PeakID (cmd=annotatePeaks.pl merged_SE_SSE2_SM9.GO0043565.bed hg19 -size given -wig ./20171108_112-H3_p5_swig_treat_afterfiting_all.scaled.wig ./20171108_190-H3_p5_swig_treat_afterfiting_all.scaled.wig ./20171108_283-H3_p5_swig_treat_afterfiting_all.scaled.wig ./CORL88_7_21_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./H1436_H3K27ac_p5_swig_treat_afterfiting_all.scaled.wig ./H1436_ab4729_ChIP_p5_swig_treat_afterfiting_all.scaled.wig ./H1963_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./H196_ab4729_ChIP_p5_swig_treat_afterfiting_all.scaled.wig ./H196_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./H2081_ab4729_ChIP_p5_swig_treat_afterfiting_all.scaled.wig ./H2081_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./H209_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./H345_H3K27ac_p5_swig_treat_afterfiting_all.scaled.wig ./H841_ab4729_ChIP_p5_swig_treat_afterfiting_all.scaled.wig ./H841_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_COR-L311_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_COR-L311_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H1048-cas9_sgNeg_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H1048-cas9_sgPOU2F3_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H128_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H128_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H146_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H146_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H211_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H211_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H446_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H446_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H510A_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H510A_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H524_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H524_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H526_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H526_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H69_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H69_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H82_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H82_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H889_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./Vakoc_H889_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig ./dms79_ab4729_chip_0825_0828_15c_S13_p5_swig_treat_afterfiting_all.scaled.wig ./h187_ab4729_chip_0825_0828_15c_S15_p5_swig_treat_afterfiting_all.scaled.wig ./h69_ab4729_chip_0610_0714_15c_S27_p5_swig_treat_afterfiting_all.scaled.wig ./hcc33_ab4729_chip_0825_0828_17c_S17_p5_swig_treat_afterfiting_all.scaled.wig ./st_hw_h1963_k27ac_p5_swig_treat_afterfiting_all.scaled.wig ./st_hw_h209_k27ac_p5_swig_treat_afterfiting_all.scaled.wig ./st_hw_h2171_k27ac_p5_swig_treat_afterfiting_all.scaled.wig ./st_hw_shp77_k27ac_p5_swig_treat_afterfiting_all.scaled.wig ./ts_hw_h526_ab4729_chip_0505_12c_S19_hg19_p5_swig_treat_afterfiting_all.scaled.wig ./ts_hw_h82_ab4729_chip_0331_12c_S3_hg19_p5_swig_treat_afterfiting_all.scaled.wig) Chr Start End Strand Peak Score Focus Ratio/Region Size Annotation Detailed Annotation Distance to TSS Nearest PromoterID Entrez ID Nearest Unigene Nearest Refseq Nearest Ensembl Gene Name Gene Alias Gene Description Gene Type ./20171108_112-H3_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./20171108_190-H3_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./20171108_283-H3_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./CORL88_7_21_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H1436_H3K27ac_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H1436_ab4729_ChIP_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H1963_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H196_ab4729_ChIP_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H196_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H2081_ab4729_ChIP_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H2081_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H209_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H345_H3K27ac_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H841_ab4729_ChIP_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./H841_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_COR-L311_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_COR-L311_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H1048-cas9_sgNeg_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H1048-cas9_sgPOU2F3_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H128_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H128_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H146_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H146_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H211_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H211_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H446_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H446_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H510A_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H510A_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H524_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H524_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H526_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H526_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H69_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H69_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H82_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H82_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H889_1_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./Vakoc_H889_2_ab4729_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./dms79_ab4729_chip_0825_0828_15c_S13_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./h187_ab4729_chip_0825_0828_15c_S15_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./h69_ab4729_chip_0610_0714_15c_S27_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./hcc33_ab4729_chip_0825_0828_17c_S17_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./st_hw_h1963_k27ac_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./st_hw_h209_k27ac_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./st_hw_h2171_k27ac_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./st_hw_shp77_k27ac_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./ts_hw_h526_ab4729_chip_0505_12c_S19_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp ./ts_hw_h82_ab4729_chip_0331_12c_S3_hg19_p5_swig_treat_afterfiting_all.scaled.wig wig avg over given bp 791 chr17 43970903 43986777 + 0 NA intron (NM_001123066, intron 1 of 14) intron (NM_001123066, intron 1 of 14) 5691 NR_024560 100130148 Hs.669307 NR_024560 ENSG00000279685 MAPT-IT1 - MAPT intronic transcript 1 ncRNA 1.939 1.611 nan 3.037 7.885 4.214 1.913 0.168 0.050 2.912 1.198 2.073 2.156 0.808 0.113 1.573 1.620 0.285 0.401 7.360 nan 4.775 1.423 0.991 1.066 2.488 3.155 1.596 nan 4.672 3.999 1.180 1.798 4.301 3.452 0.737 1.453 3.717 1.845 2.383 0.510 1.069 2.613 1.913 2.073 1.318 1.128 0.514 0.131 1708 chr9 2228243 2244466 + 0 NA Intergenic Intergenic 77898 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 1.137 2.227 1.693 1.048 1.254 0.675 0.979 0.325 0.150 1.371 0.661 1.877 4.950 0.081 0.069 0.406 0.348 0.701 1.190 3.334 3.154 3.977 2.156 0.550 0.699 1.677 2.255 2.201 3.194 1.611 2.012 0.724 1.123 1.462 0.996 0.864 nan 2.600 1.682 1.890 3.316 0.195 0.250 0.979 1.877 0.898 0.598 0.583 0.139 1730 chr9 35903509 35914640 + 0 NA promoter-TSS (NR_024283) promoter-TSS (NR_024283) -406 NR_024283 158376 Hs.302677 NR_024283 ENSG00000235387 LINC00961 SPAR long intergenic non-protein coding RNA 961 ncRNA 1.682 nan 1.326 0.261 0.297 0.185 0.679 1.940 0.304 0.350 0.200 0.175 2.577 0.204 0.086 0.258 0.209 0.949 1.552 0.884 0.877 0.825 0.258 0.290 0.269 5.124 6.328 1.018 0.895 1.730 1.616 0.360 0.430 0.114 0.122 0.916 2.540 3.206 2.149 2.254 0.241 0.009 0.043 0.679 0.175 0.123 0.728 0.053 0.765 742 chr17 7779526 7798290 + 0 NA promoter-TSS (NM_001330111) promoter-TSS (NM_001330111) -202 NM_001330111 84316 Hs.565094 NM_032356 ENSG00000183011 NAA38 LSMD1|PFAAP2 N(alpha)-acetyltransferase 38, NatC auxiliary subunit protein-coding 3.121 1.704 3.326 2.109 4.170 2.109 3.162 1.543 0.239 1.993 1.030 5.866 6.728 1.819 0.099 5.069 6.777 2.919 4.698 9.188 8.564 2.890 1.046 2.676 2.663 2.091 2.936 6.947 6.639 3.102 2.883 1.825 3.608 2.179 2.002 3.082 5.696 2.033 0.889 4.944 3.226 1.039 1.247 3.162 5.866 1.630 3.946 2.901 2.275 473 chr12 54068548 54073564 + 0 NA promoter-TSS (NM_005176) promoter-TSS (NM_005176) -544 NM_001002031 517 Hs.524464 NM_005176 ENSG00000135390 ATP5G2 ATP5A ATP synthase, H+ transporting, mitochondrial Fo complex subunit C2 (subunit 9) protein-coding nan 2.044 2.121 1.928 8.092 4.735 1.891 0.930 0.162 1.027 0.775 4.131 5.592 1.276 0.146 nan 3.405 3.524 4.892 6.702 nan 10.739 4.587 7.514 8.542 4.378 nan 5.497 nan 10.841 10.430 2.903 3.800 5.024 5.124 7.783 10.718 3.410 1.844 0.692 5.085 0.839 0.743 1.891 4.131 2.181 5.832 1.096 5.361 359 chr11 65055098 65081514 + 0 NA Intergenic AluSx1|SINE|Alu -13983 NM_006779 10435 Hs.343380 NM_006779 ENSG00000149798 CDC42EP2 BORG1|CEP2 CDC42 effector protein 2 protein-coding nan 0.771 3.184 0.233 0.310 0.133 0.441 0.733 0.195 0.101 0.119 0.122 0.525 0.174 0.119 0.578 0.665 0.352 0.660 0.858 0.934 0.609 0.253 0.489 0.521 0.567 0.909 0.441 0.518 1.224 0.984 0.320 0.426 0.791 0.792 0.619 1.799 0.410 0.312 0.274 0.155 0.374 0.481 0.441 0.122 0.413 0.050 0.052 0.591 823 chr17 75131475 75167197 + 0 NA intron (NM_001039573, intron 3 of 17) AluSz|SINE|Alu 12331 NM_001039573 6397 Hs.464184 NM_003003 ENSG00000129657 SEC14L1 PRELID4A|SEC14L SEC14 like lipid binding 1 protein-coding 1.543 2.297 1.699 1.621 1.089 0.645 0.768 1.673 0.280 2.819 1.553 2.246 2.235 0.549 0.166 4.259 3.475 2.158 1.604 1.663 1.703 4.494 1.775 14.731 14.934 nan 1.472 2.005 3.160 1.345 0.965 1.568 2.133 2.936 3.795 0.710 1.209 nan 0.993 0.283 1.228 1.142 0.475 0.768 2.246 0.223 0.920 1.829 0.215 518 chr12 125115897 125182348 + 0 NA Intergenic L1ME3|LINE|L1 -97112 NM_001206654 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 1.531 1.294 2.016 0.159 0.465 0.214 0.466 0.469 0.192 0.175 0.146 0.481 0.977 0.248 0.108 0.518 0.883 0.332 0.905 0.813 0.864 nan 0.307 0.278 0.330 2.276 2.749 0.952 1.204 3.361 3.236 0.361 0.344 0.352 0.517 1.331 3.795 1.192 0.849 0.620 0.394 0.092 0.117 0.466 0.481 0.712 0.570 0.094 1.232 601 chr14 64966451 64978157 + 0 NA promoter-TSS (NM_001304507) promoter-TSS (NM_001304507) -373 NM_001304508 7597 Hs.654571 NM_006977 ENSG00000089775 ZBTB25 C14orf51|KUP|ZNF46 zinc finger and BTB domain containing 25 protein-coding 6.239 nan 4.848 4.729 4.646 2.310 3.970 4.154 0.518 1.846 0.995 4.211 7.317 3.950 0.169 3.144 3.831 4.991 7.416 8.134 7.004 3.912 1.724 nan 7.254 3.635 4.160 5.099 nan 5.404 7.042 1.754 4.002 6.240 6.341 3.112 3.504 3.536 1.885 6.863 5.927 1.704 3.602 3.970 4.211 0.956 2.148 1.531 1.917 59 chr1 38267359 38278644 + 0 NA promoter-TSS (NM_001142726) promoter-TSS (NM_001142726) -472 NM_198446 127687 Hs.532749 NM_198446 ENSG00000197982 C1orf122 ALAESM chromosome 1 open reading frame 122 protein-coding 2.455 nan 2.367 4.156 1.317 0.686 1.402 1.090 0.155 1.196 0.601 2.717 3.337 1.949 0.205 1.324 1.615 1.263 2.165 2.759 2.678 nan 0.640 2.112 2.163 1.658 2.485 10.664 10.175 nan 2.070 1.883 3.570 0.639 0.624 1.495 2.066 1.417 nan 0.990 1.081 0.143 0.683 1.402 2.717 0.431 1.035 1.018 0.692 1205 chr21 40053629 40074184 + 0 NA Intergenic Intergenic -30202 NM_004449 2078 Hs.473819 NM_004449 ENSG00000157554 ERG erg-3|p55 ERG, ETS transcription factor protein-coding nan 0.553 0.912 1.163 0.363 0.258 0.138 0.065 0.135 0.435 0.254 1.774 0.523 0.032 0.093 0.348 0.205 0.151 0.245 0.930 1.482 nan 1.088 0.138 0.100 0.126 nan 1.402 1.911 0.444 0.160 0.167 0.172 0.348 0.502 0.139 0.184 3.531 1.800 0.022 0.108 0.070 0.027 0.138 1.774 0.090 0.663 0.038 0.072 1686 chr8 141466130 141478177 + 0 NA Intergenic Intergenic -3475 NM_031466 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 4.292 3.014 nan 4.212 5.245 2.731 1.996 1.012 0.281 1.190 0.373 4.640 8.058 1.135 0.094 2.907 3.186 2.233 3.689 nan 7.770 nan 3.794 6.434 6.876 2.128 2.811 4.858 6.896 4.051 4.037 1.856 2.841 4.404 4.628 2.054 2.606 3.454 1.695 4.353 4.164 0.725 1.030 1.996 4.640 1.224 3.483 1.035 0.719 1378 chr5 33439250 33443892 + 0 NA intron (NR_047678, intron 1 of 17) MIR3|SINE|MIR 689 NM_152295 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 4.206 3.509 9.056 11.903 3.323 1.764 3.289 7.581 0.450 5.172 2.243 5.631 11.641 5.290 0.204 5.542 6.441 7.747 10.123 7.335 6.366 8.197 2.984 16.311 17.511 7.397 9.780 9.241 13.051 12.203 13.390 4.735 9.620 7.885 7.431 3.938 5.772 5.058 2.750 2.610 3.955 1.249 2.558 3.289 5.631 1.566 3.715 2.991 1.890 378 chr11 74985846 74992149 + 0 NA intron (NM_020251, intron 8 of 14) Plat_L3|LINE|CR1 37047 NM_001195528 100507050 Hs.577323 NM_001195528 ENSG00000261594 TPBGL - trophoblast glycoprotein-like protein-coding nan 2.657 0.908 2.794 1.035 0.434 0.528 0.107 0.037 0.274 0.102 5.237 2.539 0.121 0.108 0.780 0.871 0.230 0.455 8.299 9.205 2.888 0.723 0.983 1.108 0.527 1.037 9.012 7.999 2.752 2.703 0.454 0.756 0.930 0.506 0.559 1.571 1.558 1.173 8.830 4.956 0.198 0.612 0.528 5.237 1.045 0.129 0.134 0.969 1430 chr5 145704900 145726003 + 0 NA Intergenic Intergenic -3136 NM_002700 5459 Hs.553499 NM_002700 ENSG00000091010 POU4F3 BRN3C|DFNA15|DFNA42|DFNA52 POU class 4 homeobox 3 protein-coding nan 0.731 0.459 0.116 0.267 0.152 0.116 0.074 0.145 0.089 0.078 0.103 0.810 0.052 0.097 0.186 0.137 0.117 0.112 0.407 0.414 0.334 0.078 0.064 0.070 0.185 0.317 0.219 0.304 0.416 0.262 0.177 0.220 1.160 0.547 0.118 0.190 0.718 0.525 0.039 0.047 0.082 6.483 0.116 0.103 0.069 0.044 0.056 0.053 727 chr17 1943346 1946357 + 0 NA promoter-TSS (NM_080822) promoter-TSS (NM_080822) -426 NM_080822 124641 Hs.513856 NM_080822 ENSG00000262664 OVCA2 - ovarian tumor suppressor candidate 2 protein-coding 6.637 2.495 3.590 1.690 3.534 2.399 3.293 1.263 0.004 0.782 0.413 3.504 6.774 5.956 0.181 4.612 7.774 4.815 6.352 6.901 6.925 6.017 3.098 4.099 4.087 3.436 5.344 4.615 7.047 10.256 12.777 1.268 2.511 2.722 2.461 14.269 17.508 2.275 1.190 3.233 2.169 0.662 1.150 3.293 3.504 1.970 5.601 0.483 10.432 842 chr18 901429 912097 + 0 NA intron (NM_001099733, intron 2 of 4) CpG 1566 NM_001117 116 Hs.531719 NM_001117 ENSG00000141433 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 protein-coding 3.912 1.734 1.001 7.570 0.687 0.330 0.477 0.096 0.046 1.438 0.622 1.102 20.744 0.133 0.129 0.239 0.126 0.079 0.067 3.942 3.246 nan 2.102 0.248 0.232 1.946 nan 4.425 4.000 nan 0.752 0.082 0.104 2.168 1.954 0.157 nan nan 3.094 9.888 1.963 0.411 0.650 0.477 1.102 0.172 4.997 0.059 1103 chr2 208254232 208278459 + 0 NA Intergenic Intergenic -128271 NM_004379 1385 Hs.516646 NM_004379 ENSG00000118260 CREB1 CREB|CREB-1 cAMP responsive element binding protein 1 protein-coding 1.048 nan 1.159 1.746 2.450 1.294 0.846 0.349 0.098 0.674 0.504 2.111 5.094 0.049 0.081 0.373 0.501 1.225 1.497 0.713 0.830 0.303 0.079 0.424 0.421 4.319 4.326 0.689 0.802 0.793 0.402 0.242 0.414 1.895 2.157 1.185 2.314 0.762 0.397 2.445 0.456 0.678 0.101 0.846 2.111 0.073 0.893 0.135 0.282 418 chr11 128631779 128661172 + 0 NA intron (NM_001167681, intron 5 of 9) AluSx1|SINE|Alu 65954 NM_000220 3758 Hs.527830 NM_000220 ENSG00000151704 KCNJ1 KIR1.1|ROMK|ROMK1 potassium voltage-gated channel subfamily J member 1 protein-coding 0.574 0.834 0.713 1.156 5.625 2.849 0.517 0.107 0.054 0.973 0.597 2.882 1.025 0.081 0.082 1.896 2.813 0.753 0.655 4.313 4.048 3.391 1.056 0.138 0.150 0.174 0.269 3.556 2.543 0.416 0.348 0.699 0.986 0.548 0.359 0.094 nan 2.530 1.395 0.659 0.216 0.071 0.125 0.517 2.882 0.020 0.076 0.202 0.033 222 chr1 226611820 226626438 + 0 NA Intergenic AluJb|SINE|Alu -23328 NM_001618 142 Hs.177766 NM_001618 ENSG00000143799 PARP1 ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PPOL|pADPRT-1 poly(ADP-ribose) polymerase 1 protein-coding 1.435 nan 1.657 0.316 1.651 0.774 0.689 0.109 0.055 0.355 0.230 0.496 1.279 0.049 0.108 0.467 0.442 0.394 0.561 1.151 nan 1.906 0.431 0.415 0.487 0.460 0.830 0.906 0.956 1.040 0.947 0.136 0.155 1.183 0.916 0.433 0.611 1.243 0.751 1.656 0.367 0.485 4.993 0.689 0.496 0.172 0.093 0.020 0.184 1273 chr3 114606181 114623208 + 0 NA intron (NM_001164343, intron 3 of 11) MIRb|SINE|MIR 4775 NR_121662 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 1.385 nan 1.866 0.273 2.482 1.264 0.192 0.356 0.121 1.134 0.700 1.800 0.372 0.038 0.111 0.425 0.410 0.370 0.454 1.491 nan 4.835 2.486 1.124 1.056 nan 4.816 0.924 1.590 2.346 2.071 0.140 0.229 0.640 0.403 0.390 0.888 1.550 1.092 2.251 0.265 0.056 0.099 0.192 1.800 0.473 0.486 0.076 0.236 776 chr17 38218216 38233477 + 0 NA intron (NM_199334, intron 1 of 8) intron (NM_199334, intron 1 of 8) 6778 NM_001190918 7067 Hs.724 NM_003250 ENSG00000126351 THRA AR7|CHNG6|EAR7|ERB-T-1|ERBA|ERBA1|NR1A1|THRA1|THRA2|c-ERBA-1 thyroid hormone receptor, alpha protein-coding nan 3.184 1.372 1.402 3.163 1.598 4.170 2.686 0.366 1.943 1.148 2.849 3.989 1.379 0.089 3.048 5.039 1.116 1.444 nan 3.158 1.462 0.490 1.772 1.845 2.019 2.601 5.240 4.749 nan 2.667 1.383 2.574 1.622 1.334 1.353 2.690 2.023 1.095 4.056 2.309 0.560 0.255 4.170 2.849 1.468 1.401 2.010 1.294 1755 chr9 127622383 127633661 + 0 NA intron (NM_030978, intron 2 of 5) AluSx1|SINE|Alu 3625 NM_030978 81873 Hs.132499 NM_030978 ENSG00000136950 ARPC5L ARC16-2 actin related protein 2/3 complex subunit 5 like protein-coding nan nan 3.479 4.270 3.173 1.487 3.105 1.849 0.483 1.698 0.836 3.747 nan 2.993 0.215 2.786 2.674 4.866 7.531 5.473 5.005 4.078 1.833 9.079 9.005 2.076 nan 5.642 9.100 7.229 7.947 2.277 3.845 4.017 4.498 4.447 4.673 nan 1.438 3.045 1.799 0.573 0.956 3.105 3.747 0.932 3.161 0.613 1.566 934 chr19 17344286 17366849 + 0 NA intron (NM_005234, intron 1 of 3) CpG 584 NM_005234 2063 Hs.466148 NM_005234 ENSG00000160113 NR2F6 EAR-2|EAR2|ERBAL2 nuclear receptor subfamily 2 group F member 6 protein-coding 2.364 1.675 2.923 1.677 0.999 0.482 0.888 0.685 0.264 0.749 0.410 1.560 1.435 1.683 0.092 1.044 1.989 0.923 1.484 2.211 1.997 2.986 0.752 1.988 1.788 0.867 1.387 4.550 5.483 1.390 1.137 0.612 1.044 1.190 0.911 4.220 11.897 1.765 1.096 1.434 0.797 0.282 0.443 0.888 1.560 0.313 1.080 0.499 3.711 1145 chr20 22537862 22568146 + 0 NA intron (NR_001558, intron 1 of 3) intron (NR_001558, intron 1 of 3) 6276 NR_001558 140828 Hs.9842 NR_001558 ENSG00000259974 LINC00261 ALIEN|C20orf56|DEANR1|HCCDR1|NCRNA00261|onco-lncRNA-17 long intergenic non-protein coding RNA 261 ncRNA 0.799 1.138 nan 5.045 7.262 4.102 0.541 0.092 0.084 5.951 2.815 3.383 2.555 0.043 0.060 0.387 0.186 0.080 0.107 2.184 1.943 7.610 3.292 0.090 0.095 0.110 0.204 2.684 3.313 0.298 0.096 0.165 0.233 9.588 7.346 0.188 0.355 4.773 2.597 0.012 0.212 3.349 0.019 0.541 3.383 0.013 1.574 0.042 0.053 1558 chr7 19408165 19422927 + 0 NA Intergenic Intergenic -230502 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding nan 0.977 nan 0.191 0.182 0.044 0.223 0.289 0.131 0.826 0.655 0.073 0.669 0.103 0.150 nan 0.204 0.189 0.263 0.377 0.442 3.741 1.251 0.295 0.269 2.733 3.339 0.604 0.792 1.132 0.855 0.091 0.118 4.827 3.860 0.286 0.621 0.998 0.720 0.015 0.097 1.074 0.016 0.223 0.073 0.302 0.550 0.027 0.058 383 chr11 77953339 77958347 + 0 NA intron (NM_012296, intron 3 of 9) L1M2a|LINE|L1 55985 NM_020798 57558 Hs.531249 NM_020798 ENSG00000118369 USP35 - ubiquitin specific peptidase 35 protein-coding nan 0.873 0.530 0.157 0.421 0.096 0.128 2.142 0.839 0.243 0.192 0.150 0.381 0.152 0.111 8.638 5.869 10.133 4.528 0.573 0.700 0.983 0.389 0.921 1.172 0.806 1.258 0.328 0.355 0.186 0.143 4.825 7.072 0.191 0.170 0.223 0.524 0.546 0.421 0.089 0.123 0.115 0.128 0.150 0.059 0.089 11.376 0.097 336 chr11 46347317 46391741 + 0 NA intron (NM_003646, intron 1 of 30) CpG 573 NM_001199266 8525 Hs.502461 NM_003646 ENSG00000149091 DGKZ DAGK5|DAGK6|DGK-ZETA|hDGKzeta diacylglycerol kinase zeta protein-coding nan 1.442 3.073 1.600 0.817 0.440 1.503 0.227 0.091 0.722 0.486 0.687 4.700 0.317 0.126 3.288 4.733 0.633 0.936 1.888 1.797 1.994 0.786 1.533 1.491 0.564 1.010 0.587 0.798 1.139 0.940 2.793 4.557 2.118 2.229 0.368 nan 1.293 0.738 1.793 0.836 0.908 0.836 1.503 0.687 0.801 0.558 3.505 0.120 271 chr10 63591947 63603869 + 0 NA Intergenic Intergenic -63105 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 0.670 nan 1.308 0.089 0.352 0.147 0.043 2.576 0.121 0.074 0.096 0.622 0.360 4.580 0.138 0.456 0.284 6.688 10.744 0.469 0.529 0.339 0.117 0.831 0.847 0.560 0.747 0.566 0.455 0.308 0.161 0.159 0.189 0.575 0.760 0.294 nan 0.791 0.508 0.019 0.044 0.119 0.040 0.043 0.622 0.033 0.068 0.034 0.083 1551 chr7 13755643 13768193 + 0 NA Intergenic MER103C|DNA|hAT-Charlie 264221 NM_001163152 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding nan 1.055 nan 0.126 0.249 0.178 0.246 0.264 0.166 0.592 0.530 0.388 0.328 0.043 0.112 nan 0.291 0.356 0.352 0.342 0.551 0.755 0.212 0.342 0.425 4.432 4.978 0.426 0.377 1.101 0.613 0.126 0.078 1.511 1.301 0.132 0.240 0.654 0.593 0.040 0.128 0.290 0.451 0.246 0.388 0.117 0.108 0.039 0.051 1700 chr8 145686766 145693230 + 0 NA intron (NM_138496, intron 1 of 4) intron (NM_138496, intron 1 of 4) 420 NM_138496 50626 Hs.459379 NM_032687 ENSG00000187954 CYHR1 CHRP cysteine and histidine rich 1 protein-coding 3.374 1.851 nan 4.337 2.859 1.766 1.912 1.241 0.150 0.871 0.231 5.626 12.305 1.559 0.079 2.147 2.967 3.237 4.619 nan 5.929 nan 1.099 6.750 6.155 1.679 2.506 2.897 4.062 1.976 1.743 2.465 3.679 1.902 1.859 1.812 2.694 1.429 0.586 2.772 4.818 0.380 1.035 1.912 5.626 0.972 2.850 1.522 0.810 1377 chr5 32582518 32588057 + 0 NA promoter-TSS (NM_006713) promoter-TSS (NM_006713) -318 NM_006713 10923 Hs.229641 NM_006713 ENSG00000113387 SUB1 P15|PC4|p14 SUB1 homolog, transcriptional regulator protein-coding 3.377 3.655 nan 5.489 2.349 1.635 2.140 8.354 2.020 3.573 1.927 8.147 7.291 2.841 0.107 3.340 4.002 3.589 4.940 5.726 4.918 3.576 2.153 7.410 7.105 3.703 4.581 4.098 6.266 5.849 5.928 3.085 4.925 3.083 3.343 2.137 2.120 2.774 1.611 0.804 2.680 0.849 0.991 2.140 8.147 1.243 3.261 2.012 0.513 1688 chr8 143252570 143307803 + 0 NA intron (NR_024378, intron 1 of 2) intron (NR_024378, intron 1 of 2) 469 NR_024378 619434 Hs.393308 NR_024378 ENSG00000254008 LINC00051 C8orf43|NCRNA00051 long intergenic non-protein coding RNA 51 ncRNA 1.501 0.815 nan 0.138 1.654 0.864 0.514 0.050 0.076 0.198 0.102 2.111 2.008 0.047 0.065 0.753 1.371 0.087 0.130 nan 4.827 nan 0.100 0.196 0.209 0.589 0.817 1.361 1.516 1.462 1.177 0.741 1.038 0.575 0.569 0.847 1.856 0.793 0.577 2.730 1.161 0.105 0.265 0.514 2.111 0.359 0.201 0.479 0.734 905 chr18 74197939 74209857 + 0 NA intron (NR_136504, intron 1 of 1) CpG 290 NR_136504 101927989 Hs.665186 NR_136504 ENSG00000265778 LOC101927989 - uncharacterized LOC101927989 ncRNA nan nan 1.408 2.722 3.782 2.131 4.105 0.025 0.027 2.702 1.212 7.220 7.793 0.745 0.083 2.358 3.275 4.367 4.999 6.460 nan 7.781 4.023 4.319 4.142 0.100 0.230 6.357 nan 3.645 3.545 0.980 2.816 5.313 3.891 3.257 4.501 1.945 1.213 0.206 2.415 0.848 2.291 4.105 7.220 0.861 2.209 1.682 1.889 1424 chr5 137666374 137675773 + 0 NA intron (NM_001318098, intron 1 of 13) intron (NM_001318098, intron 1 of 13) -2151 NM_001135647 51307 Hs.54056 NM_016605 ENSG00000120709 FAM53C C5orf6 family with sequence similarity 53 member C protein-coding 3.446 2.140 nan 1.652 3.274 1.920 1.402 1.801 0.154 1.133 0.550 3.411 6.243 2.608 0.123 2.242 2.818 3.718 5.195 4.047 4.894 4.235 3.402 8.632 9.227 2.743 3.472 4.079 5.333 4.588 4.228 3.483 4.765 4.448 5.718 3.338 4.506 1.362 0.762 0.756 2.120 0.816 1.090 1.402 3.411 0.871 1.514 1.293 1.319 308 chr11 12742111 12751517 + 0 NA intron (NM_021961, intron 2 of 12) MIR|SINE|MIR 50845 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 0.913 nan 1.779 4.157 2.810 1.213 2.146 1.046 0.102 1.744 0.620 6.192 4.557 0.115 0.084 nan 1.006 0.950 3.033 5.064 4.762 6.043 2.522 0.662 0.801 1.801 nan 4.755 5.160 0.365 0.229 0.336 0.619 2.678 3.666 0.348 0.870 2.707 nan 5.666 3.588 0.779 0.839 2.146 6.192 0.259 0.528 0.165 0.126 11 chr1 3235019 3286010 + 0 NA intron (NM_199454, intron 3 of 16) L1MEf|LINE|L1 -110633 NM_014448 27237 Hs.87435 NM_014448 ENSG00000130762 ARHGEF16 GEF16|NBR Rho guanine nucleotide exchange factor 16 protein-coding 1.311 nan 1.041 0.368 1.028 0.507 0.632 0.076 0.082 0.065 0.047 0.028 1.415 0.070 0.091 0.164 0.098 0.108 0.157 0.360 0.373 0.105 0.043 0.164 0.192 0.141 nan nan 0.163 nan 0.151 0.207 0.145 0.082 0.080 0.108 0.119 0.195 0.265 6.609 0.517 0.017 0.006 0.632 0.028 0.621 0.267 0.015 0.022 593 chr14 57188317 57289452 + 0 NA Intergenic Intergenic 33497 NM_001270525 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding nan nan 3.068 0.339 0.591 0.321 0.473 0.090 0.093 0.126 0.147 0.308 0.285 0.049 0.112 0.287 0.232 2.400 2.100 0.462 0.542 0.837 0.320 0.421 0.436 0.137 0.208 0.689 0.608 7.227 6.767 0.229 0.332 0.906 1.283 7.893 15.311 nan 0.630 0.035 0.164 0.367 0.134 0.473 0.308 0.158 0.041 0.114 6.323 1790 chrX 128220795 128227912 + 0 NA Intergenic Intergenic 433129 NM_003069 6594 Hs.152292 NM_003069 ENSG00000102038 SMARCA1 ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2|hSNF2L SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 protein-coding 0.619 nan 1.320 0.500 7.777 3.653 0.981 0.023 2.952 1.652 0.799 0.196 0.016 0.061 0.280 0.211 0.318 0.530 0.160 0.229 4.412 1.903 0.134 0.117 0.202 0.215 0.209 0.195 0.341 0.255 0.023 0.112 4.301 3.514 0.321 0.364 1.574 0.887 0.008 1.136 0.150 0.981 0.799 0.125 0.072 0.087 598 chr14 61185452 61192600 + 0 NA intron (NM_017420, intron 1 of 2) CpG 1826 NM_017420 51804 Hs.97849 NM_017420 ENSG00000100625 SIX4 AREC3 SIX homeobox 4 protein-coding nan nan 5.252 6.026 5.490 3.314 4.139 2.794 0.295 1.158 0.487 7.977 8.599 3.406 0.102 2.328 3.116 3.186 4.502 12.328 10.031 3.100 0.906 nan 8.643 1.827 2.395 5.034 nan 5.497 7.112 2.592 6.908 3.372 2.336 1.099 1.764 1.795 1.038 5.359 10.062 0.680 7.517 4.139 7.977 0.938 1.102 2.363 0.451 232 chr1 234719788 234768470 + 0 NA intron (NM_001077397, intron 1 of 1) intron (NM_001077397, intron 1 of 1) 1142 NM_001077397 359948 Hs.350268 NM_182972 ENSG00000168264 IRF2BP2 - interferon regulatory factor 2 binding protein 2 protein-coding 5.190 4.061 5.285 5.096 8.077 4.001 3.713 2.647 0.225 3.976 2.099 5.007 9.624 1.466 0.138 2.926 4.474 3.845 8.919 7.194 6.478 nan 1.516 4.630 4.565 2.719 3.639 nan 7.264 4.317 5.131 2.220 3.081 6.515 7.799 3.507 6.333 nan 1.321 2.540 2.316 2.303 2.268 3.713 5.007 1.028 1.701 1.706 2.860 563 chr13 115044497 115048979 + 0 NA promoter-TSS (NM_080687) promoter-TSS (NM_080687) -321 NM_023011 65110 Hs.533855 NM_023011 ENSG00000169062 UPF3A HUPF3A|RENT3A|UPF3 UPF3 regulator of nonsense transcripts homolog A (yeast) protein-coding 5.556 6.111 6.993 11.102 6.355 3.642 11.293 2.805 0.686 2.061 1.211 8.618 14.801 4.960 0.189 13.216 12.916 6.588 9.856 11.155 10.647 11.892 5.516 8.592 9.050 1.529 1.929 9.894 13.565 9.459 9.986 6.318 10.815 10.754 12.180 10.035 7.843 1.632 0.843 11.802 12.229 2.354 6.678 11.293 8.618 2.141 4.330 4.281 2.344 725 chr16 90084293 90090074 + 0 NA promoter-TSS (NM_001288708) promoter-TSS (NM_001288708) -644 NM_001288708 79007 Hs.301394 NM_024043 ENSG00000003249 DBNDD1 - dysbindin domain containing 1 protein-coding nan nan 3.703 6.366 6.632 3.906 9.805 0.837 0.084 1.383 0.853 8.913 7.517 0.804 0.072 nan 4.564 3.903 5.798 6.060 5.341 6.899 2.034 nan 4.877 2.733 nan 3.101 5.841 nan 4.022 2.455 5.893 4.644 7.434 4.039 4.440 nan 1.850 2.702 3.425 1.928 1.428 9.805 8.913 1.572 4.694 2.327 0.974 245 chr1 249131468 249134067 + 0 NA intron (NM_024836, intron 1 of 3) CpG 390 NM_024836 79894 Hs.521151 NM_024836 ENSG00000171161 ZNF672 - zinc finger protein 672 protein-coding 10.665 10.807 8.941 12.900 11.998 5.738 4.125 5.037 0.491 5.797 2.872 6.784 17.016 5.215 0.144 7.566 10.611 15.083 21.591 15.997 13.063 15.660 9.162 23.442 23.302 5.421 5.695 8.179 9.459 6.944 8.289 1.867 3.821 10.760 7.663 7.014 9.821 4.665 2.489 7.611 5.290 1.692 2.986 4.125 6.784 1.459 4.818 1.331 3.811 839 chr17 80396552 80422064 + 0 NA promoter-TSS (NM_001033046) promoter-TSS (NM_001033046) -601 NM_001100407 79415 Hs.163113 NM_001033046 ENSG00000178927 C17orf62 - chromosome 17 open reading frame 62 protein-coding 2.034 2.137 1.553 2.007 3.275 1.629 1.465 1.141 0.232 1.112 0.523 3.224 3.725 1.093 0.126 2.785 nan 1.384 2.175 nan 3.478 3.250 1.350 2.443 2.522 1.299 1.867 3.083 6.381 0.806 0.946 1.097 1.752 1.418 1.541 1.464 1.828 1.615 0.987 1.308 2.282 0.272 0.575 1.465 3.224 0.363 1.753 0.376 0.577 1437 chr5 169526806 169535200 + 0 NA Intergenic Intergenic -1914 NM_144769 2299 Hs.87236 NM_012188 ENSG00000168269 FOXI1 FKH10|FKHL10|FREAC-6|FREAC6|HFH-3|HFH3 forkhead box I1 protein-coding nan 0.673 0.706 0.021 0.251 0.114 0.046 0.160 0.057 0.076 0.048 0.043 0.472 0.026 0.067 0.311 0.355 5.229 3.658 0.508 0.358 0.159 0.050 1.551 1.598 0.101 0.231 0.393 0.682 0.411 0.275 0.206 0.292 0.341 0.361 0.080 0.168 1.991 0.955 0.020 0.108 0.068 0.057 0.046 0.043 0.070 0.024 0.118 0.014 1266 chr3 97534293 97558647 + 0 NA intron (NM_153605, intron 1 of 21) intron (NM_153605, intron 1 of 21) 5586 NM_153605 131544 Hs.733378 NM_153605 ENSG00000080200 CRYBG3 DKFZp667G2110|vlAKAP crystallin beta-gamma domain containing 3 protein-coding 1.558 1.085 1.768 0.320 0.625 0.291 0.316 0.323 0.092 0.842 0.496 0.840 0.632 0.227 0.101 0.358 0.216 0.440 0.610 2.611 2.214 0.764 0.238 0.585 0.557 1.914 2.509 0.963 1.246 8.045 7.652 0.135 0.282 1.172 1.352 1.570 2.198 1.228 0.693 0.199 0.903 0.410 0.428 0.316 0.840 0.690 1.351 0.076 1.686 307 chr11 12709817 12722817 + 0 NA intron (NM_021961, intron 2 of 12) intron (NM_021961, intron 2 of 12) 20348 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 1.278 nan 1.557 3.728 1.028 0.392 0.981 2.374 0.198 1.678 0.794 2.451 4.546 0.178 0.085 nan 1.131 0.642 1.458 2.401 2.418 1.141 0.407 0.772 0.775 4.424 nan 4.029 4.391 0.804 0.430 1.140 1.848 2.501 3.020 0.568 1.333 3.041 nan 3.131 0.562 0.535 0.236 0.981 2.451 0.127 0.809 1.250 0.143 1095 chr2 201848721 201854115 + 0 NA intron (NM_001321621, intron 10 of 10) intron (NM_001321621, intron 10 of 10) -22994 NR_033915 4999 Hs.444870 NM_006190 ENSG00000115942 ORC2 ORC2L origin recognition complex subunit 2 protein-coding 0.823 nan 0.728 0.096 0.384 0.118 0.047 0.153 0.120 0.071 0.156 0.022 0.338 0.040 0.039 0.451 0.321 8.797 4.041 0.191 0.322 0.248 0.099 0.700 0.664 0.479 0.667 0.302 0.423 0.355 0.121 0.352 0.469 0.087 0.038 0.319 0.679 0.280 0.344 0.061 0.033 0.017 0.161 0.047 0.022 0.057 0.073 0.164 1082 chr2 176970389 177006199 + 0 NA exon (NM_014213, exon 1 of 2) exon (NM_014213, exon 1 of 2) 881 NM_014213 3235 Hs.236646 NM_014213 ENSG00000128709 HOXD9 HOX4|HOX4C|Hox-4.3|Hox-5.2 homeobox D9 protein-coding 2.179 2.241 1.533 2.427 3.779 1.988 1.152 0.335 0.108 1.489 0.949 8.434 5.409 0.935 0.089 0.738 1.088 1.990 2.481 6.248 5.801 2.254 0.908 0.836 0.892 1.038 1.475 3.142 3.732 1.523 1.696 2.759 4.952 1.686 1.477 0.444 0.948 1.798 0.929 6.000 0.973 0.552 0.294 1.152 8.434 0.198 2.434 2.182 0.104 637 chr15 31616662 31622507 + 0 NA exon (NM_001302461, exon 1 of 2) exon (NM_001302461, exon 1 of 2) 526 NM_015995 51621 Hs.376443 NM_015995 ENSG00000169926 KLF13 BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1 Kruppel like factor 13 protein-coding 4.373 nan nan 4.592 6.085 3.273 3.931 3.074 0.327 3.644 1.490 9.857 11.395 2.963 0.093 5.424 7.739 3.739 6.008 8.451 6.073 5.498 1.352 8.284 7.477 1.753 2.412 5.228 9.041 5.678 7.974 2.304 5.036 7.181 5.531 1.818 2.266 0.936 0.532 3.511 6.340 2.992 4.787 3.931 9.857 2.285 4.486 2.511 0.785 1743 chr9 95086554 95089018 + 0 NA promoter-TSS (NM_001330722) promoter-TSS (NM_001330722) 36 NM_001012267 401541 Hs.713775 NM_001012267 ENSG00000188312 CENPP CENP-P centromere protein P protein-coding 5.248 4.368 6.423 11.181 6.990 3.114 5.525 4.021 0.132 3.287 1.448 5.760 8.125 3.904 0.177 8.166 6.813 9.926 14.159 10.463 12.533 7.616 5.485 13.883 16.143 3.796 4.739 11.044 18.850 21.002 19.101 7.300 9.361 12.113 15.847 8.982 6.974 6.850 3.523 1.667 4.298 1.902 2.143 5.525 5.760 2.286 2.507 2.119 2.414 1117 chr2 235577634 235604438 + 0 NA promoter-TSS (NR_132376) promoter-TSS (NR_132376) -276 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 1.112 nan 1.389 5.056 6.894 3.838 1.724 0.584 0.072 1.979 1.341 9.460 6.432 0.064 0.087 1.138 1.500 0.705 1.801 2.113 2.226 5.886 3.249 0.361 0.283 1.059 1.355 4.235 nan 0.591 0.365 0.868 1.851 1.661 1.552 0.392 0.658 2.733 1.073 3.732 0.861 0.531 1.493 1.724 9.460 0.137 0.734 2.545 0.055 1547 chr7 5592135 5611029 + 0 NA Intergenic AluSz|SINE|Alu -30854 NM_003088 6624 Hs.118400 NM_003088 ENSG00000075618 FSCN1 FAN1|HSN|SNL|p55 fascin actin-bundling protein 1 protein-coding 3.048 1.754 2.616 1.272 0.939 0.442 1.463 1.406 0.501 0.577 0.384 1.723 nan 4.012 0.211 1.955 1.799 1.781 nan 2.369 1.511 nan 0.970 4.201 4.347 1.269 1.894 nan 4.825 1.238 0.983 0.625 0.794 1.925 2.520 1.805 2.552 1.123 0.715 0.720 0.839 0.266 0.630 1.463 1.723 0.950 1.574 0.352 0.788 1404 chr5 71159847 71189040 + 0 NA Intergenic L1MA5A|LINE|L1 159453 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 1.100 nan 1.394 0.096 1.253 0.510 0.406 0.223 0.121 0.101 0.115 0.082 0.796 0.067 0.121 0.191 0.188 0.229 0.268 0.275 0.334 nan 0.745 0.127 0.136 0.591 nan 0.570 0.579 1.109 0.732 0.114 0.250 3.698 4.439 0.818 2.662 0.902 0.560 0.136 0.762 1.005 0.094 0.406 0.082 0.129 0.133 0.170 1.538 1083 chr2 177016001 177030191 + 0 NA Intergenic Intergenic -5709 NM_006898 3232 Hs.93574 NM_006898 ENSG00000128652 HOXD3 HOX1D|HOX4|HOX4A|Hox-4.1 homeobox D3 protein-coding 1.192 0.984 0.647 0.446 0.825 0.316 1.193 0.079 0.028 1.950 1.105 1.851 3.690 0.038 0.081 3.190 3.483 1.223 1.674 2.523 1.940 1.778 0.902 2.891 2.905 2.828 3.532 4.762 7.870 2.892 3.335 2.975 4.085 1.402 1.166 0.257 0.453 1.286 0.769 1.010 0.057 0.262 0.707 1.193 1.851 0.375 0.529 1.549 0.070 1733 chr9 36978897 36987258 + 0 NA intron (NM_001280553, intron 4 of 7) MER20B|DNA|hAT-Charlie 51399 NM_001280554 5079 Hs.654464 NM_016734 ENSG00000196092 PAX5 ALL3|BSAP paired box 5 protein-coding 0.881 nan 1.065 0.647 0.361 0.144 0.430 0.065 0.096 0.707 0.370 0.672 0.755 0.065 0.079 0.334 0.491 0.135 0.190 0.670 0.697 8.336 2.736 0.268 0.244 0.590 1.028 0.672 0.666 0.773 0.574 0.323 0.470 3.810 3.970 0.400 1.072 1.412 0.941 0.047 0.344 1.166 0.237 0.430 0.672 0.199 0.109 0.071 0.134 1690 chr8 143412970 143442095 + 0 NA intron (NM_145003, intron 2 of 13) intron (NM_145003, intron 2 of 13) 57078 NM_001291931 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 1.332 0.870 nan 0.659 0.555 0.276 0.218 0.057 0.056 0.237 0.151 2.374 1.563 0.022 0.056 0.744 1.338 0.209 0.260 nan 4.963 nan 0.184 0.517 0.438 0.459 0.712 2.281 2.791 1.020 1.490 0.376 0.478 0.351 0.312 0.200 0.344 1.240 0.747 5.205 1.024 0.075 0.169 0.218 2.374 0.349 0.665 0.047 0.086 1460 chr6 15087090 15092240 + 0 NA Intergenic Intergenic -156541 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 1.956 nan 2.867 0.441 0.660 0.341 0.435 0.160 0.156 0.091 0.142 0.812 0.274 0.022 0.083 0.506 0.268 0.287 0.693 0.879 0.917 1.364 0.393 0.363 0.355 0.699 1.027 8.047 7.129 0.719 0.539 0.174 0.568 2.722 2.292 0.599 1.996 1.523 1.004 3.752 4.088 0.517 6.029 0.435 0.812 0.076 0.059 0.172 0.311 1738 chr9 42717030 42730764 + 0 NA Intergenic AluSq2|SINE|Alu 5831 NM_199244 349334 Hs.712520 NM_199244 ENSG00000184659 FOXD4L4 FOXD4L2|FOXD4b|bA460E7.2 forkhead box D4-like 4 protein-coding 1.156 1.813 1.191 0.180 0.485 0.199 0.356 0.094 0.128 0.206 0.357 0.426 0.508 0.107 0.193 0.609 0.461 0.346 0.302 1.288 1.262 1.043 0.396 0.544 0.394 0.327 0.577 0.312 0.344 0.611 0.204 0.449 0.811 5.297 4.671 0.258 0.369 0.762 0.641 0.045 0.085 2.485 0.059 0.356 0.426 0.035 0.111 0.444 0.054 1453 chr6 6926520 6948230 + 0 NA Intergenic AluSz|SINE|Alu -170455 NM_001168344 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 1.059 1.207 0.858 0.600 0.459 0.245 0.353 0.101 0.090 0.260 0.225 5.755 0.448 0.040 0.095 1.626 1.931 0.241 0.392 1.935 1.933 1.152 0.697 0.416 0.485 0.249 0.428 0.947 0.744 1.024 0.740 0.261 0.456 0.198 0.247 0.850 1.179 1.264 0.806 0.523 0.614 0.021 1.619 0.353 5.755 0.050 0.743 0.109 0.529 960 chr19 41767670 41773593 + 0 NA promoter-TSS (NM_001321211) promoter-TSS (NM_001321211) -324 NM_001301016 11100 Hs.155218 NM_007040 ENSG00000105323 HNRNPUL1 E1B-AP5|E1BAP5|HNRPUL1 heterogeneous nuclear ribonucleoprotein U like 1 protein-coding 8.525 5.179 7.363 8.094 9.305 5.355 7.616 3.638 0.864 3.476 1.530 7.931 10.456 8.674 0.293 7.942 7.720 8.943 11.637 15.152 14.284 11.740 8.422 24.612 26.813 6.504 7.994 9.506 15.529 15.907 17.395 12.586 17.443 9.950 12.569 12.758 10.283 5.498 2.746 6.331 9.106 2.990 4.773 7.616 7.931 2.052 3.661 4.827 3.908 1489 chr6 42407714 42428494 + 0 NA intron (NM_033502, intron 2 of 17) intron (NM_033502, intron 2 of 17) 1685 NM_033502 55809 Hs.485392 NM_018415 ENSG00000124496 TRERF1 BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5 transcriptional regulating factor 1 protein-coding 2.440 1.480 1.541 1.318 1.461 0.719 1.652 0.842 0.209 0.579 0.414 2.799 2.270 1.286 0.123 2.698 3.477 0.858 0.978 2.563 2.359 4.107 1.277 1.550 1.740 1.162 1.607 2.780 nan 2.145 2.429 0.936 2.619 2.021 1.442 1.299 2.032 1.164 0.763 1.091 1.781 0.790 0.763 1.652 2.799 0.398 0.618 1.634 0.969 1140 chr20 21485893 21518698 + 0 NA Intergenic CpG -7631 NM_002509 4821 Hs.516922 NM_002509 ENSG00000125820 NKX2-2 NKX2.2|NKX2B NK2 homeobox 2 protein-coding 1.253 0.849 nan 0.177 3.936 2.099 0.160 0.113 0.074 0.913 0.453 1.948 1.017 0.062 0.066 0.702 0.951 0.496 0.668 7.188 7.137 3.944 1.288 0.284 0.233 0.669 1.020 0.292 0.774 2.668 2.575 0.183 0.267 1.461 1.834 0.189 0.274 2.559 1.094 0.049 0.073 0.350 0.266 0.160 1.948 0.857 2.227 0.027 0.079 211 chr1 212869248 212874059 + 0 NA intron (NM_018664, intron 1 of 2) MIRb|SINE|MIR 1674 NM_018664 55509 Hs.62919 NM_018664 ENSG00000123685 BATF3 JDP1|JUNDM1|SNFT basic leucine zipper ATF-like transcription factor 3 protein-coding 1.761 1.543 1.511 0.717 1.397 0.620 0.612 0.948 0.234 0.549 0.309 0.491 nan 0.603 0.083 0.355 0.410 9.795 5.039 1.504 1.235 nan 0.263 2.126 2.409 0.913 nan 0.662 1.050 1.232 0.757 0.272 0.253 0.452 0.432 1.414 2.158 0.658 0.543 0.279 0.284 0.060 0.182 0.612 0.491 0.323 0.064 0.057 0.560 1374 chr5 10348815 10359339 + 0 NA intron (NM_001270661, intron 1 of 22) CpG 326 NM_001270660 10299 Hs.432862 NM_005885 ENSG00000145495 MARCH6 DOA10|MARCH-VI|RNF176|TEB4 membrane associated ring-CH-type finger 6 protein-coding nan nan nan 9.138 4.844 2.136 1.484 3.061 0.459 4.085 2.325 6.473 nan 2.767 0.125 4.281 4.450 4.648 5.637 9.780 9.323 6.068 2.897 4.971 5.187 nan 7.349 5.943 9.655 7.770 8.415 2.472 4.253 7.239 8.198 3.353 nan 3.956 2.391 2.717 4.483 1.507 1.234 1.484 6.473 1.161 2.487 1.474 1.119 1018 chr2 17969571 17982722 + 0 NA Intergenic Intergenic -21640 NM_001105569 343930 Hs.705359 NM_001105569 ENSG00000151379 MSGN1 MSOG|pMsgn1 mesogenin 1 protein-coding 1.150 0.620 0.781 0.087 0.222 0.136 0.437 0.103 0.098 0.430 0.174 0.105 0.480 0.069 0.120 0.397 0.388 0.227 0.490 0.512 0.468 0.710 0.217 0.265 0.332 0.389 0.726 0.499 nan 1.021 0.709 0.228 0.521 0.051 0.100 0.382 nan 3.152 1.817 0.669 0.162 0.028 0.267 0.437 0.105 0.346 0.031 0.231 0.297 1053 chr2 114029917 114050011 + 0 NA Intergenic Intergenic -3466 NM_013952 7849 Hs.469728 NM_003466 ENSG00000125618 PAX8 - paired box 8 protein-coding 0.791 nan 0.926 0.087 0.224 0.127 0.162 0.696 0.096 0.047 0.080 0.131 nan 0.038 0.043 0.299 0.243 4.908 10.127 0.462 nan 0.539 0.175 0.466 0.512 0.161 0.303 0.327 0.450 0.393 0.185 0.465 0.510 0.040 0.052 0.256 0.391 0.152 0.238 0.106 0.065 0.005 0.036 0.162 0.131 0.044 0.020 0.230 0.098 1433 chr5 149010640 149014335 + 0 NA 3' UTR (NM_001001669, exon 13 of 13) 3' UTR (NM_001001669, exon 13 of 13) 51352 NM_001001669 389337 Hs.256206 NM_001001669 ENSG00000183111 ARHGEF37 - Rho guanine nucleotide exchange factor 37 protein-coding nan 1.981 0.678 0.316 0.244 0.130 0.167 0.062 0.132 0.093 0.023 0.097 0.990 0.089 0.086 1.442 1.512 13.869 9.828 0.209 0.224 5.289 0.593 1.998 2.321 0.244 0.415 2.328 3.146 0.460 0.155 1.049 1.354 0.744 0.958 0.235 0.241 1.305 0.644 0.362 0.453 0.086 0.167 0.097 0.443 0.508 0.067 465 chr12 32831188 32869582 + 0 NA intron (NM_001330380, intron 1 of 18) intron (NM_001330380, intron 1 of 18) 18251 NM_001278464 10059 Hs.556296 NM_005690 ENSG00000087470 DNM1L DLP1|DRP1|DVLP|DYMPLE|EMPF|EMPF1|HDYNIV dynamin 1 like protein-coding 1.391 nan 1.109 1.158 0.624 0.288 0.421 0.139 0.113 0.384 0.374 0.545 0.902 0.336 0.146 0.915 0.938 0.774 0.933 1.332 1.360 1.316 0.523 1.493 1.522 0.941 1.222 0.685 0.850 0.689 0.603 0.435 0.751 0.272 0.288 1.664 4.732 0.833 0.527 0.195 0.411 0.047 0.493 0.421 0.545 0.170 0.299 0.201 1.533 948 chr19 35737790 35741637 + 0 NA 5' UTR (NM_001260490, exon 1 of 7) 5' UTR (NM_001260490, exon 1 of 7) 154 NM_001260490 51599 Hs.466507 NM_015925 ENSG00000105699 LSR ILDR3|LISCH7 lipolysis stimulated lipoprotein receptor protein-coding 1.667 4.635 5.980 13.372 6.599 4.095 0.761 0.040 0.041 2.072 1.146 5.945 27.074 7.023 0.201 5.295 8.264 7.377 11.740 11.336 12.189 9.843 6.696 17.446 19.048 0.106 0.197 12.136 13.453 nan 0.089 10.456 15.683 6.277 5.699 0.099 0.154 4.697 2.800 5.738 6.374 1.972 1.524 0.761 5.945 0.874 0.053 3.593 0.033 1063 chr2 144066125 144084620 + 0 NA intron (NM_018460, intron 6 of 13) intron (NM_018460, intron 6 of 13) 188473 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 0.848 nan 0.844 0.085 0.238 0.110 0.138 0.154 0.121 0.103 0.107 0.159 0.348 0.059 0.054 0.295 0.177 0.167 0.288 0.185 0.270 0.159 0.079 0.207 0.216 3.800 3.603 0.283 0.325 0.426 0.181 0.124 0.180 0.041 0.030 0.371 0.565 0.251 0.312 0.048 0.024 0.015 0.078 0.138 0.159 0.087 0.027 0.037 0.054 1549 chr7 11012679 11025313 + 0 NA intron (NR_033436, intron 2 of 16) intron (NR_033436, intron 2 of 16) 5497 NR_033436 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding nan 2.035 nan 1.887 2.628 1.581 1.934 0.812 0.155 0.470 0.230 2.884 3.602 1.371 0.208 nan 3.233 1.949 2.434 3.204 2.663 2.610 1.372 12.989 12.812 2.140 2.712 3.575 5.373 2.411 2.353 0.994 1.833 3.116 3.313 2.875 3.319 1.509 0.943 1.704 1.318 0.657 1.138 1.934 2.884 0.658 1.555 0.853 0.946 252 chr10 3815281 3831058 + 0 NA intron (NR_027653, intron 2 of 3) L3|LINE|CR1 4304 NM_001300 1316 Hs.4055 NM_001300 ENSG00000067082 KLF6 BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 Kruppel like factor 6 protein-coding 1.558 2.569 2.580 3.025 3.677 1.929 2.982 5.317 0.521 1.888 0.723 4.030 5.134 7.452 0.131 2.645 3.320 4.005 7.549 3.820 2.922 8.652 8.772 5.238 5.223 1.715 2.011 2.695 5.775 1.522 2.316 0.838 1.723 2.858 3.032 3.075 3.173 1.869 1.102 0.500 2.233 0.445 0.924 2.982 4.030 0.331 1.165 0.458 1.096 128 chr1 154528866 154548036 + 0 NA Intergenic Intergenic -1806 NM_000748 1141 Hs.2306 NM_000748 ENSG00000160716 CHRNB2 EFNL3|nAChRB2 cholinergic receptor nicotinic beta 2 subunit protein-coding nan nan 2.051 1.250 1.547 0.812 2.147 0.750 0.126 1.248 0.719 1.407 6.014 0.903 0.117 2.815 2.939 1.703 2.078 3.525 nan 2.855 0.853 0.838 0.702 2.302 2.837 3.004 4.025 1.760 1.781 3.697 5.606 1.603 1.805 1.514 2.325 1.765 0.845 0.838 2.231 0.210 0.781 2.147 1.407 0.449 1.893 3.171 0.490 1575 chr7 44185917 44204197 + 0 NA intron (NM_000162, intron 1 of 9) MIRb|SINE|MIR 3830 NM_033507 2645 Hs.1270 NM_000162 ENSG00000106633 GCK FGQTL3|GK|GLK|HHF3|HK4|HKIV|HXKP|LGLK|MODY2 glucokinase protein-coding 3.092 1.248 nan 0.309 0.182 0.079 0.385 0.164 0.088 0.161 0.129 0.170 0.358 0.110 0.136 0.642 0.577 0.239 0.390 0.542 0.527 0.837 0.234 0.473 0.414 0.346 0.702 0.762 1.096 3.291 4.005 0.377 0.436 0.463 0.326 1.649 3.027 1.194 0.612 0.534 0.219 0.073 1.595 0.385 0.170 0.571 0.273 0.107 1.512 669 chr15 90559775 90619449 + 0 NA intron (NM_198526, intron 1 of 4) intron (NM_198526, intron 1 of 4) 39625 NR_036135 100422841 NR_036135 ENSG00000265871 MIR3174 - microRNA 3174 ncRNA nan nan nan 0.979 1.684 0.895 0.337 0.275 0.214 0.913 0.520 2.567 2.545 0.085 0.078 1.666 2.166 0.355 0.659 1.228 1.224 nan 0.441 5.274 5.601 0.405 0.639 3.162 3.191 nan 0.356 1.508 2.274 0.684 0.636 0.332 nan 0.475 0.380 1.002 1.308 0.137 0.174 0.337 2.567 0.225 0.552 1.566 0.137 1189 chr20 62762889 62809524 + 0 NA Intergenic Intergenic -9621 NM_004535 4661 Hs.279562 NM_004535 ENSG00000196132 MYT1 C20orf36|MTF1|MYTI|NZF2|PLPB1|ZC2H2C1|ZC2HC4A myelin transcription factor 1 protein-coding 2.158 3.643 2.120 1.045 3.034 1.575 0.850 0.078 0.115 0.992 0.492 4.952 1.684 0.097 0.115 4.346 nan 0.107 0.139 4.360 4.437 2.868 1.210 0.477 0.566 0.720 1.068 2.743 3.813 2.430 2.394 1.518 1.850 0.900 0.673 2.037 3.647 1.887 1.207 5.298 4.401 0.202 0.680 0.850 4.952 0.522 1.076 1.023 1.455 502 chr12 107519235 107528003 + 0 NA Intergenic Intergenic -35984 NM_004075 1407 Hs.151573 NM_004075 ENSG00000008405 CRY1 PHLL1 cryptochrome circadian clock 1 protein-coding 1.200 1.346 nan 0.341 4.076 1.882 2.272 0.166 0.276 2.456 1.385 5.754 6.888 0.037 0.164 0.385 0.399 0.306 0.329 7.329 8.446 1.993 0.704 0.476 0.487 0.389 0.769 1.062 2.503 1.623 1.552 0.192 0.180 2.127 1.885 0.451 1.194 2.516 1.556 4.271 3.993 0.471 0.027 2.272 5.754 0.298 0.174 0.046 0.197 782 chr17 40393010 40401767 + 0 NA intron (NM_012448, intron 1 of 18) AluSc|SINE|Alu 31036 NM_012448 6777 Hs.595276 NM_012448 ENSG00000173757 STAT5B STAT5 signal transducer and activator of transcription 5B protein-coding 1.281 1.296 nan 0.200 0.598 0.237 0.359 0.190 0.177 0.611 0.337 0.254 0.487 0.091 0.086 0.347 0.436 0.262 0.359 0.381 nan 0.445 0.185 0.452 0.651 1.215 1.750 0.735 nan 7.342 7.487 0.196 0.348 0.202 0.322 2.325 4.646 1.250 0.755 0.168 0.485 0.077 0.036 0.359 0.254 0.944 0.987 0.079 3.104 1165 chr20 48525978 48555984 + 0 NA intron (NR_134564, intron 2 of 2) MIR|SINE|MIR 8622 NR_134564 105372653 Hs.589895 NR_134564 LOC105372653 - uncharacterized LOC105372653 ncRNA nan nan 1.855 1.378 1.404 0.637 0.948 1.416 0.317 0.726 0.470 1.318 2.609 0.983 0.134 2.197 2.430 1.366 2.322 1.960 1.903 nan 2.045 2.268 2.407 1.355 1.877 2.013 3.357 nan 2.478 1.430 2.067 1.170 1.326 2.719 4.231 1.868 1.412 0.517 1.206 0.134 0.512 0.948 1.318 0.572 0.919 0.503 1.157 1116 chr2 235400992 235423479 + 0 NA Intergenic Intergenic -6538 NM_001282431 10123 Hs.111554 NM_005737 ENSG00000188042 ARL4C ARL7|LAK ADP ribosylation factor like GTPase 4C protein-coding 2.439 nan 2.245 0.861 1.520 0.809 2.489 0.156 0.072 0.802 0.581 1.658 5.398 0.120 0.124 0.368 0.271 0.828 1.359 2.783 1.827 3.392 1.076 0.552 0.616 0.859 1.187 1.633 nan 1.179 1.534 0.376 0.536 1.592 1.664 1.165 2.620 1.330 0.749 1.510 1.026 0.574 0.551 2.489 1.658 0.323 1.223 0.101 0.403 120 chr1 145541163 145558447 + 0 NA intron (NM_144698, intron 1 of 13) intron (NM_144698, intron 1 of 13) 596 NM_144698 148741 Hs.710624 NM_144698 ENSG00000198483 ANKRD35 - ankyrin repeat domain 35 protein-coding 1.556 nan 2.363 2.753 1.151 0.640 4.733 0.694 0.158 2.504 1.354 5.077 12.129 0.138 0.101 0.680 0.935 0.961 1.255 5.931 6.668 5.935 1.906 0.517 0.602 1.138 1.675 4.247 3.787 0.549 0.331 0.810 1.013 4.597 4.414 0.412 0.799 2.881 1.335 1.755 5.227 1.894 1.408 4.733 5.077 0.104 0.567 0.344 0.095 1387 chr5 50462248 50501263 + 0 NA Intergenic Intergenic -197203 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding nan nan 0.894 0.138 0.464 0.214 0.445 0.075 0.058 0.415 0.292 0.566 0.533 0.067 0.129 0.226 0.182 0.432 0.585 1.409 2.069 nan 0.932 0.070 0.051 0.168 0.203 0.344 0.473 nan 2.325 0.052 0.114 6.823 8.202 0.318 0.665 0.322 0.304 0.027 0.137 2.386 0.398 0.445 0.566 0.388 0.107 0.015 0.117 1528 chr6 157094432 157113285 + 0 NA intron (NM_020732, intron 1 of 19) intron (NM_020732, intron 1 of 19) -2993 NR_039676 100616154 NR_039676 ENSG00000271899 MIR4466 mir-4466 microRNA 4466 ncRNA nan 1.667 3.201 4.218 3.011 1.539 3.157 1.465 0.111 1.490 0.684 3.955 5.657 2.732 0.130 3.624 5.477 6.879 6.525 7.613 nan 6.228 2.558 6.519 6.384 1.659 2.167 3.383 5.175 7.876 9.234 1.539 3.744 4.315 4.127 5.082 nan 1.160 0.653 4.411 3.638 1.211 2.457 3.157 3.955 0.874 1.918 1.080 1.497 1718 chr9 14073980 14113259 + 0 NA intron (NM_001190738, intron 8 of 8) intron (NM_001190738, intron 8 of 8) 87182 NM_001282787 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding nan nan 1.335 0.566 0.563 0.323 0.467 0.488 0.102 0.454 0.446 0.512 1.668 0.069 0.114 0.209 0.120 2.374 4.086 0.705 0.854 0.929 0.365 0.221 0.157 6.068 7.679 1.417 1.834 0.370 0.181 0.232 0.350 1.209 1.136 0.306 0.799 1.374 0.885 3.903 0.161 0.252 0.156 0.467 0.512 0.015 0.131 0.091 0.063 1122 chr2 240209891 240217942 + 0 NA intron (NM_006037, intron 2 of 26) intron (NM_006037, intron 2 of 26) -13241 NR_036229 100423043 NR_036229 ENSG00000265215 MIR4269 - microRNA 4269 ncRNA 1.251 nan 1.841 1.382 7.448 4.024 0.860 0.083 0.020 1.033 0.663 3.888 3.315 0.129 0.092 1.837 2.041 0.406 0.614 4.309 3.291 3.828 1.259 0.785 0.798 0.566 0.985 2.463 2.576 0.477 0.397 1.225 1.416 0.569 0.861 0.247 0.358 1.102 0.760 4.377 1.358 0.047 0.541 0.860 3.888 0.133 0.544 0.500 0.139 1258 chr3 51994210 52004173 + 0 NA intron (NM_020418, intron 1 of 12) L2|LINE|L2 2259 NM_020418 57060 Hs.20930 NM_020418 ENSG00000090097 PCBP4 CBP|LIP4|MCG10 poly(rC) binding protein 4 protein-coding 2.772 1.633 nan 0.641 0.547 0.284 1.221 0.881 0.129 0.689 0.279 1.202 1.042 1.639 0.073 1.330 2.104 2.064 2.372 2.590 2.381 1.105 0.479 1.422 1.678 1.275 1.737 1.400 2.046 8.993 12.315 1.253 1.828 1.892 1.315 3.834 11.866 1.361 0.723 0.410 0.427 0.681 2.281 1.221 1.202 0.370 1.183 0.606 5.972 1037 chr2 60075533 60080515 + 0 NA Intergenic LTR13|LTR|ERVK 532147 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000223929 MIR4432HG - MIR4432 host gene ncRNA 0.559 0.469 nan 0.162 0.227 0.155 0.180 0.000 0.066 0.137 0.133 0.048 0.188 0.084 0.079 1.063 1.611 9.579 2.605 0.330 0.420 nan 0.096 0.171 0.230 0.192 0.316 0.305 0.232 0.303 0.177 0.284 0.252 0.109 0.040 0.172 0.280 0.693 0.539 0.043 0.144 0.018 0.058 0.180 0.048 0.057 0.040 0.021 0.026 730 chr17 4849467 4856287 + 0 NA promoter-TSS (NM_005022) promoter-TSS (NM_005022) -496 NM_005022 5216 Hs.494691 NM_005022 ENSG00000108518 PFN1 ALS18 profilin 1 protein-coding 6.948 2.908 5.158 5.022 9.754 4.701 7.208 2.842 0.330 2.691 1.137 6.442 10.528 4.044 0.115 6.187 9.333 5.334 6.346 8.277 5.706 7.291 2.356 11.647 11.527 2.546 4.398 9.873 12.346 7.352 8.300 2.037 4.421 3.409 2.839 6.280 10.609 2.275 0.856 7.473 5.117 0.976 3.154 7.208 6.442 2.493 7.181 2.815 6.708 1363 chr5 1311038 1359945 + 0 NA intron (NM_030782, intron 5 of 16) intron (NM_030782, intron 5 of 16) 9694 NM_030782 81037 Hs.444673 NM_030782 ENSG00000049656 CLPTM1L CRR9 CLPTM1 like protein-coding 0.846 1.913 6.084 1.849 1.353 0.652 0.476 0.332 0.125 0.618 0.493 2.330 1.672 3.278 0.196 1.338 1.520 0.615 nan 3.264 2.943 2.129 0.842 0.322 0.317 1.207 1.813 nan 2.381 nan 1.241 0.592 0.833 0.612 0.635 0.285 0.396 1.722 nan 1.369 1.514 0.134 0.395 0.476 2.330 0.368 0.944 0.461 0.195 496 chr12 96016249 96048384 + 0 NA Intergenic AluSz|SINE|Alu -10715 NR_077225 100132594 Hs.676211 NR_077225 ENSG00000257150 PGAM1P5 - phosphoglycerate mutase 1 pseudogene 5 pseudo 0.763 0.900 0.663 0.124 0.294 0.129 0.271 3.189 0.479 0.269 0.247 0.473 nan 0.084 0.137 0.252 0.227 1.689 5.994 0.636 0.731 0.353 0.125 0.315 0.309 0.389 nan 0.354 nan 0.383 0.176 0.137 0.200 0.131 0.209 0.383 0.690 0.949 0.849 0.059 0.094 0.033 0.035 0.271 0.473 0.021 0.238 0.028 0.211 1779 chr9 139218582 139224365 + 0 NA promoter-TSS (NM_001145638) promoter-TSS (NM_001145638) 306 NR_026964 26102 Hs.561893 NR_026964 ENSG00000262075 DKFZP434A062 - uncharacterized LOC26102 ncRNA nan 1.890 6.866 0.770 1.511 0.661 2.369 0.724 0.149 0.682 0.352 2.087 3.660 2.116 0.069 1.188 2.023 1.785 2.947 5.791 4.970 nan 0.828 1.060 1.298 2.284 3.233 1.552 2.807 8.935 11.100 1.210 2.202 1.890 1.473 2.527 2.833 1.671 1.160 1.784 1.305 0.442 0.440 2.369 2.087 2.937 0.643 0.735 0.814 1591 chr7 99677408 99688247 + 0 NA Intergenic Intergenic -2656 NM_001278284 7551 Hs.435302 NM_017715 ENSG00000166526 ZNF3 A8-51|HF.12|KOX25|PP838|Zfp113 zinc finger protein 3 protein-coding nan 1.828 nan 2.968 3.513 1.882 1.838 1.322 0.209 2.747 1.438 2.901 3.170 2.932 0.250 4.700 4.830 4.108 5.936 4.696 4.672 6.408 4.005 6.277 7.079 2.544 3.926 3.190 4.728 4.683 4.837 3.817 5.443 4.832 5.432 2.841 nan 4.710 2.594 1.444 2.608 0.865 0.796 1.838 2.901 0.931 1.262 1.381 0.536 316 chr11 18000502 18015419 + 0 NA intron (NM_012139, intron 8 of 10) intron (NM_012139, intron 8 of 10) 26749 NM_012139 26297 Hs.32470 NM_012139 ENSG00000129158 SERGEF DELGEF|Gnefr secretion regulating guanine nucleotide exchange factor protein-coding 0.701 nan 1.224 5.852 0.409 0.174 0.061 0.130 0.032 0.991 0.408 0.416 0.597 0.036 0.076 nan 1.011 0.339 0.386 1.962 2.277 3.139 1.402 0.225 0.322 0.531 nan 4.745 3.882 0.437 0.238 0.363 0.578 1.587 2.493 0.153 0.507 3.264 nan 0.769 0.180 0.249 0.021 0.061 0.416 0.019 1.084 0.066 0.074 1355 chr4 174252870 174258061 + 0 NA promoter-TSS (NM_001130689) promoter-TSS (NM_001130689) 44 NM_001130688 3148 Hs.434953 NM_002129 ENSG00000164104 HMGB2 HMG2 high mobility group box 2 protein-coding nan nan 3.648 11.452 8.839 4.974 2.556 3.033 0.157 2.850 1.438 8.572 15.526 5.158 0.154 5.615 6.246 8.883 nan 12.146 10.275 7.987 4.535 8.558 8.193 4.296 5.548 7.107 9.937 10.266 13.556 2.330 5.945 7.464 7.843 7.499 7.843 2.494 1.315 4.879 4.848 2.340 7.293 2.556 8.572 1.269 1.595 2.421 2.855 1685 chr8 134244771 134264741 + 0 NA intron (NM_001135242, intron 14 of 15) MIRb|SINE|MIR 51474 NM_080838 8840 Hs.492974 NM_003882 ENSG00000104415 WISP1 CCN4|WISP1c|WISP1i|WISP1tc WNT1 inducible signaling pathway protein 1 protein-coding nan 1.433 2.619 2.529 0.393 0.280 0.096 0.104 0.138 0.330 0.161 0.904 6.506 0.033 0.096 0.274 0.239 0.190 0.474 1.083 1.072 3.117 0.994 nan 1.226 0.221 0.422 3.171 2.561 1.248 1.484 0.326 0.585 0.534 0.338 0.563 1.537 0.966 0.693 0.676 0.963 0.067 0.100 0.096 0.904 0.286 1.320 0.417 0.712 524 chr13 23053379 23085750 + 0 NA Intergenic Intergenic 285140 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 0.463 0.639 0.566 0.129 0.118 0.049 0.047 0.102 0.097 0.053 0.058 0.074 0.258 7.395 0.202 0.413 0.262 0.235 nan 0.397 0.441 0.065 0.045 0.206 0.172 0.159 0.283 0.178 0.217 0.463 0.167 0.223 0.288 0.043 0.053 0.153 0.222 0.683 0.588 0.098 0.083 0.023 0.223 0.047 0.074 0.015 0.085 0.095 0.026 1268 chr3 114111722 114141429 + 0 NA intron (NM_001164343, intron 8 of 11) intron (NM_001164343, intron 8 of 11) -24086 NM_001164342 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 1.113 nan 1.006 0.176 0.780 0.497 0.456 1.170 0.132 0.360 0.316 3.191 1.070 0.019 0.083 1.840 2.549 3.160 4.324 2.514 nan 2.565 0.999 0.287 0.298 nan 2.735 0.297 0.339 0.678 0.335 1.536 2.134 0.146 0.205 0.508 1.056 1.488 1.114 0.325 1.104 0.026 0.107 0.456 3.191 0.094 0.178 1.662 0.391 1468 chr6 21497066 21543209 + 0 NA Intergenic Intergenic -8014 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 1.158 1.057 nan 1.034 1.547 0.807 0.533 0.230 0.153 0.886 0.766 1.620 nan 0.068 0.090 1.116 0.732 4.706 nan 3.283 2.995 nan 0.427 10.348 10.772 0.438 0.644 1.748 1.388 0.563 0.312 1.884 3.680 1.508 1.069 0.375 0.974 2.304 1.282 4.304 0.331 0.376 0.126 0.533 1.620 0.175 0.292 2.036 0.188 879 chr18 48553783 48559348 + 0 NA promoter-TSS (NM_005359) promoter-TSS (NM_005359) -18 NM_005359 4089 Hs.75862 NM_005359 ENSG00000141646 SMAD4 DPC4|JIP|MADH4|MYHRS SMAD family member 4 protein-coding nan 3.024 4.101 4.050 3.512 2.013 5.554 1.536 0.057 1.327 0.634 6.346 6.216 2.018 0.080 5.333 5.403 6.686 10.506 9.138 8.641 8.681 4.413 5.983 5.934 3.001 3.369 3.656 6.958 4.970 4.850 2.550 5.552 7.689 9.667 4.904 nan 5.267 2.752 2.389 2.477 1.813 2.411 5.554 6.346 0.616 1.623 1.458 2.009 114 chr1 114470866 114491689 + 0 NA intron (NM_198268, intron 1 of 15) AluSz|SINE|Alu -9130 NR_110726 101928846 Hs.232534 NR_110725 ENSG00000235527 HIPK1-AS1 - HIPK1 antisense RNA 1 ncRNA nan 1.396 1.617 0.659 0.790 0.404 0.617 0.994 0.201 0.368 0.162 0.648 1.634 0.734 0.153 0.787 0.957 1.198 1.817 1.328 nan 1.360 0.556 1.919 1.931 1.586 2.218 1.068 1.673 1.562 1.377 0.885 1.796 0.376 0.313 2.408 4.231 0.924 0.708 0.248 0.855 0.054 0.505 0.617 0.648 0.207 0.341 0.490 1.395 141 chr1 155879273 155882597 + 0 NA promoter-TSS (NM_001256821) promoter-TSS (NM_001256821) -229 NM_001256821 6016 Hs.491234 NM_006912 ENSG00000143622 RIT1 NS8|RIBB|RIT|ROC1 Ras like without CAAX 1 protein-coding nan nan 2.356 1.399 2.469 1.148 1.331 2.282 0.388 2.146 0.848 1.994 19.348 2.055 0.156 1.721 3.493 4.079 5.681 4.805 nan 4.860 1.785 0.256 0.378 2.178 3.128 3.363 3.812 2.135 2.193 1.833 4.080 1.916 2.165 2.421 3.486 1.674 0.871 1.218 2.567 0.315 1.214 1.331 1.994 0.437 3.330 1.183 0.853 299 chr11 6460102 6481933 + 0 NA intron (NM_006458, intron 11 of 12) L2b|LINE|L2 -8763 NM_000613 3263 Hs.426485 NM_000613 ENSG00000110169 HPX HX hemopexin protein-coding 0.591 0.741 0.860 0.998 0.495 0.312 0.221 0.127 0.118 0.165 0.132 4.873 0.411 0.049 0.056 0.572 0.536 0.368 0.409 4.983 6.367 1.163 0.261 0.522 0.568 0.330 0.537 1.862 1.477 0.363 0.168 0.373 0.368 0.163 0.168 0.275 0.714 0.941 0.589 1.149 2.131 0.030 0.127 0.221 4.873 0.013 0.037 0.077 0.160 677 chr16 754359 761631 + 0 NA Intergenic Intergenic -2170 NM_153350 146330 Hs.513244 NM_153350 ENSG00000127585 FBXL16 C16orf22|Fbl16|c380A1.1 F-box and leucine rich repeat protein 16 protein-coding 4.046 nan 1.329 1.470 1.727 0.761 6.767 0.048 0.612 0.241 2.626 5.175 0.840 0.033 2.620 4.237 0.091 0.149 4.000 3.503 6.792 2.791 0.265 0.241 1.302 nan 0.656 1.126 3.228 3.791 0.735 1.678 4.368 3.799 1.409 1.726 0.961 0.613 3.028 5.798 1.522 0.677 6.767 2.626 2.009 1.333 0.790 0.239 63 chr1 40279464 40370392 + 0 NA intron (NM_001312691, intron 1 of 9) AluSx3|SINE|Alu 24255 NM_001312692 54802 Hs.356554 NM_017646 ENSG00000043514 TRIT1 GRO1|IPPT|IPT|IPTase|MOD5|hGRO1 tRNA isopentenyltransferase 1 protein-coding 13.685 1.241 nan 17.084 3.226 1.655 6.698 0.291 0.132 0.361 0.289 7.942 2.311 0.338 0.132 0.531 0.674 0.443 0.801 3.872 5.135 0.804 0.363 0.865 0.902 0.914 nan 40.269 34.804 0.812 0.658 0.799 nan 0.124 0.178 1.074 2.574 30.849 21.336 0.791 0.678 0.029 12.310 6.698 7.942 0.142 0.113 0.390 0.692 292 chr10 133021984 133038350 + 0 NA intron (NM_174937, intron 4 of 11) intron (NM_174937, intron 4 of 11) 79817 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 0.523 0.646 0.630 0.102 3.779 1.803 0.187 0.037 0.019 0.172 0.186 1.405 0.324 0.007 0.067 0.210 0.091 0.054 0.086 0.484 0.571 1.596 0.658 0.048 0.067 0.065 0.118 0.471 0.526 0.139 0.105 0.174 0.243 0.732 0.622 0.090 0.087 1.259 0.721 0.292 0.163 0.228 0.010 0.187 1.405 0.218 0.013 0.054 0.053 955 chr19 39351234 39383285 + 0 NA intron (NM_001195833, intron 2 of 11) intron (NM_001195833, intron 2 of 11) 1660 NM_198445 126432 Hs.446933 NM_198445 ENSG00000187994 RINL - Ras and Rab interactor like protein-coding 1.543 2.093 2.874 2.730 1.919 0.986 0.336 0.218 0.232 1.813 0.887 1.378 1.710 0.200 0.138 0.681 1.091 0.290 0.480 1.363 1.507 5.836 2.254 0.766 0.749 0.461 0.796 3.173 2.510 nan 0.653 0.621 0.750 1.247 1.060 0.556 1.184 2.662 1.175 0.529 0.346 0.407 0.280 0.336 1.378 0.261 0.993 0.169 0.220 1275 chr3 114858906 114868323 + 0 NA intron (NM_015642, intron 1 of 9) intron (NM_015642, intron 1 of 9) 2513 NM_015642 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 4.463 nan 2.808 2.201 4.044 2.095 2.067 2.727 0.176 1.895 0.780 3.207 3.465 1.687 0.120 2.416 3.650 4.177 4.690 5.360 nan 5.160 2.648 4.436 5.047 nan 5.709 2.065 3.585 7.116 7.826 1.166 2.354 2.013 1.688 2.975 4.502 1.758 1.216 2.993 2.183 0.436 1.329 2.067 3.207 0.959 1.432 1.304 2.481 1572 chr7 36935932 36956607 + 0 NA intron (NM_001206482, intron 16 of 21) FRAM|SINE|Alu 12768 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 1.416 1.046 1.687 0.181 0.313 0.132 0.329 0.104 0.062 0.297 0.252 0.614 0.333 0.037 0.129 0.531 0.474 0.563 0.546 0.508 nan 0.965 0.319 0.565 0.551 0.529 nan nan nan 0.393 0.235 0.215 0.311 2.032 2.746 0.429 nan 1.398 0.854 0.011 0.107 0.666 0.108 0.329 0.614 0.047 1.104 0.123 0.685 186 chr1 183599759 183610695 + 0 NA promoter-TSS (NM_015149) promoter-TSS (NM_015149) 45 NM_015149 23179 Hs.497148 NM_015149 ENSG00000143344 RGL1 RGL ral guanine nucleotide dissociation stimulator like 1 protein-coding nan nan 2.041 1.207 1.325 0.573 1.884 2.547 0.321 1.572 1.233 0.963 3.386 0.964 0.139 3.152 4.292 4.933 4.792 2.704 nan 2.436 0.845 nan 5.461 4.466 5.554 1.314 1.673 3.423 2.964 2.740 5.617 2.933 3.299 1.496 nan 1.530 0.667 0.689 1.745 0.913 0.740 1.884 0.963 0.374 0.882 2.393 0.651 1749 chr9 123677507 123699888 + 0 NA intron (NM_001190945, intron 2 of 8) intron (NM_001190945, intron 2 of 8) 476 NM_005658 7185 Hs.531251 NM_005658 ENSG00000056558 TRAF1 EBI6|MGC:10353 TNF receptor associated factor 1 protein-coding nan nan 1.335 0.743 0.722 0.393 0.297 0.798 0.130 0.375 0.203 0.616 nan 0.388 0.082 0.360 0.571 0.346 0.762 1.055 1.368 0.720 0.283 0.644 0.742 1.127 nan 1.334 1.514 1.441 1.230 0.362 0.518 0.594 0.524 1.778 5.741 nan 0.799 1.005 0.244 0.103 0.138 0.297 0.616 0.249 0.880 0.071 2.301 1154 chr20 32306099 32322561 + 0 NA Intergenic AluSx|SINE|Alu -5236 NM_001282933 84905 Hs.516989 NM_032819 ENSG00000131061 ZNF341 - zinc finger protein 341 protein-coding 1.413 2.620 1.934 1.639 1.127 0.633 1.296 0.651 0.331 0.580 0.494 1.827 3.420 1.260 0.174 2.445 3.215 1.047 1.839 1.603 nan 4.430 1.494 1.716 1.755 1.319 1.829 2.399 2.899 2.472 2.461 1.211 1.991 2.510 2.436 1.222 nan 0.992 0.644 0.456 1.023 0.483 0.935 1.296 1.827 0.484 0.610 0.692 0.482 562 chr13 114198013 114208539 + 0 NA intron (NM_017905, intron 12 of 12) intron (NM_017905, intron 12 of 12) -35727 NR_026580 7027 Hs.79353 NM_007111 ENSG00000198176 TFDP1 DILC|DP1|DRTF1|Dp-1 transcription factor Dp-1 protein-coding 0.802 nan 0.892 3.140 0.776 0.397 1.382 0.116 0.108 0.104 0.078 2.220 1.853 0.061 0.073 0.899 0.952 0.369 0.642 3.658 3.516 1.162 0.359 0.288 0.265 0.082 0.169 2.560 3.323 0.378 0.242 0.503 0.469 0.345 0.361 0.389 0.422 1.071 0.570 0.826 5.965 0.073 0.256 1.382 2.220 0.078 0.105 0.084 0.089 1691 chr8 143472146 143495052 + 0 NA intron (NM_001291931, intron 1 of 10) intron (NM_001291931, intron 1 of 10) 1011 NM_001291931 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 1.712 0.903 nan 0.941 0.790 0.468 0.571 0.111 0.091 0.240 0.154 1.507 2.738 0.304 0.056 1.302 1.831 0.488 0.659 nan 3.335 nan 0.421 1.093 0.980 0.562 0.876 1.335 1.998 0.800 0.745 0.902 1.352 0.970 1.048 0.525 0.598 0.920 0.736 4.983 0.962 0.187 0.243 0.571 1.507 0.476 0.737 0.453 0.184 17 chr1 6496411 6559940 + 0 NA exon (NM_001265592, exon 21 of 22) exon (NM_001265592, exon 21 of 22) -1920 NM_148970 8718 Hs.462529 NM_003790 ENSG00000215788 TNFRSF25 APO-3|DDR3|DR3|LARD|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR TNF receptor superfamily member 25 protein-coding 1.335 nan 1.426 2.117 1.272 0.729 0.360 0.123 0.121 0.390 0.298 1.270 1.324 0.370 0.105 2.797 4.527 1.299 1.466 3.235 2.935 1.362 0.446 8.005 8.159 0.351 nan nan 3.878 nan 0.551 2.897 4.186 0.480 0.371 0.389 0.676 0.945 0.528 2.207 1.732 0.083 0.285 0.360 1.270 0.446 0.278 2.683 0.066 1026 chr2 25620241 25628254 + 0 NA intron (NM_001256308, intron 14 of 17) intron (NM_001256308, intron 14 of 17) -58788 NR_135490 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 2.812 1.312 4.846 0.835 0.590 0.199 2.544 0.102 0.128 4.172 2.217 0.852 3.950 0.067 0.155 0.858 1.798 0.314 0.403 9.449 7.923 11.133 4.531 0.649 0.820 3.017 3.529 2.040 nan 3.760 5.135 0.287 0.333 3.758 3.227 0.931 1.787 4.453 2.291 2.160 2.582 1.152 5.620 2.544 0.852 2.093 0.241 0.123 0.552 510 chr12 119870677 119887335 + 0 NA intron (NM_178499, intron 2 of 13) intron (NM_178499, intron 2 of 13) 106489 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding nan nan 0.500 0.068 0.718 0.304 0.780 0.068 0.077 0.281 0.124 0.293 0.900 0.051 0.097 0.240 0.187 0.175 0.130 nan nan nan 0.668 0.124 0.097 0.509 0.720 nan nan 0.549 0.300 0.152 0.132 0.165 0.277 0.228 0.272 nan 1.799 0.030 0.150 0.029 0.052 0.780 0.293 0.161 1.414 0.006 0.081 821 chr17 75032272 75051536 + 0 NA Intergenic MER66C|LTR|ERV1 -42821 NR_027058 654434 Hs.720923 NR_027058 ENSG00000234912 SNHG20 C17orf86|LINC00338|NCRNA00338|SCARNA16HG small nucleolar RNA host gene 20 ncRNA 1.148 1.123 1.529 0.213 1.527 0.886 1.050 0.140 0.101 0.771 0.518 1.056 1.060 0.066 0.104 2.469 2.366 0.391 0.475 1.887 1.621 2.320 0.688 0.616 0.670 nan 0.925 1.345 1.938 1.465 1.186 0.702 0.848 0.720 0.654 0.417 0.652 nan 1.403 1.232 0.621 0.157 0.160 1.050 1.056 0.264 0.301 0.343 0.177 874 chr18 45788264 45884740 + 0 NA intron (NM_001318841, intron 2 of 4) AluY|SINE|Alu 99291 NM_001318841 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding nan 1.653 0.990 2.157 0.582 0.292 1.882 0.060 0.048 0.291 0.197 1.126 4.569 0.038 0.072 0.497 0.631 0.744 1.325 2.198 2.589 3.247 0.995 0.183 0.203 0.247 0.401 3.210 2.346 0.756 0.656 0.284 0.385 1.903 2.127 0.210 nan 5.365 2.603 3.396 1.128 0.487 0.281 1.882 1.126 0.144 2.107 0.160 0.069 747 chr17 16881037 16887943 + 0 NA Intergenic L2a|LINE|L2 -9088 NM_012452 23495 Hs.158341 NM_012452 ENSG00000240505 TNFRSF13B CD267|CVID|CVID2|IGAD2|RYZN|TACI|TNFRSF14B TNF receptor superfamily member 13B protein-coding 0.820 0.656 2.203 0.241 0.230 0.116 0.287 0.022 0.047 0.070 0.123 0.069 0.392 0.047 0.036 0.493 0.456 0.197 nan 1.673 1.199 4.586 0.813 0.135 0.144 0.149 0.301 0.515 0.570 nan 1.319 0.149 0.192 0.959 1.122 0.377 0.606 0.471 0.311 0.024 0.077 0.125 0.287 0.069 0.506 6.466 0.043 0.108 754 chr17 26821587 26841914 + 0 NA Intergenic MIRb|SINE|MIR -19209 NM_003593 8456 Hs.58611 NM_003593 ENSG00000109101 FOXN1 FKHL20|RONU|WHN forkhead box N1 protein-coding nan nan nan 0.151 0.348 0.213 0.176 0.095 0.040 0.077 0.066 0.153 2.319 0.069 0.094 0.743 0.771 0.283 0.511 0.517 0.484 1.055 0.295 0.437 0.428 0.314 0.562 1.390 1.246 7.131 7.448 0.822 0.918 0.412 0.294 1.357 nan 1.481 0.889 0.117 0.357 0.042 0.063 0.176 0.153 1.959 0.059 0.183 1.872 708 chr16 51456004 51500636 + 0 NA Intergenic Intergenic -293137 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding nan nan nan 0.190 0.262 0.144 0.656 0.065 0.065 0.098 0.095 0.123 0.251 0.029 0.076 0.336 0.223 0.166 0.238 0.255 0.289 0.080 0.049 0.342 0.377 0.103 nan nan nan nan 0.150 0.135 0.169 0.038 0.059 1.089 nan nan 0.544 0.026 0.056 0.013 0.211 0.656 0.123 0.024 0.043 0.073 0.816 884 chr18 53066819 53093924 + 0 NA intron (NM_001330604, intron 5 of 19) intron (NM_001330604, intron 5 of 19) -9145 NM_001243232 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding nan 1.028 1.287 0.214 0.696 0.364 2.278 1.260 0.093 1.023 0.683 1.091 1.362 2.378 0.110 0.615 0.505 4.367 5.518 2.832 2.412 6.579 2.869 0.737 0.868 3.187 3.553 0.645 0.641 2.785 2.286 1.131 1.656 5.847 6.012 0.337 0.652 nan 3.157 0.664 1.185 1.704 0.926 2.278 1.091 1.030 2.653 1.380 0.119 1459 chr6 14765723 14827104 + 0 NA Intergenic Intergenic -449793 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 1.399 nan 1.115 0.773 0.537 0.309 1.127 0.250 0.094 0.133 0.105 0.898 0.353 0.062 0.077 0.508 0.538 1.706 2.145 0.811 0.745 0.790 0.319 0.340 0.322 0.645 0.878 0.596 0.594 0.843 0.613 0.444 0.650 0.703 1.083 0.750 3.320 0.655 0.525 0.158 0.352 0.144 0.207 1.127 0.898 0.175 0.042 0.251 0.865 301 chr11 8277855 8313798 + 0 NA Intergenic L1ME4a|LINE|L1 -5644 NM_001270428 4004 Hs.654426 NM_002315 ENSG00000166407 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 protein-coding 2.173 1.230 0.898 0.345 1.452 0.706 0.599 0.143 0.049 0.292 0.169 1.233 0.731 0.057 0.069 1.660 2.539 0.281 0.329 1.641 1.488 0.972 0.409 0.339 0.373 1.287 1.609 0.985 1.422 4.633 5.245 0.422 0.723 1.434 1.331 1.227 3.447 0.932 0.633 2.724 0.459 0.630 0.823 0.599 1.233 0.349 0.150 0.182 1.763 1671 chr8 109949709 109977211 + 0 NA Intergenic Intergenic -136193 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 0.911 nan nan 0.392 0.275 0.146 0.121 0.111 0.138 0.040 0.077 0.125 0.963 0.027 0.095 0.323 0.217 0.199 0.537 0.435 0.597 nan 2.585 0.611 0.629 0.383 nan 1.248 nan nan 0.161 0.103 0.246 0.377 0.518 0.243 nan 0.239 0.301 0.196 0.587 0.128 0.061 0.121 0.125 0.011 0.100 0.064 0.076 1043 chr2 70120435 70128450 + 0 NA intron (NR_037862, intron 3 of 6) intron (NR_037862, intron 3 of 6) 3367 NR_037862 11017 Hs.54649 NM_006857 ENSG00000124380 SNRNP27 27K|RY1 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 protein-coding nan nan 1.379 0.825 0.980 0.832 0.660 0.604 0.100 0.393 0.241 1.021 1.954 0.986 0.114 6.256 4.827 12.902 6.643 1.728 2.161 2.048 0.723 4.681 5.052 1.427 1.911 1.578 2.498 2.085 1.790 3.270 4.133 0.564 0.816 1.396 1.916 nan 0.530 0.355 0.640 0.071 0.314 0.660 1.021 0.171 0.428 0.616 0.248 560 chr13 112560044 112635967 + 0 NA Intergenic Intergenic -28619 NR_120392 100505996 Hs.654853 NR_120392 ENSG00000224243 LINC00403 - long intergenic non-protein coding RNA 403 ncRNA 0.588 nan 0.786 0.762 1.033 0.510 1.324 0.066 0.068 0.273 0.164 3.266 1.902 0.033 0.067 0.452 0.236 0.119 0.232 6.825 6.286 0.715 0.292 0.049 0.055 0.042 0.069 2.732 2.718 0.292 0.160 0.369 0.443 0.260 0.249 0.115 0.169 0.499 0.305 1.231 1.143 0.037 0.190 1.324 3.266 0.013 0.034 0.139 0.036 1621 chr7 150053936 150087547 + 0 NA 3' UTR (NM_001099695, exon 3 of 3) 3' UTR (NM_001099695, exon 3 of 3) 2483 NM_014374 29803 Hs.647086 NM_013400 ENSG00000214022 REPIN1 AP4|RIP60|ZNF464|Zfp464 replication initiator 1 protein-coding 3.208 1.431 nan 2.708 3.145 1.560 2.592 0.961 0.158 2.721 1.340 6.764 3.805 2.046 0.134 4.730 5.081 2.194 3.083 4.458 4.208 4.156 1.837 3.933 4.100 1.593 2.184 3.899 4.995 3.199 2.956 3.380 5.310 4.020 3.770 3.028 4.708 4.126 1.968 2.296 2.914 1.164 0.745 2.592 6.764 0.779 3.336 3.439 1.425 154 chr1 159747425 159753043 + 0 NA promoter-TSS (NM_001319658) promoter-TSS (NM_001319658) -502 NM_001319659 54935 Hs.425801 NM_017823 ENSG00000158716 DUSP23 DUSP25|LDP-3|MOSP|VHZ dual specificity phosphatase 23 protein-coding nan nan 3.137 0.811 0.943 0.541 0.096 0.331 0.099 0.459 0.237 0.767 1.879 0.407 0.097 0.771 0.816 7.972 3.416 0.880 nan 1.599 0.418 0.936 0.758 0.524 1.170 1.957 2.958 0.710 0.541 1.140 1.983 1.436 1.577 0.552 0.813 0.639 0.545 0.385 1.996 0.372 0.269 0.096 0.767 0.070 0.054 0.821 0.132 327 chr11 34615081 34623055 + 0 NA Intergenic Intergenic -23520 NM_012153 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 0.586 0.940 nan 0.116 0.518 0.315 0.269 0.426 0.040 0.119 0.126 0.352 0.891 0.056 0.160 3.527 4.115 7.719 2.643 0.280 0.377 1.106 0.389 0.658 0.699 0.260 0.380 0.330 0.180 0.333 0.161 1.080 1.941 0.161 0.145 0.222 nan 0.654 0.476 0.076 0.095 0.048 0.040 0.269 0.352 0.024 0.127 0.871 0.078 1317 chr3 189465227 189483959 + 0 NA intron (NM_001329964, intron 3 of 13) intron (NM_001329964, intron 3 of 13) -32856 NM_001114982 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 1.053 1.250 0.812 0.119 0.418 0.315 0.233 0.179 0.163 0.200 0.203 0.083 0.605 0.029 0.073 0.275 0.127 0.221 0.594 0.320 0.391 4.428 1.291 0.317 0.261 0.189 0.310 0.399 0.466 0.585 0.263 0.094 0.141 0.605 0.536 0.286 0.648 0.647 0.469 0.051 0.056 0.125 0.106 0.233 0.083 0.031 0.027 0.021 0.151 700 chr16 30536853 30548145 + 0 NA 3' UTR (NM_001305018, exon 3 of 3) 3' UTR (NM_001305018, exon 3 of 3) 3792 NM_023931 65988 Hs.592032 NM_023931 ENSG00000169955 ZNF747 - zinc finger protein 747 protein-coding 4.438 2.892 3.968 4.932 4.490 2.109 3.818 1.172 0.170 1.371 0.512 4.175 10.854 1.940 0.106 4.935 4.646 3.812 6.506 4.525 3.809 7.501 3.152 8.582 8.899 3.221 4.257 9.084 12.999 4.965 5.804 3.476 4.508 5.714 5.302 3.931 3.725 3.094 1.587 3.015 2.403 1.230 2.319 3.818 4.175 1.591 3.025 1.795 1.162 132 chr1 154940524 154951200 + 0 NA intron (NM_001130041, intron 1 of 12) AluSq2|SINE|Alu 1097 NM_001202859 6464 Hs.433795 NM_003029 ENSG00000160691 SHC1 SHC|SHCA SHC adaptor protein 1 protein-coding nan nan 2.730 2.447 2.477 1.219 3.348 6.511 1.092 1.792 0.823 2.443 12.108 5.095 0.185 4.678 6.236 5.568 9.362 5.117 nan 3.843 1.956 6.865 6.954 3.551 4.269 7.162 8.802 2.650 2.093 5.458 7.082 2.566 3.428 4.237 6.793 1.959 1.003 2.263 4.500 0.587 3.891 3.348 2.443 0.673 5.530 4.394 1.988 917 chr19 5577411 5598232 + 0 NA intron (NM_014649, intron 19 of 20) CpG-12677 -19776 NR_027064 257000 Hs.515575 NM_153375 ENSG00000223573 TINCR LINC00036|NCRNA00036|PLAC2|onco-lncRNA-16 tissue differentiation-inducing non-protein coding RNA ncRNA 0.663 0.949 1.638 2.346 1.983 1.062 1.354 0.072 0.085 0.241 0.214 2.347 0.911 0.083 0.071 0.643 0.630 0.504 0.479 0.853 0.922 1.478 0.410 0.579 0.565 0.509 0.824 9.590 nan 0.545 0.385 0.243 0.324 0.414 0.346 0.157 0.302 1.404 0.796 3.142 0.353 0.082 0.083 1.354 2.347 0.084 0.561 0.043 0.067 797 chr17 46120685 46140649 + 0 NA intron (NM_001330261, intron 2 of 5) intron (NM_001330261, intron 2 of 5) 4981 NM_003204 4779 Hs.514284 NM_003204 ENSG00000082641 NFE2L1 LCR-F1|NRF1|TCF11 nuclear factor, erythroid 2 like 1 protein-coding 1.712 1.701 nan 2.018 3.032 1.513 1.959 2.452 0.299 1.604 0.726 1.878 4.355 1.567 0.140 3.165 3.503 2.600 3.903 2.478 nan 2.915 1.334 10.350 10.605 1.689 2.133 6.036 nan 3.350 2.780 4.263 4.484 1.976 2.419 2.286 4.888 1.434 0.796 1.544 3.406 0.506 1.163 1.959 1.878 0.588 1.267 1.523 0.922 1019 chr2 24297900 24308590 + 0 NA intron (NM_147184, intron 4 of 5) AluSx|SINE|Alu 3501 NM_001291328 375190 Hs.710370 NM_198553 ENSG00000219626 FAM228B - family with sequence similarity 228 member B protein-coding 2.417 1.470 2.324 2.172 1.480 0.694 1.172 1.370 0.219 1.163 0.567 2.306 5.005 3.729 0.161 2.728 2.969 3.270 4.505 5.124 4.192 5.529 1.935 11.490 12.551 1.299 1.990 8.524 8.157 2.920 3.150 1.687 2.699 0.709 0.572 2.045 2.944 2.336 1.256 4.666 1.531 0.067 0.743 1.172 2.306 0.610 1.654 0.862 0.927 1606 chr7 115102111 115139010 + 0 NA Intergenic Intergenic -249151 NR_126407 104355291 NR_126407 ENSG00000233607 LINC01392 - long intergenic non-protein coding RNA 1392 ncRNA nan 0.629 0.899 0.112 0.272 0.126 0.742 0.182 0.104 0.195 0.208 0.517 0.245 0.059 0.175 0.431 0.231 0.167 0.280 0.161 0.219 0.116 0.088 0.228 0.242 0.402 0.585 0.302 0.364 0.415 0.218 0.160 0.262 7.471 8.437 0.292 0.594 0.517 0.498 0.041 0.093 2.431 0.069 0.742 0.517 0.050 0.036 0.053 0.081 625 chr14 103565260 103595516 + 0 NA Intergenic Intergenic 8858 NR_138038 105370683 Hs.252904 NR_138038 LINC00677 C14orf74 long intergenic non-protein coding RNA 677 ncRNA 1.652 1.181 1.828 0.740 1.947 1.023 0.781 1.759 0.326 0.192 0.165 3.254 1.375 0.219 0.080 2.256 3.586 1.405 1.898 2.982 3.086 0.724 0.214 1.440 1.352 0.167 0.354 3.357 3.572 2.017 2.013 1.682 2.573 0.284 0.243 0.379 0.777 1.313 0.881 1.215 0.600 0.035 0.097 0.781 3.254 0.225 0.760 1.560 0.082 656 chr15 66979968 67001109 + 0 NA Intergenic L2a|LINE|L2 -4136 NR_027654 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 1.344 1.064 nan 0.341 0.651 0.341 1.138 0.928 0.258 0.266 0.123 1.345 2.122 1.205 0.093 0.329 0.293 3.645 6.446 0.927 0.917 nan 0.109 0.228 0.300 0.951 1.505 0.368 0.603 2.275 2.259 0.301 0.519 1.257 1.024 1.069 1.623 0.586 0.474 0.355 0.358 0.519 1.204 1.138 1.345 0.592 0.386 0.233 0.695 1322 chr3 193900876 193931437 + 0 NA Intergenic Intergenic 7940 NR_125404 100505920 Hs.436654 NR_125403 ENSG00000225742 LINC02036 - long intergenic non-protein coding RNA 2036 ncRNA nan 1.633 1.231 0.896 1.818 1.076 0.369 0.254 0.112 1.226 0.737 0.689 nan 0.113 0.088 1.037 1.232 1.192 1.110 0.721 0.832 4.329 1.911 0.847 0.845 0.302 0.456 1.435 1.680 0.829 0.464 0.823 0.952 1.016 1.082 0.497 1.023 1.098 0.785 2.263 0.505 0.281 0.268 0.369 0.689 0.137 0.585 0.423 0.295 1302 chr3 179039537 179043085 + 0 NA promoter-TSS (NM_016331) promoter-TSS (NM_016331) -240 NM_016331 51193 Hs.632578 NM_016331 ENSG00000121864 ZNF639 ANC-2H01|ANC_2H01|ZASC1 zinc finger protein 639 protein-coding 8.425 4.860 4.651 5.831 5.093 2.430 3.505 5.078 1.044 5.475 3.442 4.083 9.382 3.455 0.160 4.783 6.075 6.327 9.073 10.021 7.966 12.830 4.807 10.166 10.624 6.301 9.245 8.042 12.722 15.901 20.789 3.583 9.905 9.751 7.713 10.726 9.710 4.007 2.320 1.095 4.576 1.934 4.917 3.505 4.083 1.412 2.533 2.234 4.067 1300 chr3 169528530 169532624 + 0 NA promoter-TSS (NM_001172779) promoter-TSS (NM_001172779) -3 NM_001172780 151827 Hs.591289 NM_153353 ENSG00000171757 LRRC34 - leucine rich repeat containing 34 protein-coding 5.152 4.414 2.426 6.462 5.031 2.187 2.246 1.002 0.197 3.299 1.403 6.096 3.562 0.426 0.042 1.513 2.483 0.301 0.184 7.760 7.052 17.538 4.811 0.573 0.673 0.787 0.982 nan 10.645 nan 9.578 1.327 2.491 11.027 7.749 3.938 3.148 4.927 3.001 6.903 2.728 1.816 0.816 2.246 6.096 0.875 2.702 0.504 3.400 1173 chr20 55204150 55217935 + 0 NA intron (NM_003222, intron 5 of 6) MER2|DNA|TcMar-Tigger 6684 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 2.623 2.512 6.820 0.051 0.143 0.046 0.094 0.043 0.116 0.022 0.066 0.050 2.228 0.369 0.115 1.304 nan 1.874 2.246 0.170 0.174 0.100 0.071 0.469 0.495 0.148 0.194 0.108 0.144 0.678 0.609 1.423 3.551 0.083 0.059 0.141 0.194 0.174 0.289 0.277 0.349 0.014 0.052 0.094 0.050 0.141 0.037 0.696 0.036 1495 chr6 45515203 45547430 + 0 NA Intergenic Intergenic 141002 NM_001278478 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA runt related transcription factor 2 protein-coding 1.507 0.869 0.798 0.206 0.334 0.154 0.195 0.615 0.141 0.063 0.107 0.171 0.327 0.057 0.111 0.987 0.787 1.758 6.396 0.337 0.294 0.114 0.060 0.625 0.649 0.121 0.216 0.862 nan 0.384 0.209 0.354 0.503 0.095 0.106 0.481 1.405 0.541 0.585 0.160 0.102 0.020 0.104 0.195 0.171 0.018 0.081 0.209 0.337 217 chr1 220688360 220706834 + 0 NA Intergenic Intergenic -3928 NM_001286126 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 2.794 nan 2.995 4.965 3.577 2.016 1.587 0.182 0.044 1.288 0.625 5.590 7.403 0.357 0.116 1.285 1.855 1.393 2.169 5.902 nan 0.261 0.155 3.518 3.647 0.927 1.237 4.667 4.838 3.001 2.653 0.512 1.228 1.122 0.707 2.251 2.487 2.737 1.306 3.338 0.839 0.200 1.138 1.587 5.590 0.670 1.703 0.262 0.741 583 chr14 36960212 36998858 + 0 NA intron (NR_138596, intron 1 of 4) intron (NR_138596, intron 1 of 4) 3455 NM_001101341 253970 Hs.509165 NM_001101341 ENSG00000229415 SFTA3 NANCI|SFTPH|SP-H surfactant associated 3 protein-coding 2.148 7.491 0.514 7.054 2.565 1.394 2.262 0.139 0.083 0.516 0.313 8.436 14.891 0.076 0.106 0.169 0.085 0.801 0.883 23.866 22.330 0.128 0.071 0.282 0.306 1.417 1.741 7.450 7.483 20.181 20.749 0.135 0.154 0.473 0.347 0.086 0.145 3.308 1.775 19.542 13.110 0.170 0.133 2.262 8.436 0.238 2.913 0.023 0.023 596 chr14 60617800 60633173 + 0 NA intron (NM_001322280, intron 1 of 6) L3|LINE|CR1 6725 NM_016029 51635 Hs.59719 NM_016029 ENSG00000100612 DHRS7 CGI-86|SDR34C1|retDSR4|retSDR4 dehydrogenase/reductase 7 protein-coding nan nan 2.200 2.339 1.583 0.922 2.089 0.818 0.105 0.531 0.451 1.222 3.057 0.409 0.131 1.235 1.672 0.867 1.451 2.658 2.488 2.353 0.877 nan 3.168 1.268 1.874 3.692 nan 3.951 3.057 1.111 2.025 3.540 4.304 1.054 2.369 1.698 0.978 0.582 1.958 0.905 3.105 2.089 1.222 0.528 0.592 0.781 0.972 1596 chr7 103433522 103439593 + 0 NA intron (NM_173054, intron 3 of 63) intron (NM_173054, intron 3 of 63) 193406 NM_173054 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding nan 0.669 1.474 0.079 0.248 0.158 0.213 0.100 0.131 0.411 0.283 0.236 0.315 0.054 0.148 2.615 1.158 12.586 6.468 0.313 0.509 0.656 0.419 10.993 11.174 0.633 0.823 0.337 0.297 0.437 0.169 0.734 1.267 0.295 0.392 0.359 nan 0.811 0.905 0.028 0.154 0.048 0.106 0.213 0.236 0.084 0.098 0.101 889 chr18 53487220 53536209 + 0 NA Intergenic Intergenic 75716 NR_110755 101927273 Hs.434335 NR_110755 ENSG00000260930 LINC01416 - long intergenic non-protein coding RNA 1416 ncRNA nan 0.740 0.769 0.103 0.256 0.152 0.313 0.193 0.069 0.067 0.074 0.188 0.277 2.439 0.115 0.376 0.253 0.403 0.544 0.468 0.558 0.395 0.207 0.531 0.509 0.464 0.682 0.314 0.354 0.530 0.359 0.150 0.246 0.151 0.188 0.179 0.276 nan 1.114 0.034 0.057 0.031 0.067 0.313 0.188 0.032 0.045 0.034 0.076 1047 chr2 85472567 85487285 + 0 NA intron (NM_031283, intron 3 of 11) intron (NM_031283, intron 3 of 11) 39151 NR_136323 102724579 Hs.669216 NR_136323 LOC102724579 - uncharacterized LOC102724579 ncRNA nan 1.041 nan 0.274 0.746 0.316 0.355 2.093 0.207 0.159 0.089 0.878 1.064 0.133 0.113 0.850 0.449 1.257 2.491 0.893 0.965 0.990 0.376 0.270 0.339 0.105 0.218 1.120 0.936 0.845 0.527 0.243 0.334 0.148 0.199 2.218 7.572 1.513 0.993 0.584 0.127 0.059 0.103 0.355 0.878 0.052 0.094 0.064 3.451 1395 chr5 56985511 56997924 + 0 NA Intergenic MamRep1527|LTR|LTR 45230 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA nan nan 0.750 0.014 0.154 0.130 0.268 0.433 0.103 0.051 0.053 0.019 0.350 6.592 0.204 0.247 0.195 1.449 2.274 0.141 0.135 nan 0.043 0.125 0.128 0.331 0.541 0.155 0.182 nan 0.122 0.064 0.106 0.096 0.147 0.224 0.484 0.335 0.312 0.049 0.086 0.031 0.044 0.268 0.019 0.031 0.082 0.024 0.071 225 chr1 229475846 229479395 + 0 NA intron (NM_145257, intron 2 of 3) intron (NM_145257, intron 2 of 3) 1068 NM_145257 126731 Hs.585011 NM_145257 ENSG00000154429 CCSAP C1orf96|CSAP centriole, cilia and spindle associated protein protein-coding 6.193 5.080 6.310 5.508 5.575 2.794 4.572 1.604 0.315 3.299 2.118 6.473 8.810 3.422 0.138 8.308 7.806 13.519 15.558 14.160 10.171 6.448 2.223 8.239 8.135 4.560 5.452 5.221 9.748 3.039 4.020 2.283 4.265 4.563 2.833 5.184 7.285 3.155 1.606 2.973 2.234 1.148 3.617 4.572 6.473 1.456 2.513 1.709 1.424 675 chr15 102514046 102519952 + 0 NA TTS (NR_003659) TTS (NR_003659) 2297 NR_034090 100288486 Hs.644359 NR_034090 ENSG00000248472 DDX11L9 - DEAD/H-box helicase 11 like 9 pseudo 1.930 nan 1.727 0.506 0.550 0.300 5.405 0.297 0.081 1.575 0.906 0.912 nan 0.308 0.136 0.609 0.869 0.525 0.826 5.664 5.198 1.334 0.538 0.726 0.961 1.694 2.308 1.071 0.955 1.342 0.994 0.410 0.429 2.038 1.570 0.527 0.799 4.458 1.996 10.044 4.852 1.677 0.285 5.405 0.912 1.075 1.333 0.048 0.420 420 chr11 129142176 129170300 + 0 NA Intergenic Intergenic -89643 NM_003658 8538 Hs.591944 NM_003658 ENSG00000043039 BARX2 - BARX homeobox 2 protein-coding 0.956 1.081 2.540 2.088 1.327 0.650 0.474 0.106 0.017 1.043 0.779 1.532 3.807 1.220 0.119 1.791 1.780 0.812 0.776 1.690 1.680 2.910 0.859 0.892 0.850 0.843 1.171 6.739 7.500 1.090 1.173 2.594 4.950 1.936 1.702 0.763 nan 2.278 1.185 0.458 0.656 0.373 0.181 0.474 1.532 0.117 1.682 3.131 0.210 1605 chr7 114283499 114304076 + 0 NA TTS (NR_037439) TTS (NR_037439) 387 NR_037439 100500896 NR_037439 ENSG00000272230 MIR3666 - microRNA 3666 ncRNA nan 0.729 1.096 0.427 0.948 0.627 0.298 0.212 0.079 0.838 0.619 3.168 2.522 0.100 0.147 0.504 0.312 0.479 0.368 1.724 1.741 5.234 3.204 0.264 0.237 2.023 2.216 1.279 2.022 0.711 0.366 0.185 0.302 1.180 2.339 0.594 1.103 0.921 0.698 3.643 5.532 0.362 0.147 0.298 3.168 0.260 0.265 0.058 0.234 401 chr11 113944641 113971343 + 0 NA intron (NM_001018011, intron 2 of 6) intron (NM_001018011, intron 2 of 6) 26704 NM_001018011 7704 Hs.591945 NM_006006 ENSG00000109906 ZBTB16 PLZF|ZNF145 zinc finger and BTB domain containing 16 protein-coding 0.565 0.856 0.483 3.045 0.464 0.234 0.782 0.041 0.036 0.302 0.155 0.701 0.663 0.053 0.101 0.677 nan 0.112 0.162 0.880 0.813 0.663 0.180 0.112 0.114 0.286 nan 2.492 2.404 0.377 0.214 0.606 0.735 0.417 0.421 0.227 0.508 1.741 1.013 0.089 0.097 0.125 0.065 0.782 0.701 0.066 0.228 0.162 0.157 1653 chr8 71313494 71317374 + 0 NA promoter-TSS (NM_001321712) promoter-TSS (NM_001321712) 56 NM_001321713 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 9.742 3.588 5.589 7.252 6.341 3.188 5.366 5.033 0.620 3.659 1.581 9.309 20.045 6.069 0.138 3.117 7.213 4.382 6.188 15.582 12.204 7.144 2.997 12.380 11.956 4.634 5.722 5.676 7.519 3.710 5.119 3.182 9.752 8.300 6.295 4.995 7.334 5.263 2.581 4.215 9.386 4.291 6.896 5.366 9.309 0.706 6.561 3.952 2.957 398 chr11 111284943 111319737 + 0 NA Intergenic Intergenic -13429 NR_046085 100132078 Hs.672662 NR_046085 ENSG00000255428 LOC100132078 - uncharacterized LOC100132078 ncRNA 1.283 1.933 1.070 0.666 3.202 1.722 1.446 0.197 0.076 1.004 0.668 6.982 5.606 0.059 0.106 3.039 nan 3.145 5.923 7.793 9.732 4.140 1.035 0.793 0.750 1.711 nan 3.825 2.532 1.256 0.960 1.482 3.020 2.302 2.330 0.270 0.674 1.187 0.852 5.620 0.213 1.037 1.266 1.446 6.982 0.816 1.462 2.172 0.191 306 chr11 12688752 12704565 + 0 NA intron (NM_021961, intron 1 of 12) CpG 689 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 1.733 nan 3.747 2.896 1.436 0.949 1.578 1.804 0.192 1.786 0.938 5.167 6.036 1.337 0.099 nan 2.796 1.769 2.901 6.232 5.859 2.558 0.976 3.398 3.267 2.476 nan 1.820 3.462 1.830 1.690 0.841 1.762 3.125 3.442 1.669 2.673 2.316 nan 4.335 2.205 0.886 1.196 1.578 5.167 0.264 0.627 0.770 0.486 849 chr18 19597934 19608315 + 0 NA Intergenic Intergenic 145805 NR_102763 100128893 Hs.514745 NR_102763 ENSG00000266010 GATA6-AS1 BM742401|locus5689 GATA6 antisense RNA 1 (head to head) ncRNA 0.582 0.653 1.068 0.673 0.145 0.062 0.444 0.101 0.078 0.167 0.140 0.073 0.322 0.042 0.060 0.417 0.215 0.273 0.497 0.280 0.377 9.617 2.350 0.369 0.291 0.087 0.188 0.104 0.116 0.912 0.787 0.183 0.223 0.284 0.164 0.404 0.638 0.548 0.591 0.043 0.051 0.019 0.069 0.444 0.073 0.069 0.029 0.133 481 chr12 57067510 57084925 + 0 NA intron (NM_006601, intron 1 of 7) AluJo|SINE|Alu 5564 NR_104219 10728 Hs.50425 NM_006601 ENSG00000110958 PTGES3 P23|TEBP|cPGES prostaglandin E synthase 3 protein-coding nan 2.285 1.863 2.571 3.686 1.808 2.349 0.882 0.229 1.739 0.958 2.133 3.890 1.261 0.129 nan 3.387 4.703 4.869 4.236 nan 4.422 2.200 7.717 8.260 2.243 nan 4.004 nan 3.524 3.678 2.051 4.337 3.588 4.077 4.891 5.374 2.439 1.423 1.252 2.639 0.905 1.709 2.349 2.133 0.686 1.385 1.136 2.396 90 chr1 59267397 59285903 + 0 NA intron (NR_108106, intron 1 of 1) intron (NR_108106, intron 1 of 1) 25827 NR_108106 100131060 Hs.680604 NR_034014 ENSG00000234807 LINC01135 - long intergenic non-protein coding RNA 1135 ncRNA 1.108 1.176 1.163 1.310 0.904 0.606 0.533 0.610 0.174 0.459 0.196 1.655 1.232 0.428 0.121 0.485 0.734 0.535 0.793 1.665 1.405 4.702 1.328 1.375 1.524 1.053 1.603 2.289 2.552 0.529 0.357 0.578 0.731 0.934 1.144 0.327 nan 1.327 0.890 0.212 0.263 0.148 0.447 0.533 1.655 0.147 0.500 0.379 0.111 765 chr17 35860339 35881016 + 0 NA intron (NM_007026, intron 1 of 2) intron (NM_007026, intron 1 of 2) 20726 NM_007026 11072 Hs.91448 NM_007026 ENSG00000276023 DUSP14 MKP-L|MKP6 dual specificity phosphatase 14 protein-coding nan 1.043 0.714 0.068 0.483 0.263 0.288 0.178 0.094 0.187 0.174 0.209 0.416 0.121 0.100 3.835 3.676 1.397 1.274 nan 0.601 0.448 0.154 0.763 0.690 0.525 0.743 0.423 0.544 nan 3.169 1.242 2.067 0.191 0.147 0.781 1.429 0.492 0.529 0.121 0.169 0.042 0.219 0.288 0.209 0.221 0.063 1.804 0.313 1218 chr22 24107063 24121146 + 0 NA promoter-TSS (NM_005940) promoter-TSS (NM_005940) -902 NM_005940 4320 Hs.143751 NM_005940 ENSG00000099953 MMP11 SL-3|ST3|STMY3 matrix metallopeptidase 11 protein-coding 1.559 nan 1.521 1.239 1.005 0.539 0.806 0.433 0.284 0.846 0.292 2.401 4.665 0.757 0.070 2.372 2.433 1.517 2.022 2.790 2.221 3.552 1.168 2.466 2.749 1.380 2.230 2.109 2.659 2.560 2.626 0.976 1.280 2.115 2.333 1.542 2.381 3.533 1.764 0.499 1.565 0.354 0.913 0.806 2.401 1.133 1.037 0.540 0.750 1282 chr3 127307796 127320289 + 0 NA Intergenic MLT1F1|LTR|ERVL-MaLR -3158 NM_004526 4171 Hs.477481 NM_004526 ENSG00000073111 MCM2 BM28|CCNL1|CDCL1|D3S3194|DFNA70|MITOTIN|cdc19 minichromosome maintenance complex component 2 protein-coding 4.897 nan 2.780 2.611 3.906 2.135 2.675 3.278 0.504 3.108 1.374 2.916 3.694 1.405 0.063 3.497 3.290 3.211 5.268 5.728 5.326 9.997 4.888 6.120 6.237 3.568 nan 3.567 5.623 8.101 8.938 5.588 7.499 1.839 2.376 5.016 5.797 2.742 1.511 3.449 3.078 0.390 1.673 2.675 2.916 0.964 1.243 1.921 2.083 468 chr12 51413097 51427534 + 0 NA promoter-TSS (NM_001174127) promoter-TSS (NM_001174127) -116 NR_033422 4891 Hs.505545 NM_000617 ENSG00000110911 SLC11A2 AHMIO1|DCT1|DMT1|NRAMP2 solute carrier family 11 member 2 protein-coding nan 1.812 1.004 1.679 1.427 0.618 1.156 1.579 0.261 0.654 0.537 1.975 1.059 0.874 0.101 nan 1.855 2.632 3.990 3.124 nan 5.292 1.747 2.846 2.940 0.893 nan 1.776 nan 1.744 1.560 0.943 1.702 2.777 3.411 1.163 1.596 1.457 0.873 0.389 1.343 0.737 0.596 1.156 1.975 0.424 0.535 0.853 0.427 1381 chr5 34230873 34266096 + 0 NA Intergenic Intergenic -123851 NR_037951 100534612 Hs.171929 NR_037951 ENSG00000273294 C1QTNF3-AMACR - C1QTNF3-AMACR readthrough (NMD candidate) ncRNA 1.109 2.479 nan 2.986 1.120 0.548 0.941 1.077 0.205 2.256 1.586 2.394 9.067 0.395 0.165 1.217 1.132 1.351 2.311 3.221 3.076 3.722 1.791 1.837 1.871 5.652 5.693 2.448 3.725 5.148 4.140 0.646 1.419 3.550 4.682 0.668 0.993 2.771 1.315 0.594 1.205 2.127 1.126 0.941 2.394 0.756 1.243 0.912 0.319 775 chr17 37924368 37959165 + 0 NA intron (NM_001284515, intron 5 of 7) intron (NM_001284515, intron 5 of 7) -7288 NM_001284516 22806 Hs.371680 NM_012481 ENSG00000161405 IKZF3 AIO|AIOLOS|ZNFN1A3 IKAROS family zinc finger 3 protein-coding nan 1.167 0.627 0.156 1.504 0.744 0.505 0.095 0.118 0.226 0.239 1.025 1.246 0.031 0.085 0.522 0.657 0.240 0.577 nan 0.886 0.374 0.178 0.673 0.710 0.193 0.341 1.541 1.170 nan 0.170 0.429 0.624 0.458 0.590 0.322 0.513 1.034 0.779 3.151 0.841 0.090 0.391 0.505 1.025 0.111 0.023 0.189 0.177 441 chr12 8228971 8236862 + 0 NA Intergenic L2c|LINE|L2 -1891 NM_015509 25977 Hs.555927 NM_015509 ENSG00000089818 NECAP1 EIEE21 NECAP endocytosis associated 1 protein-coding 2.791 nan nan 4.520 2.070 0.849 2.120 0.483 0.082 1.403 0.829 2.135 4.135 1.552 0.158 1.658 1.809 2.923 3.894 nan 5.692 9.122 3.452 6.940 7.413 1.831 2.346 2.134 3.190 4.305 4.008 2.284 4.096 2.951 3.005 2.942 nan 1.870 1.109 1.659 1.779 0.337 1.745 2.120 2.135 5.222 0.669 1.735 0.978 1030 chr2 33135498 33141763 + 0 NA intron (NR_027099, intron 5 of 5) L2a|LINE|L2 -13564 NR_027097 100271832 Hs.743603 NR_027097 LOC100271832 - uncharacterized LOC100271832 ncRNA 3.179 nan nan 0.084 0.208 0.205 0.349 0.118 0.215 0.049 0.119 0.133 0.207 0.068 0.096 4.718 4.622 3.527 4.000 3.737 3.547 2.553 3.411 3.743 nan 3.060 3.054 3.176 2.501 nan 3.253 4.279 3.570 2.647 2.828 3.821 3.026 4.243 3.440 0.027 0.115 0.122 0.026 0.349 0.133 0.030 0.080 0.048 0.098 1603 chr7 114046090 114073649 + 0 NA intron (NM_148898, intron 1 of 17) intron (NM_148898, intron 1 of 17) 4817 NR_033767 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding nan 0.862 2.680 0.164 1.326 0.728 0.506 0.292 0.082 1.133 0.807 3.061 3.425 0.157 0.142 3.033 2.508 1.735 1.548 0.354 0.523 3.538 3.739 0.275 0.280 3.218 3.781 0.736 1.097 1.666 1.319 0.337 0.563 3.625 4.289 1.237 1.852 0.848 0.649 0.068 3.095 0.929 0.610 0.506 3.061 0.141 0.493 0.061 0.625 264 chr10 23477423 23491150 + 0 NA Intergenic CpG 2826 NM_178161 256297 Hs.351503 NM_178161 ENSG00000168267 PTF1A PACA|PAGEN2|PTF1-p48|bHLHa29 pancreas specific transcription factor, 1a protein-coding 0.348 0.461 0.468 0.065 5.504 3.131 0.103 0.125 0.153 0.080 0.095 0.061 0.258 0.064 0.060 0.195 0.092 0.093 0.172 1.253 0.972 0.150 0.093 0.104 0.069 0.095 0.169 0.101 0.140 0.159 0.097 0.040 0.067 0.025 0.040 0.084 0.120 0.138 0.152 0.161 0.503 0.014 0.011 0.103 0.061 0.044 0.007 0.027 254 chr10 3891564 4015841 + 0 NA Intergenic Intergenic 77560 NR_134490 105376365 Hs.460114 NR_134490 ENSG00000230573 LOC105376365 - uncharacterized LOC105376365 ncRNA 0.475 0.980 0.631 0.250 0.591 0.361 0.512 0.952 0.217 0.222 0.104 0.374 0.489 5.211 0.182 0.382 0.302 0.435 0.829 0.307 0.298 1.897 1.168 0.137 0.138 0.138 0.244 0.532 0.711 0.178 0.092 0.190 0.240 0.199 0.360 0.183 0.370 0.593 0.442 0.014 0.124 0.025 0.023 0.512 0.374 0.027 0.063 0.082 0.084 696 chr16 28920624 28937965 + 0 NA intron (NM_024816, intron 3 of 12) MIRb|SINE|MIR 7238 NM_024816 79874 Hs.555978 NM_024816 ENSG00000177548 RABEP2 FRA rabaptin, RAB GTPase binding effector protein 2 protein-coding 1.539 1.158 nan 1.826 1.537 0.786 0.609 0.421 0.110 0.548 0.300 1.088 3.533 0.796 0.097 1.159 1.496 1.301 1.753 1.689 1.335 nan 1.403 3.135 3.240 0.813 0.985 6.028 6.961 1.331 1.371 0.925 1.489 0.976 0.745 1.514 3.252 1.114 0.702 1.814 0.788 0.147 0.403 0.609 1.088 0.454 0.800 0.799 0.486 1161 chr20 44598490 44603202 + 0 NA promoter-TSS (NM_022095) promoter-TSS (NM_022095) -13 NM_022095 63925 Hs.174193 NM_022095 ENSG00000198026 ZNF335 MCPH10|NIF-1|NIF1|NIF2 zinc finger protein 335 protein-coding nan nan 3.372 5.660 5.713 3.422 5.156 3.850 0.379 1.975 0.977 4.266 8.453 5.175 0.128 11.491 10.483 6.250 9.196 7.369 8.799 12.505 9.798 11.288 12.414 4.854 5.553 7.962 11.289 nan 9.023 8.886 10.200 3.983 5.057 7.935 6.360 2.038 1.204 2.159 4.142 0.789 3.339 5.156 4.266 1.532 2.057 2.266 2.782 1342 chr4 77405290 77547928 + 0 NA intron (NM_020859, intron 1 of 10) intron (NM_020859, intron 1 of 10) -18112 NR_039654 100616299 NR_039654 ENSG00000263445 MIR4450 mir-4450 microRNA 4450 ncRNA 0.679 0.656 0.564 0.315 0.692 0.412 0.189 0.440 0.123 0.155 0.134 0.477 0.435 3.711 0.151 0.314 0.184 0.536 1.969 0.328 0.411 1.119 0.405 0.303 0.307 0.157 0.255 1.040 1.096 0.380 0.225 0.144 0.194 0.184 0.167 0.122 0.245 0.662 0.498 0.058 0.169 0.025 0.082 0.189 0.477 0.014 0.132 0.060 0.055 230 chr1 232145608 232152620 + 0 NA intron (NM_001164537, intron 12 of 13) intron (NM_001164537, intron 12 of 13) 87534 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 1.237 2.014 1.849 1.317 1.002 0.646 0.725 0.182 0.088 1.653 0.539 0.409 1.354 0.062 0.111 0.314 0.323 1.142 1.192 1.432 1.187 10.065 2.429 0.306 0.329 0.596 0.847 nan 1.557 0.466 0.228 0.196 0.144 1.235 1.329 0.488 1.065 nan 1.504 1.732 0.482 0.327 0.225 0.725 0.409 0.097 1.951 0.056 0.265 1388 chr5 50665802 50696682 + 0 NA intron (NM_002202, intron 2 of 5) intron (NM_002202, intron 2 of 5) -2076 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA nan nan 0.640 0.800 2.945 1.577 1.765 0.068 0.052 1.797 1.185 4.714 3.747 0.669 0.123 0.133 0.093 6.087 6.879 20.274 19.857 nan 0.704 0.057 0.041 0.163 0.239 0.434 0.673 nan 1.940 0.055 0.071 6.979 5.346 0.195 0.315 1.677 1.031 3.917 4.556 2.144 1.242 1.765 4.714 0.136 0.128 0.013 0.087 9 chr1 3081027 3091074 + 0 NA intron (NM_199454, intron 1 of 16) MIR|SINE|MIR 41511 NR_036215 100422968 NR_036215 ENSG00000283572 MIR4251 - microRNA 4251 ncRNA 1.606 nan 0.955 0.071 1.972 1.051 0.369 0.090 0.016 0.031 0.065 0.072 0.509 0.113 0.073 0.155 0.092 0.119 0.179 0.294 0.317 0.059 0.054 0.170 0.218 1.295 nan nan 0.136 nan 0.123 0.180 0.191 0.033 0.071 0.079 0.095 0.154 0.168 9.298 0.063 0.019 0.007 0.369 0.072 0.745 0.333 0.148 0.025 1351 chr4 129730367 129735019 + 0 NA promoter-TSS (NM_001287443) promoter-TSS (NM_001287443) 268 NM_001287442 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 7.969 8.653 nan 10.295 7.587 3.873 4.530 4.811 0.757 2.764 1.091 8.332 12.358 5.960 0.135 3.640 3.899 6.244 9.762 9.967 6.278 5.332 2.249 9.041 9.157 3.728 4.596 6.838 12.488 9.737 14.038 1.222 4.351 6.211 4.536 9.258 7.640 2.119 1.358 5.536 5.042 1.476 7.470 4.530 8.332 0.942 3.203 1.911 3.560 320 chr11 26606043 26622849 + 0 NA intron (NM_031418, intron 14 of 26) HERV17-int|LTR|ERV1 -20631 NM_145650 143662 Hs.407152 NM_145650 ENSG00000169550 MUC15 MUC-15|PAS3|PASIII mucin 15, cell surface associated protein-coding 0.609 1.100 0.709 0.163 0.170 0.095 0.199 0.062 0.106 0.196 0.086 0.385 0.469 0.052 0.067 0.563 0.377 0.212 0.411 0.246 0.300 7.906 5.669 0.264 0.272 0.295 0.446 2.986 4.410 0.400 0.225 0.114 0.193 0.434 0.606 0.253 0.404 3.330 2.105 0.038 0.148 0.078 0.033 0.199 0.385 0.487 0.024 0.047 0.119 1649 chr8 61589706 61595439 + 0 NA intron (NM_017780, intron 1 of 37) CpG 1248 NM_017780 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 12.127 2.635 9.378 7.443 6.409 3.551 5.130 0.066 2.940 1.455 10.499 9.424 3.614 0.062 2.890 4.278 2.994 3.783 17.849 13.990 6.758 2.272 2.197 1.944 3.754 nan 5.425 8.392 nan 13.910 1.739 6.915 10.140 10.132 9.317 6.376 4.489 2.607 2.715 5.743 2.912 4.223 5.130 10.499 1.005 6.923 1.605 3.111 778 chr17 38374519 38402516 + 0 NA intron (NM_133264, intron 1 of 7) AluSz|SINE|Alu 12943 NM_133264 147179 Hs.421622 NM_133264 ENSG00000171475 WIPF2 WICH|WIRE WAS/WASL interacting protein family member 2 protein-coding nan 1.472 1.252 0.323 0.992 0.461 0.625 0.608 0.244 0.387 0.351 0.444 1.615 0.391 0.092 0.778 0.943 0.727 1.138 nan 0.959 1.508 1.220 1.801 1.936 0.971 1.508 1.143 1.740 nan 0.744 0.459 0.701 0.493 0.577 1.792 3.335 0.718 0.613 0.469 0.560 0.099 0.297 0.625 0.444 0.252 0.276 0.176 0.911 1012 chr2 16023140 16038093 + 0 NA Intergenic MER5A1|DNA|hAT-Charlie -29905 NR_125783 103752554 Hs.269571 NR_125783 ENSG00000223850 MYCNUT MYCNUN|lncUSMycN MYCN upstream transcript (non-protein coding) ncRNA 0.625 0.529 0.875 0.298 0.146 0.107 0.086 0.076 0.065 0.084 0.105 0.072 0.487 0.044 0.117 0.405 0.510 0.447 1.751 0.280 0.327 0.152 0.092 0.158 0.201 0.179 0.291 0.267 nan 0.646 0.610 23.261 31.859 0.023 0.060 0.462 nan 0.146 0.236 0.072 0.149 0.013 0.027 0.086 0.072 0.078 0.055 18.912 0.057 31 chr1 8927744 8966353 + 0 NA Intergenic AluJr|SINE|Alu -7897 NM_001428 2023 Hs.517145 NM_001428 ENSG00000074800 ENO1 ENO1L1|HEL-S-17|MPB1|NNE|PPH enolase 1 protein-coding 2.077 nan 1.945 2.994 1.391 0.811 1.317 1.836 0.670 0.650 0.496 0.376 1.831 0.776 0.120 1.085 1.405 1.674 4.193 2.748 2.399 0.954 0.362 2.658 2.742 2.230 nan nan 5.887 nan 2.988 0.913 1.746 0.814 0.790 1.829 1.864 1.002 0.724 0.855 0.898 0.183 0.538 1.317 0.376 0.306 1.007 0.600 0.904 4 chr1 1163899 1174885 + 0 NA 3' UTR (NM_080605, exon 1 of 1) 3' UTR (NM_080605, exon 1 of 1) 1763 NM_080605 126792 Hs.284284 NM_080605 ENSG00000176022 B3GALT6 EDSP2|SEMDJL1|beta3GalT6 beta-1,3-galactosyltransferase 6 protein-coding 2.114 nan 2.179 2.375 1.115 0.699 0.782 0.863 0.191 0.707 0.263 0.731 2.037 1.372 0.094 3.256 4.496 1.644 2.804 3.181 3.133 1.379 0.627 6.189 6.240 1.835 nan nan 12.768 nan 1.409 2.112 3.409 0.921 0.894 1.769 1.442 1.268 0.759 1.165 1.353 0.086 5.197 0.782 0.731 0.419 0.835 0.686 0.573 616 chr14 95973290 95992817 + 0 NA Intergenic CpG 16913 NR_003002 677768 Hs.448753 NR_003002 ENSG00000252481 SCARNA13 U93 small Cajal body-specific RNA 13 ncRNA 1.325 1.142 nan 2.743 1.952 1.135 1.265 1.574 0.096 0.237 0.205 2.724 5.900 0.229 0.093 1.657 2.159 0.249 0.307 2.617 2.857 1.360 0.383 0.814 0.710 0.355 0.890 1.589 1.562 0.705 0.453 2.684 3.312 0.364 0.436 0.284 0.515 nan 0.574 3.785 1.478 0.087 0.256 1.265 2.724 0.234 0.031 2.609 0.032 674 chr15 96864329 96907900 + 0 NA Intergenic Intergenic 9545 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP1|CHTD4|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding nan nan nan 0.568 0.801 0.395 1.250 1.058 0.133 0.953 0.720 2.326 2.704 1.151 0.071 1.412 1.556 5.140 6.193 2.190 1.973 nan 0.067 1.538 1.585 1.312 1.793 0.877 1.076 nan 2.822 1.307 2.710 0.517 0.403 1.302 nan 1.049 0.657 0.329 1.512 0.138 1.104 1.250 2.326 0.197 0.399 0.739 0.236 112 chr1 109674726 109683886 + 0 NA intron (NM_001284352, intron 1 of 20) intron (NM_001284352, intron 1 of 20) 22721 NM_001267048 57535 Hs.708190 NM_020775 ENSG00000116299 KIAA1324 EIG121 KIAA1324 protein-coding 1.214 nan nan 1.477 0.654 0.380 0.442 0.442 0.072 0.496 0.161 1.589 0.568 0.144 0.129 0.463 0.568 0.243 0.355 1.379 nan 8.812 2.772 0.424 0.438 2.094 2.493 nan nan 0.378 0.268 1.021 1.028 0.436 0.496 0.498 nan 1.985 0.939 0.383 0.668 0.051 0.078 0.442 1.589 0.185 0.101 1.038 0.175 973 chr19 47606293 47635808 + 0 NA Intergenic AluSx3|SINE|Alu -4041 NM_015168 23211 Hs.104661 NM_015168 ENSG00000130749 ZC3H4 C19orf7 zinc finger CCCH-type containing 4 protein-coding 3.799 2.330 3.022 2.067 2.959 1.511 2.650 1.726 0.424 1.680 0.742 3.241 3.414 2.739 0.179 3.383 3.021 3.601 4.817 5.237 5.119 5.225 3.310 9.343 10.386 3.153 4.112 3.979 6.126 3.536 3.211 4.423 5.918 3.123 3.774 4.192 4.827 2.525 1.259 3.037 3.973 0.818 1.263 2.650 3.241 0.902 1.232 3.821 1.703 759 chr17 29032687 29040880 + 0 NA non-coding (NR_024187, exon 1 of 8) non-coding (NR_024187, exon 1 of 8) 157 NR_144395 440423 Hs.628886 NR_024187 SUZ12P1 SUZ12P SUZ12 polycomb repressive complex 2 subunit pseudogene 1 pseudo nan nan nan 1.767 4.576 2.853 4.304 1.801 0.409 1.582 0.876 5.705 7.102 3.825 0.130 4.191 5.587 2.407 4.126 6.937 6.409 4.643 1.864 3.544 3.789 2.167 3.115 5.188 7.830 7.239 8.720 4.453 9.261 4.420 3.900 6.061 nan 2.243 1.179 4.315 4.140 1.843 3.656 4.304 5.705 1.244 1.674 3.517 3.534 1283 chr3 128199824 128217340 + 0 NA intron (NR_125398, intron 1 of 2) CpG-18893 536 NR_125398 101927167 Hs.287582 NR_125398 GATA2-AS1 - GATA2 antisense RNA 1 ncRNA 2.973 nan 1.756 0.838 0.812 0.314 0.827 1.486 0.260 0.744 0.302 1.401 1.104 0.990 0.064 2.412 2.220 3.141 4.119 2.074 1.426 3.790 1.093 1.044 1.123 1.689 nan 1.172 2.038 1.499 1.083 3.971 8.553 1.163 1.072 0.336 0.476 1.022 0.678 1.139 0.609 0.218 1.874 0.827 1.401 1.069 1.242 3.080 0.057 478 chr12 54729820 54763208 + 0 NA promoter-TSS (NR_120486) promoter-TSS (NR_120486) -961 NR_120486 102724050 Hs.670941 NR_120486 ENSG00000258137 LOC102724050 - uncharacterized LOC102724050 ncRNA nan 1.369 1.195 0.847 0.954 0.520 3.900 0.638 0.193 1.310 0.695 1.583 2.854 0.483 0.093 nan 2.957 0.865 1.420 4.178 nan 3.081 1.474 1.087 1.295 1.072 nan 2.615 nan 1.462 1.010 0.690 1.152 2.848 2.597 1.787 4.670 2.963 1.623 1.271 3.372 1.310 0.256 3.900 1.583 0.445 0.850 0.685 1.331 794 chr17 45958341 45975269 + 0 NA Intergenic AluJo|SINE|Alu 6377 NR_135480 102724532 Hs.729067 NR_135480 ENSG00000264920 LOC102724532 - uncharacterized LOC102724532 ncRNA 1.671 1.748 nan 1.810 2.395 1.130 1.105 0.983 0.267 0.788 0.413 1.518 3.266 1.178 0.119 1.738 1.955 1.898 2.817 2.421 nan 2.485 1.370 3.826 4.171 0.989 1.567 3.482 nan 2.797 2.388 1.417 2.135 1.667 2.097 1.926 2.442 2.168 0.943 3.883 1.083 0.377 0.739 1.105 1.518 0.559 0.904 0.542 0.681 288 chr10 131659291 131689009 + 0 NA intron (NM_001005463, intron 7 of 15) intron (NM_001005463, intron 7 of 15) -32512 NR_036179 100422873 NR_036179 ENSG00000266676 MIR4297 - microRNA 4297 ncRNA 1.108 0.669 1.907 0.042 4.283 2.649 0.604 0.066 0.060 0.116 0.061 1.388 0.432 0.036 0.088 1.998 2.734 0.119 0.184 1.096 0.926 0.056 0.036 0.383 0.391 0.584 0.836 0.113 0.127 0.644 0.953 0.663 1.058 0.946 0.710 1.769 2.668 1.567 0.867 0.127 0.069 0.388 2.111 0.604 1.388 0.588 0.038 1.034 0.506 1177 chr20 57635563 57642225 + 0 NA Intergenic Intergenic -20993 NM_001256403 51012 Hs.656865 NM_016045 ENSG00000101166 PRELID3B C20orf45|SLMO2|dJ543J19.5 PRELI domain containing 3B protein-coding 1.269 1.388 0.800 0.145 0.565 0.123 0.331 0.121 0.141 0.332 0.294 0.215 0.654 3.977 0.195 0.576 nan 0.126 0.129 0.471 0.557 6.404 1.296 0.197 0.132 0.772 1.115 0.134 0.202 2.430 2.327 0.203 0.199 6.008 7.967 0.364 0.626 3.568 1.325 0.110 0.176 1.879 0.024 0.331 0.215 0.250 4.005 0.050 0.036 1622 chr7 155246692 155266245 + 0 NA 3' UTR (NM_001427, exon 2 of 2) 3' UTR (NM_001427, exon 2 of 2) 5644 NM_001427 2020 Hs.134989 NM_001427 ENSG00000164778 EN2 - engrailed homeobox 2 protein-coding 0.462 0.454 nan 0.127 0.189 0.149 1.050 0.077 0.057 0.135 0.143 0.122 0.557 1.140 0.099 4.385 4.525 1.988 1.886 1.187 1.002 0.189 0.061 0.110 0.102 0.141 0.222 0.128 0.155 0.361 0.239 4.090 7.321 0.097 0.131 0.063 0.161 0.452 0.457 1.329 0.327 0.005 0.057 1.050 0.122 0.229 0.015 3.226 0.025 147 chr1 156456717 156479219 + 0 NA intron (NM_005920, intron 1 of 11) intron (NM_005920, intron 1 of 11) 2666 NM_005920 4209 Hs.314327 NM_005920 ENSG00000116604 MEF2D - myocyte enhancer factor 2D protein-coding nan nan 4.087 1.229 1.917 0.897 2.098 2.865 0.406 1.918 1.033 1.729 8.135 2.286 0.114 3.739 5.136 3.801 5.147 3.324 nan 2.925 1.471 1.781 1.744 2.729 3.455 6.198 6.169 3.877 3.420 3.342 5.666 1.795 1.650 3.460 9.556 1.818 1.129 0.651 2.905 0.488 0.981 2.098 1.729 0.978 4.631 3.954 2.792 1091 chr2 198360091 198373053 + 0 NA intron (NM_001202485, intron 2 of 8) intron (NM_001202485, intron 2 of 8) -1574 NM_199440 3329 Hs.595053 NM_002156 ENSG00000144381 HSPD1 CPN60|GROEL|HLD4|HSP-60|HSP60|HSP65|HuCHA60|SPG13 heat shock protein family D (Hsp60) member 1 protein-coding 2.799 nan 2.201 2.967 4.632 2.469 1.793 0.864 0.199 1.081 0.894 2.244 7.052 1.526 0.123 1.792 2.585 2.275 3.606 3.153 3.319 2.899 1.588 7.497 7.236 2.211 2.558 3.914 5.318 5.308 5.887 3.445 8.101 2.092 2.010 5.397 6.375 1.475 0.710 1.458 1.481 0.442 1.615 1.793 2.244 0.772 1.388 1.230 4.128 1767 chr9 135416524 135425440 + 0 NA intron (NM_207417, intron 6 of 6) intron (NM_207417, intron 6 of 6) -37011 NM_020064 56751 Hs.283809 NM_020064 ENSG00000125492 BARHL1 - BarH like homeobox 1 protein-coding nan 0.690 1.286 0.806 0.598 0.215 1.484 0.093 0.054 0.352 0.283 0.831 1.001 0.049 0.083 1.227 1.882 0.371 0.557 1.743 1.596 nan 0.095 0.281 0.338 0.790 0.896 0.687 1.235 1.562 1.513 0.910 0.919 6.455 6.060 0.903 1.625 1.428 0.836 0.275 0.109 1.880 1.477 1.484 0.831 0.980 0.172 0.999 0.264 996 chr19 56109576 56118392 + 0 NA exon (NM_153219, exon 2 of 2) exon (NM_153219, exon 2 of 2) 2278 NM_153219 147807 Hs.440291 NM_153219 ENSG00000171443 ZNF524 - zinc finger protein 524 protein-coding 4.673 3.068 5.173 4.706 9.269 4.708 5.031 2.801 0.403 2.004 0.787 5.218 8.346 5.635 0.207 7.984 7.557 4.733 6.235 8.912 8.412 8.671 6.144 6.534 7.192 3.954 5.196 7.599 11.505 8.740 7.268 4.614 5.210 5.473 5.834 5.371 6.370 4.253 1.903 5.239 6.233 1.380 3.535 5.031 5.218 1.684 2.484 2.823 2.855 23 chr1 7425599 7451916 + 0 NA intron (NM_015215, intron 5 of 22) L1MB5|LINE|L1 -392572 NM_004781 9341 Hs.66708 NM_004781 ENSG00000049245 VAMP3 CEB vesicle associated membrane protein 3 protein-coding 1.019 nan 0.944 2.572 1.130 0.627 0.727 0.148 0.067 0.426 0.212 0.900 5.662 0.057 0.096 0.580 0.760 0.172 0.329 1.758 1.845 1.486 0.471 0.237 0.212 0.285 nan nan 4.577 nan 0.343 1.484 1.783 0.490 0.594 0.372 0.619 1.241 0.815 5.220 1.622 0.116 0.154 0.727 0.900 0.315 0.964 0.840 0.137 1760 chr9 130061723 130076208 + 0 NA intron (NM_032293, intron 2 of 27) AluY|SINE|Alu 42209 NR_104591 84253 Hs.29304 NM_032293 ENSG00000136895 GARNL3 bA356B19.1 GTPase activating Rap/RanGAP domain like 3 protein-coding nan 1.058 0.993 0.327 0.379 0.176 0.131 0.342 0.146 0.075 0.098 0.373 0.983 0.045 0.074 0.251 0.175 0.256 0.472 0.552 0.741 nan 0.195 0.328 0.367 0.727 1.107 1.605 1.707 6.682 5.540 0.154 0.196 0.158 0.181 2.528 4.800 0.744 0.575 0.091 0.098 0.040 0.093 0.131 0.373 0.732 0.358 0.034 1.704 1356 chr4 185296310 185325772 + 0 NA intron (NM_002199, intron 8 of 8) intron (NM_002199, intron 8 of 8) -7581 NR_125933 102723766 Hs.432281 NR_125933 ENSG00000249096 LOC102723766 - uncharacterized LOC102723766 ncRNA nan 1.033 nan 0.178 0.304 0.190 1.594 1.379 0.104 0.144 0.085 0.679 0.996 0.037 0.064 0.735 0.614 4.249 5.811 1.116 1.026 0.533 0.106 0.203 0.206 0.071 0.142 0.845 0.992 0.307 0.178 1.247 1.649 0.334 0.490 0.149 0.257 0.599 0.491 0.531 1.423 0.052 0.318 1.594 0.679 0.049 0.097 1.415 0.101 615 chr14 89874947 89899304 + 0 NA TTS (NR_036500) TTS (NR_036500) 3427 NR_036500 400236 Hs.585207 NR_036500 ENSG00000258920 FOXN3-AS1 - FOXN3 antisense RNA 1 ncRNA 3.865 1.746 nan 0.766 1.227 0.601 0.842 3.122 0.324 0.684 0.345 1.238 3.377 1.622 0.121 0.829 1.078 1.656 2.439 2.703 2.133 1.880 0.729 2.042 1.932 1.806 2.879 3.255 4.719 2.111 2.139 0.989 2.542 3.577 3.563 0.687 0.834 nan 1.359 1.580 0.708 1.036 2.239 0.842 1.238 0.292 0.797 2.114 0.135 1777 chr9 139079370 139100723 + 0 NA intron (NM_178138, intron 5 of 5) intron (NM_178138, intron 5 of 5) 4973 NM_014564 8022 Hs.148427 NM_014564 ENSG00000107187 LHX3 CPHD3|LIM3|M2-LHX3 LIM homeobox 3 protein-coding nan 0.737 0.746 0.252 0.464 0.229 0.642 0.087 0.075 0.102 0.054 0.185 0.767 0.139 0.053 0.237 0.290 0.137 0.137 0.555 0.675 nan 0.258 0.051 0.069 0.085 0.225 0.365 0.427 0.940 0.846 0.364 0.309 0.434 0.470 0.733 1.279 0.276 0.253 0.559 0.264 0.099 6.768 0.642 0.185 0.317 0.033 0.065 0.075 1472 chr6 31506258 31511458 + 0 NA promoter-TSS (NR_003065) promoter-TSS (NR_003065) 97 NR_003065 692199 NR_003065 ENSG00000265236 SNORD84 U84 small nucleolar RNA, C/D box 84 snoRNA nan 4.192 5.137 7.528 8.044 5.062 8.399 3.933 0.589 2.889 1.577 8.779 13.279 5.411 0.293 10.781 8.748 10.205 nan nan 12.893 9.847 7.982 15.836 17.029 6.208 7.270 13.771 19.154 12.196 11.255 8.368 12.604 8.565 10.508 8.618 9.174 5.137 2.117 4.844 4.460 1.504 3.974 8.399 8.779 1.645 3.715 3.774 3.739 1069 chr2 145251968 145283091 + 0 NA intron (NM_001171653, intron 2 of 8) intron (NM_001171653, intron 2 of 8) -9652 NR_040248 100303491 Hs.560789 NR_040248 ENSG00000238057 ZEB2-AS1 ZEB2-AS|ZEB2AS|ZEB2NAT ZEB2 antisense RNA 1 ncRNA 1.953 nan 0.901 0.606 2.371 1.072 0.704 2.097 0.181 0.923 0.628 0.566 2.296 0.131 0.059 0.316 0.255 6.663 9.563 2.090 1.405 0.328 0.107 0.233 0.294 3.078 3.524 0.389 0.484 1.697 1.748 0.216 0.467 0.036 0.047 1.728 2.949 0.470 0.345 0.100 0.086 0.015 0.550 0.704 0.566 0.436 0.059 0.181 1.086 273 chr10 71326829 71340701 + 0 NA promoter-TSS (NM_020999) promoter-TSS (NM_020999) -555 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 0.334 nan 11.071 0.102 0.153 0.092 0.139 0.064 0.023 0.057 0.047 0.439 0.573 0.031 0.072 0.226 0.244 0.074 0.096 5.604 5.167 0.170 0.074 0.049 0.032 0.061 0.109 0.230 nan 0.158 0.077 0.091 0.087 0.054 0.080 0.089 nan 0.188 0.197 0.032 0.013 0.021 0.023 0.139 0.439 0.028 0.014 0.021 741 chr17 7727306 7749156 + 0 NA Intergenic CpG -5004 NM_001080424 23135 Hs.223678 NM_001080424 ENSG00000132510 KDM6B JMJD3 lysine demethylase 6B protein-coding 3.952 1.883 2.521 2.050 4.037 1.888 2.302 1.299 0.111 1.142 0.574 2.368 6.240 3.976 0.130 2.847 4.184 2.852 4.778 5.418 4.318 4.506 2.536 4.970 5.481 2.296 3.021 5.638 8.395 1.779 2.443 1.115 1.780 2.490 2.246 4.614 7.601 1.407 0.791 2.643 2.976 0.468 1.372 2.302 2.368 1.149 3.217 1.086 2.291 736 chr17 7151735 7157357 + 0 NA promoter-TSS (NM_203415) promoter-TSS (NM_203415) 449 NM_001143775 23399 Hs.513913 NM_015343 ENSG00000175826 CTDNEP1 DULLARD|HSA011916|NET56 CTD nuclear envelope phosphatase 1 protein-coding 4.924 2.650 3.176 2.890 4.949 2.820 3.732 2.026 0.305 1.846 0.772 4.903 6.415 11.592 0.368 5.507 6.278 4.941 7.330 8.498 7.064 6.270 3.768 7.646 7.922 3.998 4.957 6.243 7.957 3.798 3.708 2.822 4.172 3.119 3.870 6.761 9.873 2.353 1.087 3.879 3.287 0.591 2.119 3.732 4.903 1.622 4.366 1.414 3.469 1773 chr9 136704545 136709965 + 0 NA intron (NM_001134398, intron 3 of 29) intron (NM_001134398, intron 3 of 29) -102178 NM_007101 1757 Hs.198003 NM_007101 ENSG00000123453 SARDH BPR-2|DMGDHL1|SAR|SARD|SDH sarcosine dehydrogenase protein-coding 2.275 0.841 1.310 2.669 1.531 0.770 2.237 0.124 1.247 0.703 1.695 0.896 0.020 0.044 0.242 0.357 0.236 0.321 1.928 2.416 nan 0.312 1.067 0.956 0.241 0.307 2.295 3.526 2.173 2.658 1.497 2.163 2.756 3.339 0.483 0.733 2.378 1.222 0.359 0.593 1.211 2.804 2.237 1.695 3.729 1.211 2.691 0.276 302 chr11 9479999 9485503 + 0 NA promoter-TSS (NR_036539) promoter-TSS (NR_036539) 239 NM_001282656 7702 Hs.523471 NM_003442 ENSG00000166478 ZNF143 SBF|STAF|pHZ-1 zinc finger protein 143 protein-coding 5.343 5.471 5.785 7.211 8.063 4.369 5.840 3.736 0.379 2.817 1.386 10.464 12.042 6.374 0.174 11.879 9.963 9.225 14.572 12.857 13.016 9.733 6.933 18.182 19.401 7.085 8.878 6.337 11.378 10.416 10.189 8.255 11.904 8.290 10.091 9.400 8.713 4.111 2.049 5.979 5.468 1.898 2.521 5.840 10.464 0.996 1.771 4.039 3.078 1077 chr2 172914181 172969334 + 0 NA intron (NM_199227, intron 6 of 9) intron (NM_199227, intron 6 of 9) -8451 NM_001038493 1745 Hs.407015 NM_178120 ENSG00000144355 DLX1 - distal-less homeobox 1 protein-coding 1.373 0.907 1.100 1.060 12.644 6.522 2.280 0.979 0.181 0.534 0.394 0.988 1.770 1.605 0.102 0.316 0.259 0.809 1.536 0.895 0.819 5.067 1.848 0.513 0.530 1.076 1.552 0.966 1.282 1.102 1.073 0.539 0.709 2.145 0.938 0.304 0.597 2.838 1.489 0.190 0.142 0.145 0.036 2.280 0.988 0.301 0.245 0.245 0.100 1149 chr20 25010775 25026625 + 0 NA intron (NM_032501, intron 2 of 13) intron (NM_032501, intron 2 of 13) -5358 NM_001252676 84532 Hs.529353 NM_032501 ENSG00000154930 ACSS1 ACAS2L|ACECS1|AceCS2L acyl-CoA synthetase short-chain family member 1 protein-coding 1.124 2.196 nan 0.138 0.191 0.108 0.219 0.415 0.141 0.099 0.067 0.168 1.080 0.069 0.098 3.871 6.659 3.026 4.838 0.449 0.497 0.758 0.228 0.308 0.346 0.253 0.475 1.779 1.708 1.295 1.179 1.579 1.817 0.195 0.209 0.274 0.377 0.488 0.491 0.562 0.067 0.042 0.040 0.219 0.168 0.195 0.090 0.676 0.141 711 chr16 54959715 54966556 + 0 NA promoter-TSS (NM_001308963) promoter-TSS (NM_001308963) -34 NR_034105 643911 Hs.237396 NM_001308963 CRNDE CRNDEP|LINC00180|NCRNA00180|PNAS-108|lincIRX5 colorectal neoplasia differentially expressed (non-protein coding) protein-coding 6.624 nan 6.821 6.110 2.623 1.431 7.502 1.985 0.140 0.272 0.059 4.236 12.761 2.804 0.073 1.735 1.831 1.458 1.788 8.238 4.999 7.593 3.553 8.011 7.340 1.877 nan nan nan nan 1.416 0.428 0.497 2.004 2.281 0.805 nan nan 1.079 3.381 2.504 0.485 3.357 7.502 4.236 0.866 2.349 0.158 0.054 333 chr11 45115956 45124852 + 0 NA intron (NR_046338, intron 2 of 7) L2c|LINE|L2 4840 NR_046338 56981 Hs.178715 NM_020229 ENSG00000019485 PRDM11 PFM8 PR/SET domain 11 protein-coding nan 1.190 0.833 0.207 0.791 0.377 0.816 0.118 0.036 0.309 0.207 0.210 0.922 0.075 0.134 0.870 1.450 0.240 0.243 0.768 0.795 1.797 0.432 0.083 0.174 1.495 1.864 0.177 0.211 2.304 1.762 0.447 0.384 0.211 0.279 0.300 nan 1.776 0.936 0.443 0.289 0.054 0.027 0.816 0.210 2.427 0.099 0.078 0.055 338 chr11 47125073 47160584 + 0 NA intron (NM_001003678, intron 3 of 8) Tigger15a|DNA|TcMar-Tigger 55848 NM_032389 84364 Hs.436204 NM_032389 ENSG00000149182 ARFGAP2 IRZ|NBLA10535|ZFP289|ZNF289 ADP ribosylation factor GTPase activating protein 2 protein-coding nan 1.925 1.054 1.281 1.744 0.963 0.524 0.139 0.104 0.195 0.224 1.254 0.947 0.073 0.125 0.666 0.744 0.690 0.687 1.036 1.057 4.060 1.179 0.373 0.416 0.614 0.901 1.272 1.560 0.298 0.190 1.044 1.595 1.069 1.119 0.371 nan 1.682 0.960 1.122 2.715 0.507 0.101 0.524 1.254 0.036 0.371 2.000 0.269 1227 chr22 35758038 35781438 + 0 NA Intergenic AluSp|SINE|Alu -7322 NM_002133 3162 Hs.517581 NM_002133 ENSG00000100292 HMOX1 HMOX1D|HO-1|HSP32|bK286B10 heme oxygenase 1 protein-coding nan 1.049 1.094 0.226 0.669 0.397 0.777 0.704 0.282 0.141 0.113 0.460 0.669 0.815 0.114 1.008 1.301 0.996 nan 0.500 0.541 3.373 0.354 0.862 0.859 0.873 nan 0.837 1.344 2.235 1.527 0.406 0.330 0.914 4.624 1.117 nan 0.778 0.502 0.241 0.201 0.062 0.129 0.777 0.460 0.257 0.903 0.152 0.514 1576 chr7 44884890 44896941 + 0 NA Intergenic Intergenic -3190 NM_012412 94239 Hs.488189 NM_012412 ENSG00000105968 H2AFV H2A.Z-2|H2AV H2A histone family member V protein-coding 3.967 3.286 nan 2.381 2.911 1.393 2.257 1.702 0.362 1.686 0.881 2.355 5.962 2.631 0.204 3.991 4.020 2.580 3.590 5.359 5.136 4.376 2.675 4.029 4.213 2.864 3.393 3.469 5.716 3.757 4.059 2.365 3.511 4.336 4.860 4.112 3.605 1.978 1.232 3.397 2.289 0.771 1.609 2.257 2.355 0.522 1.551 0.819 1.161 542 chr13 74092353 74103051 + 0 NA Intergenic Intergenic -40679 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA nan 1.717 0.585 0.107 0.413 0.165 0.349 0.119 0.089 0.044 0.031 0.141 2.608 0.050 0.059 0.550 0.350 0.263 0.413 0.590 0.589 nan 0.175 0.087 0.133 0.058 0.078 0.269 0.374 nan 0.160 0.246 0.387 0.059 0.109 0.350 nan 0.180 0.175 0.488 4.918 0.127 0.349 0.141 0.009 0.057 0.055 0.023 548 chr13 98923778 98950590 + 0 NA intron (NM_005766, intron 2 of 26) intron (NM_005766, intron 2 of 26) 76406 NR_036129 100422881 NR_036129 ENSG00000263399 MIR3170 mir-3170 microRNA 3170 ncRNA 1.492 1.691 1.497 1.299 2.446 1.364 3.059 0.097 0.109 0.721 0.406 2.404 0.772 0.061 0.083 1.539 1.768 0.397 0.799 2.566 2.207 5.514 1.973 0.170 0.164 0.470 0.535 2.344 2.669 1.088 0.772 1.311 1.766 2.876 3.450 1.455 3.113 0.718 0.417 1.135 2.433 0.632 1.374 3.059 2.404 0.670 1.326 0.791 0.808 328 chr11 34633585 34691623 + 0 NA intron (NM_001206616, intron 1 of 8) MIRb|SINE|MIR 8593 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 0.616 1.368 nan 0.492 1.108 0.580 0.510 0.200 0.077 0.464 0.270 3.412 3.097 0.049 0.114 1.798 2.658 8.154 9.791 0.587 0.843 3.193 1.089 0.657 0.635 0.247 0.390 0.659 0.616 0.241 0.120 1.339 2.648 0.318 0.347 0.140 nan 0.564 0.563 1.067 0.238 0.129 0.044 0.510 3.412 0.028 0.203 1.611 0.141 1146 chr20 23329811 23347600 + 0 NA promoter-TSS (NR_109884) promoter-TSS (NR_109884) 59 NR_109884 100505683 Hs.140295 NR_109884 ENSG00000232645 LINC01431 - long intergenic non-protein coding RNA 1431 ncRNA 3.638 3.803 nan 3.828 2.044 1.134 2.131 2.601 0.271 1.258 0.581 2.254 5.334 1.644 0.090 4.157 4.289 2.590 4.321 3.847 2.840 5.402 2.294 5.281 5.216 2.287 2.879 5.295 7.525 4.676 5.272 2.029 3.659 3.645 3.955 3.112 3.592 2.279 1.434 1.560 1.543 0.504 0.625 2.131 2.254 0.974 2.278 1.522 1.058 5 chr1 1180610 1210576 + 0 NA intron (NM_194457, intron 2 of 5) intron (NM_194457, intron 2 of 5) -13491 NM_001014980 388581 Hs.197613 NM_001014980 ENSG00000184163 FAM132A C1QDC2|C1QTNF12|CTRP12 family with sequence similarity 132 member A protein-coding 1.278 nan 1.743 1.614 0.700 0.379 0.403 0.460 0.193 0.382 0.280 0.408 1.551 0.659 0.117 0.868 1.143 0.876 1.468 2.400 2.515 0.948 0.292 3.065 2.992 0.935 nan nan 6.867 nan 0.767 0.761 1.148 0.299 0.424 0.839 1.107 0.713 0.513 0.436 0.749 0.067 0.783 0.403 0.408 0.313 0.403 0.235 0.297 1396 chr5 57071257 57087859 + 0 NA Intergenic Intergenic 115431 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LOC101928539 - uncharacterized LOC101928539 ncRNA nan nan 0.732 0.049 0.229 0.174 0.184 1.042 0.171 0.057 0.094 0.029 0.392 4.338 0.183 0.205 0.117 0.606 2.314 0.136 0.210 nan 0.092 0.127 0.169 0.313 0.423 0.170 0.186 nan 0.171 0.060 0.129 0.101 0.145 0.409 1.094 0.310 0.441 0.023 0.102 0.006 0.043 0.184 0.029 0.035 0.018 0.018 0.430 1742 chr9 86588874 86611180 + 0 NA intron (NM_024945, intron 1 of 2) intron (NM_024945, intron 1 of 2) -4330 NM_031262 3190 Hs.522257 NM_002140 ENSG00000165119 HNRNPK AUKS|CSBP|HNRPK|TUNP heterogeneous nuclear ribonucleoprotein K protein-coding 2.677 2.004 2.638 3.219 6.949 3.917 1.853 1.359 0.195 1.685 0.872 4.034 3.011 1.162 0.092 2.235 1.828 3.388 4.218 4.902 5.083 2.483 1.479 4.028 4.279 1.562 1.975 4.185 6.364 2.188 2.321 1.657 2.926 3.777 4.776 3.370 2.506 2.032 1.132 0.990 1.127 0.763 0.996 1.853 4.034 0.660 0.833 0.578 0.704 1011 chr2 9893336 9914654 + 0 NA Intergenic Intergenic -79576 NM_005680 9014 Hs.584833 NM_005680 ENSG00000115750 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA-box binding protein associated factor, RNA polymerase I subunit B protein-coding 1.196 1.149 1.012 0.400 0.286 0.263 1.593 0.115 0.084 0.737 0.254 0.624 0.704 0.068 0.093 0.667 1.019 0.338 0.477 1.255 1.156 1.990 0.566 0.233 0.258 0.214 0.503 2.387 2.414 0.722 0.488 0.418 0.540 0.605 0.463 0.442 0.740 1.708 1.181 1.759 4.998 0.111 0.246 1.593 0.624 0.279 0.591 0.137 0.235 1048 chr2 85959433 86027026 + 0 NA intron (NM_032827, intron 2 of 2) MIR|SINE|MIR 12320 NM_032827 84913 Hs.135569 NM_032827 ENSG00000168874 ATOH8 HATH6|bHLHa21 atonal bHLH transcription factor 8 protein-coding nan 0.712 nan 0.250 0.470 0.201 0.871 0.912 0.149 0.155 0.167 1.029 1.725 0.114 0.105 0.770 1.306 0.694 2.421 1.953 1.483 0.699 0.188 0.488 0.581 2.941 3.999 1.045 0.773 1.801 1.980 0.329 0.340 0.376 0.466 1.136 2.877 2.016 1.168 2.766 0.249 0.126 0.098 0.871 1.029 1.027 0.510 0.060 0.889 1669 chr8 103657981 103671281 + 0 NA intron (NM_005655, intron 1 of 3) intron (NM_005655, intron 1 of 3) 1561 NR_103760 7071 Hs.435001 NM_005655 ENSG00000155090 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel like factor 10 protein-coding 5.256 nan nan 4.526 4.211 2.377 2.358 2.380 0.190 0.862 0.658 3.472 13.367 2.801 0.113 1.749 2.941 2.571 3.374 9.517 7.395 nan 1.708 5.892 5.466 1.827 nan 8.946 nan nan 4.278 1.793 3.804 2.958 2.337 2.719 nan 2.030 1.084 3.770 3.424 1.191 2.237 2.358 3.472 0.379 4.217 2.031 1.069 1399 chr5 59775458 59794620 + 0 NA intron (NR_024617, intron 1 of 3) intron (NR_024617, intron 1 of 3) -1114 NM_001165899 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding nan nan 0.857 0.070 0.163 0.147 0.148 0.106 0.092 0.098 0.089 0.169 0.311 0.051 0.099 0.218 0.151 0.397 0.599 0.295 0.356 nan 0.107 0.162 0.147 3.537 4.117 0.529 0.665 nan 0.117 0.074 0.240 0.088 0.127 0.189 0.338 0.199 0.286 0.655 0.092 0.030 0.141 0.148 0.169 0.005 0.312 0.077 0.078 676 chr16 277875 286550 + 0 NA Intergenic AluYc|SINE|Alu -2333 NR_104317 83986 Hs.513225 NM_032039 ENSG00000167930 FAM234A C16orf9|ITFG3|gs19 family with sequence similarity 234 member A protein-coding 3.349 nan 2.247 4.218 3.654 1.938 3.097 1.508 0.467 1.513 0.679 3.150 7.675 2.584 0.069 4.250 3.736 1.975 3.315 4.804 4.430 nan 4.850 7.559 8.456 2.912 nan 4.557 7.153 4.380 4.293 1.519 2.540 4.699 4.544 3.900 3.588 2.883 1.669 2.320 4.692 0.691 1.182 3.097 3.150 1.062 2.167 0.647 0.871 1 chr1 933631 938358 + 0 NA promoter-TSS (NM_021170) promoter-TSS (NM_021170) -442 NM_001142467 57801 Hs.154029 NM_021170 ENSG00000188290 HES4 bHLHb42 hes family bHLH transcription factor 4 protein-coding 8.138 nan 11.693 3.582 2.516 1.529 2.751 5.584 0.729 0.711 0.104 0.197 8.566 11.414 0.185 5.246 7.143 9.759 16.993 1.883 1.049 3.137 2.028 7.221 7.353 6.115 nan nan 15.409 nan 1.592 2.869 2.837 3.217 2.550 0.565 1.285 0.353 0.310 7.435 1.127 0.507 30.773 2.751 0.197 2.317 0.278 0.707 0.441 1188 chr20 62723205 62734923 + 0 NA intron (NM_001318855, intron 1 of 2) intron (NM_001318855, intron 1 of 2) 5023 NM_001318855 4987 Hs.2859 NM_000913 ENSG00000125510 OPRL1 KOR-3|NOCIR|NOP|NOPr|OOR|ORL1 opioid related nociceptin receptor 1 protein-coding 1.574 1.105 2.024 0.262 4.254 1.949 0.427 0.096 0.041 0.442 0.315 2.099 1.422 0.692 0.065 1.947 nan 0.283 0.334 3.220 2.550 1.134 0.402 0.568 0.735 0.561 1.020 0.290 0.440 0.774 0.842 0.703 0.766 0.602 0.304 0.739 0.872 2.978 1.946 1.820 0.754 0.074 0.263 0.427 2.099 0.566 3.574 0.237 0.314 904 chr18 74161704 74168285 + 0 NA intron (NM_014643, intron 2 of 7) intron (NM_014643, intron 2 of 7) -38614 NR_136504 101927989 Hs.665186 NR_136504 ENSG00000265778 LOC101927989 - uncharacterized LOC101927989 ncRNA nan nan 0.988 0.574 0.931 0.388 1.894 0.046 0.110 2.215 0.871 3.633 0.347 0.197 0.124 3.042 2.941 6.617 7.543 1.190 nan 11.139 8.840 1.326 1.420 0.062 0.160 5.065 9.599 2.974 2.348 1.660 2.947 3.749 3.975 4.706 5.140 2.481 1.587 0.030 1.428 0.318 0.361 1.894 3.633 0.030 2.318 1.509 0.808 417 chr11 128388397 128404065 + 0 NA intron (NR_120581, intron 1 of 3) MIRb|SINE|MIR 194 NR_120581 101929517 Hs.562320 NR_120581 ENSG00000254588 LOC101929517 - uncharacterized LOC101929517 ncRNA 1.075 1.198 1.081 0.776 1.400 0.605 0.594 1.544 0.093 1.287 0.704 1.031 2.320 0.654 0.106 0.875 1.372 0.974 1.582 1.893 1.895 2.210 0.659 0.245 0.294 0.270 0.341 2.217 2.867 0.619 0.484 1.002 1.282 3.454 3.765 0.620 nan 1.641 0.950 0.989 0.011 0.928 0.269 0.594 1.031 0.531 0.208 0.758 1564 chr7 26233538 26246345 + 0 NA promoter-TSS (NM_007276) promoter-TSS (NM_007276) 472 NM_002137 3181 Hs.487774 NM_002137 ENSG00000122566 HNRNPA2B1 HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|IBMPFD2|RNPA2|SNRPB1 heterogeneous nuclear ribonucleoprotein A2/B1 protein-coding 8.075 4.107 7.549 5.300 6.136 3.759 4.055 2.968 0.241 3.822 1.879 7.314 10.635 7.508 0.274 7.370 7.015 6.349 nan 11.056 9.337 7.145 3.929 12.136 12.466 5.216 6.432 7.153 9.822 7.782 9.572 3.042 7.790 9.344 8.498 9.068 8.128 3.077 1.560 4.454 4.564 2.020 3.817 4.055 7.314 1.300 3.197 2.724 3.492 35 chr1 11104821 11134911 + 0 NA exon (NM_003132, exon 1 of 8) exon (NM_003132, exon 1 of 8) 225 NM_003132 6723 Hs.76244 NM_003132 ENSG00000116649 SRM PAPT|SPDSY|SPS1|SRML1 spermidine synthase protein-coding 1.330 1.341 nan 5.853 0.903 0.486 1.558 0.347 0.101 0.537 0.242 0.457 2.938 0.498 0.131 0.811 0.954 0.562 0.833 5.209 5.046 2.297 0.621 0.955 nan 0.913 nan 6.085 6.489 nan 1.194 0.448 0.627 1.184 1.528 1.131 1.876 1.696 0.933 1.503 1.110 0.494 0.075 1.558 0.457 0.188 0.574 0.124 0.571 587 chr14 37323309 37329054 + 0 NA intron (NM_030631, intron 2 of 9) intron (NM_030631, intron 2 of 9) 95415 NR_039725 100616280 NR_039725 ENSG00000266327 MIR4503 - microRNA 4503 ncRNA 1.211 0.787 0.897 7.466 0.226 0.140 0.112 0.125 0.140 1.065 0.490 1.206 3.494 0.057 0.073 0.219 0.206 0.202 0.366 0.522 0.741 3.396 0.725 0.256 0.240 0.245 0.502 8.119 9.835 0.478 0.238 0.180 0.347 1.344 1.569 0.117 0.204 1.437 0.960 0.649 0.231 0.513 0.033 0.112 1.206 5.383 0.138 0.065 565 chr14 21559851 21579300 + 0 NA exon (NM_001146683, exon 3 of 8) exon (NM_001146683, exon 3 of 8) -2402 NM_001101672 51222 Hs.250493 NM_016423 ENSG00000165804 ZNF219 ZFP219 zinc finger protein 219 protein-coding nan 1.830 3.098 2.292 2.290 1.367 2.751 1.620 0.197 0.485 0.319 2.679 4.844 2.489 0.138 2.034 2.113 2.947 4.030 3.962 3.800 3.017 1.692 3.568 3.852 3.416 4.409 2.986 nan 5.294 4.605 1.865 2.717 1.925 1.641 3.147 4.323 1.266 0.829 2.978 2.383 0.511 1.381 2.751 2.679 2.200 1.882 0.870 1.916 939 chr19 18473137 18500139 + 0 NA Intergenic AluJr|SINE|Alu -10132 NM_004864 9518 Hs.616962 NM_004864 ENSG00000130513 GDF15 GDF-15|MIC-1|MIC1|NAG-1|PDF|PLAB|PTGFB growth differentiation factor 15 protein-coding 2.116 3.288 1.286 1.288 2.332 1.070 2.165 2.627 0.447 0.481 0.230 0.670 2.897 0.353 0.088 0.287 0.350 0.826 3.853 0.711 0.784 5.352 1.396 0.506 0.532 0.488 1.058 4.095 3.966 1.049 0.707 0.465 0.459 2.567 4.358 0.648 1.265 2.053 1.061 1.370 0.352 0.516 0.058 2.165 0.670 0.230 1.682 0.092 0.250 464 chr12 31252322 31274294 + 0 NA Intergenic Intergenic -36527 NR_038927 100506660 Hs.586774 NR_038927 ENSG00000245614 DDX11-AS1 CONCR DDX11 antisense RNA 1 ncRNA 1.895 nan 1.994 4.041 0.835 0.328 0.877 0.168 0.052 1.671 0.663 3.414 2.442 0.133 0.108 0.511 0.757 1.054 1.555 8.430 7.069 2.746 0.968 2.064 2.196 0.316 0.432 4.753 5.000 2.828 3.217 0.729 1.259 7.686 5.866 0.588 1.145 3.279 1.725 3.396 3.181 2.852 1.232 0.877 3.414 0.411 2.366 0.495 0.485 1785 chrX 24893673 24909648 + 0 NA intron (NM_016937, intron 34 of 36) intron (NM_016937, intron 34 of 36) 132405 NM_139058 170302 Hs.300304 NM_139058 ENSG00000004848 ARX CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS aristaless related homeobox protein-coding 0.713 0.837 0.506 0.160 0.345 0.171 0.128 0.109 0.081 0.366 0.221 0.090 0.300 0.149 0.046 0.089 0.077 0.496 0.797 0.305 0.333 2.532 2.821 0.443 0.358 0.330 0.554 0.391 0.696 0.325 0.233 0.144 0.209 0.740 0.828 0.278 0.632 0.685 0.533 0.038 0.072 0.079 0.055 0.128 0.090 0.031 0.031 0.037 0.112 533 chr13 52333341 52346291 + 0 NA Intergenic Intergenic 38482 NM_024705 79758 Hs.266728 NM_024705 ENSG00000102796 DHRS12 SDR40C1 dehydrogenase/reductase 12 protein-coding 0.802 nan nan 0.433 0.193 0.086 0.115 0.351 0.100 0.085 0.083 0.617 0.728 0.041 0.076 0.545 0.722 0.200 0.359 0.626 0.680 nan 0.278 0.303 0.252 0.324 0.486 1.021 1.210 0.549 0.407 0.561 0.855 0.168 0.197 0.826 nan 0.341 0.263 0.654 3.985 0.029 0.183 0.115 0.617 0.075 0.086 0.352 0.295 424 chr12 2984913 2988512 + 0 NA promoter-TSS (NM_001243089) promoter-TSS (NM_001243089) 347 NM_001252499 83695 Hs.198853 NM_001252499 ENSG00000171792 RHNO1 C12orf32|HKMT1188|RHINO RAD9-HUS1-RAD1 interacting nuclear orphan 1 protein-coding 7.407 nan 5.308 13.444 6.583 3.126 5.721 5.220 0.633 4.330 2.083 9.321 17.102 7.683 0.331 4.247 3.960 9.484 12.165 16.871 13.740 12.276 5.663 13.920 14.242 5.924 8.010 8.775 18.957 6.204 5.700 3.166 5.560 8.468 9.203 6.990 9.094 2.821 1.764 6.801 6.906 1.743 6.052 5.721 9.321 3.051 1.579 1.511 3.298 1780 chr9 139419704 139442081 + 0 NA intron (NM_017617, intron 2 of 33) intron (NM_017617, intron 2 of 33) 9346 NM_017617 4851 Hs.495473 NM_017617 ENSG00000148400 NOTCH1 AOS5|AOVD1|TAN1|hN1 notch 1 protein-coding nan 1.361 3.095 0.825 0.427 0.218 0.721 0.709 0.173 0.035 0.056 0.292 1.069 0.500 0.072 1.877 3.011 2.002 3.227 1.557 1.309 nan 0.190 1.492 1.654 0.193 0.346 0.558 0.697 2.278 2.094 1.313 2.481 0.347 0.360 0.457 0.647 0.420 0.314 1.351 0.417 0.047 1.044 0.721 0.292 0.718 0.164 0.800 0.182 626 chr14 103795796 103803456 + 0 NA promoter-TSS (NM_001969) promoter-TSS (NM_001969) -713 NM_001969 1983 Hs.433702 NM_001969 ENSG00000100664 EIF5 EIF-5|EIF-5A eukaryotic translation initiation factor 5 protein-coding 6.950 2.972 4.077 6.631 4.049 1.992 6.064 3.142 0.420 2.067 1.142 5.114 7.611 4.376 0.105 4.209 4.614 6.418 8.269 9.118 9.251 8.947 5.852 9.477 9.709 3.119 4.170 7.592 11.217 8.370 8.350 5.321 10.025 4.239 4.693 4.275 3.420 3.590 1.853 4.090 4.811 0.971 3.026 6.064 5.114 1.274 1.521 3.662 1.167 55 chr1 33281044 33285700 + 0 NA 5' UTR (NM_003680, exon 1 of 13) intron (NM_001256121, intron 1 of 6) 253 NM_022753 64766 Hs.440880 NM_022753 ENSG00000116497 S100PBP S100PBPR S100P binding protein protein-coding 8.921 nan 8.684 17.261 7.123 4.195 7.565 4.885 0.276 6.662 2.962 15.029 15.277 8.791 0.248 7.313 8.027 8.186 11.632 16.129 15.346 nan 3.803 18.812 19.793 7.407 9.302 6.477 8.890 nan 8.910 6.179 9.562 5.777 5.912 7.265 12.115 4.192 nan 10.502 8.380 1.517 6.342 7.565 15.029 1.913 3.789 4.487 5.131 1788 chrX 44731075 44734809 + 0 NA exon (NM_021140, exon 1 of 29) exon (NM_021140, exon 1 of 29) 521 NM_001291415 7403 Hs.522616 NM_021140 ENSG00000147050 KDM6A KABUK2|UTX|bA386N14.2 lysine demethylase 6A protein-coding 7.119 7.047 nan 5.839 4.062 1.839 3.164 3.970 0.299 4.396 1.852 4.228 11.793 3.098 0.046 2.123 2.443 11.608 15.884 9.802 8.691 7.053 3.885 25.446 25.391 4.392 5.551 6.315 12.144 12.911 12.938 2.895 7.916 5.868 5.228 9.431 6.790 2.504 1.412 2.488 4.178 1.454 5.122 3.164 4.228 1.248 2.218 1.401 2.418 709 chr16 52287281 52308913 + 0 NA intron (NR_135281, intron 1 of 2) intron (NR_135281, intron 1 of 2) 5621 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility candidate 22 (non-protein coding) ncRNA nan nan nan 1.423 1.019 0.638 1.526 0.128 0.150 0.058 0.060 1.645 0.707 0.035 0.089 0.291 0.193 0.115 0.121 1.490 1.965 1.360 0.381 0.659 0.740 0.909 nan nan nan nan 0.150 0.096 0.134 0.245 0.378 0.245 nan nan 0.526 2.804 0.201 0.053 0.088 1.526 1.645 0.049 0.150 0.028 0.057 640 chr15 31771834 31780932 + 0 NA exon (NM_130901, exon 14 of 14) exon (NM_130901, exon 14 of 14) 157325 NM_015995 51621 Hs.376443 NM_015995 ENSG00000169926 KLF13 BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1 Kruppel like factor 13 protein-coding 0.574 nan nan 0.067 0.238 0.178 0.296 0.097 0.070 0.189 0.166 0.184 0.260 0.108 0.059 0.620 1.143 0.166 0.357 0.549 0.791 0.380 0.133 0.173 0.187 0.367 0.553 0.229 0.305 1.408 1.389 0.297 0.380 0.209 0.260 0.224 0.226 0.149 0.118 0.071 0.048 0.041 0.070 0.296 0.184 1.340 0.063 0.054 0.076 1247 chr3 20121738 20141929 + 0 NA intron (NM_003884, intron 2 of 17) L1MA8|LINE|L1 -47224 NR_036086 100422901 NR_036086 ENSG00000266745 MIR3135A MIR3135|hsa-mir-3135a microRNA 3135a ncRNA 0.625 0.907 0.857 0.101 0.109 0.080 0.044 0.350 0.128 0.106 0.097 0.087 0.262 0.032 0.093 2.453 2.430 2.113 0.710 0.224 0.335 0.539 0.170 7.848 8.181 0.250 0.466 0.347 0.354 nan 0.309 1.255 2.226 0.106 0.095 0.291 0.755 0.562 0.438 0.082 0.071 0.019 0.048 0.044 0.087 0.012 0.141 1.251 0.139 1180 chr20 60840625 60883587 + 0 NA intron (NM_001278649, intron 11 of 12) intron (NM_001278649, intron 11 of 12) -15846 NM_007002 11047 Hs.90107 NM_007002 ENSG00000130706 ADRM1 ARM-1|ARM1|GP110 adhesion regulating molecule 1 protein-coding 1.171 1.330 1.377 0.488 0.684 0.358 0.497 0.446 0.165 0.336 0.205 0.537 8.536 0.436 0.111 1.448 nan 0.722 0.868 1.004 0.948 1.048 0.471 2.464 2.478 0.679 1.170 1.989 2.461 0.762 0.707 0.599 0.943 0.242 0.227 0.779 0.883 0.807 0.511 1.189 3.711 0.084 0.348 0.497 0.537 0.188 0.571 0.210 0.215 1544 chr7 4749869 4754564 + 0 NA intron (NM_001037165, intron 1 of 8) intron (NM_001037165, intron 1 of 8) 30286 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 1.374 2.136 0.917 1.072 0.621 0.478 1.112 0.623 0.317 0.200 0.230 0.944 nan 0.189 0.178 0.867 1.038 2.078 nan 1.115 0.945 nan 0.170 2.412 2.636 0.575 0.700 nan 6.198 0.314 0.126 0.575 0.626 0.107 0.128 0.236 0.560 0.709 0.382 1.736 0.718 0.062 0.099 1.112 0.944 0.042 5.604 0.684 0.106 1535 chr6 163108866 163129176 + 0 NA intron (NM_013987, intron 1 of 10) intron (NM_013987, intron 1 of 10) -29143 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PARK2CRG PARK2 coregulated protein-coding 0.761 nan 0.991 0.100 0.173 0.079 1.050 0.073 0.066 0.055 0.060 0.094 0.176 0.080 0.103 0.451 0.420 0.265 0.240 0.354 0.350 5.199 1.665 0.170 0.210 1.351 1.410 0.201 0.210 nan 0.412 0.116 0.191 3.521 2.786 0.445 0.861 0.338 0.319 0.017 0.016 1.009 0.035 1.050 0.094 0.014 0.045 0.030 0.304 248 chr10 1549549 1568225 + 0 NA intron (NM_018702, intron 1 of 9) intron (NM_018702, intron 1 of 9) -9938 NR_033387 642394 Hs.568831 NM_001098830 ENSG00000205696 ADARB2-AS1 C10orf109|NCRNA00168|bA466B20.1 ADARB2 antisense RNA 1 ncRNA 0.440 0.426 0.558 0.528 0.420 0.195 0.550 0.123 0.121 0.804 0.389 2.984 0.312 0.062 0.094 0.546 0.478 0.133 0.136 0.784 0.863 0.492 0.180 0.250 0.226 0.097 0.213 2.229 2.235 0.146 0.064 0.340 0.602 0.032 0.073 0.060 0.118 0.363 0.371 0.056 0.465 0.005 0.128 0.550 2.984 0.058 0.252 0.233 0.033 1418 chr5 92953228 92959710 + 0 NA promoter-TSS (NR_031754) promoter-TSS (NR_031754) 25 NR_031754 100313887 NR_031754 ENSG00000113391 MIR2277 mir-2277 microRNA 2277 ncRNA nan 7.666 2.053 1.086 2.821 1.228 4.015 1.128 0.173 1.107 0.585 4.120 7.344 0.188 0.778 1.225 1.541 2.047 2.773 1.746 3.534 2.172 0.150 0.247 2.404 2.823 2.107 5.159 2.157 2.712 0.320 0.439 7.581 7.321 1.518 nan 1.867 1.312 1.686 2.219 1.939 0.565 4.015 0.240 2.035 0.260 0.553 803 chr17 56590352 56597869 + 0 NA intron (NM_004687, intron 1 of 18) intron (NM_004687, intron 1 of 18) 1141 NM_004687 9110 Hs.514373 NM_004687 ENSG00000108389 MTMR4 FYVE-DSP2|ZFYVE11 myotubularin related protein 4 protein-coding 4.943 3.719 3.224 5.186 5.731 3.238 3.506 2.105 0.407 2.462 1.445 3.766 11.528 2.838 0.080 6.206 6.732 4.421 6.859 8.371 5.837 7.447 3.096 nan 12.320 2.416 3.207 nan 14.727 6.351 8.237 2.575 5.207 5.315 4.852 3.682 4.723 2.926 1.366 1.188 4.700 0.544 3.270 3.506 3.766 1.634 2.173 2.273 1.394 1499 chr6 50781507 50818926 + 0 NA intron (NM_003221, intron 3 of 6) intron (NM_003221, intron 3 of 6) 13777 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 0.760 1.403 nan 0.179 1.374 0.707 0.586 0.124 0.095 0.071 0.076 0.891 1.234 0.026 0.102 0.797 0.509 11.466 13.870 0.617 0.786 0.112 0.082 1.049 1.070 0.129 0.228 0.342 0.410 0.223 0.075 0.735 1.083 1.770 1.564 0.164 0.303 0.212 0.241 0.033 0.099 0.237 0.623 0.586 0.891 0.013 0.038 0.569 0.036 304 chr11 12327522 12356284 + 0 NA intron (NM_032867, intron 4 of 8) intron (NM_032867, intron 4 of 8) 33456 NM_032867 84953 Hs.128196 NM_032867 ENSG00000133808 MICALCL Ebitein1 MICAL C-terminal like protein-coding 1.433 nan 1.959 2.746 2.919 1.566 2.498 1.096 0.163 1.321 0.696 10.673 5.768 0.034 0.085 nan 2.173 3.404 2.944 6.891 7.453 4.092 1.308 10.887 11.768 2.230 nan 2.085 1.245 3.479 3.203 2.028 3.251 3.533 3.754 0.830 1.403 3.699 nan 6.734 2.170 1.200 2.421 2.498 10.673 0.313 0.897 2.476 0.605 1272 chr3 114563223 114602014 + 0 NA intron (NR_121662, intron 2 of 6) intron (NR_121662, intron 2 of 6) -9262 NR_126422 104413890 Hs.612732 NR_126422 ENSG00000239946 ZBTB20-AS3 - ZBTB20 antisense RNA 3 ncRNA 1.279 nan 1.114 0.156 5.009 2.686 0.281 0.283 0.104 1.063 0.608 1.363 0.358 0.039 0.071 0.921 0.573 1.000 0.874 0.833 nan 5.519 2.813 0.832 0.815 nan 4.419 0.474 0.434 1.120 0.705 0.241 0.299 1.263 1.442 0.450 1.414 1.498 0.954 1.499 0.255 0.302 0.076 0.281 1.363 0.257 0.358 0.074 0.360 855 chr18 34829177 34850639 + 0 NA intron (NM_001025087, intron 10 of 12) intron (NM_001025087, intron 10 of 12) -14515 NR_134588 105372068 Hs.569903 NR_134588 ENSG00000267202 LOC105372068 - uncharacterized LOC105372068 ncRNA nan 0.746 1.525 0.244 0.285 0.149 0.558 0.042 0.045 0.069 0.081 0.681 1.692 0.116 0.061 3.958 4.207 0.300 0.243 0.850 0.829 2.074 0.741 0.429 0.413 0.338 0.523 nan 2.311 0.677 0.725 0.890 1.101 0.488 0.464 0.288 0.377 1.611 1.372 0.108 0.237 0.114 0.248 0.558 0.681 0.223 0.033 0.208 0.086 1002 chr2 2010605 2020699 + 0 NA intron (NM_001329845, intron 4 of 24) L1MB8|LINE|L1 -267333 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin protein-coding 0.669 0.642 0.670 0.053 0.395 0.238 0.421 0.090 0.129 0.201 0.196 0.224 0.716 0.033 0.146 0.732 1.282 0.193 0.360 0.579 0.646 2.941 0.458 0.120 0.169 2.025 3.002 0.849 0.764 4.860 6.697 0.396 0.496 0.281 0.366 1.351 3.053 0.400 0.424 0.235 0.172 0.019 0.340 0.421 0.224 2.340 0.060 0.473 0.480 1410 chr5 82111285 82119407 + 0 NA Intergenic L2|LINE|L2 -20628 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 0.785 1.145 0.628 0.021 1.046 0.592 0.350 0.261 0.020 0.080 0.134 0.088 0.252 0.093 0.201 0.721 0.421 9.450 3.469 0.462 0.421 0.077 0.007 0.141 0.161 0.450 0.551 0.206 0.196 0.578 0.300 0.127 0.213 0.964 1.129 0.267 nan 0.419 0.470 0.027 0.144 0.094 0.194 0.350 0.088 0.012 0.050 0.012 0.060 1360 chr5 366608 432194 + 0 NA intron (NM_020731, intron 4 of 11) intron (NM_020731, intron 4 of 11) 43874 NR_126522 116349 Hs.446702 NM_138464 ENSG00000221990 EXOC3-AS1 C5orf55 EXOC3 antisense RNA 1 ncRNA 0.809 2.021 2.817 0.928 1.499 0.801 4.227 0.573 0.180 2.965 1.557 2.367 1.617 0.114 0.109 2.117 2.901 1.827 nan 6.681 6.824 4.589 2.139 0.691 0.692 0.377 0.685 nan 4.652 nan 1.432 0.866 1.091 0.856 0.641 0.088 0.121 3.859 nan 2.716 3.876 0.103 0.078 4.227 2.367 1.349 3.342 0.361 0.021 956 chr19 40314109 40337877 + 0 NA intron (NM_001436, intron 7 of 8) AluSc|SINE|Alu -1120 NM_006484 9149 Hs.130988 NM_004714 ENSG00000105204 DYRK1B AOMS3|MIRK dual specificity tyrosine phosphorylation regulated kinase 1B protein-coding 2.416 1.190 2.856 4.027 1.556 1.085 0.840 0.429 0.102 1.119 0.655 1.269 5.794 1.208 0.108 2.219 2.470 1.683 2.421 3.022 2.834 4.514 1.795 4.572 4.874 1.630 2.145 2.175 3.701 4.685 4.327 1.544 2.480 1.971 2.437 2.547 2.747 2.581 1.383 0.928 1.483 0.361 0.416 0.840 1.269 0.383 2.000 0.904 0.668 1289 chr3 137892152 137915685 + 0 NA Intergenic Intergenic -2172 NM_001267042 25852 Hs.744868 NM_014154 ENSG00000114098 ARMC8 GID5|HSPC056|S863-2|VID28 armadillo repeat containing 8 protein-coding 2.447 nan nan 1.558 1.432 0.807 0.824 0.839 0.246 0.978 0.676 1.075 1.615 0.627 0.086 1.887 1.972 1.811 2.559 2.643 2.496 4.934 1.849 3.090 3.370 2.144 2.778 1.572 2.122 nan 3.194 1.397 2.351 0.848 0.850 1.616 2.092 1.472 0.857 0.953 0.865 0.177 0.782 0.824 1.075 0.322 0.587 0.528 0.522 1436 chr5 154127118 154139705 + 0 NA intron (NM_015315, intron 1 of 18) intron (NM_015315, intron 1 of 18) 40949 NM_015315 23367 Hs.292078 NM_015315 ENSG00000155506 LARP1 LARP La ribonucleoprotein domain family member 1 protein-coding 2.995 nan 2.390 1.265 2.488 1.274 1.646 1.963 0.214 1.234 0.625 2.614 4.196 2.893 0.139 1.949 1.949 2.579 3.775 2.233 2.213 2.692 1.067 3.979 3.607 2.325 3.011 2.109 2.849 6.563 7.850 2.467 4.620 3.974 3.412 3.497 3.308 1.161 0.650 0.949 2.664 1.091 1.855 1.646 2.614 0.856 1.644 1.445 1.836 603 chr14 69817289 69829838 + 0 NA Intergenic AluY|SINE|Alu 41458 NM_004450 2079 Hs.509791 NM_004450 ENSG00000100632 ERH DROER enhancer of rudimentary homolog (Drosophila) protein-coding 1.387 0.615 0.727 0.144 0.298 0.158 0.280 0.197 0.064 0.049 0.080 0.167 0.457 0.043 0.102 0.490 0.411 0.293 0.444 0.501 0.519 0.317 0.207 0.536 0.528 0.431 0.765 2.293 nan 0.832 0.738 0.375 0.406 0.099 0.159 0.182 0.276 0.829 nan 11.295 1.968 0.015 0.151 0.280 0.167 0.116 0.161 0.055 0.059 1333 chr4 41814706 41849528 + 0 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 52511 NR_104143 101927074 Hs.611425 NR_104143 ENSG00000245870 LINC00682 - long intergenic non-protein coding RNA 682 ncRNA 1.174 nan nan 0.094 0.156 0.111 0.084 0.092 0.093 0.127 0.142 0.052 0.207 0.013 0.083 0.313 0.159 0.164 0.194 0.200 0.216 0.119 0.081 0.118 0.103 0.128 0.275 0.224 0.199 1.364 1.178 0.121 0.146 0.044 0.040 1.430 5.014 0.590 0.777 0.018 0.150 0.022 0.648 0.084 0.052 0.043 0.035 0.040 2.612 1297 chr3 157818973 157830202 + 0 NA promoter-TSS (NM_001163678) promoter-TSS (NM_001163678) -635 NM_006884 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding nan 2.760 4.100 2.109 1.383 0.770 1.589 3.790 0.344 1.438 0.809 2.133 2.418 0.713 0.061 1.132 1.383 0.438 0.497 3.929 3.134 4.449 2.036 2.578 2.671 4.987 nan 2.499 3.527 4.701 4.180 0.661 1.380 2.118 2.379 2.135 3.191 1.524 1.118 0.951 1.318 0.412 0.892 1.589 2.133 0.654 1.230 0.664 0.878 1198 chr21 34912025 34918441 + 0 NA promoter-TSS (NM_001291412) promoter-TSS (NM_001291412) -35 NM_001136006 2618 Hs.473648 NM_000819 ENSG00000159131 GART AIRS|GARS|GARTF|PAIS|PGFT|PRGS phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase protein-coding 6.739 3.432 5.888 5.824 6.101 3.147 5.116 3.308 0.176 2.715 0.979 5.813 14.380 4.092 0.106 10.674 8.355 7.591 9.967 9.588 10.036 6.252 4.475 19.606 21.441 6.589 8.226 8.788 13.499 14.648 13.793 5.494 9.013 8.591 11.471 10.381 9.497 nan 2.906 4.561 5.964 1.676 3.259 5.116 5.813 1.832 2.801 2.844 2.694 832 chr17 78636352 78682835 + 0 NA intron (NM_001163034, intron 3 of 29) intron (NM_001163034, intron 3 of 29) 119839 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 1.254 1.037 1.721 0.967 0.518 0.313 0.719 0.218 0.135 0.199 0.199 0.619 1.489 0.073 0.118 0.541 0.793 0.284 0.453 1.171 1.239 1.496 0.342 0.433 0.449 nan 1.327 3.854 4.212 1.240 1.057 0.723 0.909 0.912 1.039 0.481 0.977 nan 0.686 1.773 1.844 0.166 0.152 0.719 0.619 0.323 2.579 0.595 0.208 276 chr10 99077877 99097824 + 0 NA Intergenic Intergenic 6608 NM_012083 23401 Hs.140720 NM_012083 ENSG00000181274 FRAT2 - FRAT2, WNT signaling pathway regulator protein-coding 2.014 2.208 2.536 1.494 1.717 0.755 0.879 0.574 0.128 0.558 0.243 3.279 4.101 0.990 0.086 1.462 2.056 2.864 3.314 2.502 2.650 3.205 2.089 2.058 2.180 0.670 0.948 nan 5.136 1.527 1.875 1.176 1.598 1.494 1.645 1.094 1.351 1.393 0.812 0.942 1.805 0.291 0.780 0.879 3.279 0.182 1.556 0.258 0.306 178 chr1 173792069 173795053 + 0 NA promoter-TSS (NM_001171182) promoter-TSS (NM_001171182) 216 NM_001127181 91687 Hs.531856 NM_033319 ENSG00000120334 CENPL C1orf155|CENP-L|dJ383J4.3 centromere protein L protein-coding 7.934 7.444 5.351 5.426 6.001 3.591 6.573 6.952 0.902 4.288 1.573 6.785 15.950 7.591 0.235 7.505 7.995 18.785 23.189 15.659 12.610 10.445 5.217 20.875 22.301 8.073 9.541 10.858 14.362 9.534 9.856 7.553 13.743 11.917 12.340 9.394 10.368 3.709 2.188 5.279 10.374 2.146 3.435 6.573 6.785 1.912 3.995 3.820 3.182 1224 chr22 31736305 31744545 + 0 NA exon (NM_032050, exon 1 of 4) exon (NM_032050, exon 1 of 4) 1824 NM_032051 23598 Hs.731398 NM_014323 ENSG00000100105 PATZ1 MAZR|PATZ|RIAZ|ZBTB19|ZNF278|ZSG|dJ400N23 POZ/BTB and AT hook containing zinc finger 1 protein-coding nan 3.204 6.517 4.729 5.495 2.209 3.813 0.981 0.233 1.805 1.127 10.048 10.078 2.543 0.114 6.793 7.435 4.966 nan 9.220 7.931 3.544 1.290 5.944 5.632 2.958 nan 7.790 11.503 5.515 5.374 4.007 9.051 2.960 2.484 2.432 nan 1.966 0.874 3.687 2.099 0.875 4.793 3.813 10.048 1.237 2.152 3.371 1.181 148 chr1 157013017 157018628 + 0 NA promoter-TSS (NM_198236) promoter-TSS (NM_198236) -660 NM_198236 9826 Hs.516954 NM_014784 ENSG00000132694 ARHGEF11 GTRAP48|PDZ-RHOGEF Rho guanine nucleotide exchange factor 11 protein-coding nan nan 2.724 1.867 2.033 1.226 2.963 1.615 0.120 1.462 0.871 3.456 5.255 3.077 0.136 6.305 5.955 9.708 7.392 6.785 nan 4.388 2.024 2.488 2.581 2.461 3.141 5.137 7.385 2.705 2.183 7.217 10.161 2.138 1.507 3.000 3.510 2.210 0.796 1.109 3.334 0.270 0.518 2.963 3.456 0.296 2.533 3.267 0.840 1684 chr8 128948084 128953509 + 0 NA intron (NR_003367, intron 2 of 8) intron (NR_003367, intron 2 of 8) 10173 NR_103558 641384 Hs.629674 NM_001037234 ENSG00000280055 TMEM75 - transmembrane protein 75 ncRNA nan nan nan 0.211 0.640 0.217 0.094 0.578 0.176 0.173 0.152 0.132 nan 0.170 0.060 1.964 2.198 0.611 1.006 0.425 0.536 0.811 0.332 nan nan 0.608 0.798 1.277 1.476 0.548 0.447 0.356 0.405 0.157 0.156 0.393 0.680 0.348 0.306 0.279 0.149 0.107 0.043 0.094 0.132 6.133 0.186 0.079 0.154 435 chr12 7008314 7025048 + 0 NA intron (NM_201650, intron 5 of 7) MIRc|SINE|MIR 2784 NM_201650 10233 Hs.155586 NM_006992 ENSG00000010626 LRRC23 LRPB7 leucine rich repeat containing 23 protein-coding 2.075 nan nan 1.850 2.043 1.112 2.150 0.192 0.067 0.732 0.515 2.053 3.901 0.748 0.171 0.800 1.308 1.945 2.843 nan 4.219 5.023 2.815 1.774 1.828 1.694 2.377 1.384 2.695 0.967 0.846 0.957 1.740 1.999 1.707 1.906 nan 1.313 0.755 1.298 1.437 0.346 1.544 2.150 2.053 3.166 0.643 0.566 1.136 28 chr1 8679372 8713615 + 0 NA intron (NM_012102, intron 3 of 23) FRAM|SINE|Alu -141520 NR_132752 106632271 NR_132752 SNORD128 ZL43 small nucleolar RNA, C/D box 128 snoRNA 1.128 nan 1.728 0.631 0.744 0.388 1.155 0.331 0.117 0.352 0.368 0.353 0.689 0.329 0.124 0.345 0.418 0.868 2.356 1.742 1.974 1.030 0.434 0.785 0.720 1.243 nan nan 4.762 nan 0.579 0.323 0.411 0.466 0.837 0.786 1.730 1.325 0.692 0.335 0.878 0.137 0.886 1.155 0.353 0.167 0.089 0.081 0.383 906 chr18 74228387 74246700 + 0 NA Intergenic Intergenic -3069 NR_015417 284276 Hs.390287 NR_015417 ENSG00000263812 LINC00908 - long intergenic non-protein coding RNA 908 ncRNA nan nan 0.657 1.017 3.343 1.807 2.325 0.054 0.087 1.097 0.600 7.766 1.160 0.036 0.081 0.614 0.774 0.279 0.389 6.947 nan 5.913 3.366 0.538 0.582 0.078 0.135 4.369 nan 1.664 1.644 0.521 0.660 1.428 0.813 0.759 1.135 4.203 2.456 0.043 0.252 0.049 0.796 2.325 7.766 0.063 0.556 0.367 0.282 1359 chr5 294501 323843 + 0 NA intron (NM_001267558, intron 5 of 6) intron (NM_001267558, intron 5 of 6) 4881 NM_001242412 57491 Hs.50823 NM_020731 ENSG00000063438 AHRR AHH|AHHR|bHLHe77 aryl-hydrocarbon receptor repressor protein-coding 0.555 1.806 1.810 1.200 2.501 1.177 1.695 0.407 0.195 0.970 0.796 7.967 3.283 0.206 0.110 0.973 1.535 0.511 nan 8.160 7.159 2.638 0.822 0.778 0.888 0.434 0.856 nan 8.199 nan 0.502 0.720 1.158 0.258 0.227 0.147 0.218 1.946 nan 3.784 2.630 0.042 0.079 1.695 7.967 0.292 0.490 0.638 0.071 1101 chr2 208173076 208185117 + 0 NA Intergenic Intergenic -44948 NR_031633 100302130 NR_031633 ENSG00000221628 MIR1302-4 MIRN1302-4|hsa-mir-1302-4 microRNA 1302-4 ncRNA 1.161 nan 1.230 0.679 4.910 2.838 0.768 0.219 0.013 0.181 0.098 1.240 1.294 0.036 0.122 0.465 0.437 0.289 0.344 0.298 0.254 0.267 0.089 1.104 1.344 3.911 4.182 0.845 0.517 0.834 0.713 0.203 0.204 1.483 2.389 0.453 1.014 0.289 0.274 1.009 0.613 0.483 0.518 0.768 1.240 0.686 0.885 0.066 0.174 1027 chr2 27576747 27583877 + 0 NA promoter-TSS (NM_001318909) promoter-TSS (NM_001318909) -411 NM_001521 2976 Hs.75782 NM_001521 ENSG00000115207 GTF3C2 TFIIIC-BETA|TFIIIC110 general transcription factor IIIC subunit 2 protein-coding 4.500 1.919 3.012 2.908 2.673 1.326 2.359 1.200 0.523 1.681 0.776 2.055 6.043 3.822 0.211 3.350 2.780 3.380 5.327 4.287 3.458 5.744 2.750 11.679 12.122 2.720 3.727 6.889 nan 5.100 5.951 1.854 3.064 2.672 2.749 6.935 10.074 2.675 1.345 1.755 2.317 0.319 1.621 2.359 2.055 1.253 1.412 0.888 3.567 746 chr17 16117396 16121700 + 0 NA promoter-TSS (NM_004278) promoter-TSS (NM_004278) -674 NM_006311 9611 Hs.462323 NM_006311 ENSG00000141027 NCOR1 N-CoR|N-CoR1|PPP1R109|TRAC1|hN-CoR nuclear receptor corepressor 1 protein-coding 6.586 3.104 4.368 3.430 4.651 2.119 4.030 1.756 0.222 1.519 1.123 6.308 5.874 2.291 0.036 8.135 7.960 7.854 10.847 8.573 7.867 9.888 3.485 8.457 9.117 2.713 3.675 8.111 11.127 nan 11.894 2.893 5.878 3.815 3.638 9.101 8.959 2.350 0.984 2.249 2.910 0.797 2.891 4.030 6.308 1.996 11.190 1.611 3.417 1326 chr4 26228222 26250505 + 0 NA Intergenic MIRb|SINE|MIR -81969 NM_005349 3516 Hs.479396 NM_005349 ENSG00000168214 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 1.207 0.914 nan 1.826 1.282 0.588 0.963 0.108 0.080 1.140 0.621 2.667 2.524 0.044 0.082 0.343 0.145 0.219 0.337 1.797 1.802 1.999 0.598 0.288 0.252 0.899 1.162 2.071 2.167 2.450 2.396 0.135 0.305 1.018 1.124 0.724 1.409 nan 1.632 0.385 1.687 0.410 0.146 0.963 2.667 0.205 1.414 0.106 0.155 1136 chr20 18035932 18041097 + 0 NA promoter-TSS (NM_021220) promoter-TSS (NM_021220) 12 NM_021220 58495 Hs.661013 NM_021220 ENSG00000125850 OVOL2 EUROIMAGE566589|PPCD1|ZNF339 ovo like zinc finger 2 protein-coding 1.808 5.681 3.923 6.881 6.858 3.414 1.772 0.058 0.032 2.579 1.744 8.242 11.953 0.191 0.122 2.404 4.950 3.249 3.798 13.407 10.538 6.996 1.421 7.747 7.234 0.099 0.374 4.498 5.539 1.310 1.520 3.205 7.836 9.158 6.686 0.204 0.557 2.909 1.736 4.214 4.513 3.456 2.039 1.772 8.242 0.505 0.676 8.061 0.055 1724 chr9 14514151 14548023 + 0 NA Intergenic Intergenic -132105 NM_001190738 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding nan nan 1.121 0.362 0.373 0.215 0.536 0.095 0.085 2.754 1.881 0.184 1.221 0.048 0.067 0.237 0.174 0.224 0.316 0.582 0.797 10.001 3.264 0.111 0.107 46.103 44.762 0.258 0.288 0.478 0.305 0.917 2.124 0.801 0.576 1.080 3.090 1.675 1.220 1.694 1.835 0.096 0.052 0.536 0.184 0.132 1.054 1.434 1.737 811 chr17 69418500 69436050 + 0 NA Intergenic Intergenic -228955 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility candidate 17 (non-protein coding) ncRNA 0.901 nan 0.521 0.404 6.101 3.322 0.433 0.277 0.083 0.491 0.389 2.422 3.780 0.074 0.134 0.522 0.410 0.317 0.981 1.660 1.839 2.510 0.828 0.245 0.234 0.658 nan 0.706 0.700 0.722 0.329 0.183 0.398 1.074 2.161 0.131 0.194 0.943 0.607 0.278 1.081 0.318 0.045 0.433 2.422 0.100 0.086 0.129 0.028 497 chr12 103341697 103366172 + 0 NA 3' UTR (NM_004316, exon 2 of 2) 3' UTR (NM_004316, exon 2 of 2) 2482 NM_004316 429 Hs.703025 NM_004316 ENSG00000139352 ASCL1 ASH1|HASH1|MASH1|bHLHa46 achaete-scute family bHLH transcription factor 1 protein-coding 1.546 3.783 nan 8.288 9.521 5.148 1.919 0.134 0.119 5.975 3.019 7.511 14.604 0.040 0.086 0.183 0.108 0.141 0.181 17.159 14.254 7.101 2.826 0.115 0.133 0.153 0.260 12.639 11.184 0.652 0.449 0.081 0.085 5.191 2.553 0.474 1.101 5.433 2.844 11.692 11.270 0.669 0.178 1.919 7.511 0.091 3.827 0.014 0.091 899 chr18 60842707 60885650 + 0 NA intron (NM_000633, intron 2 of 2) intron (NM_000633, intron 2 of 2) 122435 NM_000657 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2, apoptosis regulator protein-coding 0.866 1.105 1.727 2.034 1.475 0.855 0.445 0.126 0.068 0.541 0.240 0.851 4.893 0.063 0.072 0.976 1.162 2.122 2.220 1.581 1.720 3.889 1.449 1.629 nan 0.203 nan 5.161 4.826 0.357 0.167 1.750 2.625 1.028 1.885 0.131 0.188 5.050 2.814 3.213 1.186 0.258 0.385 0.445 0.851 0.106 1.159 2.252 0.069 1148 chr20 24962482 24976271 + 0 NA intron (NM_020531, intron 1 of 8) intron (NM_020531, intron 1 of 8) 4049 NM_020531 57136 Hs.472330 NM_020531 ENSG00000101474 APMAP BSCv|C20orf3 adipocyte plasma membrane associated protein protein-coding 1.677 2.350 nan 1.112 0.886 0.533 0.860 0.842 0.036 0.441 0.234 1.021 4.236 0.432 0.073 1.836 2.039 1.149 1.894 1.997 1.897 2.298 0.738 1.184 1.323 1.560 2.027 3.737 3.863 2.511 2.065 1.000 1.714 2.511 4.205 0.976 1.627 2.157 0.999 1.453 0.465 0.938 0.115 0.860 1.021 0.555 1.287 0.481 0.465 628 chr14 105249183 105272195 + 0 NA promoter-TSS (NM_005163) promoter-TSS (NM_005163) -751 NM_005163 207 Hs.525622 NM_005163 ENSG00000142208 AKT1 AKT|CWS6|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA AKT serine/threonine kinase 1 protein-coding 1.913 1.313 4.784 1.245 0.847 0.488 1.634 0.828 0.149 0.496 0.230 0.739 2.074 1.215 0.108 1.066 2.025 1.123 1.624 3.244 2.942 2.603 0.757 0.605 0.477 0.776 1.372 2.126 3.329 1.502 1.530 1.193 1.551 0.732 0.726 0.553 0.711 1.608 0.833 3.753 0.320 0.132 0.217 1.634 0.739 0.281 0.483 0.402 0.182 967 chr19 45593735 45643583 + 0 NA intron (NM_019121, intron 1 of 12) MIR3|SINE|MIR 22228 NM_019121 284352 Hs.285363 NM_019121 ENSG00000104866 PPP1R37 LRRC68 protein phosphatase 1 regulatory subunit 37 protein-coding 2.286 1.835 3.312 1.505 4.587 2.297 1.534 0.368 0.090 1.223 0.874 4.306 1.249 0.624 0.125 1.141 1.321 1.127 1.625 5.115 5.325 4.632 1.556 2.312 2.411 0.845 1.353 3.735 4.179 1.783 1.523 1.353 1.845 2.738 2.672 1.164 1.635 2.135 1.247 1.422 4.126 0.970 0.732 1.534 4.306 0.427 0.688 0.774 0.458 1492 chr6 44621300 44643576 + 0 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -112820 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 1.087 0.879 0.957 0.068 0.281 0.108 0.752 1.354 0.105 0.084 0.133 0.096 0.407 0.098 0.115 0.477 0.445 1.730 7.940 0.329 0.416 0.162 0.077 0.368 0.378 0.165 0.288 0.531 nan 0.419 0.235 0.348 0.532 0.125 0.139 0.784 1.862 0.641 0.462 0.375 0.104 0.034 0.057 0.752 0.096 0.040 0.222 0.097 0.928 752 chr17 20972507 20982442 + 0 NA Intergenic LTR47B|LTR|ERVL -1395 NR_110895 101060544 Hs.585812 NR_110895 ENSG00000236819 LINC01563 HP08942 long intergenic non-protein coding RNA 1563 ncRNA nan nan nan 0.072 0.375 0.258 0.064 0.076 0.080 0.127 0.092 0.061 0.222 0.079 0.091 0.352 0.288 0.280 0.205 0.668 0.525 0.732 0.248 0.170 0.102 2.108 2.258 0.370 0.453 5.429 4.933 0.096 0.161 0.058 0.056 3.635 9.203 0.363 0.362 0.881 0.144 0.019 0.008 0.064 0.061 0.020 0.092 0.020 4.179 1318 chr3 189507049 189525612 + 0 NA intron (NM_001329146, intron 1 of 10) intron (NM_001329146, intron 1 of 10) 8881 NM_001329150 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 1.285 1.353 0.960 0.247 0.472 0.224 0.284 0.284 0.078 0.127 0.174 0.084 0.789 0.036 0.068 0.266 0.172 0.317 0.873 0.403 0.444 4.601 1.387 0.317 0.339 0.156 0.292 0.629 0.633 0.659 0.293 0.096 0.183 1.311 1.137 0.537 1.104 0.544 0.542 0.054 0.091 0.163 0.146 0.284 0.084 0.020 0.068 0.022 0.203 577 chr14 24834064 24849252 + 0 NA exon (NM_001136022, exon 4 of 10) exon (NM_001136022, exon 4 of 10) 3299 NM_001288802 4776 Hs.77810 NM_004554 ENSG00000100968 NFATC4 NF-AT3|NF-ATC4|NFAT3 nuclear factor of activated T-cells 4 protein-coding nan 2.435 2.199 2.515 3.506 1.837 3.053 2.664 0.382 0.674 0.496 2.515 4.281 0.871 0.111 0.590 1.203 1.363 1.861 4.943 4.656 1.353 0.518 2.564 2.823 0.798 1.168 5.774 nan 5.250 4.888 1.341 2.756 1.850 1.411 1.297 2.426 1.345 0.747 2.484 7.645 0.589 2.332 3.053 2.515 1.444 1.576 2.773 0.810 215 chr1 216853613 216902448 + 0 NA intron (NM_001243511, intron 2 of 7) intron (NM_001243511, intron 2 of 7) 18784 NM_001243515 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR3|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 1.385 1.364 6.557 0.675 2.157 1.248 0.435 0.128 0.082 1.342 0.790 0.725 nan 0.058 0.112 0.425 0.337 0.449 0.654 1.047 1.156 nan 0.357 0.601 0.665 1.651 nan 0.357 0.422 3.182 2.940 0.110 0.198 3.710 4.072 4.700 6.720 0.985 0.775 0.019 0.096 0.729 1.430 0.435 0.725 0.296 0.293 0.057 2.319 1108 chr2 219431966 219435294 + 0 NA promoter-TSS (NM_020935) promoter-TSS (NM_020935) 327 NM_001271635 9125 Hs.148767 NM_005444 ENSG00000144580 CNOT9 CAF40|CT129|RCD-1|RCD1|RQCD1 CCR4-NOT transcription complex subunit 9 protein-coding nan 5.282 nan 8.408 9.316 4.620 7.042 4.655 0.368 4.284 1.809 6.928 18.139 6.323 0.167 10.320 9.078 12.845 17.514 9.960 9.172 9.189 6.150 19.201 19.501 6.937 8.352 12.809 19.718 13.424 12.751 5.503 11.287 5.388 8.064 11.000 10.197 3.955 2.017 6.301 4.151 1.146 3.217 7.042 6.928 2.309 3.916 2.671 2.854 1313 chr3 186990746 186995194 + 0 NA intron (NR_033519, intron 1 of 9) intron (NR_033519, intron 1 of 9) -16090 NR_135551 101929130 NR_135551 ENSG00000283175 LOC101929130 - uncharacterized LOC101929130 ncRNA 1.069 0.969 0.611 0.079 0.439 0.144 0.485 0.120 0.036 0.129 0.093 0.055 0.554 0.048 0.110 8.466 8.491 13.450 11.609 0.344 0.378 0.185 0.096 0.554 0.392 0.052 0.230 0.314 0.233 3.337 3.513 5.983 7.731 0.038 0.044 0.209 0.256 0.105 0.279 0.026 0.059 0.022 0.037 0.485 0.055 0.021 4.895 0.029 1170 chr20 50600698 50669148 + 0 NA Intergenic MIR|SINE|MIR 87100 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 0.921 1.177 0.648 0.117 0.292 0.129 0.419 1.363 0.423 0.131 0.136 0.139 0.457 3.381 0.212 0.573 nan 0.230 0.498 0.254 0.285 1.366 0.372 0.310 0.337 0.471 0.811 0.287 0.357 1.128 1.076 0.288 0.383 0.339 0.468 0.483 1.151 0.374 0.481 0.034 0.085 0.123 0.238 0.419 0.139 0.180 0.056 0.075 0.145 1242 chr22 50326540 50333744 + 0 NA Intergenic Intergenic 17864 NR_104295 79174 Hs.211282 NM_024324 ENSG00000184164 CRELD2 - cysteine rich with EGF like domains 2 protein-coding 1.225 0.879 nan 0.611 3.123 2.004 3.984 2.603 0.271 0.282 0.305 2.557 1.114 2.957 0.132 1.670 4.646 0.832 1.291 3.017 2.508 1.054 0.508 1.379 1.170 0.161 0.321 3.322 6.684 1.192 1.074 0.601 0.963 0.617 0.653 0.876 1.562 1.318 0.724 0.449 0.477 0.079 0.705 3.984 2.557 0.696 4.978 1.170 0.511 1202 chr21 36584164 36613480 + 0 NA Intergenic Intergenic -177227 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha runt related transcription factor 1 protein-coding 0.774 0.714 1.158 0.482 1.340 0.509 0.415 0.993 0.137 0.272 0.102 2.510 2.158 0.037 0.051 1.048 1.304 0.924 1.751 2.713 2.320 3.329 0.932 1.019 1.039 0.146 0.277 4.022 3.645 0.608 0.294 0.276 0.450 0.127 0.165 0.156 0.213 nan 0.981 2.321 2.938 0.026 0.062 0.415 2.510 0.016 0.139 0.128 0.047 385 chr11 78644065 78666335 + 0 NA intron (NM_001098816, intron 6 of 33) MIRc|SINE|MIR -369291 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial (putative) protein-coding nan 1.184 0.758 0.615 1.756 0.937 0.623 0.098 0.084 0.185 0.129 1.455 0.567 0.069 0.100 1.624 1.772 0.191 0.321 3.559 3.959 1.894 0.449 1.274 1.278 0.317 0.538 2.521 2.500 1.021 0.770 1.463 2.761 1.664 1.240 0.301 0.825 1.164 0.994 0.259 0.308 0.545 1.704 0.623 1.455 1.520 0.060 1.895 0.189 1271 chr3 114361925 114370900 + 0 NA intron (NR_121662, intron 3 of 6) MIRb|SINE|MIR -22620 NM_001164346 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 1.020 nan 0.684 0.146 0.491 0.197 0.212 1.659 0.214 0.105 0.193 0.118 0.157 0.119 0.116 0.443 0.223 6.590 4.544 0.346 nan 0.470 0.274 0.305 0.270 nan 1.454 0.265 0.235 0.707 0.254 0.071 0.243 0.070 0.091 0.262 0.273 0.478 0.476 0.167 0.060 0.011 0.107 0.212 0.118 0.022 0.009 0.055 0.082 858 chr18 35062752 35108418 + 0 NA intron (NM_001025087, intron 1 of 12) intron (NM_001025087, intron 1 of 12) -39118 NR_132967 106635546 NR_132967 SNORA111 - small nucleolar RNA, H/ACA box 111 snoRNA nan 0.911 0.612 0.461 1.035 0.494 2.038 0.043 0.056 0.591 0.349 1.026 0.826 0.055 0.063 0.627 0.854 0.660 0.483 1.278 1.252 4.976 1.257 0.140 0.122 0.366 0.521 nan 1.681 0.624 0.601 0.217 0.318 1.608 1.397 0.373 0.564 2.483 1.703 2.892 1.211 0.407 0.161 2.038 1.026 0.219 0.058 0.103 0.160 477 chr12 54663827 54678528 + 0 NA intron (NM_012117, intron 1 of 4) AluSx1|SINE|Alu 2738 NM_012117 23468 Hs.349283 NM_012117 ENSG00000094916 CBX5 HEL25|HP1|HP1A chromobox 5 protein-coding nan 2.269 2.879 3.274 3.662 1.913 2.185 1.843 0.153 2.155 1.311 3.030 6.197 2.086 0.118 nan 5.515 4.923 6.696 6.361 nan 6.923 5.693 10.364 11.231 3.038 nan 5.427 nan 7.044 6.322 4.355 5.842 4.704 5.579 6.787 6.526 3.921 1.830 1.404 3.131 0.868 1.214 2.185 3.030 0.874 1.281 1.926 1.877 425 chr12 6471038 6494500 + 0 NA intron (NM_001159576, intron 1 of 11) intron (NM_001159576, intron 1 of 11) 1621 NM_001159576 6337 Hs.591047 NM_001038 ENSG00000111319 SCNN1A BESC2|ENaCa|ENaCalpha|SCNEA|SCNN1 sodium channel epithelial 1 alpha subunit protein-coding 1.061 nan nan 9.855 3.798 2.064 1.188 0.667 0.103 2.313 1.190 6.346 5.263 0.120 0.120 0.853 1.391 0.624 1.379 nan 9.449 8.342 2.417 3.650 3.811 0.208 0.506 4.181 4.951 0.457 0.213 1.411 2.246 2.738 2.433 0.847 nan 1.196 0.531 3.100 3.404 1.155 5.090 1.188 6.346 0.929 0.436 1.523 0.273 272 chr10 63626324 63873506 + 0 NA intron (NM_032199, intron 3 of 9) intron (NM_032199, intron 3 of 9) -59055 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 0.790 nan 0.964 0.109 0.808 0.410 0.102 1.688 0.163 0.176 0.153 0.478 0.664 4.780 0.165 0.327 0.234 2.848 5.263 0.465 0.477 0.867 0.448 0.822 0.848 0.532 0.722 0.487 0.521 0.243 0.144 0.139 0.201 0.517 0.660 0.176 nan 0.632 0.463 0.013 0.219 0.135 0.175 0.102 0.478 0.051 0.123 0.052 0.114 735 chr17 7135058 7147566 + 0 NA intron (NM_024297, intron 1 of 4) CpG 937 NM_001284518 79142 Hs.644724 NM_024297 ENSG00000040633 PHF23 hJUNE-1b PHD finger protein 23 protein-coding 4.759 2.146 3.124 3.240 4.258 2.545 3.517 1.909 0.250 1.165 0.526 4.287 7.606 11.101 0.379 5.297 6.065 4.795 6.400 8.158 7.305 6.047 2.477 8.037 8.547 3.570 4.901 6.920 9.708 3.441 3.409 1.671 3.047 2.858 3.505 7.350 8.799 2.167 0.963 3.450 2.628 0.671 1.742 3.517 4.287 1.774 3.349 1.446 3.082 354 chr11 63674273 63707513 + 0 NA Intergenic Intergenic -6577 NM_173587 283248 Hs.98788 NM_173587 ENSG00000167771 RCOR2 - REST corepressor 2 protein-coding nan 1.190 1.377 2.036 0.820 0.448 2.101 0.360 0.170 0.193 0.181 1.062 2.205 1.376 0.103 3.867 5.230 0.748 1.111 3.385 2.992 1.974 0.697 1.525 1.440 1.291 1.835 4.080 4.881 3.526 3.812 1.164 1.747 1.973 1.520 2.217 4.348 0.802 0.574 2.184 0.916 0.777 1.623 2.101 1.062 1.281 1.540 0.771 1.972 1151 chr20 30840133 30879227 + 0 NA Intergenic Intergenic -5774 NM_004798 9371 Hs.369670 NM_004798 ENSG00000101350 KIF3B FLA8|HH0048|KLP-11 kinesin family member 3B protein-coding 1.206 1.595 1.249 1.090 0.667 0.394 0.245 0.267 0.206 0.386 0.301 0.897 1.548 0.208 0.147 0.783 0.880 0.465 0.701 0.837 nan 5.707 1.387 0.588 0.648 0.798 1.253 1.946 1.905 1.038 0.706 0.447 0.759 1.261 1.432 0.545 nan 0.861 0.509 0.328 0.412 0.356 0.124 0.245 0.897 0.166 0.337 0.263 0.206 1350 chr4 111943524 111952518 + 0 NA Intergenic THE1D|LTR|ERVL-MaLR -384742 NM_001204398 5308 Hs.643588 NM_000325 ENSG00000164093 PITX2 ARP1|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS paired like homeodomain 2 protein-coding 0.647 0.652 0.517 0.079 0.233 0.090 0.014 0.102 0.090 0.030 0.062 0.063 0.226 0.023 0.126 0.762 0.352 9.372 0.908 0.119 0.176 0.079 0.041 0.473 0.501 0.250 0.276 0.238 0.255 0.193 0.043 0.194 0.360 0.032 0.095 0.388 0.751 0.113 0.206 0.006 0.030 0.008 0.014 0.063 0.033 0.071 0.072 138 chr1 155188296 155198742 + 0 NA intron (NR_002188, intron 1 of 12) AluJo|SINE|Alu 3806 NR_002188 2630 Hs.719930 NR_002188 ENSG00000160766 GBAP1 GBAP glucosylceramidase beta pseudogene 1 pseudo nan nan 2.532 2.209 2.540 1.031 2.852 2.534 0.771 1.387 1.041 2.301 8.413 2.105 0.165 3.019 2.549 3.601 5.613 4.385 nan 5.140 2.143 1.650 1.953 2.850 3.574 3.368 5.334 3.498 2.711 3.136 3.960 2.163 2.978 3.517 5.024 2.161 1.109 3.248 4.812 0.509 1.192 2.852 2.301 0.784 2.201 1.828 1.586 958 chr19 41075331 41083877 + 0 NA intron (NM_020971, intron 35 of 35) AluSp|SINE|Alu -3153 NM_138392 92799 Hs.26506 NM_138392 ENSG00000160410 SHKBP1 PP203|Sb1 SH3KBP1 binding protein 1 protein-coding 2.139 1.292 1.813 0.915 1.340 0.547 0.616 0.489 0.170 0.475 0.242 0.716 8.769 1.983 0.147 0.847 0.917 1.291 1.781 1.871 1.289 2.224 0.788 1.588 1.766 1.443 1.912 1.987 2.924 1.869 1.157 0.622 0.798 0.632 0.525 1.452 2.800 1.455 0.820 1.009 1.341 0.089 0.390 0.616 0.716 0.478 0.914 0.278 0.908 164 chr1 164654500 164709535 + 0 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 61861 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 1.350 nan 1.380 0.283 0.427 0.207 0.675 0.467 0.096 0.256 0.247 0.394 0.505 0.048 0.108 0.619 0.723 0.883 2.507 0.529 nan 1.346 0.489 0.191 0.233 2.779 3.369 0.917 nan 0.492 0.342 0.532 0.589 0.460 0.489 0.602 0.989 1.173 0.814 0.094 0.374 0.078 0.816 0.675 0.394 0.071 0.189 0.126 0.353 423 chr11 130180894 130194323 + 0 NA Intergenic L1M2|LINE|L1 -3001 NM_001301098 29068 Hs.721470 NM_014155 ENSG00000196323 ZBTB44 BTBD15|HSPC063|ZNF851 zinc finger and BTB domain containing 44 protein-coding 1.174 nan 1.200 1.437 1.531 0.823 0.754 0.222 0.024 0.778 0.544 1.452 nan 1.064 0.130 3.679 3.930 1.323 1.695 1.760 1.824 1.961 0.702 2.608 2.707 1.081 1.536 1.837 2.379 2.014 2.230 4.195 6.362 1.461 1.318 1.505 2.247 1.283 0.816 0.940 1.386 0.403 1.021 0.754 1.452 0.101 0.584 3.432 0.581 693 chr16 15236954 15248828 + 0 NA Intergenic Intergenic 5968 NR_037466 100500852 NR_037466 ENSG00000264115 MIR3180-4 mir-3180-4 microRNA 3180-4 ncRNA 1.889 1.575 nan 2.098 2.213 1.122 1.981 0.969 0.354 1.106 0.540 1.425 2.871 1.771 0.152 1.565 2.400 0.526 0.743 1.437 1.396 2.531 0.928 1.913 1.889 1.096 1.542 5.084 6.535 nan 1.537 1.011 1.920 0.966 0.973 0.995 1.336 1.239 0.811 0.693 1.302 0.363 0.812 1.981 1.425 0.525 3.124 0.871 0.438 887 chr18 53244058 53258564 + 0 NA intron (NM_001330604, intron 3 of 19) intron (NM_001330604, intron 3 of 19) 2039 NM_001306207 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding nan 0.858 0.919 1.315 2.518 1.426 3.358 1.353 0.045 1.267 0.907 2.915 3.429 3.939 0.126 2.271 3.131 4.274 3.993 8.036 6.297 10.368 4.541 6.112 6.151 2.388 3.008 1.902 2.741 2.817 3.388 2.164 3.359 6.051 5.446 1.831 1.949 nan 2.724 0.665 1.907 1.558 2.209 3.358 2.915 0.622 3.803 1.802 0.835 1041 chr2 66908646 66930234 + 0 NA intron (NR_110156, intron 5 of 5) intron (NR_110156, intron 5 of 5) 10919 NR_110265 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 1.220 0.723 nan 0.130 0.792 0.371 0.131 0.125 0.052 0.255 0.175 0.277 0.576 0.066 0.107 1.030 0.937 4.953 4.687 0.437 0.543 nan 0.278 0.557 0.528 0.436 0.612 0.646 0.505 0.906 0.488 0.846 2.724 0.647 0.522 1.036 2.598 0.333 0.325 0.064 0.127 0.185 0.184 0.131 0.277 0.032 0.047 0.870 1.642 1094 chr2 200294981 200328702 + 0 NA intron (NR_134967, intron 2 of 4) intron (NR_134967, intron 2 of 4) 10978 NR_134967 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 0.836 nan 0.904 4.319 1.720 0.946 1.295 0.413 0.100 0.767 0.617 1.090 5.354 0.503 0.085 0.626 0.579 1.108 1.062 3.744 3.100 0.337 0.136 1.054 1.055 1.233 1.713 1.625 2.233 0.585 0.484 0.535 0.874 1.789 2.391 0.738 1.128 1.041 0.575 0.033 2.853 0.488 1.103 1.295 1.090 0.130 1.263 0.264 0.247 227 chr1 231813275 231836453 + 0 NA intron (NM_001164556, intron 1 of 4) intron (NM_001164556, intron 1 of 4) 62303 NM_001164544 27185 Hs.13318 NM_018662 ENSG00000162946 DISC1 C1orf136|SCZD9 disrupted in schizophrenia 1 protein-coding 1.755 3.230 3.496 2.976 1.530 0.834 1.644 0.220 0.083 0.392 0.224 0.294 6.613 0.046 0.091 0.420 0.213 2.062 2.642 1.680 1.546 nan 3.095 0.222 0.278 0.664 0.979 nan 1.201 1.458 1.825 0.112 0.137 0.563 0.821 0.493 1.061 nan 0.735 0.283 0.158 0.119 2.354 1.644 0.294 0.826 0.729 0.017 0.165 1624 chr8 1770887 1817308 + 0 NA intron (NM_001308153, intron 3 of 29) intron (NM_001308153, intron 3 of 29) 21955 NM_001308153 9639 Hs.98594 NM_014629 ENSG00000104728 ARHGEF10 GEF10|SNCV Rho guanine nucleotide exchange factor 10 protein-coding 0.699 0.760 0.572 0.862 0.735 0.407 0.399 0.272 0.062 0.417 0.346 7.502 0.149 0.486 0.124 0.536 0.801 0.634 0.834 3.356 3.233 2.668 1.062 0.587 0.602 0.198 0.324 0.338 0.473 nan 0.423 0.312 0.442 0.638 0.568 0.315 0.511 0.819 0.622 0.336 0.437 0.102 0.015 0.399 7.502 0.065 0.201 0.121 0.162 1719 chr9 14173191 14187072 + 0 NA intron (NM_001190737, intron 2 of 10) intron (NM_001190737, intron 2 of 10) 670 NM_001282787 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding nan nan 1.311 0.646 0.860 0.507 0.193 0.383 0.081 0.802 0.605 0.383 1.413 0.102 0.115 0.245 0.174 3.351 7.654 0.465 0.518 2.316 0.687 0.177 0.163 7.595 9.337 0.753 0.817 0.262 0.116 0.257 0.328 1.864 2.912 0.232 0.534 2.678 1.296 0.534 0.084 0.522 0.097 0.193 0.383 0.034 0.051 0.043 0.035 1052 chr2 113031846 113037059 + 0 NA intron (NM_198581, intron 1 of 11) intron (NM_198581, intron 1 of 11) 1274 NM_198581 376940 Hs.190477 NM_198581 ENSG00000188177 ZC3H6 ZC3HDC6 zinc finger CCCH-type containing 6 protein-coding 4.926 nan 4.443 4.801 5.599 3.072 4.957 3.050 0.422 2.072 1.025 6.154 nan 3.197 0.159 6.524 5.056 5.932 7.825 10.811 nan 7.933 6.128 16.056 16.126 4.257 5.100 7.350 12.142 8.184 8.435 4.643 6.329 3.576 3.292 9.478 6.992 2.236 1.263 4.718 2.397 0.584 1.935 4.957 6.154 1.606 2.767 1.862 2.873 126 chr1 153933991 153941791 + 0 NA intron (NM_001271960, intron 1 of 4) AluSg|SINE|Alu -1774 NM_001271961 27173 Hs.7854 NM_014437 ENSG00000143570 SLC39A1 ZIP1|ZIRTL solute carrier family 39 member 1 protein-coding 7.173 4.718 7.865 4.489 3.974 2.062 5.106 2.949 0.523 3.491 1.736 4.316 17.815 6.827 0.184 6.939 6.672 8.175 12.981 10.410 nan 6.112 2.379 7.618 8.092 5.538 6.716 7.220 11.920 5.477 4.790 7.337 12.040 5.701 6.978 6.271 8.655 3.897 1.682 4.209 7.639 1.635 3.232 5.106 4.316 1.305 5.206 6.039 2.589 1635 chr8 42574223 42601728 + 0 NA intron (NM_000749, intron 5 of 5) intron (NM_000749, intron 5 of 5) 35413 NM_000749 1142 Hs.654576 NM_000749 ENSG00000147432 CHRNB3 - cholinergic receptor nicotinic beta 3 subunit protein-coding 0.703 nan 0.669 0.130 0.324 0.140 0.343 0.098 0.147 0.125 0.122 0.800 0.385 0.067 0.117 0.403 0.405 0.384 0.855 1.379 1.534 1.453 0.498 0.287 0.315 0.178 0.265 0.271 0.287 1.315 1.128 0.163 0.211 0.145 0.141 0.718 2.106 0.798 0.725 0.061 2.781 0.052 0.058 0.343 0.800 0.081 0.100 0.050 0.530 861 chr18 42255320 42264278 + 0 NA promoter-TSS (NM_001130110) promoter-TSS (NM_001130110) -339 NM_001130110 26040 Hs.435458 NM_015559 ENSG00000152217 SETBP1 MRD29|SEB SET binding protein 1 protein-coding nan 2.544 0.842 3.367 3.183 1.571 9.074 1.480 0.109 1.486 0.889 4.615 8.180 0.072 0.057 3.740 4.937 3.429 4.451 9.687 7.684 3.310 1.537 0.103 0.074 1.892 2.595 1.986 3.535 4.722 5.698 1.524 3.794 5.330 4.665 0.697 nan 4.659 2.312 4.332 1.340 2.287 3.590 9.074 4.615 1.560 1.700 1.907 0.551 1423 chr5 134868635 134883280 + 0 NA Intergenic Intergenic -4318 NM_006161 4762 Hs.248149 NM_006161 ENSG00000181965 NEUROG1 AKA|Math4C|NEUROD3|bHLHa6|ngn1 neurogenin 1 protein-coding 1.617 0.961 nan 0.132 0.341 0.131 0.378 0.055 0.011 0.043 0.062 0.606 0.746 0.081 0.104 0.371 0.308 0.406 0.558 0.734 0.974 0.788 0.285 0.203 0.297 0.523 0.846 0.156 0.174 3.609 3.132 0.272 0.252 0.248 0.143 3.457 7.025 0.248 0.321 0.129 1.264 0.020 0.302 0.378 0.606 0.153 0.028 0.048 3.897 1439 chr5 172190510 172206044 + 0 NA promoter-TSS (NM_004417) promoter-TSS (NM_004417) -74 NM_004417 1843 Hs.171695 NM_004417 ENSG00000120129 DUSP1 CL100|HVH1|MKP-1|MKP1|PTPN10 dual specificity phosphatase 1 protein-coding 2.369 3.177 2.545 1.899 1.398 0.807 1.433 2.098 0.302 1.115 0.555 3.267 5.457 2.292 0.146 1.690 2.621 3.422 nan 3.898 3.098 3.261 2.360 3.195 3.285 2.267 nan 2.812 5.086 2.750 3.052 0.961 1.707 2.000 2.316 2.002 2.069 1.381 1.046 0.744 2.062 0.248 1.119 1.433 3.267 0.760 1.929 0.491 0.443 1323 chr4 50249 55477 + 0 NA promoter-TSS (NM_001039127) promoter-TSS (NM_001039127) -316 NM_182524 152687 Hs.709469 NM_182524 ENSG00000272602 ZNF595 - zinc finger protein 595 protein-coding 3.250 2.168 3.216 1.638 2.126 1.013 1.110 1.822 0.589 2.748 1.578 4.189 0.752 2.028 0.332 4.257 3.946 9.839 14.322 1.919 2.146 nan 1.504 2.709 2.509 3.600 5.365 2.056 3.203 1.734 0.850 1.444 2.087 0.296 0.535 1.019 1.268 nan 2.059 0.510 1.284 0.108 0.531 1.110 4.189 0.489 3.050 0.516 0.280 997 chr19 56158516 56170395 + 0 NA promoter-TSS (NM_007279) promoter-TSS (NM_007279) -961 NM_007279 11338 Hs.528007 NM_007279 ENSG00000063244 U2AF2 U2AF65 U2 small nuclear RNA auxiliary factor 2 protein-coding 4.477 2.702 4.183 3.452 6.261 3.728 2.940 1.873 0.231 2.190 1.294 3.869 5.196 4.499 0.161 7.162 7.770 4.258 6.412 8.458 9.182 6.157 5.358 6.480 6.972 4.977 6.039 5.631 8.828 9.642 8.583 5.953 9.196 5.058 6.314 6.702 6.164 3.707 1.821 4.055 5.086 1.483 2.635 2.940 3.869 1.668 2.459 3.219 2.869 1746 chr9 110915689 110931931 + 0 NA Intergenic Intergenic -671809 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 0.664 0.655 nan 0.254 0.654 0.307 0.234 0.226 0.010 0.087 0.090 0.195 0.362 0.026 0.058 1.791 2.178 4.150 2.791 0.326 0.405 0.877 0.293 8.399 8.582 0.080 0.166 0.368 nan 0.430 0.190 3.114 3.641 0.261 0.270 0.103 0.188 nan 0.549 0.027 0.049 0.030 0.062 0.234 0.195 0.114 0.082 3.276 0.031 188 chr1 183964108 183979315 + 0 NA intron (NM_001303421, intron 1 of 11) intron (NM_001303421, intron 1 of 11) 35193 NM_001303420 23127 Hs.387995 NM_015101 ENSG00000198756 COLGALT2 C1orf17|GLT25D2 collagen beta(1-O)galactosyltransferase 2 protein-coding nan nan 2.287 0.115 0.234 0.105 0.228 0.302 0.083 0.119 0.186 0.032 0.312 0.186 0.121 0.629 0.523 0.528 0.778 0.353 nan 0.173 0.063 nan 0.343 4.602 5.158 0.409 0.373 0.407 0.221 0.384 0.552 0.214 0.251 0.584 nan 0.511 0.530 0.042 0.177 0.056 0.063 0.228 0.032 0.051 0.060 0.065 0.311 143 chr1 155930529 155959483 + 0 NA intron (NM_001162384, intron 1 of 21) intron (NM_001162384, intron 1 of 21) 2960 NM_004723 9181 Hs.743352 NM_004723 ENSG00000116584 ARHGEF2 GEF|GEF-H1|GEFH1|LFP40|P40 Rho/Rac guanine nucleotide exchange factor 2 protein-coding nan nan 2.132 1.657 2.006 1.042 2.591 2.114 0.272 1.673 0.736 3.940 15.846 0.863 0.112 3.321 4.930 2.769 2.724 6.565 nan 2.055 0.805 3.003 3.223 1.789 2.674 2.852 2.797 2.385 2.160 4.435 5.876 1.575 1.837 1.941 5.599 1.603 0.759 2.031 1.233 0.736 0.950 2.591 3.940 0.594 1.455 2.886 1.307 1796 chrX 153188456 153200560 + 0 NA TTS (NM_003491) TTS (NM_003491) -2794 NM_001164741 393 Hs.701324 NM_001666 ENSG00000089820 ARHGAP4 C1|RGC1|RhoGAP4|SrGAP4|p115 Rho GTPase activating protein 4 protein-coding 2.530 2.783 2.500 1.726 5.765 2.965 3.284 0.554 0.132 0.908 0.583 2.857 5.816 1.560 0.050 4.494 6.984 2.609 2.909 5.026 4.607 3.756 1.313 3.944 4.166 1.174 1.667 4.473 4.487 3.145 3.500 1.817 4.135 1.593 1.840 1.608 2.927 1.467 0.679 2.639 3.761 0.534 1.905 3.284 2.857 0.695 1.807 2.830 0.905 329 chr11 34699383 34708255 + 0 NA Intergenic AT_rich|Low_complexity|Low_complexity 49808 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 0.547 2.036 nan 0.418 0.380 0.181 0.332 0.344 0.127 0.263 0.159 0.643 0.825 0.037 0.114 0.549 0.629 1.334 4.767 0.423 0.438 10.733 4.748 0.317 0.280 0.246 0.421 0.440 0.487 0.276 0.122 0.136 0.255 0.384 0.835 0.145 nan 0.456 0.296 0.287 0.101 0.054 0.081 0.332 0.643 0.065 0.103 0.022 0.096 1079 chr2 175618396 175637833 + 0 NA intron (NM_001039523, intron 1 of 9) intron (NM_001039523, intron 1 of 9) 1086 NM_001039523 1134 Hs.434479 NM_000079 ENSG00000138435 CHRNA1 ACHRA|ACHRD|CHRNA|CMS1A|CMS1B|CMS2A|FCCMS|SCCMS cholinergic receptor nicotinic alpha 1 subunit protein-coding 1.565 0.868 2.770 0.140 0.326 0.144 0.164 0.207 0.041 0.082 0.150 0.475 0.505 0.050 0.058 0.420 0.398 0.226 0.295 1.155 1.235 0.683 0.205 0.290 0.359 0.952 1.208 1.461 1.969 2.760 2.449 0.163 0.233 0.124 0.127 2.254 6.671 0.518 0.422 0.245 0.174 0.020 0.874 0.164 0.475 0.257 0.152 0.045 1.849 831 chr17 78537794 78630349 + 0 NA intron (NM_001163034, intron 1 of 29) intron (NM_001163034, intron 1 of 29) 65446 NM_001163034 57521 Hs.133044 NM_020761 ENSG00000141564 RPTOR KOG1|Mip1 regulatory associated protein of MTOR complex 1 protein-coding 1.181 1.069 1.232 3.309 0.473 0.268 0.679 0.158 0.136 0.325 0.225 0.657 1.020 0.112 0.122 0.583 0.740 0.345 0.431 1.287 1.381 0.623 0.210 0.382 0.384 nan 1.031 3.734 3.902 1.083 0.764 0.578 0.673 0.479 0.532 1.352 3.141 nan 0.940 0.220 0.751 0.077 0.172 0.679 0.657 0.085 1.350 0.177 1.311 1610 chr7 121941449 121950900 + 0 NA non-coding (NR_036484, exon 3 of 7) non-coding (NR_036484, exon 3 of 7) -1609 NM_001160264 389549 Hs.553970 NM_001024613 ENSG00000128610 FEZF1 FEZ|HH22|ZNF312B FEZ family zinc finger 1 protein-coding 3.048 0.761 1.121 0.445 0.908 0.524 1.041 0.071 0.089 0.215 0.240 1.565 2.666 0.034 0.099 6.024 8.588 2.392 2.197 2.390 1.492 1.711 0.608 0.481 0.421 0.073 0.172 0.390 0.568 1.612 1.729 0.247 0.463 3.411 2.115 0.390 0.765 0.811 0.495 0.041 0.624 1.041 1.677 1.041 1.565 1.385 0.054 0.031 0.146 719 chr16 84267913 84287380 + 0 NA Intergenic MLT1M|LTR|ERVL-MaLR -4290 NM_172347 93107 Hs.335877 NM_133490 ENSG00000168418 KCNG4 KV6.3|KV6.4 potassium voltage-gated channel modifier subfamily G member 4 protein-coding nan 0.598 0.819 0.179 0.258 0.148 0.317 0.066 0.094 0.057 0.059 0.183 0.232 0.095 0.071 0.340 0.339 0.173 0.207 0.294 0.356 0.604 0.251 0.239 0.279 0.079 0.191 0.327 0.504 4.459 3.627 0.167 0.204 0.124 0.126 1.270 3.678 0.361 0.462 0.066 0.082 0.015 0.049 0.317 0.183 0.279 0.033 0.030 0.762 1062 chr2 131588821 131611565 + 0 NA Intergenic Intergenic -74031 NM_015320 50649 Hs.469935 NM_015320 ENSG00000136002 ARHGEF4 ASEF|ASEF1|GEF4|STM6 Rho guanine nucleotide exchange factor 4 protein-coding nan 0.412 nan 0.034 0.422 0.141 0.521 0.059 0.078 0.040 0.081 0.142 0.898 0.100 0.078 1.127 1.873 0.563 0.757 0.491 0.460 1.353 0.289 0.455 0.490 0.219 0.368 1.345 nan 3.472 4.591 1.315 2.091 0.447 0.448 0.476 0.789 0.143 0.177 0.186 0.948 0.080 0.024 0.521 0.142 1.150 0.085 0.937 0.224 1662 chr8 93063521 93084477 + 0 NA intron (NM_001198633, intron 1 of 10) intron (NM_001198633, intron 1 of 10) 1192 NM_004349 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 translocation partner 1 protein-coding nan 0.955 3.387 0.330 0.364 0.153 0.898 1.699 0.122 0.150 0.099 0.846 0.695 0.018 0.092 0.309 0.156 0.218 nan 1.363 1.333 1.154 0.400 0.188 0.198 1.046 1.328 1.316 1.334 3.346 3.028 0.179 0.235 0.451 0.304 1.012 2.808 0.420 0.369 0.218 0.190 0.154 0.501 0.898 0.846 0.237 0.276 0.061 1.409 1160 chr20 44043778 44051182 + 0 NA intron (NR_047692, intron 2 of 10) intron (NR_047692, intron 2 of 10) 2773 NR_047693 51604 Hs.437388 NM_015937 ENSG00000124155 PIGT CGI-06|MCAHS3|NDAP|PNH2 phosphatidylinositol glycan anchor biosynthesis class T protein-coding nan 4.863 1.847 4.193 4.013 2.156 0.745 0.862 0.109 1.592 0.834 4.638 4.451 1.008 0.119 6.227 11.353 1.615 2.306 1.943 2.178 nan 3.764 3.389 3.575 1.433 2.252 4.909 6.416 nan 1.416 7.326 9.752 1.933 1.428 0.992 1.572 1.709 1.087 0.285 0.406 0.450 2.170 0.745 4.638 0.496 2.412 7.211 0.466 1212 chr21 45757814 45774079 + 0 NA Intergenic Intergenic -6661 NM_001271441 755 Hs.517331 NM_004928 ENSG00000160226 C21orf2 LRRC76|YF5/A2 chromosome 21 open reading frame 2 protein-coding nan 1.301 1.862 0.832 1.167 0.727 0.582 0.386 0.100 0.183 0.197 0.648 3.757 0.485 0.084 1.564 1.267 0.954 1.378 2.873 2.786 nan 0.807 2.109 2.214 0.672 nan 1.863 2.595 2.171 2.420 0.853 0.910 1.330 1.408 0.978 0.867 1.624 1.045 5.177 2.082 0.250 0.395 0.582 0.648 0.730 0.739 0.315 0.289 851 chr18 19836077 19856264 + 0 NA Intergenic Intergenic 96772 NM_005257 2627 Hs.514746 NM_005257 ENSG00000141448 GATA6 - GATA binding protein 6 protein-coding 0.530 0.714 0.724 0.161 0.462 0.295 0.273 0.082 0.064 0.078 0.077 0.077 0.275 0.022 0.095 0.401 0.269 0.247 0.485 0.268 0.312 4.133 1.222 0.281 0.294 0.078 0.177 0.093 0.085 0.375 0.169 0.205 0.196 0.096 0.191 0.208 0.517 0.379 0.421 0.019 0.044 0.019 0.031 0.273 0.077 0.019 0.025 0.054 0.067 98 chr1 68212490 68226797 + 0 NA intron (NM_018841, intron 2 of 3) intron (NM_018841, intron 2 of 3) 68783 NM_001199742 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 1.644 1.217 nan 0.141 0.621 0.304 2.630 2.860 0.302 0.404 0.188 0.526 1.928 0.574 0.100 0.442 0.422 3.975 6.990 0.895 0.932 1.746 0.573 0.589 0.524 nan nan 1.028 nan 0.464 0.247 0.373 0.604 1.337 1.422 0.459 1.069 1.290 0.756 0.959 2.281 0.414 0.729 2.630 0.526 0.549 0.276 0.305 0.235 1486 chr6 41038070 41043931 + 0 NA promoter-TSS (NM_001329685) promoter-TSS (NM_001329685) 293 NM_002505 4800 Hs.10441 NM_002505 ENSG00000001167 NFYA CBF-A|CBF-B|HAP2|NF-YA nuclear transcription factor Y subunit alpha protein-coding 6.222 4.438 5.186 7.667 6.904 3.311 6.341 4.080 0.302 3.138 1.539 8.212 11.943 5.389 0.185 5.664 7.617 5.974 9.456 10.748 9.276 13.777 7.942 16.150 16.807 4.587 5.815 12.844 17.092 7.323 7.872 2.695 5.675 7.057 7.294 7.230 8.634 4.024 1.928 5.815 5.287 1.257 3.530 6.341 8.212 1.638 3.464 2.312 3.120 294 chr11 690813 701229 + 0 NA promoter-TSS (NM_021008) promoter-TSS (NM_021008) -267 NM_001293634 10522 Hs.243994 NM_021008 ENSG00000177030 DEAF1 MRD24|NUDR|SPN|ZMYND5 DEAF1, transcription factor protein-coding 2.397 2.617 4.353 2.067 3.052 1.740 2.654 1.400 0.187 1.447 0.829 7.722 4.295 1.662 0.070 4.269 4.715 3.693 5.387 8.285 8.018 3.817 4.058 8.378 8.605 2.521 3.244 7.410 10.859 3.376 3.634 4.164 5.957 2.757 2.844 3.902 2.267 1.966 1.034 4.515 5.454 0.723 1.347 2.654 7.722 0.469 1.666 1.161 0.867 908 chr18 77152333 77166742 + 0 NA promoter-TSS (NM_001278675) promoter-TSS (NM_001278675) -737 NM_001278675 4772 Hs.534074 NM_006162 ENSG00000131196 NFATC1 NF-ATC|NF-ATc1.2|NFAT2|NFATc nuclear factor of activated T-cells 1 protein-coding nan nan 0.728 0.116 1.916 1.035 1.953 0.037 0.033 0.556 0.229 2.039 3.605 0.526 0.046 5.390 7.115 7.088 8.588 2.853 nan 4.482 3.210 1.215 1.273 0.145 0.148 0.265 nan 0.349 0.224 2.385 4.259 0.545 0.696 0.103 0.111 0.310 0.343 2.064 0.062 0.046 0.850 1.953 2.039 0.180 0.141 2.242 0.017 902 chr18 72599418 72618668 + 0 NA intron (NM_001146189, intron 6 of 6) intron (NM_001146189, intron 6 of 6) 266124 NM_001146190 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding nan nan 0.904 0.264 1.085 0.583 1.058 0.088 0.092 3.213 1.389 1.731 4.680 0.056 0.080 0.596 0.546 0.838 0.793 0.984 nan 1.307 0.417 0.446 0.439 0.336 0.566 3.491 nan 0.535 0.204 1.620 2.652 2.293 3.371 0.245 0.444 1.362 0.788 0.043 0.262 0.339 0.260 1.058 1.731 0.025 0.943 2.806 0.090 1306 chr3 181324158 181369386 + 0 NA intron (NR_075090, intron 2 of 2) MIRb|SINE|MIR 18650 NR_075089 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 0.828 1.159 0.657 0.210 0.607 0.259 0.195 0.114 0.175 0.388 0.323 0.166 0.468 3.340 0.128 0.262 0.193 0.152 0.296 0.521 0.632 3.298 1.543 0.169 0.132 0.198 0.378 0.526 0.577 0.778 0.336 0.100 0.152 0.196 0.222 0.146 0.249 0.656 0.575 0.027 0.102 0.033 0.244 0.195 0.166 0.013 0.016 0.044 0.070 1789 chrX 53109558 53124709 + 0 NA 3' UTR (NM_022117, exon 7 of 7) 3' UTR (NM_022117, exon 7 of 7) 5591 NM_022117 64061 Hs.136164 NM_022117 ENSG00000184205 TSPYL2 CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX TSPY like 2 protein-coding 1.733 1.732 0.823 1.361 2.685 1.398 0.825 0.677 0.109 0.808 0.498 0.999 2.837 1.774 0.067 0.750 0.974 1.505 2.161 3.233 2.474 2.597 0.798 1.937 1.955 0.810 1.210 2.345 3.256 2.134 2.042 0.828 1.551 1.598 1.655 1.457 2.707 1.065 0.528 0.831 0.617 0.339 0.707 0.825 0.999 0.337 2.645 0.653 0.459 1288 chr3 133190412 133198255 + 0 NA TTS (NM_003571) TTS (NM_003571) 15657 NR_135276 85003 Hs.659202 NR_135276 ENSG00000249993 BFSP2-AS1 - BFSP2 antisense RNA 1 ncRNA 1.698 nan nan 1.433 10.000 4.807 0.718 0.359 0.164 0.944 0.537 0.497 4.838 0.042 0.056 0.367 0.181 0.647 2.588 0.692 0.956 5.122 1.192 0.696 0.727 1.598 1.795 6.407 5.198 nan 1.751 0.192 0.272 0.720 1.409 0.984 3.165 1.821 1.053 6.813 5.258 0.255 0.140 0.718 0.497 1.857 3.172 0.051 0.962 283 chr10 115837677 115843646 + 0 NA Intergenic L1MC4a|LINE|L1 36855 NM_000684 153 Hs.99913 NM_000684 ENSG00000043591 ADRB1 ADRB1R|B1AR|BETA1AR|RHR adrenoceptor beta 1 protein-coding 0.467 nan 0.548 0.125 0.385 0.321 0.086 0.145 0.215 0.130 0.081 0.040 0.227 0.023 0.062 0.371 0.382 9.851 3.626 0.120 0.117 5.996 2.292 1.242 1.259 0.219 0.355 0.527 0.578 0.211 0.075 0.186 0.188 0.119 0.201 0.164 0.220 0.303 0.346 0.009 0.057 0.032 0.025 0.086 0.040 0.033 0.068 0.049 0.046 472 chr12 53885017 53896517 + 0 NA intron (NM_006301, intron 1 of 14) MIRb|SINE|MIR 2677 NM_001193511 7786 Hs.713539 NM_006301 ENSG00000139625 MAP3K12 DLK|MEKK12|MUK|ZPK|ZPKP1 mitogen-activated protein kinase kinase kinase 12 protein-coding nan 2.675 1.794 2.129 2.776 1.412 3.153 1.589 0.295 1.254 0.604 2.658 8.245 3.210 0.103 nan 4.475 2.889 4.068 5.328 nan 7.584 3.494 3.523 3.674 2.263 nan 5.140 nan 4.373 4.345 1.093 1.983 4.466 5.218 2.381 3.708 3.452 1.638 1.014 3.071 1.040 0.879 3.153 2.658 1.149 1.871 0.802 0.827 367 chr11 67210095 67221559 + 0 NA Intergenic Intergenic -4059 NM_001300896 57010 Hs.143036 NM_145200 ENSG00000175544 CABP4 CRSD|CSNB2B calcium binding protein 4 protein-coding nan 1.670 2.178 2.244 1.583 0.866 0.894 0.612 0.199 0.668 0.394 2.455 2.591 1.050 0.140 1.637 2.486 1.243 1.581 2.174 2.242 4.176 1.437 1.862 2.034 0.982 1.478 4.283 4.436 1.045 0.720 1.153 1.259 0.832 0.814 0.642 0.870 1.607 0.901 0.783 0.971 0.141 0.579 0.894 2.455 0.619 2.701 0.397 0.420 384 chr11 78166495 78188647 + 0 NA intron (NM_024678, intron 10 of 13) AluSx3|SINE|Alu -36689 NR_120564 101928865 Hs.407574 NR_120564 ENSG00000251323 LOC101928865 - uncharacterized LOC101928865 ncRNA nan 0.722 0.931 0.912 0.386 0.195 0.208 0.113 0.107 0.742 0.325 0.486 0.297 0.130 0.102 1.759 1.972 0.511 0.433 0.597 0.770 4.663 1.906 1.385 1.181 0.523 0.706 1.111 1.295 0.442 0.218 0.325 0.817 1.093 1.069 0.254 0.783 1.091 0.756 0.073 0.107 0.179 0.418 0.208 0.486 0.097 0.110 0.201 0.131 1766 chr9 135142234 135148411 + 0 NA intron (NM_015046, intron 24 of 25) intron (NM_015046, intron 24 of 25) 85050 NM_015046 23064 Hs.460317 NM_015046 ENSG00000107290 SETX ALS4|AOA2|SCAR1|bA479K20.2 senataxin protein-coding nan 1.145 1.193 0.617 0.454 0.363 0.645 0.283 0.103 0.231 0.325 0.345 0.776 0.246 0.103 0.413 0.239 0.934 1.804 0.967 0.919 nan 0.248 1.600 1.591 0.594 0.820 2.271 2.737 1.155 0.720 0.223 0.204 1.317 9.326 0.523 0.947 0.942 0.411 0.449 0.088 0.062 0.063 0.645 0.345 0.330 0.870 0.032 0.179 1699 chr8 145650810 145672313 + 0 NA promoter-TSS (NR_106953) promoter-TSS (NR_106953) -559 NR_106953 102466271 NR_106953 ENSG00000276598 MIR6893 hsa-mir-6893 microRNA 6893 ncRNA 3.343 1.540 nan 3.219 2.322 1.350 1.650 0.865 0.428 0.487 0.263 2.970 4.929 1.289 0.104 1.674 1.884 1.952 2.903 nan 4.820 nan 0.877 4.061 4.357 1.160 1.829 2.122 2.945 1.482 1.480 1.883 3.064 1.036 1.250 1.614 2.083 1.668 0.719 3.373 2.291 0.341 0.913 1.650 2.970 0.465 1.655 1.295 0.823 1093 chr2 200167115 200177852 + 0 NA intron (NM_001172509, intron 10 of 10) intron (NM_001172509, intron 10 of 10) 150336 NR_134967 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 0.900 nan 0.887 1.692 4.464 2.150 1.524 0.136 0.149 0.762 0.545 3.885 1.807 0.082 1.017 0.900 0.283 0.361 8.228 7.764 1.979 0.455 0.408 0.510 1.149 1.445 4.325 5.052 1.173 1.354 0.451 0.694 0.925 1.256 1.076 2.628 1.889 0.935 0.069 1.795 0.265 1.018 1.524 3.885 0.358 1.716 0.425 0.439 193 chr1 199880768 199885514 + 0 NA Intergenic Intergenic -113589 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 0.620 nan 0.948 0.220 0.312 0.169 0.239 0.140 0.171 0.068 0.219 0.151 0.284 0.023 0.104 0.397 0.452 11.436 3.283 0.357 0.570 0.141 0.065 1.027 1.094 0.280 nan 0.425 0.375 0.240 0.104 0.151 0.278 0.106 0.138 0.222 0.296 0.271 0.354 0.047 0.052 0.020 0.069 0.239 0.151 0.081 0.063 0.085 520 chr12 125396285 125426483 + 0 NA Intergenic Intergenic 11291 NR_049820 100847004 NR_049820 ENSG00000265345 MIR5188 mir-5188 microRNA 5188 ncRNA 2.702 3.004 2.228 1.829 3.821 2.201 2.372 1.827 0.406 1.543 1.102 2.296 7.301 4.356 0.190 2.818 4.390 2.749 4.128 4.541 4.391 nan 3.195 5.292 5.578 2.706 3.482 5.219 8.518 3.593 3.513 2.296 4.295 2.748 3.306 2.662 4.479 3.117 1.734 2.948 3.032 0.476 0.926 2.372 2.296 0.551 2.311 2.113 1.270 658 chr15 67122537 67147751 + 0 NA Intergenic CpG 113709 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LOC102723481 - uncharacterized LOC102723481 ncRNA 0.770 0.790 nan 0.101 0.318 0.155 0.418 1.204 0.159 0.092 0.124 0.252 0.617 0.167 0.075 0.292 0.224 1.629 7.561 0.320 0.349 nan 0.143 0.302 0.260 0.336 0.657 0.249 0.316 0.584 0.353 0.318 0.352 0.183 0.274 0.203 0.287 0.364 0.321 0.044 0.077 0.045 0.063 0.418 0.252 0.050 0.093 0.049 0.049 971 chr19 47315643 47344461 + 0 NA Intergenic Intergenic 3909 NR_024258 100170220 Hs.541243 NR_024258 SNAR-E - small ILF3/NF90-associated RNA E snRNA 1.338 2.022 1.450 1.679 0.548 0.350 0.396 0.230 0.239 0.229 0.122 1.692 1.151 0.257 0.158 0.296 0.364 0.323 0.504 0.977 1.043 1.681 0.701 0.815 0.977 0.692 1.032 4.279 4.234 0.798 0.646 0.406 0.643 0.243 0.393 0.599 1.421 1.064 0.744 0.348 0.496 0.064 0.184 0.396 1.692 0.273 0.523 0.286 0.185 1038 chr2 60748293 60785299 + 0 NA intron (NM_138559, intron 2 of 4) AT_rich|Low_complexity|Low_complexity 13837 NM_022893 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 B-cell CLL/lymphoma 11A protein-coding 2.556 0.620 nan 1.090 1.178 0.558 1.564 0.075 0.037 0.964 0.615 0.698 2.784 0.138 0.110 1.037 1.126 4.756 5.213 4.915 3.977 nan 0.128 1.795 1.819 2.473 3.165 1.690 2.328 3.710 4.352 0.795 1.718 1.449 1.088 2.308 3.153 1.105 0.906 0.900 4.180 0.288 2.726 1.564 0.698 0.957 0.937 0.858 1.397 1104 chr2 208327532 208340732 + 0 NA Intergenic Intergenic -60484 NM_004379 1385 Hs.516646 NM_004379 ENSG00000118260 CREB1 CREB|CREB-1 cAMP responsive element binding protein 1 protein-coding 0.985 nan 1.634 0.523 1.143 0.559 1.074 0.255 0.185 0.426 0.313 0.707 3.137 0.197 0.070 0.433 0.471 0.432 0.604 0.389 0.388 0.290 0.105 0.596 0.740 4.758 5.236 0.528 0.529 0.683 0.633 0.277 0.347 1.425 1.491 0.503 1.160 0.747 0.320 1.793 0.366 0.528 0.232 1.074 0.707 0.162 0.622 0.046 0.131 1142 chr20 21583255 21604345 + 0 NA intron (NR_109880, intron 2 of 3) L1ME3C|LINE|L1 43138 NR_109880 101929625 Hs.542413 NR_109880 LINC01727 - long intergenic non-protein coding RNA 1727 ncRNA 0.825 1.102 nan 0.557 1.327 0.692 0.121 0.100 0.085 0.663 0.468 1.368 1.934 0.026 0.064 0.546 0.537 0.177 0.242 1.917 1.957 3.613 0.923 0.199 0.214 0.203 0.405 0.374 0.704 0.504 0.233 0.216 0.309 0.751 0.653 0.188 0.230 3.274 1.495 0.037 0.046 0.131 0.004 0.121 1.368 0.176 1.489 0.047 0.041 1021 chr2 24618493 24628531 + 0 NA Intergenic Intergenic -40115 NM_019595 50618 Hs.432562 NM_006277 ENSG00000198399 ITSN2 PRO2015|SH3D1B|SH3P18|SWA|SWAP intersectin 2 protein-coding 0.871 0.858 0.723 2.367 0.455 0.223 1.733 0.097 0.147 0.954 0.554 0.843 3.523 0.141 0.152 0.924 0.777 0.487 0.590 0.906 1.134 6.751 3.349 0.897 1.053 0.314 0.500 4.772 nan 0.626 0.376 0.836 0.988 0.711 0.876 0.233 0.462 3.607 1.747 0.097 0.570 0.086 0.134 1.733 0.843 0.048 0.665 0.729 0.099 579 chr14 29155589 29161560 + 0 NA Intergenic Intergenic 75951 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 (head to head) ncRNA 0.965 1.011 0.996 1.622 0.200 0.134 0.173 0.207 0.080 0.433 0.358 0.081 0.343 0.071 0.134 0.244 0.090 0.170 0.184 0.339 0.426 9.948 7.790 0.292 0.197 0.293 0.576 0.260 0.359 0.536 0.204 0.112 0.188 3.917 4.645 0.190 0.286 1.758 0.866 0.591 1.771 1.111 0.071 0.173 0.081 0.034 0.119 0.034 0.020 1061 chr2 122405458 122409406 + 0 NA promoter-TSS (NM_001207051) promoter-TSS (NM_001207051) -133 NR_037856 254128 Hs.712685 NR_037856 ENSG00000236859 NIFK-AS1 - NIFK antisense RNA 1 ncRNA 6.719 nan nan 6.996 6.060 3.291 4.307 3.502 0.573 2.490 1.828 5.332 13.808 3.921 0.124 6.335 7.848 7.513 9.204 8.232 6.713 11.301 4.546 21.710 24.502 5.816 7.252 8.991 14.460 12.256 11.527 3.685 7.768 3.949 3.679 9.362 11.110 2.977 1.570 4.125 3.696 1.030 4.213 4.307 5.332 1.937 4.297 4.147 4.039 207 chr1 205609163 205620258 + 0 NA Intergenic L2b|LINE|L2 -12710 NM_021795 2005 Hs.497520 NM_001973 ENSG00000158711 ELK4 SAP1 ELK4, ETS transcription factor protein-coding 1.712 1.495 1.122 0.204 0.850 0.360 0.668 0.285 0.158 0.254 0.326 0.977 0.396 0.058 0.108 0.483 0.450 0.544 0.713 1.957 1.980 0.585 0.305 nan nan 1.034 1.210 1.009 1.261 1.035 0.872 0.352 0.339 0.353 0.275 0.519 1.282 1.249 0.810 2.014 4.830 0.130 0.335 0.668 0.977 0.745 0.073 0.580 0.156 1316 chr3 189428521 189443463 + 0 NA intron (NM_001114978, intron 1 of 12) intron (NM_001114978, intron 1 of 12) -71457 NM_001114982 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 1.496 1.338 1.039 0.306 0.816 0.283 0.172 3.390 0.231 0.247 0.214 0.132 1.117 0.036 0.085 0.387 0.176 0.309 0.941 0.386 0.475 6.978 2.097 0.342 0.343 0.244 0.355 1.006 1.727 0.795 0.485 0.115 0.181 1.140 1.248 1.174 3.217 1.422 0.650 0.056 0.092 0.223 0.101 0.172 0.132 0.072 0.115 0.020 0.912 854 chr18 32922956 32928836 + 0 NA Intergenic Intergenic -1465 NM_006965 7572 Hs.514802 NM_006965 ENSG00000172466 ZNF24 KOX17|RSG-A|ZNF191|ZSCAN3|Zfp191 zinc finger protein 24 protein-coding nan 3.548 2.798 5.553 3.520 1.817 5.115 0.985 0.167 1.460 0.434 4.318 8.272 1.548 0.050 4.382 4.390 3.608 5.011 5.739 5.708 7.563 5.082 3.845 3.873 1.360 2.123 nan 17.303 3.153 3.100 1.534 2.063 5.566 6.760 2.873 2.333 8.717 4.782 4.144 3.062 0.993 1.670 5.115 4.318 0.657 2.348 0.893 0.715 1776 chr9 138969725 139014923 + 0 NA Intergenic Intergenic -5193 NM_144653 138151 Hs.112895 NM_144653 ENSG00000148411 NACC2 BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB NACC family member 2 protein-coding nan 2.742 3.219 1.939 2.387 1.330 1.861 0.985 0.252 0.692 0.465 2.906 4.349 0.727 0.081 1.024 1.663 1.330 2.934 4.946 4.194 nan 0.659 0.421 0.405 0.789 1.121 4.980 5.897 2.451 2.800 1.007 1.743 1.924 1.832 0.518 0.604 1.128 0.660 6.409 2.298 0.677 0.507 1.861 2.906 0.627 1.993 0.872 0.180 922 chr19 10981012 11010991 + 0 NA intron (NM_199141, intron 1 of 15) intron (NM_199141, intron 1 of 15) 13748 NM_199141 10498 Hs.323213 NM_199141 ENSG00000142453 CARM1 PRMT4 coactivator associated arginine methyltransferase 1 protein-coding 2.163 2.106 1.715 0.911 0.825 0.565 2.214 0.403 0.173 0.364 0.340 2.610 1.459 0.630 0.097 3.446 4.381 2.809 2.831 2.286 2.376 2.444 0.857 1.959 1.920 0.945 1.592 3.414 5.223 3.084 3.195 0.877 1.740 2.741 2.586 1.583 2.902 1.030 0.664 0.454 0.672 0.780 0.998 2.214 2.610 0.901 0.368 0.886 0.862 1554 chr7 14016132 14033062 + 0 NA intron (NM_004956, intron 5 of 13) intron (NM_004956, intron 5 of 13) 1542 NM_001163152 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding nan 2.544 nan 1.370 1.984 1.115 1.272 3.869 0.106 5.463 2.938 0.964 5.971 0.841 0.168 nan 0.574 0.376 0.436 3.011 2.684 3.295 1.127 2.002 1.992 5.571 6.313 2.783 4.382 1.130 0.985 0.121 0.133 3.387 3.611 0.286 0.415 1.492 0.852 0.750 0.985 0.780 0.711 1.272 0.964 0.149 2.492 0.023 0.051 1543 chr7 1703524 1711285 + 0 NA Intergenic CpG -41394 NM_001128636 392617 Hs.42896 NM_001128636 ENSG00000225968 ELFN1 PPP1R28 extracellular leucine rich repeat and fibronectin type III domain containing 1 protein-coding 1.277 0.555 2.096 0.351 0.436 0.129 1.056 0.134 0.062 0.081 0.109 1.778 nan 9.376 0.224 0.277 0.256 0.137 nan 4.178 3.230 nan 0.120 0.355 0.312 0.470 0.809 nan 3.609 0.896 0.920 0.123 0.087 0.097 0.169 0.551 1.757 0.171 0.171 0.553 0.134 0.012 0.082 1.056 1.778 0.352 0.273 0.039 0.126 1729 chr9 35769774 35779847 + 0 NA Intergenic Intergenic -17596 NM_003995 4882 Hs.78518 NM_000907 ENSG00000159899 NPR2 AMDM|ANPRB|ANPb|ECDM|GUC2B|GUCY2B|NPRB|NPRBi|SNSK natriuretic peptide receptor 2 protein-coding 1.060 nan 1.279 2.847 2.952 1.344 1.458 0.334 0.143 1.824 1.198 4.041 4.825 0.074 0.122 0.459 0.509 0.410 0.531 2.985 3.800 5.891 2.108 0.477 0.406 1.311 1.672 4.993 4.507 1.292 1.032 0.514 0.721 2.773 3.199 0.517 1.994 6.228 2.803 2.121 2.191 0.976 1.761 1.458 4.041 0.278 2.882 0.424 0.316 1046 chr2 74733211 74743627 + 0 NA Intergenic Intergenic -3177 NM_016170 3196 Hs.168586 NM_016170 ENSG00000115297 TLX2 HOX11L1|NCX T-cell leukemia homeobox 2 protein-coding nan nan 2.644 1.825 2.149 1.200 1.462 1.271 0.246 0.814 0.369 1.650 3.597 2.033 0.132 1.532 1.865 2.915 4.444 3.406 3.286 4.581 1.931 3.461 3.856 1.436 1.800 2.615 2.845 4.434 3.706 1.365 1.993 0.855 1.210 6.694 11.856 nan 0.807 1.641 0.799 0.248 4.571 1.462 1.650 1.107 0.971 0.532 5.567 2 chr1 1092222 1108141 + 0 NA Intergenic CpG -2303 NR_029639 406984 NR_029639 ENSG00000207730 MIR200B MIRN200B|mir-200b microRNA 200b ncRNA 1.503 nan 3.575 5.521 5.196 2.443 0.178 0.122 0.102 1.680 0.813 2.887 4.149 0.087 0.065 4.986 5.762 2.867 4.578 10.897 9.445 2.974 1.148 16.390 16.368 0.168 nan nan 8.027 nan 0.175 3.410 5.783 1.332 1.146 0.138 0.250 0.856 0.652 3.349 7.749 0.275 11.284 0.178 2.887 0.825 0.070 2.510 0.015 670 chr15 91190779 91210651 + 0 NA intron (NR_120372, intron 2 of 3) L1M5|LINE|L1 -2750 NR_120371 101929765 Hs.615348 NR_120371 ENSG00000245479 LINC01585 - long intergenic non-protein coding RNA 1585 ncRNA nan nan nan 0.300 0.956 0.531 0.533 0.493 0.106 0.205 0.180 0.956 0.980 0.420 0.066 2.359 3.168 0.821 1.442 0.667 0.704 nan 0.408 1.335 1.433 0.313 0.455 1.456 2.001 nan 0.534 5.253 5.734 0.307 0.210 0.252 nan 0.934 0.581 0.134 2.652 0.019 0.235 0.533 0.956 0.170 0.536 8.024 0.069 783 chr17 40426596 40442081 + 0 NA Intergenic MIRb|SINE|MIR -5227 NM_003152 6776 Hs.437058 NM_003152 ENSG00000126561 STAT5A MGF|STAT5 signal transducer and activator of transcription 5A protein-coding 2.086 1.910 nan 1.354 1.512 0.798 1.230 0.564 0.197 1.981 1.006 3.389 2.385 0.447 0.086 2.327 2.585 0.860 1.341 4.401 nan 3.314 1.157 2.950 3.065 0.946 1.396 3.296 nan 2.520 2.309 1.069 1.824 1.484 1.217 1.218 1.326 2.640 1.430 2.553 1.754 0.245 0.388 1.230 3.389 0.513 1.247 0.427 0.496 923 chr19 11028093 11054356 + 0 NA TTS (NM_138358) TTS (NM_138358) -1536 NM_024029 78992 Hs.164026 NM_024029 ENSG00000130733 YIPF2 FinGER2 Yip1 domain family member 2 protein-coding 1.447 1.894 1.813 1.242 0.941 0.533 0.585 0.305 0.153 0.586 0.372 1.385 2.282 0.351 0.078 0.973 1.136 1.370 1.891 1.721 1.804 4.096 1.853 1.454 1.593 0.682 1.066 4.490 4.854 1.358 0.973 0.487 0.731 0.943 1.296 0.680 1.379 1.523 0.824 0.974 0.728 0.264 0.328 0.585 1.385 0.275 0.700 0.218 0.227 1129 chr20 340965 364377 + 0 NA Intergenic Intergenic -8602 NM_021158 57761 Hs.516826 NM_021158 ENSG00000101255 TRIB3 C20orf97|NIPK|SINK|SKIP3|TRB3 tribbles pseudokinase 3 protein-coding 1.521 2.102 1.296 1.939 2.631 1.344 0.901 1.734 0.232 0.629 0.250 1.149 3.091 1.576 0.119 2.164 3.646 0.565 1.006 1.041 1.012 3.175 0.771 2.974 2.921 0.828 1.206 1.686 1.241 1.850 2.003 3.527 3.756 0.487 1.220 1.216 3.926 0.460 0.369 1.123 2.030 0.152 1.592 0.901 1.149 0.726 2.145 1.505 0.953 584 chr14 37124453 37162463 + 0 NA intron (NM_006194, intron 4 of 4) intron (NM_006194, intron 4 of 4) 16685 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 1.419 0.820 1.263 1.376 0.643 0.296 0.209 0.164 0.181 0.327 0.220 0.583 18.119 0.081 0.103 0.322 0.332 0.342 0.429 9.856 9.336 0.747 0.276 0.376 0.399 0.564 0.789 5.501 6.455 0.745 0.487 0.508 0.748 2.089 2.106 0.065 0.163 1.460 0.708 15.629 6.154 0.951 0.157 0.209 0.583 0.087 0.952 0.451 0.081 1358 chr4 185481825 185486293 + 0 NA Intergenic Intergenic 61967 NR_131967 105377586 Hs.338354 NR_131965 ENSG00000254233 LVCAT8 - liver cancer-associated transcript 8 ncRNA nan 0.613 nan 0.059 0.238 0.143 0.087 0.099 0.071 0.090 0.139 0.309 0.024 0.063 2.504 2.426 10.199 11.771 0.231 0.340 0.124 0.041 1.206 1.227 0.030 0.136 0.114 0.289 0.360 0.077 0.499 0.756 0.037 0.069 0.082 0.211 0.228 0.191 0.071 0.087 0.139 0.046 0.221 303 chr11 11861721 11867664 + 0 NA intron (NM_017944, intron 1 of 26) intron (NM_017944, intron 1 of 26) 1722 NM_017944 55031 Hs.577256 NM_017944 ENSG00000170242 USP47 TRFP ubiquitin specific peptidase 47 protein-coding 3.368 nan 5.020 5.037 3.369 2.068 2.905 1.128 0.162 2.537 1.298 6.779 10.177 2.460 0.063 nan 11.109 7.056 9.292 9.386 9.229 7.346 3.550 20.022 21.580 5.719 nan 5.699 8.215 6.279 7.217 6.009 11.331 4.948 5.402 4.717 3.647 2.950 nan 2.729 3.549 0.899 1.961 2.905 6.779 0.296 1.299 3.778 1.035 756 chr17 27319761 27348336 + 0 NA promoter-TSS (NM_001098635) promoter-TSS (NM_001098635) -590 NM_001290202 124925 Hs.21837 NM_178860 ENSG00000063015 SEZ6 BSRPC seizure related 6 homolog protein-coding nan nan nan 0.351 2.191 1.140 1.116 0.087 0.067 0.565 0.329 1.438 1.490 0.087 0.149 1.489 2.053 1.221 0.459 1.247 1.381 4.925 1.173 0.207 0.239 0.768 1.136 1.620 2.082 3.381 3.367 1.960 4.208 2.172 2.222 0.939 nan 2.139 1.157 2.075 0.856 0.745 0.272 1.116 1.438 0.290 0.461 2.375 0.632 1164 chr20 47892144 47900592 + 0 NA promoter-TSS (NR_003695) promoter-TSS (NR_003695) -482 NR_003695 100113393 Hs.711216 NR_003695 ENSG00000222365 SNORD12B - small nucleolar RNA, C/D box 12B snoRNA nan nan 2.918 3.866 3.261 1.528 3.119 2.847 0.366 1.722 0.778 3.488 8.084 4.051 0.107 8.524 7.344 3.741 5.272 5.119 4.599 6.477 2.837 7.094 7.351 3.093 4.429 5.751 6.327 nan 6.950 3.280 5.590 1.266 1.628 11.559 8.116 3.357 1.465 1.946 2.590 0.372 3.233 3.119 3.488 1.063 1.849 1.789 3.235 1109 chr2 219816417 219833803 + 0 NA exon (NM_003936, exon 1 of 1) exon (NM_003936, exon 1 of 1) 760 NM_003936 8941 Hs.158460 NM_003936 ENSG00000171450 CDK5R2 NCK5AI|P39|p39nck5ai cyclin dependent kinase 5 regulatory subunit 2 protein-coding nan 2.683 nan 2.605 2.446 1.246 2.781 0.056 0.080 1.862 0.837 3.275 6.943 0.517 0.101 2.796 4.500 0.119 0.282 2.982 2.266 4.466 1.372 0.140 0.142 1.581 2.281 5.324 nan 3.267 3.243 1.138 1.821 2.524 2.575 4.352 6.901 1.414 0.873 2.736 2.071 0.627 1.237 2.781 3.275 1.033 2.584 0.875 1.263 1246 chr3 18455902 18472899 + 0 NA intron (NM_001322874, intron 1 of 10) intron (NM_001322874, intron 1 of 10) 2429 NM_001195470 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding nan 1.318 2.029 0.883 1.520 0.604 0.399 0.189 0.047 1.034 0.525 1.180 2.879 0.058 0.061 2.534 2.567 1.001 1.235 3.129 2.611 1.747 0.544 1.558 1.651 0.104 0.168 1.466 1.562 1.197 1.362 3.103 5.400 1.600 1.554 0.652 1.130 1.424 0.795 0.036 1.074 0.499 2.716 0.399 1.180 0.399 1.071 3.115 0.524 251 chr10 3505334 3551109 + 0 NA intron (NR_131187, intron 1 of 1) intron (NR_131187, intron 1 of 1) 167334 NR_131187 105376360 Hs.212226 NR_131187 LOC105376360 - uncharacterized LOC105376360 ncRNA 0.375 1.014 0.599 0.156 0.505 0.270 0.870 2.684 0.347 0.134 0.072 0.298 0.420 6.356 0.198 0.764 0.861 1.660 4.843 0.246 0.366 2.260 1.461 0.155 0.181 0.113 0.193 0.413 0.666 0.124 0.056 0.168 0.237 0.227 0.462 0.135 0.198 0.460 0.408 0.012 0.107 0.048 0.031 0.870 0.298 0.030 0.031 0.041 0.038 315 chr11 17859456 17871599 + 0 NA intron (NM_012139, intron 10 of 10) MER5A|DNA|hAT-Charlie 108032 NM_001112741 3746 Hs.552896 NM_004976 ENSG00000129159 KCNC1 EPM7|KV3.1|KV4|NGK2 potassium voltage-gated channel subfamily C member 1 protein-coding 0.767 nan 2.849 0.450 0.330 0.100 0.469 0.148 0.093 0.310 0.144 0.171 0.539 0.018 0.091 nan 6.083 0.212 0.296 1.106 1.157 0.771 0.233 0.475 0.435 0.897 nan 0.348 0.592 0.779 0.895 0.341 0.342 0.860 1.203 0.274 0.477 0.651 nan 0.069 0.170 0.102 0.713 0.469 0.171 0.073 0.079 0.040 0.174 111 chr1 109395735 109409820 + 0 NA Intergenic Intergenic -1913 NR_049760 254268 Hs.729441 NM_152763 ENSG00000162641 AKNAD1 C1orf62 AKNA domain containing 1 protein-coding 1.720 nan nan 0.069 0.200 0.171 0.227 0.233 0.125 0.056 0.087 1.245 0.320 0.046 0.110 0.312 0.317 0.194 0.213 0.675 nan 0.457 0.215 0.326 0.338 1.425 1.920 nan nan 1.021 0.485 0.205 0.268 0.106 0.094 1.509 nan 0.320 0.365 0.039 0.120 0.013 4.017 0.227 1.245 0.318 0.073 0.183 2.718 1432 chr5 148922766 148932426 + 0 NA intron (NM_001025105, intron 2 of 10) AluSz|SINE|Alu 2298 NM_001271742 1452 Hs.529862 NM_001892 ENSG00000113712 CSNK1A1 CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975 casein kinase 1 alpha 1 protein-coding nan 3.366 2.789 3.260 4.341 2.211 1.705 2.030 0.261 1.676 0.749 4.370 9.152 4.248 0.133 3.366 2.806 7.259 9.375 5.254 5.219 4.799 2.640 6.877 7.633 3.295 4.256 6.221 10.392 6.818 5.677 3.840 6.708 3.364 5.229 3.093 4.513 2.051 0.880 2.003 3.383 0.957 1.733 1.705 4.370 0.666 1.637 2.141 1.314 380 chr11 77732550 77757875 + 0 NA intron (NM_001203261, intron 2 of 2) AluJo|SINE|Alu -10892 NM_023930 65987 Hs.709780 NM_023930 ENSG00000151364 KCTD14 - potassium channel tetramerization domain containing 14 protein-coding nan 1.832 1.208 0.991 1.210 0.595 1.611 1.005 0.287 0.848 0.425 2.035 3.603 0.232 0.133 0.665 1.473 0.484 1.043 4.338 4.700 2.494 0.903 0.877 1.031 2.650 3.522 1.607 2.097 0.996 0.951 0.418 0.488 3.102 3.224 0.359 0.716 2.543 1.450 2.997 0.369 0.516 0.235 1.611 2.035 0.399 1.475 0.075 0.127 595 chr14 57460922 57479977 + 0 NA Intergenic Intergenic 190548 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 2.931 nan 2.395 0.982 0.549 0.336 0.397 0.099 0.094 0.090 0.150 0.872 0.570 0.046 0.119 0.366 0.248 0.303 0.384 0.502 0.531 1.963 0.435 0.486 0.507 0.132 0.203 1.091 0.997 4.153 4.032 0.724 1.564 0.796 0.773 4.105 11.497 nan 0.567 0.041 0.095 0.114 0.674 0.397 0.872 0.132 0.096 1.474 2.068 795 chr17 46017364 46039572 + 0 NA TTS (NM_024320) TTS (NM_024320) 6775 NM_024320 79170 Hs.368260 NM_024320 ENSG00000167183 PRR15L ATAD4 proline rich 15 like protein-coding 1.313 2.672 nan 1.973 3.026 1.574 0.785 0.324 0.119 2.065 1.282 3.669 5.393 0.318 0.106 1.556 2.331 0.892 1.465 3.095 nan 4.436 1.282 3.266 3.598 0.906 1.439 7.930 nan 1.167 0.862 1.696 3.230 4.917 4.657 0.818 1.456 2.857 1.381 3.548 4.121 2.113 2.293 0.785 3.669 0.463 0.586 2.452 0.416 1631 chr8 37671209 37684334 + 0 NA intron (NM_032777, intron 2 of 18) MLT2C1|LTR|ERVL 23370 NM_032777 25960 Hs.274136 NM_032777 ENSG00000020181 ADGRA2 GPR124|TEM5 adhesion G protein-coupled receptor A2 protein-coding 1.158 0.574 nan 0.769 0.346 0.127 0.233 2.103 0.531 0.036 0.113 0.237 0.352 0.090 0.088 4.185 4.866 4.138 3.611 0.574 0.659 1.130 0.330 2.367 2.668 0.192 0.445 0.427 0.560 0.540 0.516 1.664 2.625 0.272 0.268 0.961 1.865 0.587 0.697 0.034 0.205 0.051 0.072 0.233 0.237 0.134 0.200 2.118 0.512 25 chr1 8012923 8028532 + 0 NA promoter-TSS (NM_001123377) promoter-TSS (NM_001123377) -987 NM_007262 11315 Hs.419640 NM_007262 ENSG00000116288 PARK7 DJ-1|DJ1|HEL-S-67p Parkinsonism associated deglycase protein-coding 2.079 nan 2.267 4.053 1.252 0.715 0.599 1.574 0.137 0.679 0.486 0.705 3.621 1.384 0.116 1.502 1.802 1.170 1.929 4.830 4.698 1.709 0.808 3.151 3.284 2.672 nan nan 8.671 nan 1.513 1.244 1.815 1.019 1.065 1.918 2.821 2.242 1.338 0.873 0.933 0.225 0.470 0.599 0.705 0.550 0.850 0.784 0.886 159 chr1 161166457 161173883 + 0 NA intron (NM_004550, intron 1 of 14) intron (NM_004550, intron 1 of 14) 1065 NM_004550 4720 Hs.173611 NM_004550 ENSG00000158864 NDUFS2 CI-49 NADH:ubiquinone oxidoreductase core subunit S2 protein-coding 6.396 nan 3.369 1.613 1.701 0.956 4.524 4.480 0.453 1.413 0.945 2.305 4.153 1.620 0.134 2.968 2.729 4.612 6.622 4.852 nan 8.025 3.823 3.155 3.318 7.615 8.809 3.302 nan 2.761 2.483 5.231 9.240 3.474 4.901 4.791 7.789 2.833 1.576 1.698 2.540 0.795 1.323 4.524 2.305 1.055 1.887 6.991 2.612 576 chr14 24546766 24565374 + 0 NA Intergenic Intergenic -2238 NM_006177 4901 Hs.652297 NM_006177 ENSG00000129535 NRL D14S46E|NRL-MAF|RP27 neural retina leucine zipper protein-coding nan 1.871 2.196 2.088 1.572 0.923 0.954 1.729 0.301 0.607 0.319 1.543 3.020 2.088 0.130 1.098 1.691 1.085 1.770 2.235 2.164 3.241 1.032 2.329 2.379 2.478 3.237 3.176 nan 8.474 7.663 1.284 2.076 1.620 1.390 1.429 5.224 1.473 0.804 3.493 2.033 0.544 1.693 0.954 1.543 0.477 1.081 1.118 3.604 1550 chr7 11335572 11384082 + 0 NA Intergenic LTR33|LTR|ERVL 346328 NR_033436 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding nan 1.055 nan 0.174 0.252 0.148 0.211 0.142 0.077 0.026 0.032 0.232 0.470 0.050 0.150 nan 0.280 0.594 0.456 0.472 0.557 0.251 0.104 14.739 16.024 0.951 1.352 0.372 0.352 0.333 0.169 0.144 0.266 0.271 0.358 0.341 0.604 0.588 0.508 0.078 0.109 0.072 0.070 0.211 0.232 0.108 0.104 0.055 0.117 1327 chr4 35462466 35472685 + 0 NA Intergenic L1MEc|LINE|L1 -778163 NR_122079 439933 Hs.591071 NR_122079 ENSG00000247193 LOC439933 - uncharacterized LOC439933 ncRNA 0.459 0.512 0.457 0.103 0.154 0.094 0.076 0.059 0.063 0.078 0.114 0.083 0.161 0.003 0.061 0.436 0.161 5.708 7.388 0.203 0.268 0.254 0.094 0.196 0.166 0.349 0.543 0.235 0.228 0.463 0.164 0.124 0.168 0.090 0.104 0.115 0.224 0.322 0.480 0.087 0.009 0.062 0.076 0.083 0.030 0.020 0.122 455 chr12 16735974 16768483 + 0 NA intron (NM_001243613, intron 3 of 5) intron (NM_001243613, intron 3 of 5) 6085 NM_001243611 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 0.885 3.263 0.824 0.784 0.383 0.252 0.469 0.083 0.044 3.489 2.439 0.332 15.188 0.060 0.116 0.286 0.206 4.814 5.936 nan 1.493 7.158 2.610 0.320 0.392 0.204 0.359 2.711 4.119 0.415 0.245 0.234 0.299 1.766 1.051 0.479 0.877 2.406 1.310 2.299 0.085 0.454 0.190 0.469 0.332 0.015 0.065 0.046 0.206 158 chr1 161122628 161130321 + 0 NA intron (NM_016406, intron 1 of 5) AluSx|SINE|Alu -2780 NM_001319848 27005 Hs.8015 NM_012475 ENSG00000143258 USP21 USP16|USP23 ubiquitin specific peptidase 21 protein-coding 5.352 nan 4.464 3.790 3.990 2.282 4.767 2.313 0.399 2.894 1.396 4.502 7.735 3.342 0.193 6.269 6.277 6.064 8.862 7.704 nan 8.123 5.502 7.501 7.636 4.879 5.942 7.164 nan 5.451 4.873 7.899 8.981 6.062 6.053 6.803 6.303 3.646 2.251 2.718 4.720 0.808 1.506 4.767 4.502 1.022 2.519 2.612 1.683 836 chr17 79668167 79681719 + 0 NA TTS (NM_002949) TTS (NM_002949) -4323 NM_001270953 1468 Hs.548187 NM_012140 ENSG00000183048 SLC25A10 DIC solute carrier family 25 member 10 protein-coding 3.622 3.401 3.778 3.160 3.935 1.919 3.231 1.465 0.378 2.459 1.417 2.256 5.060 2.190 0.136 5.617 6.278 4.207 5.579 3.999 3.675 6.360 1.985 5.046 4.972 nan 3.853 4.032 5.782 5.355 6.601 2.627 5.175 4.308 4.036 3.808 4.516 nan 1.261 1.052 2.053 1.353 1.237 3.231 2.256 0.753 3.078 0.926 1.480 429 chr12 6711332 6728256 + 0 NA Intergenic AluSp|SINE|Alu -3195 NM_001273 1108 Hs.162233 NM_001273 ENSG00000111642 CHD4 CHD-4|Mi-2b|Mi2-BETA|SIHIWES chromodomain helicase DNA binding protein 4 protein-coding 3.019 nan nan 5.592 3.417 1.784 3.618 0.944 0.142 1.676 0.969 4.111 5.823 1.139 0.119 2.409 3.086 1.497 1.945 nan 6.627 6.820 2.314 3.873 3.893 2.568 3.385 4.946 5.034 5.323 4.589 2.012 3.299 2.306 2.041 2.675 nan 1.773 0.774 2.964 4.004 0.717 3.105 3.618 4.111 2.350 1.168 2.483 2.464 1039 chr2 66652543 66665696 + 0 NA non-coding (NR_046438, exon 2 of 4) non-coding (NR_046438, exon 2 of 4) 1483 NR_046438 730198 Hs.526753 NR_046438 MEIS1-AS3 - MEIS1 antisense RNA 3 ncRNA 3.209 1.090 nan 1.992 4.828 2.146 2.401 1.539 0.220 1.438 1.105 2.272 7.681 1.158 0.118 1.276 2.096 3.701 5.144 4.809 4.273 nan 1.678 2.062 1.937 1.606 2.193 4.661 5.926 1.865 2.010 0.498 1.864 3.386 2.447 2.593 3.570 1.043 0.549 2.511 2.866 0.992 1.099 2.401 2.272 0.543 2.316 0.594 1.641 1415 chr5 90957633 90967532 + 0 NA Intergenic LTR33|LTR|ERVL -283392 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding nan 1.631 0.643 0.141 0.573 0.301 0.440 0.082 0.114 0.080 0.097 0.298 0.088 0.123 0.318 0.159 8.378 0.857 0.950 0.887 0.409 0.140 0.446 0.480 0.330 0.440 0.628 0.509 0.502 0.233 0.088 0.121 0.724 0.564 0.465 nan 0.399 0.359 0.099 0.961 0.087 0.024 0.440 0.039 0.238 0.030 0.187 793 chr17 44655266 44669798 + 0 NA Intergenic AluSz|SINE|Alu -5444 NM_001330244 51326 Hs.559259 NM_016632 ENSG00000185829 ARL17A ARF1P2|ARL17P1 ADP ribosylation factor like GTPase 17A protein-coding 3.544 3.000 nan 1.712 4.679 2.423 1.189 0.519 0.265 1.866 1.010 3.588 4.346 1.072 0.115 1.951 1.765 3.031 3.672 1.753 nan 3.289 0.967 14.356 14.590 2.016 2.741 2.650 nan 4.120 3.866 1.835 3.015 4.634 6.306 3.751 4.895 3.503 1.840 0.992 3.363 1.482 0.885 1.189 3.588 0.582 2.532 1.225 1.318 1634 chr8 38028543 38036280 + 0 NA intron (NR_045493, intron 1 of 3) AluSx1|SINE|Alu -1695 NM_001204878 9530 Hs.194726 NM_004874 ENSG00000156735 BAG4 BAG-4|SODD BCL2 associated athanogene 4 protein-coding 2.511 2.221 nan 9.212 2.901 1.472 1.637 1.653 0.292 1.395 0.804 3.250 5.879 2.877 0.181 3.892 3.685 3.592 5.744 5.926 5.317 4.379 1.678 6.959 7.425 2.763 3.271 2.819 4.082 4.120 3.851 1.369 3.818 2.389 3.091 3.542 4.164 2.885 1.316 1.534 2.084 0.601 0.656 1.637 3.250 0.701 1.950 1.113 1.562 597 chr14 61080488 61133626 + 0 NA TTS (NR_126480) TTS (NR_126480) 1123 NR_126480 104548971 NR_126480 SALRNA1 SAL-RNA1|XLOC_023166 senescence associated long non-coding RNA 1 ncRNA nan nan 1.718 2.484 1.859 1.057 2.643 0.825 0.190 0.219 0.195 4.532 2.441 0.436 0.132 0.744 0.791 0.777 1.092 8.036 6.987 0.858 0.260 nan 1.877 0.377 0.678 3.375 nan 1.471 1.342 1.004 2.000 0.915 0.806 0.245 0.565 0.988 0.715 4.756 5.948 0.133 3.475 2.643 4.532 0.348 0.444 1.030 0.097 694 chr16 18798763 18816612 + 0 NA intron (NM_015161, intron 3 of 5) intron (NM_015161, intron 3 of 5) 5005 NM_001313858 23204 Hs.634882 NM_015161 ENSG00000170540 ARL6IP1 AIP1|ARL6IP|ARMER|SPG61 ADP ribosylation factor like GTPase 6 interacting protein 1 protein-coding 2.382 1.496 nan 2.203 2.087 1.185 1.388 0.808 0.136 1.016 0.598 2.258 5.174 1.714 0.134 1.879 2.270 1.818 2.383 3.425 3.147 4.386 1.581 4.107 3.941 2.086 2.724 6.133 8.301 nan 3.468 1.658 2.739 2.020 2.803 2.447 3.320 1.941 0.973 1.584 0.919 0.477 1.065 1.388 2.258 0.556 0.904 0.568 1.448 1672 chr8 109983660 109991947 + 0 NA Intergenic Intergenic -111850 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 0.996 nan nan 0.124 0.266 0.232 0.266 0.097 0.078 0.057 0.059 0.030 0.821 0.052 0.089 0.248 0.253 0.160 0.334 0.411 0.430 10.281 3.275 0.665 0.549 0.410 nan 0.608 nan nan 0.358 0.089 0.206 0.326 0.328 0.595 nan 0.391 0.464 0.054 0.164 0.046 0.266 0.030 0.012 0.012 0.024 0.119 115 chr1 116378825 116386139 + 0 NA intron (NM_001111061, intron 1 of 1) intron (NM_001111061, intron 1 of 1) 851 NM_001111061 4808 Hs.46296 NM_005599 ENSG00000177551 NHLH2 HEN2|NSCL2|bHLHa34 nescient helix-loop-helix 2 protein-coding nan 1.185 5.554 0.175 0.183 0.065 0.210 0.082 0.087 0.063 0.145 0.115 2.225 0.060 0.135 0.455 0.404 0.355 0.573 6.260 nan 0.078 0.041 1.189 1.288 1.434 2.093 1.621 2.611 11.549 16.122 5.664 7.620 4.112 3.171 0.111 0.239 2.690 1.436 0.045 0.108 0.862 4.867 0.210 0.115 1.568 0.041 3.684 0.017 929 chr19 13129175 13173869 + 0 NA intron (NM_001271043, intron 2 of 10) intron (NM_001271043, intron 2 of 10) 16127 NM_001271043 4784 Hs.257970 NM_002501 ENSG00000008441 NFIX CTF|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2 nuclear factor I X protein-coding 2.405 1.135 5.354 0.534 1.592 0.829 1.639 1.679 0.231 0.252 0.192 1.781 0.590 0.397 0.066 2.550 3.984 1.603 3.971 2.181 2.398 1.453 0.464 0.464 0.535 2.025 2.922 1.465 1.384 1.301 0.905 1.065 1.880 0.920 1.245 0.567 0.814 2.138 1.113 5.093 1.104 0.380 0.414 1.639 1.781 0.875 0.446 0.908 0.147 1588 chr7 91509116 91526493 + 0 NA Intergenic SVA_F|Other|Other -7770 NM_006980 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding nan 1.033 nan 0.410 0.591 0.341 0.627 0.545 0.129 0.405 0.276 0.482 0.867 0.499 0.178 0.985 0.890 0.458 0.682 0.826 0.812 2.575 0.756 1.090 1.149 0.707 0.988 0.770 0.717 2.029 2.206 0.661 1.010 1.419 1.138 2.447 nan 1.316 0.986 0.232 0.359 0.180 0.186 0.627 0.482 0.186 0.264 0.404 1.618 1431 chr5 145786308 145794528 + 0 NA Intergenic Intergenic -36455 NM_001040006 10915 Hs.443465 NM_006706 ENSG00000113649 TCERG1 CA150|TAF2S|Urn1 transcription elongation regulator 1 protein-coding nan 0.720 0.634 0.086 0.207 0.194 0.047 0.073 0.019 0.037 0.113 0.029 0.273 0.066 0.089 0.397 0.657 0.194 0.256 0.153 0.274 0.125 0.074 0.047 0.107 0.306 0.508 0.185 0.220 0.395 0.172 0.205 0.276 0.655 0.159 0.158 0.194 0.401 0.365 0.021 0.033 0.023 4.339 0.047 0.029 0.024 0.024 0.072 0.046 911 chr19 788067 812123 + 0 NA intron (NM_031991, intron 2 of 13) AluSx1|SINE|Alu 2703 NM_031991 5725 Hs.172550 NM_002819 ENSG00000011304 PTBP1 HNRNP-I|HNRNPI|HNRPI|PTB|PTB-1|PTB-T|PTB2|PTB3|PTB4|pPTB polypyrimidine tract binding protein 1 protein-coding 1.977 1.345 2.790 1.355 1.568 0.874 1.655 0.782 0.227 0.677 0.457 1.730 2.519 1.117 0.097 1.075 1.136 2.742 4.117 2.291 2.258 0.992 0.536 2.525 2.388 1.051 1.663 1.226 nan 2.593 2.652 0.787 1.493 1.314 1.588 1.253 1.402 1.173 0.660 1.216 1.506 0.467 3.328 1.655 1.730 0.515 1.122 0.478 0.381 1451 chr6 5748311 5754668 + 0 NA intron (NM_006567, intron 6 of 6) intron (NM_006567, intron 6 of 6) -55984 NR_110842 101927950 Hs.571136 NR_110842 ENSG00000270174 LOC101927950 - uncharacterized LOC101927950 ncRNA 1.570 0.750 1.212 0.684 0.882 0.253 1.169 1.546 0.128 0.125 0.141 0.847 0.142 0.105 0.080 0.444 0.436 0.192 0.528 0.496 0.300 2.166 0.254 0.544 0.364 1.350 1.302 1.996 2.192 1.463 1.083 0.251 0.324 0.147 0.487 2.550 5.597 0.707 0.728 0.244 0.098 0.106 0.588 1.169 0.847 0.320 5.386 0.062 1.843 1497 chr6 45665921 45684717 + 0 NA Intergenic L2a|LINE|L2 230015 NR_045673 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 1.221 0.815 0.758 0.074 0.332 0.176 0.285 0.881 0.095 0.075 0.091 0.168 0.396 0.069 0.102 0.722 0.614 2.485 7.367 0.317 0.359 0.120 0.094 0.616 0.733 0.127 0.227 0.385 nan 0.477 0.210 0.776 1.224 0.082 0.067 0.424 0.808 0.567 0.652 0.083 0.132 0.021 0.038 0.285 0.168 0.010 0.071 0.603 0.285 692 chr16 14722421 14734526 + 0 NA intron (NM_001330500, intron 1 of 5) FLAM_C|SINE|Alu 1805 NM_001330500 51283 Hs.435556 NM_016561 ENSG00000103429 BFAR BAR|RNF47 bifunctional apoptosis regulator protein-coding 3.258 2.122 nan 2.841 2.388 0.913 1.859 1.412 0.360 1.615 0.667 1.918 5.018 1.789 0.113 2.507 2.120 1.963 3.091 2.025 2.035 6.188 2.408 7.460 7.279 2.070 2.836 3.511 5.287 nan 2.153 1.533 2.296 2.147 2.881 3.628 4.832 1.937 0.957 1.004 2.051 0.362 1.003 1.859 1.918 1.108 0.972 0.751 2.539 501 chr12 107366692 107373783 + 0 NA TTS (NM_025198) TTS (NM_025198) 10707 NM_025198 80298 Hs.5009 NM_025198 ENSG00000120832 MTERF2 MTERFD3|mTERFL mitochondrial transcription termination factor 2 protein-coding 1.173 0.855 nan 0.535 0.355 0.277 0.322 1.024 0.182 0.312 0.137 0.202 0.599 0.123 0.122 0.375 0.264 0.422 0.734 0.472 0.683 1.530 0.578 0.446 0.386 1.974 2.919 2.120 2.049 0.512 0.215 0.167 0.321 4.880 7.582 0.397 0.626 1.447 0.896 0.101 0.122 1.612 0.101 0.322 0.202 0.054 1.351 0.122 0.122 1673 chr8 110141765 110149386 + 0 NA Intergenic Intergenic 45922 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding nan nan 1.114 0.239 0.344 0.105 0.297 0.152 0.064 0.041 0.140 0.063 0.576 0.015 0.114 0.679 0.279 1.720 0.781 0.650 0.492 nan 0.452 19.097 nan 3.798 5.594 0.986 1.006 0.458 0.186 0.272 0.437 0.175 0.145 0.171 0.367 0.493 0.497 0.036 0.326 0.037 0.092 0.297 0.063 0.053 0.219 0.049 438 chr12 7068276 7083091 + 0 NA TTS (NR_003010) TTS (NR_003010) 1086 NR_003010 677777 Hs.689636 NR_003010 ENSG00000238795 SCARNA12 U89 small Cajal body-specific RNA 12 ncRNA 3.219 nan nan 11.413 5.688 2.999 1.986 0.329 0.130 4.280 1.817 4.916 10.184 1.848 0.184 3.000 3.163 5.529 8.279 nan 8.912 17.019 7.002 13.684 14.440 2.458 3.386 6.012 8.622 3.105 3.313 3.440 5.450 8.434 8.891 3.894 nan 2.340 1.267 5.407 4.745 1.655 4.663 1.986 4.916 12.876 1.275 2.279 1.179 1579 chr7 55494814 55509411 + 0 NA TTS (NM_018697) TTS (NM_018697) 68971 NM_018697 55915 Hs.595384 NM_018697 ENSG00000132434 LANCL2 GPR69B|TASP LanC like 2 protein-coding nan 1.882 1.412 0.820 0.467 0.320 0.313 0.165 0.121 0.973 0.386 1.780 1.794 0.129 0.131 0.574 0.680 0.344 0.404 4.300 3.537 2.100 0.570 0.146 0.232 0.383 0.627 3.648 5.076 0.445 0.252 0.273 0.344 0.160 0.139 0.402 0.736 3.540 1.848 1.221 0.309 0.033 0.130 0.313 1.780 0.061 2.162 0.048 0.175 523 chr13 20354206 20357988 + 0 NA intron (NR_044998, intron 1 of 7) intron (NR_044998, intron 1 of 7) 1062 NR_044998 55269 Hs.213198 NM_001042414 ENSG00000121390 PSPC1 PSP1 paraspeckle component 1 protein-coding 4.924 3.655 4.137 5.119 3.057 1.569 2.272 5.945 0.889 1.327 0.767 5.401 6.685 3.673 0.130 8.690 7.085 7.942 nan 15.778 14.696 5.036 2.586 7.633 7.635 4.508 5.934 4.307 8.305 9.217 8.784 5.937 11.578 2.439 2.937 14.717 11.709 4.278 2.321 1.821 3.613 0.604 4.336 2.272 5.401 0.329 2.339 4.195 4.617 1476 chr6 31800987 31805546 + 0 NA TTS (NR_002745) TTS (NR_002745) 226 NR_002745 26801 NR_002745 ENSG00000201823 SNORD48 RNU48|U48 small nucleolar RNA, C/D box 48 snoRNA 5.159 3.810 3.963 7.506 6.547 3.106 6.976 4.032 1.136 2.964 1.947 10.878 12.698 6.667 0.299 7.945 7.642 7.130 10.250 nan 8.535 9.430 4.681 12.654 13.524 4.492 5.570 11.288 12.253 9.977 8.825 4.966 8.843 6.754 7.949 6.965 10.262 4.133 1.984 5.147 4.859 1.907 3.818 6.976 10.878 2.268 2.762 3.210 3.324 1769 chr9 135842554 135860075 + 0 NA intron (NM_004188, intron 3 of 10) intron (NM_004188, intron 3 of 10) -2784 NM_001135031 8328 Hs.553160 NM_004188 ENSG00000165702 GFI1B BDPLT17|ZNF163B growth factor independent 1B transcriptional repressor protein-coding nan 0.568 0.546 0.232 0.305 0.228 0.213 0.123 0.211 0.115 0.160 0.144 0.463 0.075 0.067 3.072 5.291 6.633 3.027 0.516 0.589 nan 0.117 1.680 1.502 0.135 0.255 0.392 0.525 0.509 0.215 3.294 5.055 0.114 0.136 0.148 0.184 0.377 0.407 0.206 0.081 0.016 0.022 0.213 0.144 0.061 0.069 4.935 0.046 589 chr14 38050915 38070284 + 0 NA exon (NM_004496, exon 2 of 2) exon (NM_004496, exon 2 of 2) 3726 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 8.583 8.373 6.232 9.407 4.572 2.552 1.266 0.112 0.117 3.670 1.887 4.786 21.177 1.275 0.112 0.347 0.384 5.308 7.510 9.447 8.205 8.474 3.424 1.898 2.042 2.523 3.065 7.086 10.806 2.044 2.247 2.119 4.689 12.056 10.026 1.643 2.017 3.808 2.353 7.430 11.064 3.486 3.329 1.266 4.786 0.718 3.799 2.196 0.630 1609 chr7 115542221 115552315 + 0 NA Intergenic Intergenic 61099 NM_001244583 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding nan 0.558 0.774 0.135 0.246 0.111 0.164 0.180 0.175 0.111 0.285 0.260 0.342 0.053 0.118 0.423 0.287 0.243 0.344 0.145 0.227 0.141 0.110 0.350 0.333 0.666 0.781 0.407 0.342 0.426 0.146 0.173 0.269 3.979 5.976 0.338 0.486 0.459 0.583 0.045 0.139 1.152 0.055 0.164 0.260 0.049 0.101 0.069 0.102 513 chr12 122515677 122530045 + 0 NA intron (NM_014938, intron 1 of 16) MIRc|SINE|MIR 6227 NM_014938 22877 Hs.437153 NM_014938 ENSG00000175727 MLXIP MIR|MONDOA|bHLHe36 MLX interacting protein protein-coding 1.933 1.665 1.236 1.151 1.655 0.884 0.752 0.430 0.131 0.735 0.490 1.505 2.204 0.799 0.152 1.530 2.022 0.952 1.387 1.982 1.885 nan 0.758 2.462 2.304 1.434 2.096 3.067 4.096 1.659 1.697 3.709 6.741 1.321 1.500 0.785 1.031 1.909 1.070 1.047 2.052 0.273 0.706 0.752 1.505 0.220 0.619 6.032 0.319 592 chr14 57168918 57178373 + 0 NA Intergenic AluJb|SINE|Alu 98736 NM_001270525 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding nan nan 2.022 0.139 0.645 0.357 0.407 0.109 0.116 0.099 0.490 0.385 0.057 0.141 0.236 0.261 14.753 4.594 0.425 0.551 0.836 0.325 0.681 0.918 0.174 0.240 0.369 0.418 0.972 0.461 0.251 0.525 0.173 0.301 1.651 3.645 nan 0.636 0.049 0.178 0.081 0.211 0.407 0.490 0.051 0.032 0.120 0.872 1641 chr8 53153225 53169856 + 0 NA intron (NM_014682, intron 2 of 25) intron (NM_014682, intron 2 of 25) 54618 NR_134310 101929341 Hs.147170 NR_134310 ENSG00000253551 LOC101929341 - uncharacterized LOC101929341 ncRNA 4.082 nan 1.991 5.022 6.322 3.615 1.586 0.095 0.087 3.853 1.880 5.430 8.696 0.026 0.108 0.524 0.988 0.478 0.677 11.490 11.369 6.185 3.962 0.482 0.483 5.642 nan 3.094 4.741 8.235 8.999 1.053 2.000 6.980 6.193 3.409 5.484 5.121 2.808 0.020 4.737 1.598 0.544 1.586 5.430 1.261 2.814 1.284 1.015 639 chr15 31689166 31696368 + 0 NA intron (NM_001302461, intron 1 of 1) L2a|LINE|L2 73709 NM_015995 51621 Hs.376443 NM_015995 ENSG00000169926 KLF13 BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1 Kruppel like