389 2.984 0.312 0.062 0.094 0.546 0.478 0.133 0.136 0.784 0.863 0.492 0.180 0.250 0.226 0.097 0.213 2.229 2.235 0.146 0.064 0.340 0.602 0.032 0.073 0.060 0.118 0.363 0.371 0.056 0.465 0.005 0.128 0.550 2.984 0.058 0.252 0.233 0.033 2403 chr8 103657981 103671281 + 0 NA intron (NM_005655, intron 1 of 3) intron (NM_005655, intron 1 of 3) 1561 NR_103759 7071 Hs.435001 NM_005655 ENSG00000155090 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel like factor 10 protein-coding 5.256 nan nan 4.526 4.211 2.377 2.358 2.380 0.190 0.862 0.658 3.472 13.367 2.801 0.113 1.749 2.941 2.571 3.374 9.517 7.395 nan 1.708 5.892 5.466 1.827 nan 8.946 nan nan 4.278 1.793 3.804 2.958 2.337 2.719 nan 2.030 1.084 3.770 3.424 1.191 2.237 2.358 3.472 0.379 4.217 2.031 1.069 973 chr16 52287281 52308913 + 0 NA intron (NR_135281, intron 1 of 2) intron (NR_135281, intron 1 of 2) 5621 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility candidate 22 (non-protein coding) ncRNA nan nan nan 1.423 1.019 0.638 1.526 0.128 0.150 0.058 0.060 1.645 0.707 0.035 0.089 0.291 0.193 0.115 0.121 1.490 1.965 1.360 0.381 0.659 0.740 0.909 nan nan nan nan 0.150 0.096 0.134 0.245 0.378 0.245 nan nan 0.526 2.804 0.201 0.053 0.088 1.526 1.645 0.049 0.150 0.028 0.057 164 chr1 116378825 116386139 + 0 NA intron (NM_001111061, intron 1 of 1) intron (NM_001111061, intron 1 of 1) 851 NM_001111061 4808 Hs.46296 NM_005599 ENSG00000177551 NHLH2 HEN2|NSCL2|bHLHa34 nescient helix-loop-helix 2 protein-coding nan 1.185 5.554 0.175 0.183 0.065 0.210 0.082 0.087 0.063 0.145 0.115 2.225 0.060 0.135 0.455 0.404 0.355 0.573 6.260 nan 0.078 0.041 1.189 1.288 1.434 2.093 1.621 2.611 11.549 16.122 5.664 7.620 4.112 3.171 0.111 0.239 2.690 1.436 0.045 0.108 0.862 4.867 0.210 0.115 1.568 0.041 3.684 0.017 1672 chr21 34774648 34801077 + 0 NA intron (NM_001329128, intron 3 of 7) intron (NM_001329128, intron 3 of 7) 12660 NM_005534 3460 Hs.634632 NM_005534 ENSG00000159128 IFNGR2 AF-1|IFGR2|IFNGT1|IMD28 interferon gamma receptor 2 protein-coding 1.324 0.834 1.906 0.649 1.257 0.662 0.721 0.680 0.164 0.350 0.132 1.005 1.663 0.775 0.108 0.951 1.280 1.139 1.694 1.281 1.335 0.666 0.231 1.090 1.045 0.779 1.176 3.765 5.161 1.184 1.152 0.973 1.671 0.589 0.605 0.880 1.270 nan 0.700 0.200 2.005 0.118 0.328 0.721 1.005 0.159 0.476 0.837 0.343 1167 chr18 31375359 31395833 + 0 NA Intergenic Intergenic 227055 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 additional sex combs like 3, transcriptional regulator protein-coding nan 1.184 1.133 4.236 5.991 2.997 1.804 0.080 0.039 0.720 0.619 9.496 1.155 0.016 0.102 0.522 0.416 0.161 0.254 11.902 14.077 2.482 0.615 0.310 0.320 0.287 0.430 nan 11.089 0.785 0.606 0.089 0.186 4.647 5.142 0.300 0.740 11.341 5.673 2.314 4.607 1.322 0.295 1.804 9.496 0.384 0.550 0.072 0.108 2387 chr8 90994026 90997765 + 0 NA intron (NM_001024688, intron 1 of 16) intron (NM_001024688, intron 1 of 16) 1004 NM_002485 4683 Hs.492208 NM_002485 ENSG00000104320 NBN AT-V1|AT-V2|ATV|NBS|NBS1|P95 nibrin protein-coding nan 2.772 3.862 4.331 3.791 2.699 2.019 5.398 0.347 1.033 0.444 2.986 8.539 2.844 0.044 3.547 4.878 5.896 7.946 5.791 5.213 4.162 2.214 11.830 11.809 3.057 3.045 13.718 16.026 3.889 3.937 3.660 6.222 8.240 8.185 4.956 5.281 2.298 1.466 3.534 4.045 1.853 2.028 2.019 2.986 0.752 2.090 1.909 2.384 305 chr1 231661474 231665542 + 0 NA promoter-TSS (NM_005999) promoter-TSS (NM_005999) -891 NR_028397 100303453 Hs.13318 NR_028393 ENSG00000270106 TSNAX-DISC1 - TSNAX-DISC1 readthrough (NMD candidate) ncRNA 4.717 3.641 4.000 7.351 5.791 2.730 4.160 3.090 0.239 3.262 1.684 3.166 6.622 2.529 0.130 6.032 6.047 10.801 13.228 8.200 9.048 9.369 7.060 10.509 12.391 3.740 5.017 nan 10.162 5.603 4.983 3.797 3.947 4.522 4.430 5.779 5.764 nan 1.893 2.540 1.377 0.681 1.894 4.160 3.166 0.658 1.617 1.047 1.816 2238 chr7 20272993 20290860 + 0 NA Intergenic L2a|LINE|L2 24726 NR_134569 100506098 Hs.59203 NR_134567 ENSG00000233834 LOC100506098 - uncharacterized LOC100506098 ncRNA 0.980 1.251 1.047 0.242 0.310 0.215 0.215 0.092 0.072 0.078 0.126 0.125 0.635 0.125 0.181 0.584 0.375 1.747 nan 0.301 0.352 0.850 0.344 0.198 0.237 0.526 0.826 0.704 0.606 0.340 0.170 0.182 0.227 0.290 0.444 0.370 nan 0.455 0.557 0.240 0.051 0.053 0.031 0.215 0.125 0.038 0.046 0.085 0.152 735 chr13 100601675 100655001 + 0 NA Intergenic Intergenic -4160 NM_033132 85416 Hs.508570 NM_033132 ENSG00000139800 ZIC5 - Zic family member 5 protein-coding 2.926 6.213 2.609 5.139 0.466 0.205 7.791 0.225 0.084 3.139 1.561 0.267 11.310 0.783 0.086 0.513 0.258 0.710 1.154 5.149 4.491 6.712 2.643 1.372 1.321 1.233 nan 1.666 2.842 1.283 1.893 0.155 0.192 10.758 9.165 0.156 nan 1.252 0.761 3.797 2.639 3.199 3.168 7.791 0.267 0.836 0.450 0.032 0.046 2239 chr7 20817287 20845428 + 0 NA Intergenic Intergenic -4849 NM_182700 221833 Hs.195922 NM_182700 ENSG00000164651 SP8 BTD Sp8 transcription factor protein-coding 3.282 1.800 2.199 1.024 2.050 1.162 0.884 0.127 0.068 3.086 1.993 1.503 7.318 0.443 0.135 0.303 0.231 0.672 nan 1.800 1.499 1.575 0.620 0.705 0.670 0.805 1.171 0.989 1.356 0.478 0.275 0.148 0.176 10.340 9.187 0.127 nan 1.355 0.868 0.053 1.159 3.044 1.882 0.884 1.503 0.021 0.952 0.035 0.035 2169 chr6 118683465 118705965 + 0 NA Intergenic Intergenic -127821 NR_002730 23629 Hs.648050 NR_002730 BRD7P3 BP75 bromodomain containing 7 pseudogene 3 pseudo nan 1.897 nan 2.719 0.544 0.313 1.350 0.341 0.135 1.518 0.599 0.292 7.338 0.045 0.111 0.470 0.282 0.248 0.254 3.342 nan nan 0.297 0.311 0.267 0.327 nan 3.751 3.953 0.962 0.914 0.154 0.177 1.352 1.754 0.154 nan 2.171 1.008 6.304 1.812 0.294 0.038 1.350 0.292 0.064 1.066 0.026 0.093 159 chr1 110648388 110681956 + 0 NA Intergenic LTR67B|LTR|ERVL 10110 NM_203412 164153 Hs.374027 NM_203412 ENSG00000186150 UBL4B - ubiquitin like 4B protein-coding nan 1.248 1.384 1.994 1.233 0.607 1.276 0.107 0.091 0.440 0.255 0.722 2.615 0.081 0.105 1.093 1.185 0.241 0.263 1.527 nan 5.036 2.450 0.385 0.407 0.339 0.669 4.486 5.092 0.532 0.383 0.760 0.808 0.835 1.207 0.200 0.276 1.492 0.991 0.923 1.145 0.176 0.171 1.276 0.722 0.160 1.887 0.463 0.029 2382 chr8 76318780 76334812 + 0 NA intron (NM_001330561, intron 1 of 11) L1ME1|LINE|L1 6891 NM_001330561 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 2.191 0.828 1.025 0.253 2.255 1.150 0.449 0.954 0.100 0.879 0.517 0.253 0.727 0.490 0.101 0.739 0.499 3.067 3.986 1.241 1.101 0.782 0.279 1.998 1.860 1.250 1.494 1.251 1.939 0.802 0.659 2.119 3.080 4.694 3.526 0.372 0.502 1.571 1.391 0.021 0.338 0.975 0.045 0.449 0.253 0.012 0.602 2.080 0.093 1322 chr19 42363029 42369172 + 0 NA intron (NM_001321485, intron 3 of 5) intron (NM_001321485, intron 3 of 5) 1584 NM_001321483 6223 Hs.438429 NM_001022 ENSG00000105372 RPS19 DBA|DBA1|S19 ribosomal protein S19 protein-coding 5.040 2.881 4.890 3.265 3.466 1.460 2.322 1.451 0.132 2.344 1.048 3.290 4.785 4.571 0.169 4.375 3.812 4.727 6.256 6.134 6.506 7.174 3.673 12.580 13.323 3.501 5.694 8.580 10.564 7.819 8.784 6.564 10.823 4.302 5.325 7.953 6.708 3.603 2.122 2.985 4.182 0.571 0.813 2.322 3.290 0.916 2.000 2.468 2.075 1842 chr3 175984793 175996990 + 0 NA Intergenic Intergenic -242000 NR_107017 102465858 NR_107017 ENSG00000283333 MIR7977 hsa-mir-7977 microRNA 7977 ncRNA 0.995 1.996 1.290 4.605 3.734 1.920 0.388 0.191 0.156 2.479 1.057 2.661 2.082 0.036 0.140 0.391 0.255 0.474 0.754 3.305 4.035 13.340 7.470 0.408 0.295 0.673 0.731 4.854 4.126 0.701 0.246 0.212 0.391 3.187 2.766 0.285 0.501 0.840 0.351 0.944 0.590 0.729 0.109 0.388 2.661 0.049 1.049 0.137 0.081 1325 chr19 42615300 42621544 + 0 NA intron (NM_001207025, intron 5 of 13) intron (NM_001207025, intron 5 of 13) 18203 NM_001247994 5452 Hs.147381 NM_002698 ENSG00000028277 POU2F2 OCT2|OTF2|Oct-2 POU class 2 homeobox 2 protein-coding 1.831 0.781 1.710 0.183 2.682 1.413 0.369 0.189 0.052 0.101 0.077 1.437 1.067 0.017 0.130 2.200 2.744 0.257 0.184 2.445 2.419 3.344 0.796 0.216 0.237 0.405 0.767 3.263 3.191 2.441 2.133 2.006 2.835 0.415 0.295 2.016 6.303 1.735 1.001 3.219 8.462 0.045 0.889 0.369 1.437 0.232 0.205 1.634 2.403 512 chr11 108090431 108096973 + 0 NA promoter-TSS (NM_001321307) promoter-TSS (NM_001321307) 143 NM_000051 472 Hs.367437 NM_000051 ENSG00000149311 ATM AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1 ATM serine/threonine kinase protein-coding 2.702 2.750 2.199 3.771 3.036 1.468 2.661 1.405 0.114 1.526 0.814 2.756 7.413 2.960 0.162 13.658 13.051 3.783 5.643 8.079 7.390 6.061 3.106 7.613 8.417 5.934 7.096 5.168 7.946 7.065 7.159 6.609 11.149 4.566 4.918 4.318 5.289 3.112 1.575 3.303 2.748 0.817 1.794 2.661 2.756 0.787 2.094 3.666 1.438 1773 chr3 56809766 56822176 + 0 NA intron (NM_001128615, intron 4 of 12) intron (NM_001128615, intron 4 of 12) -6226 NM_001128616 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 1.391 1.379 nan 0.376 0.387 0.245 0.140 0.179 0.090 0.227 0.348 0.722 2.045 0.053 0.100 0.537 0.543 0.422 0.968 0.641 0.743 1.107 0.380 0.383 0.339 0.594 1.228 3.366 2.876 nan 0.315 0.396 0.767 0.685 0.615 0.174 0.286 1.802 1.044 1.578 0.570 0.129 0.013 0.140 0.722 0.205 2.950 0.312 0.102 1662 chr21 16372109 16379674 + 0 NA intron (NM_003489, intron 3 of 3) intron (NM_003489, intron 3 of 3) 61235 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 RIP140 nuclear receptor interacting protein 1 protein-coding 1.487 1.077 nan 0.476 3.585 2.048 0.646 0.019 0.021 1.941 1.051 0.016 0.346 0.073 0.076 0.936 1.048 0.780 0.906 0.747 0.929 5.607 2.052 0.111 0.137 0.147 0.204 0.346 0.386 3.224 2.882 0.744 1.240 6.187 7.553 0.964 2.626 4.076 1.686 0.014 0.023 1.332 0.649 0.646 0.016 0.955 0.776 1626 chr20 49545785 49549011 + 0 NA promoter-TSS (NR_110009) promoter-TSS (NR_110009) -123 NR_110008 101927631 Hs.301898 NR_110007 ENSG00000259456 ADNP-AS1 - ADNP antisense RNA 1 ncRNA 10.624 8.581 9.982 7.104 9.969 5.262 8.308 3.521 0.598 4.905 1.942 9.916 15.768 8.256 0.144 15.862 15.481 12.280 13.602 14.029 12.465 14.677 10.138 21.032 20.573 8.184 9.514 11.193 19.014 13.759 14.219 9.726 15.729 5.055 3.688 14.543 11.645 5.568 3.836 4.300 6.517 1.203 5.211 8.308 9.916 2.228 4.906 4.071 4.150 1038 chr17 27409766 27420353 + 0 NA intron (NM_001346768, intron 37 of 40) MIR|SINE|MIR -12432 NM_004740 9220 Hs.462590 NM_004740 ENSG00000221995 TIAF1 MAJN|SPR210 TGFB1-induced anti-apoptotic factor 1 protein-coding nan nan nan 0.965 0.958 0.379 2.189 0.141 0.045 2.112 1.164 2.015 1.663 0.092 0.105 1.419 2.740 0.319 0.457 1.883 2.106 3.985 1.615 0.461 0.520 0.976 1.313 5.550 5.878 2.192 1.458 1.646 3.041 1.384 1.627 0.788 nan 4.285 1.959 1.197 1.219 0.826 0.218 2.189 2.015 0.448 2.685 3.064 1.705 703 chr13 34441568 34451060 + 0 NA intron (NM_181558, intron 8 of 8) intron (NM_181558, intron 8 of 8) 54108 NM_181558 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 1.078 1.054 3.039 0.195 0.148 0.133 0.194 0.144 0.079 2.242 0.672 5.934 2.147 0.034 0.072 1.031 1.714 0.196 0.327 2.360 3.409 4.961 4.169 0.234 0.226 0.795 1.067 0.431 0.416 3.001 1.951 0.452 1.160 0.730 1.256 0.914 1.843 3.117 1.212 0.129 0.107 0.302 0.566 0.194 5.934 0.184 0.833 0.240 2.707 1848 chr3 177047513 177081347 + 0 NA Intergenic Intergenic 52200 NR_047465 100820709 Hs.518409 NR_047465 ENSG00000203645 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 2.203 2.203 1.658 1.967 3.152 1.736 1.403 2.095 0.330 1.121 0.507 0.824 1.307 0.733 0.137 0.511 0.685 1.829 5.695 0.866 0.891 2.569 1.055 1.125 1.148 1.692 1.956 2.079 1.775 1.773 1.488 0.483 0.785 1.393 1.986 1.171 3.635 1.268 0.818 0.888 0.605 0.377 0.989 1.403 0.824 0.271 1.111 0.647 0.883 1272 chr19 17344286 17366849 + 0 NA intron (NM_005234, intron 1 of 3) CpG 584 NM_005234 2063 Hs.466148 NM_005234 ENSG00000160113 NR2F6 EAR-2|EAR2|ERBAL2 nuclear receptor subfamily 2 group F member 6 protein-coding 2.364 1.675 2.923 1.677 0.999 0.482 0.888 0.685 0.264 0.749 0.410 1.560 1.435 1.683 0.092 1.044 1.989 0.923 1.484 2.211 1.997 2.986 0.752 1.988 1.788 0.867 1.387 4.550 5.483 1.390 1.137 0.612 1.044 1.190 0.911 4.220 11.897 1.765 1.096 1.434 0.797 0.282 0.443 0.888 1.560 0.313 1.080 0.499 3.711 23 chr1 7425599 7451916 + 0 NA intron (NM_015215, intron 5 of 22) L1MB5|LINE|L1 -392572 NM_004781 9341 Hs.66708 NM_004781 ENSG00000049245 VAMP3 CEB vesicle associated membrane protein 3 protein-coding 1.019 nan 0.944 2.572 1.130 0.627 0.727 0.148 0.067 0.426 0.212 0.900 5.662 0.057 0.096 0.580 0.760 0.172 0.329 1.758 1.845 1.486 0.471 0.237 0.212 0.285 nan nan 4.577 nan 0.343 1.484 1.783 0.490 0.594 0.372 0.619 1.241 0.815 5.220 1.622 0.116 0.154 0.727 0.900 0.315 0.964 0.840 0.137 2415 chr8 116430723 116446246 + 0 NA intron (NM_001330599, intron 4 of 5) intron (NM_001330599, intron 4 of 5) 241755 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding nan nan 1.050 0.089 0.252 0.126 0.024 1.124 0.104 0.060 0.073 0.075 0.435 0.042 0.084 0.235 0.145 0.157 0.342 0.365 0.419 nan 0.090 0.676 nan 2.556 nan 0.223 0.284 0.557 0.250 0.096 0.205 2.958 3.480 0.394 0.702 0.545 0.478 0.032 0.097 0.612 0.041 0.024 0.075 0.012 0.052 0.044 0.162 1547 chr2 230270482 230285699 + 0 NA intron (NM_139072, intron 9 of 12) AluSg|SINE|Alu -142033 NM_001100818 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 0.931 nan 0.537 0.100 2.079 1.088 4.083 1.069 0.171 0.602 0.225 1.153 1.710 0.032 0.103 0.318 0.162 1.104 1.922 2.304 2.426 1.953 0.962 0.090 0.120 0.143 0.224 2.442 nan 0.360 0.208 0.099 0.132 0.088 0.158 0.185 0.283 1.229 0.802 1.313 0.972 0.019 0.084 4.083 1.153 0.026 1.668 0.020 0.047 1647 chr20 60807138 60832536 + 0 NA intron (NM_014835, intron 1 of 13) intron (NM_014835, intron 1 of 13) 6296 NM_144498 9885 Hs.473254 NM_014835 ENSG00000130703 OSBPL2 DFNA67|DNFA67|ORP-2|ORP2 oxysterol binding protein like 2 protein-coding 1.051 1.974 1.270 0.643 0.489 0.356 0.821 0.217 0.121 0.321 0.260 0.425 11.313 0.227 0.130 1.323 nan 0.452 0.592 0.963 0.961 1.197 0.514 1.643 1.521 0.708 0.986 1.219 1.613 0.683 0.520 0.652 0.991 0.185 0.255 0.452 0.683 1.258 0.797 0.656 3.670 0.042 0.314 0.821 0.425 0.073 0.962 0.258 0.160 838 chr14 100841120 100893550 + 0 NA intron (NM_024515, intron 2 of 6) intron (NM_024515, intron 2 of 6) 24502 NM_024515 79446 Hs.497600 NM_024515 ENSG00000176473 WDR25 C14orf67 WD repeat domain 25 protein-coding 2.108 1.713 1.165 0.573 0.897 0.493 2.680 0.895 0.199 0.373 0.213 0.326 1.099 0.416 0.134 0.474 0.428 0.600 1.043 0.937 1.072 1.088 0.369 0.390 0.404 0.791 1.407 1.447 1.717 1.627 1.275 0.545 0.725 1.202 1.860 0.552 1.226 1.785 0.993 1.140 0.350 0.193 0.178 2.680 0.326 0.797 1.728 0.177 0.297 714 chr13 53224806 53228356 + 0 NA promoter-TSS (NM_001130912) promoter-TSS (NM_001130912) -245 NM_001130912 10910 Hs.281902 NM_006704 ENSG00000165416 SUGT1 SGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone protein-coding 5.763 6.435 5.151 4.978 5.166 2.518 2.611 3.710 0.137 1.981 1.455 7.188 10.767 4.875 0.136 14.787 14.263 6.694 9.857 13.994 13.738 13.547 10.118 13.377 14.211 5.776 6.960 10.122 15.456 13.135 13.684 11.065 16.335 6.227 7.287 12.678 13.034 1.809 1.064 4.668 5.154 1.065 4.954 2.611 7.188 3.040 1.666 4.894 3.302 1406 chr2 15821308 15836508 + 0 NA Intergenic Intergenic -1998 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LINC01804 - long intergenic non-protein coding RNA 1804 ncRNA 0.646 0.422 0.549 0.231 0.184 0.084 0.085 0.075 0.011 0.054 0.093 0.032 0.353 0.057 0.118 0.357 0.173 0.188 0.344 0.261 0.288 0.376 0.131 0.144 0.136 0.118 0.233 0.214 nan 0.574 0.281 6.056 9.218 0.036 0.053 0.307 nan 0.323 0.354 0.271 0.101 0.024 0.021 0.085 0.032 0.021 0.080 3.527 0.082 2559 chr9 133604330 133609592 + 0 NA intron (NM_007313, intron 1 of 10) L1ME3A|LINE|L1 17693 NM_007313 25 Hs.431048 NM_005157 ENSG00000097007 ABL1 ABL|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl ABL proto-oncogene 1, non-receptor tyrosine kinase protein-coding nan 0.978 4.913 7.048 7.377 3.688 0.258 0.250 0.183 3.577 1.779 4.153 0.690 0.041 0.109 0.307 0.555 0.512 0.793 1.580 1.843 8.391 3.329 0.173 0.274 0.535 0.724 4.757 6.003 1.181 0.958 0.182 0.304 7.131 10.251 0.437 0.907 4.175 1.484 0.074 0.288 2.706 0.660 0.258 4.153 0.239 2.965 0.089 0.258 704 chr13 34565319 34576239 + 0 NA Intergenic AluJo|SINE|Alu 178573 NM_181558 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 0.731 1.037 0.704 0.169 0.122 0.161 0.104 0.157 0.074 1.522 0.536 0.856 0.820 0.020 0.042 2.922 1.855 2.613 1.168 0.818 1.078 6.574 4.663 0.169 0.218 0.549 0.556 1.392 1.458 0.409 0.229 0.691 1.219 0.471 0.319 0.379 0.454 1.060 0.695 0.408 0.204 0.070 0.044 0.104 0.856 0.045 0.559 0.340 0.091 829 chr14 95973290 95992817 + 0 NA Intergenic CpG 16913 NR_003002 677768 Hs.448753 NR_003002 ENSG00000252481 SCARNA13 U93 small Cajal body-specific RNA 13 ncRNA 1.325 1.142 nan 2.743 1.952 1.135 1.265 1.574 0.096 0.237 0.205 2.724 5.900 0.229 0.093 1.657 2.159 0.249 0.307 2.617 2.857 1.360 0.383 0.814 0.710 0.355 0.890 1.589 1.562 0.705 0.453 2.684 3.312 0.364 0.436 0.284 0.515 nan 0.574 3.785 1.478 0.087 0.256 1.265 2.724 0.234 0.031 2.609 0.032 163 chr1 116206737 116222073 + 0 NA intron (NM_138959, intron 4 of 7) intron (NM_138959, intron 4 of 7) 29155 NM_001172412 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding nan 1.833 3.283 0.985 1.431 0.783 0.479 0.211 0.073 0.642 0.508 2.149 1.886 0.106 0.123 0.395 0.296 0.496 1.145 2.267 nan 2.977 0.705 0.642 0.714 0.530 0.861 3.794 3.293 0.449 0.359 0.996 1.558 0.512 0.591 0.380 0.635 3.400 1.801 6.679 2.914 0.031 0.129 0.479 2.149 0.445 1.457 1.187 0.169 1190 chr18 46350363 46370081 + 0 NA intron (NM_014772, intron 10 of 11) intron (NM_014772, intron 10 of 11) 108955 NM_001190823 4092 Hs.465087 NM_005904 ENSG00000101665 SMAD7 CRCS3|MADH7|MADH8 SMAD family member 7 protein-coding nan 0.804 0.956 0.151 0.500 0.325 5.911 0.799 0.114 0.126 0.133 1.343 0.840 0.072 0.066 0.517 0.635 0.358 0.775 1.346 1.616 2.925 0.774 0.191 0.205 0.456 0.654 0.292 0.535 0.518 0.430 0.294 0.728 1.542 1.231 0.353 nan 3.555 1.978 0.973 0.198 0.221 0.213 5.911 1.343 0.414 0.185 0.570 0.183 160 chr1 114297184 114314843 + 0 NA non-coding (NR_130896, exon 8 of 8) non-coding (NR_130896, exon 8 of 8) -3503 NM_001323042 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding nan 1.437 1.306 1.636 1.617 0.734 0.882 1.087 0.256 0.599 0.330 1.232 3.436 1.424 0.150 0.708 0.836 1.042 1.384 2.759 nan 2.683 1.182 1.465 1.500 5.439 6.199 2.739 3.479 7.360 5.627 0.578 0.858 0.732 0.670 2.704 4.931 2.232 1.094 1.347 1.818 0.160 0.889 0.882 1.232 0.857 0.707 0.224 1.082 482 chr11 71931489 71944279 + 0 NA intron (NM_001567, intron 1 of 27) intron (NM_001567, intron 1 of 27) 2002 NM_001567 3636 Hs.523875 NM_001567 ENSG00000165458 INPPL1 OPSMD|SHIP2 inositol polyphosphate phosphatase like 1 protein-coding nan 2.876 3.490 5.455 6.600 3.330 0.862 0.916 0.176 3.859 2.028 4.962 7.871 2.667 0.151 2.685 4.489 1.957 2.498 5.962 6.358 7.112 2.166 4.220 4.191 1.340 1.953 5.174 6.086 0.985 0.875 1.055 2.333 4.349 3.595 0.744 1.375 2.602 1.279 4.508 4.840 2.130 2.123 0.862 4.962 0.343 3.474 1.500 0.316 2263 chr7 56145083 56152195 + 0 NA TTS (NM_001130069) TTS (NM_001130069) 12050 NM_006213 5260 Hs.730821 NM_006213 ENSG00000164776 PHKG1 PHKG phosphorylase kinase catalytic subunit gamma 1 protein-coding nan 2.501 1.873 2.902 1.442 0.835 0.236 0.394 0.247 1.281 1.073 3.704 4.694 0.108 0.137 0.552 0.679 0.557 1.017 4.723 4.256 0.882 0.461 0.657 0.567 0.554 0.895 4.004 3.376 0.229 0.216 0.239 0.233 0.589 0.431 0.387 0.758 1.128 0.620 1.486 0.391 0.228 0.308 0.236 3.704 0.361 7.690 0.042 0.156 240 chr1 168194428 168201049 + 0 NA intron (NM_199344, intron 1 of 7) intron (NM_199344, intron 1 of 7) 2483 NM_199344 375035 Hs.645435 NM_199344 ENSG00000213064 SFT2D2 UNQ512|dJ747L4.C1.2 SFT2 domain containing 2 protein-coding 4.040 nan 4.486 2.611 2.275 1.211 3.291 1.354 0.108 2.031 0.782 3.621 5.814 1.712 0.195 4.121 3.754 5.983 8.219 6.288 nan 4.416 1.888 3.226 3.421 3.257 4.070 4.163 nan 2.342 2.332 8.218 13.927 3.117 3.058 2.728 3.114 2.494 1.587 1.746 3.707 0.505 0.996 3.291 3.621 0.455 1.652 11.526 0.670 434 chr11 44872270 44892598 + 0 NA intron (NM_130783, intron 2 of 8) intron (NM_130783, intron 2 of 8) 89325 NM_001258320 9537 Hs.554791 NM_006034 ENSG00000175274 TP53I11 PIG11 tumor protein p53 inducible protein 11 protein-coding nan 0.798 1.955 0.052 0.304 0.150 0.278 0.229 0.103 0.186 0.199 0.070 0.558 0.107 0.092 1.730 3.704 0.316 0.725 0.652 0.620 0.318 0.130 0.146 0.115 1.079 1.850 0.057 0.147 1.224 1.086 0.519 0.739 0.194 0.350 0.469 nan 1.014 0.718 0.603 0.034 0.066 0.035 0.278 0.070 0.517 0.045 0.117 0.201 2526 chr9 101190233 101207781 + 0 NA intron (NM_005458, intron 7 of 18) intron (NM_005458, intron 7 of 18) -181004 NM_001267571 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 1.007 0.700 0.955 0.076 0.539 0.336 0.189 0.080 0.100 0.081 0.138 0.055 0.330 0.086 0.063 0.168 0.109 0.177 0.205 0.395 0.412 0.449 0.155 0.155 0.148 0.262 0.398 0.297 nan 2.335 2.056 0.158 0.159 0.248 0.297 1.471 5.283 nan 0.424 0.013 0.040 0.032 0.041 0.189 0.055 0.143 0.040 0.034 1.894 1876 chr3 192943667 192961508 + 0 NA Intergenic L2a|LINE|L2 -6330 NM_020386 57110 Hs.36761 NM_020386 ENSG00000127252 HRASLS A-C1|H-REV107|HRASLS1|HRSL1|HSD28 HRAS like suppressor protein-coding nan 1.436 1.648 0.771 0.674 0.261 0.573 0.147 0.127 0.441 0.348 0.124 nan 0.043 0.069 0.714 0.784 0.948 0.970 2.120 2.050 0.470 0.237 1.836 1.856 0.904 1.244 1.090 1.502 4.878 5.925 0.503 0.816 0.228 0.203 2.764 6.401 1.026 0.840 0.196 1.071 0.112 3.732 0.573 0.124 0.890 0.171 0.384 2.126 1296 chr19 36543770 36548180 + 0 NA promoter-TSS (NM_152658) promoter-TSS (NM_152658) 192 NM_173636 284403 Hs.116244 NM_173636 ENSG00000075702 WDR62 C19orf14|MCPH2 WD repeat domain 62 protein-coding 6.063 3.299 3.633 9.298 4.538 2.386 3.253 2.391 0.515 1.633 0.959 4.653 23.566 4.895 0.186 3.455 3.216 5.120 7.510 6.972 5.338 8.314 4.441 13.399 13.897 5.003 5.896 6.243 11.643 nan 5.727 3.526 5.185 4.963 7.207 4.522 6.265 3.943 1.998 5.216 5.564 1.466 1.545 3.253 4.653 1.513 2.011 2.655 2.196 18 chr1 6660198 6676134 + 0 NA Intergenic Intergenic -5208 NM_014851 9903 Hs.7764 NM_014851 ENSG00000162413 KLHL21 - kelch like family member 21 protein-coding 2.683 nan 3.236 4.779 1.468 0.804 0.835 2.928 0.545 0.866 0.463 1.150 3.662 4.040 0.183 1.797 2.468 3.922 6.383 3.643 3.248 1.692 0.465 3.881 3.895 1.840 nan nan 5.444 nan 2.081 2.010 3.260 0.741 0.760 1.889 2.230 1.342 0.939 1.142 1.762 0.126 0.602 0.835 1.150 0.703 1.495 1.390 0.675 1331 chr19 44122243 44125375 + 0 NA 5' UTR (NM_182498, exon 1 of 3) 5' UTR (NM_182498, exon 1 of 3) 205 NM_182498 126299 Hs.99093 NM_182498 ENSG00000131116 ZNF428 C19orf37|Zfp428 zinc finger protein 428 protein-coding 7.843 4.347 7.729 6.569 8.499 4.781 5.925 2.014 0.421 2.364 1.233 5.901 7.700 4.365 0.180 12.223 13.776 13.708 15.543 13.182 11.138 15.037 6.004 12.859 12.915 6.905 8.871 9.787 12.711 11.284 12.538 8.361 14.462 8.099 7.579 8.070 9.487 5.584 2.933 7.184 6.836 1.404 2.997 5.925 5.901 2.535 3.281 4.864 2.405 1965 chr5 38527974 38559302 + 0 NA intron (NM_002310, intron 1 of 19) MIR|SINE|MIR 13110 NM_001127671 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS leukemia inhibitory factor receptor alpha protein-coding 1.222 2.519 nan 6.526 2.923 1.400 1.232 0.424 0.212 0.927 0.477 2.641 7.539 0.464 0.126 0.532 0.476 0.440 0.623 2.725 2.924 0.188 0.094 1.351 1.311 0.286 0.510 6.053 7.476 3.378 2.923 0.226 0.418 0.157 0.161 0.273 0.474 3.846 1.909 2.639 3.450 0.044 0.448 1.232 2.641 0.625 1.763 0.066 0.082 1753 chr3 18455902 18472899 + 0 NA intron (NM_001322874, intron 1 of 10) intron (NM_001322874, intron 1 of 10) 2429 NM_001195470 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding nan 1.318 2.029 0.883 1.520 0.604 0.399 0.189 0.047 1.034 0.525 1.180 2.879 0.058 0.061 2.534 2.567 1.001 1.235 3.129 2.611 1.747 0.544 1.558 1.651 0.104 0.168 1.466 1.562 1.197 1.362 3.103 5.400 1.600 1.554 0.652 1.130 1.424 0.795 0.036 1.074 0.499 2.716 0.399 1.180 0.399 1.071 3.115 0.524 324 chr1 246371336 246385418 + 0 NA intron (NM_001167740, intron 5 of 11) intron (NM_001167740, intron 5 of 11) 202337 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding nan 1.357 nan 8.039 0.783 0.274 0.344 0.186 0.159 2.423 1.632 3.310 14.815 0.085 0.139 0.986 1.266 0.316 0.637 5.679 5.745 10.599 3.101 0.448 0.460 0.513 0.735 3.736 4.409 0.472 0.259 0.506 0.768 1.789 1.647 0.447 0.709 1.799 1.075 4.265 0.069 0.256 0.085 0.344 3.310 0.062 3.277 0.317 0.134 1902 chr4 77350498 77392158 + 0 NA intron (NM_020859, intron 1 of 10) intron (NM_020859, intron 1 of 10) 15075 NM_020859 57619 Hs.683808 NM_020859 ENSG00000138771 SHROOM3 APXL3|MSTP013|SHRM|ShrmL shroom family member 3 protein-coding 0.655 0.609 0.488 0.159 0.587 0.273 0.485 0.730 0.139 0.056 0.098 0.508 0.281 4.488 0.176 0.273 0.167 0.292 0.561 0.474 0.480 0.617 0.195 0.409 0.387 0.217 0.392 0.449 0.411 0.312 0.154 0.118 0.164 0.109 0.123 0.158 0.319 0.310 0.309 0.036 0.144 0.020 0.069 0.485 0.508 0.019 0.034 0.035 0.039 1940 chr5 2684440 2714584 + 0 NA Intergenic Intergenic 52257 NM_033267 153572 Hs.282089 NM_033267 ENSG00000170561 IRX2 IRXA2 iroquois homeobox 2 protein-coding 0.342 0.669 0.777 0.118 0.435 0.266 0.239 0.163 0.096 0.073 0.131 2.602 0.471 0.029 0.099 0.313 0.141 0.305 nan 0.882 0.978 0.092 0.060 0.045 0.035 0.156 0.304 nan 0.154 nan 0.319 0.150 0.197 0.053 0.093 0.056 0.124 0.177 nan 0.791 0.262 0.028 0.082 0.239 2.602 0.071 0.032 0.039 0.008 1881 chr4 6987061 7007772 + 0 NA intron (NM_001330638, intron 3 of 12) AluSc8|SINE|Alu 8181 NM_001286805 57533 Hs.518611 NM_020773 ENSG00000132405 TBC1D14 - TBC1 domain family member 14 protein-coding 0.992 0.754 nan 1.119 0.365 0.062 0.418 0.438 0.157 0.531 0.365 0.563 1.251 0.413 0.068 1.840 1.624 3.205 7.776 0.788 0.831 nan 0.539 1.374 1.435 0.396 0.745 1.050 1.653 1.396 1.406 0.877 1.442 0.306 0.411 0.782 1.026 nan 0.860 0.394 1.082 0.050 0.379 0.418 0.563 0.145 0.211 0.566 0.339 1899 chr4 68264106 68266863 + 0 NA Intergenic ALR/Alpha|Satellite|centr 22234 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA nan 30.001 30.376 12.359 17.751 9.511 10.467 8.860 29.867 8.759 16.369 6.950 16.949 5.829 12.837 25.444 15.543 22.075 29.818 22.055 24.645 13.731 11.357 19.086 20.262 15.438 18.354 18.142 15.275 26.868 12.440 15.167 21.273 5.985 9.273 14.756 16.371 10.590 13.275 2.320 4.959 2.487 3.983 10.467 6.950 1.688 3.818 3.685 3.367 2168 chr6 118649490 118659258 + 0 NA Intergenic Intergenic -168162 NR_002730 23629 Hs.648050 NR_002730 BRD7P3 BP75 bromodomain containing 7 pseudogene 3 pseudo nan 1.108 nan 0.826 0.227 0.082 0.509 0.084 0.065 0.241 0.185 0.135 3.513 0.044 0.170 0.457 0.247 0.120 0.183 1.206 nan nan 0.151 0.360 0.293 0.335 nan 3.089 2.142 0.517 0.316 0.150 0.183 0.248 0.309 0.123 nan 1.107 0.512 5.583 1.354 0.059 0.041 0.509 0.135 0.030 0.353 0.021 0.038 2346 chr8 29194263 29217399 + 0 NA 5' UTR (NM_057158, exon 1 of 5) 5' UTR (NM_057158, exon 1 of 5) 491 NM_057158 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding nan 2.516 nan 1.443 3.242 1.966 0.996 0.213 0.083 0.224 0.112 2.095 6.140 0.085 0.107 1.133 1.253 2.127 3.597 nan 3.226 nan 1.992 0.387 0.401 0.170 0.310 3.341 3.830 2.869 2.505 0.285 0.357 2.017 1.899 0.487 1.068 nan nan 1.864 0.123 0.218 0.114 0.996 2.095 0.310 2.965 0.056 0.251 514 chr11 111131952 111209578 + 0 NA promoter-TSS (NM_001302648) promoter-TSS (NM_001302648) -4 NM_001302648 399948 Hs.729225 NM_207429 COLCA1 C11orf92|CASC12|LOH11CR1F colorectal cancer associated 1 protein-coding 1.007 2.133 1.380 0.317 2.770 1.438 0.323 0.377 0.083 0.633 0.520 1.889 3.329 0.065 0.114 3.367 nan 9.254 11.892 2.040 2.351 1.320 0.339 1.392 1.397 2.599 nan 1.640 1.370 0.876 0.556 2.045 3.432 2.840 3.469 0.302 0.871 1.210 0.781 2.429 0.232 1.204 0.299 0.323 1.889 0.742 0.787 2.292 0.170 1187 chr18 45642537 45670478 + 0 NA intron (NM_001318841, intron 3 of 4) intron (NM_001318841, intron 3 of 4) 7173 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding nan 2.599 1.056 1.507 1.116 0.515 1.035 0.045 0.080 0.124 0.091 3.968 3.802 0.031 0.070 0.386 0.396 2.029 1.940 2.659 2.920 2.281 0.702 0.198 0.258 0.276 0.505 1.875 1.966 1.253 1.514 0.263 0.295 1.459 1.442 0.417 nan 2.759 1.663 3.794 3.137 0.338 0.082 1.035 3.968 0.132 0.247 0.039 0.482 2522 chr9 95086554 95089018 + 0 NA promoter-TSS (NM_001330722) promoter-TSS (NM_001330722) 36 NM_001286969 401541 Hs.713775 NM_001012267 ENSG00000188312 CENPP CENP-P centromere protein P protein-coding 5.248 4.368 6.423 11.181 6.990 3.114 5.525 4.021 0.132 3.287 1.448 5.760 8.125 3.904 0.177 8.166 6.813 9.926 14.159 10.463 12.533 7.616 5.485 13.883 16.143 3.796 4.739 11.044 18.850 21.002 19.101 7.300 9.361 12.113 15.847 8.982 6.974 6.850 3.523 1.667 4.298 1.902 2.143 5.525 5.760 2.286 2.507 2.119 2.414 2259 chr7 50644616 50669885 + 0 NA TTS (NM_005311) TTS (NM_005311) -24096 NM_001082971 1644 Hs.359698 NM_000790 ENSG00000132437 DDC AADC dopa decarboxylase protein-coding nan 1.445 1.696 0.198 0.561 0.287 1.029 0.095 0.147 0.347 0.336 0.644 1.519 0.060 0.136 0.473 0.261 0.939 2.641 0.768 0.945 4.917 1.334 0.093 0.112 0.639 0.950 1.639 1.542 1.135 1.078 0.129 0.278 0.908 0.866 1.043 2.456 2.375 1.305 0.404 0.764 0.218 0.565 1.029 0.644 0.240 0.384 0.043 0.639 98 chr1 40767952 40774540 + 0 NA intron (NM_001852, intron 21 of 31) MIR3|SINE|MIR 11693 NM_001852 1298 Hs.418012 NM_001852 ENSG00000049089 COL9A2 DJ39G22.4|EDM2|MED|STL5 collagen type IX alpha 2 chain protein-coding 10.792 0.680 nan 1.618 0.790 0.319 0.481 0.230 0.074 0.260 0.251 0.255 0.568 0.166 0.070 0.404 0.494 0.284 0.427 1.797 1.361 0.370 0.205 0.600 0.531 0.515 nan nan 1.702 0.880 1.108 0.367 nan 0.395 0.519 0.369 0.728 2.046 1.362 0.194 0.108 0.029 15.656 0.481 0.255 0.220 0.097 0.076 0.121 1635 chr20 52440555 52456805 + 0 NA Intergenic Intergenic 43568 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 1.066 1.983 0.757 0.228 0.424 0.197 1.508 4.723 0.482 0.087 0.082 0.052 0.451 7.227 0.230 0.483 nan 1.102 5.002 0.594 0.578 0.136 0.065 0.279 0.231 0.789 1.203 0.622 0.754 0.599 0.285 0.182 0.402 0.046 0.056 0.431 1.080 0.249 0.337 0.438 0.219 0.006 0.083 1.508 0.052 0.347 0.043 0.146 0.177 2207 chr7 764946 778245 + 0 NA intron (NM_017802, intron 2 of 12) intron (NM_017802, intron 2 of 12) -4282 NM_001164759 5575 Hs.520851 NM_002735 ENSG00000188191 PRKAR1B PRKAR1 protein kinase cAMP-dependent type I regulatory subunit beta protein-coding 2.093 1.327 3.313 2.370 0.581 0.444 1.220 0.315 0.180 1.193 0.579 2.066 nan 1.154 0.209 2.210 1.645 0.899 nan 4.147 4.509 nan 0.703 3.826 3.914 1.130 1.703 nan 1.656 1.175 1.457 0.705 1.135 1.114 0.932 1.164 1.243 2.925 1.401 1.182 0.500 0.126 0.424 1.220 2.066 0.766 2.808 0.202 0.445 2025 chr5 142773669 142786568 + 0 NA exon (NM_000176, exon 2 of 9) exon (NM_000176, exon 2 of 9) 3136 NM_001204261 2908 Hs.122926 NM_000176 ENSG00000113580 NR3C1 GCCR|GCR|GCRST|GR|GRL nuclear receptor subfamily 3 group C member 1 protein-coding nan 2.313 2.383 2.069 1.390 0.823 1.117 2.652 0.225 0.753 0.267 1.663 12.351 0.866 0.085 0.187 0.091 0.548 0.759 4.222 3.754 2.584 1.335 3.672 3.520 5.362 6.359 4.879 6.085 5.201 5.591 1.845 1.968 2.745 2.707 2.262 3.832 1.640 0.884 2.124 4.691 0.913 1.494 1.117 1.663 1.268 4.282 0.762 0.903 882 chr15 66979968 67001109 + 0 NA Intergenic L2a|LINE|L2 -4136 NR_027654 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 1.344 1.064 nan 0.341 0.651 0.341 1.138 0.928 0.258 0.266 0.123 1.345 2.122 1.205 0.093 0.329 0.293 3.645 6.446 0.927 0.917 nan 0.109 0.228 0.300 0.951 1.505 0.368 0.603 2.275 2.259 0.301 0.519 1.257 1.024 1.069 1.623 0.586 0.474 0.355 0.358 0.519 1.204 1.138 1.345 0.592 0.386 0.233 0.695 916 chr16 754359 761631 + 0 NA Intergenic Intergenic -2170 NM_153350 146330 Hs.513244 NM_153350 ENSG00000127585 FBXL16 C16orf22|Fbl16|c380A1.1 F-box and leucine rich repeat protein 16 protein-coding 4.046 nan 1.329 1.470 1.727 0.761 6.767 0.048 0.612 0.241 2.626 5.175 0.840 0.033 2.620 4.237 0.091 0.149 4.000 3.503 6.792 2.791 0.265 0.241 1.302 nan 0.656 1.126 3.228 3.791 0.735 1.678 4.368 3.799 1.409 1.726 0.961 0.613 3.028 5.798 1.522 0.677 6.767 2.626 2.009 1.333 0.790 0.239 1347 chr19 48268977 48283961 + 0 NA Intergenic L2a|LINE|L2 -4372 NR_132382 106144593 Hs.421907 NR_132382 ENSG00000269656 GLTSCR2-AS1 - GLTSCR2 antisense RNA 1 ncRNA 1.536 2.586 1.477 2.498 5.580 3.050 1.236 0.452 0.237 1.398 0.747 3.959 3.840 1.955 0.150 1.145 1.567 1.317 1.981 3.095 3.867 5.545 3.467 2.204 2.313 0.822 1.325 4.759 6.892 1.913 1.610 1.368 1.896 1.918 1.615 1.365 2.440 3.167 1.771 1.780 1.761 0.310 0.217 1.236 3.959 0.355 0.834 0.399 0.926 910 chr16 277875 286550 + 0 NA Intergenic AluYc|SINE|Alu -2333 NM_032039 83986 Hs.513225 NM_032039 ENSG00000167930 FAM234A C16orf9|ITFG3|gs19 family with sequence similarity 234 member A protein-coding 3.349 nan 2.247 4.218 3.654 1.938 3.097 1.508 0.467 1.513 0.679 3.150 7.675 2.584 0.069 4.250 3.736 1.975 3.315 4.804 4.430 nan 4.850 7.559 8.456 2.912 nan 4.557 7.153 4.380 4.293 1.519 2.540 4.699 4.544 3.900 3.588 2.883 1.669 2.320 4.692 0.691 1.182 3.097 3.150 1.062 2.167 0.647 0.871 2101 chr6 31506258 31511458 + 0 NA promoter-TSS (NR_003065) promoter-TSS (NR_003065) 97 NR_003065 692199 NR_003065 ENSG00000265236 SNORD84 U84 small nucleolar RNA, C/D box 84 snoRNA nan 4.192 5.137 7.528 8.044 5.062 8.399 3.933 0.589 2.889 1.577 8.779 13.279 5.411 0.293 10.781 8.748 10.205 nan nan 12.893 9.847 7.982 15.836 17.029 6.208 7.270 13.771 19.154 12.196 11.255 8.368 12.604 8.565 10.508 8.618 9.174 5.137 2.117 4.844 4.460 1.504 3.974 8.399 8.779 1.645 3.715 3.774 3.739 1911 chr4 105508538 105517692 + 0 NA intron (NR_125926, intron 1 of 9) intron (NR_125926, intron 1 of 9) -97057 NR_132741 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 1.306 nan nan 3.964 9.238 4.443 0.432 0.090 0.036 2.444 1.495 4.277 10.309 0.155 0.089 0.338 0.281 0.193 nan 3.420 2.889 2.790 1.385 0.140 0.120 0.738 nan 3.414 5.052 0.704 0.459 0.112 0.203 5.748 4.624 1.914 nan 3.138 1.756 0.008 1.229 1.441 0.226 0.432 4.277 0.010 0.578 0.048 0.973 1641 chr20 56242296 56261665 + 0 NA intron (NM_199171, intron 1 of 3) L2a|LINE|L2 13700 NM_001255976 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 1.687 3.570 0.730 0.068 1.843 0.879 0.540 0.132 0.091 0.428 0.175 1.949 0.465 0.115 0.124 1.356 nan 0.570 0.628 3.914 2.881 0.692 0.214 0.140 0.143 0.821 1.376 0.139 0.146 1.350 1.340 0.530 0.765 0.297 0.274 0.978 1.640 1.157 0.884 1.660 0.513 0.069 0.103 0.540 1.949 0.643 2.940 0.240 0.384 659 chr12 107366692 107373783 + 0 NA TTS (NM_025198) TTS (NM_025198) 10707 NM_025198 80298 Hs.5009 NM_025198 ENSG00000120832 MTERF2 MTERFD3|mTERFL mitochondrial transcription termination factor 2 protein-coding 1.173 0.855 nan 0.535 0.355 0.277 0.322 1.024 0.182 0.312 0.137 0.202 0.599 0.123 0.122 0.375 0.264 0.422 0.734 0.472 0.683 1.530 0.578 0.446 0.386 1.974 2.919 2.120 2.049 0.512 0.215 0.167 0.321 4.880 7.582 0.397 0.626 1.447 0.896 0.101 0.122 1.612 0.101 0.322 0.202 0.054 1.351 0.122 0.122 2582 chrX 10689099 10738676 + 0 NA intron (NM_033290, intron 1 of 9) intron (NM_033290, intron 1 of 9) -68108 NM_001098624 4281 Hs.27695 NM_000381 ENSG00000101871 MID1 BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY midline 1 protein-coding 0.914 nan 0.672 0.240 0.422 0.256 0.686 0.605 0.172 0.157 0.173 0.227 0.903 3.149 0.093 0.124 0.080 0.417 1.128 0.760 0.694 1.305 0.719 0.418 0.382 0.545 0.739 0.647 0.913 0.632 0.529 0.168 0.240 0.343 0.414 0.340 0.713 0.661 0.490 0.147 0.214 0.069 0.415 0.686 0.227 0.098 0.128 0.111 0.165 1086 chr17 46047204 46102669 + 0 NA Intergenic AluSq2|SINE|Alu 26614 NM_001278217 80279 Hs.20157 NM_025197 ENSG00000108465 CDK5RAP3 C53|HSF-27|IC53|LZAP|MST016|OK/SW-cl.114|PP1553 CDK5 regulatory subunit associated protein 3 protein-coding 3.384 1.958 nan 0.725 3.407 1.678 3.210 0.328 0.195 0.775 0.511 1.254 3.021 0.296 0.105 1.394 1.751 0.589 1.087 1.854 nan 3.652 0.989 1.119 1.261 2.282 3.133 2.489 nan 4.628 3.735 0.809 1.195 4.420 4.970 2.971 9.200 2.175 1.143 1.507 1.497 2.182 3.057 3.210 1.254 1.455 0.603 0.561 4.171 1785 chr3 114111722 114141429 + 0 NA intron (NM_001164343, intron 8 of 11) intron (NM_001164343, intron 8 of 11) -24086 NM_001164342 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 1.113 nan 1.006 0.176 0.780 0.497 0.456 1.170 0.132 0.360 0.316 3.191 1.070 0.019 0.083 1.840 2.549 3.160 4.324 2.514 nan 2.565 0.999 0.287 0.298 nan 2.735 0.297 0.339 0.678 0.335 1.536 2.134 0.146 0.205 0.508 1.056 1.488 1.114 0.325 1.104 0.026 0.107 0.456 3.191 0.094 0.178 1.662 0.391 636 chr12 66205913 66359179 + 0 NA intron (NM_001300918, intron 3 of 4) AluY|SINE|Alu -6599 NM_001292023 100129940 Hs.685856 NM_001292023 ENSG00000197301 LOC100129940 - uncharacterized LOC100129940 protein-coding 0.671 0.575 0.568 0.117 0.184 0.083 0.093 0.299 0.085 0.072 0.111 0.045 0.259 6.566 0.187 0.284 0.225 1.013 2.789 0.359 nan 0.122 0.067 0.145 0.136 0.187 0.299 0.317 0.371 0.469 0.313 0.169 0.324 0.037 0.045 0.527 0.975 0.231 0.370 0.013 0.061 0.014 0.019 0.093 0.045 0.015 0.030 0.091 0.340 72 chr1 32477964 32481829 + 0 NA non-coding (NR_073499, exon 1 of 11) non-coding (NR_073499, exon 1 of 11) 601 NM_001271878 10657 Hs.445893 NM_006559 ENSG00000121774 KHDRBS1 Sam68|p62|p68 KH RNA binding domain containing, signal transduction associated 1 protein-coding 8.568 nan 6.547 14.778 6.581 3.710 5.254 3.951 0.208 4.898 2.417 13.970 15.890 8.230 0.261 7.081 7.054 12.146 14.517 17.900 14.681 7.417 3.155 18.145 18.800 6.369 7.816 6.349 10.196 nan 8.081 3.825 8.421 3.501 4.361 8.336 8.966 4.605 nan 8.853 6.256 1.063 4.066 5.254 13.970 2.155 4.023 2.468 3.146 206 chr1 155930529 155959483 + 0 NA intron (NM_001162384, intron 1 of 21) intron (NM_001162384, intron 1 of 21) 2960 NM_004723 9181 Hs.743352 NM_004723 ENSG00000116584 ARHGEF2 GEF|GEF-H1|GEFH1|LFP40|P40 Rho/Rac guanine nucleotide exchange factor 2 protein-coding nan nan 2.132 1.657 2.006 1.042 2.591 2.114 0.272 1.673 0.736 3.940 15.846 0.863 0.112 3.321 4.930 2.769 2.724 6.565 nan 2.055 0.805 3.003 3.223 1.789 2.674 2.852 2.797 2.385 2.160 4.435 5.876 1.575 1.837 1.941 5.599 1.603 0.759 2.031 1.233 0.736 0.950 2.591 3.940 0.594 1.455 2.886 1.307 755 chr14 23444409 23455945 + 0 NA intron (NM_001289097, intron 1 of 1) CpG 1674 NM_032876 84962 Hs.655832 NM_032876 ENSG00000129474 AJUBA JUB ajuba LIM protein protein-coding nan 0.693 1.276 0.448 0.530 0.348 0.503 2.668 0.507 0.081 0.109 0.384 1.692 6.805 0.188 2.068 2.668 7.803 7.758 0.634 0.776 1.157 0.262 0.518 0.590 1.927 1.997 0.787 nan 0.932 0.598 1.013 1.624 0.329 0.488 0.463 1.432 0.868 0.558 2.258 0.169 0.065 0.130 0.503 0.384 0.673 0.598 0.825 0.204 609 chr12 53885017 53896517 + 0 NA intron (NM_006301, intron 1 of 14) MIRb|SINE|MIR 2677 NM_006301 7786 Hs.713539 NM_006301 ENSG00000139625 MAP3K12 DLK|MEKK12|MUK|ZPK|ZPKP1 mitogen-activated protein kinase kinase kinase 12 protein-coding nan 2.675 1.794 2.129 2.776 1.412 3.153 1.589 0.295 1.254 0.604 2.658 8.245 3.210 0.103 nan 4.475 2.889 4.068 5.328 nan 7.584 3.494 3.523 3.674 2.263 nan 5.140 nan 4.373 4.345 1.093 1.983 4.466 5.218 2.381 3.708 3.452 1.638 1.014 3.071 1.040 0.879 3.153 2.658 1.149 1.871 0.802 0.827 2062 chr6 7049745 7053829 + 0 NA Intergenic CpG -56043 NM_001168344 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 3.292 2.418 2.988 3.006 1.833 0.901 0.898 0.129 0.096 0.884 0.379 9.713 1.490 0.424 0.176 0.599 1.274 0.284 0.463 1.934 1.568 6.755 1.959 5.235 5.620 0.292 0.488 6.880 9.006 1.292 1.546 0.466 0.792 1.697 1.134 1.385 2.148 1.355 1.118 0.423 0.325 0.282 4.018 0.898 9.713 0.569 1.081 0.144 0.880 639 chr12 69750931 69755666 + 0 NA promoter-TSS (NM_006530) promoter-TSS (NM_006530) -192 NM_001300950 8089 Hs.4029 NM_006530 ENSG00000127337 YEATS4 4930573H17Rik|B230215M10Rik|GAS41|NUBI-1|YAF9 YEATS domain containing 4 protein-coding 4.079 3.845 2.085 4.760 5.406 3.485 4.334 1.630 0.406 3.816 2.215 4.775 10.087 2.096 0.073 5.520 4.285 4.821 7.752 10.624 nan 11.740 7.976 16.071 17.439 4.972 5.409 9.993 14.796 7.458 7.138 3.498 5.332 5.196 6.911 7.527 4.307 5.394 2.496 2.476 4.456 1.185 1.776 4.334 4.775 0.931 2.383 1.416 1.403 968 chr16 49729148 49738739 + 0 NA intron (NM_001271620, intron 3 of 7) intron (NM_001271620, intron 3 of 7) -35801 NM_001330533 23090 Hs.443715 NM_015069 ENSG00000102935 ZNF423 Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ zinc finger protein 423 protein-coding 1.537 3.042 1.076 0.045 1.024 0.413 11.800 0.071 0.017 0.083 0.017 0.133 0.393 0.092 0.072 0.193 0.210 0.092 0.146 1.725 1.724 4.959 1.778 0.121 0.063 0.734 1.116 0.199 0.316 1.993 1.827 0.123 0.193 2.697 2.840 0.727 1.292 2.056 0.957 0.006 0.065 0.863 0.365 11.800 0.133 1.644 0.021 0.128 1184 chr18 45100593 45134118 + 0 NA Intergenic MSTB|LTR|ERVL-MaLR 210488 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA nan 0.834 0.874 0.063 2.646 1.431 4.984 0.058 0.048 0.070 0.066 0.472 0.667 0.046 0.056 0.349 0.237 0.301 0.387 1.241 1.341 1.856 0.661 0.124 0.126 0.112 0.215 0.178 0.275 0.416 0.318 0.112 0.142 1.070 1.075 0.292 nan 0.933 0.827 0.043 0.173 0.375 0.028 4.984 0.472 0.009 0.015 0.030 0.296 1350 chr19 48342395 48372481 + 0 NA Intergenic MER90a|LTR|ERV1 32216 NM_003167 6822 Hs.515835 NM_003167 ENSG00000105398 SULT2A1 DHEA-ST|DHEAS|HST|ST2|ST2A1|ST2A3|STD|hSTa sulfotransferase family 2A member 1 protein-coding 1.029 0.757 0.997 0.070 0.339 0.186 0.146 0.083 0.187 0.053 0.088 0.112 0.193 0.189 0.113 0.169 0.171 0.149 0.183 0.276 0.305 0.304 0.145 0.247 0.225 0.176 0.329 0.164 0.203 1.304 0.775 0.142 0.169 0.080 0.117 1.480 6.205 0.330 0.450 0.020 0.091 0.029 0.013 0.146 0.112 0.026 0.030 0.026 2.468 1033 chr17 27050866 27056742 + 0 NA promoter-TSS (NM_138463) promoter-TSS (NM_138463) 145 NM_001160407 116238 Hs.499952 NM_138463 ENSG00000160606 TLCD1 - TLC domain containing 1 protein-coding nan nan nan 3.736 8.339 3.800 2.968 2.690 0.471 1.229 0.643 3.251 16.807 5.786 0.194 6.484 7.692 4.652 8.323 4.326 3.391 8.233 2.558 9.750 10.521 2.845 4.470 14.200 16.983 11.567 14.125 2.386 5.399 5.094 5.402 6.192 9.787 2.857 1.602 6.089 6.199 1.535 4.346 2.968 3.251 1.336 4.405 4.276 5.111 2340 chr8 20333064 20347780 + 0 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 207138 NR_047509 100874051 Hs.385799 NR_047509 ENSG00000253733 LZTS1-AS1 - LZTS1 antisense RNA 1 ncRNA nan 0.722 nan 0.059 0.221 0.033 0.296 0.079 0.055 0.117 0.142 0.065 0.179 0.052 0.102 0.441 0.394 0.113 0.117 nan 0.570 nan 1.548 0.066 0.104 0.207 0.348 0.230 0.235 0.429 0.162 0.135 0.122 0.589 0.573 0.194 0.227 nan nan 0.057 0.030 0.085 0.038 0.296 0.065 0.076 0.040 0.041 2359 chr8 49819643 49838543 + 0 NA Intergenic Intergenic 4906 NM_003068 6591 Hs.360174 NM_003068 ENSG00000019549 SNAI2 SLUG|SLUGH|SLUGH1|SNAIL2|WS2D snail family transcriptional repressor 2 protein-coding 1.721 nan 2.109 0.085 0.193 0.084 0.413 0.803 0.111 0.829 0.400 0.044 1.319 0.027 0.134 0.411 0.334 0.706 1.555 1.535 1.171 2.378 0.485 0.432 0.446 0.500 0.720 0.109 0.113 0.816 0.603 0.143 0.187 2.574 3.757 0.370 0.605 2.211 1.465 0.003 0.137 0.510 0.117 0.413 0.044 0.221 2.545 0.031 0.248 1099 chr17 56590352 56597869 + 0 NA intron (NM_004687, intron 1 of 18) intron (NM_004687, intron 1 of 18) 1141 NM_004687 9110 Hs.514373 NM_004687 ENSG00000108389 MTMR4 FYVE-DSP2|ZFYVE11 myotubularin related protein 4 protein-coding 4.943 3.719 3.224 5.186 5.731 3.238 3.506 2.105 0.407 2.462 1.445 3.766 11.528 2.838 0.080 6.206 6.732 4.421 6.859 8.371 5.837 7.447 3.096 nan 12.320 2.416 3.207 nan 14.727 6.351 8.237 2.575 5.207 5.315 4.852 3.682 4.723 2.926 1.366 1.188 4.700 0.544 3.270 3.506 3.766 1.634 2.173 2.273 1.394 306 chr1 231813275 231836453 + 0 NA intron (NM_001164556, intron 1 of 4) intron (NM_001164556, intron 1 of 4) 62303 NM_001164538 27185 Hs.13318 NM_018662 ENSG00000162946 DISC1 C1orf136|SCZD9 disrupted in schizophrenia 1 protein-coding 1.755 3.230 3.496 2.976 1.530 0.834 1.644 0.220 0.083 0.392 0.224 0.294 6.613 0.046 0.091 0.420 0.213 2.062 2.642 1.680 1.546 nan 3.095 0.222 0.278 0.664 0.979 nan 1.201 1.458 1.825 0.112 0.137 0.563 0.821 0.493 1.061 nan 0.735 0.283 0.158 0.119 2.354 1.644 0.294 0.826 0.729 0.017 0.165 904 chr15 93439407 93474393 + 0 NA intron (NM_001042572, intron 2 of 12) AluJr|SINE|Alu 9271 NR_036136 100422995 NR_036136 ENSG00000173575 MIR3175 mir-3175 microRNA 3175 ncRNA nan nan nan 1.329 1.953 0.988 1.072 1.851 0.185 1.226 0.813 1.462 3.328 1.578 0.121 2.227 2.236 3.185 5.497 2.584 2.512 nan 2.525 7.903 8.013 2.568 3.073 3.184 4.621 nan 4.077 2.196 3.122 1.853 2.529 2.600 nan 1.361 0.821 0.856 1.786 0.248 1.466 1.072 1.462 0.269 0.705 1.920 0.633 2120 chr6 38133044 38167157 + 0 NA intron (NM_001099272, intron 10 of 10) intron (NM_001099272, intron 10 of 10) -299272 NR_144472 101929425 Hs.665280 NR_144472 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA nan 1.260 nan 0.256 1.011 0.572 2.019 0.114 0.075 0.309 0.308 3.518 0.873 0.098 0.118 0.592 0.607 0.328 nan nan 3.932 4.609 1.270 0.386 0.400 0.432 0.779 0.665 1.130 0.463 0.346 0.339 0.516 1.168 0.979 0.480 0.983 1.169 0.877 0.606 1.043 0.573 0.215 2.019 3.518 0.137 0.078 0.218 0.423 409 chr11 12688752 12704565 + 0 NA intron (NM_021961, intron 1 of 12) CpG 689 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 1.733 nan 3.747 2.896 1.436 0.949 1.578 1.804 0.192 1.786 0.938 5.167 6.036 1.337 0.099 nan 2.796 1.769 2.901 6.232 5.859 2.558 0.976 3.398 3.267 2.476 nan 1.820 3.462 1.830 1.690 0.841 1.762 3.125 3.442 1.669 2.673 2.316 nan 4.335 2.205 0.886 1.196 1.578 5.167 0.264 0.627 0.770 0.486 2201 chr6 162147503 162159763 + 0 NA intron (NM_013987, intron 6 of 10) intron (NM_013987, intron 6 of 10) 261624 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 0.782 nan 0.656 0.575 0.331 0.183 0.386 0.127 0.104 0.205 0.122 0.390 0.255 0.036 0.130 0.443 0.316 0.181 0.218 0.585 0.635 5.934 2.253 0.200 0.179 0.077 0.137 1.328 0.444 nan 0.182 0.129 0.215 1.660 1.684 0.111 0.222 0.370 0.331 0.013 0.051 0.274 0.007 0.386 0.390 0.050 0.018 0.022 1719 chr22 35695062 35711274 + 0 NA intron (NR_024194, intron 1 of 14) MER113B|DNA|hAT-Charlie 7371 NM_001135730 10043 Hs.474705 NM_005488 ENSG00000100284 TOM1 - target of myb1 membrane trafficking protein protein-coding nan 2.229 1.132 0.813 0.775 0.536 0.433 0.536 0.130 0.329 0.168 0.954 1.524 0.375 0.066 1.068 1.762 0.792 nan 1.170 1.014 3.765 0.860 1.357 1.398 0.737 nan 2.578 3.568 1.992 1.624 0.598 0.778 3.652 4.047 0.725 nan 1.436 0.890 0.408 1.018 0.599 0.147 0.433 0.954 0.321 1.084 0.365 0.212 155 chr1 94309827 94314450 + 0 NA promoter-TSS (NR_030621) promoter-TSS (NR_030621) -250 NR_030621 100126348 NR_030621 ENSG00000211575 MIR760 MIRN760|hsa-mir-760|mir-760 microRNA 760 ncRNA nan nan 6.008 3.155 5.972 3.120 5.212 2.138 0.488 1.867 1.137 5.348 12.388 5.434 0.169 3.704 5.304 2.079 3.540 10.584 nan 10.968 4.555 9.918 10.411 5.392 nan 13.103 20.587 nan 7.341 1.910 5.088 4.841 3.078 7.004 6.368 3.821 2.212 3.644 3.708 0.678 3.299 5.212 5.348 0.651 2.553 1.989 3.117 80 chr1 33633627 33652355 + 0 NA promoter-TSS (NM_001330483) promoter-TSS (NM_001330483) -840 NM_001330483 55223 Hs.656006 NM_018207 ENSG00000116525 TRIM62 DEAR1 tripartite motif containing 62 protein-coding 2.316 nan 5.032 1.121 0.520 0.308 0.402 0.183 0.112 0.318 0.192 0.810 2.134 0.285 0.099 0.724 0.987 0.529 0.549 1.892 1.582 nan 0.245 0.896 0.971 1.236 1.604 1.480 2.155 nan 2.595 0.479 0.794 0.241 0.206 1.262 2.332 1.280 nan 0.459 0.752 0.025 0.831 0.402 0.810 0.280 1.002 0.420 0.908 2091 chr6 21497066 21543209 + 0 NA Intergenic Intergenic -8014 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 1.158 1.057 nan 1.034 1.547 0.807 0.533 0.230 0.153 0.886 0.766 1.620 nan 0.068 0.090 1.116 0.732 4.706 nan 3.283 2.995 nan 0.427 10.348 10.772 0.438 0.644 1.748 1.388 0.563 0.312 1.884 3.680 1.508 1.069 0.375 0.974 2.304 1.282 4.304 0.331 0.376 0.126 0.533 1.620 0.175 0.292 2.036 0.188 1402 chr2 9893336 9914654 + 0 NA Intergenic Intergenic -79576 NM_001318976 9014 Hs.584833 NM_005680 ENSG00000115750 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA-box binding protein associated factor, RNA polymerase I subunit B protein-coding 1.196 1.149 1.012 0.400 0.286 0.263 1.593 0.115 0.084 0.737 0.254 0.624 0.704 0.068 0.093 0.667 1.019 0.338 0.477 1.255 1.156 1.990 0.566 0.233 0.258 0.214 0.503 2.387 2.414 0.722 0.488 0.418 0.540 0.605 0.463 0.442 0.740 1.708 1.181 1.759 4.998 0.111 0.246 1.593 0.624 0.279 0.591 0.137 0.235 294 chr1 220688360 220706834 + 0 NA Intergenic Intergenic -3928 NM_001286128 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 2.794 nan 2.995 4.965 3.577 2.016 1.587 0.182 0.044 1.288 0.625 5.590 7.403 0.357 0.116 1.285 1.855 1.393 2.169 5.902 nan 0.261 0.155 3.518 3.647 0.927 1.237 4.667 4.838 3.001 2.653 0.512 1.228 1.122 0.707 2.251 2.487 2.737 1.306 3.338 0.839 0.200 1.138 1.587 5.590 0.670 1.703 0.262 0.741 1195 chr18 47369834 47386357 + 0 NA TTS (NR_117096) TTS (NR_117096) 37702 NR_003003 677769 NR_003003 ENSG00000267322 SCARNA17 U91 small Cajal body-specific RNA 17 ncRNA nan 1.438 1.311 0.702 0.512 0.222 2.060 0.095 0.079 0.161 0.061 0.326 1.440 0.040 0.055 0.441 0.419 0.655 1.598 1.258 1.287 5.838 1.686 0.268 0.243 0.309 0.609 1.356 1.311 0.847 0.867 0.316 0.445 1.412 2.261 0.211 nan 2.629 2.189 1.925 0.255 0.306 0.179 2.060 0.326 0.597 0.258 0.144 0.112 1994 chr5 72732670 72750511 + 0 NA TTS (NM_004472) TTS (NM_004472) 2762 NM_004472 2297 Hs.519385 NM_004472 ENSG00000251493 FOXD1 FKHL8|FREAC-4|FREAC4 forkhead box D1 protein-coding 2.116 nan 1.183 3.266 1.537 0.704 1.686 0.661 0.137 0.393 0.203 1.795 2.938 1.823 0.150 1.474 1.871 1.151 1.452 2.016 1.539 nan 2.838 0.440 0.513 0.799 nan 1.283 1.841 1.955 2.275 1.529 2.637 0.895 0.574 0.744 0.896 0.743 0.570 0.728 1.822 0.107 0.840 1.686 1.795 0.153 0.186 0.789 0.201 538 chr11 129009215 129018621 + 0 NA intron (NM_001142685, intron 2 of 21) intron (NM_001142685, intron 2 of 21) 48175 NM_001142685 9743 Hs.440379 NM_014715 ENSG00000134909 ARHGAP32 GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP Rho GTPase activating protein 32 protein-coding 0.699 0.884 0.551 0.132 0.381 0.166 0.269 0.152 0.051 0.199 0.117 0.140 0.261 3.517 0.145 0.722 0.719 0.610 1.021 0.318 0.344 0.361 0.148 0.309 0.396 1.214 1.784 0.667 0.659 0.382 0.219 5.395 5.707 0.187 0.404 0.194 nan 0.155 0.170 0.042 0.067 0.051 0.026 0.269 0.140 0.021 0.065 12.355 0.093 2027 chr5 145786308 145794528 + 0 NA Intergenic Intergenic -36455 NM_001040006 10915 Hs.443465 NM_006706 ENSG00000113649 TCERG1 CA150|TAF2S|Urn1 transcription elongation regulator 1 protein-coding nan 0.720 0.634 0.086 0.207 0.194 0.047 0.073 0.019 0.037 0.113 0.029 0.273 0.066 0.089 0.397 0.657 0.194 0.256 0.153 0.274 0.125 0.074 0.047 0.107 0.306 0.508 0.185 0.220 0.395 0.172 0.205 0.276 0.655 0.159 0.158 0.194 0.401 0.365 0.021 0.033 0.023 4.339 0.047 0.029 0.024 0.024 0.072 0.046 620 chr12 55443508 55466869 + 0 NA Intergenic Intergenic 41459 NM_021191 58158 Hs.591024 NM_021191 ENSG00000123307 NEUROD4 ATH-3|ATH3|Atoh3|MATH-3|MATH3|bHLHa4 neuronal differentiation 4 protein-coding nan 1.065 1.679 0.053 0.618 0.398 0.808 0.109 0.118 0.114 0.102 0.220 0.507 0.037 0.086 nan 0.889 0.218 0.243 0.269 nan 0.242 0.147 0.154 0.193 5.508 6.073 0.453 nan 3.043 2.858 0.132 0.205 5.077 6.931 1.321 3.168 0.752 0.639 0.009 0.175 2.120 1.606 0.808 0.220 1.745 0.109 0.030 0.703 79 chr1 33615961 33621311 + 0 NA intron (NM_001330483, intron 4 of 4) intron (NM_001330483, intron 4 of 4) 23515 NM_001330483 55223 Hs.656006 NM_018207 ENSG00000116525 TRIM62 DEAR1 tripartite motif containing 62 protein-coding 3.953 nan 8.487 1.839 2.988 1.255 0.622 0.169 0.209 0.319 0.294 5.288 1.190 0.239 0.104 2.206 3.407 0.286 0.438 5.244 4.213 nan 0.082 0.564 0.569 1.325 2.083 1.588 1.776 nan 7.350 0.811 1.306 0.692 0.844 3.741 9.749 1.617 nan 0.516 0.503 0.161 6.050 0.622 5.288 0.743 0.121 0.429 4.309 179 chr1 151161003 151173268 + 0 NA Intergenic AluJo|SINE|Alu -3885 NM_001330689 8394 Hs.655131 NM_003557 ENSG00000143398 PIP5K1A - phosphatidylinositol-4-phosphate 5-kinase type 1 alpha protein-coding nan nan 2.900 1.663 1.772 0.799 2.670 3.339 0.917 1.578 0.855 2.519 10.178 5.629 0.349 2.765 2.730 4.859 8.373 4.883 nan 5.269 1.552 6.868 7.267 2.141 2.944 3.390 5.635 3.153 2.513 4.344 6.882 2.911 3.356 2.570 4.771 1.870 0.992 0.989 2.506 0.474 1.103 2.670 2.519 0.644 2.714 2.479 1.210 1923 chr4 153268408 153304334 + 0 NA intron (NM_033632, intron 2 of 11) L2c|LINE|L2 -12261 NM_018315 55294 Hs.561245 NM_018315 ENSG00000109670 FBXW7 AGO|CDC4|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4 F-box and WD repeat domain containing 7 protein-coding nan 1.108 0.791 0.754 5.732 3.086 0.281 0.230 0.049 0.456 0.353 0.737 0.547 0.112 0.107 0.452 0.590 0.706 1.185 0.763 1.036 1.558 0.610 2.748 2.695 0.421 0.618 2.351 2.513 0.644 0.441 0.450 0.818 0.385 0.366 0.251 0.568 0.960 0.542 0.098 0.174 0.064 0.223 0.281 0.737 0.014 0.355 0.489 0.063 2498 chr9 32499301 32504893 + 0 NA intron (NM_014314, intron 1 of 17) L1MB8|LINE|L1 24225 NM_014314 23586 Hs.190622 NM_014314 ENSG00000107201 DDX58 RIG-I|RIGI|RLR-1|SGMRT2 DExD/H-box helicase 58 protein-coding 0.570 nan 0.924 0.094 0.220 0.288 0.023 0.215 0.030 0.029 0.147 0.043 0.346 0.058 0.129 5.073 4.357 16.192 4.875 0.359 0.374 0.622 0.142 0.518 0.626 0.329 0.554 0.184 0.192 0.211 0.219 5.591 5.603 0.112 0.120 0.165 0.171 0.677 0.831 0.078 0.048 0.034 0.014 0.023 0.043 0.088 0.018 4.053 1384 chr1_gl000191_random 46049 51260 + 0 NA intron (NR_034035, intron 1 of 6).2 intron (NR_034035, intron 1 of 6).2 1627 NM_001300937 10772 Hs.3530 NM_006625 ENSG00000188529 SRSF10 FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2 serine and arginine rich splicing factor 10 protein-coding nan nan 3.910 4.292 4.568 2.126 4.303 1.753 0.063 1.989 0.944 1.860 6.359 2.169 0.049 3.550 2.842 4.676 6.758 10.955 11.901 4.004 3.151 10.531 10.977 4.886 7.006 6.583 12.760 5.952 6.765 4.043 6.146 2.599 2.803 6.859 5.297 2.631 1.207 3.987 3.077 0.716 2.147 4.303 1.860 1.568 1.402 1.671 1.930 1235 chr18 76527404 76537044 + 0 NA Intergenic Intergenic -208051 