factor 13 protein-coding 1.280 nan nan 0.750 1.235 0.558 0.521 0.508 0.045 0.628 0.262 0.759 2.713 0.074 0.037 0.652 1.561 0.325 0.689 0.619 0.810 2.125 0.487 0.256 0.347 0.385 0.717 0.968 1.077 1.864 1.816 0.652 1.184 2.281 1.767 0.433 0.659 0.656 0.422 0.616 0.630 0.597 0.417 0.521 0.759 3.262 1.804 0.853 0.174 131 chr1 154912738 154936884 + 0 NA intron (NM_020524, intron 2 of 10) intron (NM_020524, intron 2 of 10) 3828 NM_020524 57326 Hs.505806 NM_020524 ENSG00000163346 PBXIP1 HPIP PBX homeobox interacting protein 1 protein-coding nan nan 2.494 0.954 1.436 0.731 2.120 0.816 0.173 0.811 0.433 1.498 4.469 1.324 0.089 4.180 6.067 3.806 4.247 3.610 nan 2.204 1.173 1.939 2.210 1.491 2.146 2.370 3.559 2.719 2.573 6.178 9.210 1.036 1.173 2.168 3.104 1.246 0.769 0.870 1.489 0.269 0.717 2.120 1.498 0.403 1.290 5.564 0.775 76 chr1 46917061 46933279 + 0 NA Intergenic LTR16A|LTR|ERVL -9794 NR_121680 101929651 Hs.638707 NR_121680 ENSG00000224863 LINC01398 - long intergenic non-protein coding RNA 1398 ncRNA nan 0.859 nan 0.142 0.712 0.268 0.419 0.138 0.089 0.385 0.187 1.410 0.857 0.227 0.113 0.295 0.454 0.312 0.341 4.206 4.457 0.551 0.186 0.453 0.529 0.207 nan nan 1.156 0.867 0.829 0.352 nan 0.161 0.152 0.489 1.254 0.471 0.502 0.155 0.197 0.046 0.109 0.419 1.410 0.085 0.113 0.066 0.072 976 chr19 48315738 48333302 + 0 NA promoter-TSS (NM_000554) promoter-TSS (NM_000554) -577 NM_000554 1406 Hs.617342 NM_000554 ENSG00000105392 CRX CORD2|CRD|LCA7|OTX3 cone-rod homeobox protein-coding 1.139 0.774 1.124 0.076 0.316 0.238 0.079 0.068 0.118 0.055 0.066 0.061 0.212 0.161 0.112 0.165 0.171 0.175 0.271 0.295 0.333 0.290 0.174 0.261 0.327 0.194 0.380 0.142 0.226 1.257 0.791 0.141 0.158 0.084 0.114 3.108 10.542 0.363 0.423 0.025 0.035 0.016 0.032 0.079 0.061 0.022 0.029 0.061 4.030 1159 chr20 43949325 43977649 + 0 NA intron (NM_002999, intron 2 of 4) MIRb|SINE|MIR 13577 NM_002999 6385 Hs.632267 NM_002999 ENSG00000124145 SDC4 SYND4 syndecan 4 protein-coding nan nan 2.416 1.394 0.585 0.283 0.458 1.240 0.164 0.371 0.192 1.645 3.336 0.503 0.133 0.664 0.928 0.992 1.814 0.674 0.763 nan 0.522 0.823 0.836 0.299 0.487 2.332 2.921 nan 0.683 0.974 1.540 0.846 1.055 1.624 5.646 0.544 0.369 0.075 0.213 0.301 0.070 0.458 1.645 0.058 0.158 0.977 1.776 1513 chr6 114166714 114183272 + 0 NA Intergenic Intergenic -3521 NM_002356 4082 Hs.519909 NM_002356 ENSG00000277443 MARCKS 80K-L|MACS|PKCSL|PRKCSL myristoylated alanine rich protein kinase C substrate protein-coding nan 2.918 nan 4.772 5.797 3.057 4.354 2.634 0.183 1.350 0.644 2.414 10.355 1.774 0.099 5.696 7.446 4.919 6.790 11.216 nan nan 2.923 6.875 7.221 3.035 nan 2.215 3.494 7.762 9.009 2.862 5.931 3.382 2.508 6.582 nan 1.457 1.072 4.668 3.851 0.924 1.730 4.354 2.414 1.538 1.552 3.525 2.382 1184 chr20 61982641 61999642 + 0 NA promoter-TSS (NR_110634) promoter-TSS (NR_110634) -199 NR_110634 100130587 Hs.640129 NR_110634 ENSG00000203900 LOC100130587 - uncharacterized LOC100130587 ncRNA 0.692 0.922 1.214 0.082 0.823 0.435 0.513 0.091 0.094 0.056 0.066 0.592 0.729 0.274 0.072 0.612 nan 0.068 0.139 0.692 0.515 0.541 0.201 0.389 0.360 0.198 0.367 0.132 0.206 0.634 0.414 0.472 0.710 0.095 0.100 0.120 0.158 0.676 0.451 3.571 0.318 0.056 0.069 0.513 0.592 0.417 0.137 0.350 0.036 1169 chr20 50137181 50160203 + 0 NA intron (NM_001258292, intron 1 of 9) MIR|SINE|MIR 10566 NM_001258297 4773 Hs.744148 NM_012340 ENSG00000101096 NFATC2 NFAT1|NFATP nuclear factor of activated T-cells 2 protein-coding 0.823 1.184 0.544 0.139 1.532 0.778 0.251 0.254 0.105 2.937 1.466 2.622 1.902 0.192 0.092 0.638 nan 0.327 0.627 2.116 2.613 1.229 0.490 0.534 0.619 0.294 0.442 0.636 0.890 0.432 0.262 0.828 1.221 0.435 0.241 0.207 0.332 3.240 1.647 0.785 1.156 0.058 0.024 0.251 2.622 0.068 0.532 0.704 0.016 1469 chr6 21583993 21616701 + 0 NA Intergenic Intergenic 6375 NM_003107 6659 Hs.643910 NM_003107 ENSG00000124766 SOX4 EVI16 SRY-box 4 protein-coding 3.444 2.823 nan 4.276 3.534 2.036 2.964 2.082 0.307 1.811 0.939 5.653 nan 3.628 0.147 3.116 3.961 4.902 nan 7.221 5.862 nan 1.535 10.732 10.737 2.343 3.126 4.433 5.210 3.881 4.617 2.789 6.312 4.684 3.813 1.925 2.488 1.871 1.093 3.906 2.994 1.359 2.194 2.964 5.653 0.966 1.553 2.940 0.884 1438 chr5 169573066 169592841 + 0 NA Intergenic Intergenic 43192 NR_108022 100507267 Hs.634846 NR_108022 LINC01187 CTB-27N1.1|KIDR long intergenic non-protein coding RNA 1187 ncRNA nan 0.702 0.566 0.044 0.127 0.065 0.071 0.163 0.033 0.008 0.074 0.054 0.401 0.121 0.088 0.403 0.339 12.986 10.383 0.199 0.268 0.110 0.054 0.952 0.949 0.126 0.227 0.285 0.437 0.634 0.539 0.186 0.637 0.108 0.152 0.131 0.188 0.508 0.368 0.026 0.094 0.009 0.016 0.071 0.054 0.078 0.030 0.140 0.122 200 chr1 203416047 203436749 + 0 NA Intergenic L2a|LINE|L2 -18485 NM_201348 5549 Hs.632481 NM_002725 ENSG00000188783 PRELP MST161|MSTP161|SLRR2A proline and arginine rich end leucine rich repeat protein protein-coding 1.483 1.074 1.438 0.195 0.566 0.326 0.892 0.148 0.155 0.697 0.324 0.541 1.084 0.042 0.109 0.566 0.740 0.407 0.711 0.695 0.799 3.702 1.255 nan nan 1.873 2.423 0.501 0.589 0.767 0.422 0.198 0.266 1.837 1.841 0.520 1.499 2.174 1.150 0.021 0.415 1.111 0.093 0.892 0.541 0.475 0.034 0.072 0.214 347 chr11 61579582 61585831 + 0 NA promoter-TSS (NM_001281501) promoter-TSS (NM_001281501) 6 NR_031729 100302263 NR_031729 ENSG00000149485 MIR1908 MIRN1908|hsa-mir-1908|mir-1908 microRNA 1908 ncRNA nan 4.291 2.691 7.083 8.498 3.517 5.100 3.466 0.439 3.054 1.077 7.046 11.040 6.135 0.191 7.635 8.399 4.752 7.554 17.704 14.981 8.404 5.263 8.680 8.883 2.962 3.828 7.741 10.785 5.864 6.549 3.601 7.337 7.957 6.571 3.759 6.278 3.786 2.226 7.439 6.405 2.184 3.392 5.100 7.046 2.255 3.434 4.312 2.760 847 chr18 12391185 12421570 + 0 NA Intergenic MIRb|SINE|MIR -1518 NM_006553 10650 Hs.514718 NM_006553 ENSG00000141391 PRELID3A C18orf43|HFL-EDDG1|SLMO1 PRELI domain containing 3A protein-coding 1.637 1.630 1.591 1.320 1.139 0.634 0.693 0.326 0.196 0.527 0.269 1.901 1.684 1.013 0.148 2.096 2.160 0.556 0.939 2.869 2.690 5.370 1.907 1.881 1.837 0.880 1.380 0.965 1.677 1.978 2.251 0.683 1.064 1.765 1.721 1.977 1.991 2.560 1.322 0.934 0.343 0.351 0.824 0.693 1.901 0.442 0.472 0.423 1.138 167 chr1 165250163 165260126 + 0 NA intron (NM_177398, intron 3 of 8) intron (NM_177398, intron 3 of 8) 70334 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 2.387 nan 1.653 0.524 0.704 0.410 2.361 0.104 0.064 2.183 0.849 0.527 1.551 0.011 0.100 0.776 0.668 0.402 1.496 1.386 nan 0.840 0.208 0.136 0.143 0.565 1.041 1.406 nan 4.484 4.573 0.551 0.631 7.644 6.663 1.757 4.577 2.210 1.241 0.475 0.535 2.913 0.415 2.361 0.527 0.726 1.053 0.253 2.123 257 chr10 12083592 12085979 + 0 NA promoter-TSS (NM_015542) promoter-TSS (NM_015542) 55 NM_015542 26019 Hs.370689 NM_015542 ENSG00000151461 UPF2 HUPF2|RENT2|smg-3 UPF2 regulator of nonsense transcripts homolog (yeast) protein-coding nan 4.329 5.506 7.490 7.458 3.331 7.274 9.851 0.738 2.977 0.995 7.268 12.435 5.730 0.179 12.037 11.409 11.499 15.730 9.013 11.306 16.264 12.474 13.112 13.852 6.405 7.356 10.478 17.905 8.117 7.477 8.066 10.208 5.389 6.952 7.906 7.453 3.767 1.634 3.057 4.488 1.446 2.427 7.274 7.268 1.646 3.274 2.949 3.270 920 chr19 7552999 7571056 + 0 NA promoter-TSS (NM_198534) promoter-TSS (NM_198534) -418 NM_198534 374877 Hs.631862 NM_198534 ENSG00000198723 C19orf45 - chromosome 19 open reading frame 45 protein-coding 1.044 0.934 1.446 1.073 1.104 0.511 0.303 0.149 0.089 0.425 0.257 1.229 1.723 0.626 0.092 1.341 1.378 0.710 1.199 1.798 1.647 2.400 0.725 1.013 1.008 0.222 0.415 2.033 nan 0.988 0.831 0.589 0.537 0.635 0.571 0.442 1.115 2.093 1.260 1.053 0.379 0.058 0.287 0.303 1.229 0.373 0.634 0.083 0.242 1660 chr8 77751691 77758768 + 0 NA intron (NM_024721, intron 6 of 10) intron (NM_024721, intron 6 of 10) 123857 NR_130460 100422921 NR_130460 ENSG00000266712 MIR3149 - microRNA 3149 ncRNA 1.331 0.736 1.003 0.172 0.520 0.296 0.218 0.403 0.045 0.378 0.388 0.084 0.244 0.185 0.058 1.871 1.339 10.494 4.010 0.551 0.680 1.144 0.317 16.994 17.418 0.832 1.050 0.421 0.530 0.494 0.243 1.114 2.476 3.839 3.767 0.289 0.645 1.265 0.901 0.072 0.189 1.145 0.067 0.218 0.084 0.850 0.611 0.122 103 chr1 72741796 72752619 + 0 NA intron (NM_173808, intron 1 of 6) intron (NM_173808, intron 1 of 6) 1070 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding nan 1.054 1.328 1.596 1.928 1.068 1.612 0.584 0.179 1.565 1.118 3.418 6.590 0.521 0.110 1.677 2.652 0.869 1.527 8.424 nan 7.808 2.660 3.570 3.600 5.816 nan 3.057 4.956 2.277 3.310 0.284 1.021 1.383 0.621 1.778 2.679 2.356 1.423 4.197 1.734 0.423 1.036 1.612 3.418 0.081 0.702 0.539 0.809 79 chr1 53963592 53980879 + 0 NA 3' UTR (NM_147193, exon 10 of 10) 3' UTR (NM_147193, exon 10 of 10) 47163 NM_033067 63948 Hs.131654 NM_033067 ENSG00000143006 DMRTB1 - DMRT like family B with proline rich C-terminal 1 protein-coding 1.180 0.680 1.231 0.148 0.406 0.250 2.006 1.239 0.204 0.186 0.142 0.172 1.171 0.050 0.075 0.554 0.840 0.584 0.840 2.621 2.409 0.502 0.221 0.464 0.505 2.353 2.621 1.264 1.783 0.859 0.784 0.624 1.088 0.679 0.492 0.730 nan 0.545 0.546 3.485 0.735 0.221 0.106 2.006 0.172 0.463 0.135 0.442 0.446 107 chr1 93543376 93547737 + 0 NA intron (NM_001164393, intron 1 of 12) intron (NM_001164393, intron 1 of 12) 764 NM_001164391 22823 Hs.31016 NM_007358 ENSG00000143033 MTF2 M96|PCL2|TDRD19A|dJ976O13.2 metal response element binding transcription factor 2 protein-coding nan nan 3.594 3.961 5.440 2.331 2.582 4.611 0.452 1.621 0.801 4.541 10.586 5.089 0.219 6.621 5.537 7.188 9.650 9.781 nan 7.857 3.716 14.645 15.543 6.936 nan 11.562 17.170 nan 9.117 4.476 7.374 2.912 2.826 9.513 8.896 3.713 1.661 3.814 3.346 0.388 2.781 2.582 4.541 0.891 1.510 2.154 2.395 865 chr18 42414587 42439458 + 0 NA intron (NM_001130110, intron 2 of 3) intron (NM_001130110, intron 2 of 3) 123109 NR_036203 100422829 NR_036203 ENSG00000265957 MIR4319 - microRNA 4319 ncRNA nan 0.990 1.428 0.468 0.613 0.445 0.986 0.215 0.039 0.540 0.444 0.699 2.825 0.031 0.063 0.688 0.696 0.607 0.592 1.573 1.376 1.519 0.476 0.054 0.078 0.912 1.420 0.569 0.546 1.261 1.139 0.208 0.328 2.048 2.710 0.475 nan 4.251 2.270 3.868 0.190 0.691 0.172 0.986 0.699 0.232 0.411 0.079 0.480 1352 chr4 146738246 146747014 + 0 NA intron (NM_001306215, intron 8 of 14) intron (NM_001306215, intron 8 of 14) 117482 NM_001306215 152485 Hs.133916 NM_178835 ENSG00000151612 ZNF827 - zinc finger protein 827 protein-coding 1.653 0.787 2.423 0.258 0.290 0.290 0.162 0.321 0.074 0.411 0.246 0.437 0.225 0.098 0.050 0.319 0.831 0.309 0.538 0.955 0.841 0.344 0.159 0.131 0.211 0.720 1.167 0.601 0.590 2.519 2.421 0.172 0.335 0.179 0.189 0.465 0.957 0.782 0.647 0.019 0.152 0.021 3.913 0.162 0.437 0.444 0.150 0.034 0.480 1143 chr20 21915788 21926947 + 0 NA Intergenic LTR16C|LTR|ERVL -113361 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 0.585 1.000 nan 0.093 0.232 0.126 0.023 0.141 0.116 0.147 0.134 0.097 0.269 0.020 0.051 0.507 0.403 0.099 0.189 0.218 0.282 0.171 0.134 0.201 0.183 0.235 0.304 0.236 0.336 0.390 0.140 0.226 0.428 1.994 2.774 0.149 0.192 0.607 0.411 0.035 0.048 0.436 0.023 0.097 4.262 0.036 0.033 1413 chr5 90672933 90682794 + 0 NA intron (NR_027435, intron 1 of 2) intron (NR_027435, intron 1 of 2) 1327 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding nan 8.856 4.448 4.805 11.158 5.673 3.953 2.297 0.293 2.133 1.113 15.910 4.883 0.155 6.022 7.626 8.963 11.938 13.573 8.053 7.777 3.779 10.012 10.045 7.142 7.810 7.432 15.276 14.883 20.169 3.286 6.092 14.879 12.489 10.213 nan 2.751 1.558 3.599 6.297 2.302 2.832 3.953 0.749 2.787 3.294 2.605 237 chr1 245019029 245033092 + 0 NA intron (NM_004501, intron 1 of 13) intron (NM_004501, intron 1 of 13) 1767 NM_031844 3192 Hs.106212 NM_004501 ENSG00000153187 HNRNPU HNRNPU-AS1|HNRPU|SAF-A|SAFA|U21.1|hnRNP U heterogeneous nuclear ribonucleoprotein U protein-coding nan 5.290 nan 5.597 5.611 3.076 3.941 2.572 0.286 2.974 1.441 4.202 5.702 3.669 0.194 4.220 4.020 6.640 9.439 7.888 7.519 6.091 2.940 11.772 12.522 3.190 3.843 3.920 5.847 4.344 5.014 1.513 2.917 4.468 4.769 5.942 5.868 2.392 1.399 3.074 1.817 1.059 1.906 3.941 4.202 0.820 1.916 0.803 1.867 1721 chr9 14298110 14331639 + 0 NA promoter-TSS (NM_005596) promoter-TSS (NM_005596) -829 NM_001190737 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding nan nan 5.901 4.464 1.973 1.076 2.518 2.117 0.234 3.687 2.383 3.727 14.785 1.943 0.092 0.750 0.672 3.838 6.703 5.985 4.854 5.147 1.999 1.291 1.337 40.415 42.092 3.055 4.316 0.840 0.840 0.718 1.423 5.639 4.232 3.465 3.817 5.041 2.623 6.944 0.900 1.247 0.931 2.518 3.727 0.396 1.384 0.260 0.755 1064 chr2 144100461 144126736 + 0 NA intron (NM_018460, intron 6 of 13) intron (NM_018460, intron 6 of 13) 226699 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 0.906 nan 1.052 0.109 0.342 0.256 0.390 0.126 0.091 0.203 0.195 0.583 0.327 0.033 0.080 0.370 0.257 0.155 0.252 0.357 0.451 1.004 0.370 0.210 0.204 5.218 5.016 0.301 0.303 0.906 0.663 0.083 0.228 0.051 0.041 0.607 1.367 0.296 0.290 0.070 0.031 0.007 0.289 0.390 0.583 0.026 0.027 0.051 0.226 365 chr11 65623867 65629500 + 0 NA promoter-TSS (NM_005507) promoter-TSS (NM_005507) -879 NM_005507 1072 Hs.170622 NM_005507 ENSG00000172757 CFL1 CFL|HEL-S-15|cofilin cofilin 1 protein-coding nan 4.528 4.411 9.837 7.127 3.637 6.566 3.933 0.345 3.641 2.418 8.561 21.843 10.805 0.183 6.645 9.779 6.935 9.499 13.995 11.336 11.191 3.401 17.478 18.722 6.732 9.973 10.066 10.457 7.847 8.073 4.115 9.854 7.772 7.231 3.466 8.914 4.273 1.889 8.130 8.964 3.255 4.616 6.566 8.561 3.591 4.727 3.342 3.355 1481 chr6 34503004 34524303 + 0 NA intron (NM_012391, intron 1 of 5) AluSx1|SINE|Alu 10457 NM_001252294 25803 Hs.485158 NM_012391 ENSG00000124664 SPDEF PDEF|bA375E1.3 SAM pointed domain containing ETS transcription factor protein-coding nan 1.850 nan 0.363 0.305 0.181 0.325 0.176 0.113 0.650 0.376 0.355 1.415 0.122 0.080 0.551 0.699 0.270 nan nan 0.935 0.698 0.310 0.486 0.559 0.992 1.535 1.790 2.089 1.637 1.795 0.349 0.353 2.131 1.707 1.226 1.598 2.086 1.068 0.369 0.166 0.964 0.116 0.325 0.355 0.863 1.155 0.019 0.452 377 chr11 73086653 73104911 + 0 NA intron (NM_032871, intron 1 of 10) intron (NM_032871, intron 1 of 10) 8069 NM_032871 84957 Hs.533720 NM_032871 ENSG00000054967 RELT TNFRSF19L|TRLT RELT tumor necrosis factor receptor protein-coding nan 1.129 1.656 0.265 1.023 0.473 0.650 0.425 0.035 0.293 0.178 0.584 1.823 0.689 0.094 2.605 4.614 1.500 2.054 1.718 1.784 1.205 0.462 3.937 4.052 1.591 2.239 1.733 2.712 0.888 0.940 1.686 2.569 0.726 0.738 0.697 1.073 0.760 0.638 1.478 0.642 0.146 0.388 0.650 0.584 0.243 0.501 0.769 0.183 1501 chr6 51136242 51169389 + 0 NA Intergenic Intergenic -333853 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 0.773 0.863 nan 0.217 0.381 0.221 0.247 0.077 0.095 0.047 0.075 0.269 0.448 0.033 0.108 0.605 0.413 6.069 6.192 0.380 0.450 0.135 0.098 0.325 0.302 0.152 0.237 0.196 0.226 0.242 0.080 0.188 0.320 0.158 0.161 0.271 0.456 0.147 0.262 0.022 0.097 0.023 0.118 0.247 0.269 0.015 0.007 0.105 0.075 612 chr14 89644213 89660103 + 0 NA intron (NM_005197, intron 4 of 5) intron (NM_005197, intron 4 of 5) 231296 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 2.552 1.132 nan 1.437 0.795 0.465 1.077 0.345 0.152 1.090 0.480 2.752 1.137 0.094 0.101 0.874 1.419 0.246 0.495 1.711 1.903 2.251 2.716 0.471 0.526 2.863 3.766 1.513 2.531 1.858 1.970 0.194 0.394 3.454 3.192 0.462 0.662 nan 1.513 0.325 0.209 1.179 2.326 1.077 2.752 0.082 0.095 0.087 0.171 1566 chr7 27165620 27181029 + 0 NA Intergenic Intergenic -2925 NM_002141 3201 Hs.533357 NM_002141 ENSG00000197576 HOXA4 HOX1|HOX1D homeobox A4 protein-coding 1.557 1.234 0.999 0.069 0.857 0.384 0.160 0.132 0.135 0.438 0.252 1.794 1.036 2.289 0.171 7.237 13.139 9.029 nan 2.371 2.153 0.321 0.138 0.611 0.678 0.835 1.257 1.997 2.484 1.490 1.717 2.443 3.573 0.614 0.457 0.271 nan 1.619 0.966 0.469 0.857 0.247 0.367 0.160 1.794 0.309 0.040 1.601 0.097 1397 chr5 57097356 57143159 + 0 NA Intergenic Intergenic 74732 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LOC101928539 - uncharacterized LOC101928539 ncRNA nan nan 0.964 0.056 0.171 0.098 0.282 0.890 0.131 0.058 0.058 0.018 0.697 2.689 0.182 0.148 0.098 0.869 3.196 0.148 0.176 nan 0.091 0.128 0.104 0.307 0.563 0.171 0.205 nan 0.198 0.078 0.098 0.200 0.242 0.268 0.644 0.364 0.356 0.047 0.083 0.042 0.043 0.282 0.018 0.053 0.062 0.021 0.124 1577 chr7 50644616 50669885 + 0 NA TTS (NM_005311) TTS (NM_005311) -24096 NM_001082971 1644 Hs.359698 NM_000790 ENSG00000132437 DDC AADC dopa decarboxylase protein-coding nan 1.445 1.696 0.198 0.561 0.287 1.029 0.095 0.147 0.347 0.336 0.644 1.519 0.060 0.136 0.473 0.261 0.939 2.641 0.768 0.945 4.917 1.334 0.093 0.112 0.639 0.950 1.639 1.542 1.135 1.078 0.129 0.278 0.908 0.866 1.043 2.456 2.375 1.305 0.404 0.764 0.218 0.565 1.029 0.644 0.240 0.384 0.043 0.639 1548 chr7 10973492 10982240 + 0 NA intron (NM_002489, intron 2 of 3) intron (NM_002489, intron 2 of 3) 1947 NM_002489 4697 Hs.50098 NM_002489 ENSG00000189043 NDUFA4 CI-9k|CI-MLRQ|MLRQ NDUFA4, mitochondrial complex associated protein-coding nan 2.374 nan 3.480 2.847 1.706 2.596 2.608 0.123 0.951 0.453 3.370 5.159 3.088 0.224 nan 5.660 4.237 5.398 6.083 5.775 4.930 3.064 16.709 17.894 3.234 3.845 6.714 8.021 3.167 2.645 3.379 5.297 4.605 4.967 3.879 4.693 3.110 1.914 2.245 2.001 0.872 1.344 2.596 3.370 0.576 1.799 2.234 1.370 691 chr16 14650206 14667156 + 0 NA intron (NM_002582, intron 18 of 23) intron (NM_002582, intron 18 of 23) 65447 NM_001242992 5073 Hs.253197 NM_002582 ENSG00000140694 PARN DAN|DKCB6|PFBMFT4 poly(A)-specific ribonuclease protein-coding 0.954 1.333 nan 2.649 0.432 0.265 0.394 0.298 0.123 0.407 0.325 0.268 0.451 0.115 0.083 0.927 1.311 0.385 0.441 0.350 0.370 6.754 2.410 0.682 0.610 0.483 0.719 1.522 1.608 nan 0.216 1.397 2.417 0.326 0.738 0.292 0.799 1.277 0.717 0.391 0.215 0.050 0.211 0.394 0.268 0.252 0.084 4.187 0.189 331 chr11 44958172 44991541 + 0 NA Intergenic L2b|LINE|L2 -1999 NM_001258321 9537 Hs.554791 NM_006034 ENSG00000175274 TP53I11 PIG11 tumor protein p53 inducible protein 11 protein-coding nan 2.408 2.010 0.564 3.846 1.968 1.255 0.375 0.131 0.513 0.311 1.285 3.081 0.461 0.089 0.802 1.645 0.552 0.832 2.124 1.704 2.369 0.633 0.135 0.114 1.592 2.232 0.443 0.753 3.815 3.693 0.631 0.771 0.962 0.967 0.976 nan 1.310 0.838 2.395 1.154 0.322 0.575 1.255 1.285 2.299 0.131 0.181 0.552 766 chr17 36566978 36585898 + 0 NA Intergenic Intergenic -8282 NM_001199417 57636 Hs.374446 NM_020876 ENSG00000275832 ARHGAP23 - Rho GTPase activating protein 23 protein-coding nan 2.310 0.955 1.200 5.078 2.868 1.875 0.600 0.169 1.797 0.881 3.625 4.523 1.255 0.091 4.357 4.801 0.560 0.853 nan 4.909 4.766 2.268 6.234 6.982 1.078 1.324 5.970 6.184 nan 2.935 2.638 2.787 1.618 1.570 1.994 3.857 2.162 1.066 3.606 3.336 0.291 0.941 1.875 3.625 0.779 1.503 0.864 1.014 655 chr15 65595902 65597562 + 0 NA Intergenic Intergenic -17551 NM_001316944 54956 Hs.30634 NM_017851 ENSG00000138617 PARP16 ARTD15|C15orf30|pART15 poly(ADP-ribose) polymerase family member 16 protein-coding 4.099 4.752 nan 3.533 3.757 1.404 4.776 4.473 0.288 2.505 1.728 3.055 13.039 6.512 0.208 14.746 12.838 9.084 14.462 8.608 7.968 8.113 12.480 16.472 18.204 7.554 8.392 7.690 14.876 15.407 13.232 12.853 12.978 11.529 11.856 12.594 7.732 4.273 2.507 2.351 3.083 0.889 2.249 4.776 3.055 1.023 4.163 4.274 0.894 1646 chr8 59716345 59725236 + 0 NA exon (NM_014729, exon 8 of 9) exon (NM_014729, exon 8 of 9) -148386 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 2.073 nan 2.852 1.302 1.841 1.136 1.571 0.234 0.037 0.811 0.441 6.100 2.333 0.305 0.157 0.390 0.526 0.258 0.611 9.776 11.186 2.120 0.839 0.052 0.093 2.332 nan 2.211 2.176 1.178 0.843 0.099 0.178 2.569 3.530 0.191 0.263 4.593 1.713 1.967 1.758 0.694 1.793 1.571 6.100 0.099 1.120 0.023 0.029 240 chr1 246148835 246173322 + 0 NA intron (NM_001167740, intron 5 of 11) intron (NM_001167740, intron 5 of 11) 419636 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding nan 1.248 nan 0.475 0.484 0.268 0.551 0.553 0.210 0.224 0.242 1.036 0.773 0.053 0.085 0.853 0.899 2.624 4.301 1.004 1.143 1.071 0.426 1.764 1.807 0.641 0.923 0.527 0.881 0.345 0.210 0.619 0.778 0.157 0.269 0.325 0.708 0.582 0.507 0.102 0.203 0.047 0.065 0.551 1.036 0.028 0.523 0.675 0.174 1440 chr5 173906467 173951273 + 0 NA intron (NR_125806, intron 2 of 5) intron (NR_125806, intron 2 of 5) 165513 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 0.568 0.573 0.578 0.064 0.822 0.476 1.407 0.093 0.057 0.042 0.089 0.102 1.374 0.038 0.103 0.243 0.143 5.491 nan 0.313 0.362 0.075 0.041 0.051 0.062 0.472 nan 0.414 0.423 0.177 0.074 0.222 0.304 2.034 2.349 0.088 0.215 0.180 0.185 0.034 0.138 0.677 0.016 1.407 0.102 0.015 0.059 0.088 0.039 350 chr11 62357870 62372962 + 0 NA intron (NM_001330292, intron 6 of 17) MER91C|DNA|hAT-Tip100 3348 NM_001330292 9219 Hs.173043 NM_004739 ENSG00000149480 MTA2 MTA1L1|PID metastasis associated 1 family member 2 protein-coding nan 2.182 2.088 3.931 3.362 1.690 3.168 1.265 0.181 1.510 0.621 2.747 5.349 2.922 0.140 6.912 6.762 4.211 5.573 6.176 5.769 4.532 1.818 5.183 5.620 2.978 4.231 4.965 7.521 3.727 4.080 3.332 5.753 3.308 3.591 3.219 4.136 2.504 1.112 2.420 2.744 0.699 1.631 3.168 2.747 1.288 1.674 2.150 1.178 825 chr17 76833574 76838513 + 0 NA intron (NM_001321291, intron 1 of 20) intron (NM_001321291, intron 1 of 20) 566 NM_001321291 57602 Hs.464243 NM_025090 ENSG00000055483 USP36 DUB1 ubiquitin specific peptidase 36 protein-coding 5.770 4.687 4.307 5.798 4.942 2.777 5.855 3.422 0.442 3.511 1.289 4.337 7.595 2.668 0.131 7.452 6.994 4.853 7.604 8.755 7.026 8.372 5.079 12.599 12.499 nan 5.175 7.298 10.693 8.784 10.871 2.861 5.308 6.327 6.603 5.394 4.719 nan 2.569 2.115 4.374 0.870 2.776 5.855 4.337 1.289 6.231 1.232 1.627 250 chr10 1765201 1782959 + 0 NA intron (NM_018702, intron 1 of 9) intron (NM_018702, intron 1 of 9) 5590 NM_018702 105 Hs.586663 NM_018702 ENSG00000185736 ADARB2 ADAR3|RED2 adenosine deaminase, RNA specific B2 (inactive) protein-coding 0.867 0.511 1.019 0.421 1.018 0.357 0.410 0.105 0.109 1.637 1.034 3.462 1.167 0.024 0.064 2.630 3.621 0.129 0.218 2.472 2.625 0.220 0.148 0.429 0.431 0.125 0.199 1.733 2.976 0.209 0.149 3.116 6.829 0.036 0.033 0.284 0.400 0.662 0.532 0.163 0.526 0.022 0.366 0.410 3.462 0.286 0.813 4.168 0.046 389 chr11 100501477 100516005 + 0 NA Intergenic Intergenic -49666 NM_152432 143872 Hs.741465 NM_152432 ENSG00000165895 ARHGAP42 GRAF3 Rho GTPase activating protein 42 protein-coding 1.115 1.080 1.034 0.060 0.330 0.088 0.417 0.274 0.088 0.142 0.092 0.066 0.749 0.067 0.104 0.562 0.318 0.249 0.398 0.362 0.447 0.144 0.096 0.594 0.613 4.500 5.003 0.146 0.162 1.404 0.788 0.202 0.360 0.436 0.278 1.009 2.554 0.750 0.691 0.031 0.037 0.068 0.425 0.417 0.066 0.142 0.154 0.061 0.844 641 chr15 32905282 32911702 + 0 NA exon (NM_014783, exon 1 of 12) exon (NM_014783, exon 1 of 12) 815 NM_001286480 9824 Hs.591130 NM_014783 ENSG00000198826 ARHGAP11A GAP (1-12) Rho GTPase activating protein 11A protein-coding 4.211 nan nan 2.827 4.484 2.721 4.282 2.930 0.375 3.079 2.113 5.290 8.427 4.171 0.131 4.583 5.064 6.735 8.443 6.798 5.928 5.321 2.277 7.812 7.893 4.895 5.736 5.549 7.932 8.719 9.464 2.936 6.829 6.855 8.984 4.692 6.315 3.042 1.608 3.059 3.220 2.465 2.830 4.282 5.290 1.782 3.009 3.838 1.858 1153 chr20 32250332 32263644 + 0 NA TTS (NM_001024675) TTS (NM_001024675) 2684 NM_001024675 170487 Hs.592151 NM_001024675 ENSG00000182584 ACTL10 C20orf134|dJ63M2.2 actin like 10 protein-coding 2.486 4.982 3.214 5.303 3.075 1.588 1.703 1.640 0.229 1.486 0.774 4.587 7.608 2.206 0.095 4.514 6.371 1.739 2.796 3.499 nan 6.675 1.962 3.521 3.841 2.240 3.205 5.931 6.306 2.987 2.886 1.819 3.282 1.388 1.410 1.950 nan 0.995 0.502 2.257 2.987 0.400 0.647 1.703 4.587 0.488 1.917 0.922 1.183 482 chr12 57470968 57488931 + 0 NA Intergenic Intergenic -2728 NM_005967 4665 Hs.159223 NM_005967 ENSG00000166886 NAB2 MADER NGFI-A binding protein 2 protein-coding nan 1.815 1.297 0.979 1.641 1.026 2.076 2.131 0.358 0.542 0.406 1.048 3.292 4.223 0.154 nan 2.346 2.929 4.171 2.830 nan 1.845 0.897 1.850 2.043 1.170 nan 1.714 nan 2.609 2.910 0.889 1.593 1.034 1.402 2.416 3.121 1.102 0.705 0.876 1.194 0.242 0.787 2.076 1.048 0.753 0.888 1.054 1.026 70 chr1 43145876 43158924 + 0 NA intron (NM_004559, intron 2 of 7) MIR|SINE|MIR 3742 NR_132737 4904 Hs.473583 NM_004559 ENSG00000065978 YBX1 BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1 Y-box binding protein 1 protein-coding 19.720 1.530 nan 1.418 1.794 0.850 1.685 1.127 0.161 2.022 1.092 3.081 2.795 1.589 0.162 2.430 2.231 1.969 2.872 4.025 3.794 2.399 0.819 5.374 5.509 2.440 nan nan 4.010 4.961 5.479 3.657 nan 1.500 1.467 4.009 4.550 2.101 1.107 1.283 1.400 0.279 0.785 1.685 3.081 0.669 0.996 2.167 1.509 145 chr1 156297464 156315912 + 0 NA promoter-TSS (NM_144627) promoter-TSS (NM_144627) -417 NM_144627 128229 Hs.534539 NM_144627 ENSG00000163467 TSACC C1orf182|SIP|SSTK-IP TSSK6 activating cochaperone protein-coding nan nan 1.606 1.017 1.175 0.582 1.073 0.616 0.209 0.943 0.439 0.748 5.377 0.843 0.171 1.475 1.290 1.488 2.090 1.650 nan 2.230 0.774 1.316 1.394 1.438 1.912 2.292 2.474 1.948 1.824 1.468 2.421 1.065 1.351 1.842 5.098 1.211 0.568 0.487 1.147 0.301 0.345 1.073 0.748 0.357 0.573 0.783 1.329 204 chr1 204025628 204079942 + 0 NA intron (NM_005686, intron 1 of 13) intron (NM_005686, intron 1 of 13) 10539 NM_005686 9580 Hs.201671 NM_005686 ENSG00000143842 SOX13 ICA12|Sox-13 SRY-box 13 protein-coding 1.419 2.229 1.415 2.616 3.325 1.755 1.435 0.665 0.237 0.717 0.338 2.867 2.952 0.183 0.105 2.955 4.103 4.546 4.226 2.668 2.800 2.977 0.806 nan nan 0.289 0.565 2.829 2.863 0.506 0.367 1.344 2.363 0.976 0.722 0.401 0.828 1.511 0.809 0.936 2.302 0.120 0.423 1.435 2.867 0.134 0.144 1.391 0.102 1215 chr22 18631223 18652159 + 0 NA intron (NM_017414, intron 2 of 10) intron (NM_017414, intron 2 of 10) 8933 NM_017414 11274 Hs.38260 NM_017414 ENSG00000184979 USP18 ISG43|UBP43 ubiquitin specific peptidase 18 protein-coding 0.931 nan 1.296 1.546 1.049 0.671 0.780 0.722 0.223 0.835 0.559 1.475 3.005 0.337 0.072 1.915 2.155 0.992 1.244 1.814 1.638 3.101 0.997 2.071 2.170 0.209 0.330 2.946 3.615 1.032 1.208 0.889 1.189 2.285 2.906 0.122 0.208 4.467 2.362 0.671 1.348 0.752 0.256 0.780 1.475 0.450 0.980 0.747 0.076 1045 chr2 70331010 70371630 + 0 NA non-coding (NR_024444, exon 2 of 2) non-coding (NR_024444, exon 2 of 2) 1128 NR_024444 100133985 Hs.135528 NR_024444 ENSG00000231327 LINC01816 - long intergenic non-protein coding RNA 1816 ncRNA nan nan 2.893 2.505 3.757 1.916 2.589 1.625 0.487 0.716 0.382 2.991 3.729 2.160 0.201 2.851 2.553 1.978 3.297 4.210 4.045 3.581 1.924 4.357 4.535 1.844 2.214 4.964 7.210 2.215 1.750 3.371 4.206 1.629 1.799 2.318 3.847 nan 0.789 2.387 2.749 0.280 1.005 2.589 2.991 1.259 1.419 3.183 0.710 1090 chr2 183987969 183991523 + 0 NA intron (NR_109856, intron 1 of 7) intron (NR_109856, intron 1 of 7) 663 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 5.541 3.622 3.637 6.060 4.022 2.302 3.888 2.048 0.090 2.277 1.417 4.162 10.469 3.207 0.113 5.935 6.828 5.184 8.330 7.934 6.206 8.953 4.446 16.962 18.924 nan 7.778 16.584 22.569 9.028 10.201 5.113 7.450 5.007 5.097 7.849 7.789 3.405 1.944 3.470 1.983 0.622 2.014 3.888 4.162 0.979 2.705 2.233 1.570 22 chr1 7392464 7403011 + 0 NA intron (NM_015215, intron 5 of 22) intron (NM_015215, intron 5 of 22) -433592 NM_004781 9341 Hs.66708 NM_004781 ENSG00000049245 VAMP3 CEB vesicle associated membrane protein 3 protein-coding 1.175 nan 1.405 2.419 1.413 0.638 0.480 0.163 0.065 0.685 0.328 1.166 8.591 0.031 0.079 1.079 1.837 0.255 0.631 2.748 2.467 2.157 0.557 0.227 0.254 0.249 nan nan 6.468 nan 0.701 1.822 2.389 1.144 1.389 0.380 0.740 1.533 1.082 2.249 1.233 0.190 1.068 0.480 1.166 0.644 1.465 1.768 0.175 1210 chr21 45230116 45236575 + 0 NA promoter-TSS (NR_026961) promoter-TSS (NR_026961) -897 NR_026961 284837 Hs.592159 NM_194310 ENSG00000215458 AATBC - apoptosis associated transcript in bladder cancer ncRNA nan 2.750 3.035 0.558 0.701 0.496 0.653 0.105 0.168 0.171 0.114 0.771 11.274 0.066 0.032 0.678 0.997 0.508 0.721 1.681 1.338 nan 0.222 0.456 0.381 0.765 nan 1.922 3.600 1.235 1.345 1.015 0.893 2.618 2.112 0.438 1.091 2.557 1.232 7.040 1.278 0.506 0.232 0.653 0.771 2.386 0.316 0.214 0.250 519 chr12 125216534 125256983 + 0 NA Intergenic Intergenic 111761 NM_005505 949 Hs.731377 NM_005505 ENSG00000073060 SCARB1 CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1 scavenger receptor class B member 1 protein-coding 1.639 1.723 1.625 0.219 0.745 0.384 0.850 0.579 0.195 0.248 0.210 0.565 2.004 0.426 0.133 1.442 2.156 0.462 0.932 1.128 1.168 nan 0.344 0.425 0.475 2.682 3.220 0.829 1.170 4.630 3.781 0.761 0.916 0.548 0.833 1.262 3.469 1.533 0.952 1.258 1.276 0.249 0.099 0.850 0.565 1.063 0.307 0.690 0.987 900 chr18 60920322 60941323 + 0 NA intron (NM_000633, intron 2 of 2) intron (NM_000633, intron 2 of 2) 55791 NM_000657 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2, apoptosis regulator protein-coding 0.897 1.239 3.338 2.290 2.453 1.347 0.432 0.183 0.092 0.812 0.294 3.017 4.188 0.036 0.124 1.770 2.679 3.394 3.340 7.484 7.084 4.091 1.748 1.072 nan 0.305 nan 4.020 4.085 0.830 0.584 1.997 2.539 4.913 6.400 0.150 0.188 6.121 3.470 3.730 0.754 1.106 0.665 0.432 3.017 0.264 0.430 2.140 0.036 932 chr19 13946341 13977625 + 0 NA Intergenic Intergenic -14510 NR_029495 407010 NR_029495 ENSG00000207980 MIR23A MIRN23A|hsa-mir-23a|miRNA23A|mir-23a microRNA 23a ncRNA 3.454 2.399 2.466 1.093 2.133 1.284 3.613 2.883 0.597 1.415 0.407 3.034 2.513 5.937 0.189 1.033 2.220 2.014 4.244 2.399 2.215 3.990 2.851 1.799 1.844 1.789 2.355 3.243 5.673 1.493 1.125 0.448 0.595 4.059 3.966 1.672 2.196 1.836 1.368 1.144 0.419 0.814 0.394 3.613 3.034 0.744 3.004 0.287 0.505 1379 chr5 33996450 34014271 + 0 NA intron (NM_001167595, intron 2 of 5) intron (NM_001167595, intron 2 of 5) 2860 NM_014324 23600 Hs.508343 NM_014324 ENSG00000242110 AMACR AMACRD|CBAS4|P504S|RACE|RM alpha-methylacyl-CoA racemase protein-coding 1.744 2.794 nan 9.070 1.574 0.688 0.669 2.417 0.482 2.668 1.814 4.819 3.562 0.907 0.169 1.186 1.517 1.237 1.632 3.910 3.699 6.608 3.722 1.525 1.438 2.406 3.117 4.321 5.193 3.803 3.531 1.166 2.166 2.292 2.054 1.012 1.994 4.243 2.024 0.612 2.070 0.572 0.423 0.669 4.819 0.493 3.856 0.877 0.826 1663 chr8 93098855 93122866 + 0 NA intron (NM_175634, intron 1 of 11) intron (NM_175634, intron 1 of 11) 1056 NM_001198628 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 translocation partner 1 protein-coding nan 1.423 4.489 3.711 1.338 0.761 2.659 1.589 0.173 0.764 0.618 3.170 12.039 0.052 0.071 0.218 0.159 0.311 nan 5.506 4.879 2.624 0.828 0.280 0.247 1.297 1.619 3.453 4.504 5.804 8.062 0.164 0.212 1.219 0.593 2.968 4.676 0.952 0.594 5.119 2.989 0.480 2.931 2.659 3.170 0.685 2.325 0.066 1.006 1216 chr22 19465004 19468836 + 0 NA promoter-TSS (NM_001178010) promoter-TSS (NM_001178010) -182 NM_001035247 7353 Hs.474213 NM_005659 ENSG00000070010 UFD1L UFD1 ubiquitin fusion degradation 1 like (yeast) protein-coding 5.102 nan 3.972 4.037 5.666 3.196 3.373 4.890 0.380 2.859 0.972 4.599 8.020 3.941 0.090 8.730 7.006 8.115 11.295 7.397 8.687 7.404 7.266 16.447 17.457 5.570 7.083 8.183 12.089 9.929 9.837 5.932 7.801 8.172 11.845 7.649 4.915 6.493 3.990 1.861 2.530 1.689 1.754 3.373 4.599 1.427 2.812 1.239 1.388 1128 chr20 326487 330020 + 0 NA promoter-TSS (NM_001323685) promoter-TSS (NM_001323685) -296 NM_001323685 80023 Hs.416024 NM_024958 ENSG00000125841 NRSN2 C20orf98|dJ1103G7.6 neurensin 2 protein-coding 6.867 7.733 4.262 5.840 5.974 3.174 5.913 2.982 0.320 2.195 1.308 4.968 15.533 4.307 0.131 7.436 10.978 5.220 6.338 9.093 7.933 9.342 4.302 8.111 7.828 4.501 5.916 9.474 14.286 12.415 13.841 4.875 6.703 5.915 5.377 5.246 9.171 2.156 1.001 3.400 11.552 1.731 2.852 5.913 4.968 4.406 9.543 3.449 2.861 848 chr18 19584138 19589021 + 0 NA Intergenic Intergenic 162350 NR_102763 100128893 Hs.514745 NR_102763 ENSG00000266010 GATA6-AS1 BM742401|locus5689 GATA6 antisense RNA 1 (head to head) ncRNA 0.709 0.614 0.802 0.198 0.227 0.033 0.373 0.092 0.163 0.121 0.078 0.073 0.354 0.134 0.164 0.402 0.231 0.267 0.547 0.302 0.513 14.363 4.816 0.162 0.161 0.141 0.244 0.055 0.157 0.371 0.161 0.141 0.186 0.124 0.164 0.138 0.270 0.255 0.422 0.034 0.050 0.059 0.030 0.373 0.073 0.031 0.041 0.076 912 chr19 1565670 1580397 + 0 NA Intergenic AluJb|SINE|Alu -4976 NM_203304 399664 Hs.436495 NM_203304 ENSG00000181588 MEX3D MEX-3D|MEX3|OK/SW-cl.4|RKHD1|RNF193|TINO mex-3 RNA binding family member D protein-coding 1.783 1.189 3.038 1.360 0.958 0.582 1.559 0.391 0.144 0.524 0.357 1.791 2.699 0.727 0.064 0.679 0.784 1.615 2.188 2.400 1.971 1.122 0.382 1.561 1.473 0.760 1.380 0.593 nan 1.205 0.959 0.312 0.453 1.513 1.232 1.530 1.102 1.453 0.855 5.063 1.899 0.218 0.156 1.559 1.791 0.602 1.296 0.060 0.291 987 chr19 49953829 49958325 + 0 NA promoter-TSS (NM_001145396) promoter-TSS (NM_001145396) -396 NM_153329 126133 Hs.719998 NM_153329 ENSG00000161618 ALDH16A1 - aldehyde dehydrogenase 16 family member A1 protein-coding 6.778 3.299 6.080 3.986 10.318 5.950 4.562 2.692 0.820 2.652 1.093 4.465 9.241 5.531 0.239 5.905 5.610 6.309 9.801 10.060 8.706 14.347 6.098 16.217 18.352 7.290 8.570 8.539 12.524 12.889 12.213 3.193 4.427 6.850 10.034 6.987 9.702 5.330 2.419 5.250 5.574 1.592 2.542 4.562 4.465 1.973 3.099 1.696 3.394 1141 chr20 21550150 21579456 + 0 NA intron (NR_109880, intron 1 of 3) intron (NR_109880, intron 1 of 3) 14141 NR_109880 101929625 Hs.542413 NR_109880 LINC01727 - long intergenic non-protein coding RNA 1727 ncRNA 0.748 1.031 nan 0.288 2.287 1.405 0.192 0.094 0.083 0.824 0.536 1.143 1.085 0.044 0.081 0.625 0.460 0.134 0.201 2.437 2.562 2.864 1.167 0.154 0.163 0.202 0.306 0.391 1.129 0.574 0.338 0.176 0.258 0.584 0.611 0.111 0.184 3.570 1.600 0.025 0.109 0.177 0.071 0.192 1.143 0.168 0.881 0.047 0.038 206 chr1 205598947 205607048 + 0 NA promoter-TSS (NM_021795) promoter-TSS (NM_021795) -997 NM_021795 2005 Hs.497520 NM_001973 ENSG00000158711 ELK4 SAP1 ELK4, ETS transcription factor protein-coding 5.144 4.839 6.827 2.485 3.659 1.905 2.905 2.182 0.238 1.825 0.980 3.156 4.818 2.488 0.182 3.110 3.480 5.231 8.219 6.126 5.373 3.694 2.282 nan nan 2.586 3.556 4.936 7.741 3.336 4.066 1.404 2.106 8.551 8.585 3.700 3.926 2.480 1.609 2.304 4.650 2.427 1.199 2.905 3.156 0.936 1.681 0.756 1.183 89 chr1 59235215 59253207 + 0 NA Intergenic Intergenic 5574 NM_002228 3725 Hs.696684 NM_002228 ENSG00000177606 JUN AP-1|AP1|c-Jun Jun proto-oncogene, AP-1 transcription factor subunit protein-coding 3.243 2.619 5.404 2.852 2.645 1.557 1.777 2.320 0.247 2.608 1.097 5.103 6.979 0.519 0.100 1.311 2.228 2.149 3.401 7.383 5.318 4.514 2.530 4.780 5.074 2.963 3.996 5.409 7.027 1.698 2.458 1.202 1.811 2.405 1.777 1.533 nan 2.771 1.510 1.446 1.369 0.595 2.246 1.777 5.103 0.833 1.564 0.276 0.550 1725 chr9 22330682 22346699 + 0 NA Intergenic Intergenic -108150 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 0.970 nan nan 0.220 0.157 0.110 0.184 0.544 0.101 0.138 0.122 0.082 0.266 0.013 0.105 0.168 0.104 0.192 0.342 0.281 0.347 0.636 0.216 0.064 0.050 3.991 4.934 0.109 0.133 1.183 0.710 0.159 0.239 1.271 2.255 0.256 0.573 1.313 0.842 0.018 0.062 0.457 0.085 0.184 0.082 0.056 0.031 0.146 1190 chr20 62839953 62857404 + 0 NA intron (NM_004535, intron 11 of 22) intron (NM_004535, intron 11 of 22) -38370 NM_018257 55251 Hs.744845 NM_018257 ENSG00000203880 PCMTD2 C20orf36 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 protein-coding 0.906 0.968 0.804 0.201 0.295 0.165 0.536 0.111 0.116 0.261 0.118 0.214 0.574 0.102 0.130 0.883 nan 0.168 0.227 0.621 0.746 0.530 0.311 0.629 0.639 0.375 0.624 0.366 0.498 0.441 0.308 0.586 0.772 0.057 0.104 0.426 0.733 1.377 0.824 4.779 2.653 0.028 0.124 0.536 0.214 0.050 0.279 0.131 0.108 660 chr15 67437946 67447711 + 0 NA intron (NM_001145103, intron 1 of 8) (GAAA)n|Simple_repeat|Simple_repeat 12469 NM_001145103 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 0.763 1.088 nan 0.278 0.351 0.331 0.722 1.354 0.388 0.143 0.186 0.246 0.897 0.244 0.105 0.281 0.297 7.451 13.869 0.209 0.371 nan 0.199 0.323 0.287 0.351 0.561 0.906 0.900 0.448 0.229 0.251 0.462 0.407 0.578 0.162 0.247 0.357 0.334 0.017 0.147 0.059 0.089 0.722 0.246 0.109 0.177 0.225 0.050 474 chr12 54365968 54433269 + 0 NA Intergenic CpG -3272 NM_022658 3224 Hs.664500 NM_022658 ENSG00000037965 HOXC8 HOX3|HOX3A homeobox C8 protein-coding nan 1.432 1.299 0.085 0.347 0.189 0.186 1.100 0.128 0.221 0.157 0.263 1.696 2.075 0.069 nan 13.381 5.793 8.152 0.517 nan 0.250 0.129 4.553 4.767 1.461 nan 1.110 nan 0.997 0.737 7.441 14.167 1.716 1.790 1.463 2.885 0.549 0.489 1.240 4.574 0.635 0.016 0.186 0.263 0.457 0.673 6.895 0.881 613 chr14 89672102 89700166 + 0 NA intron (NM_001085471, intron 4 of 6) intron (NM_001085471, intron 4 of 6) 197320 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 1.888 1.137 nan 0.518 0.831 0.409 0.511 0.255 0.178 0.857 0.341 2.300 1.486 0.042 0.120 0.302 0.279 0.264 0.527 1.061 1.231 0.903 0.565 0.407 0.453 2.182 2.811 2.385 3.777 0.767 0.557 0.141 0.322 1.055 0.858 0.207 0.382 nan 1.361 0.765 0.553 0.303 0.546 0.511 2.300 0.131 0.083 0.035 0.073 1483 chr6 35435057 35476736 + 0 NA intron (NM_003214, intron 1 of 12) intron (NM_003214, intron 1 of 12) 8965 NM_003214 7005 Hs.485205 NM_003214 ENSG00000007866 TEAD3 DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5 TEA domain transcription factor 3 protein-coding nan 1.554 nan 1.421 0.764 0.388 1.494 0.898 0.262 0.282 0.168 2.490 1.699 0.816 0.104 2.152 2.723 1.583 nan nan 1.381 1.546 0.755 2.649 2.788 1.217 1.790 5.146 6.315 2.101 2.078 1.694 2.771 0.636 0.538 2.329 3.258 0.678 0.558 1.412 0.395 0.110 0.361 1.494 2.490 0.699 0.586 1.269 1.559 1692 chr8 143520312 143541624 + 0 NA Intergenic Intergenic -14409 NM_001702 575 Hs.194654 NM_001702 ENSG00000181790 ADGRB1 BAI1|GDAIF adhesion G protein-coupled receptor B1 protein-coding 1.064 0.619 nan 0.141 0.478 0.257 0.760 0.060 0.052 0.066 0.075 1.739 1.918 0.346 0.049 1.032 1.575 0.139 0.185 nan 3.019 nan 0.158 0.254 0.297 0.671 1.077 0.445 0.824 0.855 0.886 0.648 0.742 0.188 0.206 0.244 0.287 0.569 0.367 1.754 0.437 0.013 0.107 0.760 1.739 0.264 0.241 0.241 0.040 97 chr1 68176041 68191529 + 0 NA intron (NM_018841, intron 2 of 3) intron (NM_018841, intron 2 of 3) 32925 NM_001199742 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 2.121 1.214 nan 0.750 0.817 0.476 2.675 1.586 0.280 1.494 0.712 0.903 1.926 0.084 0.119 0.581 0.609 5.425 3.244 1.113 1.068 5.126 1.986 0.282 0.252 nan nan 2.830 nan 0.465 0.353 0.251 0.498 1.817 1.719 0.925 3.200 2.944 1.568 1.204 1.508 0.604 0.286 2.675 0.903 0.214 1.063 0.186 0.655 1348 chr4 106551303 106560075 + 0 NA intron (NM_001242729, intron 4 of 13) intron (NM_001242729, intron 4 of 13) 72941 NR_046840 100874374 Hs.668908 NR_046840 ENSG00000249885 ARHGEF38-IT1 - ARHGEF38 intronic transcript 1 ncRNA 0.624 nan nan 0.650 0.378 0.276 0.233 0.265 0.091 0.180 0.131 0.233 0.907 0.025 0.078 1.061 1.347 6.977 11.721 0.270 0.261 0.140 0.048 0.211 0.196 0.656 nan 0.568 0.512 0.368 0.190 0.612 2.470 0.186 0.225 0.381 nan 0.486 0.333 0.019 0.072 0.033 0.054 0.233 0.233 0.011 0.209 2.160 0.098 1598 chr7 103552322 103558335 + 0 NA intron (NM_173054, intron 2 of 63) intron (NM_173054, intron 2 of 63) 74635 NM_173054 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding nan 0.617 0.762 0.161 0.166 0.160 0.122 0.095 0.081 0.419 0.165 0.278 0.375 0.037 0.124 0.628 0.312 7.229 2.853 0.228 0.363 0.491 0.244 0.603 0.521 0.473 0.537 0.339 0.295 0.481 0.203 0.197 0.251 0.259 0.330 0.380 nan 0.793 0.748 0.028 0.060 0.063 0.040 0.122 0.278 0.068 0.067 0.102 100 chr1 71889470 71896241 + 0 NA intron (NM_173808, intron 6 of 6) intron (NM_173808, intron 6 of 6) 345848 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA nan 0.729 0.978 0.455 0.544 0.283 0.272 0.065 0.047 1.203 0.571 0.713 0.326 0.064 0.169 0.555 0.515 0.291 0.273 0.852 nan 10.706 4.673 1.008 0.989 1.009 nan 0.389 0.362 0.529 0.188 0.246 0.414 1.116 0.846 0.615 1.052 1.059 0.606 0.196 0.091 0.111 0.036 0.272 0.713 0.014 0.030 0.130 0.109 404 chr11 118777793 118801823 + 0 NA Intergenic Intergenic -8195 NM_182557 283149 Hs.414740 NM_182557 ENSG00000186174 BCL9L BCL9-2|DLNB11 B-cell CLL/lymphoma 9-like protein-coding 1.496 1.749 1.855 1.265 3.244 1.639 4.068 1.678 0.208 0.950 0.573 2.517 4.400 6.361 0.167 4.252 nan 4.036 8.194 2.269 1.957 2.640 0.866 4.161 4.416 2.546 nan 4.317 5.438 1.141 1.187 8.189 12.401 3.386 3.547 1.187 2.975 1.243 0.738 4.259 2.657 1.158 0.479 4.068 2.517 0.819 0.680 11.380 0.477 551 chr13 100552744 100569043 + 0 NA non-coding (NR_104592, exon 10 of 10) non-coding (NR_104592, exon 10 of 10) 48526 NR_120421 101927437 Hs.619936 NR_120421 LOC101927437 - uncharacterized LOC101927437 ncRNA 1.046 3.403 2.546 3.048 0.331 0.118 2.720 0.166 0.078 1.300 1.096 0.205 2.260 0.081 0.061 0.768 0.527 0.369 0.344 0.881 1.147 4.440 1.117 0.165 0.247 0.868 nan 1.487 1.383 0.586 0.306 0.225 0.321 3.558 4.185 0.239 nan 1.447 0.578 0.297 1.352 1.146 0.204 2.720 0.205 0.336 1.023 0.018 0.046 1546 chr7 5567198 5573210 + 0 NA promoter-TSS (NM_001101) promoter-TSS (NM_001101) 28 NM_001101 60 Hs.520640 NM_001101 ENSG00000075624 ACTB BRWS1|PS1TP5BP1 actin beta protein-coding 8.638 4.140 6.761 5.068 6.205 2.980 6.354 3.111 0.549 2.641 1.837 10.360 nan 9.008 0.228 4.239 8.036 3.856 nan 9.641 11.812 nan 2.094 16.302 17.526 3.815 5.960 nan 6.529 5.024 4.965 4.418 10.571 4.659 3.349 3.199 6.788 2.033 1.075 7.132 4.403 2.006 4.544 6.354 10.360 2.490 5.465 1.709 3.438 1594 chr7 102064020 102075985 + 0 NA Intergenic Intergenic -3975 NM_032831 80228 Hs.363308 NM_032831 ENSG00000160991 ORAI2 C7orf19|CBCIP2|MEM142B|TMEM142B ORAI calcium release-activated calcium modulator 2 protein-coding nan 0.941 2.162 0.690 0.816 0.217 1.407 0.499 0.149 0.445 0.305 0.704 1.633 1.327 0.155 3.369 5.561 0.760 1.242 1.319 1.347 1.703 0.643 0.571 0.663 0.664 1.053 0.934 1.356 1.431 1.477 2.416 3.502 1.444 1.280 1.275 nan 1.697 0.974 0.506 1.867 0.300 1.686 1.407 0.704 0.202 0.541 3.221 0.218 241 chr1 246263498 246281071 + 0 NA intron (NM_001167740, intron 5 of 11) L2c|LINE|L2 308430 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding nan 1.219 nan 4.350 0.704 0.330 1.188 0.323 0.111 0.484 0.408 1.640 1.441 0.110 0.114 0.434 0.400 0.521 0.880 0.869 1.038 6.933 2.645 0.605 0.677 0.541 0.717 5.062 5.341 0.372 0.205 0.162 0.295 0.885 1.362 0.558 1.133 1.226 0.835 0.110 0.162 0.109 0.059 1.188 1.640 0.050 2.567 0.060 0.266 391 chr11 100622154 100646535 + 0 NA intron (NM_152432, intron 1 of 23) AluSx|SINE|Alu -75658 NR_133571 100128386 Hs.635125 NR_133571 ENSG00000248027 LOC100128386 - uncharacterized LOC100128386 ncRNA 0.850 0.953 0.893 0.054 0.302 0.192 0.242 0.271 0.073 0.163 0.129 0.039 0.539 0.076 0.120 0.548 0.287 0.253 0.468 0.505 0.525 0.118 0.077 0.536 0.555 3.589 4.159 0.130 0.175 0.540 0.266 0.183 0.285 0.442 0.365 0.817 1.847 1.091 0.745 0.027 0.058 0.074 0.646 0.242 0.039 0.316 0.370 0.032 0.532 1390 chr5 51278649 51314898 + 0 NA Intergenic Intergenic -617607 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA nan nan 0.635 1.079 4.227 2.255 1.897 0.072 0.084 1.929 1.142 1.761 1.885 0.042 0.113 0.239 0.160 4.639 2.545 4.458 5.299 nan 1.337 0.076 0.060 0.692 0.900 0.492 0.518 nan 0.486 0.072 0.104 2.207 3.090 0.376 0.965 1.950 0.805 2.699 1.136 0.704 0.300 1.897 1.761 0.029 0.039 0.024 0.088 901 chr18 60980993 60991008 + 0 NA 5' UTR (NM_000633, exon 2 of 3) 5' UTR (NM_000633, exon 2 of 3) 613 NM_000657 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2, apoptosis regulator protein-coding 1.719 1.789 5.385 5.576 3.510 1.618 2.756 0.437 0.032 1.211 0.609 4.103 13.329 0.498 0.088 2.747 3.351 6.746 5.834 8.712 7.065 7.579 2.888 16.553 16.359 0.606 nan 8.176 8.734 1.782 1.824 2.593 5.538 4.449 4.564 0.499 0.386 6.217 3.237 3.926 2.787 0.872 1.160 2.756 4.103 0.427 2.288 2.387 0.126 499 chr12 104522864 104533097 + 0 NA intron (NM_006166, intron 2 of 7) intron (NM_006166, intron 2 of 7) 4060 NM_006166 4801 Hs.84928 NM_006166 ENSG00000120837 NFYB CBF-A|CBF-B|HAP3|NF-YB nuclear transcription factor Y subunit beta protein-coding 2.634 2.168 nan 2.836 3.366 1.639 2.400 1.541 0.315 1.210 0.781 3.497 3.399 1.708 0.173 2.601 2.304 3.080 4.523 4.755 4.508 5.261 1.949 4.278 4.065 2.534 3.513 3.137 4.855 3.694 3.832 1.123 2.788 2.497 1.926 3.816 3.220 4.957 2.053 1.688 1.990 0.521 0.846 2.400 3.497 0.389 1.220 0.741 0.976 983 chr19 49135658 49142453 + 0 NA exon (NM_001352, exon 2 of 4) exon (NM_001352, exon 2 of 4) 1752 NM_001352 1628 Hs.414480 NM_001352 ENSG00000105516 DBP DABP D-box binding PAR bZIP transcription factor protein-coding 3.810 3.796 4.220 3.762 12.648 6.536 3.988 3.505 0.772 2.187 0.973 4.449 8.748 6.344 0.174 4.178 5.675 3.766 6.452 5.687 5.294 5.701 2.505 9.787 10.515 5.355 5.926 6.561 9.636 6.201 6.110 4.517 5.863 2.825 2.718 2.259 7.294 4.072 1.655 4.686 10.846 0.938 2.018 3.988 4.449 2.146 2.579 3.952 3.672 1514 chr6 122709356 122723129 + 0 NA Intergenic L2b|LINE|L2 -4454 NM_004506 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 2.354 1.342 1.948 1.310 1.592 0.872 1.188 0.374 0.105 0.853 0.430 1.447 2.010 0.505 0.097 1.952 3.184 2.029 2.756 2.083 2.141 6.821 6.679 2.446 2.345 0.748 0.965 1.249 2.846 1.874 1.867 0.744 1.573 1.236 1.120 1.595 1.702 1.118 0.983 0.317 0.903 0.151 0.391 1.188 1.447 0.155 0.605 0.283 0.638 1296 chr3 156390395 156411373 + 0 NA intron (NM_001184718, intron 2 of 5) intron (NM_001184718, intron 2 of 5) 6431 NM_001184718 25976 Hs.744050 NM_015508 ENSG00000163659 TIPARP ARTD14|PARP7|pART14 TCDD inducible poly(ADP-ribose) polymerase protein-coding nan 1.742 1.754 1.208 1.629 0.917 0.659 1.665 0.231 1.809 1.139 1.112 1.700 0.580 0.106 0.969 1.763 1.927 2.882 1.547 1.627 7.746 4.615 3.490 3.223 2.794 nan 1.631 3.636 2.449 2.050 0.682 1.606 1.029 1.198 2.099 3.018 2.045 1.393 0.329 0.564 0.224 0.478 0.659 1.112 0.190 0.372 0.656 1.011 647 chr15 57486126 57574386 + 0 NA intron (NM_001306220, intron 4 of 11) intron (NM_001306220, intron 4 of 11) 18601 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20 transcription factor 12 protein-coding 0.940 1.049 1.311 1.369 3.325 1.663 0.615 0.743 0.125 1.070 0.778 3.334 5.061 0.066 0.090 0.581 0.597 0.670 0.774 2.308 2.848 2.116 0.789 0.803 0.779 0.787 1.142 4.745 5.410 2.392 1.777 0.804 1.522 2.008 2.534 0.831 1.602 1.535 0.705 0.604 1.013 0.471 0.386 0.615 3.334 0.103 0.555 1.497 0.321 48 chr1 27012315 27033755 + 0 NA exon (NM_006015, exon 1 of 20) exon (NM_006015, exon 1 of 20) 513 NM_139135 8289 Hs.468972 NM_006015 ENSG00000117713 ARID1A B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1 AT-rich interaction domain 1A protein-coding 4.901 2.925 nan 5.119 3.381 1.845 2.943 1.867 0.174 1.334 0.605 1.808 6.220 5.596 0.183 3.588 3.670 3.916 5.437 7.542 6.641 3.701 1.413 9.529 9.819 4.246 5.541 4.273 6.271 4.566 5.172 3.061 5.470 2.805 2.700 4.868 5.952 2.047 1.175 3.189 3.723 0.609 2.076 2.943 1.808 1.152 1.368 2.825 2.155 1057 chr2 121704992 121722826 + 0 NA intron (NM_005270, intron 4 of 12) L2a|LINE|L2 159042 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 0.922 nan nan 0.059 0.186 0.091 0.395 0.148 0.054 0.080 0.097 0.060 0.542 0.061 0.087 0.412 0.496 0.353 0.424 0.370 0.445 0.237 0.117 0.588 0.497 0.454 0.737 1.470 1.166 0.618 0.601 0.307 0.386 0.072 0.082 0.610 1.048 0.549 0.393 3.632 0.190 0.027 0.044 0.395 0.060 0.158 0.025 0.051 0.331 800 chr17 49229760 49236614 + 0 NA intron (NM_001018136, intron 2 of 7) intron (NM_001018136, intron 2 of 7) 2267 NM_198175 4830 Hs.463456 NM_000269 ENSG00000239672 NME1 AWD|GAAD|NB|NBS|NDKA|NDPK-A|NDPKA|NM23|NM23-H1 NME/NM23 nucleoside diphosphate kinase 1 protein-coding 3.885 1.644 nan 1.814 1.861 1.066 1.394 1.193 0.117 1.227 0.893 1.828 2.481 2.479 0.132 3.101 3.067 2.131 2.873 4.063 nan 3.885 1.403 7.046 7.411 2.621 3.806 5.154 nan 9.415 10.724 2.121 4.003 3.707 3.370 4.056 6.954 2.661 1.769 0.826 1.285 0.415 1.191 1.394 1.828 1.246 1.356 1.027 1.936 1775 chr9 137297035 137306960 + 0 NA intron (NM_001291921, intron 3 of 8) intron (NM_001291921, intron 3 of 8) 3569 NM_001291921 6256 Hs.590886 NM_002957 ENSG00000186350 RXRA NR2B1 retinoid X receptor alpha protein-coding nan 2.532 0.831 0.203 1.181 0.501 2.965 1.649 0.468 0.094 0.083 3.353 4.493 0.202 0.036 0.929 0.814 1.701 4.236 2.524 2.629 nan 0.135 1.449 1.365 0.596 0.999 2.974 4.548 1.232 1.131 0.673 0.727 1.728 2.561 0.350 0.223 1.708 0.793 3.638 1.534 0.334 0.207 2.965 3.353 0.940 2.783 0.270 0.074 1726 chr9 22369362 22382405 + 0 NA Intergenic Intergenic -70957 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 1.478 nan nan 0.303 0.207 0.098 0.788 0.116 0.047 0.660 0.271 0.046 0.331 0.033 0.085 0.114 0.107 0.194 0.563 0.355 0.421 3.111 0.972 0.071 0.062 2.737 3.099 0.093 0.109 2.488 2.110 0.130 0.208 4.378 5.402 0.472 0.887 5.893 2.496 0.020 0.054 1.382 0.581 0.788 0.046 0.141 0.676 0.023 0.360 463 chr12 31224483 31234447 + 0 NA intron (NM_152438, intron 1 of 26) MIRb|SINE|MIR -2684 NR_038927 100506660 Hs.586774 NR_038927 ENSG00000245614 DDX11-AS1 CONCR DDX11 antisense RNA 1 ncRNA 2.870 nan 3.682 4.888 2.574 1.209 2.288 0.912 0.033 1.739 1.150 2.672 5.365 1.555 0.101 3.179 2.958 3.005 4.326 7.747 7.128 5.487 3.192 6.340 7.147 2.325 2.932 3.905 6.207 3.038 3.316 1.659 3.083 9.534 11.768 2.505 3.127 2.338 1.328 3.321 2.665 3.737 1.617 2.288 2.672 0.652 2.744 1.240 1.111 1248 chr3 20964836 20972511 + 0 NA Intergenic AluSp|SINE|Alu -478545 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 0.558 0.633 0.539 0.046 0.342 0.239 0.083 0.203 0.105 0.102 0.151 0.016 0.194 0.015 0.049 0.743 0.549 6.080 7.081 0.111 0.233 0.092 0.039 0.238 0.166 0.655 0.816 0.369 0.378 nan 0.156 0.449 0.985 0.319 0.347 0.162 0.216 0.545 0.375 0.012 0.023 0.058 0.020 0.083 0.016 0.076 0.019 0.231 0.032 157 chr1 160369044 160382869 + 0 NA intron (NM_020335, intron 1 of 7) MIRb|SINE|MIR 5592 NM_020335 57216 Hs.99477 NM_020335 ENSG00000162738 VANGL2 LPP1|LTAP|STB1|STBM|STBM1 VANGL planar cell polarity protein 2 protein-coding 1.995 nan 1.025 0.584 0.945 0.558 5.499 0.086 0.092 0.250 0.151 2.751 3.051 0.889 0.118 1.380 1.974 1.664 2.610 4.854 nan 0.702 0.326 1.009 1.107 0.526 0.844 0.951 nan 1.104 1.085 1.432 2.639 0.374 0.246 1.607 2.593 0.432 0.573 0.544 1.812 0.083 3.129 5.499 2.751 0.345 0.030 0.799 0.924 1155 chr20 33286327 33298782 + 0 NA promoter-TSS (NM_001329431) promoter-TSS (NM_001329431) 8 NM_001329431 58476 Hs.516994 NM_021202 ENSG00000078804 TP53INP2 C20orf110|DOR|PIG-U|PINH|dJ1181N3.1 tumor protein p53 inducible nuclear protein 2 protein-coding 3.705 4.621 2.839 2.108 2.643 1.468 1.127 1.387 0.258 1.312 0.488 2.643 7.181 1.603 0.137 3.255 4.682 3.503 4.915 2.971 nan 4.195 2.131 6.806 7.385 2.232 2.580 3.796 5.439 6.267 5.796 1.061 1.860 2.313 1.904 2.467 nan 1.028 0.683 1.713 3.826 0.353 0.503 1.127 2.643 0.796 1.827 0.619 1.724 1771 chr9 136496528 136533494 + 0 NA intron (NM_000787, intron 6 of 11) intron (NM_000787, intron 6 of 11) 7519 NR_102735 138948 Hs.223858 NR_002783 ENSG00000225756 DBH-AS1 NCRNA00118 DBH antisense RNA 1 ncRNA nan 0.744 3.241 2.222 0.475 0.256 0.600 0.074 0.040 0.745 0.431 1.124 1.479 0.038 0.057 0.265 0.504 0.140 0.164 4.640 4.710 nan 0.503 0.091 0.093 0.068 0.151 2.801 2.734 1.302 1.160 0.255 0.218 0.449 0.332 0.258 0.461 2.374 1.161 3.697 0.867 0.060 0.030 0.600 1.124 0.190 0.365 0.051 0.037 30 chr1 8873587 8891075 + 0 NA Intergenic Intergenic -4632 NM_001042681 473 Hs.463041 NM_012102 ENSG00000142599 RERE ARG|ARP|ATN1L|DNB1|NEDBEH arginine-glutamic acid dipeptide repeats protein-coding 2.551 nan 3.279 7.838 1.935 1.121 1.662 1.422 0.304 1.118 0.666 1.336 4.033 1.436 0.131 1.841 2.562 1.346 2.225 6.598 7.071 3.564 0.989 3.329 3.415 2.309 nan nan 11.305 nan 3.806 2.005 3.127 1.560 1.710 2.734 4.790 1.988 0.991 2.555 3.475 0.423 0.650 1.662 1.336 0.580 1.488 1.700 1.378 253 chr10 3844395 3856968 + 0 NA Intergenic Intergenic -23208 NM_001160125 1316 Hs.4055 NM_001300 ENSG00000067082 KLF6 BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 Kruppel like factor 6 protein-coding 0.528 3.044 0.778 1.389 4.337 2.269 1.519 3.437 0.420 2.230 0.529 1.664 2.641 8.750 0.228 0.453 0.534 1.145 3.043 0.590 0.586 9.678 5.751 0.138 0.171 0.274 0.454 2.934 3.592 0.188 0.066 0.183 0.283 0.943 1.885 0.265 0.438 3.238 1.822 0.022 0.579 0.105 0.088 1.519 1.664 0.023 0.622 0.058 0.040 216 chr1 217249346 217264337 + 0 NA intron (NM_001134285, intron 1 of 8) MIR3|SINE|MIR 6146 NM_206595 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR3|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 0.879 2.156 1.555 2.893 0.931 0.449 0.571 0.352 0.195 1.705 0.880 0.824 nan 0.050 0.083 0.965 1.820 0.728 0.999 1.690 1.864 nan 1.122 0.555 0.559 0.605 nan 2.958 2.384 0.685 0.584 1.151 2.405 2.271 1.656 0.238 0.346 2.756 1.471 0.019 0.160 0.517 0.122 0.571 0.824 0.052 2.643 2.085 0.082 695 chr16 18934881 18940352 + 0 NA 5' UTR (NM_015092, exon 1 of 63) 5' UTR (NM_015092, exon 1 of 63) 110 NM_015092 23049 Hs.460179 NM_015092 ENSG00000157106 SMG1 61E3.4|ATX|LIP SMG1, nonsense mediated mRNA decay associated PI3K related kinase protein-coding 3.457 2.261 nan 5.153 3.627 1.732 2.421 2.453 0.235 1.318 0.799 2.766 8.097 2.742 0.098 3.176 3.205 2.566 3.492 3.376 3.174 9.352 3.087 10.136 10.786 1.875 2.726 10.514 17.689 nan 4.556 1.663 3.842 4.726 5.546 3.832 5.184 2.614 1.269 2.072 2.869 1.370 1.768 2.421 2.766 1.034 1.155 1.761 2.204 456 chr12 18293476 18306797 + 0 NA Intergenic Intergenic -57009 NM_001286201 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 0.802 5.577 0.824 0.401 0.277 0.205 0.459 0.147 0.069 0.130 0.148 0.027 0.937 0.049 0.118 0.187 0.121 0.333 0.528 nan 0.560 0.715 0.263 0.222 0.252 0.569 0.749 0.410 0.434 0.405 0.126 0.101 0.211 0.308 0.339 0.420 0.900 0.423 0.310 0.197 0.046 0.051 0.246 0.459 0.027 0.023 0.037 0.092 715 chr16 75271297 75302661 + 0 NA intron (NM_001170720, intron 1 of 7) intron (NM_001170720, intron 1 of 7) -1453 NM_001170717 9564 Hs.479747 NM_014567 ENSG00000050820 BCAR1 CAS|CAS1|CASS1|CRKAS|P130Cas BCAR1, Cas family scaffolding protein protein-coding 1.958 1.137 nan 0.820 0.909 0.327 1.550 1.624 0.256 0.350 0.162 1.211 2.048 0.529 0.068 1.479 2.301 0.959 1.657 1.616 1.528 1.040 0.441 2.008 1.941 1.872 2.541 1.341 2.188 2.719 2.819 0.704 0.980 0.487 0.489 0.810 1.175 1.467 0.720 0.946 0.578 0.134 0.452 1.550 1.211 1.091 0.951 0.214 0.162 58 chr1 36688292 36692649 + 0 NA intron (NM_005119, intron 1 of 11) intron (NM_005119, intron 1 of 11) 453 NM_005119 9967 Hs.744057 NM_005119 ENSG00000054118 THRAP3 TRAP150 thyroid hormone receptor associated protein 3 protein-coding 5.337 nan 4.100 7.940 3.686 1.905 2.507 4.137 0.554 2.586 1.186 5.737 9.171 5.371 0.121 3.488 2.894 6.728 9.272 9.141 7.939 nan 2.613 11.718 12.902 4.933 5.883 11.099 17.923 nan 4.229 4.118 6.545 2.188 3.096 5.811 5.402 2.779 nan 3.069 2.169 0.418 1.878 2.507 5.737 0.649 2.139 1.885 1.391 1759 chr9 129986109 130028059 + 0 NA Intergenic Intergenic -18857 NM_001286779 84253 Hs.29304 NM_032293 ENSG00000136895 GARNL3 bA356B19.1 GTPase activating Rap/RanGAP domain like 3 protein-coding nan nan 1.347 0.422 0.412 0.252 0.249 0.159 0.112 0.187 0.131 0.354 nan 0.204 0.095 0.345 0.340 0.465 0.612 0.726 0.765 nan 0.285 0.708 0.732 0.413 nan 0.683 0.964 1.244 0.863 0.213 0.304 0.287 0.281 1.136 2.520 nan 0.582 0.139 0.153 0.069 0.135 0.249 0.354 0.141 0.253 0.048 0.443 177 chr1 173223308 173249936 + 0 NA intron (NR_037845, intron 2 of 2) Charlie25|DNA|hAT-Charlie -60170 NM_003326 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 tumor necrosis factor superfamily member 4 protein-coding nan nan nan 0.122 0.166 0.111 0.222 0.520 0.133 0.099 0.146 0.032 0.310 0.064 0.115 0.586 0.572 6.653 5.089 nan 0.376 0.146 0.083 0.238 0.266 0.209 0.374 0.248 0.280 0.349 0.141 0.440 0.833 0.065 0.095 0.170 nan 0.220 0.347 0.017 0.056 0.018 0.033 0.222 0.032 0.046 0.327 0.079 1337 chr4 56410833 56415005 + 0 NA promoter-TSS (NM_001267843) promoter-TSS (NM_001267843) 157 NM_004898 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding nan 2.636 3.292 7.087 7.399 4.847 5.630 3.553 0.542 3.341 2.292 7.032 11.481 4.752 0.079 4.516 6.636 4.269 5.686 8.964 7.563 8.182 3.451 12.701 12.661 7.630 8.375 9.800 12.074 9.180 12.565 3.495 8.465 5.299 4.339 5.860 6.349 8.669 4.717 5.297 8.801 1.402 3.312 5.630 7.032 1.160 5.640 3.716 3.181 445 chr12 11896486 11912080 + 0 NA intron (NM_001987, intron 1 of 7) intron (NM_001987, intron 1 of 7) 101495 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 0.825 1.044 1.489 2.373 0.438 0.196 0.256 0.172 0.031 0.660 0.375 0.817 1.661 0.067 0.112 0.251 0.210 0.548 1.451 nan 1.168 4.642 1.671 0.477 0.484 0.430 0.543 2.120 2.188 0.353 0.198 0.264 0.339 0.234 0.344 0.391 0.614 1.264 0.658 1.020 0.405 0.037 0.035 0.256 0.817 0.012 0.078 0.062 0.158 1539 chr7 1262580 1269371 + 0 NA Intergenic Intergenic -6679 NM_001080461 340260 Hs.232272 NM_001080461 ENSG00000164853 UNCX UNCX4.1 UNC homeobox protein-coding 5.535 0.623 13.860 0.052 0.224 0.118 0.107 0.089 0.032 0.140 0.072 0.123 nan 0.098 0.142 0.246 0.198 0.111 nan 0.467 0.269 nan 0.097 0.246 0.310 0.126 0.226 nan 0.281 2.215 2.661 0.158 0.146 0.148 0.202 0.139 0.538 0.293 0.207 0.030 0.052 0.017 0.047 0.107 0.123 1.102 0.075 0.007 0.091 553 chr13 107151196 107189209 + 0 NA intron (NM_004093, intron 1 of 4) intron (NM_004093, intron 1 of 4) 17186 NM_004093 1948 Hs.149239 NM_004093 ENSG00000125266 EFNB2 EPLG5|HTKL|Htk-L|LERK5 ephrin B2 protein-coding 1.196 0.946 0.806 0.292 0.677 0.380 1.004 0.101 0.064 0.143 0.121 0.576 1.381 0.057 0.093 1.972 1.629 2.810 4.315 1.450 1.151 0.369 0.170 3.366 3.397 0.929 nan 0.971 1.035 0.586 0.558 0.644 1.799 1.295 0.871 1.345 nan 0.251 0.215 0.066 0.355 0.177 0.432 1.004 0.576 0.175 0.250 0.551 0.475 494 chr12 85861608 85886494 + 0 NA Intergenic THE1B|LTR|ERVL-MaLR 200015 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 0.771 0.914 0.752 0.253 0.409 0.207 0.119 0.352 0.143 0.475 0.257 0.324 0.653 0.052 0.111 0.355 0.248 0.294 0.382 0.417 0.461 5.007 1.593 0.292 0.334 1.111 1.302 0.642 0.712 0.524 0.221 0.137 0.235 1.603 1.891 0.433 0.619 1.227 0.777 0.018 0.068 0.418 0.047 0.119 0.324 0.012 0.196 0.075 0.204 1068 chr2 145178575 145244780 + 0 NA intron (NM_001171653, intron 2 of 8) intron (NM_001171653, intron 2 of 8) -65504 NR_040248 100303491 Hs.560789 NR_040248 ENSG00000238057 ZEB2-AS1 ZEB2-AS|ZEB2AS|ZEB2NAT ZEB2 antisense RNA 1 ncRNA 1.095 nan 1.066 0.695 1.411 0.695 0.284 0.415 0.076 0.596 0.486 0.499 0.668 0.021 0.086 0.358 0.234 9.085 11.829 0.788 0.716 0.354 0.175 0.233 0.233 1.128 1.346 0.421 0.489 1.145 0.910 0.171 0.516 0.077 0.053 0.599 1.146 0.525 0.432 0.144 0.069 0.026 0.258 0.284 0.499 0.161 0.074 0.236 0.217 49 chr1 28572742 28588682 + 0 NA Intergenic AluSz|SINE|Alu -5251 NM_031459 83667 Hs.469543 NM_031459 ENSG00000130766 SESN2 HI95|SES2|SEST2 sestrin 2 protein-coding 2.011 1.327 nan 2.110 1.401 0.926 0.487 1.144 0.231 0.640 0.290 0.466 2.862 2.550 0.162 0.709 0.940 1.236 2.090 1.640 1.569 1.871 0.373 2.951 2.998 1.439 2.103 2.477 3.089 1.577 1.461 0.750 1.422 1.124 1.345 1.705 5.694 1.146 0.621 0.759 1.021 0.197 1.206 0.487 0.466 0.353 0.651 0.417 0.388 170 chr1 167050181 167055432 + 0 NA intron (NM_005814, intron 1 of 6) L2b|LINE|L2 7062 NM_005814 10223 Hs.651244 NM_005814 ENSG00000143167 GPA33 A33 glycoprotein A33 protein-coding 1.658 nan 6.123 0.118 0.533 0.336 0.560 0.213 0.062 0.357 0.188 0.057 0.760 0.062 0.097 0.697 0.992 0.491 1.200 0.847 nan 5.292 0.809 0.225 0.205 0.600 0.977 0.986 nan 1.017 1.566 4.663 5.435 8.340 9.433 0.804 1.808 0.703 0.727 0.064 0.490 2.959 0.275 0.560 0.057 0.999 0.192 8.161 0.870 174 chr1 168194428 168201049 + 0 NA intron (NM_199344, intron 1 of 7) intron (NM_199344, intron 1 of 7) 2483 NM_199344 375035 Hs.645435 NM_199344 ENSG00000213064 SFT2D2 UNQ512|dJ747L4.C1.2 SFT2 domain containing 2 protein-coding 4.040 nan 4.486 2.611 2.275 1.211 3.291 1.354 0.108 2.031 0.782 3.621 5.814 1.712 0.195 4.121 3.754 5.983 8.219 6.288 nan 4.416 1.888 3.226 3.421 3.257 4.070 4.163 nan 2.342 2.332 8.218 13.927 3.117 3.058 2.728 3.114 2.494 1.587 1.746 3.707 0.505 0.996 3.291 3.621 0.455 1.652 11.526 0.670 1678 chr8 121455170 121459595 + 0 NA promoter-TSS (NM_022045) promoter-TSS (NM_022045) -256 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding nan nan nan 4.072 4.430 2.204 2.563 2.273 0.259 0.906 0.427 4.323 nan 1.708 0.097 4.609 4.810 6.134 7.887 9.768 10.021 8.367 4.904 20.748 23.121 4.334 4.995 3.976 5.450 7.898 7.522 5.489 9.956 4.921 4.706 6.156 6.238 2.728 1.859 2.517 2.233 0.910 1.026 2.563 4.323 0.525 2.082 2.128 1.766 1181 chr20 61445365 61472321 + 0 NA intron (NM_001853, intron 16 of 31) intron (NM_001853, intron 16 of 31) 10429 NM_001853 1299 Hs.716639 NM_001853 ENSG00000092758 COL9A3 DJ885L7.4.1|EDM3|IDD|MED collagen type IX alpha 3 chain protein-coding 1.925 1.436 0.832 0.315 0.417 0.166 0.385 0.172 0.101 0.163 0.140 0.434 1.076 0.293 0.096 3.046 nan 0.907 1.224 0.890 0.819 0.865 0.261 0.827 0.953 0.388 0.679 0.347 0.347 0.780 0.702 1.009 1.433 0.131 0.167 0.336 0.521 0.808 0.632 0.561 0.400 0.021 0.143 0.385 0.434 0.793 0.402 0.652 0.114 1668 chr8 102613377 102622015 + 0 NA intron (NM_001330593, intron 8 of 15) intron (NM_001330593, intron 8 of 15) 113028 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|TFCP2L3 grainyhead like transcription factor 2 protein-coding 1.325 nan nan 1.023 1.434 0.927 1.067 0.262 0.130 0.181 0.133 2.382 2.120 0.091 0.055 0.722 1.069 5.585 10.443 3.047 3.081 5.570 2.548 0.587 0.606 0.709 nan 1.921 nan nan 0.170 0.971 1.904 3.679 3.625 0.150 nan 1.804 1.058 0.401 0.445 0.996 0.222 1.067 2.382 0.877 0.470 0.128 1195 chr21 30443810 30451064 + 0 NA Intergenic MSTA|LTR|ERVL-MaLR -1319 NM_001282908 10694 Hs.125113 NM_006585 ENSG00000156261 CCT8 C21orf112|Cctq|D21S246|PRED71 chaperonin containing TCP1 subunit 8 protein-coding 3.813 1.959 5.030 3.682 2.142 1.257 2.495 1.382 0.174 1.290 0.886 1.746 6.983 1.793 0.120 3.799 4.126 3.292 4.254 5.294 4.975 6.148 2.622 9.091 9.488 3.225 4.231 6.998 9.904 9.185 9.456 2.170 4.416 6.287 6.176 4.012 4.144 nan 2.976 3.002 4.757 1.298 1.084 2.495 1.746 1.061 2.764 0.821 1.253 187 chr1 183619256 183625900 + 0 NA promoter-TSS (NM_203454) promoter-TSS (NM_203454) -130 NM_203454 403314 Hs.97335 NM_203454 ENSG00000173627 APOBEC4 C1orf169 apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4 protein-coding nan nan 2.213 0.187 1.647 1.010 0.232 0.531 0.097 2.475 1.206 0.144 0.592 0.115 0.125 7.122 14.203 8.747 6.723 0.953 nan 3.230 1.653 nan 6.928 3.429 4.862 2.134 3.131 2.727 3.037 6.966 11.203 5.307 3.748 0.980 nan 1.778 1.562 0.084 0.343 1.263 0.036 0.232 0.144 0.467 0.214 8.439 0.816 102 chr1 72128922 72143910 + 0 NA intron (NM_173808, intron 4 of 6) L1MEg|LINE|L1 166279 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA nan 0.767 0.933 0.211 0.478 0.219 0.153 0.060 0.084 1.120 0.653 3.316 0.588 0.029 0.132 0.325 0.226 0.225 0.291 0.765 nan 6.872 2.471 0.390 0.378 1.970 nan 0.455 0.488 0.418 0.164 0.219 0.198 1.042 0.782 0.430 0.920 1.043 0.754 0.108 0.349 0.265 0.048 0.153 3.316 0.007 0.075 0.059 0.139 361 chr11 65234823 65278884 + 0 NA Intergenic Intergenic -8356 NR_002819 378938 Hs.621695 NR_002819 MALAT1 HCN|LINC00047|NCRNA00047|NEAT2|PRO2853 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) ncRNA nan 5.178 2.823 5.361 6.029 3.243 4.439 3.126 0.691 3.213 1.435 5.253 9.932 8.527 0.288 7.859 10.469 3.015 5.853 9.875 8.078 7.644 3.832 8.429 8.788 5.928 7.464 8.264 9.537 7.120 7.105 6.498 12.284 9.450 9.569 3.657 5.052 3.270 1.865 5.618 7.761 1.907 2.399 4.439 5.253 1.306 3.831 4.494 1.467 194 chr1 201970900 202088518 + 0 NA Intergenic AluSz|SINE|Alu 50019 NM_004433 1999 Hs.603657 NM_004433 ENSG00000163435 ELF3 EPR-1|ERT|ESE-1|ESX E74 like ETS transcription factor 3 protein-coding 1.677 3.917 1.962 2.467 3.937 2.036 0.895 0.202 0.190 2.176 1.008 2.814 5.982 0.078 0.115 1.979 3.013 1.664 4.133 2.433 2.629 3.663 0.898 nan nan 0.448 0.787 4.670 5.798 0.739 0.592 1.024 1.832 3.209 2.956 0.504 1.078 1.798 0.942 2.342 4.550 1.159 0.760 0.895 2.814 0.358 0.673 1.730 0.163 185 chr1 183498035 183506156 + 0 NA intron (NM_001331007, intron 9 of 23) intron (NM_001331007, intron 9 of 23) 57644 NM_001190794 4688 Hs.587558 NM_000433 ENSG00000116701 NCF2 NCF-2|NOXA2|P67-PHOX|P67PHOX neutrophil cytosolic factor 2 protein-coding nan nan 1.230 0.172 0.300 0.177 0.137 0.423 0.158 0.210 0.203 0.088 0.316 0.143 0.171 0.661 0.701 10.427 2.495 0.466 nan 0.443 0.252 nan 0.663 0.862 1.254 0.425 0.378 0.534 0.270 0.997 1.844 0.177 0.293 0.466 nan 0.556 0.530 0.041 0.151 0.116 0.077 0.137 0.088 0.072 0.025 0.444 0.168 1445 chr6 1593639 1617020 + 0 NA promoter-TSS (NR_125804) promoter-TSS (NR_125804) -437 NR_125804 101927703 Hs.607964 NR_125804 FOXCUT LINC01379|TCONS_00011636 FOXC1 upstream transcript (non-protein coding) ncRNA 1.218 1.583 3.576 1.592 1.885 0.941 0.991 2.016 0.187 0.270 0.153 0.441 1.006 0.537 0.077 0.446 0.397 2.611 4.974 0.896 0.636 1.221 0.340 1.049 1.003 0.483 0.921 0.620 1.050 0.521 0.286 0.452 0.491 0.492 0.633 0.219 0.503 0.898 0.513 0.072 0.155 0.036 2.996 0.991 0.441 0.037 1.938 0.101 0.111 554 chr13 107857497 107871572 + 0 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) 319062 NR_031671 100302286 NR_031671 ENSG00000221650 MIR1267 MIRN1267|hsa-mir-1267 microRNA 1267 ncRNA 0.740 3.170 0.708 2.079 5.060 2.884 1.209 0.059 0.113 1.881 0.877 4.472 5.260 0.078 0.841 0.764 2.452 1.190 3.112 3.508 0.473 0.170 0.092 0.078 0.356 nan 4.099 5.533 0.459 0.179 0.137 0.199 2.263 1.917 0.204 nan 1.167 0.637 0.844 5.706 0.161 0.129 1.209 4.472 0.007 3.329 0.036 0.354 1597 chr7 103497046 103511977 + 0 NA intron (NM_173054, intron 2 of 63) MamRep137|DNA|TcMar? 125452 NM_173054 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding nan 1.278 1.154 0.683 0.885 0.420 0.180 0.166 0.050 2.393 1.056 0.836 2.030 0.055 0.159 0.436 0.337 0.633 1.000 1.150 1.572 1.884 1.244 1.582 1.461 0.484 0.643 2.267 2.728 0.815 0.585 0.484 0.515 1.803 1.745 0.667 nan 2.155 1.279 0.030 0.433 0.509 0.138 0.180 0.836 0.301 0.869 0.205 0.213 1640 chr8 53109908 53143700 + 0 NA exon (NM_014682, exon 7 of 26) exon (NM_014682, exon 7 of 26) 19882 NR_134310 101929341 Hs.147170 NR_134310 ENSG00000253551 LOC101929341 - uncharacterized LOC101929341 ncRNA 1.556 nan 0.798 0.542 0.997 0.457 0.242 0.066 0.114 0.594 0.353 1.718 0.415 0.039 0.109 0.415 0.275 0.217 0.320 1.136 1.340 1.291 0.511 0.221 0.206 0.988 nan 0.718 0.681 0.655 0.405 0.204 0.288 0.877 0.974 0.334 0.710 1.794 0.982 0.021 0.288 0.226 0.152 0.242 1.718 0.203 0.174 0.055 0.160 1446 chr6 1669351 1694988 + 0 NA intron (NM_001500, intron 9 of 10) AluJo|SINE|Alu 71488 NM_001453 2296 Hs.348883 NM_001453 ENSG00000054598 FOXC1 ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 1.009 0.957 1.463 0.846 0.565 0.366 0.329 1.044 0.164 0.365 0.178 0.319 0.219 0.063 0.114 0.473 0.342 2.062 4.421 0.521 0.485 0.330 0.177 0.455 0.427 0.675 1.062 0.513 0.805 0.470 0.332 0.207 0.301 0.223 0.245 0.258 0.383 1.056 0.597 0.055 0.106 0.018 0.136 0.329 0.319 0.170 0.435 0.078 0.077 1795 chrX 153143169 153177203 + 0 NA Intergenic Intergenic -7799 NR_027419 554 Hs.567240 NM_000054 ENSG00000126895 AVPR2 ADHR|DI1|DIR|DIR3|NDI|V2R arginine vasopressin receptor 2 protein-coding 1.576 0.804 1.181 0.187 1.013 0.480 0.953 0.046 0.052 0.138 0.104 0.622 0.989 0.054 0.054 1.028 2.133 0.169 0.251 1.313 1.328 0.773 0.252 0.175 0.183 0.341 0.555 0.225 0.353 3.185 3.325 0.448 0.624 0.331 0.382 0.562 1.167 0.469 0.352 0.668 2.095 0.093 0.378 0.953 0.622 0.639 0.227 0.338 0.232 893 chr18 55364656 55387501 + 0 NA intron (NM_005603, intron 2 of 27) intron (NM_005603, intron 2 of 27) 78544 NM_001242804 100505549 Hs.660645 NM_001242804 LOC100505549 - uncharacterized LOC100505549 protein-coding nan 1.026 1.075 0.290 0.808 0.445 0.658 0.245 0.085 0.324 0.207 2.382 0.487 0.066 0.082 0.505 0.472 0.516 1.621 0.674 0.898 8.494 4.500 3.711 4.055 0.265 0.403 1.289 1.364 0.574 0.768 1.049 1.495 1.314 1.887 0.296 0.522 nan 1.973 0.188 0.308 0.359 0.289 0.658 2.382 0.064 0.357 0.618 0.251 277 chr10 103872344 103883683 + 0 NA intron (NM_001113407, intron 1 of 10) intron (NM_001113407, intron 1 of 10) 2217 NM_001113407 8861 Hs.454418 NM_003893 ENSG00000198728 LDB1 CLIM-2|CLIM2|LDB-1|NLI LIM domain binding 1 protein-coding nan nan 4.091 1.679 4.484 2.280 2.244 1.667 0.347 1.245 0.773 4.371 6.215 2.377 0.106 3.462 4.700 2.033 2.680 4.879 5.020 2.547 0.897 1.441 1.632 2.404 nan 6.318 6.889 2.305 2.771 1.732 2.713 1.894 1.640 2.894 nan 1.199 0.578 2.792 2.611 0.864 0.832 2.244 4.371 1.036 2.079 1.819 3.400 586 chr14 37252542 37278936 + 0 NA intron (NM_030631, intron 3 of 9) L2c|LINE|L2 138966 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 1.376 0.869 0.937 1.241 1.492 0.832 0.213 0.167 0.085 0.434 0.351 0.635 6.923 0.054 0.114 0.220 0.163 0.176 0.266 2.622 2.828 2.384 0.823 0.271 0.275 0.349 0.488 2.454 2.816 0.576 0.233 0.448 0.445 4.916 4.286 0.150 0.194 0.696 0.606 5.052 1.975 1.651 0.081 0.213 0.635 0.110 0.220 0.506 0.089 875 chr18 47337144 47341535 + 0 NA intron (NM_006111, intron 1 of 9) intron (NM_006111, intron 1 of 9) 912 NM_006111 10449 Hs.200136 NM_006111 ENSG00000167315 ACAA2 DSAEC acetyl-CoA acyltransferase 2 protein-coding nan 4.916 4.168 6.518 5.326 2.592 9.360 1.578 0.109 1.895 0.636 6.040 18.205 3.763 0.147 5.978 7.651 5.649 9.148 13.266 11.803 14.459 4.744 4.241 4.549 3.803 4.389 5.437 8.596 5.869 6.868 3.435 6.776 8.577 7.871 4.218 nan 6.548 3.510 5.070 4.140 1.970 3.102 9.360 6.040 2.121 3.265 2.297 3.713 995 chr19 56090956 56099053 + 0 NA Intergenic AluSz|SINE|Alu -2793 NM_152600 163033 Hs.112529 NM_152600 ENSG00000218891 ZNF579 - zinc finger protein 579 protein-coding 3.219 2.073 3.748 2.293 7.126 3.695 2.876 0.795 0.039 1.257 0.731 4.330 4.741 5.750 0.170 3.524 4.992 1.620 2.083 5.335 5.328 8.078 2.016 0.890 0.877 2.122 2.839 3.815 5.006 4.981 3.813 1.885 3.260 2.839 2.431 3.422 5.749 2.963 1.415 1.631 3.556 0.694 1.351 2.876 4.330 1.230 1.979 1.672 2.123 196 chr1 202774365 202781138 + 0 NA 5' UTR (NM_001314042, exon 1 of 28) 5' UTR (NM_001314042, exon 1 of 28) 847 NM_006618 10765 Hs.18891 NM_006618 ENSG00000117139 KDM5B CT31|JARID1B|PLU-1|PLU1|PPP1R98|PUT1|RBBP2H1A|RBP2-H1 lysine demethylase 5B protein-coding 4.929 3.745 3.978 3.233 4.791 2.714 4.774 1.839 0.259 3.715 1.371 4.727 10.399 3.660 0.203 2.283 3.516 7.453 9.481 7.715 6.953 7.945 2.757 nan nan 3.357 4.098 6.631 9.033 3.647 3.802 1.467 3.951 1.819 2.067 3.395 5.114 2.822 1.621 4.713 8.519 0.339 1.751 4.774 4.727 0.927 3.292 1.932 1.048 965 chr19 42745435 42761713 + 0 NA exon (NM_006494, exon 4 of 4) exon (NM_006494, exon 4 of 4) 4477 NM_001308402 2077 Hs.655969 NM_006494 ENSG00000105722 ERF CHYTS|CRS4|PE-2|PE2 ETS2 repressor factor protein-coding 3.988 2.286 2.648 2.029 2.736 1.531 3.170 1.831 0.404 1.242 0.749 2.860 4.809 6.165 0.160 2.443 3.322 2.765 4.124 3.456 3.445 4.419 1.780 6.348 6.521 3.310 4.940 3.739 5.193 2.725 2.568 1.764 2.935 3.105 3.182 2.832 4.269 2.611 1.470 1.471 2.502 0.944 1.673 3.170 2.860 1.332 1.702 1.641 1.420 871 chr18 45455869 45459903 + 0 NA promoter-TSS (NM_005901) promoter-TSS (NM_005901) -369 NM_001003652 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding nan 4.269 6.331 7.716 5.912 3.191 11.950 2.123 0.206 1.593 0.713 8.259 12.287 4.201 0.092 7.791 8.645 8.366 10.998 14.242 10.820 13.561 8.346 11.573 11.123 2.755 3.827 6.557 10.745 6.195 6.655 4.145 7.434 9.556 8.772 5.852 nan 5.149 3.072 6.011 4.954 2.610 3.576 11.950 8.259 1.638 3.779 1.695 3.951 495 chr12 95976121 95989936 + 0 NA Intergenic Intergenic -37762 NM_032147 84101 Hs.646421 NM_032147 ENSG00000136014 USP44 - ubiquitin specific peptidase 44 protein-coding 0.736 0.758 0.884 0.140 0.307 0.127 0.152 0.264 0.220 0.512 0.389 0.562 nan 0.054 0.142 0.313 0.194 0.285 0.829 0.543 0.585 0.769 0.180 0.279 0.281 0.690 nan 0.489 nan 0.388 0.171 0.172 0.282 0.182 0.213 0.341 0.671 3.351 1.594 0.032 0.085 0.028 0.057 0.152 0.562 0.028 0.632 0.044 0.099 786 chr17 41462790 41497820 + 0 NA Intergenic Intergenic 3952 NM_001661 379 Hs.183153 NM_001661 ENSG00000175906 ARL4D ARF4L|ARL6 ADP ribosylation factor like GTPase 4D protein-coding 2.803 2.801 nan 2.237 2.761 1.532 1.092 0.975 0.284 1.149 0.637 0.929 3.665 0.989 0.126 2.167 2.492 1.589 2.377 2.533 nan 1.708 0.759 3.648 3.898 1.655 2.266 0.704 nan 3.230 2.593 1.181 1.518 2.356 2.505 2.744 8.404 2.182 1.309 1.287 1.852 0.776 0.725 1.092 0.929 1.156 0.992 0.614 2.460 1638 chr8 49782256 49793545 + 0 NA Intergenic L1MD1|LINE|L1 46099 NM_003068 6591 Hs.360174 NM_003068 ENSG00000019549 SNAI2 SLUG|SLUGH|SLUGH1|SNAIL2|WS2D snail family transcriptional repressor 2 protein-coding 1.617 nan 1.756 0.039 0.175 0.063 0.251 0.193 0.102 1.102 0.351 0.053 0.564 0.039 0.087 0.403 0.268 0.232 0.412 0.752 0.634 5.320 2.027 0.201 0.131 0.395 0.726 0.093 0.065 0.464 0.302 0.259 0.407 4.157 4.864 0.223 0.477 2.388 1.167 0.025 0.063 1.326 0.049 0.251 0.053 0.102 0.134 0.061 0.100 720 chr16 84763198 84769190 + 0 NA intron (NM_001272075, intron 2 of 14) AluSz|SINE|Alu 32639 NR_073578 9100 Hs.136778 NM_005153 ENSG00000103194 USP10 UBPO ubiquitin specific peptidase 10 protein-coding nan 1.428 1.014 1.337 0.684 0.367 0.383 1.483 0.160 0.491 0.313 1.224 1.283 0.866 0.058 0.708 0.782 0.965 2.264 0.596 0.577 1.064 0.327 1.135 1.126 2.326 2.476 5.753 8.621 0.960 0.750 0.422 0.585 0.497 2.009 0.540 1.376 1.705 0.943 0.675 0.370 0.078 0.147 0.383 1.224 0.307 4.857 0.202 0.123 1405 chr5 71196518 71205204 + 0 NA Intergenic Intergenic 185871 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 1.453 nan 1.227 0.102 6.179 3.379 3.688 0.252 0.038 0.616 0.316 0.128 1.550 0.025 0.068 0.267 0.572 0.511 0.559 0.422 0.455 10.475 3.860 0.128 0.158 0.828 nan 0.644 0.674 1.978 1.764 0.599 1.669 8.781 12.082 0.896 3.404 2.414 0.944 0.287 1.107 3.127 0.458 3.688 0.128 0.224 0.233 2.457 1.371 919 chr19 6048034 6076000 + 0 NA intron (NM_134433, intron 1 of 16) AluJb|SINE|Alu 48647 NM_000635 5990 Hs.465709 NM_000635 ENSG00000087903 RFX2 - regulatory factor X2 protein-coding 2.252 2.283 0.897 1.571 3.387 1.802 1.038 0.453 0.104 1.629 0.801 3.885 3.995 0.058 0.079 0.262 0.185 0.256 0.609 2.451 3.045 1.042 1.562 0.231 0.267 2.036 2.960 3.043 nan 1.062 0.757 0.123 0.212 1.685 0.997 0.190 0.207 3.667 2.277 0.515 0.551 0.224 0.023 1.038 3.885 0.446 1.437 0.014 0.088 882 chr18 52980024 52995103 + 0 NA intron (NM_001243228, intron 8 of 19) intron (NM_001243228, intron 8 of 19) 1527 NM_001243234 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding nan 1.867 1.301 0.245 1.833 0.913 0.483 2.063 0.106 1.038 0.769 0.889 0.364 1.519 0.063 2.968 3.000 4.535 5.279 5.249 4.990 2.037 0.780 1.419 1.496 2.613 3.138 1.050 1.026 10.404 10.980 0.872 1.424 5.899 6.671 2.815 3.068 7.507 3.500 0.265 0.387 1.420 3.526 0.483 0.889 1.028 1.045 0.746 1.371 951 chr19 36247646 36250858 + 0 NA intron (NM_001039887, intron 1 of 11) CpG 208 NM_001039887 148137 Hs.527982 NM_144692 ENSG00000167595 PROSER3 C19orf55 proline and serine rich 3 protein-coding 7.857 3.345 3.931 10.998 4.906 2.717 4.386 2.260 0.389 1.673 1.231 4.655 23.091 4.993 0.218 3.618 3.646 4.449 6.411 7.626 6.907 8.632 3.188 8.735 9.516 6.059 7.277 6.761 8.003 nan 8.126 4.255 6.377 4.855 5.068 5.000 7.981 3.968 2.371 3.938 5.422 1.278 2.287 4.386 4.655 1.511 3.616 3.072 3.329 532 chr13 50224730 50246181 + 0 NA intron (NM_032565, intron 3 of 3) intron (NM_032565, intron 3 of 3) 30168 NM_032565 84650 Hs.433278 NM_032565 ENSG00000123179 EBPL EBRP emopamil binding protein like protein-coding 1.208 nan nan 0.248 0.145 0.105 0.180 0.146 0.099 0.116 0.099 0.242 0.180 0.065 0.092 0.556 0.594 0.181 0.209 0.480 0.604 nan 0.316 0.295 0.300 0.302 0.476 0.615 0.478 0.851 0.619 0.280 0.429 0.144 0.136 1.599 nan 0.299 0.230 0.081 0.252 0.031 0.109 0.180 0.242 0.045 0.080 0.088 0.951 721 chr16 85960894 85982383 + 0 NA Intergenic MLT1L|LTR|ERVL-MaLR 19685 NR_106832 102466732 NR_106832 ENSG00000274134 MIR6774 hsa-mir-6774 microRNA 6774 ncRNA nan 0.542 0.619 0.074 0.154 0.082 0.118 0.070 0.037 0.014 0.021 0.051 0.206 0.045 0.062 0.171 0.107 0.067 0.114 0.139 0.228 0.108 0.048 0.112 0.177 0.084 0.194 0.151 0.170 0.372 0.194 0.070 0.108 0.049 0.038 0.049 0.186 0.229 0.340 4.210 0.042 0.022 0.022 0.118 0.051 0.265 0.019 0.009 0.023 852 chr18 22000401 22016815 + 0 NA intron (NM_018439, intron 2 of 10) intron (NM_018439, intron 2 of 10) 1999 NM_018439 55364 Hs.515317 NM_018439 ENSG00000154059 IMPACT RWDD5 impact RWD domain protein protein-coding 1.674 1.213 1.472 1.526 0.744 0.304 0.941 0.359 0.118 0.627 0.420 0.518 1.287 0.561 0.118 1.613 1.327 0.294 nan 1.042 1.053 5.493 2.054 0.991 0.938 1.280 1.593 1.037 1.302 2.056 1.907 0.513 0.603 2.325 2.346 1.294 1.650 3.131 1.818 0.567 0.395 0.398 0.434 0.941 0.518 0.431 0.569 0.181 0.702 627 chr14 105210843 105220649 + 0 NA Intergenic MER54A|LTR|ERVL -3724 NM_021709 10572 Hs.112058 NM_006427 ENSG00000184990 SIVA1 CD27BP|SIVA|Siva-1|Siva-2 SIVA1 apoptosis inducing factor protein-coding 4.506 1.765 2.704 4.585 1.909 0.929 1.853 1.041 0.412 1.221 1.098 2.222 4.131 1.361 0.101 1.952 1.653 2.033 2.974 4.577 4.857 3.953 1.900 1.376 1.424 1.756 2.568 3.301 5.388 3.480 3.476 1.275 2.044 2.317 2.425 1.531 1.357 4.742 2.166 2.229 1.925 0.388 0.991 1.853 2.222 0.867 3.046 0.314 0.392 1578 chr7 55431644 55435989 + 0 NA exon (NM_018697, exon 1 of 9) exon (NM_018697, exon 1 of 9) 675 NM_018697 55915 Hs.595384 NM_018697 ENSG00000132434 LANCL2 GPR69B|TASP LanC like 2 protein-coding nan 7.601 11.356 6.707 6.270 3.249 6.998 3.108 0.295 4.842 2.351 10.190 12.564 6.936 0.257 14.310 13.966 10.339 13.266 18.601 17.008 13.487 6.255 12.440 12.384 5.168 6.788 16.809 21.261 8.938 9.596 6.766 12.748 8.574 7.075 7.687 5.734 5.414 3.021 10.576 4.018 1.209 3.728 6.998 10.190 1.830 5.468 2.943 2.337 1384 chr5 49961412 49966691 + 0 NA intron (NM_001331028, intron 2 of 25) intron (NM_001331028, intron 2 of 25) 671 NM_001331028 79668 Hs.369581 NM_024615 ENSG00000151883 PARP8 ARTD16|pART16 poly(ADP-ribose) polymerase family member 8 protein-coding 2.287 7.535 2.105 0.603 0.416 0.397 2.671 0.723 0.245 2.043 0.864 1.956 14.292 7.300 0.188 1.594 2.459 6.925 9.797 6.126 5.196 10.656 4.772 7.992 7.163 0.165 0.356 1.816 3.851 3.188 4.843 8.896 13.349 0.733 0.724 0.385 0.454 2.395 1.667 4.440 10.413 0.484 1.116 2.671 1.956 3.386 6.274 0.583 382 chr11 77849396 77862141 + 0 NA intron (NR_102280, intron 2 of 3) AluSq4|SINE|Alu 4929 NR_102280 100289388 Hs.628183 NM_203432 ENSG00000246174 KCTD21-AS1 - KCTD21 antisense RNA 1 ncRNA nan 1.606 1.120 1.108 1.230 0.617 1.042 0.532 0.126 0.672 0.480 2.633 2.850 1.368 0.136 1.701 1.569 1.335 2.003 3.491 4.217 6.040 1.771 4.436 4.669 2.051 2.638 2.412 2.911 1.414 1.097 0.853 1.320 1.751 1.872 0.948 1.269 1.872 1.069 0.968 1.467 0.285 1.072 1.042 2.633 0.372 0.709 0.248 0.363 413 chr11 126918742 126952463 + 0 NA Intergenic AluSg|SINE|Alu -1295 NR_120578 101929473 Hs.737523 NR_120578 ENSG00000255087 LOC101929473 - uncharacterized LOC101929473 ncRNA 0.563 1.691 0.872 0.440 1.198 0.604 1.043 0.033 0.014 0.343 0.181 0.430 0.851 0.029 0.107 0.665 0.497 0.167 0.248 0.671 0.794 4.154 0.986 0.117 0.130 0.219 0.285 1.378 1.173 0.543 0.455 0.723 0.826 1.592 1.711 0.200 nan 2.701 1.565 0.110 0.363 0.360 0.091 1.043 0.430 0.044 0.051 0.258 0.098 1693 chr8 143680445 143705763 + 0 NA 3' UTR (NM_015193, exon 3 of 3) 3' UTR (NM_015193, exon 3 of 3) 2729 NM_015193 23237 Hs.40888 NM_015193 ENSG00000198576 ARC Arg3.1 activity regulated cytoskeleton associated protein protein-coding 2.373 1.005 nan 0.152 1.421 0.827 1.780 0.081 0.082 0.254 0.193 0.491 2.226 0.072 0.043 0.834 1.288 0.095 0.205 nan 2.616 nan 0.163 0.262 0.215 0.410 0.746 0.730 0.982 1.561 1.787 0.558 0.677 0.607 0.411 0.432 0.686 1.702 0.937 1.420 0.901 0.079 0.047 1.780 0.491 0.928 1.257 0.214 0.064 220 chr1 226248030 226256464 + 0 NA intron (NM_002107, intron 2 of 3) intron (NM_002107, intron 2 of 3) 1819 NR_002315 440926 Hs.533624 NR_002315 H3F3AP4 p13 H3 histone, family 3A, pseudogene 4 pseudo 7.677 nan 8.158 8.028 7.683 4.142 4.634 3.343 0.344 4.667 1.718 6.809 10.016 4.808 0.193 8.765 8.226 11.614 15.019 13.221 nan 6.839 2.723 16.169 16.035 3.939 4.905 7.731 11.351 7.838 9.442 2.466 4.228 6.336 5.631 7.121 7.369 3.206 1.615 6.913 3.001 1.704 3.293 4.634 6.809 1.081 2.368 1.409 2.252 1620 chr7 148578618 148583032 + 0 NA promoter-TSS (NM_001203249) promoter-TSS (NM_001203249) -224 NM_001203249 2146 Hs.444082 NM_004456 ENSG00000106462 EZH2 ENX-1|ENX1|EZH1|EZH2b|KMT6|KMT6A|WVS|WVS2 enhancer of zeste 2 polycomb repressive complex 2 subunit protein-coding 9.188 3.640 6.562 6.946 7.420 3.911 7.441 3.150 0.809 4.202 2.014 11.515 11.514 8.331 0.273 7.605 8.745 8.222 10.434 12.047 9.855 9.930 5.270 18.910 19.699 4.448 6.310 6.053 11.235 8.529 10.305 7.251 13.371 13.008 14.398 11.540 8.325 4.714 nan 5.216 7.183 3.581 3.806 7.441 11.515 1.929 5.529 3.121 2.140 399 chr11 113642587 113654309 + 0 NA Intergenic LTR5A|LTR|ERVK -2070 NM_001101389 644672 Hs.705360 NM_001101389 ENSG00000228607 CLDN25 - claudin 25 protein-coding 1.108 1.197 1.173 0.747 0.875 0.564 0.612 0.300 0.137 0.807 0.349 0.592 2.176 0.633 0.091 6.039 nan 2.253 3.142 1.642 1.533 1.853 0.666 1.270 1.307 1.360 nan 1.435 1.676 1.180 1.173 1.757 2.859 0.609 0.769 0.698 1.172 1.835 1.222 0.505 0.303 0.089 0.249 0.612 0.592 0.314 0.347 1.152 0.210 682 chr16 3054048 3064673 + 0 NA Intergenic Intergenic -3097 NM_020982 9080 Hs.296949 NM_020982 ENSG00000213937 CLDN9 - claudin 9 protein-coding 0.951 nan 1.166 0.824 4.070 2.452 1.300 0.064 0.106 0.843 0.518 4.119 2.527 0.866 0.083 0.920 1.749 0.245 0.438 5.227 5.582 nan 0.484 0.419 0.424 0.431 nan 1.827 2.883 0.770 0.504 0.417 0.709 1.258 0.846 0.433 0.898 1.634 1.003 3.735 6.722 0.285 2.509 1.300 4.119 0.941 0.383 0.354 0.128 1029 chr2 28657846 28661804 + 0 NA Intergenic Intergenic -42286 NR_103831 403150 Hs.562970 NR_103831 ENSG00000229951 FLJ31356 - uncharacterized protein FLJ31356 ncRNA 2.176 3.588 1.753 2.510 0.195 0.040 0.258 0.095 0.161 0.146 0.126 0.153 8.749 0.060 0.115 0.348 0.610 0.897 4.414 0.497 0.350 0.958 0.414 0.479 0.513 0.389 0.852 3.006 nan 0.640 0.569 0.352 0.799 0.499 0.335 0.236 0.325 1.225 0.826 2.054 0.520 0.024 0.160 0.258 0.153 3.538 2.963 0.327 0.093 1114 chr2 233350649 233358146 + 0 NA Intergenic Intergenic -1828 NM_004826 9427 Hs.26880 NM_004826 ENSG00000171551 ECEL1 DA5D|DINE|ECEX|XCE endothelin converting enzyme like 1 protein-coding 1.265 nan 1.130 0.199 0.524 0.273 0.664 0.066 0.065 0.130 0.054 0.047 0.703 0.280 0.064 0.364 0.286 0.684 0.894 0.749 0.514 0.427 0.153 0.496 0.634 0.067 0.183 0.843 nan 0.339 0.257 0.212 0.194 0.165 0.181 0.866 2.510 0.232 0.279 0.496 0.036 0.013 0.021 0.664 0.047 0.089 6.033 0.027 0.428 108 chr1 94039564 94070629 + 0 NA intron (NM_001261408, intron 6 of 13) intron (NM_001261408, intron 6 of 13) -2429 NR_034091 100129046 Hs.729244 NR_034091 LOC100129046 - uncharacterized LOC100129046 ncRNA nan nan 1.479 0.671 0.643 0.295 1.449 1.753 0.295 0.388 0.255 0.581 1.860 0.101 0.117 0.486 0.653 0.415 0.783 1.353 nan 1.872 0.525 0.667 0.685 1.836 nan 4.183 4.493 nan 0.418 0.503 0.449 1.235 0.843 0.507 0.839 1.530 0.820 2.107 0.527 0.316 0.123 1.449 0.581 0.066 0.667 0.437 0.245 826 chr17 76960521 76984238 + 0 NA intron (NM_005567, intron 2 of 5) intron (NM_005567, intron 2 of 5) 3682 NM_005567 3959 Hs.514535 NM_005567 ENSG00000108679 LGALS3BP 90K|BTBD17B|CyCAP|M2BP|MAC-2-BP|TANGO10B|gp90 galectin 3 binding protein protein-coding 2.002 2.157 2.451 1.495 1.714 0.945 1.152 1.193 0.386 1.141 0.671 1.009 2.794 0.182 0.098 1.803 2.690 0.821 1.332 2.409 2.544 3.653 0.934 0.606 0.603 nan 1.368 3.661 4.160 2.614 2.983 1.057 1.781 1.198 1.505 0.492 0.868 nan 0.758 0.942 2.535 0.257 0.718 1.152 1.009 0.367 1.556 0.682 0.109 137 chr1 155176128 155180181 + 0 NA promoter-TSS (NM_002455) promoter-TSS (NM_002455) -336 NM_198883 4580 Hs.490874 NM_002455 ENSG00000173171 MTX1 MTX|MTXN metaxin 1 protein-coding nan nan 5.782 5.056 5.533 3.206 7.245 2.302 0.718 3.754 1.544 7.490 24.545 8.642 0.263 7.602 10.786 5.677 8.384 11.997 nan 9.149 5.991 7.128 7.842 7.434 8.961 6.982 14.412 9.051 10.491 7.082 11.432 7.852 4.747 12.482 11.775 3.999 1.880 4.824 6.429 1.581 2.860 7.245 7.490 3.503 7.095 3.324 2.713 258 chr10 13177395 13185231 + 0 NA Intergenic Intergenic -22241 NM_018518 55388 Hs.198363 NM_018518 ENSG00000065328 MCM10 CNA43|DNA43|PRO2249 minichromosome maintenance 10 replication initiation factor protein-coding nan 0.701 0.817 0.323 0.409 0.164 0.317 0.297 0.230 0.101 0.083 0.342 0.257 0.068 0.085 0.457 0.349 0.301 0.408 1.217 1.345 1.640 0.325 0.168 0.288 0.427 0.585 1.505 1.673 0.660 1.093 0.131 0.229 0.503 0.411 0.270 0.497 0.332 0.369 0.044 0.443 0.049 4.423 0.317 0.342 0.176 0.052 0.025 0.215 1196 chr21 30627099 30636022 + 0 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) -39556 NM_001186 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 0.996 0.821 4.273 1.079 0.569 0.271 0.073 0.243 0.036 0.473 0.287 0.272 0.687 0.072 0.101 0.346 0.379 0.222 0.460 2.104 2.144 0.186 0.101 0.199 0.294 1.276 2.032 0.324 0.261 1.180 0.544 0.143 0.258 1.605 2.312 0.514 1.326 nan 2.449 0.037 0.090 0.525 0.026 0.073 0.272 0.120 0.092 0.055 0.207 644 chr15 37383875 37406845 + 0 NA Intergenic Intergenic -1860 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 HsT18361|MRG1 Meis homeobox 2 protein-coding 2.871 nan nan 0.818 1.154 0.623 1.762 2.115 0.315 1.376 1.060 0.459 2.800 4.433 0.128 1.250 2.091 0.647 0.996 2.794 2.525 1.391 0.544 1.519 1.576 2.259 3.084 1.230 2.031 2.067 2.178 1.473 3.295 8.401 6.860 4.072 4.156 1.094 0.706 0.630 1.180 2.818 1.573 1.762 0.459 0.314 0.194 1.349 1.679 1569 chr7 30588324 30604880 + 0 NA intron (NR_038889, intron 5 of 6) L2b|LINE|L2 20793 NR_038889 401320 Hs.561708 NR_038889 LOC401320 - uncharacterized LOC401320 ncRNA 1.868 3.875 2.315 0.396 0.967 0.522 6.098 0.450 0.078 0.965 0.570 1.806 6.650 0.132 0.197 0.803 0.833 1.379 1.938 1.242 nan 6.271 3.894 0.696 0.772 0.957 nan nan nan 0.608 0.453 0.439 0.812 2.901 3.565 0.410 nan 2.260 1.504 0.582 0.632 0.735 1.048 6.098 1.806 0.319 0.289 0.387 0.199 1349 chr4 111536778 111545268 + 0 NA intron (NM_153427, intron 4 of 4) intron (NM_153427, intron 4 of 4) 3231 NM_000325 5308 Hs.643588 NM_000325 ENSG00000164093 PITX2 ARP1|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS paired like homeodomain 2 protein-coding 0.457 0.693 0.426 0.078 0.114 0.056 0.106 0.991 0.056 0.054 0.058 0.057 2.262 0.319 0.091 1.050 1.802 9.414 10.341 0.104 0.156 0.046 0.061 0.138 0.170 0.146 0.206 1.566 2.021 0.296 0.190 0.290 0.993 1.526 0.854 0.306 0.638 0.257 0.168 0.356 0.302 0.101 0.106 0.057 0.024 1.147 0.269 0.161 1370 chr5 3749246 3756420 + 0 NA Intergenic Intergenic 156665 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 0.367 0.735 0.758 0.099 0.128 0.067 0.123 0.067 0.181 0.147 0.056 0.349 0.031 0.119 3.292 1.638 7.847 nan 0.469 0.541 0.089 0.042 0.020 0.065 0.209 0.236 nan 0.216 nan 0.355 0.628 0.948 0.063 0.041 0.103 0.155 0.160 nan 0.024 0.049 0.013 0.123 0.056 0.081 0.028 0.389 0.017 189 chr1 183984672 184009704 + 0 NA intron (NM_001303421, intron 1 of 11) intron (NM_001303421, intron 1 of 11) 9716 NM_001303420 23127 Hs.387995 NM_015101 ENSG00000198756 COLGALT2 C1orf17|GLT25D2 collagen beta(1-O)galactosyltransferase 2 protein-coding nan nan 1.795 0.190 0.254 0.128 0.819 0.782 0.232 0.172 0.228 0.082 0.617 1.322 0.136 1.270 1.434 0.614 1.016 0.680 nan 0.282 0.115 nan 0.495 6.440 7.929 0.418 0.378 1.281 1.181 0.736 1.259 2.164 1.509 0.668 nan 0.599 0.598 0.060 0.153 0.533 0.204 0.819 0.082 0.121 0.033 0.432 0.188 1661 chr8 92664754 92676908 + 0 NA Intergenic THE1B|LTR|ERVL-MaLR 359077 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 translocation partner 1 protein-coding nan 0.945 2.261 0.188 0.362 0.200 0.125 0.120 0.079 0.026 0.066 0.166 0.277 0.009 0.087 0.201 0.305 0.268 nan 0.559 0.721 0.427 0.153 0.187 0.111 1.569 1.559 0.667 0.700 5.701 5.907 0.106 0.157 0.287 0.438 1.831 5.786 0.299 0.302 0.050 0.089 0.063 1.195 0.125 0.166 0.548 0.041 0.065 5.017 946 chr19 33781376 33794821 + 0 NA Intergenic AluJr4|SINE|Alu 5372 NM_004364 1050 Hs.76171 NM_004364 ENSG00000245848 CEBPA C/EBP-alpha|CEBP CCAAT/enhancer binding protein alpha protein-coding 0.800 1.192 0.904 0.510 0.374 0.198 0.228 0.122 0.071 0.110 0.080 0.135 9.086 0.927 0.098 1.085 1.424 4.140 5.632 0.431 0.370 0.776 0.124 0.430 0.401 0.323 0.801 0.148 0.224 nan 0.929 1.973 2.541 0.214 0.338 0.258 0.297 0.369 0.422 0.730 0.456 0.022 0.053 0.228 0.135 0.353 0.279 1.138 0.074 169 chr1 166939856 166951647 + 0 NA intron (NM_001286378, intron 1 of 12) L2c|LINE|L2 932 NM_001286378 84944 Hs.651245 NM_032858 ENSG00000143194 MAEL CT128|SPATA35 maelstrom spermatogenic transposon silencer protein-coding 0.874 nan 1.262 0.424 2.414 1.099 1.283 0.121 0.190 0.526 0.425 1.277 1.701 0.128 0.089 0.486 0.492 0.568 0.719 6.713 nan 5.988 1.507 0.198 0.192 0.736 1.253 0.843 nan 0.401 0.248 0.517 0.851 0.348 0.278 0.257 0.619 3.307 1.654 0.085 2.526 0.049 0.082 1.283 1.277 0.066 0.063 0.193 0.096 1209 chr21 44435823 44458102 + 0 NA intron (NM_004571, intron 9 of 10) intron (NM_004571, intron 9 of 10) 41552 NM_001321072 875 Hs.533013 NM_000071 ENSG00000160200 CBS HIP4 cystathionine-beta-synthase protein-coding nan 0.674 1.036 0.122 0.322 0.170 0.184 0.122 0.079 0.090 0.090 0.107 0.463 0.087 0.081 0.916 1.221 4.522 7.535 0.452 0.501 nan 0.111 0.397 0.451 0.489 nan 0.368 0.483 0.510 0.316 0.344 0.482 0.109 0.124 0.384 0.741 0.617 0.466 0.175 0.158 0.022 0.079 0.184 0.107 0.031 0.046 0.084 0.105 894 chr18 56881936 56899650 + 0 NA intron (NM_001012512, intron 1 of 2) intron (NM_001012512, intron 1 of 2) 3393 NM_002091 2922 Hs.153444 NM_002091 ENSG00000134443 GRP BN|GRP-10|preproGRP|proGRP gastrin releasing peptide protein-coding nan 1.212 0.744 3.502 0.265 0.136 0.312 0.027 0.018 0.273 0.224 4.127 6.385 0.025 0.060 0.370 0.191 0.167 0.216 7.474 8.687 2.316 0.612 0.363 0.366 0.124 0.199 5.960 4.539 0.335 0.200 0.133 0.170 1.458 0.798 0.178 0.344 nan 2.022 0.351 0.181 0.385 0.081 0.312 4.127 0.044 1.021 0.022 0.035 179 chr1 173833585 173838251 + 0 NA promoter-TSS (NR_002750) promoter-TSS (NR_002750) -65 NR_003942 692196 NR_003942 SNORD76 U76 small nucleolar RNA, C/D box 76 snoRNA 4.485 nan nan 3.428 3.935 1.763 2.509 3.108 0.552 2.607 1.386 3.687 7.873 6.243 0.230 5.164 5.413 8.101 12.252 nan 5.311 7.540 3.437 9.870 9.881 4.180 5.902 7.761 8.283 6.692 7.660 4.814 8.353 4.123 3.936 14.818 9.474 2.994 1.542 2.113 5.092 0.849 1.427 2.509 3.687 1.366 2.347 2.508 3.133 1386 chr5 50328642 50357255 + 0 NA Intergenic Intergenic -76927 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA nan nan 0.659 0.271 0.287 0.184 0.375 0.056 0.061 0.093 0.104 0.112 0.609 0.057 0.114 0.175 0.098 0.733 1.987 0.304 0.458 nan 0.467 0.061 0.083 0.747 0.798 0.356 0.302 nan 1.552 0.058 0.141 6.127 7.594 0.108 0.168 0.450 0.370 0.244 0.115 2.138 0.066 0.375 0.112 0.417 0.092 0.024 0.069 1711 chr9 3396258 3414310 + 0 NA intron (NM_001282116, intron 1 of 16) intron (NM_001282116, intron 1 of 16) -9688 NM_002919 5991 Hs.136829 NM_002919 ENSG00000080298 RFX3 - regulatory factor X3 protein-coding 1.008 1.795 0.870 0.258 1.853 1.094 1.518 0.108 0.062 0.408 0.299 0.562 0.314 0.179 0.106 0.983 0.575 1.899 2.264 0.725 0.678 2.928 0.801 0.769 0.630 4.082 4.681 0.258 0.192 0.561 0.242 1.305 2.058 3.300 7.370 0.247 nan 1.247 0.838 0.084 0.270 0.876 1.089 1.518 0.562 0.130 0.046 1.261 0.048 876 chr18 47369834 47386357 + 0 NA TTS (NR_117096) TTS (NR_117096) 37702 NR_003003 677769 NR_003003 ENSG00000267322 SCARNA17 U91 small Cajal body-specific RNA 17 ncRNA nan 1.438 1.311 0.702 0.512 0.222 2.060 0.095 0.079 0.161 0.061 0.326 1.440 0.040 0.055 0.441 0.419 0.655 1.598 1.258 1.287 5.838 1.686 0.268 0.243 0.309 0.609 1.356 1.311 0.847 0.867 0.316 0.445 1.412 2.261 0.211 nan 2.629 2.189 1.925 0.255 0.306 0.179 2.060 0.326 0.597 0.258 0.144 0.112 1354 chr4 153268408 153304334 + 0 NA intron (NM_033632, intron 2 of 11) L2c|LINE|L2 -12261 NM_018315 55294 Hs.561245 NM_018315 ENSG00000109670 FBXW7 AGO|CDC4|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4 F-box and WD repeat domain containing 7 protein-coding nan 1.108 0.791 0.754 5.732 3.086 0.281 0.230 0.049 0.456 0.353 0.737 0.547 0.112 0.107 0.452 0.590 0.706 1.185 0.763 1.036 1.558 0.610 2.748 2.695 0.421 0.618 2.351 2.513 0.644 0.441 0.450 0.818 0.385 0.366 0.251 0.568 0.960 0.542 0.098 0.174 0.064 0.223 0.281 0.737 0.014 0.355 0.489 0.063 394 chr11 110580514 110585087 + 0 NA promoter-TSS (NM_001258415) promoter-TSS (NM_001258415) -27 NM_001258415 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 1.969 2.063 1.894 0.612 0.810 0.316 2.414 1.159 0.035 0.410 0.753 1.045 7.440 0.071 0.135 8.680 nan 1.932 2.096 4.549 4.019 2.054 0.605 9.838 9.804 2.828 nan 1.075 2.186 1.017 1.618 5.548 12.232 4.337 2.776 1.469 2.540 1.202 0.705 8.002 0.115 2.068 0.863 2.414 1.045 0.233 0.054 4.896 0.836 1625 chr8 23620057 23642924 + 0 NA Intergenic AluJb|SINE|Alu -67379 NM_001136271 137814 Hs.532654 NM_001136271 ENSG00000180053 NKX2-6 CSX2|CTHM|NKX2F|NKX4-2 NK2 homeobox 6 protein-coding nan 0.884 nan 0.046 0.172 0.098 0.280 0.056 0.085 0.068 0.075 0.047 0.085 0.067 0.106 0.357 0.246 0.166 0.248 nan 0.473 nan 0.098 0.053 0.056 0.099 0.159 0.266 0.258 4.257 3.932 0.163 0.166 0.098 0.147 1.287 4.642 nan nan 0.012 0.062 0.007 0.055 0.280 0.047 0.004 2.050 0.038 1.979 368 chr11 67230597 67237678 + 0 NA intron (NR_073412, intron 4 of 6) intron (NR_073412, intron 4 of 6) 2611 NR_073409 80194 Hs.288761 NM_025124 ENSG00000172663 TMEM134 - transmembrane protein 134 protein-coding nan 1.766 3.696 3.506 2.673 1.245 2.404 0.561 0.160 1.165 0.486 4.007 4.940 2.220 0.085 4.246 5.927 2.900 3.893 6.380 5.962 7.191 2.840 5.030 5.056 1.596 2.324 4.450 5.057 1.762 1.718 2.098 3.090 1.654 1.411 1.009 1.280 2.109 0.907 1.382 2.364 0.308 1.663 2.404 4.007 1.443 4.729 1.023 0.583 1311 chr3 181952917 181979259 + 0 NA Intergenic MIR3|SINE|MIR 238062 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 1.251 1.365 0.942 1.421 0.369 0.226 0.214 0.128 0.146 0.215 0.196 0.246 0.519 2.830 0.102 0.271 0.227 0.261 0.268 0.420 0.532 1.255 0.456 0.113 0.137 0.765 1.227 1.011 1.056 0.938 0.573 0.123 0.249 0.302 0.309 0.177 0.230 1.073 0.721 0.064 0.145 0.047 1.139 0.214 0.246 0.044 0.188 0.068 0.089 334 chr11 45906524 45923146 + 0 NA intron (NM_005456, intron 1 of 11) intron (NM_005456, intron 1 of 11) 7788 NM_005456 9479 Hs.234249 NM_005456 ENSG00000121653 MAPK8IP1 IB1|JIP-1|JIP1|PRKM8IP mitogen-activated protein kinase 8 interacting protein 1 protein-coding nan 2.599 0.891 1.570 1.698 0.801 3.274 0.139 0.005 1.594 0.772 2.835 2.921 0.668 0.083 2.158 3.601 0.593 0.839 4.760 4.938 3.458 1.713 0.436 0.432 2.100 2.755 1.160 1.767 1.675 1.990 1.043 1.713 2.092 1.427 1.301 nan 2.023 1.131 1.172 3.513 0.541 0.688 3.274 2.835 0.819 1.930 0.464 0.273 467 chr12 50443014 50451841 + 0 NA Intergenic Intergenic -3993 NM_020039 41 Hs.274361 NM_001095 ENSG00000110881 ASIC1 ACCN2|ASIC|BNaC2 acid sensing ion channel subunit 1 protein-coding nan 0.970 1.037 0.361 0.528 0.292 0.994 0.236 0.118 0.175 0.309 1.068 0.416 0.274 0.023 nan 1.228 0.607 0.964 2.554 nan 2.262 0.726 1.390 1.595 1.011 nan 0.680 nan 6.263 6.165 0.762 1.014 0.824 0.394 1.555 3.000 1.108 0.767 0.134 0.729 0.086 0.161 0.994 1.068 3.513 0.405 0.374 0.738 176 chr1 170652391 170673120 + 0 NA intron (NM_006902, intron 1 of 4) intron (NM_006902, intron 1 of 4) 29442 NM_006902 5396 Hs.283416 NM_006902 ENSG00000116132 PRRX1 AGOTC|PHOX1|PMX1|PRX-1|PRX1 paired related homeobox 1 protein-coding nan nan nan 0.149 0.142 0.101 0.284 4.315 0.348 0.076 0.101 0.040 0.291 0.047 0.094 0.304 0.194 0.449 0.586 nan 0.560 0.122 0.069 0.073 0.059 3.183 3.518 0.333 0.312 0.484 0.285 0.264 0.457 0.063 0.078 0.531 nan 0.194 0.396 0.048 0.308 0.014 0.023 0.284 0.040 0.009 0.049 0.081 0.244 36 chr1 14226471 14233030 + 0 NA Intergenic Intergenic 153874 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 0.683 0.971 nan 0.290 0.470 0.198 0.107 0.045 0.049 0.048 0.038 0.075 0.802 0.036 0.068 0.459 0.422 7.064 2.350 0.513 0.504 1.212 0.417 0.473 nan 0.163 nan 1.081 1.004 nan 0.173 0.459 0.744 0.054 0.154 0.201 0.228 0.666 0.497 0.874 0.122 0.014 0.060 0.107 0.075 0.030 0.200 0.347 0.019 180 chr1 175829808 175842624 + 0 NA Intergenic Intergenic -10263 NR_125964 101928751 NR_125964 ENSG00000224718 LINC01657 - long intergenic non-protein coding RNA 1657 ncRNA nan nan nan 0.055 0.227 0.176 0.268 0.111 0.042 0.106 0.143 0.075 0.355 0.051 0.053 5.438 6.500 7.775 7.004 nan 0.853 0.479 0.235 0.544 0.624 0.248 0.404 0.322 0.422 0.375 0.221 5.876 11.294 0.071 0.095 0.346 nan 0.713 0.672 0.025 0.194 0.045 0.099 0.268 0.075 0.112 0.063 7.302 0.124 837 chr17 79815488 79832689 + 0 NA Intergenic Intergenic 4762 NM_001301241 396 Hs.159161 NM_004309 ENSG00000141522 ARHGDIA GDIA1|HEL-S-47e|NPHS8|RHOGDI|RHOGDI-1 Rho GDP dissociation inhibitor alpha protein-coding 3.883 3.075 3.968 3.431 5.531 3.122 5.763 2.212 0.431 3.647 1.595 4.168 6.140 3.578 0.137 4.457 4.937 3.114 4.979 5.470 4.683 4.716 2.682 6.555 6.388 nan 4.245 4.492 7.056 5.762 6.564 2.674 5.041 3.866 4.295 3.927 4.578 nan 1.431 1.488 2.676 0.856 1.995 5.763 4.168 0.941 3.354 1.012 1.801 80 chr1 53994282 54014858 + 0 NA intron (NM_147193, intron 3 of 9) intron (NM_147193, intron 3 of 9) 79498 NM_033067 63948 Hs.131654 NM_033067 ENSG00000143006 DMRTB1 - DMRT like family B with proline rich C-terminal 1 protein-coding 1.469 0.700 0.996 0.094 0.248 0.116 0.553 0.715 0.155 0.121 0.109 0.087 0.472 0.084 0.092 0.497 0.660 0.424 0.836 0.793 0.759 0.726 0.289 0.469 0.488 3.030 3.454 0.275 0.482 1.727 2.337 0.408 0.413 0.276 0.336 0.710 nan 0.469 0.552 0.193 0.120 0.056 0.117 0.553 0.087 1.317 0.079 0.091 0.281 802 chr17 56060511 56086739 + 0 NA Intergenic AluSx3|SINE|Alu -8000 NM_001330393 7716 Hs.463569 NM_007146 ENSG00000136451 VEZF1 DB1|ZNF161 vascular endothelial zinc finger 1 protein-coding 3.611 3.408 3.941 3.689 4.851 2.558 2.235 2.303 0.235 2.480 1.156 3.835 7.037 2.134 0.142 4.254 4.443 3.093 4.303 6.128 5.953 4.599 2.293 nan 7.686 3.072 3.755 nan nan 6.402 5.864 2.448 4.717 4.696 5.698 5.057 6.301 2.335 1.149 1.438 2.756 1.578 2.273 2.235 3.835 1.123 1.770 1.731 2.587 689 chr16 11728430 11736352 + 0 NA Intergenic AluSg|SINE|Alu -29898 NM_003498 8303 Hs.618526 NM_003498 ENSG00000184602 SNN - stannin protein-coding 1.300 1.228 nan 1.719 0.675 0.223 0.322 1.252 0.285 0.416 0.212 2.013 1.313 0.096 0.060 1.038 1.059 0.508 0.828 1.113 0.912 9.437 3.013 0.885 0.976 0.904 1.614 3.264 3.517 nan 0.967 0.453 0.416 1.248 1.940 0.313 0.305 0.788 0.661 0.528 0.332 0.254 0.110 0.322 2.013 0.598 0.558 0.101 0.015 203 chr1 203473631 203495328 + 0 NA Intergenic Intergenic 21208 NM_014359 26254 Hs.632468 NM_014359 ENSG00000188770 OPTC OPT opticin protein-coding 2.020 2.469 1.809 0.273 1.077 0.467 7.256 0.689 0.147 0.980 0.485 0.764 1.344 0.115 0.093 1.257 2.021 0.739 1.140 1.476 1.836 3.666 1.106 nan nan 1.443 2.277 0.464 0.545 1.064 0.922 0.531 0.825 1.629 0.955 0.885 2.076 1.828 1.002 0.077 0.391 0.487 1.725 7.256 0.764 0.382 0.047 0.460 0.456 1454 chr6 7049745 7053829 + 0 NA Intergenic CpG -56043 NM_001168344 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 3.292 2.418 2.988 3.006 1.833 0.901 0.898 0.129 0.096 0.884 0.379 9.713 1.490 0.424 0.176 0.599 1.274 0.284 0.463 1.934 1.568 6.755 1.959 5.235 5.620 0.292 0.488 6.880 9.006 1.292 1.546 0.466 0.792 1.697 1.134 1.385 2.148 1.355 1.118 0.423 0.325 0.282 4.018 0.898 9.713 0.569 1.081 0.144 0.880 150 chr1 158968100 158983154 + 0 NA Intergenic Intergenic -4055 NM_005531 3428 Hs.380250 NM_005531 ENSG00000163565 IFI16 IFNGIP1|PYHIN2 interferon gamma inducible protein 16 protein-coding nan nan 0.837 0.047 0.559 0.319 0.077 3.458 0.267 0.322 0.256 0.032 0.326 0.029 0.115 0.347 0.157 2.256 5.805 0.281 nan 0.105 0.064 0.086 0.077 0.374 0.494 0.503 0.948 0.229 0.124 0.237 0.318 0.061 0.078 0.232 0.499 1.711 1.038 0.038 0.107 0.006 0.021 0.077 0.032 0.013 0.460 0.072 0.091 986 chr19 49893534 49914549 + 0 NA intron (NM_144688, intron 9 of 19) intron (NM_144688, intron 9 of 19) 12566 NM_144688 147872 Hs.662085 NM_144688 ENSG00000161609 CCDC155 KASH5 coiled-coil domain containing 155 protein-coding 1.734 1.219 3.513 0.663 0.848 0.489 1.083 0.077 0.138 0.269 0.112 0.193 0.785 0.182 0.118 0.326 0.287 0.326 0.378 1.848 1.802 3.045 0.645 0.735 0.797 0.462 0.756 2.405 2.424 3.128 2.670 0.375 0.424 1.508 1.231 1.177 2.889 3.123 1.629 3.284 2.281 0.408 0.312 1.083 0.193 0.841 0.655 0.084 0.686 1467 chr6 21173402 21209846 + 0 NA intron (NM_017774, intron 13 of 15) intron (NM_017774, intron 13 of 15) 320499 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 1.390 1.658 nan 1.478 2.249 1.226 3.110 0.341 0.110 0.806 0.745 1.974 nan 0.063 0.100 0.415 0.409 0.623 nan 1.567 1.978 nan 0.891 0.597 0.599 1.593 1.678 1.434 1.444 2.132 1.493 0.183 0.283 1.645 1.877 0.482 1.309 1.786 0.838 3.356 1.024 0.480 0.192 3.110 1.974 0.534 0.309 0.070 0.457 1512 chr6 113905496 113921819 + 0 NA Intergenic Arthur1C|DNA|hAT-Tip100 57620 NR_125844 101927686 Hs.402044 NR_125844 ENSG00000230943 LOC101927686 - uncharacterized LOC101927686 ncRNA nan 1.630 nan 1.340 4.291 2.571 1.613 0.899 0.236 0.157 0.110 1.175 1.424 0.259 0.127 0.480 0.437 0.449 1.285 2.907 nan nan 1.242 0.239 0.246 1.144 nan 0.693 0.586 0.532 0.322 0.191 0.417 0.789 0.662 0.309 nan 0.637 0.509 0.328 0.229 0.181 0.576 1.613 1.175 0.264 0.224 0.428 0.122 1192 chr21 16421810 16439125 + 0 NA intron (NM_003489, intron 1 of 3) MIR3|SINE|MIR 6659 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 RIP140 nuclear receptor interacting protein 1 protein-coding 2.896 1.106 nan 0.695 1.759 0.859 0.607 0.009 0.752 0.356 0.014 0.235 0.970 0.108 0.615 0.561 1.223 1.262 2.521 2.439 1.503 0.588 0.131 0.127 0.169 0.269 1.095 1.743 4.209 4.458 0.689 1.944 4.221 3.264 3.850 4.626 1.297 1.075 0.036 0.058 1.041 2.973 0.607 0.014 0.011 0.006 0.721 1.638 18 chr1 6660198 6676134 + 0 NA Intergenic Intergenic -5208 NM_014851 9903 Hs.7764 NM_014851 ENSG00000162413 KLHL21 - kelch like family member 21 protein-coding 2.683 nan 3.236 4.779 1.468 0.804 0.835 2.928 0.545 0.866 0.463 1.150 3.662 4.040 0.183 1.797 2.468 3.922 6.383 3.643 3.248 1.692 0.465 3.881 3.895 1.840 nan nan 5.444 nan 2.081 2.010 3.260 0.741 0.760 1.889 2.230 1.342 0.939 1.142 1.762 0.126 0.602 0.835 1.150 0.703 1.495 1.390 0.675 1768 chr9 135497130 135521439 + 0 NA intron (NR_136309, intron 14 of 18) L1MC4a|LINE|L1 29429 NM_001322343 64794 Hs.660767 NM_022779 ENSG00000125485 DDX31 PPP1R25 DEAD-box helicase 31 protein-coding nan 0.766 1.138 0.582 0.695 0.456 0.318 0.119 0.099 0.684 0.394 0.793 1.778 0.068 0.082 0.903 1.002 1.779 2.437 1.416 1.189 nan 0.125 0.475 0.480 2.028 1.836 0.486 0.644 2.055 1.468 0.915 1.537 1.789 2.497 0.557 0.934 3.104 1.603 0.160 0.058 0.553 0.075 0.318 0.793 0.463 0.644 0.615 0.244 867 chr18 42517272 42535796 + 0 NA intron (NM_015559, intron 3 of 5) intron (NM_015559, intron 3 of 5) 23597 NR_036203 100422829 NR_036203 ENSG00000265957 MIR4319 - microRNA 4319 ncRNA nan 1.317 0.741 1.877 0.705 0.302 3.208 0.135 0.097 0.864 0.545 2.119 2.087 0.036 0.085 0.467 0.399 0.316 0.682 3.519 3.414 3.074 1.420 0.051 0.050 0.478 0.711 0.816 1.377 0.368 0.277 0.159 0.215 2.976 2.372 0.260 nan 4.781 2.530 2.508 0.177 0.627 0.084 3.208 2.119 0.110 0.366 0.037 0.119 1035 chr2 47706178 47717437 + 0 NA Intergenic L1MB5|LINE|L1 -42869 NR_120602 644093 Hs.734158 NR_120602 ENSG00000235760 HCG2040054 - uncharacterized LOC644093 ncRNA 1.341 nan 1.079 0.116 0.393 0.116 0.110 0.120 0.085 0.131 0.190 0.096 0.691 0.183 0.164 0.330 0.385 0.359 0.417 nan 0.560 0.469 0.144 0.581 0.550 0.558 0.630 0.615 0.629 1.482 0.946 0.170 0.408 0.098 0.085 3.599 8.343 nan 0.333 0.109 0.134 0.017 0.092 0.110 0.096 0.042 0.018 0.053 3.112 92 chr1 61349841 61383755 + 0 NA Intergenic MER113B|DNA|hAT-Charlie 69650 NR_110618 100996570 Hs.46616 NR_110617 ENSG00000237928 NFIA-AS2 - NFIA antisense RNA 2 ncRNA 2.363 0.832 nan 0.220 0.475 0.281 0.729 0.337 0.115 0.139 0.122 0.318 1.140 0.023 0.099 0.509 0.385 0.275 0.355 0.782 0.821 0.135 0.069 0.308 0.352 nan nan 0.775 nan 2.611 2.913 0.188 0.260 0.710 0.472 0.436 1.124 1.186 0.896 0.244 0.139 0.160 0.240 0.729 0.318 1.353 0.162 0.032 0.208 381 chr11 77807337 77822888 + 0 NA intron (NM_024079, intron 11 of 12) intron (NM_024079, intron 11 of 12) -23847 NM_001203260 100532726 Hs.407860 NM_001203260 ENSG00000259112 NDUFC2-KCTD14 - NDUFC2-KCTD14 readthrough protein-coding nan 1.849 2.383 0.453 0.403 0.288 0.584 0.331 0.186 0.760 0.562 0.600 4.278 0.184 0.110 0.462 0.494 0.321 0.493 2.969 3.286 0.925 0.331 0.749 0.818 4.007 4.675 0.614 0.582 1.027 0.883 0.208 0.432 0.943 1.776 0.943 2.195 1.759 1.001 4.160 2.840 0.250 0.666 0.584 0.600 0.967 0.156 0.070 0.762 83 chr1 54134753 54154441 + 0 NA intron (NM_147193, intron 1 of 9) intron (NM_147193, intron 1 of 9) 55280 NM_147193 148979 Hs.306691 NM_147193 ENSG00000174332 GLIS1 - GLIS family zinc finger 1 protein-coding 1.215 0.542 0.879 0.148 0.409 0.173 0.294 0.260 0.090 0.079 0.111 0.117 0.379 0.110 0.109 0.352 0.461 0.315 0.619 0.787 0.847 0.716 0.276 0.329 0.422 3.841 4.488 0.423 0.596 1.852 2.758 0.272 0.327 0.126 0.137 0.531 nan 0.403 0.498 0.070 0.109 0.029 0.126 0.294 0.117 0.639 0.061 0.066 0.275 552 chr13 100601675 100655001 + 0 NA Intergenic Intergenic -4160 NM_033132 85416 Hs.508570 NM_033132 ENSG00000139800 ZIC5 - Zic family member 5 protein-coding 2.926 6.213 2.609 5.139 0.466 0.205 7.791 0.225 0.084 3.139 1.561 0.267 11.310 0.783 0.086 0.513 0.258 0.710 1.154 5.149 4.491 6.712 2.643 1.372 1.321 1.233 nan 1.666 2.842 1.283 1.893 0.155 0.192 10.758 9.165 0.156 nan 1.252 0.761 3.797 2.639 3.199 3.168 7.791 0.267 0.836 0.450 0.032 0.046 1060 chr2 122286607 122290556 + 0 NA TTS (NR_023343) TTS (NR_023343) 125 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 4.718 nan nan 4.198 3.440 1.815 2.519 2.785 0.863 1.396 0.860 3.788 8.531 4.330 0.214 6.625 7.281 6.575 8.493 4.678 4.745 8.942 7.484 15.965 17.234 4.091 5.040 7.281 11.416 6.358 5.818 5.023 6.034 2.652 2.965 7.226 6.571 1.512 1.084 3.002 1.080 0.314 2.203 2.519 3.788 0.760 1.907 1.641 1.158 190 chr1 184019360 184034444 + 0 NA intron (NM_001127394, intron 3 of 3) intron (NM_001127394, intron 3 of 3) 6117 NR_125335 116461 Hs.548197 NM_052965 ENSG00000198860 TSEN15 C1orf19|PCH2F|sen15 tRNA splicing endonuclease subunit 15 protein-coding nan nan 2.403 1.332 0.877 0.384 0.953 3.013 0.267 0.880 0.423 0.873 1.853 6.286 0.191 1.842 2.062 2.453 3.287 2.395 nan 1.332 0.464 nan 3.778 2.645 3.072 1.915 1.762 1.536 1.378 2.089 3.341 1.526 1.305 1.551 nan 1.066 0.675 0.772 0.842 0.341 0.611 0.953 0.873 0.303 0.444 0.676 0.695 1703 chr8 146244836 146256223 + 0 NA Intergenic HERVK-int|LTR|ERVK -22244 NR_023392 286101 Hs.367856 NR_023392 ZNF252P ZNF252 zinc finger protein 252, pseudogene pseudo 1.073 1.485 nan 1.094 2.863 1.239 0.369 0.118 0.099 1.129 0.414 2.563 1.138 0.079 0.112 0.259 0.284 0.323 0.610 nan 4.546 nan 0.386 0.671 0.631 0.218 0.441 0.550 0.722 0.641 0.496 0.575 0.526 0.375 0.452 0.361 0.566 3.246 1.352 0.195 1.174 0.050 0.133 0.369 2.563 0.060 0.375 0.111 0.205 610 chr14 81386928 81409539 + 0 NA intron (NM_152446, intron 1 of 23) Charlie3|DNA|hAT-Charlie 7651 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding nan 0.873 1.022 0.368 0.548 0.369 0.395 0.374 0.093 0.152 0.163 0.261 1.034 0.383 0.112 0.401 0.494 0.454 0.747 1.060 1.204 0.502 0.200 1.467 1.357 0.757 1.004 0.629 0.666 2.038 1.818 0.296 0.566 0.901 0.904 1.658 6.174 1.340 0.966 0.291 0.420 0.240 0.885 0.395 0.261 0.132 0.157 0.163 1.476 1050 chr2 105458347 105490167 + 0 NA 3' UTR (NM_006236, exon 1 of 1) 3' UTR (NM_006236, exon 1 of 1) 3731 NM_006236 5455 Hs.248158 NM_006236 ENSG00000198914 POU3F3 BRN1|OTF8|brain-1|oct-8 POU class 3 homeobox 3 protein-coding 0.407 nan 0.397 0.059 0.212 0.112 1.870 0.066 0.025 0.225 0.112 0.064 10.667 0.035 0.062 0.256 0.240 0.356 0.451 3.417 2.814 0.130 0.071 0.121 0.126 0.148 0.255 0.505 0.745 4.585 6.448 0.210 0.559 0.035 0.067 0.076 0.158 1.201 0.740 0.021 0.011 0.003 2.163 1.870 0.064 0.023 0.038 0.216 0.031 952 chr19 38825903 38828592 + 0 NA intron (NM_001330496, intron 1 of 27) CpG 804 NM_021185 57828 Hs.324335 NM_021185 ENSG00000099338 CATSPERG C19orf15 cation channel sperm associated auxiliary subunit gamma protein-coding 3.165 2.645 3.493 6.208 2.948 2.349 1.011 1.956 0.475 1.221 0.459 2.401 23.259 3.807 0.166 1.408 2.770 3.490 4.249 5.197 3.675 8.171 3.385 7.715 9.707 1.933 3.124 5.929 7.327 nan 2.728 1.769 2.571 2.757 2.053 1.701 3.655 2.849 1.147 2.862 5.322 0.486 1.413 1.011 2.401 0.540 2.504 1.377 0.730 434 chr12 6998911 7001697 + 0 NA Intergenic (CCCCG)n|Simple_repeat|Simple_repeat -1782 NR_135083 105369632 Hs.670096 NR_135083 ENSG00000111671 LOC105369632 - uncharacterized LOC105369632 ncRNA 3.470 nan nan 8.034 4.155 1.960 2.634 1.922 0.172 1.708 0.865 4.208 7.712 3.861 0.202 1.968 2.407 5.468 8.984 nan 5.983 14.835 6.705 8.856 10.157 6.585 6.719 7.038 8.886 2.877 1.799 2.600 3.480 4.573 6.528 5.411 7.209 2.535 1.350 4.494 4.617 0.683 4.889 2.634 4.208 6.604 2.401 2.187 1.913 1475 chr6 31780690 31786812 + 0 NA promoter-TSS (NM_005527) promoter-TSS (NM_005527) 460 NM_005345 3303 Hs.274402 NM_005345 ENSG00000204389 HSPA1A HEL-S-103|HSP70-1|HSP70-1A|HSP70.1|HSP70I|HSP72|HSPA1 heat shock protein family A (Hsp70) member 1A protein-coding nan 2.270 nan 3.298 4.289 1.990 7.204 2.712 0.893 0.742 0.847 3.808 11.897 4.588 0.190 3.540 4.405 0.560 nan nan 3.608 5.648 1.749 2.330 2.311 2.080 2.733 4.022 5.488 2.128 1.617 3.727 12.328 3.524 3.695 3.754 5.771 2.269 1.089 2.065 2.432 0.888 2.051 7.204 3.808 0.206 2.017 2.091 2.695 1599 chr7 105649199 105677574 + 0 NA intron (NM_152750, intron 14 of 18) intron (NM_152750, intron 14 of 18) 59729 NM_152750 222256 Hs.150120 NM_152750 ENSG00000128536 CDHR3 CDH28 cadherin related family member 3 protein-coding nan 0.699 1.209 0.090 0.364 0.224 0.860 1.247 0.119 0.299 0.224 0.303 0.641 0.065 0.163 0.576 0.645 0.307 0.358 0.492 0.549 0.683 0.198 0.164 0.149 3.632 4.356 0.262 0.313 0.506 0.395 0.370 0.679 0.420 0.550 0.533 nan 0.603 0.589 1.251 0.321 0.071 0.120 0.860 0.303 0.464 0.032 0.250 0.192 556 chr13 111350506 111370724 + 0 NA Intergenic Intergenic -2088 NM_024537 79587 Hs.508725 NM_024537 ENSG00000134905 CARS2 COXPD27|cysRS cysteinyl-tRNA synthetase 2, mitochondrial (putative) protein-coding 3.646 nan 3.042 6.291 3.821 2.085 3.902 1.219 0.265 1.110 0.629 3.918 7.526 2.228 0.108 6.561 6.928 3.454 5.096 6.338 5.441 7.100 3.537 3.676 3.614 0.739 1.036 5.121 7.052 3.686 4.238 2.555 4.604 6.019 5.839 4.204 3.964 0.972 0.521 5.496 5.308 1.593 3.986 3.902 3.918 0.601 2.206 1.696 1.010 335 chr11 45937731 45957264 + 0 NA intron (NM_152312, intron 6 of 13) intron (NM_152312, intron 