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding nan nan 0.701 0.444 0.304 0.116 1.081 0.039 0.050 0.682 0.301 1.598 1.571 0.061 0.266 0.083 0.276 0.473 3.288 nan 5.540 2.576 0.117 0.146 0.076 0.098 4.047 nan 0.225 0.111 0.263 0.176 4.966 7.337 0.045 0.081 0.210 0.323 0.006 0.047 1.113 0.154 1.081 1.598 0.053 0.041 0.032 1443 chr2 66652543 66665696 + 0 NA non-coding (NR_046438, exon 2 of 4) non-coding (NR_046438, exon 2 of 4) 1483 NR_046438 730198 Hs.526753 NR_046438 MEIS1-AS3 - MEIS1 antisense RNA 3 ncRNA 3.209 1.090 nan 1.992 4.828 2.146 2.401 1.539 0.220 1.438 1.105 2.272 7.681 1.158 0.118 1.276 2.096 3.701 5.144 4.809 4.273 nan 1.678 2.062 1.937 1.606 2.193 4.661 5.926 1.865 2.010 0.498 1.864 3.386 2.447 2.593 3.570 1.043 0.549 2.511 2.866 0.992 1.099 2.401 2.272 0.543 2.316 0.594 1.641 1723 chr22 36923610 36935508 + 0 NA Intergenic THE1B|LTR|ERVL-MaLR -4282 NM_003753 8664 Hs.55682 NM_003753 ENSG00000100353 EIF3D EIF3S7|eIF3-p66|eIF3-zeta eukaryotic translation initiation factor 3 subunit D protein-coding 2.103 nan 1.748 1.225 1.887 0.970 1.362 0.645 0.232 0.857 0.563 4.208 3.117 1.372 0.145 1.755 1.968 1.736 2.648 5.789 5.088 1.955 0.823 1.862 2.112 1.564 nan 2.427 3.171 nan 3.263 0.724 1.325 2.864 3.316 1.522 2.165 1.837 0.915 1.973 1.936 0.592 0.661 1.362 4.208 0.803 1.571 0.598 0.689 1212 chr18 55251586 55263097 + 0 NA Intergenic L2a|LINE|L2 -3372 NM_001012515 2235 Hs.365365 NM_000140 ENSG00000066926 FECH EPP|FCE ferrochelatase protein-coding nan 1.170 1.626 0.929 0.708 0.445 1.879 0.284 0.042 0.352 0.149 1.279 1.628 0.669 0.051 1.185 1.498 1.444 2.709 2.230 2.530 6.532 1.413 6.315 6.489 0.683 0.949 1.352 2.267 1.254 1.142 0.776 1.193 1.388 2.258 0.841 0.977 nan 1.812 0.276 0.418 0.175 0.748 1.879 1.279 0.178 0.486 0.243 0.227 1521 chr2 205407152 205420168 + 0 NA intron (NM_205863, intron 1 of 21) intron (NM_205863, intron 1 of 21) 3144 NM_001302769 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 1.199 nan 1.919 0.498 1.219 0.654 0.500 0.526 0.107 0.355 0.140 0.913 1.878 0.091 0.094 0.852 0.652 1.488 2.299 1.316 1.135 0.842 0.300 17.814 18.140 0.611 0.826 1.216 1.674 0.401 0.234 0.356 0.506 0.255 0.164 0.204 0.269 0.609 0.466 0.621 0.232 0.112 1.348 0.500 0.913 0.142 0.047 0.061 0.057 1486 chr2 160337603 160355875 + 0 NA intron (NM_001329857, intron 2 of 36) intron (NM_001329857, intron 2 of 36) -125066 NR_110588 643072 Hs.632541 NR_110587 LOC643072 - uncharacterized LOC643072 ncRNA 0.941 0.936 nan 0.449 4.104 2.371 0.077 0.167 0.124 0.807 0.547 0.774 0.222 0.047 0.104 0.293 0.248 0.296 0.479 0.498 0.759 1.068 0.439 0.272 0.284 0.370 0.557 1.085 1.150 0.340 0.176 0.174 0.257 0.439 0.611 0.351 0.733 0.224 0.207 0.041 0.078 0.088 0.200 0.077 0.774 0.048 0.033 0.082 0.169 1043 chr17 29032687 29040880 + 0 NA non-coding (NR_024187, exon 1 of 8) non-coding (NR_024187, exon 1 of 8) 157 NR_024187 440423 Hs.628886 NR_024187 SUZ12P1 SUZ12P SUZ12 polycomb repressive complex 2 subunit pseudogene 1 pseudo nan nan nan 1.767 4.576 2.853 4.304 1.801 0.409 1.582 0.876 5.705 7.102 3.825 0.130 4.191 5.587 2.407 4.126 6.937 6.409 4.643 1.864 3.544 3.789 2.167 3.115 5.188 7.830 7.239 8.720 4.453 9.261 4.420 3.900 6.061 nan 2.243 1.179 4.315 4.140 1.843 3.656 4.304 5.705 1.244 1.674 3.517 3.534 76 chr1 32960647 32968035 + 0 NA Intergenic AluSz6|SINE|Alu 33683 NM_001145720 728116 Hs.647658 NM_001145720 ENSG00000273274 ZBTB8B ZNF916B zinc finger and BTB domain containing 8B protein-coding 3.399 nan 2.533 3.945 1.896 1.042 2.448 1.127 0.371 1.357 0.683 7.773 3.162 2.308 0.170 2.268 2.281 2.603 2.887 4.184 3.997 nan 1.043 2.351 2.156 2.276 3.125 2.611 4.491 nan 1.606 1.840 2.713 0.928 0.890 1.101 1.783 2.772 nan 1.947 2.221 0.117 0.717 2.448 7.773 0.604 0.936 0.672 0.386 2033 chr5 154127118 154139705 + 0 NA intron (NM_015315, intron 1 of 18) intron (NM_015315, intron 1 of 18) 40949 NM_015315 23367 Hs.292078 NM_015315 ENSG00000155506 LARP1 LARP La ribonucleoprotein domain family member 1 protein-coding 2.995 nan 2.390 1.265 2.488 1.274 1.646 1.963 0.214 1.234 0.625 2.614 4.196 2.893 0.139 1.949 1.949 2.579 3.775 2.233 2.213 2.692 1.067 3.979 3.607 2.325 3.011 2.109 2.849 6.563 7.850 2.467 4.620 3.974 3.412 3.497 3.308 1.161 0.650 0.949 2.664 1.091 1.855 1.646 2.614 0.856 1.644 1.445 1.836 536 chr11 128388397 128404065 + 0 NA intron (NR_120581, intron 1 of 3) MIRb|SINE|MIR 194 NR_120581 101929517 Hs.562320 NR_120581 ENSG00000254588 LOC101929517 - uncharacterized LOC101929517 ncRNA 1.075 1.198 1.081 0.776 1.400 0.605 0.594 1.544 0.093 1.287 0.704 1.031 2.320 0.654 0.106 0.875 1.372 0.974 1.582 1.893 1.895 2.210 0.659 0.245 0.294 0.270 0.341 2.217 2.867 0.619 0.484 1.002 1.282 3.454 3.765 0.620 nan 1.641 0.950 0.989 0.011 0.928 0.269 0.594 1.031 0.531 0.208 0.758 1342 chr19 47315643 47344461 + 0 NA Intergenic Intergenic 3909 NR_024258 100170220 Hs.541243 NR_024258 SNAR-E - small ILF3/NF90-associated RNA E snRNA 1.338 2.022 1.450 1.679 0.548 0.350 0.396 0.230 0.239 0.229 0.122 1.692 1.151 0.257 0.158 0.296 0.364 0.323 0.504 0.977 1.043 1.681 0.701 0.815 0.977 0.692 1.032 4.279 4.234 0.798 0.646 0.406 0.643 0.243 0.393 0.599 1.421 1.064 0.744 0.348 0.496 0.064 0.184 0.396 1.692 0.273 0.523 0.286 0.185 458 chr11 62647349 62651912 + 0 NA intron (NM_001012662, intron 5 of 11) intron (NM_001012662, intron 5 of 11) 459 NR_037193 6520 Hs.502769 NM_002394 ENSG00000168003 SLC3A2 4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE solute carrier family 3 member 2 protein-coding nan 4.671 3.811 6.877 10.037 5.335 6.537 5.326 0.281 3.058 1.195 6.211 19.070 7.417 0.301 6.807 6.831 8.093 12.883 8.976 7.073 8.564 5.956 12.581 12.824 4.662 5.884 7.831 10.816 3.246 3.973 7.594 12.790 9.332 12.252 3.249 7.883 2.614 1.030 7.900 8.027 1.972 7.495 6.537 6.211 1.379 2.073 3.657 1.274 2568 chr9 137230761 137252075 + 0 NA intron (NM_002957, intron 1 of 9) intron (NM_002957, intron 1 of 9) 23109 NM_002957 6256 Hs.590886 NM_002957 ENSG00000186350 RXRA NR2B1 retinoid X receptor alpha protein-coding nan 0.564 1.157 0.083 0.339 0.167 0.370 0.397 0.113 0.037 0.061 0.185 1.614 0.131 0.035 0.697 1.353 0.265 0.595 0.620 0.553 nan 0.043 0.231 0.315 0.649 0.972 0.218 0.203 3.235 3.776 0.695 0.626 0.359 0.377 0.303 0.263 0.414 0.440 0.816 0.025 0.054 0.011 0.370 0.185 0.959 0.110 0.117 0.035 2130 chr6 43056852 43096465 + 0 NA intron (NM_001270398, intron 1 of 19) L1MC5|LINE|L1 32106 NM_001270398 5754 Hs.90572 NM_002821 ENSG00000112655 PTK7 CCK-4|CCK4 protein tyrosine kinase 7 (inactive) protein-coding 1.606 1.097 2.812 0.352 0.612 0.401 1.362 0.518 0.181 0.439 0.212 0.614 1.518 0.205 0.125 1.814 2.656 1.055 1.631 0.747 0.765 2.572 0.831 1.130 1.086 1.372 1.856 1.287 nan 0.866 0.620 1.345 1.594 3.525 3.590 0.695 1.407 1.236 0.768 1.695 1.298 1.154 1.281 1.362 0.614 0.182 0.125 1.611 0.353 2251 chr7 30632802 30638187 + 0 NA intron (NM_002047, intron 1 of 16) intron (NM_002047, intron 1 of 16) 985 NM_002047 2617 Hs.404321 NM_002047 ENSG00000106105 GARS CMT2D|DSMAV|GlyRS|HMN5|SMAD1 glycyl-tRNA synthetase protein-coding 7.797 4.532 6.108 5.292 4.550 2.229 4.011 5.639 0.238 4.001 1.880 8.008 9.516 9.784 0.301 10.111 10.664 5.068 6.997 9.324 nan 9.678 4.668 23.752 25.518 5.449 nan nan nan 5.714 6.975 5.053 8.321 8.672 9.442 5.753 9.421 3.477 1.989 3.658 4.572 1.181 4.679 4.011 8.008 1.404 3.618 3.043 2.292 2545 chr9 128604569 128620130 + 0 NA intron (NR_024123, intron 2 of 6) intron (NR_024123, intron 2 of 6) 101871 NM_001134778 5090 Hs.428027 NM_006195 ENSG00000167081 PBX3 - PBX homeobox 3 protein-coding nan nan 1.429 0.388 0.375 0.228 0.436 0.297 0.079 0.358 0.318 0.169 nan 0.182 0.070 0.181 0.162 0.206 0.357 0.446 0.547 0.644 0.255 0.227 0.224 1.270 nan 0.528 0.552 6.314 4.242 0.096 0.174 1.508 1.612 1.962 4.317 nan 0.480 0.057 0.206 0.459 0.097 0.436 0.169 0.262 0.072 0.038 1.559 1485 chr2 157187145 157209168 + 0 NA Intergenic CpG -8869 NM_006186 4929 Hs.563344 NM_006186 ENSG00000153234 NR4A2 HZF-3|NOT|NURR1|RNR1|TINUR nuclear receptor subfamily 4 group A member 2 protein-coding nan 2.582 nan 2.916 4.081 2.334 2.250 1.776 0.240 1.559 0.849 2.251 9.236 1.390 0.100 2.087 2.785 4.403 5.342 2.441 1.904 3.002 1.396 5.565 6.125 3.840 3.970 2.836 3.829 1.177 1.191 0.704 1.352 3.096 2.468 2.558 4.538 0.912 0.720 2.083 1.227 0.525 1.264 2.250 2.251 0.711 2.164 0.473 1.845 545 chr12 2984913 2988512 + 0 NA promoter-TSS (NM_001243089) promoter-TSS (NM_001243089) 347 NM_001252500 83695 Hs.198853 NM_001252499 ENSG00000171792 RHNO1 C12orf32|HKMT1188|RHINO RAD9-HUS1-RAD1 interacting nuclear orphan 1 protein-coding 7.407 nan 5.308 13.444 6.583 3.126 5.721 5.220 0.633 4.330 2.083 9.321 17.102 7.683 0.331 4.247 3.960 9.484 12.165 16.871 13.740 12.276 5.663 13.920 14.242 5.924 8.010 8.775 18.957 6.204 5.700 3.166 5.560 8.468 9.203 6.990 9.094 2.821 1.764 6.801 6.906 1.743 6.052 5.721 9.321 3.051 1.579 1.511 3.298 1926 chr4 174252870 174258061 + 0 NA promoter-TSS (NM_001130689) promoter-TSS (NM_001130689) 44 NM_001130688 3148 Hs.434953 NM_002129 ENSG00000164104 HMGB2 HMG2 high mobility group box 2 protein-coding nan nan 3.648 11.452 8.839 4.974 2.556 3.033 0.157 2.850 1.438 8.572 15.526 5.158 0.154 5.615 6.246 8.883 nan 12.146 10.275 7.987 4.535 8.558 8.193 4.296 5.548 7.107 9.937 10.266 13.556 2.330 5.945 7.464 7.843 7.499 7.843 2.494 1.315 4.879 4.848 2.340 7.293 2.556 8.572 1.269 1.595 2.421 2.855 2144 chr6 50781507 50818926 + 0 NA intron (NM_003221, intron 3 of 6) intron (NM_003221, intron 3 of 6) 13777 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 0.760 1.403 nan 0.179 1.374 0.707 0.586 0.124 0.095 0.071 0.076 0.891 1.234 0.026 0.102 0.797 0.509 11.466 13.870 0.617 0.786 0.112 0.082 1.049 1.070 0.129 0.228 0.342 0.410 0.223 0.075 0.735 1.083 1.770 1.564 0.164 0.303 0.212 0.241 0.033 0.099 0.237 0.623 0.586 0.891 0.013 0.038 0.569 0.036 1699 chr22 18110079 18123525 + 0 NA Intergenic L2b|LINE|L2 -4548 NM_001270726 23786 Hs.631672 NM_015367 ENSG00000099968 BCL2L13 BCL-RAMBO|Bcl2-L-13|MIL1 BCL2 like 13 protein-coding 3.106 nan 2.133 1.505 2.408 1.336 1.843 2.133 0.269 1.209 0.554 2.184 3.756 1.802 0.087 2.734 2.486 3.919 7.585 2.513 2.482 3.491 1.767 9.978 10.571 3.260 4.124 3.097 4.686 4.580 4.199 1.521 2.480 3.286 5.094 2.626 2.877 3.355 2.088 0.802 1.191 0.406 0.773 1.843 2.184 0.837 1.501 0.641 0.865 506 chr11 100501477 100516005 + 0 NA Intergenic Intergenic -49666 NM_152432 143872 Hs.741465 NM_152432 ENSG00000165895 ARHGAP42 GRAF3 Rho GTPase activating protein 42 protein-coding 1.115 1.080 1.034 0.060 0.330 0.088 0.417 0.274 0.088 0.142 0.092 0.066 0.749 0.067 0.104 0.562 0.318 0.249 0.398 0.362 0.447 0.144 0.096 0.594 0.613 4.500 5.003 0.146 0.162 1.404 0.788 0.202 0.360 0.436 0.278 1.009 2.554 0.750 0.691 0.031 0.037 0.068 0.425 0.417 0.066 0.142 0.154 0.061 0.844 342 chr10 12083592 12085979 + 0 NA promoter-TSS (NM_015542) promoter-TSS (NM_015542) 55 NM_015542 26019 Hs.370689 NM_015542 ENSG00000151461 UPF2 HUPF2|RENT2|smg-3 UPF2 regulator of nonsense transcripts homolog (yeast) protein-coding nan 4.329 5.506 7.490 7.458 3.331 7.274 9.851 0.738 2.977 0.995 7.268 12.435 5.730 0.179 12.037 11.409 11.499 15.730 9.013 11.306 16.264 12.474 13.112 13.852 6.405 7.356 10.478 17.905 8.117 7.477 8.066 10.208 5.389 6.952 7.906 7.453 3.767 1.634 3.057 4.488 1.446 2.427 7.274 7.268 1.646 3.274 2.949 3.270 720 chr13 72356916 72378951 + 0 NA intron (NM_080760, intron 2 of 8) AluJo|SINE|Alu 73397 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding nan 1.080 1.144 0.084 0.514 0.288 0.905 0.051 0.103 0.092 0.113 0.136 0.333 0.039 0.077 0.671 0.688 0.199 0.341 1.328 1.802 nan 0.151 0.110 0.122 0.686 0.838 0.252 0.256 nan 1.537 0.229 0.382 0.489 0.917 2.642 nan 0.188 0.188 0.028 0.144 0.225 0.237 0.905 0.136 0.392 0.023 0.081 1.335 2578 chr9 139795311 139802002 + 0 NA intron (NM_021138, intron 4 of 10) FRAM|SINE|Alu 17471 NR_039697 100616480 NR_039697 ENSG00000266507 MIR4479 - microRNA 4479 ncRNA nan 0.755 1.564 0.310 0.404 0.171 0.325 2.068 0.293 0.142 0.110 0.215 1.776 0.274 0.092 0.272 0.318 1.330 3.107 1.076 1.160 nan 0.141 0.222 0.198 0.202 0.354 0.503 0.640 0.483 0.438 0.214 0.233 0.208 0.242 0.193 0.433 0.384 0.297 0.090 0.178 0.188 0.325 0.215 0.420 6.718 0.015 0.092 2191 chr6 155646216 155652409 + 0 NA Intergenic Intergenic -13695 NM_016020 51106 Hs.279908 NM_016020 ENSG00000029639 TFB1M CGI-75|CGI75|mtTFB|mtTFB1 transcription factor B1, mitochondrial protein-coding nan 1.359 0.975 0.748 0.546 0.259 1.180 0.230 0.129 0.103 0.187 1.127 0.634 0.069 0.111 0.672 0.538 1.527 1.969 0.994 nan 12.521 8.970 0.230 0.332 0.525 0.597 1.676 1.656 0.748 0.332 0.412 0.653 0.772 1.397 0.332 nan 0.916 0.403 0.167 0.125 0.122 0.619 1.180 1.127 0.094 0.050 0.066 0.061 2584 chrX 13386735 13410204 + 0 NA Intergenic Intergenic 45109 NR_045260 100133123 Hs.449499 NR_045260 ENSG00000226985 LINC01203 - long intergenic non-protein coding RNA 1203 ncRNA 1.134 nan 1.680 0.236 0.293 0.123 0.506 1.625 0.207 0.140 0.181 1.004 1.283 0.050 0.041 0.206 0.242 0.286 0.787 0.954 0.861 1.468 0.658 0.323 0.333 1.574 1.826 0.458 0.344 1.318 1.055 0.170 0.276 1.238 1.421 1.554 5.084 1.011 0.524 0.095 0.088 0.421 0.247 0.506 1.004 0.169 0.714 0.101 0.863 1997 chr5 82103369 82110745 + 0 NA Intergenic L2a|LINE|L2 -28917 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 0.680 1.115 0.612 0.071 0.327 0.151 0.330 0.185 0.093 0.022 0.022 0.090 0.307 0.073 0.094 0.635 0.291 7.321 2.218 0.205 0.253 0.106 0.049 0.222 0.266 0.462 0.626 0.246 0.193 0.303 0.170 0.085 0.205 0.363 0.301 0.164 nan 0.269 0.306 0.015 0.132 0.052 0.010 0.330 0.090 0.056 0.015 0.067 1297 chr19 36656168 36680599 + 0 NA Intergenic AluSq2|SINE|Alu -24612 NM_001864 1346 Hs.421621 NM_001864 ENSG00000161281 COX7A1 COX7A|COX7AH|COX7AM cytochrome c oxidase subunit 7A1 protein-coding 1.114 0.869 0.819 1.051 0.882 0.427 0.286 0.195 0.290 0.191 0.208 2.380 2.393 3.301 0.266 0.443 0.563 1.863 1.907 0.903 0.897 3.000 1.068 0.652 0.679 0.379 0.670 0.373 0.547 nan 1.078 0.485 0.628 0.271 0.231 0.883 1.874 1.769 1.009 0.135 0.130 0.031 0.545 0.286 2.380 0.089 0.117 0.150 0.628 398 chr11 3009185 3024670 + 0 NA Intergenic Intergenic -3320 NM_005969 4676 Hs.731784 NM_005969 ENSG00000205531 NAP1L4 NAP1L4b|NAP2|NAP2L|hNAP2 nucleosome assembly protein 1 like 4 protein-coding 2.635 2.701 4.252 1.462 1.295 0.725 1.263 0.638 0.099 1.218 0.743 1.736 8.191 0.944 0.106 4.401 6.076 2.778 3.731 2.244 2.368 3.709 1.227 5.747 5.888 2.234 3.073 1.358 2.862 2.814 3.027 2.905 5.303 4.510 4.984 1.849 1.585 2.171 1.274 1.377 1.138 1.204 0.433 1.263 1.736 0.664 0.458 2.742 0.493 2132 chr6 43736804 43743450 + 0 NA intron (NM_001287044, intron 1 of 6) intron (NM_001287044, intron 1 of 6) 405 NM_001287044 7422 Hs.73793 NM_003376 ENSG00000112715 VEGFA MVCD1|VEGF|VPF vascular endothelial growth factor A protein-coding 5.572 3.135 4.722 3.242 5.580 2.494 6.008 5.160 0.801 1.843 1.042 4.910 7.339 6.389 0.122 3.106 6.495 4.707 7.538 5.873 5.833 4.324 1.625 15.557 16.860 1.630 2.443 7.535 nan 5.104 7.615 6.004 11.113 1.771 2.365 5.201 8.905 1.283 0.736 4.925 5.742 0.524 4.749 6.008 4.910 1.298 2.174 3.179 3.329 583 chr12 14994013 15008468 + 0 NA Intergenic Intergenic -4827 NM_021071 420 Hs.591158 NM_021071 ENSG00000111339 ART4 ARTC4|CD297|DO|DOK1 ADP-ribosyltransferase 4 (Dombrock blood group) protein-coding 1.026 0.675 1.081 0.254 0.306 0.090 0.132 0.578 0.034 0.169 0.148 0.058 0.476 0.094 0.105 0.176 0.160 3.506 10.932 nan 0.605 0.295 0.149 0.289 0.309 0.909 1.229 0.476 0.416 0.500 0.247 0.204 0.325 0.070 0.043 0.463 1.842 0.406 0.437 0.100 0.099 0.006 0.184 0.132 0.058 0.034 0.047 0.062 0.317 278 chr1 205546597 205552970 + 0 NA intron (NM_181644, intron 2 of 9) intron (NM_181644, intron 2 of 9) 11671 NM_181644 148808 Hs.567714 NM_181644 ENSG00000174514 MFSD4A MFSD4|UNQ3064 major facilitator superfamily domain containing 4A protein-coding 1.029 7.284 0.995 0.320 0.485 0.352 0.362 0.116 0.128 0.296 0.090 0.309 3.847 0.070 0.134 0.577 0.502 0.732 1.719 1.411 1.341 0.676 0.355 nan nan 0.289 0.598 0.550 0.777 0.434 0.365 0.302 0.333 0.572 0.653 0.674 1.106 0.951 0.706 1.020 0.512 0.060 0.087 0.362 0.309 0.045 0.089 0.045 0.214 366 chr10 92961371 92982388 + 0 NA intron (NM_001257101, intron 1 of 9) MIR|SINE|MIR -8029 NM_001256549 84333 Hs.500512 NM_032373 ENSG00000180628 PCGF5 RNF159 polycomb group ring finger 5 protein-coding 0.704 1.569 0.988 2.473 3.946 2.041 0.079 0.306 0.139 1.193 0.617 4.379 3.063 0.140 0.094 0.436 0.612 0.749 1.025 4.007 3.918 4.454 1.616 0.814 0.792 0.549 0.822 nan 6.622 0.316 0.246 0.308 0.632 1.024 0.790 0.535 0.938 2.201 1.164 2.087 2.540 0.205 0.121 0.079 4.379 0.116 0.397 0.292 0.212 1455 chr2 86260868 86268303 + 0 NA intron (NM_015425, intron 27 of 33) intron (NM_015425, intron 27 of 33) -13594 NR_026984 90784 Hs.594051 NR_026984 LOC90784 - uncharacterized LOC90784 ncRNA nan 0.673 nan 3.034 3.803 1.653 1.720 1.022 0.152 1.892 0.908 3.444 7.449 0.132 0.121 0.272 0.807 0.328 0.677 8.984 9.555 2.761 1.006 0.572 0.630 1.527 2.017 6.650 6.240 3.560 3.932 0.416 0.672 1.510 2.092 0.218 0.527 1.856 0.992 3.746 1.437 0.383 2.093 1.720 3.444 1.868 1.046 0.398 0.132 180 chr1 151252394 151257393 + 0 NA promoter-TSS (NR_135595) promoter-TSS (NR_135595) 105 NM_001304763 57592 Hs.186756 NM_020832 ENSG00000143373 ZNF687 PDB6 zinc finger protein 687 protein-coding 7.703 nan 7.828 3.138 4.980 1.861 3.728 3.706 0.480 2.631 1.171 3.252 21.716 5.023 0.150 5.454 5.465 7.540 11.053 8.127 nan 8.767 5.921 11.325 11.957 3.359 4.656 9.920 14.602 6.059 5.696 5.966 9.049 5.972 7.273 9.328 10.844 2.725 1.831 3.465 9.121 0.796 2.431 3.728 3.252 0.957 5.802 2.754 4.042 2151 chr6 53042800 53061509 + 0 NA Intergenic Intergenic -38530 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing homolog 1 protein-coding 0.932 1.438 nan 1.432 0.916 0.419 0.513 0.164 0.188 0.261 0.214 1.170 1.938 0.088 0.143 0.427 0.469 0.355 0.491 0.739 0.834 2.930 0.751 0.402 0.355 0.350 0.569 6.401 4.618 0.432 0.162 0.234 0.412 0.791 0.894 0.235 0.341 1.513 0.820 0.238 0.148 0.086 0.096 0.513 1.170 0.021 0.508 0.095 0.047 1337 chr19 45593735 45643583 + 0 NA intron (NM_019121, intron 1 of 12) MIR3|SINE|MIR 22228 NM_019121 284352 Hs.285363 NM_019121 ENSG00000104866 PPP1R37 LRRC68 protein phosphatase 1 regulatory subunit 37 protein-coding 2.286 1.835 3.312 1.505 4.587 2.297 1.534 0.368 0.090 1.223 0.874 4.306 1.249 0.624 0.125 1.141 1.321 1.127 1.625 5.115 5.325 4.632 1.556 2.312 2.411 0.845 1.353 3.735 4.179 1.783 1.523 1.353 1.845 2.738 2.672 1.164 1.635 2.135 1.247 1.422 4.126 0.970 0.732 1.534 4.306 0.427 0.688 0.774 0.458 2152 chr6 57158884 57168061 + 0 NA Intergenic Intergenic -16131 NM_001282488 5558 Hs.654580 NM_000947 ENSG00000146143 PRIM2 PRIM2A|p58 primase (DNA) subunit 2 protein-coding 0.951 0.849 nan 0.203 0.186 0.191 0.139 0.985 0.299 0.085 0.118 0.221 0.411 0.035 0.122 0.335 0.257 0.174 0.243 0.304 0.302 0.233 0.066 0.217 0.290 5.182 4.832 0.744 0.699 0.696 0.342 0.120 0.150 0.064 0.106 0.336 0.466 0.365 0.442 0.815 0.123 0.021 0.018 0.139 0.221 0.032 0.045 0.021 0.046 141 chr1 72095816 72110356 + 0 NA intron (NM_173808, intron 4 of 6) intron (NM_173808, intron 4 of 6) 199609 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA nan 0.758 1.229 0.261 0.282 0.155 0.168 0.138 0.099 1.502 0.748 2.064 0.289 0.019 0.126 0.351 0.236 0.178 0.270 1.568 nan 9.436 3.376 0.425 0.442 2.267 nan 0.710 0.680 0.377 0.219 0.152 0.211 0.815 0.376 0.372 0.768 1.394 0.888 0.065 0.375 0.178 0.323 0.168 2.064 0.087 0.112 0.041 0.187 991 chr16 87942630 87949542 + 0 NA intron (NM_001739, intron 2 of 6) MamRep605|Unknown|Unknown 24026 NM_001739 763 Hs.177446 NM_001739 ENSG00000174990 CA5A CA5|CA5AD|CAV|CAVA|GS1-21A4.1 carbonic anhydrase 5A protein-coding nan 0.909 1.686 0.915 4.579 2.422 1.244 0.077 0.046 0.997 0.533 1.990 1.385 0.109 0.079 0.369 0.522 0.253 0.509 3.722 3.012 3.516 2.939 0.508 0.555 0.653 0.952 1.777 1.794 0.883 0.622 0.396 0.420 0.964 1.194 0.327 0.779 3.137 1.627 0.319 0.473 0.042 0.813 1.244 1.990 0.526 6.343 0.071 0.089 758 chr14 23788327 23793427 + 0 NA exon (NM_004643, exon 1 of 7) exon (NM_004643, exon 1 of 7) 1480 NM_004643 8106 Hs.707712 NM_004643 ENSG00000100836 PABPN1 OPMD|PAB2|PABII|PABP-2|PABP2 poly(A) binding protein nuclear 1 protein-coding 9.867 3.686 5.958 6.310 3.841 2.322 4.543 3.243 0.199 1.945 1.147 5.183 7.108 3.506 0.127 3.813 3.250 5.953 7.843 6.228 6.342 7.176 3.960 11.368 11.091 4.219 5.603 6.433 nan 12.179 10.775 3.304 6.213 6.018 7.156 17.793 16.113 2.807 1.311 4.141 3.602 0.921 2.330 4.543 5.183 1.953 3.434 1.181 8.191 1530 chr2 212789499 212796433 + 0 NA intron (NM_005235, intron 3 of 27) intron (NM_005235, intron 3 of 27) 498118 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA nan 1.208 nan 0.104 0.756 0.368 0.294 0.094 0.791 0.410 0.328 0.345 0.552 0.105 0.785 1.443 6.646 7.366 0.193 0.251 7.985 4.389 0.520 0.392 0.924 1.154 0.752 nan 0.436 0.140 0.653 1.451 4.470 5.053 0.224 0.367 0.292 0.348 0.024 0.051 0.908 0.114 0.294 0.328 0.087 0.201 0.092 1534 chr2 213335251 213414740 + 0 NA intron (NM_005235, intron 1 of 27) intron (NM_005235, intron 1 of 27) 28357 NM_005235 2066 Hs.390729 NM_005235 ENSG00000178568 ERBB4 ALS19|HER4|p180erbB4 erb-b2 receptor tyrosine kinase 4 protein-coding nan 1.105 nan 0.244 0.347 0.154 0.130 0.111 0.033 0.219 0.179 0.123 0.796 1.791 0.163 0.747 0.678 1.021 1.952 0.248 0.264 1.171 0.461 0.535 0.513 4.763 5.876 0.395 nan 0.469 0.208 0.152 0.261 0.942 1.391 0.289 0.505 0.320 0.325 0.075 0.037 0.218 0.182 0.130 0.123 0.051 0.068 0.040 0.062 376 chr10 115825407 115835862 + 0 NA Intergenic Intergenic 26828 NM_000684 153 Hs.99913 NM_000684 ENSG00000043591 ADRB1 ADRB1R|B1AR|BETA1AR|RHR adrenoceptor beta 1 protein-coding 0.485 nan 0.557 0.068 0.432 0.284 0.086 0.476 0.199 0.230 0.117 0.080 0.290 0.002 0.088 0.623 0.469 7.788 2.719 0.115 0.089 0.912 0.232 0.224 0.227 0.199 0.318 0.520 0.533 0.167 0.112 0.174 0.257 0.109 0.086 0.131 0.116 0.608 0.415 0.043 0.233 0.028 0.058 0.086 0.080 0.231 0.114 0.082 1460 chr2 100119871 100129211 + 0 NA Intergenic MER110-int|LTR|ERV1 -18023 NM_001321458 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1, DNA directed polymerase protein-coding 1.085 nan 2.253 2.027 3.751 2.018 0.232 0.118 0.120 0.808 0.660 4.754 2.077 0.023 0.048 0.327 0.212 0.187 0.360 6.863 8.488 2.945 0.684 0.343 0.333 0.728 1.261 5.400 5.301 0.687 0.359 0.202 0.304 1.507 2.100 0.219 0.313 1.791 0.830 2.981 3.300 0.904 0.051 0.232 4.754 0.162 1.870 0.074 0.105 290 chr1 214150343 214196901 + 0 NA intron (NM_001270616, intron 2 of 4) intron (NM_001270616, intron 2 of 4) 11778 NM_002763 5629 Hs.741808 NM_002763 ENSG00000117707 PROX1 - prospero homeobox 1 protein-coding 1.841 2.253 3.283 4.769 1.920 0.992 0.619 0.124 0.072 3.027 1.627 4.896 nan 0.074 0.114 2.152 2.582 2.735 2.088 8.472 8.395 nan 1.885 4.645 4.919 2.891 nan 4.852 4.667 0.992 0.908 1.115 2.091 2.911 2.729 1.043 2.412 3.725 1.891 0.048 1.239 0.672 1.812 0.619 4.896 0.284 1.566 1.215 0.407 2083 chr6 19833502 19882878 + 0 NA Intergenic Intergenic 20589 NM_001546 3400 Hs.519601 NM_001546 ENSG00000172201 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, HLH protein protein-coding 1.821 nan 2.041 1.519 3.426 1.936 0.824 0.491 0.127 1.023 0.491 4.402 4.004 1.836 0.104 0.852 0.723 1.495 2.411 3.254 3.228 4.190 1.490 1.975 1.908 1.209 1.515 0.773 1.006 0.698 0.559 0.631 0.959 1.872 1.677 0.694 1.109 2.627 1.240 2.201 0.834 0.327 1.053 0.824 4.402 0.505 0.648 0.301 0.168 1977 chr5 56777384 56802032 + 0 NA Intergenic Intergenic -11072 NM_001017992 345651 Hs.482167 NM_001017992 ENSG00000169067 ACTBL2 ACT actin, beta like 2 protein-coding nan nan 0.700 0.036 0.467 0.292 0.254 0.850 0.058 0.108 0.093 0.015 1.481 1.002 0.135 0.191 0.192 2.558 7.048 0.148 0.178 nan 0.077 0.152 0.136 1.144 1.343 0.258 0.220 nan 0.218 0.077 0.083 0.122 0.168 0.256 0.551 0.534 0.461 0.533 0.091 0.031 0.087 0.254 0.015 0.067 0.041 0.020 0.095 615 chr12 54581406 54602568 + 0 NA Intergenic AluSg7|SINE|Alu -9209 NM_001243791 23583 Hs.632721 NM_014311 ENSG00000123415 SMUG1 FDG|HMUDG|UNG3 single-strand-selective monofunctional uracil-DNA glycosylase 1 protein-coding nan 0.794 0.923 0.266 0.428 0.249 0.290 0.206 0.115 0.185 0.182 0.232 1.309 0.277 0.083 nan 4.748 7.750 4.899 0.628 nan 0.981 0.361 6.410 6.816 0.804 nan 0.576 nan 0.720 0.403 1.771 2.666 0.501 0.530 0.555 1.570 0.757 0.542 0.145 0.531 0.140 0.056 0.290 0.232 0.238 0.193 1.276 0.345 2080 chr6 19714393 19739073 + 0 NA Intergenic Intergenic 78257 NR_134651 100506885 Hs.346489 NR_134649 ENSG00000228412 LOC100506885 - uncharacterized LOC100506885 ncRNA 1.236 nan 1.312 0.249 0.494 0.220 0.702 0.424 0.156 0.393 0.209 0.934 0.709 2.690 0.147 0.491 0.530 0.223 0.483 0.536 0.703 1.260 0.345 0.343 0.359 0.860 1.178 0.305 0.270 0.746 0.460 0.483 0.512 0.741 1.293 1.374 3.998 0.738 0.629 0.151 0.570 0.097 0.264 0.702 0.934 0.337 0.066 0.121 0.836 1257 chr19 8038913 8051857 + 0 NA intron (NM_001419, intron 3 of 5) intron (NM_001419, intron 3 of 5) 25144 NM_001419 1994 Hs.184492 NM_001419 ENSG00000066044 ELAVL1 ELAV1|HUR|Hua|MelG ELAV like RNA binding protein 1 protein-coding 0.747 0.559 1.204 0.396 0.312 0.211 0.193 0.158 0.016 0.194 0.070 0.101 0.486 0.151 0.058 0.276 0.449 0.403 0.895 0.551 0.688 0.351 0.171 0.404 0.493 0.286 0.537 0.827 nan 0.573 0.532 0.206 0.317 0.208 0.167 0.195 0.286 0.600 0.444 4.704 0.294 0.029 0.102 0.193 0.101 0.122 0.046 0.069 0.086 1761 chr3 25333059 25351544 + 0 NA intron (NM_001290216, intron 4 of 10) AluSx1|SINE|Alu -39992 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 0.686 1.260 0.664 0.062 0.258 0.095 0.347 0.130 0.070 0.009 0.072 0.077 0.142 0.135 0.051 0.187 0.105 3.569 8.893 0.271 0.365 0.092 0.052 0.094 0.137 0.343 0.564 0.131 0.140 nan 0.155 0.146 0.275 1.024 1.122 0.087 0.153 0.316 0.347 0.191 0.053 0.320 0.136 0.347 0.077 0.018 0.038 0.037 0.033 2297 chr7 103552322 103558335 + 0 NA intron (NM_173054, intron 2 of 63) intron (NM_173054, intron 2 of 63) 74635 NM_005045 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding nan 0.617 0.762 0.161 0.166 0.160 0.122 0.095 0.081 0.419 0.165 0.278 0.375 0.037 0.124 0.628 0.312 7.229 2.853 0.228 0.363 0.491 0.244 0.603 0.521 0.473 0.537 0.339 0.295 0.481 0.203 0.197 0.251 0.259 0.330 0.380 nan 0.793 0.748 0.028 0.060 0.063 0.040 0.122 0.278 0.068 0.067 0.102 762 chr14 24454041 24463522 + 0 NA intron (NM_198083, intron 1 of 7) intron (NM_198083, intron 1 of 7) 754 NM_198083 317749 Hs.743442 NM_198083 ENSG00000187630 DHRS4L2 SDR25C3 dehydrogenase/reductase 4 like 2 protein-coding nan 1.359 3.107 1.044 0.647 0.203 0.419 0.278 0.208 0.134 0.097 0.833 0.796 0.137 0.120 0.303 0.359 0.448 0.632 0.497 0.554 0.633 0.267 1.150 1.229 6.481 7.615 2.252 nan 1.545 1.758 0.352 0.556 0.538 0.502 0.410 0.824 1.138 0.681 0.477 0.882 0.252 0.387 0.419 0.833 0.350 1.872 0.344 0.169 2106 chr6 31780690 31786812 + 0 NA promoter-TSS (NM_005527) promoter-TSS (NM_005527) 460 NM_005345 3303 Hs.274402 NM_005345 ENSG00000204389 HSPA1A HEL-S-103|HSP70-1|HSP70-1A|HSP70.1|HSP70I|HSP72|HSPA1 heat shock protein family A (Hsp70) member 1A protein-coding nan 2.270 nan 3.298 4.289 1.990 7.204 2.712 0.893 0.742 0.847 3.808 11.897 4.588 0.190 3.540 4.405 0.560 nan nan 3.608 5.648 1.749 2.330 2.311 2.080 2.733 4.022 5.488 2.128 1.617 3.727 12.328 3.524 3.695 3.754 5.771 2.269 1.089 2.065 2.432 0.888 2.051 7.204 3.808 0.206 2.017 2.091 2.695 756 chr14 23745915 23757620 + 0 NA intron (NM_020834, intron 1 of 1) intron (NM_020834, intron 1 of 1) 3542 NM_020834 57594 Hs.632332 NM_020834 ENSG00000215271 HOMEZ KIAA1443 homeobox and leucine zipper encoding protein-coding nan 1.977 3.010 1.490 1.126 0.599 0.471 1.010 0.300 0.366 0.253 0.994 2.675 1.335 0.107 0.467 0.661 1.114 1.573 1.849 1.354 1.317 0.269 1.524 1.604 1.173 1.643 1.529 nan 2.457 2.538 0.685 1.322 1.108 1.094 5.866 10.905 0.881 0.634 1.279 1.293 0.221 0.658 0.471 0.994 0.333 0.771 0.659 4.128 410 chr11 12709817 12722817 + 0 NA intron (NM_021961, intron 2 of 12) intron (NM_021961, intron 2 of 12) 20348 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 1.278 nan 1.557 3.728 1.028 0.392 0.981 2.374 0.198 1.678 0.794 2.451 4.546 0.178 0.085 nan 1.131 0.642 1.458 2.401 2.418 1.141 0.407 0.772 0.775 4.424 nan 4.029 4.391 0.804 0.430 1.140 1.848 2.501 3.020 0.568 1.333 3.041 nan 3.131 0.562 0.535 0.236 0.981 2.451 0.127 0.809 1.250 0.143 394 chr11 835841 847097 + 0 NA intron (NM_021128, intron 1 of 1) AluJb|SINE|Alu 1060 NM_021128 5441 Hs.441072 NM_021128 ENSG00000177700 POLR2L RBP10|RPABC5|RPB10|RPB10beta|RPB7.6|hRPB7.6 RNA polymerase II subunit L protein-coding 1.887 1.900 6.539 0.733 1.206 0.480 1.374 1.939 0.314 0.598 0.251 2.250 1.920 2.006 0.074 2.977 3.951 2.187 3.453 3.296 3.660 1.653 1.222 2.515 2.562 1.027 2.224 1.380 2.035 2.126 1.936 2.468 3.565 1.370 1.619 1.154 1.266 1.136 0.587 0.522 1.788 0.341 0.326 1.374 2.250 0.252 0.629 0.446 0.384 1976 chr5 56746262 56755503 + 0 NA Intergenic Intergenic 27754 NM_001017992 345651 Hs.482167 NM_001017992 ENSG00000169067 ACTBL2 ACT actin, beta like 2 protein-coding nan nan 0.753 0.044 2.203 1.185 0.207 1.596 0.070 0.035 0.097 0.013 1.294 0.092 0.103 0.121 0.076 3.024 10.622 0.152 0.174 nan 0.076 0.129 0.177 1.217 1.496 0.129 0.149 nan 0.301 0.043 0.104 0.450 1.040 0.194 0.563 0.608 0.615 0.137 0.097 0.144 0.095 0.207 0.013 0.062 0.011 0.146 2519 chr9 77193657 77200500 + 0 NA intron (NM_006914, intron 1 of 9) intron (NM_006914, intron 1 of 9) -83609 NR_125791 103752585 Hs.635501 NR_125791 RORB-AS1 - RORB antisense RNA 1 ncRNA nan nan nan 0.102 0.384 0.054 0.056 0.076 0.024 0.069 0.085 0.139 0.283 0.096 0.069 0.287 0.141 6.961 nan 0.223 nan 0.098 0.008 0.701 0.767 0.083 0.188 0.216 0.246 0.239 0.093 0.104 0.194 0.048 0.093 0.188 0.458 0.858 0.838 0.008 0.091 0.028 0.056 0.139 0.029 0.029 0.111 2506 chr9 36934716 36941941 + 0 NA intron (NR_104000, intron 6 of 9) intron (NR_104000, intron 6 of 9) -44800 NR_039687 100616456 NR_039687 ENSG00000265368 MIR4476 mir-4476 microRNA 4476 ncRNA 1.172 nan 3.009 0.072 1.041 0.553 0.442 0.112 0.067 1.532 0.811 1.060 0.427 0.076 0.120 0.192 0.317 0.192 0.324 0.862 1.391 3.135 0.960 0.145 0.189 0.641 1.061 0.282 0.666 0.435 0.278 0.291 0.510 7.710 8.172 0.580 1.972 0.910 0.756 0.046 0.171 3.459 0.177 0.442 1.060 0.034 0.014 0.111 0.512 992 chr16 87955743 87991327 + 0 NA Intergenic (TAGA)n|Simple_repeat|Simple_repeat -3423 NM_001739 763 Hs.177446 NM_001739 ENSG00000174990 CA5A CA5|CA5AD|CAV|CAVA|GS1-21A4.1 carbonic anhydrase 5A protein-coding nan 1.933 1.704 3.013 2.353 1.172 3.114 0.379 0.117 0.843 0.500 2.395 4.137 0.561 0.083 1.322 1.432 1.031 1.817 4.748 3.934 5.704 2.493 2.011 2.157 0.618 0.933 3.010 4.275 2.736 3.054 1.037 1.394 2.197 2.269 1.277 1.350 3.273 1.766 1.510 1.804 0.468 0.696 3.114 2.395 0.617 3.936 0.426 0.342 2060 chr6 6878180 6888591 + 0 NA Intergenic L2c|LINE|L2 -224445 NM_001168344 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 0.938 0.839 1.489 0.411 0.339 0.265 0.234 0.102 0.096 0.136 0.102 0.934 0.429 0.083 0.110 1.264 2.249 0.452 0.433 0.467 0.531 0.885 0.470 0.623 0.534 0.274 0.388 1.701 1.437 0.489 0.222 0.690 0.820 0.177 0.239 0.394 0.616 0.507 0.540 0.086 0.630 0.018 0.200 0.234 0.934 0.038 4.478 0.493 0.153 1150 chr18 3441763 3467179 + 0 NA intron (NM_173211, intron 1 of 2) intron (NM_173211, intron 1 of 2) 699 NM_173211 7050 Hs.373550 NM_003244 ENSG00000177426 TGIF1 HPE4|TGIF TGFB induced factor homeobox 1 protein-coding 2.814 3.127 3.594 1.384 0.877 0.492 0.481 2.424 0.253 0.913 0.534 2.719 nan 7.241 0.249 0.861 1.181 4.163 7.484 5.326 4.332 nan 0.190 3.049 3.039 0.928 nan 4.064 5.636 nan 0.884 0.902 2.178 4.263 4.886 1.689 nan nan 1.473 3.700 2.031 0.810 1.713 0.481 2.719 0.436 1.225 1.133 1.245 584 chr12 18293476 18306797 + 0 NA Intergenic Intergenic -57009 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 0.802 5.577 0.824 0.401 0.277 0.205 0.459 0.147 0.069 0.130 0.148 0.027 0.937 0.049 0.118 0.187 0.121 0.333 0.528 nan 0.560 0.715 0.263 0.222 0.252 0.569 0.749 0.410 0.434 0.405 0.126 0.101 0.211 0.308 0.339 0.420 0.900 0.423 0.310 0.197 0.046 0.051 0.246 0.459 0.027 0.023 0.037 0.092 525 chr11 119223028 119253237 + 0 NA intron (NM_001243759, intron 1 of 11) intron (NM_001243759, intron 1 of 11) -3240 NM_171997 9099 Hs.524085 NM_004205 ENSG00000036672 USP2 UBP41|USP9 ubiquitin specific peptidase 2 protein-coding 1.379 1.359 1.350 0.484 0.627 0.341 0.723 0.175 0.079 0.488 0.351 0.621 1.536 0.361 0.090 0.832 nan 0.862 1.234 1.100 1.147 2.488 1.011 0.619 0.736 1.474 nan 2.114 2.725 2.180 1.982 1.824 2.458 1.273 1.094 1.774 4.212 1.546 0.971 1.378 0.639 0.139 0.245 0.723 0.621 0.341 0.396 1.171 1.102 1147 chr18 922627 937225 + 0 NA Intergenic Intergenic 24729 NM_001117 116 Hs.531719 NM_001117 ENSG00000141433 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 protein-coding 1.102 1.913 0.838 1.965 0.213 0.209 0.077 0.107 0.076 0.172 0.158 0.433 nan 0.022 0.105 0.336 0.132 0.179 0.228 1.041 0.986 nan 0.972 0.207 0.153 0.250 nan 2.552 2.531 nan 0.247 0.038 0.077 0.405 0.620 0.212 nan nan 1.373 6.869 0.736 0.072 0.065 0.077 0.433 0.060 0.587 0.007 0.075 2328 chr7 141664730 141677078 + 0 NA Intergenic L1MEf|LINE|L1 2669 NM_176817 5726 Hs.647085 NM_176817 ENSG00000257138 TAS2R38 PTC|T2R38|T2R61 taste 2 receptor member 38 protein-coding 0.696 0.514 0.813 0.164 0.163 0.092 0.155 0.066 0.065 0.203 0.196 0.116 0.232 0.052 0.166 0.671 0.403 0.227 0.370 0.172 0.165 0.197 0.111 45.747 50.015 0.160 0.220 0.170 0.241 0.397 0.305 0.217 0.409 0.429 0.352 0.166 0.342 1.679 nan 0.050 0.152 0.047 0.064 0.155 0.116 0.047 0.049 0.071 0.030 1414 chr2 17969571 17982722 + 0 NA Intergenic Intergenic -21640 NM_001105569 343930 Hs.705359 NM_001105569 ENSG00000151379 MSGN1 MSOG|pMsgn1 mesogenin 1 protein-coding 1.150 0.620 0.781 0.087 0.222 0.136 0.437 0.103 0.098 0.430 0.174 0.105 0.480 0.069 0.120 0.397 0.388 0.227 0.490 0.512 0.468 0.710 0.217 0.265 0.332 0.389 0.726 0.499 nan 1.021 0.709 0.228 0.521 0.051 0.100 0.382 nan 3.152 1.817 0.669 0.162 0.028 0.267 0.437 0.105 0.346 0.031 0.231 0.297 1095 chr17 49229760 49236614 + 0 NA intron (NM_001018136, intron 2 of 7) intron (NM_001018136, intron 2 of 7) 2267 NM_000269 4830 Hs.463456 NM_000269 ENSG00000239672 NME1 AWD|GAAD|NB|NBS|NDKA|NDPK-A|NDPKA|NM23|NM23-H1 NME/NM23 nucleoside diphosphate kinase 1 protein-coding 3.885 1.644 nan 1.814 1.861 1.066 1.394 1.193 0.117 1.227 0.893 1.828 2.481 2.479 0.132 3.101 3.067 2.131 2.873 4.063 nan 3.885 1.403 7.046 7.411 2.621 3.806 5.154 nan 9.415 10.724 2.121 4.003 3.707 3.370 4.056 6.954 2.661 1.769 0.826 1.285 0.415 1.191 1.394 1.828 1.246 1.356 1.027 1.936 2280 chr7 74055118 74078024 + 0 NA Intergenic AluSg|SINE|Alu -5420 NM_033000 2969 Hs.647041 NM_001518 ENSG00000263001 GTF2I BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6 general transcription factor IIi protein-coding nan 1.473 1.978 1.769 1.717 1.218 2.148 1.740 0.624 1.197 0.711 2.232 2.424 2.998 0.239 3.701 3.871 2.842 nan 2.972 3.048 2.041 0.866 2.836 2.973 0.857 nan 2.730 nan 3.501 3.190 1.936 3.471 2.313 1.942 3.610 5.198 1.810 1.202 1.643 2.249 0.567 2.499 2.148 2.232 0.602 0.778 1.693 1.684 265 chr1 202774365 202781138 + 0 NA 5' UTR (NM_001314042, exon 1 of 28) 5' UTR (NM_001314042, exon 1 of 28) 847 NM_001314042 10765 Hs.18891 NM_006618 ENSG00000117139 KDM5B CT31|JARID1B|PLU-1|PLU1|PPP1R98|PUT1|RBBP2H1A|RBP2-H1 lysine demethylase 5B protein-coding 4.929 3.745 3.978 3.233 4.791 2.714 4.774 1.839 0.259 3.715 1.371 4.727 10.399 3.660 0.203 2.283 3.516 7.453 9.481 7.715 6.953 7.945 2.757 nan nan 3.357 4.098 6.631 9.033 3.647 3.802 1.467 3.951 1.819 2.067 3.395 5.114 2.822 1.621 4.713 8.519 0.339 1.751 4.774 4.727 0.927 3.292 1.932 1.048 1709 chr22 24107063 24121146 + 0 NA promoter-TSS (NM_005940) promoter-TSS (NM_005940) -902 NR_133013 4320 Hs.143751 NM_005940 ENSG00000099953 MMP11 SL-3|ST3|STMY3 matrix metallopeptidase 11 protein-coding 1.559 nan 1.521 1.239 1.005 0.539 0.806 0.433 0.284 0.846 0.292 2.401 4.665 0.757 0.070 2.372 2.433 1.517 2.022 2.790 2.221 3.552 1.168 2.466 2.749 1.380 2.230 2.109 2.659 2.560 2.626 0.976 1.280 2.115 2.333 1.542 2.381 3.533 1.764 0.499 1.565 0.354 0.913 0.806 2.401 1.133 1.037 0.540 0.750 1142 chr17 80396552 80422064 + 0 NA promoter-TSS (NM_001033046) promoter-TSS (NM_001033046) -601 NR_036518 79415 Hs.163113 NM_001033046 ENSG00000178927 C17orf62 - chromosome 17 open reading frame 62 protein-coding 2.034 2.137 1.553 2.007 3.275 1.629 1.465 1.141 0.232 1.112 0.523 3.224 3.725 1.093 0.126 2.785 nan 1.384 2.175 nan 3.478 3.250 1.350 2.443 2.522 1.299 1.867 3.083 6.381 0.806 0.946 1.097 1.752 1.418 1.541 1.464 1.828 1.615 0.987 1.308 2.282 0.272 0.575 1.465 3.224 0.363 1.753 0.376 0.577 2195 chr6 157253311 157265935 + 0 NA intron (NM_020732, intron 5 of 19) intron (NM_020732, intron 5 of 19) -158758 NR_039676 100616154 NR_039676 ENSG00000271899 MIR4466 mir-4466 microRNA 4466 ncRNA nan 1.013 1.533 0.982 0.771 0.508 0.461 0.163 0.114 0.544 0.456 1.040 2.779 0.098 0.105 1.958 2.699 0.918 2.086 1.545 nan 6.135 2.483 0.499 0.656 0.584 0.671 1.528 1.497 1.109 0.956 0.544 1.167 1.469 1.818 0.431 nan 0.746 0.440 1.180 0.590 0.308 0.554 0.461 1.040 0.072 0.066 0.704 0.246 2585 chrX 24162909 24173417 + 0 NA promoter-TSS (NR_046657) intron (NM_001178085, intron 1 of 10) 309 NM_003410 7543 Hs.336681 NM_003410 ENSG00000005889 ZFX ZNF926 zinc finger protein, X-linked protein-coding 2.914 2.480 2.233 1.875 1.934 1.116 1.875 3.414 0.390 1.501 0.846 2.321 3.574 2.018 0.074 1.426 1.655 6.272 10.154 4.642 5.579 2.382 2.081 10.780 10.879 1.516 1.987 3.577 6.692 5.182 4.769 3.276 5.330 2.200 1.911 5.411 4.050 1.221 0.756 0.743 2.167 0.473 1.723 1.875 2.321 0.415 1.000 1.093 1.734 1616 chr20 43949325 43977649 + 0 NA intron (NM_002999, intron 2 of 4) MIRb|SINE|MIR 13577 NM_002999 6385 Hs.632267 NM_002999 ENSG00000124145 SDC4 SYND4 syndecan 4 protein-coding nan nan 2.416 1.394 0.585 0.283 0.458 1.240 0.164 0.371 0.192 1.645 3.336 0.503 0.133 0.664 0.928 0.992 1.814 0.674 0.763 nan 0.522 0.823 0.836 0.299 0.487 2.332 2.921 nan 0.683 0.974 1.540 0.846 1.055 1.624 5.646 0.544 0.369 0.075 0.213 0.301 0.070 0.458 1.645 0.058 0.158 0.977 1.776 1624 chr20 48803611 48812635 + 0 NA exon (NM_001285878, exon 1 of 1) exon (NM_001285878, exon 1 of 1) 483 NR_125739 101927559 Hs.442486 NR_125739 ENSG00000277449 CEBPB-AS1 - CEBPB antisense RNA 1 ncRNA nan nan 2.965 5.235 3.727 1.970 2.589 5.164 0.251 2.165 0.507 3.134 10.980 5.562 0.150 3.693 7.566 2.011 3.936 1.983 1.763 6.434 2.806 10.387 9.970 2.157 2.869 5.561 6.119 nan 4.810 8.119 8.884 1.506 1.974 2.767 5.465 1.525 1.031 2.470 5.496 0.287 3.366 2.589 3.134 0.949 2.355 2.083 0.985 1599 chr20 30269457 30314145 + 0 NA intron (NR_134257, intron 1 of 2) AluSx|SINE|Alu -17509 NR_131907 103021294 NR_131907 ENSG00000281376 ABALON INXS apoptotic BCL2L1-antisense long non-coding RNA ncRNA 1.997 4.252 1.785 3.876 2.963 1.598 29.204 1.820 0.326 1.814 0.978 3.565 6.998 1.096 0.117 1.992 2.738 1.536 3.872 3.909 nan 6.062 2.350 3.987 4.297 2.120 2.767 5.553 6.658 2.998 2.465 1.291 2.207 2.632 3.157 1.324 nan 1.557 0.806 5.575 3.473 1.242 2.003 29.204 3.565 1.354 1.007 1.726 1.284 1973 chr5 51278649 51314898 + 0 NA Intergenic Intergenic -617607 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA nan nan 0.635 1.079 4.227 2.255 1.897 0.072 0.084 1.929 1.142 1.761 1.885 0.042 0.113 0.239 0.160 4.639 2.545 4.458 5.299 nan 1.337 0.076 0.060 0.692 0.900 0.492 0.518 nan 0.486 0.072 0.104 2.207 3.090 0.376 0.965 1.950 0.805 2.699 1.136 0.704 0.300 1.897 1.761 0.029 0.039 0.024 0.088 1439 chr2 48420961 48444303 + 0 NA Intergenic Intergenic -109163 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 1.426 nan 1.596 0.150 0.342 0.124 0.231 0.137 0.041 0.155 0.189 0.148 0.400 0.042 0.129 0.850 1.498 0.947 0.721 nan 0.679 2.009 0.608 0.381 0.474 1.611 1.783 0.339 0.445 2.085 1.774 0.217 0.281 0.458 0.415 1.508 nan nan 0.558 0.045 0.118 0.113 0.140 0.231 0.148 0.494 0.018 0.051 1.080 914 chr16 691006 700101 + 0 NA intron (NR_138611, intron 1 of 3) AluSx1|SINE|Alu 2499 NR_138611 84331 Hs.706105 NM_032371 ENSG00000172366 MCRIP2 C16orf14|FAM195A|c349E10.1 MAPK regulated corepressor interacting protein 2 protein-coding 2.574 nan 2.204 3.320 2.302 0.953 3.039 0.912 0.158 1.871 0.713 2.737 5.773 1.164 0.072 3.226 3.368 1.702 2.640 2.492 2.635 nan 2.613 4.928 5.232 2.314 nan 3.297 5.016 3.085 3.277 1.569 2.720 4.372 4.321 2.037 2.093 2.104 1.241 1.908 5.945 0.848 0.596 3.039 2.737 1.763 1.981 0.764 0.701 2462 chr8 146124220 146128687 + 0 NA intron (NM_021061, intron 1 of 5) CpG 393 NM_021061 58500 Hs.532277 NM_021061 ENSG00000196150 ZNF250 ZFP647|ZNF647 zinc finger protein 250 protein-coding 8.358 3.773 nan 6.371 5.786 3.515 2.096 2.481 0.541 1.914 0.969 7.810 17.676 2.448 0.096 3.026 3.834 4.921 5.715 12.615 9.348 nan 3.237 11.341 12.283 2.437 3.261 3.363 5.636 4.537 6.255 3.034 6.117 4.978 3.902 4.767 4.688 3.305 1.927 4.628 8.528 0.811 2.074 2.096 7.810 1.476 5.010 2.094 1.603 1634 chr20 52251486 52424172 + 0 NA Intergenic Intergenic 112936 NR_134576 105372672 Hs.259350 NR_134576 ENSG00000235415 LOC105372672 - uncharacterized LOC105372672 ncRNA 1.225 1.573 1.039 0.216 0.416 0.244 0.626 1.310 0.415 0.067 0.079 0.099 0.323 6.258 0.299 0.998 nan 1.096 3.396 0.819 0.822 0.172 0.072 0.344 0.344 0.710 0.972 0.645 0.860 0.987 0.702 0.503 0.841 0.039 0.043 0.590 1.458 0.217 0.333 0.435 0.523 0.015 0.350 0.626 0.099 0.307 0.068 0.571 0.292 1123 chr17 76833574 76838513 + 0 NA intron (NM_001321291, intron 1 of 20) intron (NM_001321291, intron 1 of 20) 566 NM_001321291 57602 Hs.464243 NM_025090 ENSG00000055483 USP36 DUB1 ubiquitin specific peptidase 36 protein-coding 5.770 4.687 4.307 5.798 4.942 2.777 5.855 3.422 0.442 3.511 1.289 4.337 7.595 2.668 0.131 7.452 6.994 4.853 7.604 8.755 7.026 8.372 5.079 12.599 12.499 nan 5.175 7.298 10.693 8.784 10.871 2.861 5.308 6.327 6.603 5.394 4.719 nan 2.569 2.115 4.374 0.870 2.776 5.855 4.337 1.289 6.231 1.232 1.627 156 chr1 109355817 109360161 + 0 NA TTS (NM_152763) TTS (NM_152763) 41737 NM_152763 254268 Hs.729441 NM_152763 ENSG00000162641 AKNAD1 C1orf62 AKNA domain containing 1 protein-coding 5.331 4.525 3.060 1.753 0.445 0.404 2.569 6.317 0.467 0.322 0.147 3.632 0.648 0.125 0.073 0.752 1.022 0.450 0.998 1.333 nan 9.800 9.842 0.324 0.368 6.109 6.635 nan nan 2.719 2.412 0.272 0.620 7.193 6.850 1.488 3.303 1.417 0.862 1.637 2.207 0.792 0.385 2.569 3.632 0.771 1.054 0.361 0.412 967 chr16 49574981 49603773 + 0 NA intron (NM_001330533, intron 3 of 5) MIR|SINE|MIR -36881 NR_144553 1596 Hs.684517 NR_144553 ADAM3B CYRN2 ADAM metallopeptidase domain 3B (pseudogene) pseudo 1.074 1.849 1.109 0.076 0.390 0.167 1.617 0.065 0.045 0.037 0.038 0.093 0.175 0.034 0.064 0.332 0.379 0.064 0.080 0.914 0.969 3.259 0.859 0.094 0.118 0.940 1.156 0.486 0.687 5.362 6.347 0.209 0.362 1.189 1.061 0.805 1.226 0.932 0.623 0.014 0.623 0.591 0.173 1.617 0.093 2.209 0.092 0.141 0.407 1574 chr20 5097627 5101593 + 0 NA promoter-TSS (NR_028370) promoter-TSS (NR_028370) -622 NR_028370 100302739 Hs.744934 NR_028370 PCNA-AS1 PCNA-AS|PCNAAS PCNA antisense RNA 1 ncRNA 9.276 7.900 4.337 8.512 5.888 3.278 3.419 2.038 0.075 3.414 1.360 4.891 15.290 2.396 0.174 13.988 12.051 7.220 8.729 13.356 10.882 11.325 8.643 11.104 10.632 6.081 7.119 12.601 17.948 14.261 16.041 7.303 12.788 10.586 11.186 11.303 8.791 4.288 2.316 4.718 6.127 1.750 2.114 3.419 4.891 1.447 3.866 2.321 2.869 737 chr13 107857497 107871572 + 0 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) 319062 NR_031671 100302286 NR_031671 ENSG00000221650 MIR1267 MIRN1267|hsa-mir-1267 microRNA 1267 ncRNA 0.740 3.170 0.708 2.079 5.060 2.884 1.209 0.059 0.113 1.881 0.877 4.472 5.260 0.078 0.841 0.764 2.452 1.190 3.112 3.508 0.473 0.170 0.092 0.078 0.356 nan 4.099 5.533 0.459 0.179 0.137 0.199 2.263 1.917 0.204 nan 1.167 0.637 0.844 5.706 0.161 0.129 1.209 4.472 0.007 3.329 0.036 0.354 233 chr1 165250163 165260126 + 0 NA intron (NM_177398, intron 3 of 8) intron (NM_177398, intron 3 of 8) 70334 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 2.387 nan 1.653 0.524 0.704 0.410 2.361 0.104 0.064 2.183 0.849 0.527 1.551 0.011 0.100 0.776 0.668 0.402 1.496 1.386 nan 0.840 0.208 0.136 0.143 0.565 1.041 1.406 nan 4.484 4.573 0.551 0.631 7.644 6.663 1.757 4.577 2.210 1.241 0.475 0.535 2.913 0.415 2.361 0.527 0.726 1.053 0.253 2.123 577 chr12 12711380 12716835 + 0 NA intron (NM_030640, intron 1 of 6) intron (NM_030640, intron 1 of 6) 1341 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 6.198 4.247 5.363 5.537 9.281 4.950 3.444 1.584 0.238 6.489 2.291 6.481 10.462 4.564 0.137 1.783 2.028 6.867 10.414 nan 6.128 8.411 6.914 12.746 13.616 6.379 8.215 6.343 12.895 1.718 1.379 2.474 4.415 6.327 6.253 3.161 3.086 3.923 2.174 2.373 5.074 1.045 2.446 3.444 6.481 0.413 1.711 1.200 0.736 1183 chr18 42582093 42599929 + 0 NA intron (NM_015559, intron 4 of 5) intron (NM_015559, intron 4 of 5) -40880 NR_036203 100422829 NR_036203 ENSG00000265957 MIR4319 - microRNA 4319 ncRNA nan 1.172 1.253 0.515 0.765 0.255 3.539 0.567 0.063 0.624 0.441 1.231 1.758 0.018 0.065 0.513 0.481 0.249 0.630 1.478 1.410 1.792 0.640 0.057 0.068 0.994 1.413 0.472 0.609 0.424 0.232 0.343 0.543 1.593 1.821 0.183 nan 4.105 2.588 2.176 0.359 0.300 0.371 3.539 1.231 0.315 0.366 0.303 0.084 1542 chr2 219743207 219762937 + 0 NA intron (NM_025216, intron 2 of 3) intron (NM_025216, intron 2 of 3) 7817 NM_025216 80326 Hs.121540 NM_025216 ENSG00000135925 WNT10A OODD|SSPS|STHAG4 Wnt family member 10A protein-coding nan 0.909 nan 0.129 0.503 0.189 1.564 0.118 0.040 0.203 0.219 0.451 2.955 2.569 0.137 2.285 4.910 0.480 1.103 0.754 0.588 0.684 0.131 0.254 0.246 0.483 0.637 0.626 nan 1.000 0.834 0.503 0.878 0.432 0.384 0.862 2.020 0.551 0.430 0.501 0.104 0.144 0.990 1.564 0.451 0.319 0.755 0.255 0.394 1668 chr21 30443810 30451064 + 0 NA Intergenic MSTA|LTR|ERVL-MaLR -1319 NM_001282909 10694 Hs.125113 NM_006585 ENSG00000156261 CCT8 C21orf112|Cctq|D21S246|PRED71 chaperonin containing TCP1 subunit 8 protein-coding 3.813 1.959 5.030 3.682 2.142 1.257 2.495 1.382 0.174 1.290 0.886 1.746 6.983 1.793 0.120 3.799 4.126 3.292 4.254 5.294 4.975 6.148 2.622 9.091 9.488 3.225 4.231 6.998 9.904 9.185 9.456 2.170 4.416 6.287 6.176 4.012 4.144 nan 2.976 3.002 4.757 1.298 1.084 2.495 1.746 1.061 2.764 0.821 1.253 1345 chr19 47606293 47635808 + 0 NA Intergenic AluSx3|SINE|Alu -4041 NM_015168 23211 Hs.104661 NM_015168 ENSG00000130749 ZC3H4 C19orf7 zinc finger CCCH-type containing 4 protein-coding 3.799 2.330 3.022 2.067 2.959 1.511 2.650 1.726 0.424 1.680 0.742 3.241 3.414 2.739 0.179 3.383 3.021 3.601 4.817 5.237 5.119 5.225 3.310 9.343 10.386 3.153 4.112 3.979 6.126 3.536 3.211 4.423 5.918 3.123 3.774 4.192 4.827 2.525 1.259 3.037 3.973 0.818 1.263 2.650 3.241 0.902 1.232 3.821 1.703 1341 chr19 47273220 47302028 + 0 NA intron (NM_001145145, intron 1 of 6) MIR|SINE|MIR 510 NM_001145145 6510 Hs.631582 NM_005628 ENSG00000105281 SLC1A5 AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC solute carrier family 1 member 5 protein-coding 2.362 1.945 1.507 3.335 0.898 0.517 1.345 1.320 0.308 0.703 0.219 1.617 3.084 2.262 0.172 1.218 1.498 0.610 0.971 1.411 1.474 1.491 0.545 3.866 4.122 1.649 2.175 3.813 4.141 1.452 1.699 1.176 2.013 0.298 0.485 1.618 3.812 1.315 0.781 2.631 2.711 0.068 0.569 1.345 1.617 0.445 0.739 0.706 0.873 2058 chr6 5604677 5616933 + 0 NA intron (NM_006567, intron 5 of 6) MER2|DNA|TcMar-Tigger 84700 NR_110842 101927950 Hs.571136 NR_110842 ENSG00000270174 LOC101927950 - uncharacterized LOC101927950 ncRNA 1.061 0.743 1.028 0.558 0.386 0.274 0.189 0.157 0.118 0.399 0.287 0.329 0.159 0.071 0.080 0.382 0.324 0.203 0.269 0.414 0.467 3.334 0.802 0.269 0.224 0.489 0.661 1.122 0.925 0.478 0.156 0.121 0.210 1.040 1.215 0.335 0.996 1.756 0.993 0.018 0.094 0.156 0.051 0.189 0.329 0.072 2.988 0.024 0.107 1223 chr18 60920322 60941323 + 0 NA intron (NM_000633, intron 2 of 2) intron (NM_000633, intron 2 of 2) 55791 NM_000633 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2, apoptosis regulator protein-coding 0.897 1.239 3.338 2.290 2.453 1.347 0.432 0.183 0.092 0.812 0.294 3.017 4.188 0.036 0.124 1.770 2.679 3.394 3.340 7.484 7.084 4.091 1.748 1.072 nan 0.305 nan 4.020 4.085 0.830 0.584 1.997 2.539 4.913 6.400 0.150 0.188 6.121 3.470 3.730 0.754 1.106 0.665 0.432 3.017 0.264 0.430 2.140 0.036 1897 chr4 57841404 57846918 + 0 NA promoter-TSS (NM_000938) promoter-TSS (NM_000938) -335 NM_032313 84273 Hs.8715 NM_032313 ENSG00000084092 NOA1 C4orf14|MTG3|hAtNOS1|hNOA1|mAtNOS1 nitric oxide associated 1 protein-coding nan 2.036 3.754 7.013 4.034 2.413 2.819 1.537 0.496 2.269 1.432 2.974 6.353 2.025 0.183 4.632 5.635 4.975 8.328 4.960 3.714 8.765 3.124 10.525 10.532 4.626 6.190 8.768 14.151 5.906 7.366 2.304 5.367 3.632 3.558 3.723 4.986 9.255 5.139 2.228 4.302 0.503 2.486 2.819 2.974 0.510 3.297 1.297 1.324 1488 chr2 160466084 160476424 + 0 NA promoter-TSS (NR_110587) promoter-TSS (NR_110587) -551 NR_110588 643072 Hs.632541 NR_110587 LOC643072 - uncharacterized LOC643072 ncRNA 4.675 2.738 nan 3.519 6.656 3.422 2.573 2.424 0.136 2.424 1.818 3.809 4.792 2.393 0.089 4.011 4.495 5.858 7.423 5.899 5.598 4.062 1.636 10.194 10.689 4.526 4.942 4.523 7.146 9.316 9.163 3.104 4.400 4.434 5.865 8.329 7.729 2.616 1.356 3.173 1.904 0.967 1.816 2.573 3.809 1.050 0.953 1.913 3.221 2156 chr6 80014242 80025651 + 0 NA non-coding (NR_130915, exon 3 of 3) non-coding (NR_130915, exon 3 of 3) 3155 NR_130915 80078 NR_130915 LCAL1 onco-lncRNA-27 lung cancer associated lncRNA 1 ncRNA nan nan 2.194 3.313 0.322 0.084 0.294 0.091 0.099 0.097 0.037 0.261 0.871 0.057 0.090 0.743 0.548 1.003 1.798 0.328 0.356 0.833 0.156 11.479 12.312 0.144 0.181 5.981 8.273 0.345 0.196 0.390 0.543 0.742 2.610 0.161 0.190 0.467 0.345 0.247 0.094 0.033 0.076 0.294 0.261 0.187 0.178 0.172 0.045 1983 chr5 59775458 59794620 + 0 NA intron (NR_024617, intron 1 of 3) intron (NR_024617, intron 1 of 3) -1114 NM_001165899 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding nan nan 0.857 0.070 0.163 0.147 0.148 0.106 0.092 0.098 0.089 0.169 0.311 0.051 0.099 0.218 0.151 0.397 0.599 0.295 0.356 nan 0.107 0.162 0.147 3.537 4.117 0.529 0.665 nan 0.117 0.074 0.240 0.088 0.127 0.189 0.338 0.199 0.286 0.655 0.092 0.030 0.141 0.148 0.169 0.005 0.312 0.077 0.078 2494 chr9 16611427 16734099 + 0 NA intron (NM_001317940, intron 2 of 5) intron (NM_001317940, intron 2 of 5) 198023 NM_001317939 54796 Hs.656581 NM_017637 ENSG00000173068 BNC2 BSN2 basonuclin 2 protein-coding nan nan 0.864 0.206 0.265 0.145 0.496 0.780 0.124 0.102 0.147 0.043 0.618 2.911 0.120 0.236 0.164 0.340 0.537 0.826 0.847 0.151 0.105 0.138 0.135 4.327 4.873 0.107 0.122 0.448 0.265 1.206 1.972 1.572 1.961 0.227 0.431 0.807 0.852 0.036 0.121 0.613 0.145 0.496 0.043 0.216 0.088 1.764 0.103 1011 chr17 7379117 7391434 + 0 NA intron (NM_001102614, intron 1 of 1) intron (NM_001102614, intron 1 of 1) 554 NM_001102614 643664 Hs.632234 NM_001102614 ENSG00000259224 SLC35G6 AMAC1L3|TMEM21B solute carrier family 35 member G6 protein-coding 3.982 2.228 2.601 1.645 2.908 1.795 2.444 1.749 0.354 1.267 0.573 4.089 4.929 10.503 0.489 5.341 6.272 4.175 6.025 7.570 6.899 5.094 3.245 5.397 5.656 3.407 4.098 6.112 7.712 2.804 2.754 3.317 4.452 2.158 2.269 5.387 8.960 1.537 0.932 3.341 2.198 0.341 0.956 2.444 4.089 0.820 3.825 1.716 4.260 1450 chr2 70331010 70371630 + 0 NA non-coding (NR_024444, exon 2 of 2) non-coding (NR_024444, exon 2 of 2) 1128 NR_024444 100133985 Hs.135528 NR_024444 ENSG00000231327 LINC01816 - long intergenic non-protein coding RNA 1816 ncRNA nan nan 2.893 2.505 3.757 1.916 2.589 1.625 0.487 0.716 0.382 2.991 3.729 2.160 0.201 2.851 2.553 1.978 3.297 4.210 4.045 3.581 1.924 4.357 4.535 1.844 2.214 4.964 7.210 2.215 1.750 3.371 4.206 1.629 1.799 2.318 3.847 nan 0.789 2.387 2.749 0.280 1.005 2.589 2.991 1.259 1.419 3.183 0.710 1160 chr18 22209033 22241787 + 0 NA intron (NR_040033, intron 1 of 2) intron (NR_040033, intron 1 of 2) 17264 NR_040033 729950 Hs.585850 NR_040033 ENSG00000265485 LINC01915 - long intergenic non-protein coding RNA 1915 ncRNA 1.919 1.021 1.828 0.107 0.657 0.416 0.832 0.073 0.058 0.076 0.119 0.339 0.853 0.069 0.082 1.235 1.555 0.224 nan 3.506 3.875 0.254 0.169 0.113 0.131 0.841 1.084 0.430 0.398 2.877 3.115 0.193 0.227 0.617 0.674 2.006 7.247 1.268 1.165 1.402 0.179 0.160 0.288 0.832 0.339 0.404 0.204 0.051 4.598 675 chr12 122109365 122135307 + 0 NA Intergenic AluSx1|SINE|Alu -14776 NM_173855 283385 Hs.434154 NM_173855 ENSG00000139714 MORN3 - MORN repeat containing 3 protein-coding 1.327 1.464 1.492 1.053 0.996 0.556 1.113 0.252 0.245 0.357 0.357 0.885 1.530 0.482 0.141 1.119 1.591 1.706 1.748 1.373 1.273 nan 1.208 1.038 1.115 0.636 1.105 2.999 3.636 1.037 0.736 0.617 0.728 1.975 2.183 0.668 1.318 1.820 0.989 0.615 1.017 0.501 0.550 1.113 0.885 0.250 0.516 0.271 0.329 587 chr12 24607781 24664869 + 0 NA intron (NM_001261414, intron 1 of 16) intron (NM_001261414, intron 1 of 16) 79199 NM_001261414 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box 5 protein-coding nan nan nan 0.234 0.928 0.442 0.161 0.052 0.031 0.126 0.160 0.319 0.335 2.277 0.164 0.319 0.227 0.231 0.418 0.481 0.626 0.161 0.084 0.400 0.370 0.207 0.340 0.277 0.343 0.362 0.151 0.195 0.325 0.509 0.722 0.704 1.581 0.449 0.375 0.019 0.094 0.094 0.123 0.161 0.319 0.008 0.038 0.109 0.174 2371 chr8 61563318 61568377 + 0 NA Intergenic Intergenic -25477 NM_017780 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 8.310 2.877 9.430 5.331 4.238 2.084 3.214 0.423 0.076 3.218 1.662 6.668 7.816 2.478 0.085 2.507 3.766 2.104 3.336 14.097 11.041 7.761 2.309 2.356 2.545 2.330 nan 3.631 5.737 nan 9.313 1.991 4.332 9.340 9.528 4.443 5.777 5.267 2.883 1.618 6.298 2.543 2.279 3.214 6.668 1.247 5.763 1.237 1.888 1254 chr19 6048034 6076000 + 0 NA intron (NM_134433, intron 1 of 16) AluJb|SINE|Alu 48647 NM_000635 5990 Hs.465709 NM_000635 ENSG00000087903 RFX2 - regulatory factor X2 protein-coding 2.252 2.283 0.897 1.571 3.387 1.802 1.038 0.453 0.104 1.629 0.801 3.885 3.995 0.058 