6 of 13) 3270 NM_001300721 120071 Hs.86543 NM_152312 ENSG00000165905 LARGE2 GYLTL1B|PP5656 LARGE xylosyl- and glucuronyltransferase 2 protein-coding nan 2.000 1.631 2.417 1.446 0.648 0.964 0.325 0.082 1.569 1.028 1.859 2.897 0.631 0.096 3.599 4.019 1.604 2.235 4.455 3.875 5.135 1.403 2.055 2.040 0.992 1.294 1.624 1.924 1.366 1.216 1.632 2.527 1.179 1.154 1.257 nan 2.115 1.181 1.472 2.363 0.209 0.583 0.964 1.859 0.423 1.406 0.930 0.353 1723 chr9 14421654 14439791 + 0 NA Intergenic AluSz6|SINE|Alu -31740 NM_001190738 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding nan nan 1.052 0.295 0.387 0.228 1.113 0.535 0.044 0.730 0.594 0.566 2.234 0.070 0.074 0.249 0.304 2.949 6.184 0.826 0.925 1.237 0.382 0.128 0.166 31.837 36.362 0.384 0.401 0.483 0.215 0.290 0.600 0.697 0.663 0.638 2.768 2.443 1.517 1.121 0.108 0.090 0.048 1.113 0.566 0.082 0.335 0.109 0.705 7 chr1 2456386 2481270 + 0 NA Intergenic Intergenic -7144 NM_001010926 388585 Hs.57971 NM_001010926 ENSG00000197921 HES5 bHLHb38 hes family bHLH transcription factor 5 protein-coding 1.817 nan 1.756 1.704 0.988 0.575 0.617 0.467 0.169 0.619 0.248 0.525 4.393 1.046 0.087 1.565 2.717 0.782 1.060 2.208 1.745 1.645 0.495 1.276 1.348 0.854 nan nan 5.309 nan 1.011 0.854 1.043 1.172 1.017 1.046 1.626 0.575 0.419 5.634 1.737 0.277 1.718 0.617 0.525 0.687 0.699 0.598 0.412 580 chr14 29205825 29273466 + 0 NA TTS (NM_005249) TTS (NM_005249) -2265 NR_026731 387978 Hs.633254 NR_026731 ENSG00000186960 LINC01551 C14orf23|c14_5148 long intergenic non-protein coding RNA 1551 ncRNA 1.126 0.995 0.752 0.640 3.151 1.713 2.948 2.551 0.214 0.589 0.434 3.640 5.637 0.282 0.116 0.312 0.234 0.209 0.244 7.142 6.754 3.570 1.186 0.203 0.189 5.581 7.589 1.464 2.012 3.555 4.048 0.129 0.207 5.265 4.414 2.687 2.433 3.515 1.939 0.563 3.744 1.137 3.881 2.948 3.640 0.276 0.126 0.069 0.820 1561 chr7 21400358 21411626 + 0 NA Intergenic Intergenic -61660 NR_137166 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 0.920 1.317 1.161 1.999 1.333 0.725 0.092 0.109 0.128 0.975 0.495 0.870 2.629 0.204 0.121 0.633 0.400 0.882 nan 0.453 0.549 7.561 3.693 0.273 0.213 0.181 0.375 2.445 3.751 0.332 0.139 0.259 0.439 1.111 2.071 0.203 nan 1.627 0.922 0.149 0.125 0.085 0.028 0.092 0.870 0.017 0.907 0.068 0.033 1656 chr8 73774781 73809621 + 0 NA intron (NM_004770, intron 2 of 2) L1HS|LINE|L1 -128896 NM_017489 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 2.087 1.137 4.790 2.135 0.585 0.267 0.411 0.103 0.074 0.989 0.471 2.082 1.231 0.050 0.082 0.459 0.523 0.312 0.386 3.988 4.165 3.634 1.191 0.744 0.748 1.122 1.802 2.412 2.548 2.761 2.330 0.251 0.409 2.785 3.106 0.933 3.247 3.975 1.931 0.329 0.535 0.814 0.313 0.411 2.082 0.125 2.754 0.097 0.691 1542 chr7 1593364 1603046 + 0 NA Intergenic MIR3|SINE|MIR -2139 NM_001097620 202915 Hs.592174 NM_152689 ENSG00000164855 TMEM184A SDMG1 transmembrane protein 184A protein-coding 1.981 1.577 8.459 1.293 1.907 0.840 1.096 0.129 0.060 1.678 1.032 5.027 nan 0.421 0.102 1.647 2.556 0.249 nan 6.541 6.254 nan 1.492 2.266 2.568 0.305 0.638 nan 6.680 1.982 2.044 1.163 1.249 2.653 2.278 0.786 1.757 2.301 1.265 1.378 2.079 0.649 1.299 1.096 5.027 1.487 2.664 0.672 0.411 1421 chr5 133838598 133881385 + 0 NA promoter-TSS (NM_001308143) promoter-TSS (NM_001308143) -75 NM_001308143 23338 Hs.732155 NM_015288 ENSG00000043143 JADE2 JADE-2|PHF15 jade family PHD finger 2 protein-coding 1.620 1.211 nan 0.571 1.355 0.686 0.350 1.035 0.208 0.252 0.151 0.543 3.275 1.809 0.133 0.447 0.820 0.972 1.494 1.086 1.009 1.575 0.405 0.672 0.764 0.807 1.210 4.389 4.068 1.991 2.124 0.878 1.197 0.752 0.678 1.139 3.243 0.936 0.547 0.810 2.141 0.132 0.222 0.350 0.543 0.261 0.897 0.756 1.287 1293 chr3 147109597 147112812 + 0 NA promoter-TSS (NR_033118) promoter-TSS (NR_033118) -987 NR_033118 84107 Hs.415766 NM_032153 ENSG00000174963 ZIC4 - Zic family member 4 protein-coding 0.632 nan nan 0.054 0.327 0.052 0.279 2.979 0.300 1.315 0.614 0.204 0.160 2.865 0.116 0.417 0.199 5.585 7.902 0.086 0.173 nan 0.075 27.405 28.157 0.533 nan 13.601 20.889 nan 18.698 0.220 0.183 0.071 0.016 2.250 1.335 0.330 0.287 0.358 0.030 0.025 0.279 0.204 2.108 0.083 0.202 679 chr16 1819991 1824585 + 0 NA promoter-TSS (NM_002513) promoter-TSS (NM_002513) -578 NM_002513 4832 Hs.514065 NM_002513 ENSG00000103024 NME3 DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2 NME/NM23 nucleoside diphosphate kinase 3 protein-coding 3.359 nan 3.150 5.653 2.779 1.818 4.967 0.957 0.175 2.616 1.355 6.675 6.347 3.774 0.053 4.129 5.111 2.527 3.884 3.445 2.951 nan 2.927 6.873 7.037 2.339 nan 4.516 6.881 3.455 4.380 2.145 4.391 4.281 3.969 3.421 3.088 3.382 1.952 2.965 10.425 0.744 1.744 4.967 6.675 2.756 2.278 0.933 0.721 1717 chr9 14051507 14067509 + 0 NA Intergenic Intergenic 121293 NM_001282787 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding nan nan 0.934 0.248 0.532 0.323 0.400 0.136 0.080 0.177 0.152 1.100 1.592 0.034 0.068 0.249 0.085 0.391 0.732 1.546 1.864 0.463 0.294 0.104 0.090 5.571 6.993 0.730 1.256 0.476 0.336 0.208 0.312 0.248 0.233 0.190 0.428 1.148 0.866 7.513 0.239 0.149 0.084 0.400 1.100 0.043 0.082 0.104 0.061 1118 chr2 238599524 238644777 + 0 NA intron (NM_001137551, intron 2 of 11) intron (NM_001137551, intron 2 of 11) 21343 NM_004735 9208 Hs.471779 NM_004735 ENSG00000124831 LRRFIP1 FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP LRR binding FLII interacting protein 1 protein-coding 1.122 nan 2.394 2.201 1.240 0.588 1.126 0.503 0.130 1.164 0.557 1.684 1.533 0.271 0.106 0.987 1.326 0.563 1.070 0.852 0.790 2.347 0.838 0.679 0.639 0.850 1.143 3.032 nan 0.647 0.436 0.748 1.169 1.536 2.338 0.648 1.339 1.240 0.685 0.582 0.606 0.385 0.368 1.126 1.684 0.088 1.045 0.354 0.175 1206 chr21 40157733 40188042 + 0 NA Intergenic Intergenic -4344 NM_001256295 2114 Hs.644231 NM_005239 ENSG00000157557 ETS2 ETS2IT1 ETS proto-oncogene 2, transcription factor protein-coding nan 0.873 2.602 2.013 1.185 0.503 1.065 0.697 0.112 0.771 0.413 2.458 3.965 0.082 0.082 1.196 1.406 0.717 1.087 2.527 2.562 nan 0.788 0.315 0.349 0.596 nan 5.133 5.798 1.139 1.059 1.999 2.900 0.912 0.833 0.568 0.678 2.927 1.493 0.376 1.905 0.208 0.195 1.065 2.458 0.450 1.875 1.677 0.155 1698 chr8 145548947 145562876 + 0 NA 3' UTR (NM_031309, exon 2 of 2) 3' UTR (NM_031309, exon 2 of 2) 4032 NM_031309 83482 Hs.31746 NM_031309 ENSG00000261678 SCRT1 SCRT|ZNF898 scratch family transcriptional repressor 1 protein-coding 3.188 1.509 nan 2.491 2.111 1.251 1.784 0.362 0.116 0.394 0.191 2.558 7.498 0.870 0.047 1.757 3.001 0.876 1.281 nan 4.283 nan 0.893 1.351 1.262 1.268 1.883 1.062 1.930 2.778 2.851 1.568 3.079 1.309 1.070 1.915 2.622 0.832 0.490 2.972 3.283 0.240 0.763 1.784 2.558 0.871 2.203 1.132 0.831 314 chr11 16625963 16629985 + 0 NA Intergenic CpG -130039 NM_033326 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box 6 protein-coding 1.313 nan 4.679 7.588 6.559 3.631 0.821 0.260 0.350 0.106 2.822 13.114 0.707 0.043 nan 0.586 12.252 15.944 14.151 10.694 0.680 0.165 1.391 1.089 2.661 3.143 3.232 4.152 1.501 0.906 0.923 2.042 0.803 0.409 0.431 1.398 1.417 nan 4.214 0.423 0.118 0.100 0.821 2.822 2.014 0.146 1.291 835 chr17 79619754 79626824 + 0 NA intron (NM_002602, intron 1 of 3) intron (NM_002602, intron 1 of 3) 318 NR_026872 5148 Hs.654482 NM_002602 ENSG00000185527 PDE6G PDEG|RP57 phosphodiesterase 6G protein-coding 1.620 1.133 1.447 0.124 0.524 0.342 0.236 0.180 0.168 0.113 0.172 0.198 0.495 0.132 0.098 1.633 1.411 0.624 1.136 0.465 0.645 0.749 0.328 1.272 1.370 nan 0.515 0.276 0.526 1.833 1.646 0.949 0.916 0.171 0.281 2.851 7.619 nan 0.585 0.056 0.099 0.054 0.089 0.236 0.198 0.142 0.132 0.361 6.724 1304 chr3 181017577 181037033 + 0 NA intron (NR_075093, intron 2 of 4) intron (NR_075093, intron 2 of 4) 77780 NR_125730 103625684 NR_125730 ENSG00000207357 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 0.895 1.093 0.718 0.141 0.344 0.184 0.459 0.123 0.206 0.226 0.283 0.123 0.623 0.050 0.087 0.230 0.187 0.080 0.138 0.388 0.470 10.034 5.323 0.110 0.130 0.253 0.271 0.469 0.639 1.082 1.150 0.138 0.144 0.197 0.158 0.229 0.337 0.530 0.451 0.020 0.119 0.005 0.061 0.459 0.123 0.025 0.066 0.031 0.082 1251 chr3 21516959 21526769 + 0 NA intron (NM_024697, intron 4 of 7) AluSx1|SINE|Alu -62417 NR_046731 100874216 Hs.661720 NR_046731 ENSG00000225542 ZNF385D-AS1 - ZNF385D antisense RNA 1 ncRNA 0.524 0.715 0.573 0.027 0.113 0.033 0.025 0.361 0.066 0.048 0.065 0.161 0.074 0.227 0.119 5.612 4.950 0.144 0.111 0.101 0.049 0.184 0.176 0.640 0.805 0.254 0.171 nan 0.172 0.121 0.244 0.035 0.062 0.201 0.256 0.230 0.195 0.006 0.045 0.020 0.032 0.025 0.019 0.031 0.010 0.051 289 chr10 131748576 131763732 + 0 NA intron (NM_001005463, intron 5 of 15) intron (NM_001005463, intron 5 of 15) 5937 NM_001005463 253738 Hs.591374 NM_001005463 ENSG00000108001 EBF3 COE3|EBF-3|O/E-2|OE-2 early B-cell factor 3 protein-coding 2.425 0.510 2.009 0.041 7.822 3.771 1.800 0.069 0.011 0.103 0.049 2.185 3.429 0.062 0.063 1.104 0.962 0.103 0.080 0.593 0.521 0.089 0.040 0.496 0.428 1.294 2.067 0.108 0.148 0.384 0.408 0.163 0.228 1.001 0.713 0.610 0.454 1.014 0.554 0.632 0.053 0.169 2.756 1.800 2.185 0.903 0.007 0.014 0.123 1589 chr7 96624130 96662929 + 0 NA promoter-TSS (NR_015448) promoter-TSS (NR_015448) -152 NR_015448 285987 Hs.34969 NR_015448 DLX6-AS1 DLX6-AS|DLX6AS|Evf-2|NCRNA00212 DLX6 antisense RNA 1 ncRNA nan 2.602 nan 0.835 10.472 5.384 2.098 0.104 0.093 5.544 2.961 1.891 3.047 0.647 0.129 0.377 0.237 7.638 9.533 1.861 1.798 10.887 4.277 0.298 0.354 1.092 1.532 0.988 1.239 0.547 0.510 0.343 0.709 12.821 9.898 0.679 nan 5.932 3.462 0.918 0.703 3.639 2.582 2.098 1.891 0.168 0.543 0.161 0.385 310 chr11 12819156 12838323 + 0 NA intron (NM_021961, intron 3 of 12) intron (NM_021961, intron 3 of 12) 132770 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 1.223 nan 2.449 1.984 2.620 1.280 2.360 0.973 0.082 1.340 0.674 5.535 3.409 0.176 0.066 nan 1.164 1.653 4.050 3.318 3.466 3.540 1.740 0.921 0.863 1.218 nan 2.799 4.020 0.934 0.894 0.911 2.075 2.779 2.507 1.515 4.439 2.722 nan 3.496 2.883 0.764 0.972 2.360 5.535 0.217 0.244 1.814 1.249 1704 chr9 1047110 1062478 + 0 NA intron (NM_181872, intron 3 of 3) intron (NM_181872, intron 3 of 3) 4174 NM_181872 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 0.348 2.104 1.501 0.573 0.202 0.115 1.082 0.044 0.063 0.051 0.075 0.346 1.053 0.057 0.085 0.217 0.191 0.807 0.667 1.445 1.264 0.126 0.069 11.600 11.284 0.839 1.330 0.915 1.121 0.913 0.891 0.228 0.461 0.071 0.071 0.045 nan 0.581 0.658 0.011 0.458 0.018 0.016 1.082 0.346 0.042 0.041 0.155 0.024 927 chr19 13056421 13068825 + 0 NA intron (NM_001270363, intron 7 of 7) L2b|LINE|L2 5445 NM_052850 90480 Hs.515164 NM_052850 ENSG00000179271 GADD45GIP1 CKBBP2|CKbetaBP2|CRIF1|MRP-L59|PLINP|PLINP-1|PRG6|Plinp1 GADD45G interacting protein 1 protein-coding 4.148 1.955 7.228 2.173 2.757 1.320 1.748 1.134 0.339 1.428 0.921 2.587 1.693 1.768 0.103 2.473 2.647 2.554 3.684 3.955 4.329 5.599 2.339 5.605 5.332 2.649 4.000 3.646 4.832 6.835 6.131 1.412 2.319 2.704 3.717 4.509 6.205 3.465 1.512 3.740 1.076 1.012 0.788 1.748 2.587 1.417 1.591 0.607 2.898 1167 chr20 48803611 48812635 + 0 NA exon (NM_001285878, exon 1 of 1) exon (NM_001285878, exon 1 of 1) 483 NR_125739 101927559 Hs.442486 NR_125739 ENSG00000277449 CEBPB-AS1 - CEBPB antisense RNA 1 ncRNA nan nan 2.965 5.235 3.727 1.970 2.589 5.164 0.251 2.165 0.507 3.134 10.980 5.562 0.150 3.693 7.566 2.011 3.936 1.983 1.763 6.434 2.806 10.387 9.970 2.157 2.869 5.561 6.119 nan 4.810 8.119 8.884 1.506 1.974 2.767 5.465 1.525 1.031 2.470 5.496 0.287 3.366 2.589 3.134 0.949 2.355 2.083 0.985 376 chr11 73022688 73042339 + 0 NA intron (NM_014786, intron 1 of 20) MIRb|SINE|MIR 12850 NM_014786 9828 Hs.533719 NM_014786 ENSG00000110237 ARHGEF17 P164RHOGEF|RHOGEF17|TEM4|p164-RhoGEF Rho guanine nucleotide exchange factor 17 protein-coding nan 0.625 0.764 0.077 0.382 0.229 0.192 2.391 0.493 0.081 0.079 0.285 0.751 0.414 0.114 0.972 1.520 0.404 0.486 0.996 1.018 0.575 0.252 1.235 1.155 3.183 3.518 0.988 1.458 1.825 1.473 0.601 0.689 0.325 0.313 0.968 2.513 1.002 0.703 0.311 0.162 0.024 0.230 0.192 0.285 1.339 0.212 0.081 0.703 1017 chr2 16340937 16351780 + 0 NA Intergenic Intergenic 155809 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 (non-protein coding) ncRNA 0.641 0.340 0.664 0.518 0.112 0.084 0.062 0.047 0.196 0.057 0.162 0.044 0.447 0.061 0.113 0.495 0.411 0.380 0.208 0.226 0.219 0.337 0.105 0.403 0.578 0.178 0.253 0.193 nan 0.393 0.194 20.533 22.123 0.027 0.040 0.207 nan 0.128 0.252 0.052 0.147 0.017 0.050 0.062 0.044 0.027 0.028 15.331 0.012 1667 chr8 102497287 102527982 + 0 NA intron (NM_001330593, intron 1 of 15) intron (NM_001330593, intron 1 of 15) 7966 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|TFCP2L3 grainyhead like transcription factor 2 protein-coding 1.484 nan nan 2.120 0.792 0.390 0.262 0.349 0.089 0.404 0.250 3.290 5.443 0.025 0.074 2.156 2.485 3.518 5.704 2.826 2.448 nan 0.728 5.605 5.976 1.031 nan 7.897 nan nan 0.216 2.439 3.895 0.467 0.568 0.327 nan 1.186 0.806 2.120 0.145 0.075 0.761 0.262 3.290 0.038 0.515 1.278 0.225 1102 chr2 208193488 208205329 + 0 NA Intergenic Intergenic -65260 NR_031633 100302130 NR_031633 ENSG00000221628 MIR1302-4 MIRN1302-4|hsa-mir-1302-4 microRNA 1302-4 ncRNA 1.012 nan 1.216 0.551 3.412 1.590 1.144 0.990 0.122 0.144 0.097 0.314 4.855 0.294 0.074 0.466 0.315 0.352 0.533 0.249 0.278 0.390 0.136 0.637 0.709 2.179 2.308 0.537 0.508 0.492 0.286 0.181 0.273 3.852 5.836 0.455 1.012 0.355 0.203 1.152 0.701 0.816 0.086 1.144 0.314 0.254 0.902 0.092 0.157 989 chr19 49997928 50001763 + 0 NA intron (NM_001015, intron 1 of 4) intron (NM_001015, intron 1 of 4) 223 NM_001015 6205 Hs.433529 NM_001015 ENSG00000142534 RPS11 S11 ribosomal protein S11 protein-coding 5.869 3.360 5.490 4.398 9.887 4.984 3.958 2.136 0.696 2.248 1.216 5.111 7.508 5.347 0.270 5.909 5.192 6.279 9.320 9.804 10.282 13.450 8.665 23.443 25.912 5.815 7.703 10.926 15.061 11.868 12.120 4.323 7.016 6.142 8.484 6.913 9.693 5.370 2.531 3.925 4.114 1.072 2.357 3.958 5.111 1.903 2.824 2.058 3.949 160 chr1 161733846 161737101 + 0 NA promoter-TSS (NM_007348) promoter-TSS (NM_007348) -561 NM_007348 22926 Hs.492740 NM_007348 ENSG00000118217 ATF6 ACHM7|ATF6A activating transcription factor 6 protein-coding 5.738 4.163 4.546 4.353 3.243 1.226 1.214 5.387 0.348 3.079 1.668 3.173 6.825 6.143 0.341 4.548 6.243 9.153 12.338 4.910 nan 4.348 1.652 13.177 13.715 5.181 5.803 8.413 nan 7.328 6.467 18.086 12.219 5.669 8.756 6.108 8.892 3.991 2.297 0.956 6.236 0.873 2.690 1.214 3.173 1.010 3.534 6.697 1.936 1479 chr6 33171556 33177676 + 0 NA promoter-TSS (NR_029633) promoter-TSS (NR_029633) -996 NR_029633 407002 NR_029633 ENSG00000199036 MIR219A1 MIR219-1|MIRN219-1|MRI219-1|hsa-mir-219a-1|mir-219|mir-219a-1 microRNA 219a-1 ncRNA nan 2.635 nan 2.518 2.670 1.021 9.503 2.120 0.316 1.558 0.659 5.443 5.491 3.248 0.132 3.071 5.006 3.993 nan nan 4.186 4.122 1.539 6.904 7.650 2.542 3.411 4.573 6.208 4.456 4.640 1.519 2.970 3.328 3.107 2.443 4.147 2.759 1.270 2.070 2.437 0.671 2.807 9.503 5.443 1.302 2.840 1.303 1.394 32 chr1 9870707 9936068 + 0 NA Intergenic Intergenic -18803 NM_014944 22883 Hs.29665 NM_014944 ENSG00000171603 CLSTN1 ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2 calsyntenin 1 protein-coding 1.937 nan 1.683 2.184 0.683 0.324 0.777 0.253 0.187 0.461 0.230 0.521 3.757 0.271 0.115 0.835 1.200 0.521 0.791 1.533 1.532 0.498 0.161 0.621 0.629 2.401 nan nan 3.922 nan 2.106 0.403 0.562 0.460 0.424 1.726 3.882 1.607 0.876 2.189 0.447 0.125 0.190 0.777 0.521 0.715 0.451 0.134 0.901 717 chr16 79023704 79049238 + 0 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 598151 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 0.594 0.724 nan 2.716 4.580 2.399 0.568 0.044 0.031 0.589 0.256 2.791 1.405 0.017 0.064 0.309 0.216 0.390 1.511 0.897 0.907 3.659 1.342 0.339 0.294 0.074 0.147 3.284 4.287 0.793 0.616 0.112 0.181 0.002 0.002 0.191 0.308 3.896 1.748 1.710 1.768 0.007 0.183 0.568 2.791 0.373 0.056 0.027 0.053 1007 chr2 2847142 2856266 + 0 NA Intergenic (CA)n|Simple_repeat|Simple_repeat 278094 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 1.863 1.928 2.630 2.246 4.172 1.972 2.879 0.092 0.017 2.299 1.337 6.984 12.683 0.047 0.085 2.212 4.753 4.493 1.840 13.316 11.993 4.972 1.339 2.706 2.937 3.150 3.533 10.326 8.504 3.581 4.672 0.990 1.949 1.890 1.125 0.346 0.606 3.225 1.876 10.889 4.996 0.336 0.224 2.879 6.984 3.713 6.772 0.605 0.082 1382 chr5 38527974 38559302 + 0 NA intron (NM_002310, intron 1 of 19) MIR|SINE|MIR 13110 NM_001127671 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS leukemia inhibitory factor receptor alpha protein-coding 1.222 2.519 nan 6.526 2.923 1.400 1.232 0.424 0.212 0.927 0.477 2.641 7.539 0.464 0.126 0.532 0.476 0.440 0.623 2.725 2.924 0.188 0.094 1.351 1.311 0.286 0.510 6.053 7.476 3.378 2.923 0.226 0.418 0.157 0.161 0.273 0.474 3.846 1.909 2.639 3.450 0.044 0.448 1.232 2.641 0.625 1.763 0.066 0.082 1761 chr9 130299675 130348926 + 0 NA intron (NM_001035534, intron 1 of 13) intron (NM_001035534, intron 1 of 13) 7096 NM_022833 64855 Hs.522401 NM_022833 ENSG00000136830 FAM129B C9orf88|MEG-3|MINERVA|OC58|bA356B19.6 family with sequence similarity 129 member B protein-coding nan 2.301 3.512 3.700 2.414 1.080 0.737 0.878 0.242 1.072 0.495 3.601 4.687 0.291 0.073 0.557 0.727 0.750 1.587 5.326 5.857 nan 0.452 1.441 1.596 0.718 1.049 5.362 6.350 1.784 1.688 0.297 0.421 2.114 2.001 0.407 0.502 1.613 0.803 1.237 0.604 0.894 0.295 0.737 3.601 1.006 0.639 0.124 0.153 402 chr11 114090161 114116473 + 0 NA intron (NM_001018011, intron 4 of 6) (GGCTG)n|Simple_repeat|Simple_repeat -63218 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 0.947 0.839 0.716 0.207 0.301 0.128 0.289 0.045 0.049 0.149 0.135 0.141 0.300 0.021 0.108 0.733 nan 0.111 0.131 0.619 0.656 0.683 0.179 0.147 0.148 0.400 nan 0.429 0.471 1.040 1.062 0.575 0.844 0.758 0.694 1.071 3.568 0.867 0.669 0.042 0.139 0.221 0.161 0.289 0.141 0.059 0.073 0.200 0.697 75 chr1 44437964 44449561 + 0 NA 3' UTR (NM_004047, exon 8 of 8) 3' UTR (NM_004047, exon 8 of 8) -1112 NM_003780 8704 Hs.632403 NM_003780 ENSG00000117411 B4GALT2 B4Gal-T2|B4Gal-T3|beta4Gal-T2 beta-1,4-galactosyltransferase 2 protein-coding nan 2.227 nan 1.902 2.253 1.299 1.946 1.398 0.195 1.747 1.108 3.960 3.972 1.520 0.088 2.346 2.882 2.494 3.194 4.987 4.712 2.753 0.814 2.208 2.045 2.335 nan 11.394 14.233 2.654 2.921 3.118 nan 1.561 1.559 2.528 3.509 2.349 1.178 1.991 2.729 0.289 0.999 1.946 3.960 0.794 1.301 1.558 1.278 1097 chr2 205188208 205238506 + 0 NA Intergenic L1ME1|LINE|L1 -197159 NM_001302769 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 1.013 nan 1.105 0.130 0.287 0.108 0.219 0.162 0.084 0.119 0.109 0.299 0.370 0.017 0.069 0.506 0.304 0.657 0.587 0.339 0.394 0.393 0.108 13.152 13.439 0.415 0.725 0.709 0.580 0.876 0.762 0.175 0.258 0.363 0.282 0.457 0.827 0.474 0.356 0.106 0.066 0.110 0.248 0.219 0.299 0.187 0.036 0.043 0.212 146 chr1 156425113 156428530 + 0 NA Intergenic CpG -27481 NM_001320453 10485 Hs.380027 NM_006365 ENSG00000125462 C1orf61 CROC4 chromosome 1 open reading frame 61 protein-coding nan nan 7.230 4.653 4.993 2.488 4.280 3.392 0.851 3.699 1.927 3.329 27.757 4.486 0.215 6.109 6.270 5.963 8.721 8.525 nan 8.371 4.238 8.028 8.362 4.626 5.181 11.686 16.376 4.586 5.213 3.404 6.346 6.362 5.449 3.921 6.722 3.221 2.020 3.842 7.759 1.109 1.369 4.280 3.329 1.760 4.509 4.295 2.149 662 chr15 72765182 72768598 + 0 NA promoter-TSS (NR_135678) promoter-TSS (NR_135678) 223 NM_005744 25820 Hs.268787 NM_005744 ENSG00000166233 ARIH1 ARI|HARI|HHARI|UBCH7BP ariadne RBR E3 ubiquitin protein ligase 1 protein-coding 6.948 6.905 6.640 5.191 10.280 4.412 7.276 5.640 0.565 4.436 1.771 8.955 16.454 5.136 0.123 8.653 10.263 12.618 16.404 12.534 11.927 10.138 7.963 19.415 20.900 7.011 8.581 9.564 17.077 15.914 18.341 6.231 10.642 6.600 5.630 11.854 8.656 4.412 2.466 3.557 6.235 0.582 2.899 7.276 8.955 1.653 5.426 2.573 1.839 994 chr19 50594190 50643178 + 0 NA Intergenic AluSx|SINE|Alu 2413 NR_024224 100169953 Hs.723094 NR_024224 SNAR-A7 - small ILF3/NF90-associated RNA A7 snRNA 1.811 1.573 1.669 0.220 1.257 0.636 0.374 0.183 0.315 0.233 0.292 0.163 0.510 12.447 0.939 0.488 0.328 0.278 0.341 0.649 0.915 1.659 0.444 0.712 0.677 0.499 0.894 0.665 0.691 1.240 0.421 0.369 0.523 0.226 0.447 0.628 1.335 0.773 0.833 0.089 0.166 0.113 0.087 0.374 0.163 0.152 0.356 0.095 0.270 101 chr1 72095816 72110356 + 0 NA intron (NM_173808, intron 4 of 6) intron (NM_173808, intron 4 of 6) 199609 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA nan 0.758 1.229 0.261 0.282 0.155 0.168 0.138 0.099 1.502 0.748 2.064 0.289 0.019 0.126 0.351 0.236 0.178 0.270 1.568 nan 9.436 3.376 0.425 0.442 2.267 nan 0.710 0.680 0.377 0.219 0.152 0.211 0.815 0.376 0.372 0.768 1.394 0.888 0.065 0.375 0.178 0.323 0.168 2.064 0.087 0.112 0.041 0.187 369 chr11 67346564 67361748 + 0 NA TTS (NM_000852) TTS (NM_000852) 3090 NM_000852 2950 Hs.523836 NM_000852 ENSG00000084207 GSTP1 DFN7|FAEES3|GST3|GSTP|HEL-S-22|PI glutathione S-transferase pi 1 protein-coding nan 2.574 0.893 3.035 1.012 0.581 0.195 0.275 0.138 0.062 0.143 2.328 4.776 1.057 0.128 2.335 2.476 2.047 3.759 3.201 2.830 1.292 0.336 4.064 4.177 0.873 1.376 7.121 8.042 0.484 0.294 2.342 3.270 1.232 1.359 1.570 2.040 0.406 0.423 1.958 0.656 0.182 0.381 0.195 2.328 0.051 0.742 2.375 0.686 1758 chr9 128639084 128683624 + 0 NA intron (NR_024123, intron 2 of 6) intron (NR_024123, intron 2 of 6) 150876 NM_001134778 5090 Hs.428027 NM_006195 ENSG00000167081 PBX3 - PBX homeobox 3 protein-coding nan nan 1.003 1.430 1.421 0.702 0.388 0.371 0.102 1.049 0.766 0.693 nan 0.149 0.084 0.311 0.240 0.361 0.465 0.862 1.064 2.100 0.897 0.342 0.331 0.933 nan 1.692 2.354 2.581 1.862 0.164 0.230 2.362 3.012 1.241 2.101 nan 0.769 0.281 0.431 0.396 0.263 0.388 0.693 0.188 1.563 0.047 0.693 1567 chr7 27182054 27220711 + 0 NA TTS (NM_152739) TTS (NM_152739) 3767 NM_152739 3205 Hs.659350 NM_152739 ENSG00000078399 HOXA9 ABD-B|HOX1|HOX1.7|HOX1G homeobox A9 protein-coding 6.991 2.937 1.686 0.847 2.332 1.164 0.939 0.381 0.070 1.852 1.000 4.195 1.543 2.014 0.136 4.314 5.966 6.913 nan 8.846 7.145 2.758 0.970 1.987 2.093 3.738 5.164 7.045 8.371 2.570 2.763 3.792 8.735 3.422 2.936 0.351 nan 2.265 1.199 2.564 3.098 1.135 0.663 0.939 4.195 0.707 0.202 3.405 0.185 571 chr14 23788327 23793427 + 0 NA exon (NM_004643, exon 1 of 7) exon (NM_004643, exon 1 of 7) 1480 NM_004643 8106 Hs.707712 NM_004643 ENSG00000100836 PABPN1 OPMD|PAB2|PABII|PABP-2|PABP2 poly(A) binding protein nuclear 1 protein-coding 9.867 3.686 5.958 6.310 3.841 2.322 4.543 3.243 0.199 1.945 1.147 5.183 7.108 3.506 0.127 3.813 3.250 5.953 7.843 6.228 6.342 7.176 3.960 11.368 11.091 4.219 5.603 6.433 nan 12.179 10.775 3.304 6.213 6.018 7.156 17.793 16.113 2.807 1.311 4.141 3.602 0.921 2.330 4.543 5.183 1.953 3.434 1.181 8.191 545 chr13 79167507 79184078 + 0 NA exon (NM_006237, exon 2 of 2) exon (NM_006237, exon 2 of 2) 1903 NM_006237 5457 Hs.654522 NM_006237 ENSG00000152192 POU4F1 BRN3A|Oct-T1|RDC-1|brn-3A POU class 4 homeobox 1 protein-coding nan nan 0.680 0.726 0.618 0.443 1.152 0.111 0.059 0.292 0.156 1.040 1.366 0.052 0.068 3.090 4.335 0.370 0.454 1.899 1.588 0.929 0.283 0.328 0.371 0.703 0.975 0.477 0.544 1.063 1.177 0.698 1.221 0.281 0.214 0.157 0.459 0.885 0.493 0.396 0.858 0.017 2.400 1.152 1.040 0.093 0.690 0.256 0.065 1334 chr4 47074098 47093017 + 0 NA intron (NM_000812, intron 3 of 8) intron (NM_000812, intron 3 of 8) 50262 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 0.934 nan nan 0.112 0.180 0.094 0.087 0.075 0.047 0.239 0.190 0.070 0.153 0.023 0.092 0.438 0.346 0.171 0.249 0.137 0.179 0.132 0.093 0.236 0.239 1.382 1.529 0.179 0.208 2.310 2.749 0.125 0.227 0.035 0.083 1.971 5.595 0.385 0.383 0.015 0.047 0.010 0.084 0.087 0.070 0.257 0.054 0.031 1.959 1135 chr20 17548583 17551837 + 0 NA promoter-TSS (NM_006870) promoter-TSS (NM_006870) -345 NM_001278608 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 6.030 nan 8.485 7.608 3.681 2.591 5.161 10.175 0.546 2.622 1.240 6.685 13.275 2.997 0.073 9.091 12.239 8.911 13.193 8.921 6.424 10.452 3.603 8.390 8.268 2.811 4.183 10.541 13.234 4.164 5.251 2.406 8.022 7.539 5.377 2.912 3.818 2.242 1.554 4.642 3.724 2.029 1.625 5.161 6.685 5.003 6.335 3.252 0.634 985 chr19 49651407 49662125 + 0 NA exon (NM_002152, exon 1 of 6) exon (NM_002152, exon 1 of 6) 1915 NM_002152 3270 Hs.436885 NM_002152 ENSG00000130528 HRC - histidine rich calcium binding protein protein-coding 2.783 1.964 3.395 0.960 1.854 0.991 0.632 0.378 0.120 0.612 0.292 1.271 4.560 1.932 0.102 1.380 2.246 1.236 2.047 2.440 2.400 1.677 0.750 3.960 4.019 1.234 1.852 1.595 2.070 3.832 4.080 1.242 1.998 1.026 0.992 2.867 3.255 1.434 0.999 1.466 5.052 0.233 0.282 0.632 1.271 0.930 0.870 1.315 1.092 1683 chr8 128759870 128889319 + 0 NA intron (NR_003367, intron 1 of 8) AluJo|SINE|Alu 16386 NR_031609 100302185 NR_031609 ENSG00000249859 MIR1204 hsa-mir-1204 microRNA 1204 ncRNA nan nan nan 0.303 0.552 0.258 0.089 0.889 0.210 0.160 0.140 0.077 nan 0.623 0.106 6.406 7.221 0.856 1.577 0.526 0.513 0.920 0.355 nan nan 9.722 12.222 2.392 2.592 35.252 25.940 0.416 0.780 0.207 0.292 5.322 8.949 0.276 0.371 0.290 0.073 0.062 0.082 0.089 0.077 3.171 0.517 0.318 3.909 1444 chr6 291205 337490 + 0 NA intron (NR_104473, intron 3 of 5) intron (NR_104473, intron 3 of 5) 22290 NR_104473 56940 Hs.29106 NM_020185 ENSG00000112679 DUSP22 JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX dual specificity phosphatase 22 protein-coding 1.349 1.018 1.428 1.844 1.318 0.621 0.463 0.315 0.150 1.564 0.805 2.532 1.554 0.576 0.106 1.155 1.399 0.747 1.186 1.082 1.112 3.253 1.182 1.443 1.439 0.445 0.817 1.358 1.709 0.834 0.553 0.477 0.691 1.244 0.902 0.428 0.526 2.188 1.333 1.313 3.079 0.216 0.186 0.463 2.532 0.130 0.386 0.169 0.153 860 chr18 42001441 42007384 + 0 NA intron (NR_110792, intron 2 of 4) intron (NR_110792, intron 2 of 4) 107250 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA nan 1.004 0.714 0.759 2.700 1.185 0.437 0.098 0.816 0.311 0.262 1.867 0.037 0.063 0.253 0.262 0.203 0.386 1.416 1.918 0.247 0.211 0.049 0.058 0.135 0.220 1.625 2.185 0.339 0.149 0.094 0.043 1.732 0.514 0.106 nan 5.991 2.998 0.160 0.015 0.386 0.015 0.437 0.262 0.068 0.033 0.085 1435 chr5 150283399 150285608 + 0 NA promoter-TSS (NM_001172831) promoter-TSS (NM_001172831) 42 NM_001172832 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 1.157 nan 1.037 3.743 3.549 1.888 2.069 0.144 0.846 0.190 3.520 0.555 5.353 0.104 1.158 1.142 0.141 0.115 5.765 6.520 12.280 8.083 12.612 13.588 4.833 6.234 15.607 24.283 12.051 11.884 3.232 4.409 5.361 5.951 6.267 4.574 5.152 3.353 2.913 1.720 0.254 0.473 3.520 1.928 0.448 1.728 681 chr16 3027122 3040346 + 0 NA Intergenic Intergenic -3194 NM_001258451 9088 Hs.732385 NM_004203 ENSG00000127564 PKMYT1 MYT1|PPP1R126 protein kinase, membrane associated tyrosine/threonine 1 protein-coding 2.543 nan 3.927 1.886 1.434 0.821 1.160 0.424 0.222 0.766 0.421 0.906 4.906 1.092 0.099 1.854 2.179 0.927 1.131 2.026 2.030 nan 1.281 2.501 2.562 1.474 nan 1.449 2.118 3.942 3.957 0.749 1.082 3.699 4.143 1.961 4.605 1.855 0.927 2.363 2.437 1.293 0.496 1.160 0.906 1.255 0.845 0.207 1.886 1623 chr7 156791723 156816644 + 0 NA promoter-TSS (NM_005515) promoter-TSS (NM_005515) 632 NR_038835 645249 Hs.224879 NR_038835 ENSG00000243479 MNX1-AS1 CCAT5 MNX1 antisense RNA 1 (head to head) ncRNA 0.777 0.878 nan 1.981 4.601 2.431 1.084 0.070 0.158 1.147 0.510 2.023 1.220 0.900 0.130 3.515 5.092 1.112 1.415 2.293 2.148 2.155 0.714 0.110 0.111 0.361 0.730 3.688 4.325 1.171 1.506 4.342 6.051 0.967 0.869 0.127 0.208 1.624 1.011 1.626 1.555 0.160 0.697 1.084 2.023 0.259 0.485 2.700 0.049 247 chr10 1450650 1530046 + 0 NA intron (NM_018702, intron 1 of 9) intron (NM_018702, intron 1 of 9) -78477 NR_033387 642394 Hs.568831 NM_001098830 ENSG00000205696 ADARB2-AS1 C10orf109|NCRNA00168|bA466B20.1 ADARB2 antisense RNA 1 ncRNA 0.483 0.444 0.725 0.539 4.121 2.138 0.492 0.138 0.105 1.249 0.574 5.488 0.537 0.031 0.076 0.803 1.330 0.117 0.150 1.999 2.122 0.267 0.134 0.739 0.773 0.105 0.191 3.573 3.818 0.166 0.082 0.933 1.852 0.029 0.045 0.084 0.110 0.044 0.053 0.813 4.051 0.007 0.050 0.492 5.488 0.192 0.184 2.278 0.017 197 chr1 203005425 203024700 + 0 NA exon (NM_001304332, exon 8 of 29) exon (NM_001304332, exon 8 of 29) 19413 NM_001304332 8497 Hs.153648 NM_015053 ENSG00000143847 PPFIA4 - PTPRF interacting protein alpha 4 protein-coding 1.367 0.921 1.264 0.133 0.464 0.249 0.475 0.153 0.144 0.237 0.146 0.422 0.827 0.090 0.085 0.646 0.596 0.449 0.720 3.301 3.554 1.148 0.311 nan nan 0.627 1.233 1.383 1.603 0.619 0.356 0.241 0.261 0.289 0.265 0.797 1.402 1.335 0.831 0.575 0.318 0.040 0.201 0.475 0.422 0.227 0.727 0.026 0.346 408 chr11 125233719 125253401 + 0 NA intron (NM_022062, intron 5 of 12) intron (NM_022062, intron 5 of 12) -121550 NM_001301851 403312 Hs.450611 NM_203452 LOC403312 - putative uncharacterized protein MGC39545 protein-coding 1.043 1.177 0.760 0.076 0.147 0.130 1.689 0.052 0.008 0.032 0.129 0.036 0.315 0.072 0.097 0.844 1.334 0.329 0.339 0.332 0.323 0.115 0.089 0.460 0.482 0.204 0.355 0.118 0.151 1.207 1.141 0.729 1.096 0.400 0.325 2.098 5.404 0.359 0.290 0.203 0.036 0.116 0.291 1.689 0.036 0.169 0.015 0.251 1.833 1632 chr8 37698115 37708374 + 0 NA intron (NM_018310, intron 3 of 3) FRAM|SINE|Alu 4187 NM_018310 55290 Hs.709301 NM_018310 ENSG00000104221 BRF2 BRFU|TFIIIB50 BRF2, RNA polymerase III transcription initiation factor subunit protein-coding 1.707 2.406 nan 7.353 1.582 0.864 1.746 1.041 0.202 1.168 0.728 3.722 2.847 1.171 0.095 2.326 2.967 2.345 3.721 4.413 4.762 3.381 1.106 3.795 3.888 0.919 1.257 2.414 3.477 1.767 1.671 1.327 2.314 1.885 1.726 1.482 1.561 2.071 1.136 1.308 1.687 0.268 0.372 1.746 3.722 0.282 1.100 0.907 0.607 1380 chr5 34179124 34194846 + 0 NA Intergenic Intergenic -62352 NR_037951 100534612 Hs.171929 NR_037951 ENSG00000273294 C1QTNF3-AMACR - C1QTNF3-AMACR readthrough (NMD candidate) ncRNA 3.939 5.105 8.971 1.651 1.231 0.688 0.510 1.655 0.913 1.588 1.167 1.385 2.061 0.495 0.508 2.157 1.884 1.794 1.881 2.139 2.585 2.273 0.922 1.751 1.796 3.501 4.909 2.603 3.177 2.963 2.133 1.762 2.404 1.324 1.739 0.859 1.966 4.316 3.041 0.279 0.604 0.626 0.999 0.510 1.385 0.563 0.741 0.352 0.438 1315 chr3 189177787 189187981 + 0 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -131651 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 1.217 1.180 0.774 0.155 6.218 3.241 0.327 0.262 0.121 0.183 0.146 0.165 0.358 0.052 0.080 0.293 0.112 0.255 0.435 0.280 0.398 1.759 0.730 0.345 0.329 0.353 0.472 0.406 0.433 0.809 0.434 0.102 0.214 0.182 0.196 0.431 0.568 0.602 0.436 0.033 0.094 0.046 0.139 0.327 0.165 0.028 0.040 0.049 0.073 1111 chr2 219856700 219869457 + 0 NA Intergenic L2b|LINE|L2 3352 NR_029867 494324 NR_029867 ENSG00000198973 MIR375 MIRN375|hsa-mir-375|miRNA375|mir-375 microRNA 375 ncRNA nan 2.648 nan 6.060 7.467 3.644 1.346 0.065 0.064 3.870 1.903 12.303 7.874 0.545 0.061 4.812 9.428 0.301 0.514 11.665 11.008 4.360 1.559 0.349 0.302 0.886 1.205 14.757 nan 3.961 4.135 2.304 4.864 1.937 1.270 1.461 6.595 2.463 1.161 5.708 4.406 0.575 0.675 1.346 12.303 1.795 4.995 4.506 1.286 1044 chr2 70309708 70323281 + 0 NA TTS (NM_006196) TTS (NM_006196) 1909 NM_006196 5093 Hs.2853 NM_006196 ENSG00000169564 PCBP1 HEL-S-85|HNRPE1|HNRPX|hnRNP-E1|hnRNP-X poly(rC) binding protein 1 protein-coding nan nan 5.746 7.506 10.045 6.002 6.203 1.921 0.213 3.633 1.576 7.268 9.262 3.443 0.194 8.457 6.869 6.836 9.393 11.539 12.850 8.657 7.810 12.374 13.365 5.545 6.337 10.557 13.342 7.654 6.809 7.088 9.233 4.593 5.363 8.705 7.048 nan 1.232 6.305 6.585 1.085 2.767 6.203 7.268 2.047 3.353 3.647 2.889 407 chr11 120104111 120188472 + 0 NA intron (NM_014352, intron 3 of 12) intron (NM_014352, intron 3 of 12) -9650 NR_038829 649133 Hs.568902 NR_038829 ENSG00000259541 LOC649133 - uncharacterized LOC649133 ncRNA 0.495 0.670 0.477 0.076 0.266 0.138 0.380 0.037 0.046 0.076 0.131 0.088 1.070 0.062 0.095 3.779 5.130 4.918 4.114 0.355 0.455 0.294 0.150 5.204 5.202 0.194 0.423 0.200 0.209 0.393 0.241 4.032 7.728 0.115 0.134 0.159 nan 0.584 0.570 0.095 0.113 0.026 0.039 0.380 0.088 0.043 0.031 5.561 0.058 568 chr14 23444409 23455945 + 0 NA intron (NM_001289097, intron 1 of 1) CpG 1674 NM_032876 84962 Hs.655832 NM_032876 ENSG00000129474 AJUBA JUB ajuba LIM protein protein-coding nan 0.693 1.276 0.448 0.530 0.348 0.503 2.668 0.507 0.081 0.109 0.384 1.692 6.805 0.188 2.068 2.668 7.803 7.758 0.634 0.776 1.157 0.262 0.518 0.590 1.927 1.997 0.787 nan 0.932 0.598 1.013 1.624 0.329 0.488 0.463 1.432 0.868 0.558 2.258 0.169 0.065 0.130 0.503 0.384 0.673 0.598 0.825 0.204 282 chr10 115825407 115835862 + 0 NA Intergenic Intergenic 26828 NM_000684 153 Hs.99913 NM_000684 ENSG00000043591 ADRB1 ADRB1R|B1AR|BETA1AR|RHR adrenoceptor beta 1 protein-coding 0.485 nan 0.557 0.068 0.432 0.284 0.086 0.476 0.199 0.230 0.117 0.080 0.290 0.002 0.088 0.623 0.469 7.788 2.719 0.115 0.089 0.912 0.232 0.224 0.227 0.199 0.318 0.520 0.533 0.167 0.112 0.174 0.257 0.109 0.086 0.131 0.116 0.608 0.415 0.043 0.233 0.028 0.058 0.086 0.080 0.231 0.114 0.082 534 chr13 52351926 52397369 + 0 NA intron (NM_001031719, intron 1 of 7) intron (NM_001031719, intron 1 of 7) 3651 NM_024705 79758 Hs.266728 NM_024705 ENSG00000102796 DHRS12 SDR40C1 dehydrogenase/reductase 12 protein-coding 1.579 nan nan 0.402 0.550 0.265 0.637 0.384 0.075 0.257 0.145 1.644 1.742 0.257 0.071 1.415 1.845 0.397 0.681 2.404 2.328 nan 0.611 0.867 0.912 0.767 1.036 1.083 1.509 2.454 2.683 0.755 1.099 0.869 0.849 2.047 nan 0.479 0.291 0.881 1.999 0.174 0.664 0.637 1.644 1.198 0.245 0.310 1.188 600 chr14 64853403 64856890 + 0 NA exon (NM_005956, exon 1 of 28) exon (NM_005956, exon 1 of 28) 387 NM_005956 4522 Hs.652308 NM_005956 ENSG00000100714 MTHFD1 MTHFC|MTHFD methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 protein-coding 12.625 nan 6.224 7.800 4.659 2.320 6.717 5.702 0.985 1.566 1.254 6.254 10.472 5.151 0.183 6.959 6.149 7.996 9.991 12.304 10.515 9.038 4.396 19.641 20.839 6.090 8.395 9.913 17.579 16.610 19.427 6.864 7.811 11.240 13.153 9.311 7.989 7.639 3.876 5.522 4.684 1.958 4.008 6.717 6.254 1.787 3.090 1.527 2.576 1529 chr6 157253311 157265935 + 0 NA intron (NM_020732, intron 5 of 19) intron (NM_020732, intron 5 of 19) -158758 NR_039676 100616154 NR_039676 ENSG00000271899 MIR4466 mir-4466 microRNA 4466 ncRNA nan 1.013 1.533 0.982 0.771 0.508 0.461 0.163 0.114 0.544 0.456 1.040 2.779 0.098 0.105 1.958 2.699 0.918 2.086 1.545 nan 6.135 2.483 0.499 0.656 0.584 0.671 1.528 1.497 1.109 0.956 0.544 1.167 1.469 1.818 0.431 nan 0.746 0.440 1.180 0.590 0.308 0.554 0.461 1.040 0.072 0.066 0.704 0.246 1072 chr2 160567431 160570521 + 0 NA promoter-TSS (NR_110586) promoter-TSS (NR_110586) 8 NM_001282805 64844 Hs.529272 NM_022826 ENSG00000136536 MARCH7 AXO|AXOT|MARCH-VII|RNF177 membrane associated ring-CH-type finger 7 protein-coding 7.716 4.889 7.405 6.563 10.008 4.824 5.658 4.311 0.258 2.827 2.098 7.820 11.925 5.063 0.171 6.061 6.691 13.095 18.197 10.971 10.313 7.115 3.397 20.826 22.004 6.740 8.674 8.529 14.117 8.817 9.497 4.583 10.223 5.042 5.476 12.047 10.661 3.397 1.980 6.960 4.734 1.104 3.171 5.658 7.820 1.691 1.689 3.163 2.973 1393 chr5 56777384 56802032 + 0 NA Intergenic Intergenic -11072 NM_001017992 345651 Hs.482167 NM_001017992 ENSG00000169067 ACTBL2 ACT actin, beta like 2 protein-coding nan nan 0.700 0.036 0.467 0.292 0.254 0.850 0.058 0.108 0.093 0.015 1.481 1.002 0.135 0.191 0.192 2.558 7.048 0.148 0.178 nan 0.077 0.152 0.136 1.144 1.343 0.258 0.220 nan 0.218 0.077 0.083 0.122 0.168 0.256 0.551 0.534 0.461 0.533 0.091 0.031 0.087 0.254 0.015 0.067 0.041 0.020 0.095 78 chr1 53942473 53954579 + 0 NA Intergenic Intergenic 23454 NM_033067 63948 Hs.131654 NM_033067 ENSG00000143006 DMRTB1 - DMRT like family B with proline rich C-terminal 1 protein-coding 1.048 0.578 1.095 0.072 0.263 0.107 0.220 0.234 0.084 0.051 0.082 0.060 0.456 0.105 0.076 0.543 0.773 0.251 0.362 0.729 0.768 0.698 0.322 0.340 0.315 3.555 3.594 0.724 0.834 0.996 1.189 0.337 0.480 0.180 0.150 0.380 nan 0.398 0.494 0.133 0.059 0.023 0.080 0.220 0.060 0.611 0.300 0.164 0.093 223 chr1 228269155 228272209 + 0 NA promoter-TSS (NM_001024228) promoter-TSS (NM_001024228) -169 NM_001024228 375 Hs.286221 NM_001658 ENSG00000143761 ARF1 - ADP ribosylation factor 1 protein-coding 9.079 7.140 10.770 8.423 10.572 5.587 8.500 5.355 0.786 7.239 2.262 7.459 11.731 5.266 0.146 8.000 7.962 14.761 21.572 13.159 12.060 10.631 6.026 26.119 27.140 5.003 6.358 7.742 14.170 9.336 11.143 3.506 7.505 7.826 10.820 12.774 9.966 3.606 2.290 4.742 5.864 1.245 5.317 8.500 7.459 1.301 3.865 1.246 3.250 1411 chr5 88075136 88084518 + 0 NA intron (NM_001193347, intron 4 of 11) intron (NM_001193347, intron 4 of 11) 39917 NM_001193348 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 0.687 1.435 0.595 0.169 0.203 0.240 0.327 1.550 0.051 0.200 0.178 0.102 1.040 0.569 0.115 0.530 0.635 7.076 10.710 0.459 0.339 0.531 0.256 0.266 0.334 1.912 2.059 0.414 0.436 0.310 0.148 1.016 2.092 0.126 0.267 0.243 nan 0.416 0.308 0.077 0.370 0.010 0.009 0.327 0.102 0.031 0.076 2.322 0.130 34 chr1 11066855 11077456 + 0 NA promoter-TSS (NM_007375) promoter-TSS (NM_007375) -524 NM_007375 23435 Hs.300624 NM_007375 ENSG00000120948 TARDBP ALS10|TDP-43 TAR DNA binding protein protein-coding 2.459 1.713 nan 8.716 2.084 1.302 1.801 1.333 0.274 0.521 0.393 1.264 3.967 1.507 0.145 2.833 2.511 3.380 4.632 5.069 6.054 2.142 2.160 7.150 nan 1.948 nan 9.452 11.480 nan 3.357 2.602 2.778 1.293 1.860 4.044 2.766 2.046 0.927 1.824 1.160 0.251 0.360 1.801 1.264 0.531 0.872 0.344 0.771 845 chr18 3441763 3467179 + 0 NA intron (NM_173211, intron 1 of 2) intron (NM_173211, intron 1 of 2) 699 NM_173211 7050 Hs.373550 NM_003244 ENSG00000177426 TGIF1 HPE4|TGIF TGFB induced factor homeobox 1 protein-coding 2.814 3.127 3.594 1.384 0.877 0.492 0.481 2.424 0.253 0.913 0.534 2.719 nan 7.241 0.249 0.861 1.181 4.163 7.484 5.326 4.332 nan 0.190 3.049 3.039 0.928 nan 4.064 5.636 nan 0.884 0.902 2.178 4.263 4.886 1.689 nan nan 1.473 3.700 2.031 0.810 1.713 0.481 2.719 0.436 1.225 1.133 1.245 224 chr1 228718087 228785540 + 0 NA TTS (NR_106988).5 TTS (NR_106988).5 1004 NR_106988 102465753 NR_106988 ENSG00000280494 MIR7641-2 B-ATF|hsa-mir-7641-2 microRNA 7641-2 ncRNA 2.773 nan 7.295 3.712 6.460 3.530 3.793 0.414 0.351 0.861 0.660 0.630 5.185 6.700 0.406 1.455 1.511 1.472 3.426 2.242 nan 2.528 0.645 3.203 3.075 3.282 4.717 1.036 1.146 3.359 3.048 1.363 1.900 0.814 0.886 1.159 2.773 1.238 0.769 0.686 0.689 0.343 0.378 3.793 0.630 0.760 1.234 0.488 1.615 1014 chr2 16197038 16214832 + 0 NA intron (NR_126559, intron 1 of 3) AluSx3|SINE|Alu 15386 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 (non-protein coding) ncRNA 0.770 0.410 2.843 0.393 0.217 0.095 0.123 0.047 0.036 0.062 0.116 0.040 0.371 0.059 0.116 0.318 0.308 0.229 0.399 0.284 0.290 1.231 0.394 0.223 0.143 0.142 0.239 0.539 nan 0.500 0.302 6.739 9.501 0.060 0.042 0.691 nan 0.151 0.212 0.985 1.311 0.037 0.018 0.123 0.040 0.223 2.572 0.190 321 chr11 31775459 31792952 + 0 NA intron (NM_001288726, intron 10 of 11) intron (NM_001288726, intron 10 of 11) 41580 NM_001310161 5080 Hs.270303 NM_000280 ENSG00000007372 PAX6 AN|AN2|D11S812E|FVH1|MGDA|WAGR paired box 6 protein-coding 0.878 0.953 nan 0.101 0.248 0.110 0.388 0.138 0.074 0.161 0.123 0.062 0.300 0.068 0.121 0.490 0.387 0.202 0.243 0.261 0.388 0.294 0.183 0.290 0.263 5.942 6.420 0.140 0.182 0.509 0.220 0.200 0.357 0.299 0.258 0.290 nan 1.022 0.667 0.120 0.112 0.055 0.158 0.388 0.062 0.079 0.035 0.051 0.114 1534 chr6 162895028 162907179 + 0 NA intron (NM_013987, intron 1 of 10) AluSc|SINE|Alu -247061 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PARK2CRG PARK2 coregulated protein-coding 0.601 nan 0.656 0.152 0.190 0.083 0.201 0.061 0.066 0.065 0.040 0.086 0.204 0.026 0.084 0.483 0.448 0.179 0.301 0.296 0.367 6.444 2.069 0.111 0.091 0.153 0.208 0.365 0.365 nan 0.480 0.124 0.288 0.220 0.398 0.344 0.683 0.426 0.353 0.014 0.043 0.008 0.046 0.201 0.086 0.016 0.050 0.074 0.035 680 chr16 2279321 2286869 + 0 NA exon (NM_004424, exon 7 of 14) exon (NM_004424, exon 7 of 14) -3373 NM_001374 1775 Hs.103503 NM_001374 ENSG00000167968 DNASE1L2 DNAS1L2 deoxyribonuclease 1 like 2 protein-coding 0.761 nan 2.625 4.341 0.405 0.148 0.207 0.049 0.085 0.186 0.139 0.205 0.734 0.191 0.082 0.306 0.310 0.200 0.351 1.324 1.392 nan 0.266 0.403 0.318 0.210 nan 1.431 1.630 0.351 0.324 0.201 0.211 0.271 0.282 0.256 0.358 0.738 0.567 2.310 8.193 0.063 0.314 0.207 0.205 0.064 0.202 0.013 0.050 1344 chr4 77635865 77660019 + 0 NA intron (NM_020859, intron 3 of 10) intron (NM_020859, intron 3 of 10) 151238 NR_039655 100616254 NR_039655 ENSG00000283682 MIR548AH - microRNA 548ah ncRNA 0.696 0.608 0.782 0.283 0.443 0.259 0.279 0.450 0.093 0.162 0.113 0.288 0.481 0.333 0.073 0.436 0.474 1.363 4.650 0.578 0.680 1.227 0.387 0.332 0.371 0.219 0.346 0.929 0.873 0.350 0.169 0.224 0.323 0.171 0.158 0.165 0.310 0.684 0.493 0.037 0.177 0.012 0.065 0.279 0.288 0.004 0.059 0.090 0.093 1278 chr3 121280263 121294557 + 0 NA intron (NM_001012659, intron 1 of 4) intron (NM_001012659, intron 1 of 4) 632 NM_001012659 503582 Hs.224976 NM_001012659 ENSG00000186103 ARGFX - arginine-fifty homeobox protein-coding 1.491 nan 1.041 0.203 0.499 0.224 0.100 0.173 0.180 0.160 0.235 0.140 0.205 0.045 0.106 0.393 0.188 0.243 0.337 0.373 0.373 1.148 0.266 0.320 0.322 2.245 nan 0.329 0.433 2.571 1.855 0.233 0.309 0.073 0.128 1.922 6.185 0.623 0.493 0.035 0.137 0.047 0.177 0.100 0.140 0.055 0.029 0.070 3.497 1398 chr5 59730014 59749596 + 0 NA intron (NM_001165899, intron 1 of 16) intron (NM_001165899, intron 1 of 16) -43735 NR_024617 25859 Hs.146312 NM_001039499 ENSG00000152931 PART1 NCRNA00206 prostate androgen-regulated transcript 1 (non-protein coding) ncRNA nan nan 0.684 0.041 0.244 0.074 0.125 0.118 0.058 0.048 0.085 0.024 0.324 0.055 0.145 0.225 0.096 0.232 0.242 0.192 0.247 nan 0.101 0.126 0.103 4.844 5.280 0.285 0.301 nan 0.265 0.077 0.142 0.073 0.104 0.165 0.395 0.133 0.259 1.312 0.081 0.005 0.307 0.125 0.024 0.020 0.476 0.025 0.101 324 chr11 33881691 33900037 + 0 NA intron (NM_001142315, intron 2 of 3) CpG 507 NM_001142316 4005 Hs.34560 NM_005574 ENSG00000135363 LMO2 RBTN2|RBTNL1|RHOM2|TTG2 LIM domain only 2 protein-coding 1.113 1.230 nan 0.354 1.094 0.620 0.708 0.429 0.114 1.408 0.595 0.255 2.559 0.094 0.092 2.271 3.501 1.707 0.989 0.865 0.978 0.268 0.112 0.441 0.368 1.469 2.131 0.376 0.448 0.580 0.441 4.023 5.411 0.403 0.321 0.275 nan 2.751 1.534 2.728 0.536 0.212 0.514 0.708 0.255 0.656 0.039 2.298 0.087 968 chr19 46217899 46234963 + 0 NA intron (NM_001329633, intron 1 of 1) AluJo|SINE|Alu 323 NM_001329634 23403 Hs.128702 NM_001080469 ENSG00000177051 FBXO46 20D7-FC4|FBXO34L|Fbx46 F-box protein 46 protein-coding 1.857 1.188 1.825 1.199 1.461 0.638 1.012 0.825 0.264 0.744 0.454 1.234 2.295 1.623 0.141 0.968 1.621 1.598 2.452 2.218 2.809 3.184 1.139 6.583 7.171 2.350 3.242 3.351 3.928 1.911 1.405 1.216 2.062 1.149 1.127 1.976 5.057 1.898 0.800 0.887 1.411 0.379 0.299 1.012 1.234 0.868 0.775 0.371 1.357 444 chr12 11857470 11887274 + 0 NA intron (NM_001987, intron 1 of 7) intron (NM_001987, intron 1 of 7) 69584 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 0.792 1.060 1.729 2.131 0.936 0.454 0.314 0.164 0.017 0.416 0.285 0.974 3.807 0.080 0.127 0.340 0.312 0.525 1.083 nan 0.975 1.614 0.697 0.626 0.738 0.385 0.682 4.865 5.344 0.460 0.246 0.839 1.549 0.089 0.110 0.263 0.467 0.809 0.608 2.433 1.471 0.032 0.032 0.314 0.974 0.036 0.075 1.249 0.112 1466 chr6 21141803 21147122 + 0 NA intron (NM_017774, intron 13 of 15) MIRc|SINE|MIR 367661 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 1.179 0.972 nan 0.263 1.019 0.482 0.529 0.171 0.052 0.120 0.216 0.813 nan 0.102 0.063 0.709 0.918 8.260 8.836 0.663 0.796 nan 0.295 1.061 1.159 1.106 1.514 0.477 0.467 0.708 0.382 0.298 0.636 0.299 0.297 0.349 1.015 0.852 0.637 0.433 0.181 0.036 0.118 0.529 0.813 0.076 0.058 0.055 0.277 279 chr10 112025595 112038166 + 0 NA intron (NM_005962, intron 3 of 5) intron (NM_005962, intron 3 of 5) 32827 NM_005871 10285 Hs.632093 NM_005871 ENSG00000119953 SMNDC1 SMNR|SPF30|TDRD16C survival motor neuron domain containing 1 protein-coding 1.351 nan 1.134 0.077 0.480 0.192 0.147 0.464 0.063 0.025 0.078 0.154 0.311 0.082 0.094 0.363 0.329 0.614 1.085 0.150 0.181 0.465 0.162 0.184 0.127 3.886 4.199 0.437 0.501 2.013 1.307 0.182 0.221 0.759 0.583 0.753 2.172 0.311 0.294 0.331 0.314 0.243 0.138 0.147 0.154 0.694 0.073 0.100 0.680 1096 chr2 201979201 201996443 + 0 NA intron (NM_001127183, intron 1 of 9) intron (NM_001127183, intron 1 of 9) 4553 NM_001127183 8837 Hs.390736 NM_003879 ENSG00000003402 CFLAR CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS CASP8 and FADD like apoptosis regulator protein-coding 3.389 nan 4.087 1.669 1.583 0.873 1.014 2.131 0.298 0.652 0.413 1.729 4.746 2.216 0.120 1.559 2.146 5.723 12.878 1.854 1.714 1.810 0.593 5.202 5.493 2.368 3.160 2.544 3.421 0.483 0.221 1.952 2.797 1.350 1.279 0.479 1.025 1.112 0.744 2.093 0.981 0.254 1.516 1.014 1.729 0.131 0.771 0.905 0.266 209 chr1 212777795 212783932 + 0 NA intron (NM_001030287, intron 1 of 3) CpG -1107 NM_001040619 467 Hs.460 NM_001674 ENSG00000162772 ATF3 - activating transcription factor 3 protein-coding 4.154 4.802 4.912 4.277 3.984 2.219 2.706 2.365 0.078 4.838 1.352 4.912 nan 2.050 0.137 1.446 1.903 7.987 14.383 4.114 3.217 nan 2.692 13.029 13.480 1.314 nan 2.668 6.308 1.552 2.148 0.879 1.426 2.363 2.719 1.765 4.740 1.603 1.308 1.616 3.015 0.281 1.683 2.706 4.912 0.699 1.786 0.342 1.232 41 chr1 19032360 19059398 + 0 NA intron (NM_002584, intron 7 of 7) intron (NM_002584, intron 7 of 7) 88379 NM_013945 5081 Hs.113253 NM_002584 ENSG00000009709 PAX7 HUP1|PAX7B|RMS2 paired box 7 protein-coding 0.847 0.740 nan 0.072 0.241 0.106 0.081 0.086 0.060 0.058 0.076 0.053 0.343 0.098 0.084 0.205 0.181 0.110 0.123 0.338 0.423 0.080 0.048 0.244 nan 0.151 nan 0.147 0.168 nan 0.424 0.183 0.239 0.037 0.063 1.477 5.463 0.272 0.310 0.039 0.141 0.007 0.041 0.081 0.053 0.266 0.034 0.022 2.117 1630 chr8 37653787 37662876 + 0 NA intron (NM_032777, intron 1 of 18) intron (NM_032777, intron 1 of 18) 3930 NM_032777 25960 Hs.274136 NM_032777 ENSG00000020181 ADGRA2 GPR124|TEM5 adhesion G protein-coupled receptor A2 protein-coding 1.290 0.942 nan 0.889 0.519 0.141 0.770 3.304 0.507 0.311 0.182 0.481 1.086 0.466 0.092 6.364 8.174 3.536 3.297 1.893 1.835 0.976 0.307 0.762 0.697 0.742 1.083 0.353 0.401 0.529 0.593 1.392 2.959 0.389 0.323 0.770 1.430 0.757 0.773 0.128 0.264 0.106 0.061 0.770 0.481 0.695 1.348 0.256 550 chr13 100504522 100530705 + 0 NA intron (NM_206808, intron 5 of 8) intron (NM_206808, intron 5 of 8) 91806 NR_120421 101927437 Hs.619936 NR_120421 LOC101927437 - uncharacterized LOC101927437 ncRNA 1.958 5.332 4.557 0.947 0.315 0.208 10.913 0.175 0.092 1.495 0.974 0.399 1.054 0.058 0.128 0.686 0.466 0.197 0.141 1.150 1.232 2.543 0.866 0.195 0.153 2.888 nan 1.066 1.327 0.923 0.813 0.228 0.506 3.390 4.656 0.458 nan 1.765 0.917 0.115 0.203 1.039 0.169 10.913 0.399 0.767 0.977 0.129 0.165 409 chr11 126454686 126479681 + 0 NA intron (NM_032531, intron 1 of 16) intron (NM_032531, intron 1 of 16) -55490 NR_120532 101929427 Hs.600341 NR_120532 ENSG00000254607 LOC101929427 - uncharacterized LOC101929427 ncRNA 0.920 2.706 0.647 0.482 0.762 0.398 2.400 0.077 0.058 0.311 0.203 1.448 5.776 0.022 0.120 0.517 0.644 0.534 1.155 2.075 1.950 2.991 0.696 0.133 0.151 0.315 0.567 1.378 1.826 0.553 0.493 0.641 0.760 0.444 0.759 0.408 nan 1.366 0.856 4.864 1.305 0.107 0.315 2.400 1.448 0.136 0.069 0.157 0.361 489 chr12 58738640 58753403 + 0 NA Intergenic Intergenic -239463 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA nan 0.793 0.668 1.405 0.362 0.229 0.377 0.424 0.121 0.694 0.484 0.294 0.387 0.022 0.089 nan 0.301 0.279 0.310 0.303 nan 6.746 2.222 0.307 0.347 0.349 nan 0.648 nan 0.420 0.168 0.108 0.295 0.294 0.224 0.248 0.441 2.509 1.349 0.019 0.060 0.078 0.059 0.377 0.294 0.105 0.048 0.053 0.208 1792 chrX 135960750 135968630 + 0 NA Intergenic L2a|LINE|L2 -1751 NR_028477 27316 Hs.380118 NM_002139 ENSG00000147274 RBMX HNRNPG|HNRPG|MRXS11|RBMXP1|RBMXRT|RNMX|hnRNP-G RNA binding motif protein, X-linked protein-coding 3.468 1.991 2.927 2.229 3.969 1.728 2.162 0.846 0.121 0.973 0.262 1.744 5.391 1.398 0.047 3.402 3.387 2.854 4.064 4.904 4.841 3.772 1.508 5.827 5.794 3.079 4.233 3.615 5.830 9.095 9.385 2.581 4.295 2.951 2.974 6.152 8.252 1.839 1.151 1.227 1.728 0.581 1.416 2.162 1.744 0.526 0.854 1.334 2.860 77 chr1 48142262 48157194 + 0 NA Intergenic L3|LINE|CR1 -246739 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA nan 0.729 nan 0.064 0.384 0.198 0.464 0.096 0.141 0.095 0.178 0.064 0.413 5.680 0.161 0.328 0.315 0.187 0.306 0.531 0.646 0.116 0.052 0.314 0.292 0.159 nan nan 0.576 0.329 0.169 0.232 nan 0.137 0.132 0.222 0.329 0.632 0.603 0.157 0.189 0.024 0.084 0.464 0.064 0.058 0.020 0.039 0.034 1134 chr20 3775480 3802736 + 0 NA promoter-TSS (NR_109859) promoter-TSS (NR_109859) -33 NR_109859 101929125 Hs.744106 NR_109859 ENSG00000275491 LINC01730 - long intergenic non-protein coding RNA 1730 ncRNA 3.068 5.413 4.948 3.104 5.314 2.651 2.628 2.638 0.514 1.453 0.753 3.170 9.568 0.890 0.078 4.052 6.673 2.346 6.025 5.191 4.841 4.839 1.530 3.844 4.255 2.702 3.468 7.060 7.656 2.558 2.355 2.011 3.629 3.929 4.205 2.022 2.566 3.076 1.464 3.739 4.442 0.888 1.576 2.628 3.170 1.090 3.070 2.006 0.924 405 chr11 118961843 118966239 + 0 NA TTS (NM_002105) TTS (NM_002105) 2136 NM_002105 3014 Hs.477879 NM_002105 ENSG00000188486 H2AFX H2A.X|H2A/X|H2AX H2A histone family member X protein-coding 3.348 3.387 3.606 4.536 4.220 1.914 2.618 0.548 2.545 1.845 5.349 10.144 3.705 0.159 6.383 7.565 4.151 6.379 7.024 6.519 8.366 2.771 7.306 6.170 3.999 5.672 6.153 6.260 4.704 7.883 7.877 16.894 3.819 3.655 4.480 4.658 2.410 1.660 4.568 4.464 1.005 4.499 2.618 5.349 0.726 2.350 3.578 1.463 1193 chr21 27103339 27110119 + 0 NA promoter-TSS (NM_001197297) promoter-TSS (NM_001197297) -529 NM_001197297 2551 Hs.473470 NM_002040 ENSG00000154727 GABPA E4TF1-60|E4TF1A|NFT2|NRF2|NRF2A|RCH04A07 GA binding protein transcription factor alpha subunit protein-coding 4.965 2.581 4.927 4.585 3.643 2.344 3.419 2.020 0.355 1.436 0.784 4.485 10.017 3.147 0.091 7.600 6.420 5.799 7.440 7.398 7.879 5.064 3.052 11.951 12.598 6.095 7.310 6.506 9.300 12.029 10.530 4.427 7.418 5.137 5.836 6.766 6.486 4.361 2.514 2.446 4.029 0.929 2.388 3.419 4.485 1.179 2.391 2.220 2.615 66 chr1 40767952 40774540 + 0 NA intron (NM_001852, intron 21 of 31) MIR3|SINE|MIR 11693 NM_001852 1298 Hs.418012 NM_001852 ENSG00000049089 COL9A2 DJ39G22.4|EDM2|MED|STL5 collagen type IX alpha 2 chain protein-coding 10.792 0.680 nan 1.618 0.790 0.319 0.481 0.230 0.074 0.260 0.251 0.255 0.568 0.166 0.070 0.404 0.494 0.284 0.427 1.797 1.361 0.370 0.205 0.600 0.531 0.515 nan nan 1.702 0.880 1.108 0.367 nan 0.395 0.519 0.369 0.728 2.046 1.362 0.194 0.108 0.029 15.656 0.481 0.255 0.220 0.097 0.076 0.121 1541 chr7 1542735 1554178 + 0 NA Intergenic MLT1C|LTR|ERVL-MaLR -4438 NM_001080453 26173 Hs.532188 NM_001080453 ENSG00000164880 INTS1 INT1|NET28 integrator complex subunit 1 protein-coding 2.077 2.598 3.720 1.311 4.101 2.177 1.618 0.499 0.295 1.022 0.819 4.846 nan 1.862 0.239 1.875 2.103 1.096 nan 3.779 3.412 nan 0.696 1.471 1.584 0.882 1.431 nan 5.101 1.336 1.175 1.101 1.948 2.125 1.948 1.127 1.750 1.917 0.857 0.885 2.199 0.548 1.018 1.618 4.846 1.452 3.885 0.942 0.627 352 chr11 62491334 62500482 + 0 NA promoter-TSS (NM_001318814) promoter-TSS (NM_001318814) -44 NM_173810 283237 Hs.31704 NM_173810 ENSG00000162222 TTC9C - tetratricopeptide repeat domain 9C protein-coding nan 2.861 2.344 5.096 4.970 2.276 3.224 1.615 0.370 2.046 1.328 4.777 8.823 4.518 0.228 6.881 7.157 5.178 7.390 9.964 9.413 5.571 3.183 8.464 8.555 3.983 5.387 5.587 8.556 5.994 5.129 5.116 9.798 4.536 5.501 3.775 4.640 2.906 1.116 4.151 6.027 1.612 2.948 3.224 4.777 0.946 1.919 3.311 1.551 1055 chr2 119579844 119613954 + 0 NA Intergenic Intergenic 8860 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 0.481 nan 0.418 0.044 0.204 0.103 0.088 0.734 0.090 0.065 0.102 0.060 nan 0.102 0.054 0.239 0.118 0.366 0.478 0.217 nan 0.132 0.085 0.256 0.246 0.101 0.155 0.194 0.222 0.317 0.107 7.609 13.322 0.239 0.145 0.151 0.285 0.108 0.191 0.091 0.036 0.087 0.042 0.088 0.060 0.015 0.009 6.980 0.095 642 chr15 32951834 32987493 + 0 NA intron (NM_001144757, intron 2 of 5) MamRep605|Unknown|Unknown -4397 NR_135505 105370757 Hs.738329 NR_135505 ENSG00000241818 LOC105370757 - uncharacterized LOC105370757 ncRNA 0.771 nan nan 0.266 0.542 0.274 0.353 1.567 0.175 0.302 0.227 0.195 0.559 0.067 0.069 0.373 0.302 3.851 6.877 0.340 0.358 0.219 0.083 0.148 0.140 0.363 0.564 0.543 0.621 0.514 0.219 0.737 0.723 0.940 1.513 0.218 0.282 1.028 0.615 1.026 0.190 0.302 0.027 0.353 0.195 0.051 0.179 0.423 0.073 1074 chr2 166317030 166333739 + 0 NA promoter-TSS (NM_001172173) promoter-TSS (NM_001172173) -773 NM_001172173 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 1.694 1.070 nan 0.359 0.563 0.347 2.029 0.377 0.116 0.612 0.553 0.303 0.402 0.059 0.093 2.019 1.471 2.256 1.500 1.102 1.346 3.231 1.138 0.387 0.412 4.437 5.035 0.646 0.748 6.889 6.743 0.309 0.475 0.010 0.009 4.017 6.769 0.788 0.522 0.030 0.208 0.006 0.281 2.029 0.303 0.296 0.364 0.139 1.786 503 chr12 108953375 108964661 + 0 NA intron (NM_213595, intron 2 of 4) intron (NM_213595, intron 2 of 4) 3779 NM_001301141 23479 Hs.615131 NM_014301 ENSG00000136003 ISCU 2310020H20Rik|HML|ISU2|NIFU|NIFUN|hnifU iron-sulfur cluster assembly enzyme protein-coding 3.200 2.336 nan 2.840 2.906 1.551 1.973 2.288 0.170 1.735 0.906 2.417 5.978 2.975 0.144 3.868 3.085 3.727 6.091 5.168 5.334 5.398 3.410 7.823 8.294 2.870 3.810 6.815 8.147 5.099 4.445 3.168 4.175 4.136 6.534 3.992 3.283 4.037 2.113 2.808 4.096 0.628 1.151 1.973 2.417 1.091 2.383 0.982 0.961 1491 chr6 44267905 44302550 + 0 NA Intergenic MER58D|DNA|hAT-Charlie -4164 NM_020745 57505 Hs.158381 NM_020745 ENSG00000124608 AARS2 AARSL|COXPD8|LKENP|MT-ALARS|MTALARS alanyl-tRNA synthetase 2, mitochondrial protein-coding 1.403 1.121 1.387 0.333 0.475 0.231 0.503 0.231 0.099 0.186 0.160 0.376 0.707 0.251 0.106 0.705 0.642 0.481 0.663 0.686 0.813 1.247 0.560 0.643 0.691 0.423 0.649 0.751 nan 1.321 1.277 0.332 0.507 0.346 0.347 1.323 3.547 0.616 0.548 0.118 0.418 0.058 0.160 0.503 0.376 0.126 0.135 0.069 1.894 430 chr12 6872025 6889245 + 0 NA TTS (NM_002824) TTS (NM_002824) -1035 NM_002286 3902 Hs.409523 NM_002286 ENSG00000089692 LAG3 CD223 lymphocyte activating 3 protein-coding 2.766 nan nan 3.992 2.880 1.383 3.097 0.560 0.103 1.496 0.921 3.101 6.027 3.548 0.125 1.294 1.903 1.388 2.059 nan 5.280 7.005 2.692 3.751 4.092 3.122 4.209 3.220 3.252 4.707 4.037 1.724 3.192 2.792 2.385 3.517 nan 1.193 0.482 3.796 3.282 1.422 1.956 3.097 3.101 6.538 0.904 1.322 2.985 772 chr17 37599859 37627831 + 0 NA Intergenic AluSp|SINE|Alu -3919 NM_015083 51755 Hs.345028 NM_015083 ENSG00000167258 CDK12 CRK7|CRKR|CRKRS cyclin dependent kinase 12 protein-coding nan 1.666 1.455 0.716 2.115 1.101 1.105 0.785 0.372 0.785 0.534 1.208 2.423 0.749 0.117 2.314 1.986 2.357 3.162 nan 2.587 2.841 1.526 8.047 8.784 1.537 2.121 2.712 4.378 nan 3.203 1.922 2.783 1.371 2.148 2.486 2.778 1.731 0.996 0.678 0.833 0.228 0.651 1.105 1.208 0.315 0.537 0.551 0.696 1286 chr3 133088815 133104191 + 0 NA intron (NM_001282865, intron 2 of 3) intron (NM_001282865, intron 2 of 3) -22336 NM_003571 8419 Hs.659862 NM_003571 ENSG00000170819 BFSP2 CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN beaded filament structural protein 2 protein-coding 0.986 nan nan 0.132 0.635 0.251 0.369 0.321 0.137 0.194 0.125 0.327 0.299 0.014 0.089 1.089 1.059 9.372 5.063 0.809 0.827 1.164 0.447 1.985 2.181 0.645 1.204 0.222 0.377 nan 0.618 0.190 0.426 0.076 0.182 0.596 1.383 1.052 0.720 0.065 0.126 0.025 0.093 0.369 0.327 0.089 0.020 0.026 0.546 1267 chr3 108783633 108793283 + 0 NA intron (NM_014429, intron 9 of 27) intron (NM_014429, intron 9 of 27) -31845 NR_144461 100506506 Hs.278908 NR_144461 MORC1-AS1 - MORC1 antisense RNA 1 ncRNA nan nan 0.644 0.092 0.383 0.132 0.131 0.106 0.133 0.083 0.092 0.297 0.194 0.022 0.127 3.872 4.013 7.717 2.021 0.311 0.334 0.266 0.105 0.494 0.450 0.176 0.204 0.210 0.229 1.452 0.613 1.029 1.543 0.065 0.037 0.265 0.348 0.515 0.524 0.023 0.083 0.020 0.017 0.131 0.297 0.010 0.021 0.697 0.038 127 chr1 153957413 153964321 + 0 NA Intergenic AluY|SINE|Alu -2014 NR_073553 5872 Hs.151536 NM_002870 ENSG00000143545 RAB13 GIG4 RAB13, member RAS oncogene family protein-coding nan nan 2.640 2.634 2.220 1.209 2.785 2.167 0.435 1.943 1.259 2.973 8.964 2.924 0.180 2.921 3.121 5.149 7.321 5.211 nan 6.171 2.585 5.725 5.949 4.791 6.189 5.655 6.374 4.077 3.495 4.328 6.526 3.677 3.913 3.174 4.708 2.644 1.332 1.804 2.561 0.681 1.076 2.785 2.973 0.795 4.639 2.609 1.511 732 chr17 4881587 4892286 + 0 NA intron (NM_015099, intron 3 of 22) AluSx1|SINE|Alu 3729 NM_001171167 23125 Hs.632242 NM_015099 ENSG00000108509 CAMTA2 - calmodulin binding transcription activator 2 protein-coding 1.831 1.189 1.513 0.534 1.209 0.688 0.621 0.557 0.161 0.513 0.311 1.758 1.563 0.903 0.120 5.925 7.484 5.469 3.012 2.942 2.808 2.566 0.776 6.844 7.274 1.269 1.754 1.710 2.023 1.425 1.398 1.892 2.992 0.637 0.489 1.462 2.802 0.899 0.580 1.528 1.106 0.115 0.726 0.621 1.758 0.738 1.561 0.970 0.707 881 chr18 52946803 52961028 + 0 NA intron (NM_001243228, intron 8 of 19) intron (NM_001243228, intron 8 of 19) 15937 NM_001243236 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding nan 1.037 0.863 0.143 0.438 0.214 0.287 0.478 0.057 0.198 0.214 0.461 0.289 0.186 0.082 0.437 0.430 0.321 0.672 1.171 1.365 0.694 0.373 0.573 0.490 1.174 1.344 0.625 0.521 1.577 1.030 0.190 0.330 0.617 0.934 0.404 0.657 nan 1.895 0.087 0.176 0.067 0.261 0.287 0.461 0.230 0.107 0.052 0.155 718 chr16 80061030 80082692 + 0 NA Intergenic MIRb|SINE|MIR 242715 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA nan 1.707 0.546 0.339 0.461 0.237 0.171 0.037 0.122 0.029 0.054 0.078 1.401 0.010 0.088 0.259 0.176 0.190 0.492 0.334 0.334 0.098 0.056 0.278 0.342 0.074 0.144 0.778 1.362 0.389 0.182 0.088 0.111 0.052 0.058 0.060 0.134 0.220 0.267 3.550 1.012 0.022 0.153 0.171 0.078 0.207 0.028 0.023 166 chr1 165187599 165212487 + 0 NA intron (NM_177398, intron 4 of 8) MIR3|SINE|MIR 125435 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 2.602 nan 1.288 0.573 1.086 0.741 1.385 0.145 0.125 1.149 0.494 0.708 2.680 0.030 0.105 0.989 2.264 0.590 0.637 2.118 nan 0.554 0.213 0.127 0.125 0.635 0.880 1.543 nan 3.878 3.974 1.733 3.804 3.984 3.663 3.361 6.087 1.382 0.966 1.405 0.776 1.207 0.660 1.385 0.708 0.479 0.098 2.825 3.170 1092 chr2 198377695 198382517 + 0 NA promoter-TSS (NM_199482) promoter-TSS (NM_199482) -189 NM_199482 25843 Hs.633165 NM_015387 ENSG00000115540 MOB4 2C4D|CGI-95|MOB1|MOB3|MOBKL3|PHOCN|PREI3 MOB family member 4, phocein protein-coding 4.061 nan 4.767 5.074 4.475 1.960 2.496 1.755 0.458 1.616 1.077 4.111 9.161 1.735 0.109 3.719 4.121 4.101 5.375 4.851 5.057 4.071 2.005 11.033 11.569 3.330 3.959 5.765 9.377 12.602 13.162 3.398 7.070 2.075 2.374 8.458 12.774 2.366 1.047 1.907 2.078 0.375 1.811 2.496 4.111 1.368 2.863 1.517 7.423 1130 chr20 649925 658457 + 0 NA intron (NM_033129, intron 1 of 1) intron (NM_033129, intron 1 of 1) 2632 NM_033129 85508 Hs.355284 NM_033129 ENSG00000215397 SCRT2 ZNF898B scratch family transcriptional repressor 2 protein-coding 1.994 2.182 0.494 0.297 0.731 0.247 1.618 0.088 0.033 1.103 0.601 0.070 2.393 0.088 0.059 10.622 12.765 0.164 0.157 0.641 0.509 0.700 0.200 0.224 0.167 3.126 3.540 0.285 0.302 5.359 5.991 3.409 5.421 0.161 0.192 2.629 2.437 0.231 0.192 0.962 0.094 0.033 0.046 1.618 0.070 2.120 0.155 2.530 0.201 992 chr19 50422202 50429461 + 0 NA intron (NM_001193357, intron 1 of 1) intron (NM_001193357, intron 1 of 1) -6128 NM_012068 22809 Hs.9754 NM_012068 ENSG00000169136 ATF5 ATFX|HMFN0395 activating transcription factor 5 protein-coding 1.444 0.770 1.053 0.333 13.275 7.187 1.740 0.237 0.140 0.353 0.080 2.287 0.957 1.641 0.100 1.880 2.943 0.477 0.799 4.708 4.364 0.758 0.290 3.621 3.763 1.045 1.405 0.614 0.787 0.874 0.936 5.050 5.828 0.418 0.603 0.410 1.485 1.008 0.488 2.537 3.198 0.144 3.236 1.740 2.287 1.869 0.161 2.537 0.269 372 chr11 72336448 72393481 + 0 NA intron (NM_002599, intron 1 of 30) MIR3|SINE|MIR -11460 NM_001243784 5138 Hs.503163 NM_002599 ENSG00000186642 PDE2A CGS-PDE|PDE2A1|PED2A4|cGSPDE phosphodiesterase 2A protein-coding nan 0.572 0.663 0.255 0.513 0.250 0.479 0.080 0.053 0.127 0.069 0.141 0.679 0.089 0.077 2.829 5.250 0.344 0.325 1.064 1.059 0.873 0.331 1.379 1.505 0.966 1.533 1.085 1.178 1.250 1.299 1.105 1.320 0.508 0.652 0.518 1.244 0.464 0.439 1.459 1.106 0.100 0.541 0.479 0.141 0.481 0.183 0.439 0.269 182 chr1 182807310 182812469 + 0 NA intron (NR_033302, intron 1 of 28) MIRb|SINE|MIR 1450 NR_033302 1660 Hs.191518 NM_001357 ENSG00000135829 DHX9 DDX9|LKP|NDH2|NDHII|RHA DExH-box helicase 9 protein-coding nan 4.388 5.194 3.222 4.685 2.423 3.283 2.275 0.560 3.036 1.575 3.761 7.830 3.462 0.189 7.619 6.685 8.649 12.112 8.724 nan 7.730 3.774 nan 11.602 4.125 5.581 5.831 9.378 6.830 7.078 7.857 12.777 7.625 10.011 7.819 8.419 3.685 2.066 2.646 4.173 1.759 2.697 3.283 3.761 0.716 1.552 3.578 2.591 1570 chr7 30632802 30638187 + 0 NA intron (NM_002047, intron 1 of 16) intron (NM_002047, intron 1 of 16) 985 NM_002047 2617 Hs.404321 NM_002047 ENSG00000106105 GARS CMT2D|DSMAV|GlyRS|HMN5|SMAD1 glycyl-tRNA synthetase protein-coding 7.797 4.532 6.108 5.292 4.550 2.229 4.011 5.639 0.238 4.001 1.880 8.008 9.516 9.784 0.301 10.111 10.664 5.068 6.997 9.324 nan 9.678 4.668 23.752 25.518 5.449 nan nan nan 5.714 6.975 5.053 8.321 8.672 9.442 5.753 9.421 3.477 1.989 3.658 4.572 1.181 4.679 4.011 8.008 1.404 3.618 3.043 2.292 903 chr18 73915375 73933213 + 0 NA Intergenic Intergenic 89341 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA nan nan 0.689 3.478 5.516 2.750 1.405 0.063 0.063 3.155 2.026 6.275 1.532 0.030 0.086 0.572 0.767 0.686 1.028 4.458 nan 15.410 6.388 0.308 0.361 0.083 0.147 5.629 nan 0.501 0.314 0.173 0.238 4.316 4.130 0.183 0.311 3.002 1.473 0.022 0.535 0.656 0.476 1.405 6.275 0.011 0.103 0.033 0.069 1182 chr20 61846454 61859340 + 0 NA Intergenic Intergenic -5359 NM_017798 54915 Hs.744852 NM_017798 ENSG00000149658 YTHDF1 C20orf21 YTH N6-methyladenosine RNA binding protein 1 protein-coding 1.916 2.162 1.917 1.516 1.088 0.617 1.516 0.833 0.138 0.508 0.307 1.794 2.799 1.054 0.107 2.820 nan 1.427 1.825 2.880 2.716 3.390 1.216 4.732 4.466 1.324 1.914 1.638 2.510 2.148 2.091 1.628 2.389 0.701 0.768 1.171 1.204 1.881 1.221 5.777 2.343 0.097 0.445 1.516 1.794 0.443 1.746 0.337 0.338 346 chr11 61558464 61563764 + 0 NA intron (NM_004111, intron 1 of 1) (TTAA)n|Simple_repeat|Simple_repeat 1005 NM_004111 2237 Hs.409065 NM_004111 ENSG00000168496 FEN1 FEN-1|MF1|RAD2 flap structure-specific endonuclease 1 protein-coding nan 5.377 3.535 8.158 6.720 3.968 5.699 3.129 0.334 2.913 1.582 5.918 12.828 4.374 0.169 13.234 9.110 10.675 14.745 17.051 17.370 10.845 8.519 17.507 19.792 8.650 10.137 10.069 16.054 10.204 10.040 9.321 13.059 8.780 13.955 8.010 7.198 4.110 2.134 5.663 4.098 2.301 2.053 5.699 5.918 1.839 3.050 2.523 2.052 685 chr16 3193491 3246115 + 0 NA Intergenic AluSx|SINE|Alu 25511 NR_132322 197350 Hs.434132 NR_132322 ENSG00000228146 CASP16P CASP16 caspase 16, pseudogene pseudo 0.898 nan 0.893 0.681 0.612 0.354 0.264 0.220 0.110 0.236 0.183 0.227 2.421 0.545 0.090 0.375 0.393 0.237 0.372 0.485 0.449 nan 0.734 0.648 0.742 0.336 nan 0.537 0.613 1.362 1.265 0.282 0.404 0.899 0.821 0.488 1.158 0.699 0.427 0.235 0.558 0.113 0.089 0.264 0.227 0.192 0.377 0.111 0.196 1402 chr5 71076487 71087992 + 0 NA Intergenic Intergenic 67249 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 0.966 nan 1.171 0.180 1.865 0.961 0.695 0.204 0.070 0.203 0.120 0.270 1.482 0.087 0.112 0.424 0.451 0.227 0.313 0.676 0.674 10.259 3.615 0.180 0.173 0.600 nan 0.819 0.677 1.544 1.385 0.282 0.301 2.214 2.883 0.622 1.269 1.206 0.759 0.377 0.649 0.447 0.110 0.695 0.270 0.050 0.362 0.086 0.662 29 chr1 8720488 8793576 + 0 NA intron (NM_001042681, intron 1 of 22) intron (NM_001042681, intron 1 of 22) 120667 NM_012102 473 Hs.463041 NM_012102 ENSG00000142599 RERE ARG|ARP|ATN1L|DNB1|NEDBEH arginine-glutamic acid dipeptide repeats protein-coding 1.928 nan 1.983 10.302 1.141 0.552 0.623 1.001 0.203 0.784 0.545 0.765 2.483 1.895 0.184 0.924 0.816 0.890 1.999 2.650 2.409 1.818 0.658 1.861 1.833 2.746 nan nan 8.113 nan 1.980 0.772 1.289 0.844 1.295 2.261 4.396 1.592 0.938 1.065 0.913 0.208 0.655 0.623 0.765 0.281 0.565 0.656 1.107 1255 chr3 25462523 25517300 + 0 NA intron (NR_110893, intron 1 of 6) intron (NR_110893, intron 1 of 6) -9890 NM_001290217 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 0.839 0.921 0.613 0.052 0.220 0.123 0.152 0.615 0.138 0.122 0.176 0.033 0.215 1.298 0.086 0.170 0.137 1.354 4.919 0.311 0.342 0.080 0.060 0.158 0.176 0.719 0.958 0.179 0.201 nan 0.392 0.156 0.235 1.383 1.668 0.120 0.214 0.353 0.367 0.038 0.039 0.364 0.134 0.152 0.033 0.035 0.103 0.034 0.057 885 chr18 53113947 53181047 + 0 NA TTS (NR_039754) TTS (NR_039754) 1045 NR_039754 100616290 NR_039754 ENSG00000264571 MIR4529 - microRNA 4529 ncRNA nan 0.824 0.941 0.310 0.836 0.490 0.358 0.508 0.108 0.583 0.350 0.788 0.455 2.295 0.110 0.561 0.482 2.102 2.495 1.039 1.084 5.039 2.524 0.650 0.674 1.234 1.457 0.601 0.610 0.466 0.247 0.637 0.866 2.141 2.483 0.287 0.559 nan 1.819 0.054 0.341 0.600 0.170 0.358 0.788 0.065 0.623 0.682 0.177 1787 chrX 40001128 40036982 + 0 NA intron (NM_001123384, intron 1 of 13) intron (NM_001123384, intron 1 of 13) 17527 NM_001123384 54880 Hs.659681 NM_017745 ENSG00000183337 BCOR ANOP2|MAA2|MCOPS2 BCL6 corepressor protein-coding 3.618 3.066 3.177 3.294 2.127 1.171 2.467 1.323 0.175 2.389 1.002 3.227 4.010 1.619 0.054 1.221 1.396 2.131 3.465 5.866 4.812 3.258 1.052 3.169 3.181 0.772 1.040 4.459 6.028 4.734 6.376 1.571 1.887 2.588 1.975 1.445 2.620 1.374 0.752 3.530 1.740 0.563 2.130 2.467 3.227 0.979 1.366 1.110 1.289 37 chr1 16466229 16509133 + 0 NA Intergenic AluSc|SINE|Alu -5077 NM_001329090 1969 Hs.171596 NM_004431 ENSG00000142627 EPHA2 ARCC2|CTPA|CTPP1|CTRCT6|ECK EPH receptor A2 protein-coding 1.555 0.852 nan 0.225 0.309 0.196 0.765 1.140 0.266 0.322 0.191 0.129 0.765 2.233 0.119 0.868 1.254 1.024 3.764 1.017 1.096 1.188 0.310 0.835 nan 0.569 nan 0.801 1.189 nan 0.537 0.503 0.628 0.244 0.344 0.467 0.928 0.870 0.593 0.042 0.043 0.026 0.148 0.765 0.129 0.218 0.294 0.201 0.211 947 chr19 33863148 33868148 + 0 NA intron (NM_001252296, intron 1 of 1) intron (NM_001252296, intron 1 of 1) 218 NM_001252296 1054 Hs.429666 NM_001806 ENSG00000153879 CEBPG GPE1BP|IG/EBP-1 CCAAT/enhancer binding protein gamma protein-coding 5.142 4.276 4.831 7.910 4.012 2.336 2.220 3.133 0.290 1.909 0.795 4.354 15.243 4.493 0.209 3.906 5.192 4.438 6.479 5.415 4.688 7.882 4.775 11.742 12.136 2.973 4.327 5.626 7.784 nan 6.516 12.215 15.038 5.360 7.386 3.681 4.079 3.223 1.626 4.329 5.172 0.823 2.093 2.220 4.354 0.911 2.193 2.763 1.035 1474 chr6 31761112 31765596 + 0 NA 5' UTR (NM_006295, exon 1 of 30).5 5' UTR (NM_006295, exon 1 of 30).5 358 NM_006295 7407 Hs.520026 NM_006295 ENSG00000204394 VARS G7A|VARS1|VARS2 valyl-tRNA synthetase protein-coding nan 2.411 nan 3.956 3.627 2.142 10.969 3.497 0.600 2.620 1.049 7.747 4.226 5.462 0.235 8.079 6.762 5.083 nan nan 7.586 6.937 4.096 15.023 15.562 4.065 6.098 10.203 12.825 7.663 7.125 4.505 7.255 6.907 7.560 5.759 7.542 4.515 2.141 2.050 3.895 1.606 1.910 10.969 7.747 2.759 3.152 1.104 3.263 1123 chr2 241499197 241509193 + 0 NA TTS (NM_001033575) TTS (NM_001033575) -3668 NM_001308375 51281 Hs.656615 NM_016552 ENSG00000144504 ANKMY1 ZMYND13 ankyrin repeat and MYND domain containing 1 protein-coding 2.766 nan 4.106 3.371 3.618 2.363 2.570 0.627 0.064 1.303 0.973 3.416 8.695 3.009 0.150 4.965 6.542 2.665 4.721 3.561 3.187 4.175 1.597 5.851 5.613 2.584 3.189 4.865 6.377 3.121 3.618 2.549 4.409 1.850 1.614 3.413 3.216 1.975 0.816 5.412 3.560 0.390 1.055 2.570 3.416 0.319 3.435 1.585 1.357 1320 chr3 192943667 192961508 + 0 NA Intergenic L2a|LINE|L2 -6330 NM_020386 57110 Hs.36761 NM_020386 ENSG00000127252 HRASLS A-C1|H-REV107|HRASLS1|HRSL1|HSD28 HRAS like suppressor protein-coding nan 1.436 1.648 0.771 0.674 0.261 0.573 0.147 0.127 0.441 0.348 0.124 nan 0.043 0.069 0.714 0.784 0.948 0.970 2.120 2.050 0.470 0.237 1.836 1.856 0.904 1.244 1.090 1.502 4.878 5.925 0.503 0.816 0.228 0.203 2.764 6.401 1.026 0.840 0.196 1.071 0.112 3.732 0.573 0.124 0.890 0.171 0.384 2.126 149 chr1 157962117 158052563 + 0 NA intron (NM_001286349, intron 1 of 12) MIRb|SINE|MIR 44277 NM_018240 55243 Hs.272234 NM_018240 ENSG00000183853 KIRREL NEPH1 kin of IRRE like (Drosophila) protein-coding nan nan 2.289 0.054 0.180 0.074 0.115 1.661 0.216 0.094 0.138 0.050 0.318 0.187 0.097 1.051 1.684 0.846 2.505 0.264 nan 0.124 0.069 0.256 0.268 0.972 1.426 0.499 0.705 0.644 0.441 0.711 0.898 0.544 0.443 1.362 3.397 0.801 0.639 0.025 0.187 0.136 0.043 0.115 0.050 0.048 0.022 0.157 0.864 330 chr11 44872270 44892598 + 0 NA intron (NM_130783, intron 2 of 8) intron (NM_130783, intron 2 of 8) 89325 NM_001318384 9537 Hs.554791 NM_006034 ENSG00000175274 TP53I11 PIG11 tumor protein p53 inducible protein 11 protein-coding nan 0.798 1.955 0.052 0.304 0.150 0.278 0.229 0.103 0.186 0.199 0.070 0.558 0.107 0.092 1.730 3.704 0.316 0.725 0.652 0.620 0.318 0.130 0.146 0.115 1.079 1.850 0.057 0.147 1.224 1.086 0.519 0.739 0.194 0.350 0.469 nan 1.014 0.718 0.603 0.034 0.066 0.035 0.278 0.070 0.517 0.045 0.117 0.201 1526 chr6 156598840 156604840 + 0 NA Intergenic Intergenic 333909 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA nan 0.709 0.936 6.081 0.497 0.203 0.761 0.349 0.096 0.993 0.663 1.971 1.843 0.018 0.136 2.806 4.192 0.248 0.318 4.382 nan 11.890 7.880 0.166 0.272 0.198 0.200 4.533 5.324 1.210 0.818 0.250 0.661 2.723 3.394 0.864 nan 0.915 0.569 1.900 2.147 0.943 0.265 0.761 1.971 0.098 0.905 0.988 0.591 73 chr1 43902045 43908565 + 0 NA exon (NM_015284, exon 49 of 71) exon (NM_015284, exon 49 of 71) -8905 NR_106793 102465440 NR_106793 ENSG00000274975 MIR6735 hsa-mir-6735 microRNA 6735 ncRNA nan 0.569 nan 1.540 1.776 0.938 0.221 0.127 0.111 1.593 0.399 1.746 0.972 0.131 0.126 0.453 0.555 0.325 0.860 5.932 5.117 0.254 0.101 0.271 0.292 0.379 nan 15.115 11.473 0.453 0.417 0.937 nan 0.052 0.085 0.369 1.256 2.213 1.251 1.207 2.632 0.057 0.212 0.221 1.746 0.136 1.404 0.227 0.378 1056 chr2 121624193 121659449 + 0 NA intron (NM_005270, intron 1 of 12) intron (NM_005270, intron 1 of 12) 86954 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 1.353 nan nan 0.063 0.179 0.100 2.175 0.172 0.064 0.058 0.085 0.085 1.081 0.037 0.075 0.548 0.562 0.313 0.354 1.229 1.403 0.152 0.102 0.606 0.625 0.510 0.732 2.720 2.277 0.901 0.935 0.270 0.365 0.149 0.121 0.364 0.658 0.591 0.397 2.601 0.452 0.054 0.066 2.175 0.085 0.643 0.023 0.112 0.179 1608 chr7 115337269 115374997 + 0 NA Intergenic Intergenic 252234 NM_001244583 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding nan 0.720 0.885 0.484 0.529 0.242 0.906 0.197 0.123 0.433 0.441 0.638 0.947 0.095 0.171 0.436 0.316 0.517 0.622 0.301 0.413 0.186 0.113 0.301 0.265 0.641 0.754 0.907 1.469 0.453 0.213 0.263 0.556 6.987 9.532 0.514 1.250 1.033 0.598 0.050 0.532 2.815 0.238 0.906 0.638 0.057 0.430 0.168 0.140 896 chr18 60036346 60045601 + 0 NA intron (NM_003839, intron 9 of 9) intron (NM_003839, intron 9 of 9) 48453 NM_001270950 8792 Hs.204044 NM_003839 ENSG00000141655 TNFRSF11A CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCER TNF receptor superfamily member 11a protein-coding 0.904 0.778 0.688 0.753 0.977 0.501 0.692 0.145 0.070 0.473 0.376 0.536 0.577 0.058 0.061 0.421 0.320 0.400 0.474 2.122 2.595 2.039 0.834 0.660 nan 1.385 nan 0.590 0.921 0.731 0.413 0.130 0.318 0.955 0.867 0.277 0.376 7.123 4.176 0.348 1.018 0.143 0.078 0.692 0.536 0.252 0.154 0.149 0.214 1675 chr8 116430723 116446246 + 0 NA intron (NM_001330599, intron 4 of 5) intron (NM_001330599, intron 4 of 5) 241755 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding nan nan 1.050 0.089 0.252 0.126 0.024 1.124 0.104 0.060 0.073 0.075 0.435 0.042 0.084 0.235 0.145 0.157 0.342 0.365 0.419 nan 0.090 0.676 nan 2.556 nan 0.223 0.284 0.557 0.250 0.096 0.205 2.958 3.480 0.394 0.702 0.545 0.478 0.032 0.097 0.612 0.041 0.024 0.075 0.012 0.052 0.044 0.162 344 chr11 57433628 57441990 + 0 NA intron (NM_015457, intron 1 of 11) AluSx|SINE|Alu 2335 NM_015457 25921 Hs.27239 NM_015457 ENSG00000156599 ZDHHC5 DHHC5|ZNF375 zinc finger DHHC-type containing 5 protein-coding 2.546 2.576 1.815 3.516 3.422 1.570 1.822 1.654 0.165 1.360 0.707 2.646 6.696 2.994 0.190 5.374 5.950 5.483 7.196 5.411 5.859 4.777 3.181 8.927 9.556 3.366 3.784 5.214 7.200 4.395 4.383 4.727 6.717 3.663 4.506 2.939 3.604 2.286 1.331 2.247 2.231 0.683 1.053 1.822 2.646 1.070 1.093 1.430 0.931 873 chr18 45720381 45764119 + 0 NA intron (NM_001318841, intron 2 of 4) MER4D1|LTR|ERV1 -78570 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding nan 2.008 0.803 1.439 0.484 0.238 1.416 0.076 0.056 0.433 0.134 1.745 3.831 0.030 0.068 0.440 0.476 0.368 0.514 3.931 4.321 3.274 1.433 0.136 0.169 0.195 0.322 4.294 3.184 0.620 0.514 0.196 0.265 0.828 1.199 0.199 nan 4.884 2.564 3.772 1.218 0.177 0.089 1.416 1.745 0.065 1.208 0.066 0.104 588 chr14 38022972 38037648 + 0 NA Intergenic L2c|LINE|L2 34015 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 1.113 5.151 0.862 0.115 0.185 0.153 0.130 0.122 0.175 0.112 0.090 0.090 0.431 0.237 0.111 0.189 0.143 0.181 0.380 0.271 0.338 0.350 0.157 0.224 0.257 0.704 0.889 0.288 0.379 0.818 0.337 0.131 0.248 1.186 1.136 0.287 0.514 0.692 0.590 0.046 0.383 0.189 0.118 0.130 0.090 0.033 0.152 0.060 0.149 671 chr15 91352393 91363718 + 0 NA intron (NM_001287248, intron 21 of 21) intron (NM_001287248, intron 21 of 21) -53767 NM_002569 5045 Hs.513153 NM_002569 ENSG00000140564 FURIN FUR|PACE|PCSK3|SPC1 furin, paired basic amino acid cleaving enzyme protein-coding nan nan nan 0.202 0.461 0.283 0.520 0.133 0.099 0.502 0.338 1.080 1.502 0.067 0.073 5.012 6.178 1.310 1.008 3.037 3.093 nan 0.174 2.061 2.060 0.470 0.757 0.486 0.719 nan 3.186 4.184 5.497 0.273 0.236 0.734 nan 1.819 0.989 0.269 0.874 0.051 0.313 0.520 1.080 0.537 0.167 2.719 0.381 360 chr11 65147831 65155274 + 0 NA promoter-TSS (NM_001278251) promoter-TSS (NM_001278251) -380 NM_001278251 283130 Hs.661604 NM_182556 ENSG00000162241 SLC25A45 - solute carrier family 25 member 45 protein-coding nan 3.947 2.644 4.616 3.978 2.087 3.020 2.375 0.496 2.211 0.693 4.628 10.716 3.612 0.196 3.398 5.713 4.517 8.700 8.675 7.520 7.353 2.584 6.126 7.216 4.053 5.417 7.589 8.944 4.757 4.578 2.693 3.602 4.090 4.880 1.002 2.333 3.399 1.674 5.090 4.022 0.908 1.292 3.020 4.628 1.208 2.679 1.956 0.497 1207 chr21 40262485 40300946 + 0 NA intron (NR_120405, intron 2 of 3) intron (NR_120405, intron 2 of 3) 28638 NR_120405 400867 Hs.689509 NR_120405 LOC400867 - uncharacterized LOC400867 ncRNA nan 0.907 0.934 0.947 1.426 0.782 0.313 0.445 0.143 0.325 0.181 3.421 3.393 0.048 0.074 0.347 0.276 0.598 0.729 1.267 1.470 nan 0.335 0.319 0.278 0.197 nan 6.873 6.172 0.471 0.193 0.179 0.277 0.320 0.288 0.134 0.217 3.122 1.457 0.612 1.134 0.042 0.080 0.313 3.421 0.043 2.411 0.068 0.050 130 chr1 154703010 154725541 + 0 NA intron (NM_001204087, intron 3 of 8) intron (NM_001204087, intron 3 of 8) -113819 NM_001025107 103 Hs.12341 NM_001111 ENSG00000160710 ADAR ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136 adenosine deaminase, RNA specific protein-coding nan nan 2.349 0.284 1.009 0.647 2.253 0.099 0.079 0.389 0.192 0.262 4.004 0.055 0.099 0.680 0.966 0.378 0.662 2.265 nan 2.277 0.658 0.206 0.191 0.541 0.968 2.967 4.058 0.893 0.708 0.889 1.150 0.452 0.750 0.511 0.830 0.996 0.783 1.087 2.428 0.076 0.103 2.253 0.262 0.233 0.413 0.215 0.083 397 chr11 111241658 111277757 + 0 NA Intergenic Intergenic -9550 NM_006235 5450 Hs.654525 NM_006235 ENSG00000110777 POU2AF1 BOB1|OBF-1|OBF1|OCAB POU class 2 associating factor 1 protein-coding 0.737 1.174 0.857 0.265 2.662 1.462 0.206 0.112 0.041 0.186 0.207 0.729 1.335 0.043 0.108 2.129 nan 1.498 3.328 0.584 0.774 0.769 0.250 0.335 0.317 2.484 nan 0.722 0.523 0.437 0.243 0.947 1.574 0.855 1.028 0.192 0.419 0.857 0.512 1.434 0.136 0.249 0.157 0.206 0.729 0.531 0.222 0.896 0.051 64 chr1 40404541 40430028 + 0 NA Intergenic THE1D|LTR|ERVL-MaLR -3500 NR_109896 84879 Hs.655177 NM_032793 ENSG00000168389 MFSD2A MCPH15|MFSD2|NLS1 major facilitator superfamily domain containing 2A protein-coding 12.221 1.380 nan 5.473 0.978 0.572 9.449 0.250 0.158 0.343 0.279 2.175 1.735 0.183 0.121 0.648 0.885 0.676 1.293 3.435 2.422 1.077 0.263 0.626 0.684 0.843 nan nan 4.693 0.547 0.518 0.754 nan 0.227 0.179 0.658 1.040 1.612 1.136 1.557 0.882 0.038 8.110 9.449 2.175 0.247 0.266 0.237 0.243 830 chr17 78489653 78527574 + 0 NA Intergenic AluSq|SINE|Alu -10012 NM_020761 57521 Hs.133044 NM_020761 ENSG00000141564 RPTOR KOG1|Mip1 regulatory associated protein of MTOR complex 1 protein-coding 1.713 1.320 1.590 0.639 0.607 0.322 0.521 0.235 0.171 0.305 0.243 0.615 1.005 0.326 0.144 0.987 0.849 0.632 0.874 1.051 1.078 1.744 0.675 0.866 0.940 nan 1.354 1.531 2.169 1.651 1.218 0.729 1.036 0.404 0.602 2.345 5.619 nan 0.688 0.122 0.434 0.075 0.688 0.521 0.615 0.363 0.735 0.094 2.992 1078 chr2 174822620 174832572 + 0 NA intron (NM_001017371, intron 1 of 4) intron (NM_001017371, intron 1 of 4) 1351 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 5.608 4.377 5.158 4.723 6.480 3.475 4.810 3.239 0.418 2.674 1.308 6.986 10.313 3.886 0.081 4.570 4.670 5.196 7.629 6.917 6.709 4.279 2.295 10.676 10.896 3.481 4.352 13.539 18.950 6.933 6.997 3.439 6.358 3.327 2.982 5.666 5.875 1.523 0.914 5.493 2.769 1.066 2.614 4.810 6.986 1.966 1.378 2.189 2.255 357 chr11 64083582 64092230 + 0 NA intron (NM_181651, intron 2 of 4) L2c|LINE|L2 2346 NM_181651 25824 Hs.502823 NM_012094 ENSG00000126432 PRDX5 ACR1|AOEB166|B166|HEL-S-55|PLP|PMP20|PRDX6|PRXV|SBBI10|prx-V peroxiredoxin 5 protein-coding nan 2.181 3.020 3.263 3.370 1.688 3.594 1.547 0.224 1.569 0.948 2.547 7.432 3.819 0.132 4.915 7.701 3.991 5.617 5.097 4.764 4.298 2.030 5.859 6.260 2.687 3.862 4.379 5.516 2.957 2.952 4.160 4.954 2.352 2.852 1.439 2.795 1.730 1.052 2.874 2.549 0.469 1.605 3.594 2.547 1.474 2.017 1.494 0.942 539 chr13 72425118 72454466 + 0 NA intron (NM_080760, intron 2 of 8) CpG 1538 NM_080760 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding nan 1.135 1.405 0.370 2.034 1.114 3.677 0.063 0.049 0.321 0.212 0.375 2.999 0.122 0.078 0.900 1.296 0.458 0.826 4.728 4.470 nan 0.733 0.179 0.221 1.224 1.480 0.561 0.627 nan 7.642 0.314 0.548 3.120 2.508 3.824 nan 0.566 0.261 0.136 0.167 0.896 7.000 3.677 0.375 1.012 0.654 0.114 1.610 1236 chr22 42224872 42231085 + 0 NA Intergenic MIR|SINE|MIR -1105 NM_004599 6721 Hs.443258 NM_004599 ENSG00000198911 SREBF2 SREBP-2|SREBP2|bHLHd2 sterol regulatory element binding transcription factor 2 protein-coding 4.616 nan 3.017 3.745 7.008 3.238 8.168 3.023 0.489 2.578 1.057 9.666 5.433 2.268 0.176 5.192 5.188 6.889 9.635 5.951 4.600 5.503 4.579 9.124 9.633 4.683 5.673 4.255 7.852 nan 7.458 3.051 5.175 6.098 6.050 5.379 6.490 2.477 1.402 3.777 4.794 2.366 2.428 8.168 9.666 1.518 4.158 2.506 3.065 1482 chr6 34553025 34572432 + 0 NA intron (NM_024294, intron 4 of 4) AluJr|SINE|Alu -38618 NM_012391 25803 Hs.485158 NM_012391 ENSG00000124664 SPDEF PDEF|bA375E1.3 SAM pointed domain containing ETS transcription factor protein-coding nan 1.563 nan 1.969 0.439 0.271 0.488 0.292 0.108 0.774 0.383 1.279 2.874 0.107 0.117 0.544 0.625 0.396 nan nan 1.447 2.382 0.512 0.515 0.565 1.917 2.647 3.717 3.954 1.440 0.990 0.257 0.447 4.138 4.381 0.683 1.344 2.391 1.384 0.083 0.696 1.647 0.462 0.488 1.279 0.819 0.588 0.057 0.326 451 chr12 12711380 12716835 + 0 NA intron (NM_030640, intron 1 of 6) intron (NM_030640, intron 1 of 6) 1341 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 6.198 4.247 5.363 5.537 9.281 4.950 3.444 1.584 0.238 6.489 2.291 6.481 10.462 4.564 0.137 1.783 2.028 6.867 10.414 nan 6.128 8.411 6.914 12.746 13.616 6.379 8.215 6.343 12.895 1.718 1.379 2.474 4.415 6.327 6.253 3.161 3.086 3.923 2.174 2.373 5.074 1.045 2.446 3.444 6.481 0.413 1.711 1.200 0.736 118 chr1 145469445 145475328 + 0 NA 5' UTR (NM_001039888, exon 3 of 4) 5' UTR (NM_001039888, exon 3 of 4) 1878 NM_001039888 284615 Hs.620591 NM_001039888 ENSG00000272031 ANKRD34A ANKRD34 ankyrin repeat domain 34A protein-coding 3.447 nan 2.668 1.625 1.217 0.593 2.085 1.983 0.138 1.452 0.791 1.867 15.300 3.181 0.113 2.452 4.219 1.703 2.546 4.943 4.692 5.750 1.311 0.975 1.195 2.386 3.286 2.879 3.500 2.502 2.077 2.277 3.843 1.344 1.531 3.507 5.644 2.688 1.394 1.729 7.305 0.193 0.743 2.085 1.867 0.954 4.333 1.980 1.271 348 chr11 61591931 61604416 + 0 NA intron (NM_004265, intron 1 of 11) intron (NM_004265, intron 1 of 11) 2668 NM_004265 9415 Hs.502745 NM_004265 ENSG00000134824 FADS2 D6D|DES6|FADSD6|LLCDL2|SLL0262|TU13 fatty acid desaturase 2 protein-coding nan 2.539 2.130 3.826 9.409 5.253 3.254 2.436 0.338 2.394 1.498 4.223 5.362 2.757 0.158 6.242 8.211 2.895 4.050 12.748 10.928 4.691 1.934 3.423 3.721 2.994 3.653 5.122 6.446 4.067 4.722 4.124 8.678 3.110 2.645 2.329 3.509 2.401 1.465 6.291 3.667 1.217 1.704 3.254 4.223 1.363 1.713 3.927 1.640 1697 chr8 145128182 145139118 + 0 NA exon (NM_019037, exon 1 of 3) exon (NM_019037, exon 1 of 3) 128 NM_019037 54512 Hs.632041 NM_019037 ENSG00000178896 EXOSC4 RRP41|RRP41A|Rrp41p|SKI6|Ski6p|hRrp41p|p12A exosome component 4 protein-coding 4.171 2.082 nan 3.457 3.445 1.684 2.312 1.766 0.385 0.774 0.375 4.446 6.968 1.380 0.084 3.479 3.736 5.533 5.392 nan 5.275 nan 1.230 7.564 7.598 2.139 2.895 2.322 3.184 2.438 2.910 2.547 4.512 2.057 2.109 2.151 3.267 1.982 1.087 1.627 2.273 0.324 0.807 2.312 4.446 0.827 3.962 1.023 0.793 461 chr12 29385919 29400433 + 0 NA intron (NM_001271784, intron 1 of 10) LTR85c|LTR|Gypsy? 16620 NM_001271784 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding nan nan nan 0.270 0.200 0.121 0.985 0.227 0.056 0.086 0.123 0.058 0.296 0.097 0.130 0.227 0.166 0.189 0.252 0.428 0.471 0.170 0.093 0.477 0.454 3.617 3.689 0.169 0.192 0.777 0.645 0.194 0.206 0.038 0.035 0.657 2.727 0.247 0.342 0.066 0.098 0.082 0.985 0.058 0.209 0.048 0.051 0.433 491 chr12 66205913 66359179 + 0 NA intron (NM_001300918, intron 3 of 4) AluY|SINE|Alu -6599 NM_001292024 100129940 Hs.685856 NM_001292023 ENSG00000197301 LOC100129940 - uncharacterized LOC100129940 protein-coding 0.671 0.575 0.568 0.117 0.184 0.083 0.093 0.299 0.085 0.072 0.111 0.045 0.259 6.566 0.187 0.284 0.225 1.013 2.789 0.359 nan 0.122 0.067 0.145 0.136 0.187 0.299 0.317 0.371 0.469 0.313 0.169 0.324 0.037 0.045 0.527 0.975 0.231 0.370 0.013 0.061 0.014 0.019 0.093 0.045 0.015 0.030 0.091 0.340 1750 chr9 124940842 124965232 + 0 NA intron (NM_198469, intron 4 of 4) intron (NM_198469, intron 4 of 4) 30850 NM_001286828 254956 Hs.71428 NM_198469 ENSG00000185681 MORN5 C9orf113|C9orf18 MORN repeat containing 5 protein-coding nan nan 0.643 0.716 4.840 2.650 0.215 0.092 0.093 0.168 0.177 0.952 nan 0.058 0.100 0.300 0.583 0.227 0.345 1.510 1.526 0.933 0.450 0.446 0.442 0.109 nan 0.471 0.671 0.613 0.454 0.258 0.310 0.303 0.261 0.177 0.259 nan 1.149 2.671 1.110 0.027 0.107 0.215 0.952 0.064 0.403 0.049 0.030 1682 chr8 128734377 128756397 + 0 NA intron (NR_117101, intron 1 of 1) intron (NR_117101, intron 1 of 1) 826 NR_117101 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility candidate 11 (non-protein coding) ncRNA 12.845 6.746 12.509 1.038 1.907 1.035 0.076 1.344 0.204 2.535 1.308 0.120 nan 1.339 0.124 9.004 10.657 2.952 4.798 1.017 0.847 3.075 1.050 nan nan 13.394 18.233 3.217 3.239 52.371 38.956 0.249 0.447 0.620 0.578 19.260 29.704 0.471 0.368 0.416 0.186 0.169 0.180 0.076 0.120 8.863 1.458 0.112 20.977 255 chr10 8066608 8096536 + 0 NA Intergenic Intergenic 12882 NR_104329 399717 Hs.158992 NM_207423 ENSG00000197308 GATA3-AS1 - GATA3 antisense RNA 1 ncRNA 0.344 0.438 0.440 0.108 0.191 0.129 0.094 0.133 0.075 0.152 0.107 0.068 0.233 0.083 0.073 0.262 0.183 0.471 0.750 0.162 0.228 2.795 0.965 0.083 0.072 0.115 0.244 0.095 0.112 0.233 0.100 0.139 0.125 0.063 0.072 0.062 0.166 0.197 0.258 0.024 0.021 0.013 0.005 0.094 0.068 0.003 0.048 0.036 0.038 81 chr1 54035730 54040224 + 0 NA intron (NM_147193, intron 3 of 9) MIRb|SINE|MIR 112905 NM_033067 63948 Hs.131654 NM_033067 ENSG00000143006 DMRTB1 - DMRT like family B with proline rich C-terminal 1 protein-coding 1.276 1.003 1.920 0.272 0.336 0.178 1.590 0.376 0.071 0.081 0.130 0.134 2.817 0.049 0.134 0.831 1.360 10.801 12.692 1.208 1.124 0.781 0.341 0.879 0.774 3.659 3.678 1.812 2.187 1.446 1.229 1.115 2.109 0.381 0.177 0.374 nan 0.385 0.454 0.719 0.546 0.086 0.158 1.590 0.134 0.808 0.127 1.517 0.136 633 chr14 105957511 105969235 + 0 NA intron (NM_001134875, intron 5 of 7) intron (NM_001134875, intron 5 of 7) 5787 NM_001134875 283643 Hs.720306 NM_173608 ENSG00000185347 C14orf80 - chromosome 14 open reading frame 80 protein-coding 2.505 0.621 9.597 0.517 0.602 0.175 0.918 0.280 0.136 0.253 0.170 0.539 0.991 0.652 0.079 2.646 4.251 0.783 1.223 1.370 1.087 1.274 0.650 0.711 0.668 0.789 1.248 0.607 1.107 1.372 1.229 0.589 0.730 0.709 0.664 0.566 0.580 0.123 0.120 0.484 0.485 0.179 0.436 0.918 0.539 0.526 0.250 0.076 0.104 856 chr18 34970776 34985376 + 0 NA intron (NM_001025087, intron 2 of 12) intron (NM_001025087, intron 2 of 12) 68391 NR_132967 106635546 NR_132967 SNORA111 - small nucleolar RNA, H/ACA box 111 snoRNA nan 0.983 0.808 0.646 0.598 0.308 1.016 0.061 0.493 0.357 0.726 1.024 0.059 0.048 1.172 2.344 0.185 0.458 1.369 1.304 2.462 1.172 0.139 0.148 1.296 1.667 nan 1.904 2.479 2.918 0.244 0.371 2.160 1.614 1.017 0.895 3.483 2.383 1.922 0.328 0.444 0.390 1.016 0.726 0.485 0.093 0.054 0.239 645 chr15 43799821 43810954 + 0 NA Intergenic AluSp|SINE|Alu -2680 NM_005657 7158 Hs.440968 NM_005657 ENSG00000067369 TP53BP1 53BP1|TDRD30|TP53|p202|p53BP1 tumor protein p53 binding protein 1 protein-coding 2.179 1.235 nan 0.807 1.448 0.782 4.292 1.417 0.217 0.822 0.566 1.603 3.093 0.467 0.090 1.229 1.888 0.660 0.844 2.512 2.175 3.877 0.876 0.556 0.676 1.694 nan 2.396 3.436 4.556 4.247 1.006 1.166 1.803 2.417 2.879 4.006 2.175 1.243 0.728 2.526 0.445 0.576 4.292 1.603 1.511 1.780 0.825 0.904 1032 chr2 45015155 45072345 + 0 NA Intergenic Intergenic 124896 NR_103785 100506108 Hs.503113 NR_103785 ENSG00000236502 SIX3-AS1 SIX3OS SIX3 antisense RNA 1 ncRNA 1.423 nan 1.552 0.140 0.814 0.395 0.449 0.087 0.051 0.183 0.161 0.544 0.326 0.055 0.106 0.284 0.189 0.205 0.298 nan 0.625 0.856 0.307 0.409 0.399 0.212 0.397 0.370 0.467 0.593 0.391 0.157 0.202 0.501 0.523 1.346 nan nan 0.622 0.063 0.196 0.165 0.055 0.449 0.544 0.036 0.060 0.053 2.025 1158 chr20 43319872 43332425 + 0 NA Intergenic Intergenic -17337 NM_001323369 8839 Hs.592145 NM_003881 ENSG00000064205 WISP2 CCN5|CT58|CTGF-L WNT1 inducible signaling pathway protein 2 protein-coding nan nan 0.896 0.580 0.387 0.205 0.303 0.895 0.155 0.100 0.097 0.228 0.541 0.096 0.087 0.696 0.726 0.218 0.350 0.356 0.363 nan 0.230 0.344 0.373 0.664 1.114 0.436 0.598 nan 4.616 0.378 0.548 0.166 0.171 1.853 4.719 0.448 0.404 0.114 0.106 0.102 0.303 0.228 0.140 0.121 0.229 1.633 938 chr19 18389384 18405927 + 0 NA Intergenic L2b|LINE|L2 4768 NR_036155 100422833 NR_036155 ENSG00000267959 MIR3188 mir-3188 microRNA 3188 ncRNA 4.921 2.900 4.867 3.094 4.028 2.035 3.131 1.808 0.359 2.191 0.873 4.008 4.646 3.852 0.172 2.351 3.787 2.865 4.401 6.751 6.054 5.965 3.384 8.186 8.279 2.799 3.654 5.703 7.167 5.697 6.520 1.264 2.001 4.933 3.622 6.480 7.764 2.383 1.501 3.050 2.241 1.042 1.530 3.131 4.008 0.904 2.416 0.891 2.755 859 chr18 35139177 35160043 + 0 NA Intergenic Intergenic -3610 NM_001025087 56853 Hs.435976 NM_020180 ENSG00000101489 CELF4 BRUNOL4|CELF-4 CUGBP, Elav-like family member 4 protein-coding nan 2.041 1.089 2.168 1.983 1.109 4.076 0.022 0.023 0.916 0.701 3.626 3.462 0.089 0.042 1.846 2.300 0.246 0.351 6.205 5.707 4.412 1.680 0.128 0.141 1.460 1.825 nan 3.659 1.743 2.043 0.482 0.698 3.867 3.595 0.631 0.923 4.897 2.453 6.328 1.402 1.215 1.024 4.076 3.626 0.650 1.150 0.214 0.302 449 chr12 12096563 12110286 + 0 NA Intergenic Intergenic -120454 NM_138723 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 1.034 0.943 1.580 2.231 0.531 0.176 0.128 0.049 0.059 0.782 0.268 0.244 1.608 0.024 0.117 1.502 2.182 0.421 0.593 nan 1.044 4.383 0.964 0.447 0.594 0.367 0.628 6.565 6.658 0.930 0.766 1.180 1.728 0.198 0.201 0.225 0.412 2.076 0.934 1.621 0.105 0.021 0.018 0.128 0.244 0.028 0.451 0.962 0.080 652 chr15 63367686 63373290 + 0 NA Intergenic Intergenic 29852 NM_001018008 7168 Hs.133892 NM_000366 ENSG00000140416 TPM1 C15orf13|CMD1Y|CMH3|HEL-S-265|HTM-alpha|LVNC9|TMSA tropomyosin 1 (alpha) protein-coding 1.095 1.206 nan 0.034 0.284 0.199 0.412 1.071 0.057 0.140 0.111 0.084 0.491 0.014 0.065 0.490 0.305 8.484 1.467 0.347 0.322 nan 0.195 1.011 1.085 0.395 0.913 0.189 0.317 0.804 0.583 0.552 1.097 0.183 0.202 0.525 1.540 0.348 0.312 0.065 0.095 0.051 0.056 0.412 0.084 0.191 0.339 0.248 0.218 51 chr1 28989356 28996831 + 0 NA Intergenic AluSc8|SINE|Alu -2147 NM_024482 10691 Hs.632373 NM_006582 ENSG00000162419 GMEB1 P96PIF|PIF96 glucocorticoid modulatory element binding protein 1 protein-coding 4.171 2.545 nan 4.444 4.017 2.141 3.319 1.542 0.581 1.445 0.814 2.240 5.701 3.329 0.180 3.258 3.887 3.389 5.207 7.783 7.849 3.762 1.801 7.425 7.667 6.756 7.784 3.820 5.497 5.643 5.211 2.407 4.040 1.861 2.111 3.842 7.114 2.539 1.331 3.803 2.564 0.448 1.403 3.319 2.240 0.919 1.545 1.313 2.433 1532 chr6 162147503 162159763 + 0 NA intron (NM_013987, intron 6 of 10) intron (NM_013987, intron 6 of 10) 261624 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 0.782 nan 0.656 0.575 0.331 0.183 0.386 0.127 0.104 0.205 0.122 0.390 0.255 0.036 0.130 0.443 0.316 0.181 0.218 0.585 0.635 5.934 2.253 0.200 0.179 0.077 0.137 1.328 0.444 nan 0.182 0.129 0.215 1.660 1.684 0.111 0.222 0.370 0.331 0.013 0.051 0.274 0.007 0.386 0.390 0.050 0.018 0.022 611 chr14 81420784 81443808 + 0 NA intron (NM_001018036, intron 1 of 8) intron (NM_001018036, intron 1 of 8) 10427 NM_000369 7253 Hs.160411 NM_000369 ENSG00000165409 TSHR CHNG1|LGR3|hTSHR-I thyroid stimulating hormone receptor protein-coding nan 0.774 1.638 0.142 1.224 0.655 0.290 2.037 0.293 0.265 0.243 0.140 0.675 0.099 0.113 0.293 0.337 0.240 0.376 1.266 1.220 0.191 0.071 0.586 0.572 0.887 1.457 0.440 0.479 2.822 2.349 0.156 0.259 4.374 6.239 0.715 1.473 2.182 1.336 0.387 0.298 1.824 0.180 0.290 0.140 1.276 0.096 0.047 0.257 714 chr16 75086891 75146054 + 0 NA intron (NM_032268, intron 1 of 4) AluJb|SINE|Alu 34198 NM_194436 197257 Hs.380929 NM_153486 ENSG00000166816 LDHD DLD lactate dehydrogenase D protein-coding 1.018 0.937 nan 1.109 0.601 0.335 0.473 0.287 0.082 0.157 0.121 0.671 0.957 0.104 0.088 0.349 0.453 0.256 0.469 0.814 0.825 0.808 0.289 0.610 0.643 0.645 1.025 3.826 4.197 0.909 0.777 0.176 0.271 0.121 0.109 0.317 0.699 1.769 1.020 0.716 0.735 0.018 0.061 0.473 0.671 0.127 1.225 0.057 0.215 1573 chr7 36976869 37012142 + 0 NA intron (NM_001206482, intron 16 of 21) MER5A|DNA|hAT-Charlie 30212 NM_001039459 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 1.640 0.986 2.159 0.534 0.529 0.306 0.269 0.109 0.096 0.696 0.418 1.986 0.863 0.068 0.141 1.136 1.438 0.285 0.305 1.243 nan 1.728 0.429 0.840 0.982 0.470 nan nan nan 1.028 0.840 0.586 0.754 2.468 4.446 0.376 nan 1.653 0.862 0.026 0.408 0.862 0.419 0.269 1.986 0.234 0.784 0.547 0.414 943 chr19 30715781 30723809 + 0 NA Intergenic CpG -143505 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 5.493 0.388 0.522 0.065 3.283 1.887 3.153 0.057 0.160 0.041 0.052 0.831 0.444 0.498 0.075 0.247 0.267 0.271 0.453 0.198 0.181 0.144 0.082 0.171 0.152 3.921 6.483 0.101 0.160 nan 0.091 0.668 0.658 0.073 0.100 0.334 0.991 0.738 0.503 3.415 0.055 0.376 3.153 0.831 1.862 0.161 0.062 199 chr1 203140759 203157030 + 0 NA exon (NM_001276, exon 9 of 10) exon (NM_001276, exon 9 of 10) -3952 NM_004997 4608 Hs.927 NM_004997 ENSG00000133055 MYBPH - myosin binding protein H protein-coding 1.524 1.017 1.448 0.152 1.952 0.874 0.269 0.121 0.110 0.463 0.156 2.777 0.554 0.053 0.076 0.648 0.872 0.506 0.704 1.563 2.346 1.449 0.408 nan nan 0.353 0.612 0.743 0.728 0.524 0.304 0.214 0.282 0.134 0.199 1.574 5.327 1.069 0.623 0.232 0.324 0.024 0.419 0.269 2.777 0.142 0.354 0.012 0.676 326 chr11 34605938 34613383 + 0 NA Intergenic Intergenic -32928 NM_012153 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 0.651 1.311 nan 0.189 0.596 0.324 0.379 0.201 0.108 0.183 0.184 1.084 1.523 0.014 0.126 1.235 1.279 6.985 6.163 0.401 0.724 2.934 0.797 0.662 0.732 0.344 0.550 0.348 0.322 0.469 0.173 0.573 0.721 0.185 0.237 0.135 nan 0.717 0.622 0.105 0.116 0.032 0.379 1.084 0.017 0.031 0.096 0.016 1702 chr8 145732236 145736158 + 0 NA promoter-TSS (NM_138431) promoter-TSS (NM_138431) -222 NM_138431 113655 Hs.7678 NM_138431 ENSG00000167700 MFSD3 - major facilitator superfamily domain containing 3 protein-coding 6.873 3.262 nan 9.012 7.815 4.190 3.479 1.356 0.168 1.555 0.906 9.328 8.661 1.998 0.053 6.717 7.548 4.326 6.719 nan 10.634 nan 2.651 11.903 12.900 2.466 3.212 6.508 8.576 5.523 7.238 9.987 12.589 6.739 5.448 6.089 6.518 4.441 2.046 6.528 7.553 1.445 3.330 3.479 9.328 1.665 4.850 3.948 2.200 1234 chr22 41089837 41143908 + 0 NA Intergenic MLT1C|LTR|ERVL-MaLR 41690 NM_005297 2847 Hs.248122 NM_005297 ENSG00000128285 MCHR1 GPR24|MCH-1R|MCH1R|SLC-1|SLC1 melanin concentrating hormone receptor 1 protein-coding 1.084 nan 1.020 0.720 2.544 1.250 0.466 0.184 0.139 0.360 0.285 0.870 1.838 0.124 0.121 0.286 0.244 0.266 0.776 0.740 0.689 1.895 0.539 0.172 0.205 0.892 nan 1.070 1.441 nan 0.727 0.201 0.236 2.278 3.207 0.492 1.154 0.872 0.461 0.842 0.749 1.127 0.034 0.466 0.870 0.433 0.111 0.057 0.328 623 chr14 100787750 100817450 + 0 NA intron (NM_173701, intron 10 of 10) AluY|SINE|Alu 12921 NM_207117 283600 Hs.108268 NM_207117 ENSG00000140107 SLC25A47 C14orf68|HDMCP|HMFN1655 solute carrier family 25 member 47 protein-coding 1.776 1.164 0.917 1.608 0.550 0.285 0.807 0.259 0.162 0.567 0.426 0.312 0.657 0.091 0.084 0.411 0.527 0.289 0.691 1.922 1.834 2.665 0.708 0.200 0.235 0.335 0.627 2.952 3.209 1.250 1.046 0.318 0.337 1.321 0.870 0.599 1.329 2.793 1.425 0.599 2.850 0.259 0.271 0.807 0.312 0.545 0.967 0.036 0.505 439 chr12 7124351 7127169 + 0 NA promoter-TSS (NM_005768) promoter-TSS (NM_005768) 82 NM_005768 10162 Hs.655248 NM_005768 ENSG00000111684 LPCAT3 C3F|LPCAT|LPLAT 5|LPSAT|MBOAT5|OACT5|nessy lysophosphatidylcholine acyltransferase 3 protein-coding 3.838 nan 4.068 7.753 2.495 1.287 1.412 0.826 0.057 1.664 1.560 2.658 9.059 4.127 0.084 1.344 2.361 2.398 3.952 nan 6.409 7.516 3.050 10.347 10.592 2.926 3.437 3.273 6.630 3.923 4.061 1.940 3.736 3.011 1.643 3.864 5.571 1.335 0.673 2.979 2.281 0.943 3.358 1.412 2.658 9.218 1.511 1.736 1.614 233 chr1 235322220 235334448 + 0 NA Intergenic MER103C|DNA|hAT-Charlie -3403 NR_027762 23029 Hs.535224 NM_015014 ENSG00000188739 RBM34 - RNA binding motif protein 34 protein-coding 2.082 2.024 1.799 1.334 1.216 0.540 1.080 0.989 0.153 0.704 0.527 1.117 2.509 1.120 0.175 1.895 1.963 5.172 10.263 2.113 2.190 nan 0.845 3.014 3.216 1.158 1.732 nan 2.605 1.453 0.965 0.604 0.939 1.055 1.529 1.291 1.822 nan 0.706 0.705 0.425 0.202 0.357 1.080 1.117 0.135 0.688 0.211 0.363 1645 chr8 59569540 59573468 + 0 NA intron (NM_003580, intron 1 of 30) intron (NM_003580, intron 1 of 30) 462 NM_001144772 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 11.120 6.373 5.522 3.261 5.730 3.103 7.228 2.740 0.205 3.105 1.912 7.311 9.836 5.459 0.130 9.446 11.657 9.014 13.818 19.087 18.428 10.084 5.754 8.583 8.082 5.838 nan 6.239 9.662 10.900 11.949 6.131 11.150 10.724 7.610 11.360 7.430 5.937 3.916 4.159 4.581 1.434 5.372 7.228 7.311 0.886 5.268 2.325 5.171 1463 chr6 20400316 20410256 + 0 NA intron (NM_001243076, intron 1 of 6) intron (NM_001243076, intron 1 of 6) 1376 NM_001243076 1871 Hs.269408 NM_001949 ENSG00000112242 E2F3 E2F-3 E2F transcription factor 3 protein-coding 6.320 2.433 nan 4.042 4.215 2.421 4.258 2.888 0.342 2.090 0.715 6.982 nan 3.125 0.094 6.311 4.846 5.783 nan 7.340 4.295 nan 2.385 11.982 12.573 4.945 6.598 5.766 8.882 5.870 7.170 2.065 3.922 5.873 5.099 9.785 7.965 2.222 1.531 2.904 3.083 1.168 2.562 4.258 6.982 1.299 2.199 1.304 3.793 1361 chr5 1237144 1259435 + 0 NA Intergenic Intergenic 22819 NM_182632 348932 Hs.213284 NM_182632 ENSG00000164363 SLC6A18 Xtrp2 solute carrier family 6 member 18 protein-coding 0.469 0.773 1.116 0.243 0.413 0.267 0.322 0.124 0.108 0.310 0.137 0.683 0.634 0.097 0.095 3.275 4.412 0.090 nan 1.614 1.324 1.540 0.538 0.062 0.059 0.209 0.508 nan 0.969 nan 0.542 0.516 0.659 0.303 0.296 0.133 0.124 1.580 nan 0.366 1.903 0.029 0.079 0.322 0.683 0.157 0.198 0.244 0.033 1106 chr2 216971851 216983715 + 0 NA exon (NM_021141, exon 2 of 21) exon (NM_021141, exon 2 of 21) 3763 NM_021141 7520 Hs.388739 NM_021141 ENSG00000079246 XRCC5 KARP-1|KARP1|KU80|KUB2|Ku86|NFIV X-ray repair cross complementing 5 protein-coding nan 2.120 nan 2.825 3.559 1.689 2.686 1.712 0.095 1.336 0.668 2.988 5.654 2.195 0.103 5.181 4.041 4.784 6.777 4.813 5.412 4.515 2.861 8.494 9.866 3.891 4.810 6.626 nan 5.953 5.029 2.903 3.453 2.157 3.199 5.636 7.169 2.530 1.163 1.672 1.056 0.313 1.145 2.686 2.988 0.879 1.055 1.012 1.855 514 chr12 122580622 122611297 + 0 NA intron (NM_014938, intron 1 of 16) intron (NM_014938, intron 1 of 16) -56307 NM_152759 254050 Hs.374856 NM_152759 ENSG00000158113 LRRC43 - leucine rich repeat containing 43 protein-coding 1.340 2.047 1.227 1.277 2.699 1.415 0.479 0.150 0.162 0.889 0.562 1.520 2.339 0.149 0.151 1.996 2.345 0.450 0.838 1.630 1.730 nan 0.819 0.916 0.992 1.158 1.465 3.105 4.076 0.719 0.618 3.994 4.523 1.695 2.228 0.295 0.562 2.588 1.275 2.317 2.551 0.428 0.350 0.479 1.520 0.300 0.312 5.151 0.206 1447 chr6 1756342 1769121 + 0 NA intron (NM_001500, intron 7 of 10) intron (NM_001500, intron 7 of 10) 152050 NM_001453 2296 Hs.348883 NM_001453 ENSG00000054598 FOXC1 ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 1.186 1.387 1.255 1.356 1.989 1.155 0.376 0.759 0.101 0.586 0.342 0.439 0.328 0.051 0.095 0.819 0.767 4.090 8.647 0.500 0.563 1.333 0.283 0.527 0.593 0.459 0.778 2.424 2.104 0.341 0.275 0.485 0.671 0.313 0.477 0.477 1.389 1.408 0.849 0.247 0.702 0.291 0.376 0.439 0.038 0.412 0.164 0.272 1744 chr9 100565059 100573489 + 0 NA Intergenic MIR|SINE|MIR -46263 NM_004473 2304 Hs.159234 NM_004473 ENSG00000178919 FOXE1 FKHL15|FOXE2|HFKH4|HFKL5|NMTC4|TITF2|TTF-2|TTF2 forkhead box E1 protein-coding 1.123 1.983 1.621 2.198 1.024 0.552 2.607 0.144 0.119 0.909 0.465 0.309 2.769 0.310 0.059 1.086 1.382 1.259 4.045 2.292 1.979 5.708 2.816 1.051 1.219 0.442 0.738 1.879 nan 1.860 2.215 0.701 0.684 7.027 6.887 0.387 0.527 nan 0.929 0.334 0.697 2.204 0.386 2.607 0.309 0.687 0.188 0.211 0.029 153 chr1 159194870 159203901 + 0 NA Intergenic Intergenic 24336 NM_001122951 2532 Hs.153381 NM_002036 ENSG00000213088 ACKR1 CCBP1|CD234|DARC|DARC/ACKR1|Dfy|FY|GPD|GpFy|WBCQ1 atypical chemokine receptor 1 (Duffy blood group) protein-coding nan nan 1.975 0.069 0.259 0.125 0.084 0.098 0.073 0.053 0.297 0.071 0.278 0.085 0.127 1.256 0.998 13.499 9.451 0.242 nan 0.118 0.073 0.112 0.117 0.224 0.414 0.339 0.331 0.397 0.300 3.290 5.372 0.066 0.113 0.187 0.512 0.432 0.456 0.771 0.135 0.011 0.053 0.084 0.071 0.011 0.022 3.394 0.149 1331 chr4 40303120 40339913 + 0 NA intron (NR_121640, intron 1 of 2) AluSg4|SINE|Alu 3014 NR_121640 101060498 Hs.351492 NR_121640 ENSG00000249241 LOC101060498 - uncharacterized LOC101060498 ncRNA 1.123 nan nan 0.816 1.867 0.977 5.105 0.929 0.184 0.638 0.338 0.895 1.446 0.432 0.099 0.812 1.217 1.360 3.351 0.573 0.694 3.090 1.874 0.678 0.707 0.497 0.818 1.170 1.519 0.709 0.428 0.522 0.901 0.801 1.272 0.377 0.950 2.565 1.681 0.420 0.415 0.115 0.745 5.105 0.895 0.045 0.228 0.420 0.371 1793 chrX 136435382 136454627 + 0 NA Intergenic Intergenic -203282 NM_001330661 7547 Hs.111227 NM_003413 ENSG00000156925 ZIC3 HTX|HTX1|VACTERLX|ZNF203 Zic family member 3 protein-coding 0.455 0.890 1.122 0.032 1.027 0.482 1.264 0.024 0.033 0.238 0.115 0.012 0.229 0.011 0.037 0.251 0.114 0.160 0.288 0.119 0.142 5.856 3.035 0.121 0.117 0.117 0.200 0.106 0.095 0.293 0.121 0.073 0.095 0.024 0.058 0.131 0.245 1.361 0.772 0.023 0.046 0.005 0.016 1.264 0.012 0.025 0.047 0.032 866 chr18 42471331 42486429 + 0 NA intron (NM_015559, intron 3 of 5) intron (NM_015559, intron 3 of 5) 71251 NR_036203 100422829 NR_036203 ENSG00000265957 MIR4319 - microRNA 4319 ncRNA nan 1.128 2.232 2.242 0.911 0.436 0.862 0.125 0.074 0.954 0.651 2.677 2.274 0.014 0.075 0.382 0.410 0.244 0.473 3.901 4.161 4.265 1.747 0.065 0.065 0.693 0.891 2.229 3.043 0.927 0.833 0.100 0.321 2.338 2.477 0.190 nan 5.168 2.797 1.096 0.259 0.777 0.100 0.862 2.677 0.309 1.116 0.026 0.155 638 chr15 31629012 31659691 + 0 NA intron (NM_001302461, intron 1 of 1) intron (NM_001302461, intron 1 of 1) 25293 NM_015995 51621 Hs.376443 NM_015995 ENSG00000169926 KLF13 BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1 Kruppel like factor 13 protein-coding 1.155 nan nan 1.322 1.175 0.606 0.803 1.210 0.200 1.292 0.800 4.081 2.759 0.142 0.055 1.891 3.636 0.404 0.819 4.456 5.020 2.019 0.523 0.465 0.505 1.041 1.393 2.390 2.884 2.164 2.359 1.812 3.230 1.588 1.494 0.377 0.512 0.688 0.440 2.046 1.758 0.409 1.213 0.803 4.081 1.007 0.677 3.366 0.115 808 chr17 62499092 62505028 + 0 NA promoter-TSS (NM_001320597) promoter-TSS (NM_001320597) 14 NM_001320597 1655 Hs.279806 NM_004396 ENSG00000108654 DDX5 G17P1|HLR1|HUMP68|p68 DEAD-box helicase 5 protein-coding 7.494 nan 5.106 6.987 8.212 4.819 4.431 4.608 0.517 3.971 1.722 5.670 14.023 5.956 0.167 9.537 10.470 8.160 10.955 12.071 10.897 8.452 5.154 24.737 25.025 4.246 nan 9.935 14.405 11.833 13.731 4.470 8.124 7.483 7.191 7.221 7.312 3.611 2.031 2.035 4.407 1.522 3.169 4.431 5.670 1.213 3.046 2.391 2.212 1001 chr19 59082969 59088320 + 0 NA promoter-TSS (NM_003422) promoter-TSS (NM_003422) -702 NM_001267033 7593 Hs.399810 NM_003422 ENSG00000099326 MZF1 MZF-1|MZF1B|ZFP98|ZNF42|ZSCAN6 myeloid zinc finger 1 protein-coding 5.251 3.368 4.421 5.385 9.713 5.116 4.821 2.537 0.464 2.222 0.820 4.370 10.193 5.421 0.284 7.007 8.718 3.257 5.790 9.166 8.283 13.462 9.256 6.310 6.971 6.208 8.256 9.844 13.157 8.292 8.676 2.278 3.708 7.023 6.198 7.307 8.615 5.582 3.420 4.561 6.665 1.296 3.109 4.821 4.370 2.110 2.707 1.637 2.411 1772 chr9 136547129 136581918 + 0 NA intron (NM_001134707, intron 13 of 20) AluSp|SINE|Alu 38956 NM_001134707 1757 Hs.198003 NM_007101 ENSG00000123453 SARDH BPR-2|DMGDHL1|SAR|SARD|SDH sarcosine dehydrogenase protein-coding nan 0.546 1.292 0.430 0.722 0.378 0.358 0.084 0.041 0.250 0.168 0.971 0.928 0.051 0.069 0.221 0.388 0.129 0.184 5.881 5.625 nan 0.240 0.143 0.141 0.065 0.151 2.166 2.544 3.798 5.468 0.242 0.265 0.282 0.304 0.372 0.858 0.884 0.550 2.494 0.707 0.082 0.050 0.358 0.971 0.268 0.753 0.051 0.139 1763 chr9 133402891 133427442 + 0 NA Intergenic Charlie15a|DNA|hAT-Charlie 39715 NR_027440 100272217 Hs.601255 NR_027440 LOC100272217 - uncharacterized LOC100272217 ncRNA nan 0.783 0.687 0.653 0.822 0.450 1.392 0.261 0.211 0.166 0.117 3.712 0.999 0.036 0.099 0.160 0.146 0.131 0.208 8.866 8.504 nan 0.172 0.134 0.143 1.027 1.043 1.903 2.783 1.851 1.859 0.193 0.173 0.314 0.406 0.333 0.688 0.770 0.634 3.772 2.342 0.090 0.042 1.392 3.712 0.165 0.132 0.020 0.150 1745 chr9 109622069 109633749 + 0 NA intron (NM_021224, intron 1 of 12) intron (NM_021224, intron 1 of 12) 2531 NM_021224 58499 Hs.370379 NM_021224 ENSG00000148143 ZNF462 Zfp462 zinc finger protein 462 protein-coding 3.437 2.028 2.084 2.864 2.490 1.497 2.913 2.279 0.192 1.502 0.909 2.838 8.605 0.796 0.058 0.225 0.225 1.928 3.685 8.470 6.886 1.731 0.529 0.687 0.677 2.052 2.866 2.552 nan 7.121 8.380 1.016 2.210 2.995 2.438 3.017 4.122 nan 1.454 1.616 1.793 1.079 1.120 2.913 2.838 1.675 0.968 0.763 1.523 688 chr16 4343330 4378837 + 0 NA Intergenic Intergenic -3679 NM_001318918 84662 Hs.592087 NM_032575 ENSG00000126603 GLIS2 NKL|NPHP7 GLIS family zinc finger 2 protein-coding 1.234 nan 1.994 1.122 1.122 0.678 0.980 0.721 0.340 0.309 0.252 1.599 2.621 2.052 0.083 1.031 1.997 0.320 0.598 2.014 1.789 nan 0.651 1.969 1.835 0.532 nan 1.432 2.214 1.056 0.855 0.536 1.079 0.406 0.412 0.843 1.395 1.020 0.581 1.659 1.055 0.092 0.338 0.980 1.599 0.120 0.431 0.505 0.359 817 chr17 73147342 73151597 + 0 NA promoter-TSS (NM_001288610) promoter-TSS (NM_001288610) -81 NM_001288610 51155 Hs.532803 NM_016185 ENSG00000189159 HN1 ARM2|HN1A hematological and neurological expressed 1 protein-coding 8.787 3.875 4.355 5.053 6.051 3.450 4.139 2.259 0.457 5.508 2.283 5.205 14.247 4.340 0.250 8.810 10.717 4.793 6.171 10.522 7.302 8.788 2.448 9.554 10.455 nan 9.050 6.258 12.527 14.936 20.523 3.816 8.047 10.013 7.839 7.818 7.445 nan 3.315 3.950 4.470 1.538 3.369 4.139 5.205 1.364 4.753 2.308 2.016 133 chr1 154966174 154996160 + 0 NA intron (NR_049765, intron 2 of 3) intron (NR_049765, intron 2 of 3) 6061 NM_001256455 51043 Hs.729279 NM_001252406 ENSG00000160685 ZBTB7B CKROX|THPOK|ZBTB15|ZFP-67|ZFP67|ZNF857B|c-KROX|hcKROX zinc finger and BTB domain containing 7B protein-coding nan nan 4.032 2.431 2.498 1.320 3.519 2.312 0.350 1.620 0.685 1.972 6.750 2.584 0.122 3.152 3.853 2.178 3.108 2.972 nan 2.563 0.816 3.477 3.702 1.919 2.606 4.204 4.894 2.409 1.989 3.468 5.397 1.968 1.947 2.363 4.751 1.312 0.704 1.603 3.410 0.610 1.587 3.519 1.972 1.143 2.472 2.856 1.667 515 chr12 124872734 124914598 + 0 NA intron (NM_001077261, intron 15 of 47) intron (NM_001077261, intron 15 of 47) -71878 NR_106940 102466204 NR_106940 ENSG00000275967 MIR6880 hsa-mir-6880 microRNA 6880 ncRNA 1.456 0.963 1.087 0.445 0.913 0.464 1.135 0.739 0.185 0.793 0.570 0.709 1.487 0.190 0.094 1.077 1.712 0.631 1.351 0.657 0.713 nan 0.233 0.920 0.998 0.979 1.598 1.308 2.424 1.827 2.017 0.742 0.887 0.907 1.092 1.455 3.114 0.886 0.524 2.836 1.177 0.320 0.259 1.135 0.709 1.020 0.810 0.374 0.721 1310 chr3 181655325 181667108 + 0 NA Intergenic Intergenic -8936 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 0.995 2.063 1.235 0.150 0.922 0.396 0.333 0.141 0.123 0.347 0.238 0.211 0.885 3.025 0.161 0.323 0.200 0.213 0.486 0.513 0.466 7.626 1.877 0.208 0.149 0.592 1.022 0.550 0.429 0.606 0.264 0.141 0.244 1.306 2.039 0.131 0.188 1.286 0.630 0.070 0.088 0.357 0.324 0.333 0.211 0.108 0.051 0.017 0.084 1783 chr9 140188986 140211739 + 0 NA TTS (NM_017820) TTS (NM_017820) -3659 NM_001004354 441478 Hs.535075 NM_001004354 ENSG00000198435 NRARP - NOTCH-regulated ankyrin repeat protein protein-coding 1.734 1.459 1.247 4.193 0.989 0.502 1.503 0.291 0.219 0.497 0.182 1.737 0.970 1.224 0.078 1.148 2.069 0.806 nan 2.078 nan 2.238 0.619 0.736 0.712 0.279 0.436 3.994 6.693 1.534 1.682 0.826 1.039 1.772 1.877 0.838 0.937 0.679 0.552 0.964 0.383 0.371 0.532 1.503 1.737 1.015 3.365 0.482 0.135 1346 chr4 94748555 94758308 + 0 NA Intergenic Intergenic 3353 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 0.343 0.466 0.366 0.268 0.329 0.149 0.273 0.062 0.042 0.115 0.065 0.012 0.758 0.034 0.054 0.495 0.608 0.323 0.588 0.419 0.327 0.121 0.019 0.308 0.392 0.121 0.190 0.343 0.345 0.373 0.216 0.137 0.230 0.085 0.156 0.083 0.155 0.138 0.202 0.247 0.074 0.044 7.349 0.273 0.012 0.020 0.052 0.022 0.025 260 chr10 14878027 14882089 + 0 NA promoter-TSS (NM_001029954) promoter-TSS (NM_001029954) -75 NM_001029954 441549 Hs.559067 NM_001029954 ENSG00000185267 CDNF ARMETL1 cerebral dopamine neurotrophic factor protein-coding nan 3.617 6.207 4.329 3.235 1.815 2.237 4.019 0.514 1.963 0.480 4.770 5.296 2.113 0.196 5.535 6.175 6.732 10.165 6.840 5.799 15.400 7.302 5.892 6.714 4.786 6.118 5.370 9.243 4.803 5.731 2.128 4.194 4.564 5.154 6.648 5.740 3.159 1.770 0.819 1.745 0.699 2.255 2.237 4.770 0.667 2.272 1.164 1.644 1464 chr6 20431824 20448819 + 0 NA intron (NM_001243076, intron 1 of 6) intron (NM_001243076, intron 1 of 6) 36411 NM_001243076 1871 Hs.269408 NM_001949 ENSG00000112242 E2F3 E2F-3 E2F transcription factor 3 protein-coding 1.608 0.880 nan 0.386 0.454 0.245 0.264 0.343 0.156 0.378 0.222 0.400 nan 0.103 0.113 0.442 0.339 0.490 nan 0.486 0.714 nan 0.205 0.609 0.616 3.349 4.574 1.107 1.098 0.625 0.452 0.186 0.405 0.939 1.360 0.734 1.319 0.953 0.783 0.072 0.116 0.174 0.158 0.264 0.400 0.519 0.364 0.076 0.392 1371 chr5 3917965 3922946 + 0 NA Intergenic L1MA3|LINE|L1 324287 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 0.407 0.844 0.972 0.136 0.215 0.162 0.154 0.222 0.130 0.188 0.269 0.128 0.543 0.073 4.058 2.759 8.822 nan 0.264 0.404 0.063 0.102 0.037 0.066 0.216 0.312 nan 0.151 nan 0.199 1.811 3.425 0.068 0.061 0.091 0.158 0.247 nan 0.033 0.054 0.052 0.154 0.128 0.062 1.264 0.024 1138 chr20 20338373 20397011 + 0 NA Intergenic Intergenic 18927 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 3.247 1.939 nan 3.539 3.671 1.867 2.224 0.107 0.080 1.874 0.924 4.851 6.220 0.046 0.072 1.705 2.151 0.314 0.383 6.638 5.414 6.226 2.422 0.586 0.589 2.975 4.196 5.819 6.617 5.821 7.590 1.212 2.276 6.224 5.686 0.659 1.029 2.025 1.163 1.893 4.018 1.545 1.177 2.224 4.851 1.454 2.390 1.131 0.661 171 chr1 167071477 167080421 + 0 NA intron (NM_001080426, intron 2 of 5) intron (NM_001080426, intron 2 of 5) 12622 NM_001080426 92235 Hs.632462 NM_001080426 ENSG00000198842 DUSP27 - dual specificity phosphatase 27 (putative) protein-coding 1.467 nan 4.351 0.119 0.248 0.179 3.526 0.162 0.073 0.384 0.232 0.093 1.244 0.048 0.072 0.595 0.511 0.382 0.667 0.563 nan 8.295 1.793 0.204 0.243 0.354 0.563 1.376 nan 0.327 0.237 1.109 1.780 5.014 6.996 0.947 2.119 0.501 0.447 0.072 0.486 2.056 0.232 3.526 0.093 0.467 0.137 1.717 0.619 1757 chr9 128604569 128620130 + 0 NA intron (NR_024123, intron 2 of 6) intron (NR_024123, intron 2 of 6) 101871 NM_001134778 5090 Hs.428027 NM_006195 ENSG00000167081 PBX3 - PBX homeobox 3 protein-coding nan nan 1.429 0.388 0.375 0.228 0.436 0.297 0.079 0.358 0.318 0.169 nan 0.182 0.070 0.181 0.162 0.206 0.357 0.446 0.547 0.644 0.255 0.227 0.224 1.270 nan 0.528 0.552 6.314 4.242 0.096 0.174 1.508 1.612 1.962 4.317 nan 0.480 0.057 0.206 0.459 0.097 0.436 0.169 0.262 0.072 0.038 1.559 390 chr11 100547356 100565021 + 0 NA non-coding (NR_133571, exon 2 of 2) non-coding (NR_133571, exon 2 of 2) -2219 NM_152432 143872 Hs.741465 NM_152432 ENSG00000165895 ARHGAP42 GRAF3 Rho GTPase activating protein 42 protein-coding 1.042 1.068 0.846 0.060 0.532 0.300 0.332 0.498 0.110 0.256 0.186 0.028 1.182 0.086 0.076 0.441 0.375 0.599 1.497 0.642 0.560 0.105 0.083 1.714 1.771 4.232 4.744 0.152 0.180 0.592 0.287 0.153 0.312 0.459 0.445 0.632 1.615 1.731 0.979 0.029 0.060 0.076 0.414 0.332 0.028 0.089 0.812 0.045 0.509 664 chr15 76618838 76635029 + 0 NA Intergenic MIR|SINE|MIR -2132 NM_145805 64843 Hs.444677 NM_145805 ENSG00000159556 