0.079 0.262 0.185 0.256 0.609 2.451 3.045 1.042 1.562 0.231 0.267 2.036 2.960 3.043 nan 1.062 0.757 0.123 0.212 1.685 0.997 0.190 0.207 3.667 2.277 0.515 0.551 0.224 0.023 1.038 3.885 0.446 1.437 0.014 0.088 1716 chr22 31736305 31744545 + 0 NA exon (NM_032050, exon 1 of 4) exon (NM_032050, exon 1 of 4) 1824 NM_032052 23598 Hs.731398 NM_014323 ENSG00000100105 PATZ1 MAZR|PATZ|RIAZ|ZBTB19|ZNF278|ZSG|dJ400N23 POZ/BTB and AT hook containing zinc finger 1 protein-coding nan 3.204 6.517 4.729 5.495 2.209 3.813 0.981 0.233 1.805 1.127 10.048 10.078 2.543 0.114 6.793 7.435 4.966 nan 9.220 7.931 3.544 1.290 5.944 5.632 2.958 nan 7.790 11.503 5.515 5.374 4.007 9.051 2.960 2.484 2.432 nan 1.966 0.874 3.687 2.099 0.875 4.793 3.813 10.048 1.237 2.152 3.371 1.181 2043 chr5 169573066 169592841 + 0 NA Intergenic Intergenic 43192 NR_108022 100507267 Hs.634846 NR_108022 LINC01187 CTB-27N1.1|KIDR long intergenic non-protein coding RNA 1187 ncRNA nan 0.702 0.566 0.044 0.127 0.065 0.071 0.163 0.033 0.008 0.074 0.054 0.401 0.121 0.088 0.403 0.339 12.986 10.383 0.199 0.268 0.110 0.054 0.952 0.949 0.126 0.227 0.285 0.437 0.634 0.539 0.186 0.637 0.108 0.152 0.131 0.188 0.508 0.368 0.026 0.094 0.009 0.016 0.071 0.054 0.078 0.030 0.140 0.122 1934 chr5 366608 432194 + 0 NA intron (NM_020731, intron 4 of 11) intron (NM_020731, intron 4 of 11) 43874 NR_126522 116349 Hs.446702 NM_138464 ENSG00000221990 EXOC3-AS1 C5orf55 EXOC3 antisense RNA 1 ncRNA 0.809 2.021 2.817 0.928 1.499 0.801 4.227 0.573 0.180 2.965 1.557 2.367 1.617 0.114 0.109 2.117 2.901 1.827 nan 6.681 6.824 4.589 2.139 0.691 0.692 0.377 0.685 nan 4.652 nan 1.432 0.866 1.091 0.856 0.641 0.088 0.121 3.859 nan 2.716 3.876 0.103 0.078 4.227 2.367 1.349 3.342 0.361 0.021 316 chr1 244208062 244230466 + 0 NA 3' UTR (NM_001278196, exon 2 of 2) 3' UTR (NM_001278196, exon 2 of 2) 2757 NM_006352 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding nan 1.782 nan 1.942 1.623 0.944 1.083 3.672 0.337 1.087 0.467 1.977 2.019 0.368 0.101 0.765 1.155 2.320 1.873 4.839 4.125 2.713 0.668 1.102 1.125 5.213 6.767 1.402 1.860 7.308 9.684 0.383 1.202 2.881 2.475 4.177 6.140 1.167 0.833 0.196 0.514 0.655 1.822 1.083 1.977 0.561 1.275 0.470 0.868 1225 chr18 72599418 72618668 + 0 NA intron (NM_001146189, intron 6 of 6) intron (NM_001146189, intron 6 of 6) 266124 NM_001146190 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding nan nan 0.904 0.264 1.085 0.583 1.058 0.088 0.092 3.213 1.389 1.731 4.680 0.056 0.080 0.596 0.546 0.838 0.793 0.984 nan 1.307 0.417 0.446 0.439 0.336 0.566 3.491 nan 0.535 0.204 1.620 2.652 2.293 3.371 0.245 0.444 1.362 0.788 0.043 0.262 0.339 0.260 1.058 1.731 0.025 0.943 2.806 0.090 633 chr12 58738640 58753403 + 0 NA Intergenic Intergenic -239463 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA nan 0.793 0.668 1.405 0.362 0.229 0.377 0.424 0.121 0.694 0.484 0.294 0.387 0.022 0.089 nan 0.301 0.279 0.310 0.303 nan 6.746 2.222 0.307 0.347 0.349 nan 0.648 nan 0.420 0.168 0.108 0.295 0.294 0.224 0.248 0.441 2.509 1.349 0.019 0.060 0.078 0.059 0.377 0.294 0.105 0.048 0.053 0.208 1067 chr17 38374519 38402516 + 0 NA intron (NM_133264, intron 1 of 7) AluSz|SINE|Alu 12943 NM_133264 147179 Hs.421622 NM_133264 ENSG00000171475 WIPF2 WICH|WIRE WAS/WASL interacting protein family member 2 protein-coding nan 1.472 1.252 0.323 0.992 0.461 0.625 0.608 0.244 0.387 0.351 0.444 1.615 0.391 0.092 0.778 0.943 0.727 1.138 nan 0.959 1.508 1.220 1.801 1.936 0.971 1.508 1.143 1.740 nan 0.744 0.459 0.701 0.493 0.577 1.792 3.335 0.718 0.613 0.469 0.560 0.099 0.297 0.625 0.444 0.252 0.276 0.176 0.911 1284 chr19 31138839 31162605 + 0 NA Intergenic MSTA|LTR|ERVL-MaLR 287422 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 1.241 0.907 2.082 0.166 2.843 1.462 0.372 0.152 0.150 0.066 0.102 0.375 0.386 0.064 0.111 0.411 0.402 0.368 0.554 0.251 0.234 0.221 0.084 0.132 0.110 0.433 0.841 0.164 0.123 nan 0.105 0.794 0.740 0.037 0.082 0.514 1.808 0.582 0.461 3.194 0.146 0.020 0.066 0.372 0.375 0.313 0.047 0.126 0.270 2529 chr9 110044292 110048855 + 0 NA promoter-TSS (NM_001244713) promoter-TSS (NM_001244713) 239 NM_001244724 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 5.283 3.903 5.999 8.056 5.782 3.654 4.319 3.425 0.370 3.033 1.444 5.456 9.472 3.776 0.088 2.941 2.861 8.086 12.269 9.389 8.038 5.768 2.700 13.430 14.416 2.701 3.666 6.570 12.683 14.116 14.602 1.669 4.371 6.967 7.237 8.678 6.492 nan 1.471 1.631 2.489 1.903 3.386 4.319 5.456 1.336 2.634 1.293 1.982 2177 chr6 129952411 129969054 + 0 NA intron (NM_033515, intron 2 of 14) intron (NM_033515, intron 2 of 14) 70638 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 0.998 1.037 0.760 0.102 0.103 0.049 0.258 1.464 0.117 0.132 0.084 0.050 0.253 0.052 0.120 0.494 0.371 0.546 1.857 0.205 0.298 6.269 2.329 0.377 0.291 0.517 0.754 0.256 0.258 0.788 0.383 0.154 0.271 2.368 3.698 0.299 0.523 0.558 0.390 0.027 0.108 0.567 0.062 0.258 0.050 0.053 0.623 0.043 0.089 1579 chr20 15525237 15540008 + 0 NA intron (NM_080676, intron 8 of 16) intron (NM_080676, intron 8 of 16) 355118 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133 MACRO domain containing 2 protein-coding 0.982 nan 0.916 0.188 0.193 0.076 0.137 0.252 0.177 0.053 0.122 0.088 0.338 0.007 0.067 0.650 0.362 0.472 0.560 0.266 0.421 0.229 0.087 0.202 0.221 1.429 1.914 0.342 0.296 6.530 5.816 0.118 0.217 0.100 0.150 1.323 3.994 0.332 0.363 0.023 0.072 0.013 0.027 0.137 0.088 0.322 0.041 0.020 3.576 31 chr1 8927744 8966353 + 0 NA Intergenic AluJr|SINE|Alu -7897 NM_001428 2023 Hs.517145 NM_001428 ENSG00000074800 ENO1 ENO1L1|HEL-S-17|MPB1|NNE|PPH enolase 1 protein-coding 2.077 nan 1.945 2.994 1.391 0.811 1.317 1.836 0.670 0.650 0.496 0.376 1.831 0.776 0.120 1.085 1.405 1.674 4.193 2.748 2.399 0.954 0.362 2.658 2.742 2.230 nan nan 5.887 nan 2.988 0.913 1.746 0.814 0.790 1.829 1.864 1.002 0.724 0.855 0.898 0.183 0.538 1.317 0.376 0.306 1.007 0.600 0.904 2600 chrX 153143169 153177203 + 0 NA Intergenic Intergenic -7799 NR_027419 554 Hs.567240 NM_000054 ENSG00000126895 AVPR2 ADHR|DI1|DIR|DIR3|NDI|V2R arginine vasopressin receptor 2 protein-coding 1.576 0.804 1.181 0.187 1.013 0.480 0.953 0.046 0.052 0.138 0.104 0.622 0.989 0.054 0.054 1.028 2.133 0.169 0.251 1.313 1.328 0.773 0.252 0.175 0.183 0.341 0.555 0.225 0.353 3.185 3.325 0.448 0.624 0.331 0.382 0.562 1.167 0.469 0.352 0.668 2.095 0.093 0.378 0.953 0.622 0.639 0.227 0.338 0.232 539 chr11 129142176 129170300 + 0 NA Intergenic Intergenic -89643 NM_003658 8538 Hs.591944 NM_003658 ENSG00000043039 BARX2 - BARX homeobox 2 protein-coding 0.956 1.081 2.540 2.088 1.327 0.650 0.474 0.106 0.017 1.043 0.779 1.532 3.807 1.220 0.119 1.791 1.780 0.812 0.776 1.690 1.680 2.910 0.859 0.892 0.850 0.843 1.171 6.739 7.500 1.090 1.173 2.594 4.950 1.936 1.702 0.763 nan 2.278 1.185 0.458 0.656 0.373 0.181 0.474 1.532 0.117 1.682 3.131 0.210 1989 chr5 71101715 71110924 + 0 NA Intergenic Intergenic 91329 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 0.939 nan 0.773 0.104 2.712 1.152 0.279 0.146 0.105 0.258 0.253 0.078 0.532 0.078 0.186 0.226 0.184 0.189 0.332 0.271 0.307 nan 2.111 0.109 0.095 0.583 nan 0.313 0.285 0.505 0.264 0.130 0.208 2.472 2.608 0.260 0.890 1.167 0.699 0.079 0.117 0.423 0.042 0.279 0.078 0.011 0.210 0.032 0.223 1285 chr19 31173034 31188485 + 0 NA Intergenic Intergenic 317459 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 1.962 0.947 1.627 0.098 0.326 0.177 1.168 0.122 0.074 0.051 0.059 0.387 0.517 0.069 0.088 0.651 0.837 0.367 0.446 0.176 0.257 0.216 0.082 0.080 0.090 0.405 0.810 0.121 0.153 nan 0.151 0.342 0.403 0.046 0.128 2.689 6.745 0.439 0.553 0.286 0.075 0.012 0.115 1.168 0.387 0.529 0.052 0.083 2.643 552 chr12 6831849 6834685 + 0 NA promoter-TSS (NM_001164093) promoter-TSS (NM_001164093) 117 NM_001164095 50813 Hs.530823 NM_016319 ENSG00000111652 COPS7A CSN7|CSN7A|SGN7a COP9 signalosome subunit 7A protein-coding 4.208 nan 4.404 8.317 3.966 2.535 3.656 0.711 0.065 2.620 1.393 4.095 10.234 3.265 0.190 3.807 3.440 4.590 6.377 nan 7.595 17.656 6.656 9.110 8.930 7.698 8.564 6.588 7.759 6.498 6.507 3.463 4.000 5.309 5.126 7.230 10.470 3.072 1.614 2.649 2.862 0.376 2.233 3.656 4.095 8.260 1.994 1.769 3.165 1777 chr3 71347623 71360206 + 0 NA promoter-TSS (NM_001244812) promoter-TSS (NM_001244812) -3 NM_001244812 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 1.669 0.756 1.901 0.294 0.649 0.448 0.264 0.077 0.039 0.474 0.204 0.983 0.500 0.060 0.075 1.274 0.940 3.845 nan 0.784 0.876 0.805 0.451 1.314 1.282 0.087 0.154 0.953 1.453 11.655 10.938 0.362 0.855 0.273 0.277 0.283 nan 0.677 0.449 0.036 0.213 0.068 1.313 0.264 0.983 0.285 0.113 0.226 0.255 207 chr1 156250748 156254606 + 0 NA promoter-TSS (NR_026678) promoter-TSS (NR_026678) 4 NM_001323614 23381 Hs.516837 NM_015327 ENSG00000198952 SMG5 EST1B|LPTS-RP1|LPTSRP1|SMG-5 SMG5, nonsense mediated mRNA decay factor protein-coding 5.708 nan 5.331 3.686 3.928 1.843 3.735 3.038 0.291 3.429 1.831 3.873 25.096 4.162 0.184 6.458 6.754 8.831 11.664 7.299 nan 8.398 3.546 6.151 6.312 4.884 6.862 10.320 13.909 5.430 5.543 6.388 10.951 3.721 5.447 8.059 8.450 3.650 1.776 2.320 3.797 0.742 1.685 3.735 3.873 1.082 3.502 2.956 2.031 326 chr1 249118862 249121583 + 0 NA promoter-TSS (NM_001322463) promoter-TSS (NM_001322463) -68 NM_030645 80851 Hs.298573 NM_030645 ENSG00000175137 SH3BP5L - SH3 binding domain protein 5 like protein-coding 6.587 5.692 6.448 10.170 9.226 6.489 2.254 4.320 0.341 4.072 1.557 4.651 13.756 4.857 0.174 9.271 10.088 14.292 19.427 13.007 12.501 13.924 6.645 19.341 23.065 5.897 6.459 8.084 10.750 9.055 9.167 2.651 4.911 7.338 6.914 7.917 11.405 4.731 2.542 2.963 2.537 1.295 2.323 2.254 4.651 2.170 2.907 1.642 3.231 593 chr12 29385919 29400433 + 0 NA intron (NM_001271784, intron 1 of 10) LTR85c|LTR|Gypsy? 16620 NM_018099 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding nan nan nan 0.270 0.200 0.121 0.985 0.227 0.056 0.086 0.123 0.058 0.296 0.097 0.130 0.227 0.166 0.189 0.252 0.428 0.471 0.170 0.093 0.477 0.454 3.617 3.689 0.169 0.192 0.777 0.645 0.194 0.206 0.038 0.035 0.657 2.727 0.247 0.342 0.066 0.098 0.082 0.985 0.058 0.209 0.048 0.051 0.433 560 chr12 7044915 7057225 + 0 NA 3' UTR (NM_001940, exon 10 of 10) 3' UTR (NM_001940, exon 10 of 10) -1531 NM_001301836 113246 Hs.405913 NM_138425 ENSG00000111678 C12orf57 C10|GRCC10 chromosome 12 open reading frame 57 protein-coding 3.278 nan nan 9.118 5.260 2.758 2.766 0.572 0.052 2.993 1.343 3.492 9.426 2.675 0.129 3.239 4.529 4.380 5.676 nan 10.289 12.320 7.099 8.060 8.590 3.631 4.196 4.957 7.116 4.779 5.369 4.253 5.512 4.805 4.524 5.078 nan 1.855 1.029 4.167 3.323 0.868 3.909 2.766 3.492 7.934 1.156 1.857 1.780 1324 chr19 42572464 42582054 + 0 NA intron (NM_001330519, intron 1 of 1) intron (NM_001330519, intron 1 of 1) -3031 NM_022752 64763 Hs.13323 NM_022752 ENSG00000105732 ZNF574 FP972 zinc finger protein 574 protein-coding 3.843 2.019 3.338 1.925 3.647 2.212 3.508 1.264 0.334 0.948 0.414 3.965 3.245 2.087 0.120 2.984 2.973 2.509 3.629 4.486 4.369 5.890 3.127 9.491 9.848 3.339 4.248 3.859 6.179 4.994 4.532 4.354 6.117 3.179 3.219 4.940 5.274 2.619 1.440 2.476 2.685 0.729 0.704 3.508 3.965 1.695 1.537 2.221 1.726 498 chr11 78644065 78666335 + 0 NA intron (NM_001098816, intron 6 of 33) MIRc|SINE|MIR -369291 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial (putative) protein-coding nan 1.184 0.758 0.615 1.756 0.937 0.623 0.098 0.084 0.185 0.129 1.455 0.567 0.069 0.100 1.624 1.772 0.191 0.321 3.559 3.959 1.894 0.449 1.274 1.278 0.317 0.538 2.521 2.500 1.021 0.770 1.463 2.761 1.664 1.240 0.301 0.825 1.164 0.994 0.259 0.308 0.545 1.704 0.623 1.455 1.520 0.060 1.895 0.189 1888 chr4 38663649 38677295 + 0 NA intron (NM_016531, intron 1 of 5) intron (NM_016531, intron 1 of 5) -4223 NR_026804 79667 Hs.29725 NM_024614 ENSG00000231160 KLF3-AS1 - KLF3 antisense RNA 1 ncRNA 2.927 3.277 3.401 5.332 8.033 4.819 2.224 1.919 0.189 2.710 1.224 4.429 6.743 3.657 0.119 3.429 5.018 1.956 3.731 3.860 3.255 2.879 1.546 3.749 3.539 2.959 4.014 7.490 6.091 2.256 3.336 1.569 3.413 2.318 2.450 0.231 0.246 3.004 1.728 1.127 4.045 0.747 0.900 2.224 4.429 0.486 1.384 1.187 0.200 2161 chr6 107419021 107459108 + 0 NA Intergenic Intergenic -3428 NM_001080450 57673 Hs.418045 NM_001080450 ENSG00000178409 BEND3 KIAA1553 BEN domain containing 3 protein-coding 2.054 nan nan 1.282 1.218 0.688 1.249 0.162 0.133 0.376 0.197 0.919 1.872 0.849 0.134 9.049 10.499 0.798 0.930 1.341 nan 1.756 0.612 1.348 1.283 1.098 1.376 1.098 1.369 nan 1.882 0.514 1.157 1.781 1.410 1.385 1.583 0.877 0.534 0.928 1.031 0.526 0.593 1.249 0.919 0.352 0.751 0.409 0.537 1803 chr3 129028010 129036853 + 0 NA Intergenic Intergenic -2683 NR_026991 339942 Hs.450096 NM_001025468 H1FX-AS1 C3orf47 H1FX antisense RNA 1 ncRNA 5.141 nan 3.476 2.683 5.833 3.122 4.050 2.312 0.274 2.320 1.291 4.076 5.260 1.526 0.076 2.721 3.894 3.497 4.577 6.697 5.619 7.441 3.074 3.118 3.153 2.654 nan 3.357 4.814 6.172 6.684 2.273 4.016 2.733 2.059 4.087 3.866 2.749 1.361 3.205 4.090 0.731 2.603 4.050 4.076 0.916 1.676 1.533 1.338 845 chr14 105626432 105681819 + 0 NA Intergenic Intergenic -6465 NM_001318380 256281 Hs.526432 NM_177533 ENSG00000183828 NUDT14 UGPP|UGPPase nudix hydrolase 14 protein-coding 1.347 1.178 1.236 2.263 1.820 0.978 0.864 0.195 0.093 0.754 0.533 1.817 1.243 0.378 0.077 1.208 2.193 0.372 0.617 3.072 3.167 2.932 0.739 1.027 1.031 0.462 0.843 5.289 5.096 0.789 0.617 0.888 1.252 0.664 0.514 0.286 0.505 0.409 0.211 4.240 1.869 0.171 1.086 0.864 1.817 0.356 0.914 0.578 0.111 2351 chr8 37698115 37708374 + 0 NA intron (NM_018310, intron 3 of 3) FRAM|SINE|Alu 4187 NM_018310 55290 Hs.709301 NM_018310 ENSG00000104221 BRF2 BRFU|TFIIIB50 BRF2, RNA polymerase III transcription initiation factor subunit protein-coding 1.707 2.406 nan 7.353 1.582 0.864 1.746 1.041 0.202 1.168 0.728 3.722 2.847 1.171 0.095 2.326 2.967 2.345 3.721 4.413 4.762 3.381 1.106 3.795 3.888 0.919 1.257 2.414 3.477 1.767 1.671 1.327 2.314 1.885 1.726 1.482 1.561 2.071 1.136 1.308 1.687 0.268 0.372 1.746 3.722 0.282 1.100 0.907 0.607 1752 chr3 17448142 17474638 + 0 NA intron (NM_014744, intron 4 of 21) AluJr|SINE|Alu 280122 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding nan 0.863 0.770 0.134 0.224 0.097 0.058 0.113 0.073 0.090 0.094 0.041 0.203 0.055 0.102 0.198 0.199 0.222 0.368 0.296 0.416 0.645 0.269 0.190 0.212 0.704 0.792 0.565 0.480 0.613 0.251 0.144 0.212 1.703 2.695 0.759 1.961 0.554 0.377 0.029 0.064 0.475 0.058 0.058 0.041 0.015 0.084 0.038 0.725 1287 chr19 33781376 33794821 + 0 NA Intergenic AluJr4|SINE|Alu 5372 NM_004364 1050 Hs.76171 NM_004364 ENSG00000245848 CEBPA C/EBP-alpha|CEBP CCAAT/enhancer binding protein alpha protein-coding 0.800 1.192 0.904 0.510 0.374 0.198 0.228 0.122 0.071 0.110 0.080 0.135 9.086 0.927 0.098 1.085 1.424 4.140 5.632 0.431 0.370 0.776 0.124 0.430 0.401 0.323 0.801 0.148 0.224 nan 0.929 1.973 2.541 0.214 0.338 0.258 0.297 0.369 0.422 0.730 0.456 0.022 0.053 0.228 0.135 0.353 0.279 1.138 0.074 463 chr11 64033576 64041798 + 0 NA TTS (NM_001316314) TTS (NM_001316314) -14124 NM_001170726 56834 Hs.523763 NM_020155 ENSG00000173264 GPR137 C11orf4|GPR137A|TM7SF1L1 G protein-coupled receptor 137 protein-coding nan 2.048 3.160 2.758 2.417 1.111 1.992 1.339 0.326 1.042 0.663 1.979 9.324 4.505 0.235 3.593 5.454 2.811 4.180 4.062 3.892 4.794 1.638 5.082 5.168 3.413 5.044 4.376 5.470 3.140 3.416 2.555 5.003 2.845 3.104 2.431 3.835 2.602 1.249 3.693 2.745 0.762 1.613 1.992 1.979 1.331 2.248 3.512 1.310 1584 chr20 18644537 18662522 + 0 NA intron (NM_080820, intron 4 of 5) intron (NM_080820, intron 4 of 5) 25823 NR_109955 101929526 Hs.639402 NR_109955 ENSG00000233993 LOC101929526 - uncharacterized LOC101929526 ncRNA 1.731 nan 1.020 0.753 3.493 1.757 0.882 0.166 0.098 0.245 0.233 4.436 1.252 0.042 0.065 1.277 1.997 0.249 0.349 4.619 4.952 3.332 1.312 0.367 0.353 1.449 2.083 5.765 5.836 2.909 2.840 0.348 0.644 0.706 0.475 1.047 2.304 1.832 1.214 1.336 1.069 0.153 2.025 0.882 4.436 0.428 0.085 0.330 0.803 1666 chr21 27537991 27544496 + 0 NA intron (NM_001136131, intron 1 of 15) intron (NM_001136131, intron 1 of 15) 1895 NM_201413 351 Hs.434980 NM_000484 ENSG00000142192 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2 amyloid beta precursor protein protein-coding 4.485 2.452 4.488 4.488 5.078 2.562 3.352 2.385 0.173 2.749 1.285 4.550 12.797 2.699 0.092 6.151 8.320 4.036 8.177 8.498 7.251 6.993 3.327 9.009 8.712 6.025 7.422 6.619 11.526 6.549 8.165 3.118 7.220 5.896 4.448 3.675 nan 5.713 2.555 2.045 0.822 1.175 1.618 3.352 4.550 1.579 1.869 1.612 0.983 1197 chr18 47806263 47815512 + 0 NA exon (NM_014593, exon 9 of 15) exon (NM_014593, exon 9 of 15) -2743 NM_001204138 4152 Hs.405610 NM_002384 ENSG00000141644 MBD1 CXXC3|PCM1|RFT methyl-CpG binding domain protein 1 protein-coding nan 2.008 2.900 3.395 2.710 1.698 4.064 0.909 0.139 1.053 0.489 3.288 5.941 1.220 0.097 3.340 3.874 3.651 5.038 6.633 5.962 8.312 3.438 3.965 4.150 1.394 1.832 3.294 3.515 2.827 2.476 2.165 3.414 4.389 6.062 1.822 nan 5.146 2.453 1.986 2.125 0.843 1.889 4.064 3.288 0.589 1.628 1.520 1.029 752 chr14 21731491 21749331 + 0 NA Intergenic AluJb|SINE|Alu -2773 NM_001077442 3183 Hs.508848 NM_004500 ENSG00000092199 HNRNPC C1|C2|HNRNP|HNRPC|SNRPC heterogeneous nuclear ribonucleoprotein C (C1/C2) protein-coding nan 1.472 2.060 2.110 2.071 1.091 1.219 1.594 0.243 0.565 0.449 1.275 2.647 1.274 0.149 1.485 1.308 2.459 3.342 2.758 2.887 2.559 1.771 5.016 5.571 3.064 3.849 2.822 nan 8.542 7.540 1.778 2.647 2.317 2.550 4.513 5.333 1.464 0.921 1.655 1.320 0.368 1.082 1.219 1.275 1.622 0.641 0.616 2.268 996 chr16 89986354 89991565 + 0 NA promoter-TSS (NM_006086) promoter-TSS (NM_006086) 542 NM_001197181 10381 Hs.511743 NM_006086 ENSG00000258947 TUBB3 CDCBM|CDCBM1|CFEOM3|CFEOM3A|FEOM3|TUBB4|beta-4 tubulin beta 3 class III protein-coding nan 3.587 0.782 3.754 4.058 2.339 6.216 1.147 0.276 1.047 0.771 6.346 9.885 3.838 0.094 4.621 6.196 2.468 4.085 5.908 4.345 6.186 1.762 1.596 1.575 1.590 2.295 2.571 5.508 2.591 3.122 0.763 1.858 4.227 3.413 3.123 3.436 2.500 1.499 4.772 3.530 1.122 2.008 6.216 6.346 1.570 6.651 1.158 0.995 1332 chr19 44279690 44289721 + 0 NA intron (NM_002250, intron 1 of 8) MSR1|Satellite|Satellite 704 NM_002250 3783 Hs.10082 NM_002250 ENSG00000104783 KCNN4 DHS2|IK|IK1|IKCA1|KCA4|KCa3.1|SK4|hIKCa1|hKCa4|hSK4 potassium calcium-activated channel subfamily N member 4 protein-coding 0.954 2.998 0.788 0.653 4.005 1.954 2.561 0.226 0.145 0.651 0.403 7.760 1.396 0.296 0.164 1.760 3.140 1.503 2.660 3.440 4.070 6.294 1.754 0.586 0.633 0.492 0.885 1.213 1.626 0.345 0.222 1.061 1.467 1.115 0.828 0.178 0.441 1.948 1.164 4.054 1.232 0.149 0.088 2.561 7.760 0.269 0.218 0.473 0.086 476 chr11 65812808 65821107 + 0 NA promoter-TSS (NM_033036) promoter-TSS (NM_033036) -306 NM_033036 89792 Hs.208343 NM_033036 ENSG00000175229 GAL3ST3 GAL3ST-3|GAL3ST2 galactose-3-O-sulfotransferase 3 protein-coding nan 2.356 2.163 2.883 3.743 1.624 2.488 0.938 0.324 0.937 0.575 3.412 4.147 1.646 0.121 4.870 4.135 2.810 3.533 8.278 8.192 4.440 1.896 3.656 3.885 2.538 3.521 4.349 5.223 3.749 3.392 2.730 3.956 1.540 2.197 2.202 3.469 1.929 0.951 5.091 3.259 0.253 1.648 2.488 3.412 0.913 1.469 2.313 1.030 106 chr1 43854429 43872473 + 0 NA intron (NM_015284, intron 1 of 70) AluSx|SINE|Alu 7895 NM_015284 23334 Hs.643560 NM_015284 ENSG00000198198 SZT2 C1orf84|EIEE18|KIAA0467|SZT2A|SZT2B seizure threshold 2 homolog (mouse) protein-coding nan 1.102 nan 0.789 0.846 0.470 0.639 0.690 0.232 0.706 0.397 1.097 1.711 0.919 0.114 0.830 0.920 1.247 1.681 2.083 1.833 0.928 0.376 1.346 1.497 1.092 nan nan 4.347 1.097 0.819 1.155 nan 0.366 0.382 0.852 1.780 2.695 1.102 0.703 0.818 0.095 0.402 0.639 1.097 0.162 0.304 0.405 0.273 1546 chr2 223517742 223522355 + 0 NA intron (NM_005687, intron 1 of 16) intron (NM_005687, intron 1 of 16) 1026 NR_130154 10056 Hs.471452 NM_005687 ENSG00000116120 FARSB FARSLB|FRSB|HSPC173|PheHB|PheRS phenylalanyl-tRNA synthetase beta subunit protein-coding nan 3.667 3.958 5.793 6.972 3.283 6.181 2.823 0.278 3.596 2.196 6.726 nan 3.491 0.252 10.239 7.649 8.647 11.101 8.376 8.940 6.905 5.763 16.925 18.038 5.271 6.520 9.506 15.874 10.809 10.293 8.489 9.296 5.328 7.393 7.515 nan 4.221 2.285 3.356 2.253 0.993 1.714 6.181 6.726 1.758 2.224 2.384 2.621 1168 chr18 32816384 32822851 + 0 NA Intergenic MLT1H|LTR|ERVL-MaLR -1377 NM_001135178 84307 Hs.591061 NM_032347 ENSG00000186812 ZNF397 ZNF47|ZSCAN15 zinc finger protein 397 protein-coding nan 2.707 2.656 3.513 5.181 3.101 5.500 1.615 0.332 1.332 0.670 6.032 5.762 1.712 0.132 4.457 4.028 3.222 4.958 7.266 6.370 7.301 3.884 4.336 4.087 1.991 2.273 nan 12.289 4.225 4.499 0.883 2.055 4.501 4.606 3.431 3.245 6.243 3.161 2.074 1.421 0.724 1.231 5.500 6.032 0.658 1.575 0.624 1.236 2111 chr6 34190848 34217971 + 0 NA promoter-TSS (NM_145903) promoter-TSS (NM_145903) -168 NM_145903 3159 Hs.518805 NM_002131 ENSG00000137309 HMGA1 HMG-R|HMGA1A|HMGIY high mobility group AT-hook 1 protein-coding nan 1.585 nan 1.678 1.691 0.839 2.840 0.939 0.172 1.206 0.534 2.274 3.074 3.137 0.135 2.333 2.643 1.717 nan nan 2.298 2.588 0.895 3.201 3.309 1.690 2.541 6.268 9.138 2.996 3.377 1.336 2.203 2.221 2.304 2.844 3.187 1.464 0.793 0.694 1.047 0.481 0.948 2.840 2.274 0.575 0.957 0.730 1.325 1736 chr22 42224872 42231085 + 0 NA Intergenic MIR|SINE|MIR -1105 NM_004599 6721 Hs.443258 NM_004599 ENSG00000198911 SREBF2 SREBP-2|SREBP2|bHLHd2 sterol regulatory element binding transcription factor 2 protein-coding 4.616 nan 3.017 3.745 7.008 3.238 8.168 3.023 0.489 2.578 1.057 9.666 5.433 2.268 0.176 5.192 5.188 6.889 9.635 5.951 4.600 5.503 4.579 9.124 9.633 4.683 5.673 4.255 7.852 nan 7.458 3.051 5.175 6.098 6.050 5.379 6.490 2.477 1.402 3.777 4.794 2.366 2.428 8.168 9.666 1.518 4.158 2.506 3.065 1268 chr19 13179260 13207389 + 0 NA intron (NM_002501, intron 8 of 9) intron (NM_002501, intron 8 of 9) 20650 NM_005583 4066 Hs.46446 NM_005583 ENSG00000104903 LYL1 bHLHa18 LYL1, basic helix-loop-helix family member protein-coding 2.396 0.714 4.315 0.256 0.815 0.460 1.430 0.300 0.120 0.272 0.158 0.475 0.786 0.499 0.051 1.075 1.806 0.418 0.846 1.850 2.047 2.362 0.655 0.431 0.566 1.340 1.938 1.133 1.124 1.144 0.865 0.418 0.420 0.906 0.997 0.708 1.340 1.380 0.759 1.950 0.233 0.303 0.245 1.430 0.475 0.772 0.461 0.084 0.260 2345 chr8 28724239 28764568 + 0 NA intron (NM_001145159, intron 1 of 15) MIRb|SINE|MIR 3029 NM_001172562 55756 Hs.162397 NM_018250 ENSG00000104299 INTS9 CPSF2L|INT9|RC74 integrator complex subunit 9 protein-coding nan 1.143 nan 0.366 0.635 0.382 0.426 0.508 0.107 0.367 0.201 0.532 2.055 0.557 0.111 1.220 1.103 1.092 1.195 nan 1.617 nan 0.459 1.263 1.311 0.622 0.802 0.790 1.015 1.077 1.073 0.387 0.766 0.779 0.914 2.253 4.924 nan nan 0.310 0.398 0.210 0.130 0.426 0.532 0.109 0.374 0.302 1.410 1334 chr19 45191743 45205410 + 0 NA Intergenic AluSx1|SINE|Alu -3845 NM_001039213 388551 Hs.456381 NM_001039213 ENSG00000213892 CEACAM16 CEAL2|DFNA4B carcinoembryonic antigen related cell adhesion molecule 16 protein-coding 0.580 0.606 0.737 1.133 0.443 0.269 0.179 0.333 0.108 0.160 0.101 0.830 0.565 0.510 0.148 0.316 0.412 0.351 0.445 0.612 0.634 7.892 3.357 0.698 0.836 0.174 0.393 1.797 2.149 0.284 0.087 0.407 0.388 0.835 0.668 0.178 0.281 1.591 0.881 0.040 0.095 0.126 0.006 0.179 0.830 0.042 1.072 0.029 0.025 2516 chr9 75650008 75696945 + 0 NA Intergenic AluSc|SINE|Alu -93171 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding nan nan nan 0.110 0.299 0.127 0.199 0.211 0.073 0.060 0.119 0.043 0.195 1.793 0.095 0.303 0.187 0.469 nan 0.306 nan 0.158 0.076 0.305 0.358 0.112 0.157 0.275 0.279 0.212 0.110 0.123 0.200 0.330 0.430 0.225 0.401 0.588 0.568 0.013 0.038 0.063 0.005 0.199 0.043 0.010 0.057 0.053 0.071 1938 chr5 1311038 1359945 + 0 NA intron (NM_030782, intron 5 of 16) intron (NM_030782, intron 5 of 16) 9694 NM_030782 81037 Hs.444673 NM_030782 ENSG00000049656 CLPTM1L CRR9 CLPTM1 like protein-coding 0.846 1.913 6.084 1.849 1.353 0.652 0.476 0.332 0.125 0.618 0.493 2.330 1.672 3.278 0.196 1.338 1.520 0.615 nan 3.264 2.943 2.129 0.842 0.322 0.317 1.207 1.813 nan 2.381 nan 1.241 0.592 0.833 0.612 0.635 0.285 0.396 1.722 nan 1.369 1.514 0.134 0.395 0.476 2.330 0.368 0.944 0.461 0.195 1447 chr2 68544954 68548262 + 0 NA 5' UTR (NM_001111101, exon 1 of 3) 5' UTR (NM_001111101, exon 1 of 3) 575 NM_001111101 25927 Hs.212885 NM_015463 ENSG00000119865 CNRIP1 C2orf32|CRIP1 cannabinoid receptor interacting protein 1 protein-coding 10.088 2.240 nan 1.981 2.306 1.684 9.262 3.883 0.344 3.181 1.854 3.006 6.656 0.163 0.113 1.148 0.909 0.194 0.770 10.636 8.312 13.596 4.859 0.235 0.302 7.736 9.422 8.440 16.355 17.646 21.003 2.751 2.483 2.241 1.997 11.375 11.558 4.439 3.514 2.682 3.337 0.423 1.621 9.262 3.006 1.240 5.703 0.782 2.656 859 chr15 37166608 37199312 + 0 NA TTS (NM_170674) TTS (NM_170674) -4226 NR_024264 145845 Hs.302693 NM_001101327 LOC145845 - uncharacterized LOC145845 ncRNA 0.972 nan nan 0.064 0.299 0.172 0.297 0.313 0.044 0.316 0.314 0.056 0.286 2.466 0.109 0.529 1.163 0.610 0.536 0.269 0.304 0.359 0.159 0.229 0.238 0.841 1.030 0.219 0.256 0.741 0.351 0.606 1.015 2.722 2.146 1.330 2.345 0.661 0.522 0.029 0.074 0.941 0.153 0.297 0.056 0.021 0.034 0.660 0.994 2533 chr9 117664689 117694853 + 0 NA intron (NM_001252290, intron 2 of 4) intron (NM_001252290, intron 2 of 4) 13104 NM_001244 944 Hs.494901 NM_001244 ENSG00000106952 TNFSF8 CD153|CD30L|CD30LG|TNLG3A tumor necrosis factor superfamily member 8 protein-coding 0.732 1.404 nan 1.066 0.610 0.393 0.304 0.158 0.064 0.436 0.235 2.890 1.916 0.022 0.095 1.950 2.539 1.008 2.781 2.993 4.048 1.170 0.480 1.532 1.592 0.169 0.351 4.579 nan 0.727 0.422 2.544 3.885 1.228 1.504 0.122 0.214 nan 0.997 3.809 0.375 0.504 0.262 0.304 2.890 0.488 0.578 3.499 0.025 2109 chr6 32152730 32169338 + 0 NA promoter-TSS (NM_001276501).7 promoter-TSS (NM_001276501).7 -342 NM_001276501 63940 Hs.520046 NM_022107 ENSG00000213654 GPSM3 AGS4|C6orf9|G18|G18.1a|G18.1b|G18.2|NG1 G-protein signaling modulator 3 protein-coding nan 1.736 nan 2.079 2.549 1.292 4.787 2.295 0.243 0.625 0.338 3.952 3.848 3.576 0.121 3.827 5.116 3.607 nan nan 4.169 2.535 2.016 3.643 3.912 1.459 2.065 4.848 5.578 2.838 2.481 2.429 2.949 1.939 1.552 2.019 3.606 1.730 0.928 1.872 1.218 0.413 0.985 4.787 3.952 0.671 1.777 1.151 1.682 11 chr1 3235019 3286010 + 0 NA intron (NM_199454, intron 3 of 16) L1MEf|LINE|L1 -110633 NM_014448 27237 Hs.87435 NM_014448 ENSG00000130762 ARHGEF16 GEF16|NBR Rho guanine nucleotide exchange factor 16 protein-coding 1.311 nan 1.041 0.368 1.028 0.507 0.632 0.076 0.082 0.065 0.047 0.028 1.415 0.070 0.091 0.164 0.098 0.108 0.157 0.360 0.373 0.105 0.043 0.164 0.192 0.141 nan nan 0.163 nan 0.151 0.207 0.145 0.082 0.080 0.108 0.119 0.195 0.265 6.609 0.517 0.017 0.006 0.632 0.028 0.621 0.267 0.015 0.022 833 chr14 99732075 99741792 + 0 NA intron (NM_138576, intron 1 of 3) CpG 1117 NM_022898 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IMD49|RIT1|ZNF856B|hRIT1-alpha B-cell CLL/lymphoma 11B protein-coding 