ISL2 - ISL LIM homeobox 2 protein-coding 1.386 1.066 1.261 0.126 0.412 0.247 0.809 0.659 0.100 0.137 0.134 0.333 1.248 1.000 0.060 1.865 1.681 1.440 1.816 0.951 0.670 1.378 0.375 1.876 2.027 0.811 1.104 0.166 0.220 2.891 2.687 1.667 2.804 1.551 1.033 4.105 5.757 0.742 0.490 0.152 0.094 0.441 0.622 0.809 0.333 0.408 0.038 0.981 2.162 1243 chr22 50351540 50364780 + 0 NA TTS (NM_001001852) TTS (NM_001001852) 1646 NR_106879 102465493 NR_106879 ENSG00000276753 MIR6821 hsa-mir-6821 microRNA 6821 ncRNA 1.716 1.741 nan 1.488 2.514 1.070 4.598 1.478 0.096 1.386 0.572 2.877 2.833 1.611 0.123 1.755 2.334 2.086 4.533 2.429 2.285 1.690 0.684 3.248 3.453 0.602 1.062 2.412 4.028 2.256 2.357 0.899 1.658 2.549 3.236 1.488 1.715 1.803 0.960 0.954 1.027 0.738 1.291 4.598 2.877 0.911 2.776 0.411 0.693 218 chr1 221880247 221926947 + 0 NA intron (NR_111940, intron 1 of 2) intron (NR_111940, intron 1 of 2) 6645 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 2.421 nan 2.892 1.416 2.198 1.115 1.159 0.122 0.103 2.271 0.834 2.608 2.286 0.051 0.117 0.852 0.756 2.242 3.703 2.851 nan 3.342 2.596 2.684 2.922 1.299 1.537 2.865 3.974 1.389 1.474 0.200 0.229 2.922 3.265 2.352 5.218 2.320 1.350 0.333 0.332 0.687 0.752 1.159 2.608 0.141 1.144 0.055 2.113 1665 chr8 95955082 95973654 + 0 NA Intergenic Intergenic -2753 NM_001135733 94241 Hs.492261 NM_033285 ENSG00000164938 TP53INP1 SIP|TP53DINP1|TP53INP1A|TP53INP1B|Teap|p53DINP1 tumor protein p53 inducible nuclear protein 1 protein-coding nan 1.361 3.032 1.276 1.386 0.922 0.759 1.212 0.228 0.263 0.280 2.257 4.842 0.239 0.118 1.268 1.284 1.625 nan 2.865 2.876 2.605 0.782 1.183 1.069 2.051 2.776 4.113 6.611 0.900 0.670 1.053 2.262 2.175 2.460 0.811 1.795 0.731 0.495 1.567 0.259 0.856 1.289 0.759 2.257 0.470 0.966 1.110 0.266 296 chr11 2268381 2294721 + 0 NA Intergenic Intergenic 10631 NM_005170 430 Hs.152475 NM_005170 ENSG00000183734 ASCL2 ASH2|HASH2|MASH2|bHLHa45 achaete-scute family bHLH transcription factor 2 protein-coding 0.406 1.288 0.877 0.073 0.252 0.122 0.131 0.065 0.098 0.082 0.107 0.118 0.792 0.054 0.053 6.525 9.576 4.480 3.016 0.265 0.330 0.506 0.142 8.919 8.986 0.154 0.192 0.204 0.300 0.223 0.102 4.529 8.155 0.243 0.159 0.073 0.093 0.304 0.288 0.541 0.054 0.022 0.015 0.131 0.118 0.015 0.008 5.394 0.028 181 chr1 180235767 180272281 + 0 NA Intergenic AluJr|SINE|Alu -10208 NR_037642 100527964 Hs.496545 NR_037642 ENSG00000230124 LHX4-AS1 - LHX4 antisense RNA 1 ncRNA nan nan 1.413 0.174 0.324 0.168 0.267 0.273 0.127 0.159 0.183 0.320 0.379 0.122 0.123 0.577 0.534 0.598 0.706 0.541 nan 0.335 0.180 nan 0.492 0.834 1.094 0.484 0.472 0.747 0.473 0.582 0.702 0.128 0.148 1.129 nan 0.797 0.606 0.052 0.258 0.015 0.141 0.267 0.320 0.072 0.056 0.114 1.199 163 chr1 164556568 164621968 + 0 NA intron (NM_001204963, intron 2 of 8) AluJb|SINE|Alu 60671 NM_002585 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 - PBX homeobox 1 protein-coding 1.499 nan 1.892 0.871 1.422 0.637 3.409 1.262 0.259 0.385 0.261 1.484 1.579 0.043 0.107 0.930 1.229 2.167 6.311 1.321 nan 1.890 1.318 0.531 0.545 3.336 3.966 1.632 nan 0.392 0.237 1.485 2.041 1.328 1.114 0.431 0.808 0.989 0.800 0.902 1.946 0.336 1.818 3.409 1.484 0.129 0.121 1.248 0.237 1257 chr3 35710312 35725453 + 0 NA intron (NM_016300, intron 1 of 19) intron (NM_016300, intron 1 of 19) -3231 NM_001267618 10777 Hs.475902 NM_016300 ENSG00000172995 ARPP21 ARPP-21|R3HDM3|RCS|TARPP cAMP regulated phosphoprotein 21 protein-coding 0.894 0.931 0.627 0.087 0.073 0.053 0.110 0.128 0.106 0.063 0.125 0.016 0.253 0.036 0.110 0.441 0.351 0.342 0.181 0.284 0.362 0.059 0.071 0.158 0.127 2.701 nan 0.241 0.236 2.977 2.109 0.178 0.214 0.025 0.040 0.315 0.886 0.347 0.304 0.048 0.076 0.012 0.084 0.110 0.016 0.096 0.174 0.045 0.171 505 chr12 110839766 110842629 + 0 NA intron (NM_016238, intron 1 of 10) CpG 338 NM_016238 51434 Hs.719935 NM_016238 ENSG00000196510 ANAPC7 APC7 anaphase promoting complex subunit 7 protein-coding 7.119 nan 3.522 8.601 6.369 4.021 7.782 5.241 0.454 3.119 2.044 7.310 11.916 5.997 0.330 12.681 8.674 11.103 15.798 nan nan 12.269 10.683 23.691 25.981 7.931 9.026 nan 19.036 15.036 12.272 12.109 13.369 9.310 12.810 10.016 8.142 7.415 4.871 6.615 7.870 1.656 3.655 7.782 7.310 3.089 3.203 4.495 3.413 631 chr14 105876651 105889365 + 0 NA TTS (NR_125384) TTS (NR_125384) 3068 NR_125384 100507437 Hs.676548 NR_125384 ENSG00000251602 LOC100507437 - uncharacterized LOC100507437 ncRNA 4.282 1.620 3.202 2.114 1.949 0.918 3.138 1.069 0.257 1.220 0.517 3.193 2.871 1.593 0.117 1.957 2.542 1.578 2.200 5.373 5.231 5.910 1.751 1.831 1.713 1.750 2.540 2.939 4.588 4.876 5.243 1.442 2.532 1.703 1.770 1.330 1.724 0.690 0.351 2.202 1.493 0.422 1.207 3.138 3.193 0.834 0.974 0.621 0.790 431 chr12 6928760 6939805 + 0 NA intron (NM_019858, intron 2 of 4) intron (NM_019858, intron 2 of 4) -3256 NM_014262 10536 Hs.631655 NM_014262 ENSG00000110811 P3H3 GRCB|HSU47926|LEPREL2 prolyl 3-hydroxylase 3 protein-coding 4.142 nan nan 1.942 1.574 0.945 3.115 0.133 0.020 1.108 0.593 1.735 4.208 2.208 0.125 0.792 1.927 1.163 2.105 nan 5.915 6.436 2.419 1.761 1.812 3.794 5.476 1.757 2.107 3.144 3.164 1.383 2.933 1.924 1.296 3.114 nan 1.177 0.610 2.233 3.692 0.568 0.520 3.115 1.735 5.076 1.023 1.319 2.701 1502 chr6 51212102 51218411 + 0 NA Intergenic Intergenic -271412 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 0.770 1.293 nan 0.172 0.348 0.255 0.306 0.082 0.205 0.050 0.117 0.580 0.509 0.035 0.089 0.983 0.716 9.041 7.499 0.379 0.561 0.107 0.161 0.728 0.643 0.188 0.307 0.529 0.390 0.270 0.092 0.390 0.652 0.217 0.386 0.245 0.624 0.219 0.478 0.009 0.126 0.060 0.351 0.306 0.580 0.016 0.095 0.077 54 chr1 33113399 33121852 + 0 NA exon (NM_005610, exon 2 of 12) exon (NM_005610, exon 2 of 12) 666 NM_001135256 5928 Hs.16003 NM_005610 ENSG00000162521 RBBP4 NURF55|RBAP48|lin-53 RB binding protein 4, chromatin remodeling factor protein-coding 5.281 nan 4.508 8.737 4.982 2.943 3.818 1.795 0.315 3.453 1.650 8.631 8.961 3.864 0.167 5.984 4.610 5.735 7.505 9.911 9.728 nan 3.468 10.114 10.843 5.322 6.464 5.305 8.209 nan 6.363 5.281 6.829 3.071 4.375 7.535 6.376 3.112 nan 3.999 3.503 0.667 2.850 3.818 8.631 1.524 1.790 1.911 2.341 95 chr1 62900370 62906796 + 0 NA intron (NM_003368, intron 1 of 8) CpG 1200 NM_003368 7398 Hs.35086 NM_003368 ENSG00000162607 USP1 UBP ubiquitin specific peptidase 1 protein-coding 8.271 4.799 nan 6.379 8.532 4.632 4.905 4.085 0.275 3.097 1.425 7.887 12.145 5.549 0.258 7.184 6.608 8.319 11.498 16.983 16.497 9.514 7.382 17.197 18.185 nan 9.041 10.607 15.893 10.682 12.306 5.026 9.946 5.140 5.383 10.830 8.519 3.717 2.158 5.805 5.367 0.923 4.540 4.905 7.887 2.203 2.647 2.368 3.638 1531 chr6 161854320 161866929 + 0 NA intron (NM_013987, intron 8 of 10) intron (NM_013987, intron 8 of 10) -31385 NR_134595 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 0.899 nan 0.708 0.125 2.133 1.311 0.488 1.818 0.458 0.297 0.162 0.269 0.242 0.120 0.082 2.172 3.135 7.507 8.842 0.369 0.309 3.589 1.454 0.611 0.643 0.093 0.239 0.202 0.248 nan 0.403 1.327 1.982 1.332 1.428 0.132 0.178 1.312 0.858 0.027 0.028 0.152 0.019 0.488 0.269 0.453 1.591 1.702 0.036 47 chr1 24642998 24652625 + 0 NA intron (NM_001195010, intron 1 of 15) intron (NM_001195010, intron 1 of 15) -1719 NM_021180 57822 Hs.657920 NM_021180 ENSG00000158055 GRHL3 SOM|TFCP2L4|VWS2 grainyhead like transcription factor 3 protein-coding 1.007 1.528 nan 0.955 0.747 0.267 1.118 1.674 0.118 0.036 0.087 0.462 2.495 0.045 0.104 0.439 0.491 2.330 9.400 1.215 1.239 0.729 0.140 0.705 0.860 0.215 0.429 2.702 3.136 0.308 0.230 0.606 0.704 0.451 0.407 0.299 0.456 0.372 0.395 0.924 0.939 0.040 0.116 1.118 0.462 0.151 0.206 0.064 1392 chr5 56746262 56755503 + 0 NA Intergenic Intergenic 27754 NM_001017992 345651 Hs.482167 NM_001017992 ENSG00000169067 ACTBL2 ACT actin, beta like 2 protein-coding nan nan 0.753 0.044 2.203 1.185 0.207 1.596 0.070 0.035 0.097 0.013 1.294 0.092 0.103 0.121 0.076 3.024 10.622 0.152 0.174 nan 0.076 0.129 0.177 1.217 1.496 0.129 0.149 nan 0.301 0.043 0.104 0.450 1.040 0.194 0.563 0.608 0.615 0.137 0.097 0.144 0.095 0.207 0.013 0.062 0.011 0.146 990 chr19 50174974 50184276 + 0 NA promoter-TSS (NM_001207042) promoter-TSS (NM_001207042) -784 NR_033397 3276 Hs.20521 NM_001536 ENSG00000126457 PRMT1 ANM1|HCP1|HRMT1L2|IR1B4 protein arginine methyltransferase 1 protein-coding 3.338 1.723 3.069 2.148 4.251 2.477 2.119 1.341 0.225 1.129 0.615 2.307 3.358 3.263 0.145 2.588 2.622 2.469 4.036 3.619 4.122 6.281 3.173 7.652 8.248 2.231 3.057 5.767 7.412 7.671 7.046 1.760 2.692 4.926 4.994 4.573 8.174 2.805 1.582 1.488 4.312 0.983 0.882 2.119 2.307 1.031 1.302 0.883 2.157 1520 chr6 134266551 134279819 + 0 NA promoter-TSS (NM_001253676) promoter-TSS (NM_001253676) -123 NM_001253676 9519 Hs.486507 NM_004865 ENSG00000028839 TBPL1 MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2 TATA-box binding protein like 1 protein-coding 1.846 1.209 4.567 1.290 1.043 0.540 1.667 0.875 0.157 0.936 0.541 1.155 3.574 2.035 0.141 1.586 1.585 1.321 1.716 3.340 2.679 nan 1.628 1.417 1.531 2.053 2.854 0.901 0.937 4.679 4.689 1.135 1.535 5.206 5.513 1.306 nan 1.894 0.791 0.350 1.567 1.522 0.577 1.667 1.155 0.701 1.405 0.396 0.577 1613 chr7 129249997 129255867 + 0 NA intron (NM_005011, intron 1 of 10) intron (NM_005011, intron 1 of 10) 1389 NM_005011 4899 Hs.654363 NM_005011 ENSG00000106459 NRF1 ALPHA-PAL nuclear respiratory factor 1 protein-coding 5.456 1.849 3.321 2.920 3.697 1.817 4.832 2.538 0.209 2.770 1.275 7.281 4.881 4.574 0.154 6.330 5.356 8.139 9.079 7.428 7.292 6.639 2.948 11.069 10.548 3.646 4.607 3.903 7.228 6.458 6.628 5.613 9.558 4.817 4.497 6.084 5.130 3.565 2.266 2.676 3.397 0.714 2.367 4.832 7.281 1.137 1.985 1.377 0.890 1494 chr6 45342345 45346581 + 0 NA intron (NM_003599, intron 1 of 10) L3|LINE|CR1 1325 NM_003599 8464 Hs.368325 NM_003599 ENSG00000196284 SUPT3H SPT3|SPT3L SPT3 homolog, SAGA and STAGA complex component protein-coding 5.118 2.429 2.669 4.023 3.813 1.632 3.652 4.130 0.152 1.518 0.714 3.230 6.819 3.866 0.150 4.560 5.926 12.554 14.766 4.751 3.844 2.195 0.678 13.501 14.609 3.240 4.335 10.734 nan 7.899 8.587 2.919 6.324 3.124 1.468 8.636 9.083 3.686 1.922 4.051 2.336 0.158 2.093 3.652 3.230 1.204 2.701 3.519 3.905 933 chr19 14116093 14118471 + 0 NA promoter-TSS (NM_002918) promoter-TSS (NM_002918) -148 NM_002918 5989 Hs.655215 NM_002918 ENSG00000132005 RFX1 EFC|RFX regulatory factor X1 protein-coding 9.225 5.227 7.810 6.851 7.632 4.158 6.026 2.141 0.338 4.014 0.493 7.659 10.522 4.853 0.187 5.282 9.944 7.485 11.118 11.927 10.330 14.041 23.480 23.893 23.835 6.065 8.061 11.448 21.805 12.437 14.089 3.509 4.885 15.004 11.476 14.699 10.517 6.007 4.530 3.839 3.913 1.477 2.276 6.026 7.659 2.114 4.201 1.205 3.936 290 chr10 132936952 132944104 + 0 NA intron (NM_174937, intron 7 of 11) intron (NM_174937, intron 7 of 11) 47047 NR_120623 101927489 NR_120623 ENSG00000230098 TCERG1L-AS1 - TCERG1L antisense RNA 1 ncRNA 0.433 1.442 0.510 1.943 5.350 2.851 0.310 0.041 0.002 0.132 0.187 9.686 0.951 0.016 0.092 0.216 0.066 0.058 0.107 2.376 3.265 5.882 2.362 0.052 0.067 0.056 0.088 7.653 7.128 0.166 0.075 0.376 0.610 0.573 0.311 0.069 0.076 1.901 1.032 1.098 0.880 0.162 0.022 0.310 9.686 0.083 0.113 0.111 529 chr13 41632993 41637553 + 0 NA promoter-TSS (NM_007187) promoter-TSS (NM_007187) -424 NM_007187 11193 Hs.411300 NM_007187 ENSG00000120688 WBP4 FBP21 WW domain binding protein 4 protein-coding 6.332 4.403 6.543 5.435 4.348 1.935 1.556 3.951 0.351 2.357 1.325 7.021 13.597 6.749 0.202 12.002 14.820 5.311 8.037 13.445 10.659 11.072 5.181 8.511 9.337 6.599 8.016 4.216 6.926 8.968 10.197 6.215 12.831 5.300 4.848 10.773 10.744 2.691 1.807 4.445 6.029 0.876 3.723 1.556 7.021 0.638 1.712 4.921 3.432 1219 chr22 24127574 24133479 + 0 NA intron (NM_001317946, intron 1 of 8) Tigger8|DNA|TcMar-Tigger 1408 NM_001007468 6598 Hs.534350 NM_003073 ENSG00000099956 SMARCB1 BAF47|CSS3|INI1|MRD15|PPP1R144|RDT|RTPS1|SNF5|SNF5L1|SWNTS1|Sfh1p|Snr1|hSNFS SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 protein-coding 2.610 nan 3.319 1.926 2.986 1.709 2.015 1.584 0.166 1.227 0.329 3.922 6.900 1.897 0.123 3.407 3.465 3.498 5.336 5.029 5.735 3.211 1.536 7.185 7.642 3.082 4.423 3.810 5.561 4.320 3.749 2.121 3.254 2.448 3.205 2.797 2.914 5.998 3.228 1.391 3.144 0.694 1.775 2.015 3.922 1.255 1.992 1.195 0.887 654 chr15 63755848 63809301 + 0 NA Intergenic MSTC|LTR|ERVL-MaLR -14136 NM_006537 9960 Hs.458499 NM_006537 ENSG00000140455 USP3 SIH003|UBP ubiquitin specific peptidase 3 protein-coding 1.467 1.537 nan 0.741 0.609 0.342 0.315 0.824 0.166 0.791 0.500 0.852 1.482 0.385 0.100 1.649 2.174 1.192 2.018 0.927 0.927 nan 0.663 0.889 0.900 1.276 1.717 2.137 2.892 2.411 2.027 0.697 0.978 2.518 2.809 1.644 3.562 1.220 0.693 0.155 0.443 0.848 0.178 0.315 0.852 0.220 0.586 0.254 0.890 891 chr18 55096394 55115786 + 0 NA intron (NM_004852, intron 1 of 1) CpG 3173 NM_004852 9480 Hs.194725 NM_004852 ENSG00000119547 ONECUT2 OC-2|OC2 one cut homeobox 2 protein-coding nan 1.023 1.734 1.081 1.093 0.551 2.655 0.054 0.060 0.557 0.371 1.344 3.869 0.269 0.059 2.012 2.572 1.070 0.865 2.572 2.332 2.382 0.668 0.468 0.558 1.050 1.408 1.315 1.686 1.064 1.308 1.290 2.518 3.975 4.714 0.517 0.900 nan 1.913 0.502 0.798 1.143 2.011 2.655 1.344 0.275 1.240 1.386 0.083 411 chr11 126838910 126861034 + 0 NA intron (NM_032531, intron 1 of 16) L2c|LINE|L2 8466 NR_036126 100422918 NR_036126 ENSG00000266215 MIR3167 - microRNA 3167 ncRNA 0.588 1.681 0.631 1.661 0.713 0.391 0.551 0.044 0.029 0.603 0.339 2.455 2.150 0.045 0.108 0.450 0.439 0.403 0.350 3.660 4.891 2.577 0.838 0.091 0.099 0.194 0.324 2.532 2.703 0.372 0.213 0.457 0.573 0.625 0.669 0.201 nan 2.414 1.196 1.414 0.684 0.176 0.089 0.551 2.455 0.044 0.018 0.093 0.095 480 chr12 57021546 57032342 + 0 NA intron (NM_013449, intron 1 of 28) intron (NM_013449, intron 1 of 28) -2829 NM_001300905 11176 Hs.314263 NM_013449 ENSG00000076108 BAZ2A TIP5|WALp3 bromodomain adjacent to zinc finger domain 2A protein-coding nan 2.606 2.737 2.770 2.800 1.782 2.079 2.784 0.343 2.371 1.070 2.802 6.997 1.839 0.080 nan 3.892 3.135 4.870 5.323 nan 5.476 1.944 5.590 6.089 2.208 nan 5.492 nan 4.660 4.092 1.434 3.327 2.345 2.534 4.018 8.714 2.770 1.291 0.938 4.798 0.804 1.240 2.079 2.802 0.929 2.077 1.530 3.319 594 chr14 57342704 57373142 + 0 NA intron (NR_029385, intron 1 of 3) intron (NR_029385, intron 1 of 3) 78022 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA nan nan 2.543 0.252 0.701 0.374 0.425 0.100 0.058 0.077 0.128 0.285 0.401 0.050 0.124 0.417 0.291 1.813 1.052 0.350 0.395 0.484 0.149 0.414 0.505 0.144 0.222 0.321 0.375 0.973 0.541 0.252 0.406 0.198 0.334 3.352 10.787 nan 0.551 0.036 0.140 0.041 0.114 0.425 0.285 0.057 0.030 0.189 2.237 809 chr17 66504204 66511785 + 0 NA promoter-TSS (NM_212471) promoter-TSS (NM_212471) 73 NM_212471 5573 Hs.280342 NM_002734 ENSG00000108946 PRKAR1A ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|TSE1 protein kinase cAMP-dependent type I regulatory subunit alpha protein-coding 4.991 nan 6.980 7.454 7.795 4.240 3.308 2.401 0.187 4.229 1.932 5.292 13.135 3.135 0.109 4.168 5.380 4.050 5.075 9.130 7.843 5.558 2.973 5.055 5.367 2.433 nan 13.631 17.280 6.183 5.655 2.000 4.547 6.357 5.871 3.232 3.580 5.152 2.348 1.519 4.209 1.134 2.274 3.308 5.292 1.194 3.744 1.609 0.738 1137 chr20 20174469 20224425 + 0 NA intron (NM_015585, intron 17 of 26) intron (NM_015585, intron 17 of 26) -149318 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 2.164 1.656 nan 2.277 2.806 1.496 0.857 0.118 0.068 1.510 0.824 2.651 2.430 0.035 0.069 0.771 1.160 0.247 0.764 3.437 2.957 7.530 2.675 0.245 0.292 1.899 2.556 5.215 4.910 3.932 3.662 0.390 0.648 4.618 5.815 0.652 1.707 2.796 1.451 1.259 3.391 1.240 1.268 0.857 2.651 1.287 2.700 0.272 2.766 1747 chr9 117664689 117694853 + 0 NA intron (NM_001252290, intron 2 of 4) intron (NM_001252290, intron 2 of 4) 13104 NM_001252290 944 Hs.494901 NM_001244 ENSG00000106952 TNFSF8 CD153|CD30L|CD30LG|TNLG3A tumor necrosis factor superfamily member 8 protein-coding 0.732 1.404 nan 1.066 0.610 0.393 0.304 0.158 0.064 0.436 0.235 2.890 1.916 0.022 0.095 1.950 2.539 1.008 2.781 2.993 4.048 1.170 0.480 1.532 1.592 0.169 0.351 4.579 nan 0.727 0.422 2.544 3.885 1.228 1.504 0.122 0.214 nan 0.997 3.809 0.375 0.504 0.262 0.304 2.890 0.488 0.578 3.499 0.025 161 chr1 163939560 163954143 + 0 NA Intergenic L2|LINE|L2 -553870 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 0.899 nan 1.186 3.147 1.377 0.560 0.369 0.112 0.066 0.573 0.238 1.424 1.195 0.059 0.084 0.914 0.601 3.690 1.083 0.577 nan 5.303 1.831 0.226 0.200 0.584 0.806 2.319 nan 0.470 0.204 0.525 0.608 1.114 2.157 0.420 1.045 2.182 1.056 0.123 0.347 0.254 0.870 0.369 1.424 0.026 0.487 0.105 0.132 1484 chr6 35498425 35516276 + 0 NA Intergenic ERVL-E-int|LTR|ERVL -26635 NM_003322 7287 Hs.485208 NM_003322 ENSG00000112041 TULP1 LCA15|RP14|TUBL1 tubby like protein 1 protein-coding nan 0.955 nan 0.183 0.203 0.143 0.231 0.139 0.186 0.061 0.112 0.160 0.312 0.091 0.144 0.452 0.469 0.245 nan nan 0.376 1.036 0.380 0.385 0.396 0.639 1.062 0.640 0.972 1.044 0.711 0.257 0.310 0.089 0.105 2.106 7.112 0.336 0.406 0.301 0.133 0.027 0.223 0.231 0.160 0.218 0.034 0.055 3.215 87 chr1 55993035 56009521 + 0 NA Intergenic L1PREC2|LINE|L1 309964 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 1.841 0.892 1.125 0.108 0.421 0.146 0.380 0.448 0.128 0.094 0.093 0.210 0.394 0.033 0.091 0.416 0.325 1.877 6.634 0.646 0.812 0.174 0.102 0.420 0.505 0.749 1.070 0.627 0.553 0.434 0.258 0.283 0.301 0.049 0.061 0.516 nan 0.648 0.543 0.071 0.124 0.082 0.380 0.210 0.176 0.036 0.180 0.581 1238 chr22 43187218 43197041 + 0 NA TTS (NM_014570) TTS (NM_014570) 61279 NM_001142293 26286 Hs.685225 NM_014570 ENSG00000242247 ARFGAP3 ARFGAP1 ADP ribosylation factor GTPase activating protein 3 protein-coding 1.154 nan 0.976 0.836 0.420 0.192 0.679 0.191 0.180 0.188 0.135 0.305 0.361 0.103 0.104 0.726 0.802 0.244 0.420 0.671 0.682 1.442 0.631 0.311 0.197 0.639 nan 2.976 2.788 nan 1.386 0.287 0.208 0.679 0.782 0.460 0.820 1.245 0.546 0.088 0.196 0.137 0.173 0.679 0.305 2.705 2.622 0.061 0.189 1203 chr21 36624609 36631440 + 0 NA Intergenic Intergenic -206429 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha runt related transcription factor 1 protein-coding 1.395 1.074 1.845 1.384 1.368 0.667 0.749 3.477 0.282 0.416 0.216 3.034 4.811 0.031 0.067 0.423 0.417 0.879 2.795 3.122 2.613 3.018 0.845 0.338 0.502 0.145 0.231 6.776 5.570 1.038 0.792 0.116 0.265 0.356 0.258 0.201 0.277 nan 1.312 2.447 8.169 0.041 0.046 0.749 3.034 1.176 0.087 0.036 575 chr14 24454041 24463522 + 0 NA intron (NM_198083, intron 1 of 7) intron (NM_198083, intron 1 of 7) 754 NM_198083 317749 Hs.743442 NM_198083 ENSG00000187630 DHRS4L2 SDR25C3 dehydrogenase/reductase 4 like 2 protein-coding nan 1.359 3.107 1.044 0.647 0.203 0.419 0.278 0.208 0.134 0.097 0.833 0.796 0.137 0.120 0.303 0.359 0.448 0.632 0.497 0.554 0.633 0.267 1.150 1.229 6.481 7.615 2.252 nan 1.545 1.758 0.352 0.556 0.538 0.502 0.410 0.824 1.138 0.681 0.477 0.882 0.252 0.387 0.419 0.833 0.350 1.872 0.344 0.169 843 chr18 922627 937225 + 0 NA Intergenic Intergenic 24729 NM_001117 116 Hs.531719 NM_001117 ENSG00000141433 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 protein-coding 1.102 1.913 0.838 1.965 0.213 0.209 0.077 0.107 0.076 0.172 0.158 0.433 nan 0.022 0.105 0.336 0.132 0.179 0.228 1.041 0.986 nan 0.972 0.207 0.153 0.250 nan 2.552 2.531 nan 0.247 0.038 0.077 0.405 0.620 0.212 nan nan 1.373 6.869 0.736 0.072 0.065 0.077 0.433 0.060 0.587 0.007 0.075 1015 chr2 16230316 16240467 + 0 NA Intergenic L2a|LINE|L2 44842 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 (non-protein coding) ncRNA 0.704 0.436 2.473 0.437 0.191 0.031 0.101 0.044 0.049 0.061 0.098 0.023 0.411 0.034 0.082 0.320 0.455 0.230 0.351 0.290 0.237 0.601 0.158 0.144 0.187 0.105 0.170 0.300 nan 0.554 0.313 15.353 20.399 0.025 0.045 0.464 nan 0.184 0.279 1.296 0.190 0.009 0.039 0.101 0.023 0.161 15.962 0.110 777 chr17 38247445 38281501 + 0 NA Intergenic Intergenic -7495 NM_021724 9572 Hs.724 NM_021724 ENSG00000126368 NR1D1 EAR1|THRA1|THRAL|ear-1|hRev nuclear receptor subfamily 1 group D member 1 protein-coding nan 2.352 1.826 1.143 3.284 1.878 1.938 3.419 0.630 1.289 0.689 2.290 3.591 1.311 0.105 1.819 2.074 1.624 2.592 nan 2.723 2.751 0.912 4.898 5.055 1.779 2.526 3.734 4.805 nan 2.763 1.370 1.972 0.898 1.040 1.899 3.833 1.681 0.986 1.504 2.588 0.284 1.080 1.938 2.290 0.642 1.538 0.865 1.342 20 chr1 7305508 7345852 + 0 NA intron (NM_015215, intron 5 of 22) MER33|DNA|hAT-Charlie 480296 NR_038934 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 0.955 nan 1.135 3.883 0.983 0.410 1.659 0.141 0.118 0.294 0.203 0.616 4.126 0.048 0.115 0.284 0.269 0.121 0.156 1.208 1.260 2.811 1.182 0.175 0.147 0.181 nan nan 6.405 nan 0.200 0.405 0.569 1.099 1.127 0.278 0.458 1.589 0.871 0.788 0.604 0.214 0.228 1.659 0.616 0.207 0.795 0.343 0.059 1085 chr2 178071211 178080331 + 0 NA Intergenic Intergenic -1651 NM_001330248 220988 Hs.516539 NM_194247 ENSG00000170144 HNRNPA3 2610510D13Rik|D10S102|FBRNP|HNRPA3 heterogeneous nuclear ribonucleoprotein A3 protein-coding 5.181 3.831 4.328 4.168 6.321 3.344 3.493 2.071 0.336 2.046 1.008 3.431 6.921 2.330 0.100 4.760 3.605 5.728 7.743 4.793 4.550 5.362 4.985 13.461 14.269 4.144 4.931 10.474 15.509 8.563 9.897 4.287 6.449 4.268 5.367 8.525 6.960 2.177 1.174 3.632 1.777 1.003 2.153 3.493 3.431 1.405 1.070 2.520 2.070 484 chr12 57908046 57918637 + 0 NA promoter-TSS (NR_030346) promoter-TSS (NR_030346) -299 NR_030346 693201 NR_030346 ENSG00000208028 MIR616 MIRN616|hsa-mir-616 microRNA 616 ncRNA nan 3.344 2.442 3.460 4.864 2.771 3.315 3.945 0.606 2.283 1.140 3.066 10.236 3.794 0.157 nan 6.239 4.140 6.933 5.822 nan 5.208 3.628 11.692 11.745 2.592 nan 8.235 nan 4.602 4.958 4.170 6.152 4.415 6.303 4.249 7.564 3.134 1.342 1.462 6.587 1.181 2.639 3.315 3.066 1.381 2.072 3.056 2.306 1357 chr4 185358015 185398945 + 0 NA intron (NM_002199, intron 1 of 8) intron (NM_002199, intron 1 of 8) 17246 NM_002199 3660 Hs.654566 NM_002199 ENSG00000168310 IRF2 IRF-2 interferon regulatory factor 2 protein-coding nan 1.358 nan 0.573 0.871 0.480 0.643 0.987 0.126 0.314 0.203 1.053 1.531 0.622 0.084 0.820 0.927 5.461 6.200 1.270 1.172 0.650 0.263 0.866 0.844 0.097 0.138 1.650 2.388 0.748 0.597 1.928 2.614 0.234 0.256 0.446 0.548 0.796 0.531 0.784 1.224 0.053 0.422 0.643 1.053 0.071 0.318 1.180 0.203 1292 chr3 141818403 141848832 + 0 NA intron (NM_001178139, intron 1 of 12) HAL1b|LINE|L1 34769 NM_001178138 7029 Hs.379018 NM_006286 ENSG00000114126 TFDP2 DP2 transcription factor Dp-2 protein-coding 1.287 nan nan 0.200 0.515 0.258 0.102 0.251 0.185 0.318 0.313 0.192 0.265 0.068 0.108 0.315 0.264 0.305 0.450 0.378 0.518 nan 0.322 0.316 0.265 5.588 6.104 0.296 nan nan 0.887 0.240 0.355 0.074 0.106 0.931 1.583 0.891 0.645 0.082 0.076 0.025 0.136 0.102 0.192 0.172 0.017 0.088 0.297 590 chr14 50315399 50337018 + 0 NA Intergenic AluSp|SINE|Alu -6287 NM_004713 9147 Hs.655964 NM_004713 ENSG00000165525 NEMF NY-CO-1|SDCCAG1 nuclear export mediator factor protein-coding nan nan 1.946 1.996 1.315 0.778 1.313 1.420 0.202 0.493 0.397 1.119 4.127 1.733 0.146 1.585 1.776 2.060 2.975 2.444 2.139 3.553 1.323 4.211 4.467 1.786 2.107 2.559 3.440 3.443 3.030 1.124 2.051 2.832 3.227 1.418 2.806 nan 1.125 1.030 1.252 0.490 0.643 1.313 1.119 0.329 0.982 0.686 0.659 14 chr1 6293412 6310299 + 0 NA Intergenic CpG -2397 NM_001024598 390992 Hs.532677 NM_001024598 ENSG00000173673 HES3 bHLHb43 hes family bHLH transcription factor 3 protein-coding 2.375 nan 1.457 0.202 1.306 0.719 0.984 0.615 0.153 0.632 0.361 0.784 4.320 1.104 0.101 1.140 1.601 1.147 1.522 2.762 2.584 1.917 0.734 1.760 1.712 1.400 nan nan 9.270 nan 1.688 1.299 1.807 0.938 1.206 1.821 2.273 1.036 0.605 2.374 0.939 0.181 0.420 0.984 0.784 0.534 0.661 0.381 0.553 453 chr12 14994013 15008468 + 0 NA Intergenic Intergenic -4827 NM_021071 420 Hs.591158 NM_021071 ENSG00000111339 ART4 ARTC4|CD297|DO|DOK1 ADP-ribosyltransferase 4 (Dombrock blood group) protein-coding 1.026 0.675 1.081 0.254 0.306 0.090 0.132 0.578 0.034 0.169 0.148 0.058 0.476 0.094 0.105 0.176 0.160 3.506 10.932 nan 0.605 0.295 0.149 0.289 0.309 0.909 1.229 0.476 0.416 0.500 0.247 0.204 0.325 0.070 0.043 0.463 1.842 0.406 0.437 0.100 0.099 0.006 0.184 0.132 0.058 0.034 0.047 0.062 0.317 1171 chr20 52176964 52244595 + 0 NA Intergenic CpG -11143 NM_006526 7764 Hs.155040 NM_006526 ENSG00000171940 ZNF217 ZABC1 zinc finger protein 217 protein-coding 1.807 1.796 1.443 0.528 0.630 0.341 1.215 2.391 0.423 0.090 0.107 0.122 0.757 6.508 0.286 0.846 nan 1.235 3.255 0.942 0.957 0.306 0.133 0.775 0.793 1.194 1.515 0.835 1.155 1.815 1.536 0.741 1.257 0.085 0.107 1.616 2.607 0.314 0.366 0.712 0.915 0.048 0.837 1.215 0.122 0.295 0.148 0.536 0.682 8 chr1 2984263 3005056 + 0 NA intron (NM_199454, intron 1 of 16) intron (NM_199454, intron 1 of 16) 8917 NM_199454 63976 Hs.99500 NM_022114 ENSG00000142611 PRDM16 CMD1LL|KMT8F|LVNC8|MEL1|PFM13 PR/SET domain 16 protein-coding 0.714 nan 0.450 0.068 0.679 0.424 0.203 0.043 0.069 0.023 0.042 0.029 0.285 0.532 0.099 0.156 0.088 0.196 0.288 0.234 0.323 0.051 0.053 0.148 0.092 0.092 nan nan 0.112 nan 0.055 0.123 0.133 0.049 0.070 0.063 0.075 0.128 0.178 7.022 0.030 0.019 0.015 0.203 0.029 0.140 0.010 0.018 506 chr12 115100050 115144330 + 0 NA promoter-TSS (NM_005996) promoter-TSS (NM_005996) -221 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box 3 protein-coding nan nan 0.429 0.593 0.823 0.457 0.846 0.078 0.075 0.035 0.095 0.791 2.736 0.380 0.104 0.836 1.129 0.245 0.343 nan nan nan 0.050 21.399 21.768 0.117 0.210 nan nan 0.237 0.091 3.984 8.117 0.572 0.402 0.955 1.163 nan 0.326 7.512 1.104 0.130 0.274 0.846 0.791 0.011 0.598 3.286 0.447 1522 chr6 135496932 135527180 + 0 NA intron (NR_134965, intron 5 of 16) AluJr|SINE|Alu 9603 NM_001161657 4602 Hs.606320 NM_005375 ENSG00000118513 MYB Cmyb|c-myb|c-myb_CDS|efg MYB proto-oncogene, transcription factor protein-coding 1.490 1.122 2.161 0.783 0.829 0.465 0.595 0.113 0.101 0.311 0.227 1.171 2.059 0.570 0.157 2.162 2.351 2.315 2.291 2.152 1.752 nan 0.706 3.339 3.297 0.444 0.676 0.943 1.268 1.332 1.227 13.791 20.603 0.905 0.528 1.144 nan 0.621 0.513 0.556 0.613 0.089 0.532 0.595 1.171 0.202 0.301 10.820 0.316 1343 chr4 77608449 77627448 + 0 NA intron (NM_020859, intron 2 of 10) intron (NM_020859, intron 2 of 10) 121244 NR_039655 100616254 NR_039655 ENSG00000283682 MIR548AH - microRNA 548ah ncRNA 1.397 1.009 1.343 1.395 1.274 0.692 0.693 0.447 0.136 0.805 0.397 1.761 2.634 0.880 0.075 1.227 1.246 1.930 5.027 2.102 1.962 3.109 1.658 0.656 0.608 0.241 0.331 2.191 4.531 0.485 0.300 0.329 0.684 0.560 0.535 0.267 0.599 1.148 0.759 0.191 1.774 0.075 0.410 0.693 1.761 0.036 1.041 0.142 0.111 1458 chr6 12007640 12014194 + 0 NA Intergenic Intergenic -1807 NM_002114 3096 Hs.567284 NM_002114 ENSG00000095951 HIVEP1 CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A human immunodeficiency virus type I enhancer binding protein 1 protein-coding 7.665 nan 5.468 3.996 3.748 2.252 4.977 7.713 0.466 2.253 0.924 4.079 6.161 3.356 0.121 4.141 7.614 7.496 11.774 6.556 4.538 5.887 2.298 8.065 7.634 3.001 3.551 5.949 11.106 4.623 7.149 2.078 4.918 4.707 3.334 6.027 6.954 2.395 1.415 1.398 4.295 1.513 4.045 4.977 4.079 1.152 3.291 3.098 1.949 862 chr18 42303982 42314218 + 0 NA intron (NM_001130110, intron 2 of 3) MIR|SINE|MIR 48237 NM_015559 26040 Hs.435458 NM_015559 ENSG00000152217 SETBP1 MRD29|SEB SET binding protein 1 protein-coding nan 0.855 0.878 0.406 0.334 0.125 1.723 0.717 0.125 0.199 0.136 0.416 0.469 0.042 0.112 4.653 5.484 7.356 7.153 0.699 0.881 0.621 0.253 0.060 0.054 0.611 0.992 0.578 0.556 0.558 0.380 2.013 3.658 0.327 0.411 0.295 nan 1.909 1.575 0.202 0.080 0.112 0.605 1.723 0.416 0.218 0.218 2.512 0.232 1408 chr5 81138094 81155955 + 0 NA Intergenic Intergenic -99952 NM_001256736 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 1.507 2.532 1.146 1.440 0.990 0.440 1.992 1.151 0.128 0.806 0.437 1.010 4.399 1.141 0.159 0.523 0.760 0.963 1.822 0.946 1.137 1.864 0.643 1.310 1.374 3.936 4.975 2.909 4.735 2.627 2.542 0.590 1.120 1.652 1.169 0.614 nan 1.016 0.621 1.073 1.985 0.502 0.855 1.992 1.010 0.207 0.926 1.270 0.278 459 chr12 27903287 27908343 + 0 NA intron (NM_021821, intron 7 of 7) HY1|scRNA|scRNA 18394 NM_001146221 100287284 Hs.202178 NM_001146221 ENSG00000205693 MANSC4 - MANSC domain containing 4 protein-coding nan nan nan 0.766 1.216 0.948 2.676 0.059 0.032 0.174 0.195 0.753 0.622 0.156 0.097 0.215 0.222 0.776 1.737 0.584 0.721 3.083 0.423 0.993 0.943 0.586 0.887 3.352 4.045 0.404 0.283 0.204 0.370 2.471 3.643 0.516 1.114 1.412 0.807 0.154 0.185 0.453 0.536 2.676 0.753 10.882 0.263 0.137 0.316 1256 chr3 35680689 35708150 + 0 NA intron (NM_016300, intron 1 of 19) intron (NM_016300, intron 1 of 19) 10570 NM_016300 10777 Hs.475902 NM_016300 ENSG00000172995 ARPP21 ARPP-21|R3HDM3|RCS|TARPP cAMP regulated phosphoprotein 21 protein-coding 0.800 1.478 0.764 0.143 0.161 0.123 0.153 0.098 0.035 0.080 0.100 0.048 0.947 0.027 0.085 0.371 0.332 0.181 0.257 0.726 0.612 0.136 0.071 0.283 0.301 4.065 nan 0.712 0.574 0.739 0.451 0.144 0.258 0.047 0.047 0.402 1.105 0.587 0.462 0.292 0.084 0.007 0.211 0.153 0.048 0.070 0.540 0.086 0.238 379 chr11 75036776 75064424 + 0 NA intron (NM_020251, intron 1 of 14) intron (NM_020251, intron 1 of 14) -4370 NR_029891 442900 NR_029891 ENSG00000199090 MIR326 MIRN326|hsa-mir-326|mir-326 microRNA 326 ncRNA nan 2.053 1.412 0.603 0.439 0.313 0.576 0.131 0.058 0.249 0.161 0.696 1.731 0.421 0.109 2.536 3.737 0.543 0.914 1.009 1.024 2.045 0.561 2.240 2.507 1.399 2.337 2.884 2.967 1.321 1.131 3.241 6.176 0.437 0.561 0.792 2.124 0.638 0.503 2.352 1.116 0.145 0.135 0.576 0.696 0.539 1.195 6.277 0.633 1294 chr3 154040705 154044683 + 0 NA promoter-TSS (NM_020865) promoter-TSS (NM_020865) -408 NM_020865 170506 Hs.446270 NM_020865 ENSG00000174953 DHX36 DDX36|G4R1|MLEL1|RHAU DEAH-box helicase 36 protein-coding nan 3.036 1.823 5.627 4.410 2.375 2.638 2.131 0.212 2.733 1.268 3.039 2.860 1.436 0.105 7.239 6.621 14.419 11.467 5.425 4.115 10.061 4.614 11.024 10.649 4.001 nan 3.455 6.555 8.857 8.312 6.086 9.889 1.979 2.462 4.770 4.126 3.256 2.412 1.412 1.647 0.215 2.230 2.638 3.039 0.905 1.124 3.559 1.116 448 chr12 12029353 12040683 + 0 NA intron (NM_001987, intron 5 of 7) intron (NM_001987, intron 5 of 7) -188860 NM_138723 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 0.965 1.653 2.487 5.056 1.182 0.404 0.797 0.150 0.070 1.990 1.029 2.801 3.317 0.073 0.108 0.346 0.625 0.867 3.539 nan 2.029 9.487 2.498 1.144 1.331 0.529 0.901 5.412 4.878 0.406 0.285 0.378 0.709 0.753 1.100 0.480 0.663 1.856 0.815 0.241 0.286 0.222 0.035 0.797 2.801 0.236 0.675 0.168 0.142 1523 chr6 135553615 135582319 + 0 NA Intergenic MER41A|LTR|ERV1 7669 NR_030317 693126 NR_030317 ENSG00000207689 MIR548A2 MIRN548A2 microRNA 548a-2 ncRNA 0.910 0.911 1.136 0.447 0.671 0.385 0.179 0.067 0.061 0.148 0.067 0.330 0.490 0.042 0.124 2.190 1.992 2.773 2.822 0.459 0.560 nan 0.821 2.155 2.270 0.232 0.342 0.556 0.608 0.602 0.442 15.503 19.841 0.196 0.274 0.414 nan 0.497 0.415 0.092 0.099 0.030 0.066 0.179 0.330 0.077 0.089 13.429 0.168 353 chr11 62647349 62651912 + 0 NA intron (NM_001012662, intron 5 of 11) intron (NM_001012662, intron 5 of 11) 459 NR_037193 6520 Hs.502769 NM_002394 ENSG00000168003 SLC3A2 4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE solute carrier family 3 member 2 protein-coding nan 4.671 3.811 6.877 10.037 5.335 6.537 5.326 0.281 3.058 1.195 6.211 19.070 7.417 0.301 6.807 6.831 8.093 12.883 8.976 7.073 8.564 5.956 12.581 12.824 4.662 5.884 7.831 10.816 3.246 3.973 7.594 12.790 9.332 12.252 3.249 7.883 2.614 1.030 7.900 8.027 1.972 7.495 6.537 6.211 1.379 2.073 3.657 1.274 1714 chr9 6407411 6415738 + 0 NA Intergenic AluSx1|SINE|Alu -1577 NM_152896 115426 Hs.493401 NM_152896 ENSG00000147854 UHRF2 NIRF|RNF107|TDRD23|URF2 ubiquitin like with PHD and ring finger domains 2 protein-coding 2.594 4.262 2.576 2.249 2.213 1.172 2.723 0.982 0.232 1.601 0.714 1.852 3.680 0.950 0.127 1.580 1.575 3.065 4.299 4.225 3.716 4.919 2.028 2.618 2.564 5.301 7.373 2.261 3.548 3.165 3.773 1.674 3.369 3.205 3.018 2.795 nan 2.767 2.152 1.365 1.543 0.592 1.414 2.723 1.852 0.376 1.415 0.773 0.426 1253 chr3 25077097 25091691 + 0 NA intron (NM_001290216, intron 2 of 10) L1MA9|LINE|L1 213580 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 0.783 1.270 0.581 0.024 0.302 0.132 0.547 1.512 0.066 0.151 0.108 0.016 0.218 0.075 0.074 0.210 0.125 3.636 7.050 0.739 0.702 0.111 0.028 0.207 0.174 0.708 0.844 0.240 0.212 nan 0.299 0.233 0.429 0.739 1.121 0.165 0.215 0.384 0.349 0.259 0.066 0.092 0.243 0.547 0.016 0.099 0.051 0.245 0.060 558 chr13 111789598 111807616 + 0 NA intron (NR_046516, intron 1 of 2) MER5A|DNA|hAT-Charlie 2305 NR_046516 100874226 Hs.577834 NR_046516 ARHGEF7-AS1 - ARHGEF7 antisense RNA 1 ncRNA 2.154 nan 3.113 2.113 1.062 0.516 1.794 0.460 0.110 0.661 0.312 3.847 1.722 0.431 0.074 2.289 2.174 1.318 1.984 3.842 3.981 2.800 1.311 1.101 1.237 0.190 0.339 3.132 4.013 1.274 1.253 1.383 2.104 1.741 2.009 1.269 1.047 0.515 0.327 0.712 1.432 0.696 2.331 1.794 3.847 0.306 1.267 0.352 0.274 957 chr19 41046603 41055365 + 0 NA intron (NM_020971, intron 20 of 35) L1ME4a|LINE|L1 14589 NM_025213 57731 Hs.32706 NM_020971 ENSG00000160460 SPTBN4 QV|SPNB4|SPTBN3 spectrin beta, non-erythrocytic 4 protein-coding 1.517 0.764 2.003 0.186 0.644 0.292 0.126 0.222 0.260 0.110 0.067 0.287 0.911 0.161 0.099 0.365 0.442 0.212 0.315 0.480 0.469 0.394 0.104 0.250 0.343 1.044 1.328 0.293 0.310 7.463 5.465 0.408 0.376 0.263 0.340 1.066 3.636 2.244 0.953 1.637 0.153 0.065 0.574 0.126 0.287 1.779 0.774 0.068 0.972 479 chr12 56543847 56556468 + 0 NA intron (NM_002475, intron 5 of 7) AluSx1|SINE|Alu -1888 NM_021019 4637 Hs.632717 NM_021019 ENSG00000092841 MYL6 ESMLC|LC17|LC17-GI|LC17-NM|LC17A|LC17B|MLC-3|MLC1SM|MLC3NM|MLC3SM myosin light chain 6 protein-coding nan 2.842 1.994 2.840 4.006 2.226 3.659 1.495 0.243 2.368 1.271 3.963 7.942 2.291 0.112 nan 4.372 3.598 4.741 7.139 nan 7.842 2.975 6.426 6.870 3.128 nan 5.484 nan 4.492 4.400 1.741 2.688 5.302 5.836 2.369 3.721 3.893 1.767 2.228 3.672 1.447 1.354 3.659 3.963 1.577 2.068 1.255 1.586 386 chr11 85950243 85958168 + 0 NA Intergenic Intergenic -1221 NM_001308007 8726 Hs.503510 NM_003797 ENSG00000074266 EED HEED|WAIT1 embryonic ectoderm development protein-coding 1.837 2.057 1.574 2.944 2.875 1.864 1.384 0.830 0.060 1.426 0.711 1.934 5.524 2.396 0.087 6.737 5.885 7.426 6.005 5.847 6.541 4.205 3.198 11.327 12.426 3.423 3.660 4.752 6.093 4.605 3.888 3.212 5.500 4.082 4.761 2.982 3.058 2.289 1.270 2.390 2.184 0.864 1.781 1.384 1.934 4.023 1.118 1.386 0.966 883 chr18 53013547 53025526 + 0 NA intron (NM_001330604, intron 6 of 19) intron (NM_001330604, intron 6 of 19) -30446 NM_001243235 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding nan 0.857 0.868 0.096 0.652 0.227 0.182 0.181 0.058 0.117 0.199 0.210 0.272 0.296 0.062 0.476 0.393 5.349 6.396 0.476 0.758 0.768 0.426 0.648 0.569 1.038 1.142 0.263 0.355 0.720 0.560 0.212 0.276 0.378 0.513 0.264 0.545 nan 1.247 0.029 0.142 0.087 0.080 0.182 0.210 0.048 0.106 0.058 0.132 1372 chr5 4242407 4246965 + 0 NA Intergenic Intergenic -528908 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 0.334 0.793 0.817 0.173 0.293 0.107 0.086 0.099 0.320 0.138 0.122 0.117 0.320 0.040 0.124 8.054 8.898 14.434 nan 0.327 0.534 0.074 0.079 0.078 0.083 0.161 0.369 nan 0.349 nan 0.338 3.306 5.753 0.051 0.071 0.121 0.252 0.152 nan 0.098 0.041 0.035 0.086 0.117 0.021 0.021 1.676 0.028 374 chr11 72469039 72505942 + 0 NA intron (NM_006645, intron 2 of 6) MIR3|SINE|MIR -7085 NR_039841 100616410 NR_039841 ENSG00000265064 MIR4692 - microRNA 4692 ncRNA nan 1.698 1.417 2.321 2.001 1.001 0.405 0.258 0.117 0.512 0.201 1.684 2.906 0.329 0.116 1.106 1.660 0.625 0.956 1.873 1.847 3.585 1.591 2.673 2.760 0.801 1.215 5.372 5.678 0.972 0.901 1.146 1.719 1.938 1.936 0.567 1.415 1.395 0.865 2.279 2.584 0.522 0.517 0.405 1.684 0.276 0.924 0.628 0.305 1199 chr21 36165816 36170053 + 0 NA intron (NM_001001890, intron 5 of 5) intron (NM_001001890, intron 5 of 5) 49812 NR_038885 100506385 Hs.120179 NR_038885 ENSG00000234380 LINC01426 lincRNA-uc002yug.2 long intergenic non-protein coding RNA 1426 ncRNA 1.312 0.568 1.617 1.228 1.078 0.606 0.874 0.420 0.039 0.261 0.198 6.400 1.081 0.025 0.087 3.111 6.670 3.347 6.827 2.565 3.234 0.707 0.396 4.874 4.739 0.124 0.303 5.040 4.911 0.604 0.347 12.060 7.414 0.352 0.567 0.581 1.284 nan 0.957 0.199 1.089 0.023 0.467 0.874 6.400 0.608 0.410 5.776 0.483 737 chr17 7379117 7391434 + 0 NA intron (NM_001102614, intron 1 of 1) intron (NM_001102614, intron 1 of 1) 554 NM_001102614 643664 Hs.632234 NM_001102614 ENSG00000259224 SLC35G6 AMAC1L3|TMEM21B solute carrier family 35 member G6 protein-coding 3.982 2.228 2.601 1.645 2.908 1.795 2.444 1.749 0.354 1.267 0.573 4.089 4.929 10.503 0.489 5.341 6.272 4.175 6.025 7.570 6.899 5.094 3.245 5.397 5.656 3.407 4.098 6.112 7.712 2.804 2.754 3.317 4.452 2.158 2.269 5.387 8.960 1.537 0.932 3.341 2.198 0.341 0.956 2.444 4.089 0.820 3.825 1.716 4.260 942 chr19 19684320 19692807 + 0 NA intron (NR_038198, intron 2 of 7) AluSc|SINE|Alu 39489 NM_153221 148113 Hs.279574 NM_153221 ENSG00000160161 CILP2 CLIP-2 cartilage intermediate layer protein 2 protein-coding 2.717 0.795 1.332 1.069 1.456 0.794 0.542 0.160 0.152 0.662 0.474 0.225 0.365 0.090 0.095 0.656 0.779 0.398 0.403 0.554 0.732 9.129 2.438 0.361 0.328 0.874 1.087 0.327 0.467 3.906 4.352 0.244 0.327 2.722 3.918 1.144 2.916 3.906 1.560 0.072 0.142 0.949 0.101 0.542 0.225 0.308 0.047 0.035 0.814 1009 chr2 5505075 5531375 + 0 NA Intergenic MIRc|SINE|MIR 313025 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 0.831 0.596 0.741 0.153 0.663 0.322 0.521 0.048 0.061 0.196 0.141 0.329 0.498 0.046 0.094 0.931 0.885 3.011 5.164 0.552 0.581 0.846 0.393 0.090 0.038 0.176 0.309 0.759 0.834 0.515 0.195 0.231 0.325 0.152 0.289 0.378 0.697 0.164 0.226 0.042 0.169 0.051 0.362 0.521 0.329 0.312 0.061 0.147 0.128 460 chr12 29300296 29308954 + 0 NA intron (NM_001271783, intron 1 of 11) intron (NM_001271783, intron 1 of 11) 2689 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding nan nan nan 4.170 0.207 0.055 2.566 1.196 0.130 0.800 0.563 0.070 2.150 0.289 0.110 2.336 2.928 0.717 1.155 9.531 7.335 0.141 0.055 12.885 13.473 7.793 8.615 0.977 1.530 2.520 2.745 2.426 3.686 0.402 0.270 0.491 0.819 0.268 0.355 8.219 6.736 0.065 0.311 2.566 0.070 0.693 0.059 1.695 0.084 134 chr1 155033725 155067762 + 0 NA promoter-TSS (NM_004952) promoter-TSS (NM_004952) -605 NM_004952 1944 Hs.516656 NM_004952 ENSG00000143590 EFNA3 EFL2|EPLG3|Ehk1-L|LERK3 ephrin A3 protein-coding nan nan 2.627 0.752 1.176 0.735 1.741 0.186 0.109 0.436 0.294 0.937 5.809 0.961 0.100 3.381 5.046 2.024 2.762 3.364 nan 1.352 0.462 0.809 0.835 1.078 1.503 1.992 2.938 1.313 1.110 3.048 4.494 1.214 0.913 1.032 2.132 1.498 0.750 0.674 2.495 0.214 1.643 1.741 0.937 1.215 0.913 3.365 0.255 1112 chr2 223517742 223522355 + 0 NA intron (NM_005687, intron 1 of 16) intron (NM_005687, intron 1 of 16) 1026 NM_005687 10056 Hs.471452 NM_005687 ENSG00000116120 FARSB FARSLB|FRSB|HSPC173|PheHB|PheRS phenylalanyl-tRNA synthetase beta subunit protein-coding nan 3.667 3.958 5.793 6.972 3.283 6.181 2.823 0.278 3.596 2.196 6.726 nan 3.491 0.252 10.239 7.649 8.647 11.101 8.376 8.940 6.905 5.763 16.925 18.038 5.271 6.520 9.506 15.874 10.809 10.293 8.489 9.296 5.328 7.393 7.515 nan 4.221 2.285 3.356 2.253 0.993 1.714 6.181 6.726 1.758 2.224 2.384 2.621 452 chr12 14946777 14959135 + 0 NA intron (NM_016312, intron 3 of 11) intron (NM_016312, intron 3 of 11) 3445 NM_016312 51729 Hs.655138 NM_016312 ENSG00000084463 WBP11 NPWBP|PPP1R165|SIPP1|WBP-11 WW domain binding protein 11 protein-coding 2.542 1.187 1.820 1.988 1.462 0.716 0.696 0.434 0.052 1.278 0.736 1.017 2.177 0.973 0.159 1.056 0.886 1.639 2.533 nan 3.028 4.387 1.705 3.299 3.493 1.554 2.006 1.716 2.468 2.644 2.091 1.222 1.885 1.010 1.267 4.631 9.068 1.168 0.694 0.559 0.625 0.111 1.032 0.696 1.017 0.101 0.524 0.511 2.896 297 chr11 3009185 3024670 + 0 NA Intergenic Intergenic -3320 NM_005969 4676 Hs.731784 NM_005969 ENSG00000205531 NAP1L4 NAP1L4b|NAP2|NAP2L|hNAP2 nucleosome assembly protein 1 like 4 protein-coding 2.635 2.701 4.252 1.462 1.295 0.725 1.263 0.638 0.099 1.218 0.743 1.736 8.191 0.944 0.106 4.401 6.076 2.778 3.731 2.244 2.368 3.709 1.227 5.747 5.888 2.234 3.073 1.358 2.862 2.814 3.027 2.905 5.303 4.510 4.984 1.849 1.585 2.171 1.274 1.377 1.138 1.204 0.433 1.263 1.736 0.664 0.458 2.742 0.493 1024 chr2 25561624 25566171 + 0 NA intron (NM_175630, intron 1 of 3) intron (NM_175630, intron 1 of 3) 887 NM_022552 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 4.699 1.774 5.361 4.859 4.637 2.851 4.946 0.661 0.070 6.060 2.408 4.645 13.889 4.104 0.088 1.578 5.645 2.409 2.149 8.422 7.213 5.014 1.765 9.873 7.958 1.393 2.192 6.950 nan 2.165 2.968 2.044 6.116 3.407 2.134 2.062 2.841 1.942 0.894 7.497 9.833 1.125 3.652 4.946 4.645 1.346 5.117 1.803 1.253 234 chr1 235488332 235495243 + 0 NA promoter-TSS (NM_001206794) promoter-TSS (NM_001206794) 34 NM_001037277 9453 Hs.730768 NM_004837 ENSG00000152904 GGPS1 GGPPS|GGPPS1 geranylgeranyl diphosphate synthase 1 protein-coding 6.928 5.570 4.502 6.474 5.760 3.314 3.693 3.653 0.280 4.191 2.372 5.245 8.712 3.972 0.157 5.548 5.681 10.562 15.953 11.619 10.068 nan 3.513 18.590 19.225 4.255 5.224 nan 7.920 6.334 6.842 2.037 4.597 2.307 2.842 6.852 8.222 nan 1.441 3.619 3.072 0.386 2.502 3.693 5.245 0.958 2.473 0.920 1.823 351 chr11 62471831 62482339 + 0 NA promoter-TSS (NR_037948) promoter-TSS (NR_037948) 6 NR_037948 26580 Hs.533709 NM_032667 ENSG00000168000 BSCL2 GNG3LG|HMN5|PELD|SPG17 BSCL2, seipin lipid droplet biogenesis associated protein-coding nan 2.516 1.834 3.808 2.412 1.556 3.334 0.654 0.095 1.374 0.765 3.189 7.048 1.956 0.171 6.402 5.757 3.225 4.542 7.066 6.930 7.287 3.313 1.030 0.982 1.482 1.881 5.122 7.311 2.265 1.896 3.441 4.210 4.257 5.123 2.419 2.682 3.218 1.648 4.549 3.145 0.946 1.902 3.334 3.189 0.984 2.434 2.365 0.324 208 chr1 212683685 212704465 + 0 NA Intergenic MIRc|SINE|MIR -24961 NR_125985 101929565 NR_125985 ENSG00000228067 LINC01740 - long intergenic non-protein coding RNA 1740 ncRNA 1.738 1.758 2.357 0.282 0.553 0.387 0.402 0.248 0.070 0.293 0.201 0.270 nan 0.062 0.132 0.430 0.333 0.622 1.272 0.607 0.648 nan 0.279 0.375 0.503 0.341 nan 0.423 0.464 2.110 2.335 0.135 0.166 0.410 0.749 1.574 5.140 0.564 0.588 0.302 0.043 0.028 0.118 0.402 0.270 0.444 0.123 0.033 1.768 1400 chr5 69195370 69201131 + 0 NA Intergenic Intergenic -122822 NM_022968 8293 Hs.726820 NM_021967 ENSG00000172058 SERF1A 4F5|FAM2A|H4F5|SERF1|SMAM1 small EDRK-rich factor 1A protein-coding 3.624 8.398 2.891 0.979 0.518 0.306 0.617 0.310 0.306 0.807 0.386 0.410 0.430 0.130 0.103 0.526 0.784 1.011 1.298 0.949 0.813 4.379 1.474 0.985 0.818 1.290 2.109 1.075 2.108 1.842 1.559 0.291 0.469 4.354 4.412 0.704 1.024 1.530 1.047 0.385 0.453 2.111 0.454 0.617 0.410 0.323 0.195 0.066 0.277 238 chr1 245910699 245916209 + 0 NA intron (NM_001167740, intron 11 of 11) L2|LINE|L2 595167 NM_018012 55083 Hs.143134 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding nan 1.125 nan 0.187 0.390 0.331 0.418 0.455 0.174 0.177 0.164 0.180 0.376 0.100 0.097 1.218 0.674 12.028 2.219 0.731 0.693 0.569 0.255 3.643 3.078 0.351 0.573 0.408 0.443 0.367 0.236 0.304 0.455 0.073 0.182 0.438 0.765 0.467 0.351 0.082 0.226 0.018 0.048 0.418 0.180 0.052 0.037 0.252 0.223 1553 chr7 13933848 13950921 + 0 NA intron (NM_004956, intron 12 of 13) intron (NM_004956, intron 12 of 13) 83755 NM_001163152 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding nan 1.494 nan 0.186 1.098 0.586 0.554 0.622 0.056 1.829 0.966 0.762 1.974 0.072 0.122 nan 0.686 2.048 2.232 0.722 0.885 1.093 0.441 0.330 0.364 0.923 1.247 0.727 0.560 0.278 0.114 0.330 0.243 2.316 3.457 0.224 0.274 0.719 0.469 0.081 0.346 0.568 0.116 0.554 0.762 0.062 0.179 0.052 0.109 312 chr11 13348452 13360976 + 0 NA intron (NM_001297719, intron 3 of 19) AluSx|SINE|Alu 55440 NM_001178 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 0.806 nan 0.847 2.391 1.483 0.869 1.478 1.112 0.115 0.603 0.320 1.142 3.323 0.074 0.083 nan 0.696 0.758 1.207 2.498 2.592 1.038 0.263 0.608 0.685 0.717 nan 2.007 2.183 0.496 0.320 0.420 0.601 1.802 2.335 0.213 0.448 1.464 nan 4.585 1.703 0.496 0.158 1.478 1.142 0.046 0.212 0.142 0.049 1565 chr7 27134606 27157790 + 0 NA 3' UTR (NM_030661, exon 3 of 3) 3' UTR (NM_030661, exon 3 of 3) -3804 NM_006735 3199 Hs.445239 NM_006735 ENSG00000105996 HOXA2 HOX1K|MCOHI homeobox A2 protein-coding 2.211 1.373 1.104 0.308 0.912 0.547 0.503 0.240 0.035 0.531 0.325 0.560 1.407 2.695 0.169 12.954 18.729 6.530 nan 1.152 1.252 1.206 0.388 2.027 1.981 1.222 1.835 1.630 1.686 1.177 1.104 3.845 8.003 2.455 1.692 0.349 nan 0.985 0.585 0.453 0.845 1.071 1.542 0.503 0.560 0.169 0.018 3.092 0.225 1797 chrX 153230983 153241626 + 0 NA TTS (NR_046608) TTS (NR_046608) 515 NM_005334 3054 Hs.83634 NM_005334 ENSG00000172534 HCFC1 CFF|HCF|HCF-1|HCF1|HFC1|MRX3|PPP1R89|VCAF host cell factor C1 protein-coding 5.075 4.125 5.811 3.792 9.214 4.585 6.320 1.379 0.091 1.383 0.559 4.580 8.689 1.877 0.043 8.162 8.210 4.513 6.273 10.214 9.679 6.886 5.155 15.622 16.585 2.598 3.462 6.692 9.831 9.043 9.738 4.366 6.228 4.756 5.613 7.942 5.863 2.418 1.419 4.007 9.378 1.152 4.110 6.320 4.580 1.207 1.830 2.052 2.610 1366 chr5 2728474 2762778 + 0 NA TTS (NM_001134222) TTS (NM_001134222) 6143 NM_001134222 153572 Hs.282089 NM_033267 ENSG00000170561 IRX2 IRXA2 iroquois homeobox 2 protein-coding 0.355 0.765 0.727 0.095 1.092 0.636 0.811 0.119 0.146 0.097 0.144 9.003 1.648 0.389 0.119 0.267 0.162 0.219 nan 6.451 5.907 0.071 0.040 0.048 0.040 0.128 0.264 nan 0.133 nan 2.042 0.862 1.713 0.048 0.077 0.178 0.188 0.131 nan 1.088 1.006 0.016 1.581 0.811 9.003 0.232 0.018 0.508 0.022 1493 chr6 44663650 44684171 + 0 NA Intergenic Intergenic -154292 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 1.328 0.889 1.103 0.133 0.185 0.093 0.274 0.170 0.070 0.076 0.090 0.093 0.321 0.042 0.126 0.448 0.303 0.283 0.532 0.301 0.412 0.121 0.098 0.245 0.324 0.134 0.268 0.313 nan 0.595 0.398 0.216 0.322 0.102 0.103 1.517 5.141 0.458 0.533 0.149 0.134 0.023 0.089 0.274 0.093 0.039 0.091 2.092 961 chr19 42235540 42307256 + 0 NA intron (NM_002483, intron 5 of 5) intron (NM_002483, intron 5 of 5) 11970 NM_002483 4680 Hs.466814 NM_002483 ENSG00000086548 CEACAM6 CD66c|CEAL|NCA carcinoembryonic antigen related cell adhesion molecule 6 protein-coding 0.860 2.659 0.722 1.960 5.285 2.760 0.104 0.059 0.087 0.449 0.202 2.365 4.357 0.054 0.120 0.248 0.147 0.097 0.131 0.304 0.376 1.896 0.494 0.221 0.219 0.210 0.384 4.671 4.884 0.410 0.147 0.160 0.222 2.449 2.702 0.194 0.335 3.450 1.710 6.017 2.497 0.805 0.036 0.104 2.365 0.035 0.262 0.045 0.069 729 chr17 2344772 2370040 + 0 NA intron (NM_024086, intron 6 of 9) L1MC4|LINE|L1 -38676 NR_028335 284009 Hs.632244 NM_001025459 LOC284009 - uncharacterized LOC284009 ncRNA 1.339 0.844 0.910 0.175 0.343 0.262 0.209 0.200 0.115 0.087 0.128 0.275 0.768 0.086 0.099 0.390 0.418 0.227 0.373 0.577 0.790 0.511 0.265 0.377 0.378 0.743 1.110 0.769 0.880 1.972 1.500 0.174 0.193 0.242 0.423 1.021 4.044 0.635 0.355 0.501 1.033 0.079 0.400 0.209 0.275 0.407 0.064 0.051 1.313 1414 chr5 90932525 90941415 + 0 NA Intergenic Intergenic -257780 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding nan 5.093 0.566 0.079 0.247 0.251 0.188 0.160 0.127 0.035 0.047 0.291 0.061 0.121 0.235 0.133 1.886 0.437 0.288 0.407 0.333 0.121 0.162 0.180 0.446 0.472 0.303 0.333 0.547 0.140 0.079 0.186 0.148 0.182 0.242 nan 0.564 0.351 0.013 0.050 0.010 0.018 0.188 0.332 0.044 0.112 1666 chr8 99075809 99098483 + 0 NA intron (NM_001170806, intron 1 of 1) L1MC3|LINE|L1 10396 NM_001170806 203111 Hs.171455 NM_173549 ENSG00000177459 ERICH5 C8orf47 glutamate rich 5 protein-coding nan 0.915 1.279 2.474 0.966 0.464 0.197 0.158 0.171 0.381 0.408 0.876 1.423 0.147 0.104 0.220 0.178 0.297 nan 1.112 1.013 7.424 2.639 0.530 0.538 0.238 0.447 2.587 3.272 0.441 0.198 0.397 0.401 2.140 1.403 0.401 0.925 2.478 1.023 0.034 0.208 0.596 0.073 0.197 0.876 0.013 0.640 0.101 0.239 684 chr16 3173142 3186587 + 0 NA intron (NR_110900, intron 3 of 5) ERVL-B4-int|LTR|ERVL 5019 NR_110900 100507458 Hs.522143 NR_110900 ZNF213-AS1 - ZNF213 antisense RNA 1 (head to head) ncRNA 2.706 nan 2.149 2.694 2.383 1.180 2.067 0.677 0.324 0.896 0.502 1.124 6.022 1.320 0.130 2.681 2.432 1.341 2.028 2.639 2.474 nan 2.358 3.961 4.366 1.626 nan 2.427 3.433 2.484 2.258 1.192 1.753 2.450 2.548 1.893 2.123 2.256 1.072 1.130 2.885 0.374 0.872 2.067 1.124 0.797 0.985 0.405 0.494 999 chr19 59048406 59058200 + 0 NA promoter-TSS (NM_001316980) promoter-TSS (NM_001316980) -224 NM_001316980 84878 Hs.515662 NM_032792 ENSG00000119574 ZBTB45 ZNF499 zinc finger and BTB domain containing 45 protein-coding 2.904 1.770 2.444 2.447 5.194 2.620 2.992 0.930 0.330 0.980 0.471 4.277 4.119 1.897 0.115 4.586 6.196 2.197 3.127 5.095 4.723 7.689 3.496 2.502 2.684 1.771 2.571 2.571 4.195 4.230 3.969 2.545 3.860 3.533 3.005 3.585 4.120 2.623 1.389 1.933 2.426 0.743 1.988 2.992 4.277 1.152 0.858 1.220 1.466 531 chr13 50150773 50174324 + 0 NA Intergenic Intergenic -2829 NM_018191 55213 Hs.508021 NM_018191 ENSG00000136144 RCBTB1 CLLD7|CLLL7|GLP|RDEOA RCC1 and BTB domain containing protein 1 protein-coding 1.336 nan nan 0.627 0.354 0.143 0.349 0.413 0.144 0.245 0.163 0.686 0.562 0.341 0.076 2.166 1.835 0.750 0.725 1.434 1.399 nan 0.596 0.818 0.778 0.483 0.700 1.077 1.438 0.850 0.639 1.869 2.986 0.336 0.289 2.074 nan 0.389 0.280 0.281 0.516 0.044 0.170 0.349 0.686 0.166 0.156 1.564 0.905 343 chr11 57069871 57104245 + 0 NA intron (NM_033396, intron 3 of 11) AluSq2|SINE|Alu 5355 NM_033396 85456 Hs.530730 NM_033396 ENSG00000149115 TNKS1BP1 TAB182 tankyrase 1 binding protein 1 protein-coding 1.335 1.220 1.208 1.355 1.304 0.846 1.307 1.295 0.121 0.625 0.326 1.844 2.765 1.507 0.121 2.252 2.357 1.705 2.606 3.285 3.367 1.741 0.875 2.437 2.320 1.434 1.999 3.483 4.371 1.407 1.351 1.196 1.985 1.185 1.112 1.028 1.914 1.681 0.728 1.271 1.259 0.304 0.466 1.307 1.844 0.656 1.234 0.602 0.351 661 chr15 72518134 72525298 + 0 NA intron (NM_001206798, intron 1 of 10) MIRc|SINE|MIR 347 NM_001206799 5315 Hs.534770 NM_002654 ENSG00000067225 PKM CTHBP|HEL-S-30|OIP3|PK3|PKM2|TCB|THBP1 pyruvate kinase, muscle protein-coding 4.108 3.461 4.261 2.233 6.037 3.132 3.801 4.661 0.746 2.384 1.907 4.856 10.236 3.374 0.088 2.994 3.853 4.525 8.186 7.874 6.216 4.211 1.247 3.090 3.108 3.636 5.037 4.113 5.683 7.571 14.133 2.311 4.718 2.815 3.137 6.666 6.298 1.714 1.003 1.954 3.729 0.716 2.005 3.801 4.856 1.666 2.449 1.647 2.827 286 chr10 124891741 124916470 + 0 NA Intergenic Intergenic -3533 NM_005519 3167 Hs.444756 NM_005519 ENSG00000188816 HMX2 H6L|Nkx5-2 H6 family homeobox 2 protein-coding nan 0.959 0.777 0.700 3.178 1.653 0.714 0.629 0.137 0.282 0.146 2.029 1.916 0.981 0.088 10.109 16.917 7.332 9.026 1.446 1.118 2.516 1.065 0.805 0.862 0.730 1.033 1.105 1.399 0.717 0.746 5.543 12.880 0.381 0.541 0.363 0.690 0.587 0.338 0.546 0.391 0.084 0.421 0.714 2.029 0.181 0.456 4.261 0.199 699 chr16 30062844 30088856 + 0 NA promoter-TSS (NM_001127617) promoter-TSS (NM_001127617) 32 NM_001127617 226 Hs.513490 NM_000034 ENSG00000149925 ALDOA ALDA|GSD12|HEL-S-87p aldolase, fructose-bisphosphate A protein-coding 2.821 2.126 2.037 3.544 3.599 1.930 2.397 1.073 0.304 0.931 0.558 2.562 8.183 1.524 0.098 2.033 2.567 2.232 3.449 3.317 3.010 4.967 2.362 4.002 3.971 2.095 2.815 5.170 7.092 3.655 3.865 1.680 2.723 3.244 3.591 2.045 3.358 1.855 1.012 3.864 1.718 0.891 1.343 2.397 2.562 0.867 2.590 1.180 1.641 1650 chr8 61669501 61724337 + 0 NA intron (NM_017780, intron 3 of 37) intron (NM_017780, intron 3 of 37) 43101 NM_001316690 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 1.846 1.327 1.742 1.815 3.045 1.640 1.615 0.078 0.071 1.019 0.603 5.242 1.824 0.075 0.077 0.352 0.338 0.573 0.513 3.286 4.199 4.038 1.826 0.153 0.122 1.095 nan 2.535 2.555 nan 1.448 0.344 0.569 2.094 4.327 1.124 3.349 2.718 1.372 0.635 1.978 0.610 0.625 1.615 5.242 3.955 1.388 0.233 1.011 511 chr12 122005772 122021335 + 0 NA intron (NM_032590, intron 3 of 22) intron (NM_032590, intron 3 of 22) 4811 NM_001005366 84678 Hs.524800 NM_032590 ENSG00000089094 KDM2B CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2 lysine demethylase 2B protein-coding 1.750 1.371 1.456 0.926 2.774 1.351 1.278 0.785 0.105 0.671 0.455 1.275 2.322 1.713 0.108 0.915 1.610 2.353 2.625 4.221 3.422 nan 0.638 1.604 1.796 1.752 2.369 2.085 3.537 1.560 1.410 1.475 2.255 1.144 0.970 1.029 1.821 2.432 1.409 3.971 9.140 0.296 0.561 1.278 1.275 0.571 0.996 1.108 0.542 266 chr10 32034775 32050534 + 0 NA Intergenic Intergenic 155200 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 2.002 1.733 2.374 0.473 1.515 0.937 1.104 1.161 0.317 1.544 0.596 1.207 5.434 0.370 0.079 0.722 1.344 0.703 nan 2.886 2.521 3.293 1.069 1.921 1.857 3.327 4.494 0.853 1.609 1.627 1.801 0.459 0.662 2.280 1.988 1.065 1.379 2.502 1.182 2.851 0.681 0.708 1.243 1.104 1.207 0.857 2.142 0.359 0.500 1487 chr6 41421113 41428474 + 0 NA Intergenic Intergenic -45389 NR_120347 103106903 Hs.563396 NR_120347 ENSG00000226917 LINC01276 - long intergenic non-protein coding RNA 1276 ncRNA 1.829 1.232 1.405 1.574 2.575 1.155 1.002 0.131 0.111 0.957 0.322 6.815 1.640 0.059 0.078 0.705 0.957 0.288 0.585 4.798 4.952 5.936 3.742 0.397 0.397 0.112 0.264 7.037 8.421 0.507 0.282 0.506 1.191 3.127 1.798 0.202 0.575 3.211 2.021 0.173 0.701 0.786 0.151 1.002 6.815 0.074 0.844 0.633 0.055 758 chr17 27907473 27931760 + 0 NA promoter-TSS (NM_152345) promoter-TSS (NM_152345) -911 NM_152345 124930 Hs.662164 NM_152345 ENSG00000198720 ANKRD13B - ankyrin repeat domain 13B protein-coding nan nan nan 0.502 2.856 1.437 2.249 0.571 0.124 0.467 0.306 1.488 3.812 2.650 0.153 2.863 3.983 1.340 2.098 2.190 1.899 2.812 0.876 2.231 2.224 1.828 2.670 2.933 4.045 3.912 4.504 1.775 3.688 1.699 1.276 2.119 nan 1.199 0.760 2.151 1.031 0.472 0.707 2.249 1.488 1.606 1.092 1.777 1.855 395 chr11 111131952 111209578 + 0 NA promoter-TSS (NM_001302648) promoter-TSS (NM_001302648) -4 NM_001302647 399948 Hs.729225 NM_207429 COLCA1 C11orf92|CASC12|LOH11CR1F colorectal cancer associated 1 protein-coding 1.007 2.133 1.380 0.317 2.770 1.438 0.323 0.377 0.083 0.633 0.520 1.889 3.329 0.065 0.114 3.367 nan 9.254 11.892 2.040 2.351 1.320 0.339 1.392 1.397 2.599 nan 1.640 1.370 0.876 0.556 2.045 3.432 2.840 3.469 0.302 0.871 1.210 0.781 2.429 0.232 1.204 0.299 0.323 1.889 0.742 0.787 2.292 0.170 140 chr1 155655988 155684859 + 0 NA intron (NM_033657, intron 1 of 12) SVA_F|Other|Other 11538 NM_033657 7818 Hs.516746 NM_004632 ENSG00000132676 DAP3 DAP-3|MRP-S29|MRPS29|bMRP-10 death associated protein 3 protein-coding nan nan 2.068 0.938 1.020 0.444 1.225 1.068 0.260 0.838 0.530 1.148 3.691 0.996 0.165 1.772 1.799 2.085 3.143 2.344 nan 2.043 1.123 2.069 2.120 1.293 1.851 1.569 2.622 1.711 1.750 2.660 3.968 1.093 1.464 4.246 7.617 0.864 0.548 0.757 1.858 0.332 0.621 1.225 1.148 0.361 1.179 1.221 2.599 69 chr1 42792635 42811991 + 0 NA promoter-TSS (NM_001198850) promoter-TSS (NM_001198850) -765 NM_001198850 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 19.941 3.672 nan 5.896 6.993 3.401 1.838 0.771 0.167 4.244 2.020 11.308 9.114 0.964 0.134 0.887 1.045 1.151 1.787 6.202 6.914 5.777 2.219 2.379 2.373 2.448 nan nan 11.039 2.725 2.472 1.762 nan 3.043 3.785 4.032 9.031 3.977 1.736 6.337 3.603 1.180 0.962 1.838 11.308 0.387 2.433 0.917 3.914 274 chr10 71805372 71814734 + 0 NA Intergenic MIR|SINE|MIR -2304 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 3.529 nan 4.725 0.271 3.216 1.598 1.211 0.081 0.085 1.332 0.740 3.229 2.693 2.092 0.148 4.787 5.022 9.140 7.660 3.669 3.811 5.053 1.622 2.507 2.678 0.079 0.228 4.599 nan 1.728 1.611 2.469 4.959 1.829 1.108 0.094 nan 1.383 0.974 0.991 0.797 0.164 1.164 1.211 3.229 0.426 0.044 1.482 0.028 1627 chr8 28724239 28764568 + 0 NA intron (NM_001145159, intron 1 of 15) MIRb|SINE|MIR 3029 NM_001172562 55756 Hs.162397 NM_018250 ENSG00000104299 INTS9 CPSF2L|INT9|RC74 integrator complex subunit 9 protein-coding nan 1.143 nan 0.366 0.635 0.382 0.426 0.508 0.107 0.367 0.201 0.532 2.055 0.557 0.111 1.220 1.103 1.092 1.195 nan 1.617 nan 0.459 1.263 1.311 0.622 0.802 0.790 1.015 1.077 1.073 0.387 0.766 0.779 0.914 2.253 4.924 nan nan 0.310 0.398 0.210 0.130 0.426 0.532 0.109 0.374 0.302 1.410 1080 chr2 176030181 176036036 + 0 NA promoter-TSS (NR_045772) promoter-TSS (NR_045772) -174 NM_001256090 1386 Hs.592510 NM_001880 ENSG00000115966 ATF2 CRE-BP1|CREB-2|CREB2|HB16|TREB7 activating transcription factor 2 protein-coding 4.405 2.648 2.805 2.952 3.838 2.132 2.334 2.349 0.193 1.197 0.851 2.546 9.572 2.347 0.112 2.368 3.404 4.250 5.048 4.789 4.218 3.870 1.908 8.918 9.015 3.421 3.969 9.601 18.325 5.628 5.627 2.016 4.183 2.100 2.121 6.141 5.876 1.563 0.806 2.855 2.003 0.409 1.666 2.334 2.546 0.761 0.771 1.538 2.131 488 chr12 58276417 58299842 + 0 NA Intergenic Intergenic 41818 NR_038269 100506844 Hs.90286 NR_038269 LOC100506844 - uncharacterized LOC100506844 ncRNA nan 2.247 1.200 1.774 2.377 1.136 0.743 1.927 0.318 3.623 1.644 4.644 2.453 0.426 0.099 nan 2.199 0.934 2.307 4.580 nan 3.595 1.548 0.660 0.700 1.436 nan 5.624 nan 2.111 1.860 0.787 1.504 1.663 1.441 0.557 1.143 6.354 2.855 0.928 4.053 0.265 0.393 0.743 4.644 0.708 1.257 0.911 0.327 1147 chr20 24940620 24954992 + 0 NA intron (NM_020531, intron 8 of 8) AluSx3|SINE|Alu 17940 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 1.666 1.440 nan 0.146 0.176 0.111 0.170 0.157 0.100 0.190 0.120 0.283 0.442 0.062 0.080 0.633 0.722 0.354 0.367 0.885 0.788 0.551 0.192 0.433 0.427 0.557 0.839 1.370 1.691 5.654 5.266 0.328 0.502 0.309 0.361 1.701 3.889 1.040 0.751 0.116 0.154 0.073 0.050 0.170 0.283 1.014 0.105 0.048 2.125 1507 chr6 99271468 99296397 + 0 NA exon (NM_005604, exon 1 of 1) exon (NM_005604, exon 1 of 1) 1352 NM_005604 5454 Hs.182505 NM_005604 ENSG00000184486 POU3F2 BRN2|N-Oct3|OCT7|OTF-7|OTF7|POUF3|brn-2|oct-7 POU class 3 homeobox 2 protein-coding nan 1.873 nan 3.327 4.449 2.367 1.293 0.123 0.058 1.129 0.786 1.723 6.888 0.139 0.099 1.413 2.094 0.997 1.201 2.139 1.412 nan 1.149 0.939 0.932 1.166 nan 1.494 2.717 nan 2.461 0.909 2.435 0.929 0.603 0.673 1.081 1.120 0.706 0.405 2.364 0.149 0.248 1.293 1.723 0.019 1.093 0.944 0.486 1706 chr9 2014025 2018947 + 0 NA intron (NM_003070, intron 1 of 33) CpG 1267 NM_139045 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 3.352 9.046 4.898 2.496 3.129 1.568 3.831 2.414 0.390 1.546 1.022 3.768 16.575 0.199 0.050 2.012 3.469 5.274 7.743 6.189 4.081 4.833 1.656 11.674 10.716 3.462 5.196 1.711 3.437 5.032 8.451 2.118 6.344 2.025 2.578 0.819 nan 3.122 2.547 0.406 7.772 0.542 4.545 3.831 3.768 2.388 1.867 2.653 0.725 1727 chr9 22446065 22458610 + 0 NA 3' UTR (NM_022160, exon 2 of 2) 3' UTR (NM_022160, exon 2 of 2) 5497 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 1.764 nan nan 0.433 0.168 0.115 0.531 0.749 0.174 0.585 0.313 0.143 0.563 0.529 0.083 0.183 0.098 0.544 1.164 0.689 0.766 1.876 0.504 0.062 0.062 3.431 4.152 0.116 0.145 1.207 1.004 0.164 0.247 3.656 3.468 0.425 0.952 3.694 1.758 0.013 0.310 0.993 1.071 0.531 0.143 0.016 0.605 0.063 0.351 907 chr18 77000316 77023871 + 0 NA intron (NM_198531, intron 11 of 29) MIRb|SINE|MIR -143679 NM_172388 4772 Hs.534074 NM_006162 ENSG00000131196 NFATC1 NF-ATC|NF-ATc1.2|NFAT2|NFATc nuclear factor of activated T-cells 1 protein-coding nan nan 0.632 0.415 0.376 0.215 0.376 0.108 0.034 0.387 0.203 0.498 0.594 0.126 0.075 0.403 0.276 0.460 0.914 0.674 nan 10.800 4.757 0.840 0.882 0.192 0.336 0.707 nan 0.351 0.200 0.151 0.259 0.821 1.648 0.204 0.275 1.280 0.680 0.053 0.114 0.142 0.067 0.376 0.498 0.054 0.182 0.027 0.068 1540 chr7 1326483 1331996 + 0 NA Intergenic Intergenic 56585 NM_001080461 340260 Hs.232272 NM_001080461 ENSG00000164853 UNCX UNCX4.1 UNC homeobox protein-coding 3.704 0.707 10.823 0.176 0.490 0.145 0.444 0.069 0.133 0.132 0.348 nan 0.746 0.125 0.214 0.243 0.096 nan 1.218 0.753 nan 0.101 0.476 0.439 0.285 0.410 nan 0.230 1.214 0.958 0.246 0.334 0.288 0.369 0.106 0.066 0.702 0.363 0.404 0.045 0.070 0.047 0.444 0.348 3.454 0.186 0.072 0.089 829 chr17 78448190 78476354 + 0 NA Intergenic G-rich|Low_complexity|Low_complexity -11868 NM_002522 4884 Hs.514556 NM_002522 ENSG00000171246 NPTX1 NP1 neuronal pentraxin 1 protein-coding 1.241 0.973 2.425 2.130 0.793 0.355 1.284 0.090 0.080 0.230 0.147 5.060 2.332 0.127 0.088 0.618 0.667 0.246 0.323 4.438 3.453 2.048 0.544 0.289 0.326 nan 1.358 2.315 3.803 1.211 1.291 0.554 0.668 0.505 0.409 2.202 3.311 nan 0.699 1.187 2.001 0.064 1.079 1.284 5.060 0.341 0.869 0.219 1.549 701 chr16 30568139 30587111 + 0 NA Intergenic Intergenic 6103 NM_001024683 146542 Hs.301463 NM_145271 ENSG00000229809 ZNF688 - zinc finger protein 688 protein-coding 2.971 1.998 1.963 4.239 2.728 1.251 2.101 0.662 0.268 0.559 0.413 2.611 6.578 1.122 0.109 2.552 2.487 1.423 2.311 3.120 2.929 4.771 1.909 4.246 4.457 1.889 2.514 4.906 6.792 3.794 3.659 1.882 2.493 2.849 2.923 2.279 3.476 1.771 1.077 1.848 1.607 0.657 1.192 2.101 2.611 1.099 1.319 0.712 1.012 446 chr12 11945137 11977419 + 0 NA intron (NM_001987, intron 2 of 7) intron (NM_001987, intron 2 of 7) 158490 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 0.938 1.144 1.751 4.335 2.763 1.529 0.360 0.333 0.070 1.730 0.999 3.281 2.776 0.102 0.115 0.222 0.192 2.344 3.049 nan 2.936 10.427 4.922 1.283 1.449 0.770 1.161 4.353 5.825 0.558 0.443 0.282 0.390 0.494 0.578 0.306 0.557 1.951 1.033 0.343 0.387 0.106 0.042 0.360 3.281 0.057 0.330 0.064 0.118 1178 chr20 60775474 60803472 + 0 NA TTS (NM_007232) TTS (NM_007232) 5850 NM_007232 11255 Hs.251399 NM_007232 ENSG00000101180 HRH3 GPCR97|HH3R histamine receptor H3 protein-coding 0.877 1.093 0.627 0.571 2.154 1.163 1.012 0.072 0.098 1.089 0.739 0.738 5.631 0.082 0.071 1.550 nan 0.107 0.179 1.135 1.098 2.212 0.716 0.476 0.594 0.395 0.645 2.242 1.959 0.497 0.376 0.606 0.761 0.248 0.268 0.477 0.599 2.378 1.234 0.627 2.016 0.051 0.110 1.012 0.738 0.236 1.353 0.197 0.092 935 chr19 18051964 18064110 + 0 NA Intergenic Intergenic -4074 NM_002248 3780 Hs.158173 NM_002248 ENSG00000105642 KCNN1 KCa2.1|SK1|SKCA1|hSK1 potassium calcium-activated channel subfamily N member 1 protein-coding 2.553 1.375 1.675 0.730 3.637 1.850 1.694 0.202 0.080 0.323 0.252 2.795 2.226 0.502 0.094 0.974 1.086 0.456 0.656 7.382 5.903 1.983 0.680 0.479 0.460 1.305 1.687 1.943 3.887 4.035 3.697 0.319 0.399 2.747 2.131 4.072 6.061 1.341 0.767 4.197 2.158 0.558 1.058 1.694 2.795 2.204 0.223 0.138 2.796 219 chr1 224031578 224035164 + 0 NA exon (NM_001031685, exon 1 of 18) exon (NM_001031685, exon 1 of 18) 303 NM_005426 7159 Hs.523968 NM_005426 ENSG00000143514 TP53BP2 53BP2|ASPP2|BBP|P53BP2|PPP1R13A tumor protein p53 binding protein 2 protein-coding 10.099 7.357 9.405 10.795 6.487 3.627 7.650 5.056 0.615 4.775 1.967 6.276 15.582 4.399 0.178 11.073 9.256 14.337 21.402 15.570 nan 8.967 4.215 26.259 26.870 5.110 6.435 10.615 18.196 7.230 7.634 2.915 5.477 8.182 7.117 10.787 8.066 4.247 2.893 5.516 2.647 1.070 3.362 7.650 6.276 1.522 2.872 0.913 2.966 259 chr10 13194716 13212333 + 0 NA promoter-TSS (NM_018518) promoter-TSS (NM_018518) -30 NM_018518 55388 Hs.198363 NM_018518 ENSG00000065328 MCM10 CNA43|DNA43|PRO2249 minichromosome maintenance 10 replication initiation factor protein-coding nan 0.776 0.795 0.427 0.579 0.237 0.348 0.385 0.137 0.233 0.202 0.367 0.794 0.259 0.097 1.197 0.768 0.873 1.276 0.751 0.679 5.089 1.897 0.816 0.770 0.830 1.274 0.850 1.400 0.545 0.549 0.380 0.510 0.791 1.056 0.820 0.802 1.366 0.695 0.111 0.550 0.131 0.202 0.348 0.367 0.132 0.178 0.079 0.105 1593 chr7 101761141 101769667 + 0 NA intron (NM_181500, intron 8 of 22) intron (NM_181500, intron 8 of 22) -162949 NM_020979 10603 Hs.489448 NM_020979 ENSG00000160999 SH2B2 APS SH2B adaptor protein 2 protein-coding nan 0.553 0.758 0.372 0.422 0.217 0.239 0.466 0.131 0.386 0.194 0.203 0.424 0.189 0.144 2.946 3.696 7.062 8.962 0.370 0.514 2.301 0.668 0.232 0.259 0.407 0.858 1.291 1.004 0.401 0.215 2.078 2.757 0.136 0.246 0.269 nan 1.312 0.690 0.165 0.198 0.034 0.249 0.239 0.203 0.069 0.262 1.175 0.186 1324 chr4 666625 677720 + 0 NA intron (NM_002477, intron 1 of 6) intron (NM_002477, intron 1 of 6) 461 NM_002477 4636 Hs.410970 NM_002477 ENSG00000215375 MYL5 - myosin light chain 5 protein-coding 1.477 1.032 nan 2.473 1.633 0.831 1.431 0.553 0.116 1.071 0.469 1.779 2.735 1.145 0.063 1.709 2.259 1.950 2.763 1.792 1.690 nan 1.695 2.861 3.051 0.707 0.901 1.521 2.387 1.346 1.241 1.500 1.997 0.743 0.542 1.088 1.383 nan 1.405 0.530 4.140 0.134 1.645 1.431 1.779 0.350 0.820 0.569 0.731 1614 chr7 129353992 129369883 + 0 NA intron (NM_001040110, intron 9 of 10) intron (NM_001040110, intron 9 of 10) 48395 NR_029614 406958 NR_029614 ENSG00000207990 MIR182 MIRN182|miRNA182|mir-182 microRNA 182 ncRNA 1.068 0.664 0.953 1.272 1.178 0.525 0.274 0.249 0.081 0.404 0.252 1.687 0.610 0.116 0.145 0.760 0.749 0.348 0.419 0.872 1.146 4.837 1.563 0.487 0.382 0.450 0.610 1.648 1.283 0.423 0.230 0.493 0.831 0.897 1.477 0.397 0.935 1.545 1.000 0.115 0.447 0.096 0.649 0.274 1.687 0.595 0.659 0.205 0.202 1156 chr20 35847851 35905684 + 0 NA Intergenic L2a|LINE|L2 8544 NM_001184731 2691 Hs.37023 NM_021081 ENSG00000118702 GHRH GHRF|GRF|INN growth hormone releasing hormone protein-coding 1.146 1.852 1.080 1.647 3.689 1.886 2.585 0.225 0.153 0.226 0.159 0.765 2.565 0.111 0.103 0.828 1.194 0.296 0.434 3.169 nan 4.632 1.119 0.658 0.629 0.514 0.823 0.461 0.560 0.789 0.542 0.435 0.505 0.755 0.551 0.491 nan 0.746 0.469 1.071 0.767 0.222 1.395 2.585 0.765 0.313 0.244 0.073 0.226 924 chr19 12880074 12918971 + 0 NA Intergenic Intergenic 1580 NR_049864 100847071 NR_049864 ENSG00000263800 MIR5684 - microRNA 5684 ncRNA 4.994 2.753 3.803 2.957 2.524 1.168 3.006 2.163 0.373 1.441 0.688 2.725 2.185 3.281 0.129 2.417 2.979 2.728 4.145 4.737 4.525 6.959 3.363 4.338 4.541 2.271 3.265 4.084 6.073 4.575 4.192 1.033 1.593 4.431 4.343 3.497 6.013 2.987 1.467 4.005 1.964 1.518 1.216 3.006 2.725 1.355 2.629 0.856 2.114 317 chr11 18081403 18095710 + 0 NA Intergenic Arthur1A|DNA|hAT-Tip100 -26221 NM_004179 7166 Hs.591999 NM_004179 ENSG00000129167 TPH1 TPRH|TRPH tryptophan hydroxylase 1 protein-coding 1.227 nan 2.872 3.596 1.226 0.506 0.135 0.100 0.067 2.139 0.750 0.536 0.987 0.030 0.110 nan 0.383 0.282 0.309 0.975 1.051 4.565 1.799 0.263 0.267 0.443 nan 2.345 3.575 1.945 1.777 0.216 0.335 7.997 9.203 1.393 5.056 5.130 nan 0.436 1.098 2.480 0.033 0.135 0.536 2.747 0.076 1.560 1075 chr2 166418933 166435318 + 0 NA intron (NM_001172173, intron 3 of 6) intron (NM_001172173, intron 3 of 6) -1721 NM_024969 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 0.995 1.173 nan 1.275 1.255 0.606 1.686 0.344 0.039 1.128 0.702 0.622 2.838 0.041 0.066 2.397 2.893 2.017 2.325 1.014 0.995 2.991 1.644 1.682 1.590 4.145 4.306 1.261 1.292 2.963 2.368 1.439 2.602 0.054 0.012 1.375 2.025 1.528 0.717 0.044 1.688 0.006 0.341 1.686 0.622 0.279 0.390 1.865 0.218 113 chr1 110648388 110681956 + 0 NA Intergenic LTR67B|LTR|ERVL 10110 NM_203412 164153 Hs.374027 NM_203412 ENSG00000186150 UBL4B - ubiquitin like 4B protein-coding nan 1.248 1.384 1.994 1.233 0.607 1.276 0.107 0.091 0.440 0.255 0.722 2.615 0.081 0.105 1.093 1.185 0.241 0.263 1.527 nan 5.036 2.450 0.385 0.407 0.339 0.669 4.486 5.092 0.532 0.383 0.760 0.808 0.835 1.207 0.200 0.276 1.492 0.991 0.923 1.145 0.176 0.171 1.276 0.722 0.160 1.887 0.463 0.029 1696 chr8 145114663 145120640 + 0 NA Intergenic Intergenic -2045 NM_017570 26873 Hs.305882 NM_017570 ENSG00000178814 OPLAH 5-Opase|OPLA|OPLAHD 5-oxoprolinase (ATP-hydrolysing) protein-coding 1.453 1.456 nan 1.741 1.219 0.632 1.283 0.640 0.215 0.238 0.065 2.164 1.088 1.221 0.065 0.785 0.986 0.190 0.405 nan 1.589 nan 0.398 1.567 1.458 0.508 0.780 1.374 1.882 0.721 0.697 1.384 1.202 0.515 0.395 1.310 2.209 0.898 0.525 0.205 1.441 0.032 0.121 1.283 2.164 1.004 5.144 0.368 0.827 780 chr17 38801129 38806144 + 0 NA intron (NM_003079, intron 1 of 10) MIRb|SINE|MIR 467 NM_003079 6605 Hs.743978 NM_003079 ENSG00000073584 SMARCE1 BAF57|CSS5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 protein-coding nan 4.899 4.433 2.684 9.727 5.218 4.179 3.331 0.097 3.292 1.956 7.231 10.621 2.820 0.107 11.700 10.853 10.949 13.817 nan 13.799 9.731 7.716 25.049 26.858 4.744 5.662 11.302 17.536 nan 11.364 8.915 12.134 7.348 7.522 10.288 4.730 4.000 2.481 4.519 3.891 0.908 2.152 4.179 7.231 1.666 2.595 1.916 2.027 1208 chr21 40307107 40382177 + 0 NA Intergenic LTR85a|LTR|Gypsy? 5058 NR_109962 101928435 Hs.385528 NR_109962 ENSG00000232837 LINC01700 - long intergenic non-protein coding RNA 1700 ncRNA nan 0.696 0.896 1.849 1.602 0.778 0.786 0.434 0.085 0.632 0.386 5.317 2.908 0.051 0.076 0.451 0.431 0.293 0.480 4.110 4.595 nan 0.786 0.289 0.284 0.136 nan 6.481 6.902 0.513 0.336 0.265 0.404 0.657 0.523 0.154 0.246 3.631 1.886 1.104 2.910 0.123 0.295 0.786 5.317 0.115 1.734 0.194 0.116 490 chr12 66111338 66138473 + 0 NA Intergenic Intergenic -88753 NR_120434 100507065 Hs.591038 NR_120431 LOC100507065 - uncharacterized LOC100507065 ncRNA 0.723 0.580 0.632 0.069 0.161 0.065 0.081 0.150 0.047 0.058 0.107 0.053 0.228 6.094 0.166 0.231 0.126 0.252 0.443 0.331 nan 0.116 0.060 0.136 0.129 0.156 0.237 0.405 0.504 0.775 0.624 0.196 0.316 0.035 0.056 0.752 1.304 0.185 0.332 0.008 0.049 0.007 0.041 0.081 0.053 0.018 0.019 0.070 0.475 281 chr10 115711079 115723532 + 0 NA Intergenic L1MB2|LINE|L1 -86501 NM_000684 153 Hs.99913 NM_000684 ENSG00000043591 ADRB1 ADRB1R|B1AR|BETA1AR|RHR adrenoceptor beta 1 protein-coding 0.676 nan 0.623 0.838 3.815 2.008 0.332 0.162 0.051 2.286 0.649 0.317 2.198 0.052 0.064 0.416 0.332 0.937 2.634 0.105 0.133 8.337 6.126 0.257 0.271 0.223 0.388 9.143 12.838 0.161 0.047 2.354 3.516 3.868 3.548 0.198 0.244 2.621 1.573 1.035 2.180 0.525 0.135 0.332 0.317 0.016 0.882 2.589 0.200 1098 chr2 205407152 205420168 + 0 NA intron (NM_205863, intron 1 of 21) intron (NM_205863, intron 1 of 21) 3144 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 1.199 nan 1.919 0.498 1.219 0.654 0.500 0.526 0.107 0.355 0.140 0.913 1.878 0.091 0.094 0.852 0.652 1.488 2.299 1.316 1.135 0.842 0.300 17.814 18.140 0.611 0.826 1.216 1.674 0.401 0.234 0.356 0.506 0.255 0.164 0.204 0.269 0.609 0.466 0.621 0.232 0.112 1.348 0.500 0.913 0.142 0.047 0.061 0.057 581 chr14 32669577 32674003 + 0 NA TTS (NR_125730).3 TTS (NR_125730).3 539 NR_125730 103625684 NR_125730 ENSG00000207357 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 9.131 2.929 4.082 8.754 5.105 2.583 4.945 7.477 0.403 2.009 1.330 4.637 11.638 2.697 0.210 2.739 4.640 2.407 4.064 11.040 11.388 6.827 4.794 7.786 8.358 5.226 6.304 6.829 11.417 18.173 18.684 4.275 5.578 6.924 6.015 7.915 7.605 4.733 3.724 2.283 3.100 0.560 5.071 4.945 4.637 1.605 3.951 0.892 2.757 1629 chr8 33453458 33458824 + 0 NA promoter-TSS (NM_001305116) promoter-TSS (NM_001305116) -826 NM_001305116 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 1.846 3.076 nan 2.951 2.119 0.721 5.555 0.097 0.061 2.983 1.405 3.991 5.364 0.042 0.132 1.035 2.123 1.537 1.837 13.777 12.677 8.229 2.976 0.300 0.451 1.644 2.103 3.580 4.049 6.977 10.248 1.522 2.157 4.809 2.410 0.842 1.711 7.754 4.741 4.274 4.142 0.745 1.064 5.555 3.991 2.043 1.693 1.144 0.563 1228 chr22 37857568 37888146 + 0 NA intron (NM_001166343, intron 4 of 6) intron (NM_001166343, intron 4 of 6) 9568 NM_001166343 4242 Hs.517603 NM_002405 ENSG00000100060 MFNG - MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase protein-coding 1.679 nan 0.588 0.070 0.347 0.157 0.548 0.124 0.120 0.087 0.068 0.271 0.775 0.117 0.110 3.230 4.117 0.221 0.279 1.211 0.778 0.469 0.132 0.617 0.671 0.203 nan 0.713 1.067 nan 1.719 1.195 1.509 0.170 0.252 0.285 0.454 0.295 0.335 0.770 1.117 0.053 1.575 0.548 0.271 1.661 0.623 0.649 0.036 1373 chr5 10282475 10311601 + 0 NA intron (NM_138809, intron 1 of 5) AluSz|SINE|Alu 11130 NM_138809 134147 Hs.192586 NM_138809 ENSG00000164237 CMBL JS-1 carboxymethylenebutenolidase homolog protein-coding nan nan nan 3.567 2.761 1.431 0.714 0.265 0.332 2.103 1.567 4.297 nan 0.317 0.147 0.341 0.214 0.540 0.767 4.814 4.775 3.254 0.791 0.266 0.230 nan 3.763 3.955 3.716 1.447 1.399 0.272 0.329 2.707 3.225 0.324 nan 4.100 2.107 2.332 2.098 0.746 0.344 0.714 4.297 0.467 0.763 0.085 0.161 1626 chr8 27471429 27511161 + 0 NA promoter-TSS (NM_016240) promoter-TSS (NM_016240) -282 NM_016240 51435 Hs.128856 NM_016240 ENSG00000168077 SCARA3 APC7|CSR|CSR1|MSLR1|MSRL1 scavenger receptor class A member 3 protein-coding nan 0.977 nan 0.112 0.194 0.089 0.522 0.087 0.077 0.039 0.090 0.069 0.217 0.415 0.103 0.396 0.402 0.223 0.341 nan 0.527 nan 0.397 0.172 0.195 0.289 0.477 0.224 0.261 1.155 0.686 0.231 0.279 0.200 0.521 1.321 3.925 nan nan 0.035 0.059 0.032 0.024 0.522 0.069 0.073 0.125 0.039 2.771 1562 chr7 26104004 26145661 + 0 NA Intergenic AluSx|SINE|Alu -67015 NM_004289 9603 Hs.404741 NM_004289 ENSG00000050344 NFE2L3 NRF3 nuclear factor, erythroid 2 like 3 protein-coding 1.564 1.059 1.495 0.141 0.335 0.185 0.852 0.104 0.127 0.136 0.143 0.132 0.450 0.104 0.159 0.624 0.490 0.245 nan 0.432 0.566 1.131 0.352 0.432 0.481 0.646 0.962 0.475 0.546 1.295 1.025 0.230 0.288 0.151 0.197 1.149 nan 0.394 0.401 0.164 0.158 0.039 0.130 0.852 0.132 0.102 0.042 0.055 1.305 619 chr14 96732096 96742446 + 0 NA Intergenic Intergenic 14724 NM_000710 623 Hs.525572 NM_000710 ENSG00000100739 BDKRB1 B1BKR|B1R|BDKRB2|BKB1R|BKR1|BRADYB1 bradykinin receptor B1 protein-coding 1.853 0.921 nan 0.336 0.397 0.141 0.446 2.186 0.244 0.124 0.093 0.798 2.845 0.074 0.115 0.347 0.226 0.278 0.907 1.633 1.600 0.864 0.252 0.583 0.606 0.726 0.952 1.432 1.371 2.467 2.297 0.241 0.334 1.357 1.306 0.150 0.255 nan 0.776 0.322 0.345 0.189 0.071 0.446 0.798 0.393 3.215 0.067 0.095 1732 chr9 36934716 36941941 + 0 NA intron (NR_104000, intron 6 of 9) intron (NR_104000, intron 6 of 9) -44800 NR_039687 100616456 NR_039687 ENSG00000265368 MIR4476 mir-4476 microRNA 4476 ncRNA 1.172 nan 3.009 0.072 1.041 0.553 0.442 0.112 0.067 1.532 0.811 1.060 0.427 0.076 0.120 0.192 0.317 0.192 0.324 0.862 1.391 3.135 0.960 0.145 0.189 0.641 1.061 0.282 0.666 0.435 0.278 0.291 0.510 7.710 8.172 0.580 1.972 0.910 0.756 0.046 0.171 3.459 0.177 0.442 1.060 0.034 0.014 0.111 0.512 235 chr1 239749802 239752771 + 0 NA intron (NM_001347716, intron 3 of 7) intron (NM_001347716, intron 3 of 7) -41087 NM_000740 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 0.801 1.485 1.602 0.393 0.371 0.320 1.045 0.073 0.052 0.230 0.202 0.327 0.111 0.116 5.553 3.695 19.595 4.697 0.264 0.322 nan 0.228 2.921 2.591 0.248 0.535 nan 0.203 0.304 0.150 1.044 2.403 0.058 0.033 0.210 0.325 nan 0.486 0.037 0.090 0.065 1.045 0.202 0.067 0.785 0.116 1677 chr8 119906899 119912638 + 0 NA Intergenic Intergenic 54615 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding nan nan 1.604 0.325 0.328 0.328 0.068 0.176 0.028 0.273 0.212 0.113 0.772 0.094 0.218 0.215 0.311 0.422 0.427 0.575 nan 1.821 0.720 nan 0.578 nan 0.583 0.375 0.409 0.209 0.166 0.346 1.378 3.840 0.281 0.733 1.265 0.642 0.010 0.124 0.545 0.013 0.068 0.113 4.492 0.087 0.086 1595 chr7 102131216 102158295 + 0 NA intron (NM_001277335, intron 5 of 19) AluJr|SINE|Alu 13469 NM_001277335 100271927 Hs.530089 NM_001277335 ENSG00000170667 RASA4B - RAS p21 protein activator 4B protein-coding nan 1.488 3.258 0.750 1.519 0.814 2.843 0.421 0.219 0.869 0.609 1.014 2.128 0.745 0.195 1.383 2.457 0.974 1.421 2.465 2.138 1.919 0.582 1.843 2.137 0.477 0.937 2.796 3.339 1.944 1.870 0.714 0.865 1.083 0.924 1.822 nan 1.652 0.952 0.661 3.081 0.492 0.404 2.843 1.014 0.991 1.435 0.550 0.735 1590 chr7 99002948 99008191 + 0 NA intron (NM_014891, intron 1 of 5) MIR|SINE|MIR 736 NM_014891 11333 Hs.632296 NM_014891 ENSG00000106244 PDAP1 HASPP28|PAP|PAP1 PDGFA associated protein 1 protein-coding nan 2.367 nan 4.784 5.448 3.271 4.891 3.780 0.122 5.016 2.041 4.578 6.922 7.328 0.215 7.607 7.184 6.333 9.126 7.854 7.825 7.959 5.862 13.579 15.059 4.786 6.006 5.372 7.862 8.281 8.110 7.494 10.358 6.998 7.971 7.508 nan 7.367 3.362 3.077 4.725 0.907 2.768 4.891 4.578 1.367 1.930 2.072 1.622 15 chr1 6319302 6349902 + 0 NA intron (NM_181866, intron 8 of 8) intron (NM_181866, intron 8 of 8) -13567 NM_207370 387509 Hs.531581 NM_207370 ENSG00000158292 GPR153 PGR1 G protein-coupled receptor 153 protein-coding 2.365 nan 2.385 1.652 0.809 0.403 0.807 0.195 0.063 0.154 0.167 0.638 1.111 0.301 0.109 1.716 2.590 0.461 0.678 1.712 1.532 0.707 0.391 0.909 1.001 0.781 nan nan 9.310 nan 0.575 1.191 1.929 0.317 0.357 1.084 2.008 0.427 0.415 0.500 1.479 0.031 0.495 0.807 0.638 1.207 1.299 1.423 0.897 305 chr11 12397673 12413892 + 0 NA intron (NM_018222, intron 1 of 12) intron (NM_018222, intron 1 of 12) 6756 NM_018222 55742 Hs.432914 NM_018222 ENSG00000197702 PARVA CH-ILKBP|MXRA2 parvin alpha protein-coding 1.398 nan 0.852 0.458 0.465 0.266 0.456 1.076 0.111 0.251 0.223 4.166 0.732 0.412 0.081 nan 1.072 1.361 2.044 1.412 1.487 1.854 0.632 2.538 2.369 0.543 nan 1.098 1.516 0.867 0.857 0.745 1.080 1.059 0.873 0.439 0.660 1.862 nan 0.410 0.300 0.316 0.215 0.456 4.166 0.163 0.006 0.220 0.107 1422 chr5 134811729 134849557 + 0 NA Intergenic Intergenic 40996 NM_006161 4762 Hs.248149 NM_006161 ENSG00000181965 NEUROG1 AKA|Math4C|NEUROD3|bHLHa6|ngn1 neurogenin 1 protein-coding 2.488 1.016 nan 0.123 0.690 0.331 1.754 0.081 0.093 0.096 0.077 2.726 1.320 0.057 0.088 0.284 0.279 0.351 0.979 3.183 3.419 2.246 0.549 0.176 0.248 1.805 2.283 0.397 0.379 2.772 3.005 0.168 0.359 1.080 0.680 1.162 3.820 0.508 0.368 0.340 2.597 0.282 1.245 1.754 2.726 0.961 0.043 0.136 1.903 60 chr1 38313482 38329224 + 0 NA intron (NM_005955, intron 2 of 10) AluSq|SINE|Alu 3939 NM_005955 4520 Hs.471991 NM_005955 ENSG00000188786 MTF1 MTF-1|ZRF metal regulatory transcription factor 1 protein-coding 1.896 nan 1.473 2.333 1.118 0.529 0.591 0.607 0.205 0.526 0.479 1.050 2.338 0.912 0.162 0.787 1.043 0.874 1.482 1.946 1.914 nan 0.578 1.838 1.934 1.750 2.291 7.468 8.438 nan 1.513 1.274 1.997 0.639 0.596 1.764 2.319 1.124 nan 0.466 0.600 0.031 0.349 0.591 1.050 0.265 0.389 0.452 0.515 768 chr17 36979281 36983577 + 0 NA promoter-TSS (NR_039880) promoter-TSS (NR_039880) 174 NR_073428 54883 Hs.406223 NM_017748 ENSG00000273559 CWC25 CCDC49 CWC25 spliceosome associated protein homolog protein-coding nan 3.894 3.298 2.533 7.262 4.066 3.815 2.496 0.262 2.286 1.001 4.065 7.979 2.203 0.138 6.149 4.987 7.644 11.588 nan 5.157 8.451 7.435 23.600 26.457 3.890 4.337 9.056 13.767 nan 6.793 2.937 3.390 7.611 8.186 12.499 11.406 3.267 2.516 2.436 2.058 0.648 1.671 3.815 4.065 1.789 2.238 1.153 2.678 810 chr17 69155470 69179810 + 0 NA intron (NR_104152, intron 2 of 3) intron (NR_104152, intron 2 of 3) 30680 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility candidate 17 (non-protein coding) ncRNA 1.116 nan 0.557 0.418 2.688 1.356 0.347 0.309 0.146 1.130 0.781 3.653 2.607 0.040 0.138 0.637 0.482 0.945 1.485 1.057 1.565 3.706 2.913 0.241 0.203 1.295 nan 0.554 0.696 0.449 0.217 0.682 1.369 1.928 2.588 0.134 0.189 2.276 0.965 0.408 2.140 0.430 0.093 0.347 3.653 0.103 0.138 1.834 0.031 210 chr1 212808034 212813990 + 0 NA Intergenic AluSp|SINE|Alu 13223 NM_153606 149647 Hs.129293 NM_153606 ENSG00000162771 FAM71A GARI-L4 family with sequence similarity 71 member A protein-coding 1.942 1.786 2.123 0.987 0.916 0.513 0.962 1.865 0.161 1.108 0.559 0.894 nan 0.073 0.113 0.469 0.324 13.725 3.953 2.282 1.629 nan 0.407 3.219 3.349 1.207 nan 5.020 2.870 0.896 1.070 0.133 0.267 1.056 1.327 0.869 2.553 2.267 1.517 0.483 0.135 0.193 0.013 0.962 0.894 0.359 2.219 0.114 0.627 1285 chr3 133074719 133083262 + 0 NA intron (NM_001282865, intron 2 of 3) L1ME1|LINE|L1 -39849 NM_003571 8419 Hs.659862 NM_003571 ENSG00000170819 BFSP2 CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN beaded filament structural protein 2 protein-coding 1.061 nan nan 0.174 0.644 0.262 0.241 0.374 0.188 0.351 0.285 0.144 0.277 0.013 0.093 1.214 0.961 8.137 1.603 0.472 0.647 1.782 0.590 0.706 0.876 0.423 0.761 0.258 0.321 nan 1.522 0.192 0.311 0.141 0.166 0.709 2.524 0.717 0.585 0.051 0.197 0.023 0.074 0.241 0.144 0.067 0.024 0.034 0.876 462 chr12 31158765 31164547 + 0 NA Intergenic Intergenic -65123 NM_001257144 1663 Hs.443960 NM_004399 ENSG00000013573 DDX11 CHL1|CHLR1|KRG2|WABS DEAD/H-box helicase 11 protein-coding 2.572 nan 3.563 0.213 0.211 0.166 0.072 0.066 0.056 0.162 0.074 0.097 0.358 0.044 0.091 0.635 0.969 0.295 0.486 0.854 0.938 0.847 0.325 0.537 0.670 0.533 0.900 0.425 0.886 10.766 13.866 0.285 0.271 2.907 2.678 0.889 1.830 0.547 0.515 0.067 0.134 0.686 0.122 0.072 0.097 1.085 0.389 0.035 0.597 970 chr19 47273220 47302028 + 0 NA intron (NM_001145145, intron 1 of 6) MIR|SINE|MIR 510 NM_001145145 6510 Hs.631582 NM_005628 ENSG00000105281 SLC1A5 AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC solute carrier family 1 member 5 protein-coding 2.362 1.945 1.507 3.335 0.898 0.517 1.345 1.320 0.308 0.703 0.219 1.617 3.084 2.262 0.172 1.218 1.498 0.610 0.971 1.411 1.474 1.491 0.545 3.866 4.122 1.649 2.175 3.813 4.141 1.452 1.699 1.176 2.013 0.298 0.485 1.618 3.812 1.315 0.781 2.631 2.711 0.068 0.569 1.345 1.617 0.445 0.739 0.706 0.873 86 chr1 55676658 55682790 + 0 NA intron (NM_015306, intron 1 of 67) intron (NM_015306, intron 1 of 67) 1315 NM_015306 23358 Hs.477009 NM_015306 ENSG00000162402 USP24 - ubiquitin specific peptidase 24 protein-coding 5.551 2.759 5.522 2.526 4.437 2.612 3.783 2.172 0.426 1.914 0.997 5.081 6.269 3.486 0.092 4.085 4.991 3.362 6.077 11.396 10.606 4.141 2.065 10.637 11.444 3.434 5.134 5.965 10.125 5.091 5.133 4.578 9.568 2.591 2.447 5.298 nan 2.559 1.438 3.403 3.391 0.436 1.538 3.783 5.081 0.974 2.058 4.667 1.576 1619 chr7 148523941 148558127 + 0 NA intron (NM_001203248, intron 3 of 19) intron (NM_001203248, intron 3 of 19) 39567 NM_001203249 2146 Hs.444082 NM_004456 ENSG00000106462 EZH2 ENX-1|ENX1|EZH1|EZH2b|KMT6|KMT6A|WVS|WVS2 enhancer of zeste 2 polycomb repressive complex 2 subunit protein-coding 1.161 0.737 0.956 0.167 0.384 0.220 0.128 0.221 0.103 0.302 0.234 0.260 0.348 0.200 0.171 0.660 0.581 0.735 0.766 0.487 0.606 0.410 0.209 1.649 1.612 0.752 0.889 0.466 0.418 0.958 0.450 0.496 0.863 0.176 0.247 1.149 3.303 0.685 nan 0.088 0.140 0.044 0.146 0.128 0.260 0.060 0.065 0.331 0.752 1235 chr22 41761774 41768503 + 0 NA intron (NM_001145398, intron 1 of 3) intron (NM_001145398, intron 1 of 3) 1801 NM_001145398 7008 Hs.181159 NM_003216 ENSG00000167074 TEF - TEF, PAR bZIP transcription factor protein-coding 3.207 nan 2.195 0.954 0.793 0.405 0.749 0.490 0.143 0.490 0.283 1.013 0.760 0.179 0.053 1.366 1.927 0.656 1.242 2.283 1.909 2.949 0.634 0.658 0.675 1.749 nan 4.857 6.464 10.179 13.976 0.572 0.646 0.586 0.827 1.358 3.264 0.878 0.722 0.935 3.880 0.126 0.684 0.749 1.013 1.717 0.662 0.117 1.509 1425 chr5 139013256 139091760 + 0 NA intron (NM_001317203, intron 2 of 3) intron (NM_001317203, intron 2 of 3) -2517 NM_001317209 51523 Hs.189119 NM_016463 ENSG00000171604 CXXC5 CF5|HSPC195|RINF|WID CXXC finger protein 5 protein-coding 2.112 1.041 nan 0.520 0.685 0.339 1.008 0.864 0.195 0.283 0.152 0.846 1.667 0.593 0.101 2.333 3.417 2.158 2.131 1.045 0.916 0.915 0.308 5.147 5.223 1.333 1.954 1.933 2.201 1.796 1.849 1.971 3.386 0.760 0.754 0.853 1.596 0.577 0.442 0.871 1.017 0.161 0.214 1.008 0.846 0.764 1.451 2.548 0.274 295 chr11 742638 750009 + 0 NA Intergenic AluSq|SINE|Alu -1109 NM_006755 6888 Hs.438678 NM_006755 ENSG00000177156 TALDO1 TAL|TAL-H|TALDOR|TALH transaldolase 1 protein-coding 1.867 2.581 2.869 1.266 1.823 0.799 1.445 1.115 0.328 1.336 0.618 3.602 3.657 0.897 0.057 8.407 9.716 2.910 4.596 3.661 4.091 3.448 1.112 4.740 4.764 1.506 2.359 2.726 4.853 2.017 1.848 2.692 4.755 1.302 1.675 1.024 1.726 1.567 0.824 0.683 1.973 0.310 0.562 1.445 3.602 0.252 1.187 1.076 0.572 415 chr11 127314353 127333415 + 0 NA Intergenic Intergenic 182919 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LOC101929497 - uncharacterized LOC101929497 ncRNA 0.531 0.705 1.023 0.281 3.309 1.683 0.500 0.020 0.033 0.230 0.250 0.960 1.021 0.045 0.118 0.571 0.658 0.194 0.244 0.988 1.085 4.819 1.364 0.168 0.164 1.062 1.540 1.414 1.557 0.420 0.249 0.442 0.537 2.338 1.812 0.175 nan 1.444 0.849 0.079 0.168 0.737 0.282 0.500 0.960 0.059 0.027 0.104 0.129 607 chr14 75695879 75710155 + 0 NA Intergenic AluSc5|SINE|Alu -42464 NM_005252 2353 Hs.25647 NM_005252 ENSG00000170345 FOS AP-1|C-FOS|p55 Fos proto-oncogene, AP-1 transcription factor subunit protein-coding 2.050 1.583 1.262 0.336 1.075 0.496 0.709 0.224 0.289 0.276 0.211 0.628 1.348 0.160 0.143 0.384 0.496 0.343 0.572 1.232 1.099 0.510 0.261 0.564 0.599 0.530 0.944 1.391 nan 1.215 1.032 0.316 0.321 0.518 0.454 0.567 1.141 2.670 nan 0.125 1.225 0.066 0.056 0.709 0.628 0.401 0.185 0.076 0.565 231 chr1 234644906 234691376 + 0 NA promoter-TSS (NR_038426) promoter-TSS (NR_038426) -616 NR_038426 100506795 Hs.448989 NR_038426 ENSG00000231768 LINC01354 - long intergenic non-protein coding RNA 1354 ncRNA 1.835 2.069 1.887 0.834 1.663 0.836 2.528 1.518 0.235 1.223 0.555 1.723 2.773 0.138 0.115 0.633 1.087 1.148 3.874 1.611 1.579 nan 1.790 0.442 0.467 0.630 1.065 nan 2.115 0.736 0.621 0.398 0.513 0.927 1.607 0.744 1.915 nan 0.813 0.664 1.101 0.263 0.730 2.528 1.723 0.390 0.868 0.320 0.347 267 chr10 34806423 34819449 + 0 NA intron (NM_001184785, intron 2 of 24) intron (NM_001184785, intron 2 of 24) 291317 NM_001184788 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 0.763 1.322 0.781 0.048 2.840 1.709 0.265 4.721 0.250 0.507 0.337 0.477 0.274 0.208 0.078 0.428 0.332 1.949 nan 0.415 0.473 4.562 1.282 2.595 2.468 0.461 0.914 0.692 0.959 0.204 0.120 0.256 0.478 0.582 1.077 0.304 0.601 0.536 0.356 0.085 0.080 0.109 0.104 0.265 0.477 0.296 0.235 0.124 1664 chr8 95903804 95913691 + 0 NA Intergenic CpG-25869 -1265 NM_057749 9134 Hs.521693 NM_004702 ENSG00000175305 CCNE2 CYCE2 cyclin E2 protein-coding nan 3.030 4.505 6.443 5.950 2.953 2.351 1.848 0.264 1.313 0.600 5.499 14.751 1.161 0.079 3.659 3.336 3.769 nan 8.751 8.199 4.463 2.988 3.379 3.673 3.570 4.671 11.022 14.948 4.977 5.203 1.861 3.685 5.641 6.650 3.550 3.096 3.114 1.635 5.321 5.324 1.676 2.982 2.351 5.499 0.436 2.439 1.294 1.189 91 chr1 61322879 61341413 + 0 NA Intergenic Intergenic -40890 NR_110628 101926964 Hs.650459 NR_110628 ENSG00000231252 LOC101926964 - uncharacterized LOC101926964 ncRNA 2.993 0.847 7.086 0.110 0.454 0.224 0.483 0.192 0.061 0.160 0.111 0.321 0.620 0.042 0.125 0.386 0.355 0.196 0.462 0.611 0.834 0.141 0.045 0.304 0.274 nan nan 0.497 nan 4.807 5.314 0.239 0.407 0.875 0.447 0.230 0.624 0.787 0.573 0.095 0.086 0.262 0.100 0.483 0.321 1.427 0.093 0.137 0.180 44 chr1 23340403 23348418 + 0 NA Intergenic AluSz|SINE|Alu -1531 NM_001009999 23028 Hs.591518 NM_015013 ENSG00000004487 KDM1A AOF2|BHC110|CPRF|KDM1|LSD1 lysine demethylase 1A protein-coding 5.435 2.038 nan 4.223 2.523 1.400 2.527 1.061 0.241 1.975 0.809 1.541 4.917 1.775 0.188 3.634 3.940 2.507 3.721 6.087 5.150 4.011 1.512 8.136 7.625 4.106 5.846 4.116 8.846 6.514 8.986 3.012 5.503 2.203 1.957 6.934 5.421 2.339 1.585 2.429 2.438 0.358 1.460 2.527 1.541 0.836 1.123 1.740 1.554 1560 chr7 20272993 20290860 + 0 NA Intergenic L2a|LINE|L2 24726 NR_134567 100506098 Hs.59203 NR_134567 ENSG00000233834 LOC100506098 - uncharacterized LOC100506098 ncRNA 0.980 1.251 1.047 0.242 0.310 0.215 0.215 0.092 0.072 0.078 0.126 0.125 0.635 0.125 0.181 0.584 0.375 1.747 nan 0.301 0.352 0.850 0.344 0.198 0.237 0.526 0.826 0.704 0.606 0.340 0.170 0.182 0.227 0.290 0.444 0.370 nan 0.455 0.557 0.240 0.051 0.053 0.031 0.215 0.125 0.038 0.046 0.085 0.152 1049 chr2 95957257 95977369 + 0 NA intron (NM_013434, intron 1 of 8) MIRb|SINE|MIR 4241 NM_013434 30818 Hs.437376 NM_013434 ENSG00000115041 KCNIP3 CSEN|DREAM|KCHIP3 potassium voltage-gated channel interacting protein 3 protein-coding 1.382 2.286 4.871 0.831 0.701 0.294 1.952 0.064 0.040 0.735 0.477 1.378 6.563 0.032 0.057 1.454 2.696 0.421 0.554 2.152 1.950 2.253 0.588 1.489 1.446 0.290 0.461 0.510 0.663 0.754 0.891 1.043 1.240 0.893 0.677 0.606 0.948 0.928 0.547 5.545 1.598 0.309 0.071 1.952 1.378 1.516 0.602 0.799 0.234 1340 chr4 77116774 77136334 + 0 NA intron (NM_005506, intron 1 of 11) L1MA8|LINE|L1 8498 NM_001204255 950 Hs.349656 NM_005506 ENSG00000138760 SCARB2 AMRF|CD36L2|EPM4|HLGP85|LGP85|LIMP-2|LIMPII|SR-BII scavenger receptor class B member 2 protein-coding 2.874 1.828 2.930 3.496 2.895 1.527 1.340 1.078 0.115 1.040 0.470 2.282 3.207 0.615 0.086 2.473 3.907 1.352 2.383 3.222 2.811 3.569 1.245 2.074 1.965 2.576 3.070 7.409 8.809 4.777 4.649 1.331 2.368 2.526 2.600 3.910 8.971 2.341 1.311 2.896 4.700 0.649 3.257 1.340 2.282 0.342 2.512 1.916 3.264 953 chr19 39137316 39163066 + 0 NA intron (NM_001322033, intron 1 of 20) intron (NM_001322033, intron 1 of 20) 11935 NM_004924 81 Hs.270291 NM_004924 ENSG00000130402 ACTN4 ACTININ-4|FSGS|FSGS1 actinin alpha 4 protein-coding 2.413 1.642 3.422 2.618 0.846 0.460 0.681 2.566 0.754 0.646 0.350 1.321 5.665 0.649 0.152 0.862 1.028 2.215 5.660 1.232 1.636 1.408 0.428 2.092 2.155 1.811 2.779 2.257 2.808 nan 2.389 1.118 1.916 1.155 1.901 1.487 3.231 1.609 1.022 0.769 0.384 0.391 0.535 0.681 1.321 0.550 1.135 0.704 1.230 1240 chr22 45105685 45112697 + 0 NA intron (NM_001017528, intron 2 of 8) intron (NM_001017528, intron 2 of 8) 11113 NM_181334 553158 Hs.102336 NM_181334 ENSG00000248405 PRR5-ARHGAP8 - PRR5-ARHGAP8 readthrough protein-coding 1.055 nan 1.187 0.371 0.329 0.237 0.215 0.075 0.115 0.312 0.153 0.443 0.847 0.263 0.067 0.507 0.541 0.352 0.456 0.622 0.569 2.731 0.936 3.196 3.109 0.070 nan 3.027 2.992 nan 0.515 0.365 0.496 0.389 0.334 0.262 0.463 1.336 1.088 0.362 0.594 0.041 0.068 0.215 0.443 0.138 4.636 0.043 0.069 263 chr10 19039663 19044889 + 0 NA Intergenic LTR9|LTR|ERV1 93963 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding nan 0.592 0.507 1.421 0.338 0.183 0.073 0.188 0.124 0.334 0.141 0.184 0.154 0.010 0.085 2.350 3.091 0.350 0.293 0.237 0.361 17.305 12.264 0.316 0.253 0.097 0.308 2.405 1.833 0.230 0.074 0.303 0.653 1.263 1.031 0.141 0.211 0.525 0.584 0.022 0.034 0.073 0.015 0.073 0.184 0.036 0.173 0.209 0.046 406 chr11 119223028 119253237 + 0 NA intron (NM_001243759, intron 1 of 11) intron (NM_001243759, intron 1 of 11) -3240 NM_171997 9099 Hs.524085 NM_004205 ENSG00000036672 USP2 UBP41|USP9 ubiquitin specific peptidase 2 protein-coding 1.379 1.359 1.350 0.484 0.627 0.341 0.723 0.175 0.079 0.488 0.351 0.621 1.536 0.361 0.090 0.832 nan 0.862 1.234 1.100 1.147 2.488 1.011 0.619 0.736 1.474 nan 2.114 2.725 2.180 1.982 1.824 2.458 1.273 1.094 1.774 4.212 1.546 0.971 1.378 0.639 0.139 0.245 0.723 0.621 0.341 0.396 1.171 1.102 1376 chr5 17213785 17230766 + 0 NA intron (NM_006317, intron 1 of 1) intron (NM_006317, intron 1 of 1) 4605 NM_006317 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding nan nan nan 0.316 1.416 0.622 1.450 0.322 0.198 2.302 1.495 1.890 nan 0.103 0.111 0.258 0.134 1.492 1.928 5.392 4.701 2.519 0.731 1.878 1.808 nan 2.686 1.475 2.325 1.968 1.654 0.710 1.769 0.609 0.523 0.655 nan 3.164 1.725 1.180 0.032 0.129 0.032 1.450 1.890 0.268 0.060 0.685 0.203 705 chr16 32685592 32701406 + 0 NA Intergenic Intergenic -6049 NR_110897 729355 Hs.592038 NM_001099687 ENSG00000261509 TP53TG3B TP53TG3E|TP53TG3F TP53 target 3B protein-coding 0.630 0.751 0.687 0.083 2.693 1.204 0.220 0.075 0.098 0.167 0.089 0.667 2.648 0.625 0.100 0.303 0.174 0.191 0.158 1.140 0.813 1.271 0.506 0.447 0.309 0.546 0.693 5.659 7.443 0.506 0.198 0.161 0.232 0.099 0.176 0.121 0.139 0.280 0.321 4.270 0.034 0.042 0.050 0.220 0.667 0.105 1.538 0.056 0.054 630 chr14 105788941 105818818 + 0 NA intron (NM_015197, intron 1 of 23) intron (NM_015197, intron 1 of 23) -21965 NM_001242786 2972 Hs.424484 NM_001519 ENSG00000185024 BRF1 BRF|BRF-1|CFDS|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF BRF1, RNA polymerase III transcription initiation factor subunit protein-coding 1.442 0.616 2.212 0.493 0.322 0.222 0.875 0.293 0.097 0.163 0.225 0.257 1.013 0.134 0.078 2.436 3.500 0.304 0.517 1.466 1.183 1.429 0.467 0.600 0.585 0.743 1.168 0.560 0.794 0.787 0.793 1.613 1.357 0.334 0.399 0.234 0.351 0.145 0.130 0.524 0.199 0.076 0.154 0.875 0.257 0.235 0.214 0.689 0.050 1538 chr7 801164 819970 + 0 NA intron (NM_017802, intron 9 of 12) intron (NM_017802, intron 9 of 12) -43254 NM_001164758 5575 Hs.520851 NM_002735 ENSG00000188191 PRKAR1B PRKAR1 protein kinase cAMP-dependent type I regulatory subunit beta protein-coding 1.153 0.711 1.466 0.771 0.452 0.214 0.869 0.152 0.180 0.777 0.540 0.157 nan 0.145 0.145 2.054 1.929 1.045 nan 4.241 3.771 nan 0.076 2.286 2.400 0.496 0.712 nan 0.778 0.194 0.202 0.198 0.234 1.585 1.564 0.280 0.498 1.658 0.907 3.956 1.699 0.360 1.240 0.869 0.157 0.664 0.179 0.032 0.218 608 chr14 75715538 75728216 + 0 NA Intergenic Intergenic -23604 NM_005252 2353 Hs.25647 NM_005252 ENSG00000170345 FOS AP-1|C-FOS|p55 Fos proto-oncogene, AP-1 transcription factor subunit protein-coding 4.050 3.132 2.049 2.293 2.380 1.237 1.802 0.891 0.329 0.814 0.339 2.108 3.840 0.669 0.130 0.932 2.714 1.276 2.366 3.268 2.795 1.747 1.732 3.991 4.316 1.734 2.251 3.700 nan 3.330 3.621 1.084 2.363 5.221 4.297 2.689 2.461 4.475 nan 1.497 2.286 0.894 1.089 1.802 2.108 0.691 0.863 1.201 0.400 1533 chr6 162337423 162346490 + 0 NA intron (NM_013987, intron 5 of 10) Tigger3b|DNA|TcMar-Tigger 449947 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 0.763 nan 0.787 0.108 0.421 0.141 1.326 0.106 0.146 0.956 0.330 0.514 0.390 0.025 0.156 0.554 0.405 0.639 0.984 1.059 1.156 4.507 1.531 0.310 0.284 0.208 0.269 0.875 0.976 nan 0.409 0.219 0.270 6.858 7.497 0.136 0.247 1.352 0.866 0.025 0.020 1.535 0.018 1.326 0.514 0.047 0.615 0.054 0.096 1616 chr7 137665627 137687922 + 0 NA intron (NM_194071, intron 1 of 11) intron (NM_194071, intron 1 of 11) 10073 NM_194071 64764 Hs.490273 NM_194071 ENSG00000182158 CREB3L2 BBF2H7 cAMP responsive element binding protein 3 like 2 protein-coding nan nan nan 0.192 0.554 0.206 0.395 0.879 0.167 1.125 0.505 0.102 1.234 0.379 0.109 1.298 2.108 0.839 1.263 0.704 0.593 nan 1.300 2.674 2.595 1.251 nan 1.287 1.418 nan 1.776 0.415 0.626 1.412 0.959 0.669 1.437 1.872 nan 0.575 3.141 0.205 0.464 0.395 0.102 0.208 1.014 0.094 0.398 363 chr11 65473679 65488465 + 0 NA exon (NM_006388, exon 6 of 14) exon (NM_006388, exon 6 of 14) 1599 NM_182709 10524 Hs.397010 NM_006388 ENSG00000172977 KAT5 ESA1|HTATIP|HTATIP1|PLIP|TIP|TIP60|ZC2HC5|cPLA2 lysine acetyltransferase 5 protein-coding nan 1.819 1.428 2.592 1.999 0.963 1.353 0.994 0.228 0.636 0.506 2.198 4.052 1.534 0.152 2.682 2.987 2.361 3.250 4.313 4.384 3.303 1.635 3.211 3.610 2.195 2.822 3.205 3.621 2.765 2.598 1.914 3.156 2.097 2.415 1.427 1.565 1.700 0.972 1.717 1.685 0.465 0.993 1.353 2.198 0.811 1.265 0.622 0.537 1265 chr3 88658245 88678708 + 0 NA Intergenic Intergenic -469460 NM_001195308 8545 Hs.444818 NM_003663 ENSG00000163320 CGGBP1 CGGBP|p20-CGGBP CGG triplet repeat binding protein 1 protein-coding nan 0.634 0.843 0.039 0.097 0.024 0.482 0.025 0.016 0.023 0.117 0.058 0.154 0.031 0.061 0.141 0.123 0.259 0.453 0.262 0.275 0.156 0.083 0.117 0.112 5.895 5.534 0.125 0.111 0.587 0.388 0.089 0.106 0.029 0.057 0.363 0.649 0.328 0.253 0.003 0.056 0.005 0.012 0.482 0.058 0.010 0.029 0.005 0.036 1647 chr8 59755216 59771402 + 0 NA intron (NM_014729, intron 4 of 8) intron (NM_014729, intron 4 of 8) -190905 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 1.509 nan 1.227 0.456 1.375 0.698 0.846 0.378 0.080 0.453 0.251 1.359 0.673 0.179 0.097 0.419 0.420 0.331 0.969 1.666 1.540 2.014 0.601 0.089 0.052 1.167 nan 1.920 2.017 0.476 0.270 0.085 0.125 0.694 0.990 0.221 0.425 1.590 0.972 0.620 3.997 0.160 0.425 0.846 1.359 0.012 0.487 0.023 0.354 1794 chrX 137064152 137089259 + 0 NA Intergenic Intergenic 428359 NM_003413 7547 Hs.111227 NM_003413 ENSG00000156925 ZIC3 HTX|HTX1|VACTERLX|ZNF203 Zic family member 3 protein-coding 0.439 0.659 0.823 0.046 0.269 0.121 0.465 0.053 0.045 0.122 0.114 0.024 0.158 0.017 0.037 0.309 0.400 0.406 0.312 0.155 0.158 3.183 1.031 0.211 0.187 0.106 0.153 0.103 0.112 0.277 0.107 0.212 0.394 0.170 0.137 0.118 0.163 0.577 0.384 0.007 0.073 0.053 0.070 0.465 0.024 0.093 0.189 0.035 1105 chr2 215481334 215496596 + 0 NA Intergenic Intergenic 114059 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA nan 1.141 nan 0.121 0.214 0.068 0.147 0.098 0.021 0.093 0.109 0.141 0.274 0.064 0.118 0.408 0.150 0.254 0.187 0.246 0.263 0.157 0.102 0.201 0.197 2.385 2.980 0.404 nan 0.920 0.690 0.134 0.249 0.053 0.060 2.002 5.992 0.257 0.322 0.025 0.047 0.018 0.046 0.147 0.141 0.070 0.027 0.037 1.857 1652 chr8 71084149 71108025 + 0 NA intron (NM_001321703, intron 4 of 22) L2c|LINE|L2 -112525 NM_024504 63978 Hs.736037 NM_024504 ENSG00000147596 PRDM14 PFM11 PR/SET domain 14 protein-coding 1.771 0.936 0.992 0.742 0.402 0.216 0.464 0.526 0.088 0.781 0.454 0.418 0.443 0.073 0.096 0.344 0.596 0.286 0.514 1.004 1.146 1.864 0.582 0.440 0.411 1.816 2.171 0.699 1.518 0.411 0.185 0.239 0.328 2.241 3.074 0.618 1.138 3.983 2.165 0.155 0.428 0.589 0.278 0.464 0.418 0.053 1.052 0.116 0.203 256 chr10 11044191 11079357 + 0 NA intron (NM_001326345, intron 1 of 13) intron (NM_001326345, intron 1 of 13) 1055 NM_001326345 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP, Elav-like family member 2 protein-coding nan 0.874 0.470 0.069 0.403 0.252 0.377 0.164 0.119 0.322 0.158 0.047 1.179 2.756 0.113 2.212 2.493 2.898 2.510 0.790 0.798 3.947 0.856 0.652 0.642 0.582 0.783 0.121 0.119 0.294 0.355 0.904 2.013 0.092 0.052 0.143 0.151 0.087 0.167 0.172 0.215 0.011 0.249 0.377 0.047 0.011 0.014 1.415 0.021 422 chr11 129870370 129879000 + 0 NA non-coding (NR_024233, exon 1 of 1) non-coding (NR_024233, exon 1 of 1) -1955 NM_199437 56980 Hs.275086 NM_020228 ENSG00000170325 PRDM10 PFM7 PR/SET domain 10 protein-coding 3.681 3.887 3.306 5.055 4.774 2.503 5.618 1.450 0.244 2.432 1.110 5.962 7.627 4.204 0.140 7.555 8.253 5.833 8.489 8.664 8.084 6.834 4.893 13.510 13.726 4.222 5.168 8.087 12.265 7.808 9.635 11.451 16.054 7.507 7.519 5.697 nan 3.027 1.931 5.405 4.470 1.689 3.390 5.618 5.962 0.782 2.374 5.625 1.762 1756 chr9 128506242 128527260 + 0 NA intron (NR_024123, intron 2 of 6) intron (NR_024123, intron 2 of 6) 6273 NM_001134778 5090 Hs.428027 NM_006195 ENSG00000167081 PBX3 - PBX homeobox 3 protein-coding nan nan 1.547 2.813 2.813 1.479 1.770 0.833 0.154 1.337 1.000 1.887 nan 1.002 0.128 0.172 0.195 0.568 0.760 3.191 2.805 2.588 1.141 0.862 0.834 1.683 nan 2.561 4.018 5.759 4.564 0.162 0.299 3.019 2.791 3.424 4.684 nan 1.071 1.611 2.501 0.829 1.075 1.770 1.887 0.521 1.507 0.043 1.532 892 chr18 55251586 55263097 + 0 NA Intergenic L2a|LINE|L2 -3372 NM_001012515 2235 Hs.365365 NM_000140 ENSG00000066926 FECH EPP|FCE ferrochelatase protein-coding nan 1.170 1.626 0.929 0.708 0.445 1.879 0.284 0.042 0.352 0.149 1.279 1.628 0.669 0.051 1.185 1.498 1.444 2.709 2.230 2.530 6.532 1.413 6.315 6.489 0.683 0.949 1.352 2.267 1.254 1.142 0.776 1.193 1.388 2.258 0.841 0.977 nan 1.812 0.276 0.418 0.175 0.748 1.879 1.279 0.178 0.486 0.243 0.227 46 chr1 23865641 23904910 + 0 NA intron (NM_002167, intron 2 of 2) MIRc|SINE|MIR 1010 NM_002167 3399 Hs.76884 NM_002167 ENSG00000117318 ID3 HEIR-1|bHLHb25 inhibitor of DNA binding 3, HLH protein protein-coding 2.638 2.557 nan 2.635 1.752 0.980 1.930 2.107 0.311 1.507 0.666 2.107 8.220 3.760 0.179 1.586 1.398 6.445 10.902 4.596 3.710 3.565 1.063 3.940 3.838 3.688 4.816 1.160 1.687 2.804 2.533 1.348 2.126 2.361 2.720 2.583 3.233 2.601 1.582 5.280 1.974 0.609 2.128 1.930 2.107 1.063 1.520 1.024 0.934 1277 chr3 119050130 119065687 + 0 NA intron (NM_020754, intron 1 of 11) intron (NM_020754, intron 1 of 11) -16301 NR_046748 100874246 Hs.607097 NR_046748 ENSG00000241155 ARHGAP31-AS1 - ARHGAP31 antisense RNA 1 ncRNA 0.855 nan 0.642 0.169 0.370 0.228 0.154 0.356 0.113 0.132 0.079 0.082 0.243 0.035 0.081 0.388 0.310 0.230 0.291 0.317 nan 0.189 0.120 0.331 0.268 nan 1.376 0.190 0.219 0.514 0.280 0.106 0.144 0.032 0.064 0.281 0.491 2.675 1.288 0.032 0.085 0.082 0.154 0.082 0.024 0.019 0.006 0.104 1505 chr6 53042800 53061509 + 0 NA Intergenic Intergenic -38530 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing homolog 1 protein-coding 0.932 1.438 nan 1.432 0.916 0.419 0.513 0.164 0.188 0.261 0.214 1.170 1.938 0.088 0.143 0.427 0.469 0.355 0.491 0.739 0.834 2.930 0.751 0.402 0.355 0.350 0.569 6.401 4.618 0.432 0.162 0.234 0.412 0.791 0.894 0.235 0.341 1.513 0.820 0.238 0.148 0.086 0.096 0.513 1.170 0.021 0.508 0.095 0.047 546 chr13 95358389 95366551 + 0 NA 3' UTR (NM_007084, exon 1 of 1) 3' UTR (NM_007084, exon 1 of 1) -1730 NR_120417 101927248 Hs.626095 NR_120417 LOC101927248 - uncharacterized LOC101927248 ncRNA 0.854 4.189 1.960 5.154 1.754 0.770 2.793 0.139 0.040 0.362 0.324 2.530 17.728 1.082 0.110 0.321 0.191 0.221 0.320 5.573 3.349 1.898 1.092 0.102 0.115 0.069 0.122 0.473 1.661 0.537 0.421 0.313 0.267 0.509 0.488 0.379 0.764 1.020 0.565 0.047 0.554 0.012 0.504 2.793 2.530 0.071 0.424 0.061 0.062 687 chr16 4320399 4324057 + 0 NA intron (NM_003223, intron 1 of 6) CpG 773 NM_003223 7023 Hs.513305 NM_003223 ENSG00000090447 TFAP4 AP-4|bHLHc41 transcription factor AP-4 protein-coding 7.821 nan 7.821 10.535 7.024 3.768 5.760 2.509 0.438 5.025 1.936 9.654 14.877 5.158 0.079 11.641 9.692 3.208 4.445 11.350 8.878 14.271 5.636 11.297 11.426 4.543 nan 10.599 15.072 15.420 20.063 3.147 5.153 9.981 7.610 11.168 10.042 4.498 2.429 6.602 7.705 2.148 4.941 5.760 9.654 2.599 3.731 3.055 4.848 1584 chr7 57883564 57887781 + 0 NA Intergenic Intergenic 375789 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding nan 1.212 1.611 0.083 0.459 0.105 0.144 0.161 0.038 0.113 0.140 0.142 0.491 0.091 0.278 2.326 5.209 11.652 2.252 0.366 0.493 0.260 0.160 0.541 0.665 0.376 0.801 0.132 0.221 0.753 0.360 0.623 1.109 0.080 0.119 0.220 0.429 0.397 0.363 0.027 0.042 0.091 0.113 0.144 0.142 0.045 0.024 0.175 0.118 275 chr10 92961371 92982388 + 0 NA intron (NM_001257101, intron 1 of 9) MIR|SINE|MIR -8029 NM_001256549 84333 Hs.500512 NM_032373 ENSG00000180628 PCGF5 RNF159 polycomb group ring finger 5 protein-coding 0.704 1.569 0.988 2.473 3.946 2.041 0.079 0.306 0.139 1.193 0.617 4.379 3.063 0.140 0.094 0.436 0.612 0.749 1.025 4.007 3.918 4.454 1.616 0.814 0.792 0.549 0.822 nan 6.622 0.316 0.246 0.308 0.632 1.024 0.790 0.535 0.938 2.201 1.164 2.087 2.540 0.205 0.121 0.079 4.379 0.116 0.397 0.292 0.212 1403 chr5 71101715 71110924 + 0 NA Intergenic Intergenic 91329 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 0.939 nan 0.773 0.104 2.712 1.152 0.279 0.146 0.105 0.258 0.253 0.078 0.532 0.078 0.186 0.226 0.184 0.189 0.332 0.271 0.307 nan 2.111 0.109 0.095 0.583 nan 0.313 0.285 0.505 0.264 0.130 0.208 2.472 2.608 0.260 0.890 1.167 0.699 0.079 0.117 0.423 0.042 0.279 0.078 0.011 0.210 0.032 0.223 469 chr12 51610016 51621194 + 0 NA Intergenic AluSx|SINE|Alu -4066 NM_001330422 5463 Hs.555886 NM_002702 ENSG00000184271 POU6F1 BRN5|MPOU|TCFB1 POU class 6 homeobox 1 protein-coding nan 1.818 1.544 0.902 1.256 0.616 1.164 0.832 0.221 1.280 0.764 1.693 2.472 1.282 0.098 nan 6.941 1.902 2.268 3.449 nan 3.022 1.085 4.894 5.100 1.637 nan 2.189 nan 2.576 2.732 1.837 3.394 2.225 1.731 1.635 2.028 1.798 1.258 0.534 1.990 0.390 1.039 1.164 1.693 0.532 1.151 2.750 0.666 1187 chr20 62669769 62689153 + 0 NA 3' UTR (NM_018419, exon 2 of 2) 3' UTR (NM_018419, exon 2 of 2) 1518 NM_018419 54345 Hs.8619 NM_018419 ENSG00000203883 SOX18 HLTRS|HLTS SRY-box 18 protein-coding 1.621 1.644 3.473 0.289 0.769 0.267 0.219 0.151 0.108 0.238 0.193 0.838 0.942 0.798 0.096 0.962 nan 0.572 0.764 1.102 1.084 1.373 0.417 0.953 1.158 2.740 3.944 0.506 0.589 0.632 0.418 0.677 0.629 0.341 0.302 0.252 0.382 0.715 0.574 0.796 0.238 0.054 0.098 0.219 0.838 0.801 1.282 0.101 0.039 1287 chr3 133156102 133173162 + 0 NA intron (NR_135277, intron 2 of 3) MER2|DNA|TcMar-Tigger 9988 NR_135278 85003 Hs.659202 NR_135276 ENSG00000249993 BFSP2-AS1 - BFSP2 antisense RNA 1 ncRNA 0.938 nan nan 0.251 2.943 1.497 0.277 0.324 0.236 0.359 0.238 0.324 0.432 0.038 0.067 0.344 0.305 0.881 1.630 0.499 0.503 6.841 0.859 0.519 0.549 0.702 1.025 0.678 0.457 nan 0.318 0.153 0.308 0.791 1.338 0.280 0.583 1.436 0.657 0.214 0.177 0.084 0.167 0.277 0.324 0.131 0.317 0.040 0.053 1419 chr5 118650735 118665947 + 0 NA intron (NM_001286815, intron 2 of 2) L2b|LINE|L2 -10529 NM_001286814 25816 Hs.618488 NM_014350 ENSG00000145779 TNFAIP8 GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2 TNF alpha induced protein 8 protein-coding 1.587 1.755 1.187 0.362 0.685 0.346 0.472 0.827 0.176 0.400 0.339 0.039 2.160 0.174 0.115 0.248 0.143 0.480 1.685 0.562 0.696 1.678 0.399 0.143 0.155 2.010 nan 1.107 1.342 1.345 1.081 0.120 0.200 3.546 5.239 0.332 1.359 1.896 0.978 0.762 0.146 1.236 0.400 0.472 0.039 0.400 0.206 0.020 0.356 375 chr11 72522644 72546675 + 0 NA intron (NM_033388, intron 7 of 17) intron (NM_033388, intron 7 of 17) 9208 NM_033388 89849 Hs.653186 NM_033388 ENSG00000168010 ATG16L2 ATG16B|WDR80 autophagy related 16 like 2 protein-coding nan 1.408 1.911 1.617 0.882 0.360 1.102 0.718 0.128 0.465 0.292 1.477 2.694 1.058 0.124 2.165 2.832 2.213 2.901 3.126 3.098 3.223 1.617 4.550 5.014 1.606 2.214 2.781 4.380 1.586 1.603 1.474 1.902 1.326 1.346 1.231 1.467 1.302 0.739 1.614 1.222 0.222 0.891 1.102 1.477 0.335 1.295 0.618 0.492 332 chr11 45101559 45114290 + 0 NA Intergenic Intergenic -7640 NR_046338 56981 Hs.178715 NM_020229 ENSG00000019485 PRDM11 PFM8 PR/SET domain 11 protein-coding nan 1.508 0.983 0.451 1.703 0.882 2.148 1.062 0.202 0.665 0.199 0.236 1.008 0.076 0.106 1.540 2.977 0.190 0.320 0.784 0.666 9.714 2.914 0.143 0.168 1.191 1.577 0.734 0.541 2.658 2.153 0.381 0.483 0.472 0.476 0.362 nan 1.983 1.025 0.168 1.757 0.127 0.013 2.148 0.236 1.660 0.230 0.093 0.050 1552 chr7 13863204 13900185 + 0 NA Intergenic L2|LINE|L2 144445 NM_001163152 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding nan 1.006 nan 0.188 0.856 0.367 0.691 1.587 0.158 2.959 1.305 0.643 0.947 0.071 0.147 nan 0.524 0.871 0.923 0.694 0.797 1.060 0.414 0.312 0.323 1.795 2.143 0.741 0.733 0.295 0.149 0.092 0.158 1.984 2.399 0.211 0.437 1.307 0.756 0.039 0.209 0.459 0.183 0.691 0.643 0.108 0.487 0.036 0.053 309 chr11 12762831 12811957 + 0 NA intron (NM_021961, intron 3 of 12) intron (NM_021961, intron 3 of 12) 91425 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 1.059 nan 1.661 1.249 0.804 0.425 0.961 0.651 0.085 1.003 0.524 2.650 1.243 0.066 0.057 nan 1.235 0.831 1.200 2.740 2.778 2.047 0.724 0.873 0.918 1.390 nan 2.524 2.451 0.772 0.635 0.466 0.864 1.663 1.833 0.521 1.602 2.491 nan 1.885 1.967 0.366 0.439 0.961 2.650 0.130 0.260 0.377 0.316 1571 chr7 30925129 30962040 + 0 NA Intergenic Intergenic -7725 NM_001329872 358 Hs.76152 NM_000385 ENSG00000240583 AQP1 AQP-CHIP|CHIP28|CO aquaporin 1 (Colton blood group) protein-coding 1.656 0.858 2.268 0.224 0.258 0.161 0.370 0.126 0.070 0.103 0.117 0.813 3.544 0.080 0.126 0.858 1.345 0.603 2.801 0.553 nan 0.538 0.195 0.829 0.910 0.491 nan nan nan 0.538 0.594 0.545 0.679 0.200 0.339 0.541 nan 0.489 0.500 1.249 0.195 0.046 0.106 0.370 0.813 0.289 0.081 0.217 0.357 1124 chr2 241518446 241527317 + 0 NA non-coding (NR_103792, exon 1 of 1) non-coding (NR_103792, exon 1 of 1) 2852 NR_103792 101752400 Hs.585987 NR_103792 ENSG00000260942 CAPN10-AS1 locus959 CAPN10 antisense RNA 1 (head to head) ncRNA 2.544 nan 4.579 1.778 1.931 1.109 1.315 0.465 0.018 0.948 0.317 1.670 3.909 1.413 0.127 2.763 2.921 1.926 3.059 2.251 2.309 1.905 0.653 2.768 3.048 1.451 2.285 2.437 3.383 6.624 8.635 1.281 2.400 1.189 1.172 2.864 4.682 0.982 0.529 1.356 1.086 0.235 0.523 1.315 1.670 0.470 1.146 0.564 1.611 1003 chr2 2287972 2303123 + 0 NA intron (NM_001329851, intron 1 of 23) intron (NM_001329851, intron 1 of 23) -27457 NR_024468 730811 Hs.629472 NR_024468 ENSG00000225619 MYT1L-AS1 - MYT1L antisense RNA 1 ncRNA 0.596 0.738 0.601 0.147 0.493 0.295 0.430 0.069 0.054 0.433 0.321 0.649 1.995 0.050 0.107 0.391 0.546 0.343 0.367 0.731 0.869 0.995 0.380 0.237 0.174 0.778 1.045 1.086 1.113 0.693 0.465 0.320 0.360 0.390 0.447 0.572 1.060 1.353 0.798 4.227 0.404 0.070 0.134 0.430 0.649 0.258 0.323 0.084 0.017 706 chr16 33191857 33207406 + 0 NA Intergenic Intergenic -5952 NM_001099687 729355 Hs.592038 NM_001099687 ENSG00000261509 TP53TG3B TP53TG3E|TP53TG3F TP53 target 3B protein-coding 0.369 0.425 0.334 0.123 2.891 1.433 0.156 0.116 0.052 0.195 0.124 0.701 2.597 0.639 0.095 0.239 0.142 0.127 0.199 0.829 0.726 1.001 0.246 0.265 0.219 0.415 0.527 4.407 4.861 0.359 0.152 0.123 0.179 0.043 0.081 0.076 0.118 0.210 0.249 4.359 0.052 0.043 0.046 0.156 0.701 0.100 1.538 0.038 0.064 1480 chr6 34190848 34217971 + 0 NA promoter-TSS (NM_145903) promoter-TSS (NM_145903) -168 NM_001319079 3159 Hs.518805 NM_002131 ENSG00000137309 HMGA1 HMG-R|HMGA1A|HMGIY high mobility group AT-hook 1 protein-coding nan 1.585 nan 1.678 1.691 0.839 2.840 0.939 0.172 1.206 0.534 2.274 3.074 3.137 0.135 2.333 2.643 1.717 nan nan 2.298 2.588 0.895 3.201 3.309 1.690 2.541 6.268 9.138 2.996 3.377 1.336 2.203 2.221 2.304 2.844 3.187 1.464 0.793 0.694 1.047 0.481 0.948 2.840 2.274 0.575 0.957 0.730 1.325 109 chr1 94078208 94084429 + 0 NA intron (NM_001261408, intron 5 of 13) intron (NM_001261408, intron 5 of 13) -1616 NM_001261410 8412 Hs.36958 NM_003567 ENSG00000137936 BCAR3 NSP2|SH2D3B breast cancer anti-estrogen resistance 3 protein-coding nan nan 2.051 0.920 5.453 2.385 2.927 8.935 0.349 1.384 0.450 1.106 2.331 0.245 0.118 4.357 6.339 6.375 6.211 2.036 nan 3.780 1.181 2.137 2.023 2.586 nan 4.821 4.749 nan 0.381 5.506 5.684 1.547 1.236 0.597 1.120 2.215 1.467 3.776 0.527 0.537 0.396 2.927 1.106 0.095 4.384 3.821 0.278 1448 chr6 5199314 5219987 + 0 NA intron (NM_001164840, intron 2 of 2) intron (NM_001164840, intron 2 of 2) 51533 NM_001164840 57128 Hs.387755 NM_020408 ENSG00000214113 LYRM4 C6orf149|CGI-203|COXPD19|ISD11 LYR motif containing 4 protein-coding 1.446 0.969 1.205 0.719 0.337 0.224 0.262 0.646 0.122 0.282 0.206 0.516 0.518 0.079 0.101 0.462 0.545 1.687 1.045 0.597 0.530 0.758 0.241 0.394 0.411 0.825 1.219 0.831 0.882 1.347 1.234 0.325 0.602 0.183 0.265 1.940 4.968 0.744 0.634 0.059 0.265 0.018 0.092 0.262 0.516 0.128 0.055 0.153 1.273 1126 chr2 242354495 242361637 + 0 NA intron (NM_014808, intron 8 of 26) MER112|DNA|hAT-Charlie -59254 NR_036083 100422942 NR_036083 ENSG00000263752 MIR3133 - microRNA 3133 ncRNA 1.035 nan 1.316 1.256 0.743 0.473 0.124 0.043 0.181 0.308 0.270 7.233 0.523 0.091 0.112 0.934 1.578 0.360 0.485 1.269 2.038 2.388 0.560 0.708 0.619 0.405 0.651 3.054 3.554 0.346 0.164 1.078 1.755 0.247 0.435 0.234 0.548 0.568 0.513 0.612 0.161 0.080 0.011 0.124 7.233 0.068 0.528 0.501 0.086 1525 chr6 151709841 151713646 + 0 NA intron (NM_020861, intron 1 of 2) CpG 1092 NM_020861 57621 Hs.520073 NM_020861 ENSG00000181472 ZBTB2 ZNF437 zinc finger and BTB domain containing 2 