1.037 0.629 0.719 0.415 5.380 2.613 6.049 0.131 0.033 0.080 0.196 6.347 12.826 0.196 0.068 2.510 3.578 0.067 0.111 14.344 10.945 0.385 0.141 2.652 2.499 3.386 4.639 4.698 6.288 3.429 4.166 2.082 5.319 0.109 0.192 4.404 6.166 0.252 0.251 5.081 0.686 0.030 5.659 6.049 6.347 2.657 0.021 2.785 2.402 1767 chr3 49025465 49046116 + 0 NA intron (NM_177938, intron 2 of 8) intron (NM_177938, intron 2 of 8) 8449 NM_177938 54681 Hs.654944 NM_017732 ENSG00000178467 P4HTM EGLN4|HIFPH4|P4H-TM|PH-4|PH4|PHD4 prolyl 4-hydroxylase, transmembrane protein-coding 2.125 nan nan 2.020 0.963 0.513 1.338 0.921 0.169 0.892 0.419 1.206 4.193 1.520 0.091 1.563 2.146 1.945 2.693 3.316 3.353 1.887 0.790 2.307 2.290 1.176 1.506 3.610 4.853 2.376 2.542 1.716 2.938 1.366 1.335 1.621 1.784 1.693 1.016 4.601 2.941 0.278 0.913 1.338 1.206 0.315 0.894 1.341 0.310 2260 chr7 55111095 55182195 + 0 NA intron (NM_001346941, intron 1 of 21) intron (NM_001346941, intron 1 of 21) -30865 NM_001346900 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding nan 1.326 1.609 0.084 0.626 0.264 0.425 1.606 0.129 0.117 0.098 0.264 1.076 3.631 0.195 0.367 0.205 3.388 2.363 0.859 0.872 0.107 0.069 0.064 0.056 0.165 0.277 0.903 0.844 0.413 0.301 0.111 0.161 0.128 0.189 0.125 0.181 0.707 0.594 0.946 0.146 0.033 0.039 0.425 0.264 0.076 0.575 0.015 0.070 255 chr1 183599759 183610695 + 0 NA promoter-TSS (NM_015149) promoter-TSS (NM_015149) 45 NM_001297669 23179 Hs.497148 NM_015149 ENSG00000143344 RGL1 RGL ral guanine nucleotide dissociation stimulator like 1 protein-coding nan nan 2.041 1.207 1.325 0.573 1.884 2.547 0.321 1.572 1.233 0.963 3.386 0.964 0.139 3.152 4.292 4.933 4.792 2.704 nan 2.436 0.845 nan 5.461 4.466 5.554 1.314 1.673 3.423 2.964 2.740 5.617 2.933 3.299 1.496 nan 1.530 0.667 0.689 1.745 0.913 0.740 1.884 0.963 0.374 0.882 2.393 0.651 1739 chr22 44565697 44577246 + 0 NA intron (NM_001137605, intron 1 of 13) intron (NM_001137605, intron 1 of 13) 2635 NM_001137605 64098 Hs.658995 NM_022141 ENSG00000138964 PARVG - parvin gamma protein-coding 0.778 nan 0.490 1.006 0.322 0.180 0.556 0.123 0.055 0.690 0.166 5.410 1.658 0.084 0.065 0.310 0.374 0.355 0.660 1.751 1.326 2.735 1.244 0.414 0.500 0.146 nan 2.577 2.855 nan 0.195 0.142 0.258 0.296 0.276 0.225 0.382 0.545 0.477 0.131 0.935 0.042 0.109 0.556 5.410 0.084 0.175 0.017 0.063 314 chr1 239749802 239752771 + 0 NA intron (NM_001347716, intron 3 of 7) intron (NM_001347716, intron 3 of 7) -41087 NM_000740 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 0.801 1.485 1.602 0.393 0.371 0.320 1.045 0.073 0.052 0.230 0.202 0.327 0.111 0.116 5.553 3.695 19.595 4.697 0.264 0.322 nan 0.228 2.921 2.591 0.248 0.535 nan 0.203 0.304 0.150 1.044 2.403 0.058 0.033 0.210 0.325 nan 0.486 0.037 0.090 0.065 1.045 0.202 0.067 0.785 0.116 723 chr13 73711959 73723120 + 0 NA Intergenic AluSx|SINE|Alu 84609 NM_001730 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding nan 2.354 0.743 1.172 1.035 0.656 1.066 0.565 0.164 0.110 0.117 1.944 4.488 0.204 0.113 0.513 0.375 0.534 1.312 1.222 1.118 nan 3.267 0.091 0.138 0.059 0.128 1.116 1.822 nan 0.163 0.240 0.564 0.079 0.113 0.351 nan 0.290 0.265 0.281 2.480 0.597 1.066 1.944 0.026 0.128 0.053 0.077 1234 chr18 74549834 74574697 + 0 NA intron (NM_001306089, intron 2 of 30) intron (NM_001306089, intron 2 of 30) 26149 NM_007345 7776 Hs.719137 NM_007345 ENSG00000130856 ZNF236 ZNF236A|ZNF236B zinc finger protein 236 protein-coding nan nan 0.704 0.189 0.681 0.299 0.385 0.118 0.129 0.163 0.168 4.131 0.447 0.119 0.098 0.428 0.395 1.315 0.847 0.726 nan 0.951 0.364 0.522 0.519 0.330 0.479 1.174 nan 0.435 0.243 0.166 0.325 0.193 0.255 0.232 0.479 0.716 0.461 0.107 0.157 0.104 0.143 0.385 4.131 0.020 0.033 0.052 0.096 248 chr1 180235767 180272281 + 0 NA Intergenic AluJr|SINE|Alu -10208 NR_037642 100527964 Hs.496545 NR_037642 ENSG00000230124 LHX4-AS1 - LHX4 antisense RNA 1 ncRNA nan nan 1.413 0.174 0.324 0.168 0.267 0.273 0.127 0.159 0.183 0.320 0.379 0.122 0.123 0.577 0.534 0.598 0.706 0.541 nan 0.335 0.180 nan 0.492 0.834 1.094 0.484 0.472 0.747 0.473 0.582 0.702 0.128 0.148 1.129 nan 0.797 0.606 0.052 0.258 0.015 0.141 0.267 0.320 0.072 0.056 0.114 1.199 64 chr1 27844003 27872847 + 0 NA Intergenic Intergenic -41727 NM_001201404 10163 Hs.469244 NM_006990 ENSG00000158195 WASF2 IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2 WAS protein family member 2 protein-coding 3.109 3.577 nan 5.709 1.060 0.611 2.692 0.317 0.099 1.696 0.944 1.064 3.743 0.212 0.098 1.513 2.922 0.418 0.751 5.926 6.161 3.396 1.184 1.231 1.516 3.254 4.519 5.222 7.152 2.662 3.037 1.224 1.986 3.020 2.385 3.071 5.100 3.317 1.730 6.184 4.065 1.015 0.484 2.692 1.064 1.514 2.313 1.923 1.470 669 chr12 118493376 118501958 + 0 NA intron (NM_001278557, intron 1 of 8) intron (NM_001278557, intron 1 of 8) 1349 NM_001278558 55884 Hs.506985 NM_018639 ENSG00000176871 WSB2 SBA2 WD repeat and SOCS box containing 2 protein-coding nan nan 2.736 4.422 4.740 2.437 2.607 2.681 0.225 2.225 1.272 6.403 8.127 4.575 0.134 3.679 4.798 4.162 4.197 nan nan 8.185 2.960 5.248 5.360 1.481 2.167 9.337 11.520 2.136 1.782 3.756 5.111 4.450 5.212 1.072 1.490 nan 1.659 3.715 4.380 1.771 0.472 2.607 6.403 0.496 2.835 1.719 0.524 883 chr15 67036481 67073275 + 0 NA intron (NR_027654, intron 4 of 4) intron (NR_027654, intron 4 of 4) 60204 NM_005585 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 0.704 0.642 nan 0.102 0.305 0.145 0.388 2.168 0.333 0.089 0.081 0.316 0.857 0.138 0.083 0.319 0.353 2.383 7.056 0.396 0.454 nan 0.093 0.259 0.252 0.762 1.140 0.189 0.267 0.549 0.368 0.302 0.418 0.205 0.471 0.307 0.579 0.420 0.427 0.202 0.100 0.026 0.259 0.388 0.316 0.124 0.053 0.091 0.142 1764 chr3 35710312 35725453 + 0 NA intron (NM_016300, intron 1 of 19) intron (NM_016300, intron 1 of 19) -3231 NM_001267618 10777 Hs.475902 NM_016300 ENSG00000172995 ARPP21 ARPP-21|R3HDM3|RCS|TARPP cAMP regulated phosphoprotein 21 protein-coding 0.894 0.931 0.627 0.087 0.073 0.053 0.110 0.128 0.106 0.063 0.125 0.016 0.253 0.036 0.110 0.441 0.351 0.342 0.181 0.284 0.362 0.059 0.071 0.158 0.127 2.701 nan 0.241 0.236 2.977 2.109 0.178 0.214 0.025 0.040 0.315 0.886 0.347 0.304 0.048 0.076 0.012 0.084 0.110 0.016 0.096 0.174 0.045 0.171 696 chr13 26819805 26831840 + 0 NA Intergenic LTR85c|LTR|Gypsy? -2419 NM_001318368 1024 Hs.382306 NM_001260 ENSG00000132964 CDK8 K35 cyclin dependent kinase 8 protein-coding 2.022 1.526 2.949 2.081 0.511 0.333 0.299 0.451 0.160 0.651 0.460 1.283 2.250 0.646 0.109 2.710 3.039 1.671 nan 3.700 3.231 2.736 1.061 1.234 1.045 1.675 2.173 1.361 2.243 4.111 4.821 1.497 3.329 1.067 0.957 2.982 3.074 4.205 2.246 0.343 1.070 0.220 0.706 0.299 1.283 0.282 0.848 0.874 0.899 1769 chr3 50159171 50195247 + 0 NA intron (NR_135301, intron 1 of 3) intron (NR_135301, intron 1 of 3) -15269 NM_001318798 6405 Hs.32981 NM_004186 ENSG00000001617 SEMA3F SEMA-IV|SEMA4|SEMAK semaphorin 3F protein-coding 1.678 1.475 nan 0.123 0.392 0.200 0.818 0.326 0.130 0.104 0.082 0.483 0.828 0.314 0.062 0.509 0.698 0.490 0.615 0.866 0.765 0.818 0.287 0.379 0.324 0.383 0.696 0.724 1.292 nan 1.915 0.523 0.818 0.202 0.184 2.308 7.325 0.410 0.357 1.268 0.564 0.047 0.844 0.818 0.483 0.522 0.093 0.424 4.422 1293 chr19 36133305 36140502 + 0 NA Intergenic AluJr|SINE|Alu -2222 NM_001863 1340 Hs.431668 NM_001863 ENSG00000126267 COX6B1 COX6B|COXG|COXVIb1 cytochrome c oxidase subunit 6B1 protein-coding 3.486 2.644 3.043 5.325 2.323 1.351 1.525 1.089 0.178 0.992 0.521 1.561 18.474 2.771 0.106 2.143 2.688 2.891 3.797 3.676 2.938 4.148 1.760 3.193 3.665 2.343 2.897 4.325 5.514 nan 3.400 2.828 4.304 2.554 2.492 2.248 3.742 2.211 1.027 1.991 4.195 0.437 1.010 1.525 1.561 0.674 2.031 2.134 1.223 1710 chr22 24127574 24133479 + 0 NA intron (NM_001317946, intron 1 of 8) Tigger8|DNA|TcMar-Tigger 1408 NM_003073 6598 Hs.534350 NM_003073 ENSG00000099956 SMARCB1 BAF47|CSS3|INI1|MRD15|PPP1R144|RDT|RTPS1|SNF5|SNF5L1|SWNTS1|Sfh1p|Snr1|hSNFS SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 protein-coding 2.610 nan 3.319 1.926 2.986 1.709 2.015 1.584 0.166 1.227 0.329 3.922 6.900 1.897 0.123 3.407 3.465 3.498 5.336 5.029 5.735 3.211 1.536 7.185 7.642 3.082 4.423 3.810 5.561 4.320 3.749 2.121 3.254 2.448 3.205 2.797 2.914 5.998 3.228 1.391 3.144 0.694 1.775 2.015 3.922 1.255 1.992 1.195 0.887 722 chr13 73628505 73642315 + 0 NA intron (NM_001730, intron 1 of 3) intron (NM_001730, intron 1 of 3) 2480 NM_001730 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding nan 6.228 1.559 1.506 1.704 0.977 2.998 1.020 0.046 0.148 0.109 2.142 14.378 3.628 0.098 0.560 0.712 2.277 5.377 1.616 1.459 nan 1.581 0.663 0.713 0.216 0.284 2.361 3.455 nan 0.597 1.761 3.960 1.086 1.086 0.508 nan 0.400 0.235 1.159 5.109 0.138 3.475 2.998 2.142 0.055 0.383 1.533 0.126 716 chr13 69987827 69993027 + 0 NA Intergenic Tigger3a|DNA|TcMar-Tigger 193949 NR_125752 103689913 Hs.585628 NR_125752 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA nan 0.903 0.528 0.069 0.298 0.123 0.295 0.028 0.153 0.061 0.048 0.047 0.300 0.043 0.070 1.221 0.541 9.234 3.318 0.399 0.345 nan 0.167 0.474 0.434 0.121 0.163 0.195 0.167 nan 0.255 0.623 0.493 0.024 0.030 0.337 nan 0.098 0.219 0.010 0.018 0.167 0.295 0.047 0.178 0.047 1770 chr3 50629414 50641137 + 0 NA Intergenic AluSq2|SINE|Alu 13987 NM_013324 1154 Hs.655334 NM_013324 ENSG00000114737 CISH BACTS2|CIS|CIS-1|G18|SOCS cytokine inducible SH2 containing protein protein-coding 1.034 2.268 nan 0.404 0.628 0.219 0.218 1.197 0.287 0.242 0.148 0.367 4.878 0.085 0.093 0.429 0.824 0.449 0.939 0.764 0.782 0.295 0.109 0.877 0.922 0.976 1.377 3.513 3.949 nan 1.300 1.168 1.739 0.208 0.167 0.312 0.647 1.105 0.604 1.471 1.697 0.049 0.048 0.218 0.367 0.540 2.959 1.493 0.167 1082 chr17 44437208 44454120 + 0 NA Intergenic Intergenic -4515 NR_033799 728806 Hs.735097 NR_033799 NSFP1 NSFP N-ethylmaleimide-sensitive factor pseudogene 1 pseudo 3.443 2.704 nan 1.492 4.452 2.303 0.975 0.522 0.216 1.910 1.057 3.256 3.883 1.081 0.069 1.762 1.577 2.624 3.315 1.442 nan 2.894 0.911 12.648 13.011 1.841 2.215 2.323 nan 3.636 3.509 1.573 2.526 4.025 5.405 3.049 4.386 3.150 1.602 0.872 2.921 1.336 0.769 0.975 3.256 0.471 2.021 1.064 1.250 2592 chrX 44731075 44734809 + 0 NA exon (NM_021140, exon 1 of 29) exon (NM_021140, exon 1 of 29) 521 NR_111960 7403 Hs.522616 NM_021140 ENSG00000147050 KDM6A KABUK2|UTX|bA386N14.2 lysine demethylase 6A protein-coding 7.119 7.047 nan 5.839 4.062 1.839 3.164 3.970 0.299 4.396 1.852 4.228 11.793 3.098 0.046 2.123 2.443 11.608 15.884 9.802 8.691 7.053 3.885 25.446 25.391 4.392 5.551 6.315 12.144 12.911 12.938 2.895 7.916 5.868 5.228 9.431 6.790 2.504 1.412 2.488 4.178 1.454 5.122 3.164 4.228 1.248 2.218 1.401 2.418 1560 chr2 242252195 242258153 + 0 NA promoter-TSS (NM_001321035) promoter-TSS (NM_001321035) 83 NM_005336 3069 Hs.471851 NM_005336 ENSG00000115677 HDLBP HBP|PRO2900|VGL high density lipoprotein binding protein protein-coding 5.838 nan 4.337 4.414 4.782 2.768 3.885 1.896 0.277 2.171 0.963 5.258 9.333 4.762 0.153 7.761 6.896 6.541 9.300 5.788 5.663 5.622 3.593 17.546 19.480 4.312 5.701 6.619 10.874 9.056 8.538 7.002 10.779 3.843 4.485 9.579 7.561 2.138 1.155 4.565 3.284 0.574 1.720 3.885 5.258 0.766 2.407 2.895 2.557 601 chr12 49685651 49691546 + 0 NA promoter-TSS (NM_006262) promoter-TSS (NM_006262) -311 NM_006262 5630 Hs.37044 NM_006262 ENSG00000135406 PRPH NEF4|PRPH1 peripherin protein-coding 4.787 nan 0.968 0.568 0.982 0.326 1.647 0.611 0.162 0.473 0.336 0.750 0.437 0.164 0.049 0.545 0.912 0.621 0.809 2.170 1.459 3.711 1.276 0.559 0.709 3.715 3.731 1.869 2.568 1.744 2.806 0.681 1.122 0.781 0.605 1.314 4.576 2.877 1.417 8.608 11.035 0.224 0.176 1.647 0.750 2.220 2.417 1.193 1.050 842 chr14 104159208 104183352 + 0 NA intron (NM_001100119, intron 6 of 9) intron (NM_001100119, intron 6 of 9) 10543 NM_005432 7517 Hs.592325 NM_005432 ENSG00000126215 XRCC3 CMM6 X-ray repair cross complementing 3 protein-coding 2.727 1.016 4.205 1.088 0.665 0.398 1.135 0.458 0.113 0.510 0.368 0.853 1.408 0.567 0.107 0.915 1.182 1.180 1.571 1.914 1.973 2.025 0.830 0.729 0.703 1.389 2.185 1.368 2.083 1.589 1.604 0.710 1.210 0.781 0.948 0.904 0.775 1.282 0.827 0.674 0.752 0.166 0.349 1.135 0.853 0.149 0.278 0.237 0.245 523 chr11 118777793 118801823 + 0 NA Intergenic Intergenic -8195 NM_182557 283149 Hs.414740 NM_182557 ENSG00000186174 BCL9L BCL9-2|DLNB11 B-cell CLL/lymphoma 9-like protein-coding 1.496 1.749 1.855 1.265 3.244 1.639 4.068 1.678 0.208 0.950 0.573 2.517 4.400 6.361 0.167 4.252 nan 4.036 8.194 2.269 1.957 2.640 0.866 4.161 4.416 2.546 nan 4.317 5.438 1.141 1.187 8.189 12.401 3.386 3.547 1.187 2.975 1.243 0.738 4.259 2.657 1.158 0.479 4.068 2.517 0.819 0.680 11.380 0.477 1018 chr17 8073175 8080980 + 0 NA 3' UTR (NM_032354, exon 5 of 5) 3' UTR (NM_032354, exon 5 of 5) 2637 NM_032354 84314 Hs.513933 NM_032354 ENSG00000179029 TMEM107 GRVS638|PRO1268 transmembrane protein 107 protein-coding 3.075 2.077 2.284 2.175 3.993 1.957 2.231 0.756 0.154 0.833 0.635 2.762 5.961 1.110 0.089 5.607 6.294 4.566 6.514 5.675 6.408 5.877 4.810 3.779 4.376 2.057 2.625 4.891 6.597 2.891 2.791 3.760 4.683 2.052 2.914 5.790 6.935 0.867 0.416 2.990 1.763 0.327 0.896 2.231 2.762 1.310 2.986 1.597 1.696 2572 chr9 139117543 139142959 + 0 NA intron (NM_181701, intron 1 of 11) intron (NM_181701, intron 1 of 11) 7436 NM_181701 169714 Hs.144073 NM_181701 ENSG00000165661 QSOX2 QSCN6L1|SOXN quiescin sulfhydryl oxidase 2 protein-coding nan 0.942 5.425 1.111 0.551 0.262 0.680 0.236 0.089 0.702 0.355 3.025 1.642 0.248 0.075 1.250 1.865 0.446 0.729 4.486 4.355 nan 0.554 0.357 0.314 0.902 1.286 1.464 1.958 1.829 1.786 0.609 0.944 1.316 1.561 0.687 0.669 1.307 0.743 1.638 1.083 0.490 1.359 0.680 3.025 0.692 0.497 0.315 0.136 1125 chr17 77016049 77033281 + 0 NA promoter-TSS (NR_040019) promoter-TSS (NR_040019) -928 NR_040019 100507410 Hs.666723 NR_040018 ENSG00000265096 C1QTNF1-AS1 - C1QTNF1 antisense RNA 1 ncRNA 1.380 2.750 1.625 0.321 0.961 0.388 0.960 2.364 0.395 0.543 0.213 0.166 2.129 0.126 0.091 0.740 0.874 0.401 1.244 0.942 0.870 3.025 0.852 0.305 0.280 nan 0.860 0.506 0.730 1.817 1.650 0.282 0.387 1.051 1.091 0.229 0.469 nan 0.866 0.897 3.872 0.216 0.046 0.960 0.166 0.209 0.817 0.114 0.087 1728 chr22 38849679 38865687 + 0 NA Intergenic CpG -6384 NM_006855 11015 Hs.745072 NM_006855 ENSG00000100196 KDELR3 ERD2L3 KDEL endoplasmic reticulum protein retention receptor 3 protein-coding 1.397 nan 0.802 0.226 0.682 0.305 1.293 0.226 0.060 0.127 0.129 0.699 1.635 1.174 0.110 2.245 4.060 0.563 0.950 0.892 0.879 1.155 0.409 0.366 0.414 1.051 nan 0.509 0.835 nan 2.266 0.733 1.387 0.759 0.782 0.360 0.584 0.392 0.330 0.306 0.567 0.101 0.556 1.293 0.699 0.610 0.673 0.852 0.116 564 chr12 8228971 8236862 + 0 NA Intergenic L2c|LINE|L2 -1891 NR_024260 25977 Hs.555927 NM_015509 ENSG00000089818 NECAP1 EIEE21 NECAP endocytosis associated 1 protein-coding 2.791 nan nan 4.520 2.070 0.849 2.120 0.483 0.082 1.403 0.829 2.135 4.135 1.552 0.158 1.658 1.809 2.923 3.894 nan 5.692 9.122 3.452 6.940 7.413 1.831 2.346 2.134 3.190 4.305 4.008 2.284 4.096 2.951 3.005 2.942 nan 1.870 1.109 1.659 1.779 0.337 1.745 2.120 2.135 5.222 0.669 1.735 0.978 1215 chr18 56525744 56538901 + 0 NA intron (NM_001318728, intron 1 of 10) intron (NM_001318728, intron 1 of 10) 999 NM_001318728 55205 Hs.529023 NM_018181 ENSG00000074657 ZNF532 - zinc finger protein 532 protein-coding nan 2.982 3.664 3.038 3.778 2.143 8.472 0.823 0.147 1.503 0.691 9.151 6.426 1.386 0.063 3.977 5.091 3.639 4.216 13.954 12.708 6.808 3.225 9.269 9.964 2.081 2.503 6.696 8.731 3.319 3.531 2.744 4.331 5.450 4.757 4.419 5.193 nan 3.111 3.903 3.368 1.849 2.718 8.472 9.151 0.548 1.774 1.352 2.087 1655 chr20 62273171 62290948 + 0 NA intron (NM_015894, intron 1 of 4) intron (NM_015894, intron 1 of 4) 2060 NM_001276310 50861 Hs.639609 NM_015894 ENSG00000197457 STMN3 SCLIP stathmin 3 protein-coding 2.968 2.713 2.135 2.536 2.268 1.115 2.193 0.446 0.255 1.356 0.666 3.002 5.619 1.743 0.126 3.859 nan 1.007 1.256 4.716 4.492 5.427 1.971 2.472 2.624 2.024 3.181 2.801 3.786 2.910 3.068 1.977 3.226 1.136 0.935 2.105 2.361 2.486 1.415 2.717 2.928 0.386 1.462 2.193 3.002 0.985 3.010 1.105 0.909 1479 chr2 144152688 144162550 + 0 NA intron (NM_018460, intron 6 of 13) intron (NM_018460, intron 6 of 13) 270720 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 0.897 nan 1.029 0.107 0.326 0.224 0.378 0.712 0.148 0.126 0.101 0.572 1.140 0.033 0.081 0.238 0.158 0.405 0.775 0.570 0.741 0.757 0.185 0.339 0.315 5.428 5.226 0.729 0.956 1.448 1.097 0.105 0.221 0.050 0.036 0.359 0.748 0.414 0.349 0.384 0.044 0.048 0.410 0.378 0.572 0.184 0.124 0.148 0.080 238 chr1 167142414 167177657 + 0 NA intron (NR_110811, intron 2 of 3) intron (NR_110811, intron 2 of 3) 5007 NR_110811 101928484 Hs.568496 NR_110811 LINC01363 RBSG4 long intergenic non-protein coding RNA 1363 ncRNA 1.404 nan 2.913 0.156 0.265 0.168 0.671 0.122 0.141 0.166 0.163 0.068 0.359 0.055 0.112 0.530 0.361 0.453 0.454 0.453 nan 0.921 0.251 0.119 0.134 0.598 1.047 0.320 nan 1.621 1.542 0.316 0.475 0.736 1.103 1.730 5.417 0.631 0.535 0.030 0.226 0.142 0.051 0.671 0.068 0.187 0.046 0.098 3.774 392 chr11 803343 811627 + 0 NA Intergenic AluY|SINE|Alu -2235 NM_145886 55367 Hs.592290 NM_018494 ENSG00000177595 PIDD1 LRDD|PIDD p53-induced death domain protein 1 protein-coding 5.905 5.255 9.370 3.590 4.454 2.452 4.472 1.846 0.449 2.585 1.417 7.995 12.068 2.974 0.137 7.395 7.829 5.219 7.587 12.327 10.012 10.597 4.809 8.033 8.819 6.170 8.207 6.720 9.394 6.149 6.762 4.271 6.531 6.106 6.368 4.905 4.455 3.972 2.038 3.305 6.086 1.231 1.624 4.472 7.995 1.481 3.691 2.525 1.597 2408 chr8 106742237 106793371 + 0 NA intron (NM_012082, intron 5 of 7) intron (NM_012082, intron 5 of 7) 304927 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 - ZFPM2 antisense RNA 1 ncRNA 1.040 nan nan 0.155 0.288 0.129 0.055 0.291 0.110 0.046 0.081 0.070 0.857 0.106 0.103 0.319 0.199 0.320 0.331 0.344 0.415 nan 0.171 0.424 0.446 4.906 nan 0.178 nan nan 0.663 0.135 0.273 0.069 0.096 0.490 nan 0.717 0.560 0.038 0.050 0.015 0.045 0.055 0.070 0.375 0.070 0.049 0.205 116 chr1 52519918 52523698 + 0 NA promoter-TSS (NM_015913) promoter-TSS (NM_015913) 35 NR_046406 51060 Hs.476033 NM_015913 ENSG00000117862 TXNDC12 AG1|AGR1|ERP16|ERP18|ERP19|PDIA16|TLP19|hAG-1|hTLP19 thioredoxin domain containing 12 protein-coding 9.908 4.125 7.486 11.166 9.600 4.776 7.059 6.311 0.382 6.575 2.586 3.774 20.242 10.479 0.288 8.845 8.050 8.259 12.365 15.992 11.942 13.879 7.646 20.808 22.752 8.692 10.450 12.282 19.161 8.463 11.138 4.849 9.377 5.579 5.614 9.123 13.690 5.254 3.152 8.183 8.484 0.733 5.670 7.059 3.774 2.449 3.925 3.964 4.712 2266 chr7 57697300 57701845 + 0 NA Intergenic L2b|LINE|L2 189689 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding nan 0.986 1.231 0.181 0.549 0.463 0.141 0.165 0.324 0.136 0.183 0.106 0.582 0.163 0.271 2.489 5.459 8.705 1.851 0.349 0.421 0.208 0.135 0.449 0.565 0.334 0.447 0.104 0.219 0.559 0.172 0.595 0.846 0.036 0.132 0.236 0.280 0.363 0.504 0.036 0.136 0.084 0.159 0.141 0.106 0.022 0.056 0.152 0.080 37 chr1 11066855 11077456 + 0 NA promoter-TSS (NM_007375) promoter-TSS (NM_007375) -524 NM_007375 23435 Hs.300624 NM_007375 ENSG00000120948 TARDBP ALS10|TDP-43 TAR DNA binding protein protein-coding 2.459 1.713 nan 8.716 2.084 1.302 1.801 1.333 0.274 0.521 0.393 1.264 3.967 1.507 0.145 2.833 2.511 3.380 4.632 5.069 6.054 2.142 2.160 7.150 nan 1.948 nan 9.452 11.480 nan 3.357 2.602 2.778 1.293 1.860 4.044 2.766 2.046 0.927 1.824 1.160 0.251 0.360 1.801 1.264 0.531 0.872 0.344 0.771 1403 chr2 15682584 15706420 + 0 NA intron (NM_015909, intron 3 of 51) intron (NM_015909, intron 3 of 51) 6970 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 1.134 1.023 1.056 0.732 0.437 0.235 0.242 0.304 0.088 0.395 0.304 0.285 2.023 0.454 0.131 0.818 1.142 0.676 0.789 0.967 0.835 2.265 0.586 0.538 0.548 0.900 1.120 1.251 nan 1.096 0.947 28.065 35.452 0.249 0.206 1.158 nan 0.746 0.625 0.393 0.537 0.044 0.230 0.242 0.285 0.261 0.618 23.937 0.310 1473 chr2 121939148 121947551 + 0 NA Intergenic Intergenic 99429 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 0.889 nan nan 3.011 0.328 0.343 0.809 0.045 0.037 1.276 0.260 0.935 1.636 0.103 0.053 1.174 1.546 0.244 0.382 0.473 0.688 12.054 4.487 3.903 4.425 0.188 0.332 5.370 6.492 0.360 0.265 0.161 0.406 1.293 1.161 0.185 0.335 1.387 0.885 0.658 0.381 0.157 0.113 0.809 0.935 0.206 0.212 0.030 0.073 686 chr12 125396285 125426483 + 0 NA Intergenic Intergenic 11291 NR_049820 100847004 NR_049820 ENSG00000265345 MIR5188 mir-5188 microRNA 5188 ncRNA 2.702 3.004 2.228 1.829 3.821 2.201 2.372 1.827 0.406 1.543 1.102 2.296 7.301 4.356 0.190 2.818 4.390 2.749 4.128 4.541 4.391 nan 3.195 5.292 5.578 2.706 3.482 5.219 8.518 3.593 3.513 2.296 4.295 2.748 3.306 2.662 4.479 3.117 1.734 2.948 3.032 0.476 0.926 2.372 2.296 0.551 2.311 2.113 1.270 1793 chr3 114979383 114992093 + 0 NA Intergenic Intergenic -119611 NM_015642 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 0.996 nan 0.661 0.132 0.512 0.152 1.526 0.152 0.090 0.273 0.214 0.113 0.421 0.051 0.104 0.376 0.244 0.213 0.258 0.352 nan 8.591 6.275 0.282 0.269 nan 0.947 0.255 0.252 0.631 0.269 0.106 0.098 0.099 0.188 0.404 0.825 0.772 0.731 0.113 0.161 0.022 0.056 1.526 0.113 0.023 0.810 0.023 0.187 1846 chr3 176851367 176876524 + 0 NA intron (NM_001321194, intron 1 of 16) ERVL-B4-int|LTR|ERVL 50327 NM_001321195 79718 Hs.714201 NM_024665 ENSG00000177565 TBL1XR1 C21|DC42|IRA1|MRD41|TBLR1 transducin beta like 1 X-linked receptor 1 protein-coding 1.312 1.219 0.952 0.435 0.958 0.427 0.157 0.458 0.217 0.335 0.295 0.208 1.015 0.304 0.129 0.436 0.381 1.509 4.042 0.508 0.596 0.870 0.321 0.383 0.394 0.465 0.751 0.944 1.341 0.704 0.668 0.246 0.531 0.168 0.243 0.589 1.179 0.230 0.199 0.293 0.318 0.049 0.372 0.157 0.208 0.078 0.085 0.288 0.328 109 chr1 44437964 44449561 + 0 NA 3' UTR (NM_004047, exon 8 of 8) 3' UTR (NM_004047, exon 8 of 8) -1112 NM_003780 8704 Hs.632403 NM_003780 ENSG00000117411 B4GALT2 B4Gal-T2|B4Gal-T3|beta4Gal-T2 beta-1,4-galactosyltransferase 2 protein-coding nan 2.227 nan 1.902 2.253 1.299 1.946 1.398 0.195 1.747 1.108 3.960 3.972 1.520 0.088 2.346 2.882 2.494 3.194 4.987 4.712 2.753 0.814 2.208 2.045 2.335 nan 11.394 14.233 2.654 2.921 3.118 nan 1.561 1.559 2.528 3.509 2.349 1.178 1.991 2.729 0.289 0.999 1.946 3.960 0.794 1.301 1.558 1.278 606 chr12 52256886 52290144 + 0 NA Intergenic AluJo|SINE|Alu -8278 NM_001130015 341405 Hs.433492 NM_182608 ENSG00000167612 ANKRD33 C12orf7|PANKY ankyrin repeat domain 33 protein-coding nan 0.911 1.433 0.243 0.355 0.224 0.258 0.144 0.097 0.089 0.191 0.284 0.450 0.084 0.077 nan 1.593 0.261 0.395 1.101 nan 2.790 0.765 0.301 0.358 0.287 nan 0.822 nan 1.376 1.404 0.658 0.673 0.867 0.918 1.319 3.624 0.678 0.582 0.186 0.181 0.257 0.178 0.258 0.284 0.229 0.298 0.217 1.049 2289 chr7 99677408 99688247 + 0 NA Intergenic Intergenic -2656 NM_001278287 7551 Hs.435302 NM_017715 ENSG00000166526 ZNF3 A8-51|HF.12|KOX25|PP838|Zfp113 zinc finger protein 3 protein-coding nan 1.828 nan 2.968 3.513 1.882 1.838 1.322 0.209 2.747 1.438 2.901 3.170 2.932 0.250 4.700 4.830 4.108 5.936 4.696 4.672 6.408 4.005 6.277 7.079 2.544 3.926 3.190 4.728 4.683 4.837 3.817 5.443 4.832 5.432 2.841 nan 4.710 2.594 1.444 2.608 0.865 0.796 1.838 2.901 0.931 1.262 1.381 0.536 136 chr1 68138361 68168143 + 0 NA intron (NM_001199741, intron 2 of 2) intron (NM_001199741, intron 2 of 2) 2392 NM_001924 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 3.175 1.656 nan 0.778 0.905 0.528 1.172 1.490 0.248 0.717 0.399 0.696 2.204 0.307 0.111 0.651 0.901 3.550 4.828 1.517 1.232 2.747 1.304 0.800 0.739 nan nan 2.352 nan 1.647 1.825 0.775 1.385 2.123 3.380 1.591 5.388 1.402 0.838 0.680 1.136 0.730 0.856 1.172 0.696 0.830 0.959 0.589 1.360 692 chr12 133531026 133534110 + 0 NA intron (NM_183238, intron 1 of 4) C-rich|Low_complexity|Low_complexity 300 NM_183238 100289635 Hs.29698 NM_183238 ENSG00000196458 ZNF605 - zinc finger protein 605 protein-coding 2.238 1.244 1.489 1.568 1.880 0.677 1.842 0.707 0.103 1.473 0.670 2.469 3.849 3.769 0.147 0.315 0.661 0.348 0.372 3.186 2.594 3.651 1.300 4.959 4.873 0.796 1.367 nan 3.969 1.917 2.414 1.247 1.817 1.367 0.862 1.747 2.376 0.143 0.174 2.421 0.551 0.217 12.570 1.842 2.469 0.712 1.976 0.805 1.248 1461 chr2 101722219 101752765 + 0 NA intron (NR_138475, intron 1 of 18) intron (NR_138475, intron 1 of 18) 30417 NR_138475 11138 Hs.442657 NM_007063 ENSG00000204634 TBC1D8 AD3|GRAMD8|HBLP1|TBC1D8A|VRP TBC1 domain family member 8 protein-coding 1.037 nan 1.749 1.919 0.678 0.351 0.254 0.737 0.126 0.645 0.463 1.772 2.031 0.074 0.084 0.329 0.329 0.326 0.809 1.350 1.344 2.758 0.792 0.321 0.343 0.344 0.545 3.366 3.820 0.669 0.457 0.463 0.856 0.789 1.209 1.367 2.722 1.272 0.741 0.632 0.214 0.172 0.081 0.254 1.772 0.150 0.736 0.681 0.754 2261 chr7 55431644 55435989 + 0 NA exon (NM_018697, exon 1 of 9) exon (NM_018697, exon 1 of 9) 675 NM_018697 55915 Hs.595384 NM_018697 ENSG00000132434 LANCL2 GPR69B|TASP LanC like 2 protein-coding nan 7.601 11.356 6.707 6.270 3.249 6.998 3.108 0.295 4.842 2.351 10.190 12.564 6.936 0.257 14.310 13.966 10.339 13.266 18.601 17.008 13.487 6.255 12.440 12.384 5.168 6.788 16.809 21.261 8.938 9.596 6.766 12.748 8.574 7.075 7.687 5.734 5.414 3.021 10.576 4.018 1.209 3.728 6.998 10.190 1.830 5.468 2.943 2.337 2493 chr9 16568364 16587617 + 0 NA intron (NM_001317939, intron 3 of 6) intron (NM_001317939, intron 3 of 6) 292796 NM_001317939 54796 Hs.656581 NM_017637 ENSG00000173068 BNC2 BSN2 basonuclin 2 protein-coding nan nan 0.794 0.150 0.245 0.183 0.526 0.320 0.118 0.081 0.146 0.062 0.514 0.566 0.087 0.265 0.131 0.582 0.372 0.824 0.986 0.152 0.126 0.169 0.142 3.156 3.594 0.100 0.099 0.497 0.306 0.555 0.629 0.811 0.713 0.270 0.566 1.423 1.049 0.026 0.148 0.282 0.164 0.526 0.062 0.108 0.063 0.371 0.071 2110 chr6 33171556 33177676 + 0 NA promoter-TSS (NR_029633) promoter-TSS (NR_029633) -996 NR_029633 407002 NR_029633 ENSG00000199036 MIR219A1 MIR219-1|MIRN219-1|MRI219-1|hsa-mir-219a-1|mir-219|mir-219a-1 microRNA 219a-1 ncRNA nan 2.635 nan 2.518 2.670 1.021 9.503 2.120 0.316 1.558 0.659 5.443 5.491 3.248 0.132 3.071 5.006 3.993 nan nan 4.186 4.122 1.539 6.904 7.650 2.542 3.411 4.573 6.208 4.456 4.640 1.519 2.970 3.328 3.107 2.443 4.147 2.759 1.270 2.070 2.437 0.671 2.807 9.503 5.443 1.302 2.840 1.303 1.394 457 chr11 62491334 62500482 + 0 NA promoter-TSS (NM_001318814) promoter-TSS (NM_001318814) -44 NM_173810 283237 Hs.31704 NM_173810 ENSG00000162222 TTC9C - tetratricopeptide repeat domain 9C protein-coding nan 2.861 2.344 5.096 4.970 2.276 3.224 1.615 0.370 2.046 1.328 4.777 8.823 4.518 0.228 6.881 7.157 5.178 7.390 9.964 9.413 5.571 3.183 8.464 8.555 3.983 5.387 5.587 8.556 5.994 5.129 5.116 9.798 4.536 5.501 3.775 4.640 2.906 1.116 4.151 6.027 1.612 2.948 3.224 4.777 0.946 1.919 3.311 1.551 1298 chr19 36704481 36708053 + 0 NA promoter-TSS (NM_152477) promoter-TSS (NM_152477) -281 NM_001042474 147929 Hs.596338 NM_152477 ENSG00000196357 ZNF565 - zinc finger