protein-coding 9.304 4.800 8.255 9.277 8.570 4.952 10.934 5.117 0.370 2.378 1.053 9.796 14.395 9.376 0.244 10.807 11.389 13.013 14.472 13.173 nan 14.789 6.908 18.043 18.889 3.730 5.042 8.459 12.969 13.012 15.696 4.760 10.601 8.854 8.428 9.847 10.548 2.137 1.284 6.958 8.024 2.166 5.730 10.934 9.796 2.467 5.064 3.481 4.399 1545 chr7 4776995 4781165 + 0 NA intron (NM_001037165, intron 1 of 8) intron (NM_001037165, intron 1 of 8) -36182 NM_014855 9907 Hs.558440 NM_014855 ENSG00000242802 AP5Z1 KIAA0415|SPG48|zeta adaptor related protein complex 5 zeta 1 subunit protein-coding 1.364 0.739 0.964 2.124 0.337 0.121 0.671 0.431 0.115 0.411 0.438 1.126 nan 0.997 0.183 0.606 0.517 0.309 nan 1.564 1.649 nan 0.253 0.929 0.779 0.497 0.956 nan 7.325 0.195 0.107 0.154 0.410 1.025 2.451 0.309 0.532 0.457 0.416 1.108 0.193 0.139 0.095 0.671 1.126 0.234 8.452 0.095 0.119 175 chr1 170630823 170648095 + 0 NA intron (NM_006902, intron 1 of 4) intron (NM_006902, intron 1 of 4) 6146 NM_006902 5396 Hs.283416 NM_006902 ENSG00000116132 PRRX1 AGOTC|PHOX1|PMX1|PRX-1|PRX1 paired related homeobox 1 protein-coding nan nan nan 0.195 0.231 0.087 0.821 5.155 0.476 0.137 0.211 0.076 1.449 0.056 0.104 0.403 0.292 0.942 1.185 nan 0.453 0.089 0.066 0.083 0.100 5.660 7.796 0.319 0.324 1.209 1.213 0.542 0.867 0.073 0.076 0.362 nan 0.263 0.392 0.032 0.320 0.016 0.018 0.821 0.076 0.006 0.089 0.125 0.298 1006 chr2 2686880 2705029 + 0 NA Intergenic Intergenic -360869 NM_001303052 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 0.424 0.486 0.761 0.213 1.271 0.648 0.438 0.045 0.054 0.344 0.204 2.945 3.177 0.042 0.103 0.387 0.483 0.231 0.270 3.718 3.930 1.454 0.398 0.165 0.167 0.629 0.928 3.612 2.539 0.540 0.462 0.259 0.253 0.163 0.154 0.188 0.197 1.206 0.820 1.404 0.882 0.016 0.066 0.438 2.945 0.344 1.533 0.032 0.028 500 chr12 107152997 107171229 + 0 NA intron (NR_040246, intron 1 of 3) intron (NR_040246, intron 1 of 3) -6221 NM_018157 55188 Hs.131306 NM_018157 ENSG00000111785 RIC8B RIC8|hSyn RIC8 guanine nucleotide exchange factor B protein-coding 1.701 1.190 nan 0.952 1.270 0.791 1.085 0.920 0.132 0.461 0.367 0.933 2.569 5.393 0.211 1.067 0.975 1.727 2.128 1.981 1.877 2.490 1.272 6.280 6.486 1.888 2.280 1.629 2.023 1.504 1.276 0.509 1.024 2.316 2.871 0.976 1.192 1.755 1.075 0.682 1.086 0.432 0.968 1.085 0.933 0.328 0.746 0.439 0.287 806 chr17 60876956 60887314 + 0 NA intron (NM_152598, intron 1 of 10) intron (NM_152598, intron 1 of 10) 1879 NM_001100875 162333 Hs.665663 NM_152598 ENSG00000173838 MARCH10 MARCH-X|RNF190 membrane associated ring-CH-type finger 10 protein-coding 1.725 nan 0.826 0.604 3.188 1.753 1.635 0.159 0.109 0.678 0.308 5.069 2.463 0.137 0.088 2.527 3.558 1.786 1.980 2.286 1.839 1.631 0.518 4.061 4.385 0.282 nan 6.240 8.531 1.292 1.015 0.891 1.177 0.710 0.840 0.395 0.493 1.241 0.921 0.360 3.585 0.073 1.520 1.635 5.069 0.177 1.205 0.295 0.079 1054 chr2 114325655 114351475 + 0 NA Intergenic Intergenic 2108 NR_031632 100302128 NR_031632 ENSG00000221055 MIR1302-3 MIRN1302-3|hsa-mir-1302-3 microRNA 1302-3 ncRNA 2.011 nan 2.027 1.056 1.097 0.642 1.922 0.473 0.267 0.570 0.393 1.460 nan 0.831 0.142 1.673 2.130 1.396 2.148 3.088 nan 2.652 1.029 2.282 2.196 1.264 1.761 1.540 1.950 2.393 1.987 1.180 1.778 0.834 0.754 1.902 3.550 1.809 1.057 0.650 1.314 0.274 0.448 1.922 1.460 0.648 1.457 0.482 1.996 712 chr16 56963517 56975246 + 0 NA exon (NM_001010989, exon 3 of 8) exon (NM_001010989, exon 3 of 8) 3379 NM_001010989 9709 Hs.146393 NM_014685 ENSG00000051108 HERPUD1 HERP|Mif1|SUP homocysteine inducible ER protein with ubiquitin like domain 1 protein-coding nan nan nan 6.489 5.651 3.003 3.222 1.673 0.137 1.447 0.512 4.253 4.415 1.401 0.119 2.817 3.701 1.228 1.705 8.439 6.114 4.591 1.994 6.627 6.586 1.228 nan nan nan nan 4.208 2.250 3.290 1.788 1.982 2.363 nan nan 1.525 4.062 4.692 0.218 2.721 3.222 4.253 0.538 1.626 0.886 0.956 1330 chr4 39306835 39315720 + 0 NA intron (NM_002913, intron 12 of 24) L1MB7|LINE|L1 56724 NM_002913 5981 Hs.507475 NM_002913 ENSG00000035928 RFC1 A1|MHCBFB|PO-GA|RECC1|RFC|RFC140 replication factor C subunit 1 protein-coding 0.866 0.540 1.065 0.105 0.416 0.268 0.186 0.691 0.055 0.458 0.245 0.268 0.176 0.074 0.105 0.536 0.510 1.086 0.926 0.714 0.930 0.360 0.201 0.165 0.180 0.816 1.353 1.098 0.760 2.785 1.899 0.421 0.491 0.068 0.085 0.351 0.892 4.908 2.145 0.019 0.296 0.207 0.186 0.268 0.177 0.242 0.090 0.208 1280 chr3 127253762 127267271 + 0 NA Intergenic Intergenic -3893 NR_125397 101927149 Hs.407798 NR_125397 ENSG00000239921 LINC01471 - long intergenic non-protein coding RNA 1471 ncRNA 1.772 nan 1.760 1.303 1.820 1.065 1.594 0.178 0.060 3.586 1.220 2.787 3.257 0.176 0.053 0.451 0.667 0.329 0.387 4.941 5.321 2.407 0.670 0.554 0.597 0.906 nan 1.041 1.936 2.855 3.404 0.892 0.931 0.871 0.545 2.759 4.256 1.697 0.891 1.496 1.313 0.156 0.223 1.594 2.787 0.332 0.707 0.191 1.451 726 chr17 1586852 1589290 + 0 NA intron (NM_006445, intron 1 of 42) CpG 105 NM_006445 10594 Hs.181368 NM_006445 ENSG00000174231 PRPF8 HPRP8|PRP8|PRPC8|RP13|SNRNP220 pre-mRNA processing factor 8 protein-coding 3.736 2.453 2.570 4.266 7.750 3.885 8.809 1.543 0.794 1.835 1.055 5.958 8.721 2.659 0.082 10.702 9.933 5.989 7.903 8.776 10.069 6.381 4.088 11.218 11.502 3.376 4.352 5.279 7.272 7.592 9.481 5.005 8.085 2.207 2.602 4.802 6.720 2.337 1.187 2.609 3.700 0.707 2.827 8.809 5.958 5.657 3.917 2.236 2.872 771 chr17 37350722 37366819 + 0 NA intron (NM_001330200, intron 3 of 5) intron (NM_001330200, intron 3 of 5) 2194 NM_001330200 6143 Hs.381061 NM_000981 ENSG00000108298 RPL19 L19 ribosomal protein L19 protein-coding nan 2.431 1.422 1.275 2.925 1.450 2.815 1.344 0.219 1.285 0.696 2.000 5.012 1.712 0.081 3.225 3.394 2.540 3.377 nan 4.405 3.887 2.443 6.756 7.434 1.989 2.722 4.149 5.271 nan 4.389 2.560 3.151 2.708 3.540 3.058 3.534 2.120 1.136 3.821 1.488 0.528 0.832 2.815 2.000 1.324 1.644 0.859 1.076 1778 chr9 139117543 139142959 + 0 NA intron (NM_181701, intron 1 of 11) intron (NM_181701, intron 1 of 11) 7436 NM_181701 169714 Hs.144073 NM_181701 ENSG00000165661 QSOX2 QSCN6L1|SOXN quiescin sulfhydryl oxidase 2 protein-coding nan 0.942 5.425 1.111 0.551 0.262 0.680 0.236 0.089 0.702 0.355 3.025 1.642 0.248 0.075 1.250 1.865 0.446 0.729 4.486 4.355 nan 0.554 0.357 0.314 0.902 1.286 1.464 1.958 1.829 1.786 0.609 0.944 1.316 1.561 0.687 0.669 1.307 0.743 1.638 1.083 0.490 1.359 0.680 3.025 0.692 0.497 0.315 0.136 1133 chr20 3174539 3207561 + 0 NA intron (NM_001267623, intron 1 of 5) intron (NM_001267623, intron 1 of 5) 1044 NM_001324236 3704 Hs.415299 NM_033453 ENSG00000125877 ITPA C20orf37|HLC14-06-P|ITPase|My049|NTPase|dJ794I6.3 inosine triphosphatase protein-coding 1.543 3.116 1.409 1.394 1.003 0.587 0.982 0.462 0.148 1.193 0.560 2.622 3.916 0.659 0.110 2.507 2.764 1.336 1.868 3.426 3.261 4.585 1.227 2.484 2.731 1.520 2.100 5.147 5.314 1.886 1.784 1.152 1.715 1.654 1.847 1.005 1.773 1.680 0.685 1.301 1.610 0.373 0.529 0.982 2.622 0.590 1.432 0.402 0.485 1087 chr2 182472520 182525345 + 0 NA intron (NM_001030311, intron 1 of 13) intron (NM_001030311, intron 1 of 13) 22902 NR_027690 375298 Hs.732358 NM_201548 ENSG00000188452 CERKL RP26 ceramide kinase like protein-coding 2.685 1.083 1.476 0.122 0.991 0.468 0.273 0.084 0.092 0.178 0.169 0.210 0.363 0.029 0.077 0.322 0.199 0.181 0.224 0.238 0.295 0.958 0.232 0.352 0.333 nan 6.355 0.680 0.719 11.052 11.829 0.127 0.212 2.449 2.165 1.406 nan 0.614 0.431 0.219 0.041 0.871 0.183 0.273 0.210 0.777 0.039 0.051 1.527 767 chr17 36606788 36622214 + 0 NA exon (NM_001199417, exon 2 of 24) exon (NM_001199417, exon 2 of 24) 29781 NM_001199417 57636 Hs.374446 NM_020876 ENSG00000275832 ARHGAP23 - Rho GTPase activating protein 23 protein-coding nan 1.325 1.235 0.379 1.060 0.552 0.787 1.875 0.332 0.628 0.333 0.367 0.886 0.675 0.068 0.676 1.136 0.787 2.155 nan 1.128 0.796 0.336 1.501 1.534 0.407 0.886 1.429 2.010 nan 5.118 0.457 0.601 0.409 0.459 1.456 2.735 0.922 0.645 0.627 0.384 0.046 0.119 0.787 0.367 0.484 1.709 0.084 0.457 1658 chr8 77577389 77622684 + 0 NA intron (NM_024721, intron 1 of 10) intron (NM_024721, intron 1 of 10) -4526 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 1.269 0.657 0.976 0.276 0.322 0.198 1.059 1.959 0.234 0.352 0.208 0.064 0.311 3.839 0.120 1.172 0.945 4.511 4.778 1.764 1.706 0.605 0.187 5.730 5.817 1.033 1.343 0.377 0.437 1.122 0.819 0.609 1.718 3.709 3.529 0.365 0.711 1.033 0.660 0.169 1.604 0.901 0.032 1.059 0.064 0.011 0.549 0.420 0.131 1252 chr3 24225586 24243373 + 0 NA intron (NM_001252634, intron 5 of 11) intron (NM_001252634, intron 5 of 11) 41664 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 0.775 0.766 0.796 0.030 0.143 0.063 0.151 1.898 0.127 0.097 0.061 0.189 0.185 0.030 0.090 0.162 0.133 0.269 0.422 0.339 0.523 0.709 0.199 0.132 0.127 0.369 0.515 0.191 0.209 nan 0.688 0.107 0.190 0.168 0.173 1.650 5.503 0.395 0.419 0.078 0.151 0.021 0.177 0.151 0.189 0.027 0.029 0.039 1.163 525 chr13 23452514 23458939 + 0 NA intron (NR_138043, intron 2 of 2) MER50|LTR|ERV1 16594 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - brain abundant, membrane attached signal protein 1 pseudogene 1 pseudo 0.544 0.732 0.520 0.123 0.077 0.050 0.019 0.164 0.025 0.098 0.105 0.093 0.193 0.067 0.062 1.359 1.061 14.525 10.833 0.342 0.314 0.072 0.084 0.194 0.071 0.170 0.245 0.281 0.265 0.469 0.186 4.011 8.600 0.046 0.040 0.174 0.253 0.632 0.622 0.070 0.015 0.123 0.019 0.093 0.047 6.839 0.067 1644 chr8 53358330 53387182 + 0 NA Intergenic Intergenic -50317 NM_014682 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18, C2H2C-type zinc finger protein-coding 1.044 nan 1.598 0.213 0.306 0.089 0.169 0.071 0.077 0.065 0.115 0.133 0.602 0.053 0.115 8.180 7.256 8.635 5.342 0.455 0.615 0.424 0.166 14.733 15.022 0.290 nan 0.515 0.574 0.524 0.162 6.023 7.069 0.177 0.348 0.245 0.464 0.762 0.626 0.012 0.089 0.029 0.080 0.169 0.133 0.050 0.148 5.280 0.069 1429 chr5 142773669 142786568 + 0 NA exon (NM_000176, exon 2 of 9) exon (NM_000176, exon 2 of 9) 3136 NM_001204264 2908 Hs.122926 NM_000176 ENSG00000113580 NR3C1 GCCR|GCR|GCRST|GR|GRL nuclear receptor subfamily 3 group C member 1 protein-coding nan 2.313 2.383 2.069 1.390 0.823 1.117 2.652 0.225 0.753 0.267 1.663 12.351 0.866 0.085 0.187 0.091 0.548 0.759 4.222 3.754 2.584 1.335 3.672 3.520 5.362 6.359 4.879 6.085 5.201 5.591 1.845 1.968 2.745 2.707 2.262 3.832 1.640 0.884 2.124 4.691 0.913 1.494 1.117 1.663 1.268 4.282 0.762 0.903 364 chr11 65543460 65561270 + 0 NA Intergenic Intergenic 2119 NR_031600 100302196 NR_031600 ENSG00000071894 MIR1234 MIRN1234|hsa-mir-1234 microRNA 1234 ncRNA nan 1.423 1.160 1.123 0.584 0.315 0.575 0.240 0.100 0.294 0.207 1.234 1.974 0.688 0.110 1.321 1.751 1.592 2.415 1.503 1.389 1.370 0.426 0.996 1.101 0.552 0.952 2.558 2.559 0.780 0.577 2.277 4.173 0.550 0.554 0.354 0.568 0.977 0.784 1.823 0.481 0.085 0.103 0.575 1.234 0.663 1.306 2.525 0.091 1515 chr6 126049464 126074767 + 0 NA Intergenic Intergenic -8617 NM_012259 23493 Hs.144287 NM_012259 ENSG00000135547 HEY2 CHF1|GRIDLOCK|GRL|HERP1|HESR2|HRT2|bHLHb32 hes related family bHLH transcription factor with YRPW motif 2 protein-coding 1.425 1.422 1.265 0.936 0.342 0.164 0.637 1.775 0.152 0.217 0.122 0.360 2.097 0.167 0.113 0.348 0.197 0.313 0.641 0.681 0.583 3.684 1.285 0.476 0.536 0.523 0.794 0.909 0.948 7.520 8.162 0.100 0.146 6.402 6.842 1.021 1.666 0.773 0.472 0.288 0.182 1.909 0.025 0.637 0.360 0.658 0.597 0.043 1.373 1736 chr9 37961363 37968202 + 0 NA intron (NM_003028, intron 3 of 5) intron (NM_003028, intron 3 of 5) -60432 NR_024872 92014 Hs.634120 NM_033412 ENSG00000122696 SLC25A51 CG7943|MCART1 solute carrier family 25 member 51 protein-coding 0.698 nan 2.315 2.820 4.307 1.900 0.355 0.828 0.164 1.056 0.384 3.289 1.888 0.048 0.075 3.781 4.512 8.835 12.734 0.596 0.660 2.544 0.912 1.486 1.474 0.959 1.502 2.549 5.003 0.324 0.347 3.495 5.757 0.858 1.214 0.249 0.468 5.580 2.730 0.739 0.288 0.138 0.313 0.355 3.289 0.085 1.903 2.459 0.109 10 chr1 3131713 3140351 + 0 NA intron (NM_199454, intron 2 of 16) intron (NM_199454, intron 2 of 16) 91493 NR_036215 100422968 NR_036215 ENSG00000283572 MIR4251 - microRNA 4251 ncRNA 0.664 nan 0.672 0.041 0.610 0.223 0.090 0.088 0.055 0.030 0.014 0.411 0.025 0.073 0.205 0.147 0.098 0.096 0.298 0.346 0.041 0.078 0.115 0.083 0.207 nan nan 0.076 nan 0.097 0.071 0.122 0.102 0.041 0.079 0.090 0.098 0.262 8.330 0.052 0.055 0.018 0.090 0.014 0.171 0.035 0.023 287 chr10 126824264 126851787 + 0 NA intron (NM_001290214, intron 1 of 10) AmnSINE1|SINE|Deu 9662 NM_001321014 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding nan 2.435 1.715 2.096 1.628 0.816 0.641 0.137 0.053 0.889 0.342 1.727 7.319 0.915 0.078 1.996 2.587 1.579 3.186 1.222 1.061 1.963 0.651 1.939 1.902 0.755 1.243 4.643 6.209 1.040 1.052 1.247 2.926 1.127 1.384 1.760 1.707 1.696 0.882 1.795 2.065 0.284 0.743 0.641 1.727 0.320 1.603 1.698 0.683 1427 chr5 142429394 142447959 + 0 NA intron (NM_015071, intron 17 of 22) intron (NM_015071, intron 17 of 22) -133389 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA nan 0.964 0.743 0.342 0.892 0.415 0.299 1.253 0.208 0.153 0.159 0.667 3.115 0.058 0.110 0.228 0.211 0.327 0.830 0.452 0.553 0.342 0.162 0.454 0.429 1.213 1.570 2.931 1.891 0.511 0.409 0.280 0.588 0.568 0.432 0.248 0.980 1.015 0.696 0.277 3.046 0.123 0.166 0.299 0.667 0.287 0.552 0.522 0.238 559 chr13 112503940 112527467 + 0 NA Intergenic Intergenic -31989 NR_046992 101928616 Hs.528450 NR_046992 LINC00354 - long intergenic non-protein coding RNA 354 ncRNA 0.600 nan 0.584 2.762 3.887 2.005 5.573 0.054 0.068 0.693 0.296 5.997 2.937 0.032 0.063 0.444 0.256 0.136 0.173 5.710 6.279 1.919 0.771 0.049 0.060 0.022 0.060 4.858 6.113 0.187 0.067 0.385 0.389 1.055 0.725 0.103 0.164 0.673 0.407 3.076 2.982 0.218 0.334 5.573 5.997 0.004 0.082 0.100 0.015 769 chr17 37006394 37011194 + 0 NA TTS (NR_002576) TTS (NR_002576) 454 NR_002576 619505 Hs.738742 NR_002576 ENSG00000199293 SNORA21 ACA21 small nucleolar RNA, H/ACA box 21 snoRNA nan 2.797 2.573 2.033 5.399 2.471 2.413 1.788 0.334 2.213 0.749 3.293 5.674 2.668 0.186 4.232 3.959 5.777 8.545 nan 5.306 7.422 3.599 18.563 20.631 3.207 3.985 6.702 11.289 nan 8.827 2.429 4.013 6.393 7.343 6.178 6.682 3.862 1.834 1.671 1.419 0.413 1.438 2.413 3.293 1.133 1.462 1.081 1.736 437 chr12 7044915 7057225 + 0 NA 3' UTR (NM_001940, exon 10 of 10) 3' UTR (NM_001940, exon 10 of 10) -1531 NM_001301836 113246 Hs.405913 NM_138425 ENSG00000111678 C12orf57 C10|GRCC10 chromosome 12 open reading frame 57 protein-coding 3.278 nan nan 9.118 5.260 2.758 2.766 0.572 0.052 2.993 1.343 3.492 9.426 2.675 0.129 3.239 4.529 4.380 5.676 nan 10.289 12.320 7.099 8.060 8.590 3.631 4.196 4.957 7.116 4.779 5.369 4.253 5.512 4.805 4.524 5.078 nan 1.855 1.029 4.167 3.323 0.868 3.909 2.766 3.492 7.934 1.156 1.857 1.780 1254 chr3 25333059 25351544 + 0 NA intron (NM_001290216, intron 4 of 10) AluSx1|SINE|Alu -39992 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 0.686 1.260 0.664 0.062 0.258 0.095 0.347 0.130 0.070 0.009 0.072 0.077 0.142 0.135 0.051 0.187 0.105 3.569 8.893 0.271 0.365 0.092 0.052 0.094 0.137 0.343 0.564 0.131 0.140 nan 0.155 0.146 0.275 1.024 1.122 0.087 0.153 0.316 0.347 0.191 0.053 0.320 0.136 0.347 0.077 0.018 0.038 0.037 0.033 722 chr16 88868337 88879612 + 0 NA intron (NM_030928, intron 9 of 9) intron (NM_030928, intron 9 of 9) 3788 NM_030928 81620 Hs.122908 NM_030928 ENSG00000167513 CDT1 DUP|RIS2 chromatin licensing and DNA replication factor 1 protein-coding nan 2.048 3.747 4.044 4.428 2.352 4.573 0.830 0.301 1.052 0.610 4.273 5.311 3.187 0.118 2.787 3.058 2.231 3.350 2.956 2.659 3.399 1.468 4.963 4.521 1.373 1.897 3.382 5.045 3.816 4.673 1.565 2.614 2.255 2.123 2.819 3.335 2.282 1.190 1.705 2.243 0.607 1.215 4.573 4.273 0.830 2.721 1.075 1.138 1176 chr20 57605877 57617906 + 0 NA intron (NR_037930, intron 1 of 5) intron (NR_037930, intron 1 of 5) -4469 NM_006886 514 Hs.177530 NM_006886 ENSG00000124172 ATP5E ATPE|MC5DN3 ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit protein-coding 2.434 2.490 1.733 2.011 1.434 0.990 0.994 1.166 0.134 1.098 0.647 1.671 3.804 3.535 0.179 3.415 nan 1.980 3.068 2.542 2.500 3.608 1.355 4.096 4.016 2.333 3.268 2.503 3.603 3.935 3.319 1.690 3.417 1.838 2.097 2.269 3.100 3.417 1.500 0.519 1.254 0.645 0.621 0.994 1.671 0.567 3.327 0.817 0.848 13 chr1 6256045 6270425 + 0 NA Intergenic AluSx|SINE|Alu 2605 NR_125997 102724450 Hs.669107 NR_125997 ENSG00000226944 LOC102724450 - uncharacterized LOC102724450 ncRNA 2.605 nan 1.834 0.378 1.733 0.747 0.726 0.967 0.180 0.640 0.355 0.827 2.979 3.914 0.212 2.424 2.049 1.648 2.202 2.722 3.570 2.288 0.983 4.372 4.361 1.905 nan nan 9.211 nan 3.378 1.996 2.903 1.061 1.094 3.508 4.859 1.758 0.822 1.380 0.878 0.212 0.408 0.726 0.827 0.472 1.308 0.703 1.765 1367 chr5 2794218 2803155 + 0 NA Intergenic AluSz|SINE|Alu 46441 NM_001294337 153571 Hs.148486 NM_178569 ENSG00000186493 C5orf38 CEI|IRX2NB chromosome 5 open reading frame 38 protein-coding 0.420 0.804 0.852 0.158 1.739 0.884 0.338 0.172 0.127 0.080 0.145 6.146 0.649 0.018 0.115 0.321 0.209 0.222 nan 5.778 7.305 0.111 0.095 0.082 0.030 0.202 0.287 nan 0.168 nan 2.185 0.181 0.229 0.076 0.124 0.125 0.163 0.219 nan 0.742 0.478 0.398 0.338 6.146 0.229 0.034 0.089 869 chr18 45100593 45134118 + 0 NA Intergenic MSTB|LTR|ERVL-MaLR 210488 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA nan 0.834 0.874 0.063 2.646 1.431 4.984 0.058 0.048 0.070 0.066 0.472 0.667 0.046 0.056 0.349 0.237 0.301 0.387 1.241 1.341 1.856 0.661 0.124 0.126 0.112 0.215 0.178 0.275 0.416 0.318 0.112 0.142 1.070 1.075 0.292 nan 0.933 0.827 0.043 0.173 0.375 0.028 4.984 0.472 0.009 0.015 0.030 0.296 962 chr19 42363029 42369172 + 0 NA intron (NM_001321485, intron 3 of 5) intron (NM_001321485, intron 3 of 5) 1584 NM_001321483 6223 Hs.438429 NM_001022 ENSG00000105372 RPS19 DBA|DBA1|S19 ribosomal protein S19 protein-coding 5.040 2.881 4.890 3.265 3.466 1.460 2.322 1.451 0.132 2.344 1.048 3.290 4.785 4.571 0.169 4.375 3.812 4.727 6.256 6.134 6.506 7.174 3.673 12.580 13.323 3.501 5.694 8.580 10.564 7.819 8.784 6.564 10.823 4.302 5.325 7.953 6.708 3.603 2.122 2.985 4.182 0.571 0.813 2.322 3.290 0.916 2.000 2.468 2.075 1332 chr4 41744545 41802556 + 0 NA Intergenic Intergenic -22563 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B NBLST2|NBPhox|PMX2B paired like homeobox 2b protein-coding 1.372 nan nan 0.120 0.216 0.097 0.071 0.084 0.058 0.101 0.147 0.050 0.237 0.040 0.060 0.306 0.163 0.161 0.234 0.278 0.233 0.096 0.085 0.118 0.119 0.158 0.259 0.223 0.265 1.712 1.458 0.122 0.189 0.042 0.046 2.518 5.925 0.675 0.762 0.025 0.283 0.005 2.678 0.071 0.050 0.121 0.049 0.026 2.793 1781 chr9 139734162 139745506 + 0 NA exon (NM_001080482, exon 1 of 1) exon (NM_001080482, exon 1 of 1) 967 NM_001080482 389813 Hs.495485 NM_001080482 ENSG00000232434 C9orf172 - chromosome 9 open reading frame 172 protein-coding nan 2.435 3.263 4.264 2.311 1.159 2.515 1.397 0.395 1.224 0.703 1.783 8.028 2.037 0.075 1.013 2.576 1.799 2.516 4.280 4.204 nan 0.912 1.502 1.447 1.259 2.016 5.040 5.495 2.468 3.316 0.881 1.168 2.322 1.960 1.431 2.877 1.740 0.838 2.965 2.952 0.695 1.401 2.515 1.783 1.132 3.353 0.721 1.049 591 chr14 50358515 50363332 + 0 NA exon (NM_001663, exon 2 of 2) exon (NM_001663, exon 2 of 2) 1187 NM_001663 382 Hs.525330 NM_001663 ENSG00000165527 ARF6 - ADP ribosylation factor 6 protein-coding 9.724 4.826 6.486 7.390 5.752 3.437 6.106 4.005 0.605 2.549 1.172 6.193 12.814 4.377 0.281 5.507 4.563 8.307 11.563 10.075 9.413 7.924 4.231 13.981 13.867 4.059 5.112 8.314 12.513 14.029 14.591 4.707 8.085 8.192 8.500 5.381 6.364 nan 2.411 6.769 6.290 2.396 4.420 6.106 6.193 2.075 2.932 2.011 2.162 963 chr19 42615300 42621544 + 0 NA intron (NM_001207025, intron 5 of 13) intron (NM_001207025, intron 5 of 13) 18203 NM_002698 5452 Hs.147381 NM_002698 ENSG00000028277 POU2F2 OCT2|OTF2|Oct-2 POU class 2 homeobox 2 protein-coding 1.831 0.781 1.710 0.183 2.682 1.413 0.369 0.189 0.052 0.101 0.077 1.437 1.067 0.017 0.130 2.200 2.744 0.257 0.184 2.445 2.419 3.344 0.796 0.216 0.237 0.405 0.767 3.263 3.191 2.441 2.133 2.006 2.835 0.415 0.295 2.016 6.303 1.735 1.001 3.219 8.462 0.045 0.889 0.369 1.437 0.232 0.205 1.634 2.403 535 chr13 53224806 53228356 + 0 NA promoter-TSS (NM_001130912) promoter-TSS (NM_001130912) -245 NM_001130912 10910 Hs.281902 NM_006704 ENSG00000165416 SUGT1 SGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone protein-coding 5.763 6.435 5.151 4.978 5.166 2.518 2.611 3.710 0.137 1.981 1.455 7.188 10.767 4.875 0.136 14.787 14.263 6.694 9.857 13.994 13.738 13.547 10.118 13.377 14.211 5.776 6.960 10.122 15.456 13.135 13.684 11.065 16.335 6.227 7.287 12.678 13.034 1.809 1.064 4.668 5.154 1.065 4.954 2.611 7.188 3.040 1.666 4.894 3.302 1687 chr8 141516439 141523813 + 0 NA Intergenic Intergenic -1271 NR_023360 54108 Hs.279704 NM_017444 ENSG00000104472 CHRAC1 CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1 chromatin accessibility complex 1 protein-coding 7.001 2.987 nan 7.195 7.616 4.647 4.039 2.650 0.479 1.144 0.571 7.086 16.759 2.606 0.162 3.545 4.132 4.941 7.355 nan 11.062 nan 3.933 11.576 11.988 3.770 4.411 5.238 8.374 4.715 5.055 4.096 5.485 5.395 6.436 4.972 3.938 3.759 1.994 7.907 4.969 1.251 1.990 4.039 7.086 0.873 3.623 1.465 1.622 117 chr1 119674127 119686480 + 0 NA intron (NM_201263, intron 1 of 5) intron (NM_201263, intron 1 of 5) -2716 NR_125977 101929147 Hs.697821 NR_125974 ENSG00000231365 LOC101929147 - uncharacterized LOC101929147 ncRNA nan 2.021 2.412 2.173 1.601 1.141 1.407 0.989 0.224 0.749 0.426 1.737 4.275 1.458 0.138 1.735 2.010 2.284 3.119 3.984 nan 4.271 3.131 5.486 5.754 5.968 6.757 3.856 5.712 3.542 3.579 1.760 2.131 2.475 2.107 4.037 5.312 2.635 1.704 1.410 1.429 0.276 1.368 1.407 1.737 0.490 1.070 0.784 1.377 1375 chr5 15886467 15894649 + 0 NA intron (NM_001278317, intron 2 of 3) AluSp|SINE|Alu -44733 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA nan nan 12.466 4.838 0.107 0.137 0.122 0.279 0.188 0.694 0.426 0.073 nan 0.079 0.101 0.545 0.479 0.210 0.296 0.441 0.571 7.084 1.733 0.055 0.082 nan 0.604 0.747 1.400 5.443 4.172 0.093 0.178 4.243 4.737 0.202 nan 1.279 0.953 0.018 0.055 0.736 2.258 0.122 0.073 0.023 0.123 0.012 0.362 57 chr1 36019127 36024630 + 0 NA intron (NM_024874, intron 1 of 20) intron (NM_024874, intron 1 of 20) 1159 NM_024874 79932 Hs.456507 NM_024874 ENSG00000142687 KIAA0319L AAVR KIAA0319 like protein-coding 4.233 nan 5.882 4.037 2.555 1.284 3.051 2.654 0.233 2.344 1.308 7.505 7.339 3.111 0.081 2.610 3.047 3.151 4.465 5.959 5.026 nan 1.905 5.768 5.937 3.417 5.325 7.526 10.176 nan 5.584 3.066 4.651 2.511 3.636 3.598 4.737 2.501 nan 3.107 2.005 0.815 1.536 3.051 7.505 1.206 1.973 1.272 1.506 1504 chr6 52970186 52990001 + 0 NA Intergenic MER34A|LTR|ERV1 33531 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing homolog 1 protein-coding 1.508 1.795 nan 0.440 0.334 0.210 0.227 0.166 0.057 0.367 0.125 0.520 0.465 0.077 0.150 0.470 0.447 5.623 3.953 0.367 0.419 4.490 1.210 0.401 0.402 0.196 0.452 3.381 3.145 0.465 0.286 0.245 0.429 3.674 4.097 0.458 1.008 1.512 0.912 0.049 0.086 1.207 0.181 0.227 0.520 0.025 0.632 0.183 0.189 136 chr1 155157105 155166739 + 0 NA exon (NM_001204286, exon 2 of 9) exon (NM_001204286, exon 2 of 9) 784 NM_001204295 4582 Hs.89603 NM_002456 ENSG00000185499 MUC1 ADMCKD|ADMCKD1|CA 15-3|CD227|EMA|H23AG|KL-6|MAM6|MCD|MCKD|MCKD1|MUC-1|MUC-1/SEC|MUC-1/X|MUC1/ZD|PEM|PEMT|PUM mucin 1, cell surface associated protein-coding 4.247 nan 2.233 3.060 4.982 2.714 5.437 1.857 0.550 1.576 0.768 5.600 12.316 5.243 0.225 3.228 5.056 2.237 3.950 7.172 6.789 4.076 1.547 2.106 2.378 2.323 3.246 6.658 11.037 1.704 1.774 5.081 8.372 5.250 3.560 2.924 2.654 2.474 1.419 5.772 7.431 1.417 2.097 5.437 5.600 1.923 3.422 9.286 0.615 813 chr17 70109236 70182430 + 0 NA Intergenic Intergenic 28672 NM_000346 6662 Hs.647409 NM_000346 ENSG00000125398 SOX9 CMD1|CMPD1|SRA1|SRXX2|SRXY10 SRY-box 9 protein-coding 1.361 0.818 0.907 0.393 0.839 0.406 0.298 0.357 0.161 0.201 0.156 0.538 1.041 0.039 0.105 4.649 5.414 9.815 7.793 0.522 0.575 1.575 0.473 3.399 3.605 nan 1.408 0.907 0.866 1.227 1.125 2.232 3.788 0.406 0.467 0.120 0.226 nan 0.572 0.084 0.119 0.090 0.081 0.298 0.538 0.172 0.073 2.121 0.074 816 chr17 73118910 73128837 + 0 NA intron (NM_024585, intron 2 of 2) AluJb|SINE|Alu 4017 NM_001252377 30833 Hs.67201 NM_014595 ENSG00000125458 NT5C DNT|DNT1|HEL74|P5N2|PN-I|PN-II|UMPH2|cdN|dNT-1 5', 3'-nucleotidase, cytosolic protein-coding 2.646 2.317 1.776 3.399 2.654 1.329 2.081 1.326 0.277 0.899 0.464 1.978 4.799 2.014 0.124 2.669 3.245 1.730 3.419 2.444 2.188 3.804 1.213 1.713 1.638 nan 2.651 4.850 6.110 4.874 5.625 1.303 2.342 1.576 2.274 1.850 2.975 nan 0.751 0.851 1.548 0.327 0.961 2.081 1.978 1.368 4.761 0.666 1.135 121 chr1 150479544 150489550 + 0 NA intron (NM_004425, intron 7 of 9) intron (NM_004425, intron 7 of 9) -3686 NR_051960 100874054 Hs.576460 NR_051960 ENSG00000228126 FALEC FAL1|LINC00568|ncRNA-a1 focally amplified long non-coding RNA in epithelial cancer ncRNA nan nan 1.747 0.451 0.941 0.497 0.838 0.764 0.344 1.279 0.952 1.533 3.563 0.930 0.099 1.039 1.422 1.488 2.115 2.525 nan 1.994 0.537 1.128 1.139 1.338 1.916 2.227 2.640 1.061 1.053 1.602 2.817 1.337 1.416 1.596 2.397 1.859 0.877 0.424 1.215 0.321 0.500 0.838 1.533 0.262 4.108 1.740 0.613 1132 chr20 3138547 3155306 + 0 NA exon (NM_001282533, exon 4 of 6) exon (NM_001282533, exon 4 of 6) -6370 NM_014948 22888 Hs.654646 NM_014948 ENSG00000185019 UBOX5 RNF37|UBCE7IP5|UIP5|hUIP5 U-box domain containing 5 protein-coding 2.213 3.212 4.282 2.703 1.225 0.607 0.938 0.415 0.148 0.627 0.287 2.988 4.514 0.647 0.080 2.589 2.891 1.424 2.130 3.650 3.237 4.158 1.315 3.876 4.292 2.716 3.467 13.070 12.189 3.027 3.225 2.171 2.692 1.879 1.677 1.687 2.507 1.903 0.865 4.097 5.278 0.269 0.319 0.938 2.988 1.085 2.709 0.822 0.554 585 chr14 37209691 37245248 + 0 NA intron (NM_030631, intron 3 of 9) intron (NM_030631, intron 3 of 9) 100696 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 1.294 0.953 1.261 1.171 1.408 0.676 0.510 0.153 0.126 0.236 0.195 0.945 4.158 0.054 0.121 0.233 0.162 0.230 0.346 1.482 1.466 1.337 0.340 0.293 0.314 0.676 1.017 2.627 2.225 0.651 0.294 0.251 0.373 1.638 2.386 0.167 0.271 0.772 0.543 9.692 2.195 0.558 0.180 0.510 0.945 0.120 0.605 0.190 0.191 1516 chr6 126109951 126143638 + 0 NA intron (NR_126386, intron 1 of 2) MIRb|SINE|MIR 13210 NR_126386 104355145 Hs.590370 NR_126386 ENSG00000232131 NCOA7-AS1 - NCOA7 antisense RNA 1 ncRNA 1.827 1.275 1.280 1.061 2.813 1.475 0.968 1.894 0.236 0.352 0.254 0.954 1.798 0.658 0.127 1.591 2.147 0.778 1.898 1.877 1.733 2.722 1.170 1.150 1.210 1.035 1.337 0.987 1.295 1.418 1.441 1.006 1.512 2.636 2.630 0.580 1.051 0.842 0.586 2.722 2.148 0.902 0.314 0.968 0.954 0.306 0.465 1.302 0.408 1220 chr22 24176504 24192111 + 0 NA Intergenic Intergenic -3108 NM_198440 91319 Hs.593679 NM_198440 ENSG00000099958 DERL3 C22orf14|IZP6|LLN2|derlin-3 derlin 3 protein-coding 1.760 nan 1.953 0.514 0.637 0.250 0.600 0.212 0.083 0.362 0.131 0.649 2.492 0.251 0.054 1.460 1.900 0.649 0.949 0.957 0.958 1.641 1.264 0.655 0.720 0.899 1.300 1.194 2.507 1.088 0.921 0.736 0.771 0.741 1.328 0.821 1.781 2.941 1.589 0.230 0.702 0.134 0.168 0.600 0.649 0.337 1.180 0.209 0.499 716 chr16 75974158 75985425 + 0 NA Intergenic Intergenic 298156 NR_144545 54386 Hs.301419 NM_018975 ENSG00000166848 TERF2IP DRIP5|RAP1 TERF2 interacting protein protein-coding 0.517 0.498 nan 0.110 0.440 0.227 0.918 0.054 0.129 0.152 0.155 0.131 0.217 0.038 0.069 1.046 0.848 0.069 0.085 0.386 0.491 8.107 4.113 0.453 0.436 0.125 0.174 0.389 0.378 0.536 0.349 0.332 0.672 0.070 0.044 0.104 0.162 0.877 0.751 0.020 0.112 0.009 0.064 0.918 0.131 0.165 0.009 0.341 0.055 122 chr1 151161003 151173268 + 0 NA Intergenic AluJo|SINE|Alu -3885 NM_001330689 8394 Hs.655131 NM_003557 ENSG00000143398 PIP5K1A - phosphatidylinositol-4-phosphate 5-kinase type 1 alpha protein-coding nan nan 2.900 1.663 1.772 0.799 2.670 3.339 0.917 1.578 0.855 2.519 10.178 5.629 0.349 2.765 2.730 4.859 8.373 4.883 nan 5.269 1.552 6.868 7.267 2.141 2.944 3.390 5.635 3.153 2.513 4.344 6.882 2.911 3.356 2.570 4.771 1.870 0.992 0.989 2.506 0.474 1.103 2.670 2.519 0.644 2.714 2.479 1.210 1530 chr6 158651945 158669467 + 0 NA Intergenic SVA_F|Other|Other 71327 NM_207118 404672 Hs.356224 NM_207118 ENSG00000272047 GTF2H5 C6orf175|TFB5|TFIIH|TGF2H5|TTD|TTD-A|TTD3|TTDA|bA120J8.2 general transcription factor IIH subunit 5 protein-coding nan 1.268 2.054 1.615 0.583 0.323 1.514 0.619 0.128 0.510 0.252 1.598 2.680 0.985 0.103 2.897 3.330 1.906 2.391 1.792 nan 2.586 0.932 3.535 3.379 0.744 1.057 2.345 3.152 2.267 1.800 1.189 2.267 1.718 2.270 2.774 4.955 0.719 0.389 1.159 1.445 0.598 0.499 1.514 1.598 0.326 0.994 0.814 1.506 762 chr17 34899397 34903472 + 0 NA intron (NM_024835, intron 1 of 13) CpG 697 NM_024835 79893 Hs.514116 NM_024835 ENSG00000278311 GGNBP2 DIF-3|DIF3|LCRG1|LZK1|ZFP403|ZNF403 gametogenetin binding protein 2 protein-coding 7.943 6.949 5.612 4.910 11.413 6.693 6.457 5.238 0.473 6.470 2.861 6.291 16.501 6.410 0.222 8.022 8.887 11.178 14.667 nan 12.700 13.105 6.414 20.429 21.478 5.132 6.702 11.043 18.164 13.587 15.349 5.718 10.425 10.961 12.348 10.396 10.712 4.584 1.753 6.803 6.993 2.677 4.459 6.457 6.291 2.680 3.721 2.924 3.646 1739 chr9 76590738 76597610 + 0 NA Intergenic AluY|SINE|Alu -392273 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA nan nan nan 0.153 1.191 0.562 0.094 0.318 0.093 0.411 0.207 5.792 0.179 0.031 0.095 0.256 0.141 0.162 nan 3.073 nan 0.098 0.105 0.191 0.326 0.066 0.151 3.261 5.073 0.203 0.091 0.057 0.115 0.036 0.103 0.189 0.285 1.029 0.503 0.008 0.064 0.094 5.792 0.041 1.330 0.015 0.019 1347 chr4 106463395 106492910 + 0 NA intron (NM_001242729, intron 1 of 13) intron (NM_001242729, intron 1 of 13) 4375 NM_001242729 54848 Hs.585224 NM_017700 ENSG00000236699 ARHGEF38 - Rho guanine nucleotide exchange factor 38 protein-coding 0.714 nan nan 1.033 1.768 0.911 0.394 0.151 0.082 0.543 0.370 1.451 0.550 0.040 0.064 1.067 1.222 4.007 nan 0.534 0.497 0.230 0.128 1.357 1.363 0.461 nan 0.679 0.790 0.404 0.162 0.539 0.739 1.388 1.515 0.262 nan 0.829 0.570 0.013 0.139 0.250 0.132 0.394 1.451 0.003 0.085 0.306 0.131 61 chr1 38476919 38483309 + 0 NA intron (NM_016037, intron 1 of 7) intron (NM_016037, intron 1 of 7) 1730 NM_016037 51118 Hs.472038 NM_016037 ENSG00000183520 UTP11 CGI-94|CGI94|UTP11L UTP11, small subunit processome component homolog (S. cerevisiae) protein-coding 23.140 nan 3.220 4.049 1.224 0.472 1.194 1.515 0.250 1.405 0.554 2.828 3.382 1.696 0.235 2.203 1.719 2.420 3.497 3.632 3.390 nan 1.031 4.960 4.983 2.810 3.734 9.872 11.795 nan 2.803 2.746 3.656 0.957 1.399 3.398 6.375 1.834 nan 1.149 0.778 0.193 0.758 1.194 2.828 0.575 0.894 1.149 1.962 1420 chr5 126110465 126116807 + 0 NA intron (NR_134488, intron 1 of 11) CpG 791 NM_001198557 4001 Hs.89497 NM_005573 ENSG00000113368 LMNB1 ADLD|LMN|LMN2|LMNB lamin B1 protein-coding nan 6.246 4.323 5.125 9.981 5.479 3.542 2.227 0.499 2.649 1.310 4.239 12.232 9.233 0.255 4.057 4.824 7.437 nan 12.153 10.667 6.926 3.032 15.290 15.942 5.942 7.208 7.189 11.937 10.599 13.697 2.590 5.252 13.916 14.410 6.563 6.253 2.624 1.588 5.074 8.602 4.256 4.968 3.542 4.239 1.376 4.212 2.443 3.373 416 chr11 128159245 128173442 + 0 NA Intergenic Intergenic 225862 NM_001162422 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 1.058 1.516 0.940 1.438 3.897 1.986 0.340 0.571 0.022 3.835 1.814 2.253 0.786 0.128 0.131 1.745 3.239 2.994 0.699 3.133 3.192 4.786 3.042 0.227 0.295 0.225 0.303 5.740 9.412 0.471 0.401 1.281 1.791 2.014 1.681 0.236 nan 3.265 1.822 1.557 0.044 0.689 0.094 0.340 2.253 0.014 0.301 0.686 0.373 1477 chr6 32142810 32147459 + 0 NA intron (NM_032741, intron 1 of 6).3 intron (NM_032741, intron 1 of 6).3 754 NM_032741 10554 Hs.409230 NM_006411 ENSG00000204310 AGPAT1 1-AGPAT1|G15|LPAAT-alpha|LPAATA 1-acylglycerol-3-phosphate O-acyltransferase 1 protein-coding nan 3.715 nan 8.840 4.645 2.820 9.355 4.599 0.314 2.721 1.224 9.001 17.423 6.106 0.254 6.489 8.679 6.202 nan 13.758 11.786 11.926 4.924 14.151 14.378 6.112 6.708 13.785 17.962 10.025 7.315 3.180 5.381 8.682 8.159 6.672 12.843 4.750 2.131 7.156 5.448 1.521 3.813 9.355 9.001 2.567 4.146 3.685 3.547 1025 chr2 25585157 25601821 + 0 NA Intergenic MER4E1|LTR|ERV1 -28030 NR_135490 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 1.278 1.279 1.560 1.169 0.606 0.269 0.546 0.156 0.097 1.747 0.799 0.442 2.792 0.199 0.144 0.643 0.988 0.808 1.217 1.303 1.350 2.310 0.770 1.214 1.256 0.752 1.289 1.993 nan 0.710 0.433 0.505 0.644 0.704 0.632 0.638 1.095 2.676 1.141 4.812 1.003 0.212 0.578 0.546 0.442 0.423 1.543 0.230 0.269 1119 chr2 239142788 239168676 + 0 NA intron (NM_022817, intron 22 of 22) intron (NM_022817, intron 22 of 22) -6967 NM_001282434 55502 Hs.42949 NM_018645 ENSG00000144485 HES6 C-HAIRY1|HES-6|bHLHb41|bHLHc23 hes family bHLH transcription factor 6 protein-coding 2.381 nan 11.859 2.792 3.255 1.640 1.148 0.142 0.049 1.279 0.726 4.199 3.202 0.222 0.127 3.023 2.625 0.648 0.924 6.523 5.879 3.562 1.403 2.284 2.341 1.047 1.755 3.683 nan 4.080 5.122 2.250 3.204 1.616 1.406 2.495 5.272 1.128 0.629 2.530 1.830 0.562 1.885 1.148 4.199 0.375 1.280 1.442 1.525 738 chr17 7460460 7466498 + 0 NA exon (NM_001198622, exon 3 of 5) exon (NM_001198622, exon 3 of 5) -1830 NM_015670 26168 Hs.513926 NM_015670 ENSG00000161956 SENP3 SMT3IP1|SSP3|Ulp1 SUMO1/sentrin/SMT3 specific peptidase 3 protein-coding 3.396 2.292 2.220 2.258 2.689 1.726 2.988 1.313 0.106 1.427 0.757 3.984 4.396 6.321 0.372 4.043 4.817 2.937 4.505 4.251 3.902 5.876 2.176 4.618 4.588 2.126 3.082 6.971 8.219 1.588 1.835 1.674 2.142 1.979 2.079 2.555 3.897 2.094 0.890 4.755 1.161 0.368 0.534 2.988 3.984 0.996 4.999 0.558 1.598 285 chr10 124757719 124793806 + 0 NA intron (NM_001330174, intron 1 of 9) MER57A1|LTR|ERV1 7333 NM_001609 36 Hs.81934 NM_001609 ENSG00000196177 ACADSB 2-MEBCAD|ACAD7|SBCAD acyl-CoA dehydrogenase, short/branched chain protein-coding nan 0.764 0.881 0.284 0.686 0.351 0.192 0.278 0.125 0.183 0.123 0.492 0.725 0.211 0.096 2.875 2.594 4.559 4.978 0.373 0.392 1.041 0.601 0.754 0.761 0.416 0.642 1.045 1.348 0.462 0.394 2.331 3.765 0.137 0.203 0.763 1.366 0.621 0.502 0.067 0.219 0.026 0.169 0.192 0.492 0.078 0.233 3.086 0.439 1709 chr9 2254048 2270782 + 0 NA Intergenic MIRc|SINE|MIR 103959 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 0.897 1.660 0.989 0.438 0.668 0.307 1.596 0.077 0.049 1.224 0.448 1.540 1.676 0.032 0.113 0.258 0.183 0.216 0.398 0.919 1.116 3.711 1.507 0.233 0.246 1.042 1.736 1.555 1.003 0.437 0.302 0.215 0.272 0.487 0.580 0.248 nan 4.438 2.340 1.544 1.697 0.086 0.047 1.596 1.540 0.168 0.127 0.053 0.052 605 chr14 75099632 75109559 + 0 NA Intergenic MIRb|SINE|MIR -25561 NM_000428 4053 Hs.512776 NM_000428 ENSG00000119681 LTBP2 C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3 latent transforming growth factor beta binding protein 2 protein-coding 2.205 1.155 1.728 0.891 0.245 0.083 0.728 0.165 0.097 0.118 0.135 0.158 0.571 0.064 0.096 0.401 0.287 0.166 0.279 0.528 0.631 1.154 0.286 0.630 0.682 0.292 0.681 1.901 nan 6.253 6.056 0.217 0.261 0.757 0.627 1.675 6.381 1.681 nan 0.381 0.407 0.231 0.086 0.728 0.158 1.134 0.052 0.010 8.638 300 chr11 8247278 8257642 + 0 NA intron (NM_001270428, intron 1 of 3) intron (NM_001270428, intron 1 of 3) 32965 NM_002315 4004 Hs.654426 NM_002315 ENSG00000166407 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 protein-coding 1.008 0.991 0.881 0.171 0.462 0.232 0.459 0.338 0.123 0.134 0.107 0.471 0.953 0.057 0.072 0.810 1.248 0.279 0.432 0.885 1.240 0.580 0.220 0.529 0.484 0.936 1.670 0.369 0.396 1.210 1.124 0.509 0.464 0.595 0.815 1.150 3.061 0.922 0.664 6.333 0.206 0.229 0.061 0.459 0.471 0.225 0.214 0.073 0.727 1428 chr5 142592947 142612414 + 0 NA 3' UTR (NM_001135608, exon 23 of 23) 3' UTR (NM_001135608, exon 23 of 23) 30615 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA nan 1.139 0.688 0.709 0.544 0.305 0.637 0.306 0.091 0.120 0.113 0.566 3.382 0.089 0.101 0.187 0.253 0.252 0.361 2.641 2.262 0.807 0.384 0.266 0.281 1.274 1.641 2.206 2.314 0.457 0.414 0.325 0.582 0.345 0.326 0.255 0.610 1.066 0.765 0.818 4.078 0.095 0.139 0.637 0.566 0.295 0.511 0.768 0.120 516 chr12 124980447 125063176 + 0 NA intron (NM_001077261, intron 1 of 47) intron (NM_001077261, intron 1 of 47) 30199 NM_001077261 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 1.743 1.836 1.543 0.812 1.030 0.520 1.906 0.904 0.145 0.758 0.503 1.674 3.291 0.849 0.099 1.493 2.387 1.391 2.569 2.250 2.304 nan 0.662 0.819 0.814 1.691 2.487 2.674 3.673 3.928 3.764 0.717 1.183 1.137 1.270 1.484 3.196 1.683 1.053 1.355 1.439 0.373 0.515 1.906 1.674 0.964 1.216 0.562 0.693 704 chr16 31468793 31472629 + 0 NA 5' UTR (NM_001105247, exon 1 of 6) 5' UTR (NM_001105247, exon 1 of 6) 394 NM_001105247 79798 Hs.732945 NM_024742 ENSG00000140691 ARMC5 AIMAH2 armadillo repeat containing 5 protein-coding 5.538 2.777 4.318 7.128 5.843 3.477 4.345 2.801 0.297 1.879 0.524 5.004 14.125 3.862 0.078 5.264 5.441 4.759 7.380 5.615 4.489 12.966 5.839 11.884 12.770 4.918 5.993 11.060 15.697 7.465 8.107 3.899 5.865 6.357 6.714 3.826 5.832 3.807 1.835 4.504 3.438 1.241 2.438 4.345 5.004 1.630 4.490 1.646 1.477 195 chr1 202125203 202140627 + 0 NA Intergenic Intergenic -2199 NM_002832 5778 Hs.402773 NM_002832 ENSG00000143851 PTPN7 BPTP-4|HEPTP|LC-PTP|LPTP|PTPNI protein tyrosine phosphatase, non-receptor type 7 protein-coding 1.418 0.993 2.716 0.148 0.392 0.259 0.305 0.174 0.104 0.174 0.174 0.202 0.444 0.105 0.077 3.291 5.375 1.441 1.284 0.972 0.978 0.764 0.197 nan nan 0.768 1.455 0.589 0.916 1.309 1.497 1.648 2.417 0.218 0.302 0.630 1.056 0.657 0.457 0.380 0.342 0.048 0.140 0.305 0.202 0.282 0.235 2.007 0.535 1040 chr2 66758934 66789978 + 0 NA intron (NM_002398, intron 8 of 12) intron (NM_002398, intron 8 of 12) -26706 NR_110156 100507073 Hs.667940 NR_110156 ENSG00000232046 LINC01798 - long intergenic non-protein coding RNA 1798 ncRNA 1.065 0.755 nan 0.150 3.422 1.668 1.196 0.216 0.103 0.448 0.308 0.570 0.895 0.063 0.118 0.412 0.330 0.518 0.625 0.440 0.596 nan 0.965 0.350 0.344 0.433 0.626 0.538 0.620 0.500 0.218 0.228 0.443 0.914 1.086 0.524 1.326 0.982 0.498 0.066 0.138 0.260 0.079 1.196 0.570 0.032 0.592 0.143 0.323 1601 chr7 111800109 111821175 + 0 NA intron (NM_014705, intron 1 of 51) Tigger15a|DNA|TcMar-Tigger 35820 NM_014705 9732 Hs.654652 NM_014705 ENSG00000128512 DOCK4 - dedicator of cytokinesis 4 protein-coding nan 0.882 1.058 0.262 1.082 0.518 0.932 0.128 0.061 0.597 0.551 0.995 0.534 0.062 0.104 0.407 0.410 0.260 0.390 0.758 0.873 2.601 0.789 0.211 0.264 2.230 2.857 0.484 0.485 1.317 0.937 0.170 0.390 1.567 2.576 0.789 2.585 1.645 1.135 0.226 0.157 0.380 0.064 0.932 0.995 0.124 0.126 0.052 0.585 1586 chr7 72236710 72258351 + 0 NA intron (NM_001145440, intron 6 of 14) intron (NM_001145440, intron 6 of 14) 51283 NM_001145440 441250 Hs.488614 NM_001145440 ENSG00000277149 TYW1B LINC00069|NCRNA00069|RSAFD2 tRNA-yW synthesizing protein 1 homolog B protein-coding nan 0.681 1.247 0.197 0.521 0.276 0.291 0.411 0.240 0.484 0.280 0.260 0.436 0.085 0.198 0.457 0.406 0.419 nan 0.413 0.540 1.338 0.391 0.237 0.223 1.441 nan 0.320 nan 0.635 0.409 0.179 0.302 0.283 0.528 0.628 1.328 3.175 1.358 0.110 0.234 0.044 0.510 0.291 0.260 0.219 2.108 0.062 0.416 972 chr19 47352582 47371001 + 0 NA Intergenic AluSz|SINE|Alu -7539 NM_004069 1175 Hs.119591 NM_004069 ENSG00000042753 AP2S1 AP17|CLAPS2|FBH3|FBHOk|HHC3 adaptor related protein complex 2 sigma 1 subunit protein-coding 3.077 2.125 2.887 2.400 2.307 1.251 1.524 1.859 0.220 1.008 0.567 2.117 3.791 2.063 0.119 1.965 1.961 2.016 3.315 3.696 3.445 3.896 1.749 4.561 4.817 2.448 3.234 4.275 5.706 2.952 3.028 1.380 2.506 1.857 2.371 3.011 4.380 2.537 1.150 1.868 4.261 0.569 0.830 1.524 2.117 0.911 1.524 0.699 1.211 319 chr11 20177583 20189681 + 0 NA Intergenic Intergenic -1762 NM_001029865 120237 Hs.558604 NM_001029865 ENSG00000109851 DBX1 - developing brain homeobox 1 protein-coding 0.598 0.697 0.441 0.409 1.418 0.527 0.232 0.057 0.068 0.130 0.089 0.171 0.326 0.018 0.069 0.422 0.300 0.114 0.176 0.591 0.597 1.691 0.362 0.156 0.178 0.499 0.742 0.998 1.498 0.708 0.535 0.180 0.272 0.236 0.206 0.174 0.506 0.631 0.560 0.115 0.055 0.047 6.137 0.232 0.171 0.049 0.017 0.041 0.255 21 chr1 7352741 7364750 + 0 NA intron (NM_015215, intron 5 of 22) intron (NM_015215, intron 5 of 22) -472584 NM_004781 9341 Hs.66708 NM_004781 ENSG00000049245 VAMP3 CEB vesicle associated membrane protein 3 protein-coding 1.003 nan 0.748 0.635 0.574 0.360 0.956 0.768 0.064 0.234 0.173 1.035 6.857 0.063 0.107 0.299 0.376 0.184 0.345 3.211 3.002 0.828 0.279 0.187 0.214 0.204 nan nan 1.827 nan 0.374 0.401 0.492 0.216 0.443 0.313 0.735 0.856 0.700 1.204 1.606 0.078 0.257 0.956 1.035 0.105 0.383 0.162 0.092 1648 chr8 61563318 61568377 + 0 NA Intergenic Intergenic -25477 NM_017780 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 8.310 2.877 9.430 5.331 4.238 2.084 3.214 0.423 0.076 3.218 1.662 6.668 7.816 2.478 0.085 2.507 3.766 2.104 3.336 14.097 11.041 7.761 2.309 2.356 2.545 2.330 nan 3.631 5.737 nan 9.313 1.991 4.332 9.340 9.528 4.443 5.777 5.267 2.883 1.618 6.298 2.543 2.279 3.214 6.668 1.247 5.763 1.237 1.888 242 chr1 246308987 246331309 + 0 NA intron (NM_001167740, intron 5 of 11) intron (NM_001167740, intron 5 of 11) 260566 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding nan 1.267 nan 1.624 1.042 0.709 0.327 0.250 0.068 0.630 0.525 1.311 4.885 0.045 0.082 0.605 0.783 1.438 1.780 2.781 2.671 1.592 0.453 0.590 0.633 0.750 1.007 2.867 3.060 0.299 0.148 0.397 0.759 1.317 1.333 0.538 1.266 0.882 0.651 2.941 0.683 0.252 0.126 0.327 1.311 0.391 1.026 0.671 0.299 1471 chr6 31164171 31173910 + 0 NA intron (NR_026791, intron 1 of 1) MLT1G1|LTR|ERVL-MaLR 3503 NR_026791 253018 Hs.659818 NR_026791 ENSG00000206344 HCG27 bCX101P6.9|bPG299F13.9|bQB115I13.2 HLA complex group 27 (non-protein coding) ncRNA nan 4.272 nan 5.048 7.276 4.086 1.849 1.612 0.595 2.118 0.692 5.200 3.935 2.040 0.166 2.560 2.921 4.897 nan nan 2.304 9.148 6.316 3.632 3.873 0.585 0.780 8.226 11.495 0.398 0.259 1.322 2.077 3.610 4.437 0.175 0.457 2.714 1.710 1.768 3.763 0.732 0.309 1.849 5.200 0.372 1.413 1.627 0.157 898 chr18 60796810 60830902 + 0 NA intron (NM_000633, intron 2 of 2) intron (NM_000633, intron 2 of 2) 172757 NM_000657 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2, apoptosis regulator protein-coding 0.830 0.797 1.813 2.213 1.703 0.796 0.431 0.227 0.071 0.606 0.260 1.593 5.463 0.045 0.066 2.158 2.517 2.415 2.209 2.155 1.994 2.810 0.823 9.049 nan 0.209 nan 5.022 4.505 0.469 0.293 2.574 3.780 1.136 1.849 0.141 0.183 5.175 2.814 1.873 2.426 0.322 0.572 0.431 1.593 0.302 1.570 3.699 0.051 1131 chr20 678087 714271 + 0 NA Intergenic L1MEc|LINE|L1 -39356 NM_033129 85508 Hs.355284 NM_033129 ENSG00000215397 SCRT2 ZNF898B scratch family transcriptional repressor 2 protein-coding 1.002 1.079 1.063 0.121 0.298 0.124 0.274 0.084 0.077 0.139 0.140 0.064 0.828 0.192 0.082 3.611 5.030 0.229 0.284 0.282 0.275 0.376 0.128 0.267 0.273 0.446 0.703 0.229 0.219 0.920 0.726 0.609 0.724 0.082 0.108 0.422 0.657 0.209 0.234 0.042 0.076 0.027 0.046 0.274 0.064 0.793 0.108 0.292 0.058 129 chr1 154578976 154581903 + 0 NA intron (NM_001025107, intron 1 of 14) CpG 285 NM_015841 103 Hs.12341 NM_001111 ENSG00000160710 ADAR ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136 adenosine deaminase, RNA specific protein-coding nan 6.014 6.226 4.369 6.030 2.856 6.049 9.600 1.558 5.249 2.834 6.048 19.986 8.649 0.407 4.371 4.844 10.496 16.525 13.667 12.566 8.876 3.087 5.334 5.814 2.986 5.075 10.129 16.912 7.383 7.102 13.107 15.570 6.957 7.722 0.783 0.959 4.249 2.194 5.450 12.924 1.011 3.032 6.049 6.048 0.823 3.649 7.247 0.168 94 chr1 61582202 61614305 + 0 NA intron (NM_001145511, intron 2 of 10) intron (NM_001145511, intron 2 of 10) 50273 NM_005595 4774 Hs.740757 NM_005595 ENSG00000162599 NFIA CTF|NF-I/A|NF1-A|NFI-A|NFI-L nuclear factor I A protein-coding 1.162 1.461 nan 0.419 1.369 0.757 0.342 1.784 0.166 0.884 0.459 0.186 0.950 0.105 0.128 0.568 0.975 0.692 1.121 0.507 0.563 0.133 0.077 0.300 0.285 nan nan 3.019 nan 0.703 0.516 0.275 0.438 1.391 2.354 0.206 0.475 2.351 1.222 2.136 0.643 0.330 0.362 0.342 0.186 0.136 0.958 0.145 0.073 993 chr19 50429899 50434334 + 0 NA promoter-TSS (NM_001193646) promoter-TSS (NM_001193646) 157 NM_012068 22809 Hs.9754 NM_012068 ENSG00000169136 ATF5 ATFX|HMFN0395 activating transcription factor 5 protein-coding 7.995 3.655 6.328 6.097 16.424 9.602 5.962 2.631 0.685 3.492 1.478 6.823 8.760 8.611 0.285 8.091 8.367 6.774 8.896 14.457 12.978 10.653 6.283 20.352 21.398 7.057 8.821 9.900 14.460 11.868 12.940 9.251 13.670 10.421 11.638 8.372 8.998 6.124 3.439 7.270 9.261 2.578 5.573 5.962 6.823 2.705 3.381 4.186 4.019 936 chr19 18127569 18142521 + 0 NA Intergenic Intergenic 16068 NM_001286826 27106 Hs.515249 NM_015683 ENSG00000105643 ARRDC2 CLONE24945|PP2703 arrestin domain containing 2 protein-coding 2.420 1.317 1.263 1.649 0.479 0.242 0.311 0.437 0.195 0.357 0.152 0.184 0.587 0.152 0.090 0.291 0.169 0.566 1.231 0.562 0.612 0.728 0.229 0.241 0.192 1.704 2.781 2.890 3.807 3.727 2.917 0.234 0.161 0.853 1.123 1.338 2.515 2.115 1.123 0.145 0.164 0.211 0.053 0.311 0.184 1.453 1.757 0.026 0.767 345 chr11 61520061 61525925 + 0 NA intron (NM_013279, intron 1 of 25) intron (NM_013279, intron 1 of 25) 132 NM_013279 745 Hs.473109 NM_013279 ENSG00000124920 MYRF C11orf9|MRF|Ndt80|pqn-47 myelin regulatory factor protein-coding nan 0.786 0.718 0.161 10.167 5.123 0.341 0.289 0.054 0.068 0.117 0.249 0.664 0.566 0.142 0.840 1.126 1.070 1.967 1.291 1.195 1.144 0.394 0.819 0.872 0.699 0.925 0.582 1.004 0.542 0.317 3.560 6.863 0.469 0.825 0.369 0.742 0.441 0.302 0.076 0.151 0.049 0.041 0.341 0.249 0.106 0.140 5.879 0.042 168 chr1 165407426 165434821 + 0 NA Intergenic Intergenic -6531 NM_001256570 6258 Hs.26550 NM_006917 ENSG00000143171 RXRG NR2B3|RXRC retinoid X receptor gamma protein-coding 1.272 nan 1.189 0.729 0.551 0.248 0.513 0.154 0.071 0.149 0.209 0.124 2.001 0.032 0.109 0.465 0.414 0.404 0.876 0.673 nan 0.207 0.120 0.130 0.127 0.224 0.364 1.415 nan 0.948 0.786 0.393 0.615 1.232 2.889 1.774 4.344 0.408 0.444 0.065 0.189 0.284 0.241 0.513 0.124 0.272 0.037 0.094 2.160 770 chr17 37023139 37040577 + 0 NA intron (NR_073384, intron 1 of 7) intron (NR_073384, intron 1 of 7) 5746 NM_001271608 3927 Hs.741156 NM_006148 ENSG00000002834 LASP1 Lasp-1|MLN50 LIM and SH3 protein 1 protein-coding nan 1.923 1.370 0.963 2.690 1.515 1.405 1.510 0.340 0.864 0.469 1.255 5.733 2.807 0.107 2.776 4.094 1.416 2.373 nan 1.935 2.623 0.823 3.499 3.992 1.092 1.457 2.791 3.584 nan 1.731 1.102 2.409 1.428 1.651 1.284 3.078 1.067 0.604 1.041 1.609 0.317 0.749 1.405 1.255 0.467 1.071 1.206 1.117 1602 chr7 113721866 113731014 + 0 NA promoter-TSS (NR_033766) promoter-TSS (NR_033766) 75 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding nan 0.727 4.851 2.130 1.744 0.755 0.888 1.137 0.174 3.174 1.538 4.758 6.563 0.475 0.115 0.871 0.587 2.090 2.597 0.426 0.512 0.757 0.257 3.018 3.110 3.579 4.692 3.793 8.081 2.901 3.398 0.173 0.518 10.551 9.091 1.849 2.358 1.004 0.591 0.061 6.087 3.010 1.683 0.888 4.758 0.766 1.723 0.142 0.648 541 chr13 73711959 73723120 + 0 NA Intergenic AluSx|SINE|Alu 84609 NM_001730 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding nan 2.354 0.743 1.172 1.035 0.656 1.066 0.565 0.164 0.110 0.117 1.944 4.488 0.204 0.113 0.513 0.375 0.534 1.312 1.222 1.118 nan 3.267 0.091 0.138 0.059 0.128 1.116 1.822 nan 0.163 0.240 0.564 0.079 0.113 0.351 nan 0.290 0.265 0.281 2.480 0.597 1.066 1.944 0.026 0.128 0.053 0.077 1412 chr5 88165204 88180613 + 0 NA intron (NM_001193347, intron 2 of 11) UCON20|Unknown|Unknown -6239 NR_109941 101929423 Hs.130138 NR_104031 ENSG00000248309 MEF2C-AS1 - MEF2C antisense RNA 1 ncRNA 0.618 1.022 0.468 0.289 0.333 0.269 0.049 0.981 0.084 0.529 0.396 0.124 2.426 0.278 0.113 0.301 0.231 0.529 0.891 0.691 0.474 0.958 0.322 2.283 2.442 3.028 3.604 0.455 0.516 0.789 0.688 0.532 1.246 0.345 0.245 0.257 nan 0.819 0.463 0.021 0.276 0.031 0.049 0.124 1.105 1.227 0.129 1028 chr2 28611955 28621228 + 0 NA exon (NM_005253, exon 1 of 4) exon (NM_005253, exon 1 of 4) 812 NM_005253 2355 Hs.220971 NM_005253 ENSG00000075426 FOSL2 FRA2 FOS like 2, AP-1 transcription factor subunit protein-coding 3.048 2.283 3.259 4.655 4.211 2.047 3.642 4.792 0.320 1.703 0.792 2.142 14.570 8.455 0.187 1.654 2.721 3.181 8.427 3.361 2.944 4.386 1.587 7.809 7.891 2.193 3.084 4.049 nan 4.327 5.719 0.753 1.754 2.702 2.109 0.319 0.637 1.655 0.860 4.068 2.200 0.492 4.293 3.642 2.142 2.192 3.770 0.313 0.533 530 chr13 43181058 43195435 + 0 NA Intergenic MLT2B1|LTR|ERVL 39955 NM_003701 8600 Hs.333791 NM_003701 ENSG00000120659 TNFSF11 CD254|ODF|OPGL|OPTB2|RANKL|TNLG6B|TRANCE|hRANKL2|sOdf tumor necrosis factor superfamily member 11 protein-coding 0.724 0.653 0.600 0.221 0.346 0.193 0.135 0.073 0.124 0.426 0.288 0.208 0.394 0.045 0.066 0.633 0.469 0.089 0.133 2.620 2.506 5.315 1.646 0.170 0.134 0.237 0.403 0.311 0.362 0.469 0.254 0.265 0.474 0.116 0.116 0.273 0.422 1.921 1.087 0.748 0.989 0.027 0.059 0.135 0.208 0.054 0.021 0.104 0.060 814 chr17 70301089 70308463 + 0 NA Intergenic Intergenic -34176 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 1.053 0.865 0.585 0.727 0.719 0.304 0.275 0.132 0.087 0.149 0.112 0.455 0.559 0.059 0.084 2.420 3.832 8.652 2.491 0.435 0.430 0.566 0.263 1.280 1.479 nan 1.012 0.698 0.809 0.498 0.318 1.082 1.800 0.156 0.219 0.242 0.189 nan 0.713 0.016 0.054 0.030 0.127 0.275 0.455 0.054 0.081 0.728 0.034 1651 chr8 68402679 68421580 + 0 NA intron (NM_020361, intron 6 of 10) L1MD1|LINE|L1 156060 NR_136223 102724708 Hs.636330 NR_136223 LOC102724708 - uncharacterized LOC102724708 ncRNA 1.108 0.877 0.578 0.485 0.399 0.260 0.292 0.745 0.102 0.345 0.266 3.997 2.406 0.051 0.095 0.292 0.153 0.389 0.604 1.095 1.063 0.390 0.099 0.111 0.108 0.389 nan 0.130 0.138 nan 0.187 0.204 0.326 0.475 0.740 0.232 0.342 1.892 0.956 0.159 0.365 0.147 0.122 0.292 3.997 0.010 0.107 0.179 0.074 1121 chr2 240142148 240188190 + 0 NA intron (NM_006037, intron 2 of 26) intron (NM_006037, intron 2 of 26) -48016 NR_026664 85009 Hs.744565 NM_032923 MGC16025 - uncharacterized LOC85009 ncRNA 0.917 nan 1.318 0.651 0.798 0.432 0.380 0.055 0.052 0.422 0.213 0.845 3.035 0.113 0.105 1.159 1.476 0.680 0.966 1.100 0.971 0.847 0.250 0.757 0.807 0.636 0.908 3.486 3.637 0.363 0.264 0.882 1.050 0.170 0.267 0.150 0.249 0.930 0.609 5.352 3.393 0.033 0.062 0.380 0.845 0.137 1.770 0.293 0.051 1233 chr22 39914468 39932231 + 0 NA Intergenic AluSx|SINE|Alu 5511 NM_194326 91582 Hs.526933 NM_194326 ENSG00000187051 RPS19BP1 AROS|S19BP ribosomal protein S19 binding protein 1 protein-coding 3.488 nan 3.029 2.737 4.717 2.536 2.650 1.354 0.175 1.562 0.800 5.516 4.845 3.413 0.153 3.999 4.321 3.727 5.139 5.545 5.212 4.949 2.228 3.766 3.714 2.464 nan 5.396 6.632 nan 5.446 1.810 3.246 3.027 4.196 3.003 3.952 2.122 1.086 2.172 2.962 0.836 2.200 2.650 5.516 1.274 2.616 0.964 1.205 1214 chr22 18110079 18123525 + 0 NA Intergenic L2b|LINE|L2 -4548 NM_001270731 23786 Hs.631672 NM_015367 ENSG00000099968 BCL2L13 BCL-RAMBO|Bcl2-L-13|MIL1 BCL2 like 13 protein-coding 3.106 nan 2.133 1.505 2.408 1.336 1.843 2.133 0.269 1.209 0.554 2.184 3.756 1.802 0.087 2.734 2.486 3.919 7.585 2.513 2.482 3.491 1.767 9.978 10.571 3.260 4.124 3.097 4.686 4.580 4.199 1.521 2.480 3.286 5.094 2.626 2.877 3.355 2.088 0.802 1.191 0.406 0.773 1.843 2.184 0.837 1.501 0.641 0.865 827 chr17 77016049 77033281 + 0 NA promoter-TSS (NR_040019) promoter-TSS (NR_040019) -928 NR_040019 100507410 Hs.666723 NR_040018 ENSG00000265096 C1QTNF1-AS1 - C1QTNF1 antisense RNA 1 ncRNA 1.380 2.750 1.625 0.321 0.961 0.388 0.960 2.364 0.395 0.543 0.213 0.166 2.129 0.126 0.091 0.740 0.874 0.401 1.244 0.942 0.870 3.025 0.852 0.305 0.280 nan 0.860 0.506 0.730 1.817 1.650 0.282 0.387 1.051 1.091 0.229 0.469 nan 0.866 0.897 3.872 0.216 0.046 0.960 0.166 0.209 0.817 0.114 0.087 624 chr14 100841120 100893550 + 0 NA intron (NM_024515, intron 2 of 6) intron (NM_024515, intron 2 of 6) 24502 NM_024515 79446 Hs.497600 NM_024515 ENSG00000176473 WDR25 C14orf67 WD repeat domain 25 protein-coding 2.108 1.713 1.165 0.573 0.897 0.493 2.680 0.895 0.199 0.373 0.213 0.326 1.099 0.416 0.134 0.474 0.428 0.600 1.043 0.937 1.072 1.088 0.369 0.390 0.404 0.791 1.407 1.447 1.717 1.627 1.275 0.545 0.725 1.202 1.860 0.552 1.226 1.785 0.993 1.140 0.350 0.193 0.178 2.680 0.326 0.797 1.728 0.177 0.297 1008 chr2 5453377 5458025 + 0 NA Intergenic Intergenic 375549 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 2.056 0.841 1.872 0.247 1.234 0.952 0.701 0.096 0.072 0.305 0.244 1.122 1.074 0.046 0.110 0.410 0.647 0.343 1.873 7.935 6.283 1.589 0.456 0.020 0.096 0.367 0.571 0.751 0.748 2.271 2.934 0.085 0.144 1.445 1.866 2.805 6.894 0.189 0.132 0.940 0.535 0.411 1.346 0.701 1.122 3.057 0.043 0.021 1.839 454 chr12 16680258 16693400 + 0 NA Intergenic L2c|LINE|L2 71484 NM_001243611 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 0.755 1.486 1.029 2.091 0.327 0.243 0.401 0.057 0.061 1.308 1.086 1.173 3.653 0.066 0.087 0.334 0.494 1.563 1.381 nan 1.877 9.785 3.242 0.315 0.379 0.246 0.332 3.448 3.800 0.394 0.247 0.212 0.419 0.950 0.648 0.421 0.591 1.431 0.726 4.322 0.146 0.260 0.319 0.401 1.173 0.044 0.054 0.105 0.074 788 chr17 41620100 41623889 + 0 NA 3' UTR (NM_001322219, exon 24 of 24) 3' UTR (NM_001322219, exon 24 of 24) 1311 NM_001986 2118 Hs.434059 NM_001986 ENSG00000175832 ETV4 E1A-F|E1AF|PEA3|PEAS3 ETS variant 4 protein-coding 2.643 2.259 nan 0.905 1.147 0.804 1.225 1.478 0.128 0.203 0.189 0.063 3.780 3.112 0.074 6.602 7.277 11.027 7.493 0.430 nan 3.327 1.233 1.506 1.257 0.474 1.207 0.964 nan 0.747 0.281 0.876 0.656 1.389 2.083 0.213 0.249 0.377 0.495 0.059 0.164 0.126 0.042 1.225 0.063 0.155 2.176 0.026 0.034 573 chr14 23979245 23987485 + 0 NA intron (NR_046051, intron 3 of 4) intron (NR_046051, intron 3 of 4) 1346 NR_046052 79178 Hs.655179 NM_024328 ENSG00000259431 THTPA THTP|THTPASE thiamine triphosphatase protein-coding 4.744 1.386 3.146 0.633 0.901 0.543 0.195 0.118 0.135 0.401 0.351 1.682 1.288 0.036 0.096 0.648 1.238 0.112 0.170 7.065 6.563 0.974 0.341 0.308 0.279 2.200 2.985 0.588 nan 9.533 9.053 0.311 0.520 1.628 0.895 0.161 0.217 2.451 1.127 6.838 0.075 0.568 0.134 0.195 1.682 1.560 1.058 0.060 0.031 982 chr19 49117102 49128663 + 0 NA promoter-TSS (NM_000979) promoter-TSS (NM_000979) 92 NM_001204159 56848 Hs.528006 NM_020126 ENSG00000063176 SPHK2 SK 2|SK-2|SPK 2|SPK-2 sphingosine kinase 2 protein-coding 3.704 1.630 2.535 2.513 5.884 3.209 2.393 1.118 0.209 1.083 0.442 3.205 3.670 2.522 0.116 2.965 2.741 3.101 4.442 5.156 4.697 5.539 2.420 7.784 8.077 3.320 4.425 6.264 8.233 6.045 6.062 2.311 3.428 2.627 2.554 3.947 5.153 3.066 1.512 1.294 3.384 0.495 1.166 2.393 3.205 1.370 1.003 1.271 1.880 686 chr16 4287475 4312272 + 0 NA intron (NR_039999, intron 2 of 2) intron (NR_039999, intron 2 of 2) 3917 NR_039999 100507501 Hs.632979 NR_039999 ENSG00000262468 LINC01569 - long intergenic non-protein coding RNA 1569 ncRNA 1.296 nan 1.179 2.883 2.090 1.234 1.376 0.185 0.092 0.601 0.244 3.086 2.216 0.292 0.088 2.215 2.195 0.619 0.668 3.081 2.840 nan 2.396 2.944 2.742 0.626 nan 3.050 3.795 3.271 3.268 3.172 4.365 0.495 0.378 1.619 2.880 2.488 1.254 1.356 1.358 0.084 0.253 1.376 3.086 0.291 0.607 3.612 1.043 1659 chr8 77686259 77707991 + 0 NA intron (NM_024721, intron 4 of 10) intron (NM_024721, intron 4 of 10) -101615 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 1.248 0.861 0.868 0.113 0.297 0.177 0.737 2.079 0.149 0.151 0.122 0.083 0.253 0.105 0.094 0.345 0.274 1.669 1.840 0.484 0.663 0.698 0.255 0.748 0.753 0.499 0.839 0.181 0.259 0.474 0.185 0.766 1.547 2.845 4.878 0.225 0.570 0.418 0.411 0.182 0.233 0.778 0.018 0.737 0.083 0.009 0.061 0.501 0.062 1013 chr2 16051461 16188966 + 0 NA Intergenic AluJb|SINE|Alu -37842 NM_001329968 10408 Hs.651453 NM_006316 ENSG00000233718 MYCNOS MYCN-AS1|N-CYM|NCYM|NYCM MYCN opposite strand protein-coding 6.517 3.491 7.495 0.369 0.184 0.104 0.114 0.058 0.079 0.096 0.102 0.052 0.772 0.048 0.098 0.578 0.530 0.463 0.765 0.575 0.507 0.801 0.288 0.584 0.564 0.219 0.352 0.459 nan 0.793 0.548 13.595 15.404 17.716 18.199 0.496 nan 0.166 0.291 0.899 0.796 6.373 0.033 0.114 0.052 0.026 0.301 6.955 0.154 492 chr12 77819647 77834789 + 0 NA Intergenic Intergenic -367858 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding nan 0.732 0.581 0.122 0.357 0.221 0.085 0.612 0.159 0.113 0.119 0.063 0.298 0.036 0.070 0.347 0.263 0.221 0.223 0.485 0.532 0.183 0.079 0.275 0.279 4.788 5.255 nan 0.380 0.466 0.227 0.157 0.246 0.091 0.174 0.367 0.656 nan 0.633 0.073 0.325 0.006 0.062 0.085 0.063 0.025 0.033 0.033 0.132 426 chr12 6601640 6604442 + 0 NA promoter-TSS (NM_016497) promoter-TSS (NM_016497) -257 NM_014865 9918 Hs.5719 NM_014865 ENSG00000010292 NCAPD2 CAP-D2|CNAP1|hCAP-D2 non-SMC condensin I complex subunit D2 protein-coding 7.386 nan 5.447 14.779 5.623 3.178 4.750 2.322 0.171 3.661 2.352 8.755 16.540 8.145 0.182 4.847 3.919 10.038 14.385 18.770 15.419 18.767 10.492 21.020 21.498 8.442 10.982 7.135 10.612 10.880 10.702 4.114 5.795 10.770 15.284 9.132 11.178 3.152 1.340 6.922 6.667 2.368 6.064 4.750 8.755 7.484 1.982 2.807 3.910 228 chr1 232054824 232078591 + 0 NA intron (NR_126441, intron 1 of 3) intron (NR_126441, intron 1 of 3) 5127 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 1.426 1.149 2.514 1.983 0.892 0.382 0.716 0.272 0.197 0.738 0.259 1.143 1.318 0.036 0.100 0.377 0.512 0.780 2.716 0.890 0.883 nan 3.890 0.259 0.222 0.705 1.091 nan 2.537 0.619 0.374 0.152 0.200 0.642 0.538 0.548 1.154 nan 0.918 1.363 0.162 0.040 1.497 0.716 1.143 0.294 2.630 0.083 0.159 1715 chr9 13932604 13983382 + 0 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 30023 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA nan nan 0.854 0.229 1.288 0.716 0.395 0.190 0.083 0.290 0.275 0.431 0.815 0.047 0.084 0.224 0.131 1.031 1.768 0.600 0.736 1.570 0.644 0.118 0.115 4.128 6.005 0.792 0.712 0.366 0.164 0.155 0.212 1.092 0.890 0.200 0.358 1.547 1.118 4.466 0.131 0.298 0.107 0.395 0.431 0.015 0.070 0.051 0.051 165 chr1 164715889 164760404 + 0 NA TTS (NR_038072) TTS (NR_038072) 5732 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 1.444 nan 1.108 0.715 1.776 0.904 1.508 2.188 0.315 0.426 0.269 1.064 1.128 0.039 0.107 0.543 0.438 1.528 6.385 1.224 nan 2.264 1.245 0.171 0.164 3.989 4.561 1.653 nan 0.419 0.223 0.434 0.566 0.741 0.879 0.366 0.764 1.370 0.874 0.451 1.632 0.129 0.247 1.508 1.064 0.052 0.239 0.146 0.268 850 chr18 19758628 19774735 + 0 NA intron (NM_005257, intron 6 of 6) intron (NM_005257, intron 6 of 6) 17283 NM_005257 2627 Hs.514746 NM_005257 ENSG00000141448 GATA6 - GATA binding protein 6 protein-coding 0.699 0.869 1.449 0.376 0.450 0.209 0.160 0.117 0.040 0.552 0.212 0.052 0.329 0.051 0.079 0.330 0.236 1.218 2.068 0.368 0.472 4.500 1.836 0.257 0.299 0.130 0.122 0.112 0.118 0.481 0.265 0.236 0.431 0.291 0.233 0.300 0.645 0.437 0.555 0.017 0.121 0.022 0.024 0.160 0.052 0.024 0.025 0.092 0.163 1628 chr8 29194263 29217399 + 0 NA 5' UTR (NM_057158, exon 1 of 5) 5' UTR (NM_057158, exon 1 of 5) 491 NM_057158 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding nan 2.516 nan 1.443 3.242 1.966 0.996 0.213 0.083 0.224 0.112 2.095 6.140 0.085 0.107 1.133 1.253 2.127 3.597 nan 3.226 nan 1.992 0.387 0.401 0.170 0.310 3.341 3.830 2.869 2.505 0.285 0.357 2.017 1.899 0.487 1.068 nan nan 1.864 0.123 0.218 0.114 0.996 2.095 0.310 2.965 0.056 0.251 508 chr12 116551625 116573261 + 0 NA intron (NM_015335, intron 2 of 30) intron (NM_015335, intron 2 of 30) 24016 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA nan nan 0.957 0.311 0.485 0.199 1.025 0.637 0.165 0.441 0.300 0.515 0.539 0.281 0.167 0.430 0.424 0.255 0.424 nan nan nan 0.200 0.520 0.529 2.202 2.881 nan nan 1.112 0.809 0.283 0.445 2.809 4.612 1.048 1.704 nan 0.852 1.406 2.043 0.998 0.124 1.025 0.515 0.081 0.361 0.219 0.442 733 chr17 6914526 6919411 + 0 NA intron (NR_037715, intron 2 of 3) intron (NR_037715, intron 2 of 3) -1088 NM_001142798 124944 Hs.511801 NM_174893 ENSG00000258315 C17orf49 BAP18|HEPIS chromosome 17 open reading frame 49 protein-coding 5.286 3.126 3.063 2.968 4.794 2.608 3.749 3.976 0.361 1.725 0.555 5.723 8.916 12.281 0.594 6.472 6.969 7.952 11.973 8.644 9.186 6.304 4.325 8.911 9.212 4.160 5.022 7.430 11.273 3.421 3.226 3.994 5.663 2.674 3.504 6.378 7.897 2.373 1.289 4.021 3.920 0.798 1.415 3.749 5.723 1.683 5.900 1.052 2.880 549 chr13 99047256 99073345 + 0 NA intron (NM_005766, intron 13 of 26) intron (NM_005766, intron 13 of 26) 114079 NM_003576 8428 Hs.508514 NM_003576 ENSG00000102572 STK24 HEL-S-95|MST3|MST3B|STE20|STK3 serine/threonine kinase 24 protein-coding 0.889 2.571 1.211 0.609 0.444 0.228 0.967 0.076 0.076 0.366 0.228 1.045 1.259 0.072 0.062 0.568 0.539 0.286 0.453 1.145 1.240 1.796 0.571 0.141 0.167 0.237 nan 2.687 2.541 0.303 0.191 0.370 0.510 0.739 0.737 0.368 nan 0.603 0.235 4.953 2.910 0.171 0.252 0.967 1.045 0.049 0.566 0.099 0.114 270 chr10 49792701 49818231 + 0 NA intron (NR_045675, intron 2 of 10) intron (NR_045675, intron 2 of 10) 7710 NM_001347735 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 0.691 nan 5.126 0.430 0.660 0.351 0.075 0.092 0.075 0.093 0.094 2.307 2.109 0.068 0.079 0.591 0.867 0.227 0.322 1.253 1.022 2.462 0.443 0.773 0.805 0.202 0.383 1.331 1.488 0.589 0.610 0.177 0.227 0.563 0.684 0.165 0.236 0.502 0.415 1.102 0.219 0.175 0.402 0.075 2.307 0.130 0.020 0.027 0.088 1110 chr2 219844386 219850284 + 0 NA intron (NM_017521, intron 2 of 2) MER91A|DNA|hAT-Tip100 3044 NM_017521 54738 Hs.234759 NM_017521 ENSG00000163497 FEV HSRNAFEV|PET-1 FEV, ETS transcription factor protein-coding nan 2.167 nan 0.773 1.687 0.722 3.971 0.052 0.044 0.375 0.152 1.089 2.471 0.767 0.076 1.064 1.241 0.152 0.167 1.872 1.228 1.939 0.352 0.165 0.193 1.052 1.220 0.958 nan 2.702 2.289 0.941 2.124 0.192 0.289 0.414 1.563 0.440 0.217 9.809 0.136 0.130 0.253 3.971 1.089 0.408 1.249 1.693 0.413 322 chr11 31828240 31839575 + 0 NA promoter-TSS (NM_001310158) promoter-TSS (NM_001310158) -17 NM_001310158 5080 Hs.270303 NM_000280 ENSG00000007372 PAX6 AN|AN2|D11S812E|FVH1|MGDA|WAGR paired box 6 protein-coding 2.565 0.704 nan 1.084 0.632 0.383 1.416 1.274 0.087 1.044 0.496 0.210 1.044 1.196 0.111 0.743 0.649 5.223 6.323 0.870 0.719 1.624 0.713 0.415 0.327 5.353 7.537 0.111 0.090 0.761 0.465 0.414 0.637 2.719 2.166 0.202 nan 0.967 0.760 0.580 0.102 0.438 2.059 1.416 0.210 1.345 0.009 0.113 0.032 1592 chr7 99693552 99700858 + 0 NA intron (NM_005916, intron 3 of 14) intron (NM_005916, intron 3 of 14) 1198 NM_182776 4176 Hs.438720 NM_005916 ENSG00000166508 MCM7 CDC47|MCM2|P1.1-MCM3|P1CDC47|P85MCM|PNAS146|PPP1R104 minichromosome maintenance complex component 7 protein-coding nan 2.085 nan 5.637 6.214 3.520 3.550 2.055 0.285 3.524 1.251 4.498 8.315 6.072 0.226 7.250 6.225 5.183 7.390 9.394 10.608 5.826 4.648 10.657 10.662 2.606 3.923 6.287 9.845 6.458 6.999 5.242 7.557 6.129 7.177 7.330 nan 4.363 2.088 3.726 4.677 1.722 3.022 3.550 4.498 1.174 1.789 2.302 2.029 991 chr19 50378297 50382737 + 0 NA promoter-TSS (NM_024682) promoter-TSS (NM_024682) 127 NM_001098633 84335 Hs.515542 NM_032375 ENSG00000204673 AKT1S1 Lobe|PRAS40 AKT1 substrate 1 protein-coding 7.369 4.427 5.594 6.500 13.338 6.798 4.787 4.894 0.328 2.590 1.128 6.903 13.186 8.024 0.215 8.731 7.337 8.065 13.276 10.112 10.605 11.289 11.066 26.536 29.012 8.132 9.542 11.343 14.508 15.276 14.162 4.145 5.447 7.113 10.081 11.062 10.296 5.435 2.711 4.935 9.060 1.721 3.468 4.787 6.903 2.371 4.045 3.237 4.400 1752 chr9 126760787 126781400 + 0 NA intron (NR_135129, intron 1 of 1) CpG 582 NR_135129 100505588 Hs.547168 NR_135129 ENSG00000236668 LOC100505588 - uncharacterized LOC100505588 ncRNA nan nan 0.608 4.106 1.400 0.692 1.784 0.284 0.071 2.200 0.959 4.768 nan 0.509 0.057 0.360 0.398 0.582 0.673 2.210 1.569 0.986 0.391 0.367 0.507 1.729 nan 1.664 2.462 4.161 4.235 0.643 1.152 0.469 0.421 0.319 0.468 nan 1.345 0.800 0.118 0.106 0.172 1.784 4.768 0.716 1.522 0.241 0.123 1642 chr8 53240382 53267403 + 0 NA intron (NM_014682, intron 2 of 25) intron (NM_014682, intron 2 of 25) 68547 NM_014682 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18, C2H2C-type zinc finger protein-coding 1.757 nan 0.780 3.253 3.213 1.597 0.493 0.103 0.035 1.454 0.576 2.993 2.011 0.028 0.118 0.576 0.717 0.455 0.747 2.672 2.861 4.669 2.418 0.823 0.884 1.360 nan 3.054 3.435 0.847 0.687 0.479 0.904 2.269 2.913 0.197 0.484 4.493 2.181 0.041 1.651 0.397 0.064 0.493 2.993 0.179 2.549 0.802 0.078 26 chr1 8561838 8587151 + 0 NA intron (NM_012102, intron 8 of 23) intron (NM_012102, intron 8 of 23) -19521 NR_132752 106632271 NR_132752 SNORD128 ZL43 small nucleolar RNA, C/D box 128 snoRNA 1.451 nan 1.333 0.390 0.463 0.240 0.374 0.670 0.154 0.447 0.229 0.213 0.619 0.252 0.120 0.390 0.576 0.502 1.012 1.167 1.302 0.779 0.363 0.861 0.833 1.349 nan nan 3.236 nan 1.938 0.496 0.662 0.176 0.186 2.262 5.825 1.040 0.681 0.124 0.440 0.048 0.193 0.374 0.213 0.075 0.105 0.217 1.303 818 chr17 73868857 73875411 + 0 NA exon (NM_033452, exon 4 of 6) exon (NM_033452, exon 4 of 6) 2522 NM_033452 91107 Hs.293660 NM_033452 ENSG00000132481 TRIM47 GOA|RNF100 tripartite motif containing 47 protein-coding 4.724 5.276 1.478 4.489 3.817 2.059 1.487 3.692 0.647 4.709 1.694 1.249 3.639 1.266 0.131 2.526 4.462 0.495 1.154 0.801 0.748 2.970 1.052 4.595 4.527 nan 1.536 6.239 8.782 1.194 0.995 0.616 0.713 3.545 2.963 0.641 1.001 nan 1.568 3.329 0.027 0.555 0.084 1.487 1.249 0.771 5.266 0.181 0.191 945 chr19 31173034 31188485 + 0 NA Intergenic Intergenic 317459 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 1.962 0.947 1.627 0.098 0.326 0.177 1.168 0.122 0.074 0.051 0.059 0.387 0.517 0.069 0.088 0.651 0.837 0.367 0.446 0.176 0.257 0.216 0.082 0.080 0.090 0.405 0.810 0.121 0.153 nan 0.151 0.342 0.403 0.046 0.128 2.689 6.745 0.439 0.553 0.286 0.075 0.012 0.115 1.168 0.387 0.529 0.052 0.083 2.643 1443 chr5 177364927 177386683 + 0 NA Intergenic MIR|SINE|MIR 47438 NM_006261 5626 Hs.158301 NM_006261 ENSG00000175325 PROP1 CPHD2|PROP-1 PROP paired-like homeobox 1 protein-coding 0.994 1.478 0.948 0.150 0.359 0.198 0.737 0.070 0.097 0.216 0.193 1.776 2.372 0.141 0.139 0.543 0.950 0.638 nan 1.320 1.234 1.164 0.336 0.536 0.534 1.456 nan 1.756 1.575 0.393 0.253 0.428 0.607 0.446 0.349 0.183 0.335 0.656 0.416 2.664 4.297 0.119 0.075 0.737 1.776 0.405 0.177 0.173 0.079 106 chr1 87858159 87867696 + 0 NA Intergenic Intergenic -25589 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 1.517 nan nan 3.199 5.407 2.708 0.364 0.119 0.033 0.890 0.303 0.460 3.905 0.062 0.142 0.288 0.400 0.482 0.838 1.252 1.426 2.182 0.847 0.315 0.327 1.702 2.157 3.290 2.957 0.500 0.336 0.307 0.834 4.122 5.699 0.484 0.861 2.123 1.283 1.033 1.417 0.930 0.074 0.364 0.460 0.057 1.322 0.604 1020 chr2 24449343 24466822 + 0 NA intron (NM_006277, intron 29 of 39) L1MC1|LINE|L1 60170 NM_001040710 653140 Hs.741736 NM_001040710 ENSG00000186453 FAM228A C2orf84 family with sequence similarity 228 member A protein-coding 1.014 0.772 1.020 0.581 0.731 0.285 0.129 0.115 0.129 0.225 0.254 0.226 0.482 0.075 0.120 0.505 0.386 0.352 0.363 1.815 1.740 0.557 0.246 0.645 0.634 0.462 0.647 2.210 nan 0.522 0.174 0.257 0.363 0.335 0.218 0.442 0.880 4.123 1.564 0.043 0.208 0.055 0.086 0.129 0.226 0.067 0.087 0.109 0.207 1643 chr8 53294380 53321035 + 0 NA intron (NM_014682, intron 2 of 25) intron (NM_014682, intron 2 of 25) 14732 NM_014682 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18, C2H2C-type zinc finger protein-coding 1.237 nan 0.902 2.593 1.098 0.584 0.202 0.085 0.054 0.838 0.308 2.619 0.879 0.048 0.100 0.348 0.295 0.431 0.472 1.932 2.354 2.875 1.051 0.472 0.455 0.584 nan 1.635 1.132 0.459 0.284 0.224 0.331 0.345 0.415 0.217 0.344 3.137 1.681 0.022 0.354 0.035 0.036 0.202 2.619 0.095 1.540 0.092 0.079 702 chr16 31083301 31086975 + 0 NA promoter-TSS (NM_014699) promoter-TSS (NM_014699) -315 NM_001172668 79759 Hs.102928 NM_024706 ENSG00000167394 ZNF668 - zinc finger protein 668 protein-coding 9.051 4.012 6.546 8.275 6.044 3.315 4.963 3.531 0.393 2.544 0.914 7.765 19.456 5.238 0.102 5.978 7.515 8.489 11.920 9.946 8.618 16.280 5.215 11.476 11.815 6.210 8.559 14.832 16.880 8.843 10.036 3.628 7.848 9.868 10.963 4.232 5.892 5.509 2.608 4.922 3.854 1.767 3.096 4.963 7.765 2.808 6.134 2.858 1.918 1276 chr3 114979383 114992093 + 0 NA Intergenic Intergenic -119611 NM_015642 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 0.996 nan 0.661 0.132 0.512 0.152 1.526 0.152 0.090 0.273 0.214 0.113 0.421 0.051 0.104 0.376 0.244 0.213 0.258 0.352 nan 8.591 6.275 0.282 0.269 nan 0.947 0.255 0.252 0.631 0.269 0.106 0.098 0.099 0.188 0.404 0.825 0.772 0.731 0.113 0.161 0.022 0.056 1.526 0.113 0.023 0.810 0.023 0.187 561 chr13 112707052 112734824 + 0 NA promoter-TSS (NM_005986) promoter-TSS (NM_005986) -975 NM_005986 6656 Hs.202526 NM_005986 ENSG00000182968 SOX1 - SRY-box 1 protein-coding 0.519 nan 0.657 1.908 8.194 4.432 8.728 0.038 0.058 1.724 0.802 11.949 18.578 0.035 0.045 1.479 2.219 0.268 0.434 19.843 16.045 3.486 1.230 0.029 0.036 0.019 0.049 4.043 4.931 0.347 0.267 0.971 1.326 0.947 0.563 0.074 0.107 1.099 0.577 6.787 5.037 0.107 0.486 8.728 11.949 0.010 0.007 0.488 0.040 27 chr1 8619350 8633406 + 0 NA intron (NM_012102, intron 5 of 23) intron (NM_012102, intron 5 of 23) -71405 NR_132752 106632271 NR_132752 SNORD128 ZL43 small nucleolar RNA, C/D box 128 snoRNA 1.389 nan 1.426 0.583 0.449 0.195 0.291 0.482 0.069 0.323 0.301 0.187 0.587 0.510 0.169 0.403 0.401 0.424 1.073 0.987 1.291 1.929 0.757 0.870 0.844 1.664 nan nan 4.651 nan 0.966 0.390 0.560 0.095 0.215 2.776 6.545 1.264 0.846 0.096 0.189 0.027 0.273 0.291 0.187 0.103 0.145 0.056 1.355 666 chr15 78498313 78509238 + 0 NA intron (NM_015162, intron 1 of 13) intron (NM_015162, intron 1 of 13) 23274 NM_001199377 23205 Hs.655760 NM_015162 ENSG00000103740 ACSBG1 BG|BG1|BGM|GR-LACS|LPD acyl-CoA synthetase bubblegum family member 1 protein-coding 1.451 5.882 1.030 0.581 0.360 0.160 0.478 0.455 0.103 0.271 0.155 0.120 3.968 0.090 0.076 0.455 0.329 0.435 0.586 0.380 0.322 4.006 1.300 0.239 0.246 0.434 0.716 0.620 0.651 0.885 0.748 0.341 0.431 1.227 1.600 0.393 0.375 0.514 0.407 0.014 0.252 0.236 0.332 0.478 0.120 0.341 0.399 0.018 0.211 918 chr19 5621622 5628777 + 0 NA intron (NM_002967, intron 1 of 20) intron (NM_002967, intron 1 of 20) 2153 NM_001320571 6294 Hs.728802 NM_002967 ENSG00000160633 SAFB HAP|HET|SAB-B1|SAF-B|SAF-B1|SAFB1 scaffold attachment factor B protein-coding 3.388 2.213 3.233 3.326 4.181 2.520 2.970 1.698 0.113 1.490 0.871 4.540 6.896 2.663 0.130 3.312 3.380 4.527 6.352 5.537 5.889 3.409 1.614 9.067 9.152 3.982 4.875 5.730 nan 9.686 8.283 1.863 4.048 2.954 4.637 4.101 4.525 2.988 1.666 2.905 2.264 0.825 1.884 2.970 4.540 1.379 1.979 0.946 1.325 977 chr19 48342395 48372481 + 0 NA Intergenic MER90a|LTR|ERV1 32216 NM_003167 6822 Hs.515835 NM_003167 ENSG00000105398 SULT2A1 DHEA-ST|DHEAS|HST|ST2|ST2A1|ST2A3|STD|hSTa sulfotransferase family 2A member 1 protein-coding 1.029 0.757 0.997 0.070 0.339 0.186 0.146 0.083 0.187 0.053 0.088 0.112 0.193 0.189 0.113 0.169 0.171 0.149 0.183 0.276 0.305 0.304 0.145 0.247 0.225 0.176 0.329 0.164 0.203 1.304 0.775 0.142 0.169 0.080 0.117 1.480 6.205 0.330 0.450 0.020 0.091 0.029 0.013 0.146 0.112 0.026 0.030 0.026 2.468 1163 chr20 45311395 45339851 + 0 NA Intergenic LTR16C|LTR|ERVL -7347 NM_033550 112858 Hs.440263 NM_033550 ENSG00000172315 TP53RK BUD32|C20orf64|Nori-2|Nori-2p|PRPK|dJ101A2 TP53 regulating kinase protein-coding nan nan 1.226 0.542 0.964 0.394 0.877 0.736 0.131 0.255 0.145 0.980 2.105 0.687 0.119 2.526 3.154 0.911 1.907 1.148 1.069 nan 1.538 1.012 1.140 0.759 1.073 1.697 2.814 nan 1.484 3.106 2.661 0.206 0.181 2.052 2.888 0.540 0.473 0.309 1.122 0.040 0.596 0.877 0.980 0.254 0.415 1.073 0.613 807 chr17 61914761 61928952 + 0 NA Intergenic Intergenic -1505 NM_001098426 6603 Hs.250581 NM_003077 ENSG00000108604 SMARCD2 BAF60B|CRACD2|PRO2451|Rsc6p SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 protein-coding 2.731 nan 4.520 2.300 4.620 2.265 0.777 0.811 0.224 1.945 0.974 2.871 3.571 1.482 0.123 3.995 5.369 1.302 2.034 3.110 3.016 3.238 1.130 8.435 9.047 1.324 nan 4.963 5.471 3.309 3.344 0.825 2.236 1.897 1.953 1.945 3.903 1.538 0.837 0.791 1.411 0.506 1.284 0.777 2.871 0.478 0.754 0.627 1.065 485 chr12 58144491 58150990 + 0 NA Intergenic Intergenic -1141 NM_138396 92979 Hs.632709 NM_138396 ENSG00000139266 MARCH9 MARCH-IX|RNF179 membrane associated ring-CH-type finger 9 protein-coding nan 2.775 2.417 4.162 4.713 2.418 4.244 2.069 0.197 2.723 1.129 5.244 7.372 1.238 0.069 nan 4.241 3.118 4.515 6.304 nan 6.404 2.896 5.259 5.880 3.602 nan 10.613 14.488 4.938 5.173 2.258 4.065 4.373 5.119 4.948 6.877 4.650 2.230 1.201 5.792 1.025 1.321 4.244 5.244 1.415 2.582 1.541 1.545 870 chr18 45215197 45230487 + 0 NA Intergenic Intergenic 234128 NM_005901 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding nan 0.868 1.070 0.087 0.296 0.180 0.635 0.069 0.053 0.052 0.076 0.110 0.319 0.021 0.093 0.382 0.189 0.148 0.240 0.535 0.525 0.824 0.279 0.116 0.156 0.083 0.185 0.187 0.170 0.318 0.144 0.156 0.091 0.127 0.239 0.755 nan 0.496 0.748 0.018 0.052 0.037 0.036 0.635 0.110 0.007 0.013 0.013 3.545 246 chr10 1280675 1287420 + 0 NA intron (NM_018702, intron 5 of 9) intron (NM_018702, intron 5 of 9) 78339 NR_015376 399706 Hs.721191 NM_001010910 ENSG00000229205 LINC00200 C10orf139|NCRNA00200 long intergenic non-protein coding RNA 200 ncRNA 0.550 0.367 0.965 1.474 1.396 0.596 1.915 0.186 0.118 0.398 0.290 6.843 2.450 0.420 0.109 0.444 0.680 0.151 0.227 1.547 2.150 3.005 1.251 2.493 3.409 0.183 0.252 2.289 2.062 0.162 0.088 0.331 0.264 0.124 0.082 0.150 0.225 0.298 0.228 0.212 1.099 0.029 0.095 1.915 6.843 1.322 4.920 0.278 0.055 65 chr1 40721977 40725633 + 0 NA promoter-TSS (NM_005857) promoter-TSS (NM_005857) 83 NM_005857 10269 Hs.132642 NM_005857 ENSG00000084073 ZMPSTE24 FACE-1|FACE1|HGPS|PRO1|STE24|Ste24p zinc metallopeptidase STE24 protein-coding 34.669 3.032 nan 20.708 3.962 1.563 89.235 3.915 0.528 2.575 1.350 6.634 6.818 5.034 0.194 5.497 4.911 6.387 9.409 9.573 9.779 6.499 2.609 12.867 14.153 4.948 nan nan 18.317 8.555 7.472 8.675 nan 2.778 3.059 6.444 6.769 8.109 4.158 2.537 1.851 0.396 22.209 89.235 6.634 1.364 1.332 3.276 1.932 1065 chr2 144152688 144162550 + 0 NA intron (NM_018460, intron 6 of 13) intron (NM_018460, intron 6 of 13) 270720 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 0.897 nan 1.029 0.107 0.326 0.224 0.378 0.712 0.148 0.126 0.101 0.572 1.140 0.033 0.081 0.238 0.158 0.405 0.775 0.570 0.741 0.757 0.185 0.339 0.315 5.428 5.226 0.729 0.956 1.448 1.097 0.105 0.221 0.050 0.036 0.359 0.748 0.414 0.349 0.384 0.044 0.048 0.410 0.378 0.572 0.184 0.124 0.148 0.080 1694 chr8 144357984 144374838 + 0 NA Intergenic AluY|SINE|Alu -2541 NR_120683 100507316 Hs.446671 NR_120682 ENSG00000253716 MINCR LINC01604 MYC-induced long noncoding RNA ncRNA 2.485 1.484 nan 1.578 1.399 0.725 1.536 0.590 0.143 0.438 0.216 1.916 5.168 1.138 0.079 2.426 2.291 1.905 2.891 nan 2.992 nan 0.825 2.339 2.380 1.215 1.914 1.234 1.405 1.467 1.484 1.804 2.767 1.254 1.418 1.402 1.972 1.617 0.990 1.271 2.099 0.188 0.340 1.536 1.916 0.516 3.810 0.648 0.592 56 chr1 35653504 35663986 + 0 NA promoter-TSS (NR_136703) promoter-TSS (NR_136703) 1 NR_136703 6421 Hs.355934 NM_005066 ENSG00000116560 SFPQ POMP100|PPP1R140|PSF splicing factor proline and glutamine rich protein-coding 4.018 nan 3.688 4.546 3.466 1.936 2.780 1.768 0.387 3.052 1.388 7.030 4.764 3.011 0.179 3.519 3.394 3.954 5.652 7.818 7.752 nan 2.121 7.657 7.802 2.980 3.795 10.219 14.214 nan 5.809 3.535 6.768 3.041 2.964 5.668 4.143 1.778 nan 2.681 2.852 0.457 1.945 2.780 7.030 0.916 1.316 0.913 1.143 1152 chr20 32234454 32249701 + 0 NA Intergenic Intergenic -8015 NM_080825 128864 Hs.324104 NM_080825 ENSG00000149609 C20orf144 dJ63M2.6 chromosome 20 open reading frame 144 protein-coding 1.460 3.338 5.258 3.173 5.312 2.711 0.252 1.034 0.254 1.008 0.441 6.877 4.803 0.121 0.075 3.572 5.017 0.968 0.695 4.990 nan 3.560 0.921 2.266 2.452 1.128 1.777 8.340 7.799 2.135 1.919 1.650 2.224 0.760 0.968 0.658 nan 1.084 0.615 1.841 2.375 0.144 0.632 0.252 6.877 0.165 0.453 0.498 0.369 915 chr19 3356113 3372554 + 0 NA intron (NM_205843, intron 1 of 10) MIR|SINE|MIR -2232 NM_005597 4782 Hs.170131 NM_005597 ENSG00000141905 NFIC CTF|CTF5|NF-I|NFI nuclear factor I C protein-coding 1.742 2.042 3.392 1.529 2.273 1.295 1.729 2.191 0.341 1.303 0.615 2.976 3.129 3.763 0.110 1.423 2.298 1.483 1.546 4.096 3.545 1.213 0.435 2.992 2.880 5.555 7.661 2.226 nan 5.557 5.753 0.952 1.525 1.694 1.434 0.655 0.964 1.446 0.912 1.793 1.569 0.603 0.180 1.729 2.976 0.751 1.831 0.766 0.420 509 chr12 119788606 119852048 + 0 NA intron (NM_178499, intron 1 of 13) L2b|LINE|L2 47810 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding nan nan 0.578 0.067 0.695 0.357 0.448 0.057 0.082 0.263 0.251 2.007 5.852 0.062 0.103 0.346 0.318 0.179 0.357 nan nan nan 0.807 0.094 0.106 1.166 1.428 nan nan 0.576 0.245 0.311 0.520 0.728 0.618 0.390 0.799 nan 1.273 1.563 1.491 0.170 0.261 0.448 2.007 0.075 0.206 0.213 0.193 1488 chr6 41485318 41556863 + 0 NA intron (NM_001012426, intron 1 of 16) intron (NM_001012426, intron 1 of 16) -4731 NR_126415 101060264 Hs.571099 NR_126415 ENSG00000234753 FOXP4-AS1 - FOXP4 antisense RNA 1 ncRNA 1.424 1.094 1.882 1.783 1.050 0.542 0.913 0.332 0.098 0.355 0.200 1.677 1.499 0.297 0.107 1.040 1.779 0.525 0.746 1.372 1.453 1.914 0.748 0.717 0.749 0.481 0.783 4.706 nan 0.864 0.795 1.083 1.984 1.562 1.545 0.581 1.499 1.731 0.934 0.493 0.598 0.552 0.252 0.913 1.677 0.292 0.752 1.129 0.508 1636 chr8 48421337 48453868 + 0 NA intron (NR_104581, intron 6 of 16) intron (NR_104581, intron 6 of 16) 213124 NM_005195 1052 Hs.440829 NM_005195 ENSG00000221869 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT/enhancer binding protein delta protein-coding 1.156 nan 0.722 0.327 0.318 0.232 0.177 1.419 0.134 0.179 0.141 0.302 0.683 0.982 0.116 0.527 0.360 3.291 5.564 0.532 0.602 0.459 0.144 0.618 0.669 0.418 0.772 0.467 0.436 0.344 0.160 0.228 0.473 0.437 0.554 0.308 0.644 0.883 0.734 0.055 0.091 0.099 0.095 0.177 0.302 0.018 0.667 0.097 0.170 1010 chr2 5825078 5839018 + 0 NA promoter-TSS (NR_110580) promoter-TSS (NR_110580) -751 NM_003108 6664 Hs.432638 NM_003108 ENSG00000176887 SOX11 MRD27 SRY-box 11 protein-coding 4.252 1.835 0.762 0.060 5.404 2.662 3.193 0.048 0.127 2.644 1.674 2.027 14.521 0.055 0.089 3.905 5.334 0.287 0.683 9.781 7.305 6.340 2.594 0.036 0.039 0.930 1.508 4.899 8.866 5.349 7.062 0.618 0.943 0.583 0.298 3.932 3.794 0.106 0.126 3.408 6.053 0.198 4.892 3.193 2.027 1.488 3.124 0.234 2.228 536 chr13 72084907 72102556 + 0 NA intron (NM_004392, intron 3 of 7) intron (NM_004392, intron 3 of 7) 347599 NM_080760 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding nan 1.110 0.973 0.046 0.738 0.452 0.333 0.071 0.070 0.116 0.150 0.264 0.292 0.043 0.091 0.647 0.654 0.211 0.329 1.193 1.348 nan 0.202 0.126 0.140 1.083 1.381 0.376 0.427 nan 6.192 0.193 0.394 1.222 2.471 1.367 nan 0.177 0.111 0.050 0.174 0.470 4.513 0.333 0.264 1.218 0.730 0.118 1.015 341 chr11 47484522 47496414 + 0 NA 3' UTR (NM_001172640, exon 13 of 13) 3' UTR (NM_001172640, exon 13 of 13) -19738 NM_032645 5913 Hs.81218 NM_005055 ENSG00000165917 RAPSN CMS11|CMS4C|FADS|RAPSYN|RNF205 receptor associated protein of the synapse protein-coding nan 2.464 2.440 3.497 1.908 1.084 1.000 0.233 0.108 2.336 1.077 4.835 4.447 0.101 0.129 0.893 1.886 0.519 0.739 9.340 10.019 4.595 1.531 0.495 0.542 1.117 1.747 1.326 2.261 1.476 1.425 0.307 0.506 4.650 5.125 0.411 nan 4.050 1.661 3.937 3.431 1.372 0.280 1.000 4.835 1.127 0.120 0.092 0.136 828 chr17 78092633 78104993 + 0 NA Intergenic Intergenic 22169 NM_014740 9775 Hs.389649 NM_014740 ENSG00000141543 EIF4A3 DDX48|MUK34|NMP265|NUK34|RCPS|eIF4AIII eukaryotic translation initiation factor 4A3 protein-coding 1.239 0.945 0.992 0.332 0.470 0.158 0.244 0.205 0.143 0.203 0.080 0.205 0.532 0.052 0.091 4.700 6.307 0.277 0.334 0.580 0.570 0.966 0.284 1.037 1.141 nan 0.411 0.608 0.798 0.809 0.580 0.372 0.562 0.165 0.160 0.781 1.940 nan 0.611 0.050 0.174 0.078 0.144 0.244 0.205 0.128 1.397 0.145 0.348 156 chr1 160323612 160346889 + 0 NA Intergenic Intergenic -1611 NM_005598 4807 Hs.30956 NM_005598 ENSG00000171786 NHLH1 HEN1|NSCL|NSCL1|bHLHa35 nescient helix-loop-helix 1 protein-coding 3.956 nan 8.914 0.106 0.528 0.173 0.655 0.171 0.091 0.108 0.156 0.405 0.380 0.168 0.098 1.706 3.984 0.620 0.717 1.565 nan 0.638 0.264 0.241 0.258 2.821 3.708 0.413 nan 6.234 7.185 0.916 1.348 2.149 1.929 4.557 12.770 0.683 0.497 0.601 0.410 0.682 3.977 0.655 0.405 1.422 0.039 0.542 4.137 1462 chr6 15384131 15415971 + 0 NA intron (NM_004973, intron 2 of 17) intron (NM_004973, intron 2 of 17) 150965 NM_001267040 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 1.397 nan 1.226 0.750 0.519 0.279 0.589 0.551 0.161 0.247 0.195 1.449 0.227 0.073 0.078 0.631 0.770 0.956 1.556 0.987 0.974 1.024 0.451 0.389 0.383 0.820 1.287 1.080 1.403 1.548 1.174 0.487 0.779 0.464 0.576 1.468 3.800 0.858 0.694 0.158 0.653 0.078 0.879 0.589 1.449 0.373 0.187 0.251 0.903 1099 chr2 207985563 208033501 + 0 NA intron (NM_001270943, intron 1 of 3) intron (NM_001270943, intron 1 of 3) -10671 NM_001270944 8609 Hs.59908 NM_003709 ENSG00000118263 KLF7 UKLF Kruppel like factor 7 protein-coding 2.251 nan 1.559 0.856 4.609 2.427 2.238 1.161 0.141 1.437 0.934 1.566 3.995 0.841 0.085 1.520 2.006 1.091 1.547 1.393 1.314 1.363 0.892 3.197 3.278 3.464 4.340 1.329 1.654 2.656 2.717 0.661 1.452 3.287 3.484 2.229 3.541 0.725 0.392 2.054 1.055 0.979 0.474 2.238 1.566 1.018 0.555 0.265 1.010 1568 chr7 27221434 27229721 + 0 NA promoter-TSS (NM_005523) promoter-TSS (NM_005523) 550 NR_002795 221883 Hs.587427 NR_002795 ENSG00000240990 HOXA11-AS HOXA-AS5|HOXA11-AS1|HOXA11AS|HOXA11S|NCRNA00076 HOXA11 antisense RNA ncRNA 12.518 1.416 1.483 0.405 0.579 0.368 0.400 0.576 0.174 1.175 0.760 0.623 1.273 0.932 0.139 1.648 2.168 2.785 nan 2.583 2.176 2.999 0.553 0.739 0.773 3.209 4.238 1.739 1.753 1.341 1.522 2.325 3.986 3.688 2.818 0.567 nan 2.458 1.470 1.525 0.685 1.214 0.361 0.400 0.623 0.918 0.137 1.157 0.761 547 chr13 98888661 98895727 + 0 NA intron (NM_005766, intron 2 of 26) intron (NM_005766, intron 2 of 26) 31416 NR_036129 100422881 NR_036129 ENSG00000263399 MIR3170 mir-3170 microRNA 3170 ncRNA 1.434 1.153 0.850 1.106 1.191 0.635 0.524 0.063 0.184 0.464 0.175 1.253 0.847 0.046 0.075 0.969 1.257 0.219 0.389 2.761 2.404 7.565 2.274 0.124 0.164 0.266 0.330 6.146 5.765 0.570 0.375 1.154 1.894 1.963 1.865 0.566 0.533 0.435 0.342 7.662 5.108 0.539 0.977 0.524 1.253 0.262 0.101 1.248 0.164 1791 chrX 128263142 128281309 + 0 NA Intergenic AluSz|SINE|Alu 385257 NM_003069 6594 Hs.152292 NM_003069 ENSG00000102038 SMARCA1 ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2|hSNF2L SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 protein-coding 1.040 nan 1.240 0.179 3.344 1.728 0.211 0.035 0.026 0.707 0.487 0.217 0.174 0.018 0.037 0.184 0.133 0.273 0.312 0.129 0.210 0.765 0.259 0.109 0.122 0.191 0.338 0.299 0.514 0.560 0.344 0.065 0.103 1.819 1.667 0.653 1.633 1.146 0.637 0.003 0.040 0.728 0.562 0.211 0.217 0.054 0.156 0.005 1.056 1200 chr21 36232564 36265482 + 0 NA intron (NM_001001890, intron 2 of 5) intron (NM_001001890, intron 2 of 5) 11964 NM_001001890 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha runt related transcription factor 1 protein-coding 1.464 0.891 1.765 0.609 0.945 0.492 1.201 1.126 0.171 0.186 0.136 1.723 2.741 0.132 0.077 1.261 1.497 3.691 6.769 4.829 4.035 1.165 0.401 4.191 4.222 0.141 0.275 1.787 2.588 0.799 0.762 1.211 1.407 0.307 0.292 0.261 0.288 nan 0.503 2.241 2.740 0.020 0.248 1.201 1.723 0.222 0.416 0.329 0.072 318 chr11 19259776 19267219 + 0 NA promoter-TSS (NM_024680) promoter-TSS (NM_024680) -295 NM_001256372 79733 Hs.523526 NM_024680 ENSG00000129173 E2F8 E2F-8 E2F transcription factor 8 protein-coding 1.494 nan 1.561 2.439 1.130 0.689 1.117 1.291 0.107 0.451 0.266 1.388 10.086 1.238 0.076 nan 2.858 2.839 4.070 1.488 1.412 2.153 1.308 5.305 5.091 1.145 nan 2.004 2.552 1.585 1.253 0.986 1.609 1.598 2.157 0.892 0.795 0.889 nan 0.853 1.272 0.396 0.927 1.117 1.388 0.145 0.574 0.319 0.166 1241 chr22 46493274 46506240 + 0 NA intron (NR_027033, intron 4 of 5) intron (NR_027033, intron 4 of 5) -8872 NR_029478 406883 NR_029478 ENSG00000197182 MIRLET7A3 LET7A3|MIRNLET7A3|let-7a-3 microRNA let-7a-3 ncRNA 1.511 3.107 nan 1.182 2.968 1.357 0.793 0.606 0.111 1.322 0.682 0.890 1.737 0.475 0.085 2.258 3.463 0.715 1.929 7.157 6.605 0.637 0.196 0.849 0.722 1.023 1.623 1.026 1.344 1.574 1.238 0.550 0.765 1.286 1.281 0.114 0.148 2.570 1.390 1.090 0.314 0.440 0.911 0.793 0.890 0.506 1.559 0.244 0.019 366 chr11 65812808 65821107 + 0 NA promoter-TSS (NM_033036) promoter-TSS (NM_033036) -306 NM_033036 89792 Hs.208343 NM_033036 ENSG00000175229 GAL3ST3 GAL3ST-3|GAL3ST2 galactose-3-O-sulfotransferase 3 protein-coding nan 2.356 2.163 2.883 3.743 1.624 2.488 0.938 0.324 0.937 0.575 3.412 4.147 1.646 0.121 4.870 4.135 2.810 3.533 8.278 8.192 4.440 1.896 3.656 3.885 2.538 3.521 4.349 5.223 3.749 3.392 2.730 3.956 1.540 2.197 2.202 3.469 1.929 0.951 5.091 3.259 0.253 1.648 2.488 3.412 0.913 1.469 2.313 1.030 931 chr19 13259382 13285339 + 0 NA Intergenic AluSg|SINE|Alu 11078 NM_004907 9592 Hs.501629 NM_004907 ENSG00000160888 IER2 ETR101 immediate early response 2 protein-coding 6.035 3.856 4.048 2.412 4.521 2.166 2.279 3.265 0.828 1.583 0.776 3.676 2.531 4.264 0.146 4.105 4.536 2.999 5.759 2.988 2.585 7.209 3.637 4.532 4.796 2.190 2.752 6.224 7.128 4.887 4.668 1.654 3.308 5.255 4.525 3.992 7.110 2.765 1.669 5.147 1.892 1.171 1.621 2.279 3.676 1.165 2.627 2.049 2.216 487 chr12 58221153 58247586 + 0 NA intron (NM_005730, intron 1 of 7) intron (NM_005730, intron 1 of 7) 6378 NM_005730 10106 Hs.524530 NM_005730 ENSG00000175215 CTDSP2 OS4|PSR2|SCP2 CTD small phosphatase 2 protein-coding nan 1.572 1.691 1.810 1.194 0.627 1.010 1.186 0.214 1.287 0.595 2.543 2.479 1.399 0.077 nan 2.623 1.417 2.005 2.827 nan 2.429 0.773 2.999 2.969 1.211 nan 3.276 nan 1.848 1.676 1.160 1.769 0.627 0.707 1.438 2.058 2.495 1.225 0.904 2.641 0.155 0.818 1.010 2.543 0.416 0.611 0.857 0.820 1426 chr5 139485661 139496222 + 0 NA Intergenic Intergenic -2767 NM_005859 5813 Hs.443121 NM_005859 ENSG00000185129 PURA MRD31|PUR-ALPHA|PUR1|PURALPHA purine rich element binding protein A protein-coding 2.851 2.799 nan 1.778 2.105 1.317 1.319 0.855 0.168 1.298 0.393 3.106 4.953 2.817 0.164 3.994 4.764 3.578 4.256 4.168 3.909 2.471 0.954 5.681 5.801 1.671 2.354 3.035 4.237 4.079 4.328 4.906 9.806 1.286 1.016 3.139 4.185 1.416 0.629 0.731 2.420 0.135 1.389 1.319 3.106 0.740 3.003 3.701 1.181 774 chr17 37754916 37794597 + 0 NA Intergenic Intergenic -8421 NM_032192 84152 Hs.286192 NM_032192 ENSG00000131771 PPP1R1B DARPP-32|DARPP32 protein phosphatase 1 regulatory inhibitor subunit 1B protein-coding nan 1.047 1.755 0.520 2.145 1.114 0.752 0.415 0.126 0.647 0.423 1.016 1.765 0.377 0.073 3.722 5.985 0.698 0.975 nan 2.400 1.633 0.610 2.507 2.650 1.032 1.559 2.594 3.392 nan 3.258 1.034 1.528 0.920 0.789 0.676 0.972 1.370 0.755 0.572 0.933 0.270 0.378 0.752 1.016 1.185 0.580 0.934 0.251 846 chr18 3491058 3528263 + 0 NA intron (NM_001003809, intron 7 of 9) intron (NM_001003809, intron 7 of 9) 43412 NR_110428 100505592 Hs.635114 NR_110428 ENSG00000266835 GAPLINC LINC01540 gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA ncRNA 1.380 1.837 1.271 0.380 0.508 0.304 0.145 0.162 0.086 0.357 0.268 1.776 nan 2.074 0.185 1.112 0.724 1.703 2.148 2.103 2.062 nan 0.138 0.479 0.488 0.533 nan 1.734 2.407 nan 0.468 0.587 0.949 0.695 1.014 0.384 nan nan 1.287 3.392 0.359 0.146 0.897 0.145 1.776 0.164 0.684 0.641 0.202 1157 chr20 35916369 35926225 + 0 NA intron (NM_001003897, intron 1 of 2) L1MC3|LINE|L1 3246 NM_022077 63905 Hs.6126 NM_022077 ENSG00000101363 MANBAL - mannosidase beta like protein-coding 2.729 4.073 2.144 4.186 2.100 1.021 2.471 1.130 0.395 1.154 0.656 3.377 4.720 1.510 0.132 3.226 3.161 1.511 2.959 3.474 nan 7.956 2.720 3.953 4.290 2.209 3.242 4.972 6.608 3.058 3.155 1.572 2.196 1.892 2.315 2.264 nan 1.995 1.142 0.959 1.562 0.217 0.917 2.471 3.377 0.786 1.172 0.583 0.703 1710 chr9 2282645 2304488 + 0 NA Intergenic Intergenic 135110 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 1.109 3.917 2.897 2.800 1.670 0.756 1.996 0.122 0.066 2.900 1.052 5.406 8.131 0.039 0.089 0.194 0.128 0.440 0.821 4.537 4.841 8.542 4.350 0.608 0.589 1.002 1.644 6.108 6.824 0.654 0.533 0.197 0.236 3.693 2.937 0.235 nan 6.041 3.619 2.563 2.656 0.579 0.516 1.996 5.406 0.620 0.912 0.149 0.046 1695 chr8 145012264 145032883 + 0 NA intron (NM_000445, intron 2 of 32) intron (NM_000445, intron 2 of 32) 2471 NM_201380 5339 Hs.434248 NM_000445 ENSG00000178209 PLEC EBS1|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|PCN|PLEC1|PLEC1b|PLTN plectin protein-coding 3.581 1.602 nan 2.287 1.468 0.723 2.656 1.750 0.460 0.314 0.152 1.598 4.980 1.019 0.058 1.917 3.378 1.288 2.290 nan 2.984 nan 0.868 2.555 2.788 0.750 1.380 2.630 4.245 0.988 1.120 1.282 1.867 1.022 0.921 1.539 2.121 1.025 0.630 1.739 1.452 0.227 0.566 2.656 1.598 0.524 1.521 0.977 0.382 1261 chr3 69118907 69144304 + 0 NA Intergenic FLAM_A|SINE|Alu -2081 NM_198195 9039 Hs.154320 NM_003968 ENSG00000144744 UBA3 NAE2|UBE1C|hUBA3 ubiquitin like modifier activating enzyme 3 protein-coding 1.351 nan 1.890 0.751 0.436 0.194 0.349 0.776 0.107 0.252 0.149 0.574 1.721 0.465 0.080 0.595 0.761 1.014 1.535 1.013 1.047 1.043 0.388 0.532 0.527 0.883 1.245 0.737 1.009 1.176 0.929 0.549 1.043 0.309 0.334 2.012 nan 0.722 0.417 0.219 0.343 0.063 0.350 0.349 0.574 0.191 0.487 0.347 0.977 3 chr1 1108157 1115650 + 0 NA intron (NM_001130045, intron 3 of 15) intron (NM_001130045, intron 3 of 15) 2617 NM_001130045 254173 Hs.454835 NM_153254 ENSG00000162571 TTLL10 TTLL5 tubulin tyrosine ligase like 10 protein-coding 0.735 nan 1.255 2.888 1.716 0.884 0.257 0.101 0.106 0.769 0.443 2.409 2.126 0.100 0.086 0.708 1.341 0.209 0.408 13.153 10.356 0.876 0.248 1.780 1.746 0.135 nan nan 17.265 nan 0.130 0.458 0.519 0.077 0.101 0.123 0.167 1.269 0.863 7.545 4.121 0.013 1.058 0.257 2.409 0.390 0.105 0.016 1353 chr4 153197524 153210779 + 0 NA Intergenic L1ME4a|LINE|L1 -54656 NR_104273 102191832 Hs.712524 NR_104273 ENSG00000270751 FBXW7-AS1 DEAR|DEspR FBXW7 antisense RNA 1 pseudo nan 2.376 0.533 1.114 0.753 0.232 0.301 0.118 0.037 0.498 0.224 1.830 0.774 0.033 0.095 1.141 1.651 7.119 5.214 0.958 0.917 1.166 0.582 1.427 1.626 0.119 0.180 1.236 1.528 0.253 0.185 0.437 1.024 0.145 0.103 0.179 0.215 0.969 0.623 0.050 0.053 0.015 0.098 0.301 1.830 0.092 0.366 0.028 1245 chr3 14987498 14992430 + 0 NA promoter-TSS (NR_046255) promoter-TSS (NR_046255) -16 NR_046251 100505641 Hs.517821 NR_046251 ENSG00000225733 FGD5-AS1 - FGD5 antisense RNA 1 ncRNA nan 4.312 4.412 4.388 3.848 2.045 3.186 3.370 0.588 1.812 1.065 4.296 9.696 4.062 0.120 5.780 4.374 8.002 10.311 8.728 8.495 6.143 3.842 15.125 15.749 2.963 3.380 9.381 14.631 8.697 8.232 6.670 7.610 4.366 5.455 5.176 4.322 2.763 1.195 4.470 3.898 1.388 3.172 3.186 4.296 0.850 3.333 2.292 2.035 24 chr1 7700223 7717740 + 0 NA intron (NM_015215, intron 7 of 22) intron (NM_015215, intron 7 of 22) -122348 NM_004781 9341 Hs.66708 NM_004781 ENSG00000049245 VAMP3 CEB vesicle associated membrane protein 3 protein-coding 1.042 nan 0.832 1.452 0.548 0.366 0.529 0.077 0.119 0.455 0.175 0.574 2.032 0.068 0.082 0.287 0.254 0.171 0.265 1.956 2.067 2.012 0.885 0.183 0.246 0.383 nan nan 6.095 nan 0.681 0.438 0.392 0.244 0.264 0.430 0.850 1.157 0.714 3.410 0.877 0.093 0.073 0.529 0.574 0.232 0.780 0.040 0.162 483 chr12 57844315 57856796 + 0 NA exon (NM_031479, exon 2 of 2) exon (NM_031479, exon 2 of 2) 1481 NM_031479 83729 Hs.632713 NM_031479 ENSG00000139269 INHBE - inhibin beta E subunit protein-coding nan 1.839 2.412 1.959 1.499 0.912 1.520 1.236 0.130 1.546 0.264 0.580 1.559 2.547 0.130 nan 1.972 0.899 1.335 1.274 nan 3.319 1.128 6.259 6.814 0.950 nan 5.402 nan 3.930 5.003 2.115 2.025 2.646 4.421 2.947 9.114 1.746 0.998 1.521 2.583 0.434 1.865 1.520 0.580 1.045 0.934 0.905 2.564 1168 chr20 49339638 49367912 + 0 NA intron (NM_032521, intron 1 of 2) intron (NM_032521, intron 1 of 2) 5694 NM_032521 84612 Hs.589848 NM_032521 ENSG00000124171 PARD6B PAR6B par-6 family cell polarity regulator beta protein-coding nan nan 1.372 0.938 0.690 0.432 0.745 0.363 0.227 0.288 0.216 0.583 1.528 0.698 0.141 2.324 3.027 1.352 2.412 1.144 1.122 nan 0.469 1.388 1.365 0.814 1.316 1.831 2.409 nan 1.489 1.434 3.011 0.274 0.250 1.686 4.809 0.908 0.649 0.469 0.663 0.068 0.528 0.745 0.583 0.177 0.330 1.677 1.581 33 chr1 10993769 11051174 + 0 NA intron (NM_001170754, intron 5 of 12) AluSz|SINE|Alu 19623 NM_001170754 148345 Hs.127026 NM_173507 ENSG00000175262 C1orf127 - chromosome 1 open reading frame 127 protein-coding 1.175 1.073 nan 5.525 0.616 0.301 0.514 0.213 0.188 0.478 0.256 0.894 2.480 0.102 0.091 0.507 0.712 0.374 0.558 2.796 3.205 1.626 0.442 1.601 nan 0.310 nan 10.181 9.022 nan 0.498 0.539 0.605 0.499 0.437 0.500 1.298 1.890 0.917 1.022 1.228 0.147 0.039 0.514 0.894 0.139 0.743 0.222 0.179 1279 chr3 125036529 125045329 + 0 NA intron (NM_021964, intron 3 of 8) AluY|SINE|Alu 53269 NM_021964 7707 Hs.592591 NM_021964 ENSG00000163848 ZNF148 BERF-1|BFCOL1|HT-BETA|ZBP-89|ZFP148|pHZ-52 zinc finger protein 148 protein-coding 1.125 nan 1.107 0.189 0.392 0.200 0.189 0.901 0.293 0.231 0.314 0.287 0.272 0.024 0.093 0.401 0.375 0.398 0.826 0.650 0.850 0.616 0.322 0.401 0.361 4.971 nan 0.287 0.370 1.386 0.929 0.215 0.378 0.163 0.182 0.648 1.473 0.356 0.340 0.442 0.141 0.054 0.640 0.189 0.287 0.034 0.023 0.079 0.180 1081 chr2 176044362 176047566 + 0 NA intron (NM_001002258, intron 1 of 3) intron (NM_001002258, intron 1 of 3) 427 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5G3 P3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9) protein-coding 3.727 3.070 2.761 2.469 3.539 2.593 2.757 1.416 0.527 1.817 1.292 3.851 9.282 1.767 0.039 3.247 3.953 7.716 10.168 4.891 4.337 5.044 1.899 8.544 9.788 3.210 4.004 14.418 21.937 5.548 5.618 3.162 6.036 2.306 2.255 4.965 6.875 2.834 1.078 1.628 2.375 0.355 1.636 2.757 3.851 1.197 1.652 2.191 2.980 99 chr1 71871474 71884253 + 0 NA intron (NM_173808, intron 6 of 6) L2c|LINE|L2 330856 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA nan 0.776 0.873 0.411 0.469 0.188 0.118 0.113 0.176 0.294 0.193 0.299 0.344 0.060 0.110 0.523 0.321 0.226 0.206 0.551 nan 6.277 2.509 1.122 1.105 0.618 nan 0.993 0.927 0.422 0.155 0.186 0.263 0.184 0.214 0.350 0.623 0.679 0.452 0.088 0.105 0.052 0.006 0.118 0.299 0.016 0.031 0.058 1222 chr22 29212455 29225478 + 0 NA Intergenic Intergenic -22406 NM_005080 7494 Hs.437638 NM_005080 ENSG00000100219 XBP1 TREB-5|TREB5|XBP-1|XBP2 X-box binding protein 1 protein-coding nan 1.753 1.419 0.966 5.582 2.826 0.394 0.177 0.161 0.653 0.267 2.718 1.158 0.100 0.092 0.563 0.697 0.542 nan 1.433 1.263 4.114 1.248 1.808 1.993 0.556 nan 5.544 5.407 0.669 0.350 0.325 0.644 1.522 1.969 0.332 nan 4.231 1.752 1.618 0.498 0.445 0.891 0.394 2.718 0.082 1.894 0.182 0.152 1071 chr2 157187145 157209168 + 0 NA Intergenic CpG -8869 NM_006186 4929 Hs.563344 NM_006186 ENSG00000153234 NR4A2 HZF-3|NOT|NURR1|RNR1|TINUR nuclear receptor subfamily 4 group A member 2 protein-coding nan 2.582 nan 2.916 4.081 2.334 2.250 1.776 0.240 1.559 0.849 2.251 9.236 1.390 0.100 2.087 2.785 4.403 5.342 2.441 1.904 3.002 1.396 5.565 6.125 3.840 3.970 2.836 3.829 1.177 1.191 0.704 1.352 3.096 2.468 2.558 4.538 0.912 0.720 2.083 1.227 0.525 1.264 2.250 2.251 0.711 2.164 0.473 1.845 12 chr1 3563865 3649254 + 0 NA promoter-TSS (NM_001126241) promoter-TSS (NM_001126241) -677 NM_001126242 7161 Hs.192132 NM_005427 ENSG00000078900 TP73 P73 tumor protein p73 protein-coding 1.247 nan 2.918 1.406 1.257 0.687 0.418 0.145 0.102 0.602 0.397 0.654 5.807 0.271 0.095 0.367 0.429 0.477 0.708 7.024 6.555 1.002 0.364 0.439 0.526 0.913 nan nan 2.549 nan 1.425 0.928 1.518 0.640 0.665 0.251 0.312 1.613 0.830 4.274 1.786 0.210 0.149 0.418 0.654 0.653 0.964 1.109 0.103 678 chr16 1115746 1141657 + 0 NA promoter-TSS (NR_027242) promoter-TSS (NR_027242) 30 NR_027242 146336 Hs.250557 NM_182510 ENSG00000261713 SSTR5-AS1 - SSTR5 antisense RNA 1 ncRNA 0.604 nan 1.055 0.079 0.408 0.135 0.149 0.063 0.062 0.080 0.060 1.485 0.874 0.063 0.065 0.192 0.157 0.081 0.098 0.379 0.265 nan 0.114 0.141 0.134 0.095 nan 0.134 0.104 0.367 0.196 0.116 0.095 0.547 0.471 0.060 0.106 1.424 0.615 2.349 0.103 0.077 0.015 0.149 1.485 0.098 1.441 0.023 0.024 1637 chr8 48647201 48652009 + 0 NA 3' UTR (NM_005195, exon 1 of 1) 3' UTR (NM_005195, exon 1 of 1) 1121 NM_005195 1052 Hs.440829 NM_005195 ENSG00000221869 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT/enhancer binding protein delta protein-coding 5.334 5.210 3.713 8.426 5.622 3.170 3.316 4.537 0.369 2.832 1.203 10.287 10.357 5.421 0.142 0.821 0.767 7.185 12.113 15.777 13.222 5.311 1.641 7.336 7.019 1.698 2.542 7.860 15.187 1.845 1.971 0.712 1.438 7.166 4.267 0.978 1.042 3.616 2.239 6.040 3.548 1.662 5.672 3.316 10.287 0.139 6.625 0.269 0.460 622 chr14 100695117 100714264 + 0 NA promoter-TSS (NM_003403) promoter-TSS (NM_003403) -412 NM_003403 7528 Hs.388927 NM_003403 ENSG00000100811 YY1 DELTA|INO80S|NF-E1|UCRBP|YIN-YANG-1 YY1 transcription factor protein-coding 3.662 1.736 2.010 2.465 2.011 1.184 2.084 1.575 0.317 1.252 0.568 2.287 3.279 1.671 0.135 1.757 2.035 2.495 3.546 4.247 4.246 1.783 0.966 2.825 2.923 1.627 2.307 2.536 3.954 3.908 4.121 2.653 4.494 1.885 2.375 1.964 1.926 1.100 0.707 1.944 2.060 0.558 1.788 2.084 2.287 0.325 0.628 2.486 0.575 1036 chr2 48420961 48444303 + 0 NA Intergenic Intergenic -109163 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 1.426 nan 1.596 0.150 0.342 0.124 0.231 0.137 0.041 0.155 0.189 0.148 0.400 0.042 0.129 0.850 1.498 0.947 0.721 nan 0.679 2.009 0.608 0.381 0.474 1.611 1.783 0.339 0.445 2.085 1.774 0.217 0.281 0.458 0.415 1.508 nan nan 0.558 0.045 0.118 0.113 0.140 0.231 0.148 0.494 0.018 0.051 1.080 804 chr17 58467400 58471379 + 0 NA 5' UTR (NM_032582, exon 1 of 34) 5' UTR (NM_032582, exon 1 of 34) 197 NM_032582 84669 Hs.132868 NM_032582 ENSG00000170832 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 7.503 5.097 5.311 10.012 6.366 3.598 4.401 10.899 0.885 3.854 1.694 5.862 13.286 7.373 0.181 8.696 10.005 5.881 8.949 8.905 7.101 9.425 3.974 nan 11.849 5.772 6.528 11.858 20.324 11.420 11.899 4.354 8.883 6.931 7.672 6.800 10.114 3.328 1.848 2.203 6.436 1.893 3.455 4.401 5.862 1.860 4.564 6.898 3.985 1618 chr7 139757839 139764238 + 0 NA intron (NM_022750, intron 1 of 11) MLT1J1|LTR|ERVL-MaLR 2483 NR_130117 64761 Hs.12646 NM_022750 ENSG00000059378 PARP12 ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1 poly(ADP-ribose) polymerase family member 12 protein-coding nan nan nan 1.374 1.520 0.626 1.378 2.099 0.299 1.531 0.745 7.062 4.915 1.652 0.100 1.345 1.239 2.960 5.008 3.189 3.100 nan 1.091 5.614 5.721 0.171 nan 2.012 3.993 nan 1.181 2.598 2.832 1.149 1.302 0.476 0.444 3.038 nan 3.579 2.431 0.134 0.494 1.378 7.062 0.137 0.398 0.496 0.097 665 chr15 76782507 76813957 + 0 NA intron (NM_001145923, intron 23 of 31) L1MA3|LINE|L1 -80756 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 1.160 1.040 1.392 0.173 0.348 0.179 0.193 0.159 0.128 0.144 0.183 0.110 0.318 0.042 0.073 0.393 0.295 0.233 0.282 0.356 0.372 0.826 0.159 0.148 0.150 0.575 0.851 0.189 0.236 2.705 1.777 0.162 0.257 0.870 1.095 2.112 5.840 0.812 0.497 0.043 0.062 0.364 0.613 0.193 0.110 0.193 0.023 0.057 2.062 984 chr19 49464150 49470132 + 0 NA Intergenic Intergenic -1425 NM_000146 2512 Hs.433670 NM_000146 ENSG00000087086 FTL LFTD|NBIA3 ferritin light chain protein-coding 3.635 1.825 2.318 3.549 4.284 1.694 2.281 1.736 0.187 0.649 0.580 2.259 3.767 3.475 0.093 3.674 4.237 1.809 3.466 5.020 4.390 6.152 1.881 16.504 17.805 2.396 3.119 5.077 7.830 4.645 6.161 2.014 2.451 3.230 4.876 2.908 5.191 3.854 2.164 2.791 3.631 0.524 1.572 2.281 2.259 1.724 5.406 1.280 2.053 761 chr17 30500376 30527723 + 0 NA intron (NR_110083, intron 8 of 20) AluSz6|SINE|Alu -35459 NR_002222 503640 Hs.631752 NR_002222 ARGFXP2 - arginine-fifty homeobox pseudogene 2 pseudo nan 1.201 1.012 0.144 0.381 0.153 0.079 0.202 0.156 0.091 0.081 0.065 0.358 0.166 0.249 0.355 0.354 0.222 0.315 nan 0.445 0.434 0.196 0.386 0.364 0.358 0.605 0.444 0.500 nan 0.993 0.169 0.221 0.159 0.214 1.825 6.048 0.500 0.310 0.106 0.139 0.038 0.181 0.079 0.065 0.043 0.041 0.058 2.526 471 chr12 53684354 53695063 + 0 NA exon (NM_002624, exon 2 of 6) exon (NM_002624, exon 2 of 6) 473 NM_145897 5204 Hs.655327 NM_002624 ENSG00000123349 PFDN5 MM-1|MM1|PFD5 prefoldin subunit 5 protein-coding nan 1.769 1.164 2.656 1.703 1.150 1.264 0.613 0.119 2.239 1.204 2.963 4.154 1.331 0.122 nan 3.218 1.605 2.832 4.112 nan 4.910 1.501 2.370 2.857 1.630 nan 5.289 nan 1.758 1.402 1.387 1.913 1.512 1.782 1.725 2.152 4.466 2.405 1.733 2.867 0.259 0.443 1.264 2.963 0.498 1.409 0.424 0.404 683 chr16 3142335 3163974 + 0 NA Intergenic AluJo|SINE|Alu -3836 NM_001282415 84891 Hs.334515 NM_032805 ENSG00000130182 ZSCAN10 ZNF206 zinc finger and SCAN domain containing 10 protein-coding 1.170 nan 1.346 1.720 1.102 0.590 0.798 0.310 0.171 0.455 0.303 0.658 2.164 0.594 0.064 0.747 0.859 0.506 0.776 1.163 1.145 nan 1.379 0.906 0.921 0.780 nan 1.030 1.489 1.168 0.962 0.687 0.794 1.187 1.096 0.835 1.274 1.435 0.973 0.394 1.090 0.185 0.274 0.798 0.658 0.260 0.586 0.347 0.246 517 chr12 125065074 125075262 + 0 NA Intergenic L1ME3A|LINE|L1 -18158 NM_001206654 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 1.027 1.324 1.086 0.353 2.040 0.851 0.551 0.168 0.095 0.661 0.471 7.928 1.672 0.042 0.072 0.425 0.380 0.253 0.290 2.981 3.910 nan 0.840 0.585 0.673 0.969 1.307 4.089 4.829 0.628 0.325 0.225 0.377 0.497 0.511 0.365 0.802 1.764 0.983 1.048 3.948 0.102 0.141 0.551 7.928 0.270 0.325 0.030 0.206 572 chr14 23820866 23836952 + 0 NA exon (NM_005864, exon 4 of 6) exon (NM_005864, exon 4 of 6) 5933 NM_005864 10278 Hs.24587 NM_005864 ENSG00000100842 EFS CAS3|CASS3|EFS1|EFS2|HEFS|SIN embryonal Fyn-associated substrate protein-coding nan 3.534 4.334 0.270 1.430 0.729 2.390 0.137 0.120 0.043 0.148 0.059 0.748 0.282 0.092 0.158 0.199 2.952 3.914 4.202 3.680 0.579 0.162 0.216 0.251 1.994 2.714 0.174 nan 4.438 4.629 0.573 0.701 0.162 0.188 6.117 8.270 0.445 0.398 4.134 0.049 0.030 3.041 2.390 0.059 0.470 0.061 0.215 5.647 527 chr13 27578404 27592224 + 0 NA Intergenic Intergenic -114356 NR_046547 100874070 Hs.524923 NR_046547 USP12-AS1 - USP12 antisense RNA 1 ncRNA 1.017 0.886 1.401 0.814 0.205 0.147 0.381 0.109 0.128 0.149 0.209 1.387 1.061 0.039 0.062 1.540 2.910 0.235 nan 3.322 2.653 2.767 0.731 0.191 0.187 0.970 1.331 2.599 3.061 5.211 6.069 0.627 1.105 0.194 0.099 0.401 0.663 1.050 0.653 0.486 0.845 0.034 0.249 0.381 1.387 0.302 0.919 0.523 0.204 537 chr13 72175844 72199581 + 0 NA intron (NM_080759, intron 4 of 11) L2b|LINE|L2 253618 NM_080760 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding nan 1.230 0.863 0.171 2.508 1.047 1.924 0.057 0.068 0.487 0.271 0.704 0.613 0.018 0.064 0.712 0.645 0.203 0.391 1.591 1.819 nan 1.213 0.144 0.155 1.116 1.082 0.414 0.453 nan 2.155 0.271 0.501 1.280 2.433 0.890 nan 0.252 0.187 0.108 0.438 0.393 1.708 1.924 0.704 0.390 0.051 0.144 0.444 1441 chr5 174142160 174179854 + 0 NA Intergenic AT_rich|Low_complexity|Low_complexity 9432 NM_002449 4488 Hs.89404 NM_002449 ENSG00000120149 MSX2 CRS2|FPP|HOX8|MSH|PFM|PFM1 msh homeobox 2 protein-coding 0.573 0.474 0.521 0.040 0.246 0.123 0.495 0.065 0.060 0.021 0.042 0.041 1.510 0.081 0.100 0.146 0.067 3.942 nan 0.671 0.707 0.060 0.037 0.046 0.040 0.165 nan 0.333 0.480 0.243 0.087 0.167 0.299 1.138 1.390 0.151 0.292 0.083 0.143 0.028 0.185 0.270 0.010 0.495 0.041 0.005 0.030 0.034 0.066 877 chr18 47415093 47439514 + 0 NA intron (NM_001080467, intron 21 of 39) MIRb|SINE|MIR 86910 NR_003003 677769 NR_003003 ENSG00000267322 SCARNA17 U91 small Cajal body-specific RNA 17 ncRNA nan 1.192 1.067 1.032 0.277 0.164 0.688 0.042 0.059 0.475 0.249 0.164 1.489 0.031 0.099 0.501 0.553 0.199 0.318 0.696 0.886 1.126 0.288 0.190 0.185 0.257 0.384 0.751 0.878 0.375 0.193 0.236 0.287 1.899 2.760 0.186 nan 3.825 2.216 2.480 0.345 0.487 0.417 0.688 0.164 0.113 0.095 0.032 0.040 443 chr12 11800587 11808094 + 0 NA intron (NM_001987, intron 1 of 7) intron (NM_001987, intron 1 of 7) 1552 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 4.044 3.244 5.084 12.486 5.219 2.778 2.607 1.565 0.136 4.473 2.268 8.557 13.722 3.685 0.188 4.397 5.555 7.358 10.056 nan 10.919 10.709 4.964 13.143 13.270 2.757 3.694 11.106 19.496 4.892 5.320 3.800 6.381 2.521 2.072 2.862 2.588 2.739 1.653 4.819 4.074 0.517 0.869 2.607 8.557 0.311 2.025 3.275 1.225 872 chr18 45642537 45670478 + 0 NA intron (NM_001318841, intron 3 of 4) intron (NM_001318841, intron 3 of 4) 7173 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding nan 2.599 1.056 1.507 1.116 0.515 1.035 0.045 0.080 0.124 0.091 3.968 3.802 0.031 0.070 0.386 0.396 2.029 1.940 2.659 2.920 2.281 0.702 0.198 0.258 0.276 0.505 1.875 1.966 1.253 1.514 0.263 0.295 1.459 1.442 0.417 nan 2.759 1.663 3.794 3.137 0.338 0.082 1.035 3.968 0.132 0.247 0.039 0.482 498 chr12 103419093 103426965 + 0 NA Intergenic MIRc|SINE|MIR 71577 NM_004316 429 Hs.703025 NM_004316 ENSG00000139352 ASCL1 ASH1|HASH1|MASH1|bHLHa46 achaete-scute family bHLH transcription factor 1 protein-coding 0.903 1.618 nan 1.503 1.060 0.601 1.187 0.096 0.045 0.427 0.397 1.401 6.640 0.070 0.113 0.273 0.089 0.140 0.225 1.889 1.845 1.143 0.391 0.136 0.201 0.180 0.375 1.850 1.926 0.594 0.354 0.046 0.138 0.568 0.307 0.292 0.629 2.846 1.784 6.742 7.609 0.121 0.031 1.187 1.401 0.112 0.467 0.012 0.109 646 chr15 56533139 56548992 + 0 NA Intergenic Intergenic -5582 NM_022841 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 1.779 1.464 2.544 0.747 1.832 1.121 1.415 0.821 0.122 0.931 0.739 1.233 2.549 0.919 0.082 0.805 1.236 0.878 1.336 1.651 1.691 1.877 0.681 2.072 2.001 2.329 2.756 1.336 1.994 5.762 6.224 0.943 1.977 4.056 3.962 1.682 2.698 1.072 0.640 0.315 0.651 1.595 0.433 1.415 1.233 0.442 0.993 1.105 0.838 781 chr17 39927802 39950224 + 0 NA intron (NM_021991, intron 1 of 14) intron (NM_021991, intron 1 of 14) 3951 NM_021991 3728 Hs.514174 NM_002230 ENSG00000173801 JUP ARVD12|CTNNG|DP3|DPIII|PDGB|PKGB junction plakoglobin protein-coding nan 1.841 1.849 0.764 1.010 0.522 0.634 0.634 0.278 0.601 0.328 1.250 1.907 0.590 0.087 1.457 2.138 0.896 1.816 nan 1.511 2.177 0.644 2.339 2.513 0.259 0.520 4.288 4.349 nan 1.176 0.915 1.449 0.582 0.690 0.622 1.453 1.246 0.748 0.893 0.674 0.098 1.009 0.634 1.250 0.397 2.571 0.478 0.313 941 chr19 19169034 19176501 + 0 NA Intergenic MIR|SINE|MIR -2003 NM_001321544 284439 Hs.303669 NM_178526 ENSG00000181035 SLC25A42 - solute carrier family 25 member 42 protein-coding 1.768 1.095 1.593 4.912 0.992 0.473 0.551 0.421 0.144 0.421 0.222 1.201 2.132 0.463 0.072 0.857 1.391 0.951 1.237 1.929 1.948 1.776 0.524 0.819 0.869 1.106 1.473 8.773 14.570 2.612 2.887 0.535 0.702 0.577 0.607 1.561 3.132 5.471 2.268 0.933 1.501 0.090 0.276 0.551 1.201 0.196 3.948 0.145 0.795 1239 chr22 44565697 44577246 + 0 NA intron (NM_001137605, intron 1 of 13) intron (NM_001137605, intron 1 of 13) 2635 NM_001137605 64098 Hs.658995 NM_022141 ENSG00000138964 PARVG - parvin gamma protein-coding 0.778 nan 0.490 1.006 0.322 0.180 0.556 0.123 0.055 0.690 0.166 5.410 1.658 0.084 0.065 0.310 0.374 0.355 0.660 1.751 1.326 2.735 1.244 0.414 0.500 0.146 nan 2.577 2.855 nan 0.195 0.142 0.258 0.296 0.276 0.225 0.382 0.545 0.477 0.131 0.935 0.042 0.109 0.556 5.410 0.084 0.175 0.017 0.063 43 chr1 22831596 22855547 + 0 NA intron (NM_001330398, intron 10 of 15) intron (NM_001330398, intron 10 of 15) -46424 NM_001006943 2046 Hs.283613 NM_020526 ENSG00000070886 EPHA8 EEK|EK3|HEK3 EPH receptor A8 protein-coding 1.034 0.826 nan 0.710 0.382 0.131 0.354 0.097 0.091 0.325 0.247 0.030 1.067 0.095 0.120 0.322 0.440 0.266 0.387 1.106 1.106 0.423 0.175 0.354 0.383 0.671 0.899 1.946 2.232 0.520 0.353 0.251 0.326 0.281 0.293 0.456 1.042 1.246 0.675 1.564 4.003 0.131 0.084 0.354 0.030 0.252 0.110 0.050 0.268 116 chr1 119582718 119596047 + 0 NA promoter-TSS (NR_126447) promoter-TSS (NR_126447) -646 NR_126447 104472716 Hs.689536 NR_126447 WARS2-IT1 - WARS2 intronic transcript 1 ncRNA nan 0.838 1.083 0.121 0.248 0.126 0.126 0.251 0.181 0.059 0.049 0.072 0.336 0.049 0.170 0.387 0.444 0.314 0.401 0.292 nan 0.179 0.113 0.545 0.609 3.748 4.374 0.297 0.303 0.329 0.128 0.692 0.673 0.057 0.081 0.436 1.058 0.717 0.502 0.047 0.093 0.012 0.139 0.126 0.072 0.036 0.046 0.329 0.326 916 chr19 4057816 4068230 + 0 NA intron (NM_015898, intron 1 of 2) intron (NM_015898, intron 1 of 2) 2504 NM_001317990 51341 Hs.591384 NM_015898 ENSG00000178951 ZBTB7A FBI-1|FBI1|LRF|TIP21|ZBTB7|ZNF857A|pokemon zinc finger and BTB domain containing 7A protein-coding 3.054 1.881 7.757 1.989 2.151 1.285 2.301 1.503 0.217 1.974 0.852 3.852 4.643 2.995 0.080 2.211 3.460 2.203 2.944 3.314 2.750 1.582 0.742 4.990 4.778 1.839 2.625 5.773 nan 4.718 5.130 1.005 1.994 2.193 1.644 2.532 3.898 1.588 0.787 0.902 4.566 0.843 1.373 2.301 3.852 0.878 1.930 0.964 1.582 773 chr17 37718462 37736446 + 0 NA Intergenic L2c|LINE|L2 36721 NM_006160 4761 Hs.322431 NM_006160 ENSG00000171532 NEUROD2 NDRF|bHLHa1 neuronal differentiation 2 protein-coding nan 1.038 0.706 0.181 1.443 0.744 0.811 0.167 0.133 0.341 0.166 0.553 1.114 0.312 0.082 2.552 4.734 0.579 0.574 nan 1.201 0.863 0.417 0.839 0.945 1.255 2.135 1.364 2.804 nan 2.009 0.368 0.562 0.619 0.305 0.681 0.924 1.729 0.941 0.121 0.510 0.195 0.089 0.811 0.553 0.678 0.300 0.116 0.214 1162 chr20 45005631 45018545 + 0 NA exon (NM_001318253, exon 10 of 22) exon (NM_001318253, exon 10 of 22) -18991 NM_001281457 51006 Hs.593344 NM_015945 ENSG00000080189 SLC35C2 BA394O2.1|C20orf5|CGI-15|OVCOV1 solute carrier family 35 member C2 protein-coding nan nan 0.975 0.257 0.319 0.132 0.062 0.292 0.088 0.169 0.087 0.084 0.439 0.079 0.104 3.644 4.987 0.794 0.439 0.506 0.595 nan 0.287 0.572 0.702 0.934 1.405 0.420 0.427 nan 1.960 0.701 1.314 0.064 0.082 0.447 1.182 0.969 0.439 0.022 0.112 0.022 0.847 0.062 0.084 0.202 0.032 0.501 0.124 1524 chr6 135583126 135595161 + 0 NA Intergenic Intergenic 28845 NR_030317 693126 NR_030317 ENSG00000207689 MIR548A2 MIRN548A2 microRNA 548a-2 ncRNA 0.866 1.224 2.855 1.292 2.979 1.685 0.478 0.050 0.094 0.468 0.358 4.541 0.801 0.090 0.113 1.028 0.855 2.243 3.378 4.908 5.114 6.813 1.937 1.513 1.689 0.205 0.363 2.560 1.542 0.588 0.237 0.500 0.557 0.690 0.590 0.270 nan 1.437 0.844 0.561 0.435 0.115 0.473 0.478 4.541 0.162 0.194 0.111 0.140 834 chr17 78799236 78814996 + 0 NA intron (NM_001163034, intron 9 of 29) intron (NM_001163034, intron 9 of 29) -27684 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 2.670 1.734 2.920 1.098 1.172 0.484 