protein 565 protein-coding 9.106 2.507 4.808 10.974 6.329 3.806 3.726 3.170 0.272 3.066 0.934 4.910 20.728 9.299 0.240 7.000 5.810 7.226 9.222 10.378 10.104 11.734 4.713 25.076 27.171 5.948 8.183 9.414 14.182 nan 12.595 5.476 8.920 8.651 9.024 9.282 9.393 6.984 3.819 3.619 4.776 1.282 2.205 3.726 4.910 1.847 2.370 2.508 3.074 327 chr1 249131468 249134067 + 0 NA intron (NM_024836, intron 1 of 3) CpG 390 NM_024836 79894 Hs.521151 NM_024836 ENSG00000171161 ZNF672 - zinc finger protein 672 protein-coding 10.665 10.807 8.941 12.900 11.998 5.738 4.125 5.037 0.491 5.797 2.872 6.784 17.016 5.215 0.144 7.566 10.611 15.083 21.591 15.997 13.063 15.660 9.162 23.442 23.302 5.421 5.695 8.179 9.459 6.944 8.289 1.867 3.821 10.760 7.663 7.014 9.821 4.665 2.489 7.611 5.290 1.692 2.986 4.125 6.784 1.459 4.818 1.331 3.811 2404 chr8 103724116 103760650 + 0 NA Intergenic Intergenic -74253 NM_005655 7071 Hs.435001 NM_005655 ENSG00000155090 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel like factor 10 protein-coding 1.705 nan nan 0.561 0.574 0.325 0.302 0.891 0.211 0.138 0.093 0.276 1.003 0.098 0.062 0.345 0.382 0.242 0.361 0.858 1.012 nan 0.485 0.629 0.643 0.592 nan 3.192 nan nan 0.817 0.359 0.429 0.317 0.415 0.687 nan 1.800 0.974 0.549 0.175 0.058 0.181 0.302 0.276 0.184 2.677 0.082 0.469 537 chr11 128631779 128661172 + 0 NA intron (NM_001167681, intron 5 of 9) AluSx1|SINE|Alu 65954 NM_000220 3758 Hs.527830 NM_000220 ENSG00000151704 KCNJ1 KIR1.1|ROMK|ROMK1 potassium voltage-gated channel subfamily J member 1 protein-coding 0.574 0.834 0.713 1.156 5.625 2.849 0.517 0.107 0.054 0.973 0.597 2.882 1.025 0.081 0.082 1.896 2.813 0.753 0.655 4.313 4.048 3.391 1.056 0.138 0.150 0.174 0.269 3.556 2.543 0.416 0.348 0.699 0.986 0.548 0.359 0.094 nan 2.530 1.395 0.659 0.216 0.071 0.125 0.517 2.882 0.020 0.076 0.202 0.033 807 chr14 69247371 69267221 + 0 NA intron (NM_004926, intron 1 of 1) intron (NM_004926, intron 1 of 1) 3335 NM_001244698 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 3.781 2.457 3.910 1.920 0.451 0.249 1.323 4.500 0.509 0.191 0.123 0.585 3.396 6.532 0.188 0.290 0.287 4.418 7.778 0.491 0.560 0.843 0.314 9.338 9.522 0.875 1.257 1.263 nan 0.857 0.488 0.332 0.425 0.758 0.654 0.684 1.339 1.011 nan 1.781 0.090 0.073 0.256 1.323 0.585 0.234 0.381 0.134 0.503 2503 chr9 35769774 35779847 + 0 NA Intergenic Intergenic -17596 NM_003995 4882 Hs.78518 NM_000907 ENSG00000159899 NPR2 AMDM|ANPRB|ANPb|ECDM|GUC2B|GUCY2B|NPRB|NPRBi|SNSK natriuretic peptide receptor 2 protein-coding 1.060 nan 1.279 2.847 2.952 1.344 1.458 0.334 0.143 1.824 1.198 4.041 4.825 0.074 0.122 0.459 0.509 0.410 0.531 2.985 3.800 5.891 2.108 0.477 0.406 1.311 1.672 4.993 4.507 1.292 1.032 0.514 0.721 2.773 3.199 0.517 1.994 6.228 2.803 2.121 2.191 0.976 1.761 1.458 4.041 0.278 2.882 0.424 0.316 1874 chr3 189507049 189525612 + 0 NA intron (NM_001329146, intron 1 of 10) intron (NM_001329146, intron 1 of 10) 8881 NM_001114980 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 1.285 1.353 0.960 0.247 0.472 0.224 0.284 0.284 0.078 0.127 0.174 0.084 0.789 0.036 0.068 0.266 0.172 0.317 0.873 0.403 0.444 4.601 1.387 0.317 0.339 0.156 0.292 0.629 0.633 0.659 0.293 0.096 0.183 1.311 1.137 0.537 1.104 0.544 0.542 0.054 0.091 0.163 0.146 0.284 0.084 0.020 0.068 0.022 0.203 1338 chr19 46217899 46234963 + 0 NA intron (NM_001329633, intron 1 of 1) AluJo|SINE|Alu 323 NM_001329634 23403 Hs.128702 NM_001080469 ENSG00000177051 FBXO46 20D7-FC4|FBXO34L|Fbx46 F-box protein 46 protein-coding 1.857 1.188 1.825 1.199 1.461 0.638 1.012 0.825 0.264 0.744 0.454 1.234 2.295 1.623 0.141 0.968 1.621 1.598 2.452 2.218 2.809 3.184 1.139 6.583 7.171 2.350 3.242 3.351 3.928 1.911 1.405 1.216 2.062 1.149 1.127 1.976 5.057 1.898 0.800 0.887 1.411 0.379 0.299 1.012 1.234 0.868 0.775 0.371 1.357 1417 chr2 24618493 24628531 + 0 NA Intergenic Intergenic -40115 NM_147152 50618 Hs.432562 NM_006277 ENSG00000198399 ITSN2 PRO2015|SH3D1B|SH3P18|SWA|SWAP intersectin 2 protein-coding 0.871 0.858 0.723 2.367 0.455 0.223 1.733 0.097 0.147 0.954 0.554 0.843 3.523 0.141 0.152 0.924 0.777 0.487 0.590 0.906 1.134 6.751 3.349 0.897 1.053 0.314 0.500 4.772 nan 0.626 0.376 0.836 0.988 0.711 0.876 0.233 0.462 3.607 1.747 0.097 0.570 0.086 0.134 1.733 0.843 0.048 0.665 0.729 0.099 1920 chr4 142251825 142267442 + 0 NA Intergenic LOR1-int|LTR|ERV1 -5862 NR_121625 100507639 Hs.535010 NR_121625 LOC100507639 - uncharacterized LOC100507639 ncRNA 0.917 0.885 0.803 0.135 0.185 0.123 0.073 0.106 0.062 0.051 0.113 0.139 0.233 0.770 0.065 0.214 0.158 0.230 0.527 0.289 0.356 2.077 0.799 0.243 0.222 0.127 0.173 0.480 0.562 0.270 0.119 0.107 0.246 1.495 1.385 2.809 5.878 0.487 0.463 0.003 0.067 0.218 0.021 0.073 0.139 0.013 0.019 0.032 2.051 1294 chr19 36234844 36237952 + 0 NA promoter-TSS (NM_144987) promoter-TSS (NM_144987) -55 NR_110171 199746 Hs.351558 NM_144987 ENSG00000161265 U2AF1L4 U2AF1-RS3|U2AF1L3|U2AF1L3V1|U2AF1RS3|U2af26 U2 small nuclear RNA auxiliary factor 1 like 4 protein-coding 5.939 2.795 5.021 9.883 4.874 3.024 3.768 2.573 0.054 1.653 0.836 3.908 26.110 4.633 0.132 2.707 3.729 4.071 6.003 5.791 5.344 6.836 3.652 12.948 13.713 4.210 5.142 6.986 10.111 nan 4.458 3.729 5.265 5.319 5.578 4.201 6.419 3.756 1.791 3.092 4.878 0.644 1.662 3.768 3.908 1.250 2.735 2.854 2.220 805 chr14 68399302 68417219 + 0 NA intron (NM_001321809, intron 7 of 11) intron (NM_001321809, intron 7 of 11) 117951 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding nan nan 0.904 0.200 0.376 0.143 0.395 3.080 0.153 0.062 0.101 0.221 0.903 4.408 0.173 0.256 0.224 0.525 2.237 0.400 0.525 0.310 0.146 nan 0.532 0.437 0.745 0.498 nan 0.631 0.359 0.280 0.413 0.429 0.347 0.207 0.606 1.765 1.024 0.698 0.183 0.095 0.125 0.395 0.221 0.011 0.078 0.132 0.084 1937 chr5 1289186 1302213 + 0 NA promoter-TSS (NM_001193376) promoter-TSS (NM_001193376) -537 NM_001193376 7015 Hs.492203 NM_198253 ENSG00000164362 TERT CMM9|DKCA2|DKCB4|EST2|PFBMFT1|TCS1|TP2|TRT|hEST2|hTRT telomerase reverse transcriptase protein-coding 0.640 1.060 2.753 0.846 0.767 0.369 0.343 0.221 0.137 0.456 0.190 1.652 0.736 0.499 0.089 5.554 4.557 0.216 nan 8.936 6.922 2.774 0.772 0.276 0.325 0.232 0.528 nan 4.489 nan 0.762 0.530 0.432 0.748 0.645 0.207 0.492 3.186 nan 2.375 2.755 0.108 0.187 0.343 1.652 0.595 1.249 0.168 0.170 2395 chr8 99075809 99098483 + 0 NA intron (NM_001170806, intron 1 of 1) L1MC3|LINE|L1 10396 NM_001170806 203111 Hs.171455 NM_173549 ENSG00000177459 ERICH5 C8orf47 glutamate rich 5 protein-coding nan 0.915 1.279 2.474 0.966 0.464 0.197 0.158 0.171 0.381 0.408 0.876 1.423 0.147 0.104 0.220 0.178 0.297 nan 1.112 1.013 7.424 2.639 0.530 0.538 0.238 0.447 2.587 3.272 0.441 0.198 0.397 0.401 2.140 1.403 0.401 0.925 2.478 1.023 0.034 0.208 0.596 0.073 0.197 0.876 0.013 0.640 0.101 0.239 2314 chr7 121941449 121950900 + 0 NA non-coding (NR_036484, exon 3 of 7) non-coding (NR_036484, exon 3 of 7) -1609 NM_001160264 389549 Hs.553970 NM_001024613 ENSG00000128610 FEZF1 FEZ|HH22|ZNF312B FEZ family zinc finger 1 protein-coding 3.048 0.761 1.121 0.445 0.908 0.524 1.041 0.071 0.089 0.215 0.240 1.565 2.666 0.034 0.099 6.024 8.588 2.392 2.197 2.390 1.492 1.711 0.608 0.481 0.421 0.073 0.172 0.390 0.568 1.612 1.729 0.247 0.463 3.411 2.115 0.390 0.765 0.811 0.495 0.041 0.624 1.041 1.677 1.041 1.565 1.385 0.054 0.031 0.146 1336 chr19 45293987 45313736 + 0 NA TTS (NM_001130852) TTS (NM_001130852) -8455 NM_005581 4059 Hs.625725 NM_005581 ENSG00000187244 BCAM AU|CD239|LU|MSK19 basal cell adhesion molecule (Lutheran blood group) protein-coding 0.667 0.816 1.208 1.298 0.416 0.203 0.562 0.167 0.150 0.773 0.478 0.965 0.982 0.964 0.109 0.636 1.252 0.568 0.883 1.193 1.441 4.804 1.353 0.616 0.761 0.167 0.400 5.435 5.594 0.433 0.241 0.524 0.757 0.364 0.403 0.273 0.553 2.535 1.168 0.056 0.082 0.058 0.024 0.562 0.965 0.141 1.137 0.210 0.101 1394 chr2 3604829 3625778 + 0 NA Intergenic AluSx|SINE|Alu -7550 NM_001011 6201 Hs.534346 NM_001011 ENSG00000171863 RPS7 DBA8|S7 ribosomal protein S7 protein-coding 2.309 1.341 1.793 1.686 1.802 0.886 1.536 0.690 0.123 0.878 0.453 2.173 3.554 1.741 0.156 1.871 1.723 2.369 3.661 3.156 2.861 3.476 1.624 2.405 2.372 1.885 2.752 5.100 6.394 3.232 3.771 1.395 1.974 1.079 1.196 3.387 4.492 2.030 1.144 0.705 2.903 0.164 0.585 1.536 2.173 0.859 1.580 0.311 1.457 347 chr10 18895999 18906803 + 0 NA intron (NM_182543, intron 5 of 10) intron (NM_182543, intron 5 of 10) 39165 NM_182543 221078 Hs.396175 NM_182543 ENSG00000241058 NSUN6 4933414E04Rik|ARL5B-AS1|NOPD1 NOP2/Sun RNA methyltransferase family member 6 protein-coding nan 1.006 0.816 0.721 0.457 0.222 0.119 0.903 0.373 0.232 0.173 0.397 0.731 0.059 0.083 0.430 0.450 0.288 0.487 0.240 0.304 6.388 2.900 0.244 0.183 1.012 1.451 1.704 1.537 0.248 0.186 0.136 0.164 0.217 0.365 0.348 0.879 0.618 0.366 0.067 0.057 0.026 0.073 0.119 0.397 0.073 1.240 0.018 0.140 2479 chr9 13932604 13983382 + 0 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 30023 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA nan nan 0.854 0.229 1.288 0.716 0.395 0.190 0.083 0.290 0.275 0.431 0.815 0.047 0.084 0.224 0.131 1.031 1.768 0.600 0.736 1.570 0.644 0.118 0.115 4.128 6.005 0.792 0.712 0.366 0.164 0.155 0.212 1.092 0.890 0.200 0.358 1.547 1.118 4.466 0.131 0.298 0.107 0.395 0.431 0.015 0.070 0.051 0.051 1928 chr4 185358015 185398945 + 0 NA intron (NM_002199, intron 1 of 8) intron (NM_002199, intron 1 of 8) 17246 NM_002199 3660 Hs.654566 NM_002199 ENSG00000168310 IRF2 IRF-2 interferon regulatory factor 2 protein-coding nan 1.358 nan 0.573 0.871 0.480 0.643 0.987 0.126 0.314 0.203 1.053 1.531 0.622 0.084 0.820 0.927 5.461 6.200 1.270 1.172 0.650 0.263 0.866 0.844 0.097 0.138 1.650 2.388 0.748 0.597 1.928 2.614 0.234 0.256 0.446 0.548 0.796 0.531 0.784 1.224 0.053 0.422 0.643 1.053 0.071 0.318 1.180 0.203 1358 chr19 49370813 49381160 + 0 NA intron (NM_014330, intron 1 of 2) MSR1|Satellite|Satellite 337 NM_014330 23645 Hs.631593 NM_014330 ENSG00000087074 PPP1R15A GADD34 protein phosphatase 1 regulatory subunit 15A protein-coding 2.287 2.892 2.273 1.277 3.021 1.728 5.052 3.239 0.357 0.508 0.309 1.389 3.903 3.131 0.218 0.997 1.712 3.203 5.109 2.955 2.499 4.231 2.271 4.941 5.482 1.834 2.490 2.589 4.350 1.973 2.179 1.180 1.638 2.916 3.125 2.174 5.862 2.662 1.775 1.921 6.466 0.246 0.829 5.052 1.389 0.818 1.905 0.403 1.162 1457 chr2 88314527 88325308 + 0 NA Intergenic Intergenic -34608 NM_001024457 400966 Hs.728970 NM_001024457 ENSG00000187627 RGPD1 RGP1|RGPD2|RanBP2L2 RANBP2-like and GRIP domain containing 1 protein-coding nan 1.102 nan 1.282 0.812 0.357 0.723 0.236 0.196 0.498 0.304 1.449 1.801 1.070 0.123 3.393 3.785 2.396 2.587 2.164 2.431 2.789 1.965 8.980 9.556 0.220 0.468 0.197 0.216 2.620 2.445 3.415 3.641 0.659 0.460 3.613 3.665 1.431 1.011 0.564 0.181 0.088 0.305 0.723 1.449 0.354 0.095 1.148 1.159 239 chr1 167186973 167206915 + 0 NA intron (NM_002697, intron 1 of 15) intron (NM_002697, intron 1 of 15) 6821 NR_037163 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 3.182 nan 3.849 1.494 1.778 0.988 1.919 1.126 0.275 1.748 0.835 1.724 3.431 1.177 0.120 3.326 3.427 3.019 4.143 4.274 nan 2.962 1.668 3.106 3.287 2.228 2.924 2.751 nan 3.104 2.965 2.313 4.546 2.561 3.157 5.605 9.011 1.189 0.886 1.254 3.550 0.719 1.111 1.919 1.724 0.606 0.908 2.234 3.393 770 chr14 33400162 33417414 + 0 NA intron (NM_173159, intron 1 of 11) intron (NM_173159, intron 1 of 11) 329 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 3.467 0.820 2.872 0.564 0.573 0.353 0.810 0.722 0.168 0.592 0.410 2.402 2.283 4.916 0.181 0.189 0.131 0.247 0.391 1.839 1.471 0.732 0.388 0.763 0.700 0.131 0.243 1.167 1.999 1.924 1.822 0.170 0.444 0.349 0.278 0.281 0.526 1.004 0.690 0.114 0.556 0.066 0.868 0.810 2.402 0.028 1.272 0.074 0.071 1650 chr20 61605456 61618006 + 0 NA Intergenic Intergenic 26656 NM_080606 128408 Hs.551230 NM_080606 ENSG00000125533 BHLHE23 BETA4|BHLHB4|Beta3b|bA305P22.3 basic helix-loop-helix family member e23 protein-coding 1.306 2.110 3.413 0.171 0.839 0.485 2.006 0.084 0.025 0.264 0.304 5.976 0.715 0.096 0.074 1.664 nan 0.157 0.239 2.068 1.680 0.771 0.235 0.439 0.467 0.186 0.355 0.216 0.251 2.145 2.384 0.682 0.839 0.381 0.247 0.214 0.261 1.534 1.111 0.921 0.341 0.076 0.254 2.006 5.976 0.291 0.120 0.221 0.117 1203 chr18 53066819 53093924 + 0 NA intron (NM_001330604, intron 5 of 19) intron (NM_001330604, intron 5 of 19) -9145 NM_001306208 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding nan 1.028 1.287 0.214 0.696 0.364 2.278 1.260 0.093 1.023 0.683 1.091 1.362 2.378 0.110 0.615 0.505 4.367 5.518 2.832 2.412 6.579 2.869 0.737 0.868 3.187 3.553 0.645 0.641 2.785 2.286 1.131 1.656 5.847 6.012 0.337 0.652 nan 3.157 0.664 1.185 1.704 0.926 2.278 1.091 1.030 2.653 1.380 0.119 1865 chr3 181952917 181979259 + 0 NA Intergenic MIR3|SINE|MIR 238062 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 1.251 1.365 0.942 1.421 0.369 0.226 0.214 0.128 0.146 0.215 0.196 0.246 0.519 2.830 0.102 0.271 0.227 0.261 0.268 0.420 0.532 1.255 0.456 0.113 0.137 0.765 1.227 1.011 1.056 0.938 0.573 0.123 0.249 0.302 0.309 0.177 0.230 1.073 0.721 0.064 0.145 0.047 1.139 0.214 0.246 0.044 0.188 0.068 0.089 1044 chr17 30426732 30455397 + 0 NA Intergenic Intergenic -28409 NM_001033567 55288 Hs.655325 NM_018307 ENSG00000126858 RHOT1 ARHT1|MIRO-1|MIRO1 ras homolog family member T1 protein-coding nan 1.068 0.937 0.245 1.977 1.033 0.248 0.753 0.203 1.329 0.768 1.384 1.061 0.750 0.248 0.608 0.824 0.417 0.672 nan 1.175 3.034 0.923 0.638 0.676 0.675 1.024 0.754 1.083 nan 0.718 0.362 0.628 1.941 1.433 0.903 1.605 3.328 1.551 0.672 0.243 0.353 0.291 0.248 1.384 0.239 0.190 0.201 0.445 1426 chr2 28657846 28661804 + 0 NA Intergenic Intergenic -42286 NR_103831 403150 Hs.562970 NR_103831 ENSG00000229951 FLJ31356 - uncharacterized protein FLJ31356 ncRNA 2.176 3.588 1.753 2.510 0.195 0.040 0.258 0.095 0.161 0.146 0.126 0.153 8.749 0.060 0.115 0.348 0.610 0.897 4.414 0.497 0.350 0.958 0.414 0.479 0.513 0.389 0.852 3.006 nan 0.640 0.569 0.352 0.799 0.499 0.335 0.236 0.325 1.225 0.826 2.054 0.520 0.024 0.160 0.258 0.153 3.538 2.963 0.327 0.093 2178 chr6 134266551 134279819 + 0 NA promoter-TSS (NM_001253676) promoter-TSS (NM_001253676) -123 NM_001253676 9519 Hs.486507 NM_004865 ENSG00000028839 TBPL1 MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2 TATA-box binding protein like 1 protein-coding 1.846 1.209 4.567 1.290 1.043 0.540 1.667 0.875 0.157 0.936 0.541 1.155 3.574 2.035 0.141 1.586 1.585 1.321 1.716 3.340 2.679 nan 1.628 1.417 1.531 2.053 2.854 0.901 0.937 4.679 4.689 1.135 1.535 5.206 5.513 1.306 nan 1.894 0.791 0.350 1.567 1.522 0.577 1.667 1.155 0.701 1.405 0.396 0.577 1525 chr2 208173076 208185117 + 0 NA Intergenic Intergenic -44948 NR_031633 100302130 NR_031633 ENSG00000221628 MIR1302-4 MIRN1302-4|hsa-mir-1302-4 microRNA 1302-4 ncRNA 1.161 nan 1.230 0.679 4.910 2.838 0.768 0.219 0.013 0.181 0.098 1.240 1.294 0.036 0.122 0.465 0.437 0.289 0.344 0.298 0.254 0.267 0.089 1.104 1.344 3.911 4.182 0.845 0.517 0.834 0.713 0.203 0.204 1.483 2.389 0.453 1.014 0.289 0.274 1.009 0.613 0.483 0.518 0.768 1.240 0.686 0.885 0.066 0.174 2299 chr7 105305042 105332842 + 0 NA intron (NM_001318229, intron 1 of 9) intron (NM_001318229, intron 1 of 9) 667 NM_138495 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding nan 1.270 1.778 0.632 0.650 0.280 0.454 0.635 0.093 0.616 0.377 0.397 1.429 0.106 0.149 0.854 0.800 0.744 0.858 1.124 0.892 2.139 0.420 0.317 0.326 0.623 1.148 1.449 1.603 0.727 0.699 0.821 1.298 0.692 0.877 0.807 nan 2.493 1.517 3.390 1.486 0.131 0.244 0.454 0.397 0.144 0.356 0.943 0.329 907 chr15 99384470 99451474 + 0 NA intron (NM_000875, intron 2 of 20) intron (NM_000875, intron 2 of 20) 90317 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA nan nan nan 0.388 0.323 0.203 0.770 0.918 0.199 0.448 0.295 0.480 1.240 6.013 0.181 1.183 1.236 1.011 1.521 0.613 0.743 nan 0.142 2.457 2.554 1.437 2.047 0.546 0.624 nan 1.129 0.851 1.110 0.372 0.568 0.558 nan 0.633 0.484 0.108 0.670 0.047 0.194 0.770 0.480 0.246 1.355 0.634 0.266 640 chr12 72055219 72060192 + 0 NA promoter-TSS (NM_031435) promoter-TSS (NM_031435) 28 NM_031435 83591 Hs.245798 NM_031435 ENSG00000173451 THAP2 - THAP domain containing 2 protein-coding nan 2.553 2.837 3.884 3.964 2.453 2.689 2.484 0.208 2.359 1.444 4.664 10.866 3.134 0.135 5.375 5.903 4.988 7.362 11.015 9.424 8.871 4.591 20.926 22.250 5.827 5.930 nan 13.300 5.566 6.921 4.773 7.778 2.918 2.955 7.238 5.930 nan 2.236 1.162 4.848 0.270 2.315 2.689 4.664 1.487 2.700 2.985 2.484 1639 chr20 55944631 56078183 + 0 NA Intergenic Intergenic 44953 NM_001291780 55544 Hs.236361 NM_017495 ENSG00000132819 RBM38 HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2 RNA binding motif protein 38 protein-coding 1.357 1.507 1.082 0.747 0.534 0.296 0.521 0.313 0.124 0.277 0.192 0.433 0.977 0.216 0.093 5.685 nan 1.822 1.596 0.918 0.908 1.400 0.431 7.994 8.175 0.297 0.522 1.375 1.999 0.607 0.467 4.301 6.682 0.191 0.171 0.361 0.488 1.137 0.876 0.661 0.500 0.030 0.244 0.521 0.433 0.261 0.477 5.265 0.087 812 chr14 73469021 73477433 + 0 NA intron (NM_021260, intron 2 of 11) AluSz|SINE|Alu -19563 NM_178441 53349 Hs.335106 NM_021260 ENSG00000165861 ZFYVE1 DFCP1|PPP1R172|SR3|TAFF1|ZNFN2A1 zinc finger FYVE-type containing 1 protein-coding 1.462 0.700 0.878 0.166 0.301 0.231 0.327 0.315 0.210 0.135 0.113 0.185 0.423 0.118 0.186 0.309 0.252 0.362 0.580 0.517 0.558 0.592 0.142 0.617 0.730 0.432 0.607 0.529 nan 0.802 0.521 0.305 0.262 0.258 0.238 0.566 1.004 4.644 nan 0.113 0.325 0.055 0.347 0.327 0.185 0.104 0.302 0.065 0.323 196 chr1 155157105 155166739 + 0 NA exon (NM_001204286, exon 2 of 9) exon (NM_001204286, exon 2 of 9) 784 NM_001018016 4582 Hs.89603 NM_002456 ENSG00000185499 MUC1 ADMCKD|ADMCKD1|CA 15-3|CD227|EMA|H23AG|KL-6|MAM6|MCD|MCKD|MCKD1|MUC-1|MUC-1/SEC|MUC-1/X|MUC1/ZD|PEM|PEMT|PUM mucin 1, cell surface associated protein-coding 4.247 nan 2.233 3.060 4.982 2.714 5.437 1.857 0.550 1.576 0.768 5.600 12.316 5.243 0.225 3.228 5.056 2.237 3.950 7.172 6.789 4.076 1.547 2.106 2.378 2.323 3.246 6.658 11.037 1.704 1.774 5.081 8.372 5.250 3.560 2.924 2.654 2.474 1.419 5.772 7.431 1.417 2.097 5.437 5.600 1.923 3.422 9.286 0.615 340 chr10 11044191 11079357 + 0 NA intron (NM_001326345, intron 1 of 13) intron (NM_001326345, intron 1 of 13) 1055 NM_001326345 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP, Elav-like family member 2 protein-coding nan 0.874 0.470 0.069 0.403 0.252 0.377 0.164 0.119 0.322 0.158 0.047 1.179 2.756 0.113 2.212 2.493 2.898 2.510 0.790 0.798 3.947 0.856 0.652 0.642 0.582 0.783 0.121 0.119 0.294 0.355 0.904 2.013 0.092 0.052 0.143 0.151 0.087 0.167 0.172 0.215 0.011 0.249 0.377 0.047 0.011 0.014 1.415 0.021 1185 chr18 45215197 45230487 + 0 NA Intergenic Intergenic 234128 NM_005901 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding nan 0.868 1.070 0.087 0.296 0.180 0.635 0.069 0.053 0.052 0.076 0.110 0.319 0.021 0.093 0.382 0.189 0.148 0.240 0.535 0.525 0.824 0.279 0.116 0.156 0.083 0.185 0.187 0.170 0.318 0.144 0.156 0.091 0.127 0.239 0.755 nan 0.496 0.748 0.018 0.052 0.037 0.036 0.635 0.110 0.007 0.013 0.013 3.545 1057 chr17 36979281 36983577 + 0 NA promoter-TSS (NR_039880) promoter-TSS (NR_039880) 174 NM_017748 54883 Hs.406223 NM_017748 ENSG00000273559 CWC25 CCDC49 CWC25 spliceosome associated protein homolog protein-coding nan 3.894 3.298 2.533 7.262 4.066 3.815 2.496 0.262 2.286 1.001 4.065 7.979 2.203 0.138 6.149 4.987 7.644 11.588 nan 5.157 8.451 7.435 23.600 26.457 3.890 4.337 9.056 13.767 nan 6.793 2.937 3.390 7.611 8.186 12.499 11.406 3.267 2.516 2.436 2.058 0.648 1.671 3.815 4.065 1.789 2.238 1.153 2.678 363 chr10 71326829 71340701 + 0 NA promoter-TSS (NM_020999) promoter-TSS (NM_020999) -555 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 0.334 nan 11.071 0.102 0.153 0.092 0.139 0.064 0.023 0.057 0.047 0.439 0.573 0.031 0.072 0.226 0.244 0.074 0.096 5.604 5.167 0.170 0.074 0.049 0.032 0.061 0.109 0.230 nan 0.158 0.077 0.091 0.087 0.054 0.080 0.089 nan 0.188 0.197 0.032 0.013 0.021 0.023 0.139 0.439 0.028 0.014 0.021 70 chr1 28989356 28996831 + 0 NA Intergenic AluSc8|SINE|Alu -2147 NM_001319674 10691 Hs.632373 NM_006582 ENSG00000162419 GMEB1 P96PIF|PIF96 glucocorticoid modulatory element binding protein 1 protein-coding 4.171 2.545 nan 4.444 4.017 2.141 3.319 1.542 0.581 1.445 0.814 2.240 5.701 3.329 0.180 3.258 3.887 3.389 5.207 7.783 7.849 3.762 1.801 7.425 7.667 6.756 7.784 3.820 5.497 5.643 5.211 2.407 4.040 1.861 2.111 3.842 7.114 2.539 1.331 3.803 2.564 0.448 1.403 3.319 2.240 0.919 1.545 1.313 2.433 726 chr13 75957828 75961108 + 0 NA intron (NM_014832, intron 1 of 20) intron (NM_014832, intron 1 of 20) 96836 NM_001286658 9882 Hs.210891 NM_014832 ENSG00000136111 TBC1D4 AS160|NIDDM5 TBC1 domain family member 4 protein-coding nan 0.991 0.725 0.738 2.733 1.170 0.317 0.124 0.194 1.289 0.860 0.879 2.485 0.099 0.094 4.251 5.366 0.544 0.544 1.139 1.874 16.723 13.326 0.089 0.174 0.192 0.227 1.332 1.283 nan 0.195 1.653 3.189 2.383 1.755 0.457 nan 1.776 0.787 0.867 0.085 0.195 0.317 0.879 0.028 0.155 1.586 0.113 2051 chr5 180228794 180238993 + 0 NA intron (NM_001114617, intron 2 of 2) intron (NM_001114617, intron 2 of 2) 2924 NM_001114618 4245 Hs.519818 NM_002406 ENSG00000131446 MGAT1 GLCNAC-TI|GLCT1|GLYT1|GNT-1|GNT-I|GnTI|MGAT mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase protein-coding 2.443 2.468 4.202 2.165 1.529 0.837 0.812 1.707 0.141 1.534 0.659 2.604 7.621 3.665 0.119 2.296 2.516 3.249 4.621 3.504 3.376 3.191 1.578 3.216 3.372 2.346 3.313 3.609 4.336 2.569 2.437 1.625 2.473 2.928 2.823 2.812 5.731 1.351 0.717 1.504 2.866 0.667 1.111 0.812 2.604 0.811 1.987 1.506 2.262 1207 chr18 53441770 53453191 + 0 NA Intergenic CpG 139950 NR_110755 101927273 Hs.434335 NR_110755 ENSG00000260930 LINC01416 - long intergenic non-protein coding RNA 1416 ncRNA nan 0.755 0.803 0.306 0.299 0.295 0.887 1.160 0.070 0.669 0.545 0.900 0.674 3.195 0.116 0.689 0.461 0.877 0.604 1.069 0.913 3.757 2.010 1.262 1.446 2.310 2.584 0.618 0.766 0.972 0.861 0.531 0.777 3.133 2.939 0.298 0.474 6.467 3.764 0.117 0.343 0.641 0.237 0.887 0.900 0.143 0.500 0.219 0.171 2143 chr6 49877253 49883543 + 0 NA Intergenic Intergenic -35589 NM_001205220 167 Hs.109620 NM_001131 ENSG00000124812 CRISP1 AEGL1|ARP|CRISP-1|HEL-S-57|HSCRISP1D|HSCRISP1G|HUMARP cysteine rich secretory protein 1 protein-coding 0.775 1.236 1.937 0.668 1.601 0.878 1.380 0.181 0.127 0.153 0.104 0.800 2.532 0.066 0.120 2.728 1.822 7.099 2.791 0.490 0.647 0.219 0.124 2.042 2.177 0.268 0.354 2.853 nan 0.213 0.124 1.405 2.299 0.286 0.251 0.462 1.454 0.357 0.537 0.312 1.164 0.074 0.151 1.380 0.800 0.179 0.695 1.030 0.275 41 chr1 15809501 15819789 + 0 NA intron (NM_015849, intron 7 of 7) AluJr|SINE|Alu 12049 NM_015849 51032 Hs.631871 NM_015849 ENSG00000215704 CELA2B ELA2B chymotrypsin like elastase family member 2B protein-coding 1.085 0.715 nan 3.102 0.293 0.250 0.213 0.115 0.032 0.076 0.065 0.316 1.282 0.103 0.098 0.692 0.932 0.287 0.288 7.205 5.362 1.590 0.550 0.357 nan 0.362 nan 4.494 5.449 nan 0.723 0.230 0.305 0.083 0.049 0.499 1.230 0.736 0.625 0.892 1.010 0.009 0.054 0.213 0.316 0.095 0.327 0.029 0.205 899 chr15 90539813 90553622 + 0 NA intron (NM_198526, intron 1 of 4) intron (NM_198526, intron 1 of 4) 1994 NM_198526 374655 Hs.459311 NM_198526 ENSG00000140548 ZNF710 - zinc finger protein 710 protein-coding nan nan nan 1.001 1.884 0.951 1.316 0.934 0.164 1.040 0.592 3.683 3.765 1.067 0.101 2.073 2.897 1.819 2.247 2.491 1.930 nan 0.438 8.854 9.173 0.812 1.242 3.673 4.154 nan 1.659 1.620 2.863 0.914 0.674 1.139 nan 0.756 0.498 0.981 1.678 0.219 0.571 1.316 3.683 0.525 0.867 0.851 0.313 2458 chr8 145702676 145716350 + 0 NA intron (NM_032902, intron 2 of 12) intron (NM_032902, intron 2 of 12) 5779 NM_001329444 84988 Hs.521937 NM_032902 ENSG00000160972 PPP1R16A MYPT3 protein phosphatase 1 regulatory subunit 16A protein-coding 1.744 0.943 nan 1.405 1.588 0.489 1.188 0.350 0.211 0.252 0.109 1.212 3.411 0.601 0.097 1.133 1.471 1.370 1.944 nan 2.506 nan 0.488 1.649 1.591 0.885 1.396 1.006 1.280 0.915 1.078 5.373 3.819 0.615 0.637 0.793 1.430 1.254 0.536 0.522 1.234 0.105 0.915 1.188 1.212 0.240 0.954 0.800 0.226 178 chr1 151039821 151045967 + 0 NA promoter-TSS (NM_001323913) promoter-TSS (NM_001323913) -160 NM_001323912 126626 Hs.15671 NM_144618 ENSG00000143458 GABPB2 GABPB-2 GA binding protein transcription factor beta subunit 2 protein-coding nan 6.675 4.182 1.560 5.187 3.000 4.900 2.567 0.917 3.237 1.845 4.073 16.594 4.084 0.188 5.772 5.842 6.559 9.216 9.038 nan 7.968 4.261 5.583 5.908 4.886 5.399 1.910 2.226 6.232 5.760 7.765 9.346 6.897 7.160 4.943 6.961 2.882 1.330 2.908 7.662 2.025 2.852 4.900 4.073 1.329 0.153 3.996 2.558 52 chr1 23340403 23348418 + 0 NA Intergenic AluSz|SINE|Alu -1531 NM_015013 23028 Hs.591518 NM_015013 ENSG00000004487 KDM1A AOF2|BHC110|CPRF|KDM1|LSD1 lysine demethylase 1A protein-coding 5.435 2.038 nan 4.223 2.523 1.400 2.527 1.061 0.241 1.975 0.809 1.541 4.917 1.775 0.188 3.634 3.940 2.507 3.721 6.087 5.150 4.011 1.512 8.136 7.625 4.106 5.846 4.116 8.846 6.514 8.986 3.012 5.503 2.203 1.957 6.934 5.421 2.339 1.585 2.429 2.438 0.358 1.460 2.527 1.541 0.836 1.123 1.740 1.554 1537 chr2 216971851 216983715 + 0 NA exon (NM_021141, exon 2 of 21) exon (NM_021141, exon 2 of 21) 3763 NM_021141 7520 Hs.388739 NM_021141 ENSG00000079246 XRCC5 KARP-1|KARP1|KU80|KUB2|Ku86|NFIV X-ray repair cross complementing 5 protein-coding nan 2.120 nan 2.825 3.559 1.689 2.686 1.712 0.095 1.336 0.668 2.988 5.654 2.195 0.103 5.181 4.041 4.784 6.777 4.813 5.412 4.515 2.861 8.494 9.866 3.891 4.810 6.626 nan 5.953 5.029 2.903 3.453 2.157 3.199 5.636 7.169 2.530 1.163 1.672 1.056 0.313 1.145 2.686 2.988 0.879 1.055 1.012 1.855 2230 chr7 13863204 13900185 + 0 NA Intergenic L2|LINE|L2 144445 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding nan 1.006 nan 0.188 0.856 0.367 0.691 1.587 0.158 2.959 1.305 0.643 0.947 0.071 0.147 nan 0.524 0.871 0.923 0.694 0.797 1.060 0.414 0.312 0.323 1.795 2.143 0.741 0.733 0.295 0.149 0.092 0.158 1.984 2.399 0.211 0.437 1.307 0.756 0.039 0.209 0.459 0.183 0.691 0.643 0.108 0.487 0.036 0.053 2601 chrX 153188456 153200560 + 0 NA TTS (NM_003491) TTS (NM_003491) -2794 NM_001164741 393 Hs.701324 NM_001666 ENSG00000089820 ARHGAP4 C1|RGC1|RhoGAP4|SrGAP4|p115 Rho GTPase activating protein 4 protein-coding 2.530 2.783 2.500 1.726 5.765 2.965 3.284 0.554 0.132 0.908 0.583 2.857 5.816 1.560 0.050 4.494 6.984 2.609 2.909 5.026 4.607 3.756 1.313 3.944 4.166 1.174 1.667 4.473 4.487 3.145 3.500 1.817 4.135 1.593 1.840 1.608 2.927 1.467 0.679 2.639 3.761 0.534 1.905 3.284 2.857 0.695 1.807 2.830 0.905 2421 chr8 124242512 124254051 + 0 NA intron (NM_032847, intron 3 of 5) intron (NM_032847, intron 3 of 5) 5357 NM_032847 84933 Hs.707401 NM_032847 ENSG00000189376 C8orf76 - chromosome 8 open reading frame 76 protein-coding nan nan 8.537 1.715 1.098 0.606 0.272 0.732 0.183 0.574 0.301 1.680 nan 0.486 0.101 0.679 0.778 1.082 1.466 2.569 2.739 1.643 0.630 nan nan 2.772 3.442 1.448 1.680 2.670 2.395 0.826 1.461 2.032 3.142 2.949 4.893 1.041 0.485 0.339 0.617 0.760 2.232 0.272 1.680 0.987 1.996 0.223 1.670 2398 chr8 102240966 102279971 + 0 NA Intergenic Intergenic -42176 NM_001267709 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 2.201 nan nan 2.867 4.755 2.652 0.491 0.150 0.095 0.563 0.356 3.946 11.410 0.032 0.075 0.355 0.285 0.182 0.238 3.515 3.514 nan 1.465 0.389 0.449 1.297 nan 12.479 nan nan 0.873 0.262 0.384 2.655 2.358 0.532 nan 3.054 1.549 2.707 2.727 0.817 0.299 0.491 3.946 0.545 1.254 0.089 0.270 1950 chr5 10518206 10538856 + 0 NA Intergenic Intergenic -6335 NR_134289 389273 Hs.519206 NR_134289 ENSG00000249160 LOC389273 - uncharacterized LOC389273 ncRNA nan nan nan 0.250 0.361 0.156 0.223 1.004 0.458 0.168 0.178 0.113 nan 0.073 0.088 1.246 0.754 2.553 1.809 0.565 0.638 0.285 0.094 1.398 1.327 nan 4.362 0.370 0.479 2.467 2.281 1.965 2.372 0.531 0.700 0.816 nan 0.975 0.751 0.071 0.167 0.120 0.053 0.223 0.113 0.497 0.707 2.005 1.098 1776 chr3 71074869 71116153 + 0 NA intron (NM_032682, intron 10 of 20) intron (NM_032682, intron 10 of 20) 18563 NM_001244813 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 0.879 0.628 1.591 0.891 0.751 0.369 0.319 0.345 0.039 0.672 0.351 0.642 1.033 0.031 0.067 0.301 0.226 1.937 nan 0.669 0.713 0.937 0.500 0.177 0.189 0.443 0.688 0.925 1.755 1.153 0.987 0.184 0.438 0.837 1.621 0.218 nan 0.835 0.522 0.038 0.360 0.188 0.235 0.319 0.642 0.087 0.644 0.110 0.117 1814 chr3 134651742 134667468 + 0 NA intron (NM_004441, intron 2 of 15) L2a|LINE|L2 145506 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 1.065 nan nan 0.247 0.772 0.386 0.694 0.108 0.204 0.148 0.113 0.137 0.601 0.014 0.060 0.228 0.144 0.270 0.267 0.741 0.628 6.065 2.438 0.229 0.246 0.390 0.554 0.340 0.483 nan 0.316 0.156 0.204 0.421 0.417 0.460 0.548 0.245 0.293 0.106 0.455 0.097 0.058 0.694 0.137 0.080 0.045 0.057 0.062 1589 chr20 21550150 21579456 + 0 NA intron (NR_109880, intron 1 of 3) intron (NR_109880, intron 1 of 3) 14141 NR_109880 101929625 Hs.542413 NR_109880 LINC01727 - long intergenic non-protein coding RNA 1727 ncRNA 0.748 1.031 nan 0.288 2.287 1.405 0.192 0.094 0.083 0.824 0.536 1.143 1.085 0.044 0.081 0.625 0.460 0.134 0.201 2.437 2.562 2.864 1.167 0.154 0.163 0.202 0.306 0.391 1.129 0.574 0.338 0.176 0.258 0.584 0.611 0.111 0.184 3.570 1.600 0.025 0.109 0.177 0.071 0.192 1.143 0.168 0.881 0.047 0.038 1097 chr17 56060511 56086739 + 0 NA Intergenic AluSx3|SINE|Alu -8000 NM_001330393 7716 Hs.463569 NM_007146 ENSG00000136451 VEZF1 DB1|ZNF161 vascular endothelial zinc finger 1 protein-coding 3.611 3.408 3.941 3.689 4.851 2.558 2.235 2.303 0.235 2.480 1.156 3.835 7.037 2.134 0.142 4.254 4.443 3.093 4.303 6.128 5.953 4.599 2.293 nan 7.686 3.072 3.755 nan nan 6.402 5.864 2.448 4.717 4.696 5.698 5.057 6.301 2.335 1.149 1.438 2.756 1.578 2.273 2.235 3.835 1.123 1.770 1.731 2.587 2355 chr8 48421337 48453868 + 0 NA intron (NR_104581, intron 6 of 16) intron (NR_104581, intron 6 of 16) 213124 NM_005195 1052 Hs.440829 NM_005195 ENSG00000221869 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT/enhancer binding protein delta protein-coding 1.156 nan 0.722 0.327 0.318 0.232 0.177 1.419 0.134 0.179 0.141 0.302 0.683 0.982 0.116 0.527 0.360 3.291 5.564 0.532 0.602 0.459 0.144 0.618 0.669 0.418 0.772 0.467 0.436 0.344 0.160 0.228 0.473 0.437 0.554 0.308 0.644 0.883 0.734 0.055 0.091 0.099 0.095 0.177 0.302 0.018 0.667 0.097 0.170 1711 chr22 24176504 24192111 + 0 NA Intergenic Intergenic -3108 NM_001002862 91319 Hs.593679 NM_198440 ENSG00000099958 DERL3 C22orf14|IZP6|LLN2|derlin-3 derlin 3 protein-coding 1.760 nan 1.953 0.514 0.637 0.250 0.600 0.212 0.083 0.362 0.131 0.649 2.492 0.251 0.054 1.460 1.900 0.649 0.949 0.957 0.958 1.641 1.264 0.655 0.720 0.899 1.300 1.194 2.507 1.088 0.921 0.736 0.771 0.741 1.328 0.821 1.781 2.941 1.589 0.230 0.702 0.134 0.168 0.600 0.649 0.337 1.180 0.209 0.499 1955 chr5 32582518 32588057 + 0 NA promoter-TSS (NM_006713) promoter-TSS (NM_006713) -318 NM_006713 10923 Hs.229641 NM_006713 ENSG00000113387 SUB1 P15|PC4|p14 SUB1 homolog, transcriptional regulator protein-coding 3.377 3.655 nan 5.489 2.349 1.635 2.140 8.354 2.020 3.573 1.927 8.147 7.291 2.841 0.107 3.340 4.002 3.589 4.940 5.726 4.918 3.576 2.153 7.410 7.105 3.703 4.581 4.098 6.266 5.849 5.928 3.085 4.925 3.083 3.343 2.137 2.120 2.774 1.611 0.804 2.680 0.849 0.991 2.140 8.147 1.243 3.261 2.012 0.513 1329 chr19 44065136 44090493 + 0 NA intron (NM_006297, intron 2 of 16) AluJb|SINE|Alu 1916 NM_006297 7515 Hs.98493 NM_006297 ENSG00000073050 XRCC1 RCC X-ray repair cross complementing 1 protein-coding 1.567 1.547 1.744 1.097 1.487 0.778 0.819 0.545 0.165 0.978 0.347 1.711 1.276 0.552 0.139 0.695 0.868 1.027 1.502 1.492 1.444 4.346 2.434 2.254 2.397 1.286 1.744 1.818 2.655 1.433 1.123 0.842 1.197 2.005 1.966 1.330 1.625 3.647 1.846 0.604 0.670 0.394 0.394 0.819 1.711 0.249 0.699 0.292 0.332 2221 chr7 6047872 6061325 + 0 NA 5' UTR (NM_001326610, exon 2 of 5) 5' UTR (NM_001326610, exon 2 of 5) 4242 NM_001326611 7965 Hs.301613 NM_006303 ENSG00000106305 AIMP2 JTV-1|JTV1|P38 aminoacyl tRNA synthetase complex interacting multifunctional protein 2 protein-coding 3.219 2.210 2.889 2.085 3.431 1.825 1.410 2.359 0.720 1.114 0.739 2.300 nan 2.467 0.208 2.206 2.729 1.937 nan 2.449 2.287 nan 1.009 5.549 5.581 1.592 2.492 nan 3.956 1.576 1.680 3.131 3.190 2.254 2.864 2.118 3.273 2.005 1.004 3.538 3.611 0.418 2.270 1.410 2.300 0.456 1.490 1.387 0.768 1816 chr3 134944268 134959528 + 0 NA intron (NM_004441, intron 12 of 15) THE1C-int|LTR|ERVL-MaLR 437799 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 0.934 nan nan 0.305 4.390 2.174 0.722 0.116 0.063 0.215 0.178 0.232 1.334 0.021 0.067 0.633 0.468 0.642 0.815 1.053 1.075 5.974 1.782 0.279 0.278 0.243 0.383 1.532 1.051 nan 0.265 0.969 1.275 0.275 0.342 0.132 0.272 0.224 0.287 1.654 0.472 0.118 0.182 0.722 0.232 0.256 0.053 0.524 0.058 88 chr1 36928606 36938678 + 0 NA intron (NM_172313, intron 13 of 17) intron (NM_172313, intron 13 of 17) -3602 NM_031280 64960 Hs.352839 NM_031280 ENSG00000116898 MRPS15 DC37|MPR-S15|RPMS15|S15mt mitochondrial ribosomal protein S15 protein-coding 2.611 nan 1.954 3.900 1.739 0.865 4.627 1.185 0.139 0.905 0.401 3.612 3.404 1.194 0.135 3.000 3.847 3.774 3.607 3.844 3.331 nan 2.155 3.734 3.759 1.986 2.745 6.703 8.504 nan 2.680 4.022 5.824 1.183 1.008 2.875 2.926 2.758 nan 1.312 1.851 0.199 2.027 4.627 3.612 0.851 0.974 2.749 0.805 2349 chr8 37653787 37662876 + 0 NA intron (NM_032777, intron 1 of 18) intron (NM_032777, intron 1 of 18) 3930 NM_032777 25960 Hs.274136 NM_032777 ENSG00000020181 ADGRA2 GPR124|TEM5 adhesion G protein-coupled receptor A2 protein-coding 1.290 0.942 nan 0.889 0.519 0.141 0.770 3.304 0.507 0.311 0.182 0.481 1.086 0.466 0.092 6.364 8.174 3.536 3.297 1.893 1.835 0.976 0.307 0.762 0.697 0.742 1.083 0.353 0.401 0.529 0.593 1.392 2.959 0.389 0.323 0.770 1.430 0.757 0.773 0.128 0.264 0.106 0.061 0.770 0.481 0.695 1.348 0.256 197 chr1 155176128 155180181 + 0 NA promoter-TSS (NM_002455) promoter-TSS (NM_002455) -336 NM_002455 4580 Hs.490874 NM_002455 ENSG00000173171 MTX1 MTX|MTXN metaxin 1 protein-coding nan nan 5.782 5.056 5.533 3.206 7.245 2.302 0.718 3.754 1.544 7.490 24.545 8.642 0.263 7.602 10.786 5.677 8.384 11.997 nan 9.149 5.991 7.128 7.842 7.434 8.961 6.982 14.412 9.051 10.491 7.082 11.432 7.852 4.747 12.482 11.775 3.999 1.880 4.824 6.429 1.581 2.860 7.245 7.490 3.503 7.095 3.324 2.713 1192 chr18 46450106 46488704 + 0 NA promoter-TSS (NM_001190823) promoter-TSS (NM_001190823) -228 NM_001190823 4092 Hs.465087 NM_005904 ENSG00000101665 SMAD7 CRCS3|MADH7|MADH8 SMAD family member 7 protein-coding nan 1.342 2.081 3.166 1.174 0.573 3.540 0.936 0.206 0.981 0.364 3.028 2.581 0.637 0.075 2.179 3.068 2.664 4.365 2.414 2.536 3.525 1.343 1.287 1.280 0.634 0.914 1.670 1.942 1.155 1.078 1.322 2.641 2.761 3.012 0.733 nan 3.074 1.713 1.395 0.308 0.783 0.855 3.540 3.028 0.367 1.934 1.722 0.288 417 chr11 16625963 16629985 + 0 NA Intergenic CpG -130039 NM_033326 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box 6 protein-coding 1.313 nan 4.679 7.588 6.559 3.631 0.821 0.260 0.350 0.106 2.822 13.114 0.707 0.043 nan 0.586 12.252 15.944 14.151 10.694 0.680 0.165 1.391 1.089 2.661 3.143 3.232 4.152 1.501 0.906 0.923 2.042 0.803 0.409 0.431 1.398 1.417 nan 4.214 0.423 0.118 0.100 0.821 2.822 2.014 0.146 1.291 1857 chr3 180965106 180973959 + 0 NA intron (NR_075093, intron 2 of 4) intron (NR_075093, intron 2 of 4) 20007 NR_125730 103625684 NR_125730 ENSG00000207357 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 0.969 1.086 0.770 0.162 0.487 0.310 1.480 0.117 0.163 0.425 0.432 0.353 1.014 0.049 0.088 0.242 0.182 0.162 0.216 0.541 0.624 15.090 5.343 0.137 0.087 0.204 0.298 0.560 0.538 0.659 0.433 0.108 0.150 0.354 0.530 0.230 0.246 1.869 1.074 0.019 0.070 0.086 0.160 1.480 0.353 0.138 0.056 0.057 1269 chr19 13259382 13285339 + 0 NA Intergenic AluSg|SINE|Alu 11078 NM_004907 9592 Hs.501629 NM_004907 ENSG00000160888 IER2 ETR101 immediate early response 2 protein-coding 6.035 3.856 4.048 2.412 4.521 2.166 2.279 3.265 0.828 1.583 0.776 3.676 2.531 4.264 0.146 4.105 4.536 2.999 5.759 2.988 2.585 7.209 3.637 4.532 4.796 2.190 2.752 6.224 7.128 4.887 4.668 1.654 3.308 5.255 4.525 3.992 7.110 2.765 1.669 5.147 1.892 1.171 1.621 2.279 3.676 1.165 2.627 2.049 2.216 840 chr14 103565260 103595516 + 0 NA Intergenic Intergenic 8858 NR_138038 105370683 Hs.252904 NR_138038 LINC00677 C14orf74 long intergenic non-protein coding RNA 677 ncRNA 1.652 1.181 1.828 0.740 1.947 1.023 0.781 1.759 0.326 0.192 0.165 3.254 1.375 0.219 0.080 2.256 3.586 1.405 1.898 2.982 3.086 0.724 0.214 1.440 1.352 0.167 0.354 3.357 3.572 2.017 2.013 1.682 2.573 0.284 0.243 0.379 0.777 1.313 0.881 1.215 0.600 0.035 0.097 0.781 3.254 0.225 0.760 1.560 0.082 767 chr14 29205825 29273466 + 0 NA TTS (NM_005249) TTS (NM_005249) -2265 NR_026732 387978 Hs.633254 NR_026731 ENSG00000186960 LINC01551 C14orf23|c14_5148 long intergenic non-protein coding RNA 1551 ncRNA 1.126 0.995 0.752 0.640 3.151 1.713 2.948 2.551 0.214 0.589 0.434 3.640 5.637 0.282 0.116 0.312 0.234 0.209 0.244 7.142 6.754 3.570 1.186 0.203 0.189 5.581 7.589 1.464 2.012 3.555 4.048 0.129 0.207 5.265 4.414 2.687 2.433 3.515 1.939 0.563 3.744 1.137 3.881 2.948 3.640 0.276 0.126 0.069 0.820 1863 chr3 181552851 181640068 + 0 NA Intergenic Intergenic -73693 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 0.965 1.351 0.793 0.336 1.194 0.620 0.189 0.130 0.150 0.429 0.355 0.312 0.662 2.618 0.140 0.298 0.218 0.243 0.440 0.534 0.657 5.202 1.694 0.115 0.131 0.743 1.102 0.705 0.735 0.631 0.320 0.169 0.235 0.847 0.952 0.127 0.226 1.115 0.715 0.209 0.261 0.283 0.446 0.189 0.312 0.120 0.106 0.063 0.047 1090 chr17 48783241 48800781 + 0 NA Intergenic AluSx|SINE|Alu -4894 NM_001330330 51747 Hs.130293 NM_006107 ENSG00000108848 LUC7L3 CRA|CREAP-1|CROP|LUC7A|OA48-18|hLuc7A LUC7 like 3 pre-mRNA splicing factor protein-coding 4.127 2.861 nan 2.925 4.387 2.514 2.041 1.753 0.420 2.008 0.996 2.955 4.750 2.523 0.117 4.557 5.025 3.927 4.812 4.535 nan 4.723 3.278 10.996 11.894 3.071 3.736 5.868 nan 7.187 6.840 3.494 5.179 3.489 4.188 4.929 5.093 2.568 1.559 2.240 2.334 0.686 1.499 2.041 2.955 1.141 1.926 2.134 1.530 2599 chrX 137064152 137089259 + 0 NA Intergenic Intergenic 428359 NM_003413 7547 Hs.111227 NM_003413 ENSG00000156925 ZIC3 HTX|HTX1|VACTERLX|ZNF203 Zic family member 3 protein-coding 0.439 0.659 0.823 0.046 0.269 0.121 0.465 0.053 0.045 0.122 0.114 0.024 0.158 0.017 0.037 0.309 0.400 0.406 0.312 0.155 0.158 3.183 1.031 0.211 0.187 0.106 0.153 0.103 0.112 0.277 0.107 0.212 0.394 0.170 0.137 0.118 0.163 0.577 0.384 0.007 0.073 0.053 0.070 0.465 0.024 0.093 0.189 0.035 1180 chr18 42414587 42439458 + 0 NA intron (NM_001130110, intron 2 of 3) intron (NM_001130110, intron 2 of 3) 123109 NR_036203 100422829 NR_036203 ENSG00000265957 MIR4319 - microRNA 4319 ncRNA nan 0.990 1.428 0.468 0.613 0.445 0.986 0.215 0.039 0.540 0.444 0.699 2.825 0.031 0.063 0.688 0.696 0.607 0.592 1.573 1.376 1.519 0.476 0.054 0.078 0.912 1.420 0.569 0.546 1.261 1.139 0.208 0.328 2.048 2.710 0.475 nan 4.251 2.270 3.868 0.190 0.691 0.172 0.986 0.699 0.232 0.411 0.079 0.480 2424 chr8 128037636 128564211 + 0 NA TTS (NR_117100) TTS (NR_117100) 44041 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLo-2|LINC01244 cancer susceptibility candidate 21 (non-protein coding) ncRNA nan nan nan 0.251 0.859 0.453 0.080 0.216 0.098 0.062 0.076 0.092 nan 0.564 0.103 0.655 0.568 0.699 0.960 0.455 0.550 0.663 0.251 nan nan 8.325 11.981 0.903 0.877 16.781 9.739 0.194 0.298 0.161 0.170 10.860 20.399 0.480 0.450 0.069 0.184 0.071 0.068 0.080 0.092 0.508 0.088 0.097 10.096 1794 chr3 119050130 119065687 + 0 NA intron (NM_020754, intron 1 of 11) intron (NM_020754, intron 1 of 11) -16301 NR_046748 100874246 Hs.607097 NR_046748 ENSG00000241155 ARHGAP31-AS1 - ARHGAP31 antisense RNA 1 ncRNA 0.855 nan 0.642 0.169 0.370 0.228 0.154 0.356 0.113 0.132 0.079 0.082 0.243 0.035 0.081 0.388 0.310 0.230 0.291 0.317 nan 0.189 0.120 0.331 0.268 nan 1.376 0.190 0.219 0.514 0.280 0.106 0.144 0.032 0.064 0.281 0.491 2.675 1.288 0.032 0.085 0.082 0.154 0.082 0.024 0.019 0.006 0.104 1037 chr17 27366732 27401874 + 0 NA TTS (NM_016518) TTS (NM_016518) 14385 NM_016518 51268 Hs.462585 NM_016518 ENSG00000179761 PIPOX LPIPOX pipecolic acid and sarcosine oxidase protein-coding nan nan nan 0.318 1.111 0.602 1.592 0.141 0.087 0.285 0.229 0.422 1.725 0.124 0.145 1.783 2.647 0.580 0.674 0.615 0.804 2.373 0.983 0.383 0.473 0.637 0.968 1.088 1.473 4.713 3.899 0.996 1.679 1.279 1.439 1.770 nan 1.377 0.814 0.803 0.631 0.598 0.180 1.592 0.422 0.355 0.428 0.859 3.227 941 chr16 18934881 18940352 + 0 NA 5' UTR (NM_015092, exon 1 of 63) 5' UTR (NM_015092, exon 1 of 63) 110 NM_015092 23049 Hs.460179 NM_015092 ENSG00000157106 SMG1 61E3.4|ATX|LIP SMG1, nonsense mediated mRNA decay associated PI3K related kinase protein-coding 3.457 2.261 nan 5.153 3.627 1.732 2.421 2.453 0.235 1.318 0.799 2.766 8.097 2.742 0.098 3.176 3.205 2.566 3.492 3.376 3.174 9.352 3.087 10.136 10.786 1.875 2.726 10.514 17.689 nan 4.556 1.663 3.842 4.726 5.546 3.832 5.184 2.614 1.269 2.072 2.869 1.370 1.768 2.421 2.766 1.034 1.155 1.761 2.204 1156 chr18 19758628 19774735 + 0 NA intron (NM_005257, intron 6 of 6) intron (NM_005257, intron 6 of 6) 17283 NM_005257 2627 Hs.514746 NM_005257 ENSG00000141448 GATA6 - GATA binding protein 6 protein-coding 0.699 0.869 1.449 0.376 0.450 0.209 0.160 0.117 0.040 0.552 0.212 0.052 0.329 0.051 0.079 0.330 0.236 1.218 2.068 0.368 0.472 4.500 1.836 0.257 0.299 0.130 0.122 0.112 0.118 0.481 0.265 0.236 0.431 0.291 0.233 0.300 0.645 0.437 0.555 0.017 0.121 0.022 0.024 0.160 0.052 0.024 0.025 0.092 0.163 732 chr13 99047256 99073345 + 0 NA intron (NM_005766, intron 13 of 26) intron (NM_005766, intron 13 of 26) 114079 NM_003576 8428 Hs.508514 NM_003576 ENSG00000102572 STK24 HEL-S-95|MST3|MST3B|STE20|STK3 serine/threonine kinase 24 protein-coding 0.889 2.571 1.211 0.609 0.444 0.228 0.967 0.076 0.076 0.366 0.228 1.045 1.259 0.072 0.062 0.568 0.539 0.286 0.453 1.145 1.240 1.796 0.571 0.141 0.167 0.237 nan 2.687 2.541 0.303 0.191 0.370 0.510 0.739 0.737 0.368 nan 0.603 0.235 4.953 2.910 0.171 0.252 0.967 1.045 0.049 0.566 0.099 0.114 1643 chr20 57635563 57642225 + 0 NA Intergenic Intergenic -20993 NR_037930 100533975 Hs.656865 NR_037929 SLMO2-ATP5E - SLMO2-ATP5E readthrough ncRNA 1.269 1.388 0.800 0.145 0.565 0.123 0.331 0.121 0.141 0.332 0.294 0.215 0.654 3.977 0.195 0.576 nan 0.126 0.129 0.471 0.557 6.404 1.296 0.197 0.132 0.772 1.115 0.134 0.202 2.430 2.327 0.203 0.199 6.008 7.967 0.364 0.626 3.568 1.325 0.110 0.176 1.879 0.024 0.331 0.215 0.250 4.005 0.050 0.036 361 chr10 63591947 63603869 + 0 NA Intergenic Intergenic -63105 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 0.670 nan 1.308 0.089 0.352 0.147 0.043 2.576 0.121 0.074 0.096 0.622 0.360 4.580 0.138 0.456 0.284 6.688 10.744 0.469 0.529 0.339 0.117 0.831 0.847 0.560 0.747 0.566 0.455 0.308 0.161 0.159 0.189 0.575 0.760 0.294 nan 0.791 0.508 0.019 0.044 0.119 0.040 0.043 0.622 0.033 0.068 0.034 0.083 1677 chr21 36232564 36265482 + 0 NA intron (NM_001001890, intron 2 of 5) intron (NM_001001890, intron 2 of 5) 11964 NM_001122607 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha runt related transcription factor 1 protein-coding 1.464 0.891 1.765 0.609 0.945 0.492 1.201 1.126 0.171 0.186 0.136 1.723 2.741 0.132 0.077 1.261 1.497 3.691 6.769 4.829 4.035 1.165 0.401 4.191 4.222 0.141 0.275 1.787 2.588 0.799 0.762 1.211 1.407 0.307 0.292 0.261 0.288 nan 0.503 2.241 2.740 0.020 0.248 1.201 1.723 0.222 0.416 0.329 0.072 57 chr1 23914793 23928303 + 0 NA Intergenic Intergenic -32276 NR_027042 259283 Hs.523369 NM_001348075 ENSG00000197880 MDS2 - myelodysplastic syndrome 2 translocation associated protein-coding 2.573 3.066 nan 1.602 1.330 0.602 1.165 0.372 0.111 0.728 0.373 0.542 6.176 0.313 0.098 0.434 0.568 0.581 1.356 1.509 1.188 2.251 0.467 0.718 0.686 2.905 3.944 3.515 3.762 5.235 4.810 0.307 0.433 1.862 2.159 1.990 5.466 2.514 1.224 1.741 0.994 0.885 1.198 1.165 0.542 1.276 1.803 0.111 2.077 1355 chr19 48891695 48905844 + 0 NA intron (NM_000836, intron 1 of 12) intron (NM_000836, intron 1 of 12) 637 NM_000836 2906 Hs.445015 NM_000836 ENSG00000105464 GRIN2D EB11|EIEE46|GluN2D|NMDAR2D|NR2D glutamate ionotropic receptor NMDA type subunit 2D protein-coding 2.487 1.455 2.004 1.170 2.975 1.872 1.949 0.645 0.212 0.539 0.260 1.576 2.828 2.773 0.108 1.458 2.177 1.824 2.836 3.175 3.109 9.159 3.609 4.818 5.391 2.822 3.794 2.819 3.983 3.759 2.741 1.704 2.084 1.699 1.986 2.581 4.461 2.440 1.354 0.912 3.002 0.626 0.636 1.949 1.576 1.234 1.340 0.641 1.177 1533 chr2 213244608 213261706 + 0 NA intron (NM_005235, intron 1 of 27) intron (NM_005235, intron 1 of 27) 37927 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA nan 0.926 nan 0.133 0.263 0.160 0.097 0.106 0.066 0.165 0.166 0.056 0.391 0.038 0.021 0.505 0.397 0.840 1.001 0.214 0.266 0.603 0.295 0.258 0.317 3.011 3.608 0.290 nan 0.346 0.126 0.138 0.235 0.760 1.057 0.316 0.509 0.279 0.260 0.046 0.067 0.157 0.070 0.097 0.056 0.028 0.024 0.064 0.130 989 chr16 84763198 84769190 + 0 NA intron (NM_001272075, intron 2 of 14) AluSz|SINE|Alu 32639 NR_073578 9100 Hs.136778 NM_005153 ENSG00000103194 USP10 UBPO ubiquitin specific peptidase 10 protein-coding nan 1.428 1.014 1.337 0.684 0.367 0.383 1.483 0.160 0.491 0.313 1.224 1.283 0.866 0.058 0.708 0.782 0.965 2.264 0.596 0.577 1.064 0.327 1.135 1.126 2.326 2.476 5.753 8.621 0.960 0.750 0.422 0.585 0.497 2.009 0.540 1.376 1.705 0.943 0.675 0.370 0.078 0.147 0.383 1.224 0.307 4.857 0.202 0.123 368 chr10 103235727 103256033 + 0 NA intron (NM_033637, intron 4 of 14) intron (NM_033637, intron 4 of 14) 102147 NM_001174084 27343 Hs.523230 NM_013274 ENSG00000166169 POLL BETAN|POLKAPPA DNA polymerase lambda protein-coding nan nan 1.400 0.225 0.541 0.284 1.176 0.155 0.110 0.463 0.388 0.391 0.530 0.054 0.095 0.437 0.407 0.631 0.809 0.874 1.201 1.549 0.425 0.218 0.135 3.912 nan 0.897 1.070 0.459 0.384 0.262 0.363 2.533 3.183 2.133 nan 1.320 0.595 0.139 0.618 0.756 0.258 1.176 0.391 0.081 0.065 0.174 1.823 280 chr1 205609163 205620258 + 0 NA Intergenic L2b|LINE|L2 -12710 NM_021795 2005 Hs.497520 NM_001973 ENSG00000158711 ELK4 SAP1 ELK4, ETS transcription factor protein-coding 1.712 1.495 1.122 0.204 0.850 0.360 0.668 0.285 0.158 0.254 0.326 0.977 0.396 0.058 0.108 0.483 0.450 0.544 0.713 1.957 1.980 0.585 0.305 nan nan 1.034 1.210 1.009 1.261 1.035 0.872 0.352 0.339 0.353 0.275 0.519 1.282 1.249 0.810 2.014 4.830 0.130 0.335 0.668 0.977 0.745 0.073 0.580 0.156 1791 chr3 114798441 114821467 + 0 NA intron (NM_015642, intron 1 of 9) intron (NM_015642, intron 1 of 9) -9316 NR_046877 100874131 NR_046877 ENSG00000242767 ZBTB20-AS4 - ZBTB20 antisense RNA 4 ncRNA 1.325 nan 1.287 0.318 1.945 1.086 0.353 0.580 0.151 0.857 0.618 1.339 0.419 0.160 0.102 0.583 0.788 1.456 2.169 1.316 nan 4.014 1.487 0.405 0.394 nan 7.302 0.628 0.760 1.337 0.647 0.392 0.482 1.104 1.134 0.577 1.224 1.445 0.846 0.824 0.111 0.190 0.031 0.353 1.339 0.053 0.374 0.193 0.445 2228 chr7 11335572 11384082 + 0 NA Intergenic LTR33|LTR|ERVL 346328 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding nan 1.055 nan 0.174 0.252 0.148 0.211 0.142 0.077 0.026 0.032 0.232 0.470 0.050 0.150 nan 0.280 0.594 0.456 0.472 0.557 0.251 0.104 14.739 16.024 0.951 1.352 0.372 0.352 0.333 0.169 0.144 0.266 0.271 0.358 0.341 0.604 0.588 0.508 0.078 0.109 0.072 0.070 0.211 0.232 0.108 0.104 0.055 0.117 1280 chr19 19169034 19176501 + 0 NA Intergenic MIR|SINE|MIR -2003 NM_001321544 284439 Hs.303669 NM_178526 ENSG00000181035 SLC25A42 - solute carrier family 25 member 42 protein-coding 1.768 1.095 1.593 4.912 0.992 0.473 0.551 0.421 0.144 0.421 0.222 1.201 2.132 0.463 0.072 0.857 1.391 0.951 1.237 1.929 1.948 1.776 0.524 0.819 0.869 1.106 1.473 8.773 14.570 2.612 2.887 0.535 0.702 0.577 0.607 1.561 3.132 5.471 2.268 0.933 1.501 0.090 0.276 0.551 1.201 0.196 3.948 0.145 0.795 1119 chr17 75032272 75051536 + 0 NA Intergenic MER66C|LTR|ERV1 -42821 NR_027058 654434 Hs.720923 NR_027058 ENSG00000234912 SNHG20 C17orf86|LINC00338|NCRNA00338|SCARNA16HG small nucleolar RNA host gene 20 ncRNA 1.148 1.123 1.529 0.213 1.527 0.886 1.050 0.140 0.101 0.771 0.518 1.056 1.060 0.066 0.104 2.469 2.366 0.391 0.475 1.887 1.621 2.320 0.688 0.616 0.670 nan 0.925 1.345 1.938 1.465 1.186 0.702 0.848 0.720 0.654 0.417 0.652 nan 1.403 1.232 0.621 0.157 0.160 1.050 1.056 0.264 0.301 0.343 0.177 972 chr16 51456004 51500636 + 0 NA Intergenic Intergenic -293137 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding nan nan nan 0.190 0.262 0.144 0.656 0.065 0.065 0.098 0.095 0.123 0.251 0.029 0.076 0.336 0.223 0.166 0.238 0.255 0.289 0.080 0.049 0.342 0.377 0.103 nan nan nan nan 0.150 0.135 0.169 0.038 0.059 1.089 nan nan 0.544 0.026 0.056 0.013 0.211 0.656 0.123 0.024 0.043 0.073 0.816 33 chr1 9959571 9973455 + 0 NA intron (NM_020248, intron 1 of 5) AluSq2|SINE|Alu 3803 NM_020248 56998 Hs.463759 NM_020248 ENSG00000178585 CTNNBIP1 ICAT catenin beta interacting protein 1 protein-coding 1.869 nan 2.869 3.983 0.986 0.498 0.729 0.593 0.205 0.292 0.292 0.671 3.179 0.843 0.125 1.293 1.498 1.569 1.818 2.486 2.426 0.628 0.205 1.433 1.495 1.738 nan nan 7.243 nan 0.803 0.559 0.787 0.508 0.486 1.082 1.851 1.408 0.807 0.598 0.914 0.082 0.216 0.729 0.671 0.293 0.489 0.229 0.325 908 chr15 102514046 102519952 + 0 NA TTS (NR_003659) TTS (NR_003659) 2297 NR_051985 100288486 Hs.644359 NR_034090 ENSG00000248472 DDX11L9 - DEAD/H-box helicase 11 like 9 pseudo 1.930 nan 1.727 0.506 0.550 0.300 5.405 0.297 0.081 1.575 0.906 0.912 nan 0.308 0.136 0.609 0.869 0.525 0.826 5.664 5.198 1.334 0.538 0.726 0.961 1.694 2.308 1.071 0.955 1.342 0.994 0.410 0.429 2.038 1.570 0.527 0.799 4.458 1.996 10.044 4.852 1.677 0.285 5.405 0.912 1.075 1.333 0.048 0.420 876 chr15 63755848 63809301 + 0 NA Intergenic MSTC|LTR|ERVL-MaLR -14136 NR_046342 9960 Hs.458499 NM_006537 ENSG00000140455 USP3 SIH003|UBP ubiquitin specific peptidase 3 protein-coding 1.467 1.537 nan 0.741 0.609 0.342 0.315 0.824 0.166 0.791 0.500 0.852 1.482 0.385 0.100 1.649 2.174 1.192 2.018 0.927 0.927 nan 0.663 0.889 0.900 1.276 1.717 2.137 2.892 2.411 2.027 0.697 0.978 2.518 2.809 1.644 3.562 1.220 0.693 0.155 0.443 0.848 0.178 0.315 0.852 0.220 0.586 0.254 0.890 258 chr1 183984672 184009704 + 0 NA intron (NM_001303421, intron 1 of 11) intron (NM_001303421, intron 1 of 11) 9716 NM_001303421 23127 Hs.387995 NM_015101 ENSG00000198756 COLGALT2 C1orf17|GLT25D2 collagen beta(1-O)galactosyltransferase 2 protein-coding nan nan 1.795 0.190 0.254 0.128 0.819 0.782 0.232 0.172 0.228 0.082 0.617 1.322 0.136 1.270 1.434 0.614 1.016 0.680 nan 0.282 0.115 nan 0.495 6.440 7.929 0.418 0.378 1.281 1.181 0.736 1.259 2.164 1.509 0.668 nan 0.599 0.598 0.060 0.153 0.533 0.204 0.819 0.082 0.121 0.033 0.432 0.188 729 chr13 95358389 95366551 + 0 NA 3' UTR (NM_007084, exon 1 of 1) 3' UTR (NM_007084, exon 1 of 1) -1730 NR_120417 101927248 Hs.626095 NR_120417 LOC101927248 - uncharacterized LOC101927248 ncRNA 0.854 4.189 1.960 5.154 1.754 0.770 2.793 0.139 0.040 0.362 0.324 2.530 17.728 1.082 0.110 0.321 0.191 0.221 0.320 5.573 3.349 1.898 1.092 0.102 0.115 0.069 0.122 0.473 1.661 0.537 0.421 0.313 0.267 0.509 0.488 0.379 0.764 1.020 0.565 0.047 0.554 0.012 0.504 2.793 2.530 0.071 0.424 0.061 0.062 1218 chr18 59992537 60000448 + 0 NA intron (NM_003839, intron 1 of 9) intron (NM_003839, intron 1 of 9) 3972 NM_001270950 8792 Hs.204044 NM_003839 ENSG00000141655 TNFRSF11A CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCER TNF receptor superfamily member 11a protein-coding nan 1.094 1.082 1.553 0.728 0.547 0.776 0.153 0.060 1.069 0.358 0.781 1.769 0.181 0.086 0.777 0.685 1.044 1.787 2.617 2.373 7.707 1.821 2.210 2.205 1.163 1.506 1.542 2.169 0.931 1.300 0.351 0.548 1.937 2.090 0.437 0.805 nan 3.662 0.171 0.596 0.383 0.221 0.776 0.781 0.283 0.320 0.012 0.248 1340 chr19 47103228 47108195 + 0 NA intron (NM_001329922, intron 1 of 5) intron (NM_001329922, intron 1 of 5) 382 NM_001329922 808 Hs.515487 NM_005184 ENSG00000160014 CALM3 CaM|CaMIII|HEL-S-72|PHKD|PHKD3 calmodulin 3 protein-coding 5.229 3.722 4.205 4.060 6.184 2.942 4.778 2.355 0.194 1.418 0.972 5.542 8.180 5.128 0.128 7.197 7.968 6.745 8.767 10.342 10.675 9.481 6.671 15.500 16.210 5.023 6.179 7.359 10.553 6.977 8.372 7.554 11.396 5.930 5.316 7.270 6.670 4.113 2.520 3.481 6.628 1.610 1.854 4.778 5.542 1.050 2.738 3.314 2.322 2013 chr5 121746357 121772224 + 0 NA non-coding (NR_131761, exon 4 of 13) non-coding (NR_131761, exon 4 of 13) 32506 NM_001308105 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding nan 0.875 1.627 0.164 0.490 0.265 0.134 0.079 0.100 0.104 0.102 0.256 1.422 0.054 0.116 0.443 0.341 0.443 nan 0.502 0.631 0.556 0.173 0.277 0.259 4.046 4.669 0.410 0.362 0.552 0.175 0.129 0.168 2.888 3.132 0.196 0.381 0.724 0.403 0.300 0.347 0.885 0.100 0.134 0.256 0.007 0.162 0.046 0.062 1795 chr3 121280263 121294557 + 0 NA intron (NM_001012659, intron 1 of 4) intron (NM_001012659, intron 1 of 4) 632 NM_001012659 503582 Hs.224976 NM_001012659 ENSG00000186103 ARGFX - arginine-fifty homeobox protein-coding 1.491 nan 1.041 0.203 0.499 0.224 0.100 0.173 0.180 0.160 0.235 0.140 0.205 0.045 0.106 0.393 0.188 0.243 0.337 0.373 0.373 1.148 0.266 0.320 0.322 2.245 nan 0.329 0.433 2.571 1.855 0.233 0.309 0.073 0.128 1.922 6.185 0.623 0.493 0.035 0.137 0.047 0.177 0.100 0.140 0.055 0.029 0.070 3.497 660 chr12 107519235 107528003 + 0 NA Intergenic Intergenic -35984 NM_004075 1407 Hs.151573 NM_004075 ENSG00000008405 CRY1 PHLL1 cryptochrome circadian clock 1 protein-coding 1.200 1.346 nan 0.341 4.076 1.882 2.272 0.166 0.276 2.456 1.385 5.754 6.888 0.037 0.164 0.385 0.399 0.306 0.329 7.329 8.446 1.993 0.704 0.476 0.487 0.389 0.769 1.062 2.503 1.623 1.552 0.192 0.180 2.127 1.885 0.451 1.194 2.516 1.556 4.271 3.993 0.471 0.027 2.272 5.754 0.298 0.174 0.046 0.197