3.987 0.930 0.256 1.171 0.508 1.595 4.007 0.089 0.126 1.715 1.798 1.219 1.781 3.374 2.399 2.872 0.892 0.977 1.048 nan 4.670 2.628 4.137 2.976 2.891 0.966 1.370 1.821 2.623 1.848 2.286 nan 1.262 0.704 1.805 0.241 0.663 3.987 1.595 0.985 4.872 0.572 0.801 205 chr1 205546597 205552970 + 0 NA intron (NM_181644, intron 2 of 9) intron (NM_181644, intron 2 of 9) 11671 NM_181644 148808 Hs.567714 NM_181644 ENSG00000174514 MFSD4A MFSD4|UNQ3064 major facilitator superfamily domain containing 4A protein-coding 1.029 7.284 0.995 0.320 0.485 0.352 0.362 0.116 0.128 0.296 0.090 0.309 3.847 0.070 0.134 0.577 0.502 0.732 1.719 1.411 1.341 0.676 0.355 nan nan 0.289 0.598 0.550 0.777 0.434 0.365 0.302 0.333 0.572 0.653 0.674 1.106 0.951 0.706 1.020 0.512 0.060 0.087 0.362 0.309 0.045 0.089 0.045 0.214 863 chr18 42318831 42326613 + 0 NA intron (NM_001130110, intron 2 of 3) intron (NM_001130110, intron 2 of 3) 61859 NM_015559 26040 Hs.435458 NM_015559 ENSG00000152217 SETBP1 MRD29|SEB SET binding protein 1 protein-coding nan 1.968 4.685 1.095 0.945 0.442 6.626 0.503 0.020 1.328 0.807 2.031 2.461 0.014 0.063 4.769 6.212 0.538 1.099 8.467 8.142 2.969 0.999 0.049 0.069 2.062 2.713 0.648 0.765 8.930 10.640 1.211 2.021 7.189 7.883 2.621 nan 6.465 3.575 1.522 0.207 3.424 5.321 6.626 2.031 1.931 0.770 0.610 2.052 1401 chr5 69203905 69211585 + 0 NA Intergenic Intergenic -113327 NM_022968 8293 Hs.726820 NM_021967 ENSG00000172058 SERF1A 4F5|FAM2A|H4F5|SERF1|SMAM1 small EDRK-rich factor 1A protein-coding 2.465 6.009 2.572 0.447 0.552 0.337 0.473 0.355 0.255 0.163 0.147 0.257 0.477 0.226 0.174 0.398 0.402 1.127 1.355 0.820 0.995 1.524 0.649 0.883 0.761 1.388 2.311 0.815 1.013 1.166 0.765 0.248 0.605 0.456 0.599 0.719 1.000 1.047 0.615 0.065 0.401 0.248 0.318 0.473 0.257 0.052 0.079 0.039 0.151 1563 chr7 26191360 26197847 + 0 NA intron (NM_004289, intron 1 of 3) intron (NM_004289, intron 1 of 3) 2756 NM_004289 9603 Hs.404741 NM_004289 ENSG00000050344 NFE2L3 NRF3 nuclear factor, erythroid 2 like 3 protein-coding 3.231 1.683 5.168 1.021 0.860 0.391 1.003 0.393 0.150 0.649 0.506 0.522 3.435 1.071 0.105 4.683 4.548 8.247 10.603 1.372 1.141 4.714 1.257 2.815 2.900 0.889 1.662 2.303 3.368 1.381 2.201 3.422 4.407 0.858 0.522 2.505 nan 0.853 0.720 0.856 2.184 0.126 0.646 1.003 0.522 0.270 0.622 1.695 1.997 119 chr1 145506485 145508924 + 0 NA exon (NM_005105, exon 1 of 6) exon (NM_005105, exon 1 of 6) 147 NM_005105 9939 Hs.591455 NM_005105 ENSG00000265241 RBM8A BOV-1A|BOV-1B|BOV-1C|C1DELq21.1|DEL1q21.1|MDS014|RBM8|RBM8B|TAR|Y14|ZNRP|ZRNP1 RNA binding motif protein 8A protein-coding 9.091 6.289 7.351 8.348 7.878 3.822 11.342 5.827 0.717 5.318 3.236 8.082 24.989 6.868 0.265 14.167 9.101 15.356 21.015 16.824 16.915 13.792 8.372 22.935 24.727 8.847 10.905 12.209 18.430 10.926 10.486 15.603 18.092 6.990 9.207 11.242 11.656 6.561 3.488 7.617 9.977 1.396 3.476 11.342 8.082 2.394 7.527 7.643 4.332 1587 chr7 91259998 91273374 + 0 NA Intergenic Intergenic 243348 NM_001301134 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding nan 0.964 nan 1.267 1.116 0.736 0.468 0.157 0.048 0.385 0.307 2.876 1.582 0.071 0.112 0.375 0.278 0.262 0.292 1.095 1.004 6.867 3.438 0.242 0.297 0.772 1.044 3.185 2.509 0.418 0.183 0.202 0.494 0.465 0.518 0.249 nan 1.190 1.067 1.366 0.212 0.071 0.077 0.468 2.876 0.051 1.787 0.111 0.249 796 chr17 46047204 46102669 + 0 NA Intergenic AluSq2|SINE|Alu 26614 NM_001278217 80279 Hs.20157 NM_025197 ENSG00000108465 CDK5RAP3 C53|HSF-27|IC53|LZAP|MST016|OK/SW-cl.114|PP1553 CDK5 regulatory subunit associated protein 3 protein-coding 3.384 1.958 nan 0.725 3.407 1.678 3.210 0.328 0.195 0.775 0.511 1.254 3.021 0.296 0.105 1.394 1.751 0.589 1.087 1.854 nan 3.652 0.989 1.119 1.261 2.282 3.133 2.489 nan 4.628 3.735 0.809 1.195 4.420 4.970 2.971 9.200 2.175 1.143 1.507 1.497 2.182 3.057 3.210 1.254 1.455 0.603 0.561 4.171 1701 chr8 145702676 145716350 + 0 NA intron (NM_032902, intron 2 of 12) intron (NM_032902, intron 2 of 12) 5779 NM_001329444 84988 Hs.521937 NM_032902 ENSG00000160972 PPP1R16A MYPT3 protein phosphatase 1 regulatory subunit 16A protein-coding 1.744 0.943 nan 1.405 1.588 0.489 1.188 0.350 0.211 0.252 0.109 1.212 3.411 0.601 0.097 1.133 1.471 1.370 1.944 nan 2.506 nan 0.488 1.649 1.591 0.885 1.396 1.006 1.280 0.915 1.078 5.373 3.819 0.615 0.637 0.793 1.430 1.254 0.536 0.522 1.234 0.105 0.915 1.188 1.212 0.240 0.954 0.800 0.226 349 chr11 62301028 62324462 + 0 NA intron (NM_001620, intron 1 of 4) intron (NM_001620, intron 1 of 4) 414 NM_001346446 79026 Hs.502756 NM_001620 ENSG00000124942 AHNAK AHNAKRS|PM227 AHNAK nucleoprotein protein-coding nan 1.072 1.069 0.684 0.614 0.246 1.937 1.404 0.263 0.818 0.195 0.720 1.384 2.132 0.144 1.059 1.477 0.589 1.266 1.291 1.357 2.630 0.982 1.317 1.392 0.495 0.984 3.080 3.137 0.986 0.957 2.611 4.938 1.735 1.329 0.952 1.867 0.776 0.672 2.332 0.830 0.301 0.129 1.937 0.720 0.111 0.190 3.367 0.522 909 chr18 77193812 77228600 + 0 NA intron (NM_172389, intron 5 of 9) CpG 50932 NM_001278673 4772 Hs.534074 NM_006162 ENSG00000131196 NFATC1 NF-ATC|NF-ATc1.2|NFAT2|NFATc nuclear factor of activated T-cells 1 protein-coding nan nan 0.483 0.031 0.938 0.452 0.581 0.056 0.051 0.091 0.100 0.512 0.357 0.053 0.061 2.951 3.419 3.456 4.044 0.796 nan 0.691 0.273 0.563 0.568 0.068 0.165 0.157 nan 0.329 0.247 0.630 1.006 0.144 0.200 0.055 0.115 0.273 0.352 0.296 0.051 0.046 0.284 0.581 0.512 0.134 0.038 0.371 0.029 1457 chr6 10393598 10431944 + 0 NA promoter-TSS (NM_001032280) promoter-TSS (NM_001032280) -164 NM_001032280 7020 Hs.519880 NM_003220 ENSG00000137203 TFAP2A AP-2|AP-2alpha|AP2TF|BOFS|TFAP2 transcription factor AP-2 alpha protein-coding 1.411 nan 2.234 2.064 1.542 0.885 3.022 0.534 0.134 1.227 0.793 3.999 3.274 0.717 0.101 2.791 3.269 2.435 3.686 2.354 1.930 3.556 1.257 2.109 2.073 1.071 1.471 0.255 0.253 1.003 0.712 0.758 1.513 4.391 4.045 0.776 1.311 1.857 1.023 1.187 0.572 1.372 2.568 3.022 3.999 0.041 0.732 0.733 0.362 1005 chr2 2641645 2671458 + 0 NA Intergenic Intergenic -321466 NM_001303052 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 0.460 0.612 1.149 0.470 0.833 0.448 0.437 0.035 0.059 0.590 0.256 2.266 2.747 0.040 0.066 0.433 0.689 0.247 0.231 2.490 2.609 1.339 0.432 0.358 0.366 0.427 0.785 2.909 2.628 1.598 1.680 0.287 0.349 0.284 0.197 0.152 0.225 1.329 0.864 2.477 1.298 0.039 0.059 0.437 2.266 0.572 2.363 0.047 0.025 731 chr17 4869496 4874161 + 0 NA promoter-TSS (NM_004890) promoter-TSS (NM_004890) -696 NM_004890 9552 Hs.90436 NM_004890 ENSG00000091640 SPAG7 ACRP|FSA-1 sperm associated antigen 7 protein-coding 4.172 2.193 3.386 2.635 4.232 2.733 5.410 1.625 0.171 1.150 0.582 4.343 7.543 4.763 0.129 7.247 9.838 5.056 8.518 6.089 5.722 6.445 2.188 8.523 10.021 3.130 4.120 8.677 9.731 4.198 3.400 2.879 4.892 2.478 2.304 4.128 8.228 1.999 0.840 8.504 3.336 0.610 1.579 5.410 4.343 1.082 6.937 2.337 3.145 743 chr17 8053399 8068854 + 0 NA Intergenic AluSx|SINE|Alu 5068 NM_001330125 6844 Hs.25348 NM_014232 ENSG00000220205 VAMP2 SYB2|VAMP-2 vesicle associated membrane protein 2 protein-coding 2.829 2.462 2.298 1.251 3.342 1.677 2.940 1.798 0.186 0.875 0.458 2.510 5.538 2.387 0.090 2.982 4.179 3.473 5.639 5.338 4.230 5.056 2.844 2.738 2.777 1.384 1.923 4.027 7.049 1.778 1.639 1.487 2.155 1.180 1.273 4.982 9.156 0.634 0.388 1.540 2.012 0.218 1.630 2.940 2.510 0.522 3.325 0.905 3.195 1365 chr5 2684440 2714584 + 0 NA Intergenic Intergenic 52257 NM_001134222 153572 Hs.282089 NM_033267 ENSG00000170561 IRX2 IRXA2 iroquois homeobox 2 protein-coding 0.342 0.669 0.777 0.118 0.435 0.266 0.239 0.163 0.096 0.073 0.131 2.602 0.471 0.029 0.099 0.313 0.141 0.305 nan 0.882 0.978 0.092 0.060 0.045 0.035 0.156 0.304 nan 0.154 nan 0.319 0.150 0.197 0.053 0.093 0.056 0.124 0.177 nan 0.791 0.262 0.028 0.082 0.239 2.602 0.071 0.032 0.039 0.008 1113 chr2 232326703 232335772 + 0 NA Intergenic Intergenic -2032 NM_005381 4691 Hs.79110 NM_005381 ENSG00000115053 NCL C23 nucleolin protein-coding 4.325 nan 3.849 3.722 3.173 1.610 2.576 0.777 0.143 1.478 0.519 3.157 5.526 3.104 0.134 5.406 5.348 3.964 5.314 4.710 4.291 4.241 2.249 8.386 8.131 2.685 3.649 8.474 nan 6.828 9.236 3.488 6.070 2.983 2.733 7.250 6.347 1.840 1.123 2.343 1.674 0.440 1.194 2.576 3.157 0.652 1.645 1.646 1.965 355 chr11 64033576 64041798 + 0 NA TTS (NM_001316314) TTS (NM_001316314) -14124 NM_001170726 56834 Hs.523763 NM_020155 ENSG00000173264 GPR137 C11orf4|GPR137A|TM7SF1L1 G protein-coupled receptor 137 protein-coding nan 2.048 3.160 2.758 2.417 1.111 1.992 1.339 0.326 1.042 0.663 1.979 9.324 4.505 0.235 3.593 5.454 2.811 4.180 4.062 3.892 4.794 1.638 5.082 5.168 3.413 5.044 4.376 5.470 3.140 3.416 2.555 5.003 2.845 3.104 2.431 3.835 2.602 1.249 3.693 2.745 0.762 1.613 1.992 1.979 1.331 2.248 3.512 1.310 1244 chr3 5017536 5029801 + 0 NA intron (NM_003670, intron 4 of 4) intron (NM_003670, intron 4 of 4) -2022 NR_037903 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 2.656 5.174 1.835 0.343 1.576 0.829 1.629 3.547 0.162 0.999 0.659 0.215 6.735 6.935 0.122 0.549 2.369 1.935 5.354 2.871 1.938 0.317 0.182 3.322 3.331 0.693 0.992 1.595 2.337 1.615 2.729 1.731 3.104 2.587 2.703 1.384 3.062 0.349 0.280 1.084 1.496 1.004 1.314 1.629 0.215 0.412 4.490 2.295 1.164 16 chr1 6404841 6455166 + 0 NA intron (NM_007274, intron 1 of 8) Tigger1|DNA|TcMar-Tigger -9239 NM_181865 11332 Hs.126137 NM_007274 ENSG00000097021 ACOT7 ACH1|ACT|BACH|CTE-II|LACH|LACH1|hBACH acyl-CoA thioesterase 7 protein-coding 1.427 nan 1.350 1.718 0.641 0.348 0.331 0.952 0.310 0.293 0.208 0.371 1.939 1.344 0.141 0.803 1.015 0.528 0.901 1.512 1.393 0.672 0.294 1.356 1.389 0.892 nan nan 4.593 nan 0.685 0.720 0.998 0.330 0.343 0.938 1.510 0.862 0.590 2.620 1.020 0.068 0.176 0.331 0.371 0.336 0.361 0.456 0.383 144 chr1 156250748 156254606 + 0 NA promoter-TSS (NR_026678) promoter-TSS (NR_026678) 4 NM_001323614 23381 Hs.516837 NM_015327 ENSG00000198952 SMG5 EST1B|LPTS-RP1|LPTSRP1|SMG-5 SMG5, nonsense mediated mRNA decay factor protein-coding 5.708 nan 5.331 3.686 3.928 1.843 3.735 3.038 0.291 3.429 1.831 3.873 25.096 4.162 0.184 6.458 6.754 8.831 11.664 7.299 nan 8.398 3.546 6.151 6.312 4.884 6.862 10.320 13.909 5.430 5.543 6.388 10.951 3.721 5.447 8.059 8.450 3.650 1.776 2.320 3.797 0.742 1.685 3.735 3.873 1.082 3.502 2.956 2.031 442 chr12 10305987 10346499 + 0 NA intron (NM_001079815, intron 1 of 5) AluSx|SINE|Alu -1453 NM_001172633 4973 Hs.412484 NM_002543 ENSG00000173391 OLR1 CLEC8A|LOX1|LOXIN|SCARE1|SLOX1 oxidized low density lipoprotein receptor 1 protein-coding 0.671 0.567 0.653 0.260 0.196 0.118 0.075 0.083 0.056 0.127 0.155 0.055 0.417 0.134 0.138 0.185 0.119 2.063 7.159 nan 0.429 0.420 0.175 0.413 0.378 0.143 0.281 0.336 0.417 0.237 0.073 0.208 0.285 0.056 0.086 0.297 0.491 0.192 0.236 0.027 0.062 0.021 0.021 0.075 0.055 0.024 0.111 0.063 0.098 964 chr19 42652711 42665240 + 0 NA Intergenic Intergenic -21310 NR_036208 100422980 NR_036208 ENSG00000266226 MIR4323 - microRNA 4323 ncRNA 1.669 1.398 1.284 1.601 2.150 1.123 5.847 0.049 0.038 0.220 0.129 2.295 1.532 0.078 0.067 0.293 0.577 0.126 0.156 2.567 3.367 3.881 1.428 0.218 0.250 0.402 0.888 2.222 2.591 0.822 0.545 0.403 0.427 0.190 0.158 0.912 1.862 3.759 1.938 0.503 0.447 0.038 0.556 5.847 2.295 0.133 1.315 0.056 0.137 298 chr11 6341979 6355774 + 0 NA Intergenic MSTD|LTR|ERVL-MaLR -7136 NM_145040 112464 Hs.434044 NM_145040 ENSG00000170955 PRKCDBP CAVIN3|HSRBC|SRBC|cavin-3 protein kinase C delta binding protein protein-coding 0.528 1.197 0.674 0.373 0.232 0.118 0.139 0.811 0.187 0.897 0.484 0.892 0.440 0.014 0.082 0.553 0.269 0.239 0.433 0.268 0.361 8.093 2.805 0.176 0.215 0.178 0.308 1.289 1.174 0.416 0.260 0.167 0.293 1.895 1.867 0.103 0.199 1.988 1.054 0.026 0.204 0.361 0.035 0.139 0.892 0.071 0.107 0.043 0.045 162 chr1 164526305 164539296 + 0 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 4203 NM_002585 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 - PBX homeobox 1 protein-coding 2.145 nan 2.744 3.319 2.751 1.204 2.284 1.544 0.133 1.442 1.182 1.679 7.820 0.176 0.125 1.283 2.336 2.368 3.941 5.781 nan 2.441 1.057 0.917 0.846 4.820 5.638 2.257 nan 1.910 1.709 1.091 2.206 2.580 1.991 2.687 3.851 1.826 0.877 1.092 3.606 0.602 1.075 2.284 1.679 0.060 0.829 0.953 1.724 978 chr19 48406569 48420955 + 0 NA Intergenic L1P4|LINE|L1 -2546 NR_024220 100170225 Hs.717052 NR_024220 SNAR-C1 - small ILF3/NF90-associated RNA C1 snRNA 1.711 1.398 1.569 0.147 1.105 0.557 0.472 0.216 0.199 0.105 0.202 0.141 0.373 12.263 0.792 0.544 0.340 0.238 0.332 0.531 0.614 0.914 0.387 0.626 0.528 0.510 0.899 0.606 0.661 1.120 0.306 0.313 0.464 0.189 0.383 0.789 1.741 0.680 0.869 0.058 0.174 0.101 0.121 0.472 0.141 0.088 0.333 0.108 0.352 974 chr19 48268977 48283961 + 0 NA Intergenic L2a|LINE|L2 -4372 NR_132382 106144593 Hs.421907 NR_132382 ENSG00000269656 GLTSCR2-AS1 - GLTSCR2 antisense RNA 1 ncRNA 1.536 2.586 1.477 2.498 5.580 3.050 1.236 0.452 0.237 1.398 0.747 3.959 3.840 1.955 0.150 1.145 1.567 1.317 1.981 3.095 3.867 5.545 3.467 2.204 2.313 0.822 1.325 4.759 6.892 1.913 1.610 1.368 1.896 1.918 1.615 1.365 2.440 3.167 1.771 1.780 1.761 0.310 0.217 1.236 3.959 0.355 0.834 0.399 0.926 895 chr18 59992537 60000448 + 0 NA intron (NM_003839, intron 1 of 9) intron (NM_003839, intron 1 of 9) 3972 NM_001270950 8792 Hs.204044 NM_003839 ENSG00000141655 TNFRSF11A CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCER TNF receptor superfamily member 11a protein-coding nan 1.094 1.082 1.553 0.728 0.547 0.776 0.153 0.060 1.069 0.358 0.781 1.769 0.181 0.086 0.777 0.685 1.044 1.787 2.617 2.373 7.707 1.821 2.210 2.205 1.163 1.506 1.542 2.169 0.931 1.300 0.351 0.548 1.937 2.090 0.437 0.805 nan 3.662 0.171 0.596 0.383 0.221 0.776 0.781 0.283 0.320 0.012 0.248 574 chr14 24006113 24027274 + 0 NA intron (NM_033400, intron 1 of 9) intron (NM_033400, intron 1 of 9) 4165 NM_033400 85446 Hs.508937 NM_033400 ENSG00000136367 ZFHX2 ZFH-5|ZNF409 zinc finger homeobox 2 protein-coding nan 1.391 1.405 2.212 2.178 1.230 1.501 0.718 0.266 0.884 0.432 2.233 2.977 1.159 0.137 1.707 2.251 1.363 1.635 3.731 3.674 3.823 1.108 2.289 2.393 2.175 3.169 2.442 nan 2.869 2.635 1.759 2.640 2.071 2.120 0.843 2.236 2.980 1.411 1.093 1.848 0.453 0.906 1.501 2.233 0.715 2.890 1.617 0.538 428 chr12 6676363 6678418 + 0 NA 5' UTR (NM_001258309, exon 1 of 17) 5' UTR (NM_001258309, exon 1 of 17) 108 NM_001258309 4839 Hs.534334 NM_006170 ENSG00000111641 NOP2 NOL1|NOP120|NSUN1|p120 NOP2 nucleolar protein protein-coding 3.439 nan 3.411 8.637 3.365 2.484 3.680 0.913 0.233 2.802 1.603 3.198 9.618 6.066 0.260 3.129 3.234 5.027 7.854 7.173 6.787 11.517 4.181 7.387 8.026 5.864 7.479 5.288 6.442 5.652 5.950 3.027 5.390 4.744 5.764 5.995 7.827 2.247 0.970 3.185 3.484 1.116 2.571 3.680 3.198 6.798 0.905 1.251 2.419 1385 chr5 50254241 50271060 + 0 NA Intergenic Intergenic 3371 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA nan nan 0.759 0.447 4.016 2.143 5.111 0.106 0.067 2.651 1.317 4.047 13.927 0.543 0.149 0.142 0.102 10.509 9.054 11.404 10.821 nan 1.480 0.083 0.096 0.174 0.330 0.294 0.497 nan 4.917 0.080 0.104 12.288 11.685 0.201 0.299 3.204 1.836 7.393 0.579 3.977 1.103 5.111 4.047 0.184 0.097 0.028 0.132 1455 chr6 7121221 7157040 + 0 NA intron (NM_001003700, intron 1 of 11) intron (NM_001003700, intron 1 of 11) 31044 NM_001003699 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 1.532 2.118 2.623 2.061 1.553 0.756 0.455 0.265 0.153 1.045 0.569 4.114 2.254 0.482 0.142 3.276 4.354 1.640 2.268 2.191 2.549 1.814 0.623 1.695 1.835 0.867 1.206 4.498 5.034 0.774 0.538 1.533 2.443 2.689 2.977 1.335 2.341 2.795 1.506 1.665 2.185 0.719 0.972 0.455 4.114 0.282 1.291 1.878 0.430 1511 chr6 109773934 109793705 + 0 NA TTS (NM_014797) TTS (NM_014797) 3352 NM_001286613 64780 Hs.33476 NM_022765 ENSG00000135596 MICAL1 MICAL|MICAL-1|NICAL microtubule associated monooxygenase, calponin and LIM domain containing 1 protein-coding 2.149 nan nan 3.211 0.745 0.405 0.662 0.406 0.114 0.225 0.216 1.042 3.066 0.730 0.137 0.710 1.151 0.781 1.169 2.959 nan 1.739 0.523 0.667 0.718 0.784 1.074 1.402 1.569 nan 1.981 0.265 0.663 0.249 0.194 0.547 0.981 1.209 0.563 3.349 4.329 0.058 0.587 0.662 1.042 0.621 1.043 0.210 0.257 1434 chr5 149155924 149191313 + 0 NA intron (NM_001172699, intron 1 of 10) MER58A|DNA|hAT-Charlie 22115 NM_001172699 133522 Hs.483816 NM_133263 ENSG00000155846 PPARGC1B ERRL1|PERC|PGC-1(beta)|PGC1B PPARG coactivator 1 beta protein-coding nan 1.546 0.680 0.990 0.290 0.127 0.249 0.128 0.086 0.322 0.165 0.183 0.793 0.089 0.122 0.474 0.828 0.323 0.536 0.332 0.308 1.153 0.251 0.739 0.837 0.577 0.973 4.114 4.198 0.774 0.746 0.678 0.793 0.887 1.461 0.438 1.149 0.666 0.447 0.130 0.405 0.136 0.548 0.249 0.183 0.130 0.682 0.372 0.239 651 chr15 61315243 61320532 + 0 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 203615 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 0.602 0.691 nan 0.101 0.426 0.096 0.187 0.103 0.030 0.177 0.125 0.263 0.384 0.038 0.100 0.347 0.396 9.890 5.934 0.303 0.376 nan 0.114 0.170 0.137 0.117 0.246 0.325 0.250 0.484 0.306 0.254 0.269 0.087 0.066 0.258 0.396 0.409 0.427 0.010 0.060 0.018 0.029 0.187 0.263 0.109 0.020 0.038 0.039 1498 chr6 49877253 49883543 + 0 NA Intergenic Intergenic -35589 NM_001205220 167 Hs.109620 NM_001131 ENSG00000124812 CRISP1 AEGL1|ARP|CRISP-1|HEL-S-57|HSCRISP1D|HSCRISP1G|HUMARP cysteine rich secretory protein 1 protein-coding 0.775 1.236 1.937 0.668 1.601 0.878 1.380 0.181 0.127 0.153 0.104 0.800 2.532 0.066 0.120 2.728 1.822 7.099 2.791 0.490 0.647 0.219 0.124 2.042 2.177 0.268 0.354 2.853 nan 0.213 0.124 1.405 2.299 0.286 0.251 0.462 1.454 0.357 0.537 0.312 1.164 0.074 0.151 1.380 0.800 0.179 0.695 1.030 0.275 104 chr1 78440890 78451244 + 0 NA intron (NM_001317099, intron 1 of 3) intron (NM_001317099, intron 1 of 3) 199 NM_001317099 11080 Hs.13852 NM_007034 ENSG00000162616 DNAJB4 DNAJW|DjB4|HLJ1 DnaJ heat shock protein family (Hsp40) member B4 protein-coding nan 2.744 4.559 2.944 3.296 2.036 3.002 1.800 0.389 1.259 0.596 2.505 5.847 2.886 0.121 5.105 4.447 5.979 7.521 6.857 nan 5.545 3.714 12.098 12.835 4.710 nan 8.147 11.249 5.201 5.546 3.521 5.998 3.162 3.693 9.148 9.736 2.810 1.686 2.049 1.974 0.348 1.723 3.002 2.505 0.789 0.893 1.757 2.950 602 chr14 65005636 65019444 + 0 NA Intergenic Intergenic -4080 NM_172365 145376 Hs.144696 NM_172365 ENSG00000165807 PPP1R36 C14orf50 protein phosphatase 1 regulatory subunit 36 protein-coding nan nan 7.864 2.478 2.424 1.327 0.567 0.434 0.260 0.611 0.438 1.890 1.455 1.255 0.194 1.211 1.170 0.331 0.344 2.886 2.409 2.616 0.669 nan 5.229 0.397 0.695 4.121 nan 2.949 2.497 0.993 1.133 5.039 5.621 0.332 0.788 2.611 1.366 0.745 1.455 1.282 2.706 0.567 1.890 0.971 1.344 0.631 0.195 635 chr15 31548453 31575133 + 0 NA Intergenic Intergenic -38739 NM_001243538 283710 Hs.591097 NM_001243538 LOC283710 - uncharacterized LOC283710 protein-coding 1.200 nan nan 0.805 0.906 0.505 0.471 0.134 0.102 1.452 0.752 1.860 3.118 0.036 0.070 1.885 2.758 0.525 1.000 3.140 4.021 1.249 0.378 0.240 0.258 0.392 0.603 1.473 1.549 5.184 5.456 0.799 0.951 2.337 1.997 0.824 1.903 0.551 0.379 1.340 0.648 1.047 0.679 0.471 1.860 0.963 1.303 0.549 0.845 760 chr17 30426732 30455397 + 0 NA Intergenic Intergenic -28409 NM_001288754 55288 Hs.655325 NM_018307 ENSG00000126858 RHOT1 ARHT1|MIRO-1|MIRO1 ras homolog family member T1 protein-coding nan 1.068 0.937 0.245 1.977 1.033 0.248 0.753 0.203 1.329 0.768 1.384 1.061 0.750 0.248 0.608 0.824 0.417 0.672 nan 1.175 3.034 0.923 0.638 0.676 0.675 1.024 0.754 1.083 nan 0.718 0.362 0.628 1.941 1.433 0.903 1.605 3.328 1.551 0.672 0.243 0.353 0.291 0.248 1.384 0.239 0.190 0.201 0.445 1774 chr9 137230761 137252075 + 0 NA intron (NM_002957, intron 1 of 9) intron (NM_002957, intron 1 of 9) 23109 NM_002957 6256 Hs.590886 NM_002957 ENSG00000186350 RXRA NR2B1 retinoid X receptor alpha protein-coding nan 0.564 1.157 0.083 0.339 0.167 0.370 0.397 0.113 0.037 0.061 0.185 1.614 0.131 0.035 0.697 1.353 0.265 0.595 0.620 0.553 nan 0.043 0.231 0.315 0.649 0.972 0.218 0.203 3.235 3.776 0.695 0.626 0.359 0.377 0.303 0.263 0.414 0.440 0.816 0.025 0.054 0.011 0.370 0.185 0.959 0.110 0.117 0.035 1031 chr2 44993358 45006785 + 0 NA TTS (NM_024766) TTS (NM_024766) 168575 NR_103785 100506108 Hs.503113 NR_103785 ENSG00000236502 SIX3-AS1 SIX3OS SIX3 antisense RNA 1 ncRNA 2.134 nan 1.667 1.959 4.529 2.446 0.981 0.102 0.060 1.094 0.485 3.607 1.369 0.072 0.105 0.322 0.416 0.407 0.631 nan 4.332 3.382 1.205 0.539 0.418 0.484 0.725 2.404 2.842 2.214 1.845 0.297 0.504 4.613 5.165 2.481 8.652 nan 1.630 0.674 1.548 1.793 0.231 0.981 3.607 0.100 0.349 0.140 3.386 1555 chr7 14256989 14296127 + 0 NA intron (NM_145695, intron 22 of 23) intron (NM_145695, intron 22 of 23) -245508 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding nan 1.038 nan 0.142 0.524 0.274 0.212 0.171 0.095 0.245 0.217 0.337 0.443 0.053 0.154 nan 0.300 6.138 5.955 0.485 0.664 0.654 0.309 0.339 0.373 0.776 1.001 0.390 0.413 0.433 0.159 0.103 0.165 0.258 0.399 0.224 0.299 0.478 0.402 0.052 0.096 0.061 0.087 0.212 0.337 0.017 0.073 0.023 0.038 569 chr14 23745915 23757620 + 0 NA intron (NM_020834, intron 1 of 1) intron (NM_020834, intron 1 of 1) 3542 NM_020834 57594 Hs.632332 NM_020834 ENSG00000215271 HOMEZ KIAA1443 homeobox and leucine zipper encoding protein-coding nan 1.977 3.010 1.490 1.126 0.599 0.471 1.010 0.300 0.366 0.253 0.994 2.675 1.335 0.107 0.467 0.661 1.114 1.573 1.849 1.354 1.317 0.269 1.524 1.604 1.173 1.643 1.529 nan 2.457 2.538 0.685 1.322 1.108 1.094 5.866 10.905 0.881 0.634 1.279 1.293 0.221 0.658 0.471 0.994 0.333 0.771 0.659 4.128 1689 chr8 143368852 143384905 + 0 NA intron (NM_001291931, intron 8 of 10) intron (NM_001291931, intron 8 of 10) 97161 NR_024378 619434 Hs.393308 NR_024378 ENSG00000254008 LINC00051 C8orf43|NCRNA00051 long intergenic non-protein coding RNA 51 ncRNA 1.374 1.212 nan 0.928 0.795 0.449 0.440 0.042 0.020 0.283 0.219 1.684 3.811 0.047 0.061 0.529 0.818 0.109 0.202 nan 5.350 nan 0.245 0.391 0.431 0.625 0.829 0.828 1.332 1.040 1.001 0.454 0.617 0.367 0.268 0.274 0.374 1.713 0.969 5.404 2.538 0.048 0.114 0.440 1.684 0.464 0.172 0.067 0.133 72 chr1 43854429 43872473 + 0 NA intron (NM_015284, intron 1 of 70) AluSx|SINE|Alu 7895 NM_015284 23334 Hs.643560 NM_015284 ENSG00000198198 SZT2 C1orf84|EIEE18|KIAA0467|SZT2A|SZT2B seizure threshold 2 homolog (mouse) protein-coding nan 1.102 nan 0.789 0.846 0.470 0.639 0.690 0.232 0.706 0.397 1.097 1.711 0.919 0.114 0.830 0.920 1.247 1.681 2.083 1.833 0.928 0.376 1.346 1.497 1.092 nan nan 4.347 1.097 0.819 1.155 nan 0.366 0.382 0.852 1.780 2.695 1.102 0.703 0.818 0.095 0.402 0.639 1.097 0.162 0.304 0.405 0.273 1125 chr2 242252195 242258153 + 0 NA promoter-TSS (NM_001321035) promoter-TSS (NM_001321035) 83 NM_005336 3069 Hs.471851 NM_005336 ENSG00000115677 HDLBP HBP|PRO2900|VGL high density lipoprotein binding protein protein-coding 5.838 nan 4.337 4.414 4.782 2.768 3.885 1.896 0.277 2.171 0.963 5.258 9.333 4.762 0.153 7.761 6.896 6.541 9.300 5.788 5.663 5.622 3.593 17.546 19.480 4.312 5.701 6.619 10.874 9.056 8.538 7.002 10.779 3.843 4.485 9.579 7.561 2.138 1.155 4.565 3.284 0.574 1.720 3.885 5.258 0.766 2.407 2.895 2.557 1490 chr6 43056852 43096465 + 0 NA intron (NM_001270398, intron 1 of 19) L1MC5|LINE|L1 32106 NM_001270398 5754 Hs.90572 NM_002821 ENSG00000112655 PTK7 CCK-4|CCK4 protein tyrosine kinase 7 (inactive) protein-coding 1.606 1.097 2.812 0.352 0.612 0.401 1.362 0.518 0.181 0.439 0.212 0.614 1.518 0.205 0.125 1.814 2.656 1.055 1.631 0.747 0.765 2.572 0.831 1.130 1.086 1.372 1.856 1.287 nan 0.866 0.620 1.345 1.594 3.525 3.590 0.695 1.407 1.236 0.768 1.695 1.298 1.154 1.281 1.362 0.614 0.182 0.125 1.611 0.353 566 chr14 21731491 21749331 + 0 NA Intergenic AluJb|SINE|Alu -2773 NM_004500 3183 Hs.508848 NM_004500 ENSG00000092199 HNRNPC C1|C2|HNRNP|HNRPC|SNRPC heterogeneous nuclear ribonucleoprotein C (C1/C2) protein-coding nan 1.472 2.060 2.110 2.071 1.091 1.219 1.594 0.243 0.565 0.449 1.275 2.647 1.274 0.149 1.485 1.308 2.459 3.342 2.758 2.887 2.559 1.771 5.016 5.571 3.064 3.849 2.822 nan 8.542 7.540 1.778 2.647 2.317 2.550 4.513 5.333 1.464 0.921 1.655 1.320 0.368 1.082 1.219 1.275 1.622 0.641 0.616 2.268 1748 chr9 123630370 123669382 + 0 NA intron (NM_001286840, intron 1 of 14) MLT2C1|LTR|ERVL 7298 NM_001286840 26147 Hs.460124 NM_015651 ENSG00000119403 PHF19 MTF2L1|PCL3|TDRD19B PHD finger protein 19 protein-coding nan nan 1.426 1.992 1.385 0.694 1.012 0.412 0.165 0.913 0.419 1.558 nan 0.682 0.094 0.718 0.876 0.895 1.167 3.744 3.358 1.043 0.497 1.448 1.505 0.731 nan 4.664 3.925 1.859 1.816 0.410 0.711 1.652 1.888 0.930 2.287 nan 0.845 3.675 1.666 0.525 0.346 1.012 1.558 0.316 1.011 0.267 0.809 1086 chr2 178103049 178132933 + 0 NA intron (NM_001313902, intron 1 of 3) intron (NM_001313902, intron 1 of 3) 2747 NR_036075 100422824 NR_036075 ENSG00000265396 MIR3128 mir-3128 microRNA 3128 ncRNA 2.776 2.369 2.465 1.861 2.010 1.159 1.533 2.279 0.318 1.142 0.485 1.741 3.516 1.839 0.104 1.576 2.013 4.067 8.632 2.107 1.741 2.281 0.841 3.437 3.494 2.040 2.779 4.389 6.867 2.538 2.934 1.634 3.101 1.439 1.816 1.690 2.370 1.043 0.717 1.393 1.114 0.335 1.043 1.533 1.741 0.673 0.488 1.586 0.631 172 chr1 167142414 167177657 + 0 NA intron (NR_110811, intron 2 of 3) intron (NR_110811, intron 2 of 3) 5007 NR_110811 101928484 Hs.568496 NR_110811 LINC01363 RBSG4 long intergenic non-protein coding RNA 1363 ncRNA 1.404 nan 2.913 0.156 0.265 0.168 0.671 0.122 0.141 0.166 0.163 0.068 0.359 0.055 0.112 0.530 0.361 0.453 0.454 0.453 nan 0.921 0.251 0.119 0.134 0.598 1.047 0.320 nan 1.621 1.542 0.316 0.475 0.736 1.103 1.730 5.417 0.631 0.535 0.030 0.226 0.142 0.051 0.671 0.068 0.187 0.046 0.098 3.774 790 chr17 43441498 43463273 + 0 NA Intergenic AluSz|SINE|Alu 50627 NM_199282 201176 Hs.205326 NM_174919 ENSG00000159314 ARHGAP27 CAMGAP1|PP905|SH3D20|SH3P20 Rho GTPase activating protein 27 protein-coding 0.929 1.247 nan 0.511 1.096 0.648 0.696 1.072 0.332 0.296 0.192 0.350 0.654 5.555 0.272 0.544 0.612 1.072 3.479 0.967 nan 2.389 0.531 0.670 0.703 0.288 0.552 1.207 nan 0.883 0.533 0.460 0.460 0.308 0.554 0.384 0.709 0.977 0.718 0.053 0.131 0.044 0.080 0.696 0.350 0.103 0.107 0.105 0.136 1016 chr2 16251359 16263381 + 0 NA Intergenic Intergenic 66821 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 (non-protein coding) ncRNA 0.689 0.504 0.747 0.483 0.167 0.120 0.075 0.094 0.040 0.052 0.104 0.047 0.333 0.036 0.075 0.367 0.405 0.268 0.265 0.336 0.374 0.245 0.081 0.215 0.179 0.105 0.250 0.285 nan 0.550 0.224 12.533 17.690 0.032 0.052 0.399 nan 0.188 0.331 0.092 0.214 0.008 0.020 0.075 0.047 0.016 0.059 19.649 0.113 1305 chr3 181055625 181063493 + 0 NA intron (NR_075093, intron 2 of 4) AluY|SINE|Alu 100715 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 0.814 0.905 0.630 0.156 0.219 0.102 0.491 0.106 0.206 0.261 0.186 0.030 0.422 0.054 0.069 0.233 0.123 0.088 0.149 0.522 0.595 10.812 3.173 0.145 0.100 0.164 0.362 0.333 0.240 0.794 0.354 0.101 0.158 0.149 0.168 0.196 0.306 0.465 0.469 0.021 0.201 0.025 0.646 0.491 0.030 0.028 0.038 0.037 0.063 723 chr16 89986354 89991565 + 0 NA promoter-TSS (NM_006086) promoter-TSS (NM_006086) 542 NM_001197181 10381 Hs.511743 NM_006086 ENSG00000258947 TUBB3 CDCBM|CDCBM1|CFEOM3|CFEOM3A|FEOM3|TUBB4|beta-4 tubulin beta 3 class III protein-coding nan 3.587 0.782 3.754 4.058 2.339 6.216 1.147 0.276 1.047 0.771 6.346 9.885 3.838 0.094 4.621 6.196 2.468 4.085 5.908 4.345 6.186 1.762 1.596 1.575 1.590 2.295 2.571 5.508 2.591 3.122 0.763 1.858 4.227 3.413 3.123 3.436 2.500 1.499 4.772 3.530 1.122 2.008 6.216 6.346 1.570 6.651 1.158 0.995 1000 chr19 59068084 59076044 + 0 NA intron (NR_027334, intron 1 of 5) intron (NR_027334, intron 1 of 5) 1511 NR_027334 100131691 Hs.743767 NR_027334 ENSG00000267858 MZF1-AS1 - MZF1 antisense RNA 1 ncRNA 4.232 3.219 4.134 4.829 7.423 4.068 4.017 1.729 0.144 1.964 1.027 5.411 5.063 2.543 0.107 9.061 11.954 3.905 5.776 8.507 7.869 10.106 5.824 4.219 4.262 4.010 5.300 6.634 10.053 6.343 6.221 3.481 5.755 5.175 4.260 5.621 5.587 5.450 2.630 4.238 4.271 1.372 2.357 4.017 5.411 0.832 3.881 2.069 2.150 82 chr1 54082862 54098564 + 0 NA intron (NM_147193, intron 1 of 9) intron (NM_147193, intron 1 of 9) 109164 NM_147193 148979 Hs.306691 NM_147193 ENSG00000174332 GLIS1 - GLIS family zinc finger 1 protein-coding 1.324 0.616 0.883 0.100 0.331 0.265 0.171 0.248 0.113 0.091 0.102 0.094 0.490 0.055 0.081 0.373 0.444 0.309 0.401 0.554 0.648 0.370 0.229 0.357 0.330 3.285 3.310 0.303 0.508 1.545 1.627 0.267 0.348 0.088 0.103 0.369 nan 0.515 0.484 0.068 0.125 0.016 0.110 0.171 0.094 0.507 0.045 0.032 0.172 1737 chr9 37983200 37989257 + 0 NA intron (NM_003028, intron 2 of 5) intron (NM_003028, intron 2 of 5) -81878 NR_024872 92014 Hs.634120 NM_033412 ENSG00000122696 SLC25A51 CG7943|MCART1 solute carrier family 25 member 51 protein-coding 1.075 nan 2.374 0.645 1.298 0.561 0.641 0.606 0.080 1.319 0.596 0.823 1.397 0.126 0.063 0.394 0.682 0.521 0.890 0.624 0.544 2.631 0.700 0.301 0.307 1.398 2.145 1.119 1.637 2.414 1.850 0.705 1.390 2.575 3.474 0.421 0.537 7.817 3.849 0.812 0.168 0.968 0.637 0.641 0.823 0.402 4.461 1.175 0.186 1301 chr3 170072379 170077225 + 0 NA promoter-TSS (NM_005414) promoter-TSS (NM_005414) -671 NM_001145098 6498 Hs.536655 NM_005414 ENSG00000136603 SKIL SNO|SnoA|SnoI|SnoN SKI like proto-oncogene protein-coding 9.869 5.021 5.333 5.465 5.204 2.314 4.360 3.348 0.218 4.089 2.019 6.026 5.466 6.911 0.130 3.208 5.670 4.425 6.662 7.223 6.417 10.416 3.116 9.750 9.735 4.061 5.754 8.139 10.378 12.830 14.360 2.649 5.548 6.230 4.923 7.760 10.285 2.221 1.277 5.401 2.221 2.063 4.226 4.360 6.026 1.321 3.035 2.646 4.432 125 chr1 153852218 153855840 + 0 NA intron (NM_020699, intron 1 of 10) intron (NM_020699, intron 1 of 10) 41422 NM_020699 57459 Hs.4779 NM_020699 ENSG00000143614 GATAD2B MRD18|P66beta|p68 GATA zinc finger domain containing 2B protein-coding nan nan 2.392 2.845 5.720 3.542 4.789 1.426 0.358 2.388 1.434 3.971 20.195 0.120 0.189 6.706 5.624 6.352 7.447 16.240 nan 9.118 2.372 0.808 0.811 4.989 5.382 6.710 8.954 6.140 6.505 3.397 5.633 4.433 7.111 2.845 3.544 3.506 2.069 5.192 5.831 0.373 1.647 4.789 3.971 1.204 3.534 3.441 0.375 466 chr12 46116875 46129226 + 0 NA promoter-TSS (NM_152641) promoter-TSS (NM_152641) -442 NM_001347839 196528 Hs.317304 NM_152641 ENSG00000189079 ARID2 BAF200|p200 AT-rich interaction domain 2 protein-coding 5.145 nan 3.346 4.520 5.350 3.077 3.568 2.622 0.300 2.111 1.660 5.396 4.654 2.859 0.141 5.941 7.075 6.764 7.863 11.013 9.960 6.250 3.488 19.245 19.603 4.120 4.723 5.617 9.435 7.430 7.875 3.761 7.983 5.742 5.730 7.230 5.857 2.550 1.356 4.466 5.474 1.538 2.759 3.568 5.396 1.340 2.377 3.181 2.500 1339 chr4 68264106 68266863 + 0 NA Intergenic ALR/Alpha|Satellite|centr 22234 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA nan 30.001 30.376 12.359 17.751 9.511 10.467 8.860 29.867 8.759 16.369 6.950 16.949 5.829 12.837 25.444 15.543 22.075 29.818 22.055 24.645 13.731 11.357 19.086 20.262 15.438 18.354 18.142 15.275 26.868 12.440 15.167 21.273 5.985 9.273 14.756 16.371 10.590 13.275 2.320 4.959 2.487 3.983 10.467 6.950 1.688 3.818 3.685 3.367 606 chr14 75529348 75546622 + 0 NA exon (NM_024643, exon 2 of 3) exon (NM_024643, exon 2 of 3) 1705 NM_001042430 79696 Hs.48642 NM_024643 ENSG00000119703 ZC2HC1C C14orf140|FAM164C zinc finger C2HC-type containing 1C protein-coding 3.320 1.844 1.328 2.696 2.016 1.023 2.040 1.191 0.336 0.662 0.508 2.303 4.487 1.230 0.128 2.192 2.715 1.689 2.553 3.684 3.569 2.264 1.142 6.876 7.552 1.178 1.760 3.928 nan 2.949 2.411 1.446 1.921 2.117 2.052 0.594 0.738 3.615 nan 2.360 4.037 0.364 1.225 2.040 2.303 0.663 0.969 1.008 0.271 1716 chr9 13987860 13996085 + 0 NA Intergenic Intergenic 64002 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA nan nan 1.831 0.715 1.609 0.877 1.904 0.155 0.039 0.325 0.240 1.242 5.720 0.053 0.080 0.151 0.170 0.260 0.325 4.960 4.547 2.719 0.662 0.119 0.102 8.882 11.243 1.296 1.437 0.389 0.160 0.217 0.258 2.750 2.175 0.180 0.291 1.214 1.117 6.377 0.350 0.835 0.120 1.904 1.242 0.140 0.061 0.048 0.030 740 chr17 7587022 7593658 + 0 NA promoter-TSS (NM_001143991) promoter-TSS (NM_001143991) -418 NM_001143991 55135 Hs.408312 NM_018081 ENSG00000141499 WRAP53 DKCB3|TCAB1|WDR79 WD repeat containing antisense to TP53 protein-coding 6.587 3.574 3.872 4.696 10.117 4.710 6.553 2.171 0.169 2.536 1.119 6.905 12.900 14.652 0.575 15.388 15.202 9.771 12.589 15.030 13.149 10.447 7.664 11.470 11.813 5.185 6.909 10.791 14.448 5.957 8.342 10.095 12.461 6.291 5.860 11.195 13.159 2.918 1.546 7.967 4.910 0.789 4.391 6.553 6.905 2.707 4.271 3.500 3.566 930 chr19 13179260 13207389 + 0 NA intron (NM_002501, intron 8 of 9) intron (NM_002501, intron 8 of 9) 20650 NM_005583 4066 Hs.46446 NM_005583 ENSG00000104903 LYL1 bHLHa18 LYL1, basic helix-loop-helix family member protein-coding 2.396 0.714 4.315 0.256 0.815 0.460 1.430 0.300 0.120 0.272 0.158 0.475 0.786 0.499 0.051 1.075 1.806 0.418 0.846 1.850 2.047 2.362 0.655 0.431 0.566 1.340 1.938 1.133 1.124 1.144 0.865 0.418 0.420 0.906 0.997 0.708 1.340 1.380 0.759 1.950 0.233 0.303 0.245 1.430 0.475 0.772 0.461 0.084 0.260 396 chr11 111225998 111240794 + 0 NA intron (NM_006235, intron 1 of 4) intron (NM_006235, intron 1 of 4) 14914 NR_039712 100616330 NR_039712 ENSG00000264032 MIR4491 mir-4491 microRNA 4491 ncRNA 0.674 0.902 0.845 0.188 1.347 0.658 0.165 0.076 0.055 0.128 0.222 0.991 0.731 0.052 0.103 3.413 nan 1.052 1.284 0.636 0.788 1.265 0.271 0.375 0.349 1.044 nan 0.668 0.469 0.434 0.305 1.277 2.125 0.778 1.098 0.251 0.405 0.817 0.651 0.456 0.111 0.168 0.097 0.165 0.991 0.597 0.103 1.375 0.093 447 chr12 11987513 12016788 + 0 NA intron (NM_001987, intron 3 of 7) AluJb|SINE|Alu 199362 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 0.866 1.089 1.131 3.580 2.310 1.252 0.510 0.158 0.072 1.090 0.616 2.025 3.854 0.082 0.108 0.232 0.266 0.492 0.911 nan 2.175 2.453 0.879 0.507 0.587 0.461 0.719 5.542 6.233 0.469 0.293 0.318 0.607 0.171 0.188 0.335 0.633 1.476 0.711 1.277 0.731 0.059 0.027 0.510 2.025 0.046 0.592 0.158 0.194 1004 chr2 2321284 2338416 + 0 NA promoter-TSS (NM_001329847) promoter-TSS (NM_001329847) 93 NM_001329847 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 0.736 1.235 0.606 0.258 6.848 3.606 3.911 0.083 0.075 4.952 2.703 6.345 22.148 0.038 0.098 3.735 5.806 0.143 0.120 12.578 11.806 7.053 5.021 0.121 0.107 5.504 6.387 5.916 7.583 7.938 9.625 0.829 1.561 5.496 4.501 2.395 2.660 5.305 2.823 6.881 0.406 1.128 1.207 3.911 6.345 2.624 2.835 1.028 0.080 139 chr1 155212243 155215696 + 0 NA intron (NM_001005741, intron 1 of 11) AluSx3|SINE|Alu 684 NM_001171811 2629 Hs.282997 NM_000157 ENSG00000177628 GBA GBA1|GCB|GLUC glucosylceramidase beta protein-coding 6.955 5.307 5.617 5.503 5.787 2.838 5.104 5.055 2.047 1.228 0.709 6.198 22.802 4.707 0.394 6.601 6.583 5.274 7.526 10.963 9.212 10.134 4.495 3.313 3.710 7.885 9.213 7.657 12.622 7.523 7.374 5.075 6.468 7.087 7.734 9.103 12.578 3.353 1.738 6.441 10.105 1.630 4.773 5.104 6.198 2.251 6.303 2.667 4.054 944 chr19 31138839 31162605 + 0 NA Intergenic MSTA|LTR|ERVL-MaLR 287422 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 1.241 0.907 2.082 0.166 2.843 1.462 0.372 0.152 0.150 0.066 0.102 0.375 0.386 0.064 0.111 0.411 0.402 0.368 0.554 0.251 0.234 0.221 0.084 0.132 0.110 0.433 0.841 0.164 0.123 nan 0.105 0.794 0.740 0.037 0.082 0.514 1.808 0.582 0.461 3.194 0.146 0.020 0.066 0.372 0.375 0.313 0.047 0.126 0.270 868 chr18 42582093 42599929 + 0 NA intron (NM_015559, intron 4 of 5) intron (NM_015559, intron 4 of 5) -40880 NR_036203 100422829 NR_036203 ENSG00000265957 MIR4319 - microRNA 4319 ncRNA nan 1.172 1.253 0.515 0.765 0.255 3.539 0.567 0.063 0.624 0.441 1.231 1.758 0.018 0.065 0.513 0.481 0.249 0.630 1.478 1.410 1.792 0.640 0.057 0.068 0.994 1.413 0.472 0.609 0.424 0.232 0.343 0.543 1.593 1.821 0.183 nan 4.105 2.588 2.176 0.359 0.300 0.371 3.539 1.231 0.315 0.366 0.303 0.084 734 chr17 7106915 7125779 + 0 NA intron (NR_135527, intron 3 of 20) AluSg4|SINE|Alu -4097 NM_001270447 37 Hs.437178 NM_000018 ENSG00000072778 ACADVL ACAD6|LCACD|VLCAD acyl-CoA dehydrogenase, very long chain protein-coding 2.369 1.560 1.494 0.731 2.246 1.327 2.543 0.431 0.060 0.403 0.218 1.669 2.779 7.248 0.327 2.208 3.025 0.763 1.348 4.765 4.458 2.542 1.594 0.852 0.855 1.252 1.878 2.336 3.946 2.043 1.765 0.695 1.033 0.791 0.675 4.274 10.533 0.981 0.617 1.619 0.929 0.188 0.446 2.543 1.669 1.130 1.581 0.445 4.862 748 chr17 17659674 17696852 + 0 NA intron (NM_030665, intron 2 of 5) MIR|SINE|MIR 4580 NR_024007 140771 Hs.352643 NM_144774 ENSG00000226746 SMCR5 NCRNA00034 Smith-Magenis syndrome chromosome region, candidate 5 (non-protein coding) ncRNA 2.024 1.100 1.946 1.227 2.640 1.486 1.623 0.345 0.047 0.739 0.395 2.348 2.509 0.368 0.040 2.041 3.513 0.408 nan 4.340 4.263 1.356 0.471 0.540 0.467 1.054 1.472 4.667 5.636 nan 6.076 0.626 0.912 0.767 0.818 2.405 3.874 1.589 0.799 1.220 1.880 0.317 1.133 1.623 2.348 0.654 2.227 0.405 2.946 1201 chr21 36507770 36526586 + 0 NA Intergenic Intergenic -95583 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha runt related transcription factor 1 protein-coding 0.618 0.595 0.784 0.114 0.314 0.157 0.334 0.138 0.104 0.025 0.055 0.242 0.539 0.006 0.083 0.731 1.026 4.580 13.135 0.387 0.523 0.399 0.100 0.301 0.348 0.176 0.272 0.441 0.426 0.402 0.158 0.227 0.394 0.077 0.094 0.168 0.220 nan 0.681 0.075 0.189 0.010 0.025 0.334 0.242 0.026 0.027 0.079 0.026 356 chr11 64066466 64074481 + 0 NA intron (NR_133662, intron 8 of 10) AluSg|SINE|Alu -2527 NM_004451 2101 Hs.110849 NM_004451 ENSG00000173153 ESRRA ERR1|ERRa|ERRalpha|ESRL1|NR3B1 estrogen related receptor alpha protein-coding nan 2.456 1.545 2.326 2.141 1.015 1.647 1.492 0.199 0.925 0.563 1.177 8.807 2.116 0.123 3.617 4.685 3.142 3.999 2.528 2.080 3.758 1.447 6.277 6.583 2.285 3.162 2.923 4.873 2.987 3.646 3.406 3.358 3.766 3.021 1.814 2.019 1.802 0.909 1.439 3.409 0.710 0.932 1.647 1.177 0.773 2.644 1.462 0.837 1191 chr21 16372109 16379674 + 0 NA intron (NM_003489, intron 3 of 3) intron (NM_003489, intron 3 of 3) 61235 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 RIP140 nuclear receptor interacting protein 1 protein-coding 1.487 1.077 nan 0.476 3.585 2.048 0.646 0.019 0.021 1.941 1.051 0.016 0.346 0.073 0.076 0.936 1.048 0.780 0.906 0.747 0.929 5.607 2.052 0.111 0.137 0.147 0.204 0.346 0.386 3.224 2.882 0.744 1.240 6.187 7.553 0.964 2.626 4.076 1.686 0.014 0.023 1.332 0.649 0.646 0.016 0.955 0.776 980 chr19 48693105 48708855 + 0 NA TTS (NM_199341) TTS (NM_199341) 27031 NM_199341 374920 Hs.664054 NM_199341 ENSG00000185453 C19orf68 - chromosome 19 open reading frame 68 protein-coding 1.833 1.466 1.212 0.994 1.669 0.813 1.353 0.437 0.082 0.636 0.370 0.522 1.436 1.021 0.136 1.250 1.696 1.001 1.222 1.987 1.876 4.514 1.736 2.221 2.402 1.963 2.795 1.409 2.050 1.890 1.723 0.797 1.021 2.073 1.862 1.802 2.323 2.505 1.407 1.159 0.695 0.290 0.136 1.353 0.522 0.641 0.309 0.402 0.535 323 chr11 33179201 33184991 + 0 NA intron (NM_001033506, intron 1 of 1) intron (NM_001033506, intron 1 of 1) 941 NM_001033506 1479 Hs.44402 NM_001326 ENSG00000176102 CSTF3 CSTF-77 cleavage stimulation factor subunit 3 protein-coding 3.570 3.391 nan 3.443 4.090 1.992 2.546 1.375 0.247 2.435 1.328 2.771 7.356 4.863 0.299 6.941 5.950 6.298 8.425 6.681 5.565 7.994 4.245 12.984 12.922 7.712 8.619 4.584 8.562 6.712 5.848 5.476 7.838 5.990 7.878 4.889 nan 3.781 2.004 3.586 2.337 0.803 1.522 2.546 2.771 1.716 1.647 3.849 1.962 950 chr19 36234844 36237952 + 0 NA promoter-TSS (NM_144987) promoter-TSS (NM_144987) -55 NR_110172 199746 Hs.351558 NM_144987 ENSG00000161265 U2AF1L4 U2AF1-RS3|U2AF1L3|U2AF1L3V1|U2AF1RS3|U2af26 U2 small nuclear RNA auxiliary factor 1 like 4 protein-coding 5.939 2.795 5.021 9.883 4.874 3.024 3.768 2.573 0.054 1.653 0.836 3.908 26.110 4.633 0.132 2.707 3.729 4.071 6.003 5.791 5.344 6.836 3.652 12.948 13.713 4.210 5.142 6.986 10.111 nan 4.458 3.729 5.265 5.319 5.578 4.201 6.419 3.756 1.791 3.092 4.878 0.644 1.662 3.768 3.908 1.250 2.735 2.854 2.220 880 chr18 51771582 51782706 + 0 NA Intergenic AluSc8|SINE|Alu -18705 NM_007195 11201 Hs.438533 NM_007195 ENSG00000101751 POLI RAD30B|RAD3OB DNA polymerase iota protein-coding nan 1.789 1.813 1.135 1.775 0.834 2.377 0.120 0.087 0.328 0.240 3.828 2.065 0.039 0.104 0.588 0.654 0.476 1.496 4.794 5.820 7.023 2.821 0.333 0.408 0.272 0.368 2.447 2.918 1.073 0.917 0.543 0.857 4.955 5.514 0.450 0.540 nan 2.436 2.075 0.695 1.335 0.634 2.377 3.828 0.578 0.255 0.773 0.146 833 chr17 78690175 78768095 + 0 NA intron (NM_001163034, intron 6 of 29) FLAM_C|SINE|Alu 50297 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 1.223 1.122 1.235 1.185 0.983 0.485 1.628 0.656 0.143 0.474 0.374 1.274 2.160 0.104 0.114 0.650 0.867 0.358 0.607 2.785 2.356 1.465 0.413 0.545 0.558 nan 1.869 3.775 3.725 0.874 0.622 0.699 1.066 1.232 1.476 0.483 0.878 nan 0.817 0.801 2.785 0.230 0.260 1.628 1.274 0.262 2.100 0.739 0.176 1740 chr9 77193657 77200500 + 0 NA intron (NM_006914, intron 1 of 9) intron (NM_006914, intron 1 of 9) -83609 NR_125791 103752585 Hs.635501 NR_125791 RORB-AS1 - RORB antisense RNA 1 ncRNA nan nan nan 0.102 0.384 0.054 0.056 0.076 0.024 0.069 0.085 0.139 0.283 0.096 0.069 0.287 0.141 6.961 nan 0.223 nan 0.098 0.008 0.701 0.767 0.083 0.188 0.216 0.246 0.239 0.093 0.104 0.194 0.048 0.093 0.188 0.458 0.858 0.838 0.008 0.091 0.028 0.056 0.139 0.029 0.029 0.111 1100 chr2 208115713 208131765 + 0 NA Intergenic Intergenic -4699 NR_110283 101927865 Hs.574609 NR_110283 LOC101927865 - uncharacterized LOC101927865 ncRNA 1.469 nan 2.449 0.301 2.163 1.026 0.543 0.788 0.160 0.166 0.132 0.399 4.045 0.195 0.074 2.176 2.645 0.579 0.885 0.261 0.306 0.535 0.198 1.497 1.606 6.217 6.493 0.460 0.464 1.186 1.441 0.698 1.108 3.311 4.107 1.264 3.756 0.369 0.284 1.988 1.025 1.296 0.149 0.543 0.399 0.503 0.360 0.819 0.854 988 chr19 49989991 49993930 + 0 NA intron (NM_012423, intron 1 of 7) AluSx1|SINE|Alu 1095 NR_026712 728658 Hs.645344 NR_026712 ENSG00000236552 RPL13AP5 RPL13A_8_1086|bA196N24.2 ribosomal protein L13a pseudogene 5 pseudo 6.568 3.210 4.710 3.743 8.405 4.548 3.859 2.269 0.285 2.580 1.754 5.436 7.053 7.232 0.328 7.035 6.928 8.243 10.418 7.789 8.488 14.133 7.080 18.507 18.764 5.892 9.405 10.187 10.813 14.559 16.635 4.858 9.392 5.060 7.347 20.902 12.401 5.047 3.237 2.630 3.779 0.534 1.912 3.859 5.436 1.304 2.196 2.212 4.216 52 chr1 32698663 32709176 + 0 NA intron (NR_026850, intron 3 of 6) AluSz6|SINE|Alu 3392 NR_026850 339483 Hs.471067 NR_026850 MTMR9LP MTMR9L myotubularin related protein 9-like, pseudogene pseudo 3.617 nan 2.083 4.808 3.016 1.739 1.392 0.278 0.253 0.865 0.556 4.091 5.852 0.807 0.127 2.305 3.497 1.640 2.352 5.739 4.074 nan 1.148 3.276 3.307 0.641 1.113 2.836 4.550 nan 1.064 1.091 1.451 0.753 0.568 0.383 0.847 2.457 nan 5.849 3.357 0.191 1.759 1.392 4.091 0.596 2.065 0.693 0.244 801 chr17 55920132 56038969 + 0 NA intron (NM_001271875, intron 1 of 10) AluSq2|SINE|Alu 1200 NM_001292025 404093 Hs.46679 NM_001271875 ENSG00000180891 CUEDC1 - CUE domain containing 1 protein-coding 2.059 3.097 3.114 1.944 4.119 2.180 1.044 1.363 0.385 1.428 0.772 3.191 5.216 0.335 0.116 1.562 2.675 0.922 1.825 2.649 2.806 3.089 1.208 nan 1.553 1.771 2.361 nan nan 2.648 2.285 1.120 2.001 3.117 3.190 2.175 6.073 2.143 1.129 1.170 2.446 1.597 1.484 1.044 3.191 0.628 0.993 1.431 2.125 728 chr17 2290699 2342983 + 0 NA intron (NR_028335, intron 2 of 2) AluSx|SINE|Alu 1889 NR_028335 284009 Hs.632244 NM_001025459 LOC284009 - uncharacterized LOC284009 ncRNA 2.298 1.675 1.575 1.228 1.939 1.029 1.978 0.658 0.163 0.779 0.279 2.222 3.910 1.148 0.092 1.692 1.647 1.522 2.632 4.014 3.809 2.861 1.990 3.033 3.151 1.072 1.653 2.940 4.872 1.499 1.411 0.447 0.626 0.975 1.097 2.439 5.066 1.219 0.738 2.702 2.331 0.249 0.711 1.978 2.222 0.587 1.336 0.242 1.968 268 chr10 34824946 34842827 + 0 NA intron (NM_001184785, intron 2 of 24) intron (NM_001184785, intron 2 of 24) 270367 NM_001184788 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 0.688 1.043 0.703 0.063 0.852 0.459 0.111 1.629 0.382 0.150 0.143 0.261 0.259 0.110 0.102 0.461 0.291 0.898 nan 0.331 0.355 0.979 0.528 8.350 8.616 0.440 0.630 0.675 0.549 0.192 0.074 0.267 0.554 0.305 0.288 0.267 0.473 0.408 0.361 0.056 0.048 0.107 0.142 0.111 0.261 0.044 0.051 0.232 0.145 1657 chr8 76318780 76334812 + 0 NA intron (NM_001330561, intron 1 of 11) L1ME1|LINE|L1 6891 NM_001330561 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 2.191 0.828 1.025 0.253 2.255 1.150 0.449 0.954 0.100 0.879 0.517 0.253 0.727 0.490 0.101 0.739 0.499 3.067 3.986 1.241 1.101 0.782 0.279 1.998 1.860 1.250 1.494 1.251 1.939 0.802 0.659 2.119 3.080 4.694 3.526 0.372 0.502 1.571 1.391 0.021 0.338 0.975 0.045 0.449 0.253 0.012 0.602 2.080 0.093 1270 chr3 114264017 114308735 + 0 NA intron (NR_121662, intron 3 of 6) intron (NR_121662, intron 3 of 6) 56677 NM_001164347 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 1.001 nan 0.692 0.102 0.411 0.218 0.115 0.567 0.158 0.108 0.119 0.190 0.221 0.039 0.088 0.810 0.474 4.705 4.566 0.328 nan 0.633 0.280 0.246 0.292 nan 1.025 0.211 0.230 0.744 0.304 0.242 0.305 0.065 0.097 0.324 0.559 0.508 0.471 0.051 0.093 0.013 0.055 0.115 0.190 0.037 0.027 0.106 0.123 910 chr19 373123 389846 + 0 NA Intergenic Intergenic -5471 NM_016585 51298 Hs.250002 NM_016585 ENSG00000105549 THEG CT56|THEG1 theg spermatid protein protein-coding 0.724 0.960 3.809 0.210 0.757 0.306 0.242 0.045 0.067 0.200 0.073 0.802 0.965 0.032 0.091 0.409 0.597 0.179 0.298 2.945 2.699 0.836 0.133 0.218 0.282 0.222 0.500 4.096 nan 0.872 0.786 0.352 0.410 0.531 0.791 0.897 1.562 1.775 1.077 1.353 1.123 0.040 0.099 0.242 0.802 0.569 0.085 0.302 0.200 604 chr14 69862413 69871028 + 0 NA intron (NM_018375, intron 1 of 6) AluJb|SINE|Alu 1335 NM_001252148 55334 Hs.432690 NM_018375 ENSG00000029364 SLC39A9 ZIP-9|ZIP9 solute carrier family 39 member 9 protein-coding 6.463 2.498 3.189 4.435 3.423 1.976 3.768 2.653 0.412 1.202 0.965 2.734 6.589 2.598 0.209 4.008 3.565 4.993 6.628 6.853 6.366 4.805 3.045 11.335 11.882 4.023 4.927 6.003 nan 9.903 9.393 4.220 6.569 4.726 6.406 4.739 3.730 3.582 nan 3.991 2.461 0.691 2.428 3.768 2.734 1.193 1.497 1.448 0.905 1442 chr5 175960228 175974933 + 0 NA Intergenic L2c|LINE|L2 -1932 NM_001171976 54825 Hs.4205 NM_017675 ENSG00000074276 CDHR2 PCDH24|PCLKC cadherin related family member 2 protein-coding 3.305 1.761 3.841 1.714 1.316 0.760 1.134 0.917 0.195 1.514 0.666 2.374 5.799 3.564 0.165 2.919 3.116 3.334 nan 3.522 2.883 3.531 1.404 3.761 3.610 2.386 nan 4.135 6.407 4.228 5.061 1.940 2.849 4.689 4.443 3.177 3.876 1.712 0.982 1.063 2.615 0.917 1.148 1.134 2.374 0.814 2.532 1.244 1.117 1519 chr6 129952411 129969054 + 0 NA intron (NM_033515, intron 2 of 14) intron (NM_033515, intron 2 of 14) 70638 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 0.998 1.037 0.760 0.102 0.103 0.049 0.258 1.464 0.117 0.132 0.084 0.050 0.253 0.052 0.120 0.494 0.371 0.546 1.857 0.205 0.298 6.269 2.329 0.377 0.291 0.517 0.754 0.256 0.258 0.788 0.383 0.154 0.271 2.368 3.698 0.299 0.523 0.558 0.390 0.027 0.108 0.567 0.062 0.258 0.050 0.053 0.623 0.043 0.089 634 chr15 31506185 31530273 + 0 NA intron (NM_001243538, intron 2 of 3) LTR12F|LTR|ERV1 4825 NM_001243538 283710 Hs.591097 NM_001243538 LOC283710 - uncharacterized LOC283710 protein-coding 1.132 nan nan 0.714 1.553 0.712 0.896 0.718 0.147 1.080 0.553 1.810 3.995 0.221 0.094 0.947 1.671 0.706 1.484 1.606 1.777 2.549 0.730 0.629 0.592 0.507 0.715 1.103 1.500 2.146 1.972 0.726 1.017 3.290 3.039 0.445 0.828 0.527 0.395 1.300 1.159 1.116 0.585 0.896 1.810 0.724 0.862 0.517 0.324 427 chr12 6637131 6651394 + 0 NA promoter-TSS (NM_001256799) promoter-TSS (NM_001256799) -123 NM_001256799 2597 Hs.544577 NM_002046 ENSG00000111640 GAPDH G3PD|GAPD|HEL-S-162eP glyceraldehyde-3-phosphate dehydrogenase protein-coding 3.648 nan nan 6.085 4.022 2.037 3.513 0.590 0.101 1.417 1.214 3.102 7.876 3.257 0.175 1.957 2.198 4.045 5.741 nan 6.736 9.389 2.939 3.120 3.209 2.508 3.559 3.339 4.150 3.983 5.612 1.797 2.929 3.776 3.850 3.440 nan 1.163 0.750 3.384 3.270 0.959 3.627 3.513 3.102 3.594 1.296 1.393 1.618 1753 chr9 126864412 126876430 + 0 NA Intergenic Intergenic 96532 NM_004789 9355 Hs.696425 NM_004789 ENSG00000106689 LHX2 LH2|hLhx2 LIM homeobox 2 protein-coding nan nan 0.590 1.295 0.326 0.160 0.169 0.087 0.013 0.166 0.090 0.479 nan 0.027 0.058 0.212 0.316 0.082 0.129 1.149 1.118 0.613 0.196 0.178 0.216 0.284 nan 7.294 5.342 1.143 0.800 0.151 0.212 0.158 0.205 0.269 0.291 nan 0.898 0.955 0.140 0.040 0.040 0.169 0.479 0.227 1.037 0.033 0.031 703 chr16 31190218 31193741 + 0 NA intron (NM_001170634, intron 1 of 14) CpG 548 NM_001170937 2521 Hs.46894 NM_004960 ENSG00000089280 FUS ALS6|ETM4|FUS1|HNRNPP2|POMP75|TLS FUS RNA binding protein protein-coding 7.857 4.279 6.799 9.547 8.912 4.528 5.095 3.972 0.500 2.714 0.913 7.547 22.466 5.913 0.090 7.864 8.735 7.689 10.854 10.124 10.087 14.490 10.816 16.940 18.001 6.024 7.366 13.497 20.496 13.094 15.367 8.516 12.865 10.791 11.431 8.438 7.537 5.287 2.467 6.027 4.559 1.875 4.214 5.095 7.547 1.765 3.942 3.139 2.419 280 chr10 115467914 115474374 + 0 NA intron (NM_001267058, intron 1 of 5) intron (NM_001267058, intron 1 of 5) 2040 NM_001267058 840 Hs.9216 NM_001227 ENSG00000165806 CASP7 CASP-7|CMH-1|ICE-LAP3|LICE2|MCH3 caspase 7 protein-coding 0.619 nan 0.508 0.359 0.372 0.276 0.514 0.128 0.122 0.227 0.103 0.129 0.937 0.067 0.093 3.354 3.694 11.734 9.387 0.160 0.204 3.549 1.146 2.591 2.567 0.840 1.258 2.190 3.670 0.244 0.100 3.164 4.252 0.129 0.304 0.123 0.127 0.360 0.316 0.060 0.096 0.015 0.121 0.514 0.129 0.029 0.063 3.705 0.039 1338 chr4 67947622 67952430 + 0 NA Intergenic Intergenic 337692 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA nan nan 0.518 0.297 0.293 0.267 0.481 0.063 0.133 0.170 0.144 0.129 0.571 0.044 0.087 1.821 1.295 11.856 7.751 0.261 0.266 0.209 0.113 1.166 1.171 0.808 1.055 0.536 0.591 0.337 0.107 0.363 1.401 0.077 0.063 0.205 0.344 0.377 0.339 0.023 0.111 0.050 0.481 0.129 0.041 0.253 0.025 1150 chr20 30269457 30314145 + 0 NA intron (NR_134257, intron 1 of 2) AluSx|SINE|Alu -17509 NR_131907 103021294 NR_131907 ENSG00000281376 ABALON INXS apoptotic BCL2L1-antisense long non-coding RNA ncRNA 1.997 4.252 1.785 3.876 2.963 1.598 29.204 1.820 0.326 1.814 0.978 3.565 6.998 1.096 0.117 1.992 2.738 1.536 3.872 3.909 nan 6.062 2.350 3.987 4.297 2.120 2.767 5.553 6.658 2.998 2.465 1.291 2.207 2.632 3.157 1.324 nan 1.557 0.806 5.575 3.473 1.242 2.003 29.204 3.565 1.354 1.007 1.726 1.284 1298 chr3 158478390 158495641 + 0 NA Intergenic Intergenic -32700 NM_001289406 64747 Hs.58663 NM_022736 ENSG00000118855 MFSD1 SMAP4 major facilitator superfamily domain containing 1 protein-coding nan 0.879 0.809 0.134 0.375 0.093 0.142 0.230 0.158 0.211 0.178 0.132 0.161 0.069 0.087 0.405 0.541 0.894 5.767 0.397 0.548 0.514 0.254 0.322 0.280 0.504 nan 0.687 0.618 0.595 0.343 0.272 0.447 0.032 0.047 0.326 0.510 0.578 0.511 0.061 0.070 0.010 0.105 0.142 0.132 0.050 0.035 0.109 0.106 617 chr14 95998390 96004405 + 0 NA promoter-TSS (NR_001459) promoter-TSS (NR_001459) 74 NM_016417 51218 Hs.744943 NM_016417 ENSG00000182512 GLRX5 C14orf87|FLB4739|GRX5|PR01238|PRO1238|PRSA|SIDBA3|SPAHGC glutaredoxin 5 protein-coding 7.200 2.233 nan 6.324 4.225 2.240 4.594 2.593 0.294 2.091 1.314 5.459 7.647 2.538 0.224 4.043 4.373 3.254 4.767 8.590 7.772 5.905 1.682 10.528 11.301 5.253 6.755 4.761 7.672 10.302 13.143 3.925 6.571 5.750 5.216 4.121 4.846 nan 1.871 3.419 3.699 0.984 3.432 4.594 5.459 1.257 1.761 2.770 1.127 937 chr19 18153090 18161380 + 0 NA Intergenic L2a|LINE|L2 38258 NM_001286826 27106 Hs.515249 NM_015683 ENSG00000105643 ARRDC2 CLONE24945|PP2703 arrestin domain containing 2 protein-coding 4.587 1.650 2.449 0.464 0.411 0.251 0.298 0.272 0.370 0.209 0.272 0.231 0.521 0.104 0.106 0.264 0.188 0.308 0.772 0.850 0.832 0.674 0.241 0.230 0.198 3.286 4.436 2.987 4.089 8.250 7.998 0.250 0.209 1.011 1.728 4.071 9.341 2.036 1.073 0.448 0.278 0.324 0.095 0.298 0.231 2.035 1.007 0.060 4.688 528 chr13 34115170 34122344 + 0 NA intron (NM_001243476, intron 3 of 17) intron (NM_001243476, intron 3 of 17) 132215 NM_001243476 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 2.814 2.901 2.388 3.191 3.002 1.632 1.495 2.142 0.228 1.938 1.069 5.355 6.154 1.492 0.143 8.490 8.657 5.124 4.214 9.710 10.755 8.479 6.528 5.423 5.355 5.034 5.224 7.200 10.828 5.081 4.739 4.316 7.629 3.459 4.325 7.165 7.361 2.370 1.129 4.616 2.494 0.712 1.802 1.495 5.355 0.391 2.293 3.931 1.543 504 chr12 109740283 109750577 + 0 NA intron (NM_213596, intron 2 of 9) intron (NM_213596, intron 2 of 9) 1595 NM_213596 121643 Hs.528316 NM_213596 ENSG00000139445 FOXN4 - forkhead box N4 protein-coding 2.335 1.586 nan 1.238 2.450 1.503 0.799 0.180 0.108 0.599 0.302 2.290 2.207 0.704 0.094 1.657 2.357 0.648 2.097 2.561 2.418 4.057 1.542 0.497 0.647 1.353 1.965 1.624 2.223 1.846 2.309 1.403 3.672 3.812 3.248 1.234 1.620 2.148 1.032 0.726 6.859 1.322 2.878 0.799 2.290 0.537 0.020 2.963 0.831 1617 chr7 139702198 139720453 + 0 NA intron (NM_001130966, intron 14 of 16) ALINE|LINE|RTE 52196 NR_130117 64761 Hs.12646 NM_022750 ENSG00000059378 PARP12 ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1 poly(ADP-ribose) polymerase family member 12 protein-coding nan nan nan 0.221 0.353 0.167 0.168 0.150 0.098 0.311 0.202 7.999 0.288 0.095 0.130 0.460 0.396 0.276 0.327 0.826 0.770 nan 0.277 0.571 0.585 0.148 nan 0.383 0.738 nan 0.240 0.375 0.355 0.151 0.208 0.322 0.674 1.696 nan 0.110 0.224 0.021 0.061 0.168 7.999 0.069 0.078 0.033 0.089 173 chr1 167186973 167206915 + 0 NA intron (NM_002697, intron 1 of 15) intron (NM_002697, intron 1 of 15) 6821 NR_037163 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 3.182 nan 3.849 1.494 1.778 0.988 1.919 1.126 0.275 1.748 0.835 1.724 3.431 1.177 0.120 3.326 3.427 3.019 4.143 4.274 nan 2.962 1.668 3.106 3.287 2.228 2.924 2.751 nan 3.104 2.965 2.313 4.546 2.561 3.157 5.605 9.011 1.189 0.886 1.254 3.550 0.719 1.111 1.919 1.724 0.606 0.908 2.234 3.393 39 chr1 17885975 17933633 + 0 NA intron (NM_001319837, intron 1 of 25) intron (NM_001319837, intron 1 of 25) 2756 NM_001011722 55160 Hs.443460 NM_018125 ENSG00000074964 ARHGEF10L GrinchGEF Rho guanine nucleotide exchange factor 10 like protein-coding 1.176 0.799 nan 0.087 1.695 1.052 0.403 1.220 0.186 0.693 0.245 0.327 1.270 0.137 0.110 1.436 2.652 0.394 0.826 1.520 1.422 1.708 0.671 0.719 nan 0.507 nan 2.220 2.037 nan 0.613 0.977 1.508 0.416 0.384 0.424 1.245 0.759 0.626 1.001 1.989 0.096 0.179 0.403 0.327 0.491 0.880 1.263 0.143 1720 chr9 14236695 14264430 + 0 NA intron (NM_001190737, intron 2 of 10) intron (NM_001190737, intron 2 of 10) 63483 NM_005596 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding nan nan 1.079 0.267 0.448 0.197 0.223 0.966 0.133 0.186 0.268 0.275 0.872 0.144 0.127 0.212 0.165 2.125 5.907 0.467 0.600 0.625 0.277 0.224 0.245 6.091 9.234 0.805 0.916 0.376 0.192 0.354 0.425 0.262 0.397 0.355 0.834 1.167 0.954 0.289 0.089 0.031 0.080 0.223 0.275 0.021 0.059 0.096 0.097 570 chr14 23759801 23783983 + 0 NA 5' UTR (NM_001276318, exon 1 of 5) 5' UTR (NM_001276318, exon 1 of 5) 165 NM_001276318 90673 Hs.601513 NM_001276318 ENSG00000235194 PPP1R3E - protein phosphatase 1 regulatory subunit 3E protein-coding nan 2.448 3.490 2.233 1.989 1.080 1.483 1.718 0.247 0.610 0.449 1.489 3.452 1.162 0.131 0.997 1.040 1.748 2.425 3.261 3.095 2.404 0.972 2.869 3.090 2.042 2.610 2.409 nan 3.521 3.387 1.169 1.627 1.901 1.871 7.132 11.297 1.438 0.739 2.091 2.092 0.303 1.031 1.483 1.489 0.572 1.224 0.446 4.378 1581 chr7 56172321 56184880 + 0 NA Intergenic MLT1F1|LTR|ERVL-MaLR -4277 NM_016139 51142 Hs.389996 NM_016139 ENSG00000106153 CHCHD2 C7orf17|MNRR1|NS2TP|PARK22 coiled-coil-helix-coiled-coil-helix domain containing 2 protein-coding nan 2.068 1.462 1.096 1.083 0.511 0.681 0.582 0.255 0.737 0.442 1.038 1.979 0.985 0.177 1.540 1.553 1.472 2.513 1.594 1.513 2.346 0.944 2.801 3.020 1.249 1.391 5.907 7.263 1.648 1.658 0.860 1.266 1.601 1.824 1.292 1.406 1.148 0.763 0.701 0.347 0.311 0.412 0.681 1.038 0.241 0.766 0.337 0.372 358 chr11 64098867 64128738 + 0 NA intron (NM_032251, intron 14 of 26) AluSx|SINE|Alu -4426 NR_106977 102466815 NR_106977 ENSG00000278359 MIR7155 hsa-mir-7155 microRNA 7155 ncRNA nan 1.169 1.633 1.237 0.775 0.327 0.907 0.292 0.106 0.677 0.298 0.488 1.933 0.894 0.106 2.195 3.338 0.721 1.148 1.875 1.606 2.443 0.592 1.143 1.093 1.430 2.147 1.385 2.186 1.683 1.540 0.989 1.134 1.067 1.072 0.820 1.691 1.588 0.897 1.342 0.479 0.183 0.720 0.907 0.488 0.649 1.009 0.395 0.380 152 chr1 159141322 159159133 + 0 NA intron (NM_001346510, intron 1 of 8) intron (NM_001346510, intron 1 of 8) 8678 NM_001346510 57863 Hs.365689 NM_021189 ENSG00000162706 CADM3 BIgR|IGSF4B|NECL1|Necl-1|TSLL1|synCAM3 cell adhesion molecule 3 protein-coding nan nan 1.318 0.039 0.189 0.144 0.079 0.097 0.090 0.124 0.186 0.054 0.521 0.062 0.091 0.571 0.610 0.366 0.454 0.297 nan 0.166 0.095 0.054 0.068 4.012 4.653 0.717 0.951 2.105 2.026 0.790 1.153 0.089 0.090 0.685 1.439 0.669 0.589 0.216 0.119 0.026 0.045 0.079 0.054 0.148 0.029 0.390 0.217 1735 chr9 37463912 37468524 + 0 NA promoter-TSS (NM_014872) promoter-TSS (NM_014872) -811 NM_014872 9925 Hs.161276 NM_014872 ENSG00000168795 ZBTB5 - zinc finger and BTB domain containing 5 protein-coding 4.976 9.519 4.882 5.577 4.299 2.048 4.434 2.880 0.527 2.063 1.171 4.800 12.003 5.813 0.225 3.401 3.604 7.597 9.262 7.046 4.622 12.072 5.385 10.399 9.792 2.725 3.567 5.847 10.174 5.421 5.761 2.961 5.474 7.794 8.292 5.066 5.529 5.102 2.839 5.045 4.139 1.678 3.610 4.434 4.800 0.693 1.951 2.829 1.302 1232 chr22 39847867 39871901 + 0 NA intron (NM_002409, intron 1 of 1) AluJr|SINE|Alu 6559 NM_002409 4248 Hs.276808 NM_002409 ENSG00000128268 MGAT3 GNT-III|GNT3 mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase protein-coding 1.342 nan 0.618 0.333 0.624 0.258 0.788 0.075 0.095 0.130 0.068 0.930 0.708 0.939 0.110 2.065 2.921 0.350 0.401 1.312 1.227 0.609 0.287 0.197 0.226 0.608 nan 0.768 1.204 nan 0.910 0.653 1.240 0.261 0.194 0.803 1.615 0.663 0.432 1.766 0.885 0.035 0.204 0.788 0.930 0.662 0.161 0.715 0.211 981 chr19 48891695 48905844 + 0 NA intron (NM_000836, intron 1 of 12) intron (NM_000836, intron 1 of 12) 637 NM_000836 2906 Hs.445015 NM_000836 ENSG00000105464 GRIN2D EB11|EIEE46|GluN2D|NMDAR2D|NR2D glutamate ionotropic receptor NMDA type subunit 2D protein-coding 2.487 1.455 2.004 1.170 2.975 1.872 1.949 0.645 0.212 0.539 0.260 1.576 2.828 2.773 0.108 1.458 2.177 1.824 2.836 3.175 3.109 9.159 3.609 4.818 5.391 2.822 3.794 2.819 3.983 3.759 2.741 1.704 2.084 1.699 1.986 2.581 4.461 2.440 1.354 0.912 3.002 0.626 0.636 1.949 1.576 1.234 1.340 0.641 1.177 6 chr1 2395645 2415617 + 0 NA intron (NM_001303012, intron 1 of 21) intron (NM_001303012, intron 1 of 21) -2123 NM_001303013 9651 Hs.170156 NM_014638 ENSG00000149527 PLCH2 PLC-L4|PLC-eta2|PLCL4|PLCeta2 phospholipase C eta 2 protein-coding 2.257 nan 2.531 0.207 0.319 0.178 0.364 0.065 0.032 0.117 0.108 0.054 1.686 0.070 0.065 0.750 1.646 0.097 0.159 0.541 0.582 0.598 0.152 0.275 0.260 1.047 nan nan 0.545 nan 3.283 0.651 0.604 0.259 0.283 1.640 4.407 0.802 0.565 5.443 0.090 0.047 0.376 0.364 0.054 0.674 0.148 0.159 1.148 764 chr17 35833262 35852770 + 0 NA Intergenic Intergenic -6935 NM_007026 11072 Hs.91448 NM_007026 ENSG00000276023 DUSP14 MKP-L|MKP6 dual specificity phosphatase 14 protein-coding nan 1.787 1.148 0.328 1.371 0.693 1.024 1.473 0.205 0.763 0.407 0.884 1.583 0.509 0.081 1.973 2.506 1.409 3.515 nan 1.279 2.024 0.701 1.517 1.486 1.275 1.719 1.334 2.412 nan 3.657 0.803 1.751 1.072 0.980 1.215 2.687 0.944 0.694 0.570 1.467 0.348 1.174 1.024 0.884 0.360 0.676 1.051 0.531 888 chr18 53441770 53453191 + 0 NA Intergenic CpG 139950 NR_110755 101927273 Hs.434335 NR_110755 ENSG00000260930 LINC01416 - long intergenic non-protein coding RNA 1416 ncRNA nan 0.755 0.803 0.306 0.299 0.295 0.887 1.160 0.070 0.669 0.545 0.900 0.674 3.195 0.116 0.689 0.461 0.877 0.604 1.069 0.913 3.757 2.010 1.262 1.446 2.310 2.584 0.618 0.766 0.972 0.861 0.531 0.777 3.133 2.939 0.298 0.474 6.467 3.764 0.117 0.343 0.641 0.237 0.887 0.900 0.143 0.500 0.219 0.171 1281 chr3 127283351 127294901 + 0 NA Intergenic MLT1B|LTR|ERVL-MaLR 5048 NR_106883 102466199 NR_106883 ENSG00000275067 MIR6825 hsa-mir-6825 microRNA 6825 ncRNA 1.156 nan 0.971 0.330 0.367 0.263 0.772 0.258 0.124 0.224 0.227 0.176 2.216 0.065 0.061 0.332 0.356 0.246 0.269 1.029 0.867 1.763 0.374 0.470 0.441 0.681 nan 0.260 0.339 1.182 0.990 0.458 0.605 0.273 0.465 0.534 0.781 1.001 0.812 5.285 0.986 0.050 0.298 0.772 0.176 0.293 0.059 0.185 0.148 805 chr17 59429275 59445882 + 0 NA intron (NM_001330413, intron 23 of 25) AluSx|SINE|Alu 7487 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 1.135 0.836 0.835 0.238 0.467 0.241 0.771 0.307 0.194 0.197 0.158 0.223 0.344 0.052 0.159 0.461 0.409 0.277 0.559 0.454 0.457 4.572 1.292 nan 0.469 0.324 0.539 nan nan 1.218 0.974 0.309 0.346 2.637 3.416 0.584 1.133 0.807 0.488 0.054 0.795 0.613 0.904 0.771 0.223 0.345 0.117 0.107 0.195 757 chr17 27884344 27896645 + 0 NA intron (NM_198147, intron 1 of 1) AluJb|SINE|Alu 3548 NM_198147 116236 Hs.106510 NM_198147 ENSG00000168792 ABHD15 - abhydrolase domain containing 15 protein-coding nan nan nan 0.509 1.995 1.234 0.672 0.514 0.211 0.294 0.178 1.243 1.840 2.593 0.194 0.837 1.440 1.214 1.652 1.385 0.933 2.272 0.786 1.586 1.746 1.190 1.912 1.716 2.076 6.046 6.034 1.163 2.497 0.970 0.782 2.257 nan 0.576 0.567 0.937 0.252 0.318 0.716 0.672 1.243 0.512 0.840 0.845 4.141 105 chr1 87791685 87805113 + 0 NA intron (NM_006769, intron 2 of 4) intron (NM_006769, intron 2 of 4) 4248 NM_006769 8543 Hs.436792 NM_006769 ENSG00000143013 LMO4 - LIM domain only 4 protein-coding 4.119 nan nan 3.914 4.796 2.751 1.995 1.785 0.215 1.563 0.724 2.764 8.790 0.863 0.144 2.835 2.620 3.704 4.582 3.721 2.690 2.143 0.749 6.611 6.482 5.073 6.502 7.039 8.678 1.618 1.590 2.170 3.942 4.362 3.798 2.560 3.491 2.535 1.385 2.229 1.087 1.268 3.755 1.995 2.764 0.333 1.258 1.578 2.105 1307 chr3 181402806 181486221 + 0 NA intron (NR_004053, intron 4 of 4) CpG 14801 NM_003106 6657 Hs.518438 NM_003106 ENSG00000181449 SOX2 ANOP3|MCOPS3 SRY-box 2 protein-coding 1.310 5.472 2.103 1.938 2.268 1.156 0.693 0.123 0.156 1.275 0.712 0.275 1.633 5.177 0.168 0.345 0.368 0.662 0.940 0.832 0.812 8.705 3.739 0.119 0.127 2.748 3.347 1.151 1.610 0.803 0.387 0.177 0.252 5.169 4.303 0.141 0.214 1.613 0.936 0.078 0.242 1.392 1.732 0.693 0.275 0.076 0.293 0.045 0.043 763 chr17 34979836 34987683 + 0 NA Intergenic Intergenic 25734 NM_024864 79922 Hs.194864 NM_024864 ENSG00000278619 MRM1 - mitochondrial rRNA methyltransferase 1 protein-coding nan 1.758 1.264 0.358 8.402 4.411 0.621 0.077 0.061 1.964 1.097 4.247 1.030 0.069 0.086 0.490 0.573 0.171 0.333 nan 5.357 3.132 2.256 0.354 0.531 0.259 0.542 2.852 4.310 nan 0.694 0.531 0.697 2.332 1.091 0.331 0.605 2.531 1.779 2.217 2.798 0.839 0.040 0.621 4.247 0.714 3.259 0.263 0.144 1284 chr3 128897579 128905282 + 0 NA intron (NM_001127192, intron 1 of 4) intron (NM_001127192, intron 1 of 4) 1380 NM_001127196 7555 Hs.518249 NM_003418 ENSG00000169714 CNBP CNBP1|DM2|PROMM|RNF163|ZCCHC22|ZNF9 CCHC-type zinc finger nucleic acid binding protein protein-coding 7.094 nan 4.231 3.412 6.134 3.867 3.609 5.040 0.754 3.678 2.080 3.814 4.096 2.124 0.141 6.528 5.030 6.150 9.117 6.962 7.108 10.714 6.118 12.598 13.463 4.624 nan 4.590 8.367 14.784 16.357 5.194 8.233 4.062 4.863 10.948 7.969 3.314 1.800 2.345 1.955 0.717 2.132 3.609 3.814 1.307 1.320 1.570 2.816 1197 chr21 34660977 34698460 + 0 NA Intergenic LTR47B|LTR|ERVL -17496 NM_000629 3454 Hs.529400 NM_000629 ENSG00000142166 IFNAR1 AVP|IFN-alpha-REC|IFNAR|IFNBR|IFRC interferon alpha and beta receptor subunit 1 protein-coding 1.386 1.029 1.561 0.969 0.815 0.436 0.547 0.339 0.064 0.373 0.218 0.902 2.305 0.353 0.085 0.931 1.046 0.973 1.286 1.977 1.644 1.136 0.427 1.460 1.479 0.687 1.065 3.559 3.045 1.722 1.491 0.591 0.914 1.071 1.038 0.886 1.245 nan 1.206 0.559 0.925 0.221 0.346 0.547 0.902 0.332 0.895 0.316 0.474 269 chr10 34916282 34929621 + 0 NA intron (NM_001184785, intron 2 of 24) intron (NM_001184785, intron 2 of 24) 181302 NM_001184788 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 0.742 0.858 0.900 0.086 2.170 1.125 0.362 0.967 0.243 0.498 0.185 0.799 0.412 0.164 0.087 1.088 0.740 2.623 nan 1.241 1.101 1.983 0.677 9.544 9.525 0.420 0.734 0.578 0.937 0.223 0.114 0.673 1.152 0.246 0.186 0.255 0.567 0.699 0.485 0.034 0.094 0.065 0.113 0.362 0.799 0.102 0.167 0.814 0.171 45 chr1 23849870 23859199 + 0 NA non-coding (NR_110799, exon 3 of 3) non-coding (NR_110799, exon 3 of 3) 3178 NM_004091 1870 Hs.194333 NM_004091 ENSG00000007968 E2F2 E2F-2 E2F transcription factor 2 protein-coding 4.742 2.867 nan 6.536 3.385 1.858 2.017 0.769 0.103 3.195 1.135 3.458 11.450 2.680 0.123 3.416 3.081 1.956 3.623 14.043 12.059 5.081 1.696 4.026 4.600 4.540 5.611 6.626 8.636 5.270 5.201 1.448 2.013 4.548 5.170 3.742 5.392 3.218 1.635 8.036 5.953 1.325 3.121 2.017 3.458 1.560 1.742 0.444 1.368 1705 chr9 1791878 1799111 + 0 NA Intergenic Intergenic -219725 NM_003070 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 0.882 1.669 0.735 0.073 0.349 0.111 0.316 0.124 0.068 0.088 0.080 0.116 0.273 0.015 0.109 2.120 1.135 10.846 0.914 0.268 0.538 0.186 0.091 6.178 6.101 2.694 3.826 0.154 0.176 3.712 3.327 0.264 1.594 0.067 0.056 0.043 nan 0.705 0.895 0.036 3.595 0.316 0.116 0.174 0.028 0.408 0.018 450 chr12 12670577 12677597 + 0 NA 5' UTR (NM_030640, exon 2 of 7) 5' UTR (NM_030640, exon 2 of 7) 41361 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 1.110 1.177 1.089 2.221 1.479 0.549 0.308 0.097 0.024 1.912 0.529 2.109 0.494 0.134 0.091 0.366 0.222 0.330 0.794 nan 1.236 11.051 5.558 0.756 0.671 0.856 1.218 1.339 0.922 0.338 0.161 0.256 0.275 1.130 2.054 0.388 0.717 2.921 1.202 0.071 0.317 0.152 0.067 0.308 2.109 0.014 0.159 0.070 0.282 19 chr1 7005386 7026286 + 0 NA intron (NM_015215, intron 3 of 22) intron (NM_015215, intron 3 of 22) 170452 NR_038934 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 1.144 nan 0.794 0.639 0.507 0.213 0.294 0.133 0.085 0.121 0.095 0.224 2.471 0.161 0.112 0.229 0.190 0.270 0.351 0.972 0.883 0.264 0.072 0.289 0.272 0.267 nan nan 3.447 nan 0.401 0.918 1.017 0.073 0.089 2.021 6.319 0.839 0.589 1.759 2.328 0.018 0.174 0.294 0.224 0.149 0.286 0.352 0.533 1059 chr2 121939148 121947551 + 0 NA Intergenic Intergenic 99429 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 0.889 nan nan 3.011 0.328 0.343 0.809 0.045 0.037 1.276 0.260 0.935 1.636 0.103 0.053 1.174 1.546 0.244 0.382 0.473 0.688 12.054 4.487 3.903 4.425 0.188 0.332 5.370 6.492 0.360 0.265 0.161 0.406 1.293 1.161 0.185 0.335 1.387 0.885 0.658 0.381 0.157 0.113 0.809 0.935 0.206 0.212 0.030 0.073 458 chr12 27862472 27865235 + 0 NA exon (NM_001190864, exon 1 of 7) exon (NM_001190864, exon 1 of 7) 147 NM_001190864 60488 Hs.714076 NM_021821 ENSG00000061794 MRPS35 HDCMD11P|MDS023|MRP-S28|MRPS28 mitochondrial ribosomal protein S35 protein-coding nan nan nan 7.951 2.108 1.620 2.917 0.977 0.077 2.964 1.246 4.460 8.642 5.684 0.204 3.398 3.729 5.916 9.242 7.490 6.950 12.161 3.799 19.403 19.676 4.448 4.889 4.688 8.000 6.149 6.185 2.407 5.041 2.786 2.432 6.132 5.818 4.462 2.399 1.472 1.599 0.379 1.992 2.917 4.460 10.665 4.173 1.391 1.840 486 chr12 58202652 58213317 + 0 NA exon (NM_006576, exon 2 of 19) exon (NM_006576, exon 2 of 19) 1868 NM_006576 10677 Hs.584854 NM_006576 ENSG00000135407 AVIL ADVIL|DOC6|p92 advillin protein-coding nan 0.718 1.069 1.664 0.772 0.389 0.209 0.189 0.107 0.721 0.351 1.738 0.812 0.031 0.063 nan 4.341 1.389 0.682 3.473 nan 1.888 0.489 6.470 6.557 0.520 nan 9.597 nan 0.671 0.683 2.803 3.934 0.220 0.265 0.424 0.675 3.135 1.663 1.137 0.444 0.054 0.110 0.209 1.738 0.064 0.759 2.834 0.173 949 chr19 36133305 36140502 + 0 NA Intergenic AluJr|SINE|Alu -2222 NM_001863 1340 Hs.431668 NM_001863 ENSG00000126267 COX6B1 COX6B|COXG|COXVIb1 cytochrome c oxidase subunit 6B1 protein-coding 3.486 2.644 3.043 5.325 2.323 1.351 1.525 1.089 0.178 0.992 0.521 1.561 18.474 2.771 0.106 2.143 2.688 2.891 3.797 3.676 2.938 4.148 1.760 3.193 3.665 2.343 2.897 4.325 5.514 nan 3.400 2.828 4.304 2.554 2.492 2.248 3.742 2.211 1.027 1.991 4.195 0.437 1.010 1.525 1.561 0.674 2.031 2.134 1.223 1319 chr3 190651516 190661400 + 0 NA Intergenic L1MD2|LINE|L1 60739 NR_024343 100170222 Hs.717310 NR_024343 SNAR-I snaR-3 small ILF3/NF90-associated RNA I snRNA 3.224 1.149 0.990 0.213 0.302 0.113 0.079 0.122 0.116 0.096 0.158 0.048 nan 0.131 0.111 1.033 1.465 1.359 0.386 0.213 0.378 0.580 0.197 0.472 0.327 0.211 0.327 0.377 0.509 14.369 13.542 0.666 1.055 0.301 0.337 0.973 2.339 0.238 0.349 0.028 0.117 0.223 0.024 0.079 0.048 0.020 0.051 0.459 0.688 325 chr11 33911452 33921026 + 0 NA Intergenic Intergenic -2403 NM_005574 4005 Hs.34560 NM_005574 ENSG00000135363 LMO2 RBTN2|RBTNL1|RHOM2|TTG2 LIM domain only 2 protein-coding 1.542 2.769 nan 1.489 4.275 2.096 2.738 0.340 0.083 1.884 0.536 0.625 5.196 0.120 0.078 0.593 0.721 0.252 0.393 1.756 1.829 0.416 0.185 0.343 0.261 2.387 3.308 2.153 2.390 1.453 1.126 1.293 1.965 1.986 1.382 0.983 nan 3.055 1.672 7.033 2.798 0.366 1.799 2.738 0.625 1.980 0.275 0.972 0.506 1084 chr2 177035486 177044060 + 0 NA non-coding (NR_110464, exon 4 of 4) non-coding (NR_110464, exon 4 of 4) 3084 NR_110463 401022 Hs.98661 NR_033979 ENSG00000224189 HAGLR HOXD-AS1|Mdgt HOXD antisense growth-associated long non-coding RNA ncRNA 1.967 1.452 0.874 1.348 2.145 1.016 3.770 0.053 0.131 1.517 0.742 5.465 3.929 0.199 0.076 4.755 5.969 0.588 1.101 1.244 1.218 2.637 1.098 3.509 3.619 0.806 1.317 2.426 3.139 7.159 10.427 3.331 6.497 2.160 1.453 0.315 0.575 1.376 0.571 3.572 1.120 0.356 1.943 3.770 5.465 0.445 0.014 3.372 0.044 1051 chr2 111877340 111881893 + 0 NA intron (NM_207003, intron 1 of 4) CpG-15379 1125 NM_207002 10018 Hs.469658 NM_006538 ENSG00000153094 BCL2L11 BAM|BIM|BOD BCL2 like 11 protein-coding 6.933 nan 6.638 6.826 3.402 2.354 3.429 2.328 0.177 2.564 1.718 6.831 16.582 1.998 0.058 6.323 7.508 7.530 11.378 10.612 nan 9.080 3.602 12.050 11.937 1.545 2.701 9.781 15.332 4.095 6.368 3.813 7.950 2.940 2.793 3.937 3.402 2.340 1.513 4.548 5.027 0.920 2.766 3.429 6.831 1.362 3.115 2.717 1.111 1221 chr22 29187491 29198817 + 0 NA exon (NM_005080, exon 3 of 5) exon (NM_005080, exon 3 of 5) 3406 NM_001079539 7494 Hs.437638 NM_005080 ENSG00000100219 XBP1 TREB-5|TREB5|XBP-1|XBP2 X-box binding protein 1 protein-coding nan 1.945 2.369 1.949 4.638 2.483 1.396 2.508 0.257 1.521 0.798 2.099 3.624 2.048 0.109 1.621 2.115 2.069 nan 1.819 1.430 4.419 2.590 10.402 10.545 3.003 nan 5.526 7.266 1.896 2.592 2.287 3.292 5.377 6.847 4.203 nan 4.043 1.931 1.459 1.792 0.792 1.195 1.396 2.099 0.506 2.860 0.810 0.993 1231 chr22 38567401 38600236 + 0 NA Intergenic L2a|LINE|L2 -5982 NM_001199562 8398 Hs.170479 NM_003560 ENSG00000184381 PLA2G6 CaI-PLA2|GVI|INAD1|IPLA2-VIA|NBIA2|NBIA2A|NBIA2B|PARK14|PLA2|PNPLA9|iPLA2|iPLA2beta phospholipase A2 group VI protein-coding 1.739 nan 1.321 1.363 1.967 1.012 1.066 1.019 0.210 0.566 0.302 2.158 1.942 1.172 0.126 3.718 4.202 2.477 3.120 1.809 1.703 1.770 0.785 2.290 2.478 0.892 nan 3.061 3.799 nan 1.096 0.833 0.902 1.572 2.420 0.926 1.435 1.672 0.879 1.232 0.897 0.337 0.282 1.066 2.158 0.445 2.258 0.458 0.481 265 chr10 25000604 25013664 + 0 NA intron (NM_020824, intron 2 of 25) intron (NM_020824, intron 2 of 25) 5463 NM_020824 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 1.853 1.983 2.867 0.881 1.853 0.967 0.744 4.394 0.535 0.577 0.342 2.143 3.559 1.501 0.097 2.913 4.518 1.869 2.643 2.092 1.799 3.714 2.064 2.002 1.836 2.826 3.300 1.083 1.804 2.019 2.185 1.521 3.978 0.990 0.941 3.709 5.682 0.967 0.593 1.042 1.332 0.138 4.070 0.744 2.143 0.268 0.862 1.564 3.342 779 chr17 38458979 38508014 + 0 NA intron (NM_001145301, intron 1 of 8) intron (NM_001145301, intron 1 of 8) 9023 NM_001145302 5914 Hs.654583 NM_000964 ENSG00000131759 RARA NR1B1|RAR retinoic acid receptor alpha protein-coding nan 1.636 0.849 0.774 1.780 0.964 1.204 1.762 0.350 0.690 0.565 1.455 2.630 0.595 0.081 1.427 2.520 0.992 1.972 nan 2.226 1.102 0.463 1.832 1.921 1.293 1.803 2.722 3.261 nan 1.070 0.585 0.824 0.535 0.544 1.178 2.289 1.551 0.905 1.092 0.586 0.174 1.610 1.204 1.455 0.510 1.764 0.218 0.567 753 chr17 26644068 26653857 + 0 NA intron (NM_014573, intron 1 of 2) intron (NM_014573, intron 1 of 2) 2841 NM_014573 27346 Hs.199695 NM_014573 ENSG00000109084 TMEM97 MAC30 transmembrane protein 97 protein-coding nan nan nan 1.487 2.013 1.306 1.559 0.834 0.147 0.720 0.565 2.374 3.005 0.937 0.094 2.620 2.867 1.803 2.692 3.793 3.410 2.940 1.080 2.790 2.792 2.714 3.252 4.971 6.697 13.511 14.409 2.926 5.521 4.668 5.405 3.892 6.085 2.449 1.253 1.273 1.211 1.471 1.574 1.559 2.374 1.620 0.653 1.760 2.851 1089 chr2 183898684 183904180 + 0 NA intron (NM_205842, intron 1 of 31) intron (NM_205842, intron 1 of 31) 2154 NM_205842 10787 Hs.603732 NM_013436 ENSG00000061676 NCKAP1 HEM2|NAP1|NAP125|p125Nap1 NCK associated protein 1 protein-coding 3.711 2.998 3.765 2.674 3.419 1.753 2.821 2.192 0.175 1.537 0.842 3.269 5.773 2.482 0.076 2.427 3.019 4.542 6.266 4.356 4.053 2.968 1.524 13.440 13.117 nan 3.903 10.146 15.537 4.525 4.881 2.196 5.072 1.819 1.825 5.931 5.351 1.604 0.708 1.500 1.413 0.363 1.665 2.821 3.269 1.065 1.458 1.040 1.352 191 chr1 197236692 197257631 + 0 NA intron (NR_047564, intron 1 of 11) MLT1I|LTR|ERVL-MaLR 9827 NR_047563 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs 1, cell polarity complex component protein-coding 1.156 nan 1.362 0.412 1.444 0.708 0.381 0.199 0.153 1.415 0.847 0.276 0.892 0.088 0.130 0.428 0.431 0.348 0.513 1.715 1.678 0.190 0.098 0.362 0.406 1.812 nan 0.501 0.592 1.104 0.810 0.247 0.517 2.897 3.474 1.904 3.605 1.332 0.930 0.026 0.354 0.344 0.046 0.381 0.276 0.018 0.355 0.468 0.797 1574 chr7 37039064 37051866 + 0 NA intron (NR_104120, intron 2 of 2) intron (NR_104120, intron 2 of 2) 8064 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 2.467 0.902 2.487 0.158 0.230 0.200 0.437 0.113 0.161 0.147 0.247 0.810 0.390 0.034 0.153 6.361 5.850 3.556 2.111 0.560 nan 0.705 0.289 3.534 3.437 3.152 nan nan nan 1.843 1.812 2.345 3.856 0.420 0.299 0.273 nan 0.795 0.652 0.022 0.172 0.044 0.354 0.437 0.810 0.880 0.294 2.409 0.193 1500 chr6 51082588 51087552 + 0 NA Intergenic Intergenic 298631 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 0.848 0.849 nan 0.175 0.387 0.227 0.077 0.091 0.096 0.062 0.113 0.749 0.497 0.033 0.090 2.180 1.970 9.790 8.384 0.320 0.426 0.127 0.108 2.363 2.414 0.138 0.323 0.216 0.257 0.109 0.048 0.367 0.913 0.344 0.445 0.348 0.405 0.183 0.292 0.044 0.035 0.076 0.109 0.077 0.749 0.038 0.020 0.371 0.150 236 chr1 244995724 245007596 + 0 NA intron (NM_001312872, intron 2 of 4) L2a|LINE|L2 2882 NR_132419 116228 Hs.411490 NM_198076 ENSG00000203667 COX20 FAM36A COX20, cytochrome c oxidase assembly factor protein-coding nan 5.234 nan 6.796 8.016 4.585 4.732 3.153 0.710 3.555 1.780 5.295 8.152 3.847 0.202 6.478 6.489 8.670 10.865 8.935 7.546 8.438 5.619 17.080 18.613 3.140 3.682 5.600 8.577 5.211 6.349 3.775 4.275 7.026 7.125 6.046 5.116 2.636 1.457 4.319 2.729 1.267 2.362 4.732 5.295 1.020 2.087 1.911 1.960 526 chr13 27535683 27547049 + 0 NA Intergenic Intergenic -158304 NR_046547 100874070 Hs.524923 NR_046547 USP12-AS1 - USP12 antisense RNA 1 ncRNA 1.279 0.610 3.440 1.825 0.408 0.218 0.225 0.086 0.057 0.248 0.131 1.628 0.678 0.048 0.068 0.890 1.663 0.362 nan 4.777 4.622 2.165 0.423 0.219 0.295 0.830 1.143 1.954 2.301 8.056 10.061 1.059 1.205 0.128 0.128 0.239 0.435 1.914 0.933 0.147 0.552 0.803 0.225 1.628 0.662 2.619 0.898 0.087 1765 chr9 133604330 133609592 + 0 NA intron (NM_007313, intron 1 of 10) L1ME3A|LINE|L1 17693 NM_007313 25 Hs.431048 NM_005157 ENSG00000097007 ABL1 ABL|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl ABL proto-oncogene 1, non-receptor tyrosine kinase protein-coding nan 0.978 4.913 7.048 7.377 3.688 0.258 0.250 0.183 3.577 1.779 4.153 0.690 0.041 0.109 0.307 0.555 0.512 0.793 1.580 1.843 8.391 3.329 0.173 0.274 0.535 0.724 4.757 6.003 1.181 0.958 0.182 0.304 7.131 10.251 0.437 0.907 4.175 1.484 0.074 0.288 2.706 0.660 0.258 4.153 0.239 2.965 0.089 0.258 755 chr17 27275278 27281249 + 0 NA 5' UTR (NM_001033561, exon 1 of 15) 5' UTR (NM_001033561, exon 1 of 15) 245 NM_001033561 57649 Hs.444173 NM_020889 ENSG00000109118 PHF12 PF1 PHD finger protein 12 protein-coding nan nan nan 3.153 8.360 4.398 4.407 3.539 0.242 1.834 1.021 6.149 15.383 8.357 0.244 7.510 6.804 6.690 9.489 7.864 7.196 6.772 3.081 10.187 10.830 4.605 5.367 9.144 14.165 13.666 11.888 6.113 8.838 3.539 4.579 5.101 7.250 2.551 1.178 6.861 6.584 1.152 4.243 4.407 6.149 2.768 2.856 5.139 3.889 1183 chr20 61869953 61878797 + 0 NA intron (NM_152864, intron 5 of 6) intron (NM_152864, intron 5 of 6) 4244 NR_036163 100423014 NR_036163 ENSG00000266463 MIR3196 mir-3196 microRNA 3196 ncRNA 0.704 1.387 1.069 1.231 0.410 0.150 0.141 0.113 0.054 0.075 0.049 0.202 1.030 0.098 0.073 0.674 nan 0.108 0.108 1.003 0.755 1.271 0.283 0.533 0.710 0.134 0.279 0.388 0.248 0.655 0.428 0.358 0.493 0.120 0.167 0.168 0.208 1.196 0.733 7.413 0.287 0.043 0.045 0.141 0.202 0.055 0.497 0.044 0.014 1066 chr2 144183708 144200373 + 0 NA intron (NM_018460, intron 6 of 13) intron (NM_018460, intron 6 of 13) 305141 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 0.883 nan 1.366 0.095 0.246 0.114 0.191 1.061 0.122 0.064 0.151 0.108 0.317 0.026 0.076 0.340 0.161 0.297 0.822 0.224 0.278 0.215 0.068 0.232 0.215 3.591 3.853 0.310 0.271 0.385 0.168 0.078 0.170 0.040 0.061 0.356 0.683 0.318 0.352 0.029 0.016 0.017 0.137 0.191 0.108 0.024 0.018 0.065 0.106 1713 chr9 3489693 3532568 + 0 NA intron (NM_134428, intron 1 of 17) intron (NM_134428, intron 1 of 17) 14871 NM_134428 5991 Hs.136829 NM_002919 ENSG00000080298 RFX3 - regulatory factor X3 protein-coding 1.719 3.461 2.370 1.197 3.208 1.634 1.631 1.031 0.108 2.388 1.281 2.055 2.960 1.576 0.109 1.958 1.719 5.347 7.224 2.945 2.906 5.643 3.280 3.626 3.787 5.271 6.041 2.376 4.056 1.681 1.598 1.308 2.121 6.207 6.868 1.363 nan 2.672 1.692 1.573 1.297 1.326 1.249 1.631 2.055 0.371 0.883 1.060 0.202 278 chr10 104168082 104183017 + 0 NA intron (NM_002779, intron 3 of 16) intron (NM_002779, intron 3 of 16) 3352 NM_002779 5662 Hs.154658 NM_002779 ENSG00000059915 PSD EFA6|EFA6A|PSD1|TYL pleckstrin and Sec7 domain containing protein-coding nan nan 1.410 1.966 3.409 1.767 1.720 0.281 0.108 1.300 0.615 3.655 4.464 0.701 0.079 3.098 4.199 0.911 1.303 6.371 5.209 5.037 2.247 0.794 0.753 1.414 nan 5.699 7.574 1.912 2.173 1.112 1.815 2.071 1.671 2.778 nan 1.569 0.951 1.569 2.347 0.627 1.310 1.720 3.655 0.786 1.859 1.055 1.734 1312 chr3 184078553 184090307 + 0 NA intron (NM_001278715, intron 3 of 3) intron (NM_001278715, intron 3 of 3) 3659 NM_001278715 5437 Hs.432574 NM_006232 ENSG00000163882 POLR2H RPABC3|RPB17|RPB8 RNA polymerase II subunit H protein-coding 4.030 3.433 2.242 2.574 4.613 2.407 1.534 1.823 0.373 2.355 1.314 1.877 8.760 1.769 0.110 2.062 2.605 2.630 3.669 4.066 3.363 6.632 3.026 3.921 4.056 2.536 3.468 4.276 5.695 4.107 4.719 1.161 2.521 2.599 2.533 3.043 3.807 1.865 1.032 1.695 1.861 0.623 2.050 1.534 1.877 0.719 1.594 0.913 1.797 1450 chr6 5604677 5616933 + 0 NA intron (NM_006567, intron 5 of 6) MER2|DNA|TcMar-Tigger 84700 NR_110842 101927950 Hs.571136 NR_110842 ENSG00000270174 LOC101927950 - uncharacterized LOC101927950 ncRNA 1.061 0.743 1.028 0.558 0.386 0.274 0.189 0.157 0.118 0.399 0.287 0.329 0.159 0.071 0.080 0.382 0.324 0.203 0.269 0.414 0.467 3.334 0.802 0.269 0.224 0.489 0.661 1.122 0.925 0.478 0.156 0.121 0.210 1.040 1.215 0.335 0.996 1.756 0.993 0.018 0.094 0.156 0.051 0.189 0.329 0.072 2.988 0.024 0.107 841 chr17 80784644 80852436 + 0 NA intron (NM_005993, intron 13 of 38) intron (NM_005993, intron 13 of 38) -20609 NM_024702 79755 Hs.464391 NM_024702 ENSG00000141579 ZNF750 ZFP750 zinc finger protein 750 protein-coding 1.015 1.115 1.278 0.592 0.556 0.248 0.819 0.205 0.136 0.533 0.271 2.151 6.255 0.113 0.104 0.962 nan 0.604 1.274 nan 1.422 1.521 0.377 0.565 0.558 0.488 0.789 3.267 4.039 0.231 0.246 0.684 1.041 0.769 0.786 0.367 0.553 1.374 0.831 1.971 8.277 0.138 0.587 0.819 2.151 0.279 0.691 0.433 0.130 1299 chr3 169489244 169492560 + 0 NA promoter-TSS (NM_001185118) promoter-TSS (NM_001185118) 49 NM_001185118 55892 Hs.507025 NM_018657 ENSG00000085274 MYNN OSZF|SBBIZ1|ZBTB31|ZNF902 myoneurin protein-coding 9.719 6.383 6.011 10.939 10.427 5.703 5.510 5.734 0.606 6.464 2.950 6.168 12.639 3.614 0.145 5.101 8.726 8.711 12.161 13.358 10.823 19.737 13.856 20.539 21.833 8.717 9.095 nan 16.781 nan 21.974 4.720 8.989 13.210 15.826 10.402 9.366 6.418 3.473 5.778 6.291 1.643 4.224 5.510 6.168 1.641 3.123 3.578 3.870 1557 chr7 19134467 19157736 + 0 NA Intergenic CpG 11194 NM_000474 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding nan 0.862 nan 0.241 0.178 0.108 0.599 5.129 0.451 0.290 0.309 0.080 1.786 1.816 0.159 nan 0.202 3.627 3.923 0.941 0.957 1.145 0.330 2.205 2.308 0.963 1.412 0.370 0.395 1.000 0.897 0.076 0.102 3.056 2.264 0.144 0.372 0.738 0.666 0.019 0.181 0.688 0.030 0.599 0.080 0.048 0.381 0.017 0.079 1336 chr4 54871989 54885626 + 0 NA intron (NM_012110, intron 5 of 5) intron (NM_012110, intron 5 of 5) -25358 NR_027153 402176 Hs.452943 NM_001011538 RPL21P44 RPL21_17_477 ribosomal protein L21 pseudogene 44 pseudo nan 0.607 0.484 0.242 0.413 0.224 0.797 0.188 0.023 1.347 0.803 0.333 0.208 0.073 0.051 0.457 0.445 0.717 1.047 0.219 0.359 8.579 4.194 0.368 0.272 0.495 0.757 1.746 1.745 0.413 0.154 0.335 0.436 0.911 0.586 0.177 0.402 1.886 1.123 0.020 0.244 0.116 0.116 0.797 0.333 0.007 0.278 0.052 0.036 1600 chr7 106584249 106607437 + 0 NA Intergenic MLT1A0|LTR|ERVL-MaLR -89335 NM_002736 5577 Hs.433068 NM_002736 ENSG00000005249 PRKAR2B PRKAR2|RII-BETA protein kinase cAMP-dependent type II regulatory subunit beta protein-coding nan 0.576 0.649 0.114 0.296 0.117 0.520 0.110 0.069 0.081 0.150 0.133 0.301 0.066 0.134 0.539 0.303 0.257 0.337 0.416 0.442 3.452 1.184 0.216 0.198 0.373 0.547 0.143 0.224 0.325 0.184 0.233 0.300 0.080 0.076 0.173 nan 1.054 0.901 0.041 0.168 0.004 0.075 0.520 0.133 0.013 0.045 0.034 0.032 838 chr17 79847903 79857775 + 0 NA intron (NM_001289419, intron 3 of 3) AluSp|SINE|Alu 3036 NM_001002249 51529 Hs.534456 NM_016476 ENSG00000141552 ANAPC11 APC11|Apc11p|HSPC214 anaphase promoting complex subunit 11 protein-coding 3.502 2.652 3.649 2.267 3.698 2.170 5.156 1.970 0.600 1.348 0.545 2.447 4.204 1.575 0.179 2.717 2.808 2.701 3.785 3.341 3.265 2.645 1.636 4.169 4.181 nan 3.070 2.814 4.862 3.989 4.206 1.694 3.805 2.572 2.879 2.669 2.890 nan 0.735 0.893 1.301 0.670 2.179 5.156 2.447 0.851 1.867 0.702 0.855 1517 chr6 129671170 129686873 + 0 NA intron (NM_000426, intron 32 of 64) intron (NM_000426, intron 32 of 64) 352349 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 0.742 0.798 0.706 0.146 0.165 0.103 0.368 0.086 0.072 0.072 0.105 0.106 0.229 0.042 0.123 0.433 0.448 0.555 0.471 0.188 0.263 7.351 1.250 0.343 0.296 0.344 0.395 0.467 0.627 0.720 0.226 0.224 0.329 0.070 0.110 0.213 0.427 0.443 0.495 0.014 1.021 0.006 0.026 0.368 0.106 0.030 0.026 0.095 0.079 1023 chr2 25531754 25538348 + 0 NA intron (NM_022552, intron 2 of 22) intron (NM_022552, intron 2 of 22) 16539 NR_031570 100302246 NR_031570 ENSG00000221445 MIR1301 MIRN1301|hsa-mir-1301|mir-1301 microRNA 1301 ncRNA 2.862 1.600 3.662 3.088 2.295 1.044 1.774 0.132 0.048 4.348 1.756 1.461 7.733 0.265 0.073 2.224 4.620 0.693 0.887 5.847 5.307 5.579 1.374 3.718 3.988 1.898 2.677 8.705 nan 1.702 2.004 1.042 1.565 2.065 1.955 2.069 6.863 2.949 1.567 4.092 2.412 0.917 0.798 1.774 1.461 1.497 2.470 1.124 2.632 1728 chr9 33286550 33298959 + 0 NA intron (NM_002504, intron 1 of 23) intron (NM_002504, intron 1 of 23) 2339 NM_001318758 4799 Hs.413074 NM_002504 ENSG00000086102 NFX1 NFX2|TEG-42|Tex42 nuclear transcription factor, X-box binding 1 protein-coding 2.354 nan 2.282 1.918 1.595 0.915 1.894 1.594 0.242 1.478 0.872 1.799 3.172 1.153 0.120 1.685 1.285 3.238 4.475 3.583 3.676 4.815 2.634 5.173 5.473 2.600 3.321 3.156 4.117 3.166 3.146 1.603 2.227 2.221 2.920 1.825 1.967 3.751 1.998 1.717 0.759 0.296 1.072 1.894 1.799 0.369 0.771 0.513 0.569 890 chr18 53559589 53563281 + 0 NA intron (NR_110755, intron 3 of 3) L2c|LINE|L2 25995 NR_110755 101927273 Hs.434335 NR_110755 ENSG00000260930 LINC01416 - long intergenic non-protein coding RNA 1416 ncRNA nan 0.939 1.248 2.271 1.606 0.780 0.316 1.080 0.198 0.042 0.131 6.648 0.501 0.347 0.119 0.732 0.523 0.158 0.362 0.275 0.724 7.782 5.042 22.999 25.483 0.353 0.511 7.610 10.431 0.468 0.309 5.545 7.773 5.139 4.343 2.362 2.043 nan 1.184 0.061 0.240 0.860 0.121 0.316 6.648 0.106 2.006 2.718 1.246 648 chr15 60281213 60301541 + 0 NA Intergenic Intergenic -5044 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 0.674 1.291 nan 1.676 0.494 0.292 1.938 0.089 0.110 0.185 0.114 0.082 9.329 0.080 0.079 0.244 0.127 0.172 0.304 0.653 0.604 nan 0.775 0.078 0.097 0.175 0.311 2.496 5.404 0.649 0.326 0.147 0.166 1.335 1.857 0.212 0.397 1.334 0.770 4.587 0.875 0.278 0.047 1.938 0.082 0.028 0.181 0.014 0.012 672 chr15 93420505 93432098 + 0 NA promoter-TSS (NR_037602) promoter-TSS (NR_037602) -225 NR_037602 100507217 Hs.622504 NR_037600 LINC01578 - long intergenic non-protein coding RNA 1578 ncRNA nan nan nan 3.388 4.926 2.692 2.656 2.847 0.283 2.426 1.335 5.336 9.076 3.010 0.117 3.116 4.037 4.605 6.781 6.465 6.454 nan 2.222 10.859 10.893 3.698 4.476 6.041 8.196 nan 11.969 3.304 6.955 3.181 2.663 5.844 nan 2.620 1.305 2.151 8.193 0.551 2.337 2.656 5.336 0.672 2.461 2.128 1.581 192 chr1 197880872 197887244 + 0 NA intron (NM_001014434, intron 1 of 5) intron (NM_001014434, intron 1 of 5) 2423 NM_001014434 56956 Hs.442578 NM_020204 ENSG00000143355 LHX9 - LIM homeobox 9 protein-coding 3.250 nan 1.515 0.467 1.140 0.731 2.991 0.457 0.051 1.118 0.926 0.258 3.264 0.318 0.099 0.398 0.500 0.799 1.441 3.855 3.176 0.085 0.067 0.645 0.802 7.009 8.639 0.940 1.098 1.487 1.469 0.304 0.351 4.775 3.374 0.562 1.072 2.042 1.227 0.036 0.330 1.638 1.668 2.991 0.258 0.350 0.583 0.109 0.240 62 chr1 39317101 39330456 + 0 NA intron (NM_022157, intron 1 of 6) intron (NM_022157, intron 1 of 6) 1717 NM_022157 64121 Hs.532461 NM_022157 ENSG00000116954 RRAGC GTR2|RAGC|TIB929 Ras related GTP binding C protein-coding 12.385 nan 1.296 2.312 1.001 0.419 0.614 1.171 0.264 0.460 0.363 1.668 2.395 0.820 0.187 0.729 1.053 1.436 1.668 1.528 1.702 nan 0.317 1.319 1.463 1.374 1.772 5.967 7.858 nan 0.557 1.264 2.047 0.285 0.421 1.092 2.127 28.669 18.519 0.418 0.719 0.050 0.299 0.614 1.668 0.100 0.327 0.436 0.280 629 chr14 105626432 105681819 + 0 NA Intergenic Intergenic -6465 NM_177533 256281 Hs.526432 NM_177533 ENSG00000183828 NUDT14 UGPP|UGPPase nudix hydrolase 14 protein-coding 1.347 1.178 1.236 2.263 1.820 0.978 0.864 0.195 0.093 0.754 0.533 1.817 1.243 0.378 0.077 1.208 2.193 0.372 0.617 3.072 3.167 2.932 0.739 1.027 1.031 0.462 0.843 5.289 5.096 0.789 0.617 0.888 1.252 0.664 0.514 0.286 0.505 0.409 0.211 4.240 1.869 0.171 1.086 0.864 1.817 0.356 0.914 0.578 0.111 1033 chr2 45150857 45174316 + 0 NA Intergenic CpG 6060 NR_103785 100506108 Hs.503113 NR_103785 ENSG00000236502 SIX3-AS1 SIX3OS SIX3 antisense RNA 1 ncRNA 2.355 nan 2.428 0.675 1.307 0.767 1.658 0.095 0.069 0.403 0.194 1.653 2.895 3.017 0.122 0.298 0.222 1.574 2.005 nan 3.161 1.376 0.559 1.445 1.624 0.506 0.833 1.736 2.252 1.187 1.332 0.193 0.319 2.346 1.920 4.165 nan nan 0.682 0.470 0.747 1.216 0.206 1.658 1.653 0.224 0.475 0.034 3.804 202 chr1 203456280 203469117 + 0 NA promoter-TSS (NM_014359) promoter-TSS (NM_014359) -573 NM_014359 26254 Hs.632468 NM_014359 ENSG00000188770 OPTC OPT opticin protein-coding 2.309 1.082 7.237 0.131 0.680 0.243 0.872 0.221 0.135 0.466 0.230 0.816 0.863 0.126 0.076 0.824 1.413 0.717 0.938 1.344 1.562 2.363 0.821 nan nan 2.739 3.435 0.331 0.583 2.681 2.739 0.357 0.550 1.313 0.842 0.670 1.919 1.902 1.110 0.030 0.618 0.553 0.180 0.872 0.816 1.022 0.040 0.177 0.433 840 chr17 80737363 80771635 + 0 NA intron (NM_005993, intron 7 of 38) intron (NM_005993, intron 7 of 38) 43432 NM_024702 79755 Hs.464391 NM_024702 ENSG00000141579 ZNF750 ZFP750 zinc finger protein 750 protein-coding 0.810 0.730 0.846 0.317 0.562 0.232 0.531 0.157 0.127 0.397 0.284 5.393 4.718 0.133 0.090 0.530 nan 0.438 0.707 nan 2.347 0.451 0.180 0.490 0.492 0.395 0.700 3.849 5.524 0.145 0.127 0.376 0.491 0.138 0.198 0.222 0.480 1.212 0.599 1.840 3.239 0.036 0.095 0.531 5.393 0.073 0.118 0.089 0.091 1250 chr3 21463340 21469100 + 0 NA intron (NM_024697, intron 6 of 7) intron (NM_024697, intron 6 of 7) 19002 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 0.561 0.639 0.557 0.061 0.051 0.028 0.156 0.314 0.057 0.054 0.262 0.084 0.111 0.019 0.076 0.184 0.144 9.059 6.214 0.207 0.207 0.083 0.054 0.199 0.137 0.413 0.629 0.308 0.397 nan 0.179 0.075 0.205 0.051 0.061 0.174 0.196 0.125 0.256 0.048 0.104 0.041 0.156 0.084 0.064 0.119 0.043 668 chr15 90539813 90553622 + 0 NA intron (NM_198526, intron 1 of 4) intron (NM_198526, intron 1 of 4) 1994 NM_198526 374655 Hs.459311 NM_198526 ENSG00000140548 ZNF710 - zinc finger protein 710 protein-coding nan nan nan 1.001 1.884 0.951 1.316 0.934 0.164 1.040 0.592 3.683 3.765 1.067 0.101 2.073 2.897 1.819 2.247 2.491 1.930 nan 0.438 8.854 9.173 0.812 1.242 3.673 4.154 nan 1.659 1.620 2.863 0.914 0.674 1.139 nan 0.756 0.498 0.981 1.678 0.219 0.571 1.316 3.683 0.525 0.867 0.851 0.313 979 chr19 48421033 48463194 + 0 NA promoter-TSS (NR_024218) promoter-TSS (NR_024218) -685 NR_024218 100170219 Hs.560634 NR_024218 SNAR-C4 - small ILF3/NF90-associated RNA C4 snRNA 1.582 1.487 1.617 0.277 0.871 0.533 0.503 0.182 0.309 0.150 0.268 0.173 0.524 12.007 0.790 0.551 0.379 0.255 0.254 0.547 0.659 1.118 0.377 0.537 0.496 0.584 0.955 0.573 0.628 1.054 0.365 0.341 0.455 0.193 0.360 0.759 1.589 0.681 0.742 0.074 0.166 0.095 0.109 0.503 0.173 0.124 0.344 0.077 0.280 1537 chr7 764946 778245 + 0 NA intron (NM_017802, intron 2 of 12) intron (NM_017802, intron 2 of 12) -4282 NM_001164758 5575 Hs.520851 NM_002735 ENSG00000188191 PRKAR1B PRKAR1 protein kinase cAMP-dependent type I regulatory subunit beta protein-coding 2.093 1.327 3.313 2.370 0.581 0.444 1.220 0.315 0.180 1.193 0.579 2.066 nan 1.154 0.209 2.210 1.645 0.899 nan 4.147 4.509 nan 0.703 3.826 3.914 1.130 1.703 nan 1.656 1.175 1.457 0.705 1.135 1.114 0.932 1.164 1.243 2.925 1.401 1.182 0.500 0.126 0.424 1.220 2.066 0.766 2.808 0.202 0.445 1369 chr5 3738427 3743693 + 0 NA Intergenic Intergenic 144892 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 0.442 0.734 0.719 0.167 0.171 0.062 0.442 0.125 0.123 0.097 0.172 0.159 0.390 0.020 0.043 0.648 0.523 8.818 7.265 0.538 0.541 0.062 0.067 0.074 0.091 0.204 0.281 nan 0.146 nan 0.392 0.295 0.305 0.008 0.066 0.093 0.070 0.326 nan 0.011 0.114 0.044 0.442 0.159 0.013 0.094 0.093 1295 chr3 156331480 156349511 + 0 NA Intergenic HERVL18-int|LTR|ERVL -51710 NM_015508 25976 Hs.744050 NM_015508 ENSG00000163659 TIPARP ARTD14|PARP7|pART14 TCDD inducible poly(ADP-ribose) polymerase protein-coding nan 1.260 0.737 1.105 0.891 0.426 0.693 0.297 0.090 0.397 0.312 0.529 0.597 0.103 0.087 0.309 0.265 0.392 1.084 0.469 0.655 4.177 0.621 0.296 0.285 0.281 nan 1.556 1.543 0.605 0.409 0.156 0.242 1.029 1.951 0.261 0.416 1.208 0.871 0.259 0.502 0.080 0.160 0.693 0.529 0.299 0.317 0.027 0.127 412 chr11 126867903 126875456 + 0 NA promoter-TSS (NM_001161707) promoter-TSS (NM_001161707) -913 NM_032531 84623 Hs.376015 NM_032531 ENSG00000149571 KIRREL3 KIRRE|MRD4|NEPH2|PRO4502 kin of IRRE like 3 (Drosophila) protein-coding 0.674 2.931 0.863 1.156 2.293 1.101 3.664 0.019 0.021 0.578 0.284 1.569 12.128 0.086 0.100 0.744 0.585 0.416 0.472 3.655 3.656 4.904 1.054 0.116 0.110 0.157 0.291 1.645 2.106 1.213 1.355 0.918 1.426 4.218 2.614 0.322 nan 2.373 1.213 0.437 1.101 1.392 0.264 3.664 1.569 0.139 0.041 0.118 0.387 1580 chr7 56145083 56152195 + 0 NA TTS (NM_001130069) TTS (NM_001130069) 12050 NM_001258459 5260 Hs.730821 NM_006213 ENSG00000164776 PHKG1 PHKG phosphorylase kinase catalytic subunit gamma 1 protein-coding nan 2.501 1.873 2.902 1.442 0.835 0.236 0.394 0.247 1.281 1.073 3.704 4.694 0.108 0.137 0.552 0.679 0.557 1.017 4.723 4.256 0.882 0.461 0.657 0.567 0.554 0.895 4.004 3.376 0.229 0.216 0.239 0.233 0.589 0.431 0.387 0.758 1.128 0.620 1.486 0.391 0.228 0.308 0.236 3.704 0.361 7.690 0.042 0.156 1260 chr3 56809766 56822176 + 0 NA intron (NM_001128615, intron 4 of 12) intron (NM_001128615, intron 4 of 12) -6226 NM_001128616 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 1.391 1.379 nan 0.376 0.387 0.245 0.140 0.179 0.090 0.227 0.348 0.722 2.045 0.053 0.100 0.537 0.543 0.422 0.968 0.641 0.743 1.107 0.380 0.383 0.339 0.594 1.228 3.366 2.876 nan 0.315 0.396 0.767 0.685 0.615 0.174 0.286 1.802 1.044 1.578 0.570 0.129 0.013 0.140 0.722 0.205 2.950 0.312 0.102 544 chr13 77899162 77905305 + 0 NA Intergenic Intergenic -1056 NM_015057 23077 Hs.591221 NM_015057 ENSG00000005810 MYCBP2 Myc-bp2|PAM|Phr MYC binding protein 2, E3 ubiquitin protein ligase protein-coding nan 2.475 4.535 3.887 5.256 2.949 4.939 2.443 0.183 1.416 0.696 3.662 11.471 1.657 0.129 6.643 10.030 3.438 4.492 7.034 4.961 6.880 1.893 3.693 3.628 1.565 2.015 4.148 4.632 nan 7.392 5.430 10.830 1.869 1.164 5.100 6.387 0.820 0.554 1.747 6.223 0.464 4.727 4.939 3.662 1.668 1.386 5.538 1.819 142 chr1 155900097 155917091 + 0 NA Intergenic Intergenic -2886 NM_181885 339403 Hs.449914 NM_181885 ENSG00000173080 RXFP4 GPCR142|GPR100|RLN3R2|RXFPR4 relaxin/insulin like family peptide receptor 4 protein-coding nan nan 2.448 1.760 2.183 1.198 1.840 1.542 0.257 1.584 0.867 1.556 10.474 1.586 0.093 2.589 2.852 2.973 4.900 3.474 nan 3.084 1.281 1.850 1.813 2.135 2.944 4.765 4.363 2.539 2.098 3.201 4.399 1.740 2.282 2.428 3.355 1.745 1.055 0.919 1.884 0.388 0.624 1.840 1.556 0.438 2.935 1.361 0.784 226 chr1 231661474 231665542 + 0 NA promoter-TSS (NM_005999) promoter-TSS (NM_005999) -891 NR_028399 100303453 Hs.13318 NR_028393 ENSG00000270106 TSNAX-DISC1 - TSNAX-DISC1 readthrough (NMD candidate) ncRNA 4.717 3.641 4.000 7.351 5.791 2.730 4.160 3.090 0.239 3.262 1.684 3.166 6.622 2.529 0.130 6.032 6.047 10.801 13.228 8.200 9.048 9.369 7.060 10.509 12.391 3.740 5.017 nan 10.162 5.603 4.983 3.797 3.947 4.522 4.430 5.779 5.764 nan 1.893 2.540 1.377 0.681 1.894 4.160 3.166 0.658 1.617 1.047 1.816 1615 chr7 135741953 135761113 + 0 NA Intergenic Intergenic -89329 NM_001128619 767558 Hs.602015 NM_001128619 ENSG00000267697 LUZP6 MPD6|MTPNUT leucine zipper protein 6 protein-coding nan nan nan 0.264 0.777 0.403 0.174 0.414 0.092 0.236 0.136 0.068 0.331 0.085 0.183 0.544 0.603 0.403 0.245 0.373 0.426 nan 2.765 0.230 0.224 0.155 nan 0.773 0.932 nan 0.182 0.261 0.340 2.062 1.791 0.731 2.034 2.687 nan 0.247 0.163 0.451 0.095 0.174 0.068 0.045 0.584 0.042 0.303 744 chr17 8073175 8080980 + 0 NA 3' UTR (NM_032354, exon 5 of 5) 3' UTR (NM_032354, exon 5 of 5) 2637 NM_032354 84314 Hs.513933 NM_032354 ENSG00000179029 TMEM107 GRVS638|PRO1268 transmembrane protein 107 protein-coding 3.075 2.077 2.284 2.175 3.993 1.957 2.231 0.756 0.154 0.833 0.635 2.762 5.961 1.110 0.089 5.607 6.294 4.566 6.514 5.675 6.408 5.877 4.810 3.779 4.376 2.057 2.625 4.891 6.597 2.891 2.791 3.760 4.683 2.052 2.914 5.790 6.935 0.867 0.416 2.990 1.763 0.327 0.896 2.231 2.762 1.310 2.986 1.597 1.696 1416 chr5 91438908 91454017 + 0 NA Intergenic Intergenic -767272 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding nan 7.922 0.544 0.397 0.248 0.095 0.736 0.139 0.084 0.072 0.093 0.241 0.079 0.111 0.203 0.146 0.813 0.636 0.253 0.408 0.272 0.165 0.124 0.152 0.245 0.452 0.216 0.222 0.447 0.133 0.110 0.190 1.468 1.220 0.234 nan 0.268 0.185 0.058 0.064 0.592 0.037 0.736 0.007 0.047 0.071 0.083 284 chr10 119300288 119306172 + 0 NA intron (NM_001165924, intron 1 of 1) CpG -1130 NR_144378 196047 Hs.312592 NR_002791 ENSG00000229847 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 0.630 nan 0.395 0.030 0.983 0.355 0.997 0.089 0.054 0.159 0.140 0.082 1.837 0.112 0.028 1.154 3.415 2.184 2.130 0.074 0.176 1.339 0.426 0.086 0.104 0.433 0.863 0.087 0.138 0.648 0.643 0.349 0.291 3.563 3.400 0.064 0.065 0.527 0.384 0.009 0.123 1.797 6.689 0.997 0.082 0.067 0.034 1034 chr2 46523364 46543289 + 0 NA intron (NM_001430, intron 1 of 15) intron (NM_001430, intron 1 of 15) 8785 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 0.894 nan 0.974 2.011 1.543 0.830 0.374 1.224 0.274 0.622 0.205 0.300 1.549 0.088 0.090 0.267 0.207 0.491 1.045 nan 0.511 1.262 0.875 0.511 0.513 0.153 0.378 1.566 2.770 0.450 0.289 0.182 0.233 0.068 0.063 0.266 nan nan 0.745 0.037 0.236 0.014 0.043 0.374 0.300 0.082 1.957 0.030 0.055 787 chr17 41515612 41536852 + 0 NA Intergenic Intergenic 4058 NR_031751 100313779 NR_031751 ENSG00000267151 MIR2117 - microRNA 2117 ncRNA 1.760 2.761 nan 0.248 0.604 0.279 0.463 0.216 0.157 0.198 0.182 0.120 0.410 0.107 0.095 0.309 0.298 0.202 0.322 0.334 nan 0.276 0.121 0.454 0.483 1.021 1.386 0.217 nan 1.749 1.402 0.269 0.253 2.680 2.713 0.623 2.838 1.006 0.628 0.044 0.235 1.068 0.184 0.463 0.120 0.580 0.086 0.107 0.951 213 chr1 214150343 214196901 + 0 NA intron (NM_001270616, intron 2 of 4) intron (NM_001270616, intron 2 of 4) 11778 NM_002763 5629 Hs.741808 NM_002763 ENSG00000117707 PROX1 - prospero homeobox 1 protein-coding 1.841 2.253 3.283 4.769 1.920 0.992 0.619 0.124 0.072 3.027 1.627 4.896 nan 0.074 0.114 2.152 2.582 2.735 2.088 8.472 8.395 nan 1.885 4.645 4.919 2.891 nan 4.852 4.667 0.992 0.908 1.115 2.091 2.911 2.729 1.043 2.412 3.725 1.891 0.048 1.239 0.672 1.812 0.619 4.896 0.284 1.566 1.215 0.407 819 chr17 73891543 73911888 + 0 NA promoter-TSS (NM_032478) promoter-TSS (NM_032478) -534 NM_032478 64978 Hs.442609 NM_032478 ENSG00000204316 MRPL38 HSPC262|L38MT|MRP-L3|MRP-L38|RPML3 mitochondrial ribosomal protein L38 protein-coding 2.178 1.712 1.812 1.528 2.160 1.185 1.195 0.633 0.374 1.961 1.368 2.370 4.400 1.276 0.141 2.173 2.948 1.277 2.120 3.644 2.998 3.553 1.240 2.466 2.463 nan 2.152 4.345 5.227 2.620 2.680 0.978 1.653 2.911 2.244 2.250 2.770 nan 0.934 0.843 2.798 0.631 0.505 1.195 2.370 0.369 2.321 0.471 0.806 392 chr11 100689112 100707591 + 0 NA intron (NM_152432, intron 3 of 23) LTR78|LTR|ERV1 -139665 NR_133571 100128386 Hs.635125 NR_133571 ENSG00000248027 LOC100128386 - uncharacterized LOC100128386 ncRNA 0.944 1.018 0.821 0.048 0.402 0.193 0.276 0.945 0.017 0.068 0.144 0.045 0.747 0.041 0.105 0.767 0.553 0.434 0.738 0.446 0.479 0.147 0.095 0.512 0.551 3.219 4.108 0.177 0.160 0.532 0.249 0.245 0.310 0.444 0.380 0.331 0.966 2.214 1.150 0.015 0.132 0.036 0.254 0.276 0.045 0.331 0.307 0.096 0.224 789 chr17 42287532 42300456 + 0 NA exon (NM_001076684, exon 3 of 20) exon (NM_001076684, exon 3 of 20) 3047 NM_014233 7343 Hs.89781 NM_014233 ENSG00000108312 UBTF NOR-90|UBF|UBF-1|UBF1|UBF2 upstream binding transcription factor, RNA polymerase I protein-coding 5.149 3.767 nan 4.329 5.423 2.708 4.380 1.809 0.362 3.035 1.598 4.927 7.488 3.051 0.099 4.779 5.538 2.971 4.409 7.234 nan 4.607 1.486 7.156 7.291 2.025 2.823 6.165 nan 6.057 7.501 3.333 6.341 3.862 3.099 4.533 5.899 1.927 1.052 3.565 4.259 1.509 3.298 4.380 4.927 1.166 3.617 2.354 2.694 42 chr1 22643264 22652286 + 0 NA Intergenic Intergenic 55043 NR_039613 100616433 NR_039613 ENSG00000266564 MIR4418 - microRNA 4418 ncRNA 1.326 0.996 nan 0.265 1.009 0.426 5.874 0.055 0.036 0.585 0.772 0.292 1.596 0.056 0.088 6.033 7.069 0.189 0.199 1.861 1.790 1.828 1.576 0.384 0.341 1.077 1.461 0.616 0.938 0.896 0.860 0.560 0.818 2.261 2.248 0.745 1.369 0.752 0.800 0.111 0.525 1.065 2.667 5.874 0.292 0.483 0.136 0.704 0.248 1722 chr9 14336924 14355612 + 0 NA intron (NM_001190738, intron 1 of 8) CpG -32223 NM_001190737 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding nan nan 2.491 0.962 0.567 0.306 0.511 1.018 0.163 1.392 0.976 1.259 2.163 0.179 0.080 0.228 0.115 1.137 1.853 1.460 1.264 2.188 0.752 0.194 0.189 47.709 48.713 0.698 0.683 0.341 0.271 0.288 0.421 0.535 0.375 0.184 0.454 8.146 4.948 2.067 0.081 0.133 0.166 0.511 1.259 0.041 0.223 0.063 0.053 618 chr14 96667668 96693622 + 0 NA intron (NM_000623, intron 1 of 2) intron (NM_000623, intron 1 of 2) 9510 NM_000623 624 Hs.654542 NM_000623 ENSG00000168398 BDKRB2 B2R|BK-2|BK2|BKR2|BRB2 bradykinin receptor B2 protein-coding 1.934 0.952 nan 0.550 0.445 0.242 0.389 0.801 0.150 0.298 0.102 0.349 1.445 0.063 0.080 0.247 0.254 0.167 0.358 1.087 0.926 0.926 0.318 0.769 0.773 0.407 0.709 1.141 1.322 3.631 4.583 0.338 0.408 0.976 1.181 0.131 0.279 nan 0.664 0.178 0.354 0.158 0.100 0.389 0.349 0.223 1.005 0.108 0.038 1655 chr8 73722008 73743956 + 0 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) 88702 NR_110656 101926908 Hs.680588 NR_110656 ENSG00000253726 LOC101926908 - uncharacterized LOC101926908 ncRNA 1.967 1.464 1.617 2.826 2.319 1.180 0.732 0.132 0.139 1.321 0.503 6.516 2.336 0.020 0.089 0.580 0.814 0.341 0.435 6.107 6.199 6.044 3.502 0.673 0.597 0.754 1.223 3.453 5.264 0.850 0.727 0.429 0.728 4.076 4.595 1.009 3.101 4.689 2.172 2.331 3.171 1.169 0.228 0.732 6.516 0.098 1.393 0.437 0.985 959 chr19 41103693 41121639 + 0 NA intron (NM_001042545, intron 6 of 30) AluSz|SINE|Alu 5389 NM_001042545 8425 Hs.466766 NM_003573 ENSG00000090006 LTBP4 ARCL1C|LTBP-4|LTBP4L|LTBP4S latent transforming growth factor beta binding protein 4 protein-coding 1.194 0.986 0.949 0.624 1.474 0.834 1.064 0.501 0.159 0.395 0.229 0.554 9.453 1.957 0.100 0.274 0.367 0.677 0.994 1.015 0.883 1.064 0.252 0.537 0.563 1.135 1.603 2.591 3.543 1.182 0.998 0.623 0.690 0.283 0.276 1.076 2.054 1.269 0.716 0.637 1.478 0.021 0.259 1.064 0.554 0.953 1.696 0.432 0.605 221 chr1 226294995 226301506 + 0 NA Intergenic CpG 47822 NR_002315 440926 Hs.533624 NR_002315 H3F3AP4 p13 H3 histone, family 3A, pseudogene 4 pseudo 4.887 nan 14.163 4.473 3.557 1.918 2.122 1.127 0.322 3.581 1.587 3.295 4.169 1.599 0.091 1.438 2.323 3.292 5.278 6.928 nan 5.294 1.755 5.393 5.011 2.006 2.504 6.083 9.635 3.130 3.722 0.674 1.162 2.479 1.744 3.520 6.002 1.816 1.193 2.597 0.914 0.568 0.366 2.122 3.295 0.238 2.981 0.501 1.864 371 chr11 71931489 71944279 + 0 NA intron (NM_001567, intron 1 of 27) intron (NM_001567, intron 1 of 27) 2002 NM_001567 3636 Hs.523875 NM_001567 ENSG00000165458 INPPL1 OPSMD|SHIP2 inositol polyphosphate phosphatase like 1 protein-coding nan 2.876 3.490 5.455 6.600 3.330 0.862 0.916 0.176 3.859 2.028 4.962 7.871 2.667 0.151 2.685 4.489 1.957 2.498 5.962 6.358 7.112 2.166 4.220 4.191 1.340 1.953 5.174 6.086 0.985 0.875 1.055 2.333 4.349 3.595 0.744 1.375 2.602 1.279 4.508 4.840 2.130 2.123 0.862 4.962 0.343 3.474 1.500 0.316 578 chr14 29119878 29132902 + 0 NA Intergenic Intergenic 108135 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 (head to head) ncRNA 0.943 0.919 0.932 0.960 0.270 0.228 0.609 0.120 0.099 0.168 0.109 0.377 0.758 0.041 0.141 0.192 0.141 0.258 0.353 0.441 0.590 11.309 5.295 0.243 0.226 0.445 0.522 0.691 0.795 0.702 0.317 0.115 0.117 2.292 2.701 0.195 0.222 0.437 0.506 0.074 0.403 0.411 0.091 0.609 0.377 0.022 0.078 0.015 0.029 1521 chr6 134286859 134305447 + 0 NA intron (NM_004865, intron 1 of 6) L1M5|LINE|L1 21852 NM_004865 9519 Hs.486507 NM_004865 ENSG00000028839 TBPL1 MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2 TATA-box binding protein like 1 protein-coding 1.143 0.918 1.527 0.408 0.349 0.112 0.358 0.537 0.069 0.093 0.092 0.277 0.549 0.257 0.109 1.818 1.460 5.372 3.515 0.971 1.025 nan 0.493 0.339 0.350 2.818 3.050 0.386 0.344 2.248 2.045 0.300 0.739 0.907 1.261 0.723 nan 0.596 0.456 0.045 0.347 0.133 0.116 0.358 0.277 0.109 0.108 0.271 0.416 785 chr17 41430453 41450133 + 0 NA Intergenic Intergenic 25973 NR_027413 100130581 Hs.546897 NR_027412 ENSG00000188825 LINC00910 - long intergenic non-protein coding RNA 910 ncRNA 2.655 3.343 nan 3.197 5.620 3.047 2.389 2.217 0.696 2.080 1.097 2.366 6.056 2.071 0.160 1.805 2.364 2.807 3.817 9.116 nan 4.017 3.271 10.448 11.612 1.021 1.405 3.195 nan 6.479 6.484 5.199 5.502 2.786 2.902 3.329 4.510 1.944 1.146 3.785 4.314 0.348 1.260 2.389 2.366 1.149 1.613 1.945 1.140 1067 chr2 145106922 145144362 + 0 NA Intergenic MLT1L|LTR|ERVL-MaLR -35541 NM_001284238 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 1.145 nan 1.563 0.099 0.301 0.136 0.194 0.344 0.069 0.130 0.120 0.153 0.312 0.073 0.095 0.310 0.276 2.397 2.670 0.279 0.327 0.135 0.077 0.243 0.277 0.981 1.435 0.326 0.345 0.622 0.354 0.144 0.327 0.042 0.046 0.419 0.621 0.337 0.372 0.043 0.038 0.013 0.049 0.194 0.153 0.135 0.034 0.087 0.145 1070 chr2 153572492 153576817 + 0 NA promoter-TSS (NM_017892) promoter-TSS (NM_017892) 247 NM_152522 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 8.676 3.621 6.614 7.899 7.214 3.370 5.020 3.414 0.260 3.170 1.412 6.872 18.949 4.735 0.147 9.331 9.627 10.528 13.418 10.278 8.461 9.950 4.505 21.592 22.815 6.369 7.902 9.077 11.296 12.935 16.447 5.801 10.351 6.601 5.867 11.840 11.454 3.461 1.785 6.370 4.758 1.414 3.315 5.020 6.872 2.178 1.619 2.781 3.256 1107 chr2 219259635 219272431 + 0 NA intron (NM_182642, intron 1 of 6) intron (NM_182642, intron 1 of 6) -1336 NR_029500 407017 NR_029500 ENSG00000199121 MIR26B MIRN26B|hsa-mir-26b|miR-26b microRNA 26b ncRNA nan 2.461 nan 4.532 5.109 2.367 1.716 2.336 0.389 1.153 0.849 3.843 10.167 8.554 0.203 1.493 3.510 2.542 3.536 2.622 2.150 2.651 0.813 3.193 3.274 1.681 2.252 8.791 nan 2.562 2.827 1.129 2.247 0.954 1.008 1.699 2.766 1.533 0.855 4.368 1.713 0.155 0.901 1.716 3.843 0.995 4.232 1.439 1.472 799 chr17 46615014 46698227 + 0 NA promoter-TSS (NM_024015) promoter-TSS (NM_024015) 689 NR_029608 406902 NR_029608 ENSG00000257178 MIR10A MIRN10A|hsa-mir-10a|miRNA10A|mir-10a microRNA 10a ncRNA 1.365 8.785 nan 5.908 4.645 2.499 0.110 0.109 0.052 5.508 2.511 4.983 13.399 2.246 0.117 0.384 0.608 0.405 0.581 2.671 nan 2.250 0.816 1.283 1.380 1.477 2.234 3.092 nan 1.021 0.607 0.193 0.237 4.154 3.180 0.113 0.213 4.568 2.330 1.542 8.665 1.512 0.033 0.110 4.983 0.040 1.488 0.045 0.050 1341 chr4 77350498 77392158 + 0 NA intron (NM_020859, intron 1 of 10) intron (NM_020859, intron 1 of 10) 15075 NM_020859 57619 Hs.683808 NM_020859 ENSG00000138771 SHROOM3 APXL3|MSTP013|SHRM|ShrmL shroom family member 3 protein-coding 0.655 0.609 0.488 0.159 0.587 0.273 0.485 0.730 0.139 0.056 0.098 0.508 0.281 4.488 0.176 0.273 0.167 0.292 0.561 0.474 0.480 0.617 0.195 0.409 0.387 0.217 0.392 0.449 0.411 0.312 0.154 0.118 0.164 0.109 0.123 0.158 0.319 0.310 0.309 0.036 0.144 0.020 0.069 0.485 0.508 0.019 0.034 0.035 0.039 1166 chr20 48749979 48790394 + 0 NA non-coding (NR_027889, exon 1 of 7) non-coding (NR_027889, exon 1 of 7) 149 NM_199203 387522 Hs.744839 NM_003349 ENSG00000124208 TMEM189-UBE2V1 CROC-1B|CROC1B|KUA-UEV TMEM189-UBE2V1 readthrough protein-coding nan nan 1.155 1.002 0.847 0.504 1.005 1.001 0.368 0.346 0.253 1.122 1.493 2.412 0.160 2.656 3.700 1.161 2.325 1.222 1.104 nan 0.662 1.635 1.684 1.041 1.629 2.259 2.762 nan 1.002 1.014 1.654 0.366 0.653 0.654 1.071 1.169 0.803 0.644 0.435 0.059 0.366 1.005 1.122 0.250 1.201 0.465 0.268 201 chr1 203442378 203451477 + 0 NA intron (NM_002725, intron 1 of 2) intron (NM_002725, intron 1 of 2) 2044 NM_002725 5549 Hs.632481 NM_002725 ENSG00000188783 PRELP MST161|MSTP161|SLRR2A proline and arginine rich end leucine rich repeat protein protein-coding 2.012 1.283 3.987 0.242 0.663 0.390 1.195 0.157 0.230 0.433 0.283 1.001 0.963 0.118 0.187 0.732 1.121 0.450 0.881 1.294 1.388 1.921 0.658 nan nan 5.135 5.787 1.218 1.379 0.523 0.309 0.322 0.488 1.855 1.087 0.510 1.596 1.450 0.876 0.028 0.528 0.845 0.141 1.195 1.001 0.457 0.034 0.088 0.235 1465 chr6 21100891 21118284 + 0 NA intron (NM_017774, intron 13 of 15) intron (NM_017774, intron 13 of 15) 402536 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 1.254 1.447 nan 1.491 1.781 0.866 0.548 0.534 0.120 0.675 0.607 1.984 nan 0.169 0.085 0.481 0.359 0.623 nan 0.741 1.203 nan 0.428 0.682 0.734 1.031 1.349 1.587 1.230 0.616 0.346 0.175 0.356 1.482 2.234 0.379 0.972 2.427 0.995 1.135 0.646 0.490 0.087 0.548 1.984 0.039 0.192 0.102 0.235 1470 chr6 30836168 30859606 + 0 NA Intergenic Intergenic -2503 NM_001297652 780 Hs.631988 NM_001954 ENSG00000204580 DDR1 CAK|CD167|DDR|EDDR1|HGK2|MCK10|NEP|NTRK4|PTK3|PTK3A|RTK6|TRKE discoidin domain receptor tyrosine kinase 1 protein-coding nan 2.286 nan 0.979 1.520 0.759 4.363 1.000 0.248 0.382 0.204 2.183 3.898 1.155 0.112 1.947 2.517 4.793 nan nan 2.315 5.109 1.680 1.026 1.077 1.005 1.691 2.172 2.735 1.032 1.317 0.788 1.574 1.658 1.540 0.579 0.851 1.412 0.846 3.418 2.213 0.491 1.433 4.363 2.183 0.662 1.223 1.134 0.248 184 chr1 183482299 183489901 + 0 NA intron (NM_001331007, intron 4 of 23) intron (NM_001331007, intron 4 of 23) 44594 NM_173156 9887 Hs.591463 NM_014837 ENSG00000116698 SMG7 C1orf16|EST1C|SGA56M SMG7, nonsense mediated mRNA decay factor protein-coding nan nan 1.218 0.103 0.508 0.359 0.294 0.400 0.275 0.535 0.342 0.206 0.372 0.115 0.117 0.507 0.604 3.580 2.548 0.492 nan 1.080 0.340 nan 0.661 0.794 1.214 0.648 0.417 0.405 0.217 1.963 3.491 3.645 7.633 0.433 nan 0.779 0.623 0.066 0.129 1.226 0.084 0.294 0.206 0.254 4.561 0.081 1329 chr4 38663649 38677295 + 0 NA intron (NM_016531, intron 1 of 5) intron (NM_016531, intron 1 of 5) -4223 NR_026804 79667 Hs.29725 NM_024614 ENSG00000231160 KLF3-AS1 - KLF3 antisense RNA 1 ncRNA 2.927 3.277 3.401 5.332 8.033 4.819 2.224 1.919 0.189 2.710 1.224 4.429 6.743 3.657 0.119 3.429 5.018 1.956 3.731 3.860 3.255 2.879 1.546 3.749 3.539 2.959 4.014 7.490 6.091 2.256 3.336 1.569 3.413 2.318 2.450 0.231 0.246 3.004 1.728 1.127 4.045 0.747 0.900 2.224 4.429 0.486 1.384 1.187 0.200 1226 chr22 34458420 34474726 + 0 NA Intergenic MER46C|DNA|TcMar-Tigger -150157 NM_133642 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding nan 0.572 1.008 0.049 0.207 0.089 0.127 0.051 0.050 0.019 0.061 0.066 0.218 0.007 0.061 0.273 0.158 0.131 nan 0.217 0.256 0.077 0.040 0.051 0.058 0.151 nan 0.203 0.293 1.420 1.562 0.146 0.143 0.031 0.058 1.151 5.631 0.259 0.291 0.007 0.062 0.012 0.030 0.127 0.066 0.030 0.081 0.051 2.585 1115 chr2 233364180 233392028 + 0 NA Intergenic Intergenic -7069 NM_001195129 646960 Hs.570310 NM_001195129 ENSG00000237412 PRSS56 MCOP6 protease, serine 56 protein-coding 1.461 nan 1.256 0.141 0.543 0.264 1.194 0.024 0.035 0.134 0.112 0.112 0.705 0.117 0.090 0.392 0.348 0.269 0.342 0.641 0.450 0.426 0.122 0.687 0.699 0.107 0.277 0.443 nan 0.623 0.594 0.310 0.314 0.112 0.218 1.160 4.554 0.308 0.272 0.186 0.051 0.017 0.031 1.194 0.112 0.090 3.386 0.039 1.009 1022 chr2 25473938 25476093 + 0 NA promoter-TSS (NM_001320893) promoter-TSS (NM_001320893) -15 NM_001320893 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 8.113 2.470 9.894 5.937 6.686 3.251 6.281 0.585 0.299 0.203 0.263 5.310 21.567 5.244 0.122 8.393 8.713 6.483 7.252 12.479 11.378 9.063 3.643 24.081 25.434 0.155 0.549 11.540 19.354 8.112 9.967 5.194 8.503 2.363 2.031 11.845 8.779 1.935 1.186 8.730 6.101 0.263 3.524 6.281 5.310 6.161 1.921 2.542 3.733 214 chr1 214278712 214285286 + 0 NA Intergenic AluSz|SINE|Alu 120155 NM_002763 5629 Hs.741808 NM_002763 ENSG00000117707 PROX1 - prospero homeobox 1 protein-coding 1.328 1.056 1.065 0.106 0.571 0.399 0.433 0.181 0.170 0.323 0.182 0.385 nan 0.065 0.126 1.444 2.025 8.101 4.658 0.643 0.712 nan 0.428 0.592 0.559 0.685 nan 0.761 0.650 0.343 0.198 0.647 0.639 0.143 0.161 0.402 1.211 1.240 0.860 0.068 0.013 0.015 0.690 0.433 0.385 0.031 0.092 0.111 0.354 975 chr19 48298577 48306282 + 0 NA Intergenic Intergenic 4432 NM_198479 284355 Hs.629812 NM_198479 ENSG00000178928 TPRX1 TPRX tetrapeptide repeat homeobox 1 protein-coding 1.091 0.771 1.144 0.113 0.344 0.265 0.100 0.078 0.126 0.142 0.031 0.062 0.218 0.107 0.146 0.229 0.160 0.222 0.308 0.334 0.460 0.355 0.165 0.274 0.229 0.242 0.459 0.212 0.229 0.881 0.456 0.215 0.203 0.114 0.052 2.809 10.668 0.367 0.482 0.032 0.035 0.038 0.042 0.100 0.062 0.034 0.064 5.119 1290 chr3 141048505 141066976 + 0 NA intron (NM_001080412, intron 1 of 7) L2a|LINE|L2 14685 NM_001080412 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 1.204 nan nan 0.327 0.422 0.130 0.208 0.239 0.096 0.229 0.196 0.065 0.205 0.047 0.102 0.306 0.224 0.212 0.256 0.285 0.385 nan 2.133 0.279 0.297 0.308 nan 0.268 nan nan 0.322 0.175 0.216 0.059 0.092 0.362 0.828 0.727 0.648 0.033 0.094 0.026 0.086 0.208 0.065 0.037 0.078 0.027 0.187 1478 chr6 32152730 32169338 + 0 NA promoter-TSS (NM_001276501).7 promoter-TSS (NM_001276501).7 -342 NM_001276501 63940 Hs.520046 NM_022107 ENSG00000213654 GPSM3 AGS4|C6orf9|G18|G18.1a|G18.1b|G18.2|NG1 G-protein signaling modulator 3 protein-coding nan 1.736 nan 2.079 2.549 1.292 4.787 2.295 0.243 0.625 0.338 3.952 3.848 3.576 0.121 3.827 5.116 3.607 nan nan 4.169 2.535 2.016 3.643 3.912 1.459 2.065 4.848 5.578 2.838 2.481 2.429 2.949 1.939 1.552 2.019 3.606 1.730 0.928 1.872 1.218 0.413 0.985 4.787 3.952 0.671 1.777 1.151 1.682 1681 chr8 128655923 128659434 + 0 NA Intergenic Intergenic 88535 NR_117101 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility candidate 11 (non-protein coding) ncRNA 22.474 11.806 20.608 0.459 1.114 0.374 0.145 0.215 0.045 0.179 0.166 0.102 nan 0.125 0.093 0.447 0.550 0.840 1.593 0.834 0.799 2.804 0.665 nan nan 43.817 45.785 5.708 6.518 95.099 80.157 0.491 1.080 2.879 2.683 52.647 68.564 0.869 0.585 0.063 0.397 1.226 0.873 0.145 0.102 7.950 0.224 0.553 85.790 1223 chr22 29490612 29507011 + 0 NA intron (NM_032045, intron 3 of 9) intron (NM_032045, intron 3 of 9) 29745 NM_032045 83999 Hs.229335 NM_032045 ENSG00000183762 KREMEN1 KREMEN|KRM1 kringle containing transmembrane protein 1 protein-coding nan 0.611 0.798 0.209 0.282 0.136 0.461 0.190 0.099 0.038 0.079 0.415 0.256 0.066 0.070 0.554 0.434 6.898 nan 0.427 0.468 0.381 0.140 0.411 0.385 1.870 nan 0.927 0.808 1.400 0.802 0.145 0.349 0.810 0.881 0.714 nan 1.113 0.892 0.054 0.129 0.336 0.073 0.461 0.415 0.793 0.056 0.061 0.602 67 chr1 41090445 41129816 + 0 NA intron (NM_014747, intron 2 of 7) L2b|LINE|L2 21194 NM_014747 9783 Hs.654808 NM_014747 ENSG00000117016 RIMS3 NIM3|RIM3 regulating synaptic membrane exocytosis 3 protein-coding 12.410 0.675 nan 0.129 0.640 0.286 15.194 0.133 0.140 0.263 0.187 0.782 0.675 0.113 0.129 0.576 0.940 0.196 0.328 1.901 1.578 0.575 0.202 0.369 0.383 0.519 nan nan 1.231 0.552 0.453 0.820 nan 0.287 0.269 0.655 1.538 1.716 1.115 0.755 0.396 0.043 0.496 15.194 0.782 0.138 0.131 0.341 0.387 1556 chr7 15714413 15732830 + 0 NA intron (NM_005924, intron 1 of 2) intron (NM_005924, intron 1 of 2) 2687 NM_005924 4223 Hs.170355 NM_005924 ENSG00000106511 MEOX2 GAX|MOX2 mesenchyme homeobox 2 protein-coding nan 0.996 nan 0.235 0.255 0.122 3.766 0.214 0.088 1.229 0.734 0.176 0.393 0.082 0.182 nan 0.229 0.140 0.203 0.468 0.519 0.229 0.147 0.626 0.659 0.535 0.732 0.444 0.491 8.172 9.317 0.085 0.131 0.104 0.101 0.141 0.413 3.843 2.159 0.033 0.039 0.021 0.061 3.766 0.176 0.027 0.076 0.043 0.047 710 chr16 52572332 52614128 + 0 NA intron (NR_033920, intron 3 of 3) intron (NR_033920, intron 3 of 3) -11516 NM_001146188 27324 Hs.132574 NM_001080430 ENSG00000103460 TOX3 CAGF9|TNRC9 TOX high mobility group box family member 3 protein-coding nan nan nan 3.870 2.090 0.971 1.862 0.077 0.077 0.162 0.114 3.411 4.422 0.034 0.083 0.483 0.415 0.217 0.229 3.850 3.502 2.922 0.636 3.067 3.080 1.124 nan 8.534 nan nan 0.468 0.200 0.289 0.668 0.561 0.412 nan nan 0.660 1.619 1.810 0.098 0.297 1.862 3.411 0.189 1.065 0.062 0.094 1764 chr9 133530975 133548608 + 0 NA promoter-TSS (NM_021619) promoter-TSS (NM_021619) -190 NM_021619 59335 Hs.495311 NM_021619 ENSG00000130711 PRDM12 HSAN8|PFM9 PR/SET domain 12 protein-coding nan 0.533 0.726 0.286 0.252 0.181 0.349 0.091 0.091 0.090 0.060 0.299 0.640 0.088 0.062 0.182 0.123 0.207 0.244 14.275 12.127 nan 0.176 0.181 0.167 0.757 0.901 0.368 0.450 1.073 0.630 0.141 0.123 0.141 0.346 0.263 0.364 0.360 0.345 0.159 0.207 0.043 0.091 0.349 0.299 0.520 0.984 0.028 0.042 653 chr15 63738410 63744157 + 0 NA Intergenic AluSc8|SINE|Alu -55427 NM_006537 9960 Hs.458499 NM_006537 ENSG00000140455 USP3 SIH003|UBP ubiquitin specific peptidase 3 protein-coding 0.944 1.384 nan 1.178 0.878 0.389 0.599 0.180 0.028 1.612 0.844 2.241 0.956 0.019 0.041 1.523 1.787 7.919 7.130 2.092 1.752 nan 1.408 0.337 0.365 0.766 0.770 1.895 1.624 0.845 0.700 0.443 0.515 1.897 1.175 0.366 1.354 1.887 1.138 0.144 1.029 0.320 0.194 0.599 2.241 0.169 0.211 0.068 0.193 1291 chr3 141090775 141134139 + 0 NA intron (NM_001080412, intron 5 of 7) intron (NM_001080412, intron 5 of 7) 69402 NM_001080412 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 1.901 nan nan 0.662 2.114 1.124 1.176 2.000 0.204 1.928 1.223 1.617 0.554 0.242 0.082 2.828 3.973 1.939 2.707 0.598 0.649 nan 2.837 0.630 0.575 1.081 nan 0.763 nan nan 1.250 2.160 2.780 1.677 1.760 1.335 3.393 2.480 1.481 0.209 1.520 0.396 0.966 1.176 1.617 0.083 0.986 1.955 0.812 1406 chr5 72732670 72750511 + 0 NA TTS (NM_004472) TTS (NM_004472) 2762 NM_004472 2297 Hs.519385 NM_004472 ENSG00000251493 FOXD1 FKHL8|FREAC-4|FREAC4 forkhead box D1 protein-coding 2.116 nan 1.183 3.266 1.537 0.704 1.686 0.661 0.137 0.393 0.203 1.795 2.938 1.823 0.150 1.474 1.871 1.151 1.452 2.016 1.539 nan 2.838 0.440 0.513 0.799 nan 1.283 1.841 1.955 2.275 1.529 2.637 0.895 0.574 0.744 0.896 0.743 0.570 0.728 1.822 0.107 0.840 1.686 1.795 0.153 0.186 0.789 0.201 707 chr16 51177752 51187658 + 0 NA intron (NM_002968, intron 1 of 2) intron (NM_002968, intron 1 of 2) 1803 NM_001127892 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding nan nan nan 5.637 1.540 0.834 4.383 0.076 0.064 2.840 1.209 1.758 4.512 0.099 0.068 0.304 0.215 0.216 0.283 3.342 3.049 1.430 0.479 2.211 2.189 0.212 nan nan nan nan 0.110 0.231 0.327 0.114 0.058 5.940 9.141 nan 1.393 0.500 0.116 0.010 3.331 4.383 1.758 0.038 0.010 0.121 2.194 1612 chr7 125202493 125211257 + 0 NA Intergenic L1P3|LINE|L1 -302530 NR_110182 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 1.122 0.617 0.789 0.050 0.195 0.193 0.132 0.093 0.137 0.746 0.925 0.155 0.249 0.050 0.172 0.285 0.245 0.195 0.315 0.256 0.403 0.130 0.081 0.321 0.298 3.860 4.322 0.233 0.268 10.076 12.294 0.210 0.180 1.050 0.635 2.188 3.018 0.416 0.403 0.037 0.040 0.171 0.082 0.132 0.155 0.060 1.451 0.057 1.157 621 chr14 99810908 99825402 + 0 NA Intergenic Intergenic -80105 NM_022898 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IMD49|RIT1|ZNF856B|hRIT1-alpha B-cell CLL/lymphoma 11B protein-coding 1.244 0.475 0.696 0.074 0.216 0.207 0.341 0.094 0.078 0.043 0.061 0.083 0.275 0.060 0.078 0.298 0.258 0.128 0.114 0.518 0.514 0.128 0.067 0.169 0.175 5.145 5.064 0.250 0.336 1.675 1.468 0.186 0.223 0.090 0.188 0.333 0.567 0.340 0.608 0.097 0.110 0.046 1.358 0.341 0.083 0.698 0.021 0.034 0.263 1237 chr22 42931442 42937212 + 0 NA Intergenic AluJo|SINE|Alu -15541 NM_001284334 253190 Hs.728878 NM_014509 ENSG00000183569 SERHL2 dJ222E13.1 serine hydrolase-like 2 protein-coding 0.811 nan 0.830 1.624 0.468 0.225 0.136 0.050 0.143 0.753 0.171 0.554 0.504 0.094 0.169 0.428 0.488 0.327 0.567 0.297 0.338 4.902 1.305 0.175 0.201 0.280 nan 4.983 4.033 nan 0.196 0.307 0.354 1.345 1.276 0.196 0.642 1.033 0.774 0.263 0.760 0.129 0.136 0.554 9.020 0.069 0.108 812 chr17 69442987 69470881 + 0 NA Intergenic Intergenic -258614 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility candidate 17 (non-protein coding) ncRNA 0.838 nan 0.573 0.141 8.619 4.157 0.426 0.242 0.110 0.314 0.240 0.698 0.679 0.032 0.112 0.508 0.324 0.489 1.155 0.477 0.562 3.313 1.078 0.243 0.239 0.520 nan 0.592 0.547 0.497 0.196 0.231 0.342 0.543 0.869 0.135 0.231 1.024 0.579 0.035 0.251 0.090 0.076 0.426 0.698 0.045 0.045 0.119 0.040 1409 chr5 82103369 82110745 + 0 NA Intergenic L2a|LINE|L2 -28917 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 0.680 1.115 0.612 0.071 0.327 0.151 0.330 0.185 0.093 0.022 0.022 0.090 0.307 0.073 0.094 0.635 0.291 7.321 2.218 0.205 0.253 0.106 0.049 0.222 0.266 0.462 0.626 0.246 0.193 0.303 0.170 0.085 0.205 0.363 0.301 0.164 nan 0.269 0.306 0.015 0.132 0.052 0.010 0.330 0.090 0.056 0.015 0.067 954 chr19 39171602 39187654 + 0 NA intron (NM_001322033, intron 1 of 20) AluSx3|SINE|Alu 41372 NM_004924 81 Hs.270291 NM_004924 ENSG00000130402 ACTN4 ACTININ-4|FSGS|FSGS1 actinin alpha 4 protein-coding 1.831 1.744 1.411 1.112 1.020 0.466 0.772 1.842 0.500 0.565 0.147 0.365 3.518 0.210 0.114 0.473 0.816 2.115 7.059 0.685 0.986 2.493 0.611 1.766 1.894 0.945 1.520 1.223 1.654 nan 0.591 0.656 1.030 2.237 3.743 1.054 2.230 1.168 0.784 0.207 0.227 0.594 0.128 0.772 0.365 0.545 2.344 0.402 0.973 643 chr15 37166608 37199312 + 0 NA TTS (NM_170674) TTS (NM_170674) -4226 NR_024264 145845 Hs.302693 NM_001101327 LOC145845 - uncharacterized LOC145845 ncRNA 0.972 nan nan 0.064 0.299 0.172 0.297 0.313 0.044 0.316 0.314 0.056 0.286 2.466 0.109 0.529 1.163 0.610 0.536 0.269 0.304 0.359 0.159 0.229 0.238 0.841 1.030 0.219 0.256 0.741 0.351 0.606 1.015 2.722 2.146 1.330 2.345 0.661 0.522 0.029 0.074 0.941 0.153 0.297 0.056 0.021 0.034 0.660 0.994 339 chr11 47289533 47295551 + 0 NA intron (NR_120569, intron 2 of 2) intron (NR_120569, intron 2 of 2) 871 NM_130475 8567 Hs.82548 NM_003682 ENSG00000110514 MADD DENN|IG20|RAB3GEP MAP kinase activating death domain protein-coding 2.665 3.654 2.610 5.270 3.846 1.785 2.677 1.559 0.120 3.118 1.298 4.803 7.785 2.315 0.130 6.544 8.663 3.584 4.550 10.508 9.274 8.368 2.884 4.624 4.728 3.110 3.947 2.616 3.915 3.130 3.677 3.459 6.378 3.818 4.372 2.899 nan 3.021 1.329 3.538 7.637 1.316 2.094 2.677 4.803 1.411 2.833 3.390 1.460 68 chr1 41155844 41160158 + 0 NA promoter-TSS (NR_024567) promoter-TSS (NR_024567) -68 NR_024567 100130557 Hs.233458 NR_024567 NFYC-AS1 0808y08y NFYC antisense RNA 1 ncRNA 27.539 3.527 nan 3.499 4.758 2.417 4.158 2.540 0.333 2.531 1.416 7.409 10.069 4.285 0.245 5.834 5.292 6.923 10.031 9.270 9.306 4.703 3.236 11.652 12.781 6.190 nan 10.707 14.443 8.546 7.988 9.434 nan 3.758 3.876 7.135 6.616 3.300 1.413 4.005 3.368 0.728 3.695 4.158 7.409 1.354 1.883 3.834 2.235 1249 chr3 21429636 21436819 + 0 NA Intergenic AT_rich|Low_complexity|Low_complexity -13991 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 0.555 0.500 0.502 0.258 0.111 0.067 0.036 0.603 0.159 0.066 0.109 0.013 0.115 0.016 0.083 0.181 0.113 4.314 12.082 0.186 0.121 0.071 0.008 0.094 0.073 0.297 0.336 0.376 0.302 nan 0.130 0.034 0.202 0.064 0.022 0.087 0.180 0.051 0.111 0.008 0.087 0.026 0.036 0.013 0.169 0.014 1058 chr2 121790675 121799321 + 0 NA Intergenic HAL1|LINE|L1 240131 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 1.412 nan nan 0.106 0.200 0.166 0.241 0.080 0.074 0.059 0.152 0.186 2.096 0.038 0.065 0.491 0.428 0.202 0.405 0.459 0.693 0.964 0.259 0.587 0.587 0.469 1.008 4.319 4.929 1.245 1.652 0.278 0.374 0.984 0.713 0.208 0.339 1.121 0.773 9.311 1.522 0.383 0.192 0.241 0.186 0.621 0.106 0.205 0.128 636 chr15 31584199 31604666 + 0 NA Intergenic Intergenic -24626 NM_001302461 51621 Hs.376443 NM_015995 ENSG00000169926 KLF13 BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1 Kruppel like factor 13 protein-coding 1.521 nan nan 1.374 3.368 1.689 1.709 0.139 0.047 2.369 1.311 3.785 3.516 0.048 0.053 4.659 6.700 0.386 0.545 4.691 4.818 4.026 1.304 0.703 0.665 0.450 0.682 0.694 1.430 6.160 7.245 2.117 2.647 4.697 2.984 0.959 1.942 0.535 0.311 0.889 1.034 1.769 1.913 1.709 3.785 1.370 0.392 1.723 0.744 792 chr17 44437208 44454120 + 0 NA Intergenic Intergenic -4515 NR_033799 728806 Hs.735097 NR_033799 NSFP1 NSFP N-ethylmaleimide-sensitive factor pseudogene 1 pseudo 3.443 2.704 nan 1.492 4.452 2.303 0.975 0.522 0.216 1.910 1.057 3.256 3.883 1.081 0.069 1.762 1.577 2.624 3.315 1.442 nan 2.894 0.911 12.648 13.011 1.841 2.215 2.323 nan 3.636 3.509 1.573 2.526 4.025 5.405 3.049 4.386 3.150 1.602 0.872 2.921 1.336 0.769 0.975 3.256 0.471 2.021 1.064 1.250 1712 chr9 3464182 3482210 + 0 NA intron (NM_001282116, intron 1 of 16) intron (NM_001282116, intron 1 of 16) 16291 NM_001282117 5991 Hs.136829 NM_002919 ENSG00000080298 RFX3 - regulatory factor X3 protein-coding 0.942 1.806 1.520 0.165 0.808 0.291 0.405 0.348 0.125 0.733 0.661 0.222 0.434 0.216 0.082 0.393 0.340 1.325 2.163 0.475 0.566 1.722 0.531 0.331 0.298 3.462 4.240 0.389 0.386 0.466 0.198 0.225 0.451 2.422 3.627 0.382 nan 1.380 0.856 0.064 0.140 0.628 0.086 0.405 0.222 0.048 0.191 0.155 0.062 1452 chr6 6878180 6888591 + 0 NA Intergenic L2c|LINE|L2 -224445 NM_001168344 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 0.938 0.839 1.489 0.411 0.339 0.265 0.234 0.102 0.096 0.136 0.102 0.934 0.429 0.083 0.110 1.264 2.249 0.452 0.433 0.467 0.531 0.885 0.470 0.623 0.534 0.274 0.388 1.701 1.437 0.489 0.222 0.690 0.820 0.177 0.239 0.394 0.616 0.507 0.540 0.086 0.630 0.018 0.200 0.234 0.934 0.038 4.478 0.493 0.153 475 chr12 54467431 54482608 + 0 NA intron (NR_026658, intron 1 of 2) intron (NR_026658, intron 1 of 2) 588 NR_026658 100240735 Hs.635297 NR_026658 ENSG00000250654 LOC100240735 - uncharacterized LOC100240735 ncRNA nan 0.811 0.707 0.046 0.335 0.138 0.202 0.085 0.138 0.074 0.158 0.095 0.303 0.120 0.062 nan 9.994 2.911 3.246 0.266 nan 0.170 0.130 1.771 1.704 0.379 nan 0.492 nan 0.367 0.160 5.716 9.477 0.785 0.445 1.104 3.199 0.287 0.419 0.241 0.774 0.399 0.031 0.202 0.095 0.136 0.027 6.956 0.654 1194 chr21 30384375 30398391 + 0 NA intron (NM_001320724, intron 1 of 5) CpG 302 NM_016940 10069 Hs.713123 NM_016940 ENSG00000156253 RWDD2B C21orf6|GL011 RWD domain containing 2B protein-coding 2.863 1.829 2.811 1.855 1.780 0.949 1.553 1.150 0.371 0.650 0.412 1.758 4.935 1.687 0.136 2.885 2.964 2.225 3.486 2.475 2.179 2.388 1.089 4.627 5.047 2.562 3.264 3.289 4.410 5.122 5.144 1.667 2.383 2.538 2.929 2.526 3.320 nan 1.587 1.069 1.646 0.381 0.694 1.553 1.758 0.536 1.144 0.728 0.965 50 chr1 28968287 28976649 + 0 NA Intergenic AluSz|SINE|Alu -2644 NR_004407 26824 Hs.640266 NR_004407 ENSG00000270103 RNU11 RNU11-1|U11 RNA, U11 small nuclear snRNA 4.288 3.051 nan 5.982 3.843 1.606 3.200 2.033 0.617 1.835 1.155 1.735 7.999 3.300 0.172 7.100 7.043 5.590 7.890 8.897 8.656 5.862 3.979 11.988 13.068 5.675 6.569 5.502 8.111 7.821 7.841 6.235 6.894 3.259 3.545 6.560 8.521 3.802 2.093 4.597 3.627 0.363 1.347 3.200 1.735 1.054 1.948 2.121 2.863 749 chr17 17724080 17754638 + 0 NA intron (NM_001005291, intron 1 of 19) L2b|LINE|L2 966 NM_001005291 6720 Hs.592123 NM_004176 ENSG00000072310 SREBF1 SREBP-1c|SREBP1|SREBP1a|bHLHd1 sterol regulatory element binding transcription factor 1 protein-coding 3.940 1.996 3.028 2.005 5.407 2.728 2.133 1.159 0.216 0.958 0.501 1.299 2.676 1.637 0.054 1.805 2.994 1.601 nan 1.726 1.627 2.506 1.337 2.894 3.156 1.293 1.771 4.563 5.301 nan 2.149 1.257 2.454 1.664 0.936 2.570 5.384 0.847 0.427 1.806 3.151 0.524 0.707 2.133 1.299 0.920 3.526 1.682 2.362 1303 chr3 179369518 179374442 + 0 NA intron (NM_003940, intron 1 of 20) AluSx1|SINE|Alu 1047 NM_003940 8975 Hs.175322 NM_003940 ENSG00000058056 USP13 ISOT3|IsoT-3 ubiquitin specific peptidase 13 (isopeptidase T-3) protein-coding 5.746 3.237 4.363 3.814 2.588 1.609 3.301 2.986 0.588 2.998 1.860 3.648 10.794 1.656 0.083 3.545 3.995 4.843 5.963 6.636 5.722 12.893 4.848 4.053 4.076 3.872 5.241 4.051 7.173 6.578 7.613 1.744 4.203 4.582 4.519 7.875 6.618 2.648 1.567 2.025 3.523 1.273 2.083 3.301 3.648 0.791 1.151 0.950 3.381 110 chr1 109355817 109360161 + 0 NA TTS (NM_152763) TTS (NM_152763) 41737 NM_152763 254268 Hs.729441 NM_152763 ENSG00000162641 AKNAD1 C1orf62 AKNA domain containing 1 protein-coding 5.331 4.525 3.060 1.753 0.445 0.404 2.569 6.317 0.467 0.322 0.147 3.632 0.648 0.125 0.073 0.752 1.022 0.450 0.998 1.333 nan 9.800 9.842 0.324 0.368 6.109 6.635 nan nan 2.719 2.412 0.272 0.620 7.193 6.850 1.488 3.303 1.417 0.862 1.637 2.207 0.792 0.385 2.569 3.632 0.771 1.054 0.361 0.412 567 chr14 23387142 23389412 + 0 NA promoter-TSS (NR_120599) promoter-TSS (NR_120599) 119 NM_018107 55147 Hs.4997 NM_018107 ENSG00000100461 RBM23 CAPERbeta|PP239|RNPC4 RNA binding motif protein 23 protein-coding 10.766 4.464 4.051 11.231 8.055 4.606 3.624 4.024 1.529 2.544 1.304 5.121 16.961 4.597 0.236 3.293 3.397 8.959 13.888 11.059 8.502 10.979 8.534 0.343 0.276 7.705 7.745 7.869 11.460 12.594 11.648 5.543 7.610 10.749 11.344 6.855 6.084 4.160 2.586 6.725 5.915 1.457 4.241 3.624 5.121 6.272 5.439 1.653 2.237 457 chr12 26250010 26280294 + 0 NA Intergenic Intergenic 12851 NM_030762 79365 Hs.177841 NM_030762 ENSG00000123095 BHLHE41 BHLHB3|DEC2|SHARP1|hDEC2 basic helix-loop-helix family member e41 protein-coding nan nan nan 3.053 0.193 0.080 0.067 0.846 0.059 0.268 0.172 0.059 1.018 0.183 0.120 0.765 1.399 0.796 1.534 0.365 0.395 0.689 0.188 6.012 6.435 1.027 1.333 1.138 1.613 0.893 0.671 4.221 5.897 0.097 0.202 0.752 1.115 0.417 0.311 0.053 0.442 0.050 0.097 0.067 0.059 0.238 0.553 5.376 0.429 1508 chr6 107419021 107459108 + 0 NA Intergenic Intergenic -3428 NM_001080450 57673 Hs.418045 NM_001080450 ENSG00000178409 BEND3 KIAA1553 BEN domain containing 3 protein-coding 2.054 nan nan 1.282 1.218 0.688 1.249 0.162 0.133 0.376 0.197 0.919 1.872 0.849 0.134 9.049 10.499 0.798 0.930 1.341 nan 1.756 0.612 1.348 1.283 1.098 1.376 1.098 1.369 nan 1.882 0.514 1.157 1.781 1.410 1.385 1.583 0.877 0.534 0.928 1.031 0.526 0.593 1.249 0.919 0.352 0.751 0.409 0.537 1676 chr8 116659349 116681339 + 0 NA intron (NM_001282903, intron 1 of 6) intron (NM_001282903, intron 1 of 6) 9895 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding nan nan 1.840 0.143 0.279 0.117 0.069 0.474 0.146 0.185 0.115 0.088 0.581 0.085 0.078 0.405 0.378 0.501 0.597 1.077 1.058 nan 0.143 1.892 nan 3.954 nan 0.553 0.668 3.115 2.698 0.115 0.223 1.389 1.177 0.726 1.210 1.029 0.815 0.023 0.090 0.317 0.148 0.069 0.088 0.053 0.487 0.063 0.297 1417 chr5 92899710 92952426 + 0 NA intron (NM_005654, intron 2 of 2) intron (NM_005654, intron 2 of 2) 7025 NM_005654 7025 Hs.519445 NM_005654 ENSG00000175745 NR2F1 BBOAS|BBSOAS|COUP-TFI|EAR-3|EAR3|ERBAL3|NR2F2|SVP44|TCFCOUP1|TFCOUP1 nuclear receptor subfamily 2 group F member 1 protein-coding nan 9.108 2.728 0.217 0.541 0.294 5.684 0.818 0.109 0.247 0.210 0.002 1.519 6.618 0.176 0.272 0.179 1.128 1.032 0.817 0.613 3.090 1.252 0.203 0.209 1.214 1.617 0.588 0.591 0.554 0.340 0.115 0.173 12.244 8.347 0.205 nan 1.908 1.117 0.414 0.752 3.379 0.509 5.684 0.002 0.099 1.268 0.016 0.199 96 chr1 68138361 68168143 + 0 NA intron (NM_001199741, intron 2 of 2) intron (NM_001199741, intron 2 of 2) 2392 NM_001199742 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 3.175 1.656 nan 0.778 0.905 0.528 1.172 1.490 0.248 0.717 0.399 0.696 2.204 0.307 0.111 0.651 0.901 3.550 4.828 1.517 1.232 2.747 1.304 0.800 0.739 nan nan 2.352 nan 1.647 1.825 0.775 1.385 2.123 3.380 1.591 5.388 1.402 0.838 0.680 1.136 0.730 0.856 1.172 0.696 0.830 0.959 0.589 1.360 1211 chr21 45652844 45671570 + 0 NA Intergenic CpG-17318 -1320 NM_001283050 23308 Hs.14155 NM_015259 ENSG00000160223 ICOSLG B7-H2|B7H2|B7RP-1|B7RP1|CD275|GL50|ICOS-L|ICOSL|LICOS inducible T-cell costimulator ligand protein-coding nan 0.889 2.892 0.267 2.982 1.604 0.226 0.131 0.026 0.083 0.062 2.061 3.658 0.121 0.050 0.722 1.272 0.394 0.746 1.113 1.102 nan 0.495 0.730 0.625 0.106 nan 2.642 4.290 0.758 0.620 1.163 1.972 0.156 0.266 0.476 0.780 0.740 0.508 5.933 2.092 0.046 0.047 0.226 2.061 0.419 0.082 1.667 0.229 414 chr11 126973474 126978702 + 0 NA Intergenic Intergenic 39191 NR_120578 101929473 Hs.737523 NR_120578 ENSG00000255087 LOC101929473 - uncharacterized LOC101929473 ncRNA 1.057 4.185 2.174 4.658 9.608 4.803 7.088 0.005 0.031 0.536 0.289 8.867 11.739 0.085 0.085 1.776 2.300 0.157 0.390 13.047 12.102 9.861 2.432 0.158 0.116 0.184 0.353 10.526 10.076 3.319 3.350 2.420 4.241 6.284 4.672 0.378 nan 4.265 2.472 6.778 6.097 1.729 1.441 7.088 8.867 0.596 4.265 0.322 657 chr15 67036481 67073275 + 0 NA intron (NR_027654, intron 4 of 4) intron (NR_027654, intron 4 of 4) 60204 NM_005585 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 0.704 0.642 nan 0.102 0.305 0.145 0.388 2.168 0.333 0.089 0.081 0.316 0.857 0.138 0.083 0.319 0.353 2.383 7.056 0.396 0.454 nan 0.093 0.259 0.252 0.762 1.140 0.189 0.267 0.549 0.368 0.302 0.418 0.205 0.471 0.307 0.579 0.420 0.427 0.202 0.100 0.026 0.259 0.388 0.316 0.124 0.053 0.091 0.142 1204 chr21 37615653 37635971 + 0 NA intron (NM_005128, intron 22 of 36) AluSx|SINE|Alu -66675 NM_015358 23515 Hs.421150 NM_015358 ENSG00000159256 MORC3 NXP2|ZCW5|ZCWCC3 MORC family CW-type zinc finger 3 protein-coding 1.092 0.702 1.486 0.095 0.299 0.222 0.240 0.214 0.140 0.131 0.110 0.206 0.620 0.118 0.082 1.937 1.951 2.045 1.274 0.447 0.499 0.313 0.135 7.996 8.476 0.419 0.710 0.471 0.498 1.571 1.100 0.839 1.708 0.163 0.216 0.612 1.249 nan 0.540 0.123 0.231 0.009 0.247 0.240 0.206 0.081 0.090 0.767 0.584 697 chr16 29814971 29821904 + 0 NA exon (NM_001042539, exon 2 of 6) exon (NM_001042539, exon 2 of 6) 579 NM_002383 4150 Hs.23650 NM_002383 ENSG00000103495 MAZ PUR1|Pur-1|SAF-1|SAF-2|SAF-3|ZF87|ZNF801|Zif87 MYC associated zinc finger protein protein-coding 5.238 3.137 nan 7.282 6.019 3.023 6.638 1.348 0.138 1.810 1.115 7.724 14.741 4.807 0.133 4.892 5.918 3.866 5.516 7.005 6.514 nan 3.718 9.260 8.503 3.176 4.073 8.512 12.041 6.672 7.670 4.088 8.497 6.174 6.322 4.830 5.808 2.790 1.285 5.939 4.760 2.623 4.149 6.638 7.724 2.670 4.519 4.547 2.441 123 chr1 151680877 151694405 + 0 NA intron (NM_001172649, intron 1 of 11) intron (NM_001172649, intron 1 of 11) 1151 NM_001172648 11189 Hs.26047 NM_007185 ENSG00000159409 CELF3 BRUNOL1|CAGH4|ERDA4|ETR-1|TNRC4 CUGBP, Elav-like family member 3 protein-coding nan nan 1.499 0.485 0.642 0.383 4.075 0.213 0.107 0.716 0.416 1.155 4.421 0.101 0.123 1.007 1.441 0.196 0.309 4.046 nan 2.334 1.114 0.338 0.400 1.384 2.149 2.756 4.403 3.051 2.862 1.497 2.054 1.091 0.821 4.338 9.366 1.601 1.380 1.026 1.940 0.148 0.244 4.075 1.155 0.900 1.352 1.850 3.850 878 chr18 47806263 47815512 + 0 NA exon (NM_014593, exon 9 of 15) exon (NM_014593, exon 9 of 15) -2743 NM_001323952 4152 Hs.405610 NM_002384 ENSG00000141644 MBD1 CXXC3|PCM1|RFT methyl-CpG binding domain protein 1 protein-coding nan 2.008 2.900 3.395 2.710 1.698 4.064 0.909 0.139 1.053 0.489 3.288 5.941 1.220 0.097 3.340 3.874 3.651 5.038 6.633 5.962 8.312 3.438 3.965 4.150 1.394 1.832 3.294 3.515 2.827 2.476 2.165 3.414 4.389 6.062 1.822 nan 5.146 2.453 1.986 2.125 0.843 1.889 4.064 3.288 0.589 1.628 1.520 1.029 928 chr19 13075481 13088920 + 0 NA intron (NM_152654, intron 1 of 1) AluSx|SINE|Alu 1768 NM_152654 199699 Hs.331981 NM_152654 ENSG00000179284 DAND5 CER2|CERL2|CKTSF1B3|COCO|CRL2|DANTE|GREM3|SP1 DAN domain BMP antagonist family member 5 protein-coding 2.361 0.957 8.372 0.486 1.085 0.429 0.540 0.722 0.622 0.398 0.215 1.000 0.692 0.630 0.108 0.627 1.292 1.061 1.534 2.224 2.062 2.049 0.638 0.523 0.633 3.524 3.868 1.151 1.532 5.260 5.385 0.449 0.554 1.763 1.955 1.120 2.212 2.861 1.349 1.214 0.362 0.478 0.271 0.540 1.000 0.941 0.574 0.060 1.406 85 chr1 55514773 55534285 + 0 NA intron (NR_110451, intron 7 of 9) intron (NR_110451, intron 7 of 9) 18634 NR_110451 255738 Hs.18844 NM_174936 ENSG00000169174 PCSK9 FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9 proprotein convertase subtilisin/kexin type 9 protein-coding 1.602 1.930 4.229 0.138 0.282 0.123 0.249 0.160 0.082 0.153 0.159 0.092 5.894 0.096 0.101 0.311 0.331 0.245 0.469 0.689 0.791 0.542 0.158 0.445 0.450 0.442 1.018 0.442 0.804 1.270 1.526 0.265 0.277 0.348 0.324 0.408 nan 1.013 0.690 1.040 0.173 0.103 0.106 0.249 0.092 0.339 0.241 0.055 0.267 1394 chr5 56863392 56868521 + 0 NA promoter-TSS (NR_120607) promoter-TSS (NR_120607) -213 NR_120607 100996645 Hs.582496 NR_120607 LINCR-0003 - uncharacterized LincR-0003 ncRNA nan nan 0.655 0.035 0.158 0.125 0.051 0.162 0.157 0.007 0.094 0.023 0.245 0.227 0.110 0.562 0.644 10.078 9.376 0.187 0.178 nan 0.111 0.124 0.226 0.476 0.698 0.112 0.141 nan 0.190 0.092 0.116 0.065 0.074 0.202 0.305 0.737 0.520 0.011 0.085 0.074 0.078 0.051 0.023 0.038 0.020 0.019 0.024 1368 chr5 3590740 3599179 + 0 NA Intergenic CpG -1209 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 0.244 0.459 0.713 0.135 0.156 0.115 1.967 0.116 0.132 0.145 0.127 1.165 1.219 0.076 0.075 2.630 2.091 0.416 nan 6.929 5.950 0.051 0.028 0.033 0.048 0.065 0.189 nan 0.109 nan 11.801 1.821 5.188 0.029 0.071 0.067 0.044 0.102 nan 0.006 0.182 0.023 0.609 1.967 1.165 0.931 0.049 1.499 0.044 1782 chr9 139795311 139802002 + 0 NA intron (NM_021138, intron 4 of 10) FRAM|SINE|Alu 17471 NR_039697 100616480 NR_039697 ENSG00000266507 MIR4479 - microRNA 4479 ncRNA nan 0.755 1.564 0.310 0.404 0.171 0.325 2.068 0.293 0.142 0.110 0.215 1.776 0.274 0.092 0.272 0.318 1.330 3.107 1.076 1.160 nan 0.141 0.222 0.198 0.202 0.354 0.503 0.640 0.483 0.438 0.214 0.233 0.208 0.242 0.193 0.433 0.384 0.297 0.090 0.178 0.188 0.325 0.215 0.420 6.718 0.015 0.092 857 chr18 35011435 35033716 + 0 NA intron (NM_001025087, intron 2 of 12) intron (NM_001025087, intron 2 of 12) 23892 NR_132967 106635546 NR_132967 SNORA111 - small nucleolar RNA, H/ACA box 111 snoRNA nan 0.986 0.848 0.211 1.314 0.713 1.637 0.034 0.021 0.498 0.313 0.817 0.411 0.057 0.056 0.857 1.772 0.284 0.460 2.025 2.132 3.046 1.120 0.097 0.112 0.843 1.116 nan 1.257 0.912 0.983 0.257 0.364 1.902 1.375 0.462 0.684 3.551 2.303 0.649 0.242 0.655 0.309 1.637 0.817 0.481 0.136 0.125 0.182 470 chr12 52396574 52487841 + 0 NA intron (NM_001202234, intron 2 of 7) AluY|SINE|Alu -2979 NM_173157 3164 Hs.524430 NM_002135 ENSG00000123358 NR4A1 GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3 nuclear receptor subfamily 4 group A member 1 protein-coding nan 1.212 0.912 0.661 1.318 0.768 0.656 0.332 0.091 0.903 0.539 1.111 1.642 0.429 0.068 nan 3.569 1.452 1.839 2.464 nan 2.609 1.198 1.402 1.470 0.652 nan 1.894 nan 1.145 0.952 1.334 2.013 1.103 1.207 0.674 0.882 2.541 1.399 0.723 1.674 0.197 0.710 0.656 1.111 0.516 1.383 0.746 0.186 663 chr15 75742393 75749092 + 0 NA intron (NM_001145357, intron 1 of 20) CpG-8103 -1655 NM_001145358 25942 Hs.513039 NM_015477 ENSG00000169375 SIN3A WITKOS SIN3 transcription regulator family member A protein-coding 5.151 4.085 4.654 4.839 5.853 2.785 3.564 4.088 0.429 2.741 0.973 5.255 19.330 5.824 0.107 4.377 4.938 6.607 8.209 5.590 4.235 6.109 2.209 8.640 8.537 3.278 4.476 6.041 10.487 7.222 8.684 1.572 3.476 3.444 3.069 4.832 6.325 1.870 1.068 2.646 3.977 0.910 2.835 3.564 5.255 2.150 3.771 2.498 1.854 557 chr13 111765779 111776279 + 0 NA intron (NM_001113512, intron 1 of 17) intron (NM_001113512, intron 1 of 17) -3004 NR_046667 100874238 Hs.569218 NR_046667 ENSG00000235875 ARHGEF7-AS2 - ARHGEF7 antisense RNA 2 ncRNA 2.136 nan 3.346 1.851 1.312 0.823 3.015 0.203 0.061 0.446 0.303 5.649 2.670 0.145 0.088 0.600 0.392 2.095 1.486 5.933 5.100 1.103 0.409 0.205 0.284 0.048 0.067 4.708 6.312 0.398 0.247 0.930 1.566 0.471 0.584 0.148 0.212 0.659 0.400 1.288 1.839 0.173 1.978 3.015 5.649 0.351 1.639 0.370 0.065 1174 chr20 55944631 56078183 + 0 NA Intergenic Intergenic 44953 NM_001291780 55544 Hs.236361 NM_017495 ENSG00000132819 RBM38 HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2 RNA binding motif protein 38 protein-coding 1.357 1.507 1.082 0.747 0.534 0.296 0.521 0.313 0.124 0.277 0.192 0.433 0.977 0.216 0.093 5.685 nan 1.822 1.596 0.918 0.908 1.400 0.431 7.994 8.175 0.297 0.522 1.375 1.999 0.607 0.467 4.301 6.682 0.191 0.171 0.361 0.488 1.137 0.876 0.661 0.500 0.030 0.244 0.521 0.433 0.261 0.477 5.265 0.087 1510 chr6 109264001 109272138 + 0 NA intron (NM_032131, intron 12 of 17) Tigger15a|DNA|TcMar-Tigger -22763 NR_104137 101929716 NR_104137 ARMC2-AS1 - ARMC2 antisense RNA 1 ncRNA 3.419 nan nan 0.166 0.269 0.137 0.218 0.111 0.079 0.269 0.131 0.599 0.469 0.040 0.103 0.524 0.468 0.413 1.615 0.357 nan 1.232 0.632 0.248 0.308 5.629 5.784 2.194 3.855 nan 0.511 1.045 1.801 5.728 6.314 0.517 0.851 0.446 0.467 0.469 0.469 2.000 0.080 0.218 0.599 0.314 4.078 3.721 0.124 1230 chr22 37954906 37966019 + 0 NA intron (NM_152243, intron 1 of 2) intron (NM_152243, intron 1 of 2) 3991 NM_152243 11135 Hs.225356 NM_152243 ENSG00000128283 CDC42EP1 BORG5|CEP1|MSE55 CDC42 effector protein 1 protein-coding 1.210 nan 0.568 0.159 0.342 0.231 0.773 1.136 0.304 0.120 0.029 0.097 0.698 3.633 0.122 4.175 5.627 6.071 9.629 0.323 0.345 0.481 0.086 0.803 1.142 0.158 nan 0.177 0.340 nan 0.544 0.862 0.670 0.124 0.238 0.218 0.335 0.515 0.292 0.030 0.088 0.017 0.164 0.773 0.097 0.209 0.118 0.104 0.067 650 chr15 61306893 61313919 + 0 NA intron (NM_134261, intron 1 of 10) MamRep434|DNA|TcMar-Tigger 211096 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 0.609 0.898 nan 0.049 0.327 0.250 0.251 0.084 0.155 0.083 0.082 0.369 0.046 0.071 1.181 1.534 7.422 1.926 0.325 0.288 nan 0.047 0.177 0.134 0.106 0.195 0.280 0.270 0.545 0.306 0.395 0.588 0.070 0.080 0.239 0.504 0.345 0.298 0.016 0.012 0.034 0.251 0.082 0.046 0.082 0.125 0.122 71 chr1 43810993 43837295 + 0 NA promoter-TSS (NM_001255) promoter-TSS (NM_001255) -482 NM_001255 991 Hs.524947 NM_001255 ENSG00000117399 CDC20 CDC20A|bA276H19.3|p55CDC cell division cycle 20 protein-coding nan 1.745 nan 1.671 1.723 0.926 1.268 1.019 0.282 1.263 0.735 3.018 4.145 1.886 0.122 1.807 2.513 2.197 2.951 4.444 4.050 2.450 0.937 2.957 3.135 1.734 nan nan 11.154 1.608 1.400 1.890 nan 0.986 0.898 1.689 3.115 1.661 0.849 1.940 1.434 0.249 0.669 1.268 3.018 0.517 1.095 1.315 0.936 1585 chr7 57925778 57929435 + 0 NA Intergenic Intergenic 417723 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding nan 3.574 0.766 0.089 0.259 0.209 0.528 0.160 0.048 0.202 5.334 1.203 3.736 0.245 11.307 15.416 0.117 0.202 0.302 0.275 0.938 0.362 0.216 0.220 0.183 0.370 0.373 0.379 0.881 0.864 1.432 2.630 0.126 0.227 0.523 0.507 0.214 0.148 0.007 0.048 0.128 0.528 5.334 0.052 0.071 0.273 0.026 262 chr10 18937889 18951010 + 0 NA Intergenic Intergenic -3864 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding nan 1.889 1.788 2.500 2.504 1.225 0.795 3.716 0.293 0.993 0.592 2.784 2.883 1.768 0.103 3.820 3.674 3.393 5.017 3.341 2.815 8.731 4.641 5.346 5.370 2.613 3.191 2.915 4.744 1.992 2.074 1.345 2.522 1.817 2.050 2.772 3.572 1.587 0.815 0.747 0.692 0.181 1.271 0.795 2.784 0.312 1.315 1.019 1.018 1784 chrX 12988069 13008308 + 0 NA Intergenic Intergenic 4962 NM_021109 7114 Hs.437277 NM_021109 ENSG00000205542 TMSB4X FX|PTMB4|TB4X|TMSB4 thymosin beta 4, X-linked protein-coding 1.663 nan 1.694 2.269 2.172 0.998 0.593 2.011 0.167 0.317 0.189 1.508 5.237 2.871 0.080 0.446 0.470 1.459 3.023 2.548 1.967 6.612 2.503 1.037 1.008 1.481 1.853 2.286 2.553 2.122 2.268 0.646 1.017 2.120 2.015 1.070 1.864 1.344 0.791 0.455 0.273 0.381 0.506 0.593 1.508 0.454 1.354 0.356 0.293 1496 chr6 45572239 45600802 + 0 NA Intergenic Intergenic 196206 NM_001278478 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA runt related transcription factor 2 protein-coding 1.680 0.979 0.862 0.153 0.676 0.275 0.286 1.276 0.214 0.120 0.128 0.223 0.454 0.042 0.134 1.903 1.246 3.218 7.945 0.302 0.311 0.120 0.073 1.331 1.325 0.139 0.248 0.561 nan 0.535 0.304 2.210 2.902 0.091 0.116 0.455 1.237 0.737 0.641 0.086 0.062 0.010 0.074 0.286 0.223 0.007 0.057 1.624 0.450 538 chr13 72356916 72378951 + 0 NA intron (NM_080760, intron 2 of 8) AluJo|SINE|Alu 73397 NM_080760 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding nan 1.080 1.144 0.084 0.514 0.288 0.905 0.051 0.103 0.092 0.113 0.136 0.333 0.039 0.077 0.671 0.688 0.199 0.341 1.328 1.802 nan 0.151 0.110 0.122 0.686 0.838 0.252 0.256 nan 1.537 0.229 0.382 0.489 0.917 2.642 nan 0.188 0.188 0.028 0.144 0.225 0.237 0.905 0.136 0.392 0.023 0.081 1.335 433 chr12 6975737 6983903 + 0 NA TTS (NM_001146316) TTS (NM_001146316) 2542 NM_001258026 7167 Hs.524219 NM_000365 ENSG00000111669 TPI1 HEL-S-49|TIM|TPI|TPID triosephosphate isomerase 1 protein-coding 3.466 nan nan 5.960 2.981 1.549 2.948 0.781 0.120 1.559 1.170 2.745 8.796 4.128 0.157 1.412 2.193 3.526 4.570 nan 7.435 7.924 2.699 3.816 4.129 2.900 4.144 3.193 3.775 3.181 4.463 1.439 3.736 2.934 2.089 2.497 5.546 1.334 0.518 2.407 3.891 0.619 3.063 2.948 2.745 5.020 0.917 1.398 2.126 1179 chr20 60807138 60832536 + 0 NA intron (NM_014835, intron 1 of 13) intron (NM_014835, intron 1 of 13) 6296 NM_014835 9885 Hs.473254 NM_014835 ENSG00000130703 OSBPL2 DFNA67|DNFA67|ORP-2|ORP2 oxysterol binding protein like 2 protein-coding 1.051 1.974 1.270 0.643 0.489 0.356 0.821 0.217 0.121 0.321 0.260 0.425 11.313 0.227 0.130 1.323 nan 0.452 0.592 0.963 0.961 1.197 0.514 1.643 1.521 0.708 0.986 1.219 1.613 0.683 0.520 0.652 0.991 0.185 0.255 0.452 0.683 1.258 0.797 0.656 3.670 0.042 0.314 0.821 0.425 0.073 0.962 0.258 0.160 1263 chr3 71347623 71360206 + 0 NA promoter-TSS (NM_001244812) promoter-TSS (NM_001244812) -3 NM_001244812 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 1.669 0.756 1.901 0.294 0.649 0.448 0.264 0.077 0.039 0.474 0.204 0.983 0.500 0.060 0.075 1.274 0.940 3.845 nan 0.784 0.876 0.805 0.451 1.314 1.282 0.087 0.154 0.953 1.453 11.655 10.938 0.362 0.855 0.273 0.277 0.283 nan 0.677 0.449 0.036 0.213 0.068 1.313 0.264 0.983 0.285 0.113 0.226 0.255 1314 chr3 187454104 187469788 + 0 NA intron (NM_001706, intron 1 of 9) intron (NM_001706, intron 1 of 9) 1567 NM_001706 604 Hs.478588 NM_001706 ENSG00000113916 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 B-cell CLL/lymphoma 6 protein-coding 2.166 4.320 2.113 2.567 3.284 1.319 1.164 3.988 0.310 0.642 0.432 1.933 11.329 2.363 0.126 0.626 0.589 3.484 7.171 6.066 4.846 0.622 0.328 3.765 4.117 2.325 3.235 5.269 8.431 2.780 2.306 0.919 1.367 0.330 0.441 0.288 0.435 1.891 1.189 5.123 1.147 0.043 0.804 1.164 1.933 0.201 1.329 0.163 0.150 1308 chr3 181522458 181527683 + 0 NA Intergenic L1MB8|LINE|L1 95358 NM_003106 6657 Hs.518438 NM_003106 ENSG00000181449 SOX2 ANOP3|MCOPS3 SRY-box 2 protein-coding 0.815 0.984 0.593 0.273 0.489 0.222 0.245 0.058 0.280 0.240 0.243 0.160 0.418 0.315 0.104 0.250 0.267 0.203 0.248 0.451 0.493 12.726 3.356 0.134 0.105 0.534 0.775 0.719 0.806 0.667 0.259 0.184 0.297 0.174 0.219 0.109 0.259 0.458 0.584 0.021 0.153 0.037 0.091 0.245 0.160 0.037 0.039 0.117 614 chr14 89762720 89773481 + 0 NA intron (NM_001085471, intron 3 of 6) AluSg4|SINE|Alu 115354 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 1.847 2.482 nan 3.215 0.979 0.439 1.107 1.688 0.179 1.730 0.577 2.941 8.259 0.090 0.142 0.280 0.193 0.704 0.548 5.346 4.193 1.616 1.951 0.421 0.459 1.425 1.994 5.289 11.284 0.766 0.420 0.120 0.198 0.475 0.553 0.295 0.454 nan 2.571 5.191 2.991 0.142 0.148 1.107 2.941 0.022 0.969 0.073 0.093 1328 chr4 38312086 38322290 + 0 NA Intergenic MLT1B|LTR|ERVL-MaLR 195613 NM_001253915 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 1.099 2.320 1.412 3.085 5.605 2.707 0.597 0.830 0.175 1.191 0.518 2.932 2.150 0.115 0.089 0.447 0.384 0.722 1.371 2.808 2.935 0.824 0.179 0.520 0.493 0.909 1.264 6.579 3.340 0.887 0.382 0.378 0.559 1.020 1.230 0.139 0.166 3.177 1.718 0.548 3.879 0.158 0.369 0.597 2.932 0.195 0.189 0.166 0.097 293 chr11 529049 540876 + 0 NA intron (NM_176795, intron 1 of 5) CpG 605 NM_001130442 3265 Hs.37003 NM_005343 ENSG00000174775 HRAS C-BAS/HAS|C-H-RAS|C-HA-RAS1|CTLO|H-RASIDX|HAMSV|HRAS1|RASH1|p21ras HRas proto-oncogene, GTPase protein-coding 1.485 3.010 2.208 1.067 1.395 0.609 0.940 0.328 0.122 1.027 0.569 2.807 3.734 0.871 0.052 5.139 7.287 1.877 2.580 2.606 2.540 2.374 0.985 2.682 2.628 0.796 1.268 1.406 2.281 1.235 1.156 2.527 4.023 2.266 2.146 1.143 1.233 1.209 0.771 1.047 2.153 0.526 0.282 0.940 2.807 0.404 0.523 1.609 0.444 410 chr11 126666607 126702110 + 0 NA intron (NM_032531, intron 1 of 16) L1PA11|LINE|L1 -126284 NR_046986 100874251 Hs.319053 NR_046986 ENSG00000254960 KIRREL3-AS2 - KIRREL3 antisense RNA 2 ncRNA 0.644 1.226 0.740 1.433 0.679 0.253 0.617 0.040 0.058 0.548 0.281 1.652 2.081 0.051 0.092 0.635 0.595 0.181 0.273 1.938 2.368 2.036 0.524 0.126 0.128 0.195 0.372 2.209 2.083 0.458 0.283 0.645 1.024 0.319 0.388 0.351 nan 2.463 1.416 0.781 0.685 0.051 0.152 0.617 1.652 0.136 0.042 0.466 0.195 1309 chr3 181552851 181640068 + 0 NA Intergenic Intergenic -73693 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 0.965 1.351 0.793 0.336 1.194 0.620 0.189 0.130 0.150 0.429 0.355 0.312 0.662 2.618 0.140 0.298 0.218 0.243 0.440 0.534 0.657 5.202 1.694 0.115 0.131 0.743 1.102 0.705 0.735 0.631 0.320 0.169 0.235 0.847 0.952 0.127 0.226 1.115 0.715 0.209 0.261 0.283 0.446 0.189 0.312 0.120 0.106 0.063 0.047 921 chr19 10340726 10353966 + 0 NA Intergenic Intergenic -5398 NM_004230 9294 Hs.655405 NM_004230 ENSG00000267534 S1PR2 AGR16|DFNB68|EDG-5|EDG5|Gpcr13|H218|LPB2|S1P2 sphingosine-1-phosphate receptor 2 protein-coding 1.523 2.268 1.775 0.888 4.190 2.214 0.523 0.390 0.291 0.871 0.475 2.131 3.029 0.802 0.068 1.332 1.831 0.712 1.117 3.209 2.791 3.989 1.368 1.465 1.565 1.336 1.673 2.186 3.759 0.645 0.447 0.907 1.279 1.243 1.165 0.884 1.624 3.448 1.432 0.866 1.143 0.202 0.179 0.523 2.131 0.521 1.674 0.882 0.357 632 chr14 105930839 105954748 + 0 NA promoter-TSS (NR_073085) promoter-TSS (NR_073085) 597 NR_073084 1397 Hs.534309 NM_001312 ENSG00000182809 CRIP2 CRIP|CRP2|ESP1 cysteine rich protein 2 protein-coding 5.261 2.997 4.115 2.413 2.147 1.202 3.440 0.574 0.181 1.945 0.849 5.477 8.147 2.577 0.109 2.148 4.648 1.005 1.945 5.754 5.629 3.941 3.414 0.594 0.519 2.393 3.730 3.059 6.714 1.473 1.496 0.973 1.787 3.730 1.936 0.562 0.399 0.641 0.370 10.244 1.471 1.030 0.792 3.440 5.477 0.825 1.561 0.672 0.062 724 chr16 90054259 90067899 + 0 NA intron (NR_003228, intron 10 of 12) intron (NR_003228, intron 10 of 12) 15450 NM_024043 79007 Hs.301394 NM_024043 ENSG00000003249 DBNDD1 - dysbindin domain containing 1 protein-coding nan nan nan 0.595 0.780 0.306 1.433 0.325 0.070 0.173 0.118 0.492 0.580 0.795 0.090 nan 0.756 1.593 2.506 0.716 0.691 5.578 0.780 nan 6.791 0.464 nan 0.618 1.306 nan 0.637 0.426 0.378 1.414 6.179 2.185 1.090 nan 0.765 0.257 0.305 0.091 0.476 1.433 0.492 0.532 0.957 0.102 0.164 886 chr18 53195061 53225285 + 0 NA intron (NM_001330604, intron 3 of 19) intron (NM_001330604, intron 3 of 19) -32173 NM_001243231 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding nan 0.868 0.905 0.162 0.336 0.186 0.315 0.156 0.049 0.394 0.281 0.288 0.550 0.449 0.095 0.750 0.596 4.699 2.732 0.939 1.081 4.246 1.474 2.345 2.339 0.856 1.026 0.493 0.515 0.528 0.301 0.443 0.772 3.885 4.181 0.351 0.652 nan 1.011 0.101 0.313 0.777 0.144 0.315 0.288 0.013 0.833 0.419 0.201 1185 chr20 62251750 62261158 + 0 NA intron (NM_012384, intron 1 of 9) intron (NM_012384, intron 1 of 9) 2000 NM_012384 26205 Hs.473286 NM_012384 ENSG00000101216 GMEB2 GMEB-2|P79PIF|PIF79 glucocorticoid modulatory element binding protein 2 protein-coding 3.700 3.285 3.079 2.717 2.224 1.522 3.777 2.039 0.362 1.766 0.815 4.152 3.854 2.492 0.162 4.698 nan 2.398 2.921 4.161 4.130 4.773 1.847 12.550 12.513 2.831 4.020 3.159 5.040 4.833 5.217 2.881 4.972 1.685 1.756 3.498 4.839 2.479 1.399 2.489 2.763 0.428 1.254 3.777 4.152 0.906 3.861 1.253 1.431 698 chr16 29826669 29838631 + 0 NA 3' UTR (NM_024516, exon 3 of 3) 3' UTR (NM_024516, exon 3 of 3) 935 NM_005115 9961 Hs.632177 NM_005115 ENSG00000013364 MVP LRP|VAULT1 major vault protein protein-coding 3.744 1.767 nan 2.361 2.653 1.369 1.835 1.124 0.269 0.641 0.466 2.125 6.703 1.582 0.110 1.771 2.210 1.419 2.126 3.054 2.561 nan 2.368 3.234 3.596 4.191 5.119 5.083 6.620 7.029 6.190 1.540 2.233 3.660 5.388 3.792 7.257 1.857 0.840 2.681 1.535 1.413 1.579 1.835 2.125 1.793 1.917 0.986 2.646 1325 chr4 15470251 15498866 + 0 NA TTS (NM_001164720) TTS (NM_001164720) 13069 NM_020785 57545 Hs.590928 NM_020785 ENSG00000048342 CC2D2A JBTS9|MKS6 coiled-coil and C2 domain containing 2A protein-coding nan nan nan 0.256 0.131 0.073 0.405 1.670 0.190 0.203 0.184 0.205 0.509 0.049 0.075 0.427 0.259 0.613 0.561 0.486 0.511 1.004 0.442 0.546 0.499 1.101 1.474 0.371 0.435 1.594 1.351 0.360 0.419 0.214 0.262 1.170 4.604 nan 0.633 0.096 0.139 0.029 0.116 0.405 0.205 0.038 0.110 0.108 1.755 1259 chr3 52048952 52098063 + 0 NA Intergenic Intergenic 16954 NM_001947 1849 Hs.591664 NM_001947 ENSG00000164086 DUSP7 MKPX|PYST2 dual specificity phosphatase 7 protein-coding 1.194 1.324 nan 0.257 0.371 0.225 0.365 0.290 0.063 0.358 0.201 0.310 0.929 0.178 0.057 0.846 1.265 0.847 1.185 1.120 1.150 1.316 0.433 0.588 0.633 0.537 0.870 0.688 1.053 nan 3.771 0.645 0.921 0.845 0.786 1.291 3.144 1.314 0.649 0.293 0.529 0.194 0.313 0.365 0.310 0.461 0.808 0.284 1.278 522 chr12 133531026 133534110 + 0 NA intron (NM_183238, intron 1 of 4) C-rich|Low_complexity|Low_complexity 300 NM_183238 100289635 Hs.29698 NM_183238 ENSG00000196458 ZNF605 - zinc finger protein 605 protein-coding 2.238 1.244 1.489 1.568 1.880 0.677 1.842 0.707 0.103 1.473 0.670 2.469 3.849 3.769 0.147 0.315 0.661 0.348 0.372 3.186 2.594 3.651 1.300 4.959 4.873 0.796 1.367 nan 3.969 1.917 2.414 1.247 1.817 1.367 0.862 1.747 2.376 0.143 0.174 2.421 0.551 0.217 12.570 1.842 2.469 0.712 1.976 0.805 1.248 926 chr19 13043309 13051299 + 0 NA Intergenic AluJr|SINE|Alu -2110 NM_004343 811 Hs.515162 NM_004343 ENSG00000179218 CALR CRT|HEL-S-99n|RO|SSA|cC1qR calreticulin protein-coding 5.151 2.697 5.568 3.075 5.196 2.728 3.233 1.699 0.202 1.571 0.815 4.027 4.362 2.070 0.098 3.068 3.399 3.053 5.275 6.585 6.752 8.822 4.043 5.268 5.335 3.705 5.023 6.256 10.146 9.131 9.418 2.013 4.032 4.764 5.649 8.713 8.836 4.604 2.022 9.184 2.823 1.158 1.055 3.233 4.027 1.316 2.431 0.985 4.074 1607 chr7 115300995 115325259 + 0 NA Intergenic Intergenic 295240 NM_001244583 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding nan 0.705 0.997 0.127 0.257 0.145 0.642 0.279 0.139 0.284 0.349 0.246 0.268 0.077 0.174 0.405 0.294 0.300 0.706 0.195 0.240 0.129 0.101 0.251 0.246 0.402 0.555 0.426 0.395 0.542 0.223 0.225 0.338 11.894 14.013 0.327 0.857 0.653 0.675 0.060 0.423 3.465 0.047 0.642 0.246 0.032 0.397 0.069 0.102 373 chr11 72446685 72464121 + 0 NA intron (NM_001040118, intron 1 of 34) MIR3|SINE|MIR 8031 NM_001040118 116985 Hs.503165 NM_015242 ENSG00000186635 ARAP1 CENTD2 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 protein-coding nan 1.233 1.360 0.448 0.785 0.405 0.308 0.455 0.048 0.198 0.122 0.662 1.762 0.510 0.112 2.084 4.361 1.000 0.970 1.690 1.871 1.117 0.501 2.764 2.987 0.628 1.165 1.770 2.476 1.197 1.260 1.909 2.451 0.504 0.646 0.913 1.962 0.808 0.569 0.466 0.791 0.093 0.188 0.308 0.662 0.138 0.669 0.813 0.475 40 chr1 17989012 18015365 + 0 NA intron (NM_001319838, intron 15 of 17) intron (NM_001319838, intron 15 of 17) 57380 NM_001328124 55160 Hs.443460 NM_018125 ENSG00000074964 ARHGEF10L GrinchGEF Rho guanine nucleotide exchange factor 10 like protein-coding 0.966 0.722 nan 0.037 0.402 0.214 0.439 0.123 0.049 0.117 0.109 0.176 1.158 0.082 0.100 1.746 2.836 0.806 0.517 0.844 0.756 0.427 0.157 0.556 nan 0.927 nan 0.288 0.615 nan 1.739 0.682 1.281 0.071 0.088 0.330 0.560 0.923 0.631 2.580 0.208 0.011 0.142 0.439 0.176 0.360 0.062 1.119 0.070 1076 chr2 171778064 171788384 + 0 NA Intergenic AluJb|SINE|Alu -1724 NM_001201428 26003 Hs.431317 NM_015530 ENSG00000115806 GORASP2 GOLPH6|GRASP55|GRS2|p59 golgi reassembly stacking protein 2 protein-coding 2.665 2.498 3.600 3.122 1.945 1.178 1.293 0.870 0.124 1.090 0.669 1.670 3.779 1.419 0.087 2.160 2.439 2.680 3.696 2.484 2.376 4.537 1.769 10.314 10.634 1.626 2.334 7.648 10.352 2.793 3.399 1.938 2.771 1.573 1.719 3.621 4.033 1.651 0.872 1.793 0.915 0.147 0.751 1.293 1.670 0.480 0.662 0.808 0.890 1633 chr8 37739913 37763940 + 0 NA intron (NM_001002814, intron 1 of 5) intron (NM_001002814, intron 1 of 5) 5089 NM_001002814 80223 Hs.191179 NM_025151 ENSG00000156675 RAB11FIP1 NOEL1A|RCP|rab11-FIP1 RAB11 family interacting protein 1 protein-coding 1.338 2.780 nan 3.954 0.834 0.446 1.564 0.228 0.116 0.679 0.304 1.324 1.386 0.727 0.118 0.930 1.206 1.437 3.990 1.177 1.160 2.730 1.472 0.772 0.807 0.412 0.704 2.528 3.594 0.615 0.476 0.419 0.660 1.083 1.626 0.633 1.074 1.843 1.287 0.221 1.245 0.211 0.118 1.564 1.324 0.089 0.300 0.178 0.173 1731 chr9 36861879 36873739 + 0 NA intron (NM_001280549, intron 6 of 7) intron (NM_001280549, intron 6 of 7) -3504 NR_039766 100616278 NR_039766 ENSG00000264922 MIR4540 - microRNA 4540 ncRNA 0.874 nan 1.121 0.611 1.991 0.871 0.312 0.070 0.014 0.715 0.314 1.021 2.639 0.018 0.067 0.654 1.039 0.178 0.268 1.679 2.000 2.546 0.624 0.165 0.200 0.473 0.974 1.105 1.148 0.631 0.665 0.820 1.276 2.272 1.924 0.266 0.444 3.724 1.973 1.360 0.331 0.838 0.179 0.312 1.021 0.187 0.540 0.492 0.136 1262 chr3 71074869 71116153 + 0 NA intron (NM_032682, intron 10 of 20) intron (NM_032682, intron 10 of 20) 18563 NM_001244813 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 0.879 0.628 1.591 0.891 0.751 0.369 0.319 0.345 0.039 0.672 0.351 0.642 1.033 0.031 0.067 0.301 0.226 1.937 nan 0.669 0.713 0.937 0.500 0.177 0.189 0.443 0.688 0.925 1.755 1.153 0.987 0.184 0.438 0.837 1.621 0.218 nan 0.835 0.522 0.038 0.360 0.188 0.235 0.319 0.642 0.087 0.644 0.110 0.117 824 chr17 76773535 76788866 + 0 NA Intergenic AluSx|SINE|Alu -2776 NM_004762 9267 Hs.191215 NM_004762 ENSG00000108669 CYTH1 B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7 cytohesin 1 protein-coding 2.639 1.825 2.643 1.142 1.510 0.696 0.849 1.550 0.650 0.604 0.464 1.807 3.531 0.919 0.099 1.395 1.641 1.432 1.846 1.838 1.547 1.718 0.534 1.624 1.542 nan 2.203 1.650 2.631 5.069 4.042 0.610 1.068 0.652 0.794 2.368 6.694 nan 0.854 0.621 1.186 0.118 0.459 0.849 1.807 0.265 1.072 0.238 2.841 1485 chr6 36275727 36318268 + 0 NA intron (NM_001010903, intron 2 of 11) intron (NM_001010903, intron 2 of 11) 7665 NM_001010903 389384 Hs.162104 NM_001010903 ENSG00000189325 C6orf222 - chromosome 6 open reading frame 222 protein-coding nan 0.932 nan 0.586 0.439 0.196 0.821 0.087 0.068 0.327 0.166 0.648 0.888 0.100 0.107 3.488 4.403 3.452 nan nan 0.702 1.632 0.535 1.732 1.812 0.225 0.445 2.871 2.876 0.546 0.386 1.404 2.126 0.579 0.804 0.357 0.561 1.685 1.105 0.756 0.809 0.117 0.569 0.821 0.648 0.129 0.831 1.352 0.098 432 chr12 6944904 6963657 + 0 NA intron (NM_002075, intron 8 of 9) L1MC4|LINE|L1 4262 NM_002075 2784 Hs.631657 NM_002075 ENSG00000111664 GNB3 CSNB1H G protein subunit beta 3 protein-coding 2.390 nan nan 2.385 1.294 0.753 0.703 0.228 0.077 0.740 0.387 1.223 3.673 1.001 0.122 0.655 1.021 1.538 1.995 nan 3.303 3.513 1.401 3.214 3.382 1.272 2.052 1.527 1.796 2.765 2.188 0.775 0.985 1.133 1.418 2.262 9.424 0.619 0.369 1.073 1.760 0.274 1.230 0.703 1.223 2.694 0.331 0.517 3.301 239 chr1 245965591 245978002 + 0 NA intron (NM_001167740, intron 10 of 11) intron (NM_001167740, intron 10 of 11) 608918 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding nan 3.278 nan 0.613 2.409 1.156 0.628 0.239 0.207 0.603 0.477 0.868 2.235 0.069 0.107 1.759 2.128 3.027 2.113 0.996 1.009 7.855 1.962 2.243 2.188 0.513 0.820 2.125 3.127 1.926 2.225 1.821 2.638 0.432 0.399 0.613 1.290 0.735 0.738 1.580 1.960 0.046 0.123 0.628 0.868 0.650 0.115 4.111 0.460 969 chr19 46270325 46287514 + 0 NA intron (NM_001081560, intron 8 of 14) AluSz|SINE|Alu 3958 NM_001288765 1760 Hs.631596 NM_004409 ENSG00000104936 DMPK DM|DM1|DM1PK|DMK|MDPK|MT-PK dystrophia myotonica protein kinase protein-coding 1.938 1.032 4.386 3.139 2.265 1.137 0.768 1.323 0.226 2.257 0.849 3.583 2.818 2.626 0.123 0.661 1.059 1.138 1.658 5.625 5.662 3.570 0.723 3.999 4.030 1.270 1.991 5.362 5.247 0.918 0.900 0.439 0.727 1.660 1.614 1.022 1.705 2.442 1.266 3.268 2.766 0.353 0.542 0.768 3.583 0.308 1.816 0.212 0.360 1461 chr6 15242374 15250271 + 0 NA 5' UTR (NM_004973, exon 1 of 18) 5' UTR (NM_004973, exon 1 of 18) 116 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 5.048 nan 4.090 4.027 2.411 1.420 3.348 1.812 0.468 1.277 0.623 5.170 2.878 2.923 0.190 2.200 4.052 10.610 10.197 5.449 4.439 4.338 1.493 5.918 5.479 2.817 3.606 3.704 5.126 8.520 11.446 2.014 4.739 3.752 3.158 3.632 6.076 1.566 0.947 1.179 4.463 0.955 2.571 3.348 5.170 1.454 1.662 2.104 2.644 1229 chr22 37928855 37942841 + 0 NA Intergenic MLT1D|LTR|ERVL-MaLR -20623 NM_152243 11135 Hs.225356 NM_152243 ENSG00000128283 CDC42EP1 BORG5|CEP1|MSE55 CDC42 effector protein 1 protein-coding 1.578 nan 0.581 0.088 0.336 0.206 0.412 0.529 0.229 0.078 0.095 0.215 0.553 0.319 0.119 1.197 1.515 2.891 6.485 0.424 0.480 0.264 0.090 0.320 0.372 0.332 nan 0.279 0.306 nan 1.603 0.458 0.520 0.104 0.175 0.250 0.491 0.483 0.451 0.072 0.121 0.014 0.608 0.412 0.215 0.528 0.199 0.178 0.062 311 chr11 12843540 12870266 + 0 NA intron (NM_021961, intron 3 of 12) (TTGG)n|Simple_repeat|Simple_repeat 154192 NR_038904 100506305 Hs.153408 NR_038904 ENSG00000251381 LINC00958 - long intergenic non-protein coding RNA 958 ncRNA 1.318 nan 1.884 1.996 2.745 1.440 2.538 1.753 0.181 1.678 0.944 3.382 4.524 0.248 0.110 nan 3.873 2.078 2.459 4.023 4.210 4.736 1.627 1.069 1.159 2.219 nan 2.577 3.552 1.077 1.018 1.499 3.037 4.068 4.579 1.117 3.896 2.814 nan 3.901 4.138 1.538 0.499 2.538 3.382 0.230 0.381 3.159 0.853 784 chr17 40681603 40690564 + 0 NA Intergenic Intergenic -1868 NM_000263 4669 Hs.50727 NM_000263 ENSG00000108784 NAGLU CMT2V|MPS-IIIB|MPS3B|NAG|UFHSD N-acetyl-alpha-glucosaminidase protein-coding 3.812 3.028 nan 3.599 2.349 1.036 2.044 2.693 0.411 1.621 0.807 2.740 4.110 1.041 0.124 2.598 3.191 1.500 2.813 2.786 nan 4.009 1.436 4.462 4.178 1.692 2.430 4.793 nan 7.213 7.880 1.370 2.312 4.248 3.729 3.275 4.687 2.420 1.205 1.956 2.264 1.119 1.097 2.044 2.740 0.691 2.948 1.018 2.035 750 chr17 17776334 17796507 + 0 NA intron (NM_001288787, intron 4 of 13) intron (NM_001288787, intron 4 of 13) -46095 NM_004176 6720 Hs.592123 NM_004176 ENSG00000072310 SREBF1 SREBP-1c|SREBP1|SREBP1a|bHLHd1 sterol regulatory element binding transcription factor 1 protein-coding 1.481 1.335 1.670 0.261 0.518 0.288 0.452 0.430 0.096 0.217 0.134 0.192 1.091 0.060 0.040 0.741 1.748 0.315 nan 0.626 0.759 0.949 0.390 0.266 0.267 0.448 0.845 1.356 1.704 nan 1.398 0.282 0.421 0.297 0.315 0.718 1.359 0.516 0.362 2.826 0.881 0.114 0.780 0.452 0.192 0.240 0.399 0.089 0.683 370 chr11 67387176 67399892 + 0 NA Intergenic HERV9-int|LTR|ERV1 3874 NM_001243750 254552 Hs.433329 NM_181843 ENSG00000167799 NUDT8 - nudix hydrolase 8 protein-coding nan 1.103 1.060 0.855 0.521 0.366 0.465 0.176 0.179 0.222 0.062 0.339 2.540 0.492 0.112 1.202 1.521 1.524 2.141 1.716 1.330 1.688 0.534 1.564 1.654 0.402 0.797 2.029 2.813 0.604 0.587 1.251 1.870 0.304 0.292 0.565 0.806 0.467 0.366 0.333 0.698 0.060 0.100 0.465 0.339 0.130 3.304 0.898 0.116 1139 chr20 20410750 20490662 + 0 NA intron (NM_020343, intron 37 of 39) intron (NM_020343, intron 37 of 39) 101941 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 1.967 1.713 nan 0.494 3.273 1.678 1.218 0.174 0.110 0.908 0.567 1.243 0.766 0.037 0.086 1.423 1.775 0.614 0.617 0.921 1.017 3.778 1.278 0.308 0.320 3.149 4.293 1.548 1.462 3.920 3.435 0.950 1.535 3.789 4.690 0.641 1.419 1.815 0.924 0.361 0.729 1.705 0.686 1.218 1.243 1.530 1.155 0.947 0.492 1274 chr3 114798441 114821467 + 0 NA intron (NM_015642, intron 1 of 9) intron (NM_015642, intron 1 of 9) -9316 NR_046877 100874131 NR_046877 ENSG00000242767 ZBTB20-AS4 - ZBTB20 antisense RNA 4 ncRNA 1.325 nan 1.287 0.318 1.945 1.086 0.353 0.580 0.151 0.857 0.618 1.339 0.419 0.160 0.102 0.583 0.788 1.456 2.169 1.316 nan 4.014 1.487 0.405 0.394 nan 7.302 0.628 0.760 1.337 0.647 0.392 0.482 1.104 1.134 0.577 1.224 1.445 0.846 0.824 0.111 0.190 0.031 0.353 1.339 0.053 0.374 0.193 0.445 1456 chr6 10380240 10390169 + 0 NA Intergenic CpG -27347 NR_033910 100130275 Hs.661431 NR_033910 TFAP2A-AS1 - TFAP2A antisense RNA 1 ncRNA 0.921 nan 0.938 0.976 1.400 0.612 0.293 0.085 0.048 0.887 0.456 0.835 0.358 0.054 0.099 4.284 4.160 8.094 7.382 0.555 0.452 3.213 0.833 1.882 1.976 0.154 0.376 0.112 0.114 0.443 0.203 1.739 3.803 5.412 5.926 0.242 0.421 0.573 0.566 0.090 0.233 0.988 1.876 0.293 0.835 0.020 0.366 2.509 0.049 1754 chr9 127410673 127462860 + 0 NA intron (NR_038975, intron 1 of 1) MIR|SINE|MIR 16051 NR_038975 100379345 Hs.660412 NR_038975 ENSG00000224020 MIR181A2HG - MIR181A2 host gene ncRNA nan nan 1.218 1.280 0.529 0.342 0.544 0.911 0.143 0.421 0.334 0.405 nan 2.909 0.147 1.081 1.132 1.894 2.567 1.175 0.888 1.120 0.351 2.576 2.734 0.579 nan 1.068 1.385 1.606 1.442 1.007 1.282 1.212 1.077 1.082 1.561 nan 0.737 0.303 0.109 0.148 0.189 0.544 0.405 0.052 0.192 0.586 0.485 798 chr17 46566271 46591202 + 0 NA Intergenic Intergenic 29536 NM_002144 3211 Hs.99992 NM_002144 ENSG00000120094 HOXB1 HCFP3|HOX2|HOX2I|Hox-2.9 homeobox B1 protein-coding 0.765 4.549 nan 2.316 2.977 1.550 0.108 0.099 0.077 3.099 1.360 2.755 8.717 0.121 0.123 0.366 0.353 0.118 0.214 1.970 nan 3.062 1.961 0.488 0.582 0.232 0.348 2.505 nan 0.461 0.146 0.149 0.269 3.021 2.578 0.136 0.242 3.282 1.562 1.311 3.306 1.076 0.022 0.108 2.755 0.023 1.223 0.028 0.045 88 chr1 56181485 56195494 + 0 NA Intergenic MIRc|SINE|MIR 497175 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 1.064 0.713 0.977 0.164 0.235 0.068 0.138 0.856 0.164 0.077 0.117 0.119 0.378 0.039 0.109 0.367 0.280 2.558 6.712 0.457 0.492 0.122 0.077 0.538 0.537 0.619 0.953 0.409 0.469 0.385 0.165 0.175 0.283 0.045 0.040 0.490 nan 0.589 0.536 0.083 0.070 0.006 0.080 0.138 0.119 0.119 0.058 0.040 0.167 74 chr1 44397906 44422114 + 0 NA Intergenic L1MEd|LINE|L1 -2468 NM_014652 9670 Hs.158497 NM_014652 ENSG00000117408 IPO13 IMP13|KAP13|LGL2|RANBP13 importin 13 protein-coding nan 2.211 nan 0.796 2.494 1.624 1.999 1.031 0.153 0.564 0.367 2.327 1.965 0.654 0.095 1.545 2.162 1.316 2.055 3.608 3.443 1.617 0.890 1.686 1.826 1.464 nan nan 10.018 3.078 3.136 2.330 nan 0.846 1.034 1.860 3.350 1.549 0.865 2.805 2.587 0.207 0.639 1.999 2.327 0.974 0.821 1.619 1.016 249 chr10 1577524 1618524 + 0 NA intron (NR_033387, intron 1 of 1) AluSx|SINE|Alu 29199 NR_033387 642394 Hs.568831 NM_001098830 ENSG00000205696 ADARB2-AS1 C10orf109|NCRNA00168|bA466B20.1 ADARB2 antisense RNA 1 ncRNA 0.497 0.389 0.629 0.776 0.819 0.356 0.270 0.086 0.137 0.689 0.364 3.736 0.832 0.043 0.089 0.610 0.837 0.123 0.161 1.601 1.466 0.710 0.275 0.219 0.267 0.099 0.194 2.463 3.196 0.193 0.105 0.394 0.712 0.030 0.036 0.082 0.111 0.649 0.444 0.944 0.871 0.009 0.051 0.270 3.736 0.103 0.332 0.280 0.027 1654 chr8 73701453 73715169 + 0 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) 64031 NR_110656 101926908 Hs.680588 NR_110656 ENSG00000253726 LOC101926908 - uncharacterized LOC101926908 ncRNA 1.814 0.967 1.940 1.750 0.491 0.233 0.233 0.115 0.153 1.008 0.478 4.329 0.922 0.079 0.075 0.388 0.343 1.608 1.217 1.551 2.047 2.937 1.384 0.798 0.782 0.472 0.751 2.189 2.745 0.389 0.224 0.408 0.708 3.677 5.289 1.007 2.895 3.969 2.030 0.113 0.461 1.168 0.134 0.233 4.329 0.057 1.922 0.221 0.677 739 chr17 7482145 7493223 + 0 NA promoter-TSS (NR_136401) promoter-TSS (NR_136401) -287 NR_136401 100996842 Hs.720681 NM_001322800 ENSG00000233223 LOC100996842 - uncharacterized LOC100996842 protein-coding 2.859 1.625 2.983 1.415 3.228 1.983 1.609 0.531 0.072 0.619 0.402 2.469 2.529 2.950 0.283 5.971 6.017 5.537 7.276 4.068 3.969 4.894 2.916 3.308 3.736 3.372 4.462 6.079 7.332 1.992 1.817 2.118 2.517 1.881 2.509 4.224 5.175 1.289 0.791 2.251 1.138 0.313 1.461 1.609 2.469 0.779 3.376 0.756 2.519 1734 chr9 37021923 37038474 + 0 NA intron (NM_001280547, intron 1 of 8) CpG 4278 NM_001280554 5079 Hs.654464 NM_016734 ENSG00000196092 PAX5 ALL3|BSAP paired box 5 protein-coding 1.809 nan 1.021 1.282 1.839 0.852 0.545 0.063 0.106 1.347 0.801 2.434 2.318 0.151 0.065 2.891 3.644 0.577 0.847 2.529 2.302 6.624 1.972 1.972 1.884 1.499 2.073 2.618 3.366 1.797 1.812 3.983 6.281 1.102 1.119 0.726 1.010 2.874 2.173 2.557 0.728 0.126 0.756 0.545 2.434 0.162 0.484 2.481 0.151 1503 chr6 51242981 51265171 + 0 NA Intergenic Intergenic -232592 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 0.773 0.905 nan 0.318 0.425 0.303 0.335 0.114 0.094 0.078 0.080 0.750 0.637 0.020 0.115 0.693 0.319 5.772 5.990 0.649 0.731 0.126 0.065 0.611 0.696 0.165 0.286 0.394 0.413 0.233 0.071 0.325 0.436 0.459 0.456 0.212 0.363 0.137 0.283 0.032 0.143 0.086 0.107 0.335 0.750 0.005 0.082 0.062 0.066 659 chr15 67368686 67419389 + 0 NA intron (NM_005902, intron 1 of 8) intron (NM_005902, intron 1 of 8) -24017 NM_001145102 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 0.989 0.961 nan 0.182 0.310 0.177 0.392 2.298 0.251 0.118 0.100 0.238 0.395 0.045 0.074 0.268 0.175 1.193 3.638 0.307 0.323 nan 0.194 0.300 0.299 0.336 0.596 0.777 0.768 0.420 0.232 0.430 0.520 0.466 0.919 0.159 0.216 0.396 0.378 0.018 0.108 0.101 0.087 0.392 0.238 0.174 0.075 0.396 0.075 1518 chr6 129917118 129931818 + 0 NA intron (NM_033515, intron 10 of 14) L1PB2|LINE|L1 106902 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 0.895 0.962 0.693 0.142 0.247 0.131 0.463 0.918 0.102 0.394 0.241 0.033 0.319 0.015 0.129 0.814 0.985 0.471 0.783 0.216 0.228 9.729 3.285 0.854 1.025 0.485 0.699 0.316 0.363 1.507 1.563 0.294 0.578 4.871 6.556 0.353 0.699 1.497 0.618 0.011 0.066 0.899 0.145 0.463 0.033 0.053 0.192 0.379 0.160 1680 chr8 128037636 128564211 + 0 NA TTS (NR_117100) TTS (NR_117100) 44041 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLo-2|LINC01244 cancer susceptibility candidate 21 (non-protein coding) ncRNA nan nan nan 0.251 0.859 0.453 0.080 0.216 0.098 0.062 0.076 0.092 nan 0.564 0.103 0.655 0.568 0.699 0.960 0.455 0.550 0.663 0.251 nan nan 8.325 11.981 0.903 0.877 16.781 9.739 0.194 0.298 0.161 0.170 10.860 20.399 0.480 0.450 0.069 0.184 0.071 0.068 0.080 0.092 0.508 0.088 0.097 10.096 1583 chr7 57697300 57701845 + 0 NA Intergenic L2b|LINE|L2 189689 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding nan 0.986 1.231 0.181 0.549 0.463 0.141 0.165 0.324 0.136 0.183 0.106 0.582 0.163 0.271 2.489 5.459 8.705 1.851 0.349 0.421 0.208 0.135 0.449 0.565 0.334 0.447 0.104 0.219 0.559 0.172 0.595 0.846 0.036 0.132 0.236 0.280 0.363 0.504 0.036 0.136 0.084 0.159 0.141 0.106 0.022 0.056 0.152 0.080 507 chr12 115337799 115366112 + 0 NA Intergenic Intergenic -229986 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box 3 protein-coding nan nan 0.449 0.198 0.368 0.234 0.457 0.069 0.103 0.034 0.082 0.276 0.766 0.065 0.102 0.749 0.910 0.165 0.198 nan nan nan 0.052 7.544 8.110 0.129 0.271 nan nan 0.230 0.064 1.004 1.119 0.145 0.176 0.393 0.760 nan 0.267 3.019 0.468 0.024 0.017 0.457 0.276 0.010 0.115 0.730 0.314 1559 chr7 20253670 20267764 + 0 NA intron (NR_134569, intron 3 of 3) intron (NR_134569, intron 3 of 3) 3517 NR_134567 100506098 Hs.59203 NR_134567 ENSG00000233834 LOC100506098 - uncharacterized LOC100506098 ncRNA 0.977 1.654 1.201 1.930 0.795 0.497 0.227 0.122 0.126 0.722 0.361 0.970 1.713 0.032 0.176 2.896 2.632 5.699 nan 0.635 0.642 6.873 4.057 1.381 1.372 0.458 0.679 8.119 9.881 0.370 0.157 1.950 2.241 2.889 3.055 0.286 nan 1.284 0.908 2.002 0.152 0.521 0.056 0.227 0.970 0.034 0.891 0.828 0.036 229 chr1 232117320 232125888 + 0 NA intron (NM_001012957, intron 10 of 12) intron (NM_001012957, intron 10 of 12) 60024 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 1.062 1.555 1.326 0.347 0.611 0.207 0.843 0.169 0.077 0.160 0.183 0.307 0.784 0.038 0.127 0.384 0.332 4.005 11.162 0.533 0.567 nan 1.287 0.248 0.352 0.366 0.708 nan 0.418 0.358 0.192 0.178 0.232 0.149 0.123 0.313 0.527 nan 0.602 0.091 0.072 0.045 0.175 0.843 0.307 0.057 0.213 0.219 0.130 493 chr12 81076464 81080515 + 0 NA Intergenic Intergenic -22919 NM_002469 4618 Hs.35937 NM_002469 ENSG00000111046 MYF6 CNM3|MRF4|bHLHc4|myf-6 myogenic factor 6 protein-coding 0.884 0.771 0.633 0.088 0.838 0.593 0.182 0.093 0.620 0.340 0.587 0.224 0.028 0.079 3.559 3.352 1.934 0.896 0.402 0.498 0.261 0.136 0.323 0.449 0.357 0.464 3.315 3.695 0.241 0.078 0.156 0.212 9.579 12.972 0.262 0.488 0.527 0.472 0.027 0.066 1.533 0.020 0.587 0.025 0.125 476 chr12 54647665 54663691 + 0 NA intron (NM_012117, intron 1 of 4) intron (NM_012117, intron 1 of 4) -2308 NM_001127321 23468 Hs.349283 NM_012117 ENSG00000094916 CBX5 HEL25|HP1|HP1A chromobox 5 protein-coding nan 1.765 1.363 0.128 1.148 0.504 1.950 1.713 0.342 1.229 0.810 1.373 1.888 0.426 0.084 nan 2.432 0.750 1.668 2.165 nan 3.932 2.119 0.594 0.555 2.323 nan 2.378 nan 4.896 3.878 0.698 1.207 3.228 3.345 3.291 8.668 2.461 1.167 0.356 1.169 1.093 1.177 1.950 1.373 0.545 1.148 0.635 3.415 388 chr11 93469908 93479282 + 0 NA promoter-TSS (NM_001286067) promoter-TSS (NM_001286067) 108 NM_024116 79101 Hs.355750 NM_024116 ENSG00000166012 TAF1D JOSD3|RAFI41|TAF(I)41|TAFI41 TATA-box binding protein associated factor, RNA polymerase I subunit D protein-coding 1.943 nan 1.480 2.608 2.628 1.300 1.774 0.563 0.119 1.445 0.771 2.473 5.222 2.846 0.179 10.239 9.677 3.896 nan 4.936 5.096 5.227 2.752 13.864 14.357 3.596 4.376 5.122 6.801 5.345 5.744 4.746 7.514 3.747 4.401 5.523 nan 2.663 1.420 1.874 2.099 0.632 1.298 1.774 2.473 0.599 1.474 2.250 2.050 599 chr14 61222442 61235863 + 0 NA intron (NM_002431, intron 1 of 7) AluSx1|SINE|Alu 27693 NM_001177963 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1, CDK activating kinase assembly factor protein-coding nan nan 0.988 3.459 5.843 2.856 1.256 0.749 0.132 0.433 0.233 3.714 0.645 0.089 0.134 0.324 0.252 0.549 0.804 3.523 4.488 4.283 2.514 nan 0.675 0.461 0.729 2.752 nan 0.765 0.332 0.239 0.414 1.622 1.605 0.195 0.444 0.501 0.368 0.955 1.039 0.135 2.047 1.256 3.714 0.088 0.015 0.077 0.119 1269 chr3 114153425 114178066 + 0 NA intron (NM_001164343, intron 8 of 11) intron (NM_001164343, intron 8 of 11) -6695 NR_121661 101929754 Hs.614195 NR_121661 ENSG00000242290 ZBTB20-AS5 - ZBTB20 antisense RNA 5 ncRNA 1.111 nan 0.713 0.302 1.552 0.678 1.302 1.299 0.175 0.838 0.493 4.300 3.918 0.092 0.068 6.998 8.245 10.474 12.929 6.588 nan 1.993 0.613 0.269 0.328 nan 2.694 0.346 0.382 2.329 1.601 2.895 4.690 0.274 0.232 0.299 0.416 2.721 1.816 3.111 0.749 0.050 0.187 1.302 4.300 0.401 0.132 2.445 0.095 1391 chr5 51323074 51344310 + 0 NA Intergenic Intergenic -654526 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA nan nan 0.760 1.473 5.632 2.933 5.926 0.094 0.053 1.968 1.510 2.871 2.524 0.086 0.123 0.172 0.091 0.291 0.282 6.049 7.783 nan 1.696 0.076 0.065 0.615 0.745 0.755 0.943 nan 0.230 0.066 0.060 1.985 2.199 0.231 0.392 4.354 1.534 6.844 3.136 0.714 0.205 5.926 2.871 0.005 0.036 0.042 0.053 649 chr15 60766910 60772108 + 0 NA intron (NM_001276385, intron 2 of 8) intron (NM_001276385, intron 2 of 8) 1850 NM_001276385 79664 Hs.200943 NM_024611 ENSG00000128915 ICE2 BRCC1|NARG2 interactor of little elongation complex ELL subunit 2 protein-coding 3.947 2.837 nan 2.442 3.607 1.354 2.892 1.364 0.172 2.148 0.872 4.262 6.423 2.163 0.082 4.052 3.758 10.318 11.204 3.784 3.595 nan 2.033 6.243 6.594 4.536 5.279 4.431 7.046 7.566 7.088 3.086 4.610 5.404 5.317 4.078 4.238 2.563 1.652 1.373 1.472 0.750 0.766 2.892 4.262 1.109 1.997 1.137 1.091 914 chr19 1847034 1865587 + 0 NA intron (NM_031918, intron 1 of 1) intron (NM_031918, intron 1 of 1) 7254 NM_031918 83855 Hs.136280 NM_031918 ENSG00000129911 KLF16 BTEB4|DRRF|NSLP2 Kruppel like factor 16 protein-coding 3.480 1.437 3.661 1.864 2.523 1.200 3.622 1.000 0.190 0.734 0.359 2.557 3.063 1.983 0.078 3.831 4.482 2.441 3.805 2.593 2.757 2.449 1.401 5.554 5.350 1.858 2.922 2.469 nan 7.259 8.314 1.540 2.306 3.360 3.444 3.581 4.820 1.900 1.092 1.631 2.284 1.072 0.679 3.622 2.557 1.542 1.359 0.909 2.267 1527 chr6 156656600 156671895 + 0 NA Intergenic Intergenic 396316 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA nan 0.542 0.757 3.569 0.588 0.252 0.346 0.083 0.031 0.287 0.281 2.097 2.572 0.049 0.110 0.412 0.356 0.179 0.225 1.772 nan 6.051 1.561 0.243 0.259 0.077 0.160 1.865 2.324 1.776 1.796 0.167 0.219 1.398 0.971 0.157 nan 0.856 0.522 1.515 0.580 0.231 0.083 0.346 2.097 0.195 0.611 0.045 0.069 84 chr1 54698002 54831103 + 0 NA intron (NM_001009955, intron 4 of 16) intron (NM_001009955, intron 4 of 16) 62436 NR_103541 619518 Hs.591438 NM_001034847 ENSG00000198711 SSBP3-AS1 C1orf191|MST128|MSTP128 SSBP3 antisense RNA 1 ncRNA 2.169 1.044 3.510 0.429 1.217 0.634 0.881 0.316 0.104 0.419 0.237 0.467 0.690 0.162 0.103 0.637 0.960 0.316 0.504 1.483 1.566 1.099 0.345 0.463 0.480 1.453 2.112 1.374 1.649 3.238 3.008 0.555 0.801 0.501 0.580 2.116 nan 1.560 0.965 0.383 0.221 0.151 0.409 0.881 0.467 0.704 0.299 0.265 2.882 183 chr1 183437071 183453288 + 0 NA intron (NM_001174061, intron 1 of 21) intron (NM_001174061, intron 1 of 21) 3673 NM_173156 9887 Hs.591463 NM_014837 ENSG00000116698 SMG7 C1orf16|EST1C|SGA56M SMG7, nonsense mediated mRNA decay factor protein-coding nan nan 2.785 1.821 1.843 1.197 2.578 2.084 0.285 1.668 0.733 1.542 4.795 1.464 0.126 3.268 3.820 4.969 6.349 4.937 nan 3.380 1.942 nan 6.667 2.754 3.690 3.974 5.404 3.215 3.294 3.493 5.401 3.671 4.101 4.469 nan 1.851 1.294 1.045 3.463 0.848 1.112 2.578 1.542 0.911 1.032 2.048 1.344 337 chr11 46430840 46490660 + 0 NA intron (NM_001300731, intron 11 of 16) AluJr4|SINE|Alu -12607 NR_036118 100422825 NR_036118 ENSG00000283497 MIR3160-2 mir-3160-2 microRNA 3160-2 ncRNA nan 1.120 1.090 0.961 1.554 0.812 0.529 0.205 0.126 0.393 0.308 0.540 1.082 0.095 0.139 0.611 0.783 0.335 0.414 1.942 2.143 1.597 0.467 0.393 0.416 0.753 1.127 0.364 0.442 0.677 0.517 0.314 0.481 1.084 1.196 0.971 nan 1.513 0.824 0.900 0.206 0.313 0.370 0.529 0.540 0.094 0.138 0.079 1.126 198 chr1 203095708 203115262 + 0 NA intron (NM_001048230, intron 2 of 2) intron (NM_001048230, intron 2 of 2) 8649 NM_000674 134 Hs.77867 NM_000674 ENSG00000163485 ADORA1 RDC7 adenosine A1 receptor protein-coding 1.445 1.719 1.581 0.350 1.127 0.551 0.634 0.144 0.074 0.470 0.350 2.181 1.720 0.198 0.110 2.381 4.101 3.139 2.791 1.875 2.318 1.532 0.381 nan nan 0.691 1.093 0.468 0.645 0.390 0.192 0.697 0.843 0.344 0.246 0.584 1.304 1.065 0.681 0.175 0.397 0.039 0.155 0.634 2.181 0.090 0.062 0.485 0.209 387 chr11 93006376 93023189 + 0 NA Intergenic L1MA4A|LINE|L1 -49101 NM_181645 159989 Hs.436625 NM_181645 ENSG00000165325 DEUP1 CCDC67 deuterosome assembly protein 1 protein-coding 0.677 nan 0.591 0.270 0.266 0.096 0.167 0.071 0.048 0.397 0.212 0.334 2.318 0.067 0.105 0.673 0.434 0.222 nan 0.867 0.848 0.183 0.064 0.363 0.480 0.232 0.400 1.014 2.250 0.284 0.147 0.229 0.364 0.933 1.352 0.224 nan 0.717 0.481 4.221 0.391 0.407 0.123 0.167 0.334 0.012 0.265 0.141 0.118 745 chr17 12658549 12672296 + 0 NA non-coding (NR_104607, exon 2 of 2) non-coding (NR_104607, exon 2 of 2) -27407 NM_001321164 9912 Hs.499758 NM_014859 ENSG00000006740 ARHGAP44 NPC-A-10|RICH2 Rho GTPase activating protein 44 protein-coding 0.619 0.414 0.458 1.369 4.547 1.858 0.066 0.043 0.058 0.058 0.052 0.095 0.257 0.025 0.045 0.437 0.398 0.187 nan 0.850 0.840 0.101 0.071 0.122 0.084 0.091 0.178 0.165 0.145 nan 0.549 0.074 0.087 0.045 0.036 0.153 0.212 0.100 0.131 0.024 0.020 0.006 0.066 0.095 0.007 0.030 0.021 0.030 291 chr10 132956156 132965609 + 0 NA intron (NM_174937, intron 6 of 11) intron (NM_174937, intron 6 of 11) 67401 NR_120623 101927489 NR_120623 ENSG00000230098 TCERG1L-AS1 - TCERG1L antisense RNA 1 ncRNA 0.503 1.107 0.797 0.430 8.535 4.832 0.531 0.095 0.041 0.232 0.271 1.952 0.614 0.034 0.072 0.256 0.129 0.028 0.120 0.430 0.512 0.949 0.315 0.088 0.064 0.035 0.127 1.545 1.686 0.155 0.125 0.194 0.259 0.283 0.294 0.045 0.086 1.709 0.723 0.301 0.373 0.110 0.050 0.531 1.952 0.155 0.043 0.032 0.013 53 chr1 32797469 32808516 + 0 NA Intergenic Intergenic -1152 NM_023009 65108 Hs.75061 NM_023009 ENSG00000175130 MARCKSL1 F52|MACMARCKS|MLP|MLP1|MRP MARCKS like 1 protein-coding 3.033 nan 2.809 3.067 2.209 1.082 1.803 0.335 0.087 1.876 0.862 4.113 4.266 1.641 0.113 6.365 8.449 2.741 3.589 4.428 4.499 nan 1.032 4.240 4.262 1.832 2.684 1.852 2.571 nan 2.773 2.586 5.594 1.397 0.759 2.079 2.034 1.152 nan 1.697 1.952 0.243 1.330 1.803 4.113 0.395 1.117 1.550 0.681 512 chr12 122062035 122074664 + 0 NA intron (NM_032790, intron 1 of 1) AluSq|SINE|Alu 3894 NM_032790 84876 Hs.55148 NM_032790 ORAI1 CRACM1|IMD9|ORAT1|TAM2|TMEM142A ORAI calcium release-activated calcium modulator 1 protein-coding 1.854 3.022 1.833 3.627 0.782 0.363 1.502 0.567 0.242 0.685 0.476 0.809 6.816 1.267 0.128 1.209 1.353 1.538 2.456 1.376 1.349 nan 1.575 1.668 1.674 1.112 1.692 5.428 8.130 1.821 1.434 0.916 1.166 2.852 3.414 1.908 4.507 3.900 1.760 2.814 6.516 0.898 0.419 1.502 0.809 0.455 1.640 0.455 1.104 93 chr1 61541519 61559863 + 0 NA intron (NM_001134673, intron 1 of 10) intron (NM_001134673, intron 1 of 10) 2711 NM_005595 4774 Hs.740757 NM_005595 ENSG00000162599 NFIA CTF|NF-I/A|NF1-A|NFI-A|NFI-L nuclear factor I A protein-coding 3.680 2.990 nan 0.922 1.698 0.844 0.662 2.614 0.281 1.483 0.825 0.862 5.360 1.699 0.172 0.935 1.631 2.228 3.234 2.070 1.860 0.206 0.142 0.860 0.908 nan nan 2.619 nan 2.420 2.635 0.321 0.945 2.409 2.293 0.879 1.689 3.397 1.787 2.296 1.543 0.541 1.511 0.662 0.862 0.752 1.668 0.602 0.466 1217 chr22 19499771 19516079 + 0 NA intron (NM_003504, intron 18 of 18) intron (NM_003504, intron 18 of 18) 4935 NM_003277 7122 Hs.505337 NM_003277 ENSG00000184113 CLDN5 AWAL|BEC1|CPETRL1|TMVCF claudin 5 protein-coding 1.336 nan 2.889 1.352 0.323 0.215 0.305 0.073 0.063 0.924 0.336 0.250 0.957 0.053 0.043 0.387 0.508 0.222 0.329 1.718 1.637 2.817 0.569 0.332 0.362 0.609 0.857 0.735 1.200 1.177 1.141 0.146 0.210 2.382 2.499 0.701 1.043 3.851 1.896 0.284 0.683 0.631 0.111 0.305 0.250 0.579 1.636 0.024 0.249 1770 chr9 135867777 135872754 + 0 NA Intergenic Intergenic 16167 NM_001135031 8328 Hs.553160 NM_004188 ENSG00000165702 GFI1B BDPLT17|ZNF163B growth factor independent 1B transcriptional repressor protein-coding nan 0.393 0.589 0.223 0.284 0.207 0.093 0.046 0.096 0.127 0.067 0.120 0.637 0.044 0.157 2.364 3.982 11.883 7.549 0.566 0.579 nan 0.179 3.422 3.442 0.070 0.145 0.780 0.737 0.455 0.242 2.994 5.918 0.119 0.190 0.057 0.142 0.313 0.394 0.346 0.054 0.051 0.093 0.120 0.081 0.081 4.410 0.050 421 chr11 129182267 129196376 + 0 NA Intergenic Intergenic -56560 NM_003658 8538 Hs.591944 NM_003658 ENSG00000043039 BARX2 - BARX homeobox 2 protein-coding 0.876 1.983 3.449 1.443 0.769 0.337 0.229 0.031 0.045 1.163 0.585 1.402 2.860 0.107 0.094 0.933 1.050 0.392 0.596 0.743 0.806 3.427 1.002 0.616 0.720 0.578 0.941 7.307 7.276 1.548 1.686 1.668 2.134 2.117 1.726 0.270 nan 1.604 1.083 0.412 0.408 0.472 0.056 0.229 1.402 0.217 1.580 1.229 0.189 897 chr18 60733873 60745098 + 0 NA Intergenic Intergenic 247128 NM_000657 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2, apoptosis regulator protein-coding 0.712 1.362 1.863 1.383 0.266 0.185 0.115 0.054 0.187 0.028 0.147 1.446 2.445 0.068 0.135 1.126 0.829 6.706 4.109 1.826 1.246 1.994 0.563 26.624 27.451 0.175 nan 3.197 3.325 0.479 0.235 0.908 1.186 0.311 0.497 0.143 0.238 1.815 1.356 0.222 0.104 0.051 0.284 0.115 1.446 0.199 0.564 0.033 713 chr16 72938957 73106200 + 0 NA intron (NM_006885, intron 1 of 9) intron (NM_006885, intron 1 of 9) 59696 NM_006885 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 0.840 1.452 nan 1.417 1.111 0.552 0.796 0.812 0.152 0.389 0.266 1.157 1.775 0.370 0.080 2.443 2.781 5.307 7.082 1.321 1.228 0.698 0.223 3.959 4.067 0.828 1.254 1.675 2.378 1.457 1.098 0.930 1.638 0.309 0.394 0.375 0.616 1.339 0.855 0.543 0.582 0.047 0.193 0.796 1.157 0.159 1.091 0.705 0.195 1345 chr4 83291991 83297268 + 0 NA exon (NM_002138, exon 1 of 8) exon (NM_002138, exon 1 of 8) 520 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 6.791 3.588 4.291 4.955 9.529 4.407 6.050 3.603 0.183 3.313 1.385 6.281 11.344 3.748 0.160 8.414 7.261 11.645 15.807 11.066 10.083 11.230 5.371 20.196 21.236 4.662 nan 9.768 14.835 11.388 15.646 3.998 8.024 7.875 8.711 11.287 8.971 2.879 1.633 6.057 7.490 1.392 4.474 6.050 6.281 1.262 3.399 1.867 2.995 620 chr14 99732075 99741792 + 0 NA intron (NM_138576, intron 1 of 3) CpG 1117 NM_001282238 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IMD49|RIT1|ZNF856B|hRIT1-alpha B-cell CLL/lymphoma 11B protein-coding 1.037 0.629 0.719 0.415 5.380 2.613 6.049 0.131 0.033 0.080 0.196 6.347 12.826 0.196 0.068 2.510 3.578 0.067 0.111 14.344 10.945 0.385 0.141 2.652 2.499 3.386 4.639 4.698 6.288 3.429 4.166 2.082 5.319 0.109 0.192 4.404 6.166 0.252 0.251 5.081 0.686 0.030 5.659 6.049 6.347 2.657 0.021 2.785 2.402 1506 chr6 85469551 85487380 + 0 NA Intergenic Intergenic -4511 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 CAKUT2 T-box 18 protein-coding 0.576 0.577 nan 0.498 0.215 0.154 0.949 0.947 0.252 0.885 0.565 0.054 0.232 0.453 0.103 0.193 0.065 0.955 1.587 0.141 0.181 1.792 0.716 1.067 1.151 0.143 0.274 0.563 0.615 0.309 0.127 0.120 0.122 0.063 0.110 0.091 0.195 0.134 0.174 0.022 0.029 0.016 0.009 0.949 0.054 0.016 3.817 0.011 0.048 966 chr19 42771406 42791763 + 0 NA intron (NM_001304815, intron 2 of 20) AluSx|SINE|Alu -7233 NM_015125 23152 Hs.388236 NM_015125 ENSG00000079432 CIC - capicua transcriptional repressor protein-coding 4.739 2.446 3.297 2.272 3.196 1.771 4.019 1.405 0.238 1.877 0.971 3.862 5.687 4.187 0.144 2.470 3.576 2.902 4.605 4.918 4.637 3.873 2.286 5.662 6.000 4.016 5.307 2.842 4.363 3.974 3.454 2.537 3.925 5.700 5.947 2.869 3.794 2.862 1.290 3.714 3.260 2.444 1.226 4.019 3.862 1.947 1.679 2.432 1.148 822 chr17 75066339 75103584 + 0 NA promoter-TSS (NR_106997) promoter-TSS (NR_106997) 236 NM_001204408 6397 Hs.464184 NM_003003 ENSG00000129657 SEC14L1 PRELID4A|SEC14L SEC14 like lipid binding 1 protein-coding 1.513 1.530 1.087 1.303 1.885 1.007 1.276 0.774 0.276 1.172 0.894 1.019 2.070 0.448 0.118 1.862 1.825 0.729 1.038 1.339 1.304 3.737 0.893 7.154 7.652 nan 1.666 1.634 2.109 2.130 1.726 0.980 1.206 1.950 2.087 1.029 1.777 nan 0.996 0.458 0.405 0.634 0.248 1.276 1.019 0.246 0.597 0.654 0.476 609 chr14 76929353 76940673 + 0 NA intron (NM_004452, intron 5 of 10) MIR|SINE|MIR 97323 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 1.153 0.688 0.843 0.966 0.353 0.085 0.988 0.182 0.056 0.041 0.103 1.062 0.551 0.038 0.097 0.308 0.289 0.170 0.205 5.387 6.072 0.123 0.064 0.432 0.463 0.611 0.968 1.414 nan 1.053 0.582 0.215 0.309 0.163 0.138 0.587 2.001 0.822 nan 0.400 0.772 0.042 0.225 0.988 1.062 0.173 0.106 0.044 0.340 1321 chr3 193834406 193861915 + 0 NA Intergenic Intergenic -5771 NM_005524 3280 Hs.250666 NM_005524 ENSG00000114315 HES1 HES-1|HHL|HRY|bHLHb39 hes family bHLH transcription factor 1 protein-coding nan 3.712 2.368 3.411 3.162 1.592 1.130 2.771 0.298 1.779 0.771 2.516 nan 1.604 0.079 1.856 2.560 2.762 8.699 2.050 1.559 4.964 2.719 2.771 2.644 0.590 1.123 4.140 5.053 2.566 2.593 1.188 1.681 2.472 2.352 1.282 1.607 1.346 0.751 4.157 0.677 0.686 1.049 1.130 2.516 0.712 1.081 1.151 0.606 419 chr11 129009215 129018621 + 0 NA intron (NM_001142685, intron 2 of 21) intron (NM_001142685, intron 2 of 21) 48175 NM_001142685 9743 Hs.440379 NM_014715 ENSG00000134909 ARHGAP32 GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP Rho GTPase activating protein 32 protein-coding 0.699 0.884 0.551 0.132 0.381 0.166 0.269 0.152 0.051 0.199 0.117 0.140 0.261 3.517 0.145 0.722 0.719 0.610 1.021 0.318 0.344 0.361 0.148 0.309 0.396 1.214 1.784 0.667 0.659 0.382 0.219 5.395 5.707 0.187 0.404 0.194 nan 0.155 0.170 0.042 0.067 0.051 0.026 0.269 0.140 0.021 0.065 12.355 0.093 1172 chr20 52251486 52424172 + 0 NA Intergenic Intergenic 112936 NR_134576 105372672 Hs.259350 NR_134576 ENSG00000235415 LOC105372672 - uncharacterized LOC105372672 ncRNA 1.225 1.573 1.039 0.216 0.416 0.244 0.626 1.310 0.415 0.067 0.079 0.099 0.323 6.258 0.299 0.998 nan 1.096 3.396 0.819 0.822 0.172 0.072 0.344 0.344 0.710 0.972 0.645 0.860 0.987 0.702 0.503 0.841 0.039 0.043 0.590 1.458 0.217 0.333 0.435 0.523 0.015 0.350 0.626 0.099 0.307 0.068 0.571 0.292 1536 chr6 170856335 170865638 + 0 NA intron (NM_002793, intron 1 of 5) intron (NM_002793, intron 1 of 5) 1431 NM_002793 5689 Hs.352768 NM_002793 ENSG00000008018 PSMB1 HC5|PMSB1|PSC5 proteasome subunit beta 1 protein-coding nan 1.895 nan 3.546 2.720 1.173 2.449 1.396 0.087 0.995 0.433 2.314 4.707 1.914 0.103 3.453 2.728 4.499 5.930 nan 4.231 9.088 4.380 8.716 8.754 1.585 2.146 nan 4.702 5.968 5.556 1.581 2.860 3.345 5.515 3.923 4.099 1.794 0.682 1.491 2.615 0.378 0.845 2.449 2.314 0.670 1.059 0.752 1.060 1073 chr2 162270306 162282723 + 0 NA intron (NM_006593, intron 4 of 5) intron (NM_006593, intron 4 of 5) 3909 NM_006593 10716 Hs.210862 NM_006593 ENSG00000136535 TBR1 TBR-1|TES-56 T-box, brain 1 protein-coding 0.978 5.639 nan 0.628 0.531 0.297 0.282 0.120 0.013 0.205 0.205 0.414 1.098 0.174 0.063 0.455 0.307 0.532 0.739 0.822 0.848 1.204 0.526 0.607 0.586 0.340 0.583 0.270 0.285 0.847 0.855 0.310 0.418 0.215 0.187 0.644 1.090 0.812 0.482 0.040 0.086 0.027 0.336 0.282 0.414 0.062 0.432 0.085 1.716 1670 chr8 103724116 103760650 + 0 NA Intergenic Intergenic -74253 NM_005655 7071 Hs.435001 NM_005655 ENSG00000155090 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel like factor 10 protein-coding 1.705 nan nan 0.561 0.574 0.325 0.302 0.891 0.211 0.138 0.093 0.276 1.003 0.098 0.062 0.345 0.382 0.242 0.361 0.858 1.012 nan 0.485 0.629 0.643 0.592 nan 3.192 nan nan 0.817 0.359 0.429 0.317 0.415 0.687 nan 1.800 0.974 0.549 0.175 0.058 0.181 0.302 0.276 0.184 2.677 0.082 0.469 540 chr13 73628505 73642315 + 0 NA intron (NM_001730, intron 1 of 3) intron (NM_001730, intron 1 of 3) 2480 NM_001730 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding nan 6.228 1.559 1.506 1.704 0.977 2.998 1.020 0.046 0.148 0.109 2.142 14.378 3.628 0.098 0.560 0.712 2.277 5.377 1.616 1.459 nan 1.581 0.663 0.713 0.216 0.284 2.361 3.455 nan 0.597 1.761 3.960 1.086 1.086 0.508 nan 0.400 0.235 1.159 5.109 0.138 3.475 2.998 2.142 0.055 0.383 1.533 0.126 1362 chr5 1289186 1302213 + 0 NA promoter-TSS (NM_001193376) promoter-TSS (NM_001193376) -537 NM_198253 7015 Hs.492203 NM_198253 ENSG00000164362 TERT CMM9|DKCA2|DKCB4|EST2|PFBMFT1|TCS1|TP2|TRT|hEST2|hTRT telomerase reverse transcriptase protein-coding 0.640 1.060 2.753 0.846 0.767 0.369 0.343 0.221 0.137 0.456 0.190 1.652 0.736 0.499 0.089 5.554 4.557 0.216 nan 8.936 6.922 2.774 0.772 0.276 0.325 0.232 0.528 nan 4.489 nan 0.762 0.530 0.432 0.748 0.645 0.207 0.492 3.186 nan 2.375 2.755 0.108 0.187 0.343 1.652 0.595 1.249 0.168 0.170 440 chr12 8178181 8192934 + 0 NA 5' UTR (NM_018416, exon 1 of 11) 5' UTR (NM_018416, exon 1 of 11) 198 NM_018416 55810 Hs.120844 NM_018416 ENSG00000065970 FOXJ2 FHX forkhead box J2 protein-coding 2.066 nan nan 3.402 2.486 1.372 1.750 0.556 0.077 0.964 0.554 1.744 6.717 2.366 0.154 1.342 1.747 2.034 3.444 nan 4.511 4.577 1.536 3.418 3.404 1.827 2.264 1.623 2.029 2.454 2.087 1.256 2.284 1.492 1.783 1.557 nan 1.592 0.830 1.541 2.194 0.304 0.118 1.750 1.744 6.084 0.704 1.423 0.657 124 chr1 151811311 151814201 + 0 NA 5' UTR (NM_001136003, exon 1 of 2) 5' UTR (NM_001136003, exon 1 of 2) 277 NM_001136003 100191040 Hs.694717 NM_001136003 ENSG00000225556 C2CD4D FAM148D C2 calcium dependent domain containing 4D protein-coding nan nan 1.427 2.315 4.425 2.358 0.387 0.127 2.547 1.388 5.024 2.180 0.074 0.054 7.633 9.353 5.626 9.686 6.313 nan 7.868 3.093 2.191 2.681 0.311 0.436 8.139 10.633 0.209 0.244 17.430 21.848 4.928 4.310 0.430 0.784 3.302 1.568 4.877 3.625 0.751 0.137 0.387 5.024 0.544 2.110 10.616 0.128 1639 chr8 49819643 49838543 + 0 NA Intergenic Intergenic 4906 NM_003068 6591 Hs.360174 NM_003068 ENSG00000019549 SNAI2 SLUG|SLUGH|SLUGH1|SNAIL2|WS2D snail family transcriptional repressor 2 protein-coding 1.721 nan 2.109 0.085 0.193 0.084 0.413 0.803 0.111 0.829 0.400 0.044 1.319 0.027 0.134 0.411 0.334 0.706 1.555 1.535 1.171 2.378 0.485 0.432 0.446 0.500 0.720 0.109 0.113 0.816 0.603 0.143 0.187 2.574 3.757 0.370 0.605 2.211 1.465 0.003 0.137 0.510 0.117 0.413 0.044 0.221 2.545 0.031 0.248 853 chr18 22209033 22241787 + 0 NA intron (NR_040033, intron 1 of 2) intron (NR_040033, intron 1 of 2) 17264 NR_040033 729950 Hs.585850 NR_040033 ENSG00000265485 LINC01915 - long intergenic non-protein coding RNA 1915 ncRNA 1.919 1.021 1.828 0.107 0.657 0.416 0.832 0.073 0.058 0.076 0.119 0.339 0.853 0.069 0.082 1.235 1.555 0.224 nan 3.506 3.875 0.254 0.169 0.113 0.131 0.841 1.084 0.430 0.398 2.877 3.115 0.193 0.227 0.617 0.674 2.006 7.247 1.268 1.165 1.402 0.179 0.160 0.288 0.832 0.339 0.404 0.204 0.051 4.598 155 chr1 159784133 159801556 + 0 NA Intergenic Intergenic -3635 NM_020125 56833 Hs.438683 NM_020125 ENSG00000158714 SLAMF8 BLAME|CD353|SBBI42 SLAM family member 8 protein-coding nan nan 3.492 0.344 7.360 3.809 0.360 0.102 0.055 0.817 0.326 1.783 0.457 0.013 0.101 0.433 0.514 0.475 0.490 2.058 nan 2.402 0.748 0.101 0.152 0.393 0.654 2.851 2.947 0.686 0.632 0.584 0.503 2.711 2.861 0.461 0.761 1.166 0.721 0.415 1.688 0.773 2.762 0.360 1.783 0.186 0.580 0.120 0.185 1335 chr4 48179839 48201282 + 0 NA intron (NM_003215, intron 2 of 17) intron (NM_003215, intron 2 of 17) -54287 NM_003328 7294 Hs.479669 NM_003328 ENSG00000074966 TXK BTKL|PSCTK5|PTK4|RLK|TKL TXK tyrosine kinase protein-coding 0.631 nan nan 2.199 3.823 2.045 0.083 0.214 0.099 1.904 0.774 0.665 0.271 0.045 0.084 0.366 0.243 0.169 0.281 0.519 0.469 3.587 0.942 0.259 0.284 0.284 0.391 2.637 2.830 0.914 0.660 0.162 0.209 1.068 0.931 0.363 0.986 2.766 1.530 0.021 0.091 0.234 0.015 0.083 0.665 0.009 0.588 0.028 0.231 543 chr13 74706415 74711375 + 0 NA promoter-TSS (NM_007249) promoter-TSS (NM_007249) -829 NM_007249 11278 Hs.373857 NM_007249 ENSG00000118922 KLF12 AP-2rep|AP2REP|HSPC122 Kruppel like factor 12 protein-coding nan 5.839 5.366 5.799 9.776 5.494 9.750 3.119 0.637 1.274 0.464 7.331 19.603 6.641 0.150 9.256 13.656 5.547 6.776 18.005 12.755 nan 4.136 4.824 4.484 0.767 0.996 3.750 6.668 nan 11.286 2.499 8.048 6.320 4.011 5.086 nan 1.058 0.837 5.813 9.696 1.905 10.831 9.750 7.331 2.137 1.864 4.757 2.396 1383 chr5 40833129 40836683 + 0 NA intron (NM_000997, intron 1 of 3) intron (NM_000997, intron 1 of 3) 481 NM_000997 6167 Hs.447582 NM_000997 ENSG00000145592 RPL37 L37 ribosomal protein L37 protein-coding 4.466 4.855 9.302 6.282 3.768 2.383 3.937 6.667 1.090 4.427 1.767 4.142 1.579 4.284 0.294 7.997 6.930 9.529 13.021 7.586 8.483 6.464 3.254 11.020 11.609 9.536 11.534 16.407 20.342 18.692 21.067 6.468 9.123 5.428 5.805 9.211 8.226 5.773 3.275 1.472 0.498 0.536 1.372 3.937 4.142 2.149 6.208 1.445 2.876 673 chr15 93439407 93474393 + 0 NA intron (NM_001042572, intron 2 of 12) AluJr|SINE|Alu 9271 NR_036136 100422995 NR_036136 ENSG00000173575 MIR3175 mir-3175 microRNA 3175 ncRNA nan nan nan 1.329 1.953 0.988 1.072 1.851 0.185 1.226 0.813 1.462 3.328 1.578 0.121 2.227 2.236 3.185 5.497 2.584 2.512 nan 2.525 7.903 8.013 2.568 3.073 3.184 4.621 nan 4.077 2.196 3.122 1.853 2.529 2.600 nan 1.361 0.821 0.856 1.786 0.248 1.466 1.072 1.462 0.269 0.705 1.920 0.633 1264 chr3 71613147 71636024 + 0 NA intron (NM_001012505, intron 2 of 6) intron (NM_001012505, intron 2 of 6) 8319 NM_001244808 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 1.672 0.909 2.165 1.322 0.878 0.409 0.582 0.464 0.070 1.350 0.634 1.183 3.179 0.205 0.075 0.574 0.709 3.228 nan 1.464 1.449 1.663 0.785 2.320 2.416 0.099 0.145 1.995 3.354 6.398 6.787 0.475 1.341 2.194 1.615 0.365 nan 1.409 0.817 0.176 1.321 0.578 1.120 0.582 1.183 0.217 1.616 0.626 0.168 212 chr1 213820706 213855044 + 0 NA Intergenic MLT1M|LTR|ERVL-MaLR -260217 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 1.073 1.282 1.203 3.103 1.104 0.675 0.254 0.100 0.142 0.963 0.554 3.085 nan 0.042 0.100 0.437 0.336 0.367 0.468 2.110 2.710 nan 0.727 0.788 0.826 0.289 nan 4.979 3.878 0.561 0.367 0.118 0.175 0.379 0.396 0.393 0.926 1.429 0.807 0.076 0.635 0.089 0.081 0.254 3.085 0.051 0.314 0.040 0.227 1364 chr5 1864919 1887653 + 0 NA Intergenic CpG 6594 NM_016358 50805 Hs.196927 NM_016358 ENSG00000113430 IRX4 IRXA3 iroquois homeobox 4 protein-coding 0.293 0.437 0.610 0.168 0.334 0.154 0.950 0.118 0.098 0.096 0.105 0.321 0.589 0.043 0.076 0.237 0.136 1.428 nan 2.890 1.926 0.387 0.099 0.051 0.046 0.144 0.254 nan 0.113 nan 0.390 0.104 0.115 0.088 0.116 0.052 0.068 0.453 nan 4.134 0.321 0.021 0.042 0.950 0.321 0.381 0.094 0.013 0.016 1762 chr9 130417430 130427572 + 0 NA intron (NM_001032221, intron 5 of 18) intron (NM_001032221, intron 5 of 18) 30573 NR_037473 100500872 NR_037473 ENSG00000279571 MIR3911 mir-3911 microRNA 3911 ncRNA nan 0.861 5.427 0.321 0.538 0.372 0.163 0.200 0.162 0.502 0.187 0.474 0.333 0.022 0.080 0.487 1.032 0.271 0.359 2.146 2.265 nan 0.188 0.386 0.346 2.366 2.666 2.760 3.379 8.131 7.424 0.203 0.342 1.213 1.621 2.405 5.118 2.377 1.418 0.098 0.264 0.302 1.700 0.163 0.474 2.344 0.250 0.039 1.012 582 chr14 36906155 36936660 + 0 NA Intergenic MLT1D|LTR|ERVL-MaLR 61583 NM_001101341 253970 Hs.509165 NM_001101341 ENSG00000229415 SFTA3 NANCI|SFTPH|SP-H surfactant associated 3 protein-coding 1.164 3.826 0.650 0.511 2.032 1.172 0.353 0.161 0.111 0.237 0.133 0.776 2.013 0.065 0.108 0.145 0.104 0.194 0.219 1.172 1.276 0.213 0.084 0.234 0.228 0.861 1.072 1.540 1.508 0.679 0.314 0.129 0.172 0.231 0.235 0.131 0.160 0.835 0.598 3.847 3.757 0.081 0.039 0.353 0.776 0.088 0.103 0.033 0.076 815 chr17 73054436 73058490 + 0 NA intron (NR_110834, intron 5 of 6) intron (NR_110834, intron 5 of 6) 13184 NR_110834 23510 Hs.514468 NM_015353 ENSG00000180901 KCTD2 - potassium channel tetramerization domain containing 2 protein-coding 1.884 1.153 1.500 0.215 0.651 0.394 0.189 0.245 0.277 0.345 0.345 0.138 0.505 0.144 0.126 0.797 0.908 0.387 0.606 0.718 0.866 0.340 0.154 0.495 0.502 nan 0.655 1.380 1.744 15.164 15.405 0.626 0.699 0.104 0.176 4.463 8.031 nan 0.346 0.855 0.215 0.024 0.126 0.189 0.138 0.264 0.673 0.388 2.931 1144 chr20 22460533 22517969 + 0 NA Intergenic L2c|LINE|L2 70029 NR_001558 140828 Hs.9842 NR_001558 ENSG00000259974 LINC00261 ALIEN|C20orf56|DEANR1|HCCDR1|NCRNA00261|onco-lncRNA-17 long intergenic non-protein coding RNA 261 ncRNA 0.789 1.178 nan 2.429 1.749 0.847 0.261 0.077 0.081 1.771 0.819 1.343 0.925 0.037 0.071 0.451 0.217 0.122 0.174 2.404 2.199 7.259 2.819 0.089 0.121 0.134 0.241 2.912 2.808 0.344 0.102 0.246 0.299 2.622 2.328 0.405 0.898 2.809 1.489 0.013 0.186 0.667 0.018 0.261 1.343 0.012 2.480 0.148 0.054 135 chr1 155138644 155149255 + 0 NA intron (NM_173852, intron 3 of 4) intron (NM_173852, intron 3 of 4) 1855 NM_173852 200185 Hs.516671 NM_173852 ENSG00000163463 KRTCAP2 KCP2 keratinocyte associated protein 2 protein-coding nan nan 2.125 1.408 1.750 0.944 3.872 0.990 0.213 1.279 0.732 2.157 7.521 2.336 0.172 2.280 3.056 2.185 2.845 5.672 nan 3.100 1.140 1.419 1.612 1.763 2.569 2.416 3.490 2.435 1.697 2.780 4.211 2.720 2.186 1.489 3.233 1.656 0.764 2.265 2.295 0.893 1.484 3.872 2.157 1.374 2.659 2.697 0.721 1449 chr6 5554529 5570431 + 0 NA intron (NM_006567, intron 5 of 6) intron (NM_006567, intron 5 of 6) -104172 NR_125848 101927972 Hs.668417 NR_125846 ENSG00000269985 LOC101927972 - uncharacterized LOC101927972 ncRNA 1.380 0.979 1.277 0.160 0.234 0.151 0.124 0.324 0.131 0.068 0.083 0.368 0.102 0.099 0.133 0.328 0.300 0.682 0.714 0.354 0.374 0.268 0.079 0.334 0.279 0.551 0.741 0.257 0.222 1.062 0.826 0.128 0.198 0.097 0.119 2.179 6.356 0.664 0.470 0.038 0.055 0.042 0.060 0.124 0.368 0.048 0.134 0.050 1.351 400 chr11 113703150 113720774 + 0 NA intron (NM_001346260, intron 2 of 22) intron (NM_001346260, intron 2 of 22) 34330 NM_001346267 57646 Hs.503891 NM_020886 ENSG00000048028 USP28 - ubiquitin specific peptidase 28 protein-coding 0.588 0.770 0.531 0.170 0.192 0.254 0.167 0.077 0.072 0.071 0.123 0.088 0.335 0.086 0.111 5.626 nan 2.723 2.247 0.561 0.637 0.338 0.154 0.822 0.866 0.386 nan 0.371 0.388 0.323 0.178 3.881 6.568 0.096 0.180 0.230 0.587 0.503 0.424 0.091 0.095 0.027 0.084 0.167 0.088 0.016 0.035 5.155 0.048 751 chr17 20943530 20948458 + 0 NA exon (NM_015276, exon 1 of 13) exon (NM_015276, exon 1 of 13) 358 NM_015276 23326 Hs.462492 NM_015276 ENSG00000124422 USP22 USP3L ubiquitin specific peptidase 22 protein-coding nan nan nan 5.755 10.011 5.597 6.116 1.594 0.391 1.871 1.017 7.127 8.220 7.077 0.229 7.215 7.049 7.218 9.124 9.619 8.949 9.069 4.501 6.836 6.753 4.484 5.621 9.854 14.273 12.631 14.136 2.707 4.694 5.876 6.352 10.376 nan 2.278 1.055 4.146 3.988 1.218 2.527 6.116 7.127 1.751 6.248 1.392 3.949 403 chr11 118488224 118514488 + 0 NA intron (NM_001144758, intron 6 of 22) intron (NM_001144758, intron 6 of 22) -13362 NR_106773 102466719 NR_106773 ENSG00000019144 MIR6716 hsa-mir-6716 microRNA 6716 ncRNA 1.124 1.779 1.480 1.493 0.872 0.368 0.925 0.406 0.073 0.849 0.511 1.468 3.264 0.558 0.079 1.668 nan 1.211 2.206 2.651 2.780 2.519 0.654 1.282 1.343 1.839 nan 5.696 4.345 0.683 0.467 2.426 4.346 1.845 1.439 0.471 1.017 1.721 0.852 5.881 1.422 0.783 0.190 0.925 1.468 0.397 0.990 3.235 0.236 1213 chr21 46540933 46548945 + 0 NA intron (NM_001346688, intron 1 of 11) AluJb|SINE|Alu -27506 NM_001346687 104 Hs.474018 NM_001112 ENSG00000197381 ADARB1 ADAR2|DRABA2|DRADA2|RED1 adenosine deaminase, RNA specific B1 protein-coding nan 0.950 1.734 0.343 0.345 0.160 2.295 0.161 0.160 0.019 0.095 0.045 1.943 0.028 0.061 0.650 0.675 0.313 0.576 0.736 0.977 nan 0.075 0.382 0.391 0.355 nan 0.163 0.155 10.634 8.485 0.399 0.674 3.062 3.909 4.041 8.043 1.112 0.880 0.063 9.076 0.712 0.137 2.295 0.045 3.009 0.431 0.177 3.405 1120 chr2 239193280 239200033 + 0 NA intron (NM_022817, intron 1 of 22) intron (NM_022817, intron 1 of 22) 551 NM_022817 8864 Hs.58756 NM_003894 ENSG00000132326 PER2 FASPS|FASPS1 period circadian clock 2 protein-coding 5.141 nan 7.520 2.018 2.548 1.311 1.819 0.757 0.024 1.459 0.425 6.282 3.656 0.787 0.174 3.178 5.370 3.676 8.332 2.379 1.942 3.339 2.756 4.708 5.034 1.531 2.263 5.683 7.480 1.844 2.572 3.714 5.249 5.846 4.153 2.223 1.690 1.940 1.338 0.866 2.870 0.819 2.152 1.819 6.282 0.376 4.480 2.830 0.677 1741 chr9 79622818 79634906 + 0 NA Intergenic Intergenic -5709 NM_001013735 442425 Hs.553843 NM_001013735 ENSG00000204612 FOXB2 bA159H20.4 forkhead box B2 protein-coding nan nan nan 1.154 0.482 0.293 1.724 0.060 0.041 0.156 0.152 6.533 1.740 0.046 0.079 0.162 0.067 0.588 nan 1.073 nan 1.327 0.303 0.233 0.225 0.115 0.189 0.567 0.743 0.169 0.086 0.072 0.146 0.732 0.558 0.057 0.168 1.677 0.986 0.220 0.100 0.071 0.098 1.724 6.533 0.032 0.369 0.035 0.051 340 chr11 47426569 47431311 + 0 NA non-coding (NR_134854, exon 1 of 11) non-coding (NR_134854, exon 1 of 11) 113 NR_134854 91252 Hs.523664 NM_152264 ENSG00000165915 SLC39A13 LZT-Hs9 solute carrier family 39 member 13 protein-coding nan 2.724 2.496 2.285 2.500 1.317 2.216 1.668 0.250 1.573 1.007 2.662 5.576 2.787 0.121 6.168 7.634 11.203 9.333 5.478 5.083 5.879 2.257 5.728 6.116 2.669 3.969 1.432 2.381 2.554 2.894 2.600 5.651 2.954 2.588 1.777 nan 2.354 1.205 2.008 3.080 0.436 0.875 2.216 2.662 1.063 2.368 2.248 0.800 1473 chr6 31586801 31590731 + 0 NA intron (NM_080686, intron 1 of 30).4 CpG 316 NM_004638 7916 Hs.123239 NM_004638 ENSG00000204469 PRRC2A BAT2|D6S51|D6S51E|G2 proline rich coiled-coil 2A protein-coding nan 3.921 5.476 8.004 7.176 4.352 8.074 4.074 0.288 3.089 1.302 10.071 14.426 8.013 0.238 9.346 9.150 11.870 15.218 nan 10.680 10.215 5.469 22.973 24.206 5.807 7.533 12.339 17.558 9.724 9.389 5.724 8.411 8.709 9.866 8.589 9.846 5.506 2.091 5.813 3.816 1.355 3.430 8.074 10.071 2.445 3.123 5.080 2.800 1786 chrX 39941064 39970013 + 0 NA intron (NM_001123384, intron 1 of 13) CpG 1181 NM_017745 54880 Hs.659681 NM_017745 ENSG00000183337 BCOR ANOP2|MAA2|MCOPS2 BCL6 corepressor protein-coding 4.068 3.311 2.917 3.824 3.020 1.640 2.591 1.735 0.233 1.857 0.735 3.362 6.161 1.371 0.052 2.232 2.697 2.241 3.783 6.549 5.479 2.433 0.868 2.996 2.779 1.792 2.439 3.334 4.638 3.816 5.054 2.070 3.247 2.151 1.910 1.821 3.046 1.119 0.742 2.634 1.684 0.873 3.122 2.591 3.362 0.848 1.482 1.696 1.675 313 chr11 15988055 15993507 + 0 NA TTS (NR_106721) TTS (NR_106721) 386 NR_106721 102464826 NR_106721 ENSG00000110693 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 1.535 nan 2.688 3.500 3.222 1.865 0.491 1.195 0.088 0.116 0.183 1.060 2.047 0.001 0.097 nan 0.522 11.672 12.290 0.890 0.956 0.873 0.233 1.684 1.956 1.624 nan 3.094 4.717 0.487 0.242 1.433 2.407 1.627 3.163 0.638 1.313 0.802 nan 1.108 0.281 0.106 0.072 0.491 1.060 1.748 0.581 0.726 1407 chr5 76924334 76942350 + 0 NA intron (NM_032109, intron 1 of 2) CpG-20821 1180 NM_032109 23440 Hs.202247 NM_032109 ENSG00000171540 OTP - orthopedia homeobox protein-coding 1.386 nan 0.561 0.623 0.716 0.365 0.483 0.165 0.126 0.147 0.137 0.511 0.861 0.836 0.132 0.326 0.310 0.250 0.253 2.171 1.504 nan 0.603 0.379 0.427 0.278 nan 1.583 2.295 1.852 1.314 0.317 0.607 0.724 0.485 0.219 0.504 0.299 0.274 0.710 11.379 0.126 0.282 0.483 0.511 0.076 0.491 0.107 0.089 690 chr16 11870579 11893979 + 0 NA intron (NM_014153, intron 1 of 22) intron (NM_014153, intron 1 of 22) 8835 NM_014153 29066 Hs.371856 NM_014153 ENSG00000122299 ZC3H7A HSPC055|ZC3H7|ZC3HDC7 zinc finger CCCH-type containing 7A protein-coding 2.161 1.457 nan 2.267 2.909 1.643 1.275 1.139 0.239 1.100 0.498 4.658 5.836 0.823 0.099 1.544 2.353 1.356 2.664 3.843 3.720 5.705 1.634 3.414 3.628 1.834 2.798 3.529 3.448 nan 4.835 1.194 2.429 3.042 4.348 1.887 2.838 3.547 1.354 1.611 1.481 1.055 2.115 1.275 4.658 1.576 3.195 1.030 1.376 1186 chr20 62273171 62290948 + 0 NA intron (NM_015894, intron 1 of 4) intron (NM_015894, intron 1 of 4) 2060 NM_001276310 50861 Hs.639609 NM_015894 ENSG00000197457 STMN3 SCLIP stathmin 3 protein-coding 2.968 2.713 2.135 2.536 2.268 1.115 2.193 0.446 0.255 1.356 0.666 3.002 5.619 1.743 0.126 3.859 nan 1.007 1.256 4.716 4.492 5.427 1.971 2.472 2.624 2.024 3.181 2.801 3.786 2.910 3.068 1.977 3.226 1.136 0.935 2.105 2.361 2.486 1.415 2.717 2.928 0.386 1.462 2.193 3.002 0.985 3.010 1.105 0.909 1679 chr8 128012462 128032428 + 0 NA Intergenic Intergenic -2954 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 (non-protein coding) ncRNA nan nan nan 0.138 0.309 0.207 0.083 0.183 0.111 0.063 0.067 0.126 nan 0.038 0.089 0.230 0.122 5.745 3.011 0.343 0.415 0.162 0.140 nan nan 3.843 5.986 0.174 0.283 0.245 0.103 0.111 0.176 0.073 0.085 0.216 0.271 0.291 0.395 0.036 0.048 0.019 0.063 0.083 0.126 0.116 0.015 0.039 0.100 667 chr15 80675098 80712749 + 0 NA Intergenic Intergenic -2769 NM_014862 9915 Hs.459070 NM_014862 ENSG00000172379 ARNT2 WEDAS|bHLHe1 aryl hydrocarbon receptor nuclear translocator 2 protein-coding 0.908 nan 0.677 0.227 0.584 0.414 0.349 0.107 0.086 0.267 0.209 0.699 0.999 0.324 0.085 3.323 3.200 6.220 4.477 0.955 0.916 1.023 0.440 6.534 6.793 0.650 1.010 0.793 1.447 1.136 0.969 0.875 1.262 0.152 0.140 0.216 0.223 0.552 0.398 0.177 0.190 0.023 0.198 0.349 0.699 0.134 0.313 0.420 0.102 1509 chr6 108877956 108884639 + 0 NA promoter-TSS (NM_001455) promoter-TSS (NM_001455) 271 NM_201559 2309 Hs.220950 NM_001455 ENSG00000118689 FOXO3 AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A forkhead box O3 protein-coding 7.744 nan nan 8.702 5.332 2.542 5.678 3.445 0.364 1.274 0.601 4.429 9.838 4.125 0.181 8.757 9.811 6.262 8.416 7.141 nan 5.715 4.803 15.358 14.811 2.808 3.779 3.417 6.936 nan 8.781 3.791 7.197 7.166 6.950 6.711 6.854 1.892 0.983 2.431 7.299 2.757 3.836 5.678 4.429 1.416 3.645 3.326 3.445 261 chr10 18895999 18906803 + 0 NA intron (NM_182543, intron 5 of 10) intron (NM_182543, intron 5 of 10) 39165 NM_182543 221078 Hs.396175 NM_182543 ENSG00000241058 NSUN6 4933414E04Rik|ARL5B-AS1|NOPD1 NOP2/Sun RNA methyltransferase family member 6 protein-coding nan 1.006 0.816 0.721 0.457 0.222 0.119 0.903 0.373 0.232 0.173 0.397 0.731 0.059 0.083 0.430 0.450 0.288 0.487 0.240 0.304 6.388 2.900 0.244 0.183 1.012 1.451 1.704 1.537 0.248 0.186 0.136 0.164 0.217 0.365 0.348 0.879 0.618 0.366 0.067 0.057 0.026 0.073 0.119 0.397 0.073 1.240 0.018 0.140 151 chr1 159022260 159029093 + 0 NA TTS (NM_005531) TTS (NM_005531) 20971 NM_004833 9447 Hs.733411 NM_004833 ENSG00000163568 AIM2 PYHIN4 absent in melanoma 2 protein-coding nan nan 0.800 0.026 0.222 0.047 0.075 0.212 0.105 0.091 0.084 0.017 0.316 0.016 0.134 0.390 0.283 4.457 13.232 0.281 nan 0.094 0.036 0.041 0.064 0.597 0.912 0.202 0.180 0.276 0.057 0.229 0.309 0.063 0.079 0.218 0.334 0.461 0.487 0.055 0.091 0.014 0.035 0.075 0.017 0.089 0.096 0.077 1042 chr2 68544954 68548262 + 0 NA 5' UTR (NM_001111101, exon 1 of 3) 5' UTR (NM_001111101, exon 1 of 3) 575 NM_015463 25927 Hs.212885 NM_015463 ENSG00000119865 CNRIP1 C2orf32|CRIP1 cannabinoid receptor interacting protein 1 protein-coding 10.088 2.240 nan 1.981 2.306 1.684 9.262 3.883 0.344 3.181 1.854 3.006 6.656 0.163 0.113 1.148 0.909 0.194 0.770 10.636 8.312 13.596 4.859 0.235 0.302 7.736 9.422 8.440 16.355 17.646 21.003 2.751 2.483 2.241 1.997 11.375 11.558 4.439 3.514 2.682 3.337 0.423 1.621 9.262 3.006 1.240 5.703 0.782 2.656 1674 chr8 116112908 116128662 + 0 NA Intergenic Intergenic 559454 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding nan nan 1.247 0.213 0.275 0.082 0.073 0.170 0.103 0.088 0.119 0.714 0.433 0.055 0.094 0.419 0.522 0.264 0.384 0.639 0.791 nan 0.064 0.660 nan 1.951 nan 0.921 1.102 6.183 5.976 0.211 0.503 1.480 1.123 0.244 0.449 0.789 0.726 0.018 0.085 0.525 0.142 0.073 0.714 0.019 0.277 0.457 0.079 1604 chr7 114169048 114174938 + 0 NA intron (NM_148898, intron 2 of 17) intron (NM_148898, intron 2 of 17) 105436 NM_148899 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 2.072 1.008 2.514 0.208 1.796 0.766 0.435 1.726 0.219 0.374 0.364 3.152 0.899 0.095 0.173 0.575 0.339 0.363 1.631 0.399 0.561 5.129 8.641 0.262 0.383 2.588 3.306 2.409 6.321 1.010 0.696 0.148 0.402 3.752 4.315 1.357 2.485 0.907 0.721 0.142 2.330 0.861 0.656 0.435 3.152 0.247 0.275 0.118 1.102 1611 chr7 122016498 122028658 + 0 NA intron (NM_001167940, intron 24 of 29) intron (NM_001167940, intron 24 of 29) -78013 NM_001160264 389549 Hs.553970 NM_001024613 ENSG00000128610 FEZF1 FEZ|HH22|ZNF312B FEZ family zinc finger 1 protein-coding 1.228 0.713 1.014 0.283 1.062 0.553 0.624 0.101 0.053 0.172 0.299 0.554 0.360 0.053 0.124 6.191 4.826 5.719 2.306 0.842 0.840 1.857 0.307 0.335 0.351 0.157 0.197 0.407 0.408 0.826 0.528 0.336 0.609 1.200 1.780 1.136 2.492 0.654 0.654 0.009 0.227 0.140 0.830 0.624 0.554 1.018 0.066 0.162 0.264 864 chr18 42373212 42386249 + 0 NA intron (NM_001130110, intron 2 of 3) LTR33|LTR|ERVL 118867 NM_015559 26040 Hs.435458 NM_015559 ENSG00000152217 SETBP1 MRD29|SEB SET binding protein 1 protein-coding nan 0.970 1.470 0.223 0.385 0.268 0.893 0.226 0.062 0.439 0.222 0.309 0.453 0.025 0.099 0.610 0.662 0.278 0.565 0.770 0.868 3.105 1.599 0.072 0.064 0.673 0.923 0.528 0.558 1.107 0.757 0.183 0.292 3.302 4.192 0.471 nan 2.031 1.633 0.159 0.164 1.052 0.369 0.893 0.309 0.200 0.408 0.196 0.350 1389 chr5 51105344 51110450 + 0 NA Intergenic Intergenic -428731 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA nan nan 0.787 0.070 0.315 0.222 0.200 0.087 0.062 0.080 0.175 0.187 0.412 0.127 0.053 0.382 0.258 8.448 5.773 0.395 0.630 nan 0.472 0.119 0.136 0.263 0.322 0.154 0.139 nan 0.370 0.101 0.078 0.228 0.498 0.169 0.174 0.295 0.389 0.152 0.088 0.018 2.565 0.200 0.187 0.037 0.080 0.020 0.024 521 chr12 133483561 133486919 + 0 NA Intergenic CpG 20812 NR_110919 101928530 Hs.560003 NR_110919 ENSG00000236617 LOC101928530 - uncharacterized LOC101928530 ncRNA 1.365 2.269 0.586 2.230 1.025 0.575 4.245 0.312 0.122 0.371 0.394 1.782 6.120 4.065 0.252 0.573 1.087 0.048 0.133 3.745 3.274 3.762 1.270 1.089 0.939 0.083 0.241 nan 3.760 0.953 1.026 0.803 1.367 0.822 0.542 1.071 1.306 0.332 0.183 2.768 3.014 0.054 14.615 4.245 1.782 1.012 0.473 0.256 362 chr11 65307726 65338765 + 0 NA intron (NM_001164266, intron 1 of 26) intron (NM_001164266, intron 1 of 26) 2454 NM_001164266 4054 Hs.289019 NM_021070 ENSG00000168056 LTBP3 DASS|LTBP-3|LTBP2|STHAG6|pp6425 latent transforming growth factor beta binding protein 3 protein-coding nan 1.623 1.190 1.427 1.573 0.828 1.418 0.543 0.146 0.825 0.438 2.130 2.881 1.761 0.127 1.633 2.984 1.352 2.217 3.064 3.261 2.187 0.726 1.800 1.992 1.395 2.270 3.669 4.106 1.442 1.159 1.201 1.870 1.077 1.101 0.685 1.564 1.688 0.819 1.906 1.776 0.260 0.575 1.418 2.130 0.508 0.734 0.696 0.359 436 chr12 7032606 7041199 + 0 NA promoter-TSS (NM_001940) promoter-TSS (NM_001940) -578 NM_001940 1822 Hs.143766 NM_001940 ENSG00000111676 ATN1 B37|D12S755E|DRPLA|HRS|NOD atrophin 1 protein-coding 3.977 nan nan 3.123 3.562 1.963 5.565 1.072 0.151 1.720 1.064 3.774 5.731 5.448 0.209 2.019 3.603 3.202 4.078 nan 10.885 5.042 1.954 5.704 5.739 4.382 5.874 2.227 2.837 2.631 2.423 2.258 4.290 2.586 2.158 2.261 nan 1.472 0.720 4.314 1.968 0.842 4.440 5.565 3.774 6.295 1.084 1.661 1.805 393 chr11 101979565 101986036 + 0 NA promoter-TSS (NM_001195045) promoter-TSS (NM_001195045) -371 NM_001195045 10413 Hs.503692 NM_006106 ENSG00000137693 YAP1 COB1|YAP|YAP2|YAP65|YKI Yes associated protein 1 protein-coding 0.629 0.770 2.005 0.175 0.160 0.174 0.612 2.343 0.176 0.071 0.142 0.222 5.302 10.869 0.222 0.271 0.133 2.552 6.080 0.709 0.571 0.158 0.092 1.121 1.143 0.152 0.256 0.215 0.263 0.361 0.060 0.275 0.596 0.079 0.069 0.106 0.130 0.180 0.289 0.035 0.061 0.036 0.612 0.222 0.015 0.006 0.092 0.152 555 chr13 108866249 108880403 + 0 NA intron (NM_032859, intron 1 of 1) intron (NM_032859, intron 1 of 1) 2563 NM_032859 84945 Hs.183528 NM_032859 ENSG00000139826 ABHD13 BEM46L1|C13orf6|bA153I24.2 abhydrolase domain containing 13 protein-coding 1.690 1.908 1.629 1.498 1.458 0.935 2.045 0.737 0.136 0.662 0.359 2.284 3.625 0.795 0.095 3.603 3.744 1.939 2.640 3.684 3.254 5.690 4.268 2.081 2.044 0.552 nan 2.883 3.996 2.418 2.241 1.315 2.280 2.146 1.953 2.574 nan 0.692 0.461 1.294 2.302 0.330 1.405 2.045 2.284 0.267 1.977 0.502 1.076 1127 chr20 303791 311334 + 0 NA 3' UTR (NM_006943, exon 1 of 1) 3' UTR (NM_006943, exon 1 of 1) 1347 NM_006943 6666 Hs.43627 NM_006943 ENSG00000177732 SOX12 SOX22 SRY-box 12 protein-coding 5.514 4.555 3.596 5.243 3.746 1.923 3.922 1.201 0.170 1.616 0.842 3.267 11.850 4.080 0.107 5.540 7.193 2.500 3.568 4.747 3.087 7.529 2.262 8.770 9.319 3.464 5.047 7.749 9.968 7.963 10.450 2.264 5.156 4.953 3.032 6.625 7.121 1.640 0.660 2.921 7.624 1.247 2.128 3.922 3.267 1.642 4.545 3.121 3.018 38 chr1 16531341 16583742 + 0 NA TTS (NM_030907) TTS (NM_030907) 6118 NM_030907 79363 Hs.546430 NM_030907 ENSG00000132881 RSG1 C1orf89 REM2 and RAB like small GTPase 1 protein-coding 1.887 1.495 nan 1.581 1.113 0.593 0.919 0.554 0.127 0.638 0.340 0.807 3.528 0.478 0.099 1.844 2.308 1.838 3.089 3.375 3.753 1.640 0.592 1.714 nan 0.776 nan 5.219 6.047 nan 1.072 1.309 1.916 0.355 0.395 0.961 1.642 1.371 0.759 1.183 1.489 0.071 0.626 0.919 0.807 0.364 0.659 0.623 0.338 820 chr17 74125404 74144429 + 0 NA intron (NM_001454, intron 2 of 2) intron (NM_001454, intron 2 of 2) -1721 NR_040017 100507218 Hs.654866 NR_040017 ENSG00000267128 RNF157-AS1 - RNF157 antisense RNA 1 ncRNA 1.684 1.650 1.722 1.775 1.973 1.029 0.725 0.146 0.164 1.142 0.533 1.468 3.444 0.127 0.110 1.226 2.045 0.749 1.244 1.220 1.433 5.145 1.287 0.909 0.911 nan 0.993 7.684 6.598 0.982 0.646 0.978 1.843 0.754 0.877 0.909 0.883 nan 0.677 1.715 0.717 0.161 1.506 0.725 1.468 0.328 0.260 1.157 0.231 244 chr1 249118862 249121583 + 0 NA promoter-TSS (NM_001322463) promoter-TSS (NM_001322463) -68 NM_030645 80851 Hs.298573 NM_030645 ENSG00000175137 SH3BP5L - SH3 binding domain protein 5 like protein-coding 6.587 5.692 6.448 10.170 9.226 6.489 2.254 4.320 0.341 4.072 1.557 4.651 13.756 4.857 0.174 9.271 10.088 14.292 19.427 13.007 12.501 13.924 6.645 19.341 23.065 5.897 6.459 8.084 10.750 9.055 9.167 2.651 4.911 7.338 6.914 7.917 11.405 4.731 2.542 2.963 2.537 1.295 2.323 2.254 4.651 2.170 2.907 1.642 3.231 1582 chr7 57545895 57556181 + 0 NA Intergenic HSATII|Satellite|Satellite 41155 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding nan 3.957 3.559 0.476 1.105 0.875 0.837 0.468 5.651 0.605 1.566 0.307 1.577 0.296 1.654 1.156 0.490 0.362 0.532 0.876 1.324 0.475 0.347 0.725 0.512 1.089 1.453 0.695 0.823 1.468 0.450 0.564 1.047 0.427 0.688 0.616 0.997 0.361 0.674 0.223 0.449 0.275 0.232 0.837 0.307 0.196 0.175 0.425 0.413 1707 chr9 2156104 2162767 + 0 NA intron (NM_001289400, intron 1 of 7) intron (NM_001289400, intron 1 of 7) 979 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 0.730 1.767 0.826 0.145 1.890 1.028 0.306 1.528 0.196 4.300 2.135 2.452 0.490 0.244 0.061 0.812 0.645 3.410 8.174 0.758 0.880 9.606 3.843 0.434 0.488 1.024 1.559 0.642 0.773 2.429 1.813 0.889 1.325 3.344 3.839 0.268 nan 8.279 5.024 0.841 1.729 0.313 0.118 0.306 2.452 0.132 0.534 0.788 0.075 998 chr19 59024584 59034478 + 0 NA intron (NM_001316980, intron 1 of 2) intron (NM_001316980, intron 1 of 2) 1395 NM_032792 84878 Hs.515662 NM_032792 ENSG00000119574 ZBTB45 ZNF499 zinc finger and BTB domain containing 45 protein-coding 2.794 1.942 2.855 2.686 5.564 2.618 3.303 0.618 0.104 1.127 0.628 3.557 4.127 2.901 0.132 5.921 7.018 3.080 4.278 4.889 4.899 7.803 3.154 3.082 3.119 2.634 4.189 4.285 6.472 4.545 5.165 2.229 3.635 4.180 3.785 2.781 3.210 3.094 1.591 3.034 2.534 0.779 1.012 3.303 3.557 1.121 2.029 1.521 0.664 925 chr19 13017884 13031491 + 0 NA intron (NM_001105578, intron 2 of 5) intron (NM_001105578, intron 2 of 5) 5399 NM_001105578 256126 Hs.655173 NM_001105578 ENSG00000161860 SYCE2 CESC1 synaptonemal complex central element protein 2 protein-coding 3.189 2.585 5.624 5.268 3.141 1.436 0.862 0.271 0.261 1.834 1.130 10.108 3.480 0.247 0.103 0.891 1.979 0.604 0.824 11.023 12.422 8.347 3.152 0.830 0.744 1.700 2.411 8.639 10.014 3.088 2.797 0.410 0.481 2.370 2.160 2.156 6.249 3.863 1.952 8.217 3.477 0.883 1.945 0.862 10.108 0.664 1.063 0.181 1.431 1088 chr2 182531956 182562726 + 0 NA Intergenic Intergenic -1949 NM_002500 4760 Hs.574626 NM_002500 ENSG00000162992 NEUROD1 BETA2|BHF-1|MODY6|NEUROD|bHLHa3 neuronal differentiation 1 protein-coding 4.182 1.010 1.768 0.319 0.488 0.286 0.354 0.106 0.068 0.198 0.212 0.451 0.682 0.025 0.071 0.304 0.248 0.159 0.136 0.320 0.445 1.817 0.822 0.251 0.266 nan 7.067 0.884 1.114 11.325 15.320 0.111 0.247 0.663 0.628 3.952 nan 0.415 0.334 0.483 0.047 0.176 0.314 0.354 0.451 0.850 0.063 0.052 2.490 564 chr14 20921972 20924855 + 0 NA promoter-TSS (NM_017807) promoter-TSS (NM_017807) 123 NM_080648 328 Hs.73722 NM_001641 ENSG00000100823 APEX1 APE|APE1|APEN|APEX|APX|HAP1|REF1 apurinic/apyrimidinic endodeoxyribonuclease 1 protein-coding 17.307 5.864 7.678 11.501 7.856 3.724 5.662 7.804 0.371 2.300 0.973 6.484 14.510 7.179 0.215 8.299 7.056 12.088 16.950 17.335 15.169 11.676 7.829 25.809 26.821 10.182 12.631 15.161 20.470 18.587 17.895 7.696 10.236 11.631 13.447 9.685 8.601 7.034 4.362 8.191 8.474 2.085 5.283 5.662 6.484 4.006 4.559 2.967 2.501 342 chr11 47535256 47548220 + 0 NA intron (NM_001330272, intron 1 of 15) intron (NM_001330272, intron 1 of 15) 3802 NM_001172639 10658 Hs.595333 NM_006560 ENSG00000149187 CELF1 BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50 CUGBP, Elav-like family member 1 protein-coding nan 1.673 1.013 0.326 0.709 0.298 0.585 0.707 0.180 0.511 0.334 0.338 0.669 0.266 0.116 0.672 1.079 0.405 0.707 1.147 1.365 0.939 0.343 0.930 1.026 4.520 5.482 0.340 0.751 1.904 1.599 0.443 0.738 0.922 1.454 0.643 nan 0.980 0.673 0.181 0.296 0.264 0.141 0.585 0.338 0.606 0.094 0.183 0.229 1751 chr9 125662105 125668769 + 0 NA intron (NM_001100588, intron 1 of 20) intron (NM_001100588, intron 1 of 20) 2125 NM_001100588 54542 Hs.533499 NM_018835 ENSG00000056586 RC3H2 MNAB|RNF164 ring finger and CCCH-type domains 2 protein-coding nan nan 2.209 3.141 1.859 0.915 2.263 1.669 0.337 1.445 0.851 2.353 nan 1.283 0.100 3.674 3.112 4.312 6.533 4.926 5.059 3.339 1.546 7.524 8.438 2.019 nan 4.252 7.145 9.660 8.217 2.521 3.804 2.355 3.359 3.907 2.899 nan 1.144 1.496 1.028 0.410 1.912 2.263 2.353 0.680 1.493 1.061 0.760 844 chr18 979819 991509 + 0 NA Intergenic Intergenic 80467 NM_001117 116 Hs.531719 NM_001117 ENSG00000141433 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 protein-coding 1.338 0.936 1.695 3.659 0.936 0.500 0.095 0.129 0.055 0.430 0.261 1.790 nan 0.047 0.133 0.287 0.211 0.217 0.291 1.964 2.234 nan 2.568 0.405 0.352 1.017 nan 4.936 5.244 nan 1.388 0.195 0.295 1.481 2.265 0.372 nan nan 2.048 1.308 0.236 0.369 0.362 0.095 1.790 0.433 2.158 0.144 0.095 1225 chr22 33955403 33974150 + 0 NA intron (NM_004737, intron 6 of 15) intron (NM_004737, intron 6 of 15) -132121 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA nan 0.529 0.722 0.225 0.356 0.205 3.180 0.080 0.052 0.083 0.062 0.239 4.231 0.023 0.071 0.304 0.306 0.179 nan 0.292 0.336 2.340 1.100 0.088 0.109 0.139 nan 2.390 4.104 0.331 0.256 0.185 0.176 0.047 0.081 0.413 nan 0.558 0.494 0.032 1.924 0.021 0.119 3.180 0.239 0.010 0.054 0.068 0.379 913 chr19 1587322 1593565 + 0 NA intron (NM_001281454, intron 1 of 6) AluJb|SINE|Alu 2317 NM_001281454 53615 Hs.178728 NM_003926 ENSG00000071655 MBD3 - methyl-CpG binding domain protein 3 protein-coding 4.961 2.497 7.139 4.272 4.937 2.410 3.844 1.798 0.231 3.036 1.265 6.063 5.940 2.799 0.121 5.868 5.371 5.168 7.075 8.992 9.076 4.320 1.898 9.794 9.822 4.336 5.820 5.025 nan 10.220 10.892 2.487 4.378 6.406 5.296 4.881 5.383 3.721 1.949 4.739 4.029 1.186 1.994 3.844 6.063 1.616 2.772 0.934 2.040 243 chr1 246371336 246385418 + 0 NA intron (NM_001167740, intron 5 of 11) intron (NM_001167740, intron 5 of 11) 202337 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding nan 1.357 nan 8.039 0.783 0.274 0.344 0.186 0.159 2.423 1.632 3.310 14.815 0.085 0.139 0.986 1.266 0.316 0.637 5.679 5.745 10.599 3.101 0.448 0.460 0.513 0.735 3.736 4.409 0.472 0.259 0.506 0.768 1.789 1.647 0.447 0.709 1.799 1.075 4.265 0.069 0.256 0.085 0.344 3.310 0.062 3.277 0.317 0.134 1175 chr20 56142335 56153279 + 0 NA Intergenic Intergenic 11670 NM_002591 5105 Hs.1872 NM_002591 ENSG00000124253 PCK1 PEPCK-C|PEPCK1|PEPCKC phosphoenolpyruvate carboxykinase 1 protein-coding 1.672 1.762 0.688 0.088 0.805 0.397 1.391 0.111 0.087 0.208 0.165 0.098 0.259 0.108 0.092 1.012 nan 0.581 1.300 0.199 0.286 9.097 2.588 0.257 0.190 0.189 0.299 0.116 0.148 0.382 0.124 1.209 1.563 0.209 0.354 0.228 0.277 0.833 0.643 0.048 0.098 0.044 0.051 1.391 0.098 0.035 0.065 2.389 0.080 940 chr19 18524652 18551630 + 0 NA intron (NM_001009998, intron 1 of 16) intron (NM_001009998, intron 1 of 16) 7995 NM_032627 170463 Hs.515259 NM_032627 ENSG00000130511 SSBP4 - single stranded DNA binding protein 4 protein-coding 3.708 1.874 1.676 1.220 3.900 1.880 2.904 0.389 0.084 0.613 0.333 1.206 2.335 2.669 0.096 1.327 2.277 1.107 1.868 2.244 2.135 3.083 1.381 1.711 1.854 0.935 1.464 2.904 4.422 2.896 2.700 0.836 1.496 2.138 1.749 3.395 4.292 2.220 1.186 1.660 1.151 0.490 0.256 2.904 1.206 0.921 1.